BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015613
(403 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 151 bits (381), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 144/299 (48%), Gaps = 71/299 (23%)
Query: 110 EDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYS----------SGFK--PIT 157
++I + + S +V TGAGIS E GIP +R +G + SGFK P
Sbjct: 3 DEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRA 62
Query: 158 HQQFVXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHR 217
+F + A+PNPAH+A+A LE+ G + +ITQN+D LH R
Sbjct: 63 FWEFSMEMKDK--------------LFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQR 108
Query: 218 AGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFG 276
AGS LELHG++ + CLDC ++ W+E +E + G
Sbjct: 109 AGSRRVLELHGSMDKLDCLDCHETY--------------DWSEFVEDFNKGE-------- 146
Query: 277 MKQRPDGDIEIDEKFWEEDFHIPTCQKCNGV-LKPDVVFFGDNVPKDRADKAMEAAKECD 335
IP C+KC +KP VV FG+ +P+ +A+E AK CD
Sbjct: 147 ---------------------IPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCD 185
Query: 336 AFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLD 394
AF+V+GSSL+ A L A +AG+ + IVN T AD + +KI + GE+LP++++
Sbjct: 186 AFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVE 244
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
Crystal)
pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
Peptide And Dadme-Nad+
pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
Length = 246
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 139/290 (47%), Gaps = 49/290 (16%)
Query: 114 QLYQFFD--NSAKLIV-LTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXX 170
++ +F D N ++L V LTGAGIST GIPD+R PNG Y + + F
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFF--YSHPEE 59
Query: 171 XXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTV 229
+ A+PN AH LA LE+ G I+ +ITQN+DRLH RAGS +ELHG V
Sbjct: 60 FYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNV 119
Query: 230 YTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDE 289
C+ C + +D +K L ES D
Sbjct: 120 EEYYCVRCEKKYT---VEDVIKKL--------ESSD------------------------ 144
Query: 290 KFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSA 349
+P C CN +++P++VFFG+N+P+D +A+ + +VLGSSL+ A
Sbjct: 145 --------VPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPA 196
Query: 350 YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS 399
L +G + IVN+GET DD+ TLK + + E RV++ G +S
Sbjct: 197 AELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGIS 246
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
Length = 246
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 139/290 (47%), Gaps = 49/290 (16%)
Query: 114 QLYQFFD--NSAKLIV-LTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXX 170
++ +F D N ++L V LTGAGIST GIPD+R PNG Y + + F
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFF--YSHPEE 59
Query: 171 XXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTV 229
+ A+PN AH LA LE+ G I+ +ITQN+DRLH RAGS +EL+G V
Sbjct: 60 FYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELYGNV 119
Query: 230 YTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDE 289
C+ C + +D +K L ES D
Sbjct: 120 EEYYCVRCEKKYT---VEDVIKKL--------ESSD------------------------ 144
Query: 290 KFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSA 349
+P C CN +++P++VFFG+N+P+D +A+ + +VLGSSL+ A
Sbjct: 145 --------VPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPA 196
Query: 350 YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS 399
L +G + IVN+GET DD+ TLK + + E RV++ G +S
Sbjct: 197 AELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGIS 246
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
Length = 246
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 138/290 (47%), Gaps = 49/290 (16%)
Query: 114 QLYQFFD--NSAKLIV-LTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXX 170
++ +F D N ++L V LTGAGIST GIPD+R PNG Y + + F
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 171 XXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTV 229
+ A+PN AH LA LE+ G I+ +ITQN+DRLH RAGS +EL G V
Sbjct: 62 RFAKEGIFP--MLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELAGNV 119
Query: 230 YTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDE 289
C+ C + +D +K L ES D
Sbjct: 120 EEYYCVRCEKKYT---VEDVIKKL--------ESSD------------------------ 144
Query: 290 KFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSA 349
+P C CN +++P++VFFG+N+P+D +A+ + +VLGSSL+ A
Sbjct: 145 --------VPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPA 196
Query: 350 YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS 399
L +G + IVN+GET DD+ TLK + + E RV++ G +S
Sbjct: 197 AELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGIS 246
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex
Length = 249
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 115/277 (41%), Gaps = 48/277 (17%)
Query: 114 QLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXX 173
+L + S L+ LTGAG+S E GIP +R +G ++ ++P
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKVWK 62
Query: 174 XXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTV 232
AQPN AH A A LE+ G + C+ITQNVD LH RAGS N + LHG++ V
Sbjct: 63 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVV 122
Query: 233 VCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFW 292
C C SF +ES P
Sbjct: 123 RCTSCNNSF------------------EVESAPKIPP----------------------- 141
Query: 293 EEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRL 352
+P C KC +L+P VV+FG+ +P D D+AM + D +V G+S + A L
Sbjct: 142 -----LPKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASL 196
Query: 353 VRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 389
+ G I +N ET + + + GE++
Sbjct: 197 PLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVM 233
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex
pdb|1ICI|B Chain B, Crystal Structure Of A Sir2 Homolog-Nad Complex
Length = 256
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 115/277 (41%), Gaps = 48/277 (17%)
Query: 114 QLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXX 173
+L + S L+ LTGAG+S E GIP +R +G ++ ++P
Sbjct: 15 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKVWK 73
Query: 174 XXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTV 232
AQPN AH A A LE+ G + C+ITQNVD LH RAGS N + LHG++ V
Sbjct: 74 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVV 133
Query: 233 VCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFW 292
C C SF +ES P
Sbjct: 134 RCTSCNNSF------------------EVESAPKIPP----------------------- 152
Query: 293 EEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRL 352
+P C KC +L+P VV+FG+ +P D D+AM + D +V G+S + A L
Sbjct: 153 -----LPKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASL 207
Query: 353 VRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 389
+ G I +N ET + + + GE++
Sbjct: 208 PLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVM 244
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex
Length = 249
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 115/277 (41%), Gaps = 48/277 (17%)
Query: 114 QLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXX 173
+L + S L+ LTGAG++ E GIP +R +G ++ ++P
Sbjct: 4 KLLKTIAESKYLVALTGAGVAAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKVWK 62
Query: 174 XXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTV 232
AQPN AH A A LE+ G + C+ITQNVD LH RAGS N + LHG++ V
Sbjct: 63 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVV 122
Query: 233 VCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFW 292
C C SF +ES P
Sbjct: 123 RCTSCNNSF------------------EVESAPKIPP----------------------- 141
Query: 293 EEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRL 352
+P C KC +L+P VV+FG+ +P D D+AM + D +V G+S + A L
Sbjct: 142 -----LPKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASL 196
Query: 353 VRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 389
+ G I +N ET + + + GE++
Sbjct: 197 PLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVM 233
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex
Length = 249
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 115/277 (41%), Gaps = 48/277 (17%)
Query: 114 QLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXX 173
+L + S L+ LTGAG+S E GIP +R +G ++ ++P
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKVWK 62
Query: 174 XXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTV 232
AQPN A+ A A LE+ G + C+ITQNVD LH RAGS N + LHG++ V
Sbjct: 63 WYAWRMEKVFNAQPNKANQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVV 122
Query: 233 VCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFW 292
C C SF +ES P
Sbjct: 123 RCTSCNNSF------------------EVESAPKIPP----------------------- 141
Query: 293 EEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRL 352
+P C KC +L+P VV+FG+ +P D D+AM + D +V G+S + A L
Sbjct: 142 -----LPKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASL 196
Query: 353 VRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 389
+ G I +N ET + + + GE++
Sbjct: 197 PLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVM 233
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex
Length = 249
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 114/277 (41%), Gaps = 48/277 (17%)
Query: 114 QLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXX 173
+L + S L+ LTGAG+S E GIP +R +G ++ ++P
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKVWK 62
Query: 174 XXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTV 232
AQPN AH A A LE+ G + C+ITQNVD LH RAGS N + LHG++ V
Sbjct: 63 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVV 122
Query: 233 VCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFW 292
C C SF +ES P
Sbjct: 123 RCTSCNNSF------------------EVESAPKIPP----------------------- 141
Query: 293 EEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRL 352
+P C KC +L+P VV+ G+ +P D D+AM + D +V G+S + A L
Sbjct: 142 -----LPKCDKCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASL 196
Query: 353 VRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 389
+ G I +N ET + + + GE++
Sbjct: 197 PLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVM 233
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
pdb|1M2N|B Chain B, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
Length = 249
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 113/277 (40%), Gaps = 48/277 (17%)
Query: 114 QLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXX 173
+L + S L+ LTGAG+S E GIP +R +G ++ ++P
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKVWK 62
Query: 174 XXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTV 232
AQPN AH A A LE+ G + C+ITQNVD LH RAGS N + LHG++ V
Sbjct: 63 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDGLHERAGSRNVIHLHGSLRVV 122
Query: 233 VCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFW 292
C C SF +ES P
Sbjct: 123 RCTSCNNSF------------------EVESAPKIPP----------------------- 141
Query: 293 EEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRL 352
+P C KC +L+P VV+ G+ +P D D AM + D +V G+S + A L
Sbjct: 142 -----LPKCDKCGSLLRPGVVWAGEMLPPDVLDAAMREVERADVIIVAGTSAVVQPAASL 196
Query: 353 VRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 389
+ G I +N ET + + + GE++
Sbjct: 197 PLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVM 233
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 137/321 (42%), Gaps = 64/321 (19%)
Query: 91 SPKVLRDKKAVPDA-DPPSI--EDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNG 147
SP + K +P+ DPP + +L + S+ ++ TGAGIST GIPD+R P+G
Sbjct: 10 SPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHG 69
Query: 148 AYS---SGFKPITHQQFVXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRID 204
++ G P +F F +A+P H AL LE+ G +
Sbjct: 70 VWTMEERGLAP----KF-----------------DTTFESARPTQTHMALVQLERVGLLR 108
Query: 205 CMITQNVDRLHHRAG---SNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAI 261
+++QNVD LH R+G ELHG ++ C C + RD V + K +
Sbjct: 109 FLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTV---VGTMGLKATGRL 165
Query: 262 ESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPK 321
++ ++ G++ C G L+ ++ + D++P
Sbjct: 166 CTV-------AKARGLRA------------------------CRGELRDTILDWEDSLPD 194
Query: 322 DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKI 381
A EA++ D + LG+SL + L A G + IVN+ T+ D L+I
Sbjct: 195 RDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRI 254
Query: 382 SARLGEILPRVLDVGSLSIPA 402
+ E++ R+++ L IPA
Sbjct: 255 HGYVDEVMTRLMEHLGLEIPA 275
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 135/324 (41%), Gaps = 64/324 (19%)
Query: 88 APASPKVLRDKKAVPDA-DPPSI--EDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRS 144
A SP + K +P+ DPP + +L + S+ ++ TGAGIST GIPD+R
Sbjct: 7 AGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRG 66
Query: 145 PNGAYS---SGFKPITHQQFVXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAG 201
P+G ++ G P F +A+P H AL LE+ G
Sbjct: 67 PHGVWTMEERGLAP---------------------KFDTTFESARPTQTHMALVQLERVG 105
Query: 202 RIDCMITQNVDRLHHRAG---SNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWA 258
+ +++QNVD LH R+G ELHG ++ C C + RD V + K
Sbjct: 106 LLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTV---VGTMGLKAT 162
Query: 259 EAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDN 318
+ ++ ++ G++ C G L+ ++ + D+
Sbjct: 163 GRLCTV-------AKARGLR------------------------ACRGELRDTILDWEDS 191
Query: 319 VPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTT 378
+P A EA++ D + LG+SL + L A G + IVN+ T+ D
Sbjct: 192 LPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHAD 251
Query: 379 LKISARLGEILPRVLDVGSLSIPA 402
L+I + E++ R++ L IPA
Sbjct: 252 LRIHGYVDEVMTRLMKHLGLEIPA 275
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
pdb|4G1C|B Chain B, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
Length = 267
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 119/284 (41%), Gaps = 34/284 (11%)
Query: 117 QFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXXXXX 176
+FF + +++++GAG+S E G+P +R G Y ++ +
Sbjct: 10 KFFAKAKHIVIISGAGVSAESGVPTFRG-AGGYWRKWQAQDLATPLAFAHNPSRVWEFYH 68
Query: 177 XXXXXFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYT 231
+ +PN H A+A E K GR +ITQN+D LH +AG+ N LE+HG+++
Sbjct: 69 YRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFK 128
Query: 232 VVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKF 291
C CG + ++ + P A+ PG+ D I +++
Sbjct: 129 TRCTSCGV-----VAENYKSPICP----ALSGKGAPEPGTQ---------DASIPVEK-- 168
Query: 292 WEEDFHIPTCQK--CNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSA 349
+P C++ C G+L+P VV+FG+N+ ++ CD LV+G+S + A
Sbjct: 169 ------LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPA 222
Query: 350 YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 393
G +A N T A + G LP L
Sbjct: 223 AMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 266
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIG|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|4F4U|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F4U|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
Length = 273
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 119/284 (41%), Gaps = 34/284 (11%)
Query: 117 QFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXXXXX 176
+FF + +++++GAG+S E G+P +R G Y ++ +
Sbjct: 16 KFFAKAKHIVIISGAGVSAESGVPTFRG-AGGYWRKWQAQDLATPLAFAHNPSRVWEFYH 74
Query: 177 XXXXXFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYT 231
+ +PN H A+A E K GR +ITQN+D LH +AG+ N LE+HG+++
Sbjct: 75 YRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFK 134
Query: 232 VVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKF 291
C CG + ++ + P A+ PG+ D I +++
Sbjct: 135 TRCTSCGV-----VAENYKSPICP----ALSGKGAPEPGTQ---------DASIPVEK-- 174
Query: 292 WEEDFHIPTCQK--CNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSA 349
+P C++ C G+L+P VV+FG+N+ ++ CD LV+G+S + A
Sbjct: 175 ------LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPA 228
Query: 350 YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 393
G +A N T A + G LP L
Sbjct: 229 AMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 272
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
pdb|2NYR|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
Length = 271
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 119/284 (41%), Gaps = 34/284 (11%)
Query: 117 QFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXXXXX 176
+FF + +++++GAG+S E G+P +R G Y ++ +
Sbjct: 14 KFFAKAKHIVIISGAGVSAESGVPTFRG-AGGYWRKWQAQDLATPLAFAHNPSRVWEFYH 72
Query: 177 XXXXXFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYT 231
+ +PN H A+A E K GR +ITQN+D LH +AG+ N LE+HG+++
Sbjct: 73 YRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFK 132
Query: 232 VVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKF 291
C CG + ++ + P A+ PG+ D I +++
Sbjct: 133 TRCTSCGV-----VAENYKSPICP----ALSGKGAPEPGTQ---------DASIPVEK-- 172
Query: 292 WEEDFHIPTCQK--CNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSA 349
+P C++ C G+L+P VV+FG+N+ ++ CD LV+G+S + A
Sbjct: 173 ------LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPA 226
Query: 350 YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 393
G +A N T A + G LP L
Sbjct: 227 AMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 270
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
pdb|4HDA|B Chain B, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
Length = 275
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 119/284 (41%), Gaps = 34/284 (11%)
Query: 117 QFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXXXXX 176
+FF + +++++GAG+S E G+P +R G Y ++ +
Sbjct: 18 KFFAKAKHIVIISGAGVSAESGVPTFRG-AGGYWRKWQAQDLATPLAFAHNPSRVWEFYH 76
Query: 177 XXXXXFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYT 231
+ +PN H A+A E K GR +ITQN+D LH +AG+ N LE+HG+++
Sbjct: 77 YRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFK 136
Query: 232 VVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKF 291
C CG + ++ + P A+ PG+ D I +++
Sbjct: 137 TRCTSCGV-----VAENYKSPICP----ALSGKGAPEPGTQ---------DASIPVEK-- 176
Query: 292 WEEDFHIPTCQK--CNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSA 349
+P C++ C G+L+P VV+FG+N+ ++ CD LV+G+S + A
Sbjct: 177 ------LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPA 230
Query: 350 YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 393
G +A N T A + G LP L
Sbjct: 231 AMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 274
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|C Chain C, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|D Chain D, Crystal Structure Of Human Sirtuin Homolog 5
Length = 271
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 119/284 (41%), Gaps = 34/284 (11%)
Query: 117 QFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXXXXX 176
+FF + +++++GAG+S E G+P +R G Y ++ +
Sbjct: 14 KFFAKAKHIVIISGAGVSAESGVPTFRG-AGGYWRKWQAQDLATPLAFAHNPSRVWEFYH 72
Query: 177 XXXXXFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYT 231
+ +PN H A+A E K GR +ITQN+D LH +AG+ N LE+HG+++
Sbjct: 73 YRREVXGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFK 132
Query: 232 VVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKF 291
C CG + ++ + P A+ PG+ D I +++
Sbjct: 133 TRCTSCGV-----VAENYKSPICP----ALSGKGAPEPGTQ---------DASIPVEK-- 172
Query: 292 WEEDFHIPTCQK--CNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSA 349
+P C++ C G+L+P VV+FG+N+ ++ CD LV+G+S + A
Sbjct: 173 ------LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPA 226
Query: 350 YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 393
G +A N T A + G LP L
Sbjct: 227 AXFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 270
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
Length = 290
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 119/293 (40%), Gaps = 45/293 (15%)
Query: 105 DPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXX 164
D SI + +L + ++ LTG+G S E IP +R + + S + P +
Sbjct: 29 DTQSI-TLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGF 87
Query: 165 XXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-L 223
+ + N H AL++LE G + ++TQNVD LH +G+ +
Sbjct: 88 WKYPEKIWEVIRDISSDY-EIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKVI 146
Query: 224 ELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDG 283
LHG V+ VC C +++ LN + S M Q P
Sbjct: 147 SLHGNVFEAVCCTC----------NKIVKLNKIMLQ------------KTSHFMHQLP-- 182
Query: 284 DIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSS 343
P C C G+ KP+++ FG+ V D +A E +CD LV+G+S
Sbjct: 183 ---------------PECP-CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTS 226
Query: 344 LMTMSAYRLVRAAHEAGSTIAIVNVGETR-ADDLTTLKISARLGEILPRVLDV 395
+A L A + I +N+ +T + ++ + A+ E L +V ++
Sbjct: 227 STVSTATNLCHFACKKKKKIVEINISKTYITNKMSDYHVCAKFSE-LTKVANI 278
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 116/293 (39%), Gaps = 45/293 (15%)
Query: 105 DPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXX 164
D SI + +L + ++ LTG+G S E IP +R + + S + P +
Sbjct: 4 DTQSI-TLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGF 62
Query: 165 XXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-L 223
+ + N H AL++LE G + ++TQNVD LH +G+ +
Sbjct: 63 WKYPEKIWEVIRDISSDY-EIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKVI 121
Query: 224 ELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDG 283
LHG V+ VC C +++ LN + + P
Sbjct: 122 SLHGNVFEAVCCTC----------NKIVKLNKIXLQKTSHFXHQLP-------------- 157
Query: 284 DIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSS 343
P C C G+ KP+++ FG+ V D +A E +CD LV+G+S
Sbjct: 158 ---------------PECP-CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTS 201
Query: 344 LMTMSAYRLVRAAHEAGSTIAIVNVGETR-ADDLTTLKISARLGEILPRVLDV 395
+A L A + I +N+ +T + + + A+ E L +V ++
Sbjct: 202 STVSTATNLCHFACKKKKKIVEINISKTYITNKXSDYHVCAKFSE-LTKVANI 253
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 101/252 (40%), Gaps = 40/252 (15%)
Query: 112 INQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITH-----QQFVXXXX 166
I+ Q + K++VLTGAG+ST GIPD+RS G YS I H Q V
Sbjct: 174 IDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSK----IKHLGLDDPQDVFNYN 229
Query: 167 XXXXXXXXXXXXXXXFMAAQP--NPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-- 222
+ + +P H + L+ G++ TQN+D L AG +
Sbjct: 230 IFMHDPSVFYNIANMVLPPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDK 289
Query: 223 -LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAI--ESLDYGSPGSDRSFG--- 276
++ HG+ T C+ C ++ + ++++ L + +Y G + G
Sbjct: 290 LVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLCPYCYKKRREYFPEGYNNKVGVAA 349
Query: 277 ----MKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAK 332
M +RP P GVLKPD+ FFG+ +P E
Sbjct: 350 SQGSMSERP-----------------PYILNSYGVLKPDITFFGEALPNKFHKSIREDIL 392
Query: 333 ECDAFLVLGSSL 344
ECD + +G+SL
Sbjct: 393 ECDLLICIGTSL 404
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 103/254 (40%), Gaps = 26/254 (10%)
Query: 112 INQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITH-----QQFVXXXX 166
I+ Q + K++VLTGAG+ST GIPD+RS G YS I H Q V
Sbjct: 36 IDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSK----IKHLGLDDPQDVFNYN 91
Query: 167 XXXXXXXXXXXXXXXFMAAQP--NPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-- 222
+ + +P H + L+ G++ TQN+D L AG +
Sbjct: 92 IFXHDPSVFYNIANXVLPPEKIYSPLHSFIKXLQXKGKLLRNYTQNIDNLESYAGISTDK 151
Query: 223 -LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAI--ESLDYGSPGSDRSFGMKQ 279
++ HG+ T C+ C ++ + ++++ L + +Y G + G+
Sbjct: 152 LVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLCPYCYKKRREYFPEGYNNKVGVAA 211
Query: 280 RPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLV 339
E P GVLKPD+ FFG+ +P E ECD +
Sbjct: 212 SQGSXSE----------RPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLIC 261
Query: 340 LGSSLMTMSAYRLV 353
+G+SL +V
Sbjct: 262 IGTSLKVAPVSEIV 275
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
pdb|4I5I|B Chain B, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
Length = 287
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 106/249 (42%), Gaps = 59/249 (23%)
Query: 108 SIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSS---GFKPITHQQFVXX 164
+IED +L Q K+IVLTGAG+S CGIPD+RS +G Y+ F + Q +
Sbjct: 5 TIEDAVKLLQ---ECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAVDFPDLPDPQAMFD 61
Query: 165 XXXXXXXXXXXXXXXXXFMAA--QPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG-SN 221
QP+ H +A +K G++ TQN+D L AG
Sbjct: 62 IEYFRKDPRPFFKFAKEIYPGQFQPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGIQR 121
Query: 222 PLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRP 281
++ HG+ T CL C + EA+
Sbjct: 122 IIQCHGSFATASCLICKYKV---------------DCEAVR------------------- 147
Query: 282 DGDIEIDEKFWEEDFHIPTCQKCN-----GVLKPDVVFFGDNVPKDRADKAMEAAK-ECD 335
GDI F + +P C +C ++KP++VFFG+N+P ++ +AM+ K E D
Sbjct: 148 -GDI-----FNQV---VPRCPRCPADEPLAIMKPEIVFFGENLP-EQFHRAMKYDKDEVD 197
Query: 336 AFLVLGSSL 344
+V+GSSL
Sbjct: 198 LLIVIGSSL 206
>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad
Length = 274
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 95/245 (38%), Gaps = 54/245 (22%)
Query: 108 SIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFK----PITHQQFVX 163
S++D+ +L + +++V+ GAGIST GIPD+RSP S + P F
Sbjct: 3 SLQDVAELIRA-RACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFEL 61
Query: 164 XXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---S 220
+PN H+ L L G + + TQN+D L +G S
Sbjct: 62 PFFFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPAS 121
Query: 221 NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSD-RSFGMKQ 279
+E HGT + C C F PG D R+ M
Sbjct: 122 KLVEAHGTFASATCTVCQRPF---------------------------PGEDIRADVMAD 154
Query: 280 RPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLV 339
R +P C C GV+KPD+VFFG+ +P+ ++ D L+
Sbjct: 155 R-----------------VPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPM-ADLLLI 196
Query: 340 LGSSL 344
LG+SL
Sbjct: 197 LGTSL 201
>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2
Peptide
pdb|3GLS|A Chain A, Crystal Structure Of Human Sirt3
pdb|3GLS|B Chain B, Crystal Structure Of Human Sirt3
pdb|3GLS|C Chain C, Crystal Structure Of Human Sirt3
pdb|3GLS|D Chain D, Crystal Structure Of Human Sirt3
pdb|3GLS|E Chain E, Crystal Structure Of Human Sirt3
pdb|3GLS|F Chain F, Crystal Structure Of Human Sirt3
pdb|3GLT|A Chain A, Crystal Structure Of Human Sirt3 With Adpr Bound To The
Acecs2 Peptide Containing A Thioacetyl Lysine
pdb|3GLU|A Chain A, Crystal Structure Of Human Sirt3 With Acecs2 Peptide
Length = 285
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 95/245 (38%), Gaps = 54/245 (22%)
Query: 108 SIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFK----PITHQQFVX 163
S++D+ +L + +++V+ GAGIST GIPD+RSP S + P F
Sbjct: 10 SLQDVAELIRA-RACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFEL 68
Query: 164 XXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---S 220
+PN H+ L L G + + TQN+D L +G S
Sbjct: 69 PFFFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPAS 128
Query: 221 NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSD-RSFGMKQ 279
+E HGT + C C F PG D R+ M
Sbjct: 129 KLVEAHGTFASATCTVCQRPF---------------------------PGEDIRADVMAD 161
Query: 280 RPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLV 339
R +P C C GV+KPD+VFFG+ +P+ ++ D L+
Sbjct: 162 R-----------------VPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPM-ADLLLI 203
Query: 340 LGSSL 344
LG+SL
Sbjct: 204 LGTSL 208
>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With
Fluor-de-lys Peptide And Piceatannol
Length = 284
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 95/245 (38%), Gaps = 54/245 (22%)
Query: 108 SIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFK----PITHQQFVX 163
S++D+ +L + +++V+ GAGIST GIPD+RSP S + P F
Sbjct: 9 SLQDVAELIRA-RACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFEL 67
Query: 164 XXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---S 220
+PN H+ L L G + + TQN+D L +G S
Sbjct: 68 PFFFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPAS 127
Query: 221 NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSD-RSFGMKQ 279
+E HGT + C C F PG D R+ M
Sbjct: 128 KLVEAHGTFASATCTVCQRPF---------------------------PGEDIRADVMAD 160
Query: 280 RPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLV 339
R +P C C GV+KPD+VFFG+ +P+ ++ D L+
Sbjct: 161 R-----------------VPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPM-ADLLLI 202
Query: 340 LGSSL 344
LG+SL
Sbjct: 203 LGTSL 207
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase
Length = 323
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 93/240 (38%), Gaps = 48/240 (20%)
Query: 124 KLIVLTGAGISTECGIPDYRSPN-GAYSSGFK---PITHQQFVXXXXXXXXXXXXXXXXX 179
++I L GAGIST GIPD+RSP+ G Y + K P F
Sbjct: 45 RVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKE 104
Query: 180 XXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---SNPLELHGTVYTVVCLD 236
+P H+ + L+ G + TQN+D L AG + +E HGT YT C+
Sbjct: 105 LYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVS 164
Query: 237 CGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDF 296
CR + P S MK++ ++
Sbjct: 165 AS---CRHEY----------------------PLS----WMKEKIFSEV----------- 184
Query: 297 HIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAA 356
P C+ C ++KPD+VFFG+++P + D LV+G+SL L+ A
Sbjct: 185 -TPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKA 243
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase
pdb|1J8F|B Chain B, Human Sirt2 Histone Deacetylase
Length = 323
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 93/240 (38%), Gaps = 48/240 (20%)
Query: 124 KLIVLTGAGISTECGIPDYRSPN-GAYSSGFK---PITHQQFVXXXXXXXXXXXXXXXXX 179
++I L GAGIST GIPD+RSP+ G Y + K P F
Sbjct: 45 RVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKE 104
Query: 180 XXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---SNPLELHGTVYTVVCLD 236
+P H+ + L+ G + TQN+D L AG + +E HGT YT C+
Sbjct: 105 LYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVS 164
Query: 237 CGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDF 296
CR + P S MK++ ++
Sbjct: 165 AS---CRHEY----------------------PLS----WMKEKIFSEV----------- 184
Query: 297 HIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAA 356
P C+ C ++KPD+VFFG+++P + D LV+G+SL L+ A
Sbjct: 185 -TPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKA 243
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2
Homolog Protein Deacetylase From Eschericia Coli
Length = 235
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 110/287 (38%), Gaps = 77/287 (26%)
Query: 124 KLIVLTGAGISTECGIPDYRSPNGAYSS----------GFK--PITHQQFVXXXXXXXXX 171
+++VLTGAGIS E GI +R+ +G + GF P Q F
Sbjct: 3 RVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQ 62
Query: 172 XXXXXXXXXXFMAAQPNPAHFALASLEKA-GRIDCMITQNVDRLHHRAG-SNPLELHGTV 229
QPN AH ALA L+ A G ++TQN+D LH RAG +N + +HG +
Sbjct: 63 PEI-----------QPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGEL 111
Query: 230 YTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDE 289
V C G + LD+ GD+ ++
Sbjct: 112 LKVRCSQSG-----------------------QVLDW---------------TGDVTPED 133
Query: 290 KFWEEDFHIPTCQKCN--GVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTM 347
K C C L+P VV+FG+ +P D+ A D F+ +G+S
Sbjct: 134 K----------CHCCQFPAPLRPHVVWFGE-MPLG-MDEIYMALSMADIFIAIGTSGHVY 181
Query: 348 SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLD 394
A V A G+ +N+ ++ + K +++P ++
Sbjct: 182 PAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVE 228
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 78/206 (37%), Gaps = 47/206 (22%)
Query: 122 SAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXXXX 177
+AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 38 NAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLA 97
Query: 178 XXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVC 234
+P+ H+ L + + + TQN+D L +AG +E HG+ C
Sbjct: 98 KELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHC 157
Query: 235 LDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEE 294
+ CG + +F+ + + + P D
Sbjct: 158 IGCGKVYPPQVFKSK---------------------------LAEHPIKDFV-------- 182
Query: 295 DFHIPTCQKCNGVLKPDVVFFGDNVP 320
C C ++KP +VFFG+++P
Sbjct: 183 -----KCDVCGELVKPAIVFFGEDLP 203
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
Length = 297
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 78/206 (37%), Gaps = 47/206 (22%)
Query: 122 SAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXXXX 177
+AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 27 NAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLA 86
Query: 178 XXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVC 234
+P+ H+ L + + + TQN+D L +AG +E HG+ C
Sbjct: 87 KELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHC 146
Query: 235 LDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEE 294
+ CG + +F+ + + + P D
Sbjct: 147 IGCGKVYPPQVFKSK---------------------------LAEHPIKDFV-------- 171
Query: 295 DFHIPTCQKCNGVLKPDVVFFGDNVP 320
C C ++KP +VFFG+++P
Sbjct: 172 -----KCDVCGELVKPAIVFFGEDLP 192
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 289
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 78/206 (37%), Gaps = 47/206 (22%)
Query: 122 SAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXXXX 177
+AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 20 NAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLA 79
Query: 178 XXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVC 234
+P+ H+ L + + + TQN+D L +AG +E HG+ C
Sbjct: 80 KELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHC 139
Query: 235 LDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEE 294
+ CG + +F+ + + + P D
Sbjct: 140 IGCGKVYPPQVFKSK---------------------------LAEHPIKDFV-------- 164
Query: 295 DFHIPTCQKCNGVLKPDVVFFGDNVP 320
C C ++KP +VFFG+++P
Sbjct: 165 -----KCDVCGELVKPAIVFFGEDLP 185
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 300
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 78/206 (37%), Gaps = 47/206 (22%)
Query: 122 SAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXXXX 177
+AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 30 NAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLA 89
Query: 178 XXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVC 234
+P+ H+ L + + + TQN+D L +AG +E HG+ C
Sbjct: 90 KELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHC 149
Query: 235 LDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEE 294
+ CG + +F+ + + + P D
Sbjct: 150 IGCGKVYPPQVFKSK---------------------------LAEHPIKDFV-------- 174
Query: 295 DFHIPTCQKCNGVLKPDVVFFGDNVP 320
C C ++KP +VFFG+++P
Sbjct: 175 -----KCDVCGELVKPAIVFFGEDLP 195
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of
Sir2
Length = 361
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 78/206 (37%), Gaps = 47/206 (22%)
Query: 122 SAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXXXX 177
+AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 28 NAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLA 87
Query: 178 XXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVC 234
+P+ H+ L + + + TQN+D L +AG +E HG+ C
Sbjct: 88 KELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHC 147
Query: 235 LDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEE 294
+ CG + +F+ + + + P D
Sbjct: 148 IGCGKVYPPQVFKSK---------------------------LAEHPIKD---------- 170
Query: 295 DFHIPTCQKCNGVLKPDVVFFGDNVP 320
C C ++KP +VFFG+++P
Sbjct: 171 ---FVKCDVCGELVKPAIVFFGEDLP 193
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To
Carba-Nad+ And An Acetylated H4 Peptide
Length = 308
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 77/206 (37%), Gaps = 47/206 (22%)
Query: 122 SAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXXXX 177
+AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 38 NAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLA 97
Query: 178 XXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVC 234
+P+ H+ L + + + TQN D L +AG +E HG+ C
Sbjct: 98 KELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNFDTLERQAGVKDDLIIEAHGSFAHCHC 157
Query: 235 LDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEE 294
+ CG + +F+ + + + P D
Sbjct: 158 IGCGKVYPPQVFKSK---------------------------LAEHPIKDFV-------- 182
Query: 295 DFHIPTCQKCNGVLKPDVVFFGDNVP 320
C C ++KP +VFFG+++P
Sbjct: 183 -----KCDVCGELVKPAIVFFGEDLP 203
>pdb|3BUL|A Chain A, E. Coli I690cG743C METH C-Terminal Fragment (649-1227)
pdb|3IV9|A Chain A, Structure Of The B12-Dependent Methionine Synthase (Meth)
C-Teminal Half In A "his-On" Conformation
pdb|3IVA|A Chain A, Structure Of The B12-Dependent Methionine Synthase (Meth)
C-Teminal Half With Adohcy Bound
Length = 579
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 303 KCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHE---A 359
+CN ++V G VP A+K + AKE +A L+ S L+T S +V A E
Sbjct: 123 QCNNY---EIVDLGVMVP---AEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQ 176
Query: 360 GSTIAIVNVGETRADDLTTLKIS 382
G TI ++ G T + T +KI
Sbjct: 177 GFTIPLLIGGATTSKAHTAVKIE 199
>pdb|1K7Y|A Chain A, E. Coli Meth C-Terminal Fragment (649-1227)
pdb|1K98|A Chain A, Adomet Complex Of Meth C-Terminal Fragment
Length = 577
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 303 KCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHE---A 359
+CN ++V G VP A+K + AKE +A L+ S L+T S +V A E
Sbjct: 121 QCNNY---EIVDLGVMVP---AEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQ 174
Query: 360 GSTIAIVNVGETRADDLTTLKIS 382
G TI ++ G T + T +KI
Sbjct: 175 GFTIPLLIGGATTSKAHTAVKIE 197
>pdb|1BMT|A Chain A, How A Protein Binds B12: A 3.O Angstrom X-Ray Structure Of
The B12-Binding Domains Of Methionine Synthase
pdb|1BMT|B Chain B, How A Protein Binds B12: A 3.O Angstrom X-Ray Structure Of
The B12-Binding Domains Of Methionine Synthase
Length = 246
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 303 KCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEA--- 359
+CN ++V G VP A+K + AKE +A L+ S L+T S +V A E
Sbjct: 121 QCNNY---EIVDLGVMVP---AEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQ 174
Query: 360 GSTIAIVNVGETRADDLTTLKIS 382
G TI ++ G T + T +KI
Sbjct: 175 GFTIPLLIGGATTSKAHTAVKIE 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,461,881
Number of Sequences: 62578
Number of extensions: 448598
Number of successful extensions: 1035
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 924
Number of HSP's gapped (non-prelim): 89
length of query: 403
length of database: 14,973,337
effective HSP length: 101
effective length of query: 302
effective length of database: 8,652,959
effective search space: 2613193618
effective search space used: 2613193618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)