Query 015612
Match_columns 403
No_of_seqs 122 out of 286
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 15:38:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v0p_A TAP42, type 2A phosphat 100.0 6.7E-49 2.3E-53 372.4 20.9 195 9-221 2-233 (234)
2 3qc1_A Immunoglobulin-binding 100.0 5.4E-49 1.9E-53 373.8 18.9 193 7-220 29-242 (243)
3 3ka5_A Ribosome-associated pro 22.3 57 0.0019 24.1 2.7 16 319-335 8-23 (65)
4 3k2t_A LMO2511 protein; lister 21.5 51 0.0018 23.6 2.2 12 319-330 8-19 (57)
5 3lyv_A Ribosome-associated fac 15.1 69 0.0024 23.6 1.7 12 319-330 9-20 (66)
6 1vcs_A Vesicle transport throu 15.0 4.3E+02 0.015 20.6 6.6 59 87-153 33-93 (102)
7 1d7m_A Cortexillin I; coiled-c 10.3 6E+02 0.021 19.8 6.6 41 139-208 23-63 (101)
8 2dbo_A D-tyrosyl-tRNA(Tyr) dea 10.3 95 0.0032 26.6 1.3 69 42-112 42-118 (148)
9 4ham_A LMO2241 protein; struct 10.2 93 0.0032 25.3 1.2 19 306-324 23-41 (134)
10 1gup_A Galactose-1-phosphate u 9.6 1.7E+02 0.0058 28.1 3.1 17 314-330 110-128 (348)
No 1
>2v0p_A TAP42, type 2A phosphatase-associated protein 42; phosphorylation, signal transduction inhibitor, hydrolase in; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-49 Score=372.40 Aligned_cols=195 Identities=24% Similarity=0.296 Sum_probs=165.6
Q ss_pred CCHHHHHHHHHHHhh-h------hccCCCchHHHHHHHH-HHHHHHHHhhhhcCCCCCCCCccccccchhhhhHHHHhhh
Q 015612 9 LPLPSLFERGRKIHQ-I------ATESGCDPDAVRKGCE-VLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGE 80 (403)
Q Consensus 9 ~sL~~lf~~~~~~~~-~------~~~s~~~q~~v~~~i~-~l~~~~~~v~~l~lFS~NE~leDIsT~~L~yLllpy~lg~ 80 (403)
.||+++|..|+++|. . +.+|+.||++|+++|. .|+.|+.+|+++||||+||++|||+|++|+||+||||||.
T Consensus 2 ~~L~~lF~~a~~~~~~~le~~~~~~~s~~~Q~~v~~~i~~~le~~~~~v~~l~LFS~NE~leDIsT~~L~yLlvpy~Lg~ 81 (234)
T 2v0p_A 2 ASVTEQFNDIISLYSTKLEHTSLRQDSPEYQGLLLSTIKKLLNLKTAIFDRLALFSTNETIDDVSTASIKFLAVDYYLGL 81 (234)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCSSCTTCHHHHHHHHHHHHHHHHHHHHHHTTSCC-----CGGGSCGGGGGGGGHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCcccccccchHHHhHHHHHHH
Confidence 589999999999887 3 4577889999999999 9999999999999999999999999999999999999999
Q ss_pred hhccccc---------hhHHHHHHHHHHHHH-HHHHHHhccCCChhHHHHHhhc-------------------CCcchHH
Q 015612 81 LIEKIAQ---------DDRLQILKASQAKLK-FISFCEIMELVPEEELEAVAQA-------------------KPTAFTD 131 (403)
Q Consensus 81 L~~k~~~---------~~R~~~L~~a~~~~~-FL~~l~~Y~ll~~~~~~~~~~~-------------------~~~~~a~ 131 (403)
|++++.. .+|+.+|+.|+.||. ||++|++|||+++++...+... .+.+|+.
T Consensus 82 L~~k~~~~~~~~~~~~~~R~~~L~~A~~~~~~FL~~l~~y~ll~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~ 161 (234)
T 2v0p_A 82 LISRRQSNDSDVAQRQSMKLIYLKKSVESFINFLTLLQDYKLLDPLVGEKLGNFKDRYNPQLSELYAQPKNNKDLSGAQL 161 (234)
T ss_dssp HHTTCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHTCSSTTSCCHHHHSCCCSSTTCHHHHHH
T ss_pred HHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhhccccchhhhhccccccccccccHHH
Confidence 9999865 789999999999999 9999999999999887665431 1358999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCcccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015612 132 QRARKIARFKRQRAAESKLQEIKERKERRGRSTRAAAPSAPVEAGEEDVLDDDGEEEREAWLTTISLAVCKALDLLEMLK 211 (403)
Q Consensus 132 ~R~~KI~rfK~eKel~~kL~~L~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~DEE~~Re~~l~~L~l~~~~a~~~L~si~ 211 (403)
+|+.||+|||++|+|+++|+.|+.+ ++++.+ +++|||.+|++||++|++|+++|+++|+||.
T Consensus 162 ~R~~KI~rfK~eKel~~kL~~L~~~----------------~~~~~~--D~~deE~~Re~~l~~L~~~~~~s~~~Lesi~ 223 (234)
T 2v0p_A 162 KRKEKIELFQRNKEISTKLHCLELE----------------LKNNDE--DHDHDELLRELYLMRLHHFSLDTINNIEQNL 223 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------------C------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------Hhcccc--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999874 233322 2457899999999999999999999999999
Q ss_pred HHHHHHHHhH
Q 015612 212 KEEDMLSAVK 221 (403)
Q Consensus 212 ~El~iL~~~~ 221 (403)
+|++||++++
T Consensus 224 ~ElemL~~~~ 233 (234)
T 2v0p_A 224 FECEMLSNFL 233 (234)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcc
Confidence 9999999874
No 2
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A {Mus musculus}
Probab=100.00 E-value=5.4e-49 Score=373.77 Aligned_cols=193 Identities=30% Similarity=0.457 Sum_probs=165.0
Q ss_pred CCCCHHHHHHHHHHHhhh------hccCCCchHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccccccchhhhhHHHHhhh
Q 015612 7 EELPLPSLFERGRKIHQI------ATESGCDPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGE 80 (403)
Q Consensus 7 ~~~sL~~lf~~~~~~~~~------~~~s~~~q~~v~~~i~~l~~~~~~v~~l~lFS~NE~leDIsT~~L~yLllpy~lg~ 80 (403)
.+.+|+++|..|+++|.. |++|+.||++|+++|..|+.|+.+|++++|||+||+||||+|++|+||+||||||.
T Consensus 29 ~~~~L~~lF~~a~~~~~~le~~~~~~~S~~~Q~~v~~~i~~le~~~~~v~~l~LFS~NE~leDIsT~~LkyLlvpy~Lg~ 108 (243)
T 3qc1_A 29 LLPRLPELFETSKKLLEDVEVATEPTGSRTIQDKVSKGLELLEKAAGMLSQLDLFSRNEDLEEIASTDLKYLMVPALQGA 108 (243)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHHHHHHHHHHTTTCSSSCSTTSCTTTGGGGGHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccccccccchHhhHHHHHHH
Confidence 456999999999998863 56888899999999999999999999999999999999999999999999999999
Q ss_pred hhccccch-hHHHHHHHHHHHHH-HHHHHHhccCCChh----HHHHHhh----c-----CCcchHHHHHHHHHHHHHHHH
Q 015612 81 LIEKIAQD-DRLQILKASQAKLK-FISFCEIMELVPEE----ELEAVAQ----A-----KPTAFTDQRARKIARFKRQRA 145 (403)
Q Consensus 81 L~~k~~~~-~R~~~L~~a~~~~~-FL~~l~~Y~ll~~~----~~~~~~~----~-----~~~~~a~~R~~KI~rfK~eKe 145 (403)
|++|+... .|+.+|+.|+.||. ||++|++|||++++ ....... . .+.+|+.+|+.||+|||++||
T Consensus 109 L~~k~~~~~~Rl~~L~~A~~~~~~FL~~l~~Y~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~rR~~KI~rfK~eKe 188 (243)
T 3qc1_A 109 LTMKQVNPSKRLDHLQRAREHFVHFLTQCHCYHVAEFQLPQTKTNSAENNTASSSMAYPNLVAMASQRQAKIERYKQKKE 188 (243)
T ss_dssp HHTTCCCGGGHHHHHHHHHHHHHHHHTTCCCCC-----------------------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcccchhhhcccccccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 99998655 59999999999999 99999999999652 1111111 0 134899999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCCCcccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015612 146 AESKLQEIKERKERRGRSTRAAAPSAPVEAGEEDVLDDDGEEEREAWLTTISLAVCKALDLLEMLKKEEDMLSAV 220 (403)
Q Consensus 146 l~~kL~~L~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~DEE~~Re~~l~~L~l~~~~a~~~L~si~~El~iL~~~ 220 (403)
|+++|+.|++..+ + +++|||.+|++||++|++|+++|+++|+||.+|++||+++
T Consensus 189 Le~kL~~L~~~~e----------------~-----~~~DeE~~Re~yL~~L~l~~~~s~~~Lesi~~EleiL~~r 242 (243)
T 3qc1_A 189 VEHRLSALKSAVE----------------S-----GQADDERVREYHLLHLRRWIAVSLEELESIDQEIKILKEK 242 (243)
T ss_dssp HHHHHHHHHHHHH----------------H-----TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHh----------------c-----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999987532 2 2359999999999999999999999999999999999865
No 3
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=22.30 E-value=57 Score=24.05 Aligned_cols=16 Identities=50% Similarity=0.441 Sum_probs=11.7
Q ss_pred CCCCcccHHHHHHHHHH
Q 015612 319 HRLPTMSIEEAGLKEME 335 (403)
Q Consensus 319 h~LPTMTvdE~~~~E~e 335 (403)
+.+|+|||||.. .+|+
T Consensus 8 ~~~kpMsveEAv-~qme 23 (65)
T 3ka5_A 8 FAIKPMSEEEAV-LEME 23 (65)
T ss_dssp SCCSCBCHHHHH-HHHH
T ss_pred ecCCCCCHHHHH-HHHH
Confidence 378999999983 3443
No 4
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=21.53 E-value=51 Score=23.56 Aligned_cols=12 Identities=42% Similarity=0.349 Sum_probs=8.1
Q ss_pred CCCCcccHHHHH
Q 015612 319 HRLPTMSIEEAG 330 (403)
Q Consensus 319 h~LPTMTvdE~~ 330 (403)
+.+|+|||||..
T Consensus 8 ~~~kpmsveEAv 19 (57)
T 3k2t_A 8 FSLKPMDSEEAV 19 (57)
T ss_dssp ---CCBCHHHHH
T ss_pred ccCCCCCHHHHH
Confidence 379999999983
No 5
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=15.12 E-value=69 Score=23.64 Aligned_cols=12 Identities=42% Similarity=0.495 Sum_probs=10.2
Q ss_pred CCCCcccHHHHH
Q 015612 319 HRLPTMSIEEAG 330 (403)
Q Consensus 319 h~LPTMTvdE~~ 330 (403)
+.+|+|||||..
T Consensus 9 ~~~kpMsveEAv 20 (66)
T 3lyv_A 9 VTLKPMDVEEAR 20 (66)
T ss_dssp CCCCEECHHHHH
T ss_pred ccCCCCCHHHHH
Confidence 379999999983
No 6
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=14.96 E-value=4.3e+02 Score=20.60 Aligned_cols=59 Identities=17% Similarity=0.324 Sum_probs=35.0
Q ss_pred chhHHHHHHHHHHHHH-HHHHHHhccCCChhHHHHHhhcCCcchHHHHHHHHHHHHHH-HHHHHHHHHH
Q 015612 87 QDDRLQILKASQAKLK-FISFCEIMELVPEEELEAVAQAKPTAFTDQRARKIARFKRQ-RAAESKLQEI 153 (403)
Q Consensus 87 ~~~R~~~L~~a~~~~~-FL~~l~~Y~ll~~~~~~~~~~~~~~~~a~~R~~KI~rfK~e-Kel~~kL~~L 153 (403)
...|...|..++..+. =-..+.++++ + .+..+.+.-..=+.||..||.+ ..|+..+..+
T Consensus 33 geerk~~i~~ie~~l~EA~ell~qMel------E--~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~ 93 (102)
T 1vcs_A 33 PDEKKQMVANVEKQLEEARELLEQMDL------E--VREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS 93 (102)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHH------H--HTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH------H--HHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888988888888 7777777664 0 0111111112236899999986 3344444433
No 7
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=10.32 E-value=6e+02 Score=19.75 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCcccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 015612 139 RFKRQRAAESKLQEIKERKERRGRSTRAAAPSAPVEAGEEDVLDDDGEEEREAWLTTISLAVCKALDLLE 208 (403)
Q Consensus 139 rfK~eKel~~kL~~L~~~~~~~~r~~~~~~~~~~~e~~~~~~~~~DEE~~Re~~l~~L~l~~~~a~~~L~ 208 (403)
-.|++++|+.-|..|+. +-..|+..|.-|+.-+-.++-.|+
T Consensus 23 L~kQk~eL~~~l~~l~~-----------------------------e~~~R~~~i~el~akidd~Lk~l~ 63 (101)
T 1d7m_A 23 LIKQKDQLNSLLASLES-----------------------------EGAEREKRLRELEAKLDETLKNLE 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHccc
Confidence 35788899999888885 235788888888888877776665
No 8
>2dbo_A D-tyrosyl-tRNA(Tyr) deacylase; D-amino acid, D-tyrosine, structural genomi NPPSFA, national project on protein structural and function analyses; 2.76A {Aquifex aeolicus}
Probab=10.31 E-value=95 Score=26.59 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=39.9
Q ss_pred HHHHHHHhhhhcCCCCCCCCccccccch--hhhhHHHHhhhhhccccchhHHHHH-----HHHHHHHH-HHHHHHhccC
Q 015612 42 LEKCEDMVGKLGLFSSNETKDDISTANL--KYILVPYFLGELIEKIAQDDRLQIL-----KASQAKLK-FISFCEIMEL 112 (403)
Q Consensus 42 l~~~~~~v~~l~lFS~NE~leDIsT~~L--~yLllpy~lg~L~~k~~~~~R~~~L-----~~a~~~~~-FL~~l~~Y~l 112 (403)
...+..-|-.|-||++.+.-=..|-.++ ..|+|+= -.|+......+|..+- +.|+.+|. |+..|+..++
T Consensus 42 ~~~l~~Kil~lRif~De~gkmn~Sv~d~~g~iL~VSQ--FTL~ad~~KG~RPsF~~Aa~p~~A~~LY~~f~~~l~~~g~ 118 (148)
T 2dbo_A 42 IEKLVNKILNLRIFEDERGKFQYSVLDIKGEILVVSQ--FTLYANVKKGRRPSFEEAEEPKRAKELYEKFVDKIKESGL 118 (148)
T ss_dssp HHHHHHHHHHCCCBCCSSCSSCBCTTTTTCEEEEEEC--GGGGCBCSSSSSCBCTTBCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhcEEeccCCCCCcccCHHHcCCCEEEEEe--eecccccCCCCCCCccccCCHHHHHHHHHHHHHHHHhcCC
Confidence 3445666777999997443222333232 3455553 3455443222333322 57889999 9999998764
No 9
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=10.18 E-value=93 Score=25.31 Aligned_cols=19 Identities=16% Similarity=0.301 Sum_probs=17.3
Q ss_pred HHHHHHhhcCCCCCCCCcc
Q 015612 306 ERERMAAQVFQPMHRLPTM 324 (403)
Q Consensus 306 ~R~~lq~~VFgpGh~LPTM 324 (403)
-|+.+..+.|.||..||+-
T Consensus 23 i~~~I~~G~l~pG~~LPse 41 (134)
T 4ham_A 23 IKEQVVKGVLQEGEKILSI 41 (134)
T ss_dssp HHHHHHHTSSCTTCEECCH
T ss_pred HHHHHHcCCCCCCCCCccH
Confidence 4999999999999999974
No 10
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=9.61 E-value=1.7e+02 Score=28.08 Aligned_cols=17 Identities=35% Similarity=0.684 Sum_probs=15.1
Q ss_pred cCCCCC--CCCcccHHHHH
Q 015612 314 VFQPMH--RLPTMSIEEAG 330 (403)
Q Consensus 314 VFgpGh--~LPTMTvdE~~ 330 (403)
||.|.| +|++||+++..
T Consensus 110 i~sp~H~~~l~~l~~~~~~ 128 (348)
T 1gup_A 110 CFSPDHSKTLPELSVAALT 128 (348)
T ss_dssp ESCSCTTCCGGGSCHHHHH
T ss_pred EcCCcccCChhhCCHHHHH
Confidence 799999 78999999883
Done!