Query 015610
Match_columns 403
No_of_seqs 259 out of 2057
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:55:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02441 fa_ox_alpha_mit fatt 100.0 2.2E-88 4.7E-93 718.3 44.9 387 1-393 346-737 (737)
2 TIGR02437 FadB fatty oxidation 100.0 4.2E-87 9.1E-92 707.2 45.1 384 1-393 324-714 (714)
3 TIGR02440 FadJ fatty oxidation 100.0 5.7E-86 1.2E-90 698.5 45.0 383 1-393 315-699 (699)
4 PRK11154 fadJ multifunctional 100.0 1E-85 2.2E-90 698.2 44.6 384 1-394 320-707 (708)
5 PRK11730 fadB multifunctional 100.0 2.6E-85 5.7E-90 695.0 45.3 384 1-393 324-714 (715)
6 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 4.1E-82 8.8E-87 644.6 43.4 389 1-393 16-502 (503)
7 PRK08268 3-hydroxy-acyl-CoA de 100.0 1E-79 2.3E-84 628.6 44.2 390 1-394 18-504 (507)
8 COG1250 FadB 3-hydroxyacyl-CoA 100.0 5.4E-71 1.2E-75 522.8 30.2 268 1-268 14-285 (307)
9 KOG1683 Hydroxyacyl-CoA dehydr 100.0 2.4E-69 5.3E-74 508.7 18.4 378 1-394 1-380 (380)
10 KOG2304 3-hydroxyacyl-CoA dehy 100.0 1E-68 2.2E-73 471.3 18.3 266 1-266 22-297 (298)
11 PRK07819 3-hydroxybutyryl-CoA 100.0 1.7E-64 3.6E-69 483.3 30.8 266 1-266 16-286 (286)
12 PRK08269 3-hydroxybutyryl-CoA 100.0 1.1E-61 2.4E-66 468.5 32.1 268 1-268 1-284 (314)
13 PRK08293 3-hydroxybutyryl-CoA 100.0 4.3E-59 9.3E-64 447.5 30.9 267 1-267 14-287 (287)
14 PRK09260 3-hydroxybutyryl-CoA 100.0 1.9E-58 4.2E-63 443.2 31.8 270 1-270 12-284 (288)
15 PRK06035 3-hydroxyacyl-CoA deh 100.0 1.1E-57 2.4E-62 438.6 30.5 266 1-266 14-290 (291)
16 PRK05808 3-hydroxybutyryl-CoA 100.0 1.3E-57 2.8E-62 436.3 30.4 266 1-266 14-282 (282)
17 PLN02545 3-hydroxybutyryl-CoA 100.0 3.7E-57 8E-62 435.9 31.7 270 1-270 15-287 (295)
18 PRK07530 3-hydroxybutyryl-CoA 100.0 7.2E-57 1.6E-61 433.2 30.9 269 1-269 15-286 (292)
19 PRK07066 3-hydroxybutyryl-CoA 100.0 1E-56 2.3E-61 432.5 24.9 264 1-268 18-298 (321)
20 PRK06130 3-hydroxybutyryl-CoA 100.0 1.6E-46 3.5E-51 364.5 29.9 264 1-269 15-285 (311)
21 PRK06129 3-hydroxyacyl-CoA deh 100.0 3.8E-41 8.2E-46 326.2 28.9 251 1-251 13-274 (308)
22 PF02737 3HCDH_N: 3-hydroxyacy 100.0 3.4E-42 7.4E-47 307.4 19.1 171 1-171 10-180 (180)
23 PRK07531 bifunctional 3-hydrox 100.0 1.6E-37 3.4E-42 318.4 25.9 232 1-236 15-254 (495)
24 KOG2305 3-hydroxyacyl-CoA dehy 100.0 2.3E-37 4.9E-42 273.2 13.8 220 1-220 14-241 (313)
25 PRK08268 3-hydroxy-acyl-CoA de 100.0 2.2E-30 4.7E-35 265.4 19.1 162 93-254 336-500 (507)
26 PF00725 3HCDH: 3-hydroxyacyl- 99.9 3.8E-26 8.2E-31 183.6 9.1 94 173-266 1-97 (97)
27 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.9 6.2E-23 1.3E-27 210.0 15.8 121 134-254 376-499 (503)
28 KOG2304 3-hydroxyacyl-CoA dehy 99.9 2.6E-21 5.6E-26 171.5 18.9 245 135-396 11-298 (298)
29 COG1250 FadB 3-hydroxyacyl-CoA 99.9 2.7E-20 6E-25 177.0 20.1 224 162-397 25-285 (307)
30 PF00725 3HCDH: 3-hydroxyacyl- 99.8 2.7E-21 5.8E-26 155.3 8.4 89 303-395 1-97 (97)
31 COG2084 MmsB 3-hydroxyisobutyr 99.8 5.7E-20 1.2E-24 173.2 16.6 177 1-208 11-211 (286)
32 PRK07819 3-hydroxybutyryl-CoA 99.8 1E-18 2.2E-23 167.5 19.5 225 159-395 25-286 (286)
33 PRK09260 3-hydroxybutyryl-CoA 99.8 7E-19 1.5E-23 169.0 16.6 145 246-399 122-284 (288)
34 PRK05808 3-hydroxybutyryl-CoA 99.8 1.9E-18 4.2E-23 165.5 16.7 196 188-395 51-282 (282)
35 TIGR02440 FadJ fatty oxidation 99.8 4.4E-18 9.6E-23 181.1 18.3 224 160-398 326-584 (699)
36 PLN02545 3-hydroxybutyryl-CoA 99.8 4.8E-17 1.1E-21 156.8 23.2 228 159-399 24-287 (295)
37 PRK08269 3-hydroxybutyryl-CoA 99.8 1.7E-17 3.8E-22 160.6 19.7 230 160-397 11-284 (314)
38 PRK08293 3-hydroxybutyryl-CoA 99.8 9.8E-18 2.1E-22 161.0 16.7 142 246-396 125-287 (287)
39 PRK11154 fadJ multifunctional 99.8 1.7E-17 3.6E-22 177.2 19.8 223 160-397 331-588 (708)
40 PRK11730 fadB multifunctional 99.8 2.1E-17 4.5E-22 176.4 18.8 223 161-397 335-594 (715)
41 TIGR02441 fa_ox_alpha_mit fatt 99.8 8E-17 1.7E-21 172.0 22.2 246 134-398 334-616 (737)
42 PRK06035 3-hydroxyacyl-CoA deh 99.7 2E-17 4.4E-22 159.1 15.3 141 246-395 126-290 (291)
43 TIGR02437 FadB fatty oxidation 99.7 3.7E-17 7.9E-22 174.2 18.5 223 161-397 335-594 (714)
44 PRK07530 3-hydroxybutyryl-CoA 99.7 1.7E-17 3.6E-22 159.8 12.8 143 247-398 125-286 (292)
45 KOG0409 Predicted dehydrogenas 99.7 7.7E-17 1.7E-21 149.6 16.5 177 1-206 46-244 (327)
46 TIGR01505 tartro_sem_red 2-hyd 99.7 8.6E-17 1.9E-21 154.8 15.7 177 1-208 10-209 (291)
47 PRK11559 garR tartronate semia 99.7 1.5E-15 3.1E-20 146.6 16.1 177 1-208 13-212 (296)
48 TIGR01692 HIBADH 3-hydroxyisob 99.6 6.2E-15 1.3E-19 141.7 17.7 176 1-208 7-206 (288)
49 PRK06130 3-hydroxybutyryl-CoA 99.6 1.8E-15 3.9E-20 147.0 12.0 95 302-397 183-284 (311)
50 PRK15461 NADH-dependent gamma- 99.6 2.1E-14 4.5E-19 138.5 16.8 172 1-204 12-206 (296)
51 PRK07417 arogenate dehydrogena 99.6 3E-14 6.4E-19 136.3 13.9 144 1-169 11-166 (279)
52 PRK15059 tartronate semialdehy 99.6 6.7E-14 1.5E-18 134.5 15.8 171 1-204 11-204 (292)
53 PRK12557 H(2)-dependent methyl 99.6 2.9E-13 6.3E-18 132.3 19.4 205 2-229 32-260 (342)
54 PLN02350 phosphogluconate dehy 99.5 2.5E-13 5.5E-18 138.2 17.3 177 1-204 17-224 (493)
55 PLN02858 fructose-bisphosphate 99.5 2.6E-13 5.6E-18 153.1 18.4 176 1-208 15-217 (1378)
56 PRK09287 6-phosphogluconate de 99.5 8.7E-13 1.9E-17 133.5 16.7 178 1-205 1-208 (459)
57 PRK11199 tyrA bifunctional cho 99.5 9.1E-13 2E-17 130.9 14.8 159 1-200 110-277 (374)
58 PF03446 NAD_binding_2: NAD bi 99.4 1.5E-13 3.3E-18 120.9 6.8 136 1-168 12-160 (163)
59 PRK07066 3-hydroxybutyryl-CoA 99.4 1.4E-12 3E-17 126.4 13.8 121 243-369 120-254 (321)
60 PRK12490 6-phosphogluconate de 99.4 6.5E-12 1.4E-16 121.4 17.5 172 1-205 11-210 (299)
61 PTZ00142 6-phosphogluconate de 99.4 3.8E-12 8.2E-17 129.4 16.4 179 1-205 12-219 (470)
62 PLN02858 fructose-bisphosphate 99.4 6.4E-12 1.4E-16 142.0 17.5 178 1-208 335-537 (1378)
63 PRK09599 6-phosphogluconate de 99.4 1.7E-11 3.6E-16 118.6 17.7 172 1-205 11-211 (301)
64 PRK06545 prephenate dehydrogen 99.4 1.4E-11 3.1E-16 121.9 15.8 165 1-188 11-195 (359)
65 TIGR00872 gnd_rel 6-phosphoglu 99.3 5.4E-11 1.2E-15 114.9 18.3 174 1-204 11-208 (298)
66 PLN02688 pyrroline-5-carboxyla 99.3 1E-10 2.2E-15 111.0 19.2 174 1-204 11-201 (266)
67 TIGR00873 gnd 6-phosphoglucona 99.3 4.5E-11 9.8E-16 121.6 17.5 178 1-205 10-216 (467)
68 PRK08655 prephenate dehydrogen 99.3 8.3E-11 1.8E-15 119.2 17.0 175 1-200 12-198 (437)
69 TIGR03026 NDP-sugDHase nucleot 99.3 8.7E-11 1.9E-15 118.5 16.2 189 1-204 11-243 (411)
70 PF02153 PDH: Prephenate dehyd 99.3 4.8E-11 1E-15 112.8 13.0 139 5-168 1-156 (258)
71 TIGR01724 hmd_rel H2-forming N 99.2 7.6E-10 1.6E-14 105.1 19.3 146 2-168 32-192 (341)
72 PRK15057 UDP-glucose 6-dehydro 99.2 1.1E-10 2.5E-15 116.3 14.6 183 1-204 11-232 (388)
73 PRK08507 prephenate dehydrogen 99.2 7.3E-10 1.6E-14 105.8 19.0 142 1-170 11-168 (275)
74 cd05297 GH4_alpha_glucosidase_ 99.2 1.1E-12 2.3E-17 132.5 -0.7 142 10-165 26-185 (423)
75 COG0287 TyrA Prephenate dehydr 99.2 1.8E-10 3.9E-15 109.4 14.2 144 1-169 14-170 (279)
76 PRK11064 wecC UDP-N-acetyl-D-m 99.2 4.7E-10 1E-14 113.1 17.7 186 1-204 14-247 (415)
77 PRK07502 cyclohexadienyl dehyd 99.1 6E-10 1.3E-14 108.1 14.0 144 1-169 17-178 (307)
78 PRK11880 pyrroline-5-carboxyla 99.1 8.2E-09 1.8E-13 98.0 18.5 175 1-204 13-202 (267)
79 PRK15182 Vi polysaccharide bio 99.1 8.8E-09 1.9E-13 104.0 19.3 185 1-204 17-243 (425)
80 PRK07679 pyrroline-5-carboxyla 99.0 9.1E-09 2E-13 98.4 16.2 177 1-204 14-206 (279)
81 PRK00094 gpsA NAD(P)H-dependen 99.0 9.9E-09 2.1E-13 100.1 14.3 186 1-203 12-238 (325)
82 PLN02256 arogenate dehydrogena 99.0 8.3E-09 1.8E-13 99.7 13.1 142 1-169 47-203 (304)
83 PRK08818 prephenate dehydrogen 99.0 5.6E-09 1.2E-13 103.0 12.0 129 1-169 16-154 (370)
84 PRK12491 pyrroline-5-carboxyla 98.9 3E-07 6.6E-12 87.6 20.5 172 1-204 13-204 (272)
85 PRK14806 bifunctional cyclohex 98.9 3.6E-08 7.8E-13 106.8 15.1 144 1-169 14-176 (735)
86 PRK08229 2-dehydropantoate 2-r 98.8 3.4E-07 7.4E-12 90.1 19.1 155 1-172 13-179 (341)
87 PRK06129 3-hydroxyacyl-CoA deh 98.8 1.5E-07 3.3E-12 91.4 15.8 130 253-388 131-275 (308)
88 cd01339 LDH-like_MDH L-lactate 98.8 1E-08 2.3E-13 99.1 7.0 114 1-126 9-139 (300)
89 PRK14618 NAD(P)H-dependent gly 98.8 6.1E-08 1.3E-12 94.9 12.5 183 1-203 15-237 (328)
90 PRK14619 NAD(P)H-dependent gly 98.7 2.7E-07 5.8E-12 89.6 14.4 127 1-171 15-156 (308)
91 PTZ00082 L-lactate dehydrogena 98.7 1.7E-08 3.7E-13 98.3 4.7 115 1-127 17-153 (321)
92 PRK05479 ketol-acid reductoiso 98.7 1.2E-06 2.6E-11 85.0 16.7 177 1-203 28-227 (330)
93 PRK07680 late competence prote 98.6 2.1E-06 4.5E-11 81.9 17.6 173 1-204 11-202 (273)
94 PLN02712 arogenate dehydrogena 98.6 5.3E-07 1.1E-11 95.9 13.6 142 1-169 380-536 (667)
95 PTZ00117 malate dehydrogenase; 98.6 7.4E-08 1.6E-12 93.8 5.7 115 1-127 16-147 (319)
96 PRK06476 pyrroline-5-carboxyla 98.6 3.6E-06 7.7E-11 79.6 16.8 170 1-204 11-193 (258)
97 COG0677 WecC UDP-N-acetyl-D-ma 98.5 6.9E-06 1.5E-10 80.0 18.5 190 1-204 20-250 (436)
98 COG1004 Ugd Predicted UDP-gluc 98.4 9.2E-06 2E-10 79.4 16.3 191 2-204 12-241 (414)
99 PLN02353 probable UDP-glucose 98.4 5.8E-06 1.3E-10 84.5 15.7 194 1-204 12-251 (473)
100 TIGR00465 ilvC ketol-acid redu 98.4 1.3E-05 2.8E-10 77.8 16.8 192 1-223 14-231 (314)
101 TIGR01915 npdG NADPH-dependent 98.4 7.3E-06 1.6E-10 75.6 14.1 153 1-170 12-189 (219)
102 COG4007 Predicted dehydrogenas 98.4 3.9E-06 8.5E-11 76.8 11.8 146 2-169 33-194 (340)
103 PLN02712 arogenate dehydrogena 98.4 5.5E-06 1.2E-10 88.2 14.9 141 1-169 63-219 (667)
104 PRK06928 pyrroline-5-carboxyla 98.4 2.3E-05 5.1E-10 74.9 17.9 142 1-167 12-160 (277)
105 PRK06223 malate dehydrogenase; 98.4 6.9E-07 1.5E-11 86.7 7.4 95 1-107 13-123 (307)
106 COG1023 Gnd Predicted 6-phosph 98.4 2.9E-05 6.3E-10 70.7 16.7 172 1-204 11-209 (300)
107 PRK07634 pyrroline-5-carboxyla 98.3 2.8E-05 6.1E-10 72.7 16.0 177 1-204 15-206 (245)
108 cd00650 LDH_MDH_like NAD-depen 98.2 2.5E-06 5.5E-11 80.9 7.4 101 1-117 10-129 (263)
109 KOG1683 Hydroxyacyl-CoA dehydr 98.2 9.2E-07 2E-11 85.1 3.1 76 173-253 294-375 (380)
110 COG0240 GpsA Glycerol-3-phosph 98.2 3.6E-05 7.8E-10 74.1 13.4 156 1-173 12-181 (329)
111 TIGR00112 proC pyrroline-5-car 98.2 0.00014 3E-09 68.3 17.1 166 13-204 9-184 (245)
112 PTZ00431 pyrroline carboxylate 98.1 5.1E-05 1.1E-09 71.9 13.5 168 1-204 14-197 (260)
113 PF03721 UDPG_MGDP_dh_N: UDP-g 98.1 5.9E-06 1.3E-10 74.1 5.8 98 1-111 11-125 (185)
114 PRK07531 bifunctional 3-hydrox 98.0 3.8E-05 8.2E-10 79.4 10.5 110 253-368 129-250 (495)
115 PRK06444 prephenate dehydrogen 98.0 8.3E-05 1.8E-09 67.2 11.3 85 68-168 30-119 (197)
116 PF01210 NAD_Gly3P_dh_N: NAD-d 97.9 7.2E-06 1.6E-10 71.5 3.7 94 1-108 10-106 (157)
117 COG2085 Predicted dinucleotide 97.9 0.00021 4.6E-09 64.4 12.8 143 1-170 12-180 (211)
118 PRK12921 2-dehydropantoate 2-r 97.9 0.00029 6.3E-09 68.0 14.9 157 1-173 11-180 (305)
119 TIGR02354 thiF_fam2 thiamine b 97.8 3.6E-05 7.7E-10 69.9 6.2 95 1-103 32-143 (200)
120 COG0345 ProC Pyrroline-5-carbo 97.8 0.0033 7.2E-08 59.3 19.4 171 1-204 12-201 (266)
121 PRK12480 D-lactate dehydrogena 97.8 0.00024 5.3E-09 69.6 12.0 101 1-129 157-261 (330)
122 COG0362 Gnd 6-phosphogluconate 97.8 0.00053 1.2E-08 66.9 13.9 180 1-208 14-223 (473)
123 PRK12439 NAD(P)H-dependent gly 97.7 0.00061 1.3E-08 67.1 13.7 163 1-183 18-197 (341)
124 TIGR01763 MalateDH_bact malate 97.7 7.5E-05 1.6E-09 72.4 6.8 101 1-116 12-127 (305)
125 PF10727 Rossmann-like: Rossma 97.6 0.00031 6.7E-09 58.9 8.5 104 1-128 21-127 (127)
126 TIGR00745 apbA_panE 2-dehydrop 97.6 0.0026 5.5E-08 60.9 16.1 157 1-173 2-170 (293)
127 PRK06249 2-dehydropantoate 2-r 97.6 0.0029 6.2E-08 61.6 16.4 162 1-178 16-194 (313)
128 PRK06522 2-dehydropantoate 2-r 97.6 0.0018 3.8E-08 62.4 14.5 102 1-117 11-113 (304)
129 PRK14620 NAD(P)H-dependent gly 97.5 0.0015 3.2E-08 63.9 12.2 161 1-180 11-189 (326)
130 PRK11861 bifunctional prephena 97.5 0.00046 1E-08 74.1 9.2 94 73-169 1-110 (673)
131 PRK13403 ketol-acid reductoiso 97.4 0.0041 8.8E-08 60.1 14.5 134 1-165 27-174 (335)
132 PF03807 F420_oxidored: NADP o 97.3 0.00036 7.8E-09 55.2 4.8 82 1-106 10-95 (96)
133 PRK13243 glyoxylate reductase; 97.3 0.0015 3.2E-08 64.2 9.4 103 1-129 161-267 (333)
134 TIGR03376 glycerol3P_DH glycer 97.2 0.0026 5.7E-08 62.5 11.1 157 1-173 10-197 (342)
135 PRK07574 formate dehydrogenase 97.2 0.0056 1.2E-07 61.1 12.5 128 1-153 203-344 (385)
136 cd01065 NAD_bind_Shikimate_DH 97.2 0.00051 1.1E-08 59.3 4.6 97 1-118 30-129 (155)
137 PRK06436 glycerate dehydrogena 97.1 0.0024 5.1E-08 61.8 9.3 125 1-155 133-269 (303)
138 PLN03139 formate dehydrogenase 97.1 0.0071 1.5E-07 60.3 12.7 128 1-153 210-351 (386)
139 PTZ00345 glycerol-3-phosphate 97.1 0.0056 1.2E-07 60.7 11.3 158 1-173 22-206 (365)
140 PRK00961 H(2)-dependent methyl 97.0 0.03 6.5E-07 52.3 14.6 107 58-168 129-241 (342)
141 PRK15076 alpha-galactosidase; 97.0 0.0029 6.2E-08 64.3 8.8 58 11-80 28-86 (431)
142 PF00670 AdoHcyase_NAD: S-aden 96.9 0.0043 9.3E-08 54.0 8.0 87 2-116 35-124 (162)
143 PRK15469 ghrA bifunctional gly 96.8 0.0062 1.4E-07 59.2 9.5 102 1-129 147-253 (312)
144 PRK08605 D-lactate dehydrogena 96.8 0.0075 1.6E-07 59.2 10.0 90 1-118 157-251 (332)
145 TIGR01723 hmd_TIGR 5,10-methen 96.8 0.063 1.4E-06 50.4 14.9 107 58-168 127-239 (340)
146 TIGR01327 PGDH D-3-phosphoglyc 96.7 0.0097 2.1E-07 62.1 10.2 119 1-144 149-278 (525)
147 cd00300 LDH_like L-lactate deh 96.6 0.007 1.5E-07 58.5 7.6 100 1-116 9-124 (300)
148 cd05291 HicDH_like L-2-hydroxy 96.5 0.0049 1.1E-07 59.8 6.4 100 1-116 11-126 (306)
149 PRK05225 ketol-acid reductoiso 96.5 0.37 8E-06 48.8 19.3 173 2-204 48-253 (487)
150 PF00056 Ldh_1_N: lactate/mala 96.5 0.027 5.8E-07 48.1 10.0 108 2-125 13-141 (141)
151 PRK13581 D-3-phosphoglycerate 96.5 0.012 2.5E-07 61.5 9.2 118 1-144 151-279 (526)
152 PF07991 IlvN: Acetohydroxy ac 96.3 0.008 1.7E-07 52.1 5.8 83 1-110 15-99 (165)
153 PRK14194 bifunctional 5,10-met 96.3 0.0062 1.4E-07 58.4 5.5 61 1-105 171-231 (301)
154 PLN02928 oxidoreductase family 96.3 0.028 6E-07 55.5 10.1 130 1-143 170-311 (347)
155 cd05294 LDH-like_MDH_nadp A la 96.3 0.013 2.9E-07 56.9 7.5 97 2-111 13-127 (309)
156 COG1893 ApbA Ketopantoate redu 96.2 0.26 5.7E-06 47.8 16.0 156 1-170 11-176 (307)
157 TIGR02853 spore_dpaA dipicolin 95.9 0.016 3.4E-07 55.7 6.2 80 1-107 162-242 (287)
158 cd05292 LDH_2 A subgroup of L- 95.7 0.019 4.1E-07 55.8 5.8 97 1-114 11-123 (308)
159 COG0111 SerA Phosphoglycerate 95.6 0.091 2E-06 51.3 10.3 116 1-143 153-282 (324)
160 PRK05708 2-dehydropantoate 2-r 95.6 0.14 3.1E-06 49.6 11.4 164 1-180 13-186 (305)
161 PRK08306 dipicolinate synthase 95.5 0.045 9.7E-07 52.8 7.6 80 1-107 163-243 (296)
162 PRK14188 bifunctional 5,10-met 95.4 0.025 5.3E-07 54.4 5.4 62 1-107 170-232 (296)
163 cd01487 E1_ThiF_like E1_ThiF_l 95.4 0.041 8.8E-07 48.8 6.3 86 1-94 10-112 (174)
164 KOG2653 6-phosphogluconate deh 95.3 0.084 1.8E-06 51.2 8.4 183 1-207 17-226 (487)
165 PRK08410 2-hydroxyacid dehydro 95.3 0.096 2.1E-06 50.9 9.0 99 1-130 156-259 (311)
166 PRK04148 hypothetical protein; 95.3 0.096 2.1E-06 44.2 7.8 85 2-106 28-112 (134)
167 PRK11790 D-3-phosphoglycerate 95.2 0.097 2.1E-06 52.9 9.1 100 1-129 162-266 (409)
168 cd05293 LDH_1 A subgroup of L- 95.2 0.055 1.2E-06 52.6 7.0 100 1-116 14-129 (312)
169 KOG2305 3-hydroxyacyl-CoA dehy 95.1 0.025 5.4E-07 51.5 4.1 53 302-355 188-240 (313)
170 PF02826 2-Hacid_dh_C: D-isome 95.0 0.069 1.5E-06 47.4 6.6 104 1-129 47-154 (178)
171 TIGR00507 aroE shikimate 5-deh 94.9 0.04 8.7E-07 52.4 5.2 107 1-131 128-236 (270)
172 PRK00066 ldh L-lactate dehydro 94.8 0.07 1.5E-06 51.9 6.7 98 2-116 18-131 (315)
173 COG4074 Mth H2-forming N5,N10- 94.8 1.6 3.5E-05 39.8 14.6 98 61-162 131-233 (343)
174 PF02558 ApbA: Ketopantoate re 94.8 0.13 2.8E-06 44.0 7.6 105 1-119 9-116 (151)
175 PRK14179 bifunctional 5,10-met 94.7 0.055 1.2E-06 51.6 5.4 62 1-107 170-232 (284)
176 PRK06932 glycerate dehydrogena 94.5 0.23 4.9E-06 48.4 9.5 98 1-129 158-260 (314)
177 PRK15409 bifunctional glyoxyla 94.5 0.39 8.5E-06 46.9 11.1 116 1-143 156-285 (323)
178 cd00401 AdoHcyase S-adenosyl-L 94.5 0.16 3.5E-06 51.1 8.5 77 1-105 213-289 (413)
179 PLN02602 lactate dehydrogenase 94.3 0.14 3.1E-06 50.5 7.6 62 2-78 49-114 (350)
180 cd05197 GH4_glycoside_hydrolas 94.2 0.22 4.7E-06 50.6 8.8 56 12-79 28-84 (425)
181 PRK06487 glycerate dehydrogena 94.1 0.26 5.5E-06 48.1 8.9 97 1-129 159-260 (317)
182 cd05296 GH4_P_beta_glucosidase 94.1 0.16 3.5E-06 51.4 7.6 55 13-79 29-85 (419)
183 TIGR01771 L-LDH-NAD L-lactate 94.1 0.11 2.3E-06 50.3 6.0 100 1-116 7-122 (299)
184 cd05298 GH4_GlvA_pagL_like Gly 94.1 0.25 5.4E-06 50.3 8.9 57 12-80 28-85 (437)
185 PRK00257 erythronate-4-phospha 94.0 0.22 4.8E-06 49.7 8.3 99 1-129 127-234 (381)
186 PRK08644 thiamine biosynthesis 93.6 0.11 2.3E-06 47.7 4.9 95 1-103 39-150 (212)
187 PRK05476 S-adenosyl-L-homocyst 93.4 0.21 4.5E-06 50.6 7.0 76 1-105 223-299 (425)
188 TIGR00936 ahcY adenosylhomocys 93.4 0.23 5E-06 49.9 7.2 87 1-116 206-296 (406)
189 PLN00112 malate dehydrogenase 93.3 0.57 1.2E-05 47.7 9.9 97 2-114 113-233 (444)
190 cd01078 NAD_bind_H4MPT_DH NADP 93.1 0.11 2.5E-06 46.6 4.1 31 1-31 40-70 (194)
191 cd01075 NAD_bind_Leu_Phe_Val_D 92.9 0.33 7.2E-06 44.0 6.9 74 1-102 39-113 (200)
192 PLN02306 hydroxypyruvate reduc 92.8 0.62 1.3E-05 46.7 9.3 117 1-129 176-299 (386)
193 cd05290 LDH_3 A subgroup of L- 92.8 0.41 8.9E-06 46.4 7.7 97 1-116 10-128 (307)
194 PTZ00075 Adenosylhomocysteinas 92.8 0.28 6.1E-06 50.1 6.8 80 1-111 265-346 (476)
195 TIGR01757 Malate-DH_plant mala 92.6 0.86 1.9E-05 45.6 9.8 99 2-116 57-179 (387)
196 PRK06141 ornithine cyclodeamin 92.6 0.23 4.9E-06 48.4 5.7 82 1-106 136-220 (314)
197 PF02056 Glyco_hydro_4: Family 92.5 0.12 2.6E-06 46.1 3.3 56 13-80 28-84 (183)
198 TIGR01759 MalateDH-SF1 malate 92.2 0.55 1.2E-05 45.9 7.8 96 2-114 16-136 (323)
199 KOG2380 Prephenate dehydrogena 92.0 2.7 6E-05 40.9 11.9 141 1-168 63-218 (480)
200 PRK13302 putative L-aspartate 92.0 0.44 9.5E-06 45.4 6.8 60 1-82 17-80 (271)
201 PRK15438 erythronate-4-phospha 91.7 0.13 2.9E-06 51.2 2.9 99 1-129 127-234 (378)
202 PRK05442 malate dehydrogenase; 91.3 0.56 1.2E-05 45.9 6.8 96 1-114 16-137 (326)
203 PRK13255 thiopurine S-methyltr 91.1 0.73 1.6E-05 42.4 7.1 86 5-100 51-150 (218)
204 COG0059 IlvC Ketol-acid reduct 91.1 7.8 0.00017 37.3 13.8 168 2-200 30-225 (338)
205 cd05213 NAD_bind_Glutamyl_tRNA 91.0 0.85 1.8E-05 44.3 7.8 82 1-105 189-273 (311)
206 COG1052 LdhA Lactate dehydroge 91.0 0.37 8.1E-06 47.1 5.2 103 1-129 157-263 (324)
207 PF03059 NAS: Nicotianamine sy 90.8 0.56 1.2E-05 44.6 6.1 77 13-104 146-229 (276)
208 TIGR01758 MDH_euk_cyt malate d 90.7 0.69 1.5E-05 45.2 6.9 100 1-116 11-134 (324)
209 PF01488 Shikimate_DH: Shikima 90.6 0.33 7.2E-06 41.0 4.0 64 1-82 23-88 (135)
210 cd01338 MDH_choloroplast_like 90.5 0.65 1.4E-05 45.4 6.4 98 1-116 14-137 (322)
211 TIGR01772 MDH_euk_gproteo mala 90.4 0.9 1.9E-05 44.2 7.3 84 1-103 11-114 (312)
212 COG0039 Mdh Malate/lactate deh 90.2 0.96 2.1E-05 43.8 7.2 96 1-114 11-125 (313)
213 smart00859 Semialdhyde_dh Semi 90.2 1.2 2.5E-05 36.6 6.9 41 68-110 64-104 (122)
214 PRK00258 aroE shikimate 5-dehy 90.1 0.27 5.9E-06 46.9 3.4 97 1-116 134-232 (278)
215 COG0623 FabI Enoyl-[acyl-carri 90.1 1.4 3.1E-05 40.5 7.7 160 2-175 21-191 (259)
216 PF12847 Methyltransf_18: Meth 90.0 1.1 2.4E-05 35.7 6.5 85 4-104 14-110 (112)
217 PLN02494 adenosylhomocysteinas 89.8 1.3 2.9E-05 45.2 8.1 76 1-105 265-341 (477)
218 cd00704 MDH Malate dehydrogena 89.8 0.41 9E-06 46.8 4.4 99 1-116 12-135 (323)
219 PRK09310 aroDE bifunctional 3- 89.5 0.87 1.9E-05 47.0 6.7 62 1-83 343-404 (477)
220 cd01336 MDH_cytoplasmic_cytoso 89.2 1.1 2.4E-05 43.8 6.9 100 2-116 15-137 (325)
221 cd01337 MDH_glyoxysomal_mitoch 89.1 1.6 3.5E-05 42.4 7.9 84 2-104 13-116 (310)
222 TIGR03840 TMPT_Se_Te thiopurin 89.0 1.5 3.2E-05 40.1 7.3 86 5-100 48-147 (213)
223 PRK13256 thiopurine S-methyltr 89.0 0.9 2E-05 42.0 5.8 89 6-102 58-160 (226)
224 COG1064 AdhP Zn-dependent alco 88.9 13 0.00028 36.5 13.8 123 4-167 180-308 (339)
225 cd05212 NAD_bind_m-THF_DH_Cycl 88.8 1.1 2.5E-05 38.1 5.9 71 12-107 27-102 (140)
226 PRK12549 shikimate 5-dehydroge 88.7 0.64 1.4E-05 44.6 4.8 64 1-80 138-203 (284)
227 PLN00106 malate dehydrogenase 88.7 1.9 4.2E-05 42.1 8.2 83 2-103 31-133 (323)
228 COG1748 LYS9 Saccharopine dehy 88.4 0.6 1.3E-05 46.6 4.4 84 1-103 12-97 (389)
229 TIGR02371 ala_DH_arch alanine 88.3 1.2 2.7E-05 43.5 6.6 73 11-107 151-224 (325)
230 COG0569 TrkA K+ transport syst 88.2 1.7 3.6E-05 40.2 7.0 87 1-107 11-103 (225)
231 COG2227 UbiG 2-polyprenyl-3-me 88.0 1.1 2.5E-05 41.4 5.7 87 2-106 70-162 (243)
232 PLN00135 malate dehydrogenase 87.7 2.4 5.2E-05 41.2 8.1 87 13-115 13-116 (309)
233 TIGR00518 alaDH alanine dehydr 87.6 0.33 7.3E-06 48.3 2.1 87 1-105 178-267 (370)
234 PF13460 NAD_binding_10: NADH( 87.1 0.4 8.7E-06 42.1 2.2 28 1-28 10-37 (183)
235 PRK13304 L-aspartate dehydroge 87.0 3.2 7E-05 39.3 8.4 77 1-103 12-92 (265)
236 PRK08618 ornithine cyclodeamin 87.0 1.2 2.5E-05 43.6 5.5 82 2-107 139-223 (325)
237 PRK03659 glutathione-regulated 86.1 4.8 0.0001 42.9 10.0 87 1-105 411-499 (601)
238 KOG1014 17 beta-hydroxysteroid 85.9 1.4 3E-05 42.3 5.2 36 1-36 61-96 (312)
239 PLN03075 nicotianamine synthas 85.8 3 6.4E-05 40.2 7.4 106 13-133 149-266 (296)
240 COG0300 DltE Short-chain dehyd 85.6 1.3 2.8E-05 42.0 4.8 35 1-35 18-52 (265)
241 COG0499 SAM1 S-adenosylhomocys 85.3 2 4.3E-05 42.1 5.9 81 2-111 221-301 (420)
242 PRK10669 putative cation:proto 85.2 3.2 6.9E-05 43.7 8.1 85 1-103 428-514 (558)
243 TIGR01809 Shik-DH-AROM shikima 85.2 3.5 7.7E-05 39.4 7.7 65 1-81 136-202 (282)
244 TIGR02992 ectoine_eutC ectoine 85.0 1.6 3.6E-05 42.6 5.5 81 2-105 141-224 (326)
245 TIGR01035 hemA glutamyl-tRNA r 84.7 2.2 4.8E-05 43.3 6.4 29 1-29 191-220 (417)
246 PF02882 THF_DHG_CYH_C: Tetrah 84.4 1.4 3E-05 38.5 4.1 36 65-107 75-110 (160)
247 TIGR01470 cysG_Nterm siroheme 84.2 7.4 0.00016 35.4 9.0 120 2-160 21-142 (205)
248 PF02254 TrkA_N: TrkA-N domain 84.1 3.2 7E-05 33.4 6.1 87 1-105 9-97 (116)
249 COG1486 CelF Alpha-galactosida 84.0 1.5 3.3E-05 44.2 4.8 132 12-165 31-187 (442)
250 PRK12828 short chain dehydroge 83.9 1.4 3E-05 40.1 4.1 29 1-29 19-47 (239)
251 PF03720 UDPG_MGDP_dh_C: UDP-g 83.7 2.1 4.6E-05 34.4 4.7 84 3-108 20-104 (106)
252 cd01080 NAD_bind_m-THF_DH_Cycl 83.5 2.8 6E-05 36.9 5.7 65 2-110 57-121 (168)
253 PF13561 adh_short_C2: Enoyl-( 83.5 1.3 2.9E-05 40.7 4.0 35 1-35 8-42 (241)
254 PRK14175 bifunctional 5,10-met 83.5 3.2 6.9E-05 39.8 6.5 63 1-107 170-232 (286)
255 PRK00045 hemA glutamyl-tRNA re 83.4 3.3 7.2E-05 42.0 7.1 59 1-80 193-253 (423)
256 PRK09424 pntA NAD(P) transhydr 83.2 4.2 9.2E-05 42.2 7.8 29 2-30 177-205 (509)
257 PTZ00325 malate dehydrogenase; 83.2 2.9 6.3E-05 40.8 6.3 21 1-21 20-42 (321)
258 PRK07062 short chain dehydroge 82.4 2 4.2E-05 40.1 4.7 32 1-32 20-51 (265)
259 PRK06194 hypothetical protein; 82.3 4.9 0.00011 37.9 7.4 32 1-32 18-49 (287)
260 PRK11207 tellurite resistance 82.3 6.2 0.00014 35.4 7.7 80 5-101 44-130 (197)
261 PRK05086 malate dehydrogenase; 82.2 2.2 4.9E-05 41.4 5.1 91 1-111 12-122 (312)
262 PRK14189 bifunctional 5,10-met 82.2 1.8 3.9E-05 41.4 4.3 36 65-107 197-232 (285)
263 PF00107 ADH_zinc_N: Zinc-bind 81.6 2.4 5.2E-05 34.8 4.4 79 2-105 3-89 (130)
264 PRK14178 bifunctional 5,10-met 81.2 3.7 8E-05 39.2 5.9 36 65-107 191-226 (279)
265 PRK07340 ornithine cyclodeamin 80.9 4.5 9.8E-05 39.1 6.7 81 1-107 136-219 (304)
266 cd01079 NAD_bind_m-THF_DH NAD 80.7 5.8 0.00012 35.7 6.7 79 1-109 74-160 (197)
267 TIGR00477 tehB tellurite resis 80.6 8.8 0.00019 34.4 8.1 79 5-100 44-128 (195)
268 COG0169 AroE Shikimate 5-dehyd 80.4 2.4 5.2E-05 40.6 4.5 63 2-81 138-202 (283)
269 PRK14192 bifunctional 5,10-met 80.3 4.8 0.0001 38.6 6.5 62 2-107 172-233 (283)
270 TIGR00561 pntA NAD(P) transhyd 80.1 5.1 0.00011 41.6 7.0 97 2-106 176-285 (511)
271 PRK06718 precorrin-2 dehydroge 79.2 18 0.00039 32.7 9.7 118 2-160 22-142 (202)
272 PLN02780 ketoreductase/ oxidor 79.2 3 6.4E-05 40.6 4.8 33 1-33 65-97 (320)
273 COG2423 Predicted ornithine cy 79.0 3.4 7.3E-05 40.5 5.1 70 13-105 155-225 (330)
274 PRK06407 ornithine cyclodeamin 79.0 7 0.00015 37.8 7.3 70 15-107 144-214 (301)
275 KOG0069 Glyoxylate/hydroxypyru 78.6 23 0.00051 34.7 10.6 131 1-156 173-315 (336)
276 TIGR02356 adenyl_thiF thiazole 78.1 5.6 0.00012 36.0 6.0 23 1-23 32-55 (202)
277 PRK08340 glucose-1-dehydrogena 78.0 3.3 7.2E-05 38.5 4.6 33 1-33 12-44 (259)
278 PRK06196 oxidoreductase; Provi 78.0 3.6 7.9E-05 39.6 5.0 33 1-33 38-70 (315)
279 KOG1201 Hydroxysteroid 17-beta 77.9 2.6 5.7E-05 40.3 3.8 35 1-35 50-84 (300)
280 COG0190 FolD 5,10-methylene-te 77.8 2 4.2E-05 40.9 2.9 63 1-107 168-230 (283)
281 PRK03692 putative UDP-N-acetyl 77.5 17 0.00038 33.9 9.2 82 10-102 102-188 (243)
282 PRK12475 thiamine/molybdopteri 77.4 6.6 0.00014 38.6 6.7 23 1-23 35-58 (338)
283 PRK12829 short chain dehydroge 77.3 8.3 0.00018 35.6 7.1 29 1-29 23-51 (264)
284 PF03848 TehB: Tellurite resis 77.2 3.9 8.5E-05 36.8 4.6 81 5-103 44-131 (192)
285 PRK08339 short chain dehydroge 77.0 3.9 8.4E-05 38.3 4.8 32 1-32 20-51 (263)
286 PRK07589 ornithine cyclodeamin 77.0 7.9 0.00017 38.2 7.0 70 13-107 154-227 (346)
287 PRK08291 ectoine utilization p 76.7 4.5 9.7E-05 39.6 5.3 62 2-80 144-208 (330)
288 PRK08862 short chain dehydroge 75.7 4.3 9.2E-05 37.3 4.6 33 1-33 17-49 (227)
289 PRK11036 putative S-adenosyl-L 75.7 13 0.00028 34.7 8.0 83 4-102 57-146 (255)
290 KOG1495 Lactate dehydrogenase 75.3 17 0.00036 34.5 8.1 91 2-105 32-137 (332)
291 COG4091 Predicted homoserine d 75.0 40 0.00087 33.3 10.9 138 1-169 28-184 (438)
292 PRK06823 ornithine cyclodeamin 74.9 9.3 0.0002 37.2 6.9 71 13-107 153-224 (315)
293 PRK14190 bifunctional 5,10-met 74.9 7.7 0.00017 37.1 6.1 36 65-107 197-232 (284)
294 PRK12548 shikimate 5-dehydroge 74.9 3.3 7.3E-05 39.7 3.8 24 1-24 137-161 (289)
295 PRK06079 enoyl-(acyl carrier p 74.8 3.2 6.9E-05 38.6 3.5 23 1-23 21-43 (252)
296 PRK09496 trkA potassium transp 74.4 9.1 0.0002 38.9 7.1 85 1-103 242-329 (453)
297 PRK09496 trkA potassium transp 74.1 9.7 0.00021 38.7 7.2 85 1-103 11-98 (453)
298 PLN00016 RNA-binding protein; 74.0 5.9 0.00013 39.3 5.4 26 1-26 68-93 (378)
299 PRK03562 glutathione-regulated 73.7 13 0.00028 39.8 8.1 85 1-103 411-497 (621)
300 PLN00203 glutamyl-tRNA reducta 73.3 3.9 8.5E-05 42.6 4.0 29 1-29 277-306 (519)
301 PRK07063 short chain dehydroge 73.2 5.3 0.00012 37.0 4.7 33 1-33 19-51 (260)
302 PRK05854 short chain dehydroge 72.6 5.5 0.00012 38.4 4.7 34 1-34 26-59 (313)
303 PRK07825 short chain dehydroge 72.5 5.3 0.00012 37.4 4.5 30 1-30 17-46 (273)
304 PLN02516 methylenetetrahydrofo 72.4 7.7 0.00017 37.4 5.5 36 65-107 206-241 (299)
305 COG1712 Predicted dinucleotide 71.9 6 0.00013 36.4 4.4 87 2-116 12-103 (255)
306 PF02423 OCD_Mu_crystall: Orni 71.8 5.5 0.00012 38.7 4.5 72 14-107 154-226 (313)
307 PRK07478 short chain dehydroge 71.8 6.2 0.00013 36.4 4.7 31 1-31 18-48 (254)
308 PRK08945 putative oxoacyl-(acy 71.7 6.7 0.00014 36.0 4.9 29 1-29 24-52 (247)
309 PRK06720 hypothetical protein; 71.4 7 0.00015 34.2 4.7 29 1-29 28-56 (169)
310 PRK14177 bifunctional 5,10-met 70.9 8.7 0.00019 36.7 5.4 36 65-107 198-233 (284)
311 PRK14186 bifunctional 5,10-met 70.7 8.6 0.00019 37.1 5.4 36 65-107 197-232 (297)
312 PRK14176 bifunctional 5,10-met 70.6 9 0.00019 36.7 5.5 36 65-107 203-238 (287)
313 PRK07831 short chain dehydroge 70.4 7 0.00015 36.3 4.8 33 1-33 30-62 (262)
314 PRK07890 short chain dehydroge 70.3 7.3 0.00016 35.9 4.9 31 1-31 17-47 (258)
315 PRK06603 enoyl-(acyl carrier p 70.3 7.4 0.00016 36.3 4.9 23 1-23 22-44 (260)
316 PF03435 Saccharop_dh: Sacchar 70.2 1.8 3.9E-05 43.2 0.7 30 1-30 9-40 (386)
317 PRK07074 short chain dehydroge 70.2 4.3 9.4E-05 37.5 3.3 30 1-30 14-43 (257)
318 PRK05867 short chain dehydroge 69.9 6.6 0.00014 36.3 4.4 30 1-30 21-50 (253)
319 TIGR00696 wecB_tagA_cpsF bacte 69.8 23 0.0005 31.4 7.6 83 9-101 44-130 (177)
320 PRK08085 gluconate 5-dehydroge 69.8 7 0.00015 36.1 4.6 31 1-31 21-51 (254)
321 PRK14170 bifunctional 5,10-met 69.6 10 0.00022 36.4 5.5 36 65-107 196-231 (284)
322 PRK14180 bifunctional 5,10-met 69.4 9.7 0.00021 36.4 5.4 36 65-107 197-232 (282)
323 PRK07984 enoyl-(acyl carrier p 69.4 7.2 0.00016 36.6 4.6 23 1-23 20-42 (262)
324 PRK05876 short chain dehydroge 69.3 7.6 0.00016 36.7 4.8 30 1-30 18-47 (275)
325 PRK14169 bifunctional 5,10-met 68.9 9.3 0.0002 36.5 5.2 36 65-107 195-230 (282)
326 PRK14174 bifunctional 5,10-met 68.7 11 0.00024 36.3 5.7 36 65-107 202-237 (295)
327 PRK06139 short chain dehydroge 68.7 7.4 0.00016 38.0 4.7 33 1-33 19-51 (330)
328 COG4221 Short-chain alcohol de 68.6 7.3 0.00016 36.3 4.3 34 1-34 18-51 (246)
329 PRK14191 bifunctional 5,10-met 68.5 13 0.00027 35.7 6.0 35 65-106 196-230 (285)
330 PRK06199 ornithine cyclodeamin 68.4 3.9 8.4E-05 40.9 2.6 51 14-79 182-233 (379)
331 PRK06124 gluconate 5-dehydroge 68.2 8.4 0.00018 35.5 4.8 30 1-30 23-52 (256)
332 PRK08703 short chain dehydroge 68.2 8.5 0.00018 35.1 4.8 29 1-29 18-46 (239)
333 KOG1200 Mitochondrial/plastidi 68.1 32 0.00069 31.2 7.9 29 1-29 26-54 (256)
334 KOG2711 Glycerol-3-phosphate d 68.1 17 0.00037 35.5 6.8 116 56-173 91-219 (372)
335 PRK08265 short chain dehydroge 67.8 7 0.00015 36.4 4.2 30 1-30 18-47 (261)
336 PLN03209 translocon at the inn 67.7 4.1 8.8E-05 42.9 2.7 31 1-31 92-122 (576)
337 PRK07523 gluconate 5-dehydroge 67.5 8.5 0.00019 35.5 4.7 30 1-30 22-51 (255)
338 PRK10792 bifunctional 5,10-met 67.5 14 0.0003 35.4 6.0 34 65-105 198-231 (285)
339 PRK07814 short chain dehydroge 67.5 8.6 0.00019 35.8 4.7 30 1-30 22-51 (263)
340 KOG0725 Reductases with broad 67.4 8.6 0.00019 36.5 4.7 31 1-31 20-50 (270)
341 PRK06172 short chain dehydroge 67.4 9 0.0002 35.2 4.8 30 1-30 19-48 (253)
342 PF01113 DapB_N: Dihydrodipico 67.3 12 0.00026 30.9 5.0 92 1-113 12-106 (124)
343 PRK14027 quinate/shikimate deh 67.1 6.2 0.00013 37.8 3.7 29 2-30 139-168 (283)
344 PLN02585 magnesium protoporphy 67.0 90 0.0019 30.4 11.7 30 5-34 158-187 (315)
345 PRK07231 fabG 3-ketoacyl-(acyl 66.7 8.9 0.00019 35.0 4.6 30 1-30 17-46 (251)
346 PRK14172 bifunctional 5,10-met 66.7 11 0.00024 35.9 5.2 34 65-105 197-230 (278)
347 PRK06125 short chain dehydroge 66.7 9.3 0.0002 35.4 4.8 31 1-31 19-49 (259)
348 PRK06200 2,3-dihydroxy-2,3-dih 66.6 7.6 0.00017 36.1 4.2 29 1-29 18-46 (263)
349 PRK08643 acetoin reductase; Va 66.6 9.5 0.00021 35.2 4.8 30 1-30 14-43 (256)
350 PRK14173 bifunctional 5,10-met 66.6 12 0.00027 35.8 5.5 36 65-107 194-229 (287)
351 cd06533 Glyco_transf_WecG_TagA 66.5 39 0.00084 29.6 8.4 84 9-102 42-130 (171)
352 PRK13394 3-hydroxybutyrate deh 66.3 9 0.0002 35.3 4.6 32 1-32 19-50 (262)
353 PRK05562 precorrin-2 dehydroge 66.3 34 0.00074 31.5 8.2 114 7-160 42-158 (223)
354 PRK14182 bifunctional 5,10-met 66.0 12 0.00026 35.7 5.3 36 65-107 196-231 (282)
355 KOG1370 S-adenosylhomocysteine 65.8 21 0.00045 34.5 6.7 79 2-110 226-305 (434)
356 PRK07774 short chain dehydroge 65.1 10 0.00022 34.8 4.6 29 1-29 18-46 (250)
357 PRK07677 short chain dehydroge 65.1 11 0.00023 34.9 4.8 30 1-30 13-42 (252)
358 TIGR01777 yfcH conserved hypot 65.0 13 0.00029 34.8 5.5 27 1-27 10-36 (292)
359 PRK05866 short chain dehydroge 64.9 9.8 0.00021 36.3 4.6 31 1-31 52-82 (293)
360 PRK07832 short chain dehydroge 64.8 10 0.00022 35.5 4.7 30 1-30 12-41 (272)
361 PRK08415 enoyl-(acyl carrier p 64.7 7.1 0.00015 36.9 3.6 24 1-24 19-42 (274)
362 COG2264 PrmA Ribosomal protein 64.7 49 0.0011 31.9 9.2 92 2-111 172-267 (300)
363 PRK14166 bifunctional 5,10-met 64.7 12 0.00027 35.7 5.1 34 65-105 196-229 (282)
364 PRK06153 hypothetical protein; 64.5 12 0.00025 37.5 5.0 22 1-22 187-209 (393)
365 PRK09186 flagellin modificatio 64.5 10 0.00023 34.8 4.6 31 1-31 16-46 (256)
366 PRK12335 tellurite resistance 64.5 24 0.00051 33.7 7.2 79 5-101 134-219 (287)
367 PRK08277 D-mannonate oxidoredu 64.5 10 0.00022 35.6 4.5 29 1-29 22-50 (278)
368 PRK08263 short chain dehydroge 64.5 6.5 0.00014 36.9 3.3 29 1-29 15-43 (275)
369 PRK07102 short chain dehydroge 64.3 10 0.00023 34.6 4.6 30 1-30 13-42 (243)
370 PRK12384 sorbitol-6-phosphate 64.3 10 0.00022 35.0 4.6 30 1-30 14-43 (259)
371 PRK05884 short chain dehydroge 64.2 8.9 0.00019 34.9 4.0 30 1-30 12-41 (223)
372 PF08123 DOT1: Histone methyla 64.2 16 0.00035 33.2 5.6 106 1-111 53-163 (205)
373 PRK09072 short chain dehydroge 64.2 10 0.00022 35.2 4.5 29 1-29 17-45 (263)
374 TIGR00537 hemK_rel_arch HemK-r 64.0 40 0.00086 29.4 8.1 96 5-117 33-153 (179)
375 PRK12429 3-hydroxybutyrate deh 63.8 11 0.00023 34.6 4.6 31 1-31 16-46 (258)
376 PRK07326 short chain dehydroge 63.8 11 0.00024 34.1 4.6 30 1-30 18-47 (237)
377 PRK07067 sorbitol dehydrogenas 63.6 9.7 0.00021 35.2 4.2 30 1-30 18-47 (257)
378 PRK07109 short chain dehydroge 63.6 11 0.00023 36.9 4.7 33 1-33 20-52 (334)
379 KOG3124 Pyrroline-5-carboxylat 63.4 75 0.0016 29.9 9.8 98 61-164 53-155 (267)
380 PRK07097 gluconate 5-dehydroge 63.3 12 0.00025 34.9 4.7 30 1-30 22-51 (265)
381 CHL00194 ycf39 Ycf39; Provisio 63.2 19 0.00041 34.7 6.3 26 1-26 12-37 (317)
382 PRK06046 alanine dehydrogenase 63.2 12 0.00026 36.6 4.9 82 2-107 141-225 (326)
383 KOG1270 Methyltransferases [Co 63.0 14 0.00029 34.9 4.9 88 4-102 102-192 (282)
384 COG1063 Tdh Threonine dehydrog 62.9 21 0.00047 35.1 6.7 25 6-30 185-210 (350)
385 PRK09242 tropinone reductase; 62.8 12 0.00027 34.5 4.8 31 1-31 21-51 (257)
386 PRK08217 fabG 3-ketoacyl-(acyl 62.8 12 0.00025 34.3 4.6 30 1-30 17-46 (253)
387 PRK14183 bifunctional 5,10-met 62.8 15 0.00032 35.2 5.2 36 65-107 196-231 (281)
388 PRK14171 bifunctional 5,10-met 62.7 15 0.00032 35.3 5.2 34 65-105 198-231 (288)
389 PRK07576 short chain dehydroge 62.4 12 0.00026 34.9 4.6 29 1-29 21-49 (264)
390 PRK14193 bifunctional 5,10-met 62.4 15 0.00033 35.1 5.3 36 65-107 199-234 (284)
391 PRK07454 short chain dehydroge 62.3 13 0.00027 34.0 4.7 29 1-29 18-46 (241)
392 PF10728 DUF2520: Domain of un 62.2 31 0.00068 29.0 6.6 58 147-204 9-74 (132)
393 PLN02616 tetrahydrofolate dehy 62.2 14 0.0003 36.5 5.1 34 65-105 270-303 (364)
394 COG0373 HemA Glutamyl-tRNA red 62.2 11 0.00024 38.0 4.5 30 1-30 189-219 (414)
395 PF03808 Glyco_tran_WecB: Glyc 62.1 30 0.00064 30.4 6.8 92 8-110 43-139 (172)
396 PRK14184 bifunctional 5,10-met 62.0 16 0.00034 35.1 5.3 34 65-105 200-233 (286)
397 PRK07035 short chain dehydroge 61.9 13 0.00028 34.1 4.8 30 1-30 20-49 (252)
398 TIGR03325 BphB_TodD cis-2,3-di 61.8 10 0.00022 35.3 4.0 29 1-29 17-45 (262)
399 PRK05599 hypothetical protein; 61.7 12 0.00025 34.6 4.4 32 1-33 12-43 (246)
400 PRK06197 short chain dehydroge 61.6 13 0.00028 35.6 4.8 33 1-33 28-60 (306)
401 PLN02897 tetrahydrofolate dehy 61.6 16 0.00035 35.9 5.4 36 65-107 253-288 (345)
402 PRK13940 glutamyl-tRNA reducta 61.4 9.8 0.00021 38.6 4.0 29 1-29 192-221 (414)
403 PRK08213 gluconate 5-dehydroge 61.4 12 0.00027 34.5 4.5 30 1-30 24-53 (259)
404 PRK08251 short chain dehydroge 61.3 13 0.00028 34.0 4.6 30 1-30 14-43 (248)
405 PRK05650 short chain dehydroge 61.3 13 0.00029 34.6 4.8 30 1-30 12-41 (270)
406 PF03853 YjeF_N: YjeF-related 61.2 9.1 0.0002 33.5 3.4 94 2-111 41-146 (169)
407 PRK06101 short chain dehydroge 61.2 10 0.00023 34.7 3.9 28 1-28 13-40 (240)
408 PF05724 TPMT: Thiopurine S-me 61.1 9.6 0.00021 35.0 3.6 83 6-100 52-150 (218)
409 PRK07024 short chain dehydroge 61.0 10 0.00022 35.1 3.9 29 1-29 14-42 (257)
410 PRK03522 rumB 23S rRNA methylu 60.8 99 0.0022 29.9 10.9 117 4-141 186-309 (315)
411 PRK14187 bifunctional 5,10-met 60.7 16 0.00034 35.2 5.1 34 65-105 199-232 (294)
412 PRK14967 putative methyltransf 60.7 50 0.0011 30.0 8.4 29 5-33 50-79 (223)
413 PRK12939 short chain dehydroge 60.7 14 0.0003 33.7 4.7 31 1-31 19-49 (250)
414 PRK14181 bifunctional 5,10-met 60.2 17 0.00036 34.9 5.1 36 65-107 196-231 (287)
415 PRK13886 conjugal transfer pro 60.1 1E+02 0.0022 28.7 10.3 23 4-26 22-44 (241)
416 PRK08589 short chain dehydroge 59.8 14 0.0003 34.6 4.6 29 1-30 18-46 (272)
417 cd05191 NAD_bind_amino_acid_DH 59.4 29 0.00062 26.4 5.5 29 71-103 56-84 (86)
418 PF05368 NmrA: NmrA-like famil 59.3 29 0.00063 31.5 6.6 24 1-24 10-33 (233)
419 PRK00048 dihydrodipicolinate r 59.3 17 0.00036 34.3 5.0 26 1-26 13-40 (257)
420 PRK07069 short chain dehydroge 59.3 14 0.00031 33.7 4.5 29 1-29 11-40 (251)
421 PRK02318 mannitol-1-phosphate 59.2 11 0.00023 37.8 3.9 29 1-29 11-40 (381)
422 TIGR01756 LDH_protist lactate 59.1 25 0.00055 34.2 6.3 52 61-114 51-117 (313)
423 cd05311 NAD_bind_2_malic_enz N 59.1 15 0.00032 33.9 4.5 23 1-23 36-61 (226)
424 PRK00811 spermidine synthase; 59.0 42 0.00092 32.0 7.8 93 3-107 88-193 (283)
425 PRK12826 3-ketoacyl-(acyl-carr 58.9 16 0.00035 33.2 4.8 29 1-29 18-46 (251)
426 PRK06949 short chain dehydroge 58.6 15 0.00033 33.7 4.6 30 1-30 21-50 (258)
427 COG2910 Putative NADH-flavin r 58.3 18 0.00039 32.4 4.5 61 2-80 13-73 (211)
428 PRK05872 short chain dehydroge 58.2 13 0.00029 35.3 4.3 30 1-30 21-50 (296)
429 PRK07041 short chain dehydroge 58.1 16 0.00034 33.0 4.6 29 1-29 9-37 (230)
430 PRK00517 prmA ribosomal protei 58.0 87 0.0019 29.1 9.6 77 6-103 134-211 (250)
431 PRK07453 protochlorophyllide o 57.9 13 0.00029 35.7 4.3 33 1-33 18-50 (322)
432 PRK07370 enoyl-(acyl carrier p 57.8 15 0.00033 34.1 4.5 24 1-24 20-43 (258)
433 COG0078 ArgF Ornithine carbamo 57.8 32 0.0007 33.1 6.5 69 1-87 165-239 (310)
434 PRK08267 short chain dehydroge 57.8 15 0.00032 34.0 4.4 30 1-30 13-42 (260)
435 PF01118 Semialdhyde_dh: Semia 57.7 6.4 0.00014 32.3 1.7 42 64-110 61-102 (121)
436 TIGR02632 RhaD_aldol-ADH rhamn 57.6 15 0.00032 39.8 4.8 30 1-30 426-455 (676)
437 KOG1208 Dehydrogenases with di 57.3 17 0.00037 35.4 4.8 35 1-35 47-81 (314)
438 PRK06057 short chain dehydroge 57.2 14 0.0003 34.1 4.1 29 1-29 19-47 (255)
439 PRK07688 thiamine/molybdopteri 57.2 12 0.00025 36.9 3.6 23 1-23 35-58 (339)
440 PRK14106 murD UDP-N-acetylmura 57.0 21 0.00046 36.2 5.7 23 1-23 16-38 (450)
441 TIGR03366 HpnZ_proposed putati 56.9 63 0.0014 30.3 8.6 29 2-30 133-162 (280)
442 TIGR01500 sepiapter_red sepiap 56.8 18 0.00038 33.5 4.7 31 1-31 12-46 (256)
443 PRK08594 enoyl-(acyl carrier p 56.7 9.9 0.00022 35.4 3.0 23 1-23 21-43 (257)
444 smart00138 MeTrc Methyltransfe 56.5 84 0.0018 29.6 9.3 98 4-105 116-242 (264)
445 PRK15451 tRNA cmo(5)U34 methyl 56.4 93 0.002 28.8 9.5 76 12-103 81-162 (247)
446 PRK08159 enoyl-(acyl carrier p 56.4 18 0.00038 34.1 4.7 23 1-23 24-46 (272)
447 cd01483 E1_enzyme_family Super 56.1 19 0.00042 30.2 4.4 23 1-23 10-33 (143)
448 PRK06914 short chain dehydroge 55.8 18 0.00038 33.9 4.6 29 1-29 15-43 (280)
449 PLN02253 xanthoxin dehydrogena 55.5 16 0.00035 34.2 4.3 29 1-29 30-58 (280)
450 PRK06138 short chain dehydroge 55.5 18 0.00038 33.1 4.5 29 1-29 17-45 (252)
451 PRK07904 short chain dehydroge 55.5 15 0.00033 34.0 4.1 31 1-31 20-52 (253)
452 PRK05653 fabG 3-ketoacyl-(acyl 55.4 18 0.00039 32.7 4.5 30 1-30 17-46 (246)
453 PRK06505 enoyl-(acyl carrier p 55.3 18 0.00039 34.0 4.6 25 1-25 21-45 (271)
454 PRK12550 shikimate 5-dehydroge 55.1 34 0.00073 32.6 6.3 28 2-29 134-162 (272)
455 PRK06500 short chain dehydroge 55.1 16 0.00036 33.2 4.2 29 1-29 18-46 (249)
456 PRK10611 chemotaxis methyltran 55.0 48 0.001 31.8 7.4 99 4-106 132-263 (287)
457 PRK02472 murD UDP-N-acetylmura 54.6 51 0.0011 33.4 8.1 25 1-25 16-40 (447)
458 PRK07666 fabG 3-ketoacyl-(acyl 54.6 23 0.0005 32.2 5.0 30 1-30 19-48 (239)
459 PRK06719 precorrin-2 dehydroge 54.6 1.1E+02 0.0023 26.5 8.9 113 2-160 25-142 (157)
460 TIGR03206 benzo_BadH 2-hydroxy 54.6 19 0.00041 32.8 4.5 30 1-30 15-44 (250)
461 PRK05875 short chain dehydroge 54.6 20 0.00043 33.4 4.7 30 1-30 19-48 (276)
462 PF13450 NAD_binding_8: NAD(P) 54.4 14 0.00029 27.1 2.8 23 2-24 8-30 (68)
463 PRK05786 fabG 3-ketoacyl-(acyl 54.1 21 0.00046 32.3 4.7 29 1-29 17-45 (238)
464 PRK12749 quinate/shikimate deh 54.0 16 0.00036 35.0 4.0 28 2-29 136-164 (288)
465 PRK07889 enoyl-(acyl carrier p 53.7 13 0.00028 34.6 3.2 23 1-23 21-43 (256)
466 cd01076 NAD_bind_1_Glu_DH NAD( 53.6 40 0.00086 31.1 6.4 21 1-21 42-63 (227)
467 cd05188 MDR Medium chain reduc 53.0 42 0.00091 30.6 6.6 28 2-29 147-174 (271)
468 TIGR01289 LPOR light-dependent 52.7 19 0.00041 34.7 4.3 31 1-31 15-46 (314)
469 KOG2666 UDP-glucose/GDP-mannos 52.6 2.4E+02 0.0051 27.7 14.4 177 13-204 26-251 (481)
470 COG1648 CysG Siroheme synthase 52.4 1.1E+02 0.0023 28.0 8.9 115 6-160 28-145 (210)
471 PLN00015 protochlorophyllide r 52.1 20 0.00043 34.4 4.4 32 1-32 9-41 (308)
472 PRK06940 short chain dehydroge 52.1 20 0.00044 33.7 4.4 32 1-33 13-44 (275)
473 PRK14968 putative methyltransf 52.1 78 0.0017 27.4 7.9 29 5-33 37-65 (188)
474 PRK01438 murD UDP-N-acetylmura 52.0 37 0.00079 34.9 6.5 23 2-24 28-50 (480)
475 PRK06180 short chain dehydroge 51.9 17 0.00037 34.1 3.8 29 1-29 16-44 (277)
476 PRK08416 7-alpha-hydroxysteroi 51.9 22 0.00048 32.9 4.5 30 1-30 20-50 (260)
477 PRK05993 short chain dehydroge 51.8 18 0.00038 34.0 3.9 29 1-29 16-44 (277)
478 PF00070 Pyr_redox: Pyridine n 51.8 22 0.00048 26.5 3.7 25 2-26 11-35 (80)
479 PRK06997 enoyl-(acyl carrier p 51.7 25 0.00054 32.8 4.8 22 1-22 20-41 (260)
480 PRK11873 arsM arsenite S-adeno 51.4 39 0.00084 31.7 6.2 73 14-103 103-181 (272)
481 TIGR01963 PHB_DH 3-hydroxybuty 51.4 25 0.00053 32.1 4.7 30 1-30 13-42 (255)
482 TIGR02415 23BDH acetoin reduct 51.4 25 0.00054 32.2 4.8 29 1-29 12-40 (254)
483 COG0686 Ald Alanine dehydrogen 51.3 17 0.00036 35.3 3.4 78 10-104 188-267 (371)
484 PRK14185 bifunctional 5,10-met 51.3 29 0.00064 33.4 5.2 36 65-107 200-235 (293)
485 PRK08017 oxidoreductase; Provi 51.2 19 0.00042 33.0 4.0 29 1-29 14-42 (256)
486 PRK05855 short chain dehydroge 51.1 20 0.00044 37.2 4.6 31 1-31 327-357 (582)
487 PRK05565 fabG 3-ketoacyl-(acyl 51.0 24 0.00052 32.0 4.6 30 1-30 17-47 (247)
488 TIGR00406 prmA ribosomal prote 50.9 77 0.0017 30.2 8.2 81 5-103 173-257 (288)
489 PRK08309 short chain dehydroge 50.5 24 0.00052 31.2 4.2 29 1-29 11-39 (177)
490 PRK08690 enoyl-(acyl carrier p 50.3 22 0.00047 33.1 4.2 23 1-23 20-42 (261)
491 PRK08177 short chain dehydroge 50.3 15 0.00032 33.2 3.0 28 1-28 13-40 (225)
492 PF01262 AlaDh_PNT_C: Alanine 50.3 2.2 4.7E-05 37.4 -2.5 102 2-105 32-139 (168)
493 COG1092 Predicted SAM-dependen 50.2 1.1E+02 0.0025 30.7 9.4 30 4-33 230-260 (393)
494 PRK10538 malonic semialdehyde 50.1 26 0.00056 32.1 4.6 28 2-29 13-40 (248)
495 PRK07060 short chain dehydroge 50.1 23 0.00051 32.1 4.3 28 1-28 21-48 (245)
496 PRK06953 short chain dehydroge 49.9 22 0.00048 32.0 4.1 28 1-28 13-40 (222)
497 PRK14168 bifunctional 5,10-met 49.4 32 0.0007 33.1 5.2 34 65-105 204-237 (297)
498 PRK06182 short chain dehydroge 49.2 20 0.00043 33.5 3.8 28 1-28 15-42 (273)
499 TIGR02085 meth_trns_rumB 23S r 48.8 91 0.002 31.1 8.5 81 4-103 246-332 (374)
500 KOG1502 Flavonol reductase/cin 48.4 19 0.00041 35.1 3.5 27 1-27 18-44 (327)
No 1
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=2.2e-88 Score=718.34 Aligned_cols=387 Identities=32% Similarity=0.539 Sum_probs=366.5
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||++||..++.+|++|+++|++++.+++++++|++.+++++++|.+++++.++.+++|+++++++++++||+|||||||+
T Consensus 346 MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEAv~E~ 425 (737)
T TIGR02441 346 MGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFKNADMVIEAVFED 425 (737)
T ss_pred hHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhccCCeehhhcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 160 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~~~ 160 (403)
+++|+++|++|++.++|+|||+||||++++++|++.+.+|+||+|+|||||++.|++||||+|+.||+++++++..|++.
T Consensus 426 l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~ 505 (737)
T TIGR02441 426 LSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLK 505 (737)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCchHHHHHHhhchHHHHHHHHHHHHhCCCCC
Q 015610 161 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERT 240 (403)
Q Consensus 161 lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~~~~~iD~a~~~~g~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~~ 240 (403)
+||.||+++|+||||+||++.++++||++++++|+++++||+++.++|+|||||+++|++|+|++.++.+.+++.+++++
T Consensus 506 lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D~vGld~~~~v~~~l~~~~~~~~ 585 (737)
T TIGR02441 506 QGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLADEVGVDVAEHVAEDLGKAFGERF 585 (737)
T ss_pred CCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999988765
Q ss_pred c--cccHHHHHHHcCCCccccCccccccCCCC--CCCCChhHHHHHHHHhhccCccCCccccccchHHHHHHHHHHHHHH
Q 015610 241 Y--KSMIIPIMQEDKRAGETTRKGFYLYDERR--KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNE 316 (403)
Q Consensus 241 ~--~~~~l~~~v~~G~~G~k~g~GFy~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~e 316 (403)
. |++++++|+++|++|+|+|+|||+|++++ ++.+++++.+++...... + .....++++|+||++.+++||
T Consensus 586 ~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k~----p--~~~~~~~g~I~~Rll~~~~nE 659 (737)
T TIGR02441 586 GGGSAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKLP----P--KAEVSSPEDIQIRLVSRFVNE 659 (737)
T ss_pred ccccCHHHHHHHHCCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhccC----c--ccccCChHHHHHHHHHHHHHH
Confidence 3 57899999999999999999999998653 467899988887654210 0 001247899999999999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHC-CCCcc
Q 015610 317 ACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGK-GATLS 393 (403)
Q Consensus 317 a~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~~~g~~~~p~~~l~~~~~~-g~~f~ 393 (403)
|++|++|||+.+|+|||.+|++|+|||+|+||||+|+|.+|++.+++.++.+++.+|++|.|+++|++|+++ |++||
T Consensus 660 A~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~~~~~~l~~~~g~~~~p~~lL~~~~~~~g~~f~ 737 (737)
T TIGR02441 660 AVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYGVQFTPCQLLLDHAKSPGKKFY 737 (737)
T ss_pred HHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHhcCCCCC
Confidence 999999999779999999999999999999999999999999999999999999999999999999999999 99997
No 2
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=4.2e-87 Score=707.17 Aligned_cols=384 Identities=34% Similarity=0.617 Sum_probs=360.9
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||++||..++.+|++|+++|++++.++++++++++.+++++++|.+++++.+..++||+++++++++++||+|||||||+
T Consensus 324 mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E~ 403 (714)
T TIGR02437 324 MGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVVEN 403 (714)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEEcCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 160 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~~~ 160 (403)
+++|+++|++|++.++|+|||+||||++++++|++.+.+|+||+|+|||||++.|||||||+|+.||+++++++.+|++.
T Consensus 404 l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~ 483 (714)
T TIGR02437 404 PKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYASK 483 (714)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCchHHHHHHhhchHHHHHHHHHHHHhCCCC
Q 015610 161 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAI-TKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 239 (403)
Q Consensus 161 lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~~~~~iD~a~-~~~g~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~ 239 (403)
+||.||+++|+|||++||++.++++||++++++|+++++||+++ .++|||||||+++|++|+|++.++.+.+++.++++
T Consensus 484 lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~~~~~~~~~ 563 (714)
T TIGR02437 484 MGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAVMAEGFPDR 563 (714)
T ss_pred cCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999 78999999999999999999999999999988876
Q ss_pred Cc--cccHHHHHHHcCCCccccCccccccCCC----CCCCCChhHHHHHHHHhhccCccCCccccccchHHHHHHHHHHH
Q 015610 240 TY--KSMIIPIMQEDKRAGETTRKGFYLYDER----RKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPV 313 (403)
Q Consensus 240 ~~--~~~~l~~~v~~G~~G~k~g~GFy~y~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~ 313 (403)
.. +++++++|+++|++|+|+|+|||+|++. .++..|+++..++...+.. ...++.++|+||++.++
T Consensus 564 ~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~Rll~~~ 635 (714)
T TIGR02437 564 MGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVYE--------QRDFDDEEIIARMMIPM 635 (714)
T ss_pred cccchhHHHHHHHHCCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhcc--------cCCCCHHHHHHHHHHHH
Confidence 42 4688999999999999999999999643 1356788887776543210 11367789999999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHCCCCcc
Q 015610 314 VNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGATLS 393 (403)
Q Consensus 314 ~~ea~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~~~g~~~~p~~~l~~~~~~g~~f~ 393 (403)
+||+++|++|||+.+|+|||.+|++|+|||+|+||||+|+|.+|++.+++.++.+. .+|++|.|+++|++++++|+.||
T Consensus 636 ~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~p~~~l~~~~~~g~~f~ 714 (714)
T TIGR02437 636 INETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQVTAKLREMAKNGQSFY 714 (714)
T ss_pred HHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCCCCHHHHHHHHcCCCCC
Confidence 99999999999777999999999999999999999999999999999999999765 78899999999999999999997
No 3
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=5.7e-86 Score=698.51 Aligned_cols=383 Identities=34% Similarity=0.583 Sum_probs=363.0
Q ss_pred ChHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCC
Q 015610 1 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la-~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e 79 (403)
||++||..++ ++|++|+++|++++.+++++.++++.+++++++|.+++++.+..+++|+++++++++++||+|||||||
T Consensus 315 mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~E 394 (699)
T TIGR02440 315 MGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFE 394 (699)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEeccc
Confidence 8999999999 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 159 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~~ 159 (403)
++++|+++|++|+++++++|||+||||++++++|++.+.+|+||+|+|||||++.+++||||+|+.|++++++++..|++
T Consensus 395 ~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~ 474 (699)
T TIGR02440 395 DLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAK 474 (699)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCchHHHHHHhhchHHHHHHHHHHHHhCCCC
Q 015610 160 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 239 (403)
Q Consensus 160 ~lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~~~~~iD~a~~~~g~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~ 239 (403)
.+||.||+++|+|||++||++.++++||++++++|+++++||.++.++|||+|||+++|.+|+|++.++.+.+++.++++
T Consensus 475 ~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~~ 554 (699)
T TIGR02440 475 KQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGER 554 (699)
T ss_pred HcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999987
Q ss_pred CccccHHHHHHHcCCCccccCccccccCCC-CCCCCChhHHHHHHHHhhccCccCCccccccchHHHHHHHHHHHHHHHH
Q 015610 240 TYKSMIIPIMQEDKRAGETTRKGFYLYDER-RKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEAC 318 (403)
Q Consensus 240 ~~~~~~l~~~v~~G~~G~k~g~GFy~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~ 318 (403)
+.+++++++|+++|++|+|||+|||+|++. +.+..++++..++.. .+ ....++++++||++.+++|||+
T Consensus 555 ~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~g~v~~Rll~~~~~Ea~ 624 (699)
T TIGR02440 555 FKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDESVYGLLGI-------KP---GVDKEASAVAERCVMLMLNEAV 624 (699)
T ss_pred CCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhCc-------CC---CCCCCHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999854 345677777655421 10 1136789999999999999999
Q ss_pred HHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHCCCCcc
Q 015610 319 RVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGATLS 393 (403)
Q Consensus 319 ~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~~~g~~~~p~~~l~~~~~~g~~f~ 393 (403)
++++|||+.+|+|||.+|++|+|||+|+||||+++|.+|++.+++.++.+++.+|++|.|+++|++|+++|+.||
T Consensus 625 ~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~~~L~~~~~~~~~f~ 699 (699)
T TIGR02440 625 RCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPCQRLVAMAAEKQSFY 699 (699)
T ss_pred HHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCCCcC
Confidence 999999966999999999999999999999999999999999999999999999999999999999999999997
No 4
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1e-85 Score=698.17 Aligned_cols=384 Identities=35% Similarity=0.603 Sum_probs=362.7
Q ss_pred ChHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCC
Q 015610 1 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la-~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e 79 (403)
||++||..++ .+|++|+++|++++.++++++++++.+++++++|.+++++.++.+++|+++++++++++||+|||||||
T Consensus 320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E 399 (708)
T PRK11154 320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFE 399 (708)
T ss_pred hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecccc
Confidence 8999999999 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 159 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~~ 159 (403)
++++|+++|++|+++++|+|||+||||++++++|++.+.+|+||+|+|||||++.+|+||||+|+.|++++++.+..|++
T Consensus 400 ~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~ 479 (708)
T PRK11154 400 DLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAK 479 (708)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCchHHHHHHhhchHHHHHHHHHHHHhCCCC
Q 015610 160 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 239 (403)
Q Consensus 160 ~lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~~~~~iD~a~~~~g~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~ 239 (403)
.+||.|++++|+||||+||++.++++||++++++|+++++||.++.++|||+|||+++|.+|+|++.++.+.+++.++++
T Consensus 480 ~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~~~ 559 (708)
T PRK11154 480 KQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAALGER 559 (708)
T ss_pred HcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999876
Q ss_pred CccccHHHHHHHcCCCccccCccccccCCCC---CCCCChhHHHHHHHHhhccCccCCccccccchHHHHHHHHHHHHHH
Q 015610 240 TYKSMIIPIMQEDKRAGETTRKGFYLYDERR---KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNE 316 (403)
Q Consensus 240 ~~~~~~l~~~v~~G~~G~k~g~GFy~y~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~e 316 (403)
+.+++++++|+++|++|+|+|+|||+|++.. ++..++++...+.. .+ ...+++++|+||++.+++||
T Consensus 560 ~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~g~i~~Rll~~~~nE 629 (708)
T PRK11154 560 FSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLGI-------TP---QSRLSANEIAERCVMLMLNE 629 (708)
T ss_pred CCCCHHHHHHHHCCCCcccCCceEEECCCCcccccccCCHHHHHHhcc-------CC---CCCCCHHHHHHHHHHHHHHH
Confidence 6688899999999999999999999998532 24567776655421 10 12478999999999999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHCCCCccC
Q 015610 317 ACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGATLSA 394 (403)
Q Consensus 317 a~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~~~g~~~~p~~~l~~~~~~g~~f~~ 394 (403)
|++|++|||+.+++|||.+|++|+|||+|+||||+++|.+|++.+++.++.+++.+|++|.|+++|++++++|++||.
T Consensus 630 a~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~~~l~~~~~~~~~f~~ 707 (708)
T PRK11154 630 AVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPCERLVEMAERGESFYP 707 (708)
T ss_pred HHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCCHHHHHHHHcCCCCCC
Confidence 999999999669999999999999999999999999999999999999999999999999999999999999999973
No 5
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2.6e-85 Score=694.98 Aligned_cols=384 Identities=36% Similarity=0.636 Sum_probs=360.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||++||..++++||+|+++|++++.++++++++++.+++++++|.+++++.++.++||+++++++++++||+|||||||+
T Consensus 324 mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E~ 403 (715)
T PRK11730 324 MGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVVEN 403 (715)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEecccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 160 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~~~ 160 (403)
+++|+++|++|++.++++|||+|||||+++++|++.+.+|+||+|+|||||++.+++||||+|+.|++++++.+..|++.
T Consensus 404 l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~ 483 (715)
T PRK11730 404 PKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYASK 483 (715)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCchHHHHHHhhchHHHHHHHHHHHHhCCCC
Q 015610 161 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAI-TKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 239 (403)
Q Consensus 161 lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~~~~~iD~a~-~~~g~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~ 239 (403)
+||.||+++|+||||+||++.++++||++++++|.++++||+++ .++|+|+|||+++|.+|+|++.++.+.++..++++
T Consensus 484 lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~~~~~~~~~ 563 (715)
T PRK11730 484 MGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAEGFPDR 563 (715)
T ss_pred hCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999 78999999999999999999999999999988876
Q ss_pred Cc--cccHHHHHHHcCCCccccCccccccCCCC----CCCCChhHHHHHHHHhhccCccCCccccccchHHHHHHHHHHH
Q 015610 240 TY--KSMIIPIMQEDKRAGETTRKGFYLYDERR----KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPV 313 (403)
Q Consensus 240 ~~--~~~~l~~~v~~G~~G~k~g~GFy~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~ 313 (403)
.. +++++++|+++|++|+|+|+|||+|++.. +...++++..++..... ....++.++|+||++.++
T Consensus 564 ~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~nRll~~~ 635 (715)
T PRK11730 564 MKKDYRDAIDVLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQ--------PKREFSDEEIIARMMIPM 635 (715)
T ss_pred cccchhHHHHHHHHCCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhcc--------ccCCCCHHHHHHHHHHHH
Confidence 43 56889999999999999999999997431 34567777776654321 012367889999999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHCCCCcc
Q 015610 314 VNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGATLS 393 (403)
Q Consensus 314 ~~ea~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~~~g~~~~p~~~l~~~~~~g~~f~ 393 (403)
+|||++|++|||+.+|+|||.+|++|+|||+|+||||+++|.+|++.+++.++.+. .++++|.|+++|++|+++|++||
T Consensus 636 ~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~L~~~v~~~~~f~ 714 (715)
T PRK11730 636 INEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEGLREMAANGESYY 714 (715)
T ss_pred HHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHHHHHHHHcCCCCC
Confidence 99999999999855999999999999999999999999999999999999999875 58889999999999999999997
No 6
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=100.00 E-value=4.1e-82 Score=644.58 Aligned_cols=389 Identities=32% Similarity=0.516 Sum_probs=350.5
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||++||.+|+++||+|++||++++++++++++|++.+++++++|.+++++.++.++|++.+++++++++||+|||||||+
T Consensus 16 MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIEav~E~ 95 (503)
T TIGR02279 16 MGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALADAGLVIEAIVEN 95 (503)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhCCCCEEEEcCcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 160 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~~~ 160 (403)
+++|+++|+++++.+++++||+|||||+++++|++.+.+|+|++|+|||+|++.++|+|||+|+.|++++++++.++++.
T Consensus 96 ~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~e~~~~~~~l~~~ 175 (503)
T TIGR02279 96 LEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALA 175 (503)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCchHHHHHHhhchHHHHHHHHHHHHhC-C
Q 015610 161 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAI-TKFGMPMGPFRLADLVGFGVAIATGMQFIENF-P 237 (403)
Q Consensus 161 lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~-~~~g~~~GPf~~~D~~Gld~~~~~~~~l~~~~-~ 237 (403)
+||.|++++|+|||++||++.++++||++++++|. ++++||+++ .++|||||||+++|++|+|+++++.+.+++.+ +
T Consensus 176 lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~~v~~~~~~~~~~ 255 (503)
T TIGR02279 176 WGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNFAVTCSVFNAFWQ 255 (503)
T ss_pred cCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999985 999999999 68999999999999999999999999998874 5
Q ss_pred CCCc-cccHHHHHHHcCCCccccCccccccCCCCCCC-C-----------------------------------------
Q 015610 238 ERTY-KSMIIPIMQEDKRAGETTRKGFYLYDERRKAS-P----------------------------------------- 274 (403)
Q Consensus 238 ~~~~-~~~~l~~~v~~G~~G~k~g~GFy~y~~~~~~~-~----------------------------------------- 274 (403)
+.+| |++++++|+++|++|+|||+|||+|+++.... +
T Consensus 256 ~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 335 (503)
T TIGR02279 256 DRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDSFSPRVTVVGDIGAAAPLLARLEAAGIKVEKKSGR 335 (503)
T ss_pred CCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCCCCCccccccccccceeecccccchhhHHHHHHhccccccccccc
Confidence 6555 77889999999999999999999997543211 1
Q ss_pred ----------------------------ChhHHHHHHHHhhccCc--------------------cCCcc-ccccc--hH
Q 015610 275 ----------------------------DPEVKKFIEKARSMSGV--------------------AIDPK-FAKLS--EK 303 (403)
Q Consensus 275 ----------------------------~~~~~~~~~~~~~~~~~--------------------~~~~~-~~~~~--~~ 303 (403)
|+++.+++...+....+ ...|| ++.+. ++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pG 415 (503)
T TIGR02279 336 GVTQIGDALLALTDGRTAQARAIELARPNLVLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPG 415 (503)
T ss_pred cccccchhhhhhccccchhhhhhhcCCCCchHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCccc
Confidence 12222222221110000 01122 22333 49
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCC-CCCccHHH
Q 015610 304 DIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCAFL 382 (403)
Q Consensus 304 ~i~~r~~~~~~~ea~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~~~g~-~~~p~~~l 382 (403)
+|+||++++++|||++++++|++ +++|||.+|++|+|||+ |||+++|.+|+|.+++.++++.+.+|+ +|.|+++|
T Consensus 416 fi~nRil~~~~nEA~~ll~eGva-s~~dID~a~~~g~G~P~---GP~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L 491 (503)
T TIGR02279 416 LLILRTVAMLANEAADAVLQGVA-SAQDIDTAMRLGVNYPY---GPLAWAAQLGWQRILRVLENLQHHYGEERYRPSSLL 491 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCc---CHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHH
Confidence 99999999999999999999999 99999999999999999 999999999999999999999999984 99999999
Q ss_pred HHHHHCCCCcc
Q 015610 383 AERAGKGATLS 393 (403)
Q Consensus 383 ~~~~~~g~~f~ 393 (403)
+++++.|.+|.
T Consensus 492 ~~~v~~g~~~~ 502 (503)
T TIGR02279 492 RRRALLGSGYE 502 (503)
T ss_pred HHHHHcCCCcC
Confidence 99999999875
No 7
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1e-79 Score=628.65 Aligned_cols=390 Identities=33% Similarity=0.543 Sum_probs=349.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||++||.+++++||+|++||+++++++++.++|++.+++++++|.+++++.++.++|++++++++++++||+|||||||+
T Consensus 18 MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E~ 97 (507)
T PRK08268 18 MGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADLADCDLVVEAIVER 97 (507)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhCCCCEEEEcCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 160 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~~~ 160 (403)
+++|+.+|+++++.+++++|++|||||++++++++.+.+|+||+|+|||+|++.++|+|||+|+.|++++++++.++++.
T Consensus 98 ~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~ 177 (507)
T PRK08268 98 LDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARA 177 (507)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCchHHHHHHhhchHHHHHHHHHHHHhC-C
Q 015610 161 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAI-TKFGMPMGPFRLADLVGFGVAIATGMQFIENF-P 237 (403)
Q Consensus 161 lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~-~~~g~~~GPf~~~D~~Gld~~~~~~~~l~~~~-~ 237 (403)
+||.|++++|+|||++||++.++++||++++++|. ++++||+++ .++|||||||+++|++|+|+.+++.+.+++.+ +
T Consensus 178 lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv~~~v~~~~~~~~~~ 257 (507)
T PRK08268 178 WGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDVNHAVMESVYRQFYQ 257 (507)
T ss_pred cCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999975 999999999 78999999999999999999999999988774 4
Q ss_pred CCCc-cccHHHHHHHcCCCccccCccccccCCCCC-CCCChh--------------------HHHHHHHHh---------
Q 015610 238 ERTY-KSMIIPIMQEDKRAGETTRKGFYLYDERRK-ASPDPE--------------------VKKFIEKAR--------- 286 (403)
Q Consensus 238 ~~~~-~~~~l~~~v~~G~~G~k~g~GFy~y~~~~~-~~~~~~--------------------~~~~~~~~~--------- 286 (403)
+.+| +++++++|++.|++|+|+|+|||+|+++++ ..++++ +..++....
T Consensus 258 ~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (507)
T PRK08268 258 EPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPPVWVSADVEGDLAALARLLERLGATIETGEGP 337 (507)
T ss_pred CCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCCCCCCccccccCccccccccccchhHHHHHHHHhhcccccccccc
Confidence 5445 778899999999999999999999975432 222222 111111000
Q ss_pred ---------------------hc---cCc------c-----------------------------CCcc-cccc--chHH
Q 015610 287 ---------------------SM---SGV------A-----------------------------IDPK-FAKL--SEKD 304 (403)
Q Consensus 287 ---------------------~~---~~~------~-----------------------------~~~~-~~~~--~~~~ 304 (403)
.. .++ . ..+| ++.+ ++++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~Gf 417 (507)
T PRK08268 338 SADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPGF 417 (507)
T ss_pred ccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCccH
Confidence 00 000 0 0011 0001 5799
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCC-CCCccHHHH
Q 015610 305 IVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCAFLA 383 (403)
Q Consensus 305 i~~r~~~~~~~ea~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~~~g~-~~~p~~~l~ 383 (403)
|+||++.+++|||++|++|||+ ||+|||.+|++|+|||+ |||+++|.+|++.++++++.+++.+|+ +|.|+++|+
T Consensus 418 i~nRll~~~~nEa~~ll~eGva-s~~dID~a~~~g~G~p~---GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~ 493 (507)
T PRK08268 418 VAQRTVAMIVNEAADIAQQGIA-SPADIDLAMRLGLNYPL---GPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLR 493 (507)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCc---CHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHH
Confidence 9999999999999999999998 99999999999999999 999999999999999999999999995 999999999
Q ss_pred HHHHCCCCccC
Q 015610 384 ERAGKGATLSA 394 (403)
Q Consensus 384 ~~~~~g~~f~~ 394 (403)
++++.|+.||.
T Consensus 494 ~~v~~G~~~~~ 504 (507)
T PRK08268 494 RRAALGLSLRS 504 (507)
T ss_pred HHHHcCCCcCC
Confidence 99999999976
No 8
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=100.00 E-value=5.4e-71 Score=522.76 Aligned_cols=268 Identities=38% Similarity=0.663 Sum_probs=260.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||++||..+|.+||+|+++|++++.++++++.+++.+++++++|.+++++.+..+++|+.+++++++++||+|||+|+|+
T Consensus 14 MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~~~DlVIEAv~E~ 93 (307)
T COG1250 14 MGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALKDADLVIEAVVED 93 (307)
T ss_pred hhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhccCCEEEEecccc
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 160 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~~~ 160 (403)
+++|+++|++++++++|+|||+|||||+|+++|++.+++|+||+|+||||||+.|+|||||+|..|++++++++.+|.+.
T Consensus 94 levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~ 173 (307)
T COG1250 94 LELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKK 173 (307)
T ss_pred HHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCchHHHHHHhhchHHHHHHHHHHHHhCCC
Q 015610 161 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAI-TKFGMPMGPFRLADLVGFGVAIATGMQFIENFPE 238 (403)
Q Consensus 161 lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~-~~~g~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~ 238 (403)
+||.|++++|+|||++||++.++++||++++++|+ ++++||.++ .++|||||||+++|++|+|++.++++.+++.+++
T Consensus 174 igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~~i~~~~~~~~~~ 253 (307)
T COG1250 174 IGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVMLHIMKVLNETLGD 253 (307)
T ss_pred cCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHHHHHHHHHHhcCC
Confidence 99999888999999999999999999999999996 999999999 7899999999999999999999999999988884
Q ss_pred C-Cc-cccHHHHHHHcCCCccccCccccccCC
Q 015610 239 R-TY-KSMIIPIMQEDKRAGETTRKGFYLYDE 268 (403)
Q Consensus 239 ~-~~-~~~~l~~~v~~G~~G~k~g~GFy~y~~ 268 (403)
+ .+ +++++++|++.|++|+|+|+|||+|+.
T Consensus 254 ~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 254 DPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred CccccccHHHHHHHhcccccccCCCcceeccc
Confidence 3 44 788999999999999999999999975
No 9
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2.4e-69 Score=508.68 Aligned_cols=378 Identities=42% Similarity=0.670 Sum_probs=348.5
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||++||..+..+|++|+++|.+...++++..++...+.+.+.+++++..+++....+++.+.|+..+++||+|||++.||
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 160 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~~~ 160 (403)
+++|+++|.+|+++++++||++||||+++++++++.+.+|++++|+|||+|++.|+|+||+.+..||..++..+......
T Consensus 81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~ 160 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP 160 (380)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEecccchhhhhhhHHHHHHHHHHHHHc-CCCHHHHHHHHHhcCCCchHHHHHHhhchHHHHHHHHHHHHhCCCC
Q 015610 161 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVER-GTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 239 (403)
Q Consensus 161 lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~-G~~~~~iD~a~~~~g~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~ 239 (403)
.||.|+++++++||.+||++.++++++.++..+ |++|.++|.++..||||+||+.+.|..|+|+..++...+...++++
T Consensus 161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence 999999999999999999999999999998887 9999999999999999999999999999999887766655444433
Q ss_pred CccccHHHHHHHcCCCccccCccccccCCCCCCCCC-hhHHHHHHHHhhccCccCCccccccchHHHHHHHHHHHHHHHH
Q 015610 240 TYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPD-PEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEAC 318 (403)
Q Consensus 240 ~~~~~~l~~~v~~G~~G~k~g~GFy~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~ 318 (403)
+.++|++.|+.|+|||+|||.|+.+..+..+ .+..+.+.... ...++...+++++++|++.+.+||++
T Consensus 241 -----~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~------~~~~~r~~~~ed~v~~~~~p~VnEal 309 (380)
T KOG1683|consen 241 -----IEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLS------LTPNPRVADDEDFVEFLLSPFVNEAL 309 (380)
T ss_pred -----hHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHhc------cCCCcccCCHHHHHHHHhhHHHHHHH
Confidence 6889999999999999999999876433333 44444444432 11122346889999999999999999
Q ss_pred HHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHCCCCccC
Q 015610 319 RVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGATLSA 394 (403)
Q Consensus 319 ~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~~~g~~~~p~~~l~~~~~~g~~f~~ 394 (403)
+|++|||..+++++|.+.++|+|||+++||||+|+|.+|+++++++|+.|+. |+||++|.+++++|+-||.
T Consensus 310 ~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~l~~~a~~~~~~~~ 380 (380)
T KOG1683|consen 310 RCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQLLKDHAKSGKKFYN 380 (380)
T ss_pred HHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHHHHHHHhhhccccC
Confidence 9999999999999999999999999999999999999999999999999985 9999999999999999984
No 10
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1e-68 Score=471.34 Aligned_cols=266 Identities=35% Similarity=0.574 Sum_probs=255.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHH-----HHhhcCccccccc-cccCCCCeEE
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKF-----EKTISLLTGVLDY-ESFKDVDMVI 74 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~-----~~~~~~i~~~~~~-~~~~~aDlVi 74 (403)
||++||+..|.+|++|.++|.+++++.++.+.|.+.+.+..+++..+.... +..++||+.+++. .++.++|+||
T Consensus 22 MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~~~v~dadlii 101 (298)
T KOG2304|consen 22 MGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVSDAVSDADLII 101 (298)
T ss_pred cchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHHHhhhhhHHHH
Confidence 999999999999999999999999999999999999999999988775554 7889999988888 6689999999
Q ss_pred EecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHH
Q 015610 75 EAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDL 154 (403)
Q Consensus 75 eav~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~ 154 (403)
||+.|++++|+.+|++|+..|+++||++|||||+++++++..+++|.||.|+||||||..|+|||||+++.||++++...
T Consensus 102 EAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVir~~~TS~eTf~~l 181 (298)
T KOG2304|consen 102 EAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVIRTDDTSDETFNAL 181 (298)
T ss_pred HHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhhcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCchHHHHHHhhchHHHHHHHHHH
Q 015610 155 LDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAI-TKFGMPMGPFRLADLVGFGVAIATGMQF 232 (403)
Q Consensus 155 ~~l~~~lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~-~~~g~~~GPf~~~D~~Gld~~~~~~~~l 232 (403)
..|.+.+||++|-|+|.||||+||++.++++||+++++.|. +.+|||.+| .|.|+||||||++|.+|||++..+++-|
T Consensus 182 ~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~DyvGLDt~kfvmdgw 261 (298)
T KOG2304|consen 182 VDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADYVGLDTCKFVMDGW 261 (298)
T ss_pred HHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997 999999999 8999999999999999999999999999
Q ss_pred HHhCCC-CCc-cccHHHHHHHcCCCccccCcccccc
Q 015610 233 IENFPE-RTY-KSMIIPIMQEDKRAGETTRKGFYLY 266 (403)
Q Consensus 233 ~~~~~~-~~~-~~~~l~~~v~~G~~G~k~g~GFy~y 266 (403)
++.+++ ..| |+|++.++|++|++|||+|+|||+|
T Consensus 262 he~~pe~~~f~psPll~klVaegklGrKtg~GfY~Y 297 (298)
T KOG2304|consen 262 HEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKY 297 (298)
T ss_pred HhcCCcccccCCChHHHHHHhccccccccCccceec
Confidence 999865 445 9999999999999999999999998
No 11
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.7e-64 Score=483.34 Aligned_cols=266 Identities=34% Similarity=0.551 Sum_probs=259.2
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||++||.+|+++||+|++||++++.+++++++|++.+++++++|.+++++.++.++|++++++++++++||+|||||||+
T Consensus 16 mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~d~ViEav~E~ 95 (286)
T PRK07819 16 MGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDFADRQLVIEAVVED 95 (286)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHhCCCCEEEEecccC
Confidence 89999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred hHHHHHHHHHHHhhC-CCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 015610 81 VSLKQQIFADLEKYC-PPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 159 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~-~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~~ 159 (403)
+++|+++|+++++.+ ++++||+||||++++++++..+.+|+|++|+|||+|++.++++||+++..|++++++++.+|++
T Consensus 96 ~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T~~~~~~~~~~~~~ 175 (286)
T PRK07819 96 EAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFAS 175 (286)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999988
Q ss_pred -HcCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCchHHHHHHhhchHHHHHHHHHHHHhC
Q 015610 160 -KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAI-TKFGMPMGPFRLADLVGFGVAIATGMQFIENF 236 (403)
Q Consensus 160 -~lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~-~~~g~~~GPf~~~D~~Gld~~~~~~~~l~~~~ 236 (403)
.+||.|++++|.|||++||++.++++||++++++|+ +++|||.++ .++|||+|||+++|.+|+|++.++.+.+++.+
T Consensus 176 ~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~ 255 (286)
T PRK07819 176 DVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGLDTVKAIADSMYEEF 255 (286)
T ss_pred HhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhccHHHHHHHHHHHHHc
Confidence 599999999999999999999999999999999997 999999999 89999999999999999999999999999999
Q ss_pred CCCCc-cccHHHHHHHcCCCccccCcccccc
Q 015610 237 PERTY-KSMIIPIMQEDKRAGETTRKGFYLY 266 (403)
Q Consensus 237 ~~~~~-~~~~l~~~v~~G~~G~k~g~GFy~y 266 (403)
++++| |++++++|+++|++|+|+|+|||+|
T Consensus 256 ~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 256 KEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred CCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 88665 8899999999999999999999998
No 12
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.1e-61 Score=468.53 Aligned_cols=268 Identities=26% Similarity=0.402 Sum_probs=256.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHH-------HHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcccccc--c-cccCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEK-------FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--Y-ESFKDV 70 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~-------~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~~~~a 70 (403)
||++||..++.+|++|+++|++++ .+++++++|++.+++++++|.+++++.++.++||+++++ + +++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 999999999999999999999995 477899999999999999999999999999999998765 3 678999
Q ss_pred CeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHH
Q 015610 71 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQV 150 (403)
Q Consensus 71 DlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~ 150 (403)
|+|||||||++++|+++|++|++.++|++||+||||++++++|++.+.+|+|++|+||||||+.+|+|||++|+.|++++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~ 160 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV 160 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---chHHHHHHhhchHHH
Q 015610 151 IVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAI-TKFGMP---MGPFRLADLVGFGVA 225 (403)
Q Consensus 151 ~~~~~~l~~~lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~-~~~g~~---~GPf~~~D~~Gld~~ 225 (403)
++++.++++.+||.|++++|.|||++||++.++++||+.++++|+ ++++||.++ .++|+| +|||+++|.+|+|++
T Consensus 161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~ 240 (314)
T PRK08269 161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL 240 (314)
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999975 999999999 799999 699999999999999
Q ss_pred HHHHHHHHHhCCCCCc-cccHHHHHHHcCCCccccCccccccCC
Q 015610 226 IATGMQFIENFPERTY-KSMIIPIMQEDKRAGETTRKGFYLYDE 268 (403)
Q Consensus 226 ~~~~~~l~~~~~~~~~-~~~~l~~~v~~G~~G~k~g~GFy~y~~ 268 (403)
.++.+.+++.+++..| |++++++|+++|++|+|+|+|||+|++
T Consensus 241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence 9999999998888444 889999999999999999999999965
No 13
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.3e-59 Score=447.46 Aligned_cols=267 Identities=27% Similarity=0.434 Sum_probs=255.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHhhcCccccccc-cccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK-FEKTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
||++||..|+.+|++|++||++++.++++.+++++.++++.+.+.++.++ .+..+++++.++++ +++++||+||||+|
T Consensus 14 mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~~aDlVieavp 93 (287)
T PRK08293 14 LGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVKDADLVIEAVP 93 (287)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhcCCCEEEEecc
Confidence 89999999999999999999999999999999999999999999998877 77888999988888 46899999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 015610 79 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIG 158 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~ 158 (403)
|+.++|+.+|+++++.+++++||+||||+++++++++.+.+|+||+|+|||+|++.++++|||+++.|++++++++.+|+
T Consensus 94 e~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t~~~~~~~~~~~~ 173 (287)
T PRK08293 94 EDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFA 173 (287)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcEEe-cccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCchHHHHHHhhchHHHHHHHHHHHHh
Q 015610 159 KKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAI-TKFGMPMGPFRLADLVGFGVAIATGMQFIEN 235 (403)
Q Consensus 159 ~~lGk~~v~~-~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~-~~~g~~~GPf~~~D~~Gld~~~~~~~~l~~~ 235 (403)
+.+||.|+++ +|.|||++||++.++++||++++++|+ ++++||+++ .++|+|+|||+++|.+|+|++.++++.+++.
T Consensus 174 ~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld~~~~~~~~~~~~ 253 (287)
T PRK08293 174 KAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLDTAYNITSNWAEA 253 (287)
T ss_pred HHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchHHHHHHHHHHHHH
Confidence 9999999998 599999999999999999999999997 999999999 8999999999999999999999999999999
Q ss_pred CCCCCc--cccHHHHHHHcCCCccccCccccccC
Q 015610 236 FPERTY--KSMIIPIMQEDKRAGETTRKGFYLYD 267 (403)
Q Consensus 236 ~~~~~~--~~~~l~~~v~~G~~G~k~g~GFy~y~ 267 (403)
++++++ +++++++|+++|++|+|+|+|||+|+
T Consensus 254 ~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 254 TDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred hCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence 988764 78999999999999999999999994
No 14
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.9e-58 Score=443.22 Aligned_cols=270 Identities=29% Similarity=0.500 Sum_probs=259.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||.+||.+|+++|++|++||++++.++++.+++...++..++.|.+++++.++.+++++.++++ +++++||+||||+||
T Consensus 12 mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~aD~Vi~avpe 91 (288)
T PRK09260 12 MGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVADADLVIEAVPE 91 (288)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcCCCEEEEeccC
Confidence 8999999999999999999999999999999999989999999999999999999999888888 678999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 159 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~~ 159 (403)
+.++|+.+|+++++.+++++|+++||||++++++++.+.+|.|++|+||++|++.++++|+++|+.|+++++++++++++
T Consensus 92 ~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~~~~~~~~~~l~ 171 (288)
T PRK09260 92 KLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAE 171 (288)
T ss_pred CHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCchHHHHHHhhchHHHHHHHHHHHHhCC
Q 015610 160 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAI-TKFGMPMGPFRLADLVGFGVAIATGMQFIENFP 237 (403)
Q Consensus 160 ~lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~-~~~g~~~GPf~~~D~~Gld~~~~~~~~l~~~~~ 237 (403)
.+||.|++++|.|||++||++.++++||++++++|+ ++++||.++ .++|||+|||+++|.+|+|++.++.+.+++.++
T Consensus 172 ~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~~~~~~l~~~~~ 251 (288)
T PRK09260 172 QMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRLNNLKYLHETLG 251 (288)
T ss_pred HcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999997 999999999 799999999999999999999999999999888
Q ss_pred CCCccccHHHHHHHcCCCccccCccccccCCCC
Q 015610 238 ERTYKSMIIPIMQEDKRAGETTRKGFYLYDERR 270 (403)
Q Consensus 238 ~~~~~~~~l~~~v~~G~~G~k~g~GFy~y~~~~ 270 (403)
+++.|++++.+|++.|++|+|+|+|||+|++++
T Consensus 252 ~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 284 (288)
T PRK09260 252 EKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNRE 284 (288)
T ss_pred CCCCCCHHHHHHHHCCCCccccCCEEEECCCCC
Confidence 866688999999999999999999999998643
No 15
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.1e-57 Score=438.59 Aligned_cols=266 Identities=32% Similarity=0.548 Sum_probs=255.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHH---HHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEec
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA---NLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAI 77 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav 77 (403)
||.+||..|+++|++|++||++++.++++.+++++ .++.++++|.+++++.++.+++++.+++++++++||+||||+
T Consensus 14 mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav 93 (291)
T PRK06035 14 MGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYESLSDADFIVEAV 93 (291)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHHHhCCCCEEEEcC
Confidence 89999999999999999999999999999888887 477888899999999999999998888878889999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHH
Q 015610 78 IENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDI 157 (403)
Q Consensus 78 ~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l 157 (403)
||+.++|+++|+++++.+++++||+||||+++++++++.+.+|+|++|+|||+|++.++++|+++|+.|++++++++.++
T Consensus 94 ~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~T~~e~~~~~~~~ 173 (291)
T PRK06035 94 PEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVEL 173 (291)
T ss_pred cCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCchHHHHHHhhchHHHHHHHHHHHHh
Q 015610 158 GKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAI-TKFGMPMGPFRLADLVGFGVAIATGMQFIEN 235 (403)
Q Consensus 158 ~~~lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~-~~~g~~~GPf~~~D~~Gld~~~~~~~~l~~~ 235 (403)
++.+||.|++++|.|||++||++.++++||++++++|+ +++|||+++ .++|+|+|||+++|.+|+|++.++++.+++.
T Consensus 174 ~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~~~~~~~~~l~~~ 253 (291)
T PRK06035 174 SKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGIDTVYHIAEYLYEE 253 (291)
T ss_pred HHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997 999999999 8999999999999999999999999999999
Q ss_pred CCCCCc-cccHHHHHHHcCCCcccc-----Ccccccc
Q 015610 236 FPERTY-KSMIIPIMQEDKRAGETT-----RKGFYLY 266 (403)
Q Consensus 236 ~~~~~~-~~~~l~~~v~~G~~G~k~-----g~GFy~y 266 (403)
+++++| |++++++|+++|++|+|+ |+|||+|
T Consensus 254 ~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 254 TGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred cCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 988765 888999999999999999 9999998
No 16
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.3e-57 Score=436.28 Aligned_cols=266 Identities=35% Similarity=0.611 Sum_probs=257.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||.+||..++++|++|+++|++++.++++.+++++.++.+++.|.++.++.+..+++++.+++++++++||+||||+||+
T Consensus 14 mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~aDlVi~av~e~ 93 (282)
T PRK05808 14 MGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLKDADLVIEAATEN 93 (282)
T ss_pred HHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhccCCeeeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999998888888899999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 160 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~~~ 160 (403)
.++|+++|++|++.+++++||+||||+++++++++.+.+|+|++|+||++|++.++++|+++|+.|++++++.+.++++.
T Consensus 94 ~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~e~~~~~~~l~~~ 173 (282)
T PRK05808 94 MDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKK 173 (282)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCchHHHHHHhhchHHHHHHHHHHHHhCCC
Q 015610 161 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAI-TKFGMPMGPFRLADLVGFGVAIATGMQFIENFPE 238 (403)
Q Consensus 161 lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~-~~~g~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~ 238 (403)
+|+.|++++|+|||++||++.++++||++++++|+ +++|||.++ .++|||+|||+++|.+|+|.+.++++.+++.+++
T Consensus 174 lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~ 253 (282)
T PRK05808 174 IGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCLAIMEVLYEGFGD 253 (282)
T ss_pred cCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999997 999999999 7999999999999999999999999999999987
Q ss_pred CCc-cccHHHHHHHcCCCccccCcccccc
Q 015610 239 RTY-KSMIIPIMQEDKRAGETTRKGFYLY 266 (403)
Q Consensus 239 ~~~-~~~~l~~~v~~G~~G~k~g~GFy~y 266 (403)
+.| |++++++|+++|++|+|+|+|||+|
T Consensus 254 ~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 254 SKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred CcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence 655 8889999999999999999999998
No 17
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=100.00 E-value=3.7e-57 Score=435.86 Aligned_cols=270 Identities=31% Similarity=0.553 Sum_probs=260.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||.+||..|+++|++|++||++++.++++.+++++.++++++.|.+++++.++.+++++++++++++++||+|||||+|+
T Consensus 15 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~aD~Vieav~e~ 94 (295)
T PLN02545 15 MGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDADFIIEAIVES 94 (295)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCCCEEEEcCccC
Confidence 89999999999999999999999999999999999999999999999999999999998888888899999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 160 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~~~ 160 (403)
.++|+.+|+++++.+++++||+||||+++++++++.+.+|.|++|+||++|++.++++|+++++.|++++++.+.++++.
T Consensus 95 ~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~e~~~~~~~ll~~ 174 (295)
T PLN02545 95 EDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAER 174 (295)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCchHHHHHHhhchHHHHHHHHHHHHhCCC
Q 015610 161 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAI-TKFGMPMGPFRLADLVGFGVAIATGMQFIENFPE 238 (403)
Q Consensus 161 lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~-~~~g~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~ 238 (403)
+|+.+++++|.|||++||++.++++||++++++|+ ++++||.++ .++|||+|||+++|.+|+|++.++++.+++.+++
T Consensus 175 lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~ 254 (295)
T PLN02545 175 FGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCLSIMKVLHEGLGD 254 (295)
T ss_pred cCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999997 999999999 7999999999999999999999999999999987
Q ss_pred CCc-cccHHHHHHHcCCCccccCccccccCCCC
Q 015610 239 RTY-KSMIIPIMQEDKRAGETTRKGFYLYDERR 270 (403)
Q Consensus 239 ~~~-~~~~l~~~v~~G~~G~k~g~GFy~y~~~~ 270 (403)
++| |++++++|+++|++|+|+|+|||+|++++
T Consensus 255 ~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 287 (295)
T PLN02545 255 SKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK 287 (295)
T ss_pred CcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence 665 88999999999999999999999998754
No 18
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=7.2e-57 Score=433.24 Aligned_cols=269 Identities=32% Similarity=0.526 Sum_probs=258.5
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||.+||.+|+++|++|++||++++.++++.+++.+.++.+++.|.++.++.++.+.+++++++++++++||+||||+||+
T Consensus 15 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD~Vieavpe~ 94 (292)
T PRK07530 15 MGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLADCDLVIEAATED 94 (292)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhcCCCEEEEcCcCC
Confidence 89999999999999999999999999999999999999999999999988888899999888888899999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 160 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~~~ 160 (403)
.++|+.+|+++.+.+++++||+||||+++++++++.+.+|+|++|+|||+|++.++++|+++|..|++++++++.++++.
T Consensus 95 ~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~~~~~~~~~~~~~ 174 (292)
T PRK07530 95 ETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTK 174 (292)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCchHHHHHHhhchHHHHHHHHHHHHhCCC
Q 015610 161 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAI-TKFGMPMGPFRLADLVGFGVAIATGMQFIENFPE 238 (403)
Q Consensus 161 lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~-~~~g~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~ 238 (403)
+||.|++++|.|||++||++.++++||++++++|+ ++++||.++ .++|||+|||+++|.+|+|++.++.+.+++.+++
T Consensus 175 ~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~~~~~~~~~~~~~~ 254 (292)
T PRK07530 175 LGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTCLSIMQVLHDGLAD 254 (292)
T ss_pred cCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999998 999999999 7999999999999999999999999999999987
Q ss_pred CCc-cccHHHHHHHcCCCccccCccccccCCC
Q 015610 239 RTY-KSMIIPIMQEDKRAGETTRKGFYLYDER 269 (403)
Q Consensus 239 ~~~-~~~~l~~~v~~G~~G~k~g~GFy~y~~~ 269 (403)
..| |++++.+|++.|++|+|+|+|||+|+++
T Consensus 255 ~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 255 SKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred CcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence 655 8889999999999999999999999654
No 19
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1e-56 Score=432.50 Aligned_cols=264 Identities=22% Similarity=0.272 Sum_probs=238.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||++||.+|+++|++|++||++++.++++.++|++.++.+.+.| ++. ....++|+.++++ +++++||+|||||||
T Consensus 18 MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~-~~~---~~~~~~i~~~~~l~~av~~aDlViEavpE 93 (321)
T PRK07066 18 IGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQG-LAP---GASPARLRFVATIEACVADADFIQESAPE 93 (321)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CCh---hhHHhhceecCCHHHHhcCCCEEEECCcC
Confidence 89999999999999999999999999999999999999999888 443 3345688888888 668999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 159 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~~ 159 (403)
++++|+++|++|++.+++++||+||||+++++++++.+.+|+||+|+|||||++.+|+||||+|+.|++++++++.+|++
T Consensus 94 ~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~~f~~ 173 (321)
T PRK07066 94 REALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYR 173 (321)
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCcEEe-cccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---chHHHHHHhhchHH-HHHHHHHH
Q 015610 160 KIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAI-TKFGMP---MGPFRLADLVGFGV-AIATGMQF 232 (403)
Q Consensus 160 ~lGk~~v~~-~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~-~~~g~~---~GPf~~~D~~Gld~-~~~~~~~l 232 (403)
.+||.||++ +|.||||+||++.++++||++++++|+ +++|||+++ .++|++ +|||+++|++|+|. +.+.++++
T Consensus 174 ~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~Gld~g~~~~~~~~ 253 (321)
T PRK07066 174 ALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLAGGDAGMRHFMQQF 253 (321)
T ss_pred HcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhcChHHHHHHHHHHh
Confidence 999999999 699999999999999999999999997 999999999 799997 99999999999998 44666776
Q ss_pred HHhCCCCC--c-cccHHHHHHH------cCCCccccCccccccCC
Q 015610 233 IENFPERT--Y-KSMIIPIMQE------DKRAGETTRKGFYLYDE 268 (403)
Q Consensus 233 ~~~~~~~~--~-~~~~l~~~v~------~G~~G~k~g~GFy~y~~ 268 (403)
.+.+.+.+ + ++++..+|++ ++.+|.++..++|.|.+
T Consensus 254 g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd 298 (321)
T PRK07066 254 GPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD 298 (321)
T ss_pred hhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66553221 2 4556666666 67899999999998853
No 20
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.6e-46 Score=364.53 Aligned_cols=264 Identities=31% Similarity=0.516 Sum_probs=238.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||++||..|+++|++|+++|++++.++++.+.+.+.+....+.+. ....+.+++.++++ +++++||+||+|||+
T Consensus 15 mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~aDlVi~av~~ 89 (311)
T PRK06130 15 MGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAVSGADLVIEAVPE 89 (311)
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHhccCCEEEEeccC
Confidence 899999999999999999999999999888776665544333221 11234566666777 458999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 159 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~~ 159 (403)
+.++|+.+|+++.+.+++++||+|+||+++++++++.+.++.|++|+||++|++.++++|+++++.|++++++.+.++++
T Consensus 90 ~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~~~~~~~v~~l~~ 169 (311)
T PRK06130 90 KLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQTVATTMALLR 169 (311)
T ss_pred cHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HcCCCcEEec-ccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---chHHHHHHhhchHHHHHHHHHHH
Q 015610 160 KIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAI-TKFGMP---MGPFRLADLVGFGVAIATGMQFI 233 (403)
Q Consensus 160 ~lGk~~v~~~-d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~-~~~g~~---~GPf~~~D~~Gld~~~~~~~~l~ 233 (403)
.+|+.+++++ +.|||++||++.++++||+.++++|. +++++|.++ .++||| +|||+++|.+|+|++.++.+.++
T Consensus 170 ~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~Gl~~~~~~~~~l~ 249 (311)
T PRK06130 170 SIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHLAVASYLY 249 (311)
T ss_pred HcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhccchHHHHHHHHH
Confidence 9999999995 88999999999999999999999974 999999999 799998 79999999999999999999999
Q ss_pred HhCCCCCccccHHHHHHHcCCCccccCccccccCCC
Q 015610 234 ENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDER 269 (403)
Q Consensus 234 ~~~~~~~~~~~~l~~~v~~G~~G~k~g~GFy~y~~~ 269 (403)
+.+++++.|++++++|+++|++|+|+|+|||+|+++
T Consensus 250 ~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~ 285 (311)
T PRK06130 250 QDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPE 285 (311)
T ss_pred HhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCC
Confidence 999877668899999999999999999999999754
No 21
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.8e-41 Score=326.21 Aligned_cols=251 Identities=23% Similarity=0.315 Sum_probs=235.5
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||.+||.+|+++|++|++||++++.++.+.++++..++.+.+.|.++.++.+..+++++.++++ +++++||+||||+||
T Consensus 13 mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ad~Vi~avpe 92 (308)
T PRK06129 13 IGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVADADYVQESAPE 92 (308)
T ss_pred HHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCCCCEEEECCcC
Confidence 8999999999999999999999999999999999999999999999988889999999888888 568999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 159 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~~ 159 (403)
+.++|+.+|+++.+.+++++|++||||+++++++++.+.+|.|+++.|||+|++.++++||+++..|++++++++++|++
T Consensus 93 ~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~~~~~~~~~~~~ 172 (308)
T PRK06129 93 NLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALYR 172 (308)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCcEEec-ccchhhhhhhHHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---chHHHHHHhh---chHHHHHHHH
Q 015610 160 KIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAI-TKFGMP---MGPFRLADLV---GFGVAIATGM 230 (403)
Q Consensus 160 ~lGk~~v~~~-d~~G~i~nRi~~~~~~Ea~~l~~~G-~~~~~iD~a~-~~~g~~---~GPf~~~D~~---Gld~~~~~~~ 230 (403)
.+|++|++++ +.+||++||++.++++||+.++++| +|+++||+++ .++|++ +|||++.|.. |++.......
T Consensus 173 ~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~ 252 (308)
T PRK06129 173 AAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYG 252 (308)
T ss_pred HcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHH
Confidence 9999999994 7899999999999999999999997 5999999999 789987 8999999987 8999998888
Q ss_pred HHHHhCCCCCc-cccHHHHHHH
Q 015610 231 QFIENFPERTY-KSMIIPIMQE 251 (403)
Q Consensus 231 ~l~~~~~~~~~-~~~~l~~~v~ 251 (403)
.++..+.+..+ |++++++|++
T Consensus 253 ~l~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK06129 253 PMYRRMAAERGQPVPWDGELVA 274 (308)
T ss_pred HHHHhhccccCCCchhhHHHHH
Confidence 88888877665 7888888876
No 22
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=100.00 E-value=3.4e-42 Score=307.41 Aligned_cols=171 Identities=37% Similarity=0.629 Sum_probs=154.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||++||..++++|++|++||++++.++++.++|++.++.++++|.+++++.+..+++++++++++++.+||+||||+||+
T Consensus 10 mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~adlViEai~E~ 89 (180)
T PF02737_consen 10 MGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDADLVIEAIPED 89 (180)
T ss_dssp HHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTESEEEE-S-SS
T ss_pred HHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhheehhhcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999998877999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 160 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~~~ 160 (403)
+++|+++|++|++.++++|||+||||++++++|++.+.+|+||+|+|||+|++.+|+||||+|+.|++++++++.+|++.
T Consensus 90 l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~ 169 (180)
T PF02737_consen 90 LELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETVDRVRALLRS 169 (180)
T ss_dssp HHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEeccc
Q 015610 161 IKKTPIVVGNC 171 (403)
Q Consensus 161 lGk~~v~~~d~ 171 (403)
+||.|++++|+
T Consensus 170 ~gk~pv~v~D~ 180 (180)
T PF02737_consen 170 LGKTPVVVKDT 180 (180)
T ss_dssp TT-EEEEEES-
T ss_pred CCCEEEEecCC
Confidence 99999999874
No 23
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=100.00 E-value=1.6e-37 Score=318.42 Aligned_cols=232 Identities=22% Similarity=0.287 Sum_probs=198.9
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||++||..|+++|++|++||++++++++..+.++....... .+... .....+++++++++ +++++||+||||+||
T Consensus 15 MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~---~l~~~-~~~~~g~i~~~~~~~ea~~~aD~Vieavpe 90 (495)
T PRK07531 15 IGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYA---MLTDA-PLPPEGRLTFCASLAEAVAGADWIQESVPE 90 (495)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHh---hhccc-hhhhhhceEeeCCHHHHhcCCCEEEEcCcC
Confidence 89999999999999999999999998775443332222111 11111 11123456777788 578999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 159 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~~ 159 (403)
+.++|+++|++|++.+++++||+||||+++++++++.+.+|.|+++.|||||++.++++|+++|+.|++++++++++|++
T Consensus 91 ~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~e~~~~~~~~~~ 170 (495)
T PRK07531 91 RLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKEILR 170 (495)
T ss_pred CHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCcEEe-cccchhhhhhhHHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---chHHHHHHhhchH-HHHHHHHHH
Q 015610 160 KIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAI-TKFGMP---MGPFRLADLVGFG-VAIATGMQF 232 (403)
Q Consensus 160 ~lGk~~v~~-~d~~G~i~nRi~~~~~~Ea~~l~~~G-~~~~~iD~a~-~~~g~~---~GPf~~~D~~Gld-~~~~~~~~l 232 (403)
.+|+.++++ ++.+||++||++.++++||+.++++| +++++||+++ .++|++ +|||+..|+.|++ .+.+.++++
T Consensus 171 ~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~~~g~~~~~~~~ 250 (495)
T PRK07531 171 EIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAGGEAGMRHFLAQF 250 (495)
T ss_pred HcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcCcHHHHHHHHHHh
Confidence 999999999 58999999999999999999999986 5999999999 788774 8999999999855 455777776
Q ss_pred HHhC
Q 015610 233 IENF 236 (403)
Q Consensus 233 ~~~~ 236 (403)
.+.+
T Consensus 251 ~~~~ 254 (495)
T PRK07531 251 GPCL 254 (495)
T ss_pred chhh
Confidence 6554
No 24
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=2.3e-37 Score=273.21 Aligned_cols=220 Identities=26% Similarity=0.420 Sum_probs=202.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHhhcCccccccc-cccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQ-EKFEKTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
.|+++|..||..||+|.+||+.++.++-+.+.+++.+.++-+.|.+.. -.++..+++|+.++++ |.+++|=.|.||+|
T Consensus 14 ~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~Ai~iQEcvp 93 (313)
T KOG2305|consen 14 VGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKGAIHIQECVP 93 (313)
T ss_pred ccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhhhhhHHhhch
Confidence 388999999999999999999999999999999999999887654321 1245567889888888 77899999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 015610 79 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIG 158 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~ 158 (403)
|++++|+.+|++|++.+.|.+|++|+||++.++.+.+.+.+.++++..|+.|||+..||+|+||.|.|+|+++++.+++.
T Consensus 94 E~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPwTsp~tVdrt~~lM 173 (313)
T KOG2305|consen 94 EDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPWTSPDTVDRTRALM 173 (313)
T ss_pred HhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCCCChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcEEe-cccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---chHHHHHHhh
Q 015610 159 KKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAI-TKFGMP---MGPFRLADLV 220 (403)
Q Consensus 159 ~~lGk~~v~~-~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~-~~~g~~---~GPf~~~D~~ 220 (403)
+.+|..||.. ++.-||..||++.+++||.-+++..|+ +..|+|.+| .|+|.+ .||++.+.+.
T Consensus 174 ~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~HLN 241 (313)
T KOG2305|consen 174 RSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAHLN 241 (313)
T ss_pred HHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhhcC
Confidence 9999999988 578999999999999999999999997 999999999 899976 4999988653
No 25
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.97 E-value=2.2e-30 Score=265.44 Aligned_cols=162 Identities=15% Similarity=0.115 Sum_probs=151.8
Q ss_pred hhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCCcEEecccc
Q 015610 93 KYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCT 172 (403)
Q Consensus 93 ~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~~~lGk~~v~~~d~~ 172 (403)
..+.+++++++++++.+.+..+....+|+|++|+|||||++.++++||++|+.|++++++++.+|++.+||.|++++|+|
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~ 415 (507)
T PRK08268 336 GPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSP 415 (507)
T ss_pred ccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCc
Confidence 35678899998888877888887778999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCchHHHHHHhhchHHHHHHHHHHHHhCCCCCc-cccHHHHH
Q 015610 173 GFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAI-TKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY-KSMIIPIM 249 (403)
Q Consensus 173 G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~-~~~g~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~ 249 (403)
|||+||++.+++|||++++++|+ +++|||.++ .++|||+|||+++|.+|+|.+.++++.+++.+++.+| |++++++|
T Consensus 416 Gfi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~ 495 (507)
T PRK08268 416 GFVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRR 495 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHH
Confidence 99999999999999999999998 999999999 7999999999999999999999999999999997555 89999999
Q ss_pred HHcCC
Q 015610 250 QEDKR 254 (403)
Q Consensus 250 v~~G~ 254 (403)
+++|.
T Consensus 496 v~~G~ 500 (507)
T PRK08268 496 AALGL 500 (507)
T ss_pred HHcCC
Confidence 98864
No 26
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.93 E-value=3.8e-26 Score=183.58 Aligned_cols=94 Identities=40% Similarity=0.629 Sum_probs=87.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCchHHHHHHhhchHHHHHHHHHHHHhCCCCCc-cccHHHHH
Q 015610 173 GFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAI-TKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY-KSMIIPIM 249 (403)
Q Consensus 173 G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~-~~~g~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~ 249 (403)
|||+||++.++++||++++++|+ ++++||.++ .++|+|+|||+++|.+|+|++.++.+.+++.++++.+ |++++++|
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m 80 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM 80 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence 89999999999999999999996 999999999 7899999999999999999999999999999999866 78999999
Q ss_pred HHcCCCccccCcccccc
Q 015610 250 QEDKRAGETTRKGFYLY 266 (403)
Q Consensus 250 v~~G~~G~k~g~GFy~y 266 (403)
+++|++|+|+|+|||+|
T Consensus 81 v~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 81 VEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHTT--BGGGTBSSSBE
T ss_pred HHCCCCcCcCCCcceeC
Confidence 99999999999999998
No 27
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.89 E-value=6.2e-23 Score=209.96 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=114.4
Q ss_pred CCCeEEEecCCCCCHHHHHHHHHHHHHcCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCc
Q 015610 134 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAI-TKFGMPM 211 (403)
Q Consensus 134 ~~~lvevv~~~~t~~e~~~~~~~l~~~lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~-~~~g~~~ 211 (403)
..+.+||++++.||+++++++.+|++.+||.|++++|.||||+||++.+++|||++++++|+ +++|||.++ .++|||+
T Consensus 376 ~~~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~ 455 (503)
T TIGR02279 376 TGKRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPY 455 (503)
T ss_pred ccCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCc
Confidence 34689999999999999999999999999999999999999999999999999999999998 899999999 8999999
Q ss_pred hHHHHHHhhchHHHHHHHHHHHHhCCCCCc-cccHHHHHHHcCC
Q 015610 212 GPFRLADLVGFGVAIATGMQFIENFPERTY-KSMIIPIMQEDKR 254 (403)
Q Consensus 212 GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~v~~G~ 254 (403)
|||+|+|.+|+|.+.++++.+++.+++.+| |++++++|+..|.
T Consensus 456 GP~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g~ 499 (503)
T TIGR02279 456 GPLAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLGS 499 (503)
T ss_pred CHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcCC
Confidence 999999999999999999999999996555 8899999998864
No 28
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.88 E-value=2.6e-21 Score=171.54 Aligned_cols=245 Identities=16% Similarity=0.212 Sum_probs=164.7
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCC--CHHHHHH----HHHhcC
Q 015610 135 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDR----AITKFG 208 (403)
Q Consensus 135 ~~lvevv~~~~t~~e~~~~~~~l~~~lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~--~~~~iD~----a~~~~g 208 (403)
++.|-|+.+..-.. -+.++...-|-.+.. -|.......|...++....-+++..+. ++...++ .+..+-
T Consensus 11 ~~~V~ivGaG~MGS----GIAQv~a~sg~~V~l-~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~ 85 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGS----GIAQVAATSGLNVWL-VDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK 85 (298)
T ss_pred ccceEEEcccccch----hHHHHHHhcCCceEE-ecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Confidence 46777776654322 233445556655444 455566777887777777777777654 4544333 332222
Q ss_pred CCchHHHHHHhhc-hHHHH-HHHHH------HHHhC----C-CCCc---cccH-HHHHH-HcCCCccccCccccccCCCC
Q 015610 209 MPMGPFRLADLVG-FGVAI-ATGMQ------FIENF----P-ERTY---KSMI-IPIMQ-EDKRAGETTRKGFYLYDERR 270 (403)
Q Consensus 209 ~~~GPf~~~D~~G-ld~~~-~~~~~------l~~~~----~-~~~~---~~~~-l~~~v-~~G~~G~k~g~GFy~y~~~~ 270 (403)
.. . .+.|.+- .|.++ ++.|+ +++.+ . +... .|.+ +.++. ...+.-|..|-+||++.+-.
T Consensus 86 ~~-t--nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvM 162 (298)
T KOG2304|consen 86 TS-T--NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVM 162 (298)
T ss_pred Hc-C--CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhH
Confidence 21 1 2333333 44444 33333 33332 1 1222 3444 66663 44677788999999987643
Q ss_pred -------CCCCChhHHHHHHHHhhccCccCCcc-cccc--chHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhc
Q 015610 271 -------KASPDPEVKKFIEKARSMSGVAIDPK-FAKL--SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGM 340 (403)
Q Consensus 271 -------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~i~~r~~~~~~~ea~~~l~egv~~~~~diD~~~~~g~ 340 (403)
...+++++-..+.... ...|| ++-+ ++|||+||+|.++++||.++++.|.+ |.+|||.+|.+|.
T Consensus 163 KLvEVir~~~TS~eTf~~l~~f~-----k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdA-skeDIDtaMklGa 236 (298)
T KOG2304|consen 163 KLVEVIRTDDTSDETFNALVDFG-----KAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDA-SKEDIDTAMKLGA 236 (298)
T ss_pred HHhhhhcCCCCCHHHHHHHHHHH-----HHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCC-cHhhHHHHHhccC
Confidence 2345555544333321 12334 2222 67999999999999999999999999 9999999999999
Q ss_pred CCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhC-C-CCCccHHHHHHHH-------CCCCccCCC
Q 015610 341 GFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYG-E-FFKPCAFLAERAG-------KGATLSAPV 396 (403)
Q Consensus 341 gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~~~g-~-~~~p~~~l~~~~~-------~g~~f~~~~ 396 (403)
|||| |||+++|.+|+|++.-+|+-|.+.++ + .|+|+|+|.++++ +|+|||+|.
T Consensus 237 gyPM---GPfEL~DyvGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 237 GYPM---GPFELADYVGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred CCCC---ChHHHHHHhhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence 9999 99999999999999999999999984 3 9999999999996 489999994
No 29
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.86 E-value=2.7e-20 Score=177.00 Aligned_cols=224 Identities=20% Similarity=0.203 Sum_probs=167.2
Q ss_pred CCCcEEecccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHHhcCCCchHHHHHHhhchHHHH-HHHH------HHH
Q 015610 162 KKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAITKFGMPMGPFRLADLVGFGVAI-ATGM------QFI 233 (403)
Q Consensus 162 Gk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~~~~g~~~GPf~~~D~~Gld~~~-~~~~------~l~ 233 (403)
+.-.|++.|..-..++|.+..+....-++++.|. +.++.+.++..+.... .+.++-+.|.++ ++.| .++
T Consensus 25 ~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~---~~~~l~~~DlVIEAv~E~levK~~vf 101 (307)
T COG1250 25 AGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTT---DLAALKDADLVIEAVVEDLELKKQVF 101 (307)
T ss_pred cCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccC---chhHhccCCEEEEeccccHHHHHHHH
Confidence 5577888887777788887777666678888885 9999999885554332 233677777665 2222 233
Q ss_pred Hh----CC-CCCc---cccH-HHHHHH-cCCCccccCccccccCCCC-------CCCCChhHHHHHHHHhhccCccCCcc
Q 015610 234 EN----FP-ERTY---KSMI-IPIMQE-DKRAGETTRKGFYLYDERR-------KASPDPEVKKFIEKARSMSGVAIDPK 296 (403)
Q Consensus 234 ~~----~~-~~~~---~~~~-l~~~v~-~G~~G~k~g~GFy~y~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (403)
.. .+ +... +|.+ +.++.+ ..+..+..|-|||++.+-. ...+++++.+.+.+... ..+|
T Consensus 102 ~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~-----~igK 176 (307)
T COG1250 102 AELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAK-----KIGK 176 (307)
T ss_pred HHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHH-----HcCC
Confidence 32 22 2222 3444 555533 3788889999999987643 35677776665554422 2234
Q ss_pred c-cc--cchHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhC
Q 015610 297 F-AK--LSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYG 373 (403)
Q Consensus 297 ~-~~--~~~~~i~~r~~~~~~~ea~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~~~g 373 (403)
. +. =++|||+||++.++++||++++.+|++ +|++||.+|+.|+|||+ |||+++|.+|+|..+..++.+.+.++
T Consensus 177 ~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva-~~e~ID~~~~~~~G~pm---Gpf~l~D~~GlD~~~~i~~~~~~~~~ 252 (307)
T COG1250 177 TPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVA-TPEEIDAAMRQGLGLPM---GPFELADLIGLDVMLHIMKVLNETLG 252 (307)
T ss_pred CCEeecCCCceehHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCc---cHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 2 21 267999999999999999999999999 99999999999999998 99999999999999999999998887
Q ss_pred --CCCCccHHHHHHHH-------CCCCccCCCc
Q 015610 374 --EFFKPCAFLAERAG-------KGATLSAPVE 397 (403)
Q Consensus 374 --~~~~p~~~l~~~~~-------~g~~f~~~~~ 397 (403)
+.|.|+++++++++ +|+|||+|++
T Consensus 253 ~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 253 DDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred CCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 37888999999996 4999999984
No 30
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.85 E-value=2.7e-21 Score=155.30 Aligned_cols=89 Identities=33% Similarity=0.513 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCC-CCCccHH
Q 015610 303 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCAF 381 (403)
Q Consensus 303 ~~i~~r~~~~~~~ea~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~~~g~-~~~p~~~ 381 (403)
|||+||++.+++|||+++++||++ ||+|||.+++.|+|||+ |||+++|.+|++.+.++++++.+.+++ .+.|+++
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egva-s~~~ID~~~~~~~G~p~---Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 76 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVA-SPEDIDRAMRYGLGFPM---GPFELADLVGLDVVYHILEYLAAALGDRAFRPSPL 76 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHTHSS---THHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCCCC---ccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHH
Confidence 578999999999999999999998 89999999999999998 999999999999999999999999998 5899999
Q ss_pred HHHHHHC-------CCCccCC
Q 015610 382 LAERAGK-------GATLSAP 395 (403)
Q Consensus 382 l~~~~~~-------g~~f~~~ 395 (403)
+++|+++ |+|||+|
T Consensus 77 l~~mv~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 77 LKEMVEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHHHHHTT--BGGGTBSSSBE
T ss_pred HHHHHHCCCCcCcCCCcceeC
Confidence 9999974 8999998
No 31
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.84 E-value=5.7e-20 Score=173.19 Aligned_cols=177 Identities=20% Similarity=0.227 Sum_probs=144.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~-l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
||.+||.+|.++||+|++||+++++ .+.+ .+.|.. ...+. +++++||+||.|||
T Consensus 11 MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~-----------~~~Ga~-------------~a~s~~eaa~~aDvVitmv~ 66 (286)
T COG2084 11 MGSPMAANLLKAGHEVTVYNRTPEKAAELL-----------AAAGAT-------------VAASPAEAAAEADVVITMLP 66 (286)
T ss_pred hhHHHHHHHHHCCCEEEEEeCChhhhhHHH-----------HHcCCc-------------ccCCHHHHHHhCCEEEEecC
Confidence 9999999999999999999999998 4444 355652 33444 88899999999999
Q ss_pred CChHHHHHHHH--HHHhhCCCCcEEEecCCCCCHH---HHHhhcCCCCcEEEEecC-CCCCCC------CeEEEecCCCC
Q 015610 79 ENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHVM------PLLEIVRTNQT 146 (403)
Q Consensus 79 e~~~~K~~~~~--~l~~~~~~~~ilasntStl~~~---~la~~~~~~~r~ig~hf~-~P~~~~------~lvevv~~~~t 146 (403)
.+.+++..+|+ .+.+.+++++++++ .||++++ ++++.+.. .|.||+ +|+++. ..+.|+.| .
T Consensus 67 ~~~~V~~V~~g~~g~~~~~~~G~i~ID-mSTisp~~a~~~a~~~~~----~G~~~lDAPVsGg~~~A~~GtLtimvG--G 139 (286)
T COG2084 67 DDAAVRAVLFGENGLLEGLKPGAIVID-MSTISPETARELAAALAA----KGLEFLDAPVSGGVPGAAAGTLTIMVG--G 139 (286)
T ss_pred CHHHHHHHHhCccchhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHh----cCCcEEecCccCCchhhhhCceEEEeC--C
Confidence 99999999996 58888999999997 4566766 56666543 499999 599853 34445555 3
Q ss_pred CHHHHHHHHHHHHHcCCCcEEeccc-ch---hhhhhhHHHH----HHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 015610 147 SPQVIVDLLDIGKKIKKTPIVVGNC-TG---FAVNRMFFPY----TQAAFLLVER-GTDLYLIDRAI-TKFG 208 (403)
Q Consensus 147 ~~e~~~~~~~l~~~lGk~~v~~~d~-~G---~i~nRi~~~~----~~Ea~~l~~~-G~~~~~iD~a~-~~~g 208 (403)
+++.+++++++++.+|++++++++. .| +++|+++... +.||+.+.++ |++++.+.+++ .+.+
T Consensus 140 ~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~ 211 (286)
T COG2084 140 DAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAA 211 (286)
T ss_pred CHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcccc
Confidence 9999999999999999999999874 44 6899998766 6899999976 99999999999 5544
No 32
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.82 E-value=1e-18 Score=167.45 Aligned_cols=225 Identities=18% Similarity=0.170 Sum_probs=151.8
Q ss_pred HHcCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHHhcCCCchHHHHHHhhchHHHHH----------
Q 015610 159 KKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAITKFGMPMGPFRLADLVGFGVAIA---------- 227 (403)
Q Consensus 159 ~~lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~~~~g~~~GPf~~~D~~Gld~~~~---------- 227 (403)
..-|.. |++.|..-.-..+....+-...-.+++.|. +.++.+..+..+..... +.+..+.|.+..
T Consensus 25 a~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~---~~~~~~~d~ViEav~E~~~~K~ 100 (286)
T PRK07819 25 ARAGVD-VLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTD---LGDFADRQLVIEAVVEDEAVKT 100 (286)
T ss_pred HhCCCE-EEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCC---HHHhCCCCEEEEecccCHHHHH
Confidence 344654 555454333334444444444556677775 78888777644332212 233455555441
Q ss_pred -HHHHHHHhC-C-CCCc---cccH-HHHHH-HcCCCccccCccccccCCCC-------CCCCChhHHHHHHHHhhccCcc
Q 015610 228 -TGMQFIENF-P-ERTY---KSMI-IPIMQ-EDKRAGETTRKGFYLYDERR-------KASPDPEVKKFIEKARSMSGVA 292 (403)
Q Consensus 228 -~~~~l~~~~-~-~~~~---~~~~-l~~~v-~~G~~G~k~g~GFy~y~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 292 (403)
+...+.+.. . +... .+.+ +..+. ...+.++..|-+||++.+.. ...+++++.+.+...-. .
T Consensus 101 ~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T~~~~~~~~~~~~~----~ 176 (286)
T PRK07819 101 EIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFAS----D 176 (286)
T ss_pred HHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHH----H
Confidence 112222222 2 2222 2222 44453 34677888899999965422 24677877665444311 0
Q ss_pred CCcc-cccc--chHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHH
Q 015610 293 IDPK-FAKL--SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWS 369 (403)
Q Consensus 293 ~~~~-~~~~--~~~~i~~r~~~~~~~ea~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~ 369 (403)
..+| ++.+ .+|++.||++.+++|||++|+++|++ |++|||.+++.|+|||+ |||+++|.+|++.++++++.++
T Consensus 177 ~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~-~~~dID~~~~~g~G~p~---Gpf~~~D~~Gld~~~~~~~~l~ 252 (286)
T PRK07819 177 VLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFA-TAEDIDKAMVLGCAHPM---GPLRLSDLVGLDTVKAIADSMY 252 (286)
T ss_pred hCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhccHHHHHHHHHHH
Confidence 1233 2323 46999999999999999999999998 89999999999999998 9999999999999999999999
Q ss_pred HHhCC-CCCccHHHHHHHHC-------CCCccCC
Q 015610 370 SLYGE-FFKPCAFLAERAGK-------GATLSAP 395 (403)
Q Consensus 370 ~~~g~-~~~p~~~l~~~~~~-------g~~f~~~ 395 (403)
+.+++ +|.|+++|++|+++ |+|||+|
T Consensus 253 ~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 253 EEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 98886 89999999999974 8999998
No 33
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.81 E-value=7e-19 Score=169.00 Aligned_cols=145 Identities=20% Similarity=0.208 Sum_probs=114.5
Q ss_pred HHHHHHc-CCCccccCccccccCCCC-------CCCCChhHHHHHHHHhhccCccCCcc-cccc--chHHHHHHHHHHHH
Q 015610 246 IPIMQED-KRAGETTRKGFYLYDERR-------KASPDPEVKKFIEKARSMSGVAIDPK-FAKL--SEKDIVEMIFFPVV 314 (403)
Q Consensus 246 l~~~v~~-G~~G~k~g~GFy~y~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~i~~r~~~~~~ 314 (403)
...+.+. .+..+..|-+||.+.... ...+++++.+.+...- ...+| +..+ .+++++||++.+++
T Consensus 122 ~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~~~~~~~~~~l-----~~lg~~~v~v~d~~Gf~~nRl~~~~~ 196 (288)
T PRK09260 122 PTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVA-----EQMGKETVVVNEFPGFVTSRISALVG 196 (288)
T ss_pred HHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHH-----HHcCCeEEEecCcccHHHHHHHHHHH
Confidence 3444333 455667889999654332 2345777665544431 12233 2333 46999999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHH-------
Q 015610 315 NEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAG------- 387 (403)
Q Consensus 315 ~ea~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~~~g~~~~p~~~l~~~~~------- 387 (403)
|||++|+++|++ +++|||.++++|+|||+ |||+++|.+|++.+++.++.+.+.++++|.|+++|++|++
T Consensus 197 ~ea~~~~~~gv~-~~~~iD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k 272 (288)
T PRK09260 197 NEAFYMLQEGVA-TAEDIDKAIRLGLNFPM---GPLELGDLVGLDTRLNNLKYLHETLGEKYRPAPLLEKYVKAGRLGRK 272 (288)
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHCCCCccc
Confidence 999999999998 99999999999999998 9999999999999999999999999999999999999996
Q ss_pred CCCCccCCCccc
Q 015610 388 KGATLSAPVEEA 399 (403)
Q Consensus 388 ~g~~f~~~~~~~ 399 (403)
+|+|||+|+++.
T Consensus 273 ~g~Gfy~y~~~~ 284 (288)
T PRK09260 273 TGRGVYDYTNRE 284 (288)
T ss_pred cCCEEEECCCCC
Confidence 489999997743
No 34
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.79 E-value=1.9e-18 Score=165.49 Aligned_cols=196 Identities=21% Similarity=0.241 Sum_probs=137.7
Q ss_pred HHHHHcCC-CHHHHHHHHHhcCCCchHHHHHHhhchHHHH-----------HHHHHHHHhCCCC-Cc---cccH-HHHHH
Q 015610 188 FLLVERGT-DLYLIDRAITKFGMPMGPFRLADLVGFGVAI-----------ATGMQFIENFPER-TY---KSMI-IPIMQ 250 (403)
Q Consensus 188 ~~l~~~G~-~~~~iD~a~~~~g~~~GPf~~~D~~Gld~~~-----------~~~~~l~~~~~~~-~~---~~~~-l~~~v 250 (403)
-.+.+.|. +.++.+..+.++-.. ..++ +.-+.|.+. .+.+.+.+..+.. .. .+.+ +..+.
T Consensus 51 ~~~~~~g~~~~~~~~~~~~~l~~~-~~~~--~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la 127 (282)
T PRK05808 51 DRLVKKGKMTEADKEAALARITGT-TDLD--DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELA 127 (282)
T ss_pred HHHHHcCCCCHHHHHHHHhCeEEe-CCHH--HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence 35667784 877777666433222 2222 234444433 2223333333322 22 2222 44554
Q ss_pred H-cCCCccccCccccccCCCC-------CCCCChhHHHHHHHHhhccCccCCcc-ccc--cchHHHHHHHHHHHHHHHHH
Q 015610 251 E-DKRAGETTRKGFYLYDERR-------KASPDPEVKKFIEKARSMSGVAIDPK-FAK--LSEKDIVEMIFFPVVNEACR 319 (403)
Q Consensus 251 ~-~G~~G~k~g~GFy~y~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~i~~r~~~~~~~ea~~ 319 (403)
+ .++..+..|-+|++...-. ...++++..+.+.+.- ...|+ ++. -+++++.||++.+++|||++
T Consensus 128 ~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~e~~~~~~~l~-----~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~ 202 (282)
T PRK05808 128 AATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALA-----KKIGKTPVEVKNAPGFVVNRILIPMINEAIF 202 (282)
T ss_pred HhhCCCcceEEeeccCCcccCccEEEeCCCCCCHHHHHHHHHHH-----HHcCCeeEEecCccChHHHHHHHHHHHHHHH
Confidence 3 2566788899999865421 2456777766655442 22333 222 36799999999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCC-CCCccHHHHHHHHC-------CCC
Q 015610 320 VFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCAFLAERAGK-------GAT 391 (403)
Q Consensus 320 ~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~~~g~-~~~p~~~l~~~~~~-------g~~ 391 (403)
++++|++ +|+|||.++++|+|||+ |||+++|.+|++.+.++++.+++.+++ +|.|+++|++|+++ |+|
T Consensus 203 ~~~~gv~-~~~diD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~G 278 (282)
T PRK05808 203 VLAEGVA-TAEDIDEGMKLGCNHPI---GPLALADLIGLDTCLAIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRG 278 (282)
T ss_pred HHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCc
Confidence 9999998 89999999999999998 999999999999999999999999886 88999999999974 899
Q ss_pred ccCC
Q 015610 392 LSAP 395 (403)
Q Consensus 392 f~~~ 395 (403)
||+|
T Consensus 279 fy~y 282 (282)
T PRK05808 279 FYDY 282 (282)
T ss_pred ccCC
Confidence 9998
No 35
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.78 E-value=4.4e-18 Score=181.15 Aligned_cols=224 Identities=17% Similarity=0.116 Sum_probs=156.9
Q ss_pred HcCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHHhcCCCchHHHHHHhhchHHHHH-HHH------H
Q 015610 160 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAITKFGMPMGPFRLADLVGFGVAIA-TGM------Q 231 (403)
Q Consensus 160 ~lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~~~~g~~~GPf~~~D~~Gld~~~~-~~~------~ 231 (403)
.-|.. |++.|......++....+....-.+++.|. +.++.+.++..+-.. . .+-+..+.|.++. +.| .
T Consensus 326 ~~G~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~--~~~~~~~adlViEav~E~l~~K~~ 401 (699)
T TIGR02440 326 KAGIP-VRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-T--DYRGFKDVDIVIEAVFEDLALKHQ 401 (699)
T ss_pred HcCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-C--ChHHhccCCEEEEeccccHHHHHH
Confidence 34544 444444333455655554445556677775 888888877433221 1 1234556665552 222 2
Q ss_pred HHH----hCCCC-Cc---cccH-HHHHHHc-CCCccccCccccccCCCC-------CCCCChhHHHHHHHHhhccCccCC
Q 015610 232 FIE----NFPER-TY---KSMI-IPIMQED-KRAGETTRKGFYLYDERR-------KASPDPEVKKFIEKARSMSGVAID 294 (403)
Q Consensus 232 l~~----~~~~~-~~---~~~~-l~~~v~~-G~~G~k~g~GFy~y~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 294 (403)
++. ..++. .. +|.+ +.+|.+. .+.+|..|-|||+++... ...+++++.+.+.+.. ...
T Consensus 402 v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~-----~~~ 476 (699)
T TIGR02440 402 MVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALA-----KKQ 476 (699)
T ss_pred HHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHH-----HHc
Confidence 222 23322 22 3444 6667543 788999999999987642 3567888776655442 223
Q ss_pred cc-cccc--chHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 015610 295 PK-FAKL--SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSL 371 (403)
Q Consensus 295 ~~-~~~~--~~~~i~~r~~~~~~~ea~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~~ 371 (403)
+| ++.+ ++|||+||++.+++|||++++++|+ +++|||.++. ++|||+ |||+++|.+|+|.++++++.+.+.
T Consensus 477 gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~--~~~dID~a~~-~~G~p~---GPf~l~D~vGld~~~~i~~~l~~~ 550 (699)
T TIGR02440 477 GKTPIVVADKAGFYVNRILAPYMNEAARLLLEGE--PVEHIDKALV-KFGFPV---GPITLLDEVGIDVGAKISPILEAE 550 (699)
T ss_pred CCeEEEEccccchHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHH-HcCCCc---CHHHHHHHhchHHHHHHHHHHHHh
Confidence 44 3333 5699999999999999999999995 7999999997 999999 999999999999999999999999
Q ss_pred hCCCCCccHHHHHHHHC-------CCCccCCCcc
Q 015610 372 YGEFFKPCAFLAERAGK-------GATLSAPVEE 398 (403)
Q Consensus 372 ~g~~~~p~~~l~~~~~~-------g~~f~~~~~~ 398 (403)
+|++|.|+++|++|+++ |+|||+|++.
T Consensus 551 ~~~~~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~ 584 (699)
T TIGR02440 551 LGERFKAPAVFDKLLSDDRKGRKNGKGFYLYGAA 584 (699)
T ss_pred cCCCCCCcHHHHHHHHCCCCcccCCcEEEeCCCC
Confidence 99999999999999964 8999999753
No 36
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.78 E-value=4.8e-17 Score=156.80 Aligned_cols=228 Identities=17% Similarity=0.142 Sum_probs=147.2
Q ss_pred HHcCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHHhcCCCchHHHHHHhhchHHH-----------H
Q 015610 159 KKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAITKFGMPMGPFRLADLVGFGVA-----------I 226 (403)
Q Consensus 159 ~~lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~~~~g~~~GPf~~~D~~Gld~~-----------~ 226 (403)
...|..++ +-|..-.-.++....+-...-.+++.|. +.++.+..+...-+. .+.+. .-+.|.+ .
T Consensus 24 ~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~--~~~aD~Vieav~e~~~~k~ 99 (295)
T PLN02545 24 AAAGMDVW-LLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCT-TNLEE--LRDADFIIEAIVESEDLKK 99 (295)
T ss_pred HhcCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEee-CCHHH--hCCCCEEEEcCccCHHHHH
Confidence 34465444 4343222334444444444445667775 777777765322221 12221 2233322 2
Q ss_pred HHHHHHHHhCCCC-Cc---cccH-HHHHHHc-CCCccccCccccccCCCC-------CCCCChhHHHHHHHHhhccCccC
Q 015610 227 ATGMQFIENFPER-TY---KSMI-IPIMQED-KRAGETTRKGFYLYDERR-------KASPDPEVKKFIEKARSMSGVAI 293 (403)
Q Consensus 227 ~~~~~l~~~~~~~-~~---~~~~-l~~~v~~-G~~G~k~g~GFy~y~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 293 (403)
.+.+.+.+...+. .. .+.+ +..+.+. ++..+..|-+|++.+... ....+++..+.+...-. .
T Consensus 100 ~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~e~~~~~~~ll~-----~ 174 (295)
T PLN02545 100 KLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAE-----R 174 (295)
T ss_pred HHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHH-----H
Confidence 2233333333332 22 2222 4444433 444666788898876422 13456666555444311 2
Q ss_pred Ccc-ccc--cchHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHH
Q 015610 294 DPK-FAK--LSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSS 370 (403)
Q Consensus 294 ~~~-~~~--~~~~~i~~r~~~~~~~ea~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~ 370 (403)
.++ +.. -+++++.||++.+++|||++++++|++ +++|||.++++|+|||+ |||+++|.+|++.+.++++.+++
T Consensus 175 lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~ 250 (295)
T PLN02545 175 FGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVA-SKEDIDTGMKLGTNHPM---GPLHLADFIGLDTCLSIMKVLHE 250 (295)
T ss_pred cCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCC---CHHHHHHHhchHHHHHHHHHHHH
Confidence 223 122 246999999999999999999999998 89999999999999998 99999999999999999999999
Q ss_pred HhCC-CCCccHHHHHHHHC-------CCCccCCCccc
Q 015610 371 LYGE-FFKPCAFLAERAGK-------GATLSAPVEEA 399 (403)
Q Consensus 371 ~~g~-~~~p~~~l~~~~~~-------g~~f~~~~~~~ 399 (403)
.+|+ +|.|+++|++|+++ |+|||+|+++.
T Consensus 251 ~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 287 (295)
T PLN02545 251 GLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK 287 (295)
T ss_pred HcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence 8886 89999999999975 79999997643
No 37
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.77 E-value=1.7e-17 Score=160.65 Aligned_cols=230 Identities=17% Similarity=0.094 Sum_probs=156.4
Q ss_pred HcCCCcEEecccchh------hhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHHhcCCCch--HHHHHHhhchHHHHH---
Q 015610 160 KIKKTPIVVGNCTGF------AVNRMFFPYTQAAFLLVERGT-DLYLIDRAITKFGMPMG--PFRLADLVGFGVAIA--- 227 (403)
Q Consensus 160 ~lGk~~v~~~d~~G~------i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~~~~g~~~G--Pf~~~D~~Gld~~~~--- 227 (403)
.-|..++...-.+.. .+.+....+-...-.+++.|. +.++.+.++..+-+... +.+. .-+.|.+..
T Consensus 11 ~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a--~~~aD~ViEav~ 88 (314)
T PRK08269 11 FAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADA--LADADLVFEAVP 88 (314)
T ss_pred hCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHH--hccCCEEEECCc
Confidence 346555444223432 344454444444446677786 88888887744332111 2221 244554431
Q ss_pred --------HHHHHHHhCCC-CCc---cccH-HHHHHHc-CCCccccCccccccCCC-------CCCCCChhHHHHHHHHh
Q 015610 228 --------TGMQFIENFPE-RTY---KSMI-IPIMQED-KRAGETTRKGFYLYDER-------RKASPDPEVKKFIEKAR 286 (403)
Q Consensus 228 --------~~~~l~~~~~~-~~~---~~~~-l~~~v~~-G~~G~k~g~GFy~y~~~-------~~~~~~~~~~~~~~~~~ 286 (403)
+...+.+.... ... .|.+ +.++.+. .+..+..|-+||+.+.. +...+++++.+.+...-
T Consensus 89 E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~~~~~~~ll 168 (314)
T PRK08269 89 EVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALL 168 (314)
T ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHH
Confidence 22222222222 222 3443 5666543 67888999999998742 23466777665544431
Q ss_pred hccCccCCcc-cccc--chHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHH
Q 015610 287 SMSGVAIDPK-FAKL--SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYS 363 (403)
Q Consensus 287 ~~~~~~~~~~-~~~~--~~~~i~~r~~~~~~~ea~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~ 363 (403)
...+| ++.+ .+++++||++.++++|++.++++|++ ++++||.++..|+|||++++|||+++|.+|++.+++
T Consensus 169 -----~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~-~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~~~ 242 (314)
T PRK08269 169 -----ERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVA-SAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDILYY 242 (314)
T ss_pred -----HHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHHHH
Confidence 12233 2222 34899999999999999999999998 899999999999999988999999999999999999
Q ss_pred HHHHHHHHhCC-CCCccHHHHHHHH-------CCCCccCCCc
Q 015610 364 RLEEWSSLYGE-FFKPCAFLAERAG-------KGATLSAPVE 397 (403)
Q Consensus 364 ~~~~~~~~~g~-~~~p~~~l~~~~~-------~g~~f~~~~~ 397 (403)
.++.+.+.+++ +|.|+++|++|++ +|+|||+|++
T Consensus 243 ~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 243 ASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence 99999988887 9999999999996 4899999965
No 38
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.77 E-value=9.8e-18 Score=160.97 Aligned_cols=142 Identities=20% Similarity=0.203 Sum_probs=112.2
Q ss_pred HHHHHHc-CCCccccCccccccCCCC-------CCCCChhHHHHHHHHhhccCccCCcc-cccc---chHHHHHHHHHHH
Q 015610 246 IPIMQED-KRAGETTRKGFYLYDERR-------KASPDPEVKKFIEKARSMSGVAIDPK-FAKL---SEKDIVEMIFFPV 313 (403)
Q Consensus 246 l~~~v~~-G~~G~k~g~GFy~y~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~i~~r~~~~~ 313 (403)
+.++.+. .+..+..|-|||+..... ...+++++.+.+.+.- ...|| ++.+ .+++++||++.++
T Consensus 125 ~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t~~~~~~~~~~~~-----~~~Gk~pv~v~~d~pgfi~nRi~~~~ 199 (287)
T PRK08293 125 PSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFA-----KAIGMVPIVLKKEQPGYILNSLLVPF 199 (287)
T ss_pred HHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCCCHHHHHHHHHHH-----HHcCCeEEEecCCCCCHhHHHHHHHH
Confidence 4455443 456677888998875422 2456777666554431 22234 3333 4699999999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCC-C-CccHHHHHHHHC---
Q 015610 314 VNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEF-F-KPCAFLAERAGK--- 388 (403)
Q Consensus 314 ~~ea~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~~~g~~-~-~p~~~l~~~~~~--- 388 (403)
+|||++++++|++ ||+|||++|+.|+|||+ |||+++|.+|+|.+.++++.+.+.+++. + .|+++|++|+++
T Consensus 200 ~~ea~~l~~~g~a-~~~~iD~a~~~~~g~~~---Gp~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~ 275 (287)
T PRK08293 200 LSAALALWAKGVA-DPETIDKTWMIATGAPM---GPFGILDIVGLDTAYNITSNWAEATDDENAKKAAALLKEYIDKGKL 275 (287)
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHhccCCCc---CHHHHHHHhchHHHHHHHHHHHHHhCCcccccchHHHHHHHHCCCC
Confidence 9999999999999 89999999999999998 9999999999999999999999988874 3 488999999974
Q ss_pred ----CCCccCCC
Q 015610 389 ----GATLSAPV 396 (403)
Q Consensus 389 ----g~~f~~~~ 396 (403)
|+|||+|+
T Consensus 276 G~k~g~Gfy~y~ 287 (287)
T PRK08293 276 GVATGEGFYNYP 287 (287)
T ss_pred cccCCCccccCc
Confidence 89999994
No 39
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.77 E-value=1.7e-17 Score=177.15 Aligned_cols=223 Identities=17% Similarity=0.144 Sum_probs=156.8
Q ss_pred HcCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHHhcCCCchHHHHHHhhchHHHHH-HHH------H
Q 015610 160 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAITKFGMPMGPFRLADLVGFGVAIA-TGM------Q 231 (403)
Q Consensus 160 ~lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~~~~g~~~GPf~~~D~~Gld~~~~-~~~------~ 231 (403)
.-|. +|++.|....-.+|....+-...-.+++.|. +.++.+.++..+-... .+.+..+.|.++. +.| .
T Consensus 331 ~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~aDlViEav~E~~~~K~~ 406 (708)
T PRK11154 331 KAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT---DYRGFKHADVVIEAVFEDLALKQQ 406 (708)
T ss_pred HcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC---ChHHhccCCEEeecccccHHHHHH
Confidence 4454 4444453333345554444444556667775 8888887774332211 2334567776652 222 2
Q ss_pred HHHh----CC-CCCc---cccH-HHHHHH-cCCCccccCccccccCCCC-------CCCCChhHHHHHHHHhhccCccCC
Q 015610 232 FIEN----FP-ERTY---KSMI-IPIMQE-DKRAGETTRKGFYLYDERR-------KASPDPEVKKFIEKARSMSGVAID 294 (403)
Q Consensus 232 l~~~----~~-~~~~---~~~~-l~~~v~-~G~~G~k~g~GFy~y~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 294 (403)
++.. .+ +... +|.+ +.++.+ ..+.++..|-|||++.... ...+++++.+.+.+... ..
T Consensus 407 v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~-----~~ 481 (708)
T PRK11154 407 MVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAK-----KQ 481 (708)
T ss_pred HHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHH-----Hc
Confidence 2222 22 2222 3443 566654 3788999999999987532 35678888776655532 22
Q ss_pred cc-cccc--chHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 015610 295 PK-FAKL--SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSL 371 (403)
Q Consensus 295 ~~-~~~~--~~~~i~~r~~~~~~~ea~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~~ 371 (403)
+| ++.+ .+|+|+||++.+++|||++++++|+ +++|||.+++ ++|||+ |||+++|.+|+|.+.++++.+.+.
T Consensus 482 gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv--~~~dID~a~~-~~G~p~---GPf~~~D~~Gld~~~~i~~~l~~~ 555 (708)
T PRK11154 482 GKTPIVVRDGAGFYVNRILAPYINEAARLLLEGE--PIEHIDAALV-KFGFPV---GPITLLDEVGIDVGTKIIPILEAA 555 (708)
T ss_pred CCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-HcCCCC---CHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34 3333 4699999999999999999999997 6999999998 899999 999999999999999999999998
Q ss_pred hCCCCCccHHHHHHHH-------CCCCccCCCc
Q 015610 372 YGEFFKPCAFLAERAG-------KGATLSAPVE 397 (403)
Q Consensus 372 ~g~~~~p~~~l~~~~~-------~g~~f~~~~~ 397 (403)
++++|.|++++++|++ +|+|||+|++
T Consensus 556 ~~~~~~~~~~l~~~v~~g~~G~k~g~GfY~y~~ 588 (708)
T PRK11154 556 LGERFSAPAAFDKLLNDDRKGRKNGRGFYLYGQ 588 (708)
T ss_pred cCCCCCCCHHHHHHHHCCCCcccCCceEEECCC
Confidence 8999999999999996 4899999975
No 40
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.76 E-value=2.1e-17 Score=176.44 Aligned_cols=223 Identities=15% Similarity=0.106 Sum_probs=155.5
Q ss_pred cCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHHhcCCCchHHHHHHhhchHHHH-HHHH--------
Q 015610 161 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAITKFGMPMGPFRLADLVGFGVAI-ATGM-------- 230 (403)
Q Consensus 161 lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~~~~g~~~GPf~~~D~~Gld~~~-~~~~-------- 230 (403)
-|. .|++.|.......|....+-...-.+++.|. +.++.+.++..+-+. . .+.+..+.|.++ ++.|
T Consensus 335 ~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~--~~~~~~~aDlViEav~E~l~~K~~v 410 (715)
T PRK11730 335 KGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-L--DYAGFERVDVVVEAVVENPKVKAAV 410 (715)
T ss_pred CCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-C--CHHHhcCCCEEEecccCcHHHHHHH
Confidence 353 4444454444445555545455556677775 888888887433221 1 334556777665 2222
Q ss_pred --HHHHhCCCC-Cc---cccH-HHHHHH-cCCCccccCccccccCCCC-------CCCCChhHHHHHHHHhhccCccCCc
Q 015610 231 --QFIENFPER-TY---KSMI-IPIMQE-DKRAGETTRKGFYLYDERR-------KASPDPEVKKFIEKARSMSGVAIDP 295 (403)
Q Consensus 231 --~l~~~~~~~-~~---~~~~-l~~~v~-~G~~G~k~g~GFy~y~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (403)
.+.+..++. .. +|.+ +.++.+ ..+..|..|-|||++.... ...+++++.+.+.+.. ...|
T Consensus 411 f~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~-----~~lg 485 (715)
T PRK11730 411 LAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYA-----SKMG 485 (715)
T ss_pred HHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHHHH-----HHhC
Confidence 222223322 22 3444 566654 3788899999999987532 3567888766555442 2234
Q ss_pred c-cccc--chHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHh
Q 015610 296 K-FAKL--SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLY 372 (403)
Q Consensus 296 ~-~~~~--~~~~i~~r~~~~~~~ea~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~~~ 372 (403)
| ++.+ ++|||+||++.+++||++.++++| + +++|||.+|+.++|||+ |||+++|.+|+|.+.++++.+...+
T Consensus 486 k~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~G-a-~~e~ID~a~~~~~G~~~---GP~~~~D~~Gld~~~~~~~~~~~~~ 560 (715)
T PRK11730 486 KTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDG-A-DFRQIDKVMEKQFGWPM---GPAYLLDVVGIDTAHHAQAVMAEGF 560 (715)
T ss_pred CceEEecCcCchhHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHHhhCCCcc---CHHHHHHhhchHHHHHHHHHHHHhc
Confidence 4 3333 579999999999999999999999 6 89999999999999998 9999999999999999999999887
Q ss_pred CCC--CCccHHHHHHHH-------CCCCccCCCc
Q 015610 373 GEF--FKPCAFLAERAG-------KGATLSAPVE 397 (403)
Q Consensus 373 g~~--~~p~~~l~~~~~-------~g~~f~~~~~ 397 (403)
+++ +.|+++|++|++ +|+|||+|++
T Consensus 561 ~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~ 594 (715)
T PRK11730 561 PDRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEE 594 (715)
T ss_pred CCccccchhHHHHHHHHCCCCccccCCEeEeccc
Confidence 764 345789999996 4899999964
No 41
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.75 E-value=8e-17 Score=172.02 Aligned_cols=246 Identities=15% Similarity=0.141 Sum_probs=168.3
Q ss_pred CCCeEEEecCCCCCHHHHHHHHHHHHHcCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHHhcCCCch
Q 015610 134 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAITKFGMPMG 212 (403)
Q Consensus 134 ~~~lvevv~~~~t~~e~~~~~~~l~~~lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~~~~g~~~G 212 (403)
..+-+-|+... +--.-+ ...+..-|. +|++.|.......|....+-...-..++.|. +.++.+.++..+-.. -
T Consensus 334 ~i~~v~ViGaG-~MG~gI---A~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~ 407 (737)
T TIGR02441 334 PVKTLAVLGAG-LMGAGI---AQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-L 407 (737)
T ss_pred cccEEEEECCC-HhHHHH---HHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-C
Confidence 34556677653 211122 222333364 5555565555556665555555556677774 999998887443221 1
Q ss_pred HHHHHHhhchHHHHH-HHHH------HHH----hCCC-CCc---cccH-HHHHHH-cCCCccccCccccccCCCC-----
Q 015610 213 PFRLADLVGFGVAIA-TGMQ------FIE----NFPE-RTY---KSMI-IPIMQE-DKRAGETTRKGFYLYDERR----- 270 (403)
Q Consensus 213 Pf~~~D~~Gld~~~~-~~~~------l~~----~~~~-~~~---~~~~-l~~~v~-~G~~G~k~g~GFy~y~~~~----- 270 (403)
.+.++.+.|.++. +.|+ ++. ..+. ... +|.+ +.++.+ .++..+..|-|||++....
T Consensus 408 --~~~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEv 485 (737)
T TIGR02441 408 --DYSGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEI 485 (737)
T ss_pred --CHHHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEE
Confidence 2345667777663 3222 222 2232 222 3444 666754 4788899999999987543
Q ss_pred --CCCCChhHHHHHHHHhhccCccCCcc-cccc--chHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhcCCCCC
Q 015610 271 --KASPDPEVKKFIEKARSMSGVAIDPK-FAKL--SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPY 345 (403)
Q Consensus 271 --~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~i~~r~~~~~~~ea~~~l~egv~~~~~diD~~~~~g~gfp~~ 345 (403)
...+++++.+...+.. ...+| ++.+ .+|||+||++.+++|||++++++|+ ++++||.++ .++|||+
T Consensus 486 v~g~~Ts~~~~~~~~~~~-----~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv--~~~~ID~a~-~~~G~p~- 556 (737)
T TIGR02441 486 ITHDGTSKDTLASAVAVG-----LKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGV--DPKKLDKLT-TKFGFPV- 556 (737)
T ss_pred eCCCCCCHHHHHHHHHHH-----HHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCC--CHHHHHHHH-HHcCCCC-
Confidence 2567888766554442 22344 3322 5799999999999999999999998 799999997 6999999
Q ss_pred CCcHHHHHHHhCHHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHC-------CCCccCCCcc
Q 015610 346 RGGIMFWADSLGSKYIYSRLEEWSSLYGEFFK--PCAFLAERAGK-------GATLSAPVEE 398 (403)
Q Consensus 346 ~gGp~~~~d~~G~~~~~~~~~~~~~~~g~~~~--p~~~l~~~~~~-------g~~f~~~~~~ 398 (403)
|||+++|.+|+|..+++++.+.+.++++|. |++++++|++. |+|||+|+++
T Consensus 557 --GP~~l~D~vGld~~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~ 616 (737)
T TIGR02441 557 --GAATLADEVGVDVAEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEG 616 (737)
T ss_pred --CHHHHHHHhhHHHHHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCC
Confidence 999999999999999999999988888774 68999999964 8999999764
No 42
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.75 E-value=2e-17 Score=159.09 Aligned_cols=141 Identities=19% Similarity=0.117 Sum_probs=112.4
Q ss_pred HHHHHHc-CCCccccCccccccCCCC-------CCCCChhHHHHHHHHhhccCccCCcc-cccc--chHHHHHHHHHHHH
Q 015610 246 IPIMQED-KRAGETTRKGFYLYDERR-------KASPDPEVKKFIEKARSMSGVAIDPK-FAKL--SEKDIVEMIFFPVV 314 (403)
Q Consensus 246 l~~~v~~-G~~G~k~g~GFy~y~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~i~~r~~~~~~ 314 (403)
+.++.+. ++..+..|-+|++..+-. ...+++++.+.+...- ...+| +..+ .++++.||++.+++
T Consensus 126 ~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~T~~e~~~~~~~~~-----~~lgk~~v~v~d~pgfv~nRl~~~~~ 200 (291)
T PRK06035 126 IAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELS-----KKIGKIPIEVADVPGFFTTRFIEGWL 200 (291)
T ss_pred HHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCCCCHHHHHHHHHHH-----HHcCCeEEEeCCCCCeeHHHHHHHHH
Confidence 4555443 455666788999865421 2456777665544331 12233 2222 46999999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCC-CCCccHHHHHHHH------
Q 015610 315 NEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCAFLAERAG------ 387 (403)
Q Consensus 315 ~ea~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~~~g~-~~~p~~~l~~~~~------ 387 (403)
|||++++++|++ |++|||++|+.++|||+ |||+++|.+|+|.+.++++.+.+.+++ +|.|+++|++|++
T Consensus 201 ~ea~~~~~~g~a-~~~~iD~~~~~~~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~ 276 (291)
T PRK06035 201 LEAIRSFEIGIA-TIKDIDEMCKLAFGFPM---GPFELMDIIGIDTVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGD 276 (291)
T ss_pred HHHHHHHHcCCC-CHHHHHHHHhhcCCCcc---CHHHHHHHhhHHHHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcC
Confidence 999999999999 99999999999999998 999999999999999999999998886 8899999999996
Q ss_pred -C-----CCCccCC
Q 015610 388 -K-----GATLSAP 395 (403)
Q Consensus 388 -~-----g~~f~~~ 395 (403)
+ |+|||+|
T Consensus 277 k~~~~~~g~Gfy~y 290 (291)
T PRK06035 277 KKVKYGSKGGWFDY 290 (291)
T ss_pred CCCCCCCCceeeec
Confidence 4 7999998
No 43
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.75 E-value=3.7e-17 Score=174.23 Aligned_cols=223 Identities=14% Similarity=0.116 Sum_probs=154.0
Q ss_pred cCCCcEEecccchhhhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHHhcCCCchHHHHHHhhchHHHH-HHHH------HH
Q 015610 161 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAITKFGMPMGPFRLADLVGFGVAI-ATGM------QF 232 (403)
Q Consensus 161 lGk~~v~~~d~~G~i~nRi~~~~~~Ea~~l~~~G~-~~~~iD~a~~~~g~~~GPf~~~D~~Gld~~~-~~~~------~l 232 (403)
-|. +|++.|.....+.|....+-...-.+++.|. +.++.+.++..+-.. . .+.+..+.|.++ ++.| .+
T Consensus 335 ~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~--~~~~~~~aDlViEav~E~l~~K~~v 410 (714)
T TIGR02437 335 KGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-L--SYAGFDNVDIVVEAVVENPKVKAAV 410 (714)
T ss_pred CCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-C--CHHHhcCCCEEEEcCcccHHHHHHH
Confidence 354 4444444333344555444444446667775 899998887433221 1 334556666655 2222 22
Q ss_pred HH----hCCC-CCc---cccH-HHHHHH-cCCCccccCccccccCCCC-------CCCCChhHHHHHHHHhhccCccCCc
Q 015610 233 IE----NFPE-RTY---KSMI-IPIMQE-DKRAGETTRKGFYLYDERR-------KASPDPEVKKFIEKARSMSGVAIDP 295 (403)
Q Consensus 233 ~~----~~~~-~~~---~~~~-l~~~v~-~G~~G~k~g~GFy~y~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (403)
+. ..++ ... +|.+ +.++.+ ..+..|..|-|||++.... ...+++++.+.+.+.. ...+
T Consensus 411 f~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~-----~~lg 485 (714)
T TIGR02437 411 LAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYA-----SKMG 485 (714)
T ss_pred HHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHH-----HHcC
Confidence 32 2332 222 3444 666654 3788999999999987643 3567788766544431 2234
Q ss_pred c-cccc--chHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHh
Q 015610 296 K-FAKL--SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLY 372 (403)
Q Consensus 296 ~-~~~~--~~~~i~~r~~~~~~~ea~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~~~ 372 (403)
| ++.+ .+|||.||++.++++||..++++| + ++++||.++..++|||+ |||+++|.+|+|..+++++.+.+.+
T Consensus 486 k~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG-~-~~~~ID~a~~~~~G~p~---GPf~l~D~~Gld~~~~i~~~~~~~~ 560 (714)
T TIGR02437 486 KTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDG-A-DFVRIDKVMEKQFGWPM---GPAYLLDVVGIDTGHHAQAVMAEGF 560 (714)
T ss_pred CEEEEeCCcccchHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHHhcCCCcc---CHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 4 3333 579999999999999999999999 5 89999999999999999 9999999999999999999998888
Q ss_pred CCCC--CccHHHHHHHHC-------CCCccCCCc
Q 015610 373 GEFF--KPCAFLAERAGK-------GATLSAPVE 397 (403)
Q Consensus 373 g~~~--~p~~~l~~~~~~-------g~~f~~~~~ 397 (403)
++++ .|++++++|++. |+|||+|++
T Consensus 561 ~~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~ 594 (714)
T TIGR02437 561 PDRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEA 594 (714)
T ss_pred CcccccchhHHHHHHHHCCCCcccCCCEEEeccc
Confidence 7643 357899999964 899999964
No 44
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.74 E-value=1.7e-17 Score=159.82 Aligned_cols=143 Identities=19% Similarity=0.201 Sum_probs=111.0
Q ss_pred HHHHHc-CCCccccCccccccCCCC-------CCCCChhHHHHHHHHhhccCccCCcc-cccc--chHHHHHHHHHHHHH
Q 015610 247 PIMQED-KRAGETTRKGFYLYDERR-------KASPDPEVKKFIEKARSMSGVAIDPK-FAKL--SEKDIVEMIFFPVVN 315 (403)
Q Consensus 247 ~~~v~~-G~~G~k~g~GFy~y~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~i~~r~~~~~~~ 315 (403)
..+.+. .+..+..|-+|++..+.. ....++++.+.+...- ...+| +..+ .+++++||++.+++|
T Consensus 125 s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~~~~~~~~~~~-----~~~gk~~v~~~d~pg~i~nRl~~~~~~ 199 (292)
T PRK07530 125 TRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFV-----TKLGKTITVAEDFPAFIVNRILLPMIN 199 (292)
T ss_pred HHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCHHHHHHHHHHH-----HHcCCeEEEecCcCChHHHHHHHHHHH
Confidence 444433 344556688899854321 1346677655544431 12233 2222 459999999999999
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCC-CCCccHHHHHHH-------H
Q 015610 316 EACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCAFLAERA-------G 387 (403)
Q Consensus 316 ea~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~~~g~-~~~p~~~l~~~~-------~ 387 (403)
|++.++++|++ ++++||.++++|+|||+ |||+++|.+|++.+..+++.+.+.+++ +|.|+++|++|+ +
T Consensus 200 ea~~~~~~g~~-~~~~iD~~~~~g~g~~~---GP~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k 275 (292)
T PRK07530 200 EAIYTLYEGVG-SVEAIDTAMKLGANHPM---GPLELADFIGLDTCLSIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRK 275 (292)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccc
Confidence 99999999998 99999999999999987 999999999999999999999998876 899999999999 5
Q ss_pred CCCCccCCCcc
Q 015610 388 KGATLSAPVEE 398 (403)
Q Consensus 388 ~g~~f~~~~~~ 398 (403)
+|+|||+|++.
T Consensus 276 ~g~Gfy~y~~~ 286 (292)
T PRK07530 276 TGRGFYDYRGE 286 (292)
T ss_pred cCCEeeeCCCC
Confidence 69999999654
No 45
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.74 E-value=7.7e-17 Score=149.56 Aligned_cols=177 Identities=21% Similarity=0.233 Sum_probs=139.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||.+|+.+|.++||+|++||++.++.+.. .++|.. + ..+..|.+++||+||.+||.+
T Consensus 46 MG~~M~~nLik~G~kVtV~dr~~~k~~~f-----------~~~Ga~-----------v-~~sPaeVae~sDvvitmv~~~ 102 (327)
T KOG0409|consen 46 MGSAMVSNLIKAGYKVTVYDRTKDKCKEF-----------QEAGAR-----------V-ANSPAEVAEDSDVVITMVPNP 102 (327)
T ss_pred chHHHHHHHHHcCCEEEEEeCcHHHHHHH-----------HHhchh-----------h-hCCHHHHHhhcCEEEEEcCCh
Confidence 99999999999999999999999998776 367752 1 233347789999999999999
Q ss_pred hHHHHHHHHH--HHhhCCCCcEEEecCCCCCHH---HHHhhcCCCCcEEEEecC-CCCCCC------CeEEEecCCCCCH
Q 015610 81 VSLKQQIFAD--LEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHVM------PLLEIVRTNQTSP 148 (403)
Q Consensus 81 ~~~K~~~~~~--l~~~~~~~~ilasntStl~~~---~la~~~~~~~r~ig~hf~-~P~~~~------~lvevv~~~~t~~ 148 (403)
.++|..++.. +.+.++++....-.+||+++. +|++.+.. .+..|. +|++++ ..+.|+.| +++
T Consensus 103 ~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~----~~~~~vDAPVSGg~~~A~~G~Ltimag--Gde 176 (327)
T KOG0409|consen 103 KDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISN----KGGRFVDAPVSGGVKGAEEGTLTIMAG--GDE 176 (327)
T ss_pred HhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHh----CCCeEEeccccCCchhhhcCeEEEEec--CcH
Confidence 9999999985 556556665552235566654 77777653 378888 599853 44555555 599
Q ss_pred HHHHHHHHHHHHcCCCcEEecc-cch---hhhhhhHHHH----HHHHHHHHHc-CCCHHHHHHHH-Hh
Q 015610 149 QVIVDLLDIGKKIKKTPIVVGN-CTG---FAVNRMFFPY----TQAAFLLVER-GTDLYLIDRAI-TK 206 (403)
Q Consensus 149 e~~~~~~~l~~~lGk~~v~~~d-~~G---~i~nRi~~~~----~~Ea~~l~~~-G~~~~~iD~a~-~~ 206 (403)
++++++.++++.|||+.++++. +.| .+.|+|+.+. +.|++.+.+. |+++..+-+++ .+
T Consensus 177 ~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G 244 (327)
T KOG0409|consen 177 ALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTG 244 (327)
T ss_pred HHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 9999999999999999999975 344 6999998776 6899999976 99999999988 54
No 46
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.72 E-value=8.6e-17 Score=154.76 Aligned_cols=177 Identities=15% Similarity=0.256 Sum_probs=138.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||.+||..|+++|++|++||+++++++++. +.|.. ..++. +++++||+||+|+|+
T Consensus 10 mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~~-------------~~~~~~~~~~~aDivi~~vp~ 65 (291)
T TIGR01505 10 MGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGAV-------------TAETARQVTEQADVIFTMVPD 65 (291)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCCc-------------ccCCHHHHHhcCCEEEEecCC
Confidence 899999999999999999999998877653 34432 12333 668899999999999
Q ss_pred ChHHHHHHHH--HHHhhCCCCcEEEecCCCCCHH---HHHhhcCCCCcEEEEecCC-CCCC------CCeEEEecCCCCC
Q 015610 80 NVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAHV------MPLLEIVRTNQTS 147 (403)
Q Consensus 80 ~~~~K~~~~~--~l~~~~~~~~ilasntStl~~~---~la~~~~~~~r~ig~hf~~-P~~~------~~lvevv~~~~t~ 147 (403)
+.++|..++. .+.+.+++++++++ +|+.++. ++++.+..+ |+||++ |+.. ...+.++.| ++
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~i~~g--g~ 138 (291)
T TIGR01505 66 SPQVEEVAFGENGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLSIMVG--GD 138 (291)
T ss_pred HHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEEEEec--CC
Confidence 9999988875 36677899999985 5565654 566666432 777775 5542 233556666 47
Q ss_pred HHHHHHHHHHHHHcCCCcEEecc-cch---hhhhhhHHHH----HHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 015610 148 PQVIVDLLDIGKKIKKTPIVVGN-CTG---FAVNRMFFPY----TQAAFLLVER-GTDLYLIDRAI-TKFG 208 (403)
Q Consensus 148 ~e~~~~~~~l~~~lGk~~v~~~d-~~G---~i~nRi~~~~----~~Ea~~l~~~-G~~~~~iD~a~-~~~g 208 (403)
++++++++++++.+|+.+++++. .+| +++||++.+. ++|++.+.++ |++++++.+++ .+.+
T Consensus 139 ~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~ 209 (291)
T TIGR01505 139 QAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA 209 (291)
T ss_pred HHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 99999999999999999999975 566 6999998876 8999999975 89999999999 5544
No 47
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.67 E-value=1.5e-15 Score=146.57 Aligned_cols=177 Identities=16% Similarity=0.258 Sum_probs=136.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||.+||..|+++|++|++||++++..++.. +.|. ...+++ +.+++||+||+|+|+
T Consensus 13 mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g~-------------~~~~~~~e~~~~~d~vi~~vp~ 68 (296)
T PRK11559 13 MGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAGA-------------ETASTAKAVAEQCDVIITMLPN 68 (296)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCC-------------eecCCHHHHHhcCCEEEEeCCC
Confidence 799999999999999999999998876542 3332 234444 556899999999999
Q ss_pred ChHHHHHHHH--HHHhhCCCCcEEEecCCCCCHH---HHHhhcCCCCcEEEEecCC-CCCCC------CeEEEecCCCCC
Q 015610 80 NVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAHVM------PLLEIVRTNQTS 147 (403)
Q Consensus 80 ~~~~K~~~~~--~l~~~~~~~~ilasntStl~~~---~la~~~~~~~r~ig~hf~~-P~~~~------~lvevv~~~~t~ 147 (403)
+.+++..++. .+.+.++++++|++ +||.++. ++++.+..+ |+||++ |+... ..++++.| ++
T Consensus 69 ~~~~~~v~~~~~~~~~~~~~g~iiid-~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g~l~i~~g--g~ 141 (296)
T PRK11559 69 SPHVKEVALGENGIIEGAKPGTVVID-MSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDGTLSVMVG--GD 141 (296)
T ss_pred HHHHHHHHcCcchHhhcCCCCcEEEE-CCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhCcEEEEEC--CC
Confidence 9999888764 47778899999984 5565654 566665432 788885 65532 34556666 47
Q ss_pred HHHHHHHHHHHHHcCCCcEEecc-cchh---hhhhhHHHH----HHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 015610 148 PQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFFPY----TQAAFLLVER-GTDLYLIDRAI-TKFG 208 (403)
Q Consensus 148 ~e~~~~~~~l~~~lGk~~v~~~d-~~G~---i~nRi~~~~----~~Ea~~l~~~-G~~~~~iD~a~-~~~g 208 (403)
+++++++.++++.+|+.++++++ .+|+ ++||++.+. ++|++.++++ |++++++++++ .+.+
T Consensus 142 ~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~ 212 (296)
T PRK11559 142 KAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLA 212 (296)
T ss_pred HHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 89999999999999999999975 5665 589987664 7999999975 89999999998 4443
No 48
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.65 E-value=6.2e-15 Score=141.65 Aligned_cols=176 Identities=20% Similarity=0.224 Sum_probs=135.9
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||.+||.+|+++||+|++||+++++++... +.|. ..+.+. +++++||+||.|||.
T Consensus 7 mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g~-------------~~~~s~~~~~~~advVil~vp~ 62 (288)
T TIGR01692 7 MGGPMAANLLKAGHPVRVFDLFPDAVEEAV-----------AAGA-------------QAAASPAEAAEGADRVITMLPA 62 (288)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCHHHHHHHH-----------HcCC-------------eecCCHHHHHhcCCEEEEeCCC
Confidence 899999999999999999999998877653 3342 123344 668899999999999
Q ss_pred ChHHHHHHH--HHHHhhCCCCcEEEecCCCCCHH---HHHhhcCCCCcEEEEecC-CCCCC-------CCeEEEecCCCC
Q 015610 80 NVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHV-------MPLLEIVRTNQT 146 (403)
Q Consensus 80 ~~~~K~~~~--~~l~~~~~~~~ilasntStl~~~---~la~~~~~~~r~ig~hf~-~P~~~-------~~lvevv~~~~t 146 (403)
+.+++..++ ..+.+.+++++++++ +||++++ ++++.+.. .|++|. .|+.+ ..+..++.|
T Consensus 63 ~~~~~~v~~g~~~l~~~~~~g~~vid-~st~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~~~gg--- 134 (288)
T TIGR01692 63 GQHVISVYSGDEGILPKVAKGSLLID-CSTIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTFMVGG--- 134 (288)
T ss_pred hHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEEEECC---
Confidence 888877665 467777889999885 5577775 44444432 378888 48874 355555655
Q ss_pred CHHHHHHHHHHHHHcCCCcEEecc-cch---hhhhhhHHHH----HHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 015610 147 SPQVIVDLLDIGKKIKKTPIVVGN-CTG---FAVNRMFFPY----TQAAFLLVER-GTDLYLIDRAI-TKFG 208 (403)
Q Consensus 147 ~~e~~~~~~~l~~~lGk~~v~~~d-~~G---~i~nRi~~~~----~~Ea~~l~~~-G~~~~~iD~a~-~~~g 208 (403)
+++.+++++++++.+|+.++++++ ..| +++|+++... ++|++.+.+. |++++++.+++ .+.|
T Consensus 135 ~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~ 206 (288)
T TIGR01692 135 VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG 206 (288)
T ss_pred CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 789999999999999999999986 455 4888886554 7899999875 99999999998 5554
No 49
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.63 E-value=1.8e-15 Score=146.97 Aligned_cols=95 Identities=19% Similarity=0.138 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCCCCccHH
Q 015610 302 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAF 381 (403)
Q Consensus 302 ~~~i~~r~~~~~~~ea~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~~~~~~~~~~~~~g~~~~p~~~ 381 (403)
+++++||++.++++||..++++|++ ++++||.++..|+|||+++.|||+++|.+|++.+.+.+..+++.++++|.|+++
T Consensus 183 ~G~i~nr~~~~~~~Ea~~l~~~g~~-~~~~id~~~~~~~g~~~~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~ 261 (311)
T PRK06130 183 PGFIANRIQHALAREAISLLEKGVA-SAEDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHLAVASYLYQDLENRTTPSPL 261 (311)
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCccCCCHHHHhhhhccchHHHHHHHHHHhcCCcCCCCHH
Confidence 5899999999999999999999998 899999999999999998999999999999999999999999988889999999
Q ss_pred HHHHH-------HCCCCccCCCc
Q 015610 382 LAERA-------GKGATLSAPVE 397 (403)
Q Consensus 382 l~~~~-------~~g~~f~~~~~ 397 (403)
|++|+ ++|+|||+|++
T Consensus 262 l~~~~~~g~~G~~~g~gfy~y~~ 284 (311)
T PRK06130 262 LEEKVEAGELGAKSGQGFYAWPP 284 (311)
T ss_pred HHHHHHcCCccccCCCcCccCCC
Confidence 99999 56899999964
No 50
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.61 E-value=2.1e-14 Score=138.46 Aligned_cols=172 Identities=17% Similarity=0.188 Sum_probs=131.2
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||.+||..|+++||+|++||++++++++.. +.|. ....+. +++++||+||.|+|+
T Consensus 12 mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~aDvVi~~vp~ 67 (296)
T PRK15461 12 MGSPMASNLLKQGHQLQVFDVNPQAVDALV-----------DKGA-------------TPAASPAQAAAGAEFVITMLPN 67 (296)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCC-------------cccCCHHHHHhcCCEEEEecCC
Confidence 899999999999999999999999877653 3342 123344 667899999999999
Q ss_pred ChHHHHHHHH--HHHhhCCCCcEEEecCCCCCHH---HHHhhcCCCCcEEEEecC-CCCCCC-------CeEEEecCCCC
Q 015610 80 NVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHVM-------PLLEIVRTNQT 146 (403)
Q Consensus 80 ~~~~K~~~~~--~l~~~~~~~~ilasntStl~~~---~la~~~~~~~r~ig~hf~-~P~~~~-------~lvevv~~~~t 146 (403)
+..++..++. .+.+.+++++++++ +||.++. ++++.+.. .|.+|. .|+... .++.++.|
T Consensus 68 ~~~~~~vl~~~~~i~~~l~~g~lvid-~sT~~p~~~~~l~~~l~~----~g~~~ldapV~g~~~~a~~g~l~~~~gg--- 139 (296)
T PRK15461 68 GDLVRSVLFGENGVCEGLSRDALVID-MSTIHPLQTDKLIADMQA----KGFSMMDVPVGRTSDNAITGTLLLLAGG--- 139 (296)
T ss_pred HHHHHHHHcCcccHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH----cCCcEEEccCCCCHHHHHhCcEEEEECC---
Confidence 9888888774 46677889999874 6666764 56665542 267777 477643 44545555
Q ss_pred CHHHHHHHHHHHHHcCCCcEEeccc-ch---hhhhhhHHHH----HHHHHHHHHc-CCCHHHHHHHH
Q 015610 147 SPQVIVDLLDIGKKIKKTPIVVGNC-TG---FAVNRMFFPY----TQAAFLLVER-GTDLYLIDRAI 204 (403)
Q Consensus 147 ~~e~~~~~~~l~~~lGk~~v~~~d~-~G---~i~nRi~~~~----~~Ea~~l~~~-G~~~~~iD~a~ 204 (403)
+++++++++++++.+|+.++++++. .| +++|+++... +.|++.+.+. |++++.+-+++
T Consensus 140 ~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l 206 (296)
T PRK15461 140 TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVM 206 (296)
T ss_pred CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 8999999999999999999999762 33 5788866433 6899998875 99999987777
No 51
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.57 E-value=3e-14 Score=136.29 Aligned_cols=144 Identities=17% Similarity=0.183 Sum_probs=114.2
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||++||..|+.+|++|++||++++.++++. +.|.++ ...++.+.+++||+||.|+|++
T Consensus 11 mG~sla~~L~~~g~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~aDlVilavp~~ 68 (279)
T PRK07417 11 IGGSLGLDLRSLGHTVYGVSRRESTCERAI-----------ERGLVD-----------EASTDLSLLKDCDLVILALPIG 68 (279)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------cccCCHhHhcCCCEEEEcCCHH
Confidence 899999999999999999999999887764 445432 1233446678999999999988
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCC------------CCCeEEEecCCCCCH
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH------------VMPLLEIVRTNQTSP 148 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~------------~~~lvevv~~~~t~~ 148 (403)
.. ..+++++.+.++++++|++ ++|.+.+.+.....++.+|+|+||+++.. .++.+.+++++.+++
T Consensus 69 ~~--~~~~~~l~~~l~~~~ii~d-~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~ 145 (279)
T PRK07417 69 LL--LPPSEQLIPALPPEAIVTD-VGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDL 145 (279)
T ss_pred HH--HHHHHHHHHhCCCCcEEEe-CcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCH
Confidence 64 3467889888999999966 55557665554445556899999996432 356777999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEec
Q 015610 149 QVIVDLLDIGKKIKKTPIVVG 169 (403)
Q Consensus 149 e~~~~~~~l~~~lGk~~v~~~ 169 (403)
+.++.++++++.+|+.++++.
T Consensus 146 ~~~~~v~~l~~~lG~~~v~~~ 166 (279)
T PRK07417 146 NALAIVEELAVSLGSKIYTAD 166 (279)
T ss_pred HHHHHHHHHHHHcCCEEEEcC
Confidence 999999999999999999885
No 52
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.56 E-value=6.7e-14 Score=134.54 Aligned_cols=171 Identities=15% Similarity=0.230 Sum_probs=128.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||.+||.+|+++||+|++||++++ .++. .+.|.. ...+. +++++||+||.|||.
T Consensus 11 MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g~~-------------~~~s~~~~~~~advVi~~v~~ 65 (292)
T PRK15059 11 MGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLGAV-------------SVETARQVTEASDIIFIMVPD 65 (292)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcCCe-------------ecCCHHHHHhcCCEEEEeCCC
Confidence 899999999999999999999874 2322 234431 22333 567899999999999
Q ss_pred ChHHHHHHHHH--HHhhCCCCcEEEecCCCCCHH---HHHhhcCCCCcEEEEecC-CCCCC-------CCeEEEecCCCC
Q 015610 80 NVSLKQQIFAD--LEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHV-------MPLLEIVRTNQT 146 (403)
Q Consensus 80 ~~~~K~~~~~~--l~~~~~~~~ilasntStl~~~---~la~~~~~~~r~ig~hf~-~P~~~-------~~lvevv~~~~t 146 (403)
+.+++..++.. +.+.+.++.++++ +||.+++ ++++.+.. .|.+|. .|+.. ..+.-++.|
T Consensus 66 ~~~v~~v~~~~~g~~~~~~~g~ivvd-~sT~~p~~~~~~~~~~~~----~G~~~vdaPVsGg~~~a~~g~l~~~~gG--- 137 (292)
T PRK15059 66 TPQVEEVLFGENGCTKASLKGKTIVD-MSSISPIETKRFARQVNE----LGGDYLDAPVSGGEIGAREGTLSIMVGG--- 137 (292)
T ss_pred hHHHHHHHcCCcchhccCCCCCEEEE-CCCCCHHHHHHHHHHHHH----cCCCEEEecCCCCHHHHhcCcEEEEEcC---
Confidence 99999888753 6666788999876 5666766 55565532 266666 36653 355555555
Q ss_pred CHHHHHHHHHHHHHcCCCcEEeccc-ch---hhhhhhHHHH----HHHHHHHHHc-CCCHHHHHHHH
Q 015610 147 SPQVIVDLLDIGKKIKKTPIVVGNC-TG---FAVNRMFFPY----TQAAFLLVER-GTDLYLIDRAI 204 (403)
Q Consensus 147 ~~e~~~~~~~l~~~lGk~~v~~~d~-~G---~i~nRi~~~~----~~Ea~~l~~~-G~~~~~iD~a~ 204 (403)
+++++++++++++.+|++++++++. .| +++|+++... +.|++.+.+. |++++.+-+++
T Consensus 138 ~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l 204 (292)
T PRK15059 138 DEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQAL 204 (292)
T ss_pred CHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 8999999999999999999999873 33 5788887653 6899988875 99999988887
No 53
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.55 E-value=2.9e-13 Score=132.33 Aligned_cols=205 Identities=15% Similarity=0.087 Sum_probs=140.5
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCCC
Q 015610 2 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIEN 80 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e~ 80 (403)
|.+||.+|+.+||+|++||++++.++.. .++.+.+.| ++.+++. +++++||+||.|+|..
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~------~~~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~~ 92 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEE------LWKKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPFG 92 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHH------HHHHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCCc
Confidence 7899999999999999999999865431 112223344 2334444 6678999999999977
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHH----HhhcCCCCcEEEEecCCCCC--C--CCeEEEecCC------CC
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLI----GERTYSKDRIVGAHFFSPAH--V--MPLLEIVRTN------QT 146 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntStl~~~~l----a~~~~~~~r~ig~hf~~P~~--~--~~lvevv~~~------~t 146 (403)
. ..+.++..+.+.+++++||++ +||.++..+ .+.+..+.+.+|+||+.|.. . ..-++++.+. ..
T Consensus 93 ~-~v~~Vl~~L~~~L~~g~IVId-~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~ 170 (342)
T PRK12557 93 K-KTVEIAKNILPHLPENAVICN-TCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELA 170 (342)
T ss_pred H-HHHHHHHHHHhhCCCCCEEEE-ecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCC
Confidence 5 345566788888999999885 666676533 34455455678888886553 2 2234555544 23
Q ss_pred CHHHHHHHHHHHHHcCCCcEEecccch---hhhhhhHHHH----HHHHHHHHHc-CCCHHHHHHHH-HhcCCCchHHHHH
Q 015610 147 SPQVIVDLLDIGKKIKKTPIVVGNCTG---FAVNRMFFPY----TQAAFLLVER-GTDLYLIDRAI-TKFGMPMGPFRLA 217 (403)
Q Consensus 147 ~~e~~~~~~~l~~~lGk~~v~~~d~~G---~i~nRi~~~~----~~Ea~~l~~~-G~~~~~iD~a~-~~~g~~~GPf~~~ 217 (403)
+++.+++++++++.+|++++++....| ..+|+++.++ ..|++.+.+. |.+|.+.-+-+ ...- .|--.++
T Consensus 171 ~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~~--~~~a~l~ 248 (342)
T PRK12557 171 TEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMTL--QTMASLV 248 (342)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HHHHHHH
Confidence 899999999999999999988764333 4677777666 5788888876 77766554433 2211 2445777
Q ss_pred HhhchHHHHHHH
Q 015610 218 DLVGFGVAIATG 229 (403)
Q Consensus 218 D~~Gld~~~~~~ 229 (403)
-..|+|-....+
T Consensus 249 ~~~~~~~~~~~~ 260 (342)
T PRK12557 249 ETSGVDGLLKAL 260 (342)
T ss_pred HHhChHHHHHhc
Confidence 777777665543
No 54
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.53 E-value=2.5e-13 Score=138.16 Aligned_cols=177 Identities=16% Similarity=0.185 Sum_probs=129.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-c---ccCCCCeEEEe
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E---SFKDVDMVIEA 76 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~---~~~~aDlViea 76 (403)
||.+||.+|+++||+|++||+++++.+...+.- ...|.. .+....++ + .++.||+||.|
T Consensus 17 MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~-------~~~Ga~----------~~~~a~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 17 MGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGNL----------PLYGFKDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred HHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-------hhcCCc----------ccccCCCHHHHHhcCCCCCEEEEE
Confidence 999999999999999999999999987764210 001320 11233444 2 23459999999
Q ss_pred cCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHHhhcCCCCcEEEEecC-CCCCC-------CCeEEEecCCC
Q 015610 77 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHV-------MPLLEIVRTNQ 145 (403)
Q Consensus 77 v~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~---~la~~~~~~~r~ig~hf~-~P~~~-------~~lvevv~~~~ 145 (403)
||.+..++..+ ..+.+.+.++.|+++. ||.++. ++++.+.. .|+||+ .|+++ ++ . +++|
T Consensus 80 v~~~~aV~~Vi-~gl~~~l~~G~iiID~-sT~~~~~t~~~~~~l~~----~Gi~fldapVSGG~~gA~~G~-~-im~G-- 149 (493)
T PLN02350 80 VKAGAPVDQTI-KALSEYMEPGDCIIDG-GNEWYENTERRIKEAAE----KGLLYLGMGVSGGEEGARNGP-S-LMPG-- 149 (493)
T ss_pred CCCcHHHHHHH-HHHHhhcCCCCEEEEC-CCCCHHHHHHHHHHHHH----cCCeEEeCCCcCCHHHhcCCC-e-EEec--
Confidence 99999998877 6788888899999864 454543 55555532 389999 59974 35 4 4555
Q ss_pred CCHHHHHHHHHHHHHcCCC------cEEecc-cch---hhhhhhHHHH----HHHHHHHHHc--CCCHHHHHHHH
Q 015610 146 TSPQVIVDLLDIGKKIKKT------PIVVGN-CTG---FAVNRMFFPY----TQAAFLLVER--GTDLYLIDRAI 204 (403)
Q Consensus 146 t~~e~~~~~~~l~~~lGk~------~v~~~d-~~G---~i~nRi~~~~----~~Ea~~l~~~--G~~~~~iD~a~ 204 (403)
.+++++++++++++.++.. ++++++ +.| +++||.+... +.||+.+++. |++++++-+++
T Consensus 150 G~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf 224 (493)
T PLN02350 150 GSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVF 224 (493)
T ss_pred CCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 3899999999999999954 788876 344 4777775443 7899999864 89999998885
No 55
>PLN02858 fructose-bisphosphate aldolase
Probab=99.52 E-value=2.6e-13 Score=153.14 Aligned_cols=176 Identities=16% Similarity=0.142 Sum_probs=139.7
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||.+||.+|+++||+|++||+++++.++.. +.|.. ..++. +++++||+||.|+|+
T Consensus 15 MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~Ga~-------------~~~s~~e~a~~advVi~~l~~ 70 (1378)
T PLN02858 15 LSFELASSLLRSGFKVQAFEISTPLMEKFC-----------ELGGH-------------RCDSPAEAAKDAAALVVVLSH 70 (1378)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCCe-------------ecCCHHHHHhcCCEEEEEcCC
Confidence 899999999999999999999999887763 45531 24444 667889999999999
Q ss_pred ChHHHHHHHH--HHHhhCCCCcEEEecCCCCCHH---HHHhhcCCCCcEEE--EecC-CCCCC-------CCeEEEecCC
Q 015610 80 NVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVG--AHFF-SPAHV-------MPLLEIVRTN 144 (403)
Q Consensus 80 ~~~~K~~~~~--~l~~~~~~~~ilasntStl~~~---~la~~~~~~~r~ig--~hf~-~P~~~-------~~lvevv~~~ 144 (403)
+..++..+++ .+.+.+.++.++.+ +||++++ ++++.+.. .| ++|+ .|+.+ +.|..++.|
T Consensus 71 ~~~v~~V~~g~~g~~~~l~~g~iivd-~STi~p~~~~~la~~l~~----~g~~~~~lDaPVsGg~~~A~~G~L~imvGG- 144 (1378)
T PLN02858 71 PDQVDDVFFGDEGAAKGLQKGAVILI-RSTILPLQLQKLEKKLTE----RKEQIFLVDAYVSKGMSDLLNGKLMIIASG- 144 (1378)
T ss_pred hHHHHHHHhchhhHHhcCCCcCEEEE-CCCCCHHHHHHHHHHHHh----cCCceEEEEccCcCCHHHHhcCCeEEEEcC-
Confidence 9999998885 47777889999886 5677766 55555542 26 8888 59875 356666666
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEe-cc-cch---hhhhhhHHHH----HHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 015610 145 QTSPQVIVDLLDIGKKIKKTPIVV-GN-CTG---FAVNRMFFPY----TQAAFLLVER-GTDLYLIDRAI-TKFG 208 (403)
Q Consensus 145 ~t~~e~~~~~~~l~~~lGk~~v~~-~d-~~G---~i~nRi~~~~----~~Ea~~l~~~-G~~~~~iD~a~-~~~g 208 (403)
+++++++++++++.+|+.++++ ++ +.| +++|+++... +.||+.+.+. |++++.+-+++ .+.|
T Consensus 145 --~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g 217 (1378)
T PLN02858 145 --RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAG 217 (1378)
T ss_pred --CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 8999999999999999998865 65 233 6899987654 6899999875 99999999998 5554
No 56
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.48 E-value=8.7e-13 Score=133.52 Aligned_cols=178 Identities=14% Similarity=0.101 Sum_probs=129.5
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccc-c---CCCCeEEEe
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F---KDVDMVIEA 76 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~---~~aDlViea 76 (403)
||.+||.+|+++||+|++||+++++.+...+ ..|.- ..++...++++ + ..+|+||.|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~----------~~g~~---------~g~~~~~s~~e~v~~l~~~~~Ii~m 61 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLA----------EEGKG---------KKIVPAYTLEEFVASLEKPRKILLM 61 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHH----------hhCCC---------CCeEeeCCHHHHHhhCCCCCEEEEE
Confidence 9999999999999999999999999887642 11210 01234555532 3 358999999
Q ss_pred cCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHHhhcCCCCcEEEEecC-CCCCCC------CeEEEecCCCCC
Q 015610 77 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFF-SPAHVM------PLLEIVRTNQTS 147 (403)
Q Consensus 77 v~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~--~la~~~~~~~r~ig~hf~-~P~~~~------~lvevv~~~~t~ 147 (403)
||.+..++..+ ..|.+.+.++.||++.+++.+.+ +.++.+.. .|+||+ .|++++ ... +++| .+
T Consensus 62 v~~g~~v~~Vi-~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~----~Gi~fvdapVSGG~~gA~~G~s-iM~G--G~ 133 (459)
T PRK09287 62 VKAGAPVDAVI-EQLLPLLEKGDIIIDGGNSNYKDTIRREKELAE----KGIHFIGMGVSGGEEGALHGPS-IMPG--GQ 133 (459)
T ss_pred CCCchHHHHHH-HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCeEEecCCCCCHHHHhcCCE-EEEe--CC
Confidence 99999888876 67888899999998755333322 44444432 399999 599853 233 4444 38
Q ss_pred HHHHHHHHHHHHHcCCCc-------EEecc-cch---hhhhhhHHH----HHHHHHHHHHc--CCCHHHHHHHHH
Q 015610 148 PQVIVDLLDIGKKIKKTP-------IVVGN-CTG---FAVNRMFFP----YTQAAFLLVER--GTDLYLIDRAIT 205 (403)
Q Consensus 148 ~e~~~~~~~l~~~lGk~~-------v~~~d-~~G---~i~nRi~~~----~~~Ea~~l~~~--G~~~~~iD~a~~ 205 (403)
++++++++++++.++..+ .++++ +.| +++||.+.. .+.|++.++++ |++++++-+++.
T Consensus 134 ~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 134 KEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999887 78876 344 467776533 37899999973 899999988874
No 57
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.46 E-value=9.1e-13 Score=130.92 Aligned_cols=159 Identities=20% Similarity=0.211 Sum_probs=112.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||++||..|..+||+|++||+++.. +. .+.+++||+||+|+|++
T Consensus 110 mG~slA~~l~~~G~~V~~~d~~~~~---------------------~~---------------~~~~~~aDlVilavP~~ 153 (374)
T PRK11199 110 LGRLFAKMLTLSGYQVRILEQDDWD---------------------RA---------------EDILADAGMVIVSVPIH 153 (374)
T ss_pred hhHHHHHHHHHCCCeEEEeCCCcch---------------------hH---------------HHHHhcCCEEEEeCcHH
Confidence 8999999999999999999986310 00 02357899999999999
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHHhhcCCCCcEEEEecCCCCCCCCeEE--EecCCCCCHHHHHHHHH
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE--IVRTNQTSPQVIVDLLD 156 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntSt--l~~~~la~~~~~~~r~ig~hf~~P~~~~~lve--vv~~~~t~~e~~~~~~~ 156 (403)
. ...++.++.+ +++++||+++||+ .++..+.+... .+|+|.||++++....+.. ++..+.++++.++.+.+
T Consensus 154 ~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~ 228 (374)
T PRK11199 154 L--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLE 228 (374)
T ss_pred H--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHH
Confidence 6 5778888888 8999999999875 33445655443 3699999999765433322 34455588899999999
Q ss_pred HHHHcCCCcEEecc-cchhhhhhhH--HHH--HHHHHHHHHcCCCHHHH
Q 015610 157 IGKKIKKTPIVVGN-CTGFAVNRMF--FPY--TQAAFLLVERGTDLYLI 200 (403)
Q Consensus 157 l~~~lGk~~v~~~d-~~G~i~nRi~--~~~--~~Ea~~l~~~G~~~~~i 200 (403)
+++.+|..++++.. ....++..+. --+ +.++..+.+.+.+.+++
T Consensus 229 l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~ 277 (374)
T PRK11199 229 QIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL 277 (374)
T ss_pred HHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 99999999999853 2333333222 112 34555555556665554
No 58
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.44 E-value=1.5e-13 Score=120.89 Aligned_cols=136 Identities=20% Similarity=0.223 Sum_probs=104.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||.+||.+|+++||+|++||+++++.++.. +.|. +...++ +.+++||+||.|+|.
T Consensus 12 mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~-----------~~g~-------------~~~~s~~e~~~~~dvvi~~v~~ 67 (163)
T PF03446_consen 12 MGSAMARNLAKAGYEVTVYDRSPEKAEALA-----------EAGA-------------EVADSPAEAAEQADVVILCVPD 67 (163)
T ss_dssp HHHHHHHHHHHTTTEEEEEESSHHHHHHHH-----------HTTE-------------EEESSHHHHHHHBSEEEE-SSS
T ss_pred HHHHHHHHHHhcCCeEEeeccchhhhhhhH-----------Hhhh-------------hhhhhhhhHhhcccceEeeccc
Confidence 899999999999999999999999988774 4442 345565 667899999999999
Q ss_pred ChHHHHHHHH-HHHhhCCCCcEEEecCCCCCHH---HHHhhcCCCCcEEEEecCC-CCCC-------CCeEEEecCCCCC
Q 015610 80 NVSLKQQIFA-DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAHV-------MPLLEIVRTNQTS 147 (403)
Q Consensus 80 ~~~~K~~~~~-~l~~~~~~~~ilasntStl~~~---~la~~~~~~~r~ig~hf~~-P~~~-------~~lvevv~~~~t~ 147 (403)
+.+++..+++ .+.+.+.+++++++ +||.+++ ++++.+.. .|+||+. |+.+ ..+.-++.| +
T Consensus 68 ~~~v~~v~~~~~i~~~l~~g~iiid-~sT~~p~~~~~~~~~~~~----~g~~~vdapV~Gg~~~a~~g~l~~~~gG---~ 139 (163)
T PF03446_consen 68 DDAVEAVLFGENILAGLRPGKIIID-MSTISPETSRELAERLAA----KGVRYVDAPVSGGPPGAEEGTLTIMVGG---D 139 (163)
T ss_dssp HHHHHHHHHCTTHGGGS-TTEEEEE--SS--HHHHHHHHHHHHH----TTEEEEEEEEESHHHHHHHTTEEEEEES----
T ss_pred chhhhhhhhhhHHhhccccceEEEe-cCCcchhhhhhhhhhhhh----ccceeeeeeeecccccccccceEEEccC---C
Confidence 9998887775 27788899999985 5566765 55555542 2788984 8864 467777777 8
Q ss_pred HHHHHHHHHHHHHcCCCcEEe
Q 015610 148 PQVIVDLLDIGKKIKKTPIVV 168 (403)
Q Consensus 148 ~e~~~~~~~l~~~lGk~~v~~ 168 (403)
++++++++++++.+|++++++
T Consensus 140 ~~~~~~~~~~l~~~~~~v~~~ 160 (163)
T PF03446_consen 140 EEAFERVRPLLEAMGKNVYHY 160 (163)
T ss_dssp HHHHHHHHHHHHHHEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCceee
Confidence 999999999999999988843
No 59
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.44 E-value=1.4e-12 Score=126.36 Aligned_cols=121 Identities=12% Similarity=0.018 Sum_probs=90.9
Q ss_pred ccH-HHHHHH-cCCCccccCccccccCCCC-------CCCCChhHHHHHHHHhhccCccCCcc-cccc---chHHHHHHH
Q 015610 243 SMI-IPIMQE-DKRAGETTRKGFYLYDERR-------KASPDPEVKKFIEKARSMSGVAIDPK-FAKL---SEKDIVEMI 309 (403)
Q Consensus 243 ~~~-l~~~v~-~G~~G~k~g~GFy~y~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~i~~r~ 309 (403)
|.+ ..++.+ ..+..|..|-|||+++... ...+++++.+.+.+.- ...|| ++.+ ++|||+||+
T Consensus 120 S~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~~f~-----~~lGk~pV~v~kd~pGFi~NRl 194 (321)
T PRK07066 120 SGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIY-----RALGMRPLHVRKEVPGFIADRL 194 (321)
T ss_pred CccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHH-----HHcCCEeEecCCCCccHHHHHH
Confidence 444 455543 3777889999999987632 3567888776655542 22343 4444 579999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHH-HHHHHHHHH
Q 015610 310 FFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKY-IYSRLEEWS 369 (403)
Q Consensus 310 ~~~~~~ea~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~~~-~~~~~~~~~ 369 (403)
+.+++|||++++++|++ |++|||.+|+.|+|||.-.-|||+++|..|+|. +...++++.
T Consensus 195 ~~a~~~EA~~lv~eGva-s~edID~a~~~g~g~r~~~~Gpf~~~Dl~Gld~g~~~~~~~~g 254 (321)
T PRK07066 195 LEALWREALHLVNEGVA-TTGEIDDAIRFGAGIRWSFMGTFLTYTLAGGDAGMRHFMQQFG 254 (321)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHhhhcChHHHHHHHHHHhh
Confidence 99999999999999999 999999999999999722239999999999997 444445443
No 60
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.42 E-value=6.5e-12 Score=121.35 Aligned_cols=172 Identities=16% Similarity=0.109 Sum_probs=124.9
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccC---CCCeEEEe
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK---DVDMVIEA 76 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~---~aDlViea 76 (403)
||.+||.+|+++|++|++||+++++.+... +.|. +...+. +.++ .+|+||.|
T Consensus 11 mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~~~~advVi~~ 66 (299)
T PRK12490 11 MGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLGI-------------TARHSLEELVSKLEAPRTIWVM 66 (299)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHHhCCCCCEEEEE
Confidence 899999999999999999999998876652 3342 123344 2233 37999999
Q ss_pred cCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHHhhcCCCCcEEEEecCC-CCCCC------CeEEEecCCCC
Q 015610 77 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAHVM------PLLEIVRTNQT 146 (403)
Q Consensus 77 v~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~---~la~~~~~~~r~ig~hf~~-P~~~~------~lvevv~~~~t 146 (403)
+|.+..++..+ .++.+.++++.++++. ||.++. ++++.+.. .|++|.. |+.+. ...-++.|
T Consensus 67 vp~~~~~~~v~-~~i~~~l~~g~ivid~-st~~~~~~~~~~~~~~~----~g~~~vdapV~G~~~~a~~g~~~~~gG--- 137 (299)
T PRK12490 67 VPAGEVTESVI-KDLYPLLSPGDIVVDG-GNSRYKDDLRRAEELAE----RGIHYVDCGTSGGVWGLRNGYCLMVGG--- 137 (299)
T ss_pred ecCchHHHHHH-HHHhccCCCCCEEEEC-CCCCchhHHHHHHHHHH----cCCeEEeCCCCCCHHHHhcCCeEEecC---
Confidence 99997776655 6677778888888864 343332 55555542 2778884 88643 23434455
Q ss_pred CHHHHHHHHHHHHHcCC---CcEEeccc-ch---hhhhhhHHHH----HHHHHHHHHc-C--CCHHHHHHHHH
Q 015610 147 SPQVIVDLLDIGKKIKK---TPIVVGNC-TG---FAVNRMFFPY----TQAAFLLVER-G--TDLYLIDRAIT 205 (403)
Q Consensus 147 ~~e~~~~~~~l~~~lGk---~~v~~~d~-~G---~i~nRi~~~~----~~Ea~~l~~~-G--~~~~~iD~a~~ 205 (403)
+++++++++++++.+|+ .++++++. .| +++||++... +.||+.+.++ | ++++++-+++.
T Consensus 138 ~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~ 210 (299)
T PRK12490 138 DKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWR 210 (299)
T ss_pred CHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHc
Confidence 89999999999999997 67888762 23 5788876544 6899999975 7 89999988884
No 61
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.42 E-value=3.8e-12 Score=129.40 Aligned_cols=179 Identities=15% Similarity=0.102 Sum_probs=129.9
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-ccc---CCCCeEEEe
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF---KDVDMVIEA 76 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~---~~aDlViea 76 (403)
||.+||.+|+++||+|++||+++++.+...+.- ...|. .++.+.++ +.+ .++|+||.+
T Consensus 12 MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~-----------~i~~~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 12 MGQNLALNIASRGFKISVYNRTYEKTEEFVKKA-------KEGNT-----------RVKGYHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhh-------hhcCC-----------cceecCCHHHHHhcCCCCCEEEEE
Confidence 899999999999999999999999987764210 01121 12234455 333 369999999
Q ss_pred cCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHHhhcCCCCcEEEEecC-CCCCCC------CeEEEecCCCCC
Q 015610 77 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFF-SPAHVM------PLLEIVRTNQTS 147 (403)
Q Consensus 77 v~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~--~la~~~~~~~r~ig~hf~-~P~~~~------~lvevv~~~~t~ 147 (403)
|+....++..+ .++.+.+.++.||++.+++.+.+ +.++.+.. .|+||+ .|++++ ... +++| .+
T Consensus 74 v~~~~~v~~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~----~Gi~fldapVSGG~~gA~~G~~-lm~G--G~ 145 (470)
T PTZ00142 74 IKAGEAVDETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEE----KGILYLGMGVSGGEEGARYGPS-LMPG--GN 145 (470)
T ss_pred eCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH----cCCeEEcCCCCCCHHHHhcCCE-EEEe--CC
Confidence 99998887765 77888899999998766554433 44444432 399999 499853 224 5555 38
Q ss_pred HHHHHHHHHHHHHcCCC------cEEecc-cch---hhhhhhHH----HHHHHHHHHHH--cCCCHHHHHHHHH
Q 015610 148 PQVIVDLLDIGKKIKKT------PIVVGN-CTG---FAVNRMFF----PYTQAAFLLVE--RGTDLYLIDRAIT 205 (403)
Q Consensus 148 ~e~~~~~~~l~~~lGk~------~v~~~d-~~G---~i~nRi~~----~~~~Ea~~l~~--~G~~~~~iD~a~~ 205 (403)
++++++++++++.++.. ..++++ +.| ++++|.+. ..+.|++.+++ .|++++++-+++.
T Consensus 146 ~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~ 219 (470)
T PTZ00142 146 KEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFN 219 (470)
T ss_pred HHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 99999999999999987 677876 345 46666643 23789999986 5889999988874
No 62
>PLN02858 fructose-bisphosphate aldolase
Probab=99.39 E-value=6.4e-12 Score=142.01 Aligned_cols=178 Identities=19% Similarity=0.190 Sum_probs=135.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||.+||.+|+.+||+|++||++++++++.. +.|.. ...+. +.+++||+||.|||.
T Consensus 335 MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~Ga~-------------~~~s~~e~~~~aDvVi~~V~~ 390 (1378)
T PLN02858 335 MGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAGGL-------------AGNSPAEVAKDVDVLVIMVAN 390 (1378)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCCe-------------ecCCHHHHHhcCCEEEEecCC
Confidence 899999999999999999999998877653 34431 23344 667899999999999
Q ss_pred ChHHHHHHHH--HHHhhCCCCcEEEecCCCCCHH---HHHhhcCCCCcEEEEecC-CCCCC-------CCeEEEecCCCC
Q 015610 80 NVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHV-------MPLLEIVRTNQT 146 (403)
Q Consensus 80 ~~~~K~~~~~--~l~~~~~~~~ilasntStl~~~---~la~~~~~~~r~ig~hf~-~P~~~-------~~lvevv~~~~t 146 (403)
+.+++..+++ .+.+.+.++.++++ +||.+++ ++++.+... -.|+||+ +|+.+ +.+.-++.|
T Consensus 391 ~~~v~~Vl~g~~g~~~~l~~g~ivVd-~STvsP~~~~~la~~l~~~--g~g~~~lDAPVsGg~~~A~~G~L~imvgG--- 464 (1378)
T PLN02858 391 EVQAENVLFGDLGAVSALPAGASIVL-SSTVSPGFVIQLERRLENE--GRDIKLVDAPVSGGVKRAAMGTLTIMASG--- 464 (1378)
T ss_pred hHHHHHHHhchhhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHhh--CCCcEEEEccCCCChhhhhcCCceEEEEC---
Confidence 9999988875 36677888999875 5666765 455554320 1388988 48864 355666666
Q ss_pred CHHHHHHHHHHHHHcCCCcEEecccch-----hhhhhhHHHH----HHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 015610 147 SPQVIVDLLDIGKKIKKTPIVVGNCTG-----FAVNRMFFPY----TQAAFLLVER-GTDLYLIDRAI-TKFG 208 (403)
Q Consensus 147 ~~e~~~~~~~l~~~lGk~~v~~~d~~G-----~i~nRi~~~~----~~Ea~~l~~~-G~~~~~iD~a~-~~~g 208 (403)
+++++++++++++.+|+..+++...+| +++||++... ++|++.+.+. |++++.+-+++ .+.|
T Consensus 465 ~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g 537 (1378)
T PLN02858 465 TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGG 537 (1378)
T ss_pred CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcc
Confidence 789999999999999998887543233 5888887554 6899988865 99999998888 5544
No 63
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.39 E-value=1.7e-11 Score=118.61 Aligned_cols=172 Identities=19% Similarity=0.124 Sum_probs=124.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccC---CCCeEEEe
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK---DVDMVIEA 76 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~---~aDlViea 76 (403)
||.+||.+|+++|++|++||+++++.++.. +.|. +...+. +.++ ++|+||.|
T Consensus 11 MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~~~~e~~~~~~~~dvvi~~ 66 (301)
T PRK09599 11 MGGNMARRLLRGGHEVVGYDRNPEAVEALA-----------EEGA-------------TGADSLEELVAKLPAPRVVWLM 66 (301)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHhhcCCCCEEEEE
Confidence 899999999999999999999998877652 3442 123333 2223 47999999
Q ss_pred cCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHHhhcCCCCcEEEEecC-CCCCCC------CeEEEecCCCC
Q 015610 77 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHVM------PLLEIVRTNQT 146 (403)
Q Consensus 77 v~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~---~la~~~~~~~r~ig~hf~-~P~~~~------~lvevv~~~~t 146 (403)
+|.+..++..+ ..+.+.+++++++.+.+ +.++. ++++.+.. .|++|+ .|+.+. .+. ++.| .
T Consensus 67 v~~~~~~~~v~-~~l~~~l~~g~ivid~s-t~~~~~~~~~~~~~~~----~g~~~~dapvsG~~~~a~~g~~-~~~g--G 137 (301)
T PRK09599 67 VPAGEITDATI-DELAPLLSPGDIVIDGG-NSYYKDDIRRAELLAE----KGIHFVDVGTSGGVWGLERGYC-LMIG--G 137 (301)
T ss_pred ecCCcHHHHHH-HHHHhhCCCCCEEEeCC-CCChhHHHHHHHHHHH----cCCEEEeCCCCcCHHHHhcCCe-EEec--C
Confidence 99987666554 66777788888887543 33332 45555532 288888 488742 344 4444 3
Q ss_pred CHHHHHHHHHHHHHcCC----CcEEeccc-ch---hhhhhhHHHH----HHHHHHHHH---cCCCHHHHHHHHH
Q 015610 147 SPQVIVDLLDIGKKIKK----TPIVVGNC-TG---FAVNRMFFPY----TQAAFLLVE---RGTDLYLIDRAIT 205 (403)
Q Consensus 147 ~~e~~~~~~~l~~~lGk----~~v~~~d~-~G---~i~nRi~~~~----~~Ea~~l~~---~G~~~~~iD~a~~ 205 (403)
+++++++++++++.+++ .++++++. .| +++|+++... +.|++.+.+ .|++++++-+++.
T Consensus 138 ~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~ 211 (301)
T PRK09599 138 DKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWR 211 (301)
T ss_pred CHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHh
Confidence 89999999999999999 78888873 33 4677765443 689999886 4789999999884
No 64
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.36 E-value=1.4e-11 Score=121.90 Aligned_cols=165 Identities=15% Similarity=0.148 Sum_probs=117.9
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||++||..|.++|++|.+++++++..+.... ...|..+ ...+++ +++++||+||.|+|.
T Consensus 11 iG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~-----------~~~~~~~~~~~~aDlVilavP~ 70 (359)
T PRK06545 11 IGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID-----------ELAADLQRAAAEADLIVLAVPV 70 (359)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc-----------ccccCHHHHhcCCCEEEEeCCH
Confidence 8999999999999999999999876544321 1223221 122333 557899999999998
Q ss_pred ChHHHHHHHHHHHh-hCCCCcEEEecCCCCCHH---HHHhhcCCCCcEEEEecCCCCC------------CCCeEEEecC
Q 015610 80 NVSLKQQIFADLEK-YCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFSPAH------------VMPLLEIVRT 143 (403)
Q Consensus 80 ~~~~K~~~~~~l~~-~~~~~~ilasntStl~~~---~la~~~~~~~r~ig~hf~~P~~------------~~~lvevv~~ 143 (403)
+ ....++.++.+ .+++++||++.+|+ +.. .+.+.+.+..+|+|.|||...+ .+..+-++++
T Consensus 71 ~--~~~~vl~~l~~~~l~~~~ivtDv~Sv-K~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~ 147 (359)
T PRK06545 71 D--ATAALLAELADLELKPGVIVTDVGSV-KGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPD 147 (359)
T ss_pred H--HHHHHHHHHhhcCCCCCcEEEeCccc-cHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecC
Confidence 6 46788898887 47899999876655 443 3344345567899999986431 3455778999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCcEEecc-cchhhhhhhH--HHHHHHHH
Q 015610 144 NQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFAVNRMF--FPYTQAAF 188 (403)
Q Consensus 144 ~~t~~e~~~~~~~l~~~lGk~~v~~~d-~~G~i~nRi~--~~~~~Ea~ 188 (403)
+.++++.++.++++++.+|+.++++.. ....++..+. -.++.+++
T Consensus 148 ~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al 195 (359)
T PRK06545 148 DHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL 195 (359)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH
Confidence 999999999999999999999998843 3444544442 23445544
No 65
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.34 E-value=5.4e-11 Score=114.85 Aligned_cols=174 Identities=10% Similarity=0.057 Sum_probs=122.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||.+||.+|+++||+|++||++++++++.. +.|.... ....++ +.+.++|+||.|+|.
T Consensus 11 mG~~la~~L~~~g~~V~~~dr~~~~~~~l~-----------~~g~~~~----------~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 11 MGANIVRRLAKRGHDCVGYDHDQDAVKAMK-----------EDRTTGV----------ANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCCccc----------CCHHHHHhhcCCCCEEEEEcCc
Confidence 899999999999999999999999877663 3342110 001111 345679999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCCCC--HHHHHhhcCCCCcEEEEecCC-CCCCC------CeEEEecCCCCCHHH
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFS-PAHVM------PLLEIVRTNQTSPQV 150 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntStl~--~~~la~~~~~~~r~ig~hf~~-P~~~~------~lvevv~~~~t~~e~ 150 (403)
+ .++. ++.++.+.++++.+|++.+++.+ ..++++.+.. .|+||+. |+.+. .+.-++.| +++.
T Consensus 70 ~-~~~~-v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~----~g~~~vda~vsGg~~~a~~G~~~~~gG---~~~~ 140 (298)
T TIGR00872 70 G-IVDA-VLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKE----KGIHLLDCGTSGGVWGRERGYCFMIGG---DGEA 140 (298)
T ss_pred h-HHHH-HHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHh----cCCeEEecCCCCCHHHHhcCCeeeeCC---CHHH
Confidence 8 5554 45778888889998887554432 2244444432 3677774 77632 34445555 8999
Q ss_pred HHHHHHHHHHcCC---CcEEeccc-ch---hhhhhhHHHH----HHHHHHHHHc-C--CCHHHHHHHH
Q 015610 151 IVDLLDIGKKIKK---TPIVVGNC-TG---FAVNRMFFPY----TQAAFLLVER-G--TDLYLIDRAI 204 (403)
Q Consensus 151 ~~~~~~l~~~lGk---~~v~~~d~-~G---~i~nRi~~~~----~~Ea~~l~~~-G--~~~~~iD~a~ 204 (403)
++.++++++.++. ..+++++. .| +++++.+... +.|++.+++. | ++++++-+++
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~ 208 (298)
T TIGR00872 141 FARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVW 208 (298)
T ss_pred HHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 9999999999986 46788763 33 4566665432 6899999976 5 4999998887
No 66
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.33 E-value=1e-10 Score=111.02 Aligned_cols=174 Identities=17% Similarity=0.090 Sum_probs=123.6
Q ss_pred ChHHHHHHHHHCCC----ceEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEE
Q 015610 1 MGSGIATALILSNY----PVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVI 74 (403)
Q Consensus 1 MG~~iA~~la~~G~----~V~l~-d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVi 74 (403)
||.+||..|+++|+ +|+++ |+++++.+.+. +.|. +..++. +.+++||+||
T Consensus 11 mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g~-------------~~~~~~~e~~~~aDvVi 66 (266)
T PLN02688 11 MAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLGV-------------KTAASNTEVVKSSDVII 66 (266)
T ss_pred HHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcCC-------------EEeCChHHHHhcCCEEE
Confidence 89999999999998 89999 99998865542 3342 223444 5578999999
Q ss_pred EecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCC-CeEEEecCCCCCHHHHHH
Q 015610 75 EAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVM-PLLEIVRTNQTSPQVIVD 153 (403)
Q Consensus 75 eav~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~-~lvevv~~~~t~~e~~~~ 153 (403)
.|++ +.. ..+++.++.+.++++++|+|.+++++++.+.+..... +++..+|..|.... ....++.+..++++.++.
T Consensus 67 l~v~-~~~-~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~ 143 (266)
T PLN02688 67 LAVK-PQV-VKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLGPAATADDRDL 143 (266)
T ss_pred EEEC-cHH-HHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHH
Confidence 9995 444 5566677877788999888888999999888776543 67877776665433 445566777889999999
Q ss_pred HHHHHHHcCCCcEEeccc--------chhhhhhhHHHHHHHHHH--HHHcCCCHHHHHHHH
Q 015610 154 LLDIGKKIKKTPIVVGNC--------TGFAVNRMFFPYTQAAFL--LVERGTDLYLIDRAI 204 (403)
Q Consensus 154 ~~~l~~~lGk~~v~~~d~--------~G~i~nRi~~~~~~Ea~~--l~~~G~~~~~iD~a~ 204 (403)
++++++.+|+ ++++.+. .|. ... +...+.+++. ....|+++++..+++
T Consensus 144 v~~l~~~~G~-~~~~~e~~~d~~~~~~g~-g~a-~~~~~~~a~~ea~~~~Gl~~~~a~~~~ 201 (266)
T PLN02688 144 VATLFGAVGK-IWVVDEKLLDAVTGLSGS-GPA-YIFLAIEALADGGVAAGLPRDVALSLA 201 (266)
T ss_pred HHHHHHhCCC-EEEeCHHHcchhHhhhcC-HHH-HHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999 7776430 111 001 1222233321 345699999998887
No 67
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.33 E-value=4.5e-11 Score=121.59 Aligned_cols=178 Identities=16% Similarity=0.097 Sum_probs=126.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc----cccCCCCeEEEe
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY----ESFKDVDMVIEA 76 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~~~~aDlViea 76 (403)
||.+||.+|+++||+|++||+++++.++..+. ...|. .+....++ +.++.+|+||.|
T Consensus 10 MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~--------~~~g~-----------~~~~~~s~~e~v~~l~~~dvIil~ 70 (467)
T TIGR00873 10 MGSNLALNMADHGFTVSVYNRTPEKTDEFLAE--------HAKGK-----------KIVGAYSIEEFVQSLERPRKIMLM 70 (467)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh--------ccCCC-----------CceecCCHHHHHhhcCCCCEEEEE
Confidence 89999999999999999999999998766320 00011 01122233 234679999999
Q ss_pred cCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHHhhcCCCCcEEEEecC-CCCCCC------CeEEEecCCCCC
Q 015610 77 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFF-SPAHVM------PLLEIVRTNQTS 147 (403)
Q Consensus 77 v~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~--~la~~~~~~~r~ig~hf~-~P~~~~------~lvevv~~~~t~ 147 (403)
||.+..++..+ .++.+.++++.||++.+++.+.+ +.++.+.. .|+||+ .|++++ .. -+++| .+
T Consensus 71 v~~~~~v~~Vi-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~----~gi~fvdapVsGG~~gA~~G~-~im~G--G~ 142 (467)
T TIGR00873 71 VKAGAPVDAVI-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA----KGILFVGSGVSGGEEGARKGP-SIMPG--GS 142 (467)
T ss_pred CCCcHHHHHHH-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHh----cCCEEEcCCCCCCHHHHhcCC-cCCCC--CC
Confidence 99988777644 77888899999998766554333 34444432 388998 488753 22 34555 48
Q ss_pred HHHHHHHHHHHHHcCCCc------EEecc-cch---hhhhhhHHH----HHHHHHHHHH--cCCCHHHHHHHHH
Q 015610 148 PQVIVDLLDIGKKIKKTP------IVVGN-CTG---FAVNRMFFP----YTQAAFLLVE--RGTDLYLIDRAIT 205 (403)
Q Consensus 148 ~e~~~~~~~l~~~lGk~~------v~~~d-~~G---~i~nRi~~~----~~~Ea~~l~~--~G~~~~~iD~a~~ 205 (403)
++++++++++++.++..+ .++++ +.| +++||.+.. .+.|++.++. .|++++++-+++.
T Consensus 143 ~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~ 216 (467)
T TIGR00873 143 AEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFT 216 (467)
T ss_pred HHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999874 67775 344 467776533 2689999874 5899999988874
No 68
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.29 E-value=8.3e-11 Score=119.16 Aligned_cols=175 Identities=17% Similarity=0.097 Sum_probs=122.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||+++|..|..+|++|+++|++++...+.. .+.|. .++++. +.+.+||+||.|+|.
T Consensus 12 mG~slA~~L~~~G~~V~v~~r~~~~~~~~a----------~~~gv-------------~~~~~~~e~~~~aDvVIlavp~ 68 (437)
T PRK08655 12 LGKWFARFLKEKGFEVIVTGRDPKKGKEVA----------KELGV-------------EYANDNIDAAKDADIVIISVPI 68 (437)
T ss_pred HHHHHHHHHHHCCCEEEEEECChHHHHHHH----------HHcCC-------------eeccCHHHHhccCCEEEEecCH
Confidence 789999999999999999999987753321 12232 123344 567899999999998
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHHhhcCCCCcEEEEecCCCC----CCCCeEEEecCCCCCHHHHHH
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPA----HVMPLLEIVRTNQTSPQVIVD 153 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntSt--l~~~~la~~~~~~~r~ig~hf~~P~----~~~~lvevv~~~~t~~e~~~~ 153 (403)
+. -..++.++.+.++++++|++.+|+ .+.+.+.+.+....+|++.||+..+ ..+..+.+++++.++++.++.
T Consensus 69 ~~--~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~ 146 (437)
T PRK08655 69 NV--TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDK 146 (437)
T ss_pred HH--HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHH
Confidence 64 357788898889999999987774 2333455554444589999998633 246778889988889999999
Q ss_pred HHHHHHHcCCCcEEecc-cchhhhhhhHHH--HH--HHHHHHHHcCCCHHHH
Q 015610 154 LLDIGKKIKKTPIVVGN-CTGFAVNRMFFP--YT--QAAFLLVERGTDLYLI 200 (403)
Q Consensus 154 ~~~l~~~lGk~~v~~~d-~~G~i~nRi~~~--~~--~Ea~~l~~~G~~~~~i 200 (403)
+.++++.+|.+++.+.. ....++..+... ++ ..+..+.+.|.+.++.
T Consensus 147 v~~ll~~~G~~v~~~~~e~HD~~~a~vs~lph~~a~al~~~l~~~g~~~~~~ 198 (437)
T PRK08655 147 VKNFLEKEGARVIVTSPEEHDRIMSVVQGLTHFAYISIASTLKRLGVDIKES 198 (437)
T ss_pred HHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 99999999999988743 233343333221 22 2333333446665554
No 69
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.28 E-value=8.7e-11 Score=118.51 Aligned_cols=189 Identities=14% Similarity=0.132 Sum_probs=124.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGR--------VRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVD 71 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aD 71 (403)
||.++|..|+.+||+|++||++++.++...+. +...+.+.++ ..+++.++++ +++++||
T Consensus 11 ~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~------------~g~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 11 VGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALA------------AGRLRATTDYEDAIRDAD 78 (411)
T ss_pred hhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhh------------cCCeEEECCHHHHHhhCC
Confidence 89999999999999999999999998765311 0111111111 1335566666 5689999
Q ss_pred eEEEecCCChH--------HHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHHhhc-CC-C-Cc-EEEEecC-CCCCC-
Q 015610 72 MVIEAIIENVS--------LKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERT-YS-K-DR-IVGAHFF-SPAHV- 134 (403)
Q Consensus 72 lVieav~e~~~--------~K~~~~~~l~~~~~~~~ilasntStl~~~---~la~~~-~~-~-~r-~ig~hf~-~P~~~- 134 (403)
+||.|||.+.+ .-......+.+.++++++++. +||+++. ++...+ .+ . .+ ....+.. +|...
T Consensus 79 vvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~ 157 (411)
T TIGR03026 79 VIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLR 157 (411)
T ss_pred EEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCC
Confidence 99999998753 233445678888899998875 5666544 444322 11 0 00 1111111 34321
Q ss_pred -CCe-------EEEecCCCCCHHHHHHHHHHHHHcC-CCcEEeccc-c---hhhhhhhH----HHHHHHHHHHHHc-CCC
Q 015610 135 -MPL-------LEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGNC-T---GFAVNRMF----FPYTQAAFLLVER-GTD 196 (403)
Q Consensus 135 -~~l-------vevv~~~~t~~e~~~~~~~l~~~lG-k~~v~~~d~-~---G~i~nRi~----~~~~~Ea~~l~~~-G~~ 196 (403)
+.+ --++.| .+++..++++++++.++ +.++++.+. . .+++++++ .+++||+..+.+. |++
T Consensus 158 ~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD 235 (411)
T TIGR03026 158 EGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGID 235 (411)
T ss_pred CCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 111 134444 48999999999999998 678887652 2 26788887 4558999999976 999
Q ss_pred HHHHHHHH
Q 015610 197 LYLIDRAI 204 (403)
Q Consensus 197 ~~~iD~a~ 204 (403)
+.++-+++
T Consensus 236 ~~~v~~~~ 243 (411)
T TIGR03026 236 VYEVIEAA 243 (411)
T ss_pred HHHHHHHh
Confidence 99998888
No 70
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.27 E-value=4.8e-11 Score=112.82 Aligned_cols=139 Identities=18% Similarity=0.223 Sum_probs=103.1
Q ss_pred HHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCChH
Q 015610 5 IATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVS 82 (403)
Q Consensus 5 iA~~la~~G--~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~~~ 82 (403)
||..|.++| ++|+.+|++++.++.+. +.|.++. ...+.+.+.+||+||.|+|-+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~-----------~~g~~~~-----------~~~~~~~~~~~DlvvlavP~~~- 57 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL-----------ELGIIDE-----------ASTDIEAVEDADLVVLAVPVSA- 57 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH-----------HTTSSSE-----------EESHHHHGGCCSEEEE-S-HHH-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH-----------HCCCeee-----------ccCCHhHhcCCCEEEEcCCHHH-
Confidence 688888998 79999999999998884 6776542 2223577899999999998664
Q ss_pred HHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHHhhcCCCCcEEEEecCCCCC------------CCCeEEEecCCCCC
Q 015610 83 LKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFSPAH------------VMPLLEIVRTNQTS 147 (403)
Q Consensus 83 ~K~~~~~~l~~~~~~~~ilasntStl~~~---~la~~~~~~~r~ig~hf~~P~~------------~~~lvevv~~~~t~ 147 (403)
-..++.++.+.++++++|++.+|+ +.. .+.+.+....+|+|.|||+.+. .+..+.+++++.++
T Consensus 58 -~~~~l~~~~~~~~~~~iv~Dv~Sv-K~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~ 135 (258)
T PF02153_consen 58 -IEDVLEEIAPYLKPGAIVTDVGSV-KAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTD 135 (258)
T ss_dssp -HHHHHHHHHCGS-TTSEEEE--S--CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-
T ss_pred -HHHHHHHhhhhcCCCcEEEEeCCC-CHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCCh
Confidence 778889999999999999997776 433 3333334346899999998651 35788999999999
Q ss_pred HHHHHHHHHHHHHcCCCcEEe
Q 015610 148 PQVIVDLLDIGKKIKKTPIVV 168 (403)
Q Consensus 148 ~e~~~~~~~l~~~lGk~~v~~ 168 (403)
++.++.+..|++.+|.+++.+
T Consensus 136 ~~~~~~~~~l~~~~Ga~~~~~ 156 (258)
T PF02153_consen 136 PEALELVEELWEALGARVVEM 156 (258)
T ss_dssp HHHHHHHHHHHHHCT-EEEE-
T ss_pred HHHHHHHHHHHHHCCCEEEEc
Confidence 999999999999999998887
No 71
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.24 E-value=7.6e-10 Score=105.06 Aligned_cols=146 Identities=18% Similarity=0.172 Sum_probs=103.6
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCCC
Q 015610 2 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIEN 80 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e~ 80 (403)
|.+||.+|+++||+|++||+++++++... ++.+.+.|. ..+++. +++++||+||.|+|.+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~------~e~LaeaGA-------------~~AaS~aEAAa~ADVVIL~LPd~ 92 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDL------WKKVEDAGV-------------KVVSDDKEAAKHGEIHVLFTPFG 92 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhh------hHHHHHCCC-------------eecCCHHHHHhCCCEEEEecCCH
Confidence 78999999999999999999988764321 122234553 234444 7789999999999988
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcC----CCCcEEEEecCCCCC--CC--CeEEEecC------CCC
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY----SKDRIVGAHFFSPAH--VM--PLLEIVRT------NQT 146 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~----~~~r~ig~hf~~P~~--~~--~lvevv~~------~~t 146 (403)
..++..+ ..+.+.+++++++++ +||+++..+...+. ...+-+|+--|.|.. .+ .-.-++.| ...
T Consensus 93 aaV~eVl-~GLaa~L~~GaIVID-~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A 170 (341)
T TIGR01724 93 KGTFSIA-RTIIEHVPENAVICN-TCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMA 170 (341)
T ss_pred HHHHHHH-HHHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccC
Confidence 8887765 678888999999985 67889886655442 233445654444432 22 21222222 446
Q ss_pred CHHHHHHHHHHHHHcCCCcEEe
Q 015610 147 SPQVIVDLLDIGKKIKKTPIVV 168 (403)
Q Consensus 147 ~~e~~~~~~~l~~~lGk~~v~~ 168 (403)
++|.++++.++.+..|+.+.++
T Consensus 171 ~ee~i~~~~el~~~~~~~~~~~ 192 (341)
T TIGR01724 171 TEEQISKCVELAKSTGKKAYVV 192 (341)
T ss_pred CHHHHHHHHHHHHHhCCCeeec
Confidence 8999999999999999999987
No 72
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.24 E-value=1.1e-10 Score=116.29 Aligned_cols=183 Identities=14% Similarity=0.166 Sum_probs=117.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHH----HHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEE
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA----NLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIE 75 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~----~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVie 75 (403)
||.+||..|+. ||+|++||++++++++..+.+.. .+++++.+ ...+++.+++. +++++||+||+
T Consensus 11 vGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~----------~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 11 VGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQS----------DKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred HHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHh----------CCCcEEEecchhhhhcCCCEEEE
Confidence 89999988875 99999999999999887643211 12221111 12244444444 56799999999
Q ss_pred ecCCChHHH---------HHHHHHHHhhCCCCcEEEecCCCCCHH---HHHhhcCCCCcEEEEecCCCCCC--CCe----
Q 015610 76 AIIENVSLK---------QQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFSPAHV--MPL---- 137 (403)
Q Consensus 76 av~e~~~~K---------~~~~~~l~~~~~~~~ilasntStl~~~---~la~~~~~~~r~ig~hf~~P~~~--~~l---- 137 (403)
|||++.+.| ..+.+.|.+ ++++++++. .||.++. ++...+.. .|++| +|... +.+
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~-~STv~pgtt~~l~~~~~~----~~v~~-~PE~l~~G~a~~d~ 152 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVI-KSTVPVGFTAAMHKKYRT----ENIIF-SPEFLREGKALYDN 152 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEE-eeecCCchHHHHHHHhhc----CcEEE-CcccccCCcccccc
Confidence 999986554 233356766 578888864 5566654 55544321 14443 56542 222
Q ss_pred ----EEEecCCCCCHHHHHHHHHHHHH--cCCCcE-Eeccc-c---hhhhhhhHHHH----HHHHHHHHHc-CCCHHHHH
Q 015610 138 ----LEIVRTNQTSPQVIVDLLDIGKK--IKKTPI-VVGNC-T---GFAVNRMFFPY----TQAAFLLVER-GTDLYLID 201 (403)
Q Consensus 138 ----vevv~~~~t~~e~~~~~~~l~~~--lGk~~v-~~~d~-~---G~i~nRi~~~~----~~Ea~~l~~~-G~~~~~iD 201 (403)
..|+.+ +++..+++.+++.. ++..+. ++.+. . -+++++++.+. +||+..+.+. |+++.++-
T Consensus 153 ~~p~rvv~G~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~eV~ 229 (388)
T PRK15057 153 LHPSRIVIGE---RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQII 229 (388)
T ss_pred cCCCEEEEEc---CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHH
Confidence 334444 45667788888754 554443 45442 2 26788887554 8999999876 99999998
Q ss_pred HHH
Q 015610 202 RAI 204 (403)
Q Consensus 202 ~a~ 204 (403)
+++
T Consensus 230 ~a~ 232 (388)
T PRK15057 230 EGV 232 (388)
T ss_pred HHh
Confidence 887
No 73
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.23 E-value=7.3e-10 Score=105.80 Aligned_cols=142 Identities=16% Similarity=0.171 Sum_probs=105.2
Q ss_pred ChHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~ 78 (403)
||++||..|.++|+ +|+++|++++.++.+. +.|..+ ...+.+++.+||+||.|+|
T Consensus 11 mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~~~------------~~~~~~~~~~aD~Vilavp 67 (275)
T PRK08507 11 MGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGLVD------------EIVSFEELKKCDVIFLAIP 67 (275)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCCCc------------ccCCHHHHhcCCEEEEeCc
Confidence 89999999999996 7899999999877653 345321 1223433456999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcC--CCCcEEEEecCCC------CC------CCCeEEEecCC
Q 015610 79 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY--SKDRIVGAHFFSP------AH------VMPLLEIVRTN 144 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~--~~~r~ig~hf~~P------~~------~~~lvevv~~~ 144 (403)
.+. -..++.++.+ ++++++|++.+|+ +. .+.+.+. .+.+|++.||+.+ .. .+..+.+++++
T Consensus 68 ~~~--~~~~~~~l~~-l~~~~iv~d~gs~-k~-~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~ 142 (275)
T PRK08507 68 VDA--IIEILPKLLD-IKENTTIIDLGST-KA-KIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVE 142 (275)
T ss_pred HHH--HHHHHHHHhc-cCCCCEEEECccc-hH-HHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCC
Confidence 875 4456677877 8899999885554 33 3333332 2357999999853 21 34677888888
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEecc
Q 015610 145 QTSPQVIVDLLDIGKKIKKTPIVVGN 170 (403)
Q Consensus 145 ~t~~e~~~~~~~l~~~lGk~~v~~~d 170 (403)
.++++.++.+.++++.+|..++++..
T Consensus 143 ~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 143 KSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred CCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 88999999999999999999999853
No 74
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.23 E-value=1.1e-12 Score=132.48 Aligned_cols=142 Identities=16% Similarity=0.131 Sum_probs=107.6
Q ss_pred HHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecC----------
Q 015610 10 ILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAII---------- 78 (403)
Q Consensus 10 a~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~---------- 78 (403)
+.+|++|++||++++.++.....+++.+... + . ..+++.++|+ +++++||+||++++
T Consensus 26 ~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~---~-~--------~~~I~~ttD~~eal~~AD~Vi~ai~~~~~~~~~~d 93 (423)
T cd05297 26 ELSGSTIALMDIDEERLETVEILAKKIVEEL---G-A--------PLKIEATTDRREALDGADFVINTIQVGGHEYTETD 93 (423)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C-C--------CeEEEEeCCHHHHhcCCCEEEEeeEecCccchhhh
Confidence 5668999999999999888766665444321 1 1 1356677886 78999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcC--CCCcEEEEecCCCCCCC-----CeEEEecCCCCCHHHH
Q 015610 79 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY--SKDRIVGAHFFSPAHVM-----PLLEIVRTNQTSPQVI 151 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~--~~~r~ig~hf~~P~~~~-----~lvevv~~~~t~~e~~ 151 (403)
|+..+|..+++++++.+++++++.+|+|+..+.++++.+. .| +++.+||.||+..+ +..+ +..-.+...++
T Consensus 94 e~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNPv~i~t~~~~k~~~-~rviG~c~~~~ 171 (423)
T cd05297 94 FEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANPMAELTWALNRYTP-IKTVGLCHGVQ 171 (423)
T ss_pred hhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCChHHHHHHHHHHhCC-CCEEEECCcHH
Confidence 4689999999999999999999999999999999999986 37 89999999999643 2222 11111222355
Q ss_pred HHHHHHHHHcCCCc
Q 015610 152 VDLLDIGKKIKKTP 165 (403)
Q Consensus 152 ~~~~~l~~~lGk~~ 165 (403)
.....+.+.+|+.+
T Consensus 172 ~~~~~~a~~l~~~~ 185 (423)
T cd05297 172 GTAEQLAKLLGEPP 185 (423)
T ss_pred HHHHHHHHHhCCCH
Confidence 56667778888754
No 75
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.22 E-value=1.8e-10 Score=109.38 Aligned_cols=144 Identities=15% Similarity=0.188 Sum_probs=109.0
Q ss_pred ChHHHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcccccc--ccccCCCCeEEEe
Q 015610 1 MGSGIATALILSNYPVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--YESFKDVDMVIEA 76 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~--~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~~~~~aDlViea 76 (403)
||+++|..+..+|+.|.++++ +.+.++.+ .+.|.+++ .+.+ .++++++|+||-|
T Consensus 14 iG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-----------~~lgv~d~-----------~~~~~~~~~~~~aD~Viva 71 (279)
T COG0287 14 MGGSLARALKEAGLVVRIIGRDRSAATLKAA-----------LELGVIDE-----------LTVAGLAEAAAEADLVIVA 71 (279)
T ss_pred HHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-----------hhcCcccc-----------cccchhhhhcccCCEEEEe
Confidence 899999999999998866555 45555544 24565432 1222 3667889999999
Q ss_pred cCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcC-CCC--cEEEEecCCCCC------CCCeEEEecCCCCC
Q 015610 77 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY-SKD--RIVGAHFFSPAH------VMPLLEIVRTNQTS 147 (403)
Q Consensus 77 v~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~-~~~--r~ig~hf~~P~~------~~~lvevv~~~~t~ 147 (403)
||-. .-.++++++...+++++||++.||+ ...-+..... .|+ +|+|.||+..++ .+..+.+++++.++
T Consensus 72 vPi~--~~~~~l~~l~~~l~~g~iv~Dv~S~-K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~ 148 (279)
T COG0287 72 VPIE--ATEEVLKELAPHLKKGAIVTDVGSV-KSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSEGTE 148 (279)
T ss_pred ccHH--HHHHHHHHhcccCCCCCEEEecccc-cHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCCCCC
Confidence 9966 4667888898899999999998887 4332322222 223 799999998552 35778899999999
Q ss_pred HHHHHHHHHHHHHcCCCcEEec
Q 015610 148 PQVIVDLLDIGKKIKKTPIVVG 169 (403)
Q Consensus 148 ~e~~~~~~~l~~~lGk~~v~~~ 169 (403)
.+.++.++.+++.+|..++.+.
T Consensus 149 ~~~~~~~~~~~~~~ga~~v~~~ 170 (279)
T COG0287 149 KEWVEEVKRLWEALGARLVEMD 170 (279)
T ss_pred HHHHHHHHHHHHHcCCEEEEcC
Confidence 9999999999999999998884
No 76
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.22 E-value=4.7e-10 Score=113.11 Aligned_cols=186 Identities=14% Similarity=0.144 Sum_probs=121.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHH--------HHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCe
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIG--------RVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDM 72 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~--------~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 72 (403)
||.++|..|+.+||+|++||++++.++.... .+...+.+.++.| +++.+++ +++||+
T Consensus 14 ~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g------------~l~~~~~---~~~aDv 78 (415)
T PRK11064 14 IGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG------------YLRATTT---PEPADA 78 (415)
T ss_pred hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC------------ceeeecc---cccCCE
Confidence 8999999999999999999999999876421 1111122222223 2333333 458999
Q ss_pred EEEecCCCh--------HHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHHhhcCC--CC-cE-------EEEec-CC
Q 015610 73 VIEAIIENV--------SLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYS--KD-RI-------VGAHF-FS 130 (403)
Q Consensus 73 Vieav~e~~--------~~K~~~~~~l~~~~~~~~ilasntStl~~~---~la~~~~~--~~-r~-------ig~hf-~~ 130 (403)
||.|||.+. .--....+.+.+.++++++++. .||.++. +++..+.. +. ++ ...|+ ++
T Consensus 79 vii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~-~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~ 157 (415)
T PRK11064 79 FLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVIL-ESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYC 157 (415)
T ss_pred EEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEE-eCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEEC
Confidence 999999862 2223345778889999999875 4555543 44433321 00 00 01122 25
Q ss_pred C--CCCCCeE-------EEecCCCCCHHHHHHHHHHHHHcCCCcEEeccc-c---hhhhhhhHHHH----HHHHHHHHHc
Q 015610 131 P--AHVMPLL-------EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-T---GFAVNRMFFPY----TQAAFLLVER 193 (403)
Q Consensus 131 P--~~~~~lv-------evv~~~~t~~e~~~~~~~l~~~lGk~~v~~~d~-~---G~i~nRi~~~~----~~Ea~~l~~~ 193 (403)
| ...+..+ -++.| .+++..++++++++.+++.++++.+. . -+++++++.+. +||+..+.+.
T Consensus 158 PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~ 235 (415)
T PRK11064 158 PERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICAD 235 (415)
T ss_pred CCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 2222212 34544 48999999999999999888877652 2 26788887554 7999999976
Q ss_pred -CCCHHHHHHHH
Q 015610 194 -GTDLYLIDRAI 204 (403)
Q Consensus 194 -G~~~~~iD~a~ 204 (403)
|+++.++-+++
T Consensus 236 ~GiD~~~v~~~~ 247 (415)
T PRK11064 236 QGINVWELIRLA 247 (415)
T ss_pred hCCCHHHHHHHh
Confidence 99999998877
No 77
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.15 E-value=6e-10 Score=108.09 Aligned_cols=144 Identities=13% Similarity=0.118 Sum_probs=106.8
Q ss_pred ChHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEec
Q 015610 1 MGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAI 77 (403)
Q Consensus 1 MG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav 77 (403)
||.++|..|+.+|+ +|++||++++.++.+. +.|... ....+. +.+++||+||.|+
T Consensus 17 mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~~aDvViiav 74 (307)
T PRK07502 17 IGSSLARAIRRLGLAGEIVGADRSAETRARAR-----------ELGLGD-----------RVTTSAAEAVKGADLVILCV 74 (307)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-----------hCCCCc-----------eecCCHHHHhcCCCEEEECC
Confidence 79999999999995 8999999998876653 334321 122333 5578999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHHhhcCCCCcEEEEecCCCCC------------CCCeEEEec
Q 015610 78 IENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFSPAH------------VMPLLEIVR 142 (403)
Q Consensus 78 ~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~---~la~~~~~~~r~ig~hf~~P~~------------~~~lvevv~ 142 (403)
|... ...++.++.+.++++++|++.+| .+.. .+.+.+....||++.|++++.+ .+..+.+++
T Consensus 75 p~~~--~~~v~~~l~~~l~~~~iv~dvgs-~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~ 151 (307)
T PRK07502 75 PVGA--SGAVAAEIAPHLKPGAIVTDVGS-VKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTP 151 (307)
T ss_pred CHHH--HHHHHHHHHhhCCCCCEEEeCcc-chHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeC
Confidence 9864 46777888888899999876554 3533 3333333444899999997533 124466888
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEec
Q 015610 143 TNQTSPQVIVDLLDIGKKIKKTPIVVG 169 (403)
Q Consensus 143 ~~~t~~e~~~~~~~l~~~lGk~~v~~~ 169 (403)
...++++.++.+.++++.+|..++++.
T Consensus 152 ~~~~~~~~~~~~~~l~~~lG~~~~~~~ 178 (307)
T PRK07502 152 PEGTDPAAVARLTAFWRALGARVEEMD 178 (307)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 888899999999999999999998874
No 78
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.08 E-value=8.2e-09 Score=98.01 Aligned_cols=175 Identities=17% Similarity=0.126 Sum_probs=120.7
Q ss_pred ChHHHHHHHHHCC---CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEe
Q 015610 1 MGSGIATALILSN---YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEA 76 (403)
Q Consensus 1 MG~~iA~~la~~G---~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViea 76 (403)
||..+|..+.++| ++|+++|++++..++..+. .|. ..+.+. +.+.+||+||.|
T Consensus 13 mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~----------~g~-------------~~~~~~~~~~~~advVil~ 69 (267)
T PRK11880 13 MASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEE----------YGV-------------RAATDNQEAAQEADVVVLA 69 (267)
T ss_pred HHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHh----------cCC-------------eecCChHHHHhcCCEEEEE
Confidence 7899999999999 7999999999887655321 121 123343 456899999999
Q ss_pred cCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCC-CeEEEecCCCCCHHHHHHHH
Q 015610 77 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVM-PLLEIVRTNQTSPQVIVDLL 155 (403)
Q Consensus 77 v~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~-~lvevv~~~~t~~e~~~~~~ 155 (403)
++... -.+++.++.+.+ +++|.|.+++++.+.+...+.+..+++.+|+..|.... ....++++..++++..+.++
T Consensus 70 v~~~~--~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~ 145 (267)
T PRK11880 70 VKPQV--MEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANALVSAEDRELVE 145 (267)
T ss_pred cCHHH--HHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCCCCCHHHHHHHH
Confidence 97553 445666666555 46777888889998888777655689999998776543 44557788889999999999
Q ss_pred HHHHHcCCCcEEec-cc--chhh-hh----hhHHHHHHHHH-HHH-HcCCCHHHHHHHH
Q 015610 156 DIGKKIKKTPIVVG-NC--TGFA-VN----RMFFPYTQAAF-LLV-ERGTDLYLIDRAI 204 (403)
Q Consensus 156 ~l~~~lGk~~v~~~-d~--~G~i-~n----Ri~~~~~~Ea~-~l~-~~G~~~~~iD~a~ 204 (403)
.+++.+|.. +++. +. .... .. ..+. .+.|++ ... +.|+++++...++
T Consensus 146 ~l~~~lG~~-~~~~~e~~~d~~~a~~~~~pa~~~-~~~~~~~~~~~~~Gl~~~~a~~~~ 202 (267)
T PRK11880 146 NLLSAFGKV-VWVDDEKQMDAVTAVSGSGPAYVF-LFIEALADAGVKLGLPREQARKLA 202 (267)
T ss_pred HHHHhCCeE-EEECChHhcchHHHHhcChHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999974 4443 21 1111 11 1222 233443 333 4689888887776
No 79
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.08 E-value=8.8e-09 Score=104.01 Aligned_cols=185 Identities=14% Similarity=0.084 Sum_probs=121.2
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--C---HHHHHHhhcCccccccccccCCCCeEEE
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM--T---QEKFEKTISLLTGVLDYESFKDVDMVIE 75 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~--~---~~~~~~~~~~i~~~~~~~~~~~aDlVie 75 (403)
||.++|.+|+. ||+|++||+++++++... +|.. . .++... ..++.++++.+++++||+||.
T Consensus 17 vGlpmA~~la~-~~~V~g~D~~~~~ve~l~------------~G~~~~~e~~~~~l~~-~g~l~~t~~~~~~~~advvii 82 (425)
T PRK15182 17 VGLPLAVEFGK-SRQVVGFDVNKKRILELK------------NGVDVNLETTEEELRE-ARYLKFTSEIEKIKECNFYII 82 (425)
T ss_pred chHHHHHHHhc-CCEEEEEeCCHHHHHHHH------------CcCCCCCCCCHHHHHh-hCCeeEEeCHHHHcCCCEEEE
Confidence 89999999887 699999999999988763 2321 0 111111 234566777777899999999
Q ss_pred ecCCC------hHHHHHHH--HHHHhhCCCCcEEEecCCCCCHH---HHHhh-cCCC------CcEEEEecCCCCCC---
Q 015610 76 AIIEN------VSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGER-TYSK------DRIVGAHFFSPAHV--- 134 (403)
Q Consensus 76 av~e~------~~~K~~~~--~~l~~~~~~~~ilasntStl~~~---~la~~-~~~~------~r~ig~hf~~P~~~--- 134 (403)
|||.+ .+++.... +.|.+.++++++++. .||.++. +++.. +... +.|.-. ++|...
T Consensus 83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~-~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~--~~PE~v~~G 159 (425)
T PRK15182 83 TVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVY-ESTVYPGCTEEECVPILARMSGMTFNQDFYVG--YSPERINPG 159 (425)
T ss_pred EcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEE-ecCCCCcchHHHHHHHHHhccCCCcCCCeeEe--eCCCcCCCC
Confidence 99987 34455554 358888999998874 5566654 23222 1110 011111 123321
Q ss_pred ------CCeEEEecCCCCCHHHHHHHHHHHHHcC-CCcEEecc-cch---hhhhhhHHHH----HHHHHHHHHc-CCCHH
Q 015610 135 ------MPLLEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGN-CTG---FAVNRMFFPY----TQAAFLLVER-GTDLY 198 (403)
Q Consensus 135 ------~~lvevv~~~~t~~e~~~~~~~l~~~lG-k~~v~~~d-~~G---~i~nRi~~~~----~~Ea~~l~~~-G~~~~ 198 (403)
..+--|+.| .+++..+.+..+++.+. ..++++.+ ..+ +++|+++.+. +||+..+.++ |+++.
T Consensus 160 ~a~~~~~~~~riv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~ 237 (425)
T PRK15182 160 DKKHRLTNIKKITSG--STAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTE 237 (425)
T ss_pred cccccccCCCeEEEC--CCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHH
Confidence 111225555 35788899999999875 34666654 222 6888887655 7999999876 99999
Q ss_pred HHHHHH
Q 015610 199 LIDRAI 204 (403)
Q Consensus 199 ~iD~a~ 204 (403)
++-+++
T Consensus 238 ~v~~a~ 243 (425)
T PRK15182 238 AVLRAA 243 (425)
T ss_pred HHHHHh
Confidence 998887
No 80
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.03 E-value=9.1e-09 Score=98.45 Aligned_cols=177 Identities=14% Similarity=0.129 Sum_probs=122.6
Q ss_pred ChHHHHHHHHHCC----CceEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEE
Q 015610 1 MGSGIATALILSN----YPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVI 74 (403)
Q Consensus 1 MG~~iA~~la~~G----~~V~l~d~~~~-~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVi 74 (403)
||.+||..|+++| ++|+++|++++ .++.... +.|. +...+. +.+++||+||
T Consensus 14 mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----------~~g~-------------~~~~~~~e~~~~aDvVi 70 (279)
T PRK07679 14 IAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----------KYGV-------------KGTHNKKELLTDANILF 70 (279)
T ss_pred HHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----------hcCc-------------eEeCCHHHHHhcCCEEE
Confidence 8999999999998 89999999764 4443321 1131 223344 5578999999
Q ss_pred EecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCC-CCCeEEEecCCCCCHHHHHH
Q 015610 75 EAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH-VMPLLEIVRTNQTSPQVIVD 153 (403)
Q Consensus 75 eav~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~-~~~lvevv~~~~t~~e~~~~ 153 (403)
.||+.+. -.+++.++.+.++++++|.|..++++++.+.+.+.+..++++.|+..|.. ...+.-++++...+++.++.
T Consensus 71 lav~p~~--~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~ 148 (279)
T PRK07679 71 LAMKPKD--VAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISPSKHATAEHIQT 148 (279)
T ss_pred EEeCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHH
Confidence 9999664 33445778777888999999888999988888775545799999865543 34566677888888999999
Q ss_pred HHHHHHHcCCCcEEeccc--c---hhh--hhhhHHHHHHHHHH--HHHcCCCHHHHHHHH
Q 015610 154 LLDIGKKIKKTPIVVGNC--T---GFA--VNRMFFPYTQAAFL--LVERGTDLYLIDRAI 204 (403)
Q Consensus 154 ~~~l~~~lGk~~v~~~d~--~---G~i--~nRi~~~~~~Ea~~--l~~~G~~~~~iD~a~ 204 (403)
++++++.+|+..+ +.+. . |.. ... +...+.|++. ....|+++++..+++
T Consensus 149 v~~l~~~~G~~~~-v~e~~~~~~~a~~Gsgpa-~~~~~~eal~e~~~~~Gl~~~~a~~~~ 206 (279)
T PRK07679 149 AKALFETIGLVSV-VEEEDMHAVTALSGSGPA-YIYYVVEAMEKAAKKIGLKEDVAKSLI 206 (279)
T ss_pred HHHHHHhCCcEEE-eCHHHhhhHHHhhcCHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999998544 3211 0 000 001 1333445443 335699999998887
No 81
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.97 E-value=9.9e-09 Score=100.12 Aligned_cols=186 Identities=14% Similarity=0.083 Sum_probs=114.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH-HhhcCccccccc-cccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
||..||..|+++|++|++||++++.++...+ .+........ .....++.+++. +.+++||+||.|++
T Consensus 12 mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (325)
T PRK00094 12 WGTALAIVLARNGHDVTLWARDPEQAAEINA-----------DRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVP 80 (325)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-----------cCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCC
Confidence 7999999999999999999999988766532 1110000000 000123344555 46689999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHHhhcC--CCCcEEEEecC-CCCC------CC-CeEEEecCCC
Q 015610 79 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTY--SKDRIVGAHFF-SPAH------VM-PLLEIVRTNQ 145 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~---~la~~~~--~~~r~ig~hf~-~P~~------~~-~lvevv~~~~ 145 (403)
.. ....++.++.+.+++++++.+.++++.++ .+++.+. .+.. ....++ .|.. .. .++++ .+
T Consensus 81 ~~--~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~-~~~~~~~~P~~~~~~~~g~~~~~~~-~~-- 154 (325)
T PRK00094 81 SQ--ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDL-APIAVLSGPSFAKEVARGLPTAVVI-AS-- 154 (325)
T ss_pred HH--HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCC-CceEEEECccHHHHHHcCCCcEEEE-Ee--
Confidence 84 45677788888889999888776565542 2222221 0110 111222 3543 12 23333 33
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEecccch---------------------hhhhhhHHHH----HHHHHHHHHc-CCCHHH
Q 015610 146 TSPQVIVDLLDIGKKIKKTPIVVGNCTG---------------------FAVNRMFFPY----TQAAFLLVER-GTDLYL 199 (403)
Q Consensus 146 t~~e~~~~~~~l~~~lGk~~v~~~d~~G---------------------~i~nRi~~~~----~~Ea~~l~~~-G~~~~~ 199 (403)
.+.+.++++.++++..|..+....|..| .+.|+.+.++ ++|++.+.+. |++++.
T Consensus 155 ~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~ 234 (325)
T PRK00094 155 TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPET 234 (325)
T ss_pred CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence 3789999999999999987766655332 2344443333 6788877764 787777
Q ss_pred HHHH
Q 015610 200 IDRA 203 (403)
Q Consensus 200 iD~a 203 (403)
+..+
T Consensus 235 ~~~~ 238 (325)
T PRK00094 235 FLGL 238 (325)
T ss_pred hhcc
Confidence 7544
No 82
>PLN02256 arogenate dehydrogenase
Probab=98.96 E-value=8.3e-09 Score=99.66 Aligned_cols=142 Identities=11% Similarity=0.029 Sum_probs=100.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcccccccc-cc-CCCCeEEEecC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF-KDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~-~~aDlVieav~ 78 (403)
||+++|..|.+.|++|+++|+++.. +.+. +.|. ...++.+ .+ .+||+||.|+|
T Consensus 47 mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~gv-------------~~~~~~~e~~~~~aDvVilavp 101 (304)
T PLN02256 47 FGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELGV-------------SFFRDPDDFCEEHPDVVLLCTS 101 (304)
T ss_pred HHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcCC-------------eeeCCHHHHhhCCCCEEEEecC
Confidence 7999999999999999999998632 2221 2232 1223332 33 46999999999
Q ss_pred CChHHHHHHHHHH-HhhCCCCcEEEecCCC--CCHHHHHhhcCCCCcEEEEecCCCCCCC------CeEEEecC----CC
Q 015610 79 ENVSLKQQIFADL-EKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVM------PLLEIVRT----NQ 145 (403)
Q Consensus 79 e~~~~K~~~~~~l-~~~~~~~~ilasntSt--l~~~~la~~~~~~~r~ig~hf~~P~~~~------~lvevv~~----~~ 145 (403)
.. .-..++.++ ...++++++|++.+|+ .+++.+.+.+....+|+|.||+.++... .-+-+++. +.
T Consensus 102 ~~--~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~ 179 (304)
T PLN02256 102 IL--STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEG 179 (304)
T ss_pred HH--HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCC
Confidence 65 345666777 5668899999988873 4455565555444579999999877532 22222221 56
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEec
Q 015610 146 TSPQVIVDLLDIGKKIKKTPIVVG 169 (403)
Q Consensus 146 t~~e~~~~~~~l~~~lGk~~v~~~ 169 (403)
++++.++.++++++.+|.+++.+.
T Consensus 180 ~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 180 EREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEeC
Confidence 788999999999999999999883
No 83
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.96 E-value=5.6e-09 Score=102.96 Aligned_cols=129 Identities=12% Similarity=0.085 Sum_probs=95.0
Q ss_pred ChHHHHHHHHH-CCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecC
Q 015610 1 MGSGIATALIL-SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
||+++|..|.+ .|++|+.+|++.+ + ..+. +.+++||+||.|+|
T Consensus 16 iGgslA~alk~~~~~~V~g~D~~d~-------------------~----------------~~~~~~~v~~aDlVilavP 60 (370)
T PRK08818 16 YGRWLARFLRTRMQLEVIGHDPADP-------------------G----------------SLDPATLLQRADVLIFSAP 60 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCcc-------------------c----------------cCCHHHHhcCCCEEEEeCC
Confidence 89999999986 4999999998411 1 1122 45789999999999
Q ss_pred CChHHHHHHHHHHHhh---CCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCC-----CCCeEEEecCCCCCHHH
Q 015610 79 ENVSLKQQIFADLEKY---CPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH-----VMPLLEIVRTNQTSPQV 150 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~---~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~-----~~~lvevv~~~~t~~e~ 150 (403)
.+. -.+++.++.+. ++++|+|++.+|+ +..-+........+|+|.|||+.++ .+..+.++++ ..++.
T Consensus 61 v~~--~~~~l~~l~~~~~~l~~~~iVtDVgSv-K~~i~~~~~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~--~~~~~ 135 (370)
T PRK08818 61 IRH--TAALIEEYVALAGGRAAGQLWLDVTSI-KQAPVAAMLASQAEVVGLHPMTAPPKSPTLKGRVMVVCEA--RLQHW 135 (370)
T ss_pred HHH--HHHHHHHHhhhhcCCCCCeEEEECCCC-cHHHHHHHHhcCCCEEeeCCCCCCCCCcccCCCeEEEeCC--CchhH
Confidence 874 56677777765 7999999998876 5432222233334699999998664 2455667766 34566
Q ss_pred HHHHHHHHHHcCCCcEEec
Q 015610 151 IVDLLDIGKKIKKTPIVVG 169 (403)
Q Consensus 151 ~~~~~~l~~~lGk~~v~~~ 169 (403)
++.++.+++.+|..++.+.
T Consensus 136 ~~~v~~l~~~~Ga~v~~~~ 154 (370)
T PRK08818 136 SPWVQSLCSALQAECVYAT 154 (370)
T ss_pred HHHHHHHHHHcCCEEEEcC
Confidence 8889999999999998883
No 84
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.88 E-value=3e-07 Score=87.55 Aligned_cols=172 Identities=16% Similarity=0.145 Sum_probs=121.4
Q ss_pred ChHHHHHHHHHCCC----ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEE
Q 015610 1 MGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIE 75 (403)
Q Consensus 1 MG~~iA~~la~~G~----~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVie 75 (403)
||.+||..|.++|+ +|+++|+++++++.+.+ +.|. +..++. +.+.+||+||.
T Consensus 13 MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~----------~~g~-------------~~~~~~~e~~~~aDiIiL 69 (272)
T PRK12491 13 MGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASD----------KYGI-------------TITTNNNEVANSADILIL 69 (272)
T ss_pred HHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHH----------hcCc-------------EEeCCcHHHHhhCCEEEE
Confidence 89999999999886 69999999988766531 1231 123344 55789999999
Q ss_pred ecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCC-CCeEEEecCCCCCHHHHHHH
Q 015610 76 AIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-MPLLEIVRTNQTSPQVIVDL 154 (403)
Q Consensus 76 av~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~-~~lvevv~~~~t~~e~~~~~ 154 (403)
|++. . .-..++.++.+.++++++++|-..+++++.|.+.+..+.+++-+=|--|... ....-+..++..+++..+.+
T Consensus 70 avkP-~-~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v 147 (272)
T PRK12491 70 SIKP-D-LYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEV 147 (272)
T ss_pred EeCh-H-HHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCCCCHHHHHHH
Confidence 9994 3 4556668888888899999999999999999998864445554444335443 33444568888899999999
Q ss_pred HHHHHHcCCCcEEecc------------cchhhhhhhHHHHHHHHH--HHHHcCCCHHHHHHHH
Q 015610 155 LDIGKKIKKTPIVVGN------------CTGFAVNRMFFPYTQAAF--LLVERGTDLYLIDRAI 204 (403)
Q Consensus 155 ~~l~~~lGk~~v~~~d------------~~G~i~nRi~~~~~~Ea~--~l~~~G~~~~~iD~a~ 204 (403)
..++..+|+. +.+.+ +|+|+ .++.|++ ..++.|++.++..+..
T Consensus 148 ~~lf~~~G~~-~~~~E~~~d~~talsgsgPAf~------~~~~eal~~a~v~~Gl~~~~A~~l~ 204 (272)
T PRK12491 148 LNIFNIFGQT-EVVNEKLMDVVTSISGSSPAYV------YMFIEAMADAAVLGGMPRKQAYKFA 204 (272)
T ss_pred HHHHHcCCCE-EEEcHHHhhhHHHhccCcHHHH------HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999986 44432 12222 2234443 2345688888877776
No 85
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.86 E-value=3.6e-08 Score=106.79 Aligned_cols=144 Identities=17% Similarity=0.204 Sum_probs=109.5
Q ss_pred ChHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEec
Q 015610 1 MGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAI 77 (403)
Q Consensus 1 MG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav 77 (403)
||.++|..++++| ++|+++|++++.++.+. +.|... ...++. +++.+||+||.|+
T Consensus 14 mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~~aDvVilav 71 (735)
T PRK14806 14 IGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAEAVSGADVIVLAV 71 (735)
T ss_pred HHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHHHhcCCCEEEECC
Confidence 7999999999999 48999999998876653 344321 112333 5578999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCCcEEEecCCCCC---HHHHHhhcC-CCCcEEEEecCCCCC------------CCCeEEEe
Q 015610 78 IENVSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTY-SKDRIVGAHFFSPAH------------VMPLLEIV 141 (403)
Q Consensus 78 ~e~~~~K~~~~~~l~~~~~~~~ilasntStl~---~~~la~~~~-~~~r~ig~hf~~P~~------------~~~lvevv 141 (403)
|.. ....+++++.+.++++++|++.+|+ + ++.+.+.+. .+.||++.||+.... ..+.+.++
T Consensus 72 p~~--~~~~vl~~l~~~~~~~~ii~d~~sv-k~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~ 148 (735)
T PRK14806 72 PVL--AMEKVLADLKPLLSEHAIVTDVGST-KGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILT 148 (735)
T ss_pred CHH--HHHHHHHHHHHhcCCCcEEEEcCCC-chHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEE
Confidence 975 4678888888888999998765544 4 445555543 356899999986332 24567889
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCcEEec
Q 015610 142 RTNQTSPQVIVDLLDIGKKIKKTPIVVG 169 (403)
Q Consensus 142 ~~~~t~~e~~~~~~~l~~~lGk~~v~~~ 169 (403)
++..++++.++.+.++++.+|+.++++.
T Consensus 149 ~~~~~~~~~~~~~~~l~~~~G~~~~~~~ 176 (735)
T PRK14806 149 PLAETDPAALARVDRLWRAVGADVLHMD 176 (735)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 9888999999999999999999888884
No 86
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.82 E-value=3.4e-07 Score=90.05 Aligned_cols=155 Identities=11% Similarity=0.058 Sum_probs=97.2
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CC---HHHHHHhhcCccccccccccCCCCeEEEe
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MT---QEKFEKTISLLTGVLDYESFKDVDMVIEA 76 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~-~~---~~~~~~~~~~i~~~~~~~~~~~aDlViea 76 (403)
||..+|..|+++||+|+++|+++. .+... +.|. ++ ..+......+++.+++.+++.++|+||.|
T Consensus 13 mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~ 80 (341)
T PRK08229 13 IGCYLGGRLAAAGADVTLIGRARI-GDELR-----------AHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVT 80 (341)
T ss_pred HHHHHHHHHHhcCCcEEEEecHHH-HHHHH-----------hcCceeecCCCcceecccceeEeccChhhccCCCEEEEE
Confidence 799999999999999999999653 22221 1221 00 00000111234445566778899999999
Q ss_pred cCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH-HHHhhcCCCCcEEEEecCC-----CCC--CCCeEEEecCCCCCH
Q 015610 77 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVGAHFFS-----PAH--VMPLLEIVRTNQTSP 148 (403)
Q Consensus 77 v~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~-~la~~~~~~~r~ig~hf~~-----P~~--~~~lvevv~~~~t~~ 148 (403)
++... ...++.++.+.++++++|++.++++... .+.+.+.....+.|.+++. |-. ....-.+.-+. .
T Consensus 81 vk~~~--~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~~~~---~ 155 (341)
T PRK08229 81 VKSAA--TADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALAIEA---S 155 (341)
T ss_pred ecCcc--hHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceEecC---C
Confidence 98764 4677888999999999998877777654 5655554333344545432 211 00011122221 2
Q ss_pred HHHHHHHHHHHHcCCCcEEecccc
Q 015610 149 QVIVDLLDIGKKIKKTPIVVGNCT 172 (403)
Q Consensus 149 e~~~~~~~l~~~lGk~~v~~~d~~ 172 (403)
+.++++.++++..|..+.+.+|.-
T Consensus 156 ~~~~~~~~~l~~~g~~~~~~~di~ 179 (341)
T PRK08229 156 PALRPFAAAFARAGLPLVTHEDMR 179 (341)
T ss_pred chHHHHHHHHHhcCCCceecchhH
Confidence 456888999999998888888753
No 87
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.80 E-value=1.5e-07 Score=91.36 Aligned_cols=130 Identities=15% Similarity=0.025 Sum_probs=98.0
Q ss_pred CCCccccCccccccCCCC-------CCCCChhHHHHHHHHhhccCccCCcc-cccc---chHHHHHHHHHHHHHHHHHHH
Q 015610 253 KRAGETTRKGFYLYDERR-------KASPDPEVKKFIEKARSMSGVAIDPK-FAKL---SEKDIVEMIFFPVVNEACRVF 321 (403)
Q Consensus 253 G~~G~k~g~GFy~y~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~i~~r~~~~~~~ea~~~l 321 (403)
.+.++.-+.+|++..... ....++++.+.+...- ...|+ +..+ ..++++||++.++++||+.++
T Consensus 131 ~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~~~~~~~~~~~-----~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~ 205 (308)
T PRK06129 131 AGRERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALY-----RAAGQSPVRLRREIDGFVLNRLQGALLREAFRLV 205 (308)
T ss_pred CCcccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHH-----HHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHH
Confidence 456778888888754321 1235666554443321 12233 3333 358999999999999999999
Q ss_pred hcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHh---CHHHHHHHHHHHHHHhCC-CCCccHHHHHHHHC
Q 015610 322 AEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSL---GSKYIYSRLEEWSSLYGE-FFKPCAFLAERAGK 388 (403)
Q Consensus 322 ~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~---G~~~~~~~~~~~~~~~g~-~~~p~~~l~~~~~~ 388 (403)
++|++ |+++||.++..|+|++...-|||.++|.. |++.+......++...++ .+.|+|+++++++.
T Consensus 206 ~~g~~-~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~ 275 (308)
T PRK06129 206 ADGVA-SVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVAR 275 (308)
T ss_pred HcCCC-CHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHH
Confidence 99999 89999999999999973334999999987 899999999888888776 88899999888763
No 88
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.78 E-value=1e-08 Score=99.08 Aligned_cols=114 Identities=19% Similarity=0.340 Sum_probs=80.3
Q ss_pred ChHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEec--
Q 015610 1 MGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAI-- 77 (403)
Q Consensus 1 MG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav-- 77 (403)
||.++|..++..|+ +|+++|++++.+ ++... .+.... .......+++.+.+++++++||+||+++
T Consensus 9 vG~~ia~~la~~~l~eV~L~Di~e~~~-~g~~~---dl~~~~--------~~~~~~~~I~~t~d~~~l~dADiVIit~g~ 76 (300)
T cd01339 9 VGATLAQLLALKELGDVVLLDIVEGLP-QGKAL---DISQAA--------PILGSDTKVTGTNDYEDIAGSDVVVITAGI 76 (300)
T ss_pred HHHHHHHHHHhCCCcEEEEEeCCCcHH-HHHHH---HHHHhh--------hhcCCCeEEEEcCCHHHhCCCCEEEEecCC
Confidence 79999999999887 999999998754 33221 011100 1111123566666788899999999866
Q ss_pred ------------CCChHHHHHHHHHHHhhCCCCcE-EEecCCCCCHHHHHhhcCC-CCcEEEE
Q 015610 78 ------------IENVSLKQQIFADLEKYCPPHCI-LASNTSTIDLNLIGERTYS-KDRIVGA 126 (403)
Q Consensus 78 ------------~e~~~~K~~~~~~l~~~~~~~~i-lasntStl~~~~la~~~~~-~~r~ig~ 126 (403)
+++.++++++++++.+.++++.+ ++||.+.+....+.+.... |+|++|+
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence 78999999999999999988774 5577776555555555544 4577775
No 89
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.78 E-value=6.1e-08 Score=94.93 Aligned_cols=183 Identities=14% Similarity=0.079 Sum_probs=108.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||..||..|+++||+|++|+++++..+...+. ...... . .|. ....++..++++ +++++||+||.|+|.
T Consensus 15 mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~-~~~~~~-~-~g~-------~~~~~~~~~~~~~e~~~~aD~Vi~~v~~ 84 (328)
T PRK14618 15 WGTALAVLAASKGVPVRLWARRPEFAAALAAE-RENREY-L-PGV-------ALPAELYPTADPEEALAGADFAVVAVPS 84 (328)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh-Cccccc-C-CCC-------cCCCCeEEeCCHHHHHcCCCEEEEECch
Confidence 89999999999999999999999877655321 000000 0 010 001123345555 557899999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCCCC-----HHHHHhhcCC-CCcEEEEecC-CCCC------CCCeEEEecCCCC
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTSTID-----LNLIGERTYS-KDRIVGAHFF-SPAH------VMPLLEIVRTNQT 146 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntStl~-----~~~la~~~~~-~~r~ig~hf~-~P~~------~~~lvevv~~~~t 146 (403)
.. + .++.+.+++++++.+.+.++. ...+++.+.. ..+ +..++ .|.. ..+.+.++.+ .
T Consensus 85 ~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~--~~~~~~gP~~a~~~~~~~~~~~~~~~--~ 154 (328)
T PRK14618 85 KA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQA--RVAVLSGPNHAEEIARFLPAATVVAS--P 154 (328)
T ss_pred HH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCC--CeEEEECccHHHHHHcCCCeEEEEEe--C
Confidence 84 3 333355678888776665554 3355554421 001 12233 2332 2234445555 4
Q ss_pred CHHHHHHHHHHHHHcCCCcEEecccch---------------------hhhhhhHHH----HHHHHHHHHHc-CCCHHHH
Q 015610 147 SPQVIVDLLDIGKKIKKTPIVVGNCTG---------------------FAVNRMFFP----YTQAAFLLVER-GTDLYLI 200 (403)
Q Consensus 147 ~~e~~~~~~~l~~~lGk~~v~~~d~~G---------------------~i~nRi~~~----~~~Ea~~l~~~-G~~~~~i 200 (403)
+++.+++++++++..|..+....|.-| .+.|++..+ .++|++.+.+. |++++.+
T Consensus 155 ~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~ 234 (328)
T PRK14618 155 EPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATF 234 (328)
T ss_pred CHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccch
Confidence 889999999999999987765333221 133344332 25777777654 7766666
Q ss_pred HHH
Q 015610 201 DRA 203 (403)
Q Consensus 201 D~a 203 (403)
..+
T Consensus 235 ~~~ 237 (328)
T PRK14618 235 YGL 237 (328)
T ss_pred hcC
Confidence 444
No 90
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.71 E-value=2.7e-07 Score=89.63 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=84.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||.+||..|+.+||+|++||+++. .++ +++++||+||.|+|.
T Consensus 15 ~G~~lA~~l~~~G~~V~~~~r~~~-------------------------------------~~~~~~~~~advvi~~vp~ 57 (308)
T PRK14619 15 WGSTLAGLASANGHRVRVWSRRSG-------------------------------------LSLAAVLADADVIVSAVSM 57 (308)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCC-------------------------------------CCHHHHHhcCCEEEEECCh
Confidence 799999999999999999999863 011 346789999999998
Q ss_pred ChHHHHHHHHHHHhh-CCCCcEEEecCCCCCHH------HHHh-hcCCCCcEEEEecCCCCC------CCCeEEEecCCC
Q 015610 80 NVSLKQQIFADLEKY-CPPHCILASNTSTIDLN------LIGE-RTYSKDRIVGAHFFSPAH------VMPLLEIVRTNQ 145 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~-~~~~~ilasntStl~~~------~la~-~~~~~~r~ig~hf~~P~~------~~~lvevv~~~~ 145 (403)
+ ..+.++.++... +++++++.+.|.++++. ++.. .+.. .+++ .+..|.. ..+..-++.+
T Consensus 58 ~--~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~-~~v~--~i~gp~~a~ei~~~~~~~~~~ag-- 130 (308)
T PRK14619 58 K--GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPN-HPVV--VLSGPNLSKEIQQGLPAATVVAS-- 130 (308)
T ss_pred H--HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCC-CceE--EEECCCcHHHHhcCCCeEEEEEe--
Confidence 4 455666778664 78899998876545543 2221 1111 1222 1112321 1233334444
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEeccc
Q 015610 146 TSPQVIVDLLDIGKKIKKTPIVVGNC 171 (403)
Q Consensus 146 t~~e~~~~~~~l~~~lGk~~v~~~d~ 171 (403)
.+.+..+.+++++...|..+....|.
T Consensus 131 ~~~~~~~~v~~ll~~~~~~~~~~~d~ 156 (308)
T PRK14619 131 RDLAAAETVQQIFSSERFRVYTNSDP 156 (308)
T ss_pred CCHHHHHHHHHHhCCCcEEEEecCCc
Confidence 37899999999999999888866663
No 91
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.67 E-value=1.7e-08 Score=98.26 Aligned_cols=115 Identities=22% Similarity=0.385 Sum_probs=84.7
Q ss_pred ChHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEec--
Q 015610 1 MGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAI-- 77 (403)
Q Consensus 1 MG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav-- 77 (403)
||.++|..++..|+ +|+|+|++++.+. +. .++..... .......+++.+++++++++||+||+++
T Consensus 17 vG~~ia~~la~~gl~~i~LvDi~~~~~~-~~-----~ld~~~~~------~~~~~~~~I~~~~d~~~l~~aDiVI~tag~ 84 (321)
T PTZ00082 17 IGGVMAYLIVLKNLGDVVLFDIVKNIPQ-GK-----ALDISHSN------VIAGSNSKVIGTNNYEDIAGSDVVIVTAGL 84 (321)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCchhh-HH-----HHHHHhhh------hccCCCeEEEECCCHHHhCCCCEEEECCCC
Confidence 69999999999996 9999999998742 21 12211110 1111123566667889999999999955
Q ss_pred -----------------CCChHHHHHHHHHHHhhCCCC-cEEEecCCCCCHHHHHhhcCCC-CcEEEEe
Q 015610 78 -----------------IENVSLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH 127 (403)
Q Consensus 78 -----------------~e~~~~K~~~~~~l~~~~~~~-~ilasntStl~~~~la~~~~~~-~r~ig~h 127 (403)
.++..+++++..++.+.+++. .|++||++.+....+......| +|++|++
T Consensus 85 ~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 85 TKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 778899999999999999774 6667998887776776666665 7888877
No 92
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.65 E-value=1.2e-06 Score=85.03 Aligned_cols=177 Identities=14% Similarity=0.051 Sum_probs=115.5
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||.++|..|..+|++|++++++.++..... .+.|. +..+..++++.||+|+.++|..
T Consensus 28 mG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----------~~~G~-------------~~~s~~eaa~~ADVVvLaVPd~ 84 (330)
T PRK05479 28 QGHAHALNLRDSGVDVVVGLREGSKSWKKA----------EADGF-------------EVLTVAEAAKWADVIMILLPDE 84 (330)
T ss_pred HHHHHHHHHHHCCCEEEEEECCchhhHHHH----------HHCCC-------------eeCCHHHHHhcCCEEEEcCCHH
Confidence 799999999999999999888754432211 12232 1222236788999999999976
Q ss_pred hHHHHHHH-HHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCC--------CCeEEEe-cCCCCCHHH
Q 015610 81 VSLKQQIF-ADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV--------MPLLEIV-RTNQTSPQV 150 (403)
Q Consensus 81 ~~~K~~~~-~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~--------~~lvevv-~~~~t~~e~ 150 (403)
.. ..++ .++.+.++++++| +-++++++..+........+++-+.|-.|.+. ....-++ .+...+.+.
T Consensus 85 ~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a 161 (330)
T PRK05479 85 VQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNA 161 (330)
T ss_pred HH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHH
Confidence 54 5666 7798899999999 66788888766544433334555555556551 1222233 445567899
Q ss_pred HHHHHHHHHHcCCCcE-----Eecc-c--c--h--hhhhhhHHHHHHHHHHHH-HcCCCHHHHHHH
Q 015610 151 IVDLLDIGKKIKKTPI-----VVGN-C--T--G--FAVNRMFFPYTQAAFLLV-ERGTDLYLIDRA 203 (403)
Q Consensus 151 ~~~~~~l~~~lGk~~v-----~~~d-~--~--G--~i~nRi~~~~~~Ea~~l~-~~G~~~~~iD~a 203 (403)
.+.+..+++.+|..+. ..++ . + | -++-.-+..++..++..+ +.|++|+...--
T Consensus 162 ~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay~e 227 (330)
T PRK05479 162 KDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAYFE 227 (330)
T ss_pred HHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999998875 2332 1 1 1 133344455666776555 569988776433
No 93
>PRK07680 late competence protein ComER; Validated
Probab=98.63 E-value=2.1e-06 Score=81.88 Aligned_cols=173 Identities=13% Similarity=0.053 Sum_probs=111.9
Q ss_pred ChHHHHHHHHHCCC----ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEE
Q 015610 1 MGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIE 75 (403)
Q Consensus 1 MG~~iA~~la~~G~----~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVie 75 (403)
||..||..|.++|+ +|+++|++++..+...+ +... ++.+.+. +.+.+||+||.
T Consensus 11 mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~----------~~~g------------~~~~~~~~~~~~~aDiVil 68 (273)
T PRK07680 11 MGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKE----------RYPG------------IHVAKTIEEVISQSDLIFI 68 (273)
T ss_pred HHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHH----------HcCC------------eEEECCHHHHHHhCCEEEE
Confidence 79999999999994 79999999987655421 0001 2233444 45789999999
Q ss_pred ecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCC-CCCeEEEecCCCCCHHHHHHH
Q 015610 76 AIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH-VMPLLEIVRTNQTSPQVIVDL 154 (403)
Q Consensus 76 av~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~-~~~lvevv~~~~t~~e~~~~~ 154 (403)
|++... -..+++++.+.++++++|.|.+++++++.|.+.+.. +.+-+++--|.. .....-++.+...+++..+.+
T Consensus 69 av~p~~--~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~~--~~~r~~p~~~~~~~~G~t~~~~g~~~~~~~~~~~ 144 (273)
T PRK07680 69 CVKPLD--IYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVPC--QVARIIPSITNRALSGASLFTFGSRCSEEDQQKL 144 (273)
T ss_pred ecCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC--CEEEECCChHHHHhhccEEEeeCCCCCHHHHHHH
Confidence 997433 455667788888888899888888998888877642 333333321211 122334456666788899999
Q ss_pred HHHHHHcCCCcEEeccc------------chhhhhhhHHHHHHHHHHHHH-cCCCHHHHHHHH
Q 015610 155 LDIGKKIKKTPIVVGNC------------TGFAVNRMFFPYTQAAFLLVE-RGTDLYLIDRAI 204 (403)
Q Consensus 155 ~~l~~~lGk~~v~~~d~------------~G~i~nRi~~~~~~Ea~~l~~-~G~~~~~iD~a~ 204 (403)
.+++..+|. ++.+.+. |.| +-.++.+++..+ ++ .|+++++..+++
T Consensus 145 ~~ll~~~G~-~~~i~e~~~~~~~~l~gs~pa~-~~~~~~al~~~~---~~~~Gl~~~~a~~~~ 202 (273)
T PRK07680 145 ERLFSNIST-PLVIEEDITRVSSDIVSCGPAF-FSYLLQRFIDAA---VEETNISKEEATTLA 202 (273)
T ss_pred HHHHHcCCC-EEEEChHhcchhhhhccchHHH-HHHHHHHHHHHH---HHhcCCCHHHHHHHH
Confidence 999999995 5555321 112 222333333333 34 588888877666
No 94
>PLN02712 arogenate dehydrogenase
Probab=98.59 E-value=5.3e-07 Score=95.90 Aligned_cols=142 Identities=11% Similarity=0.055 Sum_probs=95.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccc-cC-CCCeEEEecC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK-DVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~-~aDlVieav~ 78 (403)
||+++|..|...|++|++||++.+. +.+ .+.|. ....+.++ +. +||+||.|+|
T Consensus 380 mG~slA~~L~~~G~~V~~~dr~~~~-~~a-----------~~~Gv-------------~~~~~~~el~~~~aDvVILavP 434 (667)
T PLN02712 380 FGQFLAKTMVKQGHTVLAYSRSDYS-DEA-----------QKLGV-------------SYFSDADDLCEEHPEVILLCTS 434 (667)
T ss_pred HHHHHHHHHHHCcCEEEEEECChHH-HHH-----------HHcCC-------------eEeCCHHHHHhcCCCEEEECCC
Confidence 7999999999999999999998643 222 12342 12334432 43 5899999999
Q ss_pred CChHHHHHHHHHHHh-hCCCCcEEEecCCC--CCHHHHHhhcCCCCcEEEEecCCCCCCC--C---eE-----EEecCCC
Q 015610 79 ENVSLKQQIFADLEK-YCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVM--P---LL-----EIVRTNQ 145 (403)
Q Consensus 79 e~~~~K~~~~~~l~~-~~~~~~ilasntSt--l~~~~la~~~~~~~r~ig~hf~~P~~~~--~---lv-----evv~~~~ 145 (403)
.. .-..++.++.. .+++++||++.+|+ .++..+.+.+....+|++.||+.++... . +- -++.++.
T Consensus 435 ~~--~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~ 512 (667)
T PLN02712 435 IL--STEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDD 512 (667)
T ss_pred hH--HHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhhhccCcEeCCCc
Confidence 53 34555566653 57899999988776 3444444444444479999999866532 1 11 1223444
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEec
Q 015610 146 TSPQVIVDLLDIGKKIKKTPIVVG 169 (403)
Q Consensus 146 t~~e~~~~~~~l~~~lGk~~v~~~ 169 (403)
...+.++.+..+++.+|.+++.+.
T Consensus 513 ~~~~~~~~l~~l~~~lGa~vv~ms 536 (667)
T PLN02712 513 RRVSRCDSFLDIFAREGCRMVEMS 536 (667)
T ss_pred chHHHHHHHHHHHHHcCCEEEEeC
Confidence 455667777799999999998873
No 95
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.56 E-value=7.4e-08 Score=93.85 Aligned_cols=115 Identities=22% Similarity=0.343 Sum_probs=81.8
Q ss_pred ChHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEec--
Q 015610 1 MGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAI-- 77 (403)
Q Consensus 1 MG~~iA~~la~~G-~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav-- 77 (403)
||.++|..++..| .+|+|+|++++.++ +.. +|..... .......+++.+++++++++||+||+++
T Consensus 16 vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~-----lDl~~~~------~~~~~~~~i~~~~d~~~l~~ADiVVitag~ 83 (319)
T PTZ00117 16 IGSTVALLILQKNLGDVVLYDVIKGVPQ-GKA-----LDLKHFS------TLVGSNINILGTNNYEDIKDSDVVVITAGV 83 (319)
T ss_pred HHHHHHHHHHHCCCCeEEEEECCCccch-hHH-----HHHhhhc------cccCCCeEEEeCCCHHHhCCCCEEEECCCC
Confidence 6899999999999 69999999988754 321 1110000 0011113555567888999999999999
Q ss_pred CCCh------------HHHHHHHHHHHhhCCCC-cEEEecCCCCCHHHHHhhcCCC-CcEEEEe
Q 015610 78 IENV------------SLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH 127 (403)
Q Consensus 78 ~e~~------------~~K~~~~~~l~~~~~~~-~ilasntStl~~~~la~~~~~~-~r~ig~h 127 (403)
++.. .+++++..++.+++++. .|++||.+.+....+.+....| +|++|++
T Consensus 84 ~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 84 QRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 7776 88999999999998777 5666888776665555555555 6888876
No 96
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.55 E-value=3.6e-06 Score=79.59 Aligned_cols=170 Identities=13% Similarity=0.038 Sum_probs=108.9
Q ss_pred ChHHHHHHHHHCCCc---eEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEe
Q 015610 1 MGSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEA 76 (403)
Q Consensus 1 MG~~iA~~la~~G~~---V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViea 76 (403)
||.+|+..|.++|+. +.++|++++..++..+ ..+. .+...+. +.+++||+||.|
T Consensus 11 mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~----------~~~~------------~~~~~~~~~~~~~aDvVila 68 (258)
T PRK06476 11 ITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAE----------RFPK------------VRIAKDNQAVVDRSDVVFLA 68 (258)
T ss_pred HHHHHHHHHHhCCCChheEEEECCCHHHHHHHHH----------HcCC------------ceEeCCHHHHHHhCCEEEEE
Confidence 799999999999875 5789999888665421 1111 1223344 456889999999
Q ss_pred cCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCC-CeEEEecCCCCCHHHHHHHH
Q 015610 77 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVM-PLLEIVRTNQTSPQVIVDLL 155 (403)
Q Consensus 77 v~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~-~lvevv~~~~t~~e~~~~~~ 155 (403)
++ +..+ ..++.++ . ..++.++.|..++++++.|.+.+....+.+-.++..|.... ...-++++ .+.++
T Consensus 69 v~-p~~~-~~vl~~l-~-~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~-------~~~~~ 137 (258)
T PRK06476 69 VR-PQIA-EEVLRAL-R-FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP-------DPFVA 137 (258)
T ss_pred eC-HHHH-HHHHHHh-c-cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC-------HHHHH
Confidence 99 3334 5555555 2 46778888878889999998887654456666766555422 22333333 25788
Q ss_pred HHHHHcCCCcEEecc--cchh-----hhhhhHHHHHHHHHHHH-HcCCCHHHHHHHH
Q 015610 156 DIGKKIKKTPIVVGN--CTGF-----AVNRMFFPYTQAAFLLV-ERGTDLYLIDRAI 204 (403)
Q Consensus 156 ~l~~~lGk~~v~~~d--~~G~-----i~nRi~~~~~~Ea~~l~-~~G~~~~~iD~a~ 204 (403)
++++.+|..+.+..+ ..-+ ....++ .++.++..+. +.|+++++..+++
T Consensus 138 ~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~~~-~~~~~~~~~~~~~Gl~~~~a~~~~ 193 (258)
T PRK06476 138 ALFDALGTAVECDSEEEYDLLAAASALMATYF-GILETATGWLEEQGLKRQKARAYL 193 (258)
T ss_pred HHHHhcCCcEEECChHhccceeehhccHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999987764322 1111 112222 3456666555 4599998887776
No 97
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.55 E-value=6.9e-06 Score=79.98 Aligned_cols=190 Identities=16% Similarity=0.185 Sum_probs=122.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCe
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGR--------VRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDM 72 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 72 (403)
+|.+.|..+|++|++|+.+|+++.+++..-.. +...+...++. ++++.+++.+.++.||+
T Consensus 20 VGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~------------g~lraTtd~~~l~~~dv 87 (436)
T COG0677 20 VGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVES------------GKLRATTDPEELKECDV 87 (436)
T ss_pred ccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhc------------CCceEecChhhcccCCE
Confidence 68999999999999999999999998775210 11112233333 35678999999999999
Q ss_pred EEEecCCChHH--------HHHHHHHHHhhCCCCcEEEecCCCCC--HHHHHhhcC--CCCcEEEEecC---CCCC---C
Q 015610 73 VIEAIIENVSL--------KQQIFADLEKYCPPHCILASNTSTID--LNLIGERTY--SKDRIVGAHFF---SPAH---V 134 (403)
Q Consensus 73 Vieav~e~~~~--------K~~~~~~l~~~~~~~~ilasntStl~--~~~la~~~~--~~~r~ig~hf~---~P~~---~ 134 (403)
+|-|||..+.- -...-+.|.+.++++.++.--|++.+ .++++..+. .+.-..|..|+ +|-+ +
T Consensus 88 ~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~PG 167 (436)
T COG0677 88 FIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPG 167 (436)
T ss_pred EEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccccCCC
Confidence 99999986532 22333458889999988874333333 224443321 11111222232 3443 2
Q ss_pred CCeEE------EecCCCCCHHHHHHHHHHHHHcCCCcEEeccc--c--hhhhhhhH----HHHHHHHHHHHHc-CCCHHH
Q 015610 135 MPLLE------IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC--T--GFAVNRMF----FPYTQAAFLLVER-GTDLYL 199 (403)
Q Consensus 135 ~~lve------vv~~~~t~~e~~~~~~~l~~~lGk~~v~~~d~--~--G~i~nRi~----~~~~~Ea~~l~~~-G~~~~~ 199 (403)
..+.| |+.| .+|+..+.+..|.+..=+..+.+.+. . -++..+++ .++.||...+.++ |++..+
T Consensus 168 ~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwe 245 (436)
T COG0677 168 NVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWE 245 (436)
T ss_pred chhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHH
Confidence 23333 5555 58899999999999876666666542 1 24555554 5568998777765 998877
Q ss_pred HHHHH
Q 015610 200 IDRAI 204 (403)
Q Consensus 200 iD~a~ 204 (403)
+-++.
T Consensus 246 vIeaA 250 (436)
T COG0677 246 VIEAA 250 (436)
T ss_pred HHHHh
Confidence 76666
No 98
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.44 E-value=9.2e-06 Score=79.36 Aligned_cols=191 Identities=16% Similarity=0.194 Sum_probs=119.5
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEe
Q 015610 2 GSGIATALILSNYPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEA 76 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViea 76 (403)
|...|..|+..||+|+.+|+++++++...+.+ +..|+.+++++..+ .|+++++|+ ++++++|++|.|
T Consensus 12 GLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~--------gRl~fTtd~~~a~~~adv~fIa 83 (414)
T COG1004 12 GLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLAS--------GRLRFTTDYEEAVKDADVVFIA 83 (414)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcccc--------CcEEEEcCHHHHHhcCCEEEEE
Confidence 67788999999999999999999998775332 23444555444321 368899999 578999999999
Q ss_pred cCCChH--------HHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHHhhcC--CCCcEEEEecCCCCC----------
Q 015610 77 IIENVS--------LKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTY--SKDRIVGAHFFSPAH---------- 133 (403)
Q Consensus 77 v~e~~~--------~K~~~~~~l~~~~~~~~ilasntStl~~~---~la~~~~--~~~r~ig~hf~~P~~---------- 133 (403)
|+.+.. .-..+.++|.++++..+++. +-||.|+. ++.+.+. .+.+-.++ -+||-.
T Consensus 84 vgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v-~~NPEFLREG~Av~D~ 161 (414)
T COG1004 84 VGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEV-ASNPEFLREGSAVYDF 161 (414)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceE-ecChHHhcCcchhhhc
Confidence 998653 22334456888888877776 46787765 3333221 11110011 024542
Q ss_pred CCCeEEEecCCCCCHHHHHHHHHHHHHc--CCCcEEeccc--ch--hhhhhhHHHH----HHHHHHHHHc-CCCHHHHHH
Q 015610 134 VMPLLEIVRTNQTSPQVIVDLLDIGKKI--KKTPIVVGNC--TG--FAVNRMFFPY----TQAAFLLVER-GTDLYLIDR 202 (403)
Q Consensus 134 ~~~lvevv~~~~t~~e~~~~~~~l~~~l--Gk~~v~~~d~--~G--~i~nRi~~~~----~~Ea~~l~~~-G~~~~~iD~ 202 (403)
..|--.|+... ++++.+.+.++++.. ...|+...+. .. +.+++.+.+. +||...+.+. |++..+|-.
T Consensus 162 ~~PdRIViG~~--~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V~~ 239 (414)
T COG1004 162 LYPDRIVIGVR--SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKVGADVKQVAE 239 (414)
T ss_pred cCCCeEEEccC--ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 12333344442 334555555555443 5566665443 22 3455555443 8999988876 999999877
Q ss_pred HH
Q 015610 203 AI 204 (403)
Q Consensus 203 a~ 204 (403)
++
T Consensus 240 gI 241 (414)
T COG1004 240 GI 241 (414)
T ss_pred Hc
Confidence 76
No 99
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.43 E-value=5.8e-06 Score=84.50 Aligned_cols=194 Identities=14% Similarity=0.168 Sum_probs=119.2
Q ss_pred ChHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeE
Q 015610 1 MGSGIATALILS--NYPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMV 73 (403)
Q Consensus 1 MG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlV 73 (403)
+|..+|..||.+ |++|+++|++++.++...+.. +..++.++.++ .-.++++++++ +++++||++
T Consensus 12 vGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~---------~~~~l~~t~~~~~~i~~advi 82 (473)
T PLN02353 12 VGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQC---------RGKNLFFSTDVEKHVAEADIV 82 (473)
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHh---------hcCCEEEEcCHHHHHhcCCEE
Confidence 588999999988 578999999999988764211 11122221111 11247788887 578999999
Q ss_pred EEecCCCh-------------HHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHHhhcCCCCcEEEEec-CCCCCCC-
Q 015610 74 IEAIIENV-------------SLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHF-FSPAHVM- 135 (403)
Q Consensus 74 ieav~e~~-------------~~K~~~~~~l~~~~~~~~ilasntStl~~~---~la~~~~~~~r~ig~hf-~~P~~~~- 135 (403)
|-|||-.. .--....++|.+.++++++|.- .||.++. ++...+....+=...|. ++|-...
T Consensus 83 ~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~-~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PErl~~ 161 (473)
T PLN02353 83 FVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAE 161 (473)
T ss_pred EEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEE-eCCCCCChHHHHHHHHHhhCCCCCeEEEECCCccCC
Confidence 99997443 2334555678888999998873 5565644 44433321100011222 2565421
Q ss_pred ---------CeEEEecCCC--CCHHHHHHHHHHHHHcCC-CcEEecc--c--chhhhhhhHH----HHHHHHHHHHHc-C
Q 015610 136 ---------PLLEIVRTNQ--TSPQVIVDLLDIGKKIKK-TPIVVGN--C--TGFAVNRMFF----PYTQAAFLLVER-G 194 (403)
Q Consensus 136 ---------~lvevv~~~~--t~~e~~~~~~~l~~~lGk-~~v~~~d--~--~G~i~nRi~~----~~~~Ea~~l~~~-G 194 (403)
+--.|+.+.. ++++..+.+.++++.+-+ .++.+.+ + -.+++.+.+. +++||...+.+. |
T Consensus 162 G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~g 241 (473)
T PLN02353 162 GTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241 (473)
T ss_pred CCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2122345431 225678888888887643 4555533 2 2356666653 458999888876 9
Q ss_pred CCHHHHHHHH
Q 015610 195 TDLYLIDRAI 204 (403)
Q Consensus 195 ~~~~~iD~a~ 204 (403)
++..+|-+++
T Consensus 242 iD~~eV~~~~ 251 (473)
T PLN02353 242 ADVSQVSHAV 251 (473)
T ss_pred CCHHHHHHHh
Confidence 9999998888
No 100
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.41 E-value=1.3e-05 Score=77.79 Aligned_cols=192 Identities=13% Similarity=0.050 Sum_probs=122.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~-~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e 79 (403)
||.++|..|..+|++|++++.. ++.++++. +.|. +..+..+++++||+|+.++|.
T Consensus 14 mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~Gv-------------~~~s~~ea~~~ADiVvLaVpp 69 (314)
T TIGR00465 14 QGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDGF-------------KVGTVEEAIPQADLIMNLLPD 69 (314)
T ss_pred HHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCCC-------------EECCHHHHHhcCCEEEEeCCc
Confidence 7999999999999998876654 44444331 2332 122333567899999999997
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCC--------CCCeEEEe-cCCCCCHHH
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--------VMPLLEIV-RTNQTSPQV 150 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~--------~~~lvevv-~~~~t~~e~ 150 (403)
... ...+++++.+.++++.+| |-..++++..+...+....+++=+=|--|.+ +....-++ .+...+.+.
T Consensus 70 ~~~-~~~v~~ei~~~l~~g~iV-s~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~ 147 (314)
T TIGR00465 70 EVQ-HEVYEAEIQPLLKEGKTL-GFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEA 147 (314)
T ss_pred HhH-HHHHHHHHHhhCCCCcEE-EEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHH
Confidence 643 456667788888888766 5567889987766654333444444444665 23333454 677778899
Q ss_pred HHHHHHHHHHcCCC-------cE--Eec-ccch-h-hhhhhHHHH---HHHHHHHHHcCCCHHHHHHHH-HhcCCCchHH
Q 015610 151 IVDLLDIGKKIKKT-------PI--VVG-NCTG-F-AVNRMFFPY---TQAAFLLVERGTDLYLIDRAI-TKFGMPMGPF 214 (403)
Q Consensus 151 ~~~~~~l~~~lGk~-------~v--~~~-d~~G-~-i~nRi~~~~---~~Ea~~l~~~G~~~~~iD~a~-~~~g~~~GPf 214 (403)
.+.+..+++.+|.. .. .+. |--+ + .+.=..-++ .-|++ ++.|++++...... ..+ .|.-
T Consensus 148 ~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal--v~~G~~~e~A~~~~~~~~---~g~~ 222 (314)
T TIGR00465 148 MAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL--VEAGYQPELAYFETVHEL---KLIV 222 (314)
T ss_pred HHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH--HHcCCCHHHHHHHHHHHH---HHHH
Confidence 99999999999988 21 111 1000 0 111111222 22544 78899998887776 433 4666
Q ss_pred HHHHhhchH
Q 015610 215 RLADLVGFG 223 (403)
Q Consensus 215 ~~~D~~Gld 223 (403)
.++-..|..
T Consensus 223 ~l~~e~g~~ 231 (314)
T TIGR00465 223 DLIYEGGIT 231 (314)
T ss_pred HHHHHhcHH
Confidence 777666764
No 101
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.39 E-value=7.3e-06 Score=75.56 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=94.9
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||..+|..|+++|++|+++++++++++....... +.....|. . .++...+..++++++|+||.|+|..
T Consensus 12 mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~---~~~~~~g~-~--------~~~~~~~~~ea~~~aDvVilavp~~ 79 (219)
T TIGR01915 12 QGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKAL---EELGHGGS-D--------IKVTGADNAEAAKRADVVILAVPWD 79 (219)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHH---hhccccCC-C--------ceEEEeChHHHHhcCCEEEEECCHH
Confidence 7899999999999999999999988765432211 11111121 0 0122223346788999999999966
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCH-----------------HHHHhhcCCCCcEEEEecCCCCC-------CCC
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTSTIDL-----------------NLIGERTYSKDRIVGAHFFSPAH-------VMP 136 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntStl~~-----------------~~la~~~~~~~r~ig~hf~~P~~-------~~~ 136 (403)
. -..++.++...++. ++|.|.+-+++. +.+++.+....|++..-..-|.. ..+
T Consensus 80 ~--~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~~~~~~~~~~~ 156 (219)
T TIGR01915 80 H--VLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAVLLQDVDDEVD 156 (219)
T ss_pred H--HHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHHHhcCCCCCCC
Confidence 4 34555666655554 777776655554 33555554325666552221221 112
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHc-CCCcEEecc
Q 015610 137 LLEIVRTNQTSPQVIVDLLDIGKKI-KKTPIVVGN 170 (403)
Q Consensus 137 lvevv~~~~t~~e~~~~~~~l~~~l-Gk~~v~~~d 170 (403)
.-..+.|. +++..+.+..+.+.+ |..|+.++.
T Consensus 157 ~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 157 CDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred CCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence 22335553 677888999999999 999998864
No 102
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.39 E-value=3.9e-06 Score=76.84 Aligned_cols=146 Identities=16% Similarity=0.157 Sum_probs=102.1
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccc-cccccccCCCCeEEEecCCC
Q 015610 2 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~~~aDlVieav~e~ 80 (403)
|+.||..||.+||+|+|.|.|.+-.+.. .|++..+.|. +. .+|.++++.+++.+.-.|=-
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~------~w~~vedAGV-------------~vv~dD~eaa~~~Ei~VLFTPFG 93 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDE------HWKRVEDAGV-------------EVVSDDAEAAEHGEIHVLFTPFG 93 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHH------HHHHHHhcCc-------------EEecCchhhhhcceEEEEecccc
Confidence 7899999999999999999988776654 2444445563 23 44458899999999888865
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhh----cCCCCcEEEEecCCCCCC-----CCeEEEecC------CC
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER----TYSKDRIVGAHFFSPAHV-----MPLLEIVRT------NQ 145 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~----~~~~~r~ig~hf~~P~~~-----~~lvevv~~------~~ 145 (403)
. .--.+-++|.++++.+++|+ ||.|.|+-.|... ++.+.+-+|+-.|.|... .... ++.| .-
T Consensus 94 k-~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~y-viagr~t~g~el 170 (340)
T COG4007 94 K-ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHY-VIAGRSTEGKEL 170 (340)
T ss_pred h-hhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceE-EEeccCCCceee
Confidence 2 23345567899999999998 4555555444433 455556778766665531 1222 3333 22
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEec
Q 015610 146 TSPQVIVDLLDIGKKIKKTPIVVG 169 (403)
Q Consensus 146 t~~e~~~~~~~l~~~lGk~~v~~~ 169 (403)
.+++.++++..+++.+||.+.++.
T Consensus 171 ATeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 171 ATEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred ccHHHHHHHHHHHHhcCCceEecC
Confidence 468899999999999999998873
No 103
>PLN02712 arogenate dehydrogenase
Probab=98.39 E-value=5.5e-06 Score=88.19 Aligned_cols=141 Identities=12% Similarity=0.062 Sum_probs=92.2
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccc-c-CCCCeEEEecC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F-KDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~-~~aDlVieav~ 78 (403)
||+++|..|.++|++|+++|++... +.+. +.|. ....+.++ + .+||+||.|+|
T Consensus 63 mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~Gv-------------~~~~d~~e~~~~~aDvViLavP 117 (667)
T PLN02712 63 YGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SLGV-------------SFFLDPHDLCERHPDVILLCTS 117 (667)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------HcCC-------------EEeCCHHHHhhcCCCEEEEcCC
Confidence 7999999999999999999998543 2221 2342 12334432 3 56999999999
Q ss_pred CChHHHHHHHHHHH-hhCCCCcEEEecCCCCCHH---HHHhhcCCCCcEEEEecCCCCCC-----CCeEEEec-----CC
Q 015610 79 ENVSLKQQIFADLE-KYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFSPAHV-----MPLLEIVR-----TN 144 (403)
Q Consensus 79 e~~~~K~~~~~~l~-~~~~~~~ilasntStl~~~---~la~~~~~~~r~ig~hf~~P~~~-----~~lvevv~-----~~ 144 (403)
.+ .-..++.++. ..++++++|++.+|+ ... .+...+....+|+|.||++.+.. .....+.. .+
T Consensus 118 ~~--~~~~vl~~l~~~~l~~g~iVvDv~Sv-K~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~ 194 (667)
T PLN02712 118 II--STENVLKSLPLQRLKRNTLFVDVLSV-KEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNE 194 (667)
T ss_pred HH--HHHHHHHhhhhhcCCCCeEEEECCCC-cHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCc
Confidence 54 3456666664 568899999886654 432 23333333336999999985541 11122222 22
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEec
Q 015610 145 QTSPQVIVDLLDIGKKIKKTPIVVG 169 (403)
Q Consensus 145 ~t~~e~~~~~~~l~~~lGk~~v~~~ 169 (403)
....+.++.++++++.+|.+++.+.
T Consensus 195 ~~~~~~~~~l~~l~~~lGa~v~~ms 219 (667)
T PLN02712 195 ELRVSRCKSFLEVFEREGCKMVEMS 219 (667)
T ss_pred cccHHHHHHHHHHHHHcCCEEEEeC
Confidence 2334567788899999999999883
No 104
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.39 E-value=2.3e-05 Score=74.87 Aligned_cols=142 Identities=13% Similarity=0.038 Sum_probs=99.1
Q ss_pred ChHHHHHHHHHCC----CceEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEE
Q 015610 1 MGSGIATALILSN----YPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVI 74 (403)
Q Consensus 1 MG~~iA~~la~~G----~~V~l~d~~~~~-l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVi 74 (403)
||.+||..|.++| ++|++++++++. ++... . +.+. ...+.+. +.+.+||+||
T Consensus 12 mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~----~------~~~~------------~~~~~~~~e~~~~aDvVi 69 (277)
T PRK06928 12 MADMIATKLLETEVATPEEIILYSSSKNEHFNQLY----D------KYPT------------VELADNEAEIFTKCDHSF 69 (277)
T ss_pred HHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHH----H------HcCC------------eEEeCCHHHHHhhCCEEE
Confidence 7999999999998 799999987543 22211 0 0010 1223344 4578999999
Q ss_pred EecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCC-CCeEEEecCCCCCHHHHHH
Q 015610 75 EAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-MPLLEIVRTNQTSPQVIVD 153 (403)
Q Consensus 75 eav~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~-~~lvevv~~~~t~~e~~~~ 153 (403)
.|+|-.. -..++.++.+.++++++|.|.+.++++++|.+.+.. .+++-+=+.-|... ....-++.++..+++..+.
T Consensus 70 lavpp~~--~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~ 146 (277)
T PRK06928 70 ICVPPLA--VLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAHAETVNEANKSR 146 (277)
T ss_pred EecCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEecCCCCCHHHHHH
Confidence 9999443 446777887778888888888889999999887743 24444444334432 2344556777889999999
Q ss_pred HHHHHHHcCCCcEE
Q 015610 154 LLDIGKKIKKTPIV 167 (403)
Q Consensus 154 ~~~l~~~lGk~~v~ 167 (403)
++.++..+|+...+
T Consensus 147 v~~l~~~~G~~~~v 160 (277)
T PRK06928 147 LEETLSHFSHVMTI 160 (277)
T ss_pred HHHHHHhCCCEEEE
Confidence 99999999986644
No 105
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.39 E-value=6.9e-07 Score=86.68 Aligned_cols=95 Identities=21% Similarity=0.312 Sum_probs=65.3
Q ss_pred ChHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEec--
Q 015610 1 MGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAI-- 77 (403)
Q Consensus 1 MG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav-- 77 (403)
||.++|..++..|+ +|+++|++++.++.....+... .. ......+++.+++++++++||+||.++
T Consensus 13 vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~---~~---------~~~~~~~i~~~~d~~~~~~aDiVii~~~~ 80 (307)
T PRK06223 13 VGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEA---AP---------VEGFDTKITGTNDYEDIAGSDVVVITAGV 80 (307)
T ss_pred HHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhh---hh---------hcCCCcEEEeCCCHHHHCCCCEEEECCCC
Confidence 69999999999876 9999999988753221111111 00 011123566667788899999999886
Q ss_pred ------------CCChHHHHHHHHHHHhhCCCCcE-EEecCCC
Q 015610 78 ------------IENVSLKQQIFADLEKYCPPHCI-LASNTST 107 (403)
Q Consensus 78 ------------~e~~~~K~~~~~~l~~~~~~~~i-lasntSt 107 (403)
.++.++++++++++.+.+++..+ ++||.+.
T Consensus 81 p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d 123 (307)
T PRK06223 81 PRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVD 123 (307)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH
Confidence 46778999999999999866533 3354443
No 106
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.37 E-value=2.9e-05 Score=70.69 Aligned_cols=172 Identities=15% Similarity=0.165 Sum_probs=120.9
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc----cccCCCCeEEEe
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY----ESFKDVDMVIEA 76 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~~~~aDlViea 76 (403)
||..|+..|.+.||+|+.||+++++++.+. ..|.. .++++ +.+..--.|..+
T Consensus 11 MG~n~v~rl~~~ghdvV~yD~n~~av~~~~-----------~~ga~-------------~a~sl~el~~~L~~pr~vWlM 66 (300)
T COG1023 11 MGANLVRRLLDGGHDVVGYDVNQTAVEELK-----------DEGAT-------------GAASLDELVAKLSAPRIVWLM 66 (300)
T ss_pred hhHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------hcCCc-------------cccCHHHHHHhcCCCcEEEEE
Confidence 899999999999999999999999998874 44521 22222 334455678888
Q ss_pred cCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHHhhcCCCCcEEEEecCC-CCCCC------CeEEEecCCCCC
Q 015610 77 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFFS-PAHVM------PLLEIVRTNQTS 147 (403)
Q Consensus 77 v~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~--~la~~~~~~~r~ig~hf~~-P~~~~------~lvevv~~~~t~ 147 (403)
||-- ++-..++.++...+.++-||++..-|.--+ +-++.+.. .|+||+. ..+.+ ...-+|.| +
T Consensus 67 vPag-~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~----kgi~flD~GTSGG~~G~~~G~~lMiGG---~ 138 (300)
T COG1023 67 VPAG-DITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAE----KGIHFLDVGTSGGVWGAERGYCLMIGG---D 138 (300)
T ss_pred ccCC-CchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHh----cCCeEEeccCCCCchhhhcCceEEecC---c
Confidence 8865 256778889999999999999766553322 33333332 4999995 66642 45666777 8
Q ss_pred HHHHHHHHHHHHHcCCCc---EEecc-cchh----hhhhhH---HHHHHHHHHHHHcC---CCHHHHHHHH
Q 015610 148 PQVIVDLLDIGKKIKKTP---IVVGN-CTGF----AVNRMF---FPYTQAAFLLVERG---TDLYLIDRAI 204 (403)
Q Consensus 148 ~e~~~~~~~l~~~lGk~~---v~~~d-~~G~----i~nRi~---~~~~~Ea~~l~~~G---~~~~~iD~a~ 204 (403)
+++++++.++++.+.-.+ .+++. ..|. |-|-|= ...+.|.+.++++. ++.+++-+++
T Consensus 139 ~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW 209 (300)
T COG1023 139 EEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVW 209 (300)
T ss_pred HHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 999999999999876533 45654 3563 344442 33478999999864 3788888887
No 107
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.30 E-value=2.8e-05 Score=72.73 Aligned_cols=177 Identities=14% Similarity=0.135 Sum_probs=111.9
Q ss_pred ChHHHHHHHHHCCC---c-eEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEE
Q 015610 1 MGSGIATALILSNY---P-VILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVI 74 (403)
Q Consensus 1 MG~~iA~~la~~G~---~-V~l~d~-~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVi 74 (403)
||..++..++++|+ + ++++++ +++.++...+ ..+ +..+.+. +.++++|+||
T Consensus 15 mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~-------------~~~~~~~~~~~~~~DiVi 71 (245)
T PRK07634 15 MAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQA----------RYN-------------VSTTTDWKQHVTSVDTIV 71 (245)
T ss_pred HHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHH----------HcC-------------cEEeCChHHHHhcCCEEE
Confidence 78899999988873 3 677887 4566544321 112 1223444 5578999999
Q ss_pred EecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCC-CeEEEecCCCCCHHHHHH
Q 015610 75 EAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVM-PLLEIVRTNQTSPQVIVD 153 (403)
Q Consensus 75 eav~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~-~lvevv~~~~t~~e~~~~ 153 (403)
.|+|... -++++.++.+..+ +.+|.|.+.+++++.|.+.+....+++-+||-.|.... ...-++.+...+++..+.
T Consensus 72 iavp~~~--~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~ 148 (245)
T PRK07634 72 LAMPPSA--HEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTMGQSVNETHKET 148 (245)
T ss_pred EecCHHH--HHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHH
Confidence 9999764 4667777776665 56777888899999998887654466667775444321 222234556678999999
Q ss_pred HHHHHHHcCCCcEEecccchhh------hhhhHHHHHHHHH-H-HHHcCCCHHHHHHHH
Q 015610 154 LLDIGKKIKKTPIVVGNCTGFA------VNRMFFPYTQAAF-L-LVERGTDLYLIDRAI 204 (403)
Q Consensus 154 ~~~l~~~lGk~~v~~~d~~G~i------~nRi~~~~~~Ea~-~-l~~~G~~~~~iD~a~ 204 (403)
++.++..+|..+.. .+..-.. .+--+...+.+++ . .++.|+++++..+++
T Consensus 149 v~~lf~~~G~~~~~-~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~ 206 (245)
T PRK07634 149 LQLILKGIGTSQLC-TEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLV 206 (245)
T ss_pred HHHHHHhCCCEEEE-CHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999988864 3211000 0101112233332 2 335588888877776
No 108
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.24 E-value=2.5e-06 Score=80.86 Aligned_cols=101 Identities=23% Similarity=0.330 Sum_probs=74.8
Q ss_pred ChHHHHHHHHHCC----CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcccccc-ccccCCCCeEEE
Q 015610 1 MGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFKDVDMVIE 75 (403)
Q Consensus 1 MG~~iA~~la~~G----~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~~aDlVie 75 (403)
||.++|..++..| .+|+++|++++.++.....++...... ...+++.+++ ++++++||+||+
T Consensus 10 vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~~~~aDiVv~ 76 (263)
T cd00650 10 VGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEAFKDADVVII 76 (263)
T ss_pred HHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHHhCCCCEEEE
Confidence 6889999999999 799999999988776554443332221 1235666667 488999999999
Q ss_pred --------------ecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhc
Q 015610 76 --------------AIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT 117 (403)
Q Consensus 76 --------------av~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~ 117 (403)
.+.++..+++++.+++.+.+ |++++.-- |-|.+.++..+
T Consensus 77 t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~--tNP~d~~t~~~ 129 (263)
T cd00650 77 TAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVV--SNPVDIITYLV 129 (263)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe--cCcHHHHHHHH
Confidence 77888999999999999998 77776643 24666554443
No 109
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.19 E-value=9.2e-07 Score=85.05 Aligned_cols=76 Identities=18% Similarity=0.195 Sum_probs=67.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCC---chHHHHHHhhchHHHHHHHHHHHHhCCCCCccccHH
Q 015610 173 GFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAI-TKFGMP---MGPFRLADLVGFGVAIATGMQFIENFPERTYKSMII 246 (403)
Q Consensus 173 G~i~nRi~~~~~~Ea~~l~~~G~--~~~~iD~a~-~~~g~~---~GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~l 246 (403)
-.+++|++.+.+|||+++++||+ ++.++|-+. .|+||| .|||.+.|..|++.++..++.+.. +.|+.++
T Consensus 294 ed~v~~~~~p~VnEal~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~l 368 (380)
T KOG1683|consen 294 EDFVEFLLSPFVNEALRCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQLL 368 (380)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHHH
Confidence 35899999999999999999997 999999998 999998 499999999999999999988865 4488888
Q ss_pred HHHHHcC
Q 015610 247 PIMQEDK 253 (403)
Q Consensus 247 ~~~v~~G 253 (403)
..+..+|
T Consensus 369 ~~~a~~~ 375 (380)
T KOG1683|consen 369 KDHAKSG 375 (380)
T ss_pred HHHHhhh
Confidence 8887664
No 110
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.16 E-value=3.6e-05 Score=74.06 Aligned_cols=156 Identities=16% Similarity=0.175 Sum_probs=102.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
+|.++|..|+++||+|++|.++++..++..+. +.+-+.+ . |.. ....+..++|+ +++++||+|+.+||-
T Consensus 12 wGTALA~~la~ng~~V~lw~r~~~~~~~i~~~-~~N~~yL-p-~i~-------lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 12 WGTALAKVLARNGHEVRLWGRDEEIVAEINET-RENPKYL-P-GIL-------LPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred HHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc-CcCcccc-C-Ccc-------CCcccccccCHHHHHhcCCEEEEECCh
Confidence 48999999999999999999999998775432 1111111 1 111 12345667777 667889999999997
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCCCC------HHHHHhhcCCCCcEEEEecCCCCC-------CCCeEEEecCCCC
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTSTID------LNLIGERTYSKDRIVGAHFFSPAH-------VMPLLEIVRTNQT 146 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntStl~------~~~la~~~~~~~r~ig~hf~~P~~-------~~~lvevv~~~~t 146 (403)
. .-+.+++++...+++++++.+.|=++- ++++.+..-...+ +-.+..|+ ..|..-++.+ .
T Consensus 82 ~--~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~---~~vLSGPs~A~EVa~g~pta~~vas--~ 154 (329)
T COG0240 82 Q--ALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNP---IAVLSGPSFAKEVAQGLPTAVVVAS--N 154 (329)
T ss_pred H--HHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCe---EEEEECccHHHHHhcCCCcEEEEec--C
Confidence 6 467777888778899999988765543 4455544321111 33344333 4566666666 4
Q ss_pred CHHHHHHHHHHHHHcCCCcEEecccch
Q 015610 147 SPQVIVDLLDIGKKIKKTPIVVGNCTG 173 (403)
Q Consensus 147 ~~e~~~~~~~l~~~lGk~~v~~~d~~G 173 (403)
+++..+.++.++..=-.++....|..|
T Consensus 155 d~~~a~~v~~~f~~~~Frvy~~~Dv~G 181 (329)
T COG0240 155 DQEAAEKVQALFSSPYFRVYTSTDVIG 181 (329)
T ss_pred CHHHHHHHHHHhCCCcEEEEecCchhh
Confidence 888888888877764455555566554
No 111
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.16 E-value=0.00014 Score=68.30 Aligned_cols=166 Identities=17% Similarity=0.159 Sum_probs=107.2
Q ss_pred CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCCChHHHHHHHHHH
Q 015610 13 NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADL 91 (403)
Q Consensus 13 G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e~~~~K~~~~~~l 91 (403)
-++|++++++++++++..+ +.|. +.+.+. +.+++||+||.||+ +.++ ..++.++
T Consensus 9 ~~~I~v~~R~~e~~~~l~~----------~~g~-------------~~~~~~~e~~~~aDiIiLaVk-P~~i-~~vl~~l 63 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAK----------ELGI-------------VASSDAQEAVKEADVVFLAVK-PQDL-EEVLSEL 63 (245)
T ss_pred CCeEEEEcCCHHHHHHHHH----------HcCc-------------EEeCChHHHHhhCCEEEEEeC-HHHH-HHHHHHH
Confidence 4689999999988765431 1131 223344 45688999999999 4444 4556777
Q ss_pred HhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCC-CCeEEEecCCCCCHHHHHHHHHHHHHcCCCcEEecc
Q 015610 92 EKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 170 (403)
Q Consensus 92 ~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~-~~lvevv~~~~t~~e~~~~~~~l~~~lGk~~v~~~d 170 (403)
...+.++.+|.|.+.++++++|.+.+....+++-+=+--|... ....-+..++..+++..+.+..++..+|+...+ .+
T Consensus 64 ~~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v-~E 142 (245)
T TIGR00112 64 KSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVEL-PE 142 (245)
T ss_pred hhhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEE-CH
Confidence 7666778899999999999999888754334443222223332 344556778888999999999999999965543 32
Q ss_pred c--chhh-hh---hhHHHHHHHHH--HHHHcCCCHHHHHHHH
Q 015610 171 C--TGFA-VN---RMFFPYTQAAF--LLVERGTDLYLIDRAI 204 (403)
Q Consensus 171 ~--~G~i-~n---Ri~~~~~~Ea~--~l~~~G~~~~~iD~a~ 204 (403)
. ..+. +. --+..++.|++ ..++.|+++++..+.+
T Consensus 143 ~~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv 184 (245)
T TIGR00112 143 ALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELA 184 (245)
T ss_pred HHcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 1111 01 11122234443 3446699999888887
No 112
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.12 E-value=5.1e-05 Score=71.86 Aligned_cols=168 Identities=15% Similarity=0.148 Sum_probs=106.7
Q ss_pred ChHHHHHHHHHCCC----ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEE
Q 015610 1 MGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIE 75 (403)
Q Consensus 1 MG~~iA~~la~~G~----~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVie 75 (403)
||++|+..+.++|. +++++|++++.+ +. ....+. +.+.+||+||.
T Consensus 14 mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~~-------------~~~~~~~~~~~~~D~Vil 63 (260)
T PTZ00431 14 MGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------PF-------------VYLQSNEELAKTCDIIVL 63 (260)
T ss_pred HHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------Ce-------------EEeCChHHHHHhCCEEEE
Confidence 89999999998873 499999887531 10 112232 45678999999
Q ss_pred ecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecC-C-CCC-CCCeEEEecCCCCCHHHHH
Q 015610 76 AIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFF-S-PAH-VMPLLEIVRTNQTSPQVIV 152 (403)
Q Consensus 76 av~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~-~-P~~-~~~lvevv~~~~t~~e~~~ 152 (403)
|++-. .-..++.++.+.+++++| .|...+++++.+.+.+....+++ +++ | |.. .....-++++..++++..+
T Consensus 64 avkp~--~~~~vl~~i~~~l~~~~i-IS~~aGi~~~~l~~~~~~~~~vv--r~mPn~p~~~g~g~t~i~~~~~~~~~~~~ 138 (260)
T PTZ00431 64 AVKPD--LAGKVLLEIKPYLGSKLL-ISICGGLNLKTLEEMVGVEAKIV--RVMPNTPSLVGQGSLVFCANNNVDSTDKK 138 (260)
T ss_pred EeCHH--HHHHHHHHHHhhccCCEE-EEEeCCccHHHHHHHcCCCCeEE--EECCCchhHhcceeEEEEeCCCCCHHHHH
Confidence 98754 355677778777766655 56677889988877765433333 444 3 443 3355667788888999999
Q ss_pred HHHHHHHHcCCCcEEeccc--chh-hhh---hhHHHHHHHHH--HHHHcCCCHHHHHHHH
Q 015610 153 DLLDIGKKIKKTPIVVGNC--TGF-AVN---RMFFPYTQAAF--LLVERGTDLYLIDRAI 204 (403)
Q Consensus 153 ~~~~l~~~lGk~~v~~~d~--~G~-i~n---Ri~~~~~~Ea~--~l~~~G~~~~~iD~a~ 204 (403)
.+..+++.+|....+ .+. ..+ .+. --+..++.|++ ..+..|++.++..+..
T Consensus 139 ~v~~l~~~~G~~~~v-~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~ 197 (260)
T PTZ00431 139 KVIDIFSACGIIQEI-KEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLV 197 (260)
T ss_pred HHHHHHHhCCcEEEE-ChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999976654 221 110 000 01122233433 2335578777776665
No 113
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.07 E-value=5.9e-06 Score=74.13 Aligned_cols=98 Identities=21% Similarity=0.224 Sum_probs=63.7
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGR--------VRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVD 71 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aD 71 (403)
+|..+|..||.+||+|+.+|++++.++...+. +...+.+.++ -.|++++++. +++++||
T Consensus 11 vGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~------------~~~l~~t~~~~~ai~~ad 78 (185)
T PF03721_consen 11 VGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVS------------AGRLRATTDIEEAIKDAD 78 (185)
T ss_dssp THHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHH------------TTSEEEESEHHHHHHH-S
T ss_pred chHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccc------------cccchhhhhhhhhhhccc
Confidence 58899999999999999999999988776411 1111122221 2466777777 5589999
Q ss_pred eEEEecCCChH--------HHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 015610 72 MVIEAIIENVS--------LKQQIFADLEKYCPPHCILASNTSTIDLN 111 (403)
Q Consensus 72 lVieav~e~~~--------~K~~~~~~l~~~~~~~~ilasntStl~~~ 111 (403)
++|-|||-+.+ --......|.+.++++++++ .-||.++.
T Consensus 79 v~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV-~~STvppG 125 (185)
T PF03721_consen 79 VVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV-IESTVPPG 125 (185)
T ss_dssp EEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE-ESSSSSTT
T ss_pred eEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE-EccEEEEe
Confidence 99999986543 23455667888899998887 35666654
No 114
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.98 E-value=3.8e-05 Score=79.44 Aligned_cols=110 Identities=12% Similarity=0.006 Sum_probs=76.1
Q ss_pred CCCccccCccccccCCCC-------CCCCChhHHHHHHHHhhccCccCCcc-ccc---cchHHHHHHHHHHHHHHHHHHH
Q 015610 253 KRAGETTRKGFYLYDERR-------KASPDPEVKKFIEKARSMSGVAIDPK-FAK---LSEKDIVEMIFFPVVNEACRVF 321 (403)
Q Consensus 253 G~~G~k~g~GFy~y~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~i~~r~~~~~~~ea~~~l 321 (403)
.+.|+.-+.+|++..... ...+++++.+.+...- ...++ +.. ..++++.||++.++++||+.++
T Consensus 129 ~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~e~~~~~~~~~-----~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~ 203 (495)
T PRK07531 129 THPERLFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKEIL-----REIGMKPVHIAKEIDAFVGDRLLEALWREALWLV 203 (495)
T ss_pred CCcceEEEEecCCCcccCceEEEcCCCCCCHHHHHHHHHHH-----HHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHH
Confidence 455666777888754322 2345666655444331 11122 221 3579999999999999999999
Q ss_pred hcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCH-HHHHHHHHHH
Q 015610 322 AEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGS-KYIYSRLEEW 368 (403)
Q Consensus 322 ~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~~G~-~~~~~~~~~~ 368 (403)
++|++ |+++||.++..|+|++.-.-|||+..|..|. +.+.+.++++
T Consensus 204 ~~g~~-s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~~~g~~~~~~~~ 250 (495)
T PRK07531 204 KDGIA-TTEEIDDVIRYSFGLRWAQMGLFETYRIAGGEAGMRHFLAQF 250 (495)
T ss_pred HcCCC-CHHHHHHHHhhccCCCccccchHHHHHhcCcHHHHHHHHHHh
Confidence 99999 8999999999999875333499999999884 4444444444
No 115
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.97 E-value=8.3e-05 Score=67.20 Aligned_cols=85 Identities=7% Similarity=0.054 Sum_probs=58.0
Q ss_pred CCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCC-C----CeEEEec
Q 015610 68 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-M----PLLEIVR 142 (403)
Q Consensus 68 ~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~-~----~lvevv~ 142 (403)
++||+||.|+|.+. -.++++++. .+|++.+|+ +. .+.+. ..+|+|.||++.+.. . +.+-++
T Consensus 30 ~~~DlVilavPv~~--~~~~i~~~~------~~v~Dv~Sv-K~-~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv~- 95 (197)
T PRK06444 30 KKADHAFLSVPIDA--ALNYIESYD------NNFVEISSV-KW-PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIFI- 95 (197)
T ss_pred CCCCEEEEeCCHHH--HHHHHHHhC------CeEEecccc-CH-HHHHh---cCCEEecCCCCCCCcCcccccceEEEE-
Confidence 57999999999874 334444443 367777765 54 34433 347999999985432 1 334343
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEe
Q 015610 143 TNQTSPQVIVDLLDIGKKIKKTPIVV 168 (403)
Q Consensus 143 ~~~t~~e~~~~~~~l~~~lGk~~v~~ 168 (403)
.+.++++.++.++++++ |.+++.+
T Consensus 96 ~~~~~~~~~~~~~~l~~--G~~~~~~ 119 (197)
T PRK06444 96 NDISRDNYLNEINEMFR--GYHFVEM 119 (197)
T ss_pred CCCCCHHHHHHHHHHHc--CCEEEEe
Confidence 66788999999999998 7777766
No 116
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.94 E-value=7.2e-06 Score=71.54 Aligned_cols=94 Identities=21% Similarity=0.248 Sum_probs=66.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcC--CCCHHHHHHhhcCccccccc-cccCCCCeEEEec
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG--KMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAI 77 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g--~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav 77 (403)
||..+|..|+.+|++|++|.++++.++...+ .+. ..-+. ...-.++..++|+ ++++++|+||-++
T Consensus 10 ~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~----------~~~n~~~~~~--~~l~~~i~~t~dl~~a~~~ad~Iiiav 77 (157)
T PF01210_consen 10 WGTALAALLADNGHEVTLWGRDEEQIEEINE----------TRQNPKYLPG--IKLPENIKATTDLEEALEDADIIIIAV 77 (157)
T ss_dssp HHHHHHHHHHHCTEEEEEETSCHHHHHHHHH----------HTSETTTSTT--SBEETTEEEESSHHHHHTT-SEEEE-S
T ss_pred HHHHHHHHHHHcCCEEEEEeccHHHHHHHHH----------hCCCCCCCCC--cccCcccccccCHHHHhCcccEEEecc
Confidence 6899999999999999999999987765532 111 00000 1112346667777 6789999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCCcEEEecCCCC
Q 015610 78 IENVSLKQQIFADLEKYCPPHCILASNTSTI 108 (403)
Q Consensus 78 ~e~~~~K~~~~~~l~~~~~~~~ilasntStl 108 (403)
|-.. -+.+++++.+++++++++.+.+=++
T Consensus 78 Ps~~--~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 78 PSQA--HREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -GGG--HHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cHHH--HHHHHHHHhhccCCCCEEEEecCCc
Confidence 9875 5789999999999999999877665
No 117
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.92 E-value=0.00021 Score=64.41 Aligned_cols=143 Identities=19% Similarity=0.211 Sum_probs=94.5
Q ss_pred ChHHHHHHHHHCCCceEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~-~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e 79 (403)
||.++|..|+++||+|++-.+ ++++++.+.+ ..+ .+++..+..++++.||+||.+||-
T Consensus 12 iG~alA~~~a~ag~eV~igs~r~~~~~~a~a~----------~l~-----------~~i~~~~~~dA~~~aDVVvLAVP~ 70 (211)
T COG2085 12 IGSALALRLAKAGHEVIIGSSRGPKALAAAAA----------ALG-----------PLITGGSNEDAAALADVVVLAVPF 70 (211)
T ss_pred HHHHHHHHHHhCCCeEEEecCCChhHHHHHHH----------hhc-----------cccccCChHHHHhcCCEEEEeccH
Confidence 699999999999999999965 4555444421 112 124556666889999999999997
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCCC----------------CHH-HHHhhcCCCCcEEEE-e------cCC-CCCC
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTSTI----------------DLN-LIGERTYSKDRIVGA-H------FFS-PAHV 134 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntStl----------------~~~-~la~~~~~~~r~ig~-h------f~~-P~~~ 134 (403)
.. -..+.+++.+... |.|+.|.|-.+ +.+ .+++.++++ |++.. | +-+ +...
T Consensus 71 ~a--~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~a~~l~~~~~~~ 146 (211)
T COG2085 71 EA--IPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIPAAVLADLAKPG 146 (211)
T ss_pred HH--HHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccCHHHhccCCCcC
Confidence 64 6677778877666 78888755431 222 233444444 33221 1 111 1111
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCCcEEecc
Q 015610 135 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 170 (403)
Q Consensus 135 ~~lvevv~~~~t~~e~~~~~~~l~~~lGk~~v~~~d 170 (403)
.+..-.+.|. |.+..+.+.++.+.+|..|+-++.
T Consensus 147 ~~~~v~vagD--D~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 147 GRRDVLVAGD--DAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred CceeEEEecC--cHHHHHHHHHHHHhcCcceeeccc
Confidence 3455556663 788999999999999999998864
No 118
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.92 E-value=0.00029 Score=67.99 Aligned_cols=157 Identities=13% Similarity=0.079 Sum_probs=87.5
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHhhcCcccccccc-ccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYE-SFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~-~~~~aDlVieav~ 78 (403)
||..+|..|+++|++|+++++ ++.++... +.|. +.....+.. -.....++.+ ...++|+||.|++
T Consensus 11 iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~-----------~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~vilavk 77 (305)
T PRK12921 11 VGGTFGGRLLEAGRDVTFLVR-PKRAKALR-----------ERGLVIRSDHGDAV-VPGPVITDPEELTGPFDLVILAVK 77 (305)
T ss_pred HHHHHHHHHHHCCCceEEEec-HHHHHHHH-----------hCCeEEEeCCCeEE-ecceeecCHHHccCCCCEEEEEec
Confidence 689999999999999999999 76665442 2221 000000000 0111233443 3488999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEecCCCCCH-HHHHhhcCCCCcEE-EEecCC-CCCCCCeEE------EecC--CCCC
Q 015610 79 ENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIV-GAHFFS-PAHVMPLLE------IVRT--NQTS 147 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~~~~~ilasntStl~~-~~la~~~~~~~r~i-g~hf~~-P~~~~~lve------vv~~--~~t~ 147 (403)
... -..++.++.+..+++++|.+..-++.. +.+.+.+.. ++++ |+.++. +......+. ++-| +...
T Consensus 78 ~~~--~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 78 AYQ--LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred ccC--HHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 753 345667788888888877755445553 345544432 2444 334332 111111111 1112 2233
Q ss_pred HHHHHHHHHHHHHcCCCcEEecccch
Q 015610 148 PQVIVDLLDIGKKIKKTPIVVGNCTG 173 (403)
Q Consensus 148 ~e~~~~~~~l~~~lGk~~v~~~d~~G 173 (403)
.+..+.+.+.+...|..+....|...
T Consensus 155 ~~~~~~l~~~l~~~g~~~~~~~di~~ 180 (305)
T PRK12921 155 SERTRAVRDALAGARLEVVLSENIRQ 180 (305)
T ss_pred CHHHHHHHHHHHhCCCCceecHHHHH
Confidence 45666777778888866666566433
No 119
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.82 E-value=3.6e-05 Score=69.93 Aligned_cols=95 Identities=23% Similarity=0.315 Sum_probs=66.9
Q ss_pred ChHHHHHHHHHCCC-ceEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcccccccc-----------
Q 015610 1 MGSGIATALILSNY-PVILKEVN---EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE----------- 65 (403)
Q Consensus 1 MG~~iA~~la~~G~-~V~l~d~~---~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----------- 65 (403)
||+.+|..|++.|+ +++++|.+ ++.+.+-. . .. ...|....+.....+.++....+.+
T Consensus 32 lGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~----~~--~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~i~~~~~ 104 (200)
T TIGR02354 32 LGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-Y----KA--SQVGEPKTEALKENISEINPYTEIEAYDEKITEENI 104 (200)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCEEccccccccc-C----Ch--hhCCCHHHHHHHHHHHHHCCCCEEEEeeeeCCHhHH
Confidence 69999999999999 69999999 66655421 0 00 1223333334444555544333222
Q ss_pred --ccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEe
Q 015610 66 --SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 103 (403)
Q Consensus 66 --~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilas 103 (403)
.++++|+|||| .++.+.|..++.++....+...+++.
T Consensus 105 ~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 105 DKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred HHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 36789999999 79999999999999998888888873
No 120
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.81 E-value=0.0033 Score=59.33 Aligned_cols=171 Identities=17% Similarity=0.127 Sum_probs=116.6
Q ss_pred ChHHHHHHHHHCC----CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEE
Q 015610 1 MGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIE 75 (403)
Q Consensus 1 MG~~iA~~la~~G----~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVie 75 (403)
||..|+.-|.++| .+|++.|++++.++... .+-|.. .+++. +.+..+|+||.
T Consensus 12 Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~----------~~~g~~-------------~~~~~~~~~~~advv~L 68 (266)
T COG0345 12 MGEAILSGLLKSGALPPEEIIVTNRSEEKRAALA----------AEYGVV-------------TTTDNQEAVEEADVVFL 68 (266)
T ss_pred HHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHH----------HHcCCc-------------ccCcHHHHHhhCCEEEE
Confidence 8999999999999 69999999999876332 122321 13333 66788999999
Q ss_pred ecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCC-CCeEEEecCCCCCHHHHHHH
Q 015610 76 AIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-MPLLEIVRTNQTSPQVIVDL 154 (403)
Q Consensus 76 av~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~-~~lvevv~~~~t~~e~~~~~ 154 (403)
||... .-.+++.++.. ..++.+|.|-..+++++.|...+. ..+++-+=|--|... ....-++.+...+++..+.+
T Consensus 69 avKPq--~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v 144 (266)
T COG0345 69 AVKPQ--DLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISANANVSEEDKAFV 144 (266)
T ss_pred EeChH--hHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecCccCCHHHHHHH
Confidence 98542 34455556655 668999999999999999988886 334444444334432 24455667788999999999
Q ss_pred HHHHHHcCCCcEEe-----------cccchhhhhhhHHHHHHHHHH--HHHcCCCHHHHHHHH
Q 015610 155 LDIGKKIKKTPIVV-----------GNCTGFAVNRMFFPYTQAAFL--LVERGTDLYLIDRAI 204 (403)
Q Consensus 155 ~~l~~~lGk~~v~~-----------~d~~G~i~nRi~~~~~~Ea~~--l~~~G~~~~~iD~a~ 204 (403)
..+++.+|+...+- +.+|.|+ .++.|++. -+..|++.++.-+..
T Consensus 145 ~~l~~~~G~v~~v~E~~~da~TaisGSgPAyv------~~~iEal~~agv~~Gl~~~~A~~l~ 201 (266)
T COG0345 145 EALLSAVGKVVEVEESLMDAVTALSGSGPAYV------FLFIEALADAGVRLGLPREEARELA 201 (266)
T ss_pred HHHHHhcCCeEEechHHhhHHHHHhcCCHHHH------HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999766542 1223332 23445543 335677777766655
No 121
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.79 E-value=0.00024 Score=69.55 Aligned_cols=101 Identities=12% Similarity=-0.035 Sum_probs=74.2
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||+++|..+...|++|++||++++..... ++...++ +.+++||+|+.++|.
T Consensus 157 IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~aDiVil~lP~ 208 (330)
T PRK12480 157 IGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKDADIISLHVPA 208 (330)
T ss_pred HHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhcCCEEEEeCCC
Confidence 68999999999999999999998542110 0123344 567899999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHHhhcC-CCCcEEEEecC
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY-SKDRIVGAHFF 129 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntSt--l~~~~la~~~~-~~~r~ig~hf~ 129 (403)
..+.+..+.+++.+.++++++|+..+-+ +.-..|.+.+. .+-+-.++--|
T Consensus 209 t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~ 261 (330)
T PRK12480 209 NKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTY 261 (330)
T ss_pred cHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEecc
Confidence 9998888888888999999999865544 44446777774 22233455544
No 122
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.79 E-value=0.00053 Score=66.90 Aligned_cols=180 Identities=13% Similarity=0.142 Sum_probs=117.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccc----cCCCCeEEEe
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES----FKDVDMVIEA 76 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----~~~aDlViea 76 (403)
||+.+|++.+.+||.|.+|+|+.++.++..+ +++.- .+|..+.++|+ ++.---|+.+
T Consensus 14 MG~NLaLNi~~~G~~VavyNRt~~ktd~f~~----------~~~~~---------k~i~~~~sieefV~~Le~PRkI~lM 74 (473)
T COG0362 14 MGSNLALNIADHGYTVAVYNRTTEKTDEFLA----------ERAKG---------KNIVPAYSIEEFVASLEKPRKILLM 74 (473)
T ss_pred hhHHHHHHHHhcCceEEEEeCCHHHHHHHHH----------hCccC---------CCccccCcHHHHHHHhcCCceEEEE
Confidence 9999999999999999999999999888752 22211 13444555432 3445556666
Q ss_pred cCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHHhhcCCCCcEEEEecC-CCCCC-------CCeEEEecCCCC
Q 015610 77 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFF-SPAHV-------MPLLEIVRTNQT 146 (403)
Q Consensus 77 v~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~--~la~~~~~~~r~ig~hf~-~P~~~-------~~lvevv~~~~t 146 (403)
|---. .--.++.+|.+++.++-|+.+..-|.-.+ +-.+.+.. -|+||. ..+++ +| -|||| .
T Consensus 75 VkAG~-~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~----~Gi~FvG~GVSGGEeGA~~GP--SiMpG--G 145 (473)
T COG0362 75 VKAGT-PVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSE----KGILFVGMGVSGGEEGARHGP--SIMPG--G 145 (473)
T ss_pred EecCC-cHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHh----cCCeEEeccccccccccccCC--CcCCC--C
Confidence 54431 12456677889999999999766553332 22333322 266665 35553 23 36777 5
Q ss_pred CHHHHHHHHHHHHHcCC----Cc--EEec-ccchh----hhhhhH---HHHHHHHHHHHHcC--CCHHHHHHHHHhcC
Q 015610 147 SPQVIVDLLDIGKKIKK----TP--IVVG-NCTGF----AVNRMF---FPYTQAAFLLVERG--TDLYLIDRAITKFG 208 (403)
Q Consensus 147 ~~e~~~~~~~l~~~lGk----~~--v~~~-d~~G~----i~nRi~---~~~~~Ea~~l~~~G--~~~~~iD~a~~~~g 208 (403)
+++..+.+.++++.+.. .| .+++ ++.|. |-|-|= ..++.|+..++.+| ++.++|-.++..++
T Consensus 146 ~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN 223 (473)
T COG0362 146 QKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWN 223 (473)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhc
Confidence 89999999999987643 22 2344 45663 334442 44689999999874 59999988875443
No 123
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.72 E-value=0.00061 Score=67.15 Aligned_cols=163 Identities=11% Similarity=0.099 Sum_probs=99.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC---HHHHHHhhcCccccccc-cccCCCCeEEEe
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT---QEKFEKTISLLTGVLDY-ESFKDVDMVIEA 76 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~---~~~~~~~~~~i~~~~~~-~~~~~aDlViea 76 (403)
||..+|..|+++| +|++|.++++..+...+ .+... ++.. ....++..++++ ++++++|+||-|
T Consensus 18 ~G~alA~~La~~g-~v~l~~~~~~~~~~i~~-----------~~~~~~~l~~~~-~l~~~i~~t~d~~~a~~~aDlVila 84 (341)
T PRK12439 18 WGTTVASICARRG-PTLQWVRSAETADDIND-----------NHRNSRYLGNDV-VLSDTLRATTDFAEAANCADVVVMG 84 (341)
T ss_pred HHHHHHHHHHHCC-CEEEEeCCHHHHHHHHh-----------cCCCcccCCCCc-ccCCCeEEECCHHHHHhcCCEEEEE
Confidence 7999999999999 79999999988766532 11100 0000 011234556666 568899999999
Q ss_pred cCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH------HH-HHhhcCCCCcEEEEecCCCCC------CCCeEEEecC
Q 015610 77 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDL------NL-IGERTYSKDRIVGAHFFSPAH------VMPLLEIVRT 143 (403)
Q Consensus 77 v~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~------~~-la~~~~~~~r~ig~hf~~P~~------~~~lvevv~~ 143 (403)
+|-. .-..+++++.+.+++++++.|.+-++.. ++ +.+.+.. .++ +. ...|-. ..+...++.+
T Consensus 85 vps~--~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~-~~-l~GP~~a~ev~~g~~t~~via~ 159 (341)
T PRK12439 85 VPSH--GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPA-GI-LAGPNIAREVAEGYAAAAVLAM 159 (341)
T ss_pred eCHH--HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCe-EE-EECCCHHHHHHcCCCeEEEEEe
Confidence 9944 3566788888888999877666656664 23 3333321 122 11 112332 2343444444
Q ss_pred CCCCHHHHHHHHHHHHHcCCCcEEecccchhhhhhhHHHH
Q 015610 144 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPY 183 (403)
Q Consensus 144 ~~t~~e~~~~~~~l~~~lGk~~v~~~d~~G~i~nRi~~~~ 183 (403)
. +++..+.+.+++..-+.++....|.-|-..--.+...
T Consensus 160 ~--~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv 197 (341)
T PRK12439 160 P--DQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNV 197 (341)
T ss_pred C--CHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHH
Confidence 2 6778888888888877777777776664433333333
No 124
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.70 E-value=7.5e-05 Score=72.35 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=64.3
Q ss_pred ChHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e 79 (403)
||.++|..++..|+ +|+++|++++. .++.. ++.. +.+. ......+++.+++++++++||+||-++.-
T Consensus 12 vG~~iA~~la~~g~~~VvlvDi~~~l-~~g~a-----~d~~-~~~~-----~~~~~~~i~~t~d~~~~~~aDiVIitag~ 79 (305)
T TIGR01763 12 VGATTAFRLAEKELADLVLLDVVEGI-PQGKA-----LDMY-EASP-----VGGFDTKVTGTNNYADTANSDIVVITAGL 79 (305)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCCh-hHHHH-----Hhhh-hhhh-----ccCCCcEEEecCCHHHhCCCCEEEEcCCC
Confidence 79999999999887 89999997663 33321 1110 1111 11123467777888889999999999982
Q ss_pred --------------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhh
Q 015610 80 --------------NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER 116 (403)
Q Consensus 80 --------------~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~ 116 (403)
|..+-+.+..+|.+.. +++++..-| -|.+-++..
T Consensus 80 p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~t--NP~di~t~~ 127 (305)
T TIGR01763 80 PRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVS--NPLDAMTYV 127 (305)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec--CcHHHHHHH
Confidence 3445555666677775 566665433 355544433
No 125
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.62 E-value=0.00031 Score=58.87 Aligned_cols=104 Identities=16% Similarity=0.183 Sum_probs=60.7
Q ss_pred ChHHHHHHHHHCCCceEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l-~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e 79 (403)
.|..++..|.++||+|.. +.++++..+++... .+. ..+.+..+.+.++|+||.+||+
T Consensus 21 VG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~----------~~~------------~~~~~~~~~~~~aDlv~iavpD 78 (127)
T PF10727_consen 21 VGTALARALARAGHEVVGVYSRSPASAERAAAF----------IGA------------GAILDLEEILRDADLVFIAVPD 78 (127)
T ss_dssp CCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------TT-----------------TTGGGCC-SEEEE-S-C
T ss_pred HHHHHHHHHHHCCCeEEEEEeCCcccccccccc----------ccc------------ccccccccccccCCEEEEEech
Confidence 478899999999999976 46888776666311 111 1122223667899999999999
Q ss_pred ChHHHHHHHHHHHhh--CCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEec
Q 015610 80 NVSLKQQIFADLEKY--CPPHCILASNTSTIDLNLIGERTYSKDRIVGAHF 128 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~--~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf 128 (403)
+. ...+.++|.+. ..++.|++=++-+++.+-|...-..-.....+||
T Consensus 79 da--I~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 79 DA--IAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp CH--HHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred HH--HHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 94 77778888877 7899999853333555444333233334566675
No 126
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.62 E-value=0.0026 Score=60.91 Aligned_cols=157 Identities=16% Similarity=0.068 Sum_probs=87.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHhhcCccccccccccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e 79 (403)
||.-+|..|+++|++|++++++ +.++... +.|. +....-+.....+..+++.+.+.++|+||-|+.-
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~-----------~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs 69 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALN-----------QEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKA 69 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHH-----------HCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccc
Confidence 7999999999999999999997 4444332 2231 0000000000122334445557799999999987
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH-HHHhhcCCCCcEEEE------ecCCCCCC----CCeEEEecCCCCCH
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVGA------HFFSPAHV----MPLLEIVRTNQTSP 148 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntStl~~~-~la~~~~~~~r~ig~------hf~~P~~~----~~lvevv~~~~t~~ 148 (403)
.. + ..++..+.+.+.++++|.+..-++... .+.+.+. ++++++. +...|-.. ..-+.+-..+. ..
T Consensus 70 ~~-~-~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~-~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~-~~ 145 (293)
T TIGR00745 70 YQ-T-EEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLP-ARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVG-EN 145 (293)
T ss_pred hh-H-HHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhC-ccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCC-ch
Confidence 63 3 456677888888988888766566544 4444443 2344432 22222210 01111211121 22
Q ss_pred HHHHHHHHHHHHcCCCcEEecccch
Q 015610 149 QVIVDLLDIGKKIKKTPIVVGNCTG 173 (403)
Q Consensus 149 e~~~~~~~l~~~lGk~~v~~~d~~G 173 (403)
+..+.+.+.+...|.......|.-+
T Consensus 146 ~~~~~l~~~l~~~~~~~~~~~di~~ 170 (293)
T TIGR00745 146 EAVEALAELLNEAGIPAELHGDILA 170 (293)
T ss_pred HHHHHHHHHHHhCCCCCEecchHHH
Confidence 5556666777777766666555444
No 127
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.61 E-value=0.0029 Score=61.57 Aligned_cols=162 Identities=9% Similarity=0.070 Sum_probs=92.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHhhcCccccccccccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM-TQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e 79 (403)
||+.+|..|+++|++|+++.+++. +... +.|.. ....-+.....+...++.++...+|+||-|++-
T Consensus 16 iG~~lA~~L~~~g~~V~~~~r~~~--~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~ 82 (313)
T PRK06249 16 IGGFYGAMLARAGFDVHFLLRSDY--EAVR-----------ENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKT 82 (313)
T ss_pred HHHHHHHHHHHCCCeEEEEEeCCH--HHHH-----------hCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecC
Confidence 689999999999999999999863 2211 22210 000000000112223344567789999999986
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH-HHHhhcCCCCcEEE-EecC-----CCCC---C-CCeEEEecCCCCC-
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVG-AHFF-----SPAH---V-MPLLEIVRTNQTS- 147 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntStl~~~-~la~~~~~~~r~ig-~hf~-----~P~~---~-~~lvevv~~~~t~- 147 (403)
.. + .+++..+.+.+++++++.+..-++... .+.+.+. ++++++ +.++ .|-. . ..-+.+-.-...+
T Consensus 83 ~~-~-~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~ 159 (313)
T PRK06249 83 TA-N-ALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAA 159 (313)
T ss_pred CC-h-HhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCcc
Confidence 64 2 457778888888888887666667654 4554543 234443 2222 2321 1 1111121111112
Q ss_pred ----HHHHHHHHHHHHHcCCCcEEecccchhhhhh
Q 015610 148 ----PQVIVDLLDIGKKIKKTPIVVGNCTGFAVNR 178 (403)
Q Consensus 148 ----~e~~~~~~~l~~~lGk~~v~~~d~~G~i~nR 178 (403)
.+.++.+.++++..|..+....|....+...
T Consensus 160 ~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~K 194 (313)
T PRK06249 160 DDGITARVEEGAALFRAAGIDSQAMPDLAQARWQK 194 (313)
T ss_pred cchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhH
Confidence 4666777788888888777767755543333
No 128
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.59 E-value=0.0018 Score=62.45 Aligned_cols=102 Identities=17% Similarity=0.084 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||..+|..|+++|++|++++++++.++... +.|..- .+-+ ...++...++.+.+.++|+||.|++..
T Consensus 11 ~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~-----------~~g~~~-~~~~-~~~~~~~~~~~~~~~~~d~vila~k~~ 77 (304)
T PRK06522 11 IGGLFGAALAQAGHDVTLVARRGAHLDALN-----------ENGLRL-EDGE-ITVPVLAADDPAELGPQDLVILAVKAY 77 (304)
T ss_pred HHHHHHHHHHhCCCeEEEEECChHHHHHHH-----------HcCCcc-cCCc-eeecccCCCChhHcCCCCEEEEecccc
Confidence 689999999999999999999888766543 222110 0000 001122344444458999999999965
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCH-HHHHhhc
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERT 117 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntStl~~-~~la~~~ 117 (403)
. -..+++.+.+.++++++|.+...++.. +.+.+.+
T Consensus 78 ~--~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~ 113 (304)
T PRK06522 78 Q--LPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYI 113 (304)
T ss_pred c--HHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhc
Confidence 3 366778888888888777766666664 3445444
No 129
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.46 E-value=0.0015 Score=63.95 Aligned_cols=161 Identities=14% Similarity=0.111 Sum_probs=88.2
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHhhcCccccccc-ccc-CCCCeEEEe
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK--MTQEKFEKTISLLTGVLDY-ESF-KDVDMVIEA 76 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~--~~~~~~~~~~~~i~~~~~~-~~~-~~aDlViea 76 (403)
||..+|..|+++|++|++|+++++.++...+. ..+. +.. ......++.++++ +++ .++|+||-|
T Consensus 11 ~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~---------~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~Dliiia 78 (326)
T PRK14620 11 FGTAIAIALSSKKISVNLWGRNHTTFESINTK---------RKNLKYLPT---CHLPDNISVKSAIDEVLSDNATCIILA 78 (326)
T ss_pred HHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc---------CCCcccCCC---CcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence 78999999999999999999998876554310 0010 000 0001123344555 344 589999999
Q ss_pred cCCChHHHHHHHHHHHh-hCCCCcEEEecCCCCCH------HH-HHhhcCCCCcEEEEecCCCC------CCCCeEEEec
Q 015610 77 IIENVSLKQQIFADLEK-YCPPHCILASNTSTIDL------NL-IGERTYSKDRIVGAHFFSPA------HVMPLLEIVR 142 (403)
Q Consensus 77 v~e~~~~K~~~~~~l~~-~~~~~~ilasntStl~~------~~-la~~~~~~~r~ig~hf~~P~------~~~~lvevv~ 142 (403)
||... -..+++++.+ .+++++.+.+.+.++.. ++ +.+.+.. .++.. +..|. ...+..-.+.
T Consensus 79 vks~~--~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~-~~~~~--~~Gp~~a~~~~~~~~~~~~~~ 153 (326)
T PRK14620 79 VPTQQ--LRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPN-NPIAI--LSGPSFAKEIAEKLPCSIVLA 153 (326)
T ss_pred eCHHH--HHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCC-CceEe--ecCCcHHHHHHcCCCcEEEEe
Confidence 98764 4556777877 77888766656666533 23 3333322 12211 11222 1123222223
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEecccchhhhhhhH
Q 015610 143 TNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMF 180 (403)
Q Consensus 143 ~~~t~~e~~~~~~~l~~~lGk~~v~~~d~~G~i~nRi~ 180 (403)
+ .+.+..+.+.+++..-+..+....|.-|......+
T Consensus 154 ~--~~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~ 189 (326)
T PRK14620 154 G--QNETLGSSLISKLSNENLKIIYSQDIIGVQIGAAL 189 (326)
T ss_pred c--CCHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHH
Confidence 3 34555555555555555555555676665444443
No 130
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.45 E-value=0.00046 Score=74.10 Aligned_cols=94 Identities=11% Similarity=0.097 Sum_probs=74.7
Q ss_pred EEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHHhhcCC-CCcEEEEecCCCCC------------CCC
Q 015610 73 VIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYS-KDRIVGAHFFSPAH------------VMP 136 (403)
Q Consensus 73 Vieav~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~---~la~~~~~-~~r~ig~hf~~P~~------------~~~ 136 (403)
||.|+|-. .-..++.++.+.+++++||++.+|+ +.. .+.+.+.. +.+|+|.|||+..+ .+.
T Consensus 1 vila~Pv~--~~~~~~~~~~~~~~~~~~vtDv~Sv-K~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~ 77 (673)
T PRK11861 1 VLLAAPVA--QTGPLLARIAPFLDASTIVTDAGST-KSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGR 77 (673)
T ss_pred CEEEcCHH--HHHHHHHHHhhhCCCCcEEEecCcc-cHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCC
Confidence 57788755 4678888999999999999998877 432 33333332 35799999998764 357
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCCcEEec
Q 015610 137 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 169 (403)
Q Consensus 137 lvevv~~~~t~~e~~~~~~~l~~~lGk~~v~~~ 169 (403)
.+.+++.+.++++.++.++++++.+|.+++.+.
T Consensus 78 ~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~ 110 (673)
T PRK11861 78 NVVLCALPENAPDALARVEAMWRAARADVRAMS 110 (673)
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 888999999999999999999999999988873
No 131
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=97.44 E-value=0.0041 Score=60.12 Aligned_cols=134 Identities=16% Similarity=0.164 Sum_probs=83.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||.++|.+|...|++|+++|+.....+.+. +.|. +.. ++ ++++.||+|+.++|.
T Consensus 27 IG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G~-------------~v~-sl~Eaak~ADVV~llLPd 81 (335)
T PRK13403 27 QGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADGF-------------EVM-SVSEAVRTAQVVQMLLPD 81 (335)
T ss_pred HHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcCC-------------EEC-CHHHHHhcCCEEEEeCCC
Confidence 799999999999999999987654433331 2232 122 34 678999999999997
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCC-------------CCCeEEEecCCCC
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH-------------VMPLLEIVRTNQT 146 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~-------------~~~lvevv~~~~t 146 (403)
+ +.+..+..++.+.++++++++-. -++.+- .- .+ .|..-+.+-..+|-. +.|.+.=| ....
T Consensus 82 ~-~t~~V~~~eil~~MK~GaiL~f~-hgfni~-~~-~i-~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av-~qd~ 155 (335)
T PRK13403 82 E-QQAHVYKAEVEENLREGQMLLFS-HGFNIH-FG-QI-NPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAV-HQDA 155 (335)
T ss_pred h-HHHHHHHHHHHhcCCCCCEEEEC-CCccee-cC-ce-eCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEE-EECC
Confidence 4 44544446799999999999753 355552 11 11 122233333344432 12322222 2234
Q ss_pred CHHHHHHHHHHHHHcCCCc
Q 015610 147 SPQVIVDLLDIGKKIKKTP 165 (403)
Q Consensus 147 ~~e~~~~~~~l~~~lGk~~ 165 (403)
+-.+.+.+..+.+.+|...
T Consensus 156 sg~a~~~ala~a~~iG~~r 174 (335)
T PRK13403 156 TGTALHVALAYAKGVGCTR 174 (335)
T ss_pred CCcHHHHHHHHHHHcCCCc
Confidence 4557778888888888763
No 132
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.30 E-value=0.00036 Score=55.19 Aligned_cols=82 Identities=20% Similarity=0.191 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHCC---CceEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEe
Q 015610 1 MGSGIATALILSN---YPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEA 76 (403)
Q Consensus 1 MG~~iA~~la~~G---~~V~l~-d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViea 76 (403)
||..|+..|+.+| ++|+++ +++++++++..+ +.+ . .....+..++++.||+||.|
T Consensus 10 mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~----------~~~-~----------~~~~~~~~~~~~~advvila 68 (96)
T PF03807_consen 10 MGSALARGLLASGIKPHEVIIVSSRSPEKAAELAK----------EYG-V----------QATADDNEEAAQEADVVILA 68 (96)
T ss_dssp HHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHH----------HCT-T----------EEESEEHHHHHHHTSEEEE-
T ss_pred HHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHH----------hhc-c----------ccccCChHHhhccCCEEEEE
Confidence 7999999999999 999965 999999887642 222 1 11111334778899999999
Q ss_pred cCCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 015610 77 IIENVSLKQQIFADLEKYCPPHCILASNTS 106 (403)
Q Consensus 77 v~e~~~~K~~~~~~l~~~~~~~~ilasntS 106 (403)
++... -.+++.++ ....++.++.|.+.
T Consensus 69 v~p~~--~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 69 VKPQQ--LPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp S-GGG--HHHHHHHH-HHHHTTSEEEEEST
T ss_pred ECHHH--HHHHHHHH-hhccCCCEEEEeCC
Confidence 98764 56688888 66778888887653
No 133
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.25 E-value=0.0015 Score=64.17 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=71.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||+.+|..+...|++|++||++++... . .+.|. .. .++ +.+++||+|+.++|-
T Consensus 161 IG~~vA~~l~~~G~~V~~~d~~~~~~~-~-----------~~~~~-------------~~-~~l~ell~~aDiV~l~lP~ 214 (333)
T PRK13243 161 IGQAVARRAKGFGMRILYYSRTRKPEA-E-----------KELGA-------------EY-RPLEELLRESDFVSLHVPL 214 (333)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCChhh-H-----------HHcCC-------------Ee-cCHHHHHhhCCEEEEeCCC
Confidence 689999999999999999999875421 1 01121 12 234 567899999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHHhhcCC-CCcEEEEecC
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS-KDRIVGAHFF 129 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntSt--l~~~~la~~~~~-~~r~ig~hf~ 129 (403)
+.+.+.-+-++..+.+++++++...+.+ +.-..|.+.+.. +-+-.++--|
T Consensus 215 t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~ 267 (333)
T PRK13243 215 TKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVF 267 (333)
T ss_pred ChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccC
Confidence 9988888877888889999999743333 334467777642 2233445544
No 134
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.24 E-value=0.0026 Score=62.51 Aligned_cols=157 Identities=19% Similarity=0.109 Sum_probs=91.6
Q ss_pred ChHHHHHHHHHCC--------CceEEEeCCH----HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-ccc
Q 015610 1 MGSGIATALILSN--------YPVILKEVNE----KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 67 (403)
Q Consensus 1 MG~~iA~~la~~G--------~~V~l~d~~~----~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 67 (403)
+|..+|..++.+| ++|++|.+++ +.+.+..++-+.....+ .| + ...++++.++++ +++
T Consensus 10 wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~yl--pg-i------~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 10 WGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYL--PG-I------KLPANLVAVPDLVEAA 80 (342)
T ss_pred HHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCcccc--CC-C------cCCCCeEEECCHHHHH
Confidence 5889999999999 9999999832 22222221110000000 01 0 012356677787 568
Q ss_pred CCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--------HHHhh-cCCCCcEEEEecCCCCC-----
Q 015610 68 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--------LIGER-TYSKDRIVGAHFFSPAH----- 133 (403)
Q Consensus 68 ~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~--------~la~~-~~~~~r~ig~hf~~P~~----- 133 (403)
++||+||-|||... -+.++.++.+.++++.++.|.|=++..+ ++.+. +.. + +-.+..|.
T Consensus 81 ~~ADiIIlAVPs~~--i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~--~---~~~lsGP~~A~Ev 153 (342)
T TIGR03376 81 KGADILVFVIPHQF--LEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI--P---CGVLSGANLANEV 153 (342)
T ss_pred hcCCEEEEECChHH--HHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC--C---eEEeeCcchHHHH
Confidence 99999999999774 6677888888888898888877665543 33222 211 1 11133332
Q ss_pred --CCCeEEEecCCCCC--HHHHHHHHHHHHHcCCCcEEecccch
Q 015610 134 --VMPLLEIVRTNQTS--PQVIVDLLDIGKKIKKTPIVVGNCTG 173 (403)
Q Consensus 134 --~~~lvevv~~~~t~--~e~~~~~~~l~~~lGk~~v~~~d~~G 173 (403)
..|..-++.+...+ .+..+.++.++..=-.++....|..|
T Consensus 154 a~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~G 197 (342)
T TIGR03376 154 AKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAG 197 (342)
T ss_pred HcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCccc
Confidence 33444455553211 77787877777654444444456544
No 135
>PRK07574 formate dehydrogenase; Provisional
Probab=97.16 E-value=0.0056 Score=61.12 Aligned_cols=128 Identities=15% Similarity=0.065 Sum_probs=82.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||+.+|..|...|++|+.||++....+... +.| ++...++ +.++.||+|+.++|.
T Consensus 203 IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~aDvV~l~lPl 258 (385)
T PRK07574 203 IGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-----------ELG-------------LTYHVSFDSLVSVCDVVTIHCPL 258 (385)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCchhhHh-----------hcC-------------ceecCCHHHHhhcCCEEEEcCCC
Confidence 688999999999999999999863322110 112 1223345 567999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCC---CCHHHHHhhcC-CCCcEEEEecCC--CCC------CCCeEEEecCCC-C
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY-SKDRIVGAHFFS--PAH------VMPLLEIVRTNQ-T 146 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntSt---l~~~~la~~~~-~~~r~ig~hf~~--P~~------~~~lvevv~~~~-t 146 (403)
+.+.+.-+=++..+.++++++|+ |+|. +.-..|.+.+. ..-+-.++--|. |.. .+|-+-+.|+-. .
T Consensus 259 t~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~ 337 (385)
T PRK07574 259 HPETEHLFDADVLSRMKRGSYLV-NTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGT 337 (385)
T ss_pred CHHHHHHhCHHHHhcCCCCcEEE-ECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccC
Confidence 99888776667888899999998 4444 33446777764 222334444332 432 345666666522 3
Q ss_pred CHHHHHH
Q 015610 147 SPQVIVD 153 (403)
Q Consensus 147 ~~e~~~~ 153 (403)
+.+..++
T Consensus 338 T~e~~~~ 344 (385)
T PRK07574 338 TLSAQAR 344 (385)
T ss_pred cHHHHHH
Confidence 4444443
No 136
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.15 E-value=0.00051 Score=59.26 Aligned_cols=97 Identities=12% Similarity=0.091 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecC
Q 015610 1 MGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G-~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
||.+++..|+..| ++|+++|++++..++..+.+. ..+ + .. ...+. +.+.++|+||.|+|
T Consensus 30 ~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~-------~~~-~----------~~-~~~~~~~~~~~~Dvvi~~~~ 90 (155)
T cd01065 30 AARAVAYALAELGAAKIVIVNRTLEKAKALAERFG-------ELG-I----------AI-AYLDLEELLAEADLIINTTP 90 (155)
T ss_pred HHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh-------hcc-c----------ce-eecchhhccccCCEEEeCcC
Confidence 6889999999885 899999999988765432211 000 0 01 12233 44789999999999
Q ss_pred CChH-HHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcC
Q 015610 79 ENVS-LKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY 118 (403)
Q Consensus 79 e~~~-~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~ 118 (403)
.+.. +....+. ...+++++++.+.+|....+++.+.++
T Consensus 91 ~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~ 129 (155)
T cd01065 91 VGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEAR 129 (155)
T ss_pred CCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHH
Confidence 9874 2222222 123688999987655533335655553
No 137
>PRK06436 glycerate dehydrogenase; Provisional
Probab=97.14 E-value=0.0024 Score=61.82 Aligned_cols=125 Identities=10% Similarity=0.041 Sum_probs=83.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||+.+|..+...|++|+.||++... .|.. ....++ +.++.||+|+.++|.
T Consensus 133 IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~~------------~~~~~l~ell~~aDiv~~~lp~ 183 (303)
T PRK06436 133 IGRRVALLAKAFGMNIYAYTRSYVN-----------------DGIS------------SIYMEPEDIMKKSDFVLISLPL 183 (303)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcc-----------------cCcc------------cccCCHHHHHhhCCEEEECCCC
Confidence 6899999887779999999987421 1110 002244 557899999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCC---CCHHHHHhhcCC-CCcEEEEecCC--CC---CCCCeEEEecC-C-CCCH
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFFS--PA---HVMPLLEIVRT-N-QTSP 148 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntSt---l~~~~la~~~~~-~~r~ig~hf~~--P~---~~~~lvevv~~-~-~t~~ 148 (403)
+.+.+.-+-++..+.+++++++. |+|. +.-..|.+.+.. +....++--|. |. +..+-+-+.|| . .+++
T Consensus 184 t~~T~~li~~~~l~~mk~ga~lI-N~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nviiTPHi~g~~t~ 262 (303)
T PRK06436 184 TDETRGMINSKMLSLFRKGLAII-NVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVILSPHVAGGMSG 262 (303)
T ss_pred CchhhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEECCccccccCH
Confidence 99888777777888899999997 4544 334477777743 33445555452 43 23466777787 2 3566
Q ss_pred HHHHHHH
Q 015610 149 QVIVDLL 155 (403)
Q Consensus 149 e~~~~~~ 155 (403)
+..+.+.
T Consensus 263 e~~~~~~ 269 (303)
T PRK06436 263 EIMQPAV 269 (303)
T ss_pred HHHHHHH
Confidence 6555443
No 138
>PLN03139 formate dehydrogenase; Provisional
Probab=97.11 E-value=0.0071 Score=60.34 Aligned_cols=128 Identities=13% Similarity=0.078 Sum_probs=84.5
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||+.+|..+...|++|+.||++....+... +.|. ....++ +.+++||+|+.++|.
T Consensus 210 IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-----------~~g~-------------~~~~~l~ell~~sDvV~l~lPl 265 (386)
T PLN03139 210 IGRLLLQRLKPFNCNLLYHDRLKMDPELEK-----------ETGA-------------KFEEDLDAMLPKCDVVVINTPL 265 (386)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcchhhHh-----------hcCc-------------eecCCHHHHHhhCCEEEEeCCC
Confidence 689999999999999999998753222110 1221 123355 557899999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCC---CCHHHHHhhcC-CCCcEEEEecCC--CCC------CCCeEEEecCCC-C
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY-SKDRIVGAHFFS--PAH------VMPLLEIVRTNQ-T 146 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntSt---l~~~~la~~~~-~~~r~ig~hf~~--P~~------~~~lvevv~~~~-t 146 (403)
+.+.+.-+-+++.+.++++++|. |++- +.-+.|.+.+. ..-+-.++--|. |.. .++-+-+.|+-. +
T Consensus 266 t~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~ 344 (386)
T PLN03139 266 TEKTRGMFNKERIAKMKKGVLIV-NNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGT 344 (386)
T ss_pred CHHHHHHhCHHHHhhCCCCeEEE-ECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEccccccc
Confidence 99988877778888999999997 4544 33346777774 233344555443 432 356677777632 3
Q ss_pred CHHHHHH
Q 015610 147 SPQVIVD 153 (403)
Q Consensus 147 ~~e~~~~ 153 (403)
+.+..++
T Consensus 345 t~~~~~r 351 (386)
T PLN03139 345 TIDAQLR 351 (386)
T ss_pred CHHHHHH
Confidence 4444443
No 139
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.05 E-value=0.0056 Score=60.69 Aligned_cols=158 Identities=15% Similarity=0.031 Sum_probs=92.4
Q ss_pred ChHHHHHHHHHCC-------CceEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCC
Q 015610 1 MGSGIATALILSN-------YPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVD 71 (403)
Q Consensus 1 MG~~iA~~la~~G-------~~V~l~d~~~~~-l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aD 71 (403)
||..+|..++.+| |+|.+|.++++. -++..+.|.+. .+.-..-+ .. ....+++.++|+ +++++||
T Consensus 22 wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~----~~N~~ylp-~~-~Lp~ni~~tsdl~eav~~aD 95 (365)
T PTZ00345 22 WGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTK----HENVKYLP-GI-KLPDNIVAVSDLKEAVEDAD 95 (365)
T ss_pred HHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhc----CCCcccCC-CC-cCCCceEEecCHHHHHhcCC
Confidence 6899999999998 899999999863 11111111110 00000000 00 122456677777 6789999
Q ss_pred eEEEecCCChHHHHHHHHHHHh--hCCCCcEEEecCCCCC--------HHHHHhh-cCCCCcEEEEecCCCCC-------
Q 015610 72 MVIEAIIENVSLKQQIFADLEK--YCPPHCILASNTSTID--------LNLIGER-TYSKDRIVGAHFFSPAH------- 133 (403)
Q Consensus 72 lVieav~e~~~~K~~~~~~l~~--~~~~~~ilasntStl~--------~~~la~~-~~~~~r~ig~hf~~P~~------- 133 (403)
+||-+||-.. -+.++.++.+ ..++++++.|.+=++. ++++... +.. ++ -.+..|.
T Consensus 96 iIvlAVPsq~--l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~--~~---~~LsGPs~A~Eva~ 168 (365)
T PTZ00345 96 LLIFVIPHQF--LESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI--PC---CALSGANVANDVAR 168 (365)
T ss_pred EEEEEcChHH--HHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC--Ce---EEEECCCHHHHHHc
Confidence 9999999764 6677788877 6777877776554443 3444333 321 21 1233232
Q ss_pred CCCeEEEecCCCCCHHHHHHHHHHHHHcCCCcEEecccch
Q 015610 134 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 173 (403)
Q Consensus 134 ~~~lvevv~~~~t~~e~~~~~~~l~~~lGk~~v~~~d~~G 173 (403)
..|..-++.+ .+.+..+.++.++..=-.++....|.-|
T Consensus 169 ~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~G 206 (365)
T PTZ00345 169 EEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIG 206 (365)
T ss_pred CCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence 3455555555 3778877777777754455555566544
No 140
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=97.00 E-value=0.03 Score=52.35 Aligned_cols=107 Identities=18% Similarity=0.225 Sum_probs=75.3
Q ss_pred ccccc-cccccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhc---CCCC-cEEEEecCC-C
Q 015610 58 LTGVL-DYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT---YSKD-RIVGAHFFS-P 131 (403)
Q Consensus 58 i~~~~-~~~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~---~~~~-r~ig~hf~~-P 131 (403)
++.++ |.|+++++|++|.=.|.-. .--.+.+++.+.+++++||+ ||-|+|+..+...+ .+.. .+..+|+-. |
T Consensus 129 vkVtsDD~EAvk~aei~I~ftPfG~-~t~~Iikki~~~ipEgAII~-~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaVP 206 (342)
T PRK00961 129 LKVTTDDREAVADADIVITWLPKGG-MQPDIIEKFADDIKEGAIVT-HACTIPTTKFAKIFKDLGRDDLNVTSYHPGAVP 206 (342)
T ss_pred ceEecCcHHHhcCCCEEEEecCCCC-CchHHHHHHHhhCCCCCEEe-ccccCCHHHHHHHHHHhCcccCCeeccCCCCCC
Confidence 44444 4599999999999999874 12567788889999999997 67788877666554 3221 233445543 3
Q ss_pred CCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCCcEEe
Q 015610 132 AHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 168 (403)
Q Consensus 132 ~~~~~lvevv~~~~t~~e~~~~~~~l~~~lGk~~v~~ 168 (403)
-..++. .+.-...++|.++++.++.+..|+.+..+
T Consensus 207 gt~Gq~--~i~egyAtEEqI~klveL~~sa~k~ay~~ 241 (342)
T PRK00961 207 EMKGQV--YIAEGYADEEAVEKLYEIGKKARGNAFKM 241 (342)
T ss_pred CCCCce--ecccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 222222 22335678999999999999999999987
No 141
>PRK15076 alpha-galactosidase; Provisional
Probab=96.99 E-value=0.0029 Score=64.27 Aligned_cols=58 Identities=26% Similarity=0.285 Sum_probs=42.5
Q ss_pred HCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCCC
Q 015610 11 LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIEN 80 (403)
Q Consensus 11 ~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e~ 80 (403)
..|.+|+++|+++++++.+...++..+... +. ..+++.++|+ +++++||+||+++--.
T Consensus 28 l~~~evvLvDid~er~~~~~~l~~~~~~~~---~~---------~~~i~~ttD~~eal~dADfVv~ti~vg 86 (431)
T PRK15076 28 LRDAEIALMDIDPERLEESEIVARKLAESL---GA---------SAKITATTDRREALQGADYVINAIQVG 86 (431)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHhc---CC---------CeEEEEECCHHHHhCCCCEEeEeeeeC
Confidence 357799999999999887665555554433 21 1356777784 8899999999998764
No 142
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.92 E-value=0.0043 Score=53.99 Aligned_cols=87 Identities=22% Similarity=0.209 Sum_probs=55.4
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCCh
Q 015610 2 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENV 81 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~~ 81 (403)
|+++|+.|...|-+|+++|++|-.+-+|. ..|- ...+-.+++..+|++|.+.-...
T Consensus 35 G~g~A~~lr~~Ga~V~V~e~DPi~alqA~-----------~dGf-------------~v~~~~~a~~~adi~vtaTG~~~ 90 (162)
T PF00670_consen 35 GKGIARALRGLGARVTVTEIDPIRALQAA-----------MDGF-------------EVMTLEEALRDADIFVTATGNKD 90 (162)
T ss_dssp HHHHHHHHHHTT-EEEEE-SSHHHHHHHH-----------HTT--------------EEE-HHHHTTT-SEEEE-SSSSS
T ss_pred cHHHHHHHhhCCCEEEEEECChHHHHHhh-----------hcCc-------------EecCHHHHHhhCCEEEECCCCcc
Confidence 89999999999999999999997655542 2342 22222267899999999887765
Q ss_pred HHHHHHHHHHHhhCCCCcEEEecCCC---CCHHHHHhh
Q 015610 82 SLKQQIFADLEKYCPPHCILASNTST---IDLNLIGER 116 (403)
Q Consensus 82 ~~K~~~~~~l~~~~~~~~ilasntSt---l~~~~la~~ 116 (403)
-+..+-|. .+++++|+++.+|. +.+..+.+.
T Consensus 91 vi~~e~~~----~mkdgail~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 91 VITGEHFR----QMKDGAILANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp SB-HHHHH----HS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred ccCHHHHH----HhcCCeEEeccCcCceeEeecccccc
Confidence 44555444 57999999976654 344444443
No 143
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.84 E-value=0.0062 Score=59.18 Aligned_cols=102 Identities=16% Similarity=0.117 Sum_probs=72.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||..+|..+...|++|+.||++++... +. . ......++ +.+++||+|+.++|.
T Consensus 147 IG~~vA~~l~afG~~V~~~~~~~~~~~----------------~~-~---------~~~~~~~l~e~l~~aDvvv~~lPl 200 (312)
T PRK15469 147 LGSKVAQSLQTWGFPLRCWSRSRKSWP----------------GV-Q---------SFAGREELSAFLSQTRVLINLLPN 200 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCCC----------------Cc-e---------eecccccHHHHHhcCCEEEECCCC
Confidence 688999999999999999998764321 10 0 00012234 567999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCC---CCHHHHHhhcC-CCCcEEEEecC
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY-SKDRIVGAHFF 129 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntSt---l~~~~la~~~~-~~~r~ig~hf~ 129 (403)
+.+.+.-+-++..+.+++++++. |++- +.-+.|.+.+. .+-+-.++--|
T Consensus 201 t~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~aL~~aL~~g~i~gaalDVf 253 (312)
T PRK15469 201 TPETVGIINQQLLEQLPDGAYLL-NLARGVHVVEDDLLAALDSGKVKGAMLDVF 253 (312)
T ss_pred CHHHHHHhHHHHHhcCCCCcEEE-ECCCccccCHHHHHHHHhcCCeeeEEecCC
Confidence 99998888788888899999997 4433 45557777774 33344555544
No 144
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.83 E-value=0.0075 Score=59.20 Aligned_cols=90 Identities=13% Similarity=0.020 Sum_probs=61.6
Q ss_pred ChHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecC
Q 015610 1 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la-~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
||+++|..|+ ..|++|+.||+++..... .+ +....++ +.+++||+|+.++|
T Consensus 157 IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--------------~~-------------~~~~~~l~ell~~aDvIvl~lP 209 (332)
T PRK08605 157 IGLAVAKIFAKGYGSDVVAYDPFPNAKAA--------------TY-------------VDYKDTIEEAVEGADIVTLHMP 209 (332)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccHhHH--------------hh-------------ccccCCHHHHHHhCCEEEEeCC
Confidence 6889999985 458899999998754210 01 1123345 56789999999999
Q ss_pred CChHHHHHHH-HHHHhhCCCCcEEEecCCCCC--HHHHHhhcC
Q 015610 79 ENVSLKQQIF-ADLEKYCPPHCILASNTSTID--LNLIGERTY 118 (403)
Q Consensus 79 e~~~~K~~~~-~~l~~~~~~~~ilasntStl~--~~~la~~~~ 118 (403)
.....+. ++ .++.+.++++++|...+.+.. ...|.+.+.
T Consensus 210 ~t~~t~~-li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~ 251 (332)
T PRK08605 210 ATKYNHY-LFNADLFKHFKKGAVFVNCARGSLVDTKALLDALD 251 (332)
T ss_pred CCcchhh-hcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 9987765 44 457778999999975443333 336666664
No 145
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=96.78 E-value=0.063 Score=50.38 Aligned_cols=107 Identities=19% Similarity=0.225 Sum_probs=75.4
Q ss_pred ccccc-cccccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhh---cCCCC-cEEEEecCC-C
Q 015610 58 LTGVL-DYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER---TYSKD-RIVGAHFFS-P 131 (403)
Q Consensus 58 i~~~~-~~~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~---~~~~~-r~ig~hf~~-P 131 (403)
++.++ |.|+++++|++|.=.|.-. .-..+.+++.+.+++++||+ ||-|+|+..+... +.+.. .+..+|+-. |
T Consensus 127 vkVtsDD~EAv~~aei~I~ftPfG~-~q~~Iikkii~~lpEgAII~-~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaVP 204 (340)
T TIGR01723 127 LKVTTDDREAVEDADIIITWLPKGN-KQPDIIKKFIDDIPEGAIVT-HACTIPTTKFAKIFEDLGREDLNVTSYHPGCVP 204 (340)
T ss_pred ceEecCcHHHhcCCCEEEEEcCCCC-CchHHHHHHHhhCCCCCEEe-ccccCChHHHHHHHHhhCcccCCeeccCCCCCC
Confidence 44444 4599999999999999874 12567788889999999997 5777887755444 44322 344445554 3
Q ss_pred CCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCCcEEe
Q 015610 132 AHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 168 (403)
Q Consensus 132 ~~~~~lvevv~~~~t~~e~~~~~~~l~~~lGk~~v~~ 168 (403)
-..+ -+-|+.+ ..++|.++++.++.+..|+.+..+
T Consensus 205 gt~~-q~Yi~eg-yAtEEqI~klveL~~sa~k~ay~~ 239 (340)
T TIGR01723 205 EMKG-QVYIAEG-YASEEAVNKLYELGKKARGKAFKM 239 (340)
T ss_pred CCCC-ceEeecc-cCCHHHHHHHHHHHHHhCCCeeec
Confidence 2232 2334444 578999999999999999999987
No 146
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=96.69 E-value=0.0097 Score=62.09 Aligned_cols=119 Identities=16% Similarity=0.037 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||+.+|..+...|++|+.||+.... +.+. +.|. ....++ +.+++||+|+.++|-
T Consensus 149 IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g~-------------~~~~~l~ell~~aDvV~l~lPl 203 (525)
T TIGR01327 149 IGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QLGV-------------ELVDDLDELLARADFITVHTPL 203 (525)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcCC-------------EEcCCHHHHHhhCCEEEEccCC
Confidence 6899999999999999999985321 1111 1221 223345 567899999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHHhhcC-CCCcEEEEecCC--CCC-----CCCeEEEecCC
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY-SKDRIVGAHFFS--PAH-----VMPLLEIVRTN 144 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntSt--l~~~~la~~~~-~~~r~ig~hf~~--P~~-----~~~lvevv~~~ 144 (403)
+.+.+.-+=++..+.+++++++...+-+ +.-..|.+.+. ..-+..++.-|. |+. ..+-|-+.||-
T Consensus 204 t~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHi 278 (525)
T TIGR01327 204 TPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHL 278 (525)
T ss_pred ChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCc
Confidence 9888776656677789999999743333 44457777774 333445565452 543 23556666663
No 147
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=96.56 E-value=0.007 Score=58.53 Aligned_cols=100 Identities=20% Similarity=0.276 Sum_probs=62.7
Q ss_pred ChHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecC
Q 015610 1 MGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~ 78 (403)
.|..+|..++..| .+++++|++++.++.....+......+ . ..++..+.+++++++||+||-++.
T Consensus 9 VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~---~----------~~~i~~~~~~~~l~~aDiVIitag 75 (300)
T cd00300 9 VGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL---A----------TGTIVRGGDYADAADADIVVITAG 75 (300)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc---C----------CCeEEECCCHHHhCCCCEEEEcCC
Confidence 4889999999988 589999999887654433232221110 0 113433456789999999999887
Q ss_pred C--------------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhh
Q 015610 79 E--------------NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER 116 (403)
Q Consensus 79 e--------------~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~ 116 (403)
- +..+-+++..++.+.+ |++++..-| -|.+-++..
T Consensus 76 ~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~s--NP~d~~~~~ 124 (300)
T cd00300 76 APRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVS--NPVDILTYV 124 (300)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcc--ChHHHHHHH
Confidence 4 2223444555677777 677766433 466544443
No 148
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.54 E-value=0.0049 Score=59.77 Aligned_cols=100 Identities=18% Similarity=0.181 Sum_probs=61.2
Q ss_pred ChHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecC
Q 015610 1 MGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~ 78 (403)
+|+.+|..|+..| ++|+++|++++.++.....+...... .+. ..++ ...+++++++||+||-+..
T Consensus 11 vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~---~~~---------~~~i-~~~~~~~l~~aDIVIitag 77 (306)
T cd05291 11 VGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAF---LPS---------PVKI-KAGDYSDCKDADIVVITAG 77 (306)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhc---cCC---------CeEE-EcCCHHHhCCCCEEEEccC
Confidence 5889999999999 58999999998865543323222100 010 0012 2345678899999999987
Q ss_pred CC--------------hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhh
Q 015610 79 EN--------------VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER 116 (403)
Q Consensus 79 e~--------------~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~ 116 (403)
.. ..+-+.+..++.+.++ ++++..-| -|++-++..
T Consensus 78 ~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vivvs--NP~d~~~~~ 126 (306)
T cd05291 78 APQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFLVAS--NPVDVITYV 126 (306)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEec--ChHHHHHHH
Confidence 62 2234455556777665 66665433 466544443
No 149
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=96.51 E-value=0.37 Score=48.83 Aligned_cols=173 Identities=10% Similarity=0.058 Sum_probs=101.5
Q ss_pred hHHHHHHHHHCCCceE------EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEE
Q 015610 2 GSGIATALILSNYPVI------LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIE 75 (403)
Q Consensus 2 G~~iA~~la~~G~~V~------l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVie 75 (403)
|..-|+++...|++|+ ..|.+.+..+++. +.|- +..+..++++.||+|+-
T Consensus 48 G~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~dGF-------------~v~~~~Ea~~~ADvVvi 103 (487)
T PRK05225 48 GLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------ENGF-------------KVGTYEELIPQADLVIN 103 (487)
T ss_pred HHHHhCCCccccceeEEeccccccccccchHHHHH-----------hcCC-------------ccCCHHHHHHhCCEEEE
Confidence 5666777777788888 4444455555543 3342 22223377899999999
Q ss_pred ecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCC-------------CCCeE-EEe
Q 015610 76 AIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH-------------VMPLL-EIV 141 (403)
Q Consensus 76 av~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~-------------~~~lv-evv 141 (403)
.+|.. . ...++.++.+.+++++++.-+. ++.+..- .. .|..-+-+-..+|-. +.|.+ -|-
T Consensus 104 LlPDt-~-q~~v~~~i~p~LK~Ga~L~fsH-GFni~~~--~i-~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~ 177 (487)
T PRK05225 104 LTPDK-Q-HSDVVRAVQPLMKQGAALGYSH-GFNIVEV--GE-QIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVH 177 (487)
T ss_pred cCChH-H-HHHHHHHHHhhCCCCCEEEecC-CceeeeC--ce-eCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEe
Confidence 99999 3 7788889999999999998533 5554321 11 122223333334432 22333 333
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCC---cEEe--c-cc-chhhhhhh-HHHH---HHHH--HHHHHcCCCHHHHHHHH
Q 015610 142 RTNQTSPQVIVDLLDIGKKIKKT---PIVV--G-NC-TGFAVNRM-FFPY---TQAA--FLLVERGTDLYLIDRAI 204 (403)
Q Consensus 142 ~~~~t~~e~~~~~~~l~~~lGk~---~v~~--~-d~-~G~i~nRi-~~~~---~~Ea--~~l~~~G~~~~~iD~a~ 204 (403)
+-...+-...+.+..+...+|.. ++.. . ++ .-....|. +... ..++ -.++++|++|+..-..+
T Consensus 178 ~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A~k~~ 253 (487)
T PRK05225 178 PENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYAEKLI 253 (487)
T ss_pred ecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 21345667899999999999976 3332 1 11 11122232 2222 2233 36788999998876433
No 150
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.51 E-value=0.027 Score=48.13 Aligned_cols=108 Identities=20% Similarity=0.278 Sum_probs=62.9
Q ss_pred hHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCC
Q 015610 2 GSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 79 (403)
Q Consensus 2 G~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e 79 (403)
|..+|..++..|+ +++++|++++.++.-...+......... -.++ ...+++++++||+||-+.-.
T Consensus 13 G~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~------------~~~i-~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 13 GSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPS------------PVRI-TSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp HHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTE------------EEEE-EESSGGGGTTESEEEETTST
T ss_pred HHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccc------------cccc-ccccccccccccEEEEeccc
Confidence 7889999998876 8999999988654432222221111100 0122 23567999999999988744
Q ss_pred C--------------hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhc----C-CCCcEEE
Q 015610 80 N--------------VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT----Y-SKDRIVG 125 (403)
Q Consensus 80 ~--------------~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~----~-~~~r~ig 125 (403)
. ..+-+++..++.+.+ |++++..-| -|++-++..+ . .|+|++|
T Consensus 80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvt--NPvd~~t~~~~~~s~~~~~kviG 141 (141)
T PF00056_consen 80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVT--NPVDVMTYVAQKYSGFPPNKVIG 141 (141)
T ss_dssp SSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-S--SSHHHHHHHHHHHHTSSGGGEEE
T ss_pred cccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeC--CcHHHHHHHHHHhhCcCcccCcC
Confidence 2 123333444577776 666666543 3665333332 2 4556665
No 151
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.50 E-value=0.012 Score=61.52 Aligned_cols=118 Identities=17% Similarity=0.091 Sum_probs=79.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||+.+|..+...|++|+.||++... +... +.|. ... ++ +.++.||+|+.++|-
T Consensus 151 IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g~-------------~~~-~l~ell~~aDiV~l~lP~ 204 (526)
T PRK13581 151 IGSEVAKRAKAFGMKVIAYDPYISP-ERAA-----------QLGV-------------ELV-SLDELLARADFITLHTPL 204 (526)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcCC-------------EEE-cHHHHHhhCCEEEEccCC
Confidence 6899999999999999999986432 1110 1221 122 44 567899999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHHhhcC-CCCcEEEEecCC--CCC-----CCCeEEEecCC
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY-SKDRIVGAHFFS--PAH-----VMPLLEIVRTN 144 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntSt--l~~~~la~~~~-~~~r~ig~hf~~--P~~-----~~~lvevv~~~ 144 (403)
+.+.+.-+-++..+.+++++++...+-+ +.-..|.+.+. .+-+-.++.-|. |+. ..+-|.+.||-
T Consensus 205 t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHi 279 (526)
T PRK13581 205 TPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHL 279 (526)
T ss_pred ChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCcc
Confidence 9888776657788889999999743333 44447777774 333445555553 443 24556677763
No 152
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=96.35 E-value=0.008 Score=52.15 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=57.2
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~-~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e 79 (403)
+|...|++|..+|++|++-.+..+ ..+++. +.|. +..+..|+++.+|+|+..+|+
T Consensus 15 QG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-----------~~Gf-------------~v~~~~eAv~~aDvV~~L~PD 70 (165)
T PF07991_consen 15 QGHAHALNLRDSGVNVIVGLREGSASWEKAK-----------ADGF-------------EVMSVAEAVKKADVVMLLLPD 70 (165)
T ss_dssp HHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-----------HTT--------------ECCEHHHHHHC-SEEEE-S-H
T ss_pred HHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-----------HCCC-------------eeccHHHHHhhCCEEEEeCCh
Confidence 378899999999999999998877 555553 5563 233334889999999999997
Q ss_pred ChHHHHHHH-HHHHhhCCCCcEEEecCCCCCH
Q 015610 80 NVSLKQQIF-ADLEKYCPPHCILASNTSTIDL 110 (403)
Q Consensus 80 ~~~~K~~~~-~~l~~~~~~~~ilasntStl~~ 110 (403)
.. -.++| .+|.+.++++..+.. +.++.+
T Consensus 71 ~~--q~~vy~~~I~p~l~~G~~L~f-ahGfni 99 (165)
T PF07991_consen 71 EV--QPEVYEEEIAPNLKPGATLVF-AHGFNI 99 (165)
T ss_dssp HH--HHHHHHHHHHHHS-TT-EEEE-SSSHHH
T ss_pred HH--HHHHHHHHHHhhCCCCCEEEe-CCcchh
Confidence 74 66777 679999999999985 445444
No 153
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.32 E-value=0.0062 Score=58.44 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||.+||.+|.++|+.|+++++....++ +.++.||+||.|++..
T Consensus 171 vG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~ADIVIsavg~~ 213 (301)
T PRK14194 171 VGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQADIVVAAVGRP 213 (301)
T ss_pred cHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhcCCEEEEecCCh
Confidence 899999999999999999986543111 3357899999999998
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecC
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNT 105 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasnt 105 (403)
..++..+ +++++++.+.+
T Consensus 214 ~~v~~~~-------ik~GaiVIDvg 231 (301)
T PRK14194 214 RLIDADW-------LKPGAVVIDVG 231 (301)
T ss_pred hcccHhh-------ccCCcEEEEec
Confidence 7776654 78999998754
No 154
>PLN02928 oxidoreductase family protein
Probab=96.30 E-value=0.028 Score=55.52 Aligned_cols=130 Identities=11% Similarity=0.012 Sum_probs=77.9
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||+.+|..+...|.+|+.||++....... ..+ +................++ +.++.||+|+.++|-
T Consensus 170 IG~~vA~~l~afG~~V~~~dr~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPl 236 (347)
T PLN02928 170 IGIELAKRLRPFGVKLLATRRSWTSEPED------------GLL-IPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTL 236 (347)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCChhhhh------------hhc-cccccccccccccCcccCHHHHHhhCCEEEECCCC
Confidence 68899999999999999999974321110 000 0000000000000012244 667999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHHhhcCC-CCcEEEEecCC--CCC------CCCeEEEecC
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS-KDRIVGAHFFS--PAH------VMPLLEIVRT 143 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntSt--l~~~~la~~~~~-~~r~ig~hf~~--P~~------~~~lvevv~~ 143 (403)
+.+.+.-+=++..+.++++++|+..+-+ +.-+.|.+.+.. .-+..++--|. |.. ..+-+.+.|+
T Consensus 237 t~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPH 311 (347)
T PLN02928 237 TKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPH 311 (347)
T ss_pred ChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCc
Confidence 9887666656788889999999843333 445578777752 22345566553 421 2355556665
No 155
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=96.26 E-value=0.013 Score=56.86 Aligned_cols=97 Identities=14% Similarity=0.122 Sum_probs=57.6
Q ss_pred hHHHHHHHHHCCCc--eEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEec
Q 015610 2 GSGIATALILSNYP--VILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAI 77 (403)
Q Consensus 2 G~~iA~~la~~G~~--V~l~d~~~--~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav 77 (403)
|..+|..++..|+. |+++|+++ +.++.....+. +.+...+. ..+++.+++++++++||+||-|+
T Consensus 13 G~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~---d~~~~~~~---------~~~i~~~~d~~~l~~aDiViita 80 (309)
T cd05294 13 GSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY---DALAAAGI---------DAEIKISSDLSDVAGSDIVIITA 80 (309)
T ss_pred HHHHHHHHHhCCCCCEEEEEECcccccccccccchhh---hchhccCC---------CcEEEECCCHHHhCCCCEEEEec
Confidence 78899999999984 99999954 33322221111 11111111 11455556678899999999998
Q ss_pred CC------C-h-------HHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 015610 78 IE------N-V-------SLKQQIFADLEKYCPPHCILASNTSTIDLN 111 (403)
Q Consensus 78 ~e------~-~-------~~K~~~~~~l~~~~~~~~ilasntStl~~~ 111 (403)
.- + . ++-+.+...|.+.+ +++++...++..++-
T Consensus 81 g~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd~~ 127 (309)
T cd05294 81 GVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVDVM 127 (309)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHHH
Confidence 62 1 1 22334444567666 567776667655543
No 156
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.18 E-value=0.26 Score=47.79 Aligned_cols=156 Identities=14% Similarity=0.087 Sum_probs=90.2
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||+-+|..|+++|++|+++-+++. +++.+ +.|..-...............+.+.+..+|+||-++---
T Consensus 11 vG~l~g~~L~~~g~~V~~~~R~~~-~~~l~-----------~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~ 78 (307)
T COG1893 11 IGSLLGARLAKAGHDVTLLVRSRR-LEALK-----------KKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY 78 (307)
T ss_pred HHHHHHHHHHhCCCeEEEEecHHH-HHHHH-----------hCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc
Confidence 789999999999998988888886 55553 334321111110011111233346678999999987433
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHH-HHhhcCCCCcEEEEecCCCCCCC---------CeEEEecCCCCCHHH
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTSTIDLNL-IGERTYSKDRIVGAHFFSPAHVM---------PLLEIVRTNQTSPQV 150 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntStl~~~~-la~~~~~~~r~ig~hf~~P~~~~---------~lvevv~~~~t~~e~ 150 (403)
. -.+.+..+.+.++++|+|.+.--++...+ +.+......-+.|+-+..-.... .-+.+-.-....++.
T Consensus 79 q--~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~~~ 156 (307)
T COG1893 79 Q--LEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDEL 156 (307)
T ss_pred c--HHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCchHH
Confidence 2 34667789999999998886666666555 44444433234455444222111 111111112223467
Q ss_pred HHHHHHHHHHcCCCcEEecc
Q 015610 151 IVDLLDIGKKIKKTPIVVGN 170 (403)
Q Consensus 151 ~~~~~~l~~~lGk~~v~~~d 170 (403)
++.+.+.++..|....+..|
T Consensus 157 ~~~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 157 VKALAELFKEAGLEVELHPD 176 (307)
T ss_pred HHHHHHHHHhCCCCeEEcHH
Confidence 77777777777766665544
No 157
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.93 E-value=0.016 Score=55.71 Aligned_cols=80 Identities=21% Similarity=0.213 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||..+|..|...|.+|+++|++++.++++. +.|.. .+ ...++ +.++++|+||.++|.
T Consensus 162 iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~~----------~~-~~~~l~~~l~~aDiVint~P~ 219 (287)
T TIGR02853 162 TGMTIARTFSALGARVFVGARSSADLARIT-----------EMGLI----------PF-PLNKLEEKVAEIDIVINTIPA 219 (287)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCCe----------ee-cHHHHHHHhccCCEEEECCCh
Confidence 689999999999999999999998755432 22311 01 11222 456899999999987
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
..- -++..+.+++++++.+.+|.
T Consensus 220 ~ii-----~~~~l~~~k~~aliIDlas~ 242 (287)
T TIGR02853 220 LVL-----TADVLSKLPKHAVIIDLASK 242 (287)
T ss_pred HHh-----CHHHHhcCCCCeEEEEeCcC
Confidence 531 12344567888988865554
No 158
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.71 E-value=0.019 Score=55.76 Aligned_cols=97 Identities=24% Similarity=0.322 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecC
Q 015610 1 MGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~ 78 (403)
+|.++|..++..| .+|.++|++++.++.....+. ....+.. . ..+ .+.+++++++||+||-|++
T Consensus 11 VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~-------~~~~~~~-~-----~~i-~~~d~~~l~~aDiViita~ 76 (308)
T cd05292 11 VGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLA-------HGTPFVK-P-----VRI-YAGDYADCKGADVVVITAG 76 (308)
T ss_pred HHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHH-------ccccccC-C-----eEE-eeCCHHHhCCCCEEEEccC
Confidence 4889999999999 589999999887642211111 1101100 0 122 3456788999999999998
Q ss_pred CC--------------hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHH
Q 015610 79 EN--------------VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 114 (403)
Q Consensus 79 e~--------------~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la 114 (403)
.. ..+-+++..+|.+..+. +++.--| -|.+-++
T Consensus 77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~-giiiv~t--NP~d~~~ 123 (308)
T cd05292 77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPD-AILLVVT--NPVDVLT 123 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEec--CcHHHHH
Confidence 63 22334455567776655 5544322 3554343
No 159
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=95.65 E-value=0.091 Score=51.31 Aligned_cols=116 Identities=19% Similarity=0.160 Sum_probs=79.2
Q ss_pred ChHHHHHHHHHCCCceEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNYPVILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~-~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
+|+.+|..+...|++|+.||+ .+...+.. .+. ....++ +.++.||+|...+|
T Consensus 153 IG~~va~~l~afgm~v~~~d~~~~~~~~~~-------------~~~-------------~~~~~Ld~lL~~sDiv~lh~P 206 (324)
T COG0111 153 IGRAVAKRLKAFGMKVIGYDPYSPRERAGV-------------DGV-------------VGVDSLDELLAEADILTLHLP 206 (324)
T ss_pred HHHHHHHHHHhCCCeEEEECCCCchhhhcc-------------ccc-------------eecccHHHHHhhCCEEEEcCC
Confidence 488899999889999999999 44432221 121 224455 55799999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEecCCC---CCHHHHHhhcCC-CCcEEEEecCC--CCC------CCCeEEEecC
Q 015610 79 ENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFFS--PAH------VMPLLEIVRT 143 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~~~~~ilasntSt---l~~~~la~~~~~-~~r~ig~hf~~--P~~------~~~lvevv~~ 143 (403)
...+.+.-+=++..+.+++++|+. |+|- +.-..|.+.++. .-+-.++.-|. |+. ..+-|-+.||
T Consensus 207 lT~eT~g~i~~~~~a~MK~gailI-N~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPH 282 (324)
T COG0111 207 LTPETRGLINAEELAKMKPGAILI-NAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPH 282 (324)
T ss_pred CCcchhcccCHHHHhhCCCCeEEE-ECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCc
Confidence 999877666677778899999886 6654 445577777743 23445666663 433 2455666665
No 160
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.59 E-value=0.14 Score=49.55 Aligned_cols=164 Identities=12% Similarity=0.004 Sum_probs=87.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHhhcCccccccccccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e 79 (403)
||+-+|..|+++|++|++++++++.++..++ +.|. +.... ....-+.. ..+.+....+|+||-|+=-
T Consensus 13 iG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~----------~~Gl~i~~~g-~~~~~~~~-~~~~~~~~~~D~viv~vK~ 80 (305)
T PRK05708 13 LGSLWACRLARAGLPVRLILRDRQRLAAYQQ----------AGGLTLVEQG-QASLYAIP-AETADAAEPIHRLLLACKA 80 (305)
T ss_pred HHHHHHHHHHhCCCCeEEEEechHHHHHHhh----------cCCeEEeeCC-cceeeccC-CCCcccccccCEEEEECCH
Confidence 6888999999999999999999877665531 1121 10000 00000111 1122335678999999754
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH-HHHhhcCCCCcEE-EEecC-----CCCC--CCCeEEEecCCCCCHHH
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIV-GAHFF-----SPAH--VMPLLEIVRTNQTSPQV 150 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntStl~~~-~la~~~~~~~r~i-g~hf~-----~P~~--~~~lvevv~~~~t~~e~ 150 (403)
. +++ ..++.+.+.+.+++++.+.--++... .+.+.+.. ++++ |.-++ .|-+ ....-.+.-|.. +.+.
T Consensus 81 ~-~~~-~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~-~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~-~~~~ 156 (305)
T PRK05708 81 Y-DAE-PAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPH-ARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDP-RNPT 156 (305)
T ss_pred H-hHH-HHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCC-CcEEEEEeeeceecCCCCEEEEeceEEEEEcCC-CCcc
Confidence 3 333 45677888899999887766666654 45555432 2333 33332 2321 001111112221 2234
Q ss_pred HHHHHHHHHHcCCCcEEecccchhhhhhhH
Q 015610 151 IVDLLDIGKKIKKTPIVVGNCTGFAVNRMF 180 (403)
Q Consensus 151 ~~~~~~l~~~lGk~~v~~~d~~G~i~nRi~ 180 (403)
.+.+.+++...|....+..|..+.+.+.++
T Consensus 157 ~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~ 186 (305)
T PRK05708 157 APAWLDDLREAGIPHEWTVDILTRLWRKLA 186 (305)
T ss_pred hHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Confidence 455666666666555544555554444443
No 161
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.51 E-value=0.045 Score=52.83 Aligned_cols=80 Identities=16% Similarity=0.220 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
+|..++..|...|.+|+++|+++++.+.+. +.|.. . + ...++ +.++++|+||.++|.
T Consensus 163 iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~-----------~~G~~-~---------~-~~~~l~~~l~~aDiVI~t~p~ 220 (296)
T PRK08306 163 TGMTLARTLKALGANVTVGARKSAHLARIT-----------EMGLS-P---------F-HLSELAEEVGKIDIIFNTIPA 220 (296)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCCe-e---------e-cHHHHHHHhCCCCEEEECCCh
Confidence 578899999999999999999988765542 23321 0 0 01122 456889999999985
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
.. +-++..+.++++++|.+..|.
T Consensus 221 ~~-----i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 221 LV-----LTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred hh-----hhHHHHHcCCCCcEEEEEccC
Confidence 32 223445567889999876654
No 162
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.43 E-value=0.025 Score=54.40 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHCCCceEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKE-VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d-~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e 79 (403)
||.+||.+|+++|+.|++|+ ++++- .+.++.||+||-|++.
T Consensus 170 mG~PmA~~L~~~g~tVtv~~~rT~~l--------------------------------------~e~~~~ADIVIsavg~ 211 (296)
T PRK14188 170 VGKPMAQLLLAANATVTIAHSRTRDL--------------------------------------PAVCRRADILVAAVGR 211 (296)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCCCH--------------------------------------HHHHhcCCEEEEecCC
Confidence 89999999999999999995 55421 0235679999999998
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
...++..+ +++++++.+.+.+
T Consensus 212 ~~~v~~~~-------lk~GavVIDvGin 232 (296)
T PRK14188 212 PEMVKGDW-------IKPGATVIDVGIN 232 (296)
T ss_pred hhhcchhe-------ecCCCEEEEcCCc
Confidence 87555443 7899999875543
No 163
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.38 E-value=0.041 Score=48.78 Aligned_cols=86 Identities=23% Similarity=0.291 Sum_probs=53.3
Q ss_pred ChHHHHHHHHHCCC-ceEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcccccc------------c
Q 015610 1 MGSGIATALILSNY-PVILKEVNE---KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD------------Y 64 (403)
Q Consensus 1 MG~~iA~~la~~G~-~V~l~d~~~---~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~------------~ 64 (403)
||+.+|.+|++.|. +++++|.+. +.+.+-. . ... +-|....+.....+.++....+ .
T Consensus 10 lGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~--~---~~~--~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~~~ 82 (174)
T cd01487 10 LGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQ--Y---FLS--QIGEPKVEALKENLREINPFVKIEAINIKIDENNL 82 (174)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccc--c---cHh--hCCChHHHHHHHHHHHHCCCCEEEEEEeecChhhH
Confidence 68999999999999 599999987 3333211 0 001 1232223333333333322111 1
Q ss_pred -cccCCCCeEEEecCCChHHHHHHHHHHHhh
Q 015610 65 -ESFKDVDMVIEAIIENVSLKQQIFADLEKY 94 (403)
Q Consensus 65 -~~~~~aDlVieav~e~~~~K~~~~~~l~~~ 94 (403)
+.++++|+||+| .++.+.|+.+.....+.
T Consensus 83 ~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 83 EGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred HHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 336889999999 78889998888877665
No 164
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.30 E-value=0.084 Score=51.19 Aligned_cols=183 Identities=16% Similarity=0.177 Sum_probs=110.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccc----cCCCCeEEEe
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES----FKDVDMVIEA 76 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----~~~aDlViea 76 (403)
||..++++.+.+|+.|.+|+|...+++..+.+-.+ |. .|....++|+ ++.--.||..
T Consensus 17 MGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak--------~~-----------~i~ga~S~ed~v~klk~PR~iill 77 (487)
T KOG2653|consen 17 MGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAK--------GT-----------KIIGAYSLEDFVSKLKKPRVIILL 77 (487)
T ss_pred hhhhhhhcccccCceEEEeccchHhHHHHHHHhhc--------CC-----------cccCCCCHHHHHHhcCCCcEEEEE
Confidence 89999999999999999999999998877532211 11 1223444432 3445556665
Q ss_pred cCCChHHHHHHHHHHHhhCCCCcEEEecC-CCCC-HHHHHhhcC-CCCcEEEEecCCC---CCCCCeEEEecCCCCCHHH
Q 015610 77 IIENVSLKQQIFADLEKYCPPHCILASNT-STID-LNLIGERTY-SKDRIVGAHFFSP---AHVMPLLEIVRTNQTSPQV 150 (403)
Q Consensus 77 v~e~~~~K~~~~~~l~~~~~~~~ilasnt-Stl~-~~~la~~~~-~~~r~ig~hf~~P---~~~~~lvevv~~~~t~~e~ 150 (403)
|---..+ -.++.+|.+++.++-||++.. |..+ .++=.+.+. .---|+|..---. ++.+| .+||| .++++
T Consensus 78 vkAG~pV-D~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP--SlMpG--g~~~A 152 (487)
T KOG2653|consen 78 VKAGAPV-DQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP--SLMPG--GSKEA 152 (487)
T ss_pred eeCCCcH-HHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC--ccCCC--CChHH
Confidence 5443332 356677888888888887644 2333 332223222 1112444432211 11234 35677 58999
Q ss_pred HHHHHHHHHHcCCC-----c--EEecc-cchhh----hhhh---HHHHHHHHHHHHHc--CCCHHHHHHHHHhc
Q 015610 151 IVDLLDIGKKIKKT-----P--IVVGN-CTGFA----VNRM---FFPYTQAAFLLVER--GTDLYLIDRAITKF 207 (403)
Q Consensus 151 ~~~~~~l~~~lGk~-----~--v~~~d-~~G~i----~nRi---~~~~~~Ea~~l~~~--G~~~~~iD~a~~~~ 207 (403)
...++.+++.+... | .++++ +.|.. -|-| =..++.||..++.. |++-++|-+++..+
T Consensus 153 wp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~W 226 (487)
T KOG2653|consen 153 WPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDW 226 (487)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 99999998875322 2 34565 45532 2333 14568999998876 56888888887443
No 165
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=95.27 E-value=0.096 Score=50.90 Aligned_cols=99 Identities=15% Similarity=0.078 Sum_probs=70.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
+|+.+|..+...|.+|..||+..... ..+ +. ..++ +.++.||+|+.++|-
T Consensus 156 IG~~vA~~~~~fgm~V~~~d~~~~~~---------------~~~-------------~~-~~~l~ell~~sDvv~lh~Pl 206 (311)
T PRK08410 156 IGKRVAKIAQAFGAKVVYYSTSGKNK---------------NEE-------------YE-RVSLEELLKTSDIISIHAPL 206 (311)
T ss_pred HHHHHHHHHhhcCCEEEEECCCcccc---------------ccC-------------ce-eecHHHHhhcCCEEEEeCCC
Confidence 37889988888899999999864210 111 11 1244 557899999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCC---CCHHHHHhhcC-CCCcEEEEecCC
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY-SKDRIVGAHFFS 130 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntSt---l~~~~la~~~~-~~~r~ig~hf~~ 130 (403)
+.+.+.-+=++..+.++|+++|. |+|- +.-+.|.+.+. .+-+ .++--|.
T Consensus 207 t~~T~~li~~~~~~~Mk~~a~lI-N~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~ 259 (311)
T PRK08410 207 NEKTKNLIAYKELKLLKDGAILI-NVGRGGIVNEKDLAKALDEKDIY-AGLDVLE 259 (311)
T ss_pred CchhhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCeE-EEEecCC
Confidence 98877666667788899999997 4543 45557888775 3334 6777663
No 166
>PRK04148 hypothetical protein; Provisional
Probab=95.26 E-value=0.096 Score=44.20 Aligned_cols=85 Identities=20% Similarity=0.164 Sum_probs=58.2
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCCh
Q 015610 2 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENV 81 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~~ 81 (403)
|..+|..|++.|++|+..|.++++++.+.+ .+. +...+.+ +..+++--+++|+|.+.=|...
T Consensus 28 G~~vA~~L~~~G~~ViaIDi~~~aV~~a~~-----------~~~------~~v~dDl-f~p~~~~y~~a~liysirpp~e 89 (134)
T PRK04148 28 YFKVAKKLKESGFDVIVIDINEKAVEKAKK-----------LGL------NAFVDDL-FNPNLEIYKNAKLIYSIRPPRD 89 (134)
T ss_pred CHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------hCC------eEEECcC-CCCCHHHHhcCCEEEEeCCCHH
Confidence 445888999999999999999999887742 221 1111222 2334455689999999877653
Q ss_pred HHHHHHHHHHHhhCCCCcEEEecCC
Q 015610 82 SLKQQIFADLEKYCPPHCILASNTS 106 (403)
Q Consensus 82 ~~K~~~~~~l~~~~~~~~ilasntS 106 (403)
-+.-+.+|.+.+..+.+|..-++
T Consensus 90 --l~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 90 --LQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred --HHHHHHHHHHHcCCCEEEEcCCC
Confidence 34444568888899999975443
No 167
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.18 E-value=0.097 Score=52.88 Aligned_cols=100 Identities=21% Similarity=0.227 Sum_probs=68.9
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
+|+.+|..+...|.+|+.||+++.. ..+. .....++ +.++.||+|+.++|-
T Consensus 162 IG~~vA~~~~~fGm~V~~~d~~~~~----------------~~~~------------~~~~~~l~ell~~sDiVslh~Pl 213 (409)
T PRK11790 162 IGTQLSVLAESLGMRVYFYDIEDKL----------------PLGN------------ARQVGSLEELLAQSDVVSLHVPE 213 (409)
T ss_pred HHHHHHHHHHHCCCEEEEECCCccc----------------ccCC------------ceecCCHHHHHhhCCEEEEcCCC
Confidence 4888999998899999999986421 0111 1123355 557999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCC---CCHHHHHhhcCC-CCcEEEEecC
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF 129 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntSt---l~~~~la~~~~~-~~r~ig~hf~ 129 (403)
+.+.+.-+=++..+.+++++++. |+|- +.-..|.+.+.. +-+-.++--|
T Consensus 214 t~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gaalDVf 266 (409)
T PRK11790 214 TPSTKNMIGAEELALMKPGAILI-NASRGTVVDIDALADALKSGHLAGAAIDVF 266 (409)
T ss_pred ChHHhhccCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHHcCCceEEEEcCC
Confidence 98877666567788899999997 5553 445577777742 2233445433
No 168
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.16 E-value=0.055 Score=52.61 Aligned_cols=100 Identities=17% Similarity=0.222 Sum_probs=57.6
Q ss_pred ChHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~ 78 (403)
.|..+|..++..|. +++|+|++++.++.....+.... ... ....++.+.+++++++||+||-+.-
T Consensus 14 VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~------~~~-------~~~~v~~~~dy~~~~~adivvitaG 80 (312)
T cd05293 14 VGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGS------AFL-------KNPKIEADKDYSVTANSKVVIVTAG 80 (312)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhh------ccC-------CCCEEEECCCHHHhCCCCEEEECCC
Confidence 48889999998887 79999999875433221121110 000 0124555578888999999998654
Q ss_pred CCh--------------HHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhh
Q 015610 79 ENV--------------SLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER 116 (403)
Q Consensus 79 e~~--------------~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~ 116 (403)
... .+-+++..++.+.+ |++++..-| -|.+-++..
T Consensus 81 ~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvs--NP~d~~t~~ 129 (312)
T cd05293 81 ARQNEGESRLDLVQRNVDIFKGIIPKLVKYS-PNAILLVVS--NPVDIMTYV 129 (312)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEcc--ChHHHHHHH
Confidence 311 12233334566674 555555322 355544433
No 169
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=95.14 E-value=0.025 Score=51.53 Aligned_cols=53 Identities=25% Similarity=0.226 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhcCCCCCCCcHHHHHHH
Q 015610 302 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADS 355 (403)
Q Consensus 302 ~~~i~~r~~~~~~~ea~~~l~egv~~~~~diD~~~~~g~gfp~~~gGp~~~~d~ 355 (403)
.|+.+||++.+++||.-++++.|+. +..|+|..|..|+|-+----||++.+-.
T Consensus 188 ~Gf~lnriq~Ailne~wrLvasGil-~v~dvD~VmS~GLG~RYAflG~lET~HL 240 (313)
T KOG2305|consen 188 LGFALNRIQYAILNETWRLVASGIL-NVNDVDAVMSAGLGPRYAFLGPLETAHL 240 (313)
T ss_pred ccceeccccHHHHHHHHHHHHccCc-chhhHHHHHhcCCCcchhcccchhhhhc
Confidence 4889999999999999999999999 7999999999999954333489987764
No 170
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.99 E-value=0.069 Score=47.44 Aligned_cols=104 Identities=18% Similarity=0.133 Sum_probs=68.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
+|+.+|..+...|.+|+.||++........ ..+ . ...++ +.++.||+|+.++|-
T Consensus 47 IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~~~-------------~-~~~~l~ell~~aDiv~~~~pl 101 (178)
T PF02826_consen 47 IGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------EFG-------------V-EYVSLDELLAQADIVSLHLPL 101 (178)
T ss_dssp HHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------HTT-------------E-EESSHHHHHHH-SEEEE-SSS
T ss_pred CcCeEeeeeecCCceeEEecccCChhhhcc-----------ccc-------------c-eeeehhhhcchhhhhhhhhcc
Confidence 388999999999999999999998754221 112 1 12344 557889999999998
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHHhhcCC-CCcEEEEecC
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS-KDRIVGAHFF 129 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntSt--l~~~~la~~~~~-~~r~ig~hf~ 129 (403)
+.+.+.-+=++..+.+++++++...+-+ +.-+.|.+.++. +-+-.++--|
T Consensus 102 t~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~ 154 (178)
T PF02826_consen 102 TPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVF 154 (178)
T ss_dssp STTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-
T ss_pred ccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECC
Confidence 8776665556778889999999843333 444577777743 3344555544
No 171
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=94.91 E-value=0.04 Score=52.37 Aligned_cols=107 Identities=14% Similarity=0.135 Sum_probs=62.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||++++..|+..|++|+++|+++++++...+.+. +.+... ....+.....++|+||.|+|-.
T Consensus 128 ~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~-------~~~~~~-----------~~~~~~~~~~~~DivInatp~g 189 (270)
T TIGR00507 128 AARAVALPLLKADCNVIIANRTVSKAEELAERFQ-------RYGEIQ-----------AFSMDELPLHRVDLIINATSAG 189 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh-------hcCceE-----------EechhhhcccCccEEEECCCCC
Confidence 5889999999999999999999987665433221 112110 0011112345799999999975
Q ss_pred hH--HHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCC
Q 015610 81 VS--LKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSP 131 (403)
Q Consensus 81 ~~--~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P 131 (403)
+. +....+ ..+.+++++++.+.......+.+.+..+. .|.++.++
T Consensus 190 m~~~~~~~~~--~~~~l~~~~~v~D~~y~p~~T~ll~~A~~----~G~~~vdG 236 (270)
T TIGR00507 190 MSGNIDEPPV--PAEKLKEGMVVYDMVYNPGETPFLAEAKS----LGTKTIDG 236 (270)
T ss_pred CCCCCCCCCC--CHHHcCCCCEEEEeccCCCCCHHHHHHHH----CCCeeeCC
Confidence 31 111011 12346778888876555444556555432 25555554
No 172
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.82 E-value=0.07 Score=51.95 Aligned_cols=98 Identities=17% Similarity=0.205 Sum_probs=58.3
Q ss_pred hHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCC
Q 015610 2 GSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 79 (403)
Q Consensus 2 G~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e 79 (403)
|..+|..++..|. ++.|+|++++.++.-.-.++...... . ..+++ +.+++++++||+||-+.-.
T Consensus 18 G~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~--~-----------~~~i~-~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 18 GSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT--S-----------PTKIY-AGDYSDCKDADLVVITAGA 83 (315)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc--C-----------CeEEE-eCCHHHhCCCCEEEEecCC
Confidence 7889999999998 89999999887654432232221100 0 01232 4567899999999997654
Q ss_pred --------------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhh
Q 015610 80 --------------NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER 116 (403)
Q Consensus 80 --------------~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~ 116 (403)
+..+-+++..++.+.. |++++.. .| -|.+-++..
T Consensus 84 ~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~viv-vs-NP~d~~~~~ 131 (315)
T PRK00066 84 PQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLV-AS-NPVDILTYA 131 (315)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE-cc-CcHHHHHHH
Confidence 1222334444455554 5666653 32 465544433
No 173
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=94.81 E-value=1.6 Score=39.76 Aligned_cols=98 Identities=18% Similarity=0.209 Sum_probs=68.5
Q ss_pred cccccccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhh---cCC-CCcEEEEecCC-CCCCC
Q 015610 61 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER---TYS-KDRIVGAHFFS-PAHVM 135 (403)
Q Consensus 61 ~~~~~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~---~~~-~~r~ig~hf~~-P~~~~ 135 (403)
+++.+++.++|+||.=.|-.- +.-.++.++.+-+++++|++ ++.|++.+.+.+. +.+ .-++-..|+-. |-..+
T Consensus 131 tddreavedad~iitwlpkg~-~qpdiikkfiddipegaivt-hactipttkf~kifed~gredlnvtsyhpg~vpemkg 208 (343)
T COG4074 131 TDDREAVEDADMIITWLPKGG-VQPDIIKKFIDDIPEGAIVT-HACTIPTTKFKKIFEDMGREDLNVTSYHPGTVPEMKG 208 (343)
T ss_pred cCcHhhhcCCCeEEEeccCCC-CCccHHHHHHhcCCCCceEe-eecccchHHHHHHHHHhCccccceeccCCCCCccccC
Confidence 344599999999999998653 45567788777889999996 5778888855544 332 12455667765 43333
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHcC
Q 015610 136 PLLEIVRTNQTSPQVIVDLLDIGKKIK 162 (403)
Q Consensus 136 ~lvevv~~~~t~~e~~~~~~~l~~~lG 162 (403)
-|-|..| ..|+++++.+.++.+...
T Consensus 209 -qvyiaeg-yaseeavn~lyelg~kar 233 (343)
T COG4074 209 -QVYIAEG-YASEEAVNALYELGEKAR 233 (343)
T ss_pred -cEEEecc-cccHHHHHHHHHHHHHhh
Confidence 4555555 579999999999887643
No 174
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.79 E-value=0.13 Score=43.96 Aligned_cols=105 Identities=22% Similarity=0.186 Sum_probs=63.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHhhcCccccccc-cccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
||.-+|..|+++|++|+++++++ .++... +.|. ++..+-+..........+. +....+|+||-|+-
T Consensus 9 iG~~~a~~L~~~g~~V~l~~r~~-~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 9 IGSLYAARLAQAGHDVTLVSRSP-RLEAIK-----------EQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp HHHHHHHHHHHTTCEEEEEESHH-HHHHHH-----------HHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred HHHHHHHHHHHCCCceEEEEccc-cHHhhh-----------heeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 68899999999999999999999 655532 2332 1100000000000001111 24578999999986
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH-HHHhhcCC
Q 015610 79 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYS 119 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~-~la~~~~~ 119 (403)
-.. + ..++..+.+.+++++.|.+-.-++... .+.+....
T Consensus 77 a~~-~-~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~ 116 (151)
T PF02558_consen 77 AYQ-L-EQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPR 116 (151)
T ss_dssp GGG-H-HHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTG
T ss_pred ccc-h-HHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCC
Confidence 543 3 346677999999997777666677755 44445433
No 175
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.70 E-value=0.055 Score=51.63 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||.+||..|.++|+.|+++.-.. .++ +.+++||+||.|++.
T Consensus 170 vG~Pla~lL~~~gatVtv~~s~t--------------------------------------~~l~~~~~~ADIVI~avg~ 211 (284)
T PRK14179 170 VGKPMAQLLLDKNATVTLTHSRT--------------------------------------RNLAEVARKADILVVAIGR 211 (284)
T ss_pred CcHHHHHHHHHCCCEEEEECCCC--------------------------------------CCHHHHHhhCCEEEEecCc
Confidence 89999999999999999983111 122 346789999999998
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
...++..+ +++++++.+.+.+
T Consensus 212 ~~~v~~~~-------ik~GavVIDvgin 232 (284)
T PRK14179 212 GHFVTKEF-------VKEGAVVIDVGMN 232 (284)
T ss_pred cccCCHHH-------ccCCcEEEEecce
Confidence 87776654 8899999975533
No 176
>PRK06932 glycerate dehydrogenase; Provisional
Probab=94.55 E-value=0.23 Score=48.39 Aligned_cols=98 Identities=16% Similarity=0.153 Sum_probs=68.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
+|+.+|..+...|.+|+.||+.... .. ..+ ..++ +.++.||+|+.++|-
T Consensus 158 IG~~va~~l~~fg~~V~~~~~~~~~--~~------------~~~----------------~~~l~ell~~sDiv~l~~Pl 207 (314)
T PRK06932 158 LGTEVGRLAQALGMKVLYAEHKGAS--VC------------REG----------------YTPFEEVLKQADIVTLHCPL 207 (314)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccc--cc------------ccc----------------cCCHHHHHHhCCEEEEcCCC
Confidence 4788998888889999999975321 00 000 1234 557899999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCC---CCHHHHHhhcC-CCCcEEEEecC
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY-SKDRIVGAHFF 129 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntSt---l~~~~la~~~~-~~~r~ig~hf~ 129 (403)
+.+.+.-+=++..+.+++++++. |+|- +.-+.|.+.++ .+-+-.++--|
T Consensus 208 t~~T~~li~~~~l~~mk~ga~lI-N~aRG~~Vde~AL~~aL~~g~i~gAaLDV~ 260 (314)
T PRK06932 208 TETTQNLINAETLALMKPTAFLI-NTGRGPLVDEQALLDALENGKIAGAALDVL 260 (314)
T ss_pred ChHHhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCccEEEEecC
Confidence 98876666567888899999997 5543 55557888775 23344556555
No 177
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=94.53 E-value=0.39 Score=46.92 Aligned_cols=116 Identities=15% Similarity=0.124 Sum_probs=75.2
Q ss_pred ChHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecC
Q 015610 1 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la-~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
+|+.+|..+. ..|.+|..||+....-... +.| ++.. ++ +.++.||+|+.++|
T Consensus 156 IG~~va~~l~~~fgm~V~~~~~~~~~~~~~------------~~~-------------~~~~-~l~ell~~sDvv~lh~p 209 (323)
T PRK15409 156 IGMALAQRAHFGFNMPILYNARRHHKEAEE------------RFN-------------ARYC-DLDTLLQESDFVCIILP 209 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchhhHH------------hcC-------------cEec-CHHHHHHhCCEEEEeCC
Confidence 4788898876 6789999999864321100 112 1122 44 55799999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEecCCC---CCHHHHHhhcCC-CCcEEEEecC--CCCC------CCCeEEEecC
Q 015610 79 ENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF--SPAH------VMPLLEIVRT 143 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~~~~~ilasntSt---l~~~~la~~~~~-~~r~ig~hf~--~P~~------~~~lvevv~~ 143 (403)
-+.+.+.-+=++..+.+++++++. ||+- +.-+.|.+.+.. +-.-.++--| .|.. ..+-+.+.|+
T Consensus 210 lt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPH 285 (323)
T PRK15409 210 LTDETHHLFGAEQFAKMKSSAIFI-NAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPH 285 (323)
T ss_pred CChHHhhccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCc
Confidence 999877766567888899999997 5543 555578887753 2233445544 2432 2355666666
No 178
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.49 E-value=0.16 Score=51.14 Aligned_cols=77 Identities=17% Similarity=0.116 Sum_probs=53.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
+|..+|..+...|.+|+++|+++.+++.+. +.|.- .....+.++++|+||+|....
T Consensus 213 IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~-----------~~G~~-------------~~~~~e~v~~aDVVI~atG~~ 268 (413)
T cd00401 213 VGKGCAQSLRGQGARVIVTEVDPICALQAA-----------MEGYE-------------VMTMEEAVKEGDIFVTTTGNK 268 (413)
T ss_pred HHHHHHHHHHHCCCEEEEEECChhhHHHHH-----------hcCCE-------------EccHHHHHcCCCEEEECCCCH
Confidence 588899998889999999999999887774 34431 011114567899999997643
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecC
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNT 105 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasnt 105 (403)
..+. ....+.++++++++..+
T Consensus 269 ~~i~----~~~l~~mk~GgilvnvG 289 (413)
T cd00401 269 DIIT----GEHFEQMKDGAIVCNIG 289 (413)
T ss_pred HHHH----HHHHhcCCCCcEEEEeC
Confidence 2222 23455789999987443
No 179
>PLN02602 lactate dehydrogenase
Probab=94.32 E-value=0.14 Score=50.50 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=41.6
Q ss_pred hHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhh--cCccccccccccCCCCeEEEec
Q 015610 2 GSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTI--SLLTGVLDYESFKDVDMVIEAI 77 (403)
Q Consensus 2 G~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~--~~i~~~~~~~~~~~aDlVieav 77 (403)
|..+|..++..|. ++.|+|++++.++...-.+... ...+ .+++...+++++++||+||-+.
T Consensus 49 G~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~---------------~~~~~~~~i~~~~dy~~~~daDiVVitA 113 (350)
T PLN02602 49 GMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHA---------------AAFLPRTKILASTDYAVTAGSDLCIVTA 113 (350)
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhh---------------hhcCCCCEEEeCCCHHHhCCCCEEEECC
Confidence 7889999988887 7999999987654332222211 1111 1343345788899999999985
Q ss_pred C
Q 015610 78 I 78 (403)
Q Consensus 78 ~ 78 (403)
-
T Consensus 114 G 114 (350)
T PLN02602 114 G 114 (350)
T ss_pred C
Confidence 4
No 180
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=94.22 E-value=0.22 Score=50.59 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=38.2
Q ss_pred CCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 12 SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 12 ~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
.+-+|+++|+++++++.. .+..+++.++...+ -++..++|. +++.|||+||.++-.
T Consensus 28 ~~~ei~L~Did~~Rl~~v----~~l~~~~~~~~g~~--------~~v~~ttD~~~Al~gADfVi~~irv 84 (425)
T cd05197 28 PISEVTLYDIDEERLDII----LTIAKRYVEEVGAD--------IKFEKTMDLEDAIIDADFVINQFRV 84 (425)
T ss_pred CCCEEEEEcCCHHHHHHH----HHHHHHHHHhhCCC--------eEEEEeCCHHHHhCCCCEEEEeeec
Confidence 456999999999998773 33333333332111 135667777 889999999998764
No 181
>PRK06487 glycerate dehydrogenase; Provisional
Probab=94.14 E-value=0.26 Score=48.10 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=68.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
+|+.+|..+...|.+|+.||+..... . . . ..++ +.++.||+|+.++|-
T Consensus 159 IG~~vA~~l~~fgm~V~~~~~~~~~~-----------------~-~------------~-~~~l~ell~~sDiv~l~lPl 207 (317)
T PRK06487 159 LGGAVARLAEAFGMRVLIGQLPGRPA-----------------R-P------------D-RLPLDELLPQVDALTLHCPL 207 (317)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCcc-----------------c-c------------c-ccCHHHHHHhCCEEEECCCC
Confidence 47889999888899999999863210 0 0 0 1134 557899999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCC---CCHHHHHhhcCC-CCcEEEEecC
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF 129 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntSt---l~~~~la~~~~~-~~r~ig~hf~ 129 (403)
+.+.+.-+=++..+.++++++|. |+|- +.-+.|.+.+.. +-+-.++--|
T Consensus 208 t~~T~~li~~~~~~~mk~ga~lI-N~aRG~vVde~AL~~AL~~g~i~gAaLDVf 260 (317)
T PRK06487 208 TEHTRHLIGARELALMKPGALLI-NTARGGLVDEQALADALRSGHLGGAATDVL 260 (317)
T ss_pred ChHHhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEeecC
Confidence 99877666677888899999997 5543 455578777752 2233455555
No 182
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=94.10 E-value=0.16 Score=51.42 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=35.8
Q ss_pred CCceEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 13 NYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 13 G~~V~l~d~~-~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
+-+|+++|++ +++++.....++ ++.+....+ -++..+++. +++.|||+||.++-.
T Consensus 29 ~~ei~L~Did~~~rl~~v~~~~~----~~~~~~~~~--------~~v~~t~d~~~al~gadfVi~~~~v 85 (419)
T cd05296 29 VTELVLVDIDEEEKLEIVGALAK----RMVKKAGLP--------IKVHLTTDRREALEGADFVFTQIRV 85 (419)
T ss_pred CCEEEEecCChHHHHHHHHHHHH----HHHHhhCCC--------eEEEEeCCHHHHhCCCCEEEEEEee
Confidence 4689999999 788766433333 333322111 135567777 889999999998643
No 183
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=94.08 E-value=0.11 Score=50.33 Aligned_cols=100 Identities=20% Similarity=0.207 Sum_probs=58.5
Q ss_pred ChHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~ 78 (403)
.|..+|..++..|. ++.|+|++++.++.-...+....... +. -..++ ..+++++++||+||-+.-
T Consensus 7 VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~---~~---------~~~i~-~~~~~~~~daDivVitag 73 (299)
T TIGR01771 7 VGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFL---PT---------PKKIR-SGDYSDCKDADLVVITAG 73 (299)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhccc---CC---------CeEEe-cCCHHHHCCCCEEEECCC
Confidence 38889999998887 79999998876543322221111000 00 01232 456799999999999765
Q ss_pred C--------------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhh
Q 015610 79 E--------------NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER 116 (403)
Q Consensus 79 e--------------~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~ 116 (403)
. +..+-+++..++.+. .|++++..-| -|.+-++..
T Consensus 74 ~~rk~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvs--NP~d~~t~~ 122 (299)
T TIGR01771 74 APQKPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVAT--NPVDILTYV 122 (299)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeC--CHHHHHHHH
Confidence 4 222334444556665 5677766433 366544433
No 184
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=94.07 E-value=0.25 Score=50.32 Aligned_cols=57 Identities=18% Similarity=0.157 Sum_probs=38.8
Q ss_pred CCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCCC
Q 015610 12 SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIEN 80 (403)
Q Consensus 12 ~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e~ 80 (403)
.+-+|+|+|+++++++.. .+..+++.++...+ -+++.++|. +++++||+||.++-..
T Consensus 28 ~~~ei~L~DId~~rl~~v----~~l~~~~~~~~g~~--------~~v~~Ttdr~eAl~gADfVi~~irvG 85 (437)
T cd05298 28 PLRELVLYDIDAERQEKV----AEAVKILFKENYPE--------IKFVYTTDPEEAFTDADFVFAQIRVG 85 (437)
T ss_pred CCCEEEEECCCHHHHHHH----HHHHHHHHHhhCCC--------eEEEEECCHHHHhCCCCEEEEEeeeC
Confidence 356999999999998773 33333444332111 146677777 8999999999987653
No 185
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=94.02 E-value=0.22 Score=49.72 Aligned_cols=99 Identities=12% Similarity=0.143 Sum_probs=65.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||+.+|..+...|++|++||+..... .+.. ...++ +.+++||+|+.++|-
T Consensus 127 IG~~va~~l~a~G~~V~~~Dp~~~~~----------------~~~~-------------~~~~l~ell~~aDiV~lh~Pl 177 (381)
T PRK00257 127 VGGRLVRVLRGLGWKVLVCDPPRQEA----------------EGDG-------------DFVSLERILEECDVISLHTPL 177 (381)
T ss_pred HHHHHHHHHHHCCCEEEEECCccccc----------------ccCc-------------cccCHHHHHhhCCEEEEeCcC
Confidence 68999999999999999999754321 1110 12244 456899999999998
Q ss_pred ChH---HHHHHH-HHHHhhCCCCcEEEecCCC---CCHHHHHhhcC-CCCcEEEEecC
Q 015610 80 NVS---LKQQIF-ADLEKYCPPHCILASNTST---IDLNLIGERTY-SKDRIVGAHFF 129 (403)
Q Consensus 80 ~~~---~K~~~~-~~l~~~~~~~~ilasntSt---l~~~~la~~~~-~~~r~ig~hf~ 129 (403)
..+ --+.++ ++..+.+++++++. |+|. +.-..|.+.+. .+....++--|
T Consensus 178 t~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVde~AL~~aL~~g~i~~a~LDV~ 234 (381)
T PRK00257 178 TKEGEHPTRHLLDEAFLASLRPGAWLI-NASRGAVVDNQALREALLSGEDLDAVLDVW 234 (381)
T ss_pred CCCccccccccCCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHHhCCCcEEEEeCC
Confidence 763 223444 45677799999997 4544 44446766663 33344556555
No 186
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.64 E-value=0.11 Score=47.68 Aligned_cols=95 Identities=25% Similarity=0.304 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHCCC-ceEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccc------------cc
Q 015610 1 MGSGIATALILSNY-PVILKEVN---EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL------------DY 64 (403)
Q Consensus 1 MG~~iA~~la~~G~-~V~l~d~~---~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~------------~~ 64 (403)
||+.+|..|++.|. +++++|.+ .+.+.+-. . ... +-|.-..+.+...+.++.... +.
T Consensus 39 lGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~--~---~~~--dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~ 111 (212)
T PRK08644 39 LGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQ--Y---FIS--QIGMPKVEALKENLLEINPFVEIEAHNEKIDEDNI 111 (212)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCEeccccccccE--e---ehh--hCCChHHHHHHHHHHHHCCCCEEEEEeeecCHHHH
Confidence 68999999999998 59999998 33332110 0 000 112111112222222111110 11
Q ss_pred -cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEe
Q 015610 65 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 103 (403)
Q Consensus 65 -~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilas 103 (403)
+.++++|+||+| .++.+.|..+.....+..+...|.++
T Consensus 112 ~~~~~~~DvVI~a-~D~~~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 112 EELFKDCDIVVEA-FDNAETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred HHHHcCCCEEEEC-CCCHHHHHHHHHHHHHhCCCCEEEee
Confidence 346789999999 57888888787766655444455543
No 187
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.45 E-value=0.21 Score=50.56 Aligned_cols=76 Identities=21% Similarity=0.124 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
+|.++|..+...|.+|+++|+++.+...+. ..|. ...+-.++++++|+||+|...
T Consensus 223 IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~-----------~~G~-------------~v~~l~eal~~aDVVI~aTG~- 277 (425)
T PRK05476 223 VGKGCAQRLRGLGARVIVTEVDPICALQAA-----------MDGF-------------RVMTMEEAAELGDIFVTATGN- 277 (425)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchhhHHHH-----------hcCC-------------EecCHHHHHhCCCEEEECCCC-
Confidence 588999999999999999999998765442 2231 011111456789999998743
Q ss_pred hHHHHHHHH-HHHhhCCCCcEEEecC
Q 015610 81 VSLKQQIFA-DLEKYCPPHCILASNT 105 (403)
Q Consensus 81 ~~~K~~~~~-~l~~~~~~~~ilasnt 105 (403)
+ .++. +..+.++++++++..+
T Consensus 278 ---~-~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 278 ---K-DVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred ---H-HHHHHHHHhcCCCCCEEEEcC
Confidence 2 2443 4666789999997544
No 188
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.40 E-value=0.23 Score=49.92 Aligned_cols=87 Identities=22% Similarity=0.119 Sum_probs=56.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
+|.++|..+...|.+|+++|+++.....+. ..|. ...+..++++++|+||++....
T Consensus 206 IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G~-------------~v~~leeal~~aDVVItaTG~~ 261 (406)
T TIGR00936 206 CGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDGF-------------RVMTMEEAAKIGDIFITATGNK 261 (406)
T ss_pred HHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcCC-------------EeCCHHHHHhcCCEEEECCCCH
Confidence 488999999989999999999997654442 2332 0111124567899999987632
Q ss_pred hHHHHHHHH-HHHhhCCCCcEEEecCCC---CCHHHHHhh
Q 015610 81 VSLKQQIFA-DLEKYCPPHCILASNTST---IDLNLIGER 116 (403)
Q Consensus 81 ~~~K~~~~~-~l~~~~~~~~ilasntSt---l~~~~la~~ 116 (403)
.++. +..+.++++++++..+.. ++...|.+.
T Consensus 262 -----~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~ 296 (406)
T TIGR00936 262 -----DVIRGEHFENMKDGAIVANIGHFDVEIDVKALEEL 296 (406)
T ss_pred -----HHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHH
Confidence 2332 355678999999843332 334455443
No 189
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=93.32 E-value=0.57 Score=47.65 Aligned_cols=97 Identities=12% Similarity=0.072 Sum_probs=60.4
Q ss_pred hHHHHHHHHHC-------CC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcc-ccccccccCCCC
Q 015610 2 GSGIATALILS-------NY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT-GVLDYESFKDVD 71 (403)
Q Consensus 2 G~~iA~~la~~-------G~--~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~~~~aD 71 (403)
|..+|..++.. |+ +++++|++++.++.-.-.++...-- .+.+++ .+.++++++|||
T Consensus 113 G~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~--------------~~~~v~i~~~~ye~~kdaD 178 (444)
T PLN00112 113 SNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYP--------------LLREVSIGIDPYEVFQDAE 178 (444)
T ss_pred HHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhh--------------hcCceEEecCCHHHhCcCC
Confidence 78889988888 76 8999999998875443222222111 112233 345679999999
Q ss_pred eEEEecCCC--------------hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHH
Q 015610 72 MVIEAIIEN--------------VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 114 (403)
Q Consensus 72 lVieav~e~--------------~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la 114 (403)
+||-+.--. ..+-+++...|.++.++++++...| -|++-++
T Consensus 179 iVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t 233 (444)
T PLN00112 179 WALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNA 233 (444)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHH
Confidence 999875431 1223333345666567888887544 4665443
No 190
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.07 E-value=0.11 Score=46.56 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIG 31 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~ 31 (403)
+|..++..|+..|++|++++++.++++...+
T Consensus 40 iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~ 70 (194)
T cd01078 40 VGQRAAVLLAREGARVVLVGRDLERAQKAAD 70 (194)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 4678889999999999999999887765543
No 191
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.92 E-value=0.33 Score=43.99 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcccccccccc-CCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~aDlVieav~e 79 (403)
||..+|..|...|++|+++|+++++++...+ .-|. +..++.+.+ .+||+++-|..+
T Consensus 39 vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~----------~~g~-------------~~v~~~~l~~~~~Dv~vp~A~~ 95 (200)
T cd01075 39 VGYKLAEHLLEEGAKLIVADINEEAVARAAE----------LFGA-------------TVVAPEEIYSVDADVFAPCALG 95 (200)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH----------HcCC-------------EEEcchhhccccCCEEEecccc
Confidence 6999999999999999999999987766532 1021 112222222 379999988777
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEE
Q 015610 80 NVSLKQQIFADLEKYCPPHCILA 102 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ila 102 (403)
+. +-... .+.++.+.|+.
T Consensus 96 ~~-I~~~~----~~~l~~~~v~~ 113 (200)
T cd01075 96 GV-INDDT----IPQLKAKAIAG 113 (200)
T ss_pred cc-cCHHH----HHHcCCCEEEE
Confidence 63 22222 23345566655
No 192
>PLN02306 hydroxypyruvate reductase
Probab=92.82 E-value=0.62 Score=46.68 Aligned_cols=117 Identities=18% Similarity=0.136 Sum_probs=70.0
Q ss_pred ChHHHHHHHH-HCCCceEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEec
Q 015610 1 MGSGIATALI-LSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAI 77 (403)
Q Consensus 1 MG~~iA~~la-~~G~~V~l~d~~~~~-l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav 77 (403)
+|+.+|..++ ..|.+|+.||+.+.. .+.... ..-..+...+... ..++...++ +.++.||+|+.++
T Consensus 176 IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~---~~~~~l~~~~~~~--------~~~~~~~~L~ell~~sDiV~lh~ 244 (386)
T PLN02306 176 IGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVT---AYGQFLKANGEQP--------VTWKRASSMEEVLREADVISLHP 244 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchhhhhhhh---hhccccccccccc--------ccccccCCHHHHHhhCCEEEEeC
Confidence 4778888875 569999999997642 111000 0000000011000 011123455 5579999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCCcEEEecCCC---CCHHHHHhhcCC-CCcEEEEecC
Q 015610 78 IENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF 129 (403)
Q Consensus 78 ~e~~~~K~~~~~~l~~~~~~~~ilasntSt---l~~~~la~~~~~-~~r~ig~hf~ 129 (403)
|-+.+.+.-+=++..+.++++++|. |++- +.-..|.+.+.. +-...++--|
T Consensus 245 Plt~~T~~lin~~~l~~MK~ga~lI-N~aRG~lVDe~AL~~AL~sg~i~gAaLDVf 299 (386)
T PLN02306 245 VLDKTTYHLINKERLALMKKEAVLV-NASRGPVIDEVALVEHLKANPMFRVGLDVF 299 (386)
T ss_pred CCChhhhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHhCCeeEEEEeCC
Confidence 9998777666677888899999997 5543 445577777743 2233455545
No 193
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.78 E-value=0.41 Score=46.44 Aligned_cols=97 Identities=15% Similarity=0.217 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhh----cCccccccccccCCCCeEE
Q 015610 1 MGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTI----SLLTGVLDYESFKDVDMVI 74 (403)
Q Consensus 1 MG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~----~~i~~~~~~~~~~~aDlVi 74 (403)
.|..+|..++..|. +++|+|++++.++.-.-.+... .... .+++ +.+++++++||+||
T Consensus 10 VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~---------------~~~~~~~~~~i~-~~~y~~~~~aDivv 73 (307)
T cd05290 10 VGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHA---------------TALTYSTNTKIR-AGDYDDCADADIIV 73 (307)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhh---------------hccCCCCCEEEE-ECCHHHhCCCCEEE
Confidence 38899999998887 7999999877643322111111 1111 1233 45789999999999
Q ss_pred EecCC------C----------hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhh
Q 015610 75 EAIIE------N----------VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER 116 (403)
Q Consensus 75 eav~e------~----------~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~ 116 (403)
-+.-. + ..+-+++..++.+.+ |++++... |-|++-++..
T Consensus 74 itaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivv--sNPvDv~t~~ 128 (307)
T cd05290 74 ITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILI--TNPLDIAVYI 128 (307)
T ss_pred ECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEe--cCcHHHHHHH
Confidence 87653 1 112223333455565 66776642 2466544433
No 194
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=92.76 E-value=0.28 Score=50.12 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=55.2
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
+|+++|..+...|.+|+++|+++.....+. ..|. . ..++ +.++.+|+||.|..
T Consensus 265 IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-----------~~G~-------------~-~~~leell~~ADIVI~atG- 318 (476)
T PTZ00075 265 VGKGCAQALRGFGARVVVTEIDPICALQAA-----------MEGY-------------Q-VVTLEDVVETADIFVTATG- 318 (476)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhHHHHH-----------hcCc-------------e-eccHHHHHhcCCEEEECCC-
Confidence 589999999999999999999987654432 2232 1 1123 45789999999863
Q ss_pred ChHHHHHHH-HHHHhhCCCCcEEEecCCCCCHH
Q 015610 80 NVSLKQQIF-ADLEKYCPPHCILASNTSTIDLN 111 (403)
Q Consensus 80 ~~~~K~~~~-~~l~~~~~~~~ilasntStl~~~ 111 (403)
. +.++ .+..+.++++++|+ |++....+
T Consensus 319 t----~~iI~~e~~~~MKpGAiLI-NvGr~d~E 346 (476)
T PTZ00075 319 N----KDIITLEHMRRMKNNAIVG-NIGHFDNE 346 (476)
T ss_pred c----ccccCHHHHhccCCCcEEE-EcCCCchH
Confidence 2 2344 35566789999997 56565543
No 195
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=92.59 E-value=0.86 Score=45.60 Aligned_cols=99 Identities=15% Similarity=0.090 Sum_probs=57.9
Q ss_pred hHHHHHHHHHCCC-c------eEEE--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcc-ccccccccCCCC
Q 015610 2 GSGIATALILSNY-P------VILK--EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT-GVLDYESFKDVD 71 (403)
Q Consensus 2 G~~iA~~la~~G~-~------V~l~--d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~~~~aD 71 (403)
|..+|..++..|. . ++|+ |++++.++.-.-.+....- ..+.+++ .+.++++++|||
T Consensus 57 G~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~--------------~~~~~v~i~~~~y~~~kdaD 122 (387)
T TIGR01757 57 SNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLY--------------PLLREVSIGIDPYEVFEDAD 122 (387)
T ss_pred HHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhh--------------hhcCceEEecCCHHHhCCCC
Confidence 7889999988876 2 4455 7777775443222222110 1112233 245679999999
Q ss_pred eEEEecCCC--------------hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhh
Q 015610 72 MVIEAIIEN--------------VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER 116 (403)
Q Consensus 72 lVieav~e~--------------~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~ 116 (403)
+||-+.--. ..+-+.+...|.++.+|++++...| -|++-++-.
T Consensus 123 IVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs--NPvDv~t~v 179 (387)
T TIGR01757 123 WALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG--NPCNTNALI 179 (387)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC--CcHHHHHHH
Confidence 999865331 2233344445777788999887543 466544433
No 196
>PRK06141 ornithine cyclodeaminase; Validated
Probab=92.56 E-value=0.23 Score=48.38 Aligned_cols=82 Identities=18% Similarity=0.107 Sum_probs=51.1
Q ss_pred ChHHHHHHHHH--CCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEec
Q 015610 1 MGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAI 77 (403)
Q Consensus 1 MG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav 77 (403)
||..++..++. ...+|++|++++++.++..+.+++ .|. .+....+. +++.+||+||.|.
T Consensus 136 ~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~av~~aDIVi~aT 197 (314)
T PRK06141 136 LASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAAVRQADIISCAT 197 (314)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHHHhcCCEEEEee
Confidence 57777764443 457899999999987766543321 121 12234454 5678999999998
Q ss_pred CCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 015610 78 IENVSLKQQIFADLEKYCPPHCILASNTS 106 (403)
Q Consensus 78 ~e~~~~K~~~~~~l~~~~~~~~ilasntS 106 (403)
+... .++. .+.++|++.|...+|
T Consensus 198 ~s~~----pvl~--~~~l~~g~~i~~ig~ 220 (314)
T PRK06141 198 LSTE----PLVR--GEWLKPGTHLDLVGN 220 (314)
T ss_pred CCCC----CEec--HHHcCCCCEEEeeCC
Confidence 8662 2222 145678887654444
No 197
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=92.49 E-value=0.12 Score=46.06 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=35.0
Q ss_pred CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCCC
Q 015610 13 NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIEN 80 (403)
Q Consensus 13 G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e~ 80 (403)
+-+++|+|+|+++++....-.++..+.. | .+ -+++.++|. +++++||+||.++--.
T Consensus 28 ~~ei~L~Did~~RL~~~~~~~~~~~~~~---~-~~--------~~v~~ttd~~eAl~gADfVi~~irvG 84 (183)
T PF02056_consen 28 GSEIVLMDIDEERLEIVERLARRMVEEA---G-AD--------LKVEATTDRREALEGADFVINQIRVG 84 (183)
T ss_dssp EEEEEEE-SCHHHHHHHHHHHHHHHHHC---T-TS--------SEEEEESSHHHHHTTESEEEE---TT
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHHHhc---C-CC--------eEEEEeCCHHHHhCCCCEEEEEeeec
Confidence 3489999999999887654444443321 2 11 135567777 8899999999987643
No 198
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=92.22 E-value=0.55 Score=45.91 Aligned_cols=96 Identities=15% Similarity=0.045 Sum_probs=56.3
Q ss_pred hHHHHHHHHHCCC-------ceEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhc--CccccccccccCCC
Q 015610 2 GSGIATALILSNY-------PVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--LLTGVLDYESFKDV 70 (403)
Q Consensus 2 G~~iA~~la~~G~-------~V~l~d~~~~--~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i~~~~~~~~~~~a 70 (403)
|..+|..++..|+ +++|+|++++ .++.-.-.+. .... .... .++ ..+++++++|
T Consensus 16 G~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~--------~~~~------~~~~~~~i~-~~~~~~~~da 80 (323)
T TIGR01759 16 GYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELE--------DCAF------PLLAGVVAT-TDPEEAFKDV 80 (323)
T ss_pred HHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHh--------hccc------cccCCcEEe-cChHHHhCCC
Confidence 7888998988886 7999999752 2211110011 0000 0011 232 4567999999
Q ss_pred CeEEEecCCC--------------hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHH
Q 015610 71 DMVIEAIIEN--------------VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 114 (403)
Q Consensus 71 DlVieav~e~--------------~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la 114 (403)
|+||-+.--. ..+-+.+..++.+++++++++...| -|++-++
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 136 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA 136 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 9999765431 2233444456778887788887654 4665443
No 199
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=92.04 E-value=2.7 Score=40.86 Aligned_cols=141 Identities=14% Similarity=0.048 Sum_probs=87.5
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcccccccc--ccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE--SFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~~~~aDlVieav~ 78 (403)
||.=.|..+.++||.|...||++-. .+.++ ...+. .+.+. .-+..|+|+.|+.
T Consensus 63 mGqflAetli~aGh~li~hsRsdys--saa~~--------yg~~~---------------ft~lhdlcerhpDvvLlcts 117 (480)
T KOG2380|consen 63 MGQFLAETLIDAGHGLICHSRSDYS--SAAEK--------YGSAK---------------FTLLHDLCERHPDVVLLCTS 117 (480)
T ss_pred HHHHHHHHHHhcCceeEecCcchhH--HHHHH--------hcccc---------------cccHHHHHhcCCCEEEEEeh
Confidence 7888999999999999999998822 22111 11121 12221 1267899999984
Q ss_pred CChHHHHHHHHHHHhh-CCCCcEEEecCCCCCHH-HHH-hhcCCCCcEEEEecCC-CCC------CCCeEEEec--C-CC
Q 015610 79 ENVSLKQQIFADLEKY-CPPHCILASNTSTIDLN-LIG-ERTYSKDRIVGAHFFS-PAH------VMPLLEIVR--T-NQ 145 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~-~~~~~ilasntStl~~~-~la-~~~~~~~r~ig~hf~~-P~~------~~~lvevv~--~-~~ 145 (403)
-. . ...+++..-.. .+.+||+.+.+|.--.. ++. +-++..-..+..|+|. |-+ +.|+|-+-. | ..
T Consensus 118 il-s-iekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~ 195 (480)
T KOG2380|consen 118 IL-S-IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAA 195 (480)
T ss_pred hh-h-HHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccc
Confidence 32 2 23344433222 67789999988873332 222 2233333689999997 442 236654321 1 22
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEe
Q 015610 146 TSPQVIVDLLDIGKKIKKTPIVV 168 (403)
Q Consensus 146 t~~e~~~~~~~l~~~lGk~~v~~ 168 (403)
..++-.+.+.+++...|-..|.+
T Consensus 196 ~r~ercE~fleIf~cegckmVem 218 (480)
T KOG2380|consen 196 SRPERCEFFLEIFACEGCKMVEM 218 (480)
T ss_pred cchHHHHHHHHHHHhcCCeEEEE
Confidence 34899999999999999888887
No 200
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=92.00 E-value=0.44 Score=45.36 Aligned_cols=60 Identities=20% Similarity=0.130 Sum_probs=39.3
Q ss_pred ChHHHHHHHHH--CCCceE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEe
Q 015610 1 MGSGIATALIL--SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEA 76 (403)
Q Consensus 1 MG~~iA~~la~--~G~~V~-l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViea 76 (403)
||..++..+.+ .|++|+ ++|+++++.+...+ +.|.. ...+++ +.+.++|+|++|
T Consensus 17 IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~----------~~g~~------------~~~~~~eell~~~D~Vvi~ 74 (271)
T PRK13302 17 IGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIW----------GLRRP------------PPVVPLDQLATHADIVVEA 74 (271)
T ss_pred HHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHH----------hcCCC------------cccCCHHHHhcCCCEEEEC
Confidence 57888888876 378876 78999987654421 11210 123344 335789999999
Q ss_pred cCCChH
Q 015610 77 IIENVS 82 (403)
Q Consensus 77 v~e~~~ 82 (403)
.|.+..
T Consensus 75 tp~~~h 80 (271)
T PRK13302 75 APASVL 80 (271)
T ss_pred CCcHHH
Confidence 998753
No 201
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=91.66 E-value=0.13 Score=51.16 Aligned_cols=99 Identities=13% Similarity=0.056 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
||+.+|..+...|++|.+||+.... .+.. . ...++ +.++.||+|+..+|-
T Consensus 127 IG~~vA~~l~a~G~~V~~~dp~~~~-----------------~~~~-----------~-~~~~L~ell~~sDiI~lh~PL 177 (378)
T PRK15438 127 VGRRLQARLEALGIKTLLCDPPRAD-----------------RGDE-----------G-DFRSLDELVQEADILTFHTPL 177 (378)
T ss_pred HHHHHHHHHHHCCCEEEEECCcccc-----------------cccc-----------c-ccCCHHHHHhhCCEEEEeCCC
Confidence 5889999999999999999964321 0100 0 12345 456899999999997
Q ss_pred ChH----HHHHHHHHHHhhCCCCcEEEecCCC---CCHHHHHhhcC-CCCcEEEEecC
Q 015610 80 NVS----LKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY-SKDRIVGAHFF 129 (403)
Q Consensus 80 ~~~----~K~~~~~~l~~~~~~~~ilasntSt---l~~~~la~~~~-~~~r~ig~hf~ 129 (403)
..+ .+.-+=++..+.++++++++ |+|- +.-+.|.+.++ .+..-.++--|
T Consensus 178 t~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVDe~AL~~aL~~g~~~ga~LDV~ 234 (378)
T PRK15438 178 FKDGPYKTLHLADEKLIRSLKPGAILI-NACRGAVVDNTALLTCLNEGQKLSVVLDVW 234 (378)
T ss_pred CCCcccccccccCHHHHhcCCCCcEEE-ECCCchhcCHHHHHHHHHhCCCcEEEEecC
Confidence 654 22222245667899999998 4543 44556777764 33345566655
No 202
>PRK05442 malate dehydrogenase; Provisional
Probab=91.33 E-value=0.56 Score=45.90 Aligned_cols=96 Identities=14% Similarity=0.099 Sum_probs=55.5
Q ss_pred ChHHHHHHHHHCCC-------ceEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHH-Hhhc--CccccccccccC
Q 015610 1 MGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFE-KTIS--LLTGVLDYESFK 68 (403)
Q Consensus 1 MG~~iA~~la~~G~-------~V~l~d~~~~~--l~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~--~i~~~~~~~~~~ 68 (403)
.|..+|..++..|. +++|+|++++. ++.-.-.+ .+.. ..+. +++ ..++++++
T Consensus 16 VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl---------------~~~~~~~~~~~~i~-~~~y~~~~ 79 (326)
T PRK05442 16 IGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMEL---------------DDCAFPLLAGVVIT-DDPNVAFK 79 (326)
T ss_pred HHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhh---------------hhhhhhhcCCcEEe-cChHHHhC
Confidence 37888988888776 79999996532 21111001 1111 1111 232 45669999
Q ss_pred CCCeEEEecCC--------------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHH
Q 015610 69 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 114 (403)
Q Consensus 69 ~aDlVieav~e--------------~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la 114 (403)
|||+||-+.-- +..+-+++..+|.+++++++++...| -|++-++
T Consensus 80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 137 (326)
T PRK05442 80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNA 137 (326)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHH
Confidence 99999976542 11233444456777787888887544 4665333
No 203
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=91.14 E-value=0.73 Score=42.35 Aligned_cols=86 Identities=21% Similarity=0.228 Sum_probs=51.0
Q ss_pred HHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH----HHHH-hhcCccc-cccc-----cccCCCCeE
Q 015610 5 IATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE----KFEK-TISLLTG-VLDY-----ESFKDVDMV 73 (403)
Q Consensus 5 iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~----~~~~-~~~~i~~-~~~~-----~~~~~aDlV 73 (403)
-|..||..|++|+.+|.++++++++.. +.+..... +... .-.+++. ..|. +.....|+|
T Consensus 51 da~~LA~~G~~V~avD~s~~Ai~~~~~----------~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v 120 (218)
T PRK13255 51 DMLWLAEQGHEVLGVELSELAVEQFFA----------ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAV 120 (218)
T ss_pred hHHHHHhCCCeEEEEccCHHHHHHHHH----------HcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEE
Confidence 366789999999999999999998632 22211000 0000 0012221 1222 122345888
Q ss_pred EEec---CCChHHHHHHHHHHHhhCCCCcE
Q 015610 74 IEAI---IENVSLKQQIFADLEKYCPPHCI 100 (403)
Q Consensus 74 ieav---~e~~~~K~~~~~~l~~~~~~~~i 100 (403)
++.. .=+.+.+...++.|.+.++|+..
T Consensus 121 ~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 121 YDRAALIALPEEMRERYVQQLAALLPAGCR 150 (218)
T ss_pred EehHhHhhCCHHHHHHHHHHHHHHcCCCCe
Confidence 8643 23456688899999999999954
No 204
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=91.10 E-value=7.8 Score=37.28 Aligned_cols=168 Identities=18% Similarity=0.142 Sum_probs=98.1
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 2 GSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~-l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
|..=|++|..+|.+|++=-+.... .++| .+.|- .+-+-.++++.+|+|+.-+|+.
T Consensus 30 G~ahalNLRDSGlnViiGlr~g~~s~~kA-----------~~dGf-------------~V~~v~ea~k~ADvim~L~PDe 85 (338)
T COG0059 30 GHAQALNLRDSGLNVIIGLRKGSSSWKKA-----------KEDGF-------------KVYTVEEAAKRADVVMILLPDE 85 (338)
T ss_pred HHHHHhhhhhcCCcEEEEecCCchhHHHH-----------HhcCC-------------EeecHHHHhhcCCEEEEeCchh
Confidence 566788999999999876665544 4444 34552 2233337889999999999987
Q ss_pred hHHHHHHHH-HHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCC-------------CCCeEEEecCCCC
Q 015610 81 VSLKQQIFA-DLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH-------------VMPLLEIVRTNQT 146 (403)
Q Consensus 81 ~~~K~~~~~-~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~-------------~~~lvevv~~~~t 146 (403)
. -.+++. +|.+.++.+..+.- +.++.+- -..-.|..-+.+-..+|-- +.|.+.-|- ...
T Consensus 86 ~--q~~vy~~~I~p~Lk~G~aL~F-aHGfNih---f~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~-qD~ 158 (338)
T COG0059 86 Q--QKEVYEKEIAPNLKEGAALGF-AHGFNIH---FGLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVH-QDA 158 (338)
T ss_pred h--HHHHHHHHhhhhhcCCceEEe-cccccee---cceecCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEE-eCC
Confidence 4 667777 79999999998875 3455552 1111222333333334431 234443333 334
Q ss_pred CHHHHHHHHHHHHHcCCCcE---Ee--cc-c----ch--hhhhhhHHHHHHHHH-HHHHcCCCHHHH
Q 015610 147 SPQVIVDLLDIGKKIKKTPI---VV--GN-C----TG--FAVNRMFFPYTQAAF-LLVERGTDLYLI 200 (403)
Q Consensus 147 ~~e~~~~~~~l~~~lGk~~v---~~--~d-~----~G--~i~nRi~~~~~~Ea~-~l~~~G~~~~~i 200 (403)
+-...+.+..+.+.+|.+.. .. ++ + -| -++--.+..++..++ .|++.|.+|+-.
T Consensus 159 sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE~A 225 (338)
T COG0059 159 SGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPELA 225 (338)
T ss_pred CchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 55678888888888885432 21 11 1 11 122223344444444 456778777654
No 205
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=91.00 E-value=0.85 Score=44.29 Aligned_cols=82 Identities=16% Similarity=0.067 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecC
Q 015610 1 MGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G-~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
||..++..+...| .+|+++|+++++.+...+ +.|.. .....++ +.+.++|+||+|++
T Consensus 189 iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~----------~~g~~-----------~~~~~~~~~~l~~aDvVi~at~ 247 (311)
T cd05213 189 MGELAAKHLAAKGVAEITIANRTYERAEELAK----------ELGGN-----------AVPLDELLELLNEADVVISATG 247 (311)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----------HcCCe-----------EEeHHHHHHHHhcCCEEEECCC
Confidence 6788888888755 789999999987654421 11210 0011122 45678999999999
Q ss_pred CChHHHHHHHHHHHhhC-CCCcEEEecC
Q 015610 79 ENVSLKQQIFADLEKYC-PPHCILASNT 105 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~-~~~~ilasnt 105 (403)
.+.. ..++..+.+.. ..+.++.+.+
T Consensus 248 ~~~~--~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 248 APHY--AKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCch--HHHHHHHHhhCCCCCeEEEEeC
Confidence 7764 34444432222 3567777655
No 206
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=91.00 E-value=0.37 Score=47.05 Aligned_cols=103 Identities=21% Similarity=0.120 Sum_probs=72.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
+|..+|..+...|.+|..||+++. -+.. +.+. .++.+-.+.++.||+|+..+|-.
T Consensus 157 IG~avA~r~~~Fgm~v~y~~~~~~-~~~~------------~~~~------------~~y~~l~ell~~sDii~l~~Plt 211 (324)
T COG1052 157 IGQAVARRLKGFGMKVLYYDRSPN-PEAE------------KELG------------ARYVDLDELLAESDIISLHCPLT 211 (324)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCC-hHHH------------hhcC------------ceeccHHHHHHhCCEEEEeCCCC
Confidence 488899998877999999999986 1111 1111 12344226689999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCC---CCHHHHHhhcCC-CCcEEEEecC
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF 129 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntSt---l~~~~la~~~~~-~~r~ig~hf~ 129 (403)
.+...-+=++..+.++++++|. ||+- +.-..+.+.++. .-.-.|+.-|
T Consensus 212 ~~T~hLin~~~l~~mk~ga~lV-NtaRG~~VDe~ALi~AL~~g~i~gaglDV~ 263 (324)
T COG1052 212 PETRHLINAEELAKMKPGAILV-NTARGGLVDEQALIDALKSGKIAGAGLDVF 263 (324)
T ss_pred hHHhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHhCCcceEEeeec
Confidence 9988777788888999999996 6654 555577777742 2233455444
No 207
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=90.84 E-value=0.56 Score=44.62 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=44.3
Q ss_pred CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccc-c---c-cccCCCCeEEEecCC--ChHHHH
Q 015610 13 NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-D---Y-ESFKDVDMVIEAIIE--NVSLKQ 85 (403)
Q Consensus 13 G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~---~-~~~~~aDlVieav~e--~~~~K~ 85 (403)
|..|+.+|+++++.+.+++-+...+. +.. ++++.+ + . .+++++|+|+-|.-- +.+-|.
T Consensus 146 ~~~v~~iD~d~~A~~~a~~lv~~~~~--L~~-------------~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~ 210 (276)
T PF03059_consen 146 GARVHNIDIDPEANELARRLVASDLG--LSK-------------RMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKE 210 (276)
T ss_dssp --EEEEEESSHHHHHHHHHHHH---H--H-S-------------SEEEEES-GGGG-GG----SEEEE-TT-S----SHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhccc--ccC-------------CeEEEecchhccccccccCCEEEEhhhcccccchHH
Confidence 56789999999999988654442221 111 122221 1 1 357889999987543 444699
Q ss_pred HHHHHHHhhCCCCcEEEec
Q 015610 86 QIFADLEKYCPPHCILASN 104 (403)
Q Consensus 86 ~~~~~l~~~~~~~~ilasn 104 (403)
+++..|.+.++++++|..=
T Consensus 211 ~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 211 EILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp HHHHHHHHHS-TTSEEEEE
T ss_pred HHHHHHHhhCCCCcEEEEe
Confidence 9999999999999999854
No 208
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=90.75 E-value=0.69 Score=45.22 Aligned_cols=100 Identities=13% Similarity=0.075 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHCCC-------ceEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHH-HhhcCcccc-ccccccCCC
Q 015610 1 MGSGIATALILSNY-------PVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLTGV-LDYESFKDV 70 (403)
Q Consensus 1 MG~~iA~~la~~G~-------~V~l~d~~~~~-l~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~~~-~~~~~~~~a 70 (403)
.|..+|..++..|+ +++|+|++++. ..++. .++-.+.. .....+..+ .+++++++|
T Consensus 11 VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~--------------~~Dl~d~~~~~~~~~~~~~~~~~~~~~a 76 (324)
T TIGR01758 11 IGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGV--------------VMELMDCAFPLLDGVVPTHDPAVAFTDV 76 (324)
T ss_pred HHHHHHHHHHhccccCCCCccEEEEEecCCccccccee--------------EeehhcccchhcCceeccCChHHHhCCC
Confidence 37888998888665 59999997653 11111 11111111 112233333 346999999
Q ss_pred CeEEEecCCCh--------------HHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhh
Q 015610 71 DMVIEAIIENV--------------SLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER 116 (403)
Q Consensus 71 DlVieav~e~~--------------~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~ 116 (403)
|+||-+.--.. .+-+.+..+|.++++|++++...| -|++-++..
T Consensus 77 DiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t~v 134 (324)
T TIGR01758 77 DVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNALV 134 (324)
T ss_pred CEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHHHH
Confidence 99998654321 122333345777777888887644 466544433
No 209
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.61 E-value=0.33 Score=40.97 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHCCCc-eEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~~-V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
||++++..|+..|.+ |++++|+.+++++..+.+ ....+ .+...+++ +.+.++|+||.|+|
T Consensus 23 ~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~----------~~~~~~~~~~~~~~~DivI~aT~ 84 (135)
T PF01488_consen 23 AARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI----------EAIPLEDLEEALQEADIVINATP 84 (135)
T ss_dssp HHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE----------EEEEGGGHCHHHHTESEEEE-SS
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc----------ceeeHHHHHHHHhhCCeEEEecC
Confidence 578999999999997 999999998876654222 00000 01112222 45678999999998
Q ss_pred CChH
Q 015610 79 ENVS 82 (403)
Q Consensus 79 e~~~ 82 (403)
-...
T Consensus 85 ~~~~ 88 (135)
T PF01488_consen 85 SGMP 88 (135)
T ss_dssp TTST
T ss_pred CCCc
Confidence 7753
No 210
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.50 E-value=0.65 Score=45.37 Aligned_cols=98 Identities=14% Similarity=0.052 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHCCC-------ceEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHH-Hhhc--CccccccccccC
Q 015610 1 MGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFE-KTIS--LLTGVLDYESFK 68 (403)
Q Consensus 1 MG~~iA~~la~~G~-------~V~l~d~~~~~--l~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~--~i~~~~~~~~~~ 68 (403)
.|.++|..++..|. +++|+|++++. +..-. ++=.+.. ..+. +++ ..++++++
T Consensus 14 VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a---------------~Dl~~~~~~~~~~~~i~-~~~~~~~~ 77 (322)
T cd01338 14 IGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVA---------------MELEDCAFPLLAEIVIT-DDPNVAFK 77 (322)
T ss_pred HHHHHHHHHHhccccCCCCceEEEEEecCCcccccceee---------------hhhhhccccccCceEEe-cCcHHHhC
Confidence 37889999998887 79999996532 21110 1101111 0111 232 45679999
Q ss_pred CCCeEEEecCCC--------------hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhh
Q 015610 69 DVDMVIEAIIEN--------------VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER 116 (403)
Q Consensus 69 ~aDlVieav~e~--------------~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~ 116 (403)
|||+||-+.--. ..+-+.+..+|.++++|++++...| -|++-++-.
T Consensus 78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~ 137 (322)
T cd01338 78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALI 137 (322)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHH
Confidence 999999875431 2233444456777777788877543 466644433
No 211
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=90.41 E-value=0.9 Score=44.18 Aligned_cols=84 Identities=15% Similarity=0.239 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccc-c-cc--ccccCCCCeEE
Q 015610 1 MGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-V-LD--YESFKDVDMVI 74 (403)
Q Consensus 1 MG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~~~~~~aDlVi 74 (403)
.|..+|..++..|+ ++.|+|+++ +...+++ ...+. ...++.. . .+ ++++++||+||
T Consensus 11 VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~D---------L~~~~--------~~~~i~~~~~~~~~~~~~~daDivv 72 (312)
T TIGR01772 11 IGQPLSLLLKLQPYVSELSLYDIAG-AAGVAAD---------LSHIP--------TAASVKGFSGEEGLENALKGADVVV 72 (312)
T ss_pred HHHHHHHHHHhCCCCcEEEEecCCC-CcEEEch---------hhcCC--------cCceEEEecCCCchHHHcCCCCEEE
Confidence 37889999988887 899999987 2222211 01111 0123433 2 23 68999999999
Q ss_pred EecCC--------------ChHHHHHHHHHHHhhCCCCcEEEe
Q 015610 75 EAIIE--------------NVSLKQQIFADLEKYCPPHCILAS 103 (403)
Q Consensus 75 eav~e--------------~~~~K~~~~~~l~~~~~~~~ilas 103 (403)
-+.-- +..+-+++...|.++ .|++++..
T Consensus 73 itaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiiv 114 (312)
T TIGR01772 73 IPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILV 114 (312)
T ss_pred EeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEE
Confidence 87653 222333344456666 57777764
No 212
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=90.22 E-value=0.96 Score=43.82 Aligned_cols=96 Identities=25% Similarity=0.399 Sum_probs=56.3
Q ss_pred ChHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhh---cCccccccccccCCCCeEEE
Q 015610 1 MGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTI---SLLTGVLDYESFKDVDMVIE 75 (403)
Q Consensus 1 MG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~---~~i~~~~~~~~~~~aDlVie 75 (403)
.|.+.|..|+..++ ++.++|+.++..+--. ++-.+....+ .++....++++++++|+|+-
T Consensus 11 VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a---------------~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvi 75 (313)
T COG0039 11 VGSSLAFLLLLQGLGSELVLIDINEEKAEGVA---------------LDLSHAAAPLGSDVKITGDGDYEDLKGADIVVI 75 (313)
T ss_pred HHHHHHHHHhcccccceEEEEEcccccccchh---------------cchhhcchhccCceEEecCCChhhhcCCCEEEE
Confidence 37888988877654 8999999955432211 1111111111 22322244899999999999
Q ss_pred ec--CC------------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHH
Q 015610 76 AI--IE------------NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 114 (403)
Q Consensus 76 av--~e------------~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la 114 (403)
+. |. |..+.+.+-+++.+.++ ++|+...| -|++-++
T Consensus 76 tAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvt--NPvD~~t 125 (313)
T COG0039 76 TAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVT--NPVDILT 125 (313)
T ss_pred eCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEec--CcHHHHH
Confidence 87 32 33455555566777776 55555333 4665443
No 213
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=90.18 E-value=1.2 Score=36.65 Aligned_cols=41 Identities=22% Similarity=0.139 Sum_probs=31.0
Q ss_pred CCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH
Q 015610 68 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 110 (403)
Q Consensus 68 ~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~ 110 (403)
.++|+||.|+|.+...+... .+...+.+++++++.+|++..
T Consensus 64 ~~~DvV~~~~~~~~~~~~~~--~~~~~~~~g~~viD~s~~~~~ 104 (122)
T smart00859 64 LAVDIVFLALPHGVSKEIAP--LLPKAAEAGVKVIDLSSAFRM 104 (122)
T ss_pred cCCCEEEEcCCcHHHHHHHH--HHHhhhcCCCEEEECCccccC
Confidence 48999999999997555332 334556899999998888664
No 214
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=90.11 E-value=0.27 Score=46.89 Aligned_cols=97 Identities=14% Similarity=0.007 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecC
Q 015610 1 MGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G-~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
+|++++..|+..| .+|++++|+++++++..+.+.. .+. +....+. +.+.++|+||-|+|
T Consensus 134 ~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~~------------~~~~~~~~~~~~~~DivInaTp 194 (278)
T PRK00258 134 AARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LGK------------AELDLELQEELADFDLIINATS 194 (278)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------ccc------------eeecccchhccccCCEEEECCc
Confidence 4788999999999 6999999999887665432210 010 1111122 55688999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhh
Q 015610 79 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER 116 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~ 116 (403)
-...-......-..+.+++++++.+-......+.+.+.
T Consensus 195 ~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~ 232 (278)
T PRK00258 195 AGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFLAW 232 (278)
T ss_pred CCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHHHH
Confidence 76521000000001234556666655544334444333
No 215
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=90.07 E-value=1.4 Score=40.54 Aligned_cols=160 Identities=15% Similarity=0.190 Sum_probs=96.3
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHH-----HHcCCCCHHHHHHhhcCccccccccccCCCCeEEEe
Q 015610 2 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSR-----VKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEA 76 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~-----~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViea 76 (403)
+-+||..|+.+|-++.+-=.++ +++ ++++...+.+ .....-+.++.++..+++. +.+..-|+++-|
T Consensus 21 AwGIAk~l~~~GAeL~fTy~~e-~l~---krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~-----~~~g~lD~lVHs 91 (259)
T COG0623 21 AWGIAKALAEQGAELAFTYQGE-RLE---KRVEELAEELGSDLVLPCDVTNDESIDALFATIK-----KKWGKLDGLVHS 91 (259)
T ss_pred HHHHHHHHHHcCCEEEEEeccH-HHH---HHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHH-----HhhCcccEEEEE
Confidence 4589999999999988766655 333 3333333222 1222233444444333331 445667888888
Q ss_pred cCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhc----CCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHH
Q 015610 77 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT----YSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIV 152 (403)
Q Consensus 77 v~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~----~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~ 152 (403)
+.-.. |.++=++..+.-.++=.++-+.|++|...+++.+ ..-.-.+.+-|+.-...+|-.-+|.- .+..+|
T Consensus 92 IaFa~--k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r~vPnYNvMGv---AKAaLE 166 (259)
T COG0623 92 IAFAP--KEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSERVVPNYNVMGV---AKAALE 166 (259)
T ss_pred eccCC--hHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccceeecCCCchhHH---HHHHHH
Confidence 86654 4444444444444555566677888888887775 23335777777765555565555554 566677
Q ss_pred HHHHHH-HHcCCCcEEecc-cchhh
Q 015610 153 DLLDIG-KKIKKTPIVVGN-CTGFA 175 (403)
Q Consensus 153 ~~~~l~-~~lGk~~v~~~d-~~G~i 175 (403)
....++ ..+|+.-|.|+. +.|=|
T Consensus 167 asvRyLA~dlG~~gIRVNaISAGPI 191 (259)
T COG0623 167 ASVRYLAADLGKEGIRVNAISAGPI 191 (259)
T ss_pred HHHHHHHHHhCccCeEEeeecccch
Confidence 666655 569999999865 34433
No 216
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=89.97 E-value=1.1 Score=35.70 Aligned_cols=85 Identities=19% Similarity=0.224 Sum_probs=56.1
Q ss_pred HHHHHHHH--CCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcccc-ccc----cccCCCCeEEEe
Q 015610 4 GIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDY----ESFKDVDMVIEA 76 (403)
Q Consensus 4 ~iA~~la~--~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~----~~~~~aDlViea 76 (403)
.++..+++ .|.+|+.+|.|++.++.+++++.+ .+. ..++++. .+. +.....|+|+-.
T Consensus 14 ~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------~~~---------~~~i~~~~~d~~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 14 RLSIALARLFPGARVVGVDISPEMLEIARERAAE-------EGL---------SDRITFVQGDAEFDPDFLEPFDLVICS 77 (112)
T ss_dssp HHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH-------TTT---------TTTEEEEESCCHGGTTTSSCEEEEEEC
T ss_pred HHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh-------cCC---------CCCeEEEECccccCcccCCCCCEEEEC
Confidence 34566666 899999999999999998765511 111 1233321 122 334568999887
Q ss_pred c-----CCChHHHHHHHHHHHhhCCCCcEEEec
Q 015610 77 I-----IENVSLKQQIFADLEKYCPPHCILASN 104 (403)
Q Consensus 77 v-----~e~~~~K~~~~~~l~~~~~~~~ilasn 104 (403)
- .-+.+.++.+++++.+.++|+.++.-+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 6 222256788899999999998887643
No 217
>PLN02494 adenosylhomocysteinase
Probab=89.81 E-value=1.3 Score=45.25 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
+|+++|..+...|.+|+++|+++.....+. ..|.- .. ++ ++++.+|+||++...
T Consensus 265 IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-----------~~G~~-------------vv-~leEal~~ADVVI~tTGt 319 (477)
T PLN02494 265 VGKGCAAAMKAAGARVIVTEIDPICALQAL-----------MEGYQ-------------VL-TLEDVVSEADIFVTTTGN 319 (477)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhhHHHH-----------hcCCe-------------ec-cHHHHHhhCCEEEECCCC
Confidence 589999999889999999999997654442 23321 11 22 456789999986543
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecC
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNT 105 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasnt 105 (403)
. ..+..+..+.++++++++..+
T Consensus 320 ~----~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 320 K----DIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred c----cchHHHHHhcCCCCCEEEEcC
Confidence 2 333455556799999998443
No 218
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.79 E-value=0.41 Score=46.75 Aligned_cols=99 Identities=18% Similarity=0.084 Sum_probs=56.7
Q ss_pred ChHHHHHHHHHCCC-------ceEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHH-HhhcCccc-cccccccCC
Q 015610 1 MGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLTG-VLDYESFKD 69 (403)
Q Consensus 1 MG~~iA~~la~~G~-------~V~l~d~~~--~~l~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~~-~~~~~~~~~ 69 (403)
+|..+|..++..|+ +++|+|+++ +.++.- .++-.+.. ..+...+. ..+++++++
T Consensus 12 VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~---------------~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 12 IGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGV---------------VMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred HHHHHHHHHHhCCccCCCCceEEEEEecCCccCcccee---------------eeehhhhcccccCCcEEecChHHHhCC
Confidence 47889998888664 499999987 432111 11111111 00111112 345689999
Q ss_pred CCeEEEecCC--------------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhh
Q 015610 70 VDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER 116 (403)
Q Consensus 70 aDlVieav~e--------------~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~ 116 (403)
||+||-+.-- +..+-+++..+|.+.++|++++...| -|++-++..
T Consensus 77 aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~ 135 (323)
T cd00704 77 VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALI 135 (323)
T ss_pred CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHH
Confidence 9999976533 22233444456777777888877643 576644433
No 219
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=89.45 E-value=0.87 Score=47.03 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
||.+++..|+..|++|+++|+++++++...+.+ .....+ ..+...+.++|+||.|+|..
T Consensus 343 iG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~--------~~~~~~-------------~~~~~~l~~~DiVInatP~g 401 (477)
T PRK09310 343 AAKAIATTLARAGAELLIFNRTKAHAEALASRC--------QGKAFP-------------LESLPELHRIDIIINCLPPS 401 (477)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------ccceec-------------hhHhcccCCCCEEEEcCCCC
Confidence 588999999999999999999988765543211 001110 11223467899999999988
Q ss_pred hHH
Q 015610 81 VSL 83 (403)
Q Consensus 81 ~~~ 83 (403)
..+
T Consensus 402 ~~~ 404 (477)
T PRK09310 402 VTI 404 (477)
T ss_pred Ccc
Confidence 754
No 220
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.19 E-value=1.1 Score=43.78 Aligned_cols=100 Identities=16% Similarity=0.099 Sum_probs=56.0
Q ss_pred hHHHHHHHHHCC-------CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH-HhhcCccccccc-cccCCCCe
Q 015610 2 GSGIATALILSN-------YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLTGVLDY-ESFKDVDM 72 (403)
Q Consensus 2 G~~iA~~la~~G-------~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~~~~~~-~~~~~aDl 72 (403)
|+.+|..|+..| .+|+++|+++.. +.+.. -.++-.+.. ....+++...++ +++++||+
T Consensus 15 G~~la~~L~~~~~~~~~~~~el~L~D~~~~~-~~~~g------------~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 15 AYSLLPMIAKGDVFGPDQPVILHLLDIPPAL-KALEG------------VVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred HHHHHHHHHhCcccCCCCCcEEEEEEcCCcc-ccccc------------eeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 788888888754 489999997641 11110 011111110 112233334554 88999999
Q ss_pred EEEecCCCh-------H-------HHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhh
Q 015610 73 VIEAIIENV-------S-------LKQQIFADLEKYCPPHCILASNTSTIDLNLIGER 116 (403)
Q Consensus 73 Vieav~e~~-------~-------~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~ 116 (403)
||-+.--.. + +-+.+..++.++++|++++..-| -|++-++..
T Consensus 82 VI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~ 137 (325)
T cd01336 82 AILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG--NPANTNALI 137 (325)
T ss_pred EEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec--CcHHHHHHH
Confidence 998654311 1 11445556777777888877544 366544433
No 221
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.12 E-value=1.6 Score=42.37 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=48.7
Q ss_pred hHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcccc-c-c--ccccCCCCeEEE
Q 015610 2 GSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-L-D--YESFKDVDMVIE 75 (403)
Q Consensus 2 G~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~-~--~~~~~~aDlVie 75 (403)
|+.+|..++..|+ +++|+|++ .+...+++ ...+. ...+++.. . + ++++++||+||-
T Consensus 13 G~~~a~~l~~~~~~~elvLiDi~-~a~g~alD---------L~~~~--------~~~~i~~~~~~~~~y~~~~daDivvi 74 (310)
T cd01337 13 GQPLSLLLKLNPLVSELALYDIV-NTPGVAAD---------LSHIN--------TPAKVTGYLGPEELKKALKGADVVVI 74 (310)
T ss_pred HHHHHHHHHhCCCCcEEEEEecC-ccceeehH---------hHhCC--------CcceEEEecCCCchHHhcCCCCEEEE
Confidence 7889999988885 89999998 22111110 01110 00134432 3 2 699999999997
Q ss_pred ecCCC--------------hHHHHHHHHHHHhhCCCCcEEEec
Q 015610 76 AIIEN--------------VSLKQQIFADLEKYCPPHCILASN 104 (403)
Q Consensus 76 av~e~--------------~~~K~~~~~~l~~~~~~~~ilasn 104 (403)
+.--. .++-+++...|.++ .|++++..-
T Consensus 75 taG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivv 116 (310)
T cd01337 75 PAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILII 116 (310)
T ss_pred eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEc
Confidence 65432 22333333456666 568877643
No 222
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=89.05 E-value=1.5 Score=40.14 Aligned_cols=86 Identities=19% Similarity=0.138 Sum_probs=50.7
Q ss_pred HHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH----HHHH-hhcCccc-cccccc-----cCCCCeE
Q 015610 5 IATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE----KFEK-TISLLTG-VLDYES-----FKDVDMV 73 (403)
Q Consensus 5 iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~----~~~~-~~~~i~~-~~~~~~-----~~~aDlV 73 (403)
-|..||..|++|+.+|.|+.+++.+.+ +.|..... .... .-.++++ ..|+.. ...-|.|
T Consensus 48 da~~LA~~G~~V~gvD~S~~Ai~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i 117 (213)
T TIGR03840 48 DLAWLAEQGHRVLGVELSEIAVEQFFA----------ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAV 117 (213)
T ss_pred HHHHHHhCCCeEEEEeCCHHHHHHHHH----------HcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEE
Confidence 467889999999999999999987532 12210000 0000 0012221 223211 1235888
Q ss_pred EEec---CCChHHHHHHHHHHHhhCCCCcE
Q 015610 74 IEAI---IENVSLKQQIFADLEKYCPPHCI 100 (403)
Q Consensus 74 ieav---~e~~~~K~~~~~~l~~~~~~~~i 100 (403)
+++. .=+.+.+...++.+.+.++|+..
T Consensus 118 ~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~ 147 (213)
T TIGR03840 118 YDRAALIALPEEMRQRYAAHLLALLPPGAR 147 (213)
T ss_pred EechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence 8853 23455678889999999999874
No 223
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=89.00 E-value=0.9 Score=42.00 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=51.9
Q ss_pred HHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHhhcCcc-ccccc-------cccCCCCeEEE-
Q 015610 6 ATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKK-GKMTQEKFEKTISLLT-GVLDY-------ESFKDVDMVIE- 75 (403)
Q Consensus 6 A~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~-g~~~~~~~~~~~~~i~-~~~~~-------~~~~~aDlVie- 75 (403)
+..||..||+|+.+|.|+.+++.+.++.. +.--+.. +..+. .. -.+++ ...|+ +.+...|+|++
T Consensus 58 ~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~--~~~~~~~~~~~~~--~~--~~~i~~~~gD~f~l~~~~~~~~~fD~VyDr 131 (226)
T PRK13256 58 MLFFLSKGVKVIGIELSEKAVLSFFSQNT--INYEVIHGNDYKL--YK--GDDIEIYVADIFNLPKIANNLPVFDIWYDR 131 (226)
T ss_pred HHHHHhCCCcEEEEecCHHHHHHHHHHcC--CCcceecccccce--ec--cCceEEEEccCcCCCccccccCCcCeeeee
Confidence 56789999999999999999988753110 0000000 00000 00 00111 12222 12346799888
Q ss_pred ----ecCCChHHHHHHHHHHHhhCCCCcEEE
Q 015610 76 ----AIIENVSLKQQIFADLEKYCPPHCILA 102 (403)
Q Consensus 76 ----av~e~~~~K~~~~~~l~~~~~~~~ila 102 (403)
++| .+.+....+.+.+.++|++.+.
T Consensus 132 a~~~Alp--p~~R~~Y~~~l~~lL~pgg~ll 160 (226)
T PRK13256 132 GAYIALP--NDLRTNYAKMMLEVCSNNTQIL 160 (226)
T ss_pred hhHhcCC--HHHHHHHHHHHHHHhCCCcEEE
Confidence 454 4568889999999999976655
No 224
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=88.87 E-value=13 Score=36.54 Aligned_cols=123 Identities=19% Similarity=0.149 Sum_probs=65.4
Q ss_pred HHHHHHHH-CCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc---cccCC-CCeEEEecC
Q 015610 4 GIATALIL-SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY---ESFKD-VDMVIEAII 78 (403)
Q Consensus 4 ~iA~~la~-~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~---~~~~~-aDlVieav~ 78 (403)
.||.++|+ .|.+|+.+|+++++++.++ +.|+- .+..+.+. +.+++ +|+||++++
T Consensus 180 h~avQ~Aka~ga~Via~~~~~~K~e~a~-----------~lGAd----------~~i~~~~~~~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 180 HMAVQYAKAMGAEVIAITRSEEKLELAK-----------KLGAD----------HVINSSDSDALEAVKEIADAIIDTVG 238 (339)
T ss_pred HHHHHHHHHcCCeEEEEeCChHHHHHHH-----------HhCCc----------EEEEcCCchhhHHhHhhCcEEEECCC
Confidence 46777777 6999999999999998885 44531 01111111 33322 888888888
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEecCCCCCH-HHHHhhcCCCCcEEEEecCCCCCCCCeEEEecCCCCCHHHHHHHHHH
Q 015610 79 ENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDI 157 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~~~~~ilasntStl~~-~~la~~~~~~~r~ig~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l 157 (403)
+..+.+. +..+-+.++++.- . ++. ..+. -.+.+. ..++-..|+.+-..+..-++.+.+|
T Consensus 239 -~~~~~~~----l~~l~~~G~~v~v-G--~~~~~~~~----------~~~~~~--li~~~~~i~GS~~g~~~d~~e~l~f 298 (339)
T COG1064 239 -PATLEPS----LKALRRGGTLVLV-G--LPGGGPIP----------LLPAFL--LILKEISIVGSLVGTRADLEEALDF 298 (339)
T ss_pred -hhhHHHH----HHHHhcCCEEEEE-C--CCCCcccC----------CCCHHH--hhhcCeEEEEEecCCHHHHHHHHHH
Confidence 5544332 2222334444431 1 111 0000 000000 1223345555555566777777788
Q ss_pred HHHcCCCcEE
Q 015610 158 GKKIKKTPIV 167 (403)
Q Consensus 158 ~~~lGk~~v~ 167 (403)
...-+-.|.+
T Consensus 299 ~~~g~Ikp~i 308 (339)
T COG1064 299 AAEGKIKPEI 308 (339)
T ss_pred HHhCCceeeE
Confidence 8777766665
No 225
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=88.81 E-value=1.1 Score=38.10 Aligned_cols=71 Identities=10% Similarity=0.101 Sum_probs=47.6
Q ss_pred CCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccc----cc-cccCCCCeEEEecCCChHHHHH
Q 015610 12 SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL----DY-ESFKDVDMVIEAIIENVSLKQQ 86 (403)
Q Consensus 12 ~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~----~~-~~~~~aDlVieav~e~~~~K~~ 86 (403)
.|.+|+++.++...-+.....+. ++|. .++... ++ +.+++||+||.++.-..-++.+
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~-------~~ga-----------tV~~~~~~t~~l~~~v~~ADIVvsAtg~~~~i~~~ 88 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQ-------RDGA-----------TVYSCDWKTIQLQSKVHDADVVVVGSPKPEKVPTE 88 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHH-------HCCC-----------EEEEeCCCCcCHHHHHhhCCEEEEecCCCCccCHH
Confidence 46799999999987665543222 2342 122222 44 5689999999999987555554
Q ss_pred HHHHHHhhCCCCcEEEecCCC
Q 015610 87 IFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 87 ~~~~l~~~~~~~~ilasntSt 107 (403)
.++|++++.+-+..
T Consensus 89 -------~ikpGa~Vidvg~~ 102 (140)
T cd05212 89 -------WIKPGATVINCSPT 102 (140)
T ss_pred -------HcCCCCEEEEcCCC
Confidence 47899999875544
No 226
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=88.73 E-value=0.64 Score=44.58 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
+|++++..|+..|. +|+++|+++++.+...+.+.... ... .+....++ +.+.++|+||.|+|
T Consensus 138 aaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~------~~~----------~~~~~~~~~~~~~~aDiVInaTp 201 (284)
T PRK12549 138 AGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF------PAA----------RATAGSDLAAALAAADGLVHATP 201 (284)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC------CCe----------EEEeccchHhhhCCCCEEEECCc
Confidence 47889999999998 79999999987765543321110 000 01111222 35678899999887
Q ss_pred CC
Q 015610 79 EN 80 (403)
Q Consensus 79 e~ 80 (403)
-.
T Consensus 202 ~G 203 (284)
T PRK12549 202 TG 203 (284)
T ss_pred CC
Confidence 55
No 227
>PLN00106 malate dehydrogenase
Probab=88.73 E-value=1.9 Score=42.06 Aligned_cols=83 Identities=16% Similarity=0.263 Sum_probs=47.6
Q ss_pred hHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccc-ccc---ccccCCCCeEEE
Q 015610 2 GSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD---YESFKDVDMVIE 75 (403)
Q Consensus 2 G~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---~~~~~~aDlVie 75 (403)
|+.+|..++..|+ +++++|+++ ....+++ + ... .. ..++.. +.+ ++++++||+||-
T Consensus 31 G~~~a~~l~~~~~~~el~L~Di~~-~~g~a~D-l--------~~~-------~~-~~~i~~~~~~~d~~~~l~~aDiVVi 92 (323)
T PLN00106 31 GQPLSLLMKMNPLVSELHLYDIAN-TPGVAAD-V--------SHI-------NT-PAQVRGFLGDDQLGDALKGADLVII 92 (323)
T ss_pred HHHHHHHHHhCCCCCEEEEEecCC-CCeeEch-h--------hhC-------Cc-CceEEEEeCCCCHHHHcCCCCEEEE
Confidence 7889999988776 899999988 2111110 0 000 00 012322 223 488999999998
Q ss_pred ecCC--------------ChHHHHHHHHHHHhhCCCCcEEEe
Q 015610 76 AIIE--------------NVSLKQQIFADLEKYCPPHCILAS 103 (403)
Q Consensus 76 av~e--------------~~~~K~~~~~~l~~~~~~~~ilas 103 (403)
+.-. +..+-+++...+.++. |++++..
T Consensus 93 tAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aiviv 133 (323)
T PLN00106 93 PAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNI 133 (323)
T ss_pred eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE
Confidence 7643 2223344445566665 6666653
No 228
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.37 E-value=0.6 Score=46.59 Aligned_cols=84 Identities=21% Similarity=0.192 Sum_probs=53.5
Q ss_pred ChHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecC
Q 015610 1 MGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G-~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
.|+.+|..|+++| ++|++.|+++++++++...+. +.++..+.|. .-...+ +.+++.|+||.|+|
T Consensus 12 Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~~~vD~-----~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 12 VGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEALQVDA-----ADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred hHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccceeEEecc-----cChHHHHHHHhcCCEEEEeCC
Confidence 3889999999999 999999999999988753221 1121111110 001112 55788899999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEe
Q 015610 79 ENVSLKQQIFADLEKYCPPHCILAS 103 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~~~~~ilas 103 (403)
-.... .+ +...++-++-..+
T Consensus 78 ~~~~~--~i---~ka~i~~gv~yvD 97 (389)
T COG1748 78 PFVDL--TI---LKACIKTGVDYVD 97 (389)
T ss_pred chhhH--HH---HHHHHHhCCCEEE
Confidence 98765 22 3334455666665
No 229
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=88.35 E-value=1.2 Score=43.46 Aligned_cols=73 Identities=8% Similarity=0.002 Sum_probs=47.2
Q ss_pred HCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCCChHHHHHHHH
Q 015610 11 LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFA 89 (403)
Q Consensus 11 ~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e~~~~K~~~~~ 89 (403)
....+|.+||+++++.+...++++ +.|. .+....+. +++++||+||.|+|... .+|.
T Consensus 151 ~~~~~v~V~~r~~~~~~~~~~~~~-------~~g~-----------~v~~~~~~~eav~~aDiVitaT~s~~----P~~~ 208 (325)
T TIGR02371 151 FDLEEVSVYCRTPSTREKFALRAS-------DYEV-----------PVRAATDPREAVEGCDILVTTTPSRK----PVVK 208 (325)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-------hhCC-----------cEEEeCCHHHHhccCCEEEEecCCCC----cEec
Confidence 346699999999999876654332 1121 12234455 77899999999998753 2321
Q ss_pred HHHhhCCCCcEEEecCCC
Q 015610 90 DLEKYCPPHCILASNTST 107 (403)
Q Consensus 90 ~l~~~~~~~~ilasntSt 107 (403)
.+.++|++.|..-.|.
T Consensus 209 --~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 209 --ADWVSEGTHINAIGAD 224 (325)
T ss_pred --HHHcCCCCEEEecCCC
Confidence 2346888888765544
No 230
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=88.20 E-value=1.7 Score=40.19 Aligned_cols=87 Identities=23% Similarity=0.277 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcccccc---c-c-ccCCCCeEEE
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD---Y-E-SFKDVDMVIE 75 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~---~-~-~~~~aDlVie 75 (403)
+|.++|..|...||+|+++|.+++.+++..+ ..++..+-.| -.++ + + .+.++|.|+-
T Consensus 11 vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~---~~~~~~~v~g---------------d~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 11 VGRSVARELSEEGHNVVLIDRDEERVEEFLA---DELDTHVVIG---------------DATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred HHHHHHHHHHhCCCceEEEEcCHHHHHHHhh---hhcceEEEEe---------------cCCCHHHHHhcCCCcCCEEEE
Confidence 4899999999999999999999999877421 0000000001 0111 2 2 3689999999
Q ss_pred ecCCChHHHHHHHHHHH-hhCCCCcEEEecCCC
Q 015610 76 AIIENVSLKQQIFADLE-KYCPPHCILASNTST 107 (403)
Q Consensus 76 av~e~~~~K~~~~~~l~-~~~~~~~ilasntSt 107 (403)
++.+|. -.-++..+. +......+++-..|.
T Consensus 73 ~t~~d~--~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 73 ATGNDE--VNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred eeCCCH--HHHHHHHHHHHhcCCCcEEEEecCH
Confidence 998874 344444544 335666777654443
No 231
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=87.97 E-value=1.1 Score=41.39 Aligned_cols=87 Identities=21% Similarity=0.192 Sum_probs=52.4
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcccccccccc-CCCCeEE-----E
Q 015610 2 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF-KDVDMVI-----E 75 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~aDlVi-----e 75 (403)
|+.++..+|+.|..|+..|.+++.++-++... .+.|.. -+ . +...+.+++.. ..-|+|+ |
T Consensus 70 gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha-------~e~gv~-i~-y-----~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 70 GGILSEPLARLGASVTGIDASEKPIEVAKLHA-------LESGVN-ID-Y-----RQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred ccHhhHHHHHCCCeeEEecCChHHHHHHHHhh-------hhcccc-cc-c-----hhhhHHHHHhcCCCccEEEEhhHHH
Confidence 56788999999999999999999998886322 122211 00 0 00001111111 2345554 3
Q ss_pred ecCCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 015610 76 AIIENVSLKQQIFADLEKYCPPHCILASNTS 106 (403)
Q Consensus 76 av~e~~~~K~~~~~~l~~~~~~~~ilasntS 106 (403)
=||.. +.++....+.++|+.++.-+|-
T Consensus 136 Hv~dp----~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 136 HVPDP----ESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred ccCCH----HHHHHHHHHHcCCCcEEEEecc
Confidence 34443 3477788899999999986443
No 232
>PLN00135 malate dehydrogenase
Probab=87.74 E-value=2.4 Score=41.17 Aligned_cols=87 Identities=15% Similarity=0.067 Sum_probs=50.3
Q ss_pred CCceEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcccccc-ccccCCCCeEEEecCCC---------
Q 015610 13 NYPVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFKDVDMVIEAIIEN--------- 80 (403)
Q Consensus 13 G~~V~l~d~~~--~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~~aDlVieav~e~--------- 80 (403)
.+..+|+|+++ +.++.-.-.+....- ..+.+++.+.+ ++++++||+||-+.--.
T Consensus 13 ~~~l~L~D~~~~~~~a~g~~~Dl~da~~--------------~~~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~d 78 (309)
T PLN00135 13 PVILHMLDIPPAAEALNGVKMELIDAAF--------------PLLKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKD 78 (309)
T ss_pred eEEEEEecCcccccchhhHHHHHHhhhH--------------HhcCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHH
Confidence 45789999988 664332211211110 11123443455 79999999999876542
Q ss_pred -----hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHh
Q 015610 81 -----VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGE 115 (403)
Q Consensus 81 -----~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~ 115 (403)
..+-+.+..+|.+++.|++++...| -|++-++.
T Consensus 79 ll~~N~~I~~~i~~~i~~~~~p~aivivvs--NPvDv~t~ 116 (309)
T PLN00135 79 VMSKNVSIYKSQASALEKHAAPDCKVLVVA--NPANTNAL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEEeC--CcHHHHHH
Confidence 2223344445666678899887644 56654443
No 233
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=87.55 E-value=0.33 Score=48.35 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=50.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHhhcCccccccc-cccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
+|...+..+...|.+|+++|+++++++.+.. ..+. +. .......++ +.++++|+||.|++
T Consensus 178 vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~----------~~g~~v~--------~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 178 VGTNAAKMANGLGATVTILDINIDRLRQLDA----------EFGGRIH--------TRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----------hcCceeE--------eccCCHHHHHHHHccCCEEEEccc
Confidence 4778888888889999999999988765431 1111 00 000001112 45678999999984
Q ss_pred CChH-HHHHHHHHHHhhCCCCcEEEecC
Q 015610 79 ENVS-LKQQIFADLEKYCPPHCILASNT 105 (403)
Q Consensus 79 e~~~-~K~~~~~~l~~~~~~~~ilasnt 105 (403)
-... ...-+-++..+.++++++|.+-+
T Consensus 240 ~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 240 IPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 3111 01111233445578888887643
No 234
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=87.11 E-value=0.4 Score=42.06 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=25.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEA 28 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~ 28 (403)
+|..++..|.+.|++|+++-|+++.++.
T Consensus 10 vG~~l~~~L~~~~~~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 10 VGRALAKQLLRRGHEVTALVRSPSKAED 37 (183)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred HHHHHHHHHHHCCCEEEEEecCchhccc
Confidence 4889999999999999999999997654
No 235
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=87.05 E-value=3.2 Score=39.27 Aligned_cols=77 Identities=23% Similarity=0.248 Sum_probs=46.8
Q ss_pred ChHHHHHHHHHC--CCc-eEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEe
Q 015610 1 MGSGIATALILS--NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEA 76 (403)
Q Consensus 1 MG~~iA~~la~~--G~~-V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViea 76 (403)
||..++..+.+. +++ +.++|+++++.+...+ ..+. ...+++ +.+.++|+|++|
T Consensus 12 iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~----------~~~~-------------~~~~~~~ell~~~DvVvi~ 68 (265)
T PRK13304 12 IASLITKAILSGRINAELYAFYDRNLEKAENLAS----------KTGA-------------KACLSIDELVEDVDLVVEC 68 (265)
T ss_pred HHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHH----------hcCC-------------eeECCHHHHhcCCCEEEEc
Confidence 688888888775 455 5579999987665421 1111 123445 334889999999
Q ss_pred cCCChHHHHHHHHHHHhhCCCCcEEEe
Q 015610 77 IIENVSLKQQIFADLEKYCPPHCILAS 103 (403)
Q Consensus 77 v~e~~~~K~~~~~~l~~~~~~~~ilas 103 (403)
.+.+. -.++..++.+ ...+.++.|
T Consensus 69 a~~~~--~~~~~~~al~-~Gk~Vvv~s 92 (265)
T PRK13304 69 ASVNA--VEEVVPKSLE-NGKDVIIMS 92 (265)
T ss_pred CChHH--HHHHHHHHHH-cCCCEEEEc
Confidence 98654 2344444433 345666644
No 236
>PRK08618 ornithine cyclodeaminase; Validated
Probab=86.96 E-value=1.2 Score=43.60 Aligned_cols=82 Identities=11% Similarity=0.103 Sum_probs=50.1
Q ss_pred hHHHHHHHH-HCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecC
Q 015610 2 GSGIATALI-LSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 2 G~~iA~~la-~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
|...+..++ ..+. +|.++|+++++.++..++++..+ + + ++....++ +++.++|+||.|.|
T Consensus 139 a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-~----------~~~~~~~~~~~~~~aDiVi~aT~ 201 (325)
T PRK08618 139 AKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-T----------EIYVVNSADEAIEEADIIVTVTN 201 (325)
T ss_pred HHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-C----------cEEEeCCHHHHHhcCCEEEEccC
Confidence 344444443 3353 89999999998776654443211 1 1 12234444 56789999999998
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 79 ENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
... .++. +.+++++.|.+-.|.
T Consensus 202 s~~----p~i~---~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 202 AKT----PVFS---EKLKKGVHINAVGSF 223 (325)
T ss_pred CCC----cchH---HhcCCCcEEEecCCC
Confidence 662 3443 456888888766554
No 237
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=86.15 E-value=4.8 Score=42.89 Aligned_cols=87 Identities=15% Similarity=0.065 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc--cccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~~aDlVieav~ 78 (403)
+|+.+|..|.+.|++|+++|.|++.++.++ +.|.. ......+-...+ ..+.+||.||-+++
T Consensus 411 ~G~~va~~L~~~g~~vvvID~d~~~v~~~~-----------~~g~~------v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 411 FGQVIGRLLMANKMRITVLERDISAVNLMR-----------KYGYK------VYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHH-----------hCCCe------EEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 478899999999999999999999988774 23321 000000000011 33678999999988
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEecC
Q 015610 79 ENVSLKQQIFADLEKYCPPHCILASNT 105 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~~~~~ilasnt 105 (403)
++.+-.. +...+.+..++-.|++-..
T Consensus 474 d~~~n~~-i~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 474 EPEDTMK-IVELCQQHFPHLHILARAR 499 (601)
T ss_pred CHHHHHH-HHHHHHHHCCCCeEEEEeC
Confidence 8754332 2223444444446665433
No 238
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=85.91 E-value=1.4 Score=42.29 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRAN 36 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~ 36 (403)
+|.+.|..||+.|+.|+++.|++++|++..+.|+..
T Consensus 61 IGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~ 96 (312)
T KOG1014|consen 61 IGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEK 96 (312)
T ss_pred chHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999887666443
No 239
>PLN03075 nicotianamine synthase; Provisional
Probab=85.76 E-value=3 Score=40.17 Aligned_cols=106 Identities=13% Similarity=0.054 Sum_probs=63.3
Q ss_pred CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccc-cc----cccCCCCeEEEecCCC--hHHHH
Q 015610 13 NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-DY----ESFKDVDMVIEAIIEN--VSLKQ 85 (403)
Q Consensus 13 G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~----~~~~~aDlVieav~e~--~~~K~ 85 (403)
+-.++.+|.++++.+.|++.+.+. .| + .+++++.. |. ....+-|+|+-.+--+ .+-|+
T Consensus 149 ~~~~~giD~d~~ai~~Ar~~~~~~------~g-L--------~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~ 213 (296)
T PLN03075 149 TTSFHNFDIDPSANDVARRLVSSD------PD-L--------SKRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKV 213 (296)
T ss_pred CCEEEEEeCCHHHHHHHHHHhhhc------cC-c--------cCCcEEEECchhhcccccCCcCEEEEecccccccccHH
Confidence 336999999999999887544221 11 1 01233321 11 2346789999986322 24599
Q ss_pred HHHHHHHhhCCCCcEEEecCCCCCHHHHHh-----hcCCCCcEEEEecCCCCC
Q 015610 86 QIFADLEKYCPPHCILASNTSTIDLNLIGE-----RTYSKDRIVGAHFFSPAH 133 (403)
Q Consensus 86 ~~~~~l~~~~~~~~ilasntStl~~~~la~-----~~~~~~r~ig~hf~~P~~ 133 (403)
+++..+.+.++|+.++..-++.-..+-+.. .+..-+...-+|+.+++.
T Consensus 214 ~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~v~ 266 (296)
T PLN03075 214 KVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDEVI 266 (296)
T ss_pred HHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCCce
Confidence 999999999999999986553311111111 112223455667777764
No 240
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=85.57 E-value=1.3 Score=41.95 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=30.7
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA 35 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~ 35 (403)
+|..+|..||++|++|+|+.|+.+++++..++|++
T Consensus 18 IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 18 IGAELAKQLARRGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 48899999999999999999999999887665544
No 241
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=85.27 E-value=2 Score=42.11 Aligned_cols=81 Identities=25% Similarity=0.240 Sum_probs=56.8
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCCh
Q 015610 2 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENV 81 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~~ 81 (403)
|+++|..+..-|-+|++.+++|-..-+|. =.| .++..-.++...+|++|.|.-..-
T Consensus 221 GrG~A~~~rg~GA~ViVtEvDPI~AleA~-----------MdG-------------f~V~~m~~Aa~~gDifiT~TGnkd 276 (420)
T COG0499 221 GRGIAMRLRGMGARVIVTEVDPIRALEAA-----------MDG-------------FRVMTMEEAAKTGDIFVTATGNKD 276 (420)
T ss_pred chHHHHHhhcCCCeEEEEecCchHHHHHh-----------hcC-------------cEEEEhHHhhhcCCEEEEccCCcC
Confidence 89999999999999999999996543331 112 223333467788999999988765
Q ss_pred HHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 015610 82 SLKQQIFADLEKYCPPHCILASNTSTIDLN 111 (403)
Q Consensus 82 ~~K~~~~~~l~~~~~~~~ilasntStl~~~ 111 (403)
.+..+-|. .+++++|++ |.-.+..+
T Consensus 277 Vi~~eh~~----~MkDgaIl~-N~GHFd~E 301 (420)
T COG0499 277 VIRKEHFE----KMKDGAILA-NAGHFDVE 301 (420)
T ss_pred ccCHHHHH----hccCCeEEe-ccccccee
Confidence 55555443 468899997 66555543
No 242
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=85.25 E-value=3.2 Score=43.74 Aligned_cols=85 Identities=12% Similarity=0.128 Sum_probs=52.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc--cccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~~aDlVieav~ 78 (403)
+|+.+|..|.+.|++|+++|.|++.+++++ +.|.. ......+-...+ ..+++||.|+-+++
T Consensus 428 ~G~~la~~L~~~g~~vvvId~d~~~~~~~~-----------~~g~~------~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 428 VGSLLGEKLLAAGIPLVVIETSRTRVDELR-----------ERGIR------AVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHH-----------HCCCe------EEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 478999999999999999999999988774 22310 000111001111 23679999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEe
Q 015610 79 ENVSLKQQIFADLEKYCPPHCILAS 103 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~~~~~ilas 103 (403)
+|.+...-+. .+.+..+.-.|++-
T Consensus 491 ~~~~~~~iv~-~~~~~~~~~~iiar 514 (558)
T PRK10669 491 NGYEAGEIVA-SAREKRPDIEIIAR 514 (558)
T ss_pred ChHHHHHHHH-HHHHHCCCCeEEEE
Confidence 9865433222 34444444456654
No 243
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=85.18 E-value=3.5 Score=39.39 Aligned_cols=65 Identities=15% Similarity=0.087 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
||++++..|+..|. +|++++|++++.++..+++. ..+.+. .+....+. +.+.++|+||-|+|
T Consensus 136 aarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~-------~~~~~~---------~~~~~~~~~~~~~~~DiVInaTp 199 (282)
T TIGR01809 136 TSRAAVYALASLGVTDITVINRNPDKLSRLVDLGV-------QVGVIT---------RLEGDSGGLAIEKAAEVLVSTVP 199 (282)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhh-------hcCcce---------eccchhhhhhcccCCCEEEECCC
Confidence 57889999999997 79999999987665432211 111110 01000112 34577899999988
Q ss_pred CCh
Q 015610 79 ENV 81 (403)
Q Consensus 79 e~~ 81 (403)
-..
T Consensus 200 ~g~ 202 (282)
T TIGR01809 200 ADV 202 (282)
T ss_pred CCC
Confidence 764
No 244
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=85.01 E-value=1.6 Score=42.62 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=47.9
Q ss_pred hHHHHHHHH-HCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecC
Q 015610 2 GSGIATALI-LSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 2 G~~iA~~la-~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
|...+..++ ..+. +|++|++++++.++..+++.+.+ | + .+...+++ +++.+||+||.|.|
T Consensus 141 A~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-~----------~v~~~~~~~~av~~aDiVvtaT~ 203 (326)
T TIGR02992 141 ARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-I----------DVTAATDPRAAMSGADIIVTTTP 203 (326)
T ss_pred HHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-c----------eEEEeCCHHHHhccCCEEEEecC
Confidence 455666665 3564 79999999998777654442211 2 1 12233444 56789999999988
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEecC
Q 015610 79 ENVSLKQQIFADLEKYCPPHCILASNT 105 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~~~~~ilasnt 105 (403)
.... ++. .+.+++++.+..-.
T Consensus 204 s~~p----~i~--~~~l~~g~~i~~vg 224 (326)
T TIGR02992 204 SETP----ILH--AEWLEPGQHVTAMG 224 (326)
T ss_pred CCCc----Eec--HHHcCCCcEEEeeC
Confidence 6532 221 12356676665433
No 245
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=84.68 E-value=2.2 Score=43.26 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=24.2
Q ss_pred ChHHHHHHHHHCC-CceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSN-YPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G-~~V~l~d~~~~~l~~~ 29 (403)
||..++..|+..| .+|+++|+++++.+..
T Consensus 191 iG~~~a~~L~~~G~~~V~v~~rs~~ra~~l 220 (417)
T TIGR01035 191 MGELVAKHLLRKGVGKILIANRTYERAEDL 220 (417)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 6888999998889 7899999999876543
No 246
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=84.38 E-value=1.4 Score=38.47 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=23.4
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
+.++.||+||-|+.-..-++.+ .+++++++.+...+
T Consensus 75 ~~~~~ADIVVsa~G~~~~i~~~-------~ik~gavVIDvG~~ 110 (160)
T PF02882_consen 75 EITRRADIVVSAVGKPNLIKAD-------WIKPGAVVIDVGIN 110 (160)
T ss_dssp HHHTTSSEEEE-SSSTT-B-GG-------GS-TTEEEEE--CE
T ss_pred ceeeeccEEeeeeccccccccc-------cccCCcEEEecCCc
Confidence 4468899999999887655543 47899999986655
No 247
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=84.20 E-value=7.4 Score=35.35 Aligned_cols=120 Identities=13% Similarity=0.146 Sum_probs=67.2
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCCh
Q 015610 2 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENV 81 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~~ 81 (403)
|..-+..|+..|.+|++++.+...- +..+.+.|.++ .+.-.-..+++.++|+||-| +++.
T Consensus 21 a~rk~~~Ll~~ga~VtVvsp~~~~~----------l~~l~~~~~i~---------~~~~~~~~~dl~~~~lVi~a-t~d~ 80 (205)
T TIGR01470 21 ALRKARLLLKAGAQLRVIAEELESE----------LTLLAEQGGIT---------WLARCFDADILEGAFLVIAA-TDDE 80 (205)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCCHH----------HHHHHHcCCEE---------EEeCCCCHHHhCCcEEEEEC-CCCH
Confidence 3445678889999999998765411 11223444331 01111122567899999977 5555
Q ss_pred HHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCC--CCCCeEEEecCCCCCHHHHHHHHHHHH
Q 015610 82 SLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTSPQVIVDLLDIGK 159 (403)
Q Consensus 82 ~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~--~~~~lvevv~~~~t~~e~~~~~~~l~~ 159 (403)
++...+.... ....|++.+.+... -..|+.|. ..++++.-|.+...+|..-..++.-++
T Consensus 81 ~ln~~i~~~a----~~~~ilvn~~d~~e---------------~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie 141 (205)
T TIGR01470 81 ELNRRVAHAA----RARGVPVNVVDDPE---------------LCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIE 141 (205)
T ss_pred HHHHHHHHHH----HHcCCEEEECCCcc---------------cCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 5666555433 33344442222211 12344443 456777667777788888877776665
Q ss_pred H
Q 015610 160 K 160 (403)
Q Consensus 160 ~ 160 (403)
.
T Consensus 142 ~ 142 (205)
T TIGR01470 142 T 142 (205)
T ss_pred H
Confidence 5
No 248
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=84.10 E-value=3.2 Score=33.41 Aligned_cols=87 Identities=16% Similarity=0.074 Sum_probs=52.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc--cccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~~aDlVieav~ 78 (403)
+|..++..|...+.+|+++|.+++..+.+. +.|.. ......+-...+ ..+.+|+.||-+.+
T Consensus 9 ~~~~i~~~L~~~~~~vvvid~d~~~~~~~~-----------~~~~~------~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 9 IGREIAEQLKEGGIDVVVIDRDPERVEELR-----------EEGVE------VIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHH-----------HTTSE------EEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred HHHHHHHHHHhCCCEEEEEECCcHHHHHHH-----------hcccc------cccccchhhhHHhhcCccccCEEEEccC
Confidence 478899999997779999999999988775 34410 000000000112 34688999999988
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEecC
Q 015610 79 ENVSLKQQIFADLEKYCPPHCILASNT 105 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~~~~~ilasnt 105 (403)
++. ....+...+.+.-+.-.|++-..
T Consensus 72 ~d~-~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 72 DDE-ENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp SHH-HHHHHHHHHHHHTTTSEEEEEES
T ss_pred CHH-HHHHHHHHHHHHCCCCeEEEEEC
Confidence 773 23333333444445556666433
No 249
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=84.00 E-value=1.5 Score=44.22 Aligned_cols=132 Identities=16% Similarity=0.218 Sum_probs=79.1
Q ss_pred CCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC----------C
Q 015610 12 SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE----------N 80 (403)
Q Consensus 12 ~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e----------~ 80 (403)
.+.++.|+|+++++++ .+....++++++-..+ -++..++|. +++.+||+||.++-- .
T Consensus 31 ~~~el~L~Did~~r~~----~i~~~~~~~v~~~g~~--------~kv~~ttd~~eAl~gAdfVi~~~rvG~l~~r~~De~ 98 (442)
T COG1486 31 PVRELALYDIDEERLK----IIAILAKKLVEEAGAP--------VKVEATTDRREALEGADFVITQIRVGGLEAREKDER 98 (442)
T ss_pred CcceEEEEeCCHHHHH----HHHHHHHHHHHhhCCC--------eEEEEecCHHHHhcCCCEEEEEEeeCCcccchhhhc
Confidence 3568999999999977 3445555556543322 246667777 889999999998642 3
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHH-HHHhhcC--CCCcEEEEecCCCCC----------C-CCeEEEecCCCC
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTY--SKDRIVGAHFFSPAH----------V-MPLLEIVRTNQT 146 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntStl~~~-~la~~~~--~~~r~ig~hf~~P~~----------~-~~lvevv~~~~t 146 (403)
..+|.-+++ .+.+.++.|+- +--|+++- +|++.+. .|. .--+.|-||.. . .+.|-+|-++
T Consensus 99 IplkyG~~g--qET~G~GGi~~-glRtIpvildi~~~m~~~~P~-Aw~lNytNP~~~vTeAv~r~~~~~K~VGlCh~~-- 172 (442)
T COG1486 99 IPLKHGLYG--QETNGPGGIFY-GLRTIPVILDIAKDMEKVCPN-AWMLNYTNPAAIVTEAVRRLYPKIKIVGLCHGP-- 172 (442)
T ss_pred cchhhCccc--cccccccHHHh-hcccchHHHHHHHHHHHhCCC-ceEEeccChHHHHHHHHHHhCCCCcEEeeCCch--
Confidence 334555555 45566777743 33445543 6666652 232 33456667763 1 2556666553
Q ss_pred CHHHHHHHHHHHHHcCCCc
Q 015610 147 SPQVIVDLLDIGKKIKKTP 165 (403)
Q Consensus 147 ~~e~~~~~~~l~~~lGk~~ 165 (403)
+-....+++.+|..+
T Consensus 173 ----~g~~~~lAe~L~~~~ 187 (442)
T COG1486 173 ----IGIAMELAEVLGLEP 187 (442)
T ss_pred ----HHHHHHHHHHhCCCc
Confidence 233445666666654
No 250
>PRK12828 short chain dehydrogenase; Provisional
Probab=83.85 E-value=1.4 Score=40.11 Aligned_cols=29 Identities=21% Similarity=0.099 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..++..|++.|++|++.+++++...+.
T Consensus 19 iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (239)
T PRK12828 19 LGRATAAWLAARGARVALIGRGAAPLSQT 47 (239)
T ss_pred HhHHHHHHHHHCCCeEEEEeCChHhHHHH
Confidence 47899999999999999999998766544
No 251
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=83.66 E-value=2.1 Score=34.41 Aligned_cols=84 Identities=14% Similarity=0.101 Sum_probs=53.0
Q ss_pred HHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCCCh
Q 015610 3 SGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENV 81 (403)
Q Consensus 3 ~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e~~ 81 (403)
..|+..|...|.+|.+||.--....... .+. ...++..+++ ++++++|.||.++.-+.
T Consensus 20 ~~l~~~L~~~g~~V~~~DP~v~~~~~~~------------~~~---------~~~~~~~~~~~~~~~~~D~vvl~t~h~~ 78 (106)
T PF03720_consen 20 LELIEELKERGAEVSVYDPYVDEEEIKE------------LGK---------LEGVEVCDDLEEALKGADAVVLATDHDE 78 (106)
T ss_dssp HHHHHHHHHTT-EEEEE-TTSHHHHHHH------------HCH---------HHCEEEESSHHHHHTTESEEEESS--GG
T ss_pred HHHHHHHHHCCCEEEEECCccChHHHHh------------hCC---------ccceEEecCHHHHhcCCCEEEEEecCHH
Confidence 3578889999999999998766543321 000 1124445555 77899999999987553
Q ss_pred HHHHHHHHHHHhhCCCCcEEEecCCCC
Q 015610 82 SLKQQIFADLEKYCPPHCILASNTSTI 108 (403)
Q Consensus 82 ~~K~~~~~~l~~~~~~~~ilasntStl 108 (403)
.+..-+.++...+.+..+|.+....+
T Consensus 79 -f~~l~~~~~~~~~~~~~~iiD~~~~~ 104 (106)
T PF03720_consen 79 -FRELDWEEIAKLMRKPPVIIDGRNIL 104 (106)
T ss_dssp -GGCCGHHHHHHHSCSSEEEEESSSTS
T ss_pred -HhccCHHHHHHhcCCCCEEEECcccc
Confidence 44444556777777888888866544
No 252
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=83.54 E-value=2.8 Score=36.90 Aligned_cols=65 Identities=23% Similarity=0.218 Sum_probs=42.9
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCCh
Q 015610 2 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENV 81 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~~ 81 (403)
|..+|.+|...|.+|++.+++.+.+. +.+++||+||-|++-..
T Consensus 57 G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~aDiVIsat~~~~ 99 (168)
T cd01080 57 GKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQADIVIVAVGKPG 99 (168)
T ss_pred HHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhhCCEEEEcCCCCc
Confidence 55577777777878888887632111 34678999999998764
Q ss_pred HHHHHHHHHHHhhCCCCcEEEecCCCCCH
Q 015610 82 SLKQQIFADLEKYCPPHCILASNTSTIDL 110 (403)
Q Consensus 82 ~~K~~~~~~l~~~~~~~~ilasntStl~~ 110 (403)
-++.+. +++++++.+-++.-.+
T Consensus 100 ii~~~~-------~~~~~viIDla~prdv 121 (168)
T cd01080 100 LVKGDM-------VKPGAVVIDVGINRVP 121 (168)
T ss_pred eecHHH-------ccCCeEEEEccCCCcc
Confidence 344432 4567888876655444
No 253
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=83.53 E-value=1.3 Score=40.70 Aligned_cols=35 Identities=31% Similarity=0.390 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA 35 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~ 35 (403)
+|..||..|++.|++|++.+++++.++...+.+.+
T Consensus 8 iG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~ 42 (241)
T PF13561_consen 8 IGRAIARALAEEGANVILTDRNEEKLADALEELAK 42 (241)
T ss_dssp HHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHH
Confidence 58999999999999999999999987666544433
No 254
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.50 E-value=3.2 Score=39.77 Aligned_cols=63 Identities=16% Similarity=0.242 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
+|.++|..|.+.|..|++++.....+. +.+++||+||-|++-.
T Consensus 170 VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~ADIVIsAvg~p 212 (286)
T PRK14175 170 VGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKDADVIVSAVGKP 212 (286)
T ss_pred hHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhhCCEEEECCCCC
Confidence 477788888777888887775321110 3467899999999875
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
--++. +.+++++++.+-.+.
T Consensus 213 ~~i~~-------~~vk~gavVIDvGi~ 232 (286)
T PRK14175 213 GLVTK-------DVVKEGAVIIDVGNT 232 (286)
T ss_pred cccCH-------HHcCCCcEEEEcCCC
Confidence 32332 246889999987654
No 255
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=83.45 E-value=3.3 Score=42.03 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=38.7
Q ss_pred ChHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
||..++..+...|. +|++++++++..+...+ +.|. + .....+. +.+.++|+||.|++
T Consensus 193 iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~----------~~g~-~----------~~~~~~~~~~l~~aDvVI~aT~ 251 (423)
T PRK00045 193 MGELVAKHLAEKGVRKITVANRTLERAEELAE----------EFGG-E----------AIPLDELPEALAEADIVISSTG 251 (423)
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH----------HcCC-c----------EeeHHHHHHHhccCCEEEECCC
Confidence 68888888888897 89999999987654421 1121 0 0011122 45678999999986
Q ss_pred CC
Q 015610 79 EN 80 (403)
Q Consensus 79 e~ 80 (403)
.+
T Consensus 252 s~ 253 (423)
T PRK00045 252 AP 253 (423)
T ss_pred CC
Confidence 54
No 256
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=83.25 E-value=4.2 Score=42.23 Aligned_cols=29 Identities=14% Similarity=-0.147 Sum_probs=22.1
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 2 GSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
|...++.+...|.+|+++|+++++++.+.
T Consensus 177 GL~Ai~~Ak~lGA~V~a~D~~~~rle~ae 205 (509)
T PRK09424 177 GLAAIGAAGSLGAIVRAFDTRPEVAEQVE 205 (509)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 34444455566999999999999998875
No 257
>PTZ00325 malate dehydrogenase; Provisional
Probab=83.20 E-value=2.9 Score=40.80 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=17.3
Q ss_pred ChHHHHHHHHHCC--CceEEEeC
Q 015610 1 MGSGIATALILSN--YPVILKEV 21 (403)
Q Consensus 1 MG~~iA~~la~~G--~~V~l~d~ 21 (403)
.|+.+|..++..| .+++|+|+
T Consensus 20 VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 20 IGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred HHHHHHHHHhcCCCCCEEEEEec
Confidence 3788898888666 48999999
No 258
>PRK07062 short chain dehydrogenase; Provisional
Probab=82.41 E-value=2 Score=40.11 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGR 32 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~ 32 (403)
+|..+|..|+..|++|++.+++++.+++..+.
T Consensus 20 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 51 (265)
T PRK07062 20 IGLATVELLLEAGASVAICGRDEERLASAEAR 51 (265)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Confidence 58899999999999999999999887765433
No 259
>PRK06194 hypothetical protein; Provisional
Probab=82.32 E-value=4.9 Score=37.90 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGR 32 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~ 32 (403)
+|..+|..|++.|++|++.|++.+.+++..+.
T Consensus 18 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 49 (287)
T PRK06194 18 FGLAFARIGAALGMKLVLADVQQDALDRAVAE 49 (287)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH
Confidence 48899999999999999999998877665443
No 260
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=82.26 E-value=6.2 Score=35.41 Aligned_cols=80 Identities=14% Similarity=0.183 Sum_probs=51.2
Q ss_pred HHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccc-cccccc--c-CCCCeEEEecCC-
Q 015610 5 IATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYES--F-KDVDMVIEAIIE- 79 (403)
Q Consensus 5 iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--~-~~aDlVieav~e- 79 (403)
.+..|++.|++|+.+|.|++.++.+++.+.. .+ ++ +++. ..+... + ...|+|+.+..-
T Consensus 44 ~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~-------~~-~~---------~v~~~~~d~~~~~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 44 NSLYLAANGFDVTAWDKNPMSIANLERIKAA-------EN-LD---------NLHTAVVDLNNLTFDGEYDFILSTVVLM 106 (197)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH-------cC-CC---------cceEEecChhhCCcCCCcCEEEEecchh
Confidence 5677888999999999999999887654322 12 11 1111 112211 1 347999876431
Q ss_pred --ChHHHHHHHHHHHhhCCCCcEE
Q 015610 80 --NVSLKQQIFADLEKYCPPHCIL 101 (403)
Q Consensus 80 --~~~~K~~~~~~l~~~~~~~~il 101 (403)
+.+....+++++.+.++|+..+
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEE
Confidence 3334678889999999999863
No 261
>PRK05086 malate dehydrogenase; Provisional
Probab=82.24 E-value=2.2 Score=41.41 Aligned_cols=91 Identities=14% Similarity=0.165 Sum_probs=49.4
Q ss_pred ChHHHHHHHHH---CCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccc--ccc-ccccCCCCeEE
Q 015610 1 MGSGIATALIL---SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG--VLD-YESFKDVDMVI 74 (403)
Q Consensus 1 MG~~iA~~la~---~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~-~~~~~~aDlVi 74 (403)
+|..+|..++. .+++++++|+++.+-..++ | ..... ....++. .++ ++++++||+||
T Consensus 12 VG~aia~~l~~~~~~~~el~L~d~~~~~~g~al-------D--l~~~~--------~~~~i~~~~~~d~~~~l~~~DiVI 74 (312)
T PRK05086 12 IGQALALLLKTQLPAGSELSLYDIAPVTPGVAV-------D--LSHIP--------TAVKIKGFSGEDPTPALEGADVVL 74 (312)
T ss_pred HHHHHHHHHHcCCCCccEEEEEecCCCCcceeh-------h--hhcCC--------CCceEEEeCCCCHHHHcCCCCEEE
Confidence 36777776644 2569999999864211111 0 01100 0012322 345 48899999999
Q ss_pred EecCCCh--------------HHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 015610 75 EAIIENV--------------SLKQQIFADLEKYCPPHCILASNTSTIDLN 111 (403)
Q Consensus 75 eav~e~~--------------~~K~~~~~~l~~~~~~~~ilasntStl~~~ 111 (403)
-|.-... .+-+.+...+.++ .+++++.. . |-|++
T Consensus 75 itaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~iviv-v-sNP~D 122 (312)
T PRK05086 75 ISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGI-I-TNPVN 122 (312)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEE-c-cCchH
Confidence 9876522 1333444556665 56777764 2 34664
No 262
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.22 E-value=1.8 Score=41.42 Aligned_cols=36 Identities=11% Similarity=0.249 Sum_probs=26.6
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
+.++.||+||-|++-. .++.. +.+++++++.+.+.+
T Consensus 197 ~~~~~ADIVV~avG~~-----~~i~~--~~ik~gavVIDVGin 232 (285)
T PRK14189 197 AHTRQADIVVAAVGKR-----NVLTA--DMVKPGATVIDVGMN 232 (285)
T ss_pred HHhhhCCEEEEcCCCc-----CccCH--HHcCCCCEEEEcccc
Confidence 4578999999999944 33432 568999999876544
No 263
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=81.57 E-value=2.4 Score=34.77 Aligned_cols=79 Identities=18% Similarity=0.109 Sum_probs=46.9
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccc-----cc-ccc--CCCCeE
Q 015610 2 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-----DY-ESF--KDVDMV 73 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-----~~-~~~--~~aDlV 73 (403)
|...++.+...|.+|++.|.++++++.++ +.|.- . . +.... .+ +.. .++|+|
T Consensus 3 G~~a~q~ak~~G~~vi~~~~~~~k~~~~~-----------~~Ga~-~-----~---~~~~~~~~~~~i~~~~~~~~~d~v 62 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDRSEEKLELAK-----------ELGAD-H-----V---IDYSDDDFVEQIRELTGGRGVDVV 62 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEESSHHHHHHHH-----------HTTES-E-----E---EETTTSSHHHHHHHHTTTSSEEEE
T ss_pred HHHHHHHHHHcCCEEEEEECCHHHHHHHH-----------hhccc-c-----c---ccccccccccccccccccccceEE
Confidence 44555555567999999999999988774 44421 0 0 00000 01 112 469999
Q ss_pred EEecCCChHHHHHHHHHHHhhCCCCcEEEecC
Q 015610 74 IEAIIENVSLKQQIFADLEKYCPPHCILASNT 105 (403)
Q Consensus 74 ieav~e~~~~K~~~~~~l~~~~~~~~ilasnt 105 (403)
|||+... ..+....+.++++..++.-.
T Consensus 63 id~~g~~-----~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 63 IDCVGSG-----DTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp EESSSSH-----HHHHHHHHHEEEEEEEEEES
T ss_pred EEecCcH-----HHHHHHHHHhccCCEEEEEE
Confidence 9999843 34555555666666655433
No 264
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.21 E-value=3.7 Score=39.18 Aligned_cols=36 Identities=8% Similarity=0.174 Sum_probs=26.3
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
+.+++||+||-|++-..-++.++ ++|++++.+.++.
T Consensus 191 ~~~~~ADIvI~Avgk~~lv~~~~-------vk~GavVIDVgi~ 226 (279)
T PRK14178 191 AELRQADILVSAAGKAGFITPDM-------VKPGATVIDVGIN 226 (279)
T ss_pred HHHhhCCEEEECCCcccccCHHH-------cCCCcEEEEeecc
Confidence 46789999999997443334333 5999999986654
No 265
>PRK07340 ornithine cyclodeaminase; Validated
Probab=80.92 E-value=4.5 Score=39.12 Aligned_cols=81 Identities=15% Similarity=0.085 Sum_probs=51.1
Q ss_pred ChHHHHHHHHH-CC-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEec
Q 015610 1 MGSGIATALIL-SN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAI 77 (403)
Q Consensus 1 MG~~iA~~la~-~G-~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav 77 (403)
||...+..++. .+ .+|.+|++++++.++..+++++ .+ + .+. ..+. +++.+||+||.|.
T Consensus 136 qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~-~----------~~~-~~~~~~av~~aDiVitaT 196 (304)
T PRK07340 136 QARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LG-P----------TAE-PLDGEAIPEAVDLVVTAT 196 (304)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cC-C----------eeE-ECCHHHHhhcCCEEEEcc
Confidence 35566666653 45 4799999999987766543321 11 1 011 2344 5789999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 78 IENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 78 ~e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
|-.. .+|.. .++|++.|..-.|.
T Consensus 197 ~s~~----Pl~~~---~~~~g~hi~~iGs~ 219 (304)
T PRK07340 197 TSRT----PVYPE---AARAGRLVVAVGAF 219 (304)
T ss_pred CCCC----ceeCc---cCCCCCEEEecCCC
Confidence 9764 34432 36888887765544
No 266
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=80.69 E-value=5.8 Score=35.75 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=52.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcccc--cc----c-cccCCCCeE
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV--LD----Y-ESFKDVDMV 73 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~----~-~~~~~aDlV 73 (403)
.|.++|..|.+.|..|+++|.+.-.+-. ..+.+ +-+.+ .+ + +.++.||+|
T Consensus 74 VGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~----------~hs~t~~~~~~~~l~~~~~~ADIV 130 (197)
T cd01079 74 VGRPLAALLANDGARVYSVDINGIQVFT-------------RGESI----------RHEKHHVTDEEAMTLDCLSQSDVV 130 (197)
T ss_pred chHHHHHHHHHCCCEEEEEecCcccccc-------------ccccc----------ccccccccchhhHHHHHhhhCCEE
Confidence 3899999999999999999876533210 00110 00011 11 2 557999999
Q ss_pred EEecCCChH-HHHHHHHHHHhhCCCCcEEEecCCCCC
Q 015610 74 IEAIIENVS-LKQQIFADLEKYCPPHCILASNTSTID 109 (403)
Q Consensus 74 ieav~e~~~-~K~~~~~~l~~~~~~~~ilasntStl~ 109 (403)
|-|++-..- ++.+. +++++++.+..+...
T Consensus 131 IsAvG~~~~~i~~d~-------ik~GavVIDVGi~~d 160 (197)
T cd01079 131 ITGVPSPNYKVPTEL-------LKDGAICINFASIKN 160 (197)
T ss_pred EEccCCCCCccCHHH-------cCCCcEEEEcCCCcC
Confidence 999997764 55544 789999998776543
No 267
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=80.64 E-value=8.8 Score=34.35 Aligned_cols=79 Identities=14% Similarity=0.202 Sum_probs=48.8
Q ss_pred HHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcccccccc--cc-CCCCeEEEecCC--
Q 015610 5 IATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE--SF-KDVDMVIEAIIE-- 79 (403)
Q Consensus 5 iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~~-~~aDlVieav~e-- 79 (403)
++..++..|++|+.+|.+++.++.+.+++.. .+ ++ . +.. ..+.. .+ ...|+|+.+.+=
T Consensus 44 ~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~-------~~-~~---v-----~~~-~~d~~~~~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 44 NSLYLSLAGYDVRAWDHNPASIASVLDMKAR-------EN-LP---L-----RTD-AYDINAAALNEDYDFIFSTVVFMF 106 (195)
T ss_pred HHHHHHHCCCeEEEEECCHHHHHHHHHHHHH-------hC-CC---c-----eeE-eccchhccccCCCCEEEEeccccc
Confidence 5667788899999999999998887643321 12 11 0 000 01110 11 357998865331
Q ss_pred -ChHHHHHHHHHHHhhCCCCcE
Q 015610 80 -NVSLKQQIFADLEKYCPPHCI 100 (403)
Q Consensus 80 -~~~~K~~~~~~l~~~~~~~~i 100 (403)
+.+-...+++++.+.++|+..
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcE
Confidence 223456788889889999986
No 268
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=80.44 E-value=2.4 Score=40.59 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=40.5
Q ss_pred hHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHhhcCccccccccccCCCCeEEEecCC
Q 015610 2 GSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 79 (403)
Q Consensus 2 G~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e 79 (403)
+++++..|+..|. ++++++|+.++.++..+.+.. .+. +. .....+.+...++|+||.|+|-
T Consensus 138 arAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~-------~~~~~~----------~~~~~~~~~~~~~dliINaTp~ 200 (283)
T COG0169 138 ARAVAFALAEAGAKRITVVNRTRERAEELADLFGE-------LGAAVE----------AAALADLEGLEEADLLINATPV 200 (283)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cccccc----------cccccccccccccCEEEECCCC
Confidence 5788899999995 899999999997766433221 110 00 0011222333368999999987
Q ss_pred Ch
Q 015610 80 NV 81 (403)
Q Consensus 80 ~~ 81 (403)
.+
T Consensus 201 Gm 202 (283)
T COG0169 201 GM 202 (283)
T ss_pred CC
Confidence 74
No 269
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.28 E-value=4.8 Score=38.56 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=40.1
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCCh
Q 015610 2 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENV 81 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~~ 81 (403)
|+++|..|+..|..|+++++....+. +.++++|+||-|++-+.
T Consensus 172 Gkpia~~L~~~gatVtv~~~~t~~L~-------------------------------------~~~~~aDIvI~AtG~~~ 214 (283)
T PRK14192 172 GKPMAMMLLNANATVTICHSRTQNLP-------------------------------------ELVKQADIIVGAVGKPE 214 (283)
T ss_pred HHHHHHHHHhCCCEEEEEeCCchhHH-------------------------------------HHhccCCEEEEccCCCC
Confidence 67788888888888888876322111 22478999999996332
Q ss_pred HHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 82 SLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 82 ~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
-+.. +.+++++++.+...+
T Consensus 215 ~v~~-------~~lk~gavViDvg~n 233 (283)
T PRK14192 215 LIKK-------DWIKQGAVVVDAGFH 233 (283)
T ss_pred cCCH-------HHcCCCCEEEEEEEe
Confidence 2222 347888888875533
No 270
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=80.10 E-value=5.1 Score=41.60 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=51.4
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHH---HHHHHHcC--------CCCHHHHHHhhcCccccccccccCCC
Q 015610 2 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRAN---LQSRVKKG--------KMTQEKFEKTISLLTGVLDYESFKDV 70 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~---~~~~~~~g--------~~~~~~~~~~~~~i~~~~~~~~~~~a 70 (403)
|...+..+...|..|+++|+++++++.+.+ +-.. ++. .+.| .++.+..++.... ..+.++++
T Consensus 176 Gl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lGa~~v~v~~-~e~g~~~~gYa~~~s~~~~~~~~~~-----~~e~~~~~ 248 (511)
T TIGR00561 176 GLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MGAEFLELDF-KEEGGSGDGYAKVMSEEFIAAEMEL-----FAAQAKEV 248 (511)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCeEEeccc-cccccccccceeecCHHHHHHHHHH-----HHHHhCCC
Confidence 445555566679999999999998777642 1000 000 0000 0111111111000 11446889
Q ss_pred CeEEEec--CCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 015610 71 DMVIEAI--IENVSLKQQIFADLEKYCPPHCILASNTS 106 (403)
Q Consensus 71 DlVieav--~e~~~~K~~~~~~l~~~~~~~~ilasntS 106 (403)
|+||+|+ |.... .+-+.++..+.++++++|++-++
T Consensus 249 DIVI~TalipG~~a-P~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 249 DIIITTALIPGKPA-PKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred CEEEECcccCCCCC-CeeehHHHHhhCCCCCEEEEeee
Confidence 9999998 22111 12244556677899999887543
No 271
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=79.23 E-value=18 Score=32.69 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=65.3
Q ss_pred hHHHHHHHHHCCCceEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 2 GSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~-~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
|...+..|..+|++|++++.+.. .+.. +.+.+.+.- ..-.-..+++.++|+||-|...+
T Consensus 22 a~~ka~~Ll~~ga~V~VIs~~~~~~l~~-----------l~~~~~i~~---------~~~~~~~~~l~~adlViaaT~d~ 81 (202)
T PRK06718 22 AGRRAITLLKYGAHIVVISPELTENLVK-----------LVEEGKIRW---------KQKEFEPSDIVDAFLVIAATNDP 81 (202)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCCHHHHH-----------HHhCCCEEE---------EecCCChhhcCCceEEEEcCCCH
Confidence 55667778889999999986532 1211 123333210 00011125688999999876544
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCC--CCCCeEEEecCCCCCHHHHHHHHHHH
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTSPQVIVDLLDIG 158 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~--~~~~lvevv~~~~t~~e~~~~~~~l~ 158 (403)
++-+.+.. .|..+. +. |... .|+. ..|+.|. ...++..-|.+...+|.....++.-+
T Consensus 82 -elN~~i~~----~a~~~~-lv-n~~d-----------~~~~---~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~i 140 (202)
T PRK06718 82 -RVNEQVKE----DLPENA-LF-NVIT-----------DAES---GNVVFPSALHRGKLTISVSTDGASPKLAKKIRDEL 140 (202)
T ss_pred -HHHHHHHH----HHHhCC-cE-EECC-----------CCcc---CeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHH
Confidence 45555543 233343 33 2222 1111 2444454 35677777777778888887777766
Q ss_pred HH
Q 015610 159 KK 160 (403)
Q Consensus 159 ~~ 160 (403)
+.
T Consensus 141 e~ 142 (202)
T PRK06718 141 EA 142 (202)
T ss_pred HH
Confidence 55
No 272
>PLN02780 ketoreductase/ oxidoreductase
Probab=79.17 E-value=3 Score=40.59 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=28.2
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRV 33 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i 33 (403)
+|..+|..|++.|++|++.+++++.++...+.+
T Consensus 65 IG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l 97 (320)
T PLN02780 65 IGKGFAFQLARKGLNLVLVARNPDKLKDVSDSI 97 (320)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Confidence 588999999999999999999999887665444
No 273
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=79.02 E-value=3.4 Score=40.46 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=44.7
Q ss_pred CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCCChHHHHHHHHHH
Q 015610 13 NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADL 91 (403)
Q Consensus 13 G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e~~~~K~~~~~~l 91 (403)
.-+|.+|++++++.++...++++. +.. .+....+. +++.+||+|+.|.|.+. .++.
T Consensus 155 ~~~I~i~~r~~~~~e~~a~~l~~~-------~~~----------~v~a~~s~~~av~~aDiIvt~T~s~~----Pil~-- 211 (330)
T COG2423 155 IREIRVYSRDPEAAEAFAARLRKR-------GGE----------AVGAADSAEEAVEGADIVVTATPSTE----PVLK-- 211 (330)
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhh-------cCc----------cceeccCHHHHhhcCCEEEEecCCCC----Ceec--
Confidence 348999999999988776444332 211 12345555 78899999999998764 2221
Q ss_pred HhhCCCCcEEEecC
Q 015610 92 EKYCPPHCILASNT 105 (403)
Q Consensus 92 ~~~~~~~~ilasnt 105 (403)
.+.++|++-|..-.
T Consensus 212 ~~~l~~G~hI~aiG 225 (330)
T COG2423 212 AEWLKPGTHINAIG 225 (330)
T ss_pred HhhcCCCcEEEecC
Confidence 23355777765443
No 274
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=78.98 E-value=7 Score=37.78 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=44.8
Q ss_pred ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCCChHHHHHHHHHHHh
Q 015610 15 PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEK 93 (403)
Q Consensus 15 ~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e~~~~K~~~~~~l~~ 93 (403)
+|.+|++++++.++..+++++.+ |. .++..++. +++.+||+|+.|.+... .+|. .+
T Consensus 144 ~v~v~~r~~~~a~~f~~~~~~~~------~~-----------~v~~~~~~~eav~~aDIV~taT~s~~----P~~~--~~ 200 (301)
T PRK06407 144 RIRVYSRNFDHARAFAERFSKEF------GV-----------DIRPVDNAEAALRDADTITSITNSDT----PIFN--RK 200 (301)
T ss_pred EEEEECCCHHHHHHHHHHHHHhc------CC-----------cEEEeCCHHHHHhcCCEEEEecCCCC----cEec--HH
Confidence 89999999999887765444211 21 13345555 77899999999988653 3331 12
Q ss_pred hCCCCcEEEecCCC
Q 015610 94 YCPPHCILASNTST 107 (403)
Q Consensus 94 ~~~~~~ilasntSt 107 (403)
.++|++-|..-.|.
T Consensus 201 ~l~pg~hV~aiGs~ 214 (301)
T PRK06407 201 YLGDEYHVNLAGSN 214 (301)
T ss_pred HcCCCceEEecCCC
Confidence 45677766654443
No 275
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=78.55 E-value=23 Score=34.66 Aligned_cols=131 Identities=16% Similarity=0.084 Sum_probs=79.3
Q ss_pred ChHHHHHHHHHCCCceEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCC
Q 015610 1 MGSGIATALILSNYPVILKE-VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 79 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d-~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e 79 (403)
+|..||..|...| .++.|. +++..-+... +.+.. ..+..+-++.+|+|+-|.|-
T Consensus 173 IG~~ia~rL~~Fg-~~i~y~~r~~~~~~~~~-----------~~~~~-------------~~d~~~~~~~sD~ivv~~pL 227 (336)
T KOG0069|consen 173 IGKAIAKRLKPFG-CVILYHSRTQLPPEEAY-----------EYYAE-------------FVDIEELLANSDVIVVNCPL 227 (336)
T ss_pred HHHHHHHhhhhcc-ceeeeecccCCchhhHH-----------Hhccc-------------ccCHHHHHhhCCEEEEecCC
Confidence 4788999988888 555554 4444333321 11110 12223567899999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEecCCC--CCHHHHHhhcC-CCCcEEEEecCC--CCC-----CCCeEEEecC-CCCCH
Q 015610 80 NVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY-SKDRIVGAHFFS--PAH-----VMPLLEIVRT-NQTSP 148 (403)
Q Consensus 80 ~~~~K~~~~~~l~~~~~~~~ilasntSt--l~~~~la~~~~-~~~r~ig~hf~~--P~~-----~~~lvevv~~-~~t~~ 148 (403)
+.+...-+=+++.+.++++++|....=+ +.-.++.+.+. .+-.=.|..-|. |+- .+.-+-+.|+ ..++.
T Consensus 228 t~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHigs~t~ 307 (336)
T KOG0069|consen 228 TKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHIGSATL 307 (336)
T ss_pred CHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEecccccCcH
Confidence 9998888888999999999999854433 33446776663 122234555553 311 2344556665 23455
Q ss_pred HHHHHHHH
Q 015610 149 QVIVDLLD 156 (403)
Q Consensus 149 e~~~~~~~ 156 (403)
++.+....
T Consensus 308 ~t~~~m~~ 315 (336)
T KOG0069|consen 308 ETREKMAE 315 (336)
T ss_pred HHHHHHHH
Confidence 55554443
No 276
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=78.07 E-value=5.6 Score=35.97 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHCCC-ceEEEeCCH
Q 015610 1 MGSGIATALILSNY-PVILKEVNE 23 (403)
Q Consensus 1 MG~~iA~~la~~G~-~V~l~d~~~ 23 (403)
+|+.+|.+|++.|. +++++|.+.
T Consensus 32 lGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 32 LGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred HHHHHHHHHHHcCCCeEEEecCCE
Confidence 47889999999998 999999873
No 277
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=78.05 E-value=3.3 Score=38.48 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=28.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRV 33 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i 33 (403)
+|..+|..|+..|++|++.+++++.+++..+.+
T Consensus 12 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l 44 (259)
T PRK08340 12 IGFNVARELLKKGARVVISSRNEENLEKALKEL 44 (259)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 588999999999999999999998877665444
No 278
>PRK06196 oxidoreductase; Provisional
Probab=77.97 E-value=3.6 Score=39.63 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=27.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRV 33 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i 33 (403)
+|..+|..|+..|++|++.+++++.++...+.+
T Consensus 38 IG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l 70 (315)
T PRK06196 38 LGLETTRALAQAGAHVIVPARRPDVAREALAGI 70 (315)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence 588999999999999999999998876654433
No 279
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.93 E-value=2.6 Score=40.27 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA 35 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~ 35 (403)
+|+.||+.||+.|..+.+||++.+...+..+.+++
T Consensus 50 lGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~ 84 (300)
T KOG1201|consen 50 LGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRK 84 (300)
T ss_pred HHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHh
Confidence 58999999999999999999999998877665544
No 280
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=77.84 E-value=2 Score=40.87 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=43.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
.|++||+.|.++++.|++.......+. +-++.||+||-|+--.
T Consensus 168 VGkPla~lL~~~naTVtvcHs~T~~l~-------------------------------------~~~k~ADIvv~AvG~p 210 (283)
T COG0190 168 VGKPLALLLLNANATVTVCHSRTKDLA-------------------------------------SITKNADIVVVAVGKP 210 (283)
T ss_pred CcHHHHHHHHhCCCEEEEEcCCCCCHH-------------------------------------HHhhhCCEEEEecCCc
Confidence 377777777777777777664332211 2357899999998765
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
--+| .+.++|++++.+-+.+
T Consensus 211 ~~i~-------~d~vk~gavVIDVGin 230 (283)
T COG0190 211 HFIK-------ADMVKPGAVVIDVGIN 230 (283)
T ss_pred cccc-------cccccCCCEEEecCCc
Confidence 5444 3457899999987655
No 281
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=77.50 E-value=17 Score=33.90 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=55.5
Q ss_pred HHCCCceEEEeCCHHHHHHHHHHHHHHHHHHH----HcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCChHHHH
Q 015610 10 ILSNYPVILKEVNEKFLEAGIGRVRANLQSRV----KKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQ 85 (403)
Q Consensus 10 a~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~----~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~~~~K~ 85 (403)
...|++|.++--+++.++++.+++++.+ ... ..|-+++++.+...++|. -.++|+|+-+..-. ||
T Consensus 102 ~~~~~~v~llG~~~~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~e~~~i~~~I~-------~s~~dil~VglG~P---kQ 170 (243)
T PRK03692 102 GKEGTPVFLVGGKPEVLAQTEAKLRTQW-NVNIVGSQDGYFTPEQRQALFERIH-------ASGAKIVTVAMGSP---KQ 170 (243)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHHHh-CCEEEEEeCCCCCHHHHHHHHHHHH-------hcCCCEEEEECCCc---HH
Confidence 4568999999999999999998887766 321 246666655555545442 25688888888776 67
Q ss_pred HHHH-HHHhhCCCCcEEE
Q 015610 86 QIFA-DLEKYCPPHCILA 102 (403)
Q Consensus 86 ~~~~-~l~~~~~~~~ila 102 (403)
+.|- +..+.++...+++
T Consensus 171 E~~~~~~~~~~~~~v~~g 188 (243)
T PRK03692 171 EIFMRDCRLVYPDALYMG 188 (243)
T ss_pred HHHHHHHHHhCCCCEEEE
Confidence 7774 4555555444443
No 282
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=77.43 E-value=6.6 Score=38.64 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHCCC-ceEEEeCCH
Q 015610 1 MGSGIATALILSNY-PVILKEVNE 23 (403)
Q Consensus 1 MG~~iA~~la~~G~-~V~l~d~~~ 23 (403)
.|+.+|..|+++|+ +++++|.+.
T Consensus 35 lGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 35 LGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCc
Confidence 37899999999998 999999986
No 283
>PRK12829 short chain dehydrogenase; Provisional
Probab=77.29 E-value=8.3 Score=35.60 Aligned_cols=29 Identities=31% Similarity=0.327 Sum_probs=25.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..+|..|+..|++|++.+++++.++..
T Consensus 23 iG~~~a~~L~~~g~~V~~~~r~~~~~~~~ 51 (264)
T PRK12829 23 IGRAIAEAFAEAGARVHVCDVSEAALAAT 51 (264)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 48899999999999999999998776544
No 284
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=77.22 E-value=3.9 Score=36.78 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=48.9
Q ss_pred HHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccc-ccccc--cc-CCCCeEEEec---
Q 015610 5 IATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYE--SF-KDVDMVIEAI--- 77 (403)
Q Consensus 5 iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~--~~-~~aDlVieav--- 77 (403)
-|..||+.|++|+.+|.|+.+++++.+.. ++..++ |++ ..|++ .+ ..-|+|+-.+
T Consensus 44 NalyLA~~G~~VtAvD~s~~al~~l~~~a--------~~~~l~----------i~~~~~Dl~~~~~~~~yD~I~st~v~~ 105 (192)
T PF03848_consen 44 NALYLASQGFDVTAVDISPVALEKLQRLA--------EEEGLD----------IRTRVADLNDFDFPEEYDFIVSTVVFM 105 (192)
T ss_dssp HHHHHHHTT-EEEEEESSHHHHHHHHHHH--------HHTT-T----------EEEEE-BGCCBS-TTTEEEEEEESSGG
T ss_pred HHHHHHHCCCeEEEEECCHHHHHHHHHHH--------hhcCce----------eEEEEecchhccccCCcCEEEEEEEec
Confidence 47789999999999999999988764321 111111 111 12221 12 3458877532
Q ss_pred CCChHHHHHHHHHHHhhCCCCcEEEe
Q 015610 78 IENVSLKQQIFADLEKYCPPHCILAS 103 (403)
Q Consensus 78 ~e~~~~K~~~~~~l~~~~~~~~ilas 103 (403)
.=+.+....++..+.+..+|+.++.-
T Consensus 106 fL~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 106 FLQRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp GS-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHhhcCCcEEEEE
Confidence 23455667788888888888877553
No 285
>PRK08339 short chain dehydrogenase; Provisional
Probab=77.01 E-value=3.9 Score=38.32 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=27.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGR 32 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~ 32 (403)
+|..+|..|++.|++|++.+++++.++...+.
T Consensus 20 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 51 (263)
T PRK08339 20 IGFGVARVLARAGADVILLSRNEENLKKAREK 51 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 58899999999999999999999887665443
No 286
>PRK07589 ornithine cyclodeaminase; Validated
Probab=76.98 E-value=7.9 Score=38.24 Aligned_cols=70 Identities=9% Similarity=0.133 Sum_probs=45.1
Q ss_pred CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCCCh---HHHHHHH
Q 015610 13 NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENV---SLKQQIF 88 (403)
Q Consensus 13 G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e~~---~~K~~~~ 88 (403)
=.+|++|++++++.++..+++++ .+ + .+...++. +++++||+|+.|.+... -++.
T Consensus 154 i~~V~v~~r~~~~a~~~~~~~~~-------~~-~----------~v~~~~~~~~av~~ADIIvtaT~S~~~~Pvl~~--- 212 (346)
T PRK07589 154 IEEIRLYDIDPAATAKLARNLAG-------PG-L----------RIVACRSVAEAVEGADIITTVTADKTNATILTD--- 212 (346)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHh-------cC-C----------cEEEeCCHHHHHhcCCEEEEecCCCCCCceecH---
Confidence 34999999999998777554432 12 1 13344555 67899999999997431 1222
Q ss_pred HHHHhhCCCCcEEEecCCC
Q 015610 89 ADLEKYCPPHCILASNTST 107 (403)
Q Consensus 89 ~~l~~~~~~~~ilasntSt 107 (403)
+.++|++-|..-.|.
T Consensus 213 ----~~lkpG~hV~aIGs~ 227 (346)
T PRK07589 213 ----DMVEPGMHINAVGGD 227 (346)
T ss_pred ----HHcCCCcEEEecCCC
Confidence 245788877655544
No 287
>PRK08291 ectoine utilization protein EutC; Validated
Probab=76.73 E-value=4.5 Score=39.62 Aligned_cols=62 Identities=23% Similarity=0.188 Sum_probs=38.2
Q ss_pred hHHHHHHHHH-CC-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecC
Q 015610 2 GSGIATALIL-SN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 2 G~~iA~~la~-~G-~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
|...+..++. .+ .+|++|++++++.++..+++++.+ | + .+....++ +++.+||+||.|.|
T Consensus 144 a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~al~~aDiVi~aT~ 206 (330)
T PRK08291 144 ARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEAVAGADIIVTTTP 206 (330)
T ss_pred HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHHHccCCEEEEeeC
Confidence 3444555553 44 589999999998877654443211 1 1 12234454 56788899988887
Q ss_pred CC
Q 015610 79 EN 80 (403)
Q Consensus 79 e~ 80 (403)
-.
T Consensus 207 s~ 208 (330)
T PRK08291 207 SE 208 (330)
T ss_pred CC
Confidence 64
No 288
>PRK08862 short chain dehydrogenase; Provisional
Probab=75.69 E-value=4.3 Score=37.26 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRV 33 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i 33 (403)
+|.++|..|++.|++|++.+++++.+++..+.+
T Consensus 17 IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i 49 (227)
T PRK08862 17 LGRTISCHFARLGATLILCDQDQSALKDTYEQC 49 (227)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence 588999999999999999999998877765433
No 289
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=75.69 E-value=13 Score=34.71 Aligned_cols=83 Identities=18% Similarity=0.149 Sum_probs=51.1
Q ss_pred HHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcccc-ccc---c--ccCCCCeEEEec
Q 015610 4 GIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDY---E--SFKDVDMVIEAI 77 (403)
Q Consensus 4 ~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~---~--~~~~aDlVieav 77 (403)
.++..++..|++|+++|.+++.++.+.+++.. .|.. .++++. .+. . .-...|+|+-.-
T Consensus 57 ~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~-------~g~~---------~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 57 QTAIKLAELGHQVILCDLSAEMIQRAKQAAEA-------KGVS---------DNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred HHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-------cCCc---------cceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 45678888999999999999999988654432 2211 011111 111 1 113568887542
Q ss_pred C-CChHHHHHHHHHHHhhCCCCcEEE
Q 015610 78 I-ENVSLKQQIFADLEKYCPPHCILA 102 (403)
Q Consensus 78 ~-e~~~~K~~~~~~l~~~~~~~~ila 102 (403)
. +-..-...+++++.+.++|+.+++
T Consensus 121 vl~~~~~~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred HHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence 2 111113477889999999999886
No 290
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=75.29 E-value=17 Score=34.55 Aligned_cols=91 Identities=22% Similarity=0.311 Sum_probs=54.5
Q ss_pred hHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCC
Q 015610 2 GSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 79 (403)
Q Consensus 2 G~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e 79 (403)
|...|..+...|. ++.++|.++++++-..=. .+.|. .=....++....|+...+++++||-..--
T Consensus 32 GmAca~siL~k~Ladel~lvDv~~dklkGE~MD--------LqH~s-----~f~~~~~V~~~~Dy~~sa~S~lvIiTAGa 98 (332)
T KOG1495|consen 32 GMACAISILLKGLADELVLVDVNEDKLKGEMMD--------LQHGS-----AFLSTPNVVASKDYSVSANSKLVIITAGA 98 (332)
T ss_pred HHHHHHHHHHhhhhhceEEEecCcchhhhhhhh--------hcccc-----ccccCCceEecCcccccCCCcEEEEecCC
Confidence 5667777777887 999999999986543211 11111 00112356566688889999999987654
Q ss_pred ChH---HH-------HHHHHHHHh---hCCCCcEEEecC
Q 015610 80 NVS---LK-------QQIFADLEK---YCPPHCILASNT 105 (403)
Q Consensus 80 ~~~---~K-------~~~~~~l~~---~~~~~~ilasnt 105 (403)
... .. -++|+.+-+ ..+|||++.-.|
T Consensus 99 rq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvS 137 (332)
T KOG1495|consen 99 RQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVS 137 (332)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 322 11 234443222 258888877533
No 291
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=74.99 E-value=40 Score=33.25 Aligned_cols=138 Identities=17% Similarity=0.208 Sum_probs=74.8
Q ss_pred ChHHHHHHHHH-CCCceEE-EeCCHHHHHHHHHHHH------------HHHHHHHHcCCCCHHHHHHhhcCccccccccc
Q 015610 1 MGSGIATALIL-SNYPVIL-KEVNEKFLEAGIGRVR------------ANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 66 (403)
Q Consensus 1 MG~~iA~~la~-~G~~V~l-~d~~~~~l~~~~~~i~------------~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 66 (403)
||++|+.+.++ .|++|.. -|++.....++..+.- .......+.| .+..+.|.+.
T Consensus 28 mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aG------------Ki~vT~D~~~ 95 (438)
T COG4091 28 MGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAG------------KIAVTDDAEL 95 (438)
T ss_pred cchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcC------------cEEEecchhh
Confidence 89999987765 6998765 5788777766654221 1222222333 3434555433
Q ss_pred c---CCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH--HHHhhcCCCCcEEEEecCCCCCCCCeEEEe
Q 015610 67 F---KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFFSPAHVMPLLEIV 141 (403)
Q Consensus 67 ~---~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~--~la~~~~~~~r~ig~hf~~P~~~~~lvevv 141 (403)
+ ...|+|||+.--...--+-. ++......-++..|--. +++ .+.+... +-.|+-| ...
T Consensus 96 i~~~~~IdvIIdATG~p~vGA~~~---l~Ai~h~KHlVMmNVEa-DvtIGp~Lk~~A---d~~Gviy----------S~~ 158 (438)
T COG4091 96 IIANDLIDVIIDATGVPEVGAKIA---LEAILHGKHLVMMNVEA-DVTIGPILKQQA---DAAGVIY----------SGG 158 (438)
T ss_pred hhcCCcceEEEEcCCCcchhhHhH---HHHHhcCCeEEEEEeee-ceeecHHHHHHH---hhcCeEE----------ecc
Confidence 2 45688888765443222222 33334445555555422 221 2222211 1123322 222
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCcEEec
Q 015610 142 RTNQTSPQVIVDLLDIGKKIKKTPIVVG 169 (403)
Q Consensus 142 ~~~~t~~e~~~~~~~l~~~lGk~~v~~~ 169 (403)
.| -.|...-.+.+|.+++|..++.++
T Consensus 159 ~G--DeP~~~mEL~efa~a~G~evv~aG 184 (438)
T COG4091 159 AG--DEPSSCMELYEFASALGFEVVSAG 184 (438)
T ss_pred CC--CCcHHHHHHHHHHHhcCCeEEecc
Confidence 33 467777888899999999999885
No 292
>PRK06823 ornithine cyclodeaminase; Validated
Probab=74.91 E-value=9.3 Score=37.20 Aligned_cols=71 Identities=11% Similarity=0.102 Sum_probs=45.1
Q ss_pred CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCCChHHHHHHHHHH
Q 015610 13 NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADL 91 (403)
Q Consensus 13 G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e~~~~K~~~~~~l 91 (403)
--+|.+||+++++.++..+.++ +.+ + .+...++. +++++||+|+.|.+-.. .+|.
T Consensus 153 i~~v~v~~r~~~~a~~~~~~~~-------~~~-~----------~v~~~~~~~~av~~ADIV~taT~s~~----P~~~-- 208 (315)
T PRK06823 153 CRQLWVWGRSETALEEYRQYAQ-------ALG-F----------AVNTTLDAAEVAHAANLIVTTTPSRE----PLLQ-- 208 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-------hcC-C----------cEEEECCHHHHhcCCCEEEEecCCCC----ceeC--
Confidence 3499999999999877654332 112 1 13335555 67899999999987543 3332
Q ss_pred HhhCCCCcEEEecCCC
Q 015610 92 EKYCPPHCILASNTST 107 (403)
Q Consensus 92 ~~~~~~~~ilasntSt 107 (403)
.+.++|++.|..-.|.
T Consensus 209 ~~~l~~G~hi~~iGs~ 224 (315)
T PRK06823 209 AEDIQPGTHITAVGAD 224 (315)
T ss_pred HHHcCCCcEEEecCCC
Confidence 1346778777655544
No 293
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.90 E-value=7.7 Score=37.13 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=25.6
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
+.++.||+||-|+.-.--++. +.+++++++.+.+.+
T Consensus 197 ~~~~~ADIvI~AvG~p~~i~~-------~~ik~gavVIDvGi~ 232 (284)
T PRK14190 197 ELTKQADILIVAVGKPKLITA-------DMVKEGAVVIDVGVN 232 (284)
T ss_pred HHHHhCCEEEEecCCCCcCCH-------HHcCCCCEEEEeecc
Confidence 346889999999976543333 346899999986544
No 294
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=74.85 E-value=3.3 Score=39.70 Aligned_cols=24 Identities=8% Similarity=0.213 Sum_probs=20.5
Q ss_pred ChHHHHHHHHHCCCc-eEEEeCCHH
Q 015610 1 MGSGIATALILSNYP-VILKEVNEK 24 (403)
Q Consensus 1 MG~~iA~~la~~G~~-V~l~d~~~~ 24 (403)
.|++|+..|+..|.+ |++++|+++
T Consensus 137 agrAia~~La~~G~~~V~I~~R~~~ 161 (289)
T PRK12548 137 AATAIQVQCALDGAKEITIFNIKDD 161 (289)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCch
Confidence 367888889999996 999999974
No 295
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.82 E-value=3.2 Score=38.59 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=21.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCH
Q 015610 1 MGSGIATALILSNYPVILKEVNE 23 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~ 23 (403)
+|.++|..|++.|++|++.+++.
T Consensus 21 IG~a~a~~la~~G~~Vi~~~r~~ 43 (252)
T PRK06079 21 IAWGCAQAIKDQGATVIYTYQND 43 (252)
T ss_pred hHHHHHHHHHHCCCEEEEecCch
Confidence 58999999999999999999873
No 296
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=74.44 E-value=9.1 Score=38.89 Aligned_cols=85 Identities=19% Similarity=0.109 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc--cccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~~aDlVieav~ 78 (403)
+|..++..|...|++|+++|.+++.++...+.. .+.. ......+-...+ ..+.++|.||-+.+
T Consensus 242 ~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~---------~~~~------~i~gd~~~~~~L~~~~~~~a~~vi~~~~ 306 (453)
T PRK09496 242 IGYYLAKLLEKEGYSVKLIERDPERAEELAEEL---------PNTL------VLHGDGTDQELLEEEGIDEADAFIALTN 306 (453)
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC---------CCCe------EEECCCCCHHHHHhcCCccCCEEEECCC
Confidence 378899999999999999999999887664210 0100 000000001112 34678999998888
Q ss_pred CChHHHHHHHH-HHHhhCCCCcEEEe
Q 015610 79 ENVSLKQQIFA-DLEKYCPPHCILAS 103 (403)
Q Consensus 79 e~~~~K~~~~~-~l~~~~~~~~ilas 103 (403)
++. ..++. .+.+...+..|++-
T Consensus 307 ~~~---~n~~~~~~~~~~~~~~ii~~ 329 (453)
T PRK09496 307 DDE---ANILSSLLAKRLGAKKVIAL 329 (453)
T ss_pred CcH---HHHHHHHHHHHhCCCeEEEE
Confidence 762 23332 33444555566654
No 297
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=74.09 E-value=9.7 Score=38.67 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc--cccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~~aDlVieav~ 78 (403)
+|..+|..|...|++|+++|++++.++.+.+. .....-.|-.+ -...+ ..+.++|.||-+++
T Consensus 11 ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~----~~~~~~~gd~~------------~~~~l~~~~~~~a~~vi~~~~ 74 (453)
T PRK09496 11 VGYTLAENLSGENNDVTVIDTDEERLRRLQDR----LDVRTVVGNGS------------SPDVLREAGAEDADLLIAVTD 74 (453)
T ss_pred HHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh----cCEEEEEeCCC------------CHHHHHHcCCCcCCEEEEecC
Confidence 58899999999999999999999987765310 00000011110 01111 23688999999998
Q ss_pred CChHHHHHHHHHHHhhC-CCCcEEEe
Q 015610 79 ENVSLKQQIFADLEKYC-PPHCILAS 103 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~-~~~~ilas 103 (403)
++. .........+.. +...+++.
T Consensus 75 ~~~--~n~~~~~~~r~~~~~~~ii~~ 98 (453)
T PRK09496 75 SDE--TNMVACQIAKSLFGAPTTIAR 98 (453)
T ss_pred ChH--HHHHHHHHHHHhcCCCeEEEE
Confidence 764 222233333333 55566653
No 298
>PLN00016 RNA-binding protein; Provisional
Probab=73.97 E-value=5.9 Score=39.33 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFL 26 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l 26 (403)
+|+.++..|++.||+|++++++++..
T Consensus 68 iG~~lv~~L~~~G~~V~~l~R~~~~~ 93 (378)
T PLN00016 68 IGFYLAKELVKAGHEVTLFTRGKEPS 93 (378)
T ss_pred EhHHHHHHHHHCCCEEEEEecCCcch
Confidence 48899999999999999999987653
No 299
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=73.67 E-value=13 Score=39.84 Aligned_cols=85 Identities=16% Similarity=0.113 Sum_probs=51.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc--cccCCCCeEEEecC
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFKDVDMVIEAII 78 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~~aDlVieav~ 78 (403)
+|..+|..|.+.|++++++|.|++.++.++ +.|.. ......+-.+.+ +.+.++|+||-++.
T Consensus 411 ~G~~va~~L~~~g~~vvvID~d~~~v~~~~-----------~~g~~------v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 411 FGQIVGRLLLSSGVKMTVLDHDPDHIETLR-----------KFGMK------VFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHH-----------hcCCe------EEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 478899999999999999999999988875 22320 000000000012 34679999999997
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEe
Q 015610 79 ENVSLKQQIFADLEKYCPPHCILAS 103 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~~~~~ilas 103 (403)
++..-.. +...+.+..+.-.|++-
T Consensus 474 d~~~n~~-i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 474 DPQTSLQ-LVELVKEHFPHLQIIAR 497 (621)
T ss_pred CHHHHHH-HHHHHHHhCCCCeEEEE
Confidence 7653322 22233344444466654
No 300
>PLN00203 glutamyl-tRNA reductase
Probab=73.35 E-value=3.9 Score=42.64 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=25.3
Q ss_pred ChHHHHHHHHHCCC-ceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNY-PVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~-~V~l~d~~~~~l~~~ 29 (403)
||..++.+|...|. +|++++++++..+..
T Consensus 277 mG~~~a~~L~~~G~~~V~V~nRs~era~~L 306 (519)
T PLN00203 277 MGKLLVKHLVSKGCTKMVVVNRSEERVAAL 306 (519)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCHHHHHHH
Confidence 78899999999997 799999999887665
No 301
>PRK07063 short chain dehydrogenase; Provisional
Probab=73.18 E-value=5.3 Score=37.00 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=27.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRV 33 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i 33 (403)
+|..+|..|+..|++|++.+++++.++...+.+
T Consensus 19 IG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~ 51 (260)
T PRK07063 19 IGAAIARAFAREGAAVALADLDAALAERAAAAI 51 (260)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 588999999999999999999988776654433
No 302
>PRK05854 short chain dehydrogenase; Provisional
Probab=72.62 E-value=5.5 Score=38.44 Aligned_cols=34 Identities=32% Similarity=0.387 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVR 34 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~ 34 (403)
+|..+|..|++.|++|++.+++++..+++.+.+.
T Consensus 26 IG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~ 59 (313)
T PRK05854 26 LGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIR 59 (313)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 5889999999999999999999988877765553
No 303
>PRK07825 short chain dehydrogenase; Provisional
Probab=72.46 E-value=5.3 Score=37.37 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|++.|++|++.+++++.++...
T Consensus 17 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (273)
T PRK07825 17 IGLATARALAALGARVAIGDLDEALAKETA 46 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 488999999999999999999998876654
No 304
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=72.37 E-value=7.7 Score=37.40 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=26.2
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
+.+++||+||-|+.-..-++.+ .+++++++.+...+
T Consensus 206 ~~~~~ADIvv~AvGk~~~i~~~-------~vk~gavVIDvGin 241 (299)
T PLN02516 206 SIVREADIVIAAAGQAMMIKGD-------WIKPGAAVIDVGTN 241 (299)
T ss_pred HHHhhCCEEEEcCCCcCccCHH-------HcCCCCEEEEeecc
Confidence 3468899999999876444443 47899999875533
No 305
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=71.90 E-value=6 Score=36.40 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=50.8
Q ss_pred hHHHHHHHHHCC---C-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcccccccc-ccCCCCeEEEe
Q 015610 2 GSGIATALILSN---Y-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKDVDMVIEA 76 (403)
Q Consensus 2 G~~iA~~la~~G---~-~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aDlViea 76 (403)
|..+... .+.| + .|.+||++.++...+.. ..+. ...++++ .+.+.|+|+||
T Consensus 12 G~~l~e~-v~~~~~~~e~v~v~D~~~ek~~~~~~----------~~~~-------------~~~s~ide~~~~~DlvVEa 67 (255)
T COG1712 12 GKFLLEL-VRDGRVDFELVAVYDRDEEKAKELEA----------SVGR-------------RCVSDIDELIAEVDLVVEA 67 (255)
T ss_pred HHHHHHH-HhcCCcceeEEEEecCCHHHHHHHHh----------hcCC-------------CccccHHHHhhccceeeee
Confidence 4444443 3444 3 67889999998765531 1121 1245664 45899999999
Q ss_pred cCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhh
Q 015610 77 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER 116 (403)
Q Consensus 77 v~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~ 116 (403)
..-+. ++.-..+-|.+ .-|+|+.| ++.++=..+.+.
T Consensus 68 AS~~A-v~e~~~~~L~~--g~d~iV~S-VGALad~~l~er 103 (255)
T COG1712 68 ASPEA-VREYVPKILKA--GIDVIVMS-VGALADEGLRER 103 (255)
T ss_pred CCHHH-HHHHhHHHHhc--CCCEEEEe-chhccChHHHHH
Confidence 87543 44333333443 46899987 556663344444
No 306
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=71.83 E-value=5.5 Score=38.70 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=39.6
Q ss_pred CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCCChHHHHHHHHHHH
Q 015610 14 YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLE 92 (403)
Q Consensus 14 ~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e~~~~K~~~~~~l~ 92 (403)
-+|.+|++++++.++..+++++ .| + .+....+. +++++||+|+.|.+-...- .+|. .
T Consensus 154 ~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~v~~~~~~~~av~~aDii~taT~s~~~~--P~~~--~ 211 (313)
T PF02423_consen 154 KEVRVYSRSPERAEAFAARLRD-------LG-V----------PVVAVDSAEEAVRGADIIVTATPSTTPA--PVFD--A 211 (313)
T ss_dssp SEEEEE-SSHHHHHHHHHHHHC-------CC-T----------CEEEESSHHHHHTTSSEEEE----SSEE--ESB---G
T ss_pred eEEEEEccChhHHHHHHHhhcc-------cc-c----------cceeccchhhhcccCCEEEEccCCCCCC--cccc--H
Confidence 3999999999988776544432 12 1 23445565 7799999999998876410 1111 2
Q ss_pred hhCCCCcEEEecCCC
Q 015610 93 KYCPPHCILASNTST 107 (403)
Q Consensus 93 ~~~~~~~ilasntSt 107 (403)
+.++|++.|..-.|.
T Consensus 212 ~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 212 EWLKPGTHINAIGSY 226 (313)
T ss_dssp GGS-TT-EEEE-S-S
T ss_pred HHcCCCcEEEEecCC
Confidence 356788888765554
No 307
>PRK07478 short chain dehydrogenase; Provisional
Probab=71.83 E-value=6.2 Score=36.44 Aligned_cols=31 Identities=13% Similarity=0.166 Sum_probs=26.5
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIG 31 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~ 31 (403)
+|..+|..|++.|++|++.+++++.++...+
T Consensus 18 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (254)
T PRK07478 18 IGRAAAKLFAREGAKVVVGARRQAELDQLVA 48 (254)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4889999999999999999999887766543
No 308
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=71.69 E-value=6.7 Score=36.03 Aligned_cols=29 Identities=31% Similarity=0.224 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..++..|++.|++|++.+++++.++..
T Consensus 24 iG~~la~~l~~~G~~Vi~~~r~~~~~~~~ 52 (247)
T PRK08945 24 IGREAALTYARHGATVILLGRTEEKLEAV 52 (247)
T ss_pred HHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Confidence 58899999999999999999998876554
No 309
>PRK06720 hypothetical protein; Provisional
Probab=71.43 E-value=7 Score=34.25 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|.++|..|+..|++|+++|++++.++..
T Consensus 28 IG~aia~~l~~~G~~V~l~~r~~~~~~~~ 56 (169)
T PRK06720 28 IGRNTALLLAKQGAKVIVTDIDQESGQAT 56 (169)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 58899999999999999999998765543
No 310
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.86 E-value=8.7 Score=36.74 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=26.7
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
+.++.||+||-|+.-.--++. +.+++++++.+...+
T Consensus 198 ~~~~~ADIvIsAvGk~~~i~~-------~~ik~gavVIDvGin 233 (284)
T PRK14177 198 SIVRQADIIVGAVGKPEFIKA-------DWISEGAVLLDAGYN 233 (284)
T ss_pred HHHhhCCEEEEeCCCcCccCH-------HHcCCCCEEEEecCc
Confidence 346889999999986654443 457899999986654
No 311
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.71 E-value=8.6 Score=37.06 Aligned_cols=36 Identities=8% Similarity=0.139 Sum_probs=26.6
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
+.++.||+||-|+.-.--++. +.+++++++.+.+.+
T Consensus 197 ~~~~~ADIvIsAvGkp~~i~~-------~~ik~gavVIDvGin 232 (297)
T PRK14186 197 SITREADILVAAAGRPNLIGA-------EMVKPGAVVVDVGIH 232 (297)
T ss_pred HHHhhCCEEEEccCCcCccCH-------HHcCCCCEEEEeccc
Confidence 346889999999986654443 357899999986644
No 312
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.64 E-value=9 Score=36.72 Aligned_cols=36 Identities=14% Similarity=0.077 Sum_probs=25.9
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
+.+++||+||-|+.-..-++.+ .+++++++.+..++
T Consensus 203 ~~~~~ADIvv~AvG~p~~i~~~-------~vk~gavVIDvGin 238 (287)
T PRK14176 203 KYTLDADILVVATGVKHLIKAD-------MVKEGAVIFDVGIT 238 (287)
T ss_pred HHHhhCCEEEEccCCccccCHH-------HcCCCcEEEEeccc
Confidence 3468899999987655434333 58899999987654
No 313
>PRK07831 short chain dehydrogenase; Provisional
Probab=70.36 E-value=7 Score=36.30 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=27.7
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRV 33 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i 33 (403)
+|..+|..|+..|++|++.|++++.++...+.+
T Consensus 30 IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~ 62 (262)
T PRK07831 30 IGSATARRALEEGARVVISDIHERRLGETADEL 62 (262)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 488999999999999999999998877665444
No 314
>PRK07890 short chain dehydrogenase; Provisional
Probab=70.34 E-value=7.3 Score=35.89 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIG 31 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~ 31 (403)
+|..+|..|+..|++|++.+++++.++...+
T Consensus 17 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (258)
T PRK07890 17 LGRTLAVRAARAGADVVLAARTAERLDEVAA 47 (258)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 5889999999999999999999987665543
No 315
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.33 E-value=7.4 Score=36.31 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHCCCceEEEeCCH
Q 015610 1 MGSGIATALILSNYPVILKEVNE 23 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~ 23 (403)
+|..+|..|++.|++|++.++++
T Consensus 22 IG~a~a~~la~~G~~v~~~~r~~ 44 (260)
T PRK06603 22 ISWAIAQLAKKHGAELWFTYQSE 44 (260)
T ss_pred hHHHHHHHHHHcCCEEEEEeCch
Confidence 47889999999999999999874
No 316
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=70.24 E-value=1.8 Score=43.23 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHCC-C-ceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSN-Y-PVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G-~-~V~l~d~~~~~l~~~~ 30 (403)
||+.++..|++.+ + +|++.|++.+++++..
T Consensus 9 vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~ 40 (386)
T PF03435_consen 9 VGSAIARLLARRGPFEEVTVADRNPEKAERLA 40 (386)
T ss_dssp HHHHHHHHHHCTTCE-EEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcEEEEECCHHHHHHHH
Confidence 5889999999886 5 8999999999987764
No 317
>PRK07074 short chain dehydrogenase; Provisional
Probab=70.17 E-value=4.3 Score=37.51 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|++.|++|++.+++++.++...
T Consensus 14 iG~~la~~L~~~g~~v~~~~r~~~~~~~~~ 43 (257)
T PRK07074 14 IGQALARRFLAAGDRVLALDIDAAALAAFA 43 (257)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 478899999999999999999988766543
No 318
>PRK05867 short chain dehydrogenase; Provisional
Probab=69.85 E-value=6.6 Score=36.26 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|+..|++|++.+++++.++...
T Consensus 21 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 50 (253)
T PRK05867 21 IGKRVALAYVEAGAQVAIAARHLDALEKLA 50 (253)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 588999999999999999999988766553
No 319
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=69.82 E-value=23 Score=31.37 Aligned_cols=83 Identities=12% Similarity=0.125 Sum_probs=54.6
Q ss_pred HHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHH---cCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCChHHHH
Q 015610 9 LILSNYPVILKEVNEKFLEAGIGRVRANLQSRVK---KGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQ 85 (403)
Q Consensus 9 la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~---~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~~~~K~ 85 (403)
....|++|.++--+++.++++.+++++.+..+.- .|-+++++.++..++|. -.++|+|+-+.--. ||
T Consensus 44 ~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~-------~s~~dil~VglG~P---kQ 113 (177)
T TIGR00696 44 AGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIA-------RSGAGIVFVGLGCP---KQ 113 (177)
T ss_pred HHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHH-------HcCCCEEEEEcCCc---Hh
Confidence 3467899999999999999999888877543221 35555555444444441 25688999888777 77
Q ss_pred HHHH-HHHhhCCCCcEE
Q 015610 86 QIFA-DLEKYCPPHCIL 101 (403)
Q Consensus 86 ~~~~-~l~~~~~~~~il 101 (403)
+.|- +..+..+...++
T Consensus 114 E~~~~~~~~~~~~~v~~ 130 (177)
T TIGR00696 114 EIWMRNHRHLKPDAVMI 130 (177)
T ss_pred HHHHHHhHHhCCCcEEE
Confidence 7774 454444444334
No 320
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=69.77 E-value=7 Score=36.08 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIG 31 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~ 31 (403)
+|..+|..|++.|++|++.+++++.+++..+
T Consensus 21 iG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~ 51 (254)
T PRK08085 21 IGFLLATGLAEYGAEIIINDITAERAELAVA 51 (254)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 5899999999999999999999887766543
No 321
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.60 E-value=10 Score=36.35 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=26.6
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
+.++.||+||-|+.-.--++. +.+++++++.+.+.+
T Consensus 196 ~~~~~ADIvI~AvG~~~~i~~-------~~vk~GavVIDvGin 231 (284)
T PRK14170 196 QVAKEADILVVATGLAKFVKK-------DYIKPGAIVIDVGMD 231 (284)
T ss_pred HHHhhCCEEEEecCCcCccCH-------HHcCCCCEEEEccCc
Confidence 346889999999986654443 347899999986654
No 322
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.39 E-value=9.7 Score=36.41 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=26.7
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
+.++.||+||-|+.-..-++. +.+++++++.+...+
T Consensus 197 ~~~k~ADIvIsAvGkp~~i~~-------~~vk~gavVIDvGin 232 (282)
T PRK14180 197 SHTTKADILIVAVGKPNFITA-------DMVKEGAVVIDVGIN 232 (282)
T ss_pred HHhhhcCEEEEccCCcCcCCH-------HHcCCCcEEEEeccc
Confidence 346889999999986654443 357899999986644
No 323
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.36 E-value=7.2 Score=36.58 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCH
Q 015610 1 MGSGIATALILSNYPVILKEVNE 23 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~ 23 (403)
+|..+|..|++.|++|++.+++.
T Consensus 20 IG~aia~~la~~G~~vil~~r~~ 42 (262)
T PRK07984 20 IAYGIAQAMHREGAELAFTYQND 42 (262)
T ss_pred HHHHHHHHHHHCCCEEEEEecch
Confidence 47889999999999999999873
No 324
>PRK05876 short chain dehydrogenase; Provisional
Probab=69.31 E-value=7.6 Score=36.66 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|++.|++|++.+++++.++...
T Consensus 18 IG~ala~~La~~G~~Vv~~~r~~~~l~~~~ 47 (275)
T PRK05876 18 IGLATGTEFARRGARVVLGDVDKPGLRQAV 47 (275)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988776543
No 325
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.95 E-value=9.3 Score=36.53 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=26.6
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
+.++.||+||-|+.-.--++.+ .+++++++.+.+.+
T Consensus 195 ~~~~~ADIvI~AvG~p~~i~~~-------~vk~GavVIDvGin 230 (282)
T PRK14169 195 QLTKEADILVVAVGVPHFIGAD-------AVKPGAVVIDVGIS 230 (282)
T ss_pred HHHhhCCEEEEccCCcCccCHH-------HcCCCcEEEEeecc
Confidence 3468899999999866544433 57899999986644
No 326
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.73 E-value=11 Score=36.26 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=25.5
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
+.++.||+||-|+.-..-++.+ .+++++++.+.+..
T Consensus 202 ~~~~~ADIvI~Avg~~~li~~~-------~vk~GavVIDVgi~ 237 (295)
T PRK14174 202 SYTRQADILIAAIGKARFITAD-------MVKPGAVVIDVGIN 237 (295)
T ss_pred HHHHhCCEEEEecCccCccCHH-------HcCCCCEEEEeecc
Confidence 4578999999999655333333 35899999875543
No 327
>PRK06139 short chain dehydrogenase; Provisional
Probab=68.66 E-value=7.4 Score=38.04 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRV 33 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i 33 (403)
+|..+|..|+..|++|++.+++++.++...+.+
T Consensus 19 IG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~ 51 (330)
T PRK06139 19 IGQATAEAFARRGARLVLAARDEEALQAVAEEC 51 (330)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 588999999999999999999999887665444
No 328
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=68.57 E-value=7.3 Score=36.27 Aligned_cols=34 Identities=29% Similarity=0.299 Sum_probs=29.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVR 34 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~ 34 (403)
.|..+|..|+.+|++|++..|..++|++...++.
T Consensus 18 iG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~ 51 (246)
T COG4221 18 IGEATARALAEAGAKVVLAARREERLEALADEIG 51 (246)
T ss_pred HHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhc
Confidence 4788999999999999999999999988765554
No 329
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.54 E-value=13 Score=35.69 Aligned_cols=35 Identities=9% Similarity=0.015 Sum_probs=25.2
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 106 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntS 106 (403)
+.++.||+||-|+.-..-++.+ .+++++++.+...
T Consensus 196 ~~~~~ADIvV~AvG~p~~i~~~-------~vk~GavVIDvGi 230 (285)
T PRK14191 196 FYTQNADIVCVGVGKPDLIKAS-------MVKKGAVVVDIGI 230 (285)
T ss_pred HHHHhCCEEEEecCCCCcCCHH-------HcCCCcEEEEeec
Confidence 3468899999999766544433 4689999987553
No 330
>PRK06199 ornithine cyclodeaminase; Validated
Probab=68.37 E-value=3.9 Score=40.92 Aligned_cols=51 Identities=16% Similarity=0.029 Sum_probs=33.5
Q ss_pred CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCC
Q 015610 14 YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIE 79 (403)
Q Consensus 14 ~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e 79 (403)
-+|.+|++++++.++..++++..+. |.. .+...++. +++++||+|+.|.+.
T Consensus 182 ~~V~v~~r~~~~a~~f~~~~~~~~~-----~~~----------~v~~~~s~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 182 DTIKIKGRGQKSLDSFATWVAETYP-----QIT----------NVEVVDSIEEVVRGSDIVTYCNSG 233 (379)
T ss_pred cEEEEECCCHHHHHHHHHHHHHhcC-----CCc----------eEEEeCCHHHHHcCCCEEEEccCC
Confidence 3999999999998876544432210 110 13345555 678999999998864
No 331
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=68.25 E-value=8.4 Score=35.53 Aligned_cols=30 Identities=33% Similarity=0.359 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|+..|++|++++++++.++...
T Consensus 23 IG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 52 (256)
T PRK06124 23 LGFEIARALAGAGAHVLVNGRNAATLEAAV 52 (256)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 488999999999999999999987765543
No 332
>PRK08703 short chain dehydrogenase; Provisional
Probab=68.20 E-value=8.5 Score=35.12 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=25.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..+|..|++.|++|++++++++.++..
T Consensus 18 iG~~la~~l~~~g~~V~~~~r~~~~~~~~ 46 (239)
T PRK08703 18 LGEQVAKAYAAAGATVILVARHQKKLEKV 46 (239)
T ss_pred HHHHHHHHHHHcCCEEEEEeCChHHHHHH
Confidence 58899999999999999999999876544
No 333
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=68.13 E-value=32 Score=31.20 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|+.|++.|+++|++|.+.|++.+..+..
T Consensus 26 IGrAia~~la~~Garv~v~dl~~~~A~at 54 (256)
T KOG1200|consen 26 IGRAIAQLLAKKGARVAVADLDSAAAEAT 54 (256)
T ss_pred HHHHHHHHHHhcCcEEEEeecchhhHHHH
Confidence 58999999999999999999998866554
No 334
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=68.08 E-value=17 Score=35.51 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=69.2
Q ss_pred cCccccccc-cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH-----------HHHhhcCCCCcE
Q 015610 56 SLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-----------LIGERTYSKDRI 123 (403)
Q Consensus 56 ~~i~~~~~~-~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~-----------~la~~~~~~~r~ 123 (403)
.++..++|+ +++.|||++|-++|-.. -..++.+|...+++++..+|.+=++..+ .|.+.+.-|-.+
T Consensus 91 ~NvvAv~dl~ea~~dADilvf~vPhQf--~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~v 168 (372)
T KOG2711|consen 91 ENVVAVPDLVEAAKDADILVFVVPHQF--IPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSV 168 (372)
T ss_pred CCeEecchHHHHhccCCEEEEeCChhh--HHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCcee
Confidence 346667777 78899999999999874 6678899999999999988877555432 223333333221
Q ss_pred E-EEecCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCCcEEecccch
Q 015610 124 V-GAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 173 (403)
Q Consensus 124 i-g~hf~~P~~~~~lvevv~~~~t~~e~~~~~~~l~~~lGk~~v~~~d~~G 173 (403)
+ |..+.+-+......|-.-|..-+.+.-..+..|++.--.+++++.|..|
T Consensus 169 L~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~ 219 (372)
T KOG2711|consen 169 LMGANIASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADG 219 (372)
T ss_pred ecCCchHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchH
Confidence 1 1122222223345555544332333333456666665566666666443
No 335
>PRK08265 short chain dehydrogenase; Provisional
Probab=67.85 E-value=7 Score=36.38 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|++.|++|++.+++++.+++..
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 47 (261)
T PRK08265 18 IGAAVARALVAAGARVAIVDIDADNGAAVA 47 (261)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 488999999999999999999988765543
No 336
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=67.66 E-value=4.1 Score=42.88 Aligned_cols=31 Identities=16% Similarity=0.121 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIG 31 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~ 31 (403)
+|..++..|++.|++|++++++.+.++...+
T Consensus 92 IG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~ 122 (576)
T PLN03209 92 VGSRTVRELLKLGFRVRAGVRSAQRAESLVQ 122 (576)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 4889999999999999999999988765543
No 337
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=67.53 E-value=8.5 Score=35.50 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|+..|++|++.+++++.++...
T Consensus 22 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (255)
T PRK07523 22 IGYALAEGLAQAGAEVILNGRDPAKLAAAA 51 (255)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 488899999999999999999988765543
No 338
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.51 E-value=14 Score=35.43 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=24.4
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 105 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasnt 105 (403)
+.++.||+||-|+.-..-++. +.+++++++.+..
T Consensus 198 ~~~~~ADIvi~avG~p~~v~~-------~~vk~gavVIDvG 231 (285)
T PRK10792 198 HHVRNADLLVVAVGKPGFIPG-------EWIKPGAIVIDVG 231 (285)
T ss_pred HHHhhCCEEEEcCCCcccccH-------HHcCCCcEEEEcc
Confidence 346889999999943332333 5688999998755
No 339
>PRK07814 short chain dehydrogenase; Provisional
Probab=67.46 E-value=8.6 Score=35.79 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|+..|++|++.+++++.++...
T Consensus 22 IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 51 (263)
T PRK07814 22 LGAAIALAFAEAGADVLIAARTESQLDEVA 51 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999988766543
No 340
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=67.45 E-value=8.6 Score=36.51 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIG 31 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~ 31 (403)
+|..||..|++.|.+|++.+++++.++...+
T Consensus 20 IG~aia~~la~~Ga~v~i~~r~~~~~~~~~~ 50 (270)
T KOG0725|consen 20 IGKAIALLLAKAGAKVVITGRSEERLEETAQ 50 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5889999999999999999999999877754
No 341
>PRK06172 short chain dehydrogenase; Provisional
Probab=67.36 E-value=9 Score=35.24 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|++.|++|++.+++++.+++..
T Consensus 19 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 48 (253)
T PRK06172 19 IGRATALAFAREGAKVVVADRDAAGGEETV 48 (253)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999998766554
No 342
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=67.27 E-value=12 Score=30.90 Aligned_cols=92 Identities=17% Similarity=0.125 Sum_probs=46.8
Q ss_pred ChHHHHHHHHH-CCCceE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEec
Q 015610 1 MGSGIATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAI 77 (403)
Q Consensus 1 MG~~iA~~la~-~G~~V~-l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav 77 (403)
||+.|+..+.. .|+++. .+|++++.... +.+ ..+...+. ..+...+++ +.+..+|+||+..
T Consensus 12 MG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~----g~~~~~~~----------~~~~v~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 12 MGRAIAEAILESPGFELVGAVDRKPSAKVG--KDV----GELAGIGP----------LGVPVTDDLEELLEEADVVIDFT 75 (124)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBC----HHHCTSST-----------SSBEBS-HHHHTTH-SEEEEES
T ss_pred HHHHHHHHHHhcCCcEEEEEEecCCccccc--chh----hhhhCcCC----------cccccchhHHHhcccCCEEEEcC
Confidence 89999999988 688855 47777622110 000 00001110 112334555 4466799999987
Q ss_pred CCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHH
Q 015610 78 IENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 113 (403)
Q Consensus 78 ~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~l 113 (403)
..+.=...++ ..+..+.-+.+.|++++-+++
T Consensus 76 --~p~~~~~~~~---~~~~~g~~~ViGTTG~~~~~~ 106 (124)
T PF01113_consen 76 --NPDAVYDNLE---YALKHGVPLVIGTTGFSDEQI 106 (124)
T ss_dssp ---HHHHHHHHH---HHHHHT-EEEEE-SSSHHHHH
T ss_pred --ChHHhHHHHH---HHHhCCCCEEEECCCCCHHHH
Confidence 3322233333 333346667777788876544
No 343
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=67.11 E-value=6.2 Score=37.78 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=24.1
Q ss_pred hHHHHHHHHHCCC-ceEEEeCCHHHHHHHH
Q 015610 2 GSGIATALILSNY-PVILKEVNEKFLEAGI 30 (403)
Q Consensus 2 G~~iA~~la~~G~-~V~l~d~~~~~l~~~~ 30 (403)
|++++..|+..|. +++++||++++.+...
T Consensus 139 arAi~~aL~~~g~~~i~i~nR~~~ka~~La 168 (283)
T PRK14027 139 GNAVAYALVTHGVQKLQVADLDTSRAQALA 168 (283)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence 6788999998887 7999999998776554
No 344
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=66.97 E-value=90 Score=30.38 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=25.6
Q ss_pred HHHHHHHCCCceEEEeCCHHHHHHHHHHHH
Q 015610 5 IATALILSNYPVILKEVNEKFLEAGIGRVR 34 (403)
Q Consensus 5 iA~~la~~G~~V~l~d~~~~~l~~~~~~i~ 34 (403)
++..+++.|++|+.+|.+++.++.+++++.
T Consensus 158 ~a~~la~~g~~V~gvD~S~~ml~~A~~~~~ 187 (315)
T PLN02585 158 LAIPLALEGAIVSASDISAAMVAEAERRAK 187 (315)
T ss_pred HHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 567888889999999999999998876553
No 345
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.73 E-value=8.9 Score=35.03 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..++..|+..|++|++.+++++.++...
T Consensus 17 iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~ 46 (251)
T PRK07231 17 IGEGIARRFAAEGARVVVTDRNEEAAERVA 46 (251)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 488999999999999999999998766543
No 346
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.70 E-value=11 Score=35.93 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=25.5
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 105 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasnt 105 (403)
+.++.||+||-|+.-..-++.+ .+++++++.+..
T Consensus 197 ~~~~~ADIvIsAvGkp~~i~~~-------~ik~gavVIDvG 230 (278)
T PRK14172 197 EVCKKADILVVAIGRPKFIDEE-------YVKEGAIVIDVG 230 (278)
T ss_pred HHHhhCCEEEEcCCCcCccCHH-------HcCCCcEEEEee
Confidence 3468899999999876544443 478999998754
No 347
>PRK06125 short chain dehydrogenase; Provisional
Probab=66.66 E-value=9.3 Score=35.37 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIG 31 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~ 31 (403)
+|..+|..|+..|++|++.+++++.++...+
T Consensus 19 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (259)
T PRK06125 19 IGAAAAEAFAAEGCHLHLVARDADALEALAA 49 (259)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 4889999999999999999999987765543
No 348
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=66.65 E-value=7.6 Score=36.06 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=25.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..+|..|+..|++|++.+++++.+++.
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 46 (263)
T PRK06200 18 IGRALVERFLAEGARVAVLERSAEKLASL 46 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58899999999999999999998876544
No 349
>PRK08643 acetoin reductase; Validated
Probab=66.64 E-value=9.5 Score=35.16 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|++.|++|++.+++++.+++..
T Consensus 14 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08643 14 IGFAIAKRLVEDGFKVAIVDYNEETAQAAA 43 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 589999999999999999999988766554
No 350
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.56 E-value=12 Score=35.81 Aligned_cols=36 Identities=8% Similarity=0.145 Sum_probs=26.3
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
+.++.||+||-|+.-.--++. +.+++++++.+...+
T Consensus 194 ~~~~~ADIvIsAvGkp~~i~~-------~~vk~GavVIDVGin 229 (287)
T PRK14173 194 AVTRRADVLVVAVGRPHLITP-------EMVRPGAVVVDVGIN 229 (287)
T ss_pred HHHhhCCEEEEecCCcCccCH-------HHcCCCCEEEEccCc
Confidence 346889999999986543333 357899999986644
No 351
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=66.52 E-value=39 Score=29.61 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=51.4
Q ss_pred HHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHH----cCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCChHHH
Q 015610 9 LILSNYPVILKEVNEKFLEAGIGRVRANLQSRVK----KGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLK 84 (403)
Q Consensus 9 la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~----~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~~~~K 84 (403)
+..++.+|.++--+++.++++.+++++.+-...- .|-+..++.....+.|+ -.++|+|+-++.-. |
T Consensus 42 ~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~-------~~~pdiv~vglG~P---k 111 (171)
T cd06533 42 AAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERIN-------ASGADILFVGLGAP---K 111 (171)
T ss_pred HHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHH-------HcCCCEEEEECCCC---H
Confidence 3456899999999999999998777776443332 23333333222222221 24678888888777 6
Q ss_pred HHHHH-HHHhhCCCCcEEE
Q 015610 85 QQIFA-DLEKYCPPHCILA 102 (403)
Q Consensus 85 ~~~~~-~l~~~~~~~~ila 102 (403)
|+.|. +..+.++...+++
T Consensus 112 QE~~~~~~~~~l~~~v~~~ 130 (171)
T cd06533 112 QELWIARHKDRLPVPVAIG 130 (171)
T ss_pred HHHHHHHHHHHCCCCEEEE
Confidence 77775 4666564444443
No 352
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=66.34 E-value=9 Score=35.31 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGR 32 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~ 32 (403)
+|..++..|+..|++|++.+++++..++..+.
T Consensus 19 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~ 50 (262)
T PRK13394 19 IGKEIALELARAGAAVAIADLNQDGANAVADE 50 (262)
T ss_pred HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Confidence 58899999999999999999999877666543
No 353
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=66.32 E-value=34 Score=31.54 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=61.7
Q ss_pred HHHHHCCCceEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCChHHHH
Q 015610 7 TALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQ 85 (403)
Q Consensus 7 ~~la~~G~~V~l~d~~~~-~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~~~~K~ 85 (403)
..|+..|-+|+++..+-. .+.. +.+.|.++ .+.-.-..+++.++++||-|+ +|.++-+
T Consensus 42 ~~Ll~~gA~VtVVap~i~~el~~-----------l~~~~~i~---------~~~r~~~~~dl~g~~LViaAT-dD~~vN~ 100 (223)
T PRK05562 42 KTFLKKGCYVYILSKKFSKEFLD-----------LKKYGNLK---------LIKGNYDKEFIKDKHLIVIAT-DDEKLNN 100 (223)
T ss_pred HHHHhCCCEEEEEcCCCCHHHHH-----------HHhCCCEE---------EEeCCCChHHhCCCcEEEECC-CCHHHHH
Confidence 457788999999965432 1111 12344432 011011225688999999986 4655555
Q ss_pred HHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCC--CCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 015610 86 QIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTSPQVIVDLLDIGKK 160 (403)
Q Consensus 86 ~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~--~~~~lvevv~~~~t~~e~~~~~~~l~~~ 160 (403)
.+.. .|....+++-+... +. -..|+.|. ...+++.-|.+...||.....++.-++.
T Consensus 101 ~I~~----~a~~~~~lvn~vd~-p~--------------~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~ 158 (223)
T PRK05562 101 KIRK----HCDRLYKLYIDCSD-YK--------------KGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKN 158 (223)
T ss_pred HHHH----HHHHcCCeEEEcCC-cc--------------cCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHH
Confidence 5544 44443444322221 11 12344554 3567776677767788877777665544
No 354
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.98 E-value=12 Score=35.73 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=26.1
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
+.++.||+||-|+.-.--++. +.+++++++.+...+
T Consensus 196 ~~~~~ADIvI~AvGk~~~i~~-------~~ik~gaiVIDvGin 231 (282)
T PRK14182 196 GEVGRADILVAAIGKAELVKG-------AWVKEGAVVIDVGMN 231 (282)
T ss_pred HHHhhCCEEEEecCCcCccCH-------HHcCCCCEEEEeece
Confidence 346889999999986543443 357899999886544
No 355
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=65.79 E-value=21 Score=34.48 Aligned_cols=79 Identities=23% Similarity=0.228 Sum_probs=54.3
Q ss_pred hHHHHHHHHHCCCceEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 2 GSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~-~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
|.+-|+.|...|-.|++-+++|= +++.++ .| .+.++--|+++.+|+++.+.--.
T Consensus 226 GKgCaqaLkg~g~~VivTEiDPI~ALQAaM------------eG-------------~~V~tm~ea~~e~difVTtTGc~ 280 (434)
T KOG1370|consen 226 GKGCAQALKGFGARVIVTEIDPICALQAAM------------EG-------------YEVTTLEEAIREVDIFVTTTGCK 280 (434)
T ss_pred chhHHHHHhhcCcEEEEeccCchHHHHHHh------------hc-------------cEeeeHHHhhhcCCEEEEccCCc
Confidence 78889999889999999999984 444443 12 22333337789999999987654
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEecCCCCCH
Q 015610 81 VSLKQQIFADLEKYCPPHCILASNTSTIDL 110 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilasntStl~~ 110 (403)
- .+.++=-+.++.|+|++ |.....+
T Consensus 281 d----ii~~~H~~~mk~d~IvC-N~Ghfd~ 305 (434)
T KOG1370|consen 281 D----IITGEHFDQMKNDAIVC-NIGHFDT 305 (434)
T ss_pred c----hhhHHHHHhCcCCcEEe-ccccccc
Confidence 3 33344334579999997 5655444
No 356
>PRK07774 short chain dehydrogenase; Provisional
Probab=65.11 E-value=10 Score=34.78 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=25.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..++..|+..|++|++.+++++.++..
T Consensus 18 iG~~la~~l~~~g~~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 18 IGQAYAEALAREGASVVVADINAEGAERV 46 (250)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58899999999999999999998766544
No 357
>PRK07677 short chain dehydrogenase; Provisional
Probab=65.05 E-value=11 Score=34.85 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|+..|++|++.+++++.++...
T Consensus 13 iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~ 42 (252)
T PRK07677 13 MGKAMAKRFAEEGANVVITGRTKEKLEEAK 42 (252)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999987765543
No 358
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=64.96 E-value=13 Score=34.79 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=23.5
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLE 27 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~ 27 (403)
.|+.++..|++.|++|++.+++++...
T Consensus 10 iG~~l~~~L~~~g~~V~~~~r~~~~~~ 36 (292)
T TIGR01777 10 IGRALTQRLTKDGHEVTILTRSPPAGA 36 (292)
T ss_pred hhHHHHHHHHHcCCEEEEEeCCCCCCC
Confidence 488999999999999999999887643
No 359
>PRK05866 short chain dehydrogenase; Provisional
Probab=64.94 E-value=9.8 Score=36.31 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIG 31 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~ 31 (403)
+|..+|..|++.|++|++.+++++.++...+
T Consensus 52 IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 52 IGEAAAEQFARRGATVVAVARREDLLDAVAD 82 (293)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 4889999999999999999999987765543
No 360
>PRK07832 short chain dehydrogenase; Provisional
Probab=64.79 E-value=10 Score=35.46 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|++.|++|++++++++.++...
T Consensus 12 iG~~la~~la~~G~~vv~~~r~~~~~~~~~ 41 (272)
T PRK07832 12 IGRATALRLAAQGAELFLTDRDADGLAQTV 41 (272)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999988765543
No 361
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.74 E-value=7.1 Score=36.92 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEK 24 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~ 24 (403)
+|..+|..|++.|++|++.+++.+
T Consensus 19 IG~aiA~~la~~G~~Vil~~r~~~ 42 (274)
T PRK08415 19 IAYGIAKACFEQGAELAFTYLNEA 42 (274)
T ss_pred HHHHHHHHHHHCCCEEEEEecCHH
Confidence 588899999999999999999853
No 362
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=64.72 E-value=49 Score=31.93 Aligned_cols=92 Identities=24% Similarity=0.281 Sum_probs=57.5
Q ss_pred hHHH-HHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcccccccccc--CCCCeEEEec
Q 015610 2 GSGI-ATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF--KDVDMVIEAI 77 (403)
Q Consensus 2 G~~i-A~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~--~~aDlVieav 77 (403)
|+|| |...++-|. +|+.+|+||.+++.+++.++.+ + +.. ..+.......+.. ...|+|+-.+
T Consensus 172 GSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N-------~-v~~------~~~~~~~~~~~~~~~~~~DvIVANI 237 (300)
T COG2264 172 GSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLN-------G-VEL------LVQAKGFLLLEVPENGPFDVIVANI 237 (300)
T ss_pred ChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHc-------C-Cch------hhhcccccchhhcccCcccEEEehh
Confidence 4454 334445687 5999999999999987654332 2 221 0111122222222 4799999988
Q ss_pred CCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 015610 78 IENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 111 (403)
Q Consensus 78 ~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~ 111 (403)
- .++-..+..++...++|+..++. |++-.+
T Consensus 238 L--A~vl~~La~~~~~~lkpgg~lIl--SGIl~~ 267 (300)
T COG2264 238 L--AEVLVELAPDIKRLLKPGGRLIL--SGILED 267 (300)
T ss_pred h--HHHHHHHHHHHHHHcCCCceEEE--EeehHh
Confidence 3 34555777788889999888875 565554
No 363
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.70 E-value=12 Score=35.70 Aligned_cols=34 Identities=15% Similarity=0.054 Sum_probs=25.4
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 105 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasnt 105 (403)
+.++.||+||-|+.-.--++.+ .+++++++.+..
T Consensus 196 ~~~~~ADIvIsAvGkp~~i~~~-------~vk~GavVIDvG 229 (282)
T PRK14166 196 LYTRQADLIIVAAGCVNLLRSD-------MVKEGVIVVDVG 229 (282)
T ss_pred HHHhhCCEEEEcCCCcCccCHH-------HcCCCCEEEEec
Confidence 3468899999999866544433 478999999755
No 364
>PRK06153 hypothetical protein; Provisional
Probab=64.54 E-value=12 Score=37.52 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=19.5
Q ss_pred ChHHHHHHHHHCCC-ceEEEeCC
Q 015610 1 MGSGIATALILSNY-PVILKEVN 22 (403)
Q Consensus 1 MG~~iA~~la~~G~-~V~l~d~~ 22 (403)
.|+.++..|++.|. +++++|-+
T Consensus 187 ~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 187 TGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred cHHHHHHHHHHcCCCEEEEECCC
Confidence 38889999999998 99999976
No 365
>PRK09186 flagellin modification protein A; Provisional
Probab=64.53 E-value=10 Score=34.80 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=26.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIG 31 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~ 31 (403)
+|..+|..|+..|++|++.+++++.++...+
T Consensus 16 iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~ 46 (256)
T PRK09186 16 IGSALVKAILEAGGIVIAADIDKEALNELLE 46 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEecChHHHHHHHH
Confidence 5889999999999999999999988766543
No 366
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=64.52 E-value=24 Score=33.70 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=50.2
Q ss_pred HHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccc-ccccc--cc-CCCCeEEEecC-C
Q 015610 5 IATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYE--SF-KDVDMVIEAII-E 79 (403)
Q Consensus 5 iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~--~~-~~aDlVieav~-e 79 (403)
.+..++..|++|+.+|.|++.++.+.+.++. .+. +++. ..+.. .+ ...|+|+.... .
T Consensus 134 ~~~~la~~g~~V~avD~s~~ai~~~~~~~~~-------~~l-----------~v~~~~~D~~~~~~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 134 NSLYLALLGFDVTAVDINQQSLENLQEIAEK-------ENL-----------NIRTGLYDINSASIQEEYDFILSTVVLM 195 (287)
T ss_pred HHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-------cCC-----------ceEEEEechhcccccCCccEEEEcchhh
Confidence 4667788899999999999999887644322 121 0111 11221 11 35798887642 1
Q ss_pred --ChHHHHHHHHHHHhhCCCCcEE
Q 015610 80 --NVSLKQQIFADLEKYCPPHCIL 101 (403)
Q Consensus 80 --~~~~K~~~~~~l~~~~~~~~il 101 (403)
+.+-...+++++.+.++|+..+
T Consensus 196 ~l~~~~~~~~l~~~~~~LkpgG~~ 219 (287)
T PRK12335 196 FLNRERIPAIIKNMQEHTNPGGYN 219 (287)
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEE
Confidence 2334667888999999998873
No 367
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=64.48 E-value=10 Score=35.60 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=25.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..+|..|++.|++|++.+++++.++..
T Consensus 22 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 50 (278)
T PRK08277 22 LGGAMAKELARAGAKVAILDRNQEKAEAV 50 (278)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 48899999999999999999998766544
No 368
>PRK08263 short chain dehydrogenase; Provisional
Probab=64.46 E-value=6.5 Score=36.91 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=25.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..+|..|+..|++|++.+++++.++..
T Consensus 15 iG~~~a~~l~~~g~~V~~~~r~~~~~~~~ 43 (275)
T PRK08263 15 FGRAWTEAALERGDRVVATARDTATLADL 43 (275)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 58899999999999999999998876543
No 369
>PRK07102 short chain dehydrogenase; Provisional
Probab=64.33 E-value=10 Score=34.61 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|++.|++|++.+++++..+...
T Consensus 13 iG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 42 (243)
T PRK07102 13 IARACARRYAAAGARLYLAARDVERLERLA 42 (243)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 478999999999999999999998765543
No 370
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=64.33 E-value=10 Score=34.97 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|+..|++|++.|++.+.++...
T Consensus 14 IG~~la~~l~~~g~~vi~~~r~~~~~~~~~ 43 (259)
T PRK12384 14 LGAFLCHGLAEEGYRVAVADINSEKAANVA 43 (259)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 488999999999999999999987765543
No 371
>PRK05884 short chain dehydrogenase; Provisional
Probab=64.22 E-value=8.9 Score=34.87 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|++.|++|++.+++++.++...
T Consensus 12 iG~~ia~~l~~~g~~v~~~~r~~~~~~~~~ 41 (223)
T PRK05884 12 LGRTIAEGFRNDGHKVTLVGARRDDLEVAA 41 (223)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999988776543
No 372
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=64.21 E-value=16 Score=33.16 Aligned_cols=106 Identities=16% Similarity=0.121 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHCCCc-eEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccc-cc--cccCCCCeEEEe
Q 015610 1 MGSGIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-DY--ESFKDVDMVIEA 76 (403)
Q Consensus 1 MG~~iA~~la~~G~~-V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~--~~~~~aDlViea 76 (403)
+|....+..+..|.+ ++.++..++..+.+....+..-.....-|. ...+.+ +.+..+.+ +. ..+++||+|+-.
T Consensus 53 ~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~-~~~~v~--l~~gdfl~~~~~~~~~s~AdvVf~N 129 (205)
T PF08123_consen 53 VGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK-RPGKVE--LIHGDFLDPDFVKDIWSDADVVFVN 129 (205)
T ss_dssp TSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB----EEE--EECS-TTTHHHHHHHGHC-SEEEE-
T ss_pred CCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc-ccccce--eeccCccccHhHhhhhcCCCEEEEe
Confidence 355555666667887 999999999887775544333222222222 111100 00111111 11 235889999874
Q ss_pred -cCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 015610 77 -IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 111 (403)
Q Consensus 77 -v~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~ 111 (403)
.-=+.+++..+ .++...+++++.|+| +.++.+.
T Consensus 130 n~~F~~~l~~~L-~~~~~~lk~G~~IIs-~~~~~~~ 163 (205)
T PF08123_consen 130 NTCFDPDLNLAL-AELLLELKPGARIIS-TKPFCPR 163 (205)
T ss_dssp -TTT-HHHHHHH-HHHHTTS-TT-EEEE-SS-SS-T
T ss_pred ccccCHHHHHHH-HHHHhcCCCCCEEEE-CCCcCCC
Confidence 32355677777 445556899999997 4455443
No 373
>PRK09072 short chain dehydrogenase; Provisional
Probab=64.16 E-value=10 Score=35.24 Aligned_cols=29 Identities=31% Similarity=0.336 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..++..|+..|++|++.+++++.++..
T Consensus 17 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 45 (263)
T PRK09072 17 IGQALAEALAAAGARLLLVGRNAEKLEAL 45 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 58899999999999999999998876554
No 374
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=63.99 E-value=40 Score=29.43 Aligned_cols=96 Identities=8% Similarity=0.006 Sum_probs=54.0
Q ss_pred HHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cc-cCCCCeEEEecCC---
Q 015610 5 IATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES-FKDVDMVIEAIIE--- 79 (403)
Q Consensus 5 iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~-~~~aDlVieav~e--- 79 (403)
++..++..|.+|+.+|.+++.++.+.+.+... +. . . ++ ...+. +. ....|+|+-..|-
T Consensus 33 ~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~-~---~-----~~-~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 33 VAIRLKGKGKCILTTDINPFAVKELRENAKLN-------NV-G---L-----DV-VMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred HHHHHHhcCCEEEEEECCHHHHHHHHHHHHHc-------CC-c---e-----EE-EEcccccccCCcccEEEECCCCCCC
Confidence 45566667778999999999998887655321 11 0 0 00 01111 11 2357888876542
Q ss_pred -------------------ChHHHHHHHHHHHhhCCCCcEEEecCCCCC-HHHHHhhc
Q 015610 80 -------------------NVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERT 117 (403)
Q Consensus 80 -------------------~~~~K~~~~~~l~~~~~~~~ilasntStl~-~~~la~~~ 117 (403)
...+-..++.++.+.++|+..+...+++.. ..++.+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l 153 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKL 153 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHH
Confidence 122345667777788888776554444433 44444443
No 375
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=63.81 E-value=11 Score=34.64 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=26.5
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIG 31 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~ 31 (403)
+|..+|..|+..|++|++.+++++.+++...
T Consensus 16 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 46 (258)
T PRK12429 16 IGLEIALALAKEGAKVVIADLNDEAAAAAAE 46 (258)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 4889999999999999999999988766543
No 376
>PRK07326 short chain dehydrogenase; Provisional
Probab=63.81 E-value=11 Score=34.14 Aligned_cols=30 Identities=33% Similarity=0.478 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..++..|+..|++|++.+++++.+++..
T Consensus 18 iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (237)
T PRK07326 18 IGFAIAEALLAEGYKVAITARDQKELEEAA 47 (237)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence 488999999999999999999987766543
No 377
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=63.63 E-value=9.7 Score=35.16 Aligned_cols=30 Identities=10% Similarity=0.255 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|++.|++|++.+++.+.+++..
T Consensus 18 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 47 (257)
T PRK07067 18 IGEAVAERYLAEGARVVIADIKPARARLAA 47 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 488999999999999999999998776543
No 378
>PRK07109 short chain dehydrogenase; Provisional
Probab=63.55 E-value=11 Score=36.90 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=27.7
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRV 33 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i 33 (403)
+|..+|..|++.|++|++.+++++.++...+.+
T Consensus 20 IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l 52 (334)
T PRK07109 20 VGRATARAFARRGAKVVLLARGEEGLEALAAEI 52 (334)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 488999999999999999999998877655444
No 379
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=63.45 E-value=75 Score=29.91 Aligned_cols=98 Identities=11% Similarity=0.085 Sum_probs=68.5
Q ss_pred cccccccCCCCeEEEecCCChHHHHHHHHHHHhhC----CCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCC
Q 015610 61 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYC----PPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP 136 (403)
Q Consensus 61 ~~~~~~~~~aDlVieav~e~~~~K~~~~~~l~~~~----~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~ 136 (403)
.++.+.++.+|+|+.++ |..++..+.... ..+-|+.|..-+.+++.+-+.+.-+.|++-+-+-.|....-
T Consensus 53 ~~n~~~~~~s~v~~~sv------Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~e 126 (267)
T KOG3124|consen 53 FTNLEVLQASDVVFLSV------KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGE 126 (267)
T ss_pred echHHHHhhccceeEee------cchhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhc
Confidence 33457788999999997 555555544443 44568888887888888887777556777666655765433
Q ss_pred eEE-EecCCCCCHHHHHHHHHHHHHcCCC
Q 015610 137 LLE-IVRTNQTSPQVIVDLLDIGKKIKKT 164 (403)
Q Consensus 137 lve-vv~~~~t~~e~~~~~~~l~~~lGk~ 164 (403)
..- +..+.....+..+.+.+++...|+.
T Consensus 127 g~sv~~~g~~~~~~D~~l~~~ll~~vG~~ 155 (267)
T KOG3124|consen 127 GASVYAIGCHATNEDLELVEELLSAVGLC 155 (267)
T ss_pred CcEEEeeCCCcchhhHHHHHHHHHhcCcc
Confidence 333 4566777788889999999999863
No 380
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=63.26 E-value=12 Score=34.89 Aligned_cols=30 Identities=20% Similarity=0.547 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|+..|++|++.+++++.+++..
T Consensus 22 iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~ 51 (265)
T PRK07097 22 IGFAIAKAYAKAGATIVFNDINQELVDKGL 51 (265)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 588999999999999999999998776554
No 381
>CHL00194 ycf39 Ycf39; Provisional
Probab=63.20 E-value=19 Score=34.66 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFL 26 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l 26 (403)
.|+.++..|...||+|++.+++++..
T Consensus 12 iG~~lv~~Ll~~g~~V~~l~R~~~~~ 37 (317)
T CHL00194 12 LGRQIVRQALDEGYQVRCLVRNLRKA 37 (317)
T ss_pred HHHHHHHHHHHCCCeEEEEEcChHHh
Confidence 48899999999999999999997653
No 382
>PRK06046 alanine dehydrogenase; Validated
Probab=63.19 E-value=12 Score=36.55 Aligned_cols=82 Identities=12% Similarity=0.065 Sum_probs=46.5
Q ss_pred hHHHHHHHHH-CCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecC
Q 015610 2 GSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAII 78 (403)
Q Consensus 2 G~~iA~~la~-~G~-~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~ 78 (403)
|...+..++. .+. .|.+||++++..++..+++.+. .+. .+....+. +.+. +|+|+.|.|
T Consensus 141 a~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~------~~~-----------~v~~~~~~~~~l~-aDiVv~aTp 202 (326)
T PRK06046 141 ARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV------VGC-----------DVTVAEDIEEACD-CDILVTTTP 202 (326)
T ss_pred HHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh------cCc-----------eEEEeCCHHHHhh-CCEEEEecC
Confidence 4444555543 343 8888999999887765443211 110 12234455 3454 899999988
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 79 ENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
... .+|. .+.+++++.|.+-.|.
T Consensus 203 s~~----P~~~--~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 203 SRK----PVVK--AEWIKEGTHINAIGAD 225 (326)
T ss_pred CCC----cEec--HHHcCCCCEEEecCCC
Confidence 653 2222 1235778777655543
No 383
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=63.02 E-value=14 Score=34.93 Aligned_cols=88 Identities=18% Similarity=0.104 Sum_probs=51.2
Q ss_pred HHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccc-cccccCCC-CeEEE-ecCCC
Q 015610 4 GIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-DYESFKDV-DMVIE-AIIEN 80 (403)
Q Consensus 4 ~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~~a-DlVie-av~e~ 80 (403)
=+...||+-|..|+..|.+++.++.|.+. ...++.......-|+.+-+ +.|.+.++ |.|+- -|-|.
T Consensus 102 LLSepLArlga~V~GID~s~~~V~vA~~h-----------~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevleH 170 (282)
T KOG1270|consen 102 LLSEPLARLGAQVTGIDASDDMVEVANEH-----------KKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVLEH 170 (282)
T ss_pred ccchhhHhhCCeeEeecccHHHHHHHHHh-----------hhcCchhccccceeeehhhcchhhcccccceeeeHHHHHH
Confidence 35678999999999999999999988642 2222222211112343322 33444333 44432 12333
Q ss_pred hHHHHHHHHHHHhhCCCCcEEE
Q 015610 81 VSLKQQIFADLEKYCPPHCILA 102 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ila 102 (403)
.+=.++++..+.+.++|+..+.
T Consensus 171 V~dp~~~l~~l~~~lkP~G~lf 192 (282)
T KOG1270|consen 171 VKDPQEFLNCLSALLKPNGRLF 192 (282)
T ss_pred HhCHHHHHHHHHHHhCCCCceE
Confidence 3336677778888888885544
No 384
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=62.90 E-value=21 Score=35.10 Aligned_cols=25 Identities=20% Similarity=0.073 Sum_probs=18.9
Q ss_pred HHHHHHCC-CceEEEeCCHHHHHHHH
Q 015610 6 ATALILSN-YPVILKEVNEKFLEAGI 30 (403)
Q Consensus 6 A~~la~~G-~~V~l~d~~~~~l~~~~ 30 (403)
++.+...| .+|++.|+++++++.++
T Consensus 185 ~~~a~~~Ga~~Viv~d~~~~Rl~~A~ 210 (350)
T COG1063 185 IALAKLLGASVVIVVDRSPERLELAK 210 (350)
T ss_pred HHHHHHcCCceEEEeCCCHHHHHHHH
Confidence 34444567 48888899999999885
No 385
>PRK09242 tropinone reductase; Provisional
Probab=62.83 E-value=12 Score=34.45 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIG 31 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~ 31 (403)
+|..+|..|++.|++|++.+++++.+++..+
T Consensus 21 IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~ 51 (257)
T PRK09242 21 IGLAIAREFLGLGADVLIVARDADALAQARD 51 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 5889999999999999999999887665543
No 386
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.80 E-value=12 Score=34.28 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|+..|+.|++.+++++.++...
T Consensus 17 iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~ 46 (253)
T PRK08217 17 LGRAMAEYLAQKGAKLALIDLNQEKLEEAV 46 (253)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 488899999999999999999988766554
No 387
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.77 E-value=15 Score=35.15 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=26.0
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
+.++.||+||-|+.-..-++. +.+++++++.+...+
T Consensus 196 ~~~~~ADIvV~AvGkp~~i~~-------~~vk~gavvIDvGin 231 (281)
T PRK14183 196 AHTKKADIVIVGVGKPNLITE-------DMVKEGAIVIDIGIN 231 (281)
T ss_pred HHHhhCCEEEEecCcccccCH-------HHcCCCcEEEEeecc
Confidence 346889999999976544443 347899999876544
No 388
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.66 E-value=15 Score=35.29 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=25.5
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 105 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasnt 105 (403)
+.++.||+||-|+.-.--++.+ .+++++++.+..
T Consensus 198 ~~~~~ADIvV~AvGkp~~i~~~-------~vk~GavVIDvG 231 (288)
T PRK14171 198 SITSKADIVVAAIGSPLKLTAE-------YFNPESIVIDVG 231 (288)
T ss_pred HHHhhCCEEEEccCCCCccCHH-------HcCCCCEEEEee
Confidence 3468899999999866544443 478999998755
No 389
>PRK07576 short chain dehydrogenase; Provisional
Probab=62.43 E-value=12 Score=34.95 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=25.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..+|..|+..|++|++.+++++.++..
T Consensus 21 IG~~la~~l~~~G~~V~~~~r~~~~~~~~ 49 (264)
T PRK07576 21 INLGIAQAFARAGANVAVASRSQEKVDAA 49 (264)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 47889999999999999999998876554
No 390
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.39 E-value=15 Score=35.10 Aligned_cols=36 Identities=8% Similarity=0.094 Sum_probs=26.9
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
+.++.||+||-|+.-..-++. +.+++++++.+.+.+
T Consensus 199 ~~~k~ADIvV~AvGkp~~i~~-------~~ik~GavVIDvGin 234 (284)
T PRK14193 199 AHTRRADIIVAAAGVAHLVTA-------DMVKPGAAVLDVGVS 234 (284)
T ss_pred HHHHhCCEEEEecCCcCccCH-------HHcCCCCEEEEcccc
Confidence 457899999999987654444 357899999986544
No 391
>PRK07454 short chain dehydrogenase; Provisional
Probab=62.35 E-value=13 Score=33.96 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=24.9
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..++..|++.|++|++.+++++..+..
T Consensus 18 iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 46 (241)
T PRK07454 18 IGKATALAFAKAGWDLALVARSQDALEAL 46 (241)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 47889999999999999999998776544
No 392
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=62.22 E-value=31 Score=28.95 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHcCCCcEEeccc--c-----hhhhhhhHHHHHHHHHHHHHc-CCCHHHHHHHH
Q 015610 147 SPQVIVDLLDIGKKIKKTPIVVGNC--T-----GFAVNRMFFPYTQAAFLLVER-GTDLYLIDRAI 204 (403)
Q Consensus 147 ~~e~~~~~~~l~~~lGk~~v~~~d~--~-----G~i~nRi~~~~~~Ea~~l~~~-G~~~~~iD~a~ 204 (403)
+++.++.++.+++.+|.+++.+... + .-++++....++..|..++++ |++.++..+++
T Consensus 9 d~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L 74 (132)
T PF10728_consen 9 DEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEAL 74 (132)
T ss_dssp SHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHH
T ss_pred CHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHH
Confidence 8899999999999999999998432 2 136888889899999988865 88876644443
No 393
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=62.22 E-value=14 Score=36.53 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=25.7
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 105 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasnt 105 (403)
+.++.||+||-|+.-.--++.+ .+++++++.+..
T Consensus 270 ~~~r~ADIVIsAvGkp~~i~~d-------~vK~GAvVIDVG 303 (364)
T PLN02616 270 EITREADIIISAVGQPNMVRGS-------WIKPGAVVIDVG 303 (364)
T ss_pred HHHhhCCEEEEcCCCcCcCCHH-------HcCCCCEEEecc
Confidence 3468899999999866545444 478999998755
No 394
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=62.16 E-value=11 Score=38.02 Aligned_cols=30 Identities=17% Similarity=0.073 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHCC-CceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSN-YPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G-~~V~l~d~~~~~l~~~~ 30 (403)
||...|.+|+.+| .+|++.+|+.++..+..
T Consensus 189 m~~lva~~L~~~g~~~i~IaNRT~erA~~La 219 (414)
T COG0373 189 MGELVAKHLAEKGVKKITIANRTLERAEELA 219 (414)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 7888999999999 59999999999877653
No 395
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=62.06 E-value=30 Score=30.36 Aligned_cols=92 Identities=16% Similarity=0.175 Sum_probs=61.0
Q ss_pred HHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHc----CCCCHHHHHHhhcCccccccccccCCCCeEEEecCCChHH
Q 015610 8 ALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKK----GKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 83 (403)
Q Consensus 8 ~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~----g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~~~~ 83 (403)
.+...|++|.++--+++.++++.+.+++.+-.+.-. |-+++++.++..+.|. -.++|+|+-++.-.
T Consensus 43 ~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~-------~~~pdiv~vglG~P--- 112 (172)
T PF03808_consen 43 RAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRIN-------ASGPDIVFVGLGAP--- 112 (172)
T ss_pred HHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHH-------HcCCCEEEEECCCC---
Confidence 344578999999999999999988887776443322 3344555555554442 25789999998877
Q ss_pred HHHHHH-HHHhhCCCCcEEEecCCCCCH
Q 015610 84 KQQIFA-DLEKYCPPHCILASNTSTIDL 110 (403)
Q Consensus 84 K~~~~~-~l~~~~~~~~ilasntStl~~ 110 (403)
||+.|- +..+.++.. ++.+...+++.
T Consensus 113 kQE~~~~~~~~~l~~~-v~i~vG~~~d~ 139 (172)
T PF03808_consen 113 KQERWIARHRQRLPAG-VIIGVGGAFDF 139 (172)
T ss_pred HHHHHHHHHHHHCCCC-EEEEECchhhh
Confidence 777775 566667666 44444544443
No 396
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.04 E-value=16 Score=35.08 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=24.6
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 105 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasnt 105 (403)
+.++.||+||-|+.-..-++.+ .+++++++.+..
T Consensus 200 ~~~~~ADIVI~AvG~p~li~~~-------~vk~GavVIDVG 233 (286)
T PRK14184 200 EECREADFLFVAIGRPRFVTAD-------MVKPGAVVVDVG 233 (286)
T ss_pred HHHHhCCEEEEecCCCCcCCHH-------HcCCCCEEEEee
Confidence 4578899999999655444433 458999998755
No 397
>PRK07035 short chain dehydrogenase; Provisional
Probab=61.85 E-value=13 Score=34.14 Aligned_cols=30 Identities=23% Similarity=0.150 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..++..|++.|++|++.+++++.++...
T Consensus 20 IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~ 49 (252)
T PRK07035 20 IGEAIAKLLAQQGAHVIVSSRKLDGCQAVA 49 (252)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 488999999999999999999987766543
No 398
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=61.79 E-value=10 Score=35.26 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=25.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..+|..|+..|++|++.+++.+.++..
T Consensus 17 IG~~ia~~l~~~G~~V~~~~r~~~~~~~l 45 (262)
T TIGR03325 17 LGRAIVDRFVAEGARVAVLDKSAAGLQEL 45 (262)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58999999999999999999998766543
No 399
>PRK05599 hypothetical protein; Provisional
Probab=61.68 E-value=12 Score=34.58 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRV 33 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i 33 (403)
+|.++|..|+ .|++|++.+++++.++...+.+
T Consensus 12 IG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l 43 (246)
T PRK05599 12 IAGEIATLLC-HGEDVVLAARRPEAAQGLASDL 43 (246)
T ss_pred HHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHH
Confidence 5889999998 5999999999998877655444
No 400
>PRK06197 short chain dehydrogenase; Provisional
Probab=61.64 E-value=13 Score=35.59 Aligned_cols=33 Identities=27% Similarity=0.227 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRV 33 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i 33 (403)
+|..+|..|++.|++|++.+++++..+.+.+.+
T Consensus 28 IG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l 60 (306)
T PRK06197 28 LGYETAAALAAKGAHVVLAVRNLDKGKAAAARI 60 (306)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 588999999999999999999988876654433
No 401
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=61.59 E-value=16 Score=35.89 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=26.5
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
+.++.||+||-|+.-.--++.+ .+++++++.+...+
T Consensus 253 ~~~~~ADIvIsAvGkp~~v~~d-------~vk~GavVIDVGin 288 (345)
T PLN02897 253 QITRKADIVIAAAGIPNLVRGS-------WLKPGAVVIDVGTT 288 (345)
T ss_pred HHHhhCCEEEEccCCcCccCHH-------HcCCCCEEEEcccc
Confidence 3468899999999876544443 47899999986543
No 402
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=61.41 E-value=9.8 Score=38.55 Aligned_cols=29 Identities=7% Similarity=-0.055 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHCCC-ceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNY-PVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~-~V~l~d~~~~~l~~~ 29 (403)
||..+|..|+..|. ++++++|+.++.+..
T Consensus 192 ~a~~va~~L~~~g~~~I~V~nRt~~ra~~L 221 (414)
T PRK13940 192 TGELLFRHVTALAPKQIMLANRTIEKAQKI 221 (414)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 78899999999995 799999998876544
No 403
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=61.36 E-value=12 Score=34.47 Aligned_cols=30 Identities=30% Similarity=0.269 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|++.|++|++.+++.+.++...
T Consensus 24 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 53 (259)
T PRK08213 24 LGLQIAEALGEAGARVVLSARKAEELEEAA 53 (259)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 488999999999999999999988766554
No 404
>PRK08251 short chain dehydrogenase; Provisional
Probab=61.32 E-value=13 Score=33.99 Aligned_cols=30 Identities=20% Similarity=0.208 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|++.|++|++.+++++.++...
T Consensus 14 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (248)
T PRK08251 14 LGAGMAREFAAKGRDLALCARRTDRLEELK 43 (248)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 488999999999999999999998876553
No 405
>PRK05650 short chain dehydrogenase; Provisional
Probab=61.25 E-value=13 Score=34.57 Aligned_cols=30 Identities=27% Similarity=0.327 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|++.|++|++.+++++.++...
T Consensus 12 IG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 41 (270)
T PRK05650 12 LGRAIALRWAREGWRLALADVNEEGGEETL 41 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 588999999999999999999988766654
No 406
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=61.20 E-value=9.1 Score=33.53 Aligned_cols=94 Identities=18% Similarity=0.185 Sum_probs=50.4
Q ss_pred hHHHHHHHHHCCCceEE--EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc----cccCCCCeEEE
Q 015610 2 GSGIATALILSNYPVIL--KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY----ESFKDVDMVIE 75 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l--~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~~~~aDlVie 75 (403)
|-.+|.+|++.|++|++ +...++. .+..+.+++.+.+.|.. +....+. ..+..+|+||+
T Consensus 41 gl~~AR~L~~~G~~V~v~~~~~~~~~----~~~~~~~~~~~~~~g~~-----------~~~~~~~~~~~~~~~~~dlIID 105 (169)
T PF03853_consen 41 GLVAARHLANRGYNVTVYLVGPPEKL----SEDAKQQLEILKKMGIK-----------IIELDSDEDLSEALEPADLIID 105 (169)
T ss_dssp HHHHHHHHHHTTCEEEEEEEESSSST----SHHHHHHHHHHHHTT-E-----------EESSCCGSGGGHHGSCESEEEE
T ss_pred HHHHHHHHHHCCCeEEEEEEeccccC----CHHHHHHHHHHHhcCCc-----------EeeccccchhhcccccccEEEE
Confidence 45688999999999998 3322222 22234455555555531 1111111 22458999999
Q ss_pred ecCCCh------HHHHHHHHHHHhhCCCCcEEEecCCCCCHH
Q 015610 76 AIIENV------SLKQQIFADLEKYCPPHCILASNTSTIDLN 111 (403)
Q Consensus 76 av~e~~------~~K~~~~~~l~~~~~~~~ilasntStl~~~ 111 (403)
|+...- ..-+.++..+.+. +.-+|=.+--|++..+
T Consensus 106 al~G~G~~~~l~~~~~~~i~~iN~~-~~~viAiDiPSGl~~d 146 (169)
T PF03853_consen 106 ALFGTGFSGPLRGPIAELIDWINAS-RAPVIAIDIPSGLDAD 146 (169)
T ss_dssp ES-STTGGSCGSTCHHHHHHHHHHH-CSEEEEESS-TTCBTT
T ss_pred ecccCCCCCCcCHHHHHHHHHHhcc-CCcEEEecCCCCccCC
Confidence 997642 2345566666555 2223333666776554
No 407
>PRK06101 short chain dehydrogenase; Provisional
Probab=61.17 E-value=10 Score=34.66 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEA 28 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~ 28 (403)
+|..+|..|+..|++|++.+++++.++.
T Consensus 13 iG~~la~~L~~~G~~V~~~~r~~~~~~~ 40 (240)
T PRK06101 13 IGKQLALDYAKQGWQVIACGRNQSVLDE 40 (240)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 4889999999999999999999876544
No 408
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=61.10 E-value=9.6 Score=34.99 Aligned_cols=83 Identities=12% Similarity=0.087 Sum_probs=49.0
Q ss_pred HHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCC---CCHHHHH--HhhcCccc-cccc-----cccCCCCeEE
Q 015610 6 ATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK---MTQEKFE--KTISLLTG-VLDY-----ESFKDVDMVI 74 (403)
Q Consensus 6 A~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~---~~~~~~~--~~~~~i~~-~~~~-----~~~~~aDlVi 74 (403)
+..|+..||+|+.+|.++.+++.+.+ +.+. .+..... ..-.+|+. ..|+ +.+...|+|+
T Consensus 52 ~~~La~~G~~VvGvDls~~Ai~~~~~----------e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iy 121 (218)
T PF05724_consen 52 MLWLAEQGHDVVGVDLSPTAIEQAFE----------ENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIY 121 (218)
T ss_dssp HHHHHHTTEEEEEEES-HHHHHHHHH----------HCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEE
T ss_pred HHHHHHCCCeEEEEecCHHHHHHHHH----------HhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEE
Confidence 45788999999999999999988742 2221 0000000 00011221 1122 2334579999
Q ss_pred Ee-----cCCChHHHHHHHHHHHhhCCCCcE
Q 015610 75 EA-----IIENVSLKQQIFADLEKYCPPHCI 100 (403)
Q Consensus 75 ea-----v~e~~~~K~~~~~~l~~~~~~~~i 100 (403)
+. +| .+......+.+.+.++|+..
T Consensus 122 Dr~~l~Alp--p~~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 122 DRTFLCALP--PEMRERYAQQLASLLKPGGR 150 (218)
T ss_dssp ECSSTTTS---GGGHHHHHHHHHHCEEEEEE
T ss_pred EecccccCC--HHHHHHHHHHHHHHhCCCCc
Confidence 94 44 44688888889999999887
No 409
>PRK07024 short chain dehydrogenase; Provisional
Probab=61.03 E-value=10 Score=35.10 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..+|..|++.|++|++.+++++.++..
T Consensus 14 IG~~la~~l~~~G~~v~~~~r~~~~~~~~ 42 (257)
T PRK07024 14 IGQALAREYARQGATLGLVARRTDALQAF 42 (257)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 48899999999999999999998776544
No 410
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=60.80 E-value=99 Score=29.87 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=61.8
Q ss_pred HHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccc-ccccc-----ccCCCCeEEEec
Q 015610 4 GIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYE-----SFKDVDMVIEAI 77 (403)
Q Consensus 4 ~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~-----~~~~aDlVieav 77 (403)
.++..++..|.+|+.+|.++++++.+.+.++.. | ++ ++++ ..+.+ .....|+||---
T Consensus 186 ~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~-------~-l~---------~v~~~~~D~~~~~~~~~~~~D~Vv~dP 248 (315)
T PRK03522 186 GFGLHCATPGMQLTGIEISAEAIACAKQSAAEL-------G-LT---------NVQFQALDSTQFATAQGEVPDLVLVNP 248 (315)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHc-------C-CC---------ceEEEEcCHHHHHHhcCCCCeEEEECC
Confidence 467788888999999999999999887554321 2 11 1111 11111 112469998775
Q ss_pred CCChHHHHHHHHHHHhhCCCCcEEE-ecCCCCCHHHHHhhcCCCCcEEEEecCCCCCCCCeEEEe
Q 015610 78 IENVSLKQQIFADLEKYCPPHCILA-SNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV 141 (403)
Q Consensus 78 ~e~~~~K~~~~~~l~~~~~~~~ila-sntStl~~~~la~~~~~~~r~ig~hf~~P~~~~~lvevv 141 (403)
| ...+...+...|.+. .++.|+- |+...-...++... . .-++--+.+++--...+-+|.+
T Consensus 249 P-r~G~~~~~~~~l~~~-~~~~ivyvsc~p~t~~rd~~~l-~-~y~~~~~~~~DmFP~T~HvE~v 309 (315)
T PRK03522 249 P-RRGIGKELCDYLSQM-APRFILYSSCNAQTMAKDLAHL-P-GYRIERVQLFDMFPHTAHYEVL 309 (315)
T ss_pred C-CCCccHHHHHHHHHc-CCCeEEEEECCcccchhHHhhc-c-CcEEEEEEEeccCCCCCeEEEE
Confidence 5 334555666666664 4455544 43333233344333 1 1233444444322233456654
No 411
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.75 E-value=16 Score=35.19 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=25.3
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 105 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasnt 105 (403)
+.++.||+||-|+.-.--++.+ .+++++++.+..
T Consensus 199 ~~~~~ADIvVsAvGkp~~i~~~-------~ik~gaiVIDVG 232 (294)
T PRK14187 199 DYCSKADILVAAVGIPNFVKYS-------WIKKGAIVIDVG 232 (294)
T ss_pred HHHhhCCEEEEccCCcCccCHH-------HcCCCCEEEEec
Confidence 3468899999999876544443 477999998754
No 412
>PRK14967 putative methyltransferase; Provisional
Probab=60.73 E-value=50 Score=30.05 Aligned_cols=29 Identities=10% Similarity=0.104 Sum_probs=21.9
Q ss_pred HHHHHHHCCC-ceEEEeCCHHHHHHHHHHH
Q 015610 5 IATALILSNY-PVILKEVNEKFLEAGIGRV 33 (403)
Q Consensus 5 iA~~la~~G~-~V~l~d~~~~~l~~~~~~i 33 (403)
++..+++.|. +|+.+|++++.++.+++.+
T Consensus 50 ~~~~la~~~~~~v~~vD~s~~~l~~a~~n~ 79 (223)
T PRK14967 50 LAVAAAAAGAGSVTAVDISRRAVRSARLNA 79 (223)
T ss_pred HHHHHHHcCCCeEEEEECCHHHHHHHHHHH
Confidence 4455666676 9999999999988776544
No 413
>PRK12939 short chain dehydrogenase; Provisional
Probab=60.68 E-value=14 Score=33.74 Aligned_cols=31 Identities=16% Similarity=0.094 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIG 31 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~ 31 (403)
+|..+|..|++.|++|++.+++++.++...+
T Consensus 19 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (250)
T PRK12939 19 LGAAFAEALAEAGATVAFNDGLAAEARELAA 49 (250)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 4889999999999999999999887766543
No 414
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.25 E-value=17 Score=34.88 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=26.8
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
+.++.||+||-|+.-.--++.+ .+++++++.+...+
T Consensus 196 ~~~~~ADIvV~AvG~p~~i~~~-------~ik~GavVIDvGin 231 (287)
T PRK14181 196 EILKTADIIIAAIGVPLFIKEE-------MIAEKAVIVDVGTS 231 (287)
T ss_pred HHHhhCCEEEEccCCcCccCHH-------HcCCCCEEEEeccc
Confidence 3478999999999876544443 47899999876543
No 415
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=60.13 E-value=1e+02 Score=28.74 Aligned_cols=23 Identities=9% Similarity=-0.112 Sum_probs=19.5
Q ss_pred HHHHHHHHCCCceEEEeCCHHHH
Q 015610 4 GIATALILSNYPVILKEVNEKFL 26 (403)
Q Consensus 4 ~iA~~la~~G~~V~l~d~~~~~l 26 (403)
.+|..++..|.+|.++|.++...
T Consensus 22 ~la~~l~~~g~~vl~iD~D~~n~ 44 (241)
T PRK13886 22 TIAQYKASKGQKPLCIDTDPVNA 44 (241)
T ss_pred HHHHHHHhCCCCEEEEECCCCCc
Confidence 46788888999999999998753
No 416
>PRK08589 short chain dehydrogenase; Validated
Probab=59.77 E-value=14 Score=34.64 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|+..|++|++.+++ +.+++..
T Consensus 18 IG~aia~~l~~~G~~vi~~~r~-~~~~~~~ 46 (272)
T PRK08589 18 IGQASAIALAQEGAYVLAVDIA-EAVSETV 46 (272)
T ss_pred HHHHHHHHHHHCCCEEEEEeCc-HHHHHHH
Confidence 4889999999999999999999 5555443
No 417
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=59.40 E-value=29 Score=26.44 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=17.0
Q ss_pred CeEEEecCCChHHHHHHHHHHHhhCCCCcEEEe
Q 015610 71 DMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 103 (403)
Q Consensus 71 DlVieav~e~~~~K~~~~~~l~~~~~~~~ilas 103 (403)
|++|-|++...-+..+ .+. ...+++++.+
T Consensus 56 di~i~~~~~~~~~~~~---~~~-~~~~~~~v~~ 84 (86)
T cd05191 56 DILVTATPAGVPVLEE---ATA-KINEGAVVID 84 (86)
T ss_pred CEEEEcCCCCCCchHH---HHH-hcCCCCEEEe
Confidence 8888888776544333 122 2355666654
No 418
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=59.31 E-value=29 Score=31.53 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEK 24 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~ 24 (403)
.|++++..|...|++|++.-|++.
T Consensus 10 ~G~~v~~~L~~~~~~V~~l~R~~~ 33 (233)
T PF05368_consen 10 QGRSVVRALLSAGFSVRALVRDPS 33 (233)
T ss_dssp HHHHHHHHHHHTTGCEEEEESSSH
T ss_pred HHHHHHHHHHhCCCCcEEEEeccc
Confidence 389999999999999999999984
No 419
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=59.29 E-value=17 Score=34.25 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=18.5
Q ss_pred ChHHHHHHHHH-CCCceEE-EeCCHHHH
Q 015610 1 MGSGIATALIL-SNYPVIL-KEVNEKFL 26 (403)
Q Consensus 1 MG~~iA~~la~-~G~~V~l-~d~~~~~l 26 (403)
||+.++..+.. .+++|+. +|++++..
T Consensus 13 mG~~i~~~l~~~~~~elvav~d~~~~~~ 40 (257)
T PRK00048 13 MGRELIEAVEAAEDLELVAAVDRPGSPL 40 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCccc
Confidence 78888877765 4677665 88877653
No 420
>PRK07069 short chain dehydrogenase; Validated
Probab=59.28 E-value=14 Score=33.70 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCC-HHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVN-EKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~-~~~l~~~ 29 (403)
+|..+|..|++.|++|++.+++ ++.++..
T Consensus 11 iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 40 (251)
T PRK07069 11 LGRAIARRMAEQGAKVFLTDINDAAGLDAF 40 (251)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcchHHHHH
Confidence 5889999999999999999998 5554443
No 421
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=59.16 E-value=11 Score=37.76 Aligned_cols=29 Identities=28% Similarity=0.523 Sum_probs=23.2
Q ss_pred ChHH-HHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSG-IATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~-iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
||++ ++..|.++|++|+++|++++.++..
T Consensus 11 ~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL 40 (381)
T PRK02318 11 IGRGFIGKLLADNGFEVTFVDVNQELIDAL 40 (381)
T ss_pred hhHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence 5764 4788889999999999988765554
No 422
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=59.14 E-value=25 Score=34.16 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=32.7
Q ss_pred cccc-cccCCCCeEEEecCC--------------ChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHH
Q 015610 61 VLDY-ESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 114 (403)
Q Consensus 61 ~~~~-~~~~~aDlVieav~e--------------~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la 114 (403)
+.++ +++++||+||-+.-- +..+-+.+..+|.+++++++++...| -|++-++
T Consensus 51 ~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~~i~~~a~~~~ivivvt--NPvDv~t 117 (313)
T TIGR01756 51 TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIG--NPVNTNC 117 (313)
T ss_pred cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CchHHHH
Confidence 4566 699999999975433 12234444556888888888665433 4665444
No 423
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=59.10 E-value=15 Score=33.91 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.1
Q ss_pred ChHHHHHHHHHCCCc---eEEEeCCH
Q 015610 1 MGSGIATALILSNYP---VILKEVNE 23 (403)
Q Consensus 1 MG~~iA~~la~~G~~---V~l~d~~~ 23 (403)
+|.++|..|+..|.. ++++|++.
T Consensus 36 Ag~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 36 AGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred HHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 588999999999985 99999993
No 424
>PRK00811 spermidine synthase; Provisional
Probab=59.01 E-value=42 Score=31.99 Aligned_cols=93 Identities=12% Similarity=0.208 Sum_probs=53.5
Q ss_pred HHHHHHHHHC-CC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccc-cccc-c---c-cCCCCeEE
Q 015610 3 SGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDY-E---S-FKDVDMVI 74 (403)
Q Consensus 3 ~~iA~~la~~-G~-~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~-~---~-~~~aDlVi 74 (403)
++++..+++. +. +|+++|+|++.++.+++.+... ..+..+. .|++. ..|. + . -..-|+||
T Consensus 88 G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~-----~~~~~~d-------~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 88 GGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEI-----AGGAYDD-------PRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHh-----ccccccC-------CceEEEECchHHHHhhCCCcccEEE
Confidence 3455556665 44 8999999999998886543221 1111000 01111 1111 1 1 13468888
Q ss_pred EecCCCh----H-HHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 75 EAIIENV----S-LKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 75 eav~e~~----~-~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
--.+... . ..+++|+.+.+.++|+.+++.++.+
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 7654321 1 2367778888999999999987654
No 425
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=58.90 E-value=16 Score=33.25 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..++..|+..|++|++.+++++.+...
T Consensus 18 iG~~l~~~l~~~g~~V~~~~r~~~~~~~~ 46 (251)
T PRK12826 18 IGRAIAVRLAADGAEVIVVDICGDDAAAT 46 (251)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 48899999999999999999998766544
No 426
>PRK06949 short chain dehydrogenase; Provisional
Probab=58.61 E-value=15 Score=33.74 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|++.|++|++.+++++.++...
T Consensus 21 IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 50 (258)
T PRK06949 21 LGARFAQVLAQAGAKVVLASRRVERLKELR 50 (258)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 488899999999999999999998766553
No 427
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=58.26 E-value=18 Score=32.42 Aligned_cols=61 Identities=21% Similarity=0.072 Sum_probs=39.6
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCC
Q 015610 2 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 80 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~ 80 (403)
|.-|+.-..+.||+|+.+-||++++.... .+ . -+++..++ .+...+++.+-|.||.+.-..
T Consensus 13 Gs~i~~EA~~RGHeVTAivRn~~K~~~~~-~~-~----i~q~Difd------------~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 13 GSRILKEALKRGHEVTAIVRNASKLAARQ-GV-T----ILQKDIFD------------LTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred HHHHHHHHHhCCCeeEEEEeChHhccccc-cc-e----eecccccC------------hhhhHhhhcCCceEEEeccCC
Confidence 77888899999999999999999875420 00 0 00111111 111126789999999987654
No 428
>PRK05872 short chain dehydrogenase; Provisional
Probab=58.17 E-value=13 Score=35.32 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|++.|++|++.+++++.++...
T Consensus 21 IG~~ia~~l~~~G~~V~~~~r~~~~l~~~~ 50 (296)
T PRK05872 21 IGAELARRLHARGAKLALVDLEEAELAALA 50 (296)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 488999999999999999999998766543
No 429
>PRK07041 short chain dehydrogenase; Provisional
Probab=58.11 E-value=16 Score=32.97 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=25.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..+|..|+..|++|++.+++++.++..
T Consensus 9 iG~~~a~~l~~~G~~v~~~~r~~~~~~~~ 37 (230)
T PRK07041 9 IGLALARAFAAEGARVTIASRSRDRLAAA 37 (230)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 48899999999999999999998766544
No 430
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=58.00 E-value=87 Score=29.10 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=46.3
Q ss_pred HHHHHHCCCc-eEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCChHHH
Q 015610 6 ATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLK 84 (403)
Q Consensus 6 A~~la~~G~~-V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~~~~K 84 (403)
+..+++.|.. |+.+|+|+..++.+++.++. .+ +. .++.... ... ..|+|+-.+. .+..
T Consensus 134 ~i~~~~~g~~~v~giDis~~~l~~A~~n~~~-------~~-~~--------~~~~~~~--~~~-~fD~Vvani~--~~~~ 192 (250)
T PRK00517 134 AIAAAKLGAKKVLAVDIDPQAVEAARENAEL-------NG-VE--------LNVYLPQ--GDL-KADVIVANIL--ANPL 192 (250)
T ss_pred HHHHHHcCCCeEEEEECCHHHHHHHHHHHHH-------cC-CC--------ceEEEcc--CCC-CcCEEEEcCc--HHHH
Confidence 4445556765 99999999999888654322 12 10 1111111 011 5789887653 2345
Q ss_pred HHHHHHHHhhCCCCcEEEe
Q 015610 85 QQIFADLEKYCPPHCILAS 103 (403)
Q Consensus 85 ~~~~~~l~~~~~~~~ilas 103 (403)
..++.++.+.++|+..+.-
T Consensus 193 ~~l~~~~~~~LkpgG~lil 211 (250)
T PRK00517 193 LELAPDLARLLKPGGRLIL 211 (250)
T ss_pred HHHHHHHHHhcCCCcEEEE
Confidence 5677788888888777664
No 431
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=57.94 E-value=13 Score=35.73 Aligned_cols=33 Identities=30% Similarity=0.223 Sum_probs=27.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRV 33 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i 33 (403)
+|..+|..|++.|++|++.+++++.++...+.+
T Consensus 18 IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l 50 (322)
T PRK07453 18 VGLYAAKALAKRGWHVIMACRNLKKAEAAAQEL 50 (322)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh
Confidence 488999999999999999999998876655443
No 432
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=57.83 E-value=15 Score=34.12 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEK 24 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~ 24 (403)
+|..+|..|++.|++|++.+++.+
T Consensus 20 IG~aia~~la~~G~~v~~~~~~~~ 43 (258)
T PRK07370 20 IAWGIAQQLHAAGAELGITYLPDE 43 (258)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcc
Confidence 588999999999999999876543
No 433
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=57.81 E-value=32 Score=33.10 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHCCCceEEEeC-----CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEE
Q 015610 1 MGSGIATALILSNYPVILKEV-----NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVI 74 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~-----~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVi 74 (403)
|+.++....+.-|.+|++... +++-++.+.+.. .+.| +.++.+.|. +++++||+|.
T Consensus 165 v~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a-------~~~g-----------~~i~~t~d~~eAv~gADvvy 226 (310)
T COG0078 165 VANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENA-------KESG-----------GKITLTEDPEEAVKGADVVY 226 (310)
T ss_pred HHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHH-------HhcC-----------CeEEEecCHHHHhCCCCEEE
Confidence 456777777888999998654 555555553211 1223 135677777 7999999999
Q ss_pred EecCCChHHHHHH
Q 015610 75 EAIIENVSLKQQI 87 (403)
Q Consensus 75 eav~e~~~~K~~~ 87 (403)
.=|.-.+--..+.
T Consensus 227 TDvWvSMGee~e~ 239 (310)
T COG0078 227 TDVWVSMGEEAEA 239 (310)
T ss_pred ecCcccCcchhhh
Confidence 9776655444433
No 434
>PRK08267 short chain dehydrogenase; Provisional
Probab=57.80 E-value=15 Score=34.00 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..++..|++.|++|++.+++++.++...
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 42 (260)
T PRK08267 13 IGRATALLFAAEGWRVGAYDINEAGLAALA 42 (260)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 588999999999999999999998766653
No 435
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=57.73 E-value=6.4 Score=32.25 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=30.1
Q ss_pred ccccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCCCCH
Q 015610 64 YESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 110 (403)
Q Consensus 64 ~~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntStl~~ 110 (403)
.+.+.++|+||.|+|... .+++..++ ++.++.+.++++.+..
T Consensus 61 ~~~~~~~Dvvf~a~~~~~--~~~~~~~~---~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 61 PEELSDVDVVFLALPHGA--SKELAPKL---LKAGIKVIDLSGDFRL 102 (121)
T ss_dssp GHHHTTESEEEE-SCHHH--HHHHHHHH---HHTTSEEEESSSTTTT
T ss_pred hhHhhcCCEEEecCchhH--HHHHHHHH---hhCCcEEEeCCHHHhC
Confidence 366799999999998764 45554444 5678899999888644
No 436
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=57.56 E-value=15 Score=39.80 Aligned_cols=30 Identities=27% Similarity=0.264 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|+..|++|++.|++.+.++...
T Consensus 426 IG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~ 455 (676)
T TIGR02632 426 IGRETARRLAAEGAHVVLADLNLEAAEAVA 455 (676)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence 488999999999999999999988766543
No 437
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.27 E-value=17 Score=35.36 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=31.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA 35 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~ 35 (403)
+|..+|..||..|.+|++..|+.+..+.+.+.|++
T Consensus 47 IG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~ 81 (314)
T KOG1208|consen 47 IGFETARELALRGAHVVLACRNEERGEEAKEQIQK 81 (314)
T ss_pred hHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 58889999999999999999999998888776655
No 438
>PRK06057 short chain dehydrogenase; Provisional
Probab=57.24 E-value=14 Score=34.09 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=25.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..++..|++.|++|++.+++++.++..
T Consensus 19 IG~~~a~~l~~~G~~v~~~~r~~~~~~~~ 47 (255)
T PRK06057 19 IGLATARRLAAEGATVVVGDIDPEAGKAA 47 (255)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 58899999999999999999998776544
No 439
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=57.19 E-value=12 Score=36.95 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHCCC-ceEEEeCCH
Q 015610 1 MGSGIATALILSNY-PVILKEVNE 23 (403)
Q Consensus 1 MG~~iA~~la~~G~-~V~l~d~~~ 23 (403)
+|+.+|..|+++|. +++++|.+.
T Consensus 35 lGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 35 LGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCc
Confidence 48899999999999 999999975
No 440
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.00 E-value=21 Score=36.23 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCH
Q 015610 1 MGSGIATALILSNYPVILKEVNE 23 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~ 23 (403)
+|..+|..|++.|++|+++|.+.
T Consensus 16 ~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 16 SGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCc
Confidence 37789999999999999999986
No 441
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=56.88 E-value=63 Score=30.35 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=20.9
Q ss_pred hHHHHHHHHHCCCc-eEEEeCCHHHHHHHH
Q 015610 2 GSGIATALILSNYP-VILKEVNEKFLEAGI 30 (403)
Q Consensus 2 G~~iA~~la~~G~~-V~l~d~~~~~l~~~~ 30 (403)
|...++.+...|.+ |++.|+++++++.+.
T Consensus 133 G~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~ 162 (280)
T TIGR03366 133 GLTAAAAAAAAGAARVVAADPSPDRRELAL 162 (280)
T ss_pred HHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 44555555567987 888999998877664
No 442
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=56.82 E-value=18 Score=33.49 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=25.8
Q ss_pred ChHHHHHHHHH----CCCceEEEeCCHHHHHHHHH
Q 015610 1 MGSGIATALIL----SNYPVILKEVNEKFLEAGIG 31 (403)
Q Consensus 1 MG~~iA~~la~----~G~~V~l~d~~~~~l~~~~~ 31 (403)
+|..+|..|++ .|++|++.+++++.++...+
T Consensus 12 IG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~ 46 (256)
T TIGR01500 12 FGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKA 46 (256)
T ss_pred hHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHH
Confidence 58889999987 79999999999887766543
No 443
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.71 E-value=9.9 Score=35.40 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCH
Q 015610 1 MGSGIATALILSNYPVILKEVNE 23 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~ 23 (403)
+|..+|..|++.|++|++.+++.
T Consensus 21 IG~aia~~la~~G~~v~~~~r~~ 43 (257)
T PRK08594 21 IAWGIARSLHNAGAKLVFTYAGE 43 (257)
T ss_pred HHHHHHHHHHHCCCEEEEecCcc
Confidence 58999999999999999998753
No 444
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=56.53 E-value=84 Score=29.60 Aligned_cols=98 Identities=9% Similarity=0.158 Sum_probs=55.1
Q ss_pred HHHHHHHHC-------CCceEEEeCCHHHHHHHHHHHHHHH----------HHHHHc--C--CCCHHHHHHhhcCcccc-
Q 015610 4 GIATALILS-------NYPVILKEVNEKFLEAGIGRVRANL----------QSRVKK--G--KMTQEKFEKTISLLTGV- 61 (403)
Q Consensus 4 ~iA~~la~~-------G~~V~l~d~~~~~l~~~~~~i~~~~----------~~~~~~--g--~~~~~~~~~~~~~i~~~- 61 (403)
+||..++.. +.+|+..|+|++.++.|++.+.... +++..+ | .++ +...+++++.
T Consensus 116 slA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~----~~ir~~V~F~~ 191 (264)
T smart00138 116 SLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVK----PELKERVRFAK 191 (264)
T ss_pred HHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEC----hHHhCcCEEee
Confidence 467766653 4689999999999999976442111 000000 0 000 0111233322
Q ss_pred ccc-c---ccCCCCeEEEe-cC--CChHHHHHHHHHHHhhCCCCcEEEecC
Q 015610 62 LDY-E---SFKDVDMVIEA-II--ENVSLKQQIFADLEKYCPPHCILASNT 105 (403)
Q Consensus 62 ~~~-~---~~~~aDlViea-v~--e~~~~K~~~~~~l~~~~~~~~ilasnt 105 (403)
.++ + .....|+|+-. +- =+.+.+..+++++.+.++|+..+.-..
T Consensus 192 ~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 192 HNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred ccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 122 1 13467988862 21 123567889999999999998877533
No 445
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=56.41 E-value=93 Score=28.80 Aligned_cols=76 Identities=14% Similarity=0.137 Sum_probs=46.4
Q ss_pred CCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcccc-cccc--ccCCCCeEEEecC---CChHHHH
Q 015610 12 SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYE--SFKDVDMVIEAII---ENVSLKQ 85 (403)
Q Consensus 12 ~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~--~~~~aDlVieav~---e~~~~K~ 85 (403)
.+.+|+.+|.|++.++.+++++.. .+.- .+++.. .+.. ...++|+|+-+.. -+.+-|.
T Consensus 81 ~~~~v~gvD~S~~ml~~A~~~~~~-------~~~~---------~~v~~~~~d~~~~~~~~~D~vv~~~~l~~l~~~~~~ 144 (247)
T PRK15451 81 DNCKIIAIDNSPAMIERCRRHIDA-------YKAP---------TPVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQ 144 (247)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHh-------cCCC---------CCeEEEeCChhhCCCCCCCEEehhhHHHhCCHHHHH
Confidence 467999999999999998765532 1110 012211 1221 1345787775421 1223478
Q ss_pred HHHHHHHhhCCCCcEEEe
Q 015610 86 QIFADLEKYCPPHCILAS 103 (403)
Q Consensus 86 ~~~~~l~~~~~~~~ilas 103 (403)
.+++++.+.++|+.++..
T Consensus 145 ~~l~~i~~~LkpGG~l~l 162 (247)
T PRK15451 145 ALLDKIYQGLNPGGALVL 162 (247)
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 899999999999877653
No 446
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.36 E-value=18 Score=34.11 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCH
Q 015610 1 MGSGIATALILSNYPVILKEVNE 23 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~ 23 (403)
+|..+|..|+..|++|++..++.
T Consensus 24 IG~aia~~la~~G~~V~l~~r~~ 46 (272)
T PRK08159 24 IAWGIAKACRAAGAELAFTYQGD 46 (272)
T ss_pred HHHHHHHHHHHCCCEEEEEcCch
Confidence 58899999999999999988764
No 447
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=56.10 E-value=19 Score=30.20 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHCCC-ceEEEeCCH
Q 015610 1 MGSGIATALILSNY-PVILKEVNE 23 (403)
Q Consensus 1 MG~~iA~~la~~G~-~V~l~d~~~ 23 (403)
+|+.+|.+|++.|+ +++++|.+.
T Consensus 10 lGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 10 LGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred HHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48899999999998 799999874
No 448
>PRK06914 short chain dehydrogenase; Provisional
Probab=55.84 E-value=18 Score=33.87 Aligned_cols=29 Identities=24% Similarity=0.098 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..+|..|+..|++|++++++++.++..
T Consensus 15 iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 43 (280)
T PRK06914 15 FGLLTTLELAKKGYLVIATMRNPEKQENL 43 (280)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence 58899999999999999999998876554
No 449
>PLN02253 xanthoxin dehydrogenase
Probab=55.52 E-value=16 Score=34.17 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=24.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..+|..|+..|++|++.+++++..++.
T Consensus 30 IG~~la~~l~~~G~~v~~~~~~~~~~~~~ 58 (280)
T PLN02253 30 IGESIVRLFHKHGAKVCIVDLQDDLGQNV 58 (280)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 48899999999999999999988765443
No 450
>PRK06138 short chain dehydrogenase; Provisional
Probab=55.52 E-value=18 Score=33.10 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=24.9
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..+|..|++.|++|++.+++.+.++..
T Consensus 17 iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 45 (252)
T PRK06138 17 IGRATAKLFAREGARVVVADRDAEAAERV 45 (252)
T ss_pred HHHHHHHHHHHCCCeEEEecCCHHHHHHH
Confidence 48899999999999999999998766544
No 451
>PRK07904 short chain dehydrogenase; Provisional
Probab=55.48 E-value=15 Score=34.03 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHCC-CceEEEeCCHHH-HHHHHH
Q 015610 1 MGSGIATALILSN-YPVILKEVNEKF-LEAGIG 31 (403)
Q Consensus 1 MG~~iA~~la~~G-~~V~l~d~~~~~-l~~~~~ 31 (403)
+|..+|..|++.| ++|++.+++++. ++...+
T Consensus 20 iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~ 52 (253)
T PRK07904 20 IGLAICERYLKNAPARVVLAALPDDPRRDAAVA 52 (253)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHH
Confidence 4889999999884 999999999875 555543
No 452
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=55.44 E-value=18 Score=32.67 Aligned_cols=30 Identities=30% Similarity=0.321 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..++..|++.|++|++.+++++..+...
T Consensus 17 iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~ 46 (246)
T PRK05653 17 IGRAIALRLAADGAKVVIYDSNEEAAEALA 46 (246)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhHHHHHH
Confidence 478899999999999999999987765443
No 453
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.29 E-value=18 Score=33.98 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKF 25 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~ 25 (403)
+|..+|..|++.|++|++.+++.+.
T Consensus 21 IG~aiA~~la~~Ga~V~~~~r~~~~ 45 (271)
T PRK06505 21 IAWGIAKQLAAQGAELAFTYQGEAL 45 (271)
T ss_pred HHHHHHHHHHhCCCEEEEecCchHH
Confidence 5889999999999999999987643
No 454
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=55.13 E-value=34 Score=32.57 Aligned_cols=28 Identities=25% Similarity=0.139 Sum_probs=22.9
Q ss_pred hHHHHHHHHHCCC-ceEEEeCCHHHHHHH
Q 015610 2 GSGIATALILSNY-PVILKEVNEKFLEAG 29 (403)
Q Consensus 2 G~~iA~~la~~G~-~V~l~d~~~~~l~~~ 29 (403)
+++++..|+..|. +|++++|++++.+..
T Consensus 134 arAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 134 AKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 5778888888887 599999999876554
No 455
>PRK06500 short chain dehydrogenase; Provisional
Probab=55.12 E-value=16 Score=33.24 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..++..|++.|++|++.+++++.++..
T Consensus 18 iG~~la~~l~~~g~~v~~~~r~~~~~~~~ 46 (249)
T PRK06500 18 IGLETARQFLAEGARVAITGRDPASLEAA 46 (249)
T ss_pred HHHHHHHHHHHCCCEEEEecCCHHHHHHH
Confidence 48899999999999999999998765543
No 456
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=55.04 E-value=48 Score=31.79 Aligned_cols=99 Identities=15% Similarity=0.217 Sum_probs=60.8
Q ss_pred HHHHHHHHC------CCceEEEeCCHHHHHHHHHHHHHH----------HHHHHHc------C--CCCHHHHHHhhcCcc
Q 015610 4 GIATALILS------NYPVILKEVNEKFLEAGIGRVRAN----------LQSRVKK------G--KMTQEKFEKTISLLT 59 (403)
Q Consensus 4 ~iA~~la~~------G~~V~l~d~~~~~l~~~~~~i~~~----------~~~~~~~------g--~~~~~~~~~~~~~i~ 59 (403)
+||..+... .++|+..|+|++++++|++.+... +++...+ | .+. +...++++
T Consensus 132 SlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~----~~lr~~V~ 207 (287)
T PRK10611 132 SIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVR----QELANYVD 207 (287)
T ss_pred HHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEC----hHHHccCE
Confidence 577777653 368999999999999998664332 1222211 0 121 12233343
Q ss_pred ccc-cc-c----ccCCCCeEEE--e-cCCChHHHHHHHHHHHhhCCCCcEEEecCC
Q 015610 60 GVL-DY-E----SFKDVDMVIE--A-IIENVSLKQQIFADLEKYCPPHCILASNTS 106 (403)
Q Consensus 60 ~~~-~~-~----~~~~aDlVie--a-v~e~~~~K~~~~~~l~~~~~~~~ilasntS 106 (403)
+.. ++ + ....-|+|+- . +.=+.+.++.++.++.+.++|+.++....|
T Consensus 208 F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 208 FQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred EEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 321 22 1 1356788876 2 233667899999999999999998876543
No 457
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.63 E-value=51 Score=33.38 Aligned_cols=25 Identities=16% Similarity=-0.021 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKF 25 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~ 25 (403)
+|.++|..|++.|++|++.|.+...
T Consensus 16 ~G~s~a~~l~~~G~~V~~~d~~~~~ 40 (447)
T PRK02472 16 SGYAAAKLLHKLGANVTVNDGKPFS 40 (447)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCcc
Confidence 4888999999999999999987643
No 458
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.59 E-value=23 Score=32.16 Aligned_cols=30 Identities=30% Similarity=0.234 Sum_probs=25.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
.|..++..|+..|++|++.+++++.++...
T Consensus 19 iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~ 48 (239)
T PRK07666 19 IGRAVAIALAKEGVNVGLLARTEENLKAVA 48 (239)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 378899999999999999999988765543
No 459
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=54.57 E-value=1.1e+02 Score=26.46 Aligned_cols=113 Identities=12% Similarity=0.045 Sum_probs=58.9
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccc-cccc--cccCCCCeEEEecC
Q 015610 2 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDY--ESFKDVDMVIEAII 78 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~--~~~~~aDlVieav~ 78 (403)
|..-+..|...|++|++++ ++..++.. +.+.+ +. ...+ +++.++|+||-|..
T Consensus 25 a~rka~~Ll~~ga~V~VIs--p~~~~~l~-----------~l~~i------------~~~~~~~~~~dl~~a~lViaaT~ 79 (157)
T PRK06719 25 AYRKASGLKDTGAFVTVVS--PEICKEMK-----------ELPYI------------TWKQKTFSNDDIKDAHLIYAATN 79 (157)
T ss_pred HHHHHHHHHhCCCEEEEEc--CccCHHHH-----------hccCc------------EEEecccChhcCCCceEEEECCC
Confidence 3445677788999999995 43333221 11111 11 1122 56899999998764
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCC--CCCCeEEEecCCCCCHHHHHHHHH
Q 015610 79 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTSPQVIVDLLD 156 (403)
Q Consensus 79 e~~~~K~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~--~~~~lvevv~~~~t~~e~~~~~~~ 156 (403)
|.++-..+.. .++...++- +.+. + + -..|+.|. ...+++.=|.+...+|..-..++.
T Consensus 80 -d~e~N~~i~~----~a~~~~~vn-~~d~--~----------~---~~~f~~pa~v~~~~l~iaisT~G~sP~la~~lr~ 138 (157)
T PRK06719 80 -QHAVNMMVKQ----AAHDFQWVN-VVSD--G----------T---ESSFHTPGVIRNDEYVVTISTSGKDPSFTKRLKQ 138 (157)
T ss_pred -CHHHHHHHHH----HHHHCCcEE-ECCC--C----------C---cCcEEeeeEEEECCeEEEEECCCcChHHHHHHHH
Confidence 4444443332 222233332 2211 1 1 01344443 244565556666678888777776
Q ss_pred HHHH
Q 015610 157 IGKK 160 (403)
Q Consensus 157 l~~~ 160 (403)
-++.
T Consensus 139 ~ie~ 142 (157)
T PRK06719 139 ELTS 142 (157)
T ss_pred HHHH
Confidence 5544
No 460
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=54.57 E-value=19 Score=32.85 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|++.|++|++++++.+..++..
T Consensus 15 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 44 (250)
T TIGR03206 15 IGGATCRRFAEEGAKVAVFDLNREAAEKVA 44 (250)
T ss_pred HHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 478999999999999999999987765543
No 461
>PRK05875 short chain dehydrogenase; Provisional
Probab=54.56 E-value=20 Score=33.44 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=25.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..+|..|++.|++|++++++++.++...
T Consensus 19 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 48 (276)
T PRK05875 19 IGKGVAAGLVAAGAAVMIVGRNPDKLAAAA 48 (276)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 478899999999999999999987765543
No 462
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=54.40 E-value=14 Score=27.05 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=19.5
Q ss_pred hHHHHHHHHHCCCceEEEeCCHH
Q 015610 2 GSGIATALILSNYPVILKEVNEK 24 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~ 24 (403)
|...|..|++.|++|+++|.++.
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHCCCcEEEEecCcc
Confidence 55678888999999999998764
No 463
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.10 E-value=21 Score=32.27 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=25.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..++..|++.|++|++.+++++.++..
T Consensus 17 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 17 LGYAVAYFALKEGAQVCINSRNENKLKRM 45 (238)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 47889999999999999999998876544
No 464
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=54.00 E-value=16 Score=34.97 Aligned_cols=28 Identities=11% Similarity=0.259 Sum_probs=21.1
Q ss_pred hHHHHHHHHHCCC-ceEEEeCCHHHHHHH
Q 015610 2 GSGIATALILSNY-PVILKEVNEKFLEAG 29 (403)
Q Consensus 2 G~~iA~~la~~G~-~V~l~d~~~~~l~~~ 29 (403)
+++|+..++..|. +|++++|+++..+++
T Consensus 136 arAi~~~l~~~g~~~i~i~nRt~~~~~ka 164 (288)
T PRK12749 136 STAIGAQGAIEGLKEIKLFNRRDEFFDKA 164 (288)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCccHHHHH
Confidence 5677788888886 899999997643343
No 465
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.66 E-value=13 Score=34.56 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHCCCceEEEeCCH
Q 015610 1 MGSGIATALILSNYPVILKEVNE 23 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~ 23 (403)
+|..+|..|++.|++|++.+++.
T Consensus 21 IG~a~a~~la~~G~~v~l~~r~~ 43 (256)
T PRK07889 21 IAFHVARVAQEQGAEVVLTGFGR 43 (256)
T ss_pred HHHHHHHHHHHCCCEEEEecCcc
Confidence 47889999999999999998764
No 466
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=53.57 E-value=40 Score=31.13 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=18.2
Q ss_pred ChHHHHHHHHHCCCceE-EEeC
Q 015610 1 MGSGIATALILSNYPVI-LKEV 21 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~-l~d~ 21 (403)
.|+..|..|...|.+|+ +.|.
T Consensus 42 VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 42 VGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred HHHHHHHHHHHCCCEEEEEECC
Confidence 37889999999999999 7777
No 467
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=52.97 E-value=42 Score=30.59 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=21.5
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 2 GSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
|..+++.+...|.+|++.+.+++..+.+
T Consensus 147 G~~~~~~a~~~g~~v~~~~~~~~~~~~~ 174 (271)
T cd05188 147 GLLAAQLAKAAGARVIVTDRSDEKLELA 174 (271)
T ss_pred HHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence 5566666667899999999998776554
No 468
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=52.73 E-value=19 Score=34.74 Aligned_cols=31 Identities=23% Similarity=0.140 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHCC-CceEEEeCCHHHHHHHHH
Q 015610 1 MGSGIATALILSN-YPVILKEVNEKFLEAGIG 31 (403)
Q Consensus 1 MG~~iA~~la~~G-~~V~l~d~~~~~l~~~~~ 31 (403)
+|..+|..|+..| ++|++.+++.+.+++..+
T Consensus 15 IG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~ 46 (314)
T TIGR01289 15 LGLYAAKALAATGEWHVIMACRDFLKAEQAAK 46 (314)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 5889999999999 999999999887765543
No 469
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=52.55 E-value=2.4e+02 Score=27.66 Aligned_cols=177 Identities=16% Similarity=0.186 Sum_probs=94.9
Q ss_pred CCceEEEeCCHHHHHHHHHH----HHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCCC-------
Q 015610 13 NYPVILKEVNEKFLEAGIGR----VRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIEN------- 80 (403)
Q Consensus 13 G~~V~l~d~~~~~l~~~~~~----i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e~------- 80 (403)
..+|+++|.+..++...-.. .+-.|+.-++. ..=.++-++++. .+++.+|+||-+|-..
T Consensus 26 ~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~---------crgknlffstdiekai~eadlvfisvntptkt~g~g 96 (481)
T KOG2666|consen 26 DIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQ---------CRGKNLFFSTDIEKAIKEADLVFISVNTPTKTYGLG 96 (481)
T ss_pred ceEEEEEecCchHhhcccCCCCcccCCCHHHHHHH---------hcCCceeeecchHHHhhhcceEEEEecCCcccccCC
Confidence 56999999999887543210 01111111211 111234466676 6789999999998653
Q ss_pred ------hHHHHHHHHHHHhhCCCCcEEEecCCCCCHH---HHHhhcCCCCcEEEEecC---CCCC----------CCCeE
Q 015610 81 ------VSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF---SPAH----------VMPLL 138 (403)
Q Consensus 81 ------~~~K~~~~~~l~~~~~~~~ilasntStl~~~---~la~~~~~~~r~ig~hf~---~P~~----------~~~lv 138 (403)
+.--...-+.|.+....+.|+.- -||.|+. .|-.-+.|-. -|+||- ||-. .+|--
T Consensus 97 kg~aadlky~es~ar~ia~~s~~~kivve-kstvpv~aaesi~~il~~n~--~~i~fqilsnpeflaegtaikdl~npdr 173 (481)
T KOG2666|consen 97 KGKAADLKYWESAARMIADVSVSDKIVVE-KSTVPVKAAESIEKILNHNS--KGIKFQILSNPEFLAEGTAIKDLFNPDR 173 (481)
T ss_pred CCcccchhHHHHHHHHHHHhccCCeEEEe-eccccchHHHHHHHHHhcCC--CCceeEeccChHHhcccchhhhhcCCce
Confidence 22222333457788888888875 5677764 2323333222 266663 5653 23555
Q ss_pred EEecCCCCCHHHHHHHHHHHH---Hc-CCCcEEecc--c--------chhhhhhhHHHHHHHHHHHHHc-CCCHHHHHHH
Q 015610 139 EIVRTNQTSPQVIVDLLDIGK---KI-KKTPIVVGN--C--------TGFAVNRMFFPYTQAAFLLVER-GTDLYLIDRA 203 (403)
Q Consensus 139 evv~~~~t~~e~~~~~~~l~~---~l-Gk~~v~~~d--~--------~G~i~nRi~~~~~~Ea~~l~~~-G~~~~~iD~a 203 (403)
.++.|..| |+-.+.+..+.. .+ -+.-|.+.. + ..|++.|+-. +|....+.+. |.+..++-.+
T Consensus 174 vligg~et-peg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqriss--ins~salceatgadv~eva~a 250 (481)
T KOG2666|consen 174 VLIGGRET-PEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISS--INSMSALCEATGADVSEVAYA 250 (481)
T ss_pred EEECCCCC-hhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhh--hHHHHHHHHhcCCCHHHHHHH
Confidence 57777654 566655555443 32 222233321 1 1244444421 3333344444 8888888777
Q ss_pred H
Q 015610 204 I 204 (403)
Q Consensus 204 ~ 204 (403)
+
T Consensus 251 v 251 (481)
T KOG2666|consen 251 V 251 (481)
T ss_pred h
Confidence 6
No 470
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=52.41 E-value=1.1e+02 Score=27.98 Aligned_cols=115 Identities=23% Similarity=0.212 Sum_probs=67.0
Q ss_pred HHHHHHCCCceEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccccccCCCCeEEEecCCChHHH
Q 015610 6 ATALILSNYPVILKEVNE-KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLK 84 (403)
Q Consensus 6 A~~la~~G~~V~l~d~~~-~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVieav~e~~~~K 84 (403)
|..|++.|-+|+++..+. +.+... .+.+.++- +.-.-+.+.+.++++||-|+.+ .++.
T Consensus 28 a~~ll~~ga~v~Vvs~~~~~el~~~-----------~~~~~i~~---------~~~~~~~~~~~~~~lviaAt~d-~~ln 86 (210)
T COG1648 28 ARLLLKAGADVTVVSPEFEPELKAL-----------IEEGKIKW---------IEREFDAEDLDDAFLVIAATDD-EELN 86 (210)
T ss_pred HHHHHhcCCEEEEEcCCccHHHHHH-----------HHhcCcch---------hhcccChhhhcCceEEEEeCCC-HHHH
Confidence 457888999999998766 222222 34444321 1111223556779999988765 4466
Q ss_pred HHHHHHHHhhCCCCcEEEecCCCCCHHHHHhhcCCCCcEEEEecCCCCC--CCCeEEEecCCCCCHHHHHHHHHHHHH
Q 015610 85 QQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--VMPLLEIVRTNQTSPQVIVDLLDIGKK 160 (403)
Q Consensus 85 ~~~~~~l~~~~~~~~ilasntStl~~~~la~~~~~~~r~ig~hf~~P~~--~~~lvevv~~~~t~~e~~~~~~~l~~~ 160 (403)
+.++... .+-.+++ |... .|+ -.+|+.|.. ..++..-|.+...+|-....++.-.+.
T Consensus 87 ~~i~~~a----~~~~i~v-Nv~D-----------~p~---~~~f~~Pa~~~r~~l~iaIsT~G~sP~la~~ir~~Ie~ 145 (210)
T COG1648 87 ERIAKAA----RERRILV-NVVD-----------DPE---LCDFIFPAIVDRGPLQIAISTGGKSPVLARLLREKIEA 145 (210)
T ss_pred HHHHHHH----HHhCCce-eccC-----------Ccc---cCceecceeeccCCeEEEEECCCCChHHHHHHHHHHHH
Confidence 6665543 3334554 3322 121 134555553 467777777777888887777766554
No 471
>PLN00015 protochlorophyllide reductase
Probab=52.15 E-value=20 Score=34.38 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHCC-CceEEEeCCHHHHHHHHHH
Q 015610 1 MGSGIATALILSN-YPVILKEVNEKFLEAGIGR 32 (403)
Q Consensus 1 MG~~iA~~la~~G-~~V~l~d~~~~~l~~~~~~ 32 (403)
+|..+|..|++.| ++|++.+++++.++...+.
T Consensus 9 IG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~ 41 (308)
T PLN00015 9 LGLATAKALAETGKWHVVMACRDFLKAERAAKS 41 (308)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 5889999999999 9999999998877655433
No 472
>PRK06940 short chain dehydrogenase; Provisional
Probab=52.11 E-value=20 Score=33.66 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=25.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIGRV 33 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i 33 (403)
+|..+|..|+ .|++|++.+++++.++...+.+
T Consensus 13 IG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l 44 (275)
T PRK06940 13 IGQAIARRVG-AGKKVLLADYNEENLEAAAKTL 44 (275)
T ss_pred HHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHH
Confidence 4888999986 8999999999988766554333
No 473
>PRK14968 putative methyltransferase; Provisional
Probab=52.08 E-value=78 Score=27.39 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=23.4
Q ss_pred HHHHHHHCCCceEEEeCCHHHHHHHHHHH
Q 015610 5 IATALILSNYPVILKEVNEKFLEAGIGRV 33 (403)
Q Consensus 5 iA~~la~~G~~V~l~d~~~~~l~~~~~~i 33 (403)
++..++..|.+|+.+|++++.++.+++.+
T Consensus 37 ~~~~l~~~~~~v~~~D~s~~~~~~a~~~~ 65 (188)
T PRK14968 37 VAIVAAKNGKKVVGVDINPYAVECAKCNA 65 (188)
T ss_pred HHHHHHhhcceEEEEECCHHHHHHHHHHH
Confidence 45566777999999999999998886554
No 474
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.97 E-value=37 Score=34.91 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=19.4
Q ss_pred hHHHHHHHHHCCCceEEEeCCHH
Q 015610 2 GSGIATALILSNYPVILKEVNEK 24 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~ 24 (403)
|.++|..|+..|++|+++|.+++
T Consensus 28 G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 28 GFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred HHHHHHHHHHCCCEEEEEeCCch
Confidence 66778889999999999997654
No 475
>PRK06180 short chain dehydrogenase; Provisional
Probab=51.88 E-value=17 Score=34.07 Aligned_cols=29 Identities=17% Similarity=0.086 Sum_probs=25.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..++..|++.|++|++.+++++.++..
T Consensus 16 iG~~la~~l~~~G~~V~~~~r~~~~~~~l 44 (277)
T PRK06180 16 FGRALAQAALAAGHRVVGTVRSEAARADF 44 (277)
T ss_pred HHHHHHHHHHhCcCEEEEEeCCHHHHHHH
Confidence 48899999999999999999998876543
No 476
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=51.86 E-value=22 Score=32.91 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHCCCceEEEe-CCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKE-VNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d-~~~~~l~~~~ 30 (403)
+|..+|..|++.|++|++.. ++++.++...
T Consensus 20 IG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~ 50 (260)
T PRK08416 20 IGKAIVYEFAQSGVNIAFTYNSNVEEANKIA 50 (260)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 48899999999999999875 4666555443
No 477
>PRK05993 short chain dehydrogenase; Provisional
Probab=51.84 E-value=18 Score=34.02 Aligned_cols=29 Identities=24% Similarity=0.151 Sum_probs=25.0
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..+|..|+..|++|++.+++++.++..
T Consensus 16 iG~~la~~l~~~G~~Vi~~~r~~~~~~~l 44 (277)
T PRK05993 16 IGAYCARALQSDGWRVFATCRKEEDVAAL 44 (277)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 48889999999999999999998876543
No 478
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=51.77 E-value=22 Score=26.47 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=22.0
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHHH
Q 015610 2 GSGIATALILSNYPVILKEVNEKFL 26 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~l 26 (403)
|.-+|..|+..|.+|+++++++.-+
T Consensus 11 g~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 11 GIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred HHHHHHHHHHhCcEEEEEeccchhh
Confidence 5568899999999999999998876
No 479
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.72 E-value=25 Score=32.77 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=19.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCC
Q 015610 1 MGSGIATALILSNYPVILKEVN 22 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~ 22 (403)
+|..+|..|++.|++|++.++.
T Consensus 20 IG~a~a~~l~~~G~~v~~~~~~ 41 (260)
T PRK06997 20 IAYGIAKACKREGAELAFTYVG 41 (260)
T ss_pred HHHHHHHHHHHCCCeEEEEccc
Confidence 5889999999999999998654
No 480
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=51.41 E-value=39 Score=31.72 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=44.0
Q ss_pred CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccc-ccccccc----CCCCeEEEe-cCCChHHHHHH
Q 015610 14 YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYESF----KDVDMVIEA-IIENVSLKQQI 87 (403)
Q Consensus 14 ~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~----~~aDlViea-v~e~~~~K~~~ 87 (403)
.+|+.+|++++.++.+++.+.. .|. .++++ ..+.+.+ ...|+|+.. +.....-+..+
T Consensus 103 ~~v~gvD~s~~~l~~A~~~~~~-------~g~----------~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~~ 165 (272)
T PRK11873 103 GKVIGVDMTPEMLAKARANARK-------AGY----------TNVEFRLGEIEALPVADNSVDVIISNCVINLSPDKERV 165 (272)
T ss_pred CEEEEECCCHHHHHHHHHHHHH-------cCC----------CCEEEEEcchhhCCCCCCceeEEEEcCcccCCCCHHHH
Confidence 3699999999999988754422 111 01111 1122211 257888853 33333336678
Q ss_pred HHHHHhhCCCCcEEEe
Q 015610 88 FADLEKYCPPHCILAS 103 (403)
Q Consensus 88 ~~~l~~~~~~~~ilas 103 (403)
++++.+.++|+..+..
T Consensus 166 l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 166 FKEAFRVLKPGGRFAI 181 (272)
T ss_pred HHHHHHHcCCCcEEEE
Confidence 9999999999877763
No 481
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=51.41 E-value=25 Score=32.15 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 30 (403)
+|..++..|+..|++|++.+++++..++..
T Consensus 13 lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~ 42 (255)
T TIGR01963 13 IGLAIALALAAAGANVVVNDLGEAGAEAAA 42 (255)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 478999999999999999999987765543
No 482
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=51.37 E-value=25 Score=32.17 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..+|..|+..|++|++++++++.++..
T Consensus 12 iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 40 (254)
T TIGR02415 12 IGKGIAERLAKDGFAVAVADLNEETAKET 40 (254)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 47889999999999999999997765544
No 483
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=51.32 E-value=17 Score=35.30 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=47.4
Q ss_pred HHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEEecCCCh-HHHHHH
Q 015610 10 ILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENV-SLKQQI 87 (403)
Q Consensus 10 a~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e~~-~~K~~~ 87 (403)
.--|-+|++.|+|.++++..-. + -.+++ ..+.+....+ +++..+|+||-+|--.- +-=+-+
T Consensus 188 ~glgA~Vtild~n~~rl~~ldd--------~-f~~rv--------~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLv 250 (371)
T COG0686 188 IGLGADVTILDLNIDRLRQLDD--------L-FGGRV--------HTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLV 250 (371)
T ss_pred hccCCeeEEEecCHHHHhhhhH--------h-hCcee--------EEEEcCHHHHHHHhhhccEEEEEEEecCCCCceeh
Confidence 3347899999999999876531 0 11221 0111112223 67899999999863221 112234
Q ss_pred HHHHHhhCCCCcEEEec
Q 015610 88 FADLEKYCPPHCILASN 104 (403)
Q Consensus 88 ~~~l~~~~~~~~ilasn 104 (403)
+++..+.++|+++|.+-
T Consensus 251 t~e~vk~MkpGsVivDV 267 (371)
T COG0686 251 TREMVKQMKPGSVIVDV 267 (371)
T ss_pred hHHHHHhcCCCcEEEEE
Confidence 56677789999998863
No 484
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.29 E-value=29 Score=33.35 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=26.6
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecCCC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 107 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasntSt 107 (403)
+.++.||+||-|+.-.--++. +.+++++++.+...+
T Consensus 200 ~~~~~ADIvIsAvGkp~~i~~-------~~vk~gavVIDvGin 235 (293)
T PRK14185 200 KECLEADIIIAALGQPEFVKA-------DMVKEGAVVIDVGTT 235 (293)
T ss_pred HHHhhCCEEEEccCCcCccCH-------HHcCCCCEEEEecCc
Confidence 446899999999986654443 457899999986544
No 485
>PRK08017 oxidoreductase; Provisional
Probab=51.21 E-value=19 Score=33.00 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
+|..+|..|++.|++|++.+++++.++..
T Consensus 14 IG~~la~~l~~~g~~v~~~~r~~~~~~~~ 42 (256)
T PRK08017 14 IGLEAALELKRRGYRVLAACRKPDDVARM 42 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHhHHH
Confidence 58899999999999999999998776543
No 486
>PRK05855 short chain dehydrogenase; Validated
Probab=51.05 E-value=20 Score=37.25 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAGIG 31 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~~~ 31 (403)
+|..+|..|+..|++|++.+++.+.++...+
T Consensus 327 iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~ 357 (582)
T PRK05855 327 IGRETALAFAREGAEVVASDIDEAAAERTAE 357 (582)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5889999999999999999999887766543
No 487
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.02 E-value=24 Score=31.99 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHCCCceEEE-eCCHHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILK-EVNEKFLEAGI 30 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~-d~~~~~l~~~~ 30 (403)
+|..+|..|++.|++|++. +++++.++...
T Consensus 17 iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~ 47 (247)
T PRK05565 17 IGRAIAELLAKEGAKVVIAYDINEEAAQELL 47 (247)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 5888999999999999998 99988765543
No 488
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=50.90 E-value=77 Score=30.23 Aligned_cols=81 Identities=10% Similarity=0.183 Sum_probs=49.4
Q ss_pred HHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCcccc-ccc-cc-cCCCCeEEEecCCC
Q 015610 5 IATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDY-ES-FKDVDMVIEAIIEN 80 (403)
Q Consensus 5 iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~-~~~aDlVieav~e~ 80 (403)
++..+++.|. +|+.+|.++..++.+++.+.. .+ +. .++... .+. .. -...|+|+-.+.
T Consensus 173 lai~aa~~g~~~V~avDid~~al~~a~~n~~~-------n~-~~--------~~~~~~~~~~~~~~~~~fDlVvan~~-- 234 (288)
T TIGR00406 173 LSIAALKLGAAKVVGIDIDPLAVESARKNAEL-------NQ-VS--------DRLQVKLIYLEQPIEGKADVIVANIL-- 234 (288)
T ss_pred HHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH-------cC-CC--------cceEEEecccccccCCCceEEEEecC--
Confidence 3445556665 899999999999888654432 11 11 011111 111 11 136799998765
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEe
Q 015610 81 VSLKQQIFADLEKYCPPHCILAS 103 (403)
Q Consensus 81 ~~~K~~~~~~l~~~~~~~~ilas 103 (403)
.+....++.++.+.++|+..+..
T Consensus 235 ~~~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 235 AEVIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEE
Confidence 33456778888888888877764
No 489
>PRK08309 short chain dehydrogenase; Provisional
Probab=50.46 E-value=24 Score=31.19 Aligned_cols=29 Identities=21% Similarity=0.061 Sum_probs=24.1
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
||..++..|++.|++|++.+++++..+..
T Consensus 11 ~gg~la~~L~~~G~~V~v~~R~~~~~~~l 39 (177)
T PRK08309 11 MLKRVSLWLCEKGFHVSVIARREVKLENV 39 (177)
T ss_pred HHHHHHHHHHHCcCEEEEEECCHHHHHHH
Confidence 46779999999999999999998765543
No 490
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=50.33 E-value=22 Score=33.13 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHCCCceEEEeCCH
Q 015610 1 MGSGIATALILSNYPVILKEVNE 23 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~ 23 (403)
+|..+|..|++.|++|++.+++.
T Consensus 20 IG~a~a~~l~~~G~~v~~~~~~~ 42 (261)
T PRK08690 20 IAYGIAKACREQGAELAFTYVVD 42 (261)
T ss_pred HHHHHHHHHHHCCCEEEEEcCcH
Confidence 48899999999999999987753
No 491
>PRK08177 short chain dehydrogenase; Provisional
Probab=50.32 E-value=15 Score=33.25 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEA 28 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~ 28 (403)
+|..+|..|++.|++|++++++++..+.
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~~~~~ 40 (225)
T PRK08177 13 LGLGLVDRLLERGWQVTATVRGPQQDTA 40 (225)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCcchHH
Confidence 5889999999999999999999876543
No 492
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=50.31 E-value=2.2 Score=37.37 Aligned_cols=102 Identities=11% Similarity=0.114 Sum_probs=48.3
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHH----HHHcCCCCHHHHHHhhcCccccccc-cccCCCCeEEE-
Q 015610 2 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQS----RVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIE- 75 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~----~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVie- 75 (403)
|.+-+..+..-|++|+.+|..++.+++........+.. .......+.++..+... .....+ +.++.+|+||-
T Consensus 32 g~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~~~i~~~d~vI~~ 109 (168)
T PF01262_consen 32 GQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPE--SYESNFAEFIAPADIVIGN 109 (168)
T ss_dssp HHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCC--HHHHHHHHHHHH-SEEEEH
T ss_pred HHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHH--HhHHHHHHHHhhCcEEeee
Confidence 56667777788999999999998876653210000000 00000011111111000 011122 55788999985
Q ss_pred ecCCChHHHHHHHHHHHhhCCCCcEEEecC
Q 015610 76 AIIENVSLKQQIFADLEKYCPPHCILASNT 105 (403)
Q Consensus 76 av~e~~~~K~~~~~~l~~~~~~~~ilasnt 105 (403)
+.......-+-+-++..+.++++.+|++-|
T Consensus 110 ~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 110 GLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred cccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 433332111122234455678999999753
No 493
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=50.16 E-value=1.1e+02 Score=30.67 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=25.0
Q ss_pred HHHHHHHHCCC-ceEEEeCCHHHHHHHHHHH
Q 015610 4 GIATALILSNY-PVILKEVNEKFLEAGIGRV 33 (403)
Q Consensus 4 ~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i 33 (403)
+.+.+.|.+|- +|+-+|.|..+++.+.+..
T Consensus 230 gfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~ 260 (393)
T COG1092 230 GFSVHAALGGASEVTSVDLSKRALEWARENA 260 (393)
T ss_pred HHHHHHHhcCCCceEEEeccHHHHHHHHHHH
Confidence 45667788998 9999999999999987543
No 494
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=50.07 E-value=26 Score=32.15 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=24.4
Q ss_pred hHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 015610 2 GSGIATALILSNYPVILKEVNEKFLEAG 29 (403)
Q Consensus 2 G~~iA~~la~~G~~V~l~d~~~~~l~~~ 29 (403)
|..+|..|+..|++|++.+++++.++..
T Consensus 13 G~~la~~l~~~G~~V~~~~r~~~~~~~~ 40 (248)
T PRK10538 13 GECITRRFIQQGHKVIATGRRQERLQEL 40 (248)
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 7889999999999999999998876544
No 495
>PRK07060 short chain dehydrogenase; Provisional
Probab=50.06 E-value=23 Score=32.12 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEA 28 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~ 28 (403)
+|..++..|++.|++|++++++++.++.
T Consensus 21 iG~~~a~~l~~~g~~V~~~~r~~~~~~~ 48 (245)
T PRK07060 21 IGRACAVALAQRGARVVAAARNAAALDR 48 (245)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 4788999999999999999999876554
No 496
>PRK06953 short chain dehydrogenase; Provisional
Probab=49.87 E-value=22 Score=31.99 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEA 28 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~ 28 (403)
+|+.+|..|+..|++|++.+++++.+++
T Consensus 13 iG~~la~~L~~~G~~v~~~~r~~~~~~~ 40 (222)
T PRK06953 13 IGREFVRQYRADGWRVIATARDAAALAA 40 (222)
T ss_pred hhHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 5889999999999999999999876543
No 497
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.41 E-value=32 Score=33.13 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=25.3
Q ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHhhCCCCcEEEecC
Q 015610 65 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 105 (403)
Q Consensus 65 ~~~~~aDlVieav~e~~~~K~~~~~~l~~~~~~~~ilasnt 105 (403)
+.++.||+||-|+.-.--++.+ .+++++++.+.+
T Consensus 204 ~~~~~ADIvVsAvGkp~~i~~~-------~ik~gavVIDvG 237 (297)
T PRK14168 204 RHCQRADILIVAAGVPNLVKPE-------WIKPGATVIDVG 237 (297)
T ss_pred HHHhhCCEEEEecCCcCccCHH-------HcCCCCEEEecC
Confidence 4578999999999765444443 478999998755
No 498
>PRK06182 short chain dehydrogenase; Validated
Probab=49.19 E-value=20 Score=33.45 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=24.6
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLEA 28 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~~ 28 (403)
+|..+|..|+..|++|++.+++++.++.
T Consensus 15 iG~~la~~l~~~G~~V~~~~r~~~~l~~ 42 (273)
T PRK06182 15 IGKATARRLAAQGYTVYGAARRVDKMED 42 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 5889999999999999999999887654
No 499
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=48.76 E-value=91 Score=31.05 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=49.8
Q ss_pred HHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhhcCccc-cccc----c-ccCCCCeEEEec
Q 015610 4 GIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDY----E-SFKDVDMVIEAI 77 (403)
Q Consensus 4 ~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~----~-~~~~aDlVieav 77 (403)
.++..++..|.+|+.+|.++++++.+.+..+.. | ++ ++++ ..+. . .....|+||---
T Consensus 246 ~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~-------~-~~---------~~~~~~~d~~~~~~~~~~~~D~vi~DP 308 (374)
T TIGR02085 246 GFGLHCAGPDTQLTGIEIESEAIACAQQSAQML-------G-LD---------NLSFAALDSAKFATAQMSAPELVLVNP 308 (374)
T ss_pred HHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHc-------C-CC---------cEEEEECCHHHHHHhcCCCCCEEEECC
Confidence 366777788889999999999998887544322 1 11 1111 1111 1 113479988877
Q ss_pred CCChHHHHHHHHHHHhhCCCCcEEEe
Q 015610 78 IENVSLKQQIFADLEKYCPPHCILAS 103 (403)
Q Consensus 78 ~e~~~~K~~~~~~l~~~~~~~~ilas 103 (403)
|-. .+...++..|.+. +|+.||-.
T Consensus 309 Pr~-G~~~~~l~~l~~~-~p~~ivyv 332 (374)
T TIGR02085 309 PRR-GIGKELCDYLSQM-APKFILYS 332 (374)
T ss_pred CCC-CCcHHHHHHHHhc-CCCeEEEE
Confidence 654 5667777777664 55566543
No 500
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=48.36 E-value=19 Score=35.14 Aligned_cols=27 Identities=22% Similarity=0.159 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHCCCceEEEeCCHHHHH
Q 015610 1 MGSGIATALILSNYPVILKEVNEKFLE 27 (403)
Q Consensus 1 MG~~iA~~la~~G~~V~l~d~~~~~l~ 27 (403)
+|+-|...|+.+||.|+..=|+++..+
T Consensus 18 Igswivk~LL~rGY~V~gtVR~~~~~k 44 (327)
T KOG1502|consen 18 IGSWIVKLLLSRGYTVRGTVRDPEDEK 44 (327)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCcchhh
Confidence 377888999999999999999998843
Done!