BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015611
(403 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z8I|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8I|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8J|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8J|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8K|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
pdb|2Z8K|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
Length = 366
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 188/340 (55%), Gaps = 23/340 (6%)
Query: 68 VESEHGVVAADDGHCSEIGASTLRLGGHAVDAAVATALCLGVVNPMASGIGGGAFMVLRS 127
V ++ G+VA+ D +++G L+ GG+AVDAAVA L V +P A +GGG FM++RS
Sbjct: 20 VRAKQGMVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRS 79
Query: 128 SATSQTLAFDMRETAPQAASQDMYEND-----TEAKYTGALSIGVPGEIAGLHEAWLKHG 182
T A D RE AP A++DM+ +D ++ T L+ G PG +AG A K+G
Sbjct: 80 K-NGNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYG 138
Query: 183 RLAWRALFQPAIKLAKEGFVVAPYLGQHIAN-KAEVILNDRGLRQVFAPNGKLLKSGDKC 241
+ + QPA KLA++GF+V L + +EV+ N + +F G+ LK GD
Sbjct: 139 TMPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTL 198
Query: 242 YNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDLRSYKVDVMDAMSANA 301
LA+SLE +AE GP+ Y GT+ E++ +++++ GG++T EDL +YK +S +
Sbjct: 199 VQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPISGDY 258
Query: 302 MGYTISGMPPPSSGTVGMSMILNIFDS-------YGSSDSAKGNLGLHRLIEALKHMFAV 354
GY + MPPPSSG + + ILNI ++ +GS+D+ + + EA K+ +A
Sbjct: 259 RGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADA------MQIMAEAEKYAYAD 312
Query: 355 RMT-LGDPKFVNNTNTLSEMLSPSYAEQIQLKIFDNTTFP 393
R LGDP FV + + +YA+ I +I N P
Sbjct: 313 RSEYLGDPDFVK--VPWQALTNKAYAKSIADQIDINKAKP 350
>pdb|2E0W|A Chain A, T391a Precursor Mutant Protein Of
Gamma-Glutamyltranspeptidase From Escherichia Coli
pdb|2E0W|B Chain B, T391a Precursor Mutant Protein Of
Gamma-Glutamyltranspeptidase From Escherichia Coli
Length = 556
Score = 202 bits (514), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 188/340 (55%), Gaps = 23/340 (6%)
Query: 68 VESEHGVVAADDGHCSEIGASTLRLGGHAVDAAVATALCLGVVNPMASGIGGGAFMVLRS 127
V ++ G+VA+ D +++G L+ GG+AVDAAVA L V +P A +GGG FM++RS
Sbjct: 20 VRAKQGMVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRS 79
Query: 128 SATSQTLAFDMRETAPQAASQDMYEND-----TEAKYTGALSIGVPGEIAGLHEAWLKHG 182
T A D RE AP A++DM+ +D ++ T L+ G PG +AG A K+G
Sbjct: 80 K-NGNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYG 138
Query: 183 RLAWRALFQPAIKLAKEGFVVAPYLGQHIAN-KAEVILNDRGLRQVFAPNGKLLKSGDKC 241
+ + QPA KLA++GF+V L + +EV+ N + +F G+ LK GD
Sbjct: 139 TMPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTL 198
Query: 242 YNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDLRSYKVDVMDAMSANA 301
LA+SLE +AE GP+ Y GT+ E++ +++++ GG++T EDL +YK +S +
Sbjct: 199 VQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPISGDY 258
Query: 302 MGYTISGMPPPSSGTVGMSMILNIFDS-------YGSSDSAKGNLGLHRLIEALKHMFAV 354
GY + MPPPSSG + + ILNI ++ +GS+D+ + + EA K+ +A
Sbjct: 259 RGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADA------MQIMAEAEKYAYAD 312
Query: 355 RMT-LGDPKFVNNTNTLSEMLSPSYAEQIQLKIFDNTTFP 393
R LGDP FV + + +YA+ I +I N P
Sbjct: 313 RSEYLGDPDFVK--VPWQALTNKAYAKSIADQIDINKAKP 350
>pdb|3A75|A Chain A, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
pdb|3A75|C Chain C, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
Length = 384
Score = 188 bits (478), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 119/341 (34%), Positives = 179/341 (52%), Gaps = 12/341 (3%)
Query: 63 NYGDVVESEHGVVAADDGHCSEIGASTLRLGGHAVDAAVATALCLGVVNPMASGIGGGAF 122
Y V + G+VA SEIGA L+ GG+A+DAAVA L V PM SGIGGG F
Sbjct: 19 EYKQVDVGKDGMVATAHPLASEIGADVLKKGGNAIDAAVAIQFALNVTEPMMSGIGGGGF 78
Query: 123 MVLRSSATSQTLAFDMRETAPQAASQDMYENDT------EAKYTGALSIGVPGEIAGLHE 176
M++ T T D RE AP A+ DM+ ++ + T ++GVPG + GL E
Sbjct: 79 MMVYDGKTKDTTIIDSRERAPAGATPDMFLDENGKAIPFSERVTKGTAVGVPGTLKGLEE 138
Query: 177 AWLKHGRLAWRALFQPAIKLAKEGFVVAPYLGQHIANKAEVILNDRGLRQVFAPNGKLLK 236
A K G + + L P+IKLA++GF + L + I++ E L+ + VF PNG+ LK
Sbjct: 139 ALDKWGTRSMKQLITPSIKLAEKGFPIDSVLAEAISDYQEK-LSRTAAKDVFLPNGEPLK 197
Query: 237 SGDKCYNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDLRSYKVDVMDA 296
GD +LA++ + + +G +A Y G + L V++ GG +T +DL +Y + + +
Sbjct: 198 EGDTLIQKDLAKTFKLIRSKGTDAFYKGKFAKTLSDTVQDFGGSMTEKDLENYDITIDEP 257
Query: 297 MSANAMGYTISGMPPPSSGTVGMSMILNIFDSYGSSDSAKGNLGLHRLIEALKHM-FAVR 355
+ + GY I+ PPPSSG + + +L I D + S + ++L+ H+ +A R
Sbjct: 258 IWGDYQGYQIATTPPPSSGGIFLLQMLKILDHFNLSQYDVRSWEKYQLLAETMHLSYADR 317
Query: 356 MTL-GDPKFVNNTNTLSEMLSPSY-AEQIQLKIFDNTTFPP 394
+ GDP+FVN L +L P Y E+ QL D P
Sbjct: 318 ASYAGDPEFVN--VPLKGLLHPDYIKERQQLINLDQVNKKP 356
>pdb|2V36|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
pdb|2V36|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
Length = 376
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/329 (34%), Positives = 175/329 (53%), Gaps = 11/329 (3%)
Query: 63 NYGDVVESEHGVVAADDGHCSEIGASTLRLGGHAVDAAVATALCLGVVNPMASGIGGGAF 122
Y V + G+VA SEIGA L+ GG+A+DAAVA L V PM SGIGGG F
Sbjct: 11 EYKQVDVGKDGMVATAHPLASEIGADVLKKGGNAIDAAVAIQFALNVTEPMMSGIGGGGF 70
Query: 123 MVLRSSATSQTLAFDMRETAPQAASQDMYENDT------EAKYTGALSIGVPGEIAGLHE 176
M++ T T D RE AP A+ DM+ ++ + T ++GVPG + GL E
Sbjct: 71 MMVYDGKTKDTTIIDSRERAPAGATPDMFLDENGKAIPFSERVTKGTAVGVPGTLKGLEE 130
Query: 177 AWLKHGRLAWRALFQPAIKLAKEGFVVAPYLGQHIANKAEVILNDRGLRQVFAPNGKLLK 236
A K G + + L P+IKLA++GF + L + I++ E L+ + VF PNG+ LK
Sbjct: 131 ALDKWGTRSMKQLITPSIKLAEKGFPIDSVLAEAISDYQEK-LSRTAAKDVFLPNGEPLK 189
Query: 237 SGDKCYNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDLRSYKVDVMDA 296
GD +LA++ + + +G +A Y G + L V++ GG +T +DL +Y + + +
Sbjct: 190 EGDTLIQKDLAKTFKLIRSKGTDAFYKGKFAKTLSDTVQDFGGSMTEKDLENYDITIDEP 249
Query: 297 MSANAMGYTISGMPPPSSGTVGMSMILNIFDSYGSSDSAKGNLGLHRLIEALKHM-FAVR 355
+ + GY I+ PPPSSG + + + I D + S + ++L+ H+ +A R
Sbjct: 250 IWGDYQGYQIATTPPPSSGGIFLLQMPKILDHFNLSQYDVRSWEKYQLLAETMHLSYADR 309
Query: 356 MTL-GDPKFVNNTNTLSEMLSPSYAEQIQ 383
+ GDP+FVN L +L P Y ++ Q
Sbjct: 310 ASYAGDPEFVN--VPLKGLLHPDYIKERQ 336
>pdb|2DBU|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBU|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBW|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBW|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBX|A Chain A, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DBX|C Chain C, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DG5|A Chain A, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2DG5|C Chain C, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2E0X|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0X|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0Y|A Chain A, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2E0Y|C Chain C, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
Length = 366
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/334 (35%), Positives = 179/334 (53%), Gaps = 11/334 (3%)
Query: 68 VESEHGVVAADDGHCSEIGASTLRLGGHAVDAAVATALCLGVVNPMASGIGGGAFMVLRS 127
V ++ G VA+ D +++G L+ GG+AVDAAVA L V +P A +GGG F ++RS
Sbjct: 20 VRAKQGXVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFXLIRS 79
Query: 128 SATSQTLAFDMRETAPQAASQDMYEND-----TEAKYTGALSIGVPGEIAGLHEAWLKHG 182
T A D RE AP A++D + +D ++ T L+ G PG +AG A K+G
Sbjct: 80 K-NGNTTAIDFREXAPAKATRDXFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYG 138
Query: 183 RLAWRALFQPAIKLAKEGFVVAPYLGQHIAN-KAEVILNDRGLRQVFAPNGKLLKSGDKC 241
+ QPA KLA++GF+V L + +EV+ N + +F G+ LK GD
Sbjct: 139 TXPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTL 198
Query: 242 YNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDLRSYKVDVMDAMSANA 301
LA+SLE +AE GP+ Y GT+ E++ ++ ++ GG++T EDL +YK +S +
Sbjct: 199 VQANLAKSLEXIAENGPDEFYKGTIAEQIAQEXQKNGGLITKEDLAAYKAVERTPISGDY 258
Query: 302 MGYTISGMPPPSSGTVGMSMILNIFDSYGSSDSAKGNLGLHRLI-EALKHMFAVRMT-LG 359
GY + PPPSSG + + ILNI +++ G+ ++ EA K+ +A R LG
Sbjct: 259 RGYQVYSXPPPSSGGIHIVQILNILENFDXKKYGFGSADAXQIXAEAEKYAYADRSEYLG 318
Query: 360 DPKFVNNTNTLSEMLSPSYAEQIQLKIFDNTTFP 393
DP FV + + +YA+ I +I N P
Sbjct: 319 DPDFVK--VPWQALTNKAYAKSIADQIDINKAKP 350
>pdb|2NQO|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2NQO|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
Length = 376
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 112/328 (34%), Positives = 170/328 (51%), Gaps = 29/328 (8%)
Query: 82 CSEIGASTLRLGGHAVDAAVATALCLGVVNPMASGIGGGAFMVLRSSATSQTLAFDMRET 141
SEIG L GG+A+DAAVA L VV+P A IGGG F V+ A + +A D RE
Sbjct: 44 ASEIGQKVLEEGGNAIDAAVAIGFALAVVHPAAGNIGGGGFAVIHL-ANGENVALDFREK 102
Query: 142 APQAASQDMY---ENDTEAKYT--GALSIGVPGEIAGLHEAWLKHGRLAWRALFQPAIKL 196
AP A+++M+ + + K + G L+ GVPG +AG+ K+G L PAIKL
Sbjct: 103 APLKATKNMFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEAMLKKYGTKKLSQLIDPAIKL 162
Query: 197 AKEGFVVAPYLGQHIANKAEVILNDRGLRQVFAPNGKL-LKSGDKCYNVELAQSLEALAE 255
A+ G+ ++ + + E L ++ F G L + GD +LA++L +
Sbjct: 163 AENGYAISQRQAETLKEARERFLKYSSSKKYFFKKGHLDYQEGDLFVQKDLAKTLNQIKT 222
Query: 256 QGPEALYNGTVGEKLVKDVREAGGILTIEDLRSYKVDVMDAMSANAMGYTISGMPPPSSG 315
G + Y G V E + KD+++ GGI+T EDL SY V + + GY I M PPSSG
Sbjct: 223 LGAKGFYQGQVAELIEKDMKKNGGIITKEDLASYNVKWRKPVVGSYRGYKIISMSPPSSG 282
Query: 316 TVGMSMILNIFDS-------YGSSDSAKGNLGLHRLIEALKHMFAVR-MTLGDPKFVNNT 367
+ ILN+ ++ YG+S + +H EA++ +A R + +GD FV +
Sbjct: 283 GTHLIQILNVMENADLSALGYGASKN------IHIAAEAMRQAYADRSVYMGDADFV--S 334
Query: 368 NTLSEMLSPSYAEQIQLKIFDNTTFPPD 395
+ ++++ +YA+ KIFD T PD
Sbjct: 335 VPVDKLINKAYAK----KIFD--TIQPD 356
>pdb|2QM6|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QM6|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QMC|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|2QMC|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|3FNM|A Chain A, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
pdb|3FNM|C Chain C, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
Length = 377
Score = 161 bits (408), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 112/328 (34%), Positives = 170/328 (51%), Gaps = 29/328 (8%)
Query: 82 CSEIGASTLRLGGHAVDAAVATALCLGVVNPMASGIGGGAFMVLRSSATSQTLAFDMRET 141
SEIG L GG+A+DAAVA L VV+P A IGGG F V+ A + +A D RE
Sbjct: 45 ASEIGQKVLEEGGNAIDAAVAIGFALAVVHPAAGNIGGGGFAVIHL-ANGENVALDFREK 103
Query: 142 APQAASQDMY---ENDTEAKYT--GALSIGVPGEIAGLHEAWLKHGRLAWRALFQPAIKL 196
AP A+++M+ + + K + G L+ GVPG +AG+ K+G L PAIKL
Sbjct: 104 APLKATKNMFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEAMLKKYGTKKLSQLIDPAIKL 163
Query: 197 AKEGFVVAPYLGQHIANKAEVILNDRGLRQVFAPNGKL-LKSGDKCYNVELAQSLEALAE 255
A+ G+ ++ + + E L ++ F G L + GD +LA++L +
Sbjct: 164 AENGYAISQRQAETLKEARERFLKYSSSKKYFFKKGHLDYQEGDLFVQKDLAKTLNQIKT 223
Query: 256 QGPEALYNGTVGEKLVKDVREAGGILTIEDLRSYKVDVMDAMSANAMGYTISGMPPPSSG 315
G + Y G V E + KD+++ GGI+T EDL SY V + + GY I M PPSSG
Sbjct: 224 LGAKGFYQGQVAELIEKDMKKNGGIITKEDLASYNVKWRKPVVGSYRGYKIISMSPPSSG 283
Query: 316 TVGMSMILNIFDS-------YGSSDSAKGNLGLHRLIEALKHMFAVR-MTLGDPKFVNNT 367
+ ILN+ ++ YG+S + +H EA++ +A R + +GD FV +
Sbjct: 284 GTHLIQILNVMENADLSALGYGASKN------IHIAAEAMRQAYADRSVYMGDADFV--S 335
Query: 368 NTLSEMLSPSYAEQIQLKIFDNTTFPPD 395
+ ++++ +YA+ KIFD T PD
Sbjct: 336 VPVDKLINKAYAK----KIFD--TIQPD 357
>pdb|3G9K|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3G9K|D Chain D, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3GA9|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd, Crystal Form Ii
Length = 323
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 133/287 (46%), Gaps = 30/287 (10%)
Query: 84 EIGASTLRLGGHAVDAAVATALCLGVVNPMASGIGGGAFMVLRSSATSQTLAFDMRETAP 143
E G L+ GG AVDAA+ + LGVV ASGIGGG ++ S + D RET P
Sbjct: 32 EEGXKVLKNGGSAVDAAIVVSYVLGVVELHASGIGGGGGXLIISK--DKETFIDYRETTP 89
Query: 144 QAASQDMYENDTEAKYTGALS--IGVPGEIAGLHEAWLKHGRLAWRALFQPAIKLAKEGF 201
+TG IGVPG +AG +G L L QPAI A++GF
Sbjct: 90 Y--------------FTGNQKPHIGVPGFVAGXEYIHDNYGSLPXGELLQPAINYAEKGF 135
Query: 202 VVAPYLGQHIANKAEVILNDRGLRQVFAPNGKLLKSGDKCYNVELAQSLEALAEQGPEAL 261
V L + I +D+ +F PNG+ +++G+ +LA++L+ + ++G +
Sbjct: 136 KVDDSLTXRLDLAKPRIYSDK--LSIFYPNGEPIETGETLIQTDLARTLKKIQKEGAKGF 193
Query: 262 YNGTVGEKLVKDVREAGGILTIEDLRSYKVDVMDAMSANAMGYTISGMPPPSSGTVGMSM 321
Y G V + K + +++ED++ YKV+V + N GY + PPP SG V +
Sbjct: 194 YEGGVARAISKTAK-----ISLEDIKGYKVEVRKPVKGNYXGYDVYTAPPPFSG-VTLLQ 247
Query: 322 ILNIFDS---YGSSDSAKGNLGLHRLIEALKHMFAVRMTLGDPKFVN 365
L + + Y D I + + + LGDP +VN
Sbjct: 248 XLKLAEKKEVYKDVDHTATYXSKXEEISRIAYQ-DRKKNLGDPNYVN 293
>pdb|2NLZ|A Chain A, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|B Chain B, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|C Chain C, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|D Chain D, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
Length = 547
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 163/345 (47%), Gaps = 30/345 (8%)
Query: 66 DVVESEHGVVAADDGHCSEIGASTLRLGGHAVDAAVATALCLGVVNPMASGIGGGAFMVL 125
+VV +++G+VA ++ G L+ GG+A+DAA+ATA L V+ P ++GIG AF ++
Sbjct: 17 NVVYAKNGMVATSQPLAAQAGLDILKAGGNAIDAAIATATALTVLEPTSNGIGSDAFALV 76
Query: 126 RSSATSQTLAFDMRETAP-----QAASQDMYENDTEAKYTGALSIGVPGEIAGLHEAWLK 180
+ L R AP +A YE E G + + VPG E
Sbjct: 77 WTKGKLHGLNGSGR--APMSLTMEAVKAKGYEQ--ELPPYGVIPVTVPGAPGAWAELAKM 132
Query: 181 HGRLAWRALFQPAIKLAKEGFVVAPYLGQHIA---NKAEVILND---RGLRQVFAPNGKL 234
+G L A PAI+ A+EG+ V P L ++ ++ + D + FAP G+
Sbjct: 133 YGNLPLAASLAPAIRYAEEGYPVTPTLAKYWKAAYDRVKTEWTDDVYQPWFDTFAPKGRA 192
Query: 235 LKSGDKCYNVELAQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDLRSYKVDVM 294
+ G+ + A +L ++AE E+ Y G + +++ + GG LT EDL Y+ + +
Sbjct: 193 PRVGEVWRSQGHADTLRSIAESNGESFYRGELADQIHAFFDKHGGYLTKEDLACYRPEWV 252
Query: 295 DAMSANAMGYTISGMPPPSSGTVGMSM--ILNIFDSYGSSDSAKGNLGLHRLIEALKHMF 352
+ +S + GY + +PP G V + I+ F+ Y D+ H+ IEA+K F
Sbjct: 253 EPISIDYRGYRVWEIPPNGQGLVALEALNIVKGFEFY-HKDTVD---TYHKQIEAMKLAF 308
Query: 353 AVRMTLGDPKFVNNTNTLS----EMLSPSYAEQIQLKIFDNTTFP 393
M K+V + +S ++LS YA + + +I + P
Sbjct: 309 VDGM-----KYVTEPSDMSVSVEQLLSDEYATERRKEIGEQALTP 348
>pdb|2I3O|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
Length = 516
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 128/299 (42%), Gaps = 5/299 (1%)
Query: 70 SEHGVVAADDGHCSEIGASTLRLGGHAVDAAVATALCLGVVNPMASGIGGGAFMVLRSSA 129
S+ V+A+ S G L+ GG+ DAA+A + L V G+GG F ++R
Sbjct: 10 SQRSVIASSSELASLAGRDILKRGGNIFDAALAVSAXLCVTQNNLCGLGGDLFALIRDE- 68
Query: 130 TSQTLAFDMRETAPQAASQDMYEND--TEAKYTGALS-IGVPGEIAGLHEAWLKHGRLAW 186
Q + A +A S D YE+ T+ G + I VPG E + K
Sbjct: 69 NGQIXDLNGSGQASRAVSIDYYESXGLTKIPERGPYAAITVPGIAGSWDEIFRKFATXDI 128
Query: 187 RALFQPAIKLAKEGFVVAPYLGQHIANKAEVILNDRGLRQVFAPNGKLLKSGDKCYNVEL 246
+ +PAI+ A GF + IA A VI RG +F PNG + +G+ +L
Sbjct: 129 ADILEPAIRTASAGFPITQNYSDSIARSAPVIGQYRGWSSIFXPNGSVPVAGEILKQPDL 188
Query: 247 AQSLEALAEQGPEALYNGTVGEKLVKDVREAGGILTIEDLRSYKVDVMDAMSANAMGYTI 306
A+S +E+G + Y+G++ + ++ + G L+ DLR Y+ + + + + I
Sbjct: 189 AESFRLXSEEGFRSFYDGSLADIIIAGLEGTGSPLSDRDLRVYRPLIGKPVFTDLDEFRI 248
Query: 307 SGMPPPSSGTVGMSMILNIFDSYGSSDSAKGNLGLHRLIEALKHMFAVRMTLGDPKFVN 365
P S G + I +S+G + + E + + R + DP + N
Sbjct: 249 YETSPNSQGITVIEWIRGX-ESHGYDSRTXWEAKIEDIFETXEEAYDKRRKITDPSYXN 306
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 139 RETAPQAASQDMYENDTEAKYTGALSIGVPGEIAGLHEAWLKHGRLAWRALFQPAIKLAK 198
RET +A Q + END EA G P IAG+H R ++ ++
Sbjct: 765 RETXDRANRQ-INENDAEAXNKIFKIEGTPRRIAGIH------SRRKFKNTYE------- 810
Query: 199 EGFVVAPYLGQHIANKAEVILNDRGLRQVFAPNGKLLKSGDK 240
+ + LG++I K+E + + + P G+L++S K
Sbjct: 811 --YECSFLLGENIGXKSERWVPXXSVDNAWIPRGELVESHSK 850
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 139 RETAPQAASQDMYENDTEAKYTGALSIGVPGEIAGLHEAWLKHGRLAWRALFQPAIKLAK 198
RET +A Q + END EA G P IAG+H R ++ ++
Sbjct: 771 RETXDRANRQ-INENDAEAXNKIFKIEGTPRRIAGIH------SRRKFKNTYE------- 816
Query: 199 EGFVVAPYLGQHIANKAEVILNDRGLRQVFAPNGKLLKSGDK 240
+ + LG++I K+E + + + P G+L++S K
Sbjct: 817 --YECSFLLGENIGXKSERWVPXXSVDNAWIPRGELVESHSK 856
>pdb|3ZEF|B Chain B, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
pdb|3ZEF|E Chain E, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
Length = 1531
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 262 YNGTVGEKLVKDVREAGGILTIEDLRSY-KVDVMDAMSANAMGYTISGMPPPSSGTVGMS 320
+ G + K+ DV+ G D+ Y + +D + N +S P P+ +G+
Sbjct: 842 FKGLITNKMWFDVQLRYGDYDSHDISRYVRAKFLDYTTDN-----VSMYPSPTGVMIGID 896
Query: 321 MILNIFDSYGSSDSA-------------KGNLGLHRLIEALKHMFAVRMTLGDPKFVNNT 367
+ N++D+YG+ + K N L+ L E ++ + + F+N++
Sbjct: 897 LAYNMYDAYGNWFNGLKPLIQNSMRTIMKANPALYVLRERIRKGLQIYQSSVQEPFLNSS 956
Query: 368 N 368
N
Sbjct: 957 N 957
>pdb|4I43|B Chain B, Crystal Structure Of Prp8:aar2 Complex
Length = 1564
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 262 YNGTVGEKLVKDVREAGGILTIEDLRSY-KVDVMDAMSANAMGYTISGMPPPSSGTVGMS 320
+ G + K+ DV+ G D+ Y + +D + N +S P P+ +G+
Sbjct: 875 FKGLITNKMWFDVQLRYGDYDSHDISRYVRAKFLDYTTDN-----VSMYPSPTGVMIGID 929
Query: 321 MILNIFDSYGSSDSA-------------KGNLGLHRLIEALKHMFAVRMTLGDPKFVNNT 367
+ N++D+YG+ + K N L+ L E ++ + + F+N++
Sbjct: 930 LAYNMYDAYGNWFNGLKPLIQNSMRTIMKANPALYVLRERIRKGLQIYQSSVQEPFLNSS 989
Query: 368 N 368
N
Sbjct: 990 N 990
>pdb|3SZA|A Chain A, Crystal Structure Of Human Aldh3a1 - Apo Form
pdb|3SZA|B Chain B, Crystal Structure Of Human Aldh3a1 - Apo Form
pdb|3SZB|A Chain A, Crystal Structure Of Human Aldh3a1 Modified With The
Beta-Elimination Product Of Aldi-1; 1-Phenyl-
2-Propen-1-One
pdb|3SZB|B Chain B, Crystal Structure Of Human Aldh3a1 Modified With The
Beta-Elimination Product Of Aldi-1; 1-Phenyl-
2-Propen-1-One
Length = 469
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 110 VNPMASGIGGGAFMVLRSSATSQTLAFDMRETAPQAASQDMY 151
+ PM I G +VL+ S S+ +A + PQ +D+Y
Sbjct: 138 IQPMVGAIAAGNAVVLKPSELSENMASLLATIIPQYLDKDLY 179
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain
pdb|2ZZG|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
pdb|2ZZG|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
Length = 752
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 111 NPMASGIGGG-AFMVLRSSATSQTLAFDMRETAPQAASQDMYENDTEAKYTGALSIGVPG 169
NP A G G AF VL TL F + AP+ A QD KY + V
Sbjct: 190 NPWAGGGNAGPAFEVLYRGLEVATLVFMQYKKAPENAPQDQVVVIKGEKYI-PMETKVVD 248
Query: 170 EIAGLHEAWLKHGRLAWRALFQPAIKLAKEGFVVAP 205
GL RL W + P A G+VV P
Sbjct: 249 TGYGLE-------RLVWMSQGTPTAYDAVLGYVVEP 277
>pdb|2CW7|A Chain A, Crystal Structure Of Intein Homing Endonuclease Ii
Length = 537
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 16/70 (22%)
Query: 251 EALAEQGPEALYNGTVGEKLVK--DVREAGGILTIEDLRSYKVDVM-----------DAM 297
EAL E YNG E LV+ +R+A GI+ +++L+ +K+ + D
Sbjct: 221 EALVEN---VRYNGNKREYLVEFNSIRDAVGIMPLKELKEWKIGTLNGFRMRKLIEVDES 277
Query: 298 SANAMGYTIS 307
A +GY +S
Sbjct: 278 LAKLLGYYVS 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,814,637
Number of Sequences: 62578
Number of extensions: 481638
Number of successful extensions: 1281
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1241
Number of HSP's gapped (non-prelim): 23
length of query: 403
length of database: 14,973,337
effective HSP length: 101
effective length of query: 302
effective length of database: 8,652,959
effective search space: 2613193618
effective search space used: 2613193618
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)