Query 015612
Match_columns 403
No_of_seqs 122 out of 286
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 15:38:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015612.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015612hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1skye1 a.69.1.1 (E:357-470) F 23.8 20 0.0015 27.5 2.5 48 31-85 10-67 (114)
2 d2jdid1 a.69.1.1 (D:358-475) F 20.9 26 0.0019 27.0 2.5 48 31-85 13-70 (118)
3 d3bwga1 a.4.5.6 (A:5-82) Trans 19.3 25 0.0018 24.4 2.1 19 306-324 7-25 (78)
4 d1fx0b1 a.69.1.1 (B:378-485) F 17.5 32 0.0023 26.0 2.4 48 31-85 10-67 (108)
5 d1z84a1 d.13.1.2 (A:23-195) Ga 13.9 62 0.0045 26.0 3.5 17 314-330 106-124 (173)
6 d3deoa1 b.34.13.2 (A:85-128) C 12.3 27 0.002 21.9 0.5 9 384-392 20-28 (44)
7 d2h5na1 a.287.1.2 (A:1-132) Hy 10.8 40 0.0029 24.9 1.1 10 320-329 117-126 (132)
8 d2ahob1 a.60.14.1 (B:85-175) E 10.1 1.5E+02 0.011 20.9 4.3 25 131-155 4-28 (91)
9 d1hw1a1 a.4.5.6 (A:5-78) Fatty 9.9 60 0.0043 22.2 1.8 18 307-324 13-30 (74)
10 d1soxa2 d.120.1.1 (A:3-93) Sul 9.5 45 0.0033 23.8 1.0 10 320-329 1-10 (91)
No 1
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=23.84 E-value=20 Score=27.48 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=39.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccccccc----------hhhhhHHHHhhhhhccc
Q 015612 31 DPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTAN----------LKYILVPYFLGELIEKI 85 (403)
Q Consensus 31 ~q~~v~~~i~~l~~~~~~v~~l~lFS~NE~leDIsT~~----------L~yLllpy~lg~L~~k~ 85 (403)
....|++.|..|+.++.+|.-|| +||+|..| -+||.=|||.|+...-.
T Consensus 10 ~a~~v~~~LqrYkeLqDIIaiLG-------~dELSeeDk~~V~RARklqrFLsQpF~vaE~fTG~ 67 (114)
T d1skye1 10 VARKVQQTLERYKELQDIIAILG-------MDELSDEDKLVVHRARRIQFFLSQNFHVAEQFTGQ 67 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-------STTCTTHHHHHHHHHHHHHHHTCBCCTTTHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-------chhcCHHHHHHHHHHHHHHHHhcCCceeceeecCC
Confidence 35678899999999999999998 57888776 36888899988876554
No 2
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.92 E-value=26 Score=27.04 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=40.2
Q ss_pred chHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccccccc----------hhhhhHHHHhhhhhccc
Q 015612 31 DPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTAN----------LKYILVPYFLGELIEKI 85 (403)
Q Consensus 31 ~q~~v~~~i~~l~~~~~~v~~l~lFS~NE~leDIsT~~----------L~yLllpy~lg~L~~k~ 85 (403)
+...|.+.|..|+..+.+|.-|| +||+|-+| -+||.=|||.|+...-.
T Consensus 13 ~a~~V~~~LqrYkeLqdIIaiLG-------~dELSeeDk~~V~RARklqrfLsQpFfvae~fTg~ 70 (118)
T d2jdid1 13 VARGVQKILQDYKSLQDIIAILG-------MDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGH 70 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-------GGGSCHHHHHHHHHHHHHHHHHCCCCGGGHHHHSS
T ss_pred HHHHHHHHHHHhHHHHHHHHHcC-------hhhcCHHHhHHHHHHHHHHHHhcCcceeeeeecCC
Confidence 35678899999999999999998 68888776 47899999999987654
No 3
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=19.32 E-value=25 Score=24.42 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=17.0
Q ss_pred HHHHHHhhcCCCCCCCCcc
Q 015612 306 ERERMAAQVFQPMHRLPTM 324 (403)
Q Consensus 306 ~R~~lq~~VFgpGh~LPTM 324 (403)
-+..+..+.|.||..||+.
T Consensus 7 i~~~I~~g~l~~G~~LPse 25 (78)
T d3bwga1 7 IETYIEEHQLQQGDKLPVL 25 (78)
T ss_dssp HHHHHHHTTCCTTCBCCCH
T ss_pred HHHHHHcCCCCCcCCCcCH
Confidence 3889999999999999983
No 4
>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=17.46 E-value=32 Score=26.04 Aligned_cols=48 Identities=19% Similarity=0.453 Sum_probs=38.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhcCCCCCCCCccccccc----------hhhhhHHHHhhhhhccc
Q 015612 31 DPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTAN----------LKYILVPYFLGELIEKI 85 (403)
Q Consensus 31 ~q~~v~~~i~~l~~~~~~v~~l~lFS~NE~leDIsT~~----------L~yLllpy~lg~L~~k~ 85 (403)
....|++.|..|+..+.+|.-|| +||+|-++ -+||.=|||.++.....
T Consensus 10 ~a~~v~~iLqrYkeLqdIIailG-------~dELSeeDk~~v~RArklq~FLtQpFfvae~fTg~ 67 (108)
T d1fx0b1 10 IAQRVKETLQRYKELQDIIAILG-------LDELSEEDRLTVARARKIERFLSQPFFVAEVFTGS 67 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-------STTSCTTTHHHHHHHHHHHHHTCCCCSSCTTTSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-------hhhcChhhhHHHHHHHHHHHHhccccccceecCCC
Confidence 35678899999999999999998 56776665 46888888888876543
No 5
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=13.95 E-value=62 Score=25.99 Aligned_cols=17 Identities=24% Similarity=0.471 Sum_probs=14.9
Q ss_pred cCCCCC--CCCcccHHHHH
Q 015612 314 VFQPMH--RLPTMSIEEAG 330 (403)
Q Consensus 314 VFgpGh--~LPTMTvdE~~ 330 (403)
||.|.| +|++||++++.
T Consensus 106 i~sp~H~~~l~~~~~e~i~ 124 (173)
T d1z84a1 106 IESPVHSIQLSDIDPVGIG 124 (173)
T ss_dssp ECCSSSSCCGGGSCHHHHH
T ss_pred EeCccccCChhhCCHHHHH
Confidence 689999 79999999873
No 6
>d3deoa1 b.34.13.2 (A:85-128) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=12.31 E-value=27 Score=21.92 Aligned_cols=9 Identities=33% Similarity=0.808 Sum_probs=6.3
Q ss_pred hccccCCCC
Q 015612 384 DDWKDDNPR 392 (403)
Q Consensus 384 Dd~KD~npR 392 (403)
=||||.|+-
T Consensus 20 iEWkD~h~p 28 (44)
T d3deoa1 20 IEWKDGHSP 28 (44)
T ss_dssp EEETTCCCC
T ss_pred EEeccCCCC
Confidence 368888864
No 7
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=10.82 E-value=40 Score=24.85 Aligned_cols=10 Identities=60% Similarity=0.866 Sum_probs=8.6
Q ss_pred CCCcccHHHH
Q 015612 320 RLPTMSIEEA 329 (403)
Q Consensus 320 ~LPTMTvdE~ 329 (403)
.||||||=|.
T Consensus 117 glptmtvmea 126 (132)
T d2h5na1 117 GLPTMTVMEA 126 (132)
T ss_dssp TCCCCCHHHH
T ss_pred CCchhHHHHH
Confidence 6999999875
No 8
>d2ahob1 a.60.14.1 (B:85-175) Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=10.13 E-value=1.5e+02 Score=20.94 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015612 131 DQRARKIARFKRQRAAESKLQEIKE 155 (403)
Q Consensus 131 ~~R~~KI~rfK~eKel~~kL~~L~~ 155 (403)
.+|..||..||.++...+-|..+.+
T Consensus 4 ~qrr~k~~~~k~~qka~~il~~vAe 28 (91)
T d2ahob1 4 DERRKKNLQWKKIQRLDKILELVSQ 28 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999988876
No 9
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=9.89 E-value=60 Score=22.23 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=16.7
Q ss_pred HHHHHhhcCCCCCCCCcc
Q 015612 307 RERMAAQVFQPMHRLPTM 324 (403)
Q Consensus 307 R~~lq~~VFgpGh~LPTM 324 (403)
++.+..+.|.||-.||+.
T Consensus 13 ~~~I~~g~~~~G~~LPs~ 30 (74)
T d1hw1a1 13 IESIWNNRFPPGTILPAE 30 (74)
T ss_dssp HHHHHTTSSCTTSBCCCH
T ss_pred HHHHHcCCCCCcCCCccH
Confidence 899999999999999984
No 10
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.54 E-value=45 Score=23.83 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=9.1
Q ss_pred CCCcccHHHH
Q 015612 320 RLPTMSIEEA 329 (403)
Q Consensus 320 ~LPTMTvdE~ 329 (403)
+||++|.+|.
T Consensus 1 slP~~T~~Ev 10 (91)
T d1soxa2 1 SYPEYTREEV 10 (91)
T ss_dssp CCCEECHHHH
T ss_pred CCCccCHHHH
Confidence 6999999987
Done!