Query 015613
Match_columns 403
No_of_seqs 144 out of 1229
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 07:57:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2683 Sirtuin 4 and related 100.0 1.3E-74 2.8E-79 537.5 24.1 297 81-392 6-305 (305)
2 cd01409 SIRT4 SIRT4: Eukaryoti 100.0 1.7E-65 3.6E-70 496.3 25.7 259 115-389 1-260 (260)
3 PRK05333 NAD-dependent deacety 100.0 3.7E-63 7.9E-68 485.8 29.8 274 109-399 6-280 (285)
4 PRK14138 NAD-dependent deacety 100.0 3.8E-61 8.2E-66 462.0 26.7 241 113-399 2-244 (244)
5 COG0846 SIR2 NAD-dependent pro 100.0 4.2E-60 9.2E-65 454.1 22.5 239 112-396 2-245 (250)
6 PTZ00409 Sir2 (Silent Informat 100.0 2.2E-59 4.8E-64 455.5 25.1 237 109-390 15-257 (271)
7 PRK00481 NAD-dependent deacety 100.0 1.2E-58 2.7E-63 443.8 26.6 235 111-396 2-240 (242)
8 cd01413 SIR2_Af2 SIR2_Af2: Arc 100.0 4.1E-58 8.9E-63 435.3 22.6 218 119-384 1-222 (222)
9 cd01408 SIRT1 SIRT1: Eukaryoti 100.0 5.1E-58 1.1E-62 438.1 23.4 221 123-392 1-235 (235)
10 cd01411 SIR2H SIR2H: Uncharact 100.0 4.5E-57 9.7E-62 429.0 21.9 219 115-389 1-225 (225)
11 PTZ00408 NAD-dependent deacety 100.0 2.3E-56 5.1E-61 428.1 24.3 224 120-395 2-234 (242)
12 cd01410 SIRT7 SIRT7: Eukaryoti 100.0 1.8E-56 4E-61 419.6 21.6 203 123-384 1-206 (206)
13 cd01412 SIRT5_Af1_CobB SIRT5_A 100.0 4.3E-56 9.2E-61 421.3 23.8 220 123-393 1-224 (224)
14 cd01407 SIR2-fam SIR2 family o 100.0 1.4E-55 3.1E-60 416.4 23.9 213 123-384 1-218 (218)
15 PTZ00410 NAD-dependent SIR2; P 100.0 2E-53 4.3E-58 423.8 25.5 214 110-371 15-242 (349)
16 KOG2684 Sirtuin 5 and related 100.0 3.7E-50 8.1E-55 399.8 18.7 311 38-402 5-347 (412)
17 cd00296 SIR2 SIR2 superfamily 100.0 2.2E-48 4.7E-53 366.4 23.1 213 123-384 1-222 (222)
18 PF02146 SIR2: Sir2 family; I 100.0 4.1E-48 8.8E-53 354.5 12.9 173 130-348 1-178 (178)
19 KOG2682 NAD-dependent histone 100.0 1.3E-46 2.8E-51 350.7 14.1 239 110-397 22-279 (314)
20 KOG1905 Class IV sirtuins (SIR 100.0 1.4E-46 3.1E-51 359.8 11.6 238 109-402 42-285 (353)
21 cd01406 SIR2-like Sir2-like: P 98.8 3.9E-08 8.5E-13 94.1 12.7 96 123-218 1-112 (242)
22 PF00205 TPP_enzyme_M: Thiamin 96.0 0.0087 1.9E-07 52.1 4.4 66 326-392 70-137 (137)
23 COG3962 Acetolactate synthase 94.1 0.41 8.8E-06 50.5 10.4 93 38-133 142-240 (617)
24 PRK07979 acetolactate synthase 93.5 0.11 2.3E-06 56.2 5.4 69 326-396 265-335 (574)
25 PRK08979 acetolactate synthase 93.4 0.1 2.2E-06 56.3 5.1 69 326-396 265-335 (572)
26 PRK07418 acetolactate synthase 93.3 0.12 2.6E-06 56.3 5.4 69 326-396 283-353 (616)
27 PRK05858 hypothetical protein; 93.2 0.21 4.6E-06 53.5 7.0 78 315-396 244-323 (542)
28 PRK06882 acetolactate synthase 93.1 0.14 2.9E-06 55.3 5.4 69 326-396 265-335 (574)
29 PRK06466 acetolactate synthase 92.8 0.16 3.4E-06 54.9 5.4 69 326-396 265-335 (574)
30 TIGR01504 glyox_carbo_lig glyo 92.6 0.14 3E-06 55.6 4.6 68 327-396 263-332 (588)
31 TIGR03254 oxalate_oxc oxalyl-C 92.5 0.24 5.3E-06 53.1 6.3 82 314-396 246-329 (554)
32 PLN02470 acetolactate synthase 92.4 0.2 4.3E-06 54.2 5.6 68 327-396 273-342 (585)
33 PRK09107 acetolactate synthase 92.3 0.2 4.4E-06 54.4 5.5 69 326-396 273-343 (595)
34 CHL00099 ilvB acetohydroxyacid 92.3 0.21 4.6E-06 54.0 5.6 68 327-396 277-346 (585)
35 PRK08322 acetolactate synthase 92.3 0.23 5.1E-06 53.0 5.8 68 326-396 255-324 (547)
36 PRK07789 acetolactate synthase 92.2 0.2 4.3E-06 54.5 5.3 69 326-396 290-360 (612)
37 PRK08527 acetolactate synthase 92.1 0.22 4.8E-06 53.6 5.5 68 327-396 263-332 (563)
38 PRK06725 acetolactate synthase 92.1 0.21 4.6E-06 54.0 5.3 69 326-396 273-343 (570)
39 PRK07524 hypothetical protein; 92.1 0.18 3.9E-06 53.9 4.6 72 325-397 255-329 (535)
40 COG0028 IlvB Thiamine pyrophos 92.0 0.24 5.1E-06 53.6 5.5 68 326-396 259-328 (550)
41 PRK07282 acetolactate synthase 92.0 0.23 5E-06 53.6 5.5 69 326-396 269-339 (566)
42 TIGR00118 acolac_lg acetolacta 91.8 0.23 5E-06 53.3 5.2 69 326-396 260-330 (558)
43 PRK09259 putative oxalyl-CoA d 91.5 0.36 7.9E-06 52.0 6.3 82 314-396 253-336 (569)
44 PRK06154 hypothetical protein; 91.5 0.29 6.3E-06 52.9 5.5 67 326-396 273-341 (565)
45 PRK06048 acetolactate synthase 91.5 0.28 6.1E-06 52.7 5.4 69 327-397 267-337 (561)
46 PRK11269 glyoxylate carboligas 91.5 0.27 5.8E-06 53.3 5.3 68 327-396 264-333 (591)
47 TIGR02418 acolac_catab acetola 91.4 0.35 7.6E-06 51.7 5.9 67 327-396 256-324 (539)
48 PRK08155 acetolactate synthase 91.3 0.35 7.6E-06 52.0 6.0 68 327-396 271-340 (564)
49 PRK06112 acetolactate synthase 91.3 0.25 5.5E-06 53.3 4.8 69 326-396 277-346 (578)
50 PRK08273 thiamine pyrophosphat 91.1 0.3 6.6E-06 53.0 5.3 66 326-396 265-332 (597)
51 TIGR00173 menD 2-succinyl-5-en 91.0 0.61 1.3E-05 48.6 7.2 65 328-396 270-336 (432)
52 PRK06456 acetolactate synthase 91.0 0.34 7.5E-06 52.1 5.5 69 327-396 267-337 (572)
53 PRK08327 acetolactate synthase 91.0 0.27 5.8E-06 53.1 4.6 67 327-397 273-344 (569)
54 PRK08611 pyruvate oxidase; Pro 90.9 0.47 1E-05 51.3 6.4 63 327-396 261-325 (576)
55 PRK08978 acetolactate synthase 90.8 0.31 6.7E-06 52.2 5.0 68 326-395 255-324 (548)
56 PRK06965 acetolactate synthase 90.7 0.42 9.1E-06 51.8 5.9 70 326-396 280-351 (587)
57 PRK06276 acetolactate synthase 90.3 0.38 8.2E-06 52.1 5.1 69 326-396 262-332 (586)
58 PRK07525 sulfoacetaldehyde ace 90.3 0.32 7E-06 52.6 4.6 70 327-396 260-332 (588)
59 PRK08266 hypothetical protein; 90.1 0.28 6.1E-06 52.4 3.9 67 327-396 257-324 (542)
60 PRK08199 thiamine pyrophosphat 89.9 0.43 9.3E-06 51.3 5.1 71 326-396 263-336 (557)
61 PRK06546 pyruvate dehydrogenas 89.9 0.55 1.2E-05 50.8 5.9 64 326-397 258-323 (578)
62 TIGR03457 sulphoacet_xsc sulfo 89.6 0.39 8.4E-06 51.9 4.4 69 326-396 255-328 (579)
63 PRK07710 acetolactate synthase 89.6 0.53 1.2E-05 50.8 5.4 69 326-396 274-344 (571)
64 PRK09124 pyruvate dehydrogenas 88.6 0.84 1.8E-05 49.2 6.1 63 327-396 259-323 (574)
65 smart00834 CxxC_CXXC_SSSS Puta 88.2 0.39 8.4E-06 33.0 2.2 14 229-242 3-16 (41)
66 PF07295 DUF1451: Protein of u 88.0 0.36 7.9E-06 43.4 2.4 11 297-307 129-139 (146)
67 PRK08617 acetolactate synthase 87.9 0.81 1.8E-05 49.1 5.5 67 327-396 262-330 (552)
68 PF04574 DUF592: Protein of un 87.2 0.47 1E-05 42.7 2.6 32 47-82 27-58 (153)
69 TIGR02720 pyruv_oxi_spxB pyruv 87.2 0.98 2.1E-05 48.8 5.6 66 327-396 258-325 (575)
70 PRK11032 hypothetical protein; 86.9 0.46 1E-05 43.3 2.4 10 297-306 141-150 (160)
71 PRK07064 hypothetical protein; 86.4 1.1 2.3E-05 48.0 5.3 68 326-396 257-326 (544)
72 cd02766 MopB_3 The MopB_3 CD i 85.8 1.4 3E-05 46.9 5.7 55 328-382 152-208 (501)
73 PLN02573 pyruvate decarboxylas 85.7 0.68 1.5E-05 50.2 3.4 68 326-396 284-351 (578)
74 PRK06457 pyruvate dehydrogenas 84.5 2.1 4.5E-05 46.0 6.4 60 326-392 252-313 (549)
75 PF09723 Zn-ribbon_8: Zinc rib 84.3 0.82 1.8E-05 32.2 2.2 14 229-242 3-16 (42)
76 PRK07092 benzoylformate decarb 83.4 1.2 2.5E-05 47.7 4.0 71 326-397 265-336 (530)
77 cd02750 MopB_Nitrate-R-NarG-li 82.7 3 6.5E-05 43.8 6.6 57 328-384 165-223 (461)
78 TIGR02605 CxxC_CxxC_SSSS putat 82.7 1.7 3.7E-05 31.6 3.4 14 229-242 3-16 (52)
79 KOG1185 Thiamine pyrophosphate 82.6 1.1 2.3E-05 47.5 3.2 79 316-396 259-341 (571)
80 TIGR03393 indolpyr_decarb indo 82.4 0.7 1.5E-05 49.5 1.8 68 326-396 265-334 (539)
81 cd02765 MopB_4 The MopB_4 CD i 82.1 2.7 5.9E-05 45.4 6.2 55 328-382 154-210 (567)
82 COG3383 Uncharacterized anaero 81.4 2 4.2E-05 47.9 4.7 67 328-394 415-484 (978)
83 PRK07449 2-succinyl-5-enolpyru 81.3 4.1 8.8E-05 43.8 7.1 62 327-391 280-343 (568)
84 cd02759 MopB_Acetylene-hydrata 80.1 3.7 8E-05 43.2 6.2 54 329-382 156-212 (477)
85 cd02753 MopB_Formate-Dh-H Form 79.2 4.7 0.0001 42.6 6.7 54 329-382 152-207 (512)
86 cd02768 MopB_NADH-Q-OR-NuoG2 M 79.2 7.4 0.00016 39.3 7.9 56 329-386 144-202 (386)
87 TIGR02098 MJ0042_CXXC MJ0042 f 77.9 1.4 3E-05 30.0 1.5 12 231-242 2-13 (38)
88 PF09845 DUF2072: Zn-ribbon co 77.5 1.1 2.4E-05 39.5 1.1 10 233-242 3-12 (131)
89 cd00368 Molybdopterin-Binding 77.0 5.8 0.00013 39.6 6.3 53 329-381 152-206 (374)
90 cd02755 MopB_Thiosulfate-R-lik 76.9 3.5 7.7E-05 43.1 4.9 53 330-382 153-208 (454)
91 TIGR03479 DMSO_red_II_alp DMSO 76.3 3.6 7.9E-05 47.1 5.1 54 328-381 219-274 (912)
92 cd02752 MopB_Formate-Dh-Na-lik 76.1 6.2 0.00013 43.7 6.7 56 329-384 165-223 (649)
93 cd02767 MopB_ydeP The MopB_yde 76.1 7.1 0.00015 42.5 7.0 43 329-371 159-203 (574)
94 PRK03363 fixB putative electro 76.0 5.9 0.00013 40.0 6.0 59 333-396 252-311 (313)
95 PRK11916 electron transfer fla 75.5 6.1 0.00013 39.9 5.9 59 333-396 251-310 (312)
96 TIGR03844 cysteate_syn cysteat 75.2 7.2 0.00016 40.5 6.5 13 230-242 1-13 (398)
97 cd02762 MopB_1 The MopB_1 CD i 75.0 4.9 0.00011 43.0 5.5 56 329-384 152-215 (539)
98 PF13717 zinc_ribbon_4: zinc-r 74.8 2.2 4.7E-05 29.2 1.8 13 231-243 2-14 (36)
99 cd02754 MopB_Nitrate-R-NapA-li 74.7 6.2 0.00013 42.4 6.1 54 329-382 153-210 (565)
100 PLN00022 electron transfer fla 74.2 6.1 0.00013 40.6 5.6 59 333-396 293-352 (356)
101 PF14353 CpXC: CpXC protein 74.2 1.1 2.3E-05 38.8 0.1 13 232-244 2-14 (128)
102 TIGR01553 formate-DH-alph form 73.9 7.6 0.00017 45.2 6.9 56 329-384 217-274 (1009)
103 PRK09939 putative oxidoreducta 73.8 8.6 0.00019 43.3 7.2 44 328-371 203-248 (759)
104 PRK06260 threonine synthase; V 73.2 2.3 5E-05 43.9 2.3 13 230-242 2-14 (397)
105 TIGR03394 indol_phenyl_DC indo 72.6 2.2 4.7E-05 45.8 2.0 68 326-396 261-330 (535)
106 TIGR01591 Fdh-alpha formate de 71.6 7.2 0.00016 42.7 5.9 53 329-381 151-205 (671)
107 cd02770 MopB_DmsA-EC This CD ( 71.3 9 0.0002 41.8 6.5 54 329-382 162-221 (617)
108 PRK06266 transcription initiat 70.4 3 6.4E-05 38.7 2.1 12 299-310 137-148 (178)
109 COG3364 Zn-ribbon containing p 70.2 1.8 3.9E-05 36.6 0.6 11 232-242 3-13 (112)
110 PRK00398 rpoP DNA-directed RNA 70.1 3.6 7.8E-05 29.3 2.1 12 231-242 3-14 (46)
111 PF13719 zinc_ribbon_5: zinc-r 70.0 3 6.6E-05 28.5 1.6 12 231-242 2-13 (37)
112 cd05014 SIS_Kpsf KpsF-like pro 69.8 12 0.00026 31.5 5.7 55 330-384 44-99 (128)
113 cd02763 MopB_2 The MopB_2 CD i 69.4 11 0.00024 41.9 6.7 55 329-383 151-207 (679)
114 TIGR03471 HpnJ hopanoid biosyn 68.9 21 0.00045 37.7 8.4 71 326-396 61-140 (472)
115 PRK07591 threonine synthase; V 68.9 3.4 7.4E-05 43.1 2.5 15 228-242 15-29 (421)
116 TIGR00373 conserved hypothetic 68.5 4.5 9.8E-05 36.7 2.9 15 229-243 107-121 (158)
117 TIGR00509 bisC_fam molybdopter 68.4 9.7 0.00021 42.7 6.1 51 331-381 165-226 (770)
118 COG2025 FixB Electron transfer 68.4 11 0.00025 38.0 5.9 59 333-396 251-310 (313)
119 PF00384 Molybdopterin: Molybd 68.1 7 0.00015 39.9 4.5 53 330-382 108-163 (432)
120 CHL00174 accD acetyl-CoA carbo 67.8 17 0.00037 36.4 7.0 22 348-369 156-177 (296)
121 PRK00564 hypA hydrogenase nick 67.8 3.9 8.5E-05 35.2 2.2 20 223-242 63-82 (117)
122 PRK13937 phosphoheptose isomer 67.7 15 0.00033 33.8 6.3 55 330-384 103-158 (188)
123 cd02773 MopB_Res-Cmplx1_Nad11 67.3 17 0.00037 36.9 7.1 50 329-378 141-193 (375)
124 PRK05654 acetyl-CoA carboxylas 67.2 17 0.00037 36.4 6.9 23 347-369 143-165 (292)
125 cd02758 MopB_Tetrathionate-Ra 66.8 9.5 0.00021 42.8 5.6 55 328-382 206-269 (735)
126 TIGR01701 Fdhalpha-like oxidor 66.6 15 0.00033 41.3 7.1 44 329-372 194-239 (743)
127 cd02068 radical_SAM_B12_BD B12 65.7 35 0.00076 28.9 7.8 65 332-396 38-110 (127)
128 PRK12496 hypothetical protein; 65.4 4.5 9.6E-05 37.0 2.2 11 232-242 128-138 (164)
129 TIGR00515 accD acetyl-CoA carb 65.1 38 0.00082 33.8 8.8 21 347-367 142-162 (285)
130 cd00729 rubredoxin_SM Rubredox 65.1 6.9 0.00015 26.3 2.5 12 231-242 2-13 (34)
131 TIGR01973 NuoG NADH-quinone ox 64.8 15 0.00032 40.1 6.5 54 328-381 357-413 (603)
132 PRK15488 thiosulfate reductase 64.7 11 0.00023 42.2 5.5 54 330-383 193-250 (759)
133 cd02772 MopB_NDH-1_NuoG2 MopB_ 64.5 19 0.00041 36.9 6.9 44 329-372 148-193 (414)
134 cd02760 MopB_Phenylacetyl-CoA- 64.2 16 0.00034 41.3 6.6 57 328-384 168-227 (760)
135 cd02769 MopB_DMSOR-BSOR-TMAOR 63.6 13 0.00027 40.7 5.6 49 330-378 167-226 (609)
136 smart00531 TFIIE Transcription 62.9 3.6 7.9E-05 36.7 1.1 13 231-243 99-111 (147)
137 TIGR00354 polC DNA polymerase, 62.7 3.8 8.2E-05 46.8 1.4 20 224-243 1000-1024(1095)
138 COG0777 AccD Acetyl-CoA carbox 62.3 35 0.00075 34.0 7.8 16 357-372 192-207 (294)
139 PF04016 DUF364: Domain of unk 61.9 16 0.00036 32.5 5.2 70 326-396 55-132 (147)
140 PF09538 FYDLN_acid: Protein o 61.9 5.4 0.00012 34.1 1.9 13 299-311 27-39 (108)
141 PRK06450 threonine synthase; V 61.7 5.1 0.00011 40.6 2.1 12 231-242 3-14 (338)
142 PF05191 ADK_lid: Adenylate ki 61.5 7.7 0.00017 26.6 2.3 12 232-243 2-13 (36)
143 PRK07860 NADH dehydrogenase su 61.4 18 0.00039 41.0 6.5 54 328-381 371-428 (797)
144 cd05006 SIS_GmhA Phosphoheptos 60.9 29 0.00062 31.3 6.7 54 330-383 98-152 (177)
145 cd00350 rubredoxin_like Rubred 60.3 8.7 0.00019 25.5 2.4 11 232-242 2-12 (33)
146 PRK05580 primosome assembly pr 60.0 17 0.00037 40.4 6.0 15 226-240 376-390 (679)
147 cd00730 rubredoxin Rubredoxin; 59.9 8.1 0.00017 28.5 2.3 12 232-243 2-13 (50)
148 PRK03681 hypA hydrogenase nick 59.7 7 0.00015 33.5 2.3 20 223-242 62-81 (114)
149 TIGR00441 gmhA phosphoheptose 59.0 46 0.00099 29.5 7.5 52 331-382 77-129 (154)
150 TIGR02300 FYDLN_acid conserved 58.5 7 0.00015 34.4 2.1 14 298-311 26-39 (129)
151 TIGR03127 RuMP_HxlB 6-phospho 58.4 17 0.00037 32.8 4.8 52 330-381 69-121 (179)
152 cd05710 SIS_1 A subgroup of th 58.2 22 0.00047 30.1 5.1 57 330-386 44-101 (120)
153 PRK13938 phosphoheptose isomer 58.1 33 0.00072 32.1 6.7 54 329-382 109-163 (196)
154 TIGR00595 priA primosomal prot 58.0 21 0.00045 38.3 6.0 9 298-306 253-261 (505)
155 PF13240 zinc_ribbon_2: zinc-r 58.0 5.2 0.00011 24.7 0.9 8 300-307 15-22 (23)
156 PRK14873 primosome assembly pr 57.9 31 0.00067 38.4 7.4 43 189-239 357-400 (665)
157 PRK12380 hydrogenase nickel in 57.8 8 0.00017 33.1 2.3 20 223-242 62-81 (113)
158 PRK04023 DNA polymerase II lar 57.8 5.1 0.00011 46.0 1.4 33 299-334 1054-1086(1121)
159 cd02757 MopB_Arsenate-R This C 57.5 21 0.00044 38.3 5.9 54 330-383 159-216 (523)
160 cd02751 MopB_DMSOR-like The Mo 57.4 28 0.00061 37.9 7.0 50 333-382 169-229 (609)
161 TIGR02026 BchE magnesium-proto 57.4 31 0.00067 36.8 7.2 63 333-395 63-134 (497)
162 PF02591 DUF164: Putative zinc 57.1 8.9 0.00019 28.4 2.2 20 223-246 18-37 (56)
163 PRK14714 DNA polymerase II lar 56.8 5.4 0.00012 46.8 1.4 20 224-243 1241-1265(1337)
164 PLN02980 2-oxoglutarate decarb 56.7 22 0.00048 43.6 6.6 63 330-394 595-659 (1655)
165 COG1773 Rubredoxin [Energy pro 56.6 13 0.00027 28.1 2.9 14 230-243 2-15 (55)
166 cd05008 SIS_GlmS_GlmD_1 SIS (S 56.5 24 0.00051 29.5 5.0 56 330-385 43-99 (126)
167 COG1579 Zn-ribbon protein, pos 56.4 7 0.00015 38.0 1.9 12 297-308 220-231 (239)
168 PF00301 Rubredoxin: Rubredoxi 55.9 9.9 0.00022 27.6 2.2 13 231-243 1-13 (47)
169 PRK04940 hypothetical protein; 55.6 34 0.00074 31.8 6.3 62 309-373 26-95 (180)
170 cd05013 SIS_RpiR RpiR-like pro 55.2 42 0.00091 27.9 6.4 56 330-385 57-113 (139)
171 cd02774 MopB_Res-Cmplx1_Nad11- 55.1 26 0.00056 36.0 5.9 44 327-370 142-188 (366)
172 TIGR02166 dmsA_ynfE anaerobic 54.9 24 0.00051 39.7 6.1 54 329-382 210-270 (797)
173 COG2331 Uncharacterized protei 54.8 6.1 0.00013 31.7 1.0 21 298-318 33-58 (82)
174 COG1379 PHP family phosphoeste 54.2 2.6 5.6E-05 42.6 -1.4 18 225-242 240-257 (403)
175 smart00659 RPOLCX RNA polymera 54.0 11 0.00024 26.9 2.2 10 298-307 19-28 (44)
176 COG3961 Pyruvate decarboxylase 52.9 9 0.0002 41.1 2.2 85 308-396 243-335 (557)
177 PRK14990 anaerobic dimethyl su 52.8 34 0.00073 38.7 6.9 57 328-384 226-289 (814)
178 PF13580 SIS_2: SIS domain; PD 52.7 36 0.00079 29.6 5.7 42 325-366 93-136 (138)
179 PRK00414 gmhA phosphoheptose i 52.7 48 0.001 30.7 6.9 54 330-383 108-162 (192)
180 COG0761 lytB 4-Hydroxy-3-methy 51.6 35 0.00075 34.1 5.9 72 324-396 203-285 (294)
181 PRK09129 NADH dehydrogenase su 51.4 45 0.00097 37.5 7.6 46 328-373 365-412 (776)
182 PRK13532 nitrate reductase cat 51.2 28 0.00062 39.5 6.0 54 329-382 202-259 (830)
183 COG1867 TRM1 N2,N2-dimethylgua 51.1 26 0.00057 36.2 5.1 90 299-394 258-375 (380)
184 COG1198 PriA Primosomal protei 50.4 61 0.0013 36.6 8.2 17 299-318 476-492 (730)
185 PRK12775 putative trifunctiona 50.3 9.9 0.00021 44.2 2.2 13 299-311 839-851 (1006)
186 PRK08493 NADH dehydrogenase su 49.7 56 0.0012 37.3 7.9 47 327-373 364-413 (819)
187 PRK15482 transcriptional regul 49.7 43 0.00093 32.6 6.3 57 329-385 178-235 (285)
188 PRK03824 hypA hydrogenase nick 49.5 13 0.00029 32.8 2.4 21 223-243 62-82 (135)
189 COG1439 Predicted nucleic acid 49.2 12 0.00025 34.8 2.0 11 232-242 140-150 (177)
190 cd02761 MopB_FmdB-FwdB The Mop 48.2 25 0.00053 35.9 4.5 51 332-382 130-190 (415)
191 TIGR01706 NAPA periplasmic nit 47.6 33 0.00072 39.0 5.8 54 329-382 202-259 (830)
192 PRK14715 DNA polymerase II lar 47.5 9.3 0.0002 45.2 1.4 34 299-335 1558-1591(1627)
193 PF01155 HypA: Hydrogenase exp 47.4 9.9 0.00022 32.4 1.2 21 223-243 62-82 (113)
194 PF10571 UPF0547: Uncharacteri 47.3 12 0.00026 23.8 1.3 9 299-307 15-23 (26)
195 COG1592 Rubrerythrin [Energy p 46.9 14 0.0003 34.0 2.2 11 231-241 134-144 (166)
196 COG2051 RPS27A Ribosomal prote 46.1 13 0.00029 29.0 1.6 17 224-240 12-28 (67)
197 TIGR00100 hypA hydrogenase nic 45.7 17 0.00036 31.2 2.4 20 223-242 62-81 (115)
198 COG0028 IlvB Thiamine pyrophos 45.3 27 0.00059 37.9 4.5 28 110-137 188-215 (550)
199 COG1110 Reverse gyrase [DNA re 45.2 23 0.00049 41.2 3.9 39 299-346 709-747 (1187)
200 TIGR01580 narG respiratory nit 45.0 37 0.00081 40.3 5.7 60 330-389 242-305 (1235)
201 COG1737 RpiR Transcriptional r 44.6 63 0.0014 31.7 6.6 73 308-383 155-228 (281)
202 PF12172 DUF35_N: Rubredoxin-l 44.4 15 0.00033 24.7 1.6 16 226-241 6-21 (37)
203 PF02401 LYTB: LytB protein; 44.1 62 0.0013 32.2 6.4 46 323-369 199-244 (281)
204 cd05005 SIS_PHI Hexulose-6-pho 43.9 44 0.00096 30.1 5.0 54 330-383 72-126 (179)
205 COG3809 Uncharacterized protei 43.6 12 0.00025 30.3 1.0 10 298-307 21-30 (88)
206 PRK11557 putative DNA-binding 43.1 72 0.0016 30.8 6.7 56 327-382 169-225 (278)
207 PF01475 FUR: Ferric uptake re 42.7 25 0.00055 29.6 3.1 49 187-243 42-92 (120)
208 COG1832 Predicted CoA-binding 42.6 1.8E+02 0.0038 26.2 8.3 69 326-394 8-91 (140)
209 PRK08197 threonine synthase; V 42.4 18 0.00038 37.4 2.4 15 229-243 5-19 (394)
210 PF02310 B12-binding: B12 bind 42.3 61 0.0013 26.8 5.3 82 311-393 30-121 (121)
211 cd04235 AAK_CK AAK_CK: Carbama 41.2 24 0.00053 35.5 3.1 43 98-146 157-199 (308)
212 PF00205 TPP_enzyme_M: Thiamin 41.1 14 0.00031 31.8 1.3 25 112-136 1-25 (137)
213 PRK11337 DNA-binding transcrip 41.0 79 0.0017 30.8 6.7 55 328-382 182-237 (292)
214 PRK11302 DNA-binding transcrip 40.9 93 0.002 30.0 7.1 54 329-382 171-224 (284)
215 COG1996 RPC10 DNA-directed RNA 40.7 16 0.00034 26.9 1.2 11 231-241 6-16 (49)
216 PF11071 DUF2872: Protein of u 40.4 66 0.0014 28.7 5.2 94 299-392 35-136 (141)
217 PRK09130 NADH dehydrogenase su 40.3 86 0.0019 35.0 7.5 45 328-372 359-406 (687)
218 PRK08166 NADH dehydrogenase su 40.1 31 0.00067 39.3 4.1 41 329-369 367-409 (847)
219 cd02764 MopB_PHLH The MopB_PHL 39.9 57 0.0012 34.8 5.9 54 330-383 193-256 (524)
220 PF14169 YdjO: Cold-inducible 39.5 21 0.00045 27.3 1.8 18 297-314 38-55 (59)
221 TIGR03129 one_C_dehyd_B formyl 39.4 53 0.0011 33.4 5.3 51 332-382 136-196 (421)
222 PF09151 DUF1936: Domain of un 39.0 12 0.00026 25.0 0.3 11 300-310 3-14 (36)
223 cd04795 SIS SIS domain. SIS (S 38.8 62 0.0013 24.8 4.6 38 329-366 43-80 (87)
224 PRK13371 4-hydroxy-3-methylbut 38.3 1.7E+02 0.0036 30.6 8.7 91 311-402 263-385 (387)
225 COG0243 BisC Anaerobic dehydro 37.8 32 0.00068 38.6 3.7 50 330-379 196-250 (765)
226 TIGR00216 ispH_lytB (E)-4-hydr 37.6 89 0.0019 31.1 6.4 47 322-369 197-243 (280)
227 TIGR00375 conserved hypothetic 37.5 14 0.00031 38.2 0.8 17 226-242 235-251 (374)
228 PRK11788 tetratricopeptide rep 36.9 22 0.00047 35.4 2.0 19 298-316 368-388 (389)
229 TIGR03646 YtoQ_fam YtoQ family 36.3 93 0.002 27.8 5.5 73 299-371 38-114 (144)
230 PF03604 DNA_RNApol_7kD: DNA d 36.2 30 0.00065 23.1 1.9 10 298-307 17-26 (32)
231 PRK00945 acetyl-CoA decarbonyl 35.9 89 0.0019 28.9 5.7 23 112-134 24-46 (171)
232 PRK05638 threonine synthase; V 35.8 21 0.00045 37.5 1.7 12 231-242 1-12 (442)
233 PRK14717 putative glycine/sarc 35.6 43 0.00093 28.3 3.2 37 109-146 6-51 (107)
234 PRK02947 hypothetical protein; 35.3 81 0.0018 30.4 5.6 53 330-382 103-167 (246)
235 PRK09444 pntB pyridine nucleot 34.6 51 0.0011 35.0 4.3 85 310-395 355-461 (462)
236 PRK00762 hypA hydrogenase nick 34.2 30 0.00064 30.1 2.2 19 223-242 62-80 (124)
237 PRK05452 anaerobic nitric oxid 34.2 38 0.00082 36.1 3.4 21 223-243 417-437 (479)
238 cd05005 SIS_PHI Hexulose-6-pho 34.0 2.3E+02 0.0051 25.3 8.2 76 317-392 16-95 (179)
239 PF13289 SIR2_2: SIR2-like dom 33.9 1.9E+02 0.0041 24.3 7.2 48 324-371 76-127 (143)
240 PF04413 Glycos_transf_N: 3-De 33.8 48 0.001 30.6 3.6 33 333-369 95-127 (186)
241 PF01380 SIS: SIS domain SIS d 33.7 63 0.0014 26.8 4.1 54 329-382 49-103 (131)
242 PF13248 zf-ribbon_3: zinc-rib 33.3 21 0.00046 22.4 0.8 9 299-307 17-25 (26)
243 TIGR00274 N-acetylmuramic acid 33.3 80 0.0017 31.4 5.3 53 331-383 124-177 (291)
244 COG0549 ArcC Carbamate kinase 33.1 56 0.0012 32.8 4.1 86 99-222 161-246 (312)
245 PLN02569 threonine synthase 33.0 23 0.0005 37.9 1.5 13 231-243 49-61 (484)
246 PRK10886 DnaA initiator-associ 32.9 1E+02 0.0022 28.9 5.6 53 329-381 105-161 (196)
247 PF05728 UPF0227: Uncharacteri 32.8 83 0.0018 29.2 5.1 49 320-371 42-92 (187)
248 TIGR00853 pts-lac PTS system, 32.8 20 0.00044 29.6 0.9 16 121-136 2-17 (95)
249 COG3142 CutC Uncharacterized p 32.5 45 0.00097 32.4 3.2 31 107-137 153-184 (241)
250 COG1545 Predicted nucleic-acid 32.5 38 0.00083 30.1 2.6 15 227-241 25-39 (140)
251 PF13289 SIR2_2: SIR2-like dom 31.5 26 0.00056 29.8 1.4 14 205-218 2-15 (143)
252 PRK12360 4-hydroxy-3-methylbut 31.5 1.2E+02 0.0025 30.3 6.1 76 310-386 184-265 (281)
253 PRK05441 murQ N-acetylmuramic 31.3 1.9E+02 0.0042 28.8 7.7 54 331-384 129-183 (299)
254 PRK13936 phosphoheptose isomer 31.2 1.2E+02 0.0027 28.0 5.9 55 330-384 108-166 (197)
255 COG3357 Predicted transcriptio 31.0 21 0.00046 29.7 0.6 12 231-242 58-69 (97)
256 COG1066 Sms Predicted ATP-depe 30.7 31 0.00067 36.4 2.0 12 231-242 7-18 (456)
257 PRK12474 hypothetical protein; 30.7 69 0.0015 34.1 4.7 58 326-396 259-319 (518)
258 cd05017 SIS_PGI_PMI_1 The memb 30.7 87 0.0019 26.2 4.5 38 330-367 40-77 (119)
259 cd02771 MopB_NDH-1_NuoG2-N7 Mo 30.7 64 0.0014 33.7 4.4 31 329-359 141-174 (472)
260 COG2176 PolC DNA polymerase II 30.4 34 0.00074 40.4 2.4 22 110-131 716-737 (1444)
261 COG4821 Uncharacterized protei 30.2 91 0.002 29.9 4.8 38 330-367 101-138 (243)
262 PRK07524 hypothetical protein; 30.1 49 0.0011 35.3 3.5 28 107-134 186-213 (535)
263 PF01396 zf-C4_Topoisom: Topoi 29.8 26 0.00057 24.2 0.9 12 300-311 3-14 (39)
264 cd05007 SIS_Etherase N-acetylm 29.5 98 0.0021 30.1 5.2 52 331-382 116-168 (257)
265 CHL00099 ilvB acetohydroxyacid 29.4 59 0.0013 35.3 3.9 29 106-134 201-229 (585)
266 PRK01045 ispH 4-hydroxy-3-meth 29.0 1.4E+02 0.003 30.0 6.2 63 322-385 199-265 (298)
267 PRK00945 acetyl-CoA decarbonyl 29.0 57 0.0012 30.1 3.2 24 111-134 51-74 (171)
268 PRK07418 acetolactate synthase 28.9 61 0.0013 35.4 4.0 29 106-134 208-236 (616)
269 KOG1532 GTPase XAB1, interacts 28.7 72 0.0016 32.2 4.0 41 332-372 17-59 (366)
270 TIGR03127 RuMP_HxlB 6-phospho 28.7 2.9E+02 0.0063 24.6 7.9 50 318-367 14-63 (179)
271 PRK12570 N-acetylmuramic acid- 28.6 1.8E+02 0.0039 29.0 6.9 52 331-382 125-177 (296)
272 PRK09259 putative oxalyl-CoA d 28.5 65 0.0014 34.8 4.1 28 107-134 198-225 (569)
273 TIGR00393 kpsF KpsF/GutQ famil 28.5 1.5E+02 0.0032 28.3 6.2 54 330-383 44-98 (268)
274 TIGR02720 pyruv_oxi_spxB pyruv 28.4 65 0.0014 34.9 4.1 28 107-134 185-212 (575)
275 PRK09590 celB cellobiose phosp 28.4 26 0.00056 29.6 0.8 14 123-136 2-15 (104)
276 PRK08273 thiamine pyrophosphat 27.9 60 0.0013 35.4 3.7 28 107-134 193-220 (597)
277 PRK08329 threonine synthase; V 27.9 29 0.00063 35.2 1.2 11 232-242 2-12 (347)
278 TIGR02418 acolac_catab acetola 27.9 73 0.0016 34.0 4.3 29 107-135 180-208 (539)
279 TIGR00354 polC DNA polymerase, 27.8 62 0.0013 37.5 3.8 36 299-335 638-674 (1095)
280 PRK06154 hypothetical protein; 27.8 72 0.0016 34.5 4.3 31 106-136 198-228 (565)
281 PF09986 DUF2225: Uncharacteri 27.7 28 0.0006 33.1 0.9 15 231-245 5-19 (214)
282 PRK07586 hypothetical protein; 27.4 72 0.0016 33.9 4.1 30 106-135 181-210 (514)
283 PRK14715 DNA polymerase II lar 27.4 59 0.0013 38.9 3.6 37 299-335 687-723 (1627)
284 PRK11543 gutQ D-arabinose 5-ph 27.3 1.2E+02 0.0025 29.9 5.4 54 330-383 86-140 (321)
285 TIGR02164 torA trimethylamine- 27.1 1.1E+02 0.0024 34.7 5.7 50 331-380 208-272 (822)
286 PF03447 NAD_binding_3: Homose 27.1 80 0.0017 26.3 3.6 36 333-371 59-94 (117)
287 PF02233 PNTB: NAD(P) transhyd 27.1 73 0.0016 34.0 4.0 85 310-395 356-462 (463)
288 PRK09462 fur ferric uptake reg 27.0 86 0.0019 27.6 3.9 52 184-243 49-102 (148)
289 PRK00415 rps27e 30S ribosomal 26.8 51 0.0011 25.2 2.1 16 225-240 5-20 (59)
290 PRK09107 acetolactate synthase 26.8 70 0.0015 34.8 4.0 29 107-135 197-225 (595)
291 PF13380 CoA_binding_2: CoA bi 26.8 3.6E+02 0.0078 22.7 7.6 36 337-372 3-39 (116)
292 KOG3954 Electron transfer flav 26.4 74 0.0016 31.7 3.6 58 335-397 276-334 (336)
293 PRK11382 frlB fructoselysine-6 26.3 1E+02 0.0023 31.0 4.9 56 331-386 90-146 (340)
294 TIGR00315 cdhB CO dehydrogenas 26.2 1.9E+02 0.0041 26.4 6.1 23 112-134 17-39 (162)
295 PRK07789 acetolactate synthase 26.1 74 0.0016 34.7 4.0 29 107-135 216-244 (612)
296 PRK06965 acetolactate synthase 26.1 71 0.0015 34.7 3.8 29 107-135 206-234 (587)
297 PF07191 zinc-ribbons_6: zinc- 25.9 29 0.00063 27.5 0.6 10 298-307 30-39 (70)
298 PRK10892 D-arabinose 5-phospha 25.8 1.5E+02 0.0032 29.4 5.8 54 330-383 91-145 (326)
299 PRK08617 acetolactate synthase 25.7 80 0.0017 33.9 4.1 28 107-134 186-213 (552)
300 COG1029 FwdB Formylmethanofura 25.7 1.2E+02 0.0025 31.7 4.9 73 309-383 306-382 (429)
301 PRK07979 acetolactate synthase 25.6 71 0.0015 34.5 3.7 30 107-136 191-220 (574)
302 PF02302 PTS_IIB: PTS system, 25.5 33 0.00072 27.0 0.9 13 124-136 1-13 (90)
303 PRK13265 glycine/sarcosine/bet 25.5 76 0.0016 28.5 3.2 41 105-146 51-100 (154)
304 COG3091 SprT Zn-dependent meta 25.4 18 0.00039 32.8 -0.7 53 189-242 69-127 (156)
305 PF14803 Nudix_N_2: Nudix N-te 25.3 25 0.00055 23.8 0.1 14 300-313 2-15 (34)
306 cd02065 B12-binding_like B12 b 25.2 1.9E+02 0.0041 23.7 5.6 83 311-394 29-116 (125)
307 PRK07282 acetolactate synthase 25.1 77 0.0017 34.3 3.9 29 107-135 195-223 (566)
308 KOG4718 Non-SMC (structural ma 25.0 89 0.0019 30.0 3.7 21 183-203 132-152 (235)
309 PF10083 DUF2321: Uncharacteri 25.0 24 0.00053 32.1 0.0 10 231-240 28-37 (158)
310 TIGR03457 sulphoacet_xsc sulfo 24.9 77 0.0017 34.3 3.8 29 107-135 181-209 (579)
311 PF04606 Ogr_Delta: Ogr/Delta- 24.8 33 0.00072 24.6 0.7 10 300-309 1-10 (47)
312 TIGR00315 cdhB CO dehydrogenas 24.8 67 0.0015 29.3 2.9 41 327-369 91-135 (162)
313 PRK06725 acetolactate synthase 24.7 84 0.0018 34.1 4.1 30 107-136 199-228 (570)
314 PF10263 SprT-like: SprT-like 24.7 46 0.001 29.2 1.8 16 228-243 120-135 (157)
315 TIGR01504 glyox_carbo_lig glyo 24.6 77 0.0017 34.5 3.8 29 107-135 187-215 (588)
316 PF10087 DUF2325: Uncharacteri 24.6 1.9E+02 0.004 23.5 5.3 41 326-367 41-82 (97)
317 PRK00448 polC DNA polymerase I 24.5 44 0.00096 40.5 2.0 13 300-312 935-947 (1437)
318 PRK07064 hypothetical protein; 24.4 84 0.0018 33.6 4.0 28 107-134 188-215 (544)
319 PRK15102 trimethylamine N-oxid 24.4 1.2E+02 0.0026 34.4 5.4 59 331-389 211-286 (825)
320 cd07153 Fur_like Ferric uptake 24.3 73 0.0016 26.4 2.8 51 184-242 32-84 (116)
321 COG0313 Predicted methyltransf 24.3 2.4E+02 0.0053 28.1 6.8 56 312-367 55-113 (275)
322 PF02150 RNA_POL_M_15KD: RNA p 24.0 27 0.00059 23.6 0.1 13 300-312 3-15 (35)
323 PF08274 PhnA_Zn_Ribbon: PhnA 23.9 33 0.00072 22.6 0.5 10 298-307 2-11 (30)
324 COG1440 CelA Phosphotransferas 23.9 44 0.00096 28.3 1.4 10 358-367 71-80 (102)
325 COG1933 Archaeal DNA polymeras 23.8 30 0.00066 33.7 0.4 10 297-306 182-191 (253)
326 PRK08978 acetolactate synthase 23.7 90 0.002 33.4 4.1 28 107-134 181-208 (548)
327 PLN02929 NADH kinase 23.7 96 0.0021 31.2 3.9 60 330-394 61-136 (301)
328 PRK11269 glyoxylate carboligas 23.5 82 0.0018 34.2 3.7 29 107-135 188-216 (591)
329 PLN02470 acetolactate synthase 23.4 80 0.0017 34.3 3.6 28 107-134 200-227 (585)
330 cd05564 PTS_IIB_chitobiose_lic 23.4 39 0.00085 27.8 1.0 13 124-136 1-13 (96)
331 PRK08327 acetolactate synthase 23.3 94 0.002 33.6 4.2 29 107-135 205-233 (569)
332 PF06906 DUF1272: Protein of u 23.3 41 0.00089 25.5 0.9 12 299-310 42-53 (57)
333 PF01286 XPA_N: XPA protein N- 23.3 70 0.0015 21.8 2.0 14 292-305 18-31 (34)
334 PRK06112 acetolactate synthase 23.2 83 0.0018 34.0 3.7 28 107-134 198-225 (578)
335 PRK08527 acetolactate synthase 23.2 89 0.0019 33.7 3.9 30 107-136 188-217 (563)
336 PF09297 zf-NADH-PPase: NADH p 23.1 29 0.00063 22.7 0.1 13 299-311 4-16 (32)
337 TIGR01206 lysW lysine biosynth 23.1 41 0.00089 25.2 0.9 12 298-309 22-33 (54)
338 PRK07092 benzoylformate decarb 23.0 94 0.002 33.2 4.0 28 107-134 191-218 (530)
339 PRK08979 acetolactate synthase 23.0 87 0.0019 33.9 3.8 27 108-134 192-218 (572)
340 PRK14991 tetrathionate reducta 22.6 1.6E+02 0.0034 34.7 6.0 45 329-373 281-331 (1031)
341 COG1282 PntB NAD/NADP transhyd 22.2 1.4E+02 0.003 31.2 4.7 86 309-395 356-462 (463)
342 PRK08322 acetolactate synthase 22.2 1.1E+02 0.0023 32.8 4.2 28 107-134 181-208 (547)
343 PRK12474 hypothetical protein; 21.9 96 0.0021 33.1 3.8 28 107-134 186-213 (518)
344 PRK14101 bifunctional glucokin 21.9 2.2E+02 0.0047 31.3 6.7 55 329-383 511-565 (638)
345 COG1675 TFA1 Transcription ini 21.8 48 0.001 30.8 1.3 11 299-309 133-143 (176)
346 cd06300 PBP1_ABC_sugar_binding 21.8 6.4E+02 0.014 23.3 9.8 59 310-370 35-95 (272)
347 PRK06456 acetolactate synthase 21.6 1.1E+02 0.0024 33.0 4.2 28 107-134 192-219 (572)
348 cd06292 PBP1_LacI_like_10 Liga 21.4 5.3E+02 0.011 23.8 8.5 38 333-370 55-93 (273)
349 PRK08199 thiamine pyrophosphat 21.4 1.1E+02 0.0024 32.9 4.2 28 107-134 189-216 (557)
350 TIGR03254 oxalate_oxc oxalyl-C 21.4 90 0.0019 33.5 3.5 29 107-135 191-219 (554)
351 COG0498 ThrC Threonine synthas 21.3 69 0.0015 33.7 2.5 54 336-391 127-189 (411)
352 PF03029 ATP_bind_1: Conserved 21.3 1E+02 0.0022 29.6 3.6 45 339-383 1-49 (238)
353 PRK10499 PTS system N,N'-diace 21.2 49 0.0011 27.9 1.1 14 123-136 4-17 (106)
354 TIGR00595 priA primosomal prot 21.2 54 0.0012 35.2 1.7 13 297-309 239-251 (505)
355 PRK14559 putative protein seri 21.2 76 0.0016 35.3 2.9 10 232-241 2-11 (645)
356 TIGR00173 menD 2-succinyl-5-en 21.0 1.1E+02 0.0023 31.9 3.8 39 107-145 196-245 (432)
357 PF00070 Pyr_redox: Pyridine n 21.0 2.5E+02 0.0055 21.5 5.2 54 337-398 2-55 (80)
358 PRK07525 sulfoacetaldehyde ace 20.9 99 0.0021 33.6 3.7 28 107-134 185-212 (588)
359 PRK08155 acetolactate synthase 20.8 1E+02 0.0022 33.1 3.8 29 107-135 196-224 (564)
360 PF04475 DUF555: Protein of un 20.8 64 0.0014 27.3 1.7 19 298-316 47-65 (102)
361 PRK05978 hypothetical protein; 20.8 51 0.0011 29.8 1.2 21 297-317 51-71 (148)
362 TIGR00155 pqiA_fam integral me 20.7 60 0.0013 33.9 1.9 11 298-308 33-43 (403)
363 cd06281 PBP1_LacI_like_5 Ligan 20.5 5.1E+02 0.011 23.9 8.1 35 333-370 55-89 (269)
364 PRK07710 acetolactate synthase 20.5 97 0.0021 33.5 3.5 28 107-134 200-227 (571)
365 PRK08611 pyruvate oxidase; Pro 20.4 1.2E+02 0.0026 32.9 4.2 28 107-134 188-215 (576)
366 TIGR00118 acolac_lg acetolacta 20.3 1E+02 0.0022 33.2 3.6 27 108-134 187-213 (558)
367 PRK06276 acetolactate synthase 20.3 1.1E+02 0.0023 33.3 3.8 28 107-134 188-215 (586)
368 PF14353 CpXC: CpXC protein 20.3 57 0.0012 28.0 1.4 18 225-242 32-49 (128)
369 TIGR00746 arcC carbamate kinas 20.2 99 0.0021 31.2 3.3 43 99-147 159-201 (310)
370 cd06270 PBP1_GalS_like Ligand 20.1 5.9E+02 0.013 23.4 8.5 35 332-370 54-88 (268)
371 PRK05858 hypothetical protein; 20.1 1.3E+02 0.0029 32.2 4.4 28 107-134 188-215 (542)
No 1
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.3e-74 Score=537.50 Aligned_cols=297 Identities=60% Similarity=1.014 Sum_probs=283.5
Q ss_pred CCCCCCcCCCCchhcccCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeCCCCCccCCCCCcCCCC-Cccc-CCCCCcCh
Q 015613 81 SSRHEDKAPASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPN-GAYS-SGFKPITH 158 (403)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~-Gly~-~~~~p~~~ 158 (403)
+++|+.+.+ .+.+..++.+|+++++.++++.+|..+|..+++++|+|||||||+||||||||++ |+|. ..++|+.+
T Consensus 6 ~l~~~s~~p--~s~~~~~k~VP~~~pl~e~~ikkl~~li~~~~rllvlTGAGISTEsGIPDYRS~~VGlYars~~kPI~h 83 (305)
T KOG2683|consen 6 SLGNESKAP--PSFLMARKYVPHADPLCEEDIKKLYRLIGTSDRLLVLTGAGISTESGIPDYRSEDVGLYARSAHKPIQH 83 (305)
T ss_pred ccccCCCCC--chhhhhccccCCCCCCCHHHHHHHHHHHccCCceEEEecCcccccCCCCcccCCCccceeecCCCcchH
Confidence 688888877 7777888999999999999999999999999999999999999999999999999 9998 57899999
Q ss_pred HHHhhChhHHHHHHHHHHhhhhccccCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCC
Q 015613 159 QQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDC 237 (403)
Q Consensus 159 ~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C 237 (403)
++|.++...+++||+|.|.+|++|..++||++|++|+.||+.|+++++||||||+||.|||++. .|+||+.+.+.|.+|
T Consensus 84 qdf~rSs~~RqRYWaRnf~gWprFs~aqPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS~~~tElHG~~~~VkCl~C 163 (305)
T KOG2683|consen 84 QDFVRSSRCRQRYWARNFVGWPRFSAAQPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAGSRMVTELHGSAYQVKCLSC 163 (305)
T ss_pred HHHhhhhHHHHHHHHHhhcCcchhhhcCCCchhHHHHHHhhcCceEEEeeccchhhhhhccccceeeeccceEEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred CcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCC
Q 015613 238 GFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGD 317 (403)
Q Consensus 238 ~~~~~~~~~~~~l~~~~p~~~~~~~~l~~g~p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE 317 (403)
++..+|+.+|++|..+||.|.++....+ +++||+|++++.++ +..+.+|.|++|||.|||+|+||||
T Consensus 164 ~y~~~R~~~Qdrl~~~NP~fke~~~~~~------------~~~pDgDv~lpl~~-e~gF~IPeC~~CgG~lKpdV~fFGd 230 (305)
T KOG2683|consen 164 GYIEPRQTFQDRLKYLNPGFKEAIVSPG------------HQRPDGDVELPLEF-EEGFQIPECEKCGGLLKPDVTFFGD 230 (305)
T ss_pred CcccchHHHHHHHHhcCcchhhhccCcc------------ccCCCCCeecchhh-hhcccCCcccccCCccCCceEEecC
Confidence 9999999999999999999998764322 48899999999986 7789999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHH
Q 015613 318 NVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRV 392 (403)
Q Consensus 318 ~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L 392 (403)
+++.+..+.+.+.+++||-+||+||||+|++.++++.+++..+.++.|||+++|+.|+.+.++|+.+|+|||+++
T Consensus 231 nvn~dkv~~~~~~v~e~dg~LvlGsSL~v~Sg~r~i~~a~~~k~pi~IvNIGpTRaD~~a~lKl~~r~gdvl~~~ 305 (305)
T KOG2683|consen 231 NVNKDKVTFCMEKVKECDGFLVLGSSLMVLSGFRFIRHAHEKKKPIAIVNIGPTRADDMATLKLNYRIGEVLKEM 305 (305)
T ss_pred CCChHHHHHHHHHHhccCceEEechhHHHHHHHHHHHHHHhhcCcEEEEecCCcchhheeeeeecchHhhhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999864
No 2
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=1.7e-65 Score=496.28 Aligned_cols=259 Identities=60% Similarity=0.991 Sum_probs=230.2
Q ss_pred HHHHHHcCCcEEEEeCCCCCccCCCCCcCCCCCcccCCCCCcChHHHhhChhHHHHHHHHHHhhhhccccCCCCHHHHHH
Q 015613 115 LYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFAL 194 (403)
Q Consensus 115 l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~p~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn~~H~~L 194 (403)
|+++|++|++|||+|||||||+||||||||++|+|...+.+++++.|..+|..+|.||.+.+..+..+..++||.+|++|
T Consensus 1 ~~~~l~~sk~ivvlTGAGiSt~SGIPdFR~~~Glw~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~Pn~~H~~l 80 (260)
T cd01409 1 LQDFVARSRRLLVLTGAGISTESGIPDYRSEGGLYSRTFRPMTHQEFMRSPAARQRYWARSFVGWPRFSAAQPNAAHRAL 80 (260)
T ss_pred ChHHHhcCCCEEEEeCceeehhhCCCCCCCcCCcccCCCCCCCHHHHHhCcHHHHHHHHHHHhhhhhhccCCCCHHHHHH
Confidence 46789999999999999999999999999999999865778899999999999999998777666667789999999999
Q ss_pred HHHHHhCCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCC
Q 015613 195 ASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDR 273 (403)
Q Consensus 195 a~L~~~gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~~g~p~~~~ 273 (403)
++|+++|++.+||||||||||++||+++ +|+||+++.++|.+|++.++++.+.+.+...+|.|.+...
T Consensus 81 a~L~~~g~~~~viTQNIDgLh~~aG~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~----------- 149 (260)
T cd01409 81 AALEAAGRLHGLITQNVDGLHTKAGSRNVVELHGSLHRVVCLSCGFRTPRAELQDRLEALNPGFAEQAA----------- 149 (260)
T ss_pred HHHHHcCCCeeEEeeccchhHHHcCCCCEEEEeeecCEEEeCCCcCccCHHHHHHHHhhcCcchhhhhc-----------
Confidence 9999999999999999999999999988 9999999999999999999988888888777887754320
Q ss_pred CcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHH
Q 015613 274 SFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLV 353 (403)
Q Consensus 274 ~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv 353 (403)
...|++|..++.+. .....+|+||.|||+|||+||||||.+|.+.++++.+++++||++|||||||.|+|+..++
T Consensus 150 ----~~~~~~~~~~~~~~-~~~~~~p~C~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~ 224 (260)
T cd01409 150 ----GQAPDGDVDLEDEQ-VAGFRVPECERCGGVLKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFV 224 (260)
T ss_pred ----ccCCCcccccchhh-cccCCCCCCCCCCCEECCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHH
Confidence 13345555443321 1233589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHH
Q 015613 354 RAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 389 (403)
Q Consensus 354 ~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL 389 (403)
..+.++|+++|+||+++|+.|..+++.|+++++++|
T Consensus 225 ~~a~~~g~~viiIN~~~t~~d~~a~~~i~~~~~~~l 260 (260)
T cd01409 225 LAAAEAGLPIAIVNIGPTRADHLATLKVDARCGEVL 260 (260)
T ss_pred HHHHHCCCcEEEEcCCCCCCCccccEEEeCChhhhC
Confidence 999999999999999999999999999999999986
No 3
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=3.7e-63 Score=485.83 Aligned_cols=274 Identities=47% Similarity=0.785 Sum_probs=239.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCccCCCCCcCCCCCcccCCCCCcChHHHhhChhHHHHHHHHHHhhhhccccCCCC
Q 015613 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPN 188 (403)
Q Consensus 109 ~~~l~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~p~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn 188 (403)
..+++.++++|+++++|||+|||||||+||||||||++|+|.. +.|++.+.|..++..+|.||.+.+..|..+..++||
T Consensus 6 ~~~l~~l~~~i~~~~~ivvlTGAGiS~~SGIPdFR~~~G~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pn 84 (285)
T PRK05333 6 PAALDALQDFVERHPRLFVLTGAGISTDSGIPDYRDRNGQWKR-SPPITYQAFMGSDAARRRYWARSMVGWPVFGRAQPN 84 (285)
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCccccccCCCcccCCCCcccc-CCcccHHHHhcCchhhHHHHHHHHhhchhcccCCCC
Confidence 3578899999999999999999999999999999999999975 677888889888888899998776666667789999
Q ss_pred HHHHHHHHHHHhCCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhcCC
Q 015613 189 PAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYG 267 (403)
Q Consensus 189 ~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~~g 267 (403)
++|++|++|+++|++++||||||||||++||.++ +|+||++..++|.+|++.++++++.+.+...+|.|.+...
T Consensus 85 ~~H~aLa~L~~~g~~~~viTQNIDgLh~rAG~~~ViElHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~----- 159 (285)
T PRK05333 85 AAHHALARLGAAGRIERLVTQNVDGLHQRAGSRDVIELHGRLDGVRCMGCGARHPRAEIQHVLEAANPEWLALEA----- 159 (285)
T ss_pred HHHHHHHHHHHcCCcccEEecccchhHHHcCCCCEEeecCCcCEEEECCCCCcCCHHHHHHHHhhcCcchhhhhc-----
Confidence 9999999999999999999999999999999888 9999999999999999999988877777666676654321
Q ss_pred CCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcchh
Q 015613 268 SPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTM 347 (403)
Q Consensus 268 ~p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~ 347 (403)
++.++++.+.+... .....+|+||.|||+|||+||||||.+|++.++++.++++++|++||||||+.|+
T Consensus 160 ----------~~~~~~~~~~~~~~-~~~~~iP~C~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllvvGTSl~V~ 228 (285)
T PRK05333 160 ----------APAPDGDADLEWAA-FDHFRVPACPACGGILKPDVVFFGENVPRERVAAARAALDAADAVLVVGSSLMVY 228 (285)
T ss_pred ----------ccCCCccccccccc-cccCCCCCCCCCCCcccCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCceec
Confidence 12233444332110 1123589999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhCCCC
Q 015613 348 SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS 399 (403)
Q Consensus 348 p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~~~~ 399 (403)
|++.++..+.++|+++|+||++++..+..+++.|.++++++|++|++.++|+
T Consensus 229 p~~~~~~~a~~~g~~~i~IN~~~t~~~~~~~~~i~g~~~evL~~l~~~l~~~ 280 (285)
T PRK05333 229 SGYRFCVWAAQQGKPIAALNLGRTRADPLLTLKVEASCAQALAALVARLGLA 280 (285)
T ss_pred chhhhHHHHHHCCCeEEEECCCCCCCCcceeEEEeCCHHHHHHHHHHHhCCC
Confidence 9999999998899999999999999999999999999999999999988775
No 4
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=3.8e-61 Score=462.01 Aligned_cols=241 Identities=36% Similarity=0.650 Sum_probs=214.9
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCccCCCCCcCCCCCcccCCCCC-cChHHHhhChhHHHHHHHHHHhhhhccccCCCCHHH
Q 015613 113 NQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP-ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAH 191 (403)
Q Consensus 113 ~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~p-~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn~~H 191 (403)
++++++|++|++|||+||||||++||||||||++|+|+..-.. .+...|..+|..+|.||.+.+. .+.+++||.+|
T Consensus 2 ~~l~~~l~~a~~ivv~tGAGiS~~SGIp~fR~~~gl~~~~~~~~~~~~~~~~~p~~~w~~~~~~~~---~~~~~~Pn~~H 78 (244)
T PRK14138 2 KEFLELLNESRLTVTLTGAGISTPSGIPDFRGPQGIYKKYPQNVFDIDFFYSHPEEFYRFAKEGIF---PMLEAKPNLAH 78 (244)
T ss_pred HHHHHHHHhCCCEEEEECcccchhhCCCCcCCCCCCccCCcccccCHHHHHhCHHHHHHHHHHhhc---ccccCCCCHHH
Confidence 4688999999999999999999999999999999999752122 3677888999988888865332 34579999999
Q ss_pred HHHHHHHHhCCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCC
Q 015613 192 FALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPG 270 (403)
Q Consensus 192 ~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~~g~p~ 270 (403)
++|+.|+++|++.+||||||||||++||.++ +|+||++..++|.+|++.|+.+.+.+.+
T Consensus 79 ~ala~L~~~g~~~~viTQNIDgLh~~aG~~~VielHG~~~~~~C~~C~~~~~~~~~~~~~-------------------- 138 (244)
T PRK14138 79 VLLAKLEEKGLIEAVITQNIDRLHQKAGSKKVIELHGNVEEYYCVRCGKRYTVEDVIEKL-------------------- 138 (244)
T ss_pred HHHHHHHHcCCceEEEeecccChhhHcCCCeEEEccCCcCeeEECCCCCcccHHHHHHHH--------------------
Confidence 9999999999999999999999999999888 9999999999999999998876543211
Q ss_pred CCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcchhhHH
Q 015613 271 SDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAY 350 (403)
Q Consensus 271 ~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~ 350 (403)
....+|+||.|||+|||+||||||.+|+..++++.+++++||++|||||||.|+|+.
T Consensus 139 -----------------------~~~~~p~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~ 195 (244)
T PRK14138 139 -----------------------EKSDVPRCDDCSGLIRPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAA 195 (244)
T ss_pred -----------------------hcCCCCCCCCCCCeECCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHh
Confidence 011479999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhCCCC
Q 015613 351 RLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS 399 (403)
Q Consensus 351 ~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~~~~ 399 (403)
.++..++++|+++++||+++|+.|..++++|+++++++|++|++-++++
T Consensus 196 ~l~~~~~~~g~~~i~iN~~~t~~d~~~~~~i~~~~~~~l~~l~~~~~~~ 244 (244)
T PRK14138 196 ELPLITVRSGGKLVIVNLGETPLDDIATLKYNMDVVEFANRVMSEGGIS 244 (244)
T ss_pred HHHHHHHHcCCeEEEEcCCCCCCCcceeEEEeCCHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999987764
No 5
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=100.00 E-value=4.2e-60 Score=454.08 Aligned_cols=239 Identities=39% Similarity=0.669 Sum_probs=212.4
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCCccCCCCCcCCCCCcccCCCCC---cChHHHhhChhHHHHHHHHHHhhhhccccCCCC
Q 015613 112 INQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPN 188 (403)
Q Consensus 112 l~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~p---~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn 188 (403)
+++++++|.+|++|||+|||||||+|||||||+++|+|..+|.| ++.+.|.++|...|.|+.+... ....++||
T Consensus 2 ~~~~~~~l~~a~~ivvltGAGiSa~sGIpdFR~~~Gl~~~~~~p~~l~s~~~f~~~p~~~~~f~~~~~~---~~~~a~Pn 78 (250)
T COG0846 2 LEEVAQALKEAKRIVVLTGAGISAESGIPDFRSKDGLWSDKYDPEDLASPSGFRRDPELVWDFYSERLR---LLYLAQPN 78 (250)
T ss_pred HHHHHHHHHhcCcEEEEeCCccccccCCCcccCCCCCCCCCCCHHHHhCHHHHhhCHHHHHHHHHHHHH---hhhcCCCC
Confidence 57889999999999999999999999999999999999866776 4788899988877777654332 23358999
Q ss_pred HHHHHHHHHHHhCCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhcCC
Q 015613 189 PAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYG 267 (403)
Q Consensus 189 ~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~~g 267 (403)
.+|++|++|+++|++++||||||||||++||+++ +||||++...+|.+|+..++.+.....
T Consensus 79 ~~H~~la~le~~~~~~~iiTQNiD~Lhe~AGs~~Vi~lHGsl~~~~C~~C~~~~~~~~~~~~------------------ 140 (250)
T COG0846 79 KAHYALAELEDKGKLLRIITQNIDGLHERAGSKNVIELHGSLKRVRCSKCGNQYYDEDVIKF------------------ 140 (250)
T ss_pred HHHHHHHHHhhcCCceEEEecccchHHHHcCCCcEEEeccceeeeEeCCCcCccchhhhhhh------------------
Confidence 9999999999999999999999999999999999 999999999999999988764432100
Q ss_pred CCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCC-cccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcch
Q 015613 268 SPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNG-VLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMT 346 (403)
Q Consensus 268 ~p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg-~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V 346 (403)
.....+|+||+||+ .|||+||||||.+|.+.++.+.+.+++||++||+|||+.|
T Consensus 141 -------------------------~~~~~~p~C~~Cg~~~lrP~VV~fGE~lp~~~~~~~~~~~~~~d~liviGTSl~V 195 (250)
T COG0846 141 -------------------------IEDGLIPRCPKCGGPVLRPDVVWFGEPLPASFLDEALEALKEADLLIVIGTSLKV 195 (250)
T ss_pred -------------------------cccCCCCcCccCCCccccCCEEEeCCCCCHHHHHHHHHHhccCCEEEEECcceEE
Confidence 01125899999999 9999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhC
Q 015613 347 MSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 347 ~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~ 396 (403)
+|++.++..++++|+.+++||.++++++..+++.|.++++++++.|++.+
T Consensus 196 ~Paa~~p~~~~~~g~~~i~iN~~~~~~~~~~d~~i~~~a~~~~~~l~~~~ 245 (250)
T COG0846 196 YPAAGLPELAKRRGAKVIEINLEPTRLDPIADEVIRGDAGEVLPLLLEEL 245 (250)
T ss_pred cChhhhhHHHHhcCCEEEEECCCcccCcchhHHHHHhhHHHHHHHHHHHh
Confidence 99999888788999999999999999999999999999999999998754
No 6
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=100.00 E-value=2.2e-59 Score=455.47 Aligned_cols=237 Identities=27% Similarity=0.497 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCccCCCCCcCCC-CCcccCCCCC---cChHHHhhChhHHHHHHHHHHhhhhcccc
Q 015613 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMA 184 (403)
Q Consensus 109 ~~~l~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~-~Gly~~~~~p---~~~~~f~~~~~~~~~fw~~~~~~~~~~~~ 184 (403)
...+++++++|+++++|||+|||||||+||||||||+ +|+|.. +.| .+...|..+|...|.||.+.. ...+
T Consensus 15 ~~~l~~l~~~l~~s~~ivvlTGAGiSteSGIPdFR~~~~Glw~~-~~~~~~~t~~~f~~~p~~~~~~~~~~~----~~~~ 89 (271)
T PTZ00409 15 SITLEDLADMIRKCKYVVALTGSGTSAESNIPSFRGPSSSIWSK-YDPKIYGTIWGFWKYPEKIWEVIRDIS----SDYE 89 (271)
T ss_pred cccHHHHHHHHHhCCcEEEEECCeechhhCCCcccCCCCccccC-CCHHHhccHHHHHHChHHHHHHHHHhh----hccc
Confidence 3467889999999999999999999999999999998 699974 655 356678888887777764321 2347
Q ss_pred CCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhh
Q 015613 185 AQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIES 263 (403)
Q Consensus 185 a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~ 263 (403)
++||.+|++|++|++.|++.+||||||||||++||+++ +|+||++..++|.+|++.++.+.. +...++.
T Consensus 90 a~PN~~H~aLa~Le~~g~~~~vITQNIDgLh~rAGs~~V~ElHG~l~~~~C~~C~~~~~~~~~---~~~~~~~------- 159 (271)
T PTZ00409 90 IELNPGHVALSTLESLGYLKFVVTQNVDGLHEESGNTKVIPLHGSVFEARCCTCRKTIQLNKI---MLQKTSH------- 159 (271)
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEeccccchHhHcCCCcEEEeccCcCcceeCCCCCCcccCHH---HHhhhhh-------
Confidence 89999999999999999999999999999999999988 999999999999999987653321 1000000
Q ss_pred hcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccC
Q 015613 264 LDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSS 343 (403)
Q Consensus 264 l~~g~p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTS 343 (403)
. ....+|+|+ |||+|||+||||||.+|++.++++.+++++||++||||||
T Consensus 160 -----------------------~------~~~~~P~C~-Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTS 209 (271)
T PTZ00409 160 -----------------------F------MHQLPPECP-CGGIFKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTS 209 (271)
T ss_pred -----------------------h------ccCCCCCCC-CCCcccCcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCC
Confidence 0 011469999 9999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC-cccEEEECcHHHHHH
Q 015613 344 LMTMSAYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKISARLGEILP 390 (403)
Q Consensus 344 L~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~-~~~l~I~~~~~evL~ 390 (403)
|.|+|+++|+..++++|+++|+||+++|+.++ .++++|++++++++.
T Consensus 210 l~V~pa~~l~~~a~~~g~~vi~IN~~~t~~~~~~~d~~i~~~~~~~~~ 257 (271)
T PTZ00409 210 SSVSTATNLCYRAHRKKKKIVEVNISKTYITNRISDYHVRAKFSELAQ 257 (271)
T ss_pred CcccCHHHHHHHHHHcCCCEEEECCCCCCCCCccccEEEECcHHHHHH
Confidence 99999999999999999999999999999874 689999999999995
No 7
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.2e-58 Score=443.81 Aligned_cols=235 Identities=39% Similarity=0.701 Sum_probs=209.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCccCCCCCcCCCCCcccCCCCC---cChHHHhhChhHHHHHHHHHHhhhhccccCCC
Q 015613 111 DINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQP 187 (403)
Q Consensus 111 ~l~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~p---~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~P 187 (403)
++++++++|++|++|||+||||||++|||||||+.+|+|.. +.+ .+...|..+|..+|.||.+... .+.+++|
T Consensus 2 ~l~~l~~~i~~~~~ivi~tGAGiS~~sGip~FR~~~gl~~~-~~~~~~~~~~~~~~~p~~~w~f~~~~~~---~~~~~~P 77 (242)
T PRK00481 2 RIEELAEILDKAKRIVVLTGAGISAESGIPDFRSANGLWEE-HRPEDVASPEGFARDPELVWKFYNERRR---QLLDAKP 77 (242)
T ss_pred hHHHHHHHHHhCCCEEEEeCCccccccCCCCccCCCcCccC-CCHHHhccHHHHhhCHHHHHHHHHHHHH---HhccCCC
Confidence 57789999999999999999999999999999999999974 544 3567788888888888765432 2348999
Q ss_pred CHHHHHHHHHHHhCCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhcC
Q 015613 188 NPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDY 266 (403)
Q Consensus 188 n~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~~ 266 (403)
|++|++|++|+++|++++||||||||||++||.++ +|+||++..++|++|++.|+.+.+.
T Consensus 78 n~~H~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~------------------- 138 (242)
T PRK00481 78 NAAHRALAELEKLGKLVTVITQNIDGLHERAGSKNVIELHGSLLRARCTKCGQTYDLDEYL------------------- 138 (242)
T ss_pred CHHHHHHHHHHhcCCCeEEEEeccchhHHHcCCCceeeccCCcCceeeCCCCCCcChhhhc-------------------
Confidence 99999999999999999999999999999999888 9999999999999999887643210
Q ss_pred CCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcch
Q 015613 267 GSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMT 346 (403)
Q Consensus 267 g~p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V 346 (403)
...+|+||.|||+|||+||||||.+|++.++++.++++++|++||||||+.|
T Consensus 139 ----------------------------~~~~p~C~~Cgg~lrP~Vv~fge~~~~~~~~~a~~~~~~~dl~lviGTsl~V 190 (242)
T PRK00481 139 ----------------------------KPEPPRCPKCGGILRPDVVLFGEMLPELAIDEAYEALEEADLFIVIGTSLVV 190 (242)
T ss_pred ----------------------------cCCCCCCCCCCCccCCCeEECCCCCCHHHHHHHHHHHhcCCEEEEECCCceE
Confidence 0136889999999999999999999998899999999999999999999999
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhC
Q 015613 347 MSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 347 ~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~ 396 (403)
+|+.++++.++++|+++|+||++++..+..+++.|.++++++|++|++.+
T Consensus 191 ~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 191 YPAAGLPYEAREHGAKTVEINLEPTPLDSLFDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred cCHhHHHHHHHHCCCeEEEECCCCCCCCCccCEEEECCHHHHHHHHHHHh
Confidence 99999998888889999999999999999999999999999999998764
No 8
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=100.00 E-value=4.1e-58 Score=435.26 Aligned_cols=218 Identities=44% Similarity=0.768 Sum_probs=194.0
Q ss_pred HHcCCcEEEEeCCCCCccCCCCCcCCCCCcccCCCCC---cChHHHhhChhHHHHHHHHHHhhhhccccCCCCHHHHHHH
Q 015613 119 FDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALA 195 (403)
Q Consensus 119 l~~ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~p---~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn~~H~~La 195 (403)
|++|++|||+||||||++|||||||+++|+|.. +.+ .+...|..+|..+|+||.+.+.. ...++||++|++|+
T Consensus 1 l~~a~~ivv~tGAGiS~~sGIp~FR~~~glw~~-~~~~~~~~~~~f~~~p~~~w~~~~~~~~~---~~~a~Pn~~H~~La 76 (222)
T cd01413 1 LTKSRKTVVLTGAGISTESGIPDFRSPDGLWKK-YDPEEVASIDYFYRNPEEFWRFYKEIILG---LLEAQPNKAHYFLA 76 (222)
T ss_pred CCCCCeEEEEECchhhhhhCCCCccCcCCCcCC-CCHHHhccHHHHhHCHHHHHHHHHHHhcc---cCCCCCCHHHHHHH
Confidence 467999999999999999999999999999974 554 36677888999899998765432 34799999999999
Q ss_pred HHHHhCCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCC
Q 015613 196 SLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRS 274 (403)
Q Consensus 196 ~L~~~gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~~g~p~~~~~ 274 (403)
+|+++|++.+||||||||||++||.++ +|+||++..++|.+|++.|+.+.+. .+
T Consensus 77 ~L~~~~~~~~viTQNiDgLh~~AG~~~v~elHG~l~~~~C~~C~~~~~~~~~~-~~------------------------ 131 (222)
T cd01413 77 ELEKQGIIKAIITQNIDGLHQRAGSKNVIELHGTLQTAYCVNCGSKYDLEEVK-YA------------------------ 131 (222)
T ss_pred HHHhcCCCeEEEEeccchhhHHcCCCcEEEccCCcCcceECCCCCCcchhHHH-Hh------------------------
Confidence 999999999999999999999999887 9999999999999999988754320 00
Q ss_pred cCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHH
Q 015613 275 FGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVR 354 (403)
Q Consensus 275 ~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~ 354 (403)
....+|+||.|||+|||+||||||.+|++.++++.+++++||++|||||||+|+|+..|+.
T Consensus 132 -------------------~~~~~p~C~~Cgg~lrP~Vv~fgE~lp~~~~~~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~ 192 (222)
T cd01413 132 -------------------KKHEVPRCPKCGGIIRPDVVLFGEPLPQALLREAIEAAKEADLFIVLGSSLVVYPANLLPL 192 (222)
T ss_pred -------------------ccCCCCcCCCCCCccCCCEEECCCCCCHHHHHHHHHHHhcCCEEEEEccCCEeccHhHHHH
Confidence 0125799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeEEEEcCCCCCCCCcccEEEECc
Q 015613 355 AAHEAGSTIAIVNVGETRADDLTTLKISAR 384 (403)
Q Consensus 355 ~a~~~g~~liiIN~~~t~~d~~~~l~I~~~ 384 (403)
.++++|+++|+||+++++.+..+++.|+++
T Consensus 193 ~a~~~g~~~i~iN~~~~~~~~~~~~~i~~~ 222 (222)
T cd01413 193 IAKENGAKLVIVNADETPFDYIADLVIQDK 222 (222)
T ss_pred HHHHcCCeEEEEcCCCCCCCcceeEEEeCC
Confidence 999999999999999999999999999874
No 9
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=100.00 E-value=5.1e-58 Score=438.06 Aligned_cols=221 Identities=28% Similarity=0.470 Sum_probs=190.0
Q ss_pred CcEEEEeCCCCCccCCCCCcCCCC-CcccCC-----CCC---cChHHHhhChhHHHHHHHHHHhhhhccccCCCCHHHHH
Q 015613 123 AKLIVLTGAGISTECGIPDYRSPN-GAYSSG-----FKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFA 193 (403)
Q Consensus 123 k~IVVlTGAGIStsSGIPdFRs~~-Gly~~~-----~~p---~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn~~H~~ 193 (403)
|+|||+|||||||+||||||||++ |+|... ..+ .+.+.|.++|..+|.|+... . ..+++||.+|++
T Consensus 1 k~ivvlTGAGiS~~SGIPdfR~~~~G~w~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~-~----~~~a~Pn~~H~~ 75 (235)
T cd01408 1 KKIVVLVGAGISTSAGIPDFRSPGTGLYANLARYNLPYPEAMFDISYFRKNPRPFYALAKEL-Y----PGQFKPSVAHYF 75 (235)
T ss_pred CcEEEEeCCccccccCCCCcCCCCCCcchhhhhccCCCHHHhcCHHHHHHChHHHHHHHHHH-h----cCcCCCCHHHHH
Confidence 579999999999999999999999 999752 122 35667888887655444321 1 147999999999
Q ss_pred HHHHHHhCCCceEEeccccchHHHhCCC--c-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCC
Q 015613 194 LASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPG 270 (403)
Q Consensus 194 La~L~~~gkl~~ViTQNIDgLh~rAG~~--~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~~g~p~ 270 (403)
|++|+++|++.+||||||||||+|||++ + +|+||++..++|.+|++.|+.+.+...+
T Consensus 76 la~L~~~g~~~~viTQNiD~Lh~raG~~~~~V~elHG~l~~~~C~~C~~~~~~~~~~~~~-------------------- 135 (235)
T cd01408 76 IKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCIKCKHKYPGDWMREDI-------------------- 135 (235)
T ss_pred HHHHHhcCCceEEEEeccchHHHHcCCCccCEEEeCcCCCccccccCCCcCCHHHHHHHH--------------------
Confidence 9999999999999999999999999987 4 9999999999999999988765432111
Q ss_pred CCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcchhhHH
Q 015613 271 SDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAY 350 (403)
Q Consensus 271 ~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~ 350 (403)
....+|+||.|||.|||+||||||.+|++.++.+.+++++||++|||||||.|+|+.
T Consensus 136 -----------------------~~~~~p~C~~Cgg~lrP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~ 192 (235)
T cd01408 136 -----------------------FNQEVPKCPRCGGLVKPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFA 192 (235)
T ss_pred -----------------------hCCCCccCCCCCCCccCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHH
Confidence 011379999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEcCCCCCCC--CcccEEEECcHHHHHHHH
Q 015613 351 RLVRAAHEAGSTIAIVNVGETRAD--DLTTLKISARLGEILPRV 392 (403)
Q Consensus 351 ~lv~~a~~~g~~liiIN~~~t~~d--~~~~l~I~~~~~evL~~L 392 (403)
.|+..++ .|+++|+||++++..+ ..+++.|+++|+++|++|
T Consensus 193 ~l~~~~~-~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 193 SLPSRVP-SEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred HHHHHHh-CCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 9998876 6899999999999988 889999999999999875
No 10
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=4.5e-57 Score=428.99 Aligned_cols=219 Identities=32% Similarity=0.619 Sum_probs=194.5
Q ss_pred HHHHHHcCCcEEEEeCCCCCccCCCCCcCCCCCcccCC--CCC---cChHHHhhChhHHHHHHHHHHhhhhccccCCCCH
Q 015613 115 LYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSG--FKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNP 189 (403)
Q Consensus 115 l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~--~~p---~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn~ 189 (403)
|+++|++|++|||+||||||++|||||||+++|+|... +.| .+...|..+|..+|.||.+.+ .+.+++||.
T Consensus 1 ~~~~i~~a~~ivv~tGAGiS~~sGIpdfR~~~G~w~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~Pn~ 76 (225)
T cd01411 1 LQHILKNAKRIVFFTGAGVSTASGIPDYRSKNGLYNEIYKYSPEYLLSHDFLEREPEKFYQFVKENL----YFPDAKPNI 76 (225)
T ss_pred ChHHHhhCCCEEEEECCccccccCCCCccCCCcCccCcCCCChHHeecHHHHHHCHHHHHHHHHHHh----hCCCCCCCH
Confidence 46789999999999999999999999999999999863 454 366778888988888887542 234789999
Q ss_pred HHHHHHHHHHhCCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCC
Q 015613 190 AHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 268 (403)
Q Consensus 190 ~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~~g~ 268 (403)
+|++|++|++.| +.+||||||||||++||.++ +|+||++..++|.+|+..++.+.+
T Consensus 77 ~H~~La~L~~~~-~~~viTQNvD~Lh~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~---------------------- 133 (225)
T cd01411 77 IHQKMAELEKMG-LKAVITQNIDGLHQKAGSKNVVEFHGSLYRIYCTVCGKTVDWEEY---------------------- 133 (225)
T ss_pred HHHHHHHHHHcC-CcEEEEeccchhhhhcCCCcEEEeCCCcCeeEeCCCCCccchhhc----------------------
Confidence 999999999887 88999999999999999887 999999999999999877653210
Q ss_pred CCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcchhh
Q 015613 269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMS 348 (403)
Q Consensus 269 p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p 348 (403)
..+|+||.|||+|||+||||||.+|++.++.+.++++++|++||||||+.|+|
T Consensus 134 ---------------------------~~~p~C~~Cgg~lrP~vv~fge~~~~~~~~~~~~~~~~~DlllviGTSl~v~p 186 (225)
T cd01411 134 ---------------------------LKSPYHAKCGGVIRPDIVLYEEMLNESVIEEAIQAIEKADLLVIVGTSFVVYP 186 (225)
T ss_pred ---------------------------CCCCCCCCCCCEeCCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCeehh
Confidence 13699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHH
Q 015613 349 AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 389 (403)
Q Consensus 349 ~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL 389 (403)
+++++..++ +|+++|+||+++++.+..+++.|.+ +++++
T Consensus 187 ~~~l~~~~~-~~~~~i~iN~~~~~~~~~~~~~~~~-~~~~~ 225 (225)
T cd01411 187 FAGLIDYRQ-AGANLIAINKEPTQLDSPATLVIKD-AVKVF 225 (225)
T ss_pred HHHHHHHHh-CCCeEEEECCCCCCCCcchhehhcc-hhhhC
Confidence 999998764 7999999999999999999999999 98763
No 11
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=2.3e-56 Score=428.12 Aligned_cols=224 Identities=31% Similarity=0.483 Sum_probs=192.3
Q ss_pred HcCCcEEEEeCCCCCccCCCCCcCCCCCcccCCCCC---cChHHHhhChhHHHHHHHHHHhhhhccccCCCCHHHHHHHH
Q 015613 120 DNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALAS 196 (403)
Q Consensus 120 ~~ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~p---~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn~~H~~La~ 196 (403)
++|++|||+||||||++||||||||++|+|.. +.+ .++..|..+|..+|+||..... .....+++||.+|++|++
T Consensus 2 ~~~~~ivvlTGAGiS~~SGIPdFR~~~Glw~~-~~~~~~~~~~~f~~~p~~~~~f~~~~~~-~~~~~~~~Pn~~H~~L~~ 79 (242)
T PTZ00408 2 KACRCITILTGAGISAESGISTFRDGNGLWEN-HRVEDVATPDAFLRNPALVQRFYNERRR-ALLSSSVKPNKAHFALAK 79 (242)
T ss_pred CCCCeEEEEeCcchhhhhCCCcccCCCCCCCC-CChhhcCCHHHHHhCHHHHHHHHHHHHH-HhccCCCCCCHHHHHHHH
Confidence 46899999999999999999999999999974 443 4778899999988888853211 111357899999999999
Q ss_pred HHHh--CCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCC
Q 015613 197 LEKA--GRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDR 273 (403)
Q Consensus 197 L~~~--gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~~g~p~~~~ 273 (403)
|++. |++++||||||||||++||.++ +|+||+++.++|.+|++.|+.+..
T Consensus 80 Le~~~~~~~~~iiTQNiDgLh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~--------------------------- 132 (242)
T PTZ00408 80 LEREYRGGKVVVVTQNVDNLHERAGSTHVLHMHGELLKVRCTATGHVFDWTED--------------------------- 132 (242)
T ss_pred HHHhhcCCcEEEEeecccchhhHcCCCcEEEecCccceEEECCCCcccCchhh---------------------------
Confidence 9986 8889999999999999999988 999999999999999987653210
Q ss_pred CcCcccCCCCCcccccccccccCCCCCCCCCC--CcccCcEEecCC-CCcHHHHHHHHHHHhhCCeEEEEccCcchhhHH
Q 015613 274 SFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCN--GVLKPDVVFFGD-NVPKDRADKAMEAAKECDAFLVLGSSLMTMSAY 350 (403)
Q Consensus 274 ~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cg--g~lrP~Vv~FgE-~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~ 350 (403)
. ...+|.||.|| |.+||+|||||| .++.+.++ +++++||++|||||||.|+|++
T Consensus 133 -----------~---------~~~~p~C~~Cg~~g~lrP~vV~FGE~~~~~~~~~---~~~~~~DlllviGTSl~V~pa~ 189 (242)
T PTZ00408 133 -----------V---------VHGSSRCKCCGCVGTLRPHIVWFGEMPLYMDEIE---SVMSKTDLFVAVGTSGNVYPAA 189 (242)
T ss_pred -----------h---------hcCCCccccCCCCCCCCCCEEEcCCCCCcHHHHH---HHHHhCCEEEEEccCCccccHH
Confidence 0 01369999998 999999999999 78866555 4478999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHh
Q 015613 351 RLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDV 395 (403)
Q Consensus 351 ~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~ 395 (403)
+++..++++|+++++||++++..++.+++.|.++++++|++|++.
T Consensus 190 ~l~~~a~~~g~~vi~IN~~~~~~~~~~~~~i~g~~~~~l~~l~~~ 234 (242)
T PTZ00408 190 GFVGRAQFYGATTLELNLEEGTNYSQFDESIYGKASVIVPAWVDR 234 (242)
T ss_pred HHHHHHHHcCCeEEEECCCCCCCCccCCEEEECCHHHHHHHHHHH
Confidence 999999999999999999999988888999999999999999773
No 12
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=1.8e-56 Score=419.58 Aligned_cols=203 Identities=39% Similarity=0.626 Sum_probs=176.1
Q ss_pred CcEEEEeCCCCCccCCCCCcCCCCCcccCCCCCcChHHHhhChhHHHHHHHHHHhhhhccccCCCCHHHHHHHHHHHhCC
Q 015613 123 AKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGR 202 (403)
Q Consensus 123 k~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~p~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn~~H~~La~L~~~gk 202 (403)
|+|||+||||||++||||||||++|+|.. +.+ |..++. .+|. | ..++||.+|++|++|+++|+
T Consensus 1 k~ivvltGAGiS~~SGIP~fR~~~Glw~~-~~~-----~~~~~~---~~~~--~------~~~~Pn~~H~~La~l~~~g~ 63 (206)
T cd01410 1 KHLVVFTGAGISTSAGIPDFRGPNGVWTL-LPE-----DKGRRR---FSWR--F------RRAEPTLTHMALVELERAGL 63 (206)
T ss_pred CcEEEEeCCcccHhhCCCcccCcCCCccc-CCc-----cccChH---HHhh--h------hcCCCCHHHHHHHHHHHCCC
Confidence 57999999999999999999999999975 333 233332 4443 1 14899999999999999999
Q ss_pred CceEEeccccchHHHhCCCc---eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCcCccc
Q 015613 203 IDCMITQNVDRLHHRAGSNP---LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQ 279 (403)
Q Consensus 203 l~~ViTQNIDgLh~rAG~~~---ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~~g~p~~~~~~~~~~ 279 (403)
+.+||||||||||++||++. +|+||++..++|.+|+..++.+.+.+.+
T Consensus 64 ~~~viTQNID~Lh~~AG~~~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~----------------------------- 114 (206)
T cd01410 64 LKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCGPEYVRDDVVETR----------------------------- 114 (206)
T ss_pred CceEEecCccchHhHcCcCcccEEEecCCcCcccCCCCCCccchHHHHHHh-----------------------------
Confidence 99999999999999999853 9999999999999999887765433211
Q ss_pred CCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhC
Q 015613 280 RPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEA 359 (403)
Q Consensus 280 ~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~ 359 (403)
.....+|+|+.|||.|||+||||||.+|...++++.+++++||++|||||||.|+|++.|+..++++
T Consensus 115 -------------~~~~~~p~C~~Cgg~lrP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~ 181 (206)
T cd01410 115 -------------GDKETGRRCHACGGILKDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARA 181 (206)
T ss_pred -------------hcCCCCCcCCCCcCccCCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhc
Confidence 0012479999999999999999999999998999999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCCCCCcccEEEECc
Q 015613 360 GSTIAIVNVGETRADDLTTLKISAR 384 (403)
Q Consensus 360 g~~liiIN~~~t~~d~~~~l~I~~~ 384 (403)
|+++|+||+++++.+..+++.|+++
T Consensus 182 g~~vi~iN~~~~~~d~~~d~~~~~~ 206 (206)
T cd01410 182 GGRLVIVNLQPTPKDKLADLVIHGD 206 (206)
T ss_pred CCeEEEECCCCCCCCccccEEEeCC
Confidence 9999999999999999999999875
No 13
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=100.00 E-value=4.3e-56 Score=421.33 Aligned_cols=220 Identities=38% Similarity=0.667 Sum_probs=194.8
Q ss_pred CcEEEEeCCCCCccCCCCCcCCCCCcccCCCCC---cChHHHhhChhHHHHHHHHHHhhhhccccCCCCHHHHHHHHHHH
Q 015613 123 AKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEK 199 (403)
Q Consensus 123 k~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~p---~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn~~H~~La~L~~ 199 (403)
++|||+||||||++|||||||+++|+|.. +.+ .+...|..+|..+|.||.+... .+..++||.+|++|++|++
T Consensus 1 ~~ivi~tGAGiS~~sGIp~fR~~~g~~~~-~~~~~~~~~~~f~~~p~~~w~f~~~~~~---~~~~~~Pn~~H~~L~~L~~ 76 (224)
T cd01412 1 RRVVVLTGAGISAESGIPTFRDADGLWAR-FDPEELATPEAFARDPELVWEFYNWRRR---KALRAQPNPAHLALAELER 76 (224)
T ss_pred CcEEEEeCCccchhhCCCCccCcCCCcCC-CChhhcCCHHHHHHCHHHHHHHHHHHHH---HccccCCCHHHHHHHHHHh
Confidence 57999999999999999999999999974 544 3677888888888888764332 2357899999999999999
Q ss_pred hCCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCcCcc
Q 015613 200 AGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMK 278 (403)
Q Consensus 200 ~gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~~g~p~~~~~~~~~ 278 (403)
++++++||||||||||++||+++ +|+||++..++|..|++.+..+..
T Consensus 77 ~~~~~~viTqNiDgL~~~aG~~~v~e~HG~~~~~~C~~C~~~~~~~~~-------------------------------- 124 (224)
T cd01412 77 RLPNVLLITQNVDGLHERAGSRNVIELHGSLFRVRCSSCGYVGENNEE-------------------------------- 124 (224)
T ss_pred cCCCeEEEEccchHhhHHhCCCceEeeCCCcCccccCCCCCCCCcchh--------------------------------
Confidence 99899999999999999999977 999999999999999987653210
Q ss_pred cCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHh
Q 015613 279 QRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHE 358 (403)
Q Consensus 279 ~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~ 358 (403)
.....+|+||.|||.|||+|+||||.+|+ .++.+.++++++|++||||||+.|.|+.+++..+++
T Consensus 125 --------------~~~~~~p~C~~Cgg~lrp~Vv~fge~~p~-~~~~~~~~~~~~dl~lvlGTsl~v~p~~~l~~~~~~ 189 (224)
T cd01412 125 --------------IPEEELPRCPKCGGLLRPGVVWFGESLPL-ALLEAVEALAKADLFLVIGTSGVVYPAAGLPEEAKE 189 (224)
T ss_pred --------------hhccCCCCCCCCCCccCCceEECCCCCHH-HHHHHHHHHHcCCEEEEECcCccchhHHHHHHHHHH
Confidence 01125799999999999999999999999 788999999999999999999999999999998888
Q ss_pred CCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHH
Q 015613 359 AGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 393 (403)
Q Consensus 359 ~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~ 393 (403)
+|+++|+||++++..+..+++.|+++++++|++|+
T Consensus 190 ~~~~~i~iN~~~~~~~~~~~~~i~g~~~~~l~~l~ 224 (224)
T cd01412 190 RGARVIEINPEPTPLSPIADFAFRGKAGEVLPALL 224 (224)
T ss_pred CCCeEEEECCCCCCCCCcCCEEEECCHHHHHHHhC
Confidence 89999999999999999999999999999999874
No 14
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=100.00 E-value=1.4e-55 Score=416.41 Aligned_cols=213 Identities=44% Similarity=0.759 Sum_probs=188.6
Q ss_pred CcEEEEeCCCCCccCCCCCcCCCCCcccCCCCC----cChHHHhhChhHHHHHHHHHHhhhhccccCCCCHHHHHHHHHH
Q 015613 123 AKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP----ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLE 198 (403)
Q Consensus 123 k~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~p----~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn~~H~~La~L~ 198 (403)
|+|||+||||||++|||||||+++|+|.. +.+ .+...|..+|..+|.||.+.+. ...++||++|++|++|+
T Consensus 1 k~ivv~tGAGiS~~sGIpdfR~~~G~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----~~~~~Pn~~H~~L~~L~ 75 (218)
T cd01407 1 KRIVVLTGAGISTESGIPDFRSPGGLWAR-LDPEELAFSPEAFRRDPELFWGFYRERRY----PLNAQPNPAHRALAELE 75 (218)
T ss_pred CcEEEEeCCccccccCCCcccCCCCcccc-CChhhccCCHHHHHHCHHHHHHHHHHhhh----hccCCCCHHHHHHHHHH
Confidence 57999999999999999999999999975 333 2667788889888888865433 45899999999999999
Q ss_pred HhCCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCcCc
Q 015613 199 KAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGM 277 (403)
Q Consensus 199 ~~gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~~g~p~~~~~~~~ 277 (403)
++|++.+||||||||||++||+++ +|+||++..++|..|++.++.+.+...+
T Consensus 76 ~~~~~~~viTQNiDgL~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~--------------------------- 128 (218)
T cd01407 76 RKGKLKRVITQNVDGLHQRAGSPKVIELHGSLFRVRCTKCGKEYPRDELQADI--------------------------- 128 (218)
T ss_pred hcCCCeeEEEeccchhHHHcCCCCEEECcCCcCcceeCCCcCCCcHHHHhHhh---------------------------
Confidence 999999999999999999999998 9999999999999999887654321000
Q ss_pred ccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHH
Q 015613 278 KQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAH 357 (403)
Q Consensus 278 ~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~ 357 (403)
....+|+||.|||.|||+||||||.+|+. ++++.++++++|++||||||+.|+|+++++..++
T Consensus 129 ----------------~~~~~p~C~~Cg~~lrP~Vv~fgE~~p~~-~~~a~~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~ 191 (218)
T cd01407 129 ----------------DREEVPRCPKCGGLLRPDVVFFGESLPEE-LDEAAEALAKADLLLVIGTSLQVYPAAGLPLYAP 191 (218)
T ss_pred ----------------ccCCCCcCCCCCCccCCCeEECCCCCcHH-HHHHHHHHhcCCEEEEeCCCcccccHHHHHHHHH
Confidence 11258999999999999999999999998 9999999999999999999999999999999998
Q ss_pred hCCCeEEEEcCCCCCCCCcccEEEECc
Q 015613 358 EAGSTIAIVNVGETRADDLTTLKISAR 384 (403)
Q Consensus 358 ~~g~~liiIN~~~t~~d~~~~l~I~~~ 384 (403)
++|+++|+||++++..+..+++.|+++
T Consensus 192 ~~~~~~i~iN~~~~~~~~~~d~~~~~~ 218 (218)
T cd01407 192 ERGAPVVIINLEPTPADRKADLVILGD 218 (218)
T ss_pred HCCCeEEEECCCCCCCCccceEEEeCC
Confidence 899999999999999999999999875
No 15
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=100.00 E-value=2e-53 Score=423.79 Aligned_cols=214 Identities=28% Similarity=0.512 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHc--CCcEEEEeCCCCCccCCCCCcCCC-CCcccCC--C---CC---cChHHHhhChhHHHHHHHHHHhh
Q 015613 110 EDINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSP-NGAYSSG--F---KP---ITHQQFVRSSRARRRYWARSYAG 178 (403)
Q Consensus 110 ~~l~~l~~~l~~--ak~IVVlTGAGIStsSGIPdFRs~-~Gly~~~--~---~p---~~~~~f~~~~~~~~~fw~~~~~~ 178 (403)
..++.++++|++ +++|||+|||||||+|||||||++ +|+|... + .| ++...|.++|..+|.||.+ +..
T Consensus 15 ~~l~~la~~I~~~~ak~IVvlTGAGISteSGIPdFRs~~~Glw~~~~~~~~~~pe~~fs~~~f~~~P~~f~~~~r~-~~~ 93 (349)
T PTZ00410 15 PTFEGLARYIERNNVTKILVMVGAGISVAAGIPDFRSPHTGIYAKLGKYNLNSPTDAFSLTLLREKPEVFYSIARE-MDL 93 (349)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECcccccccCCCcccCcCCCcCccccccCCCCHHHHcCHHHHHHCHHHHHHHHHH-hhc
Confidence 458899999998 679999999999999999999999 4999752 2 23 3556677888876666533 222
Q ss_pred hhccccCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCCc---eeeccceeeEEcCCCCcccchhhHHHHHHhhCh
Q 015613 179 WRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNP 255 (403)
Q Consensus 179 ~~~~~~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~---ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p 255 (403)
|. ..++||.+|++|+.|+++|++.+||||||||||++||++. +|+||++++++|..|++.|+.+.....+
T Consensus 94 ~~--~~a~Pn~aH~aLa~Le~~G~l~~vITQNIDgLh~rAG~~~~~ViElHGsl~~~~C~~C~~~~~~~~~~~~~----- 166 (349)
T PTZ00410 94 WP--GHFQPTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTPYDIEQAYLEA----- 166 (349)
T ss_pred cc--CcCCCCHHHHHHHHHHhcCCcceEEecchhhhHhhcCCCcccEEEeccCCCeeEeCCCCCCcchhHHHHHh-----
Confidence 22 2589999999999999999999999999999999999863 9999999999999999887654321100
Q ss_pred hHHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCC
Q 015613 256 KWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECD 335 (403)
Q Consensus 256 ~~~~~~~~l~~g~p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aD 335 (403)
....+|+|+.|||+|||+||||||.+|+..++ +.+++++||
T Consensus 167 --------------------------------------~~~~vP~C~~CgG~lRPdVVlFGE~lp~~~~~-a~~~~~~aD 207 (349)
T PTZ00410 167 --------------------------------------RSGKVPHCSTCGGIVKPDVVFFGENLPDAFFN-VHHDIPEAE 207 (349)
T ss_pred --------------------------------------hcCCCCCCCCCCCccCCcEEecCCcCCHHHHH-HHHHHHhCC
Confidence 01247999999999999999999999998777 889999999
Q ss_pred eEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCC
Q 015613 336 AFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET 371 (403)
Q Consensus 336 llLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t 371 (403)
++|||||||+|+|++.++..+. .++++|+||++++
T Consensus 208 llLVIGTSL~V~Paa~l~~~a~-~~~pvviIN~e~~ 242 (349)
T PTZ00410 208 LLLIIGTSLQVHPFALLACVVP-KDVPRVLFNLERV 242 (349)
T ss_pred EEEEECcCCcccCHHHHHHHHh-cCCCEEEECcccc
Confidence 9999999999999999998876 6899999998853
No 16
>KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.7e-50 Score=399.84 Aligned_cols=311 Identities=23% Similarity=0.392 Sum_probs=226.4
Q ss_pred eeecccCcHHHHhhhhccccceecCCchheeeeeeeeecCCCCCCCCCCcCCC---CchhcccCCCCCCCCCCCHHHHHH
Q 015613 38 KSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHEDKAPA---SPKVLRDKKAVPDADPPSIEDINQ 114 (403)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~l~~ 114 (403)
+.|+..++..+|+...+.+.+..-....--++... ..+|.. .....+-..+ -..+++. ......++..+++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~s-~~~~~~~~~~~~l~~~l~~~--~~~r~~~~~~~t~~~ 80 (412)
T KOG2684|consen 5 VSDWSHASTSDSKLRVNQREFPCGLQSRHILKELV-PLIPPS-REYSQEVNLLKDLQSTLLSE--CLKRARLSNFNTLAD 80 (412)
T ss_pred hhhhhcccccchHHHHhhcccccCcchHHHHHhcC-cccCCc-hhhchhhcccccHHHHHhhh--hhhhccCCccccHHH
Confidence 45666788889998777776664333322222222 111111 1111111110 1111111 111122344679999
Q ss_pred HHHHHHcCCcEEEEeCCCCCccCCCCCcCCCCCcccCCCCC--cChHH------HhhChhHHHHHHHHHHhhhhccccCC
Q 015613 115 LYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP--ITHQQ------FVRSSRARRRYWARSYAGWRRFMAAQ 186 (403)
Q Consensus 115 l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~p--~~~~~------f~~~~~~~~~fw~~~~~~~~~~~~a~ 186 (403)
+..+|++||+|||+||||||+++|||||||.+|+|+....+ -++++ |..++..+++|-...| -....
T Consensus 81 ~~~~l~kaKrIvVlTGAGVSvs~GIPDFRSs~G~ys~l~~~~l~sp~~mFd~~~fr~d~~~F~~~a~~l~-----~~~~~ 155 (412)
T KOG2684|consen 81 FVKLLKKAKRIVVLTGAGVSVSAGIPDFRSSEGIYSKLKAPDLPSPQAMFDISYFRDDPSIFYRFARELK-----PPSNN 155 (412)
T ss_pred HHHHHHhcCeEEEEeCCceeeecCCCCccccccHHHHhhcccCCCHHHhccchhhhcccHHHHHHHHHhc-----CCccC
Confidence 99999999999999999999999999999999999863222 23333 4444432322222221 23566
Q ss_pred CCHHHHHHHHHHHhCCCceEEeccccchHHHhCCCc---eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhh
Q 015613 187 PNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIES 263 (403)
Q Consensus 187 Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~---ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~ 263 (403)
|++.|.+|+.|+++||+.++||||||+||++||... +|||||+.++.|.+|++.++.+.+...+
T Consensus 156 ps~~H~Fi~~L~~~gkLlR~YTQNID~LE~~aGl~~~~lVq~HGSf~t~sCt~C~~k~~~~~~~~~~------------- 222 (412)
T KOG2684|consen 156 PSAFHEFIKLLEKKGKLLRNYTQNIDGLERKAGLSTNKLVQCHGSFKTASCTKCGYKKPFEELREDI------------- 222 (412)
T ss_pred CchHHHHHHHHHhcCceeEEeecccchhhhccCCCcCceEEeccccceeeecccccccChHHHHHHH-------------
Confidence 999999999999999999999999999999999976 9999999999999999998876543222
Q ss_pred hcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCC------------------cccCcEEecCCCCcHHHHH
Q 015613 264 LDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNG------------------VLKPDVVFFGDNVPKDRAD 325 (403)
Q Consensus 264 l~~g~p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg------------------~lrP~Vv~FgE~~p~~~~~ 325 (403)
..+.+|.||.|.+ +|||+||||||.+|+.++.
T Consensus 223 ------------------------------~~~~vp~CP~C~~~~~~r~~~g~r~~~~~vgvlrP~IvffgE~lP~~~~~ 272 (412)
T KOG2684|consen 223 ------------------------------RNQEVPVCPDCEGKNEKRRGAGKRCESEGVGVLRPDIVFFGENLPDSFHI 272 (412)
T ss_pred ------------------------------hcCcCccCcccccccccccCccccccccCccccccceEEecCCCChHHHh
Confidence 1236788999965 9999999999999999888
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhCCCCCCC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPA 402 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~~~~~~~ 402 (403)
........+||+|||||||+|+|+++++.... +..+.|.||.++-+ ...+++.+.++|+++...+...++...|.
T Consensus 273 ~~~~d~d~~DllIviGTSLKV~pV~~iv~~~~-~~vpqIliNr~~v~-h~efd~~ll~~CD~v~~~l~~~~g~~~~~ 347 (412)
T KOG2684|consen 273 GVGADLDECDLLIVIGTSLKVRPVAEIVKSFP-AKVPQILINRDPVP-HAEFDVELLGDCDDVIRLLCQKCGWLKPL 347 (412)
T ss_pred hhhccccccceEEEeCCccccccHHHHHhhhc-ccCcEEEecCcccc-ccccChhhccchHHHHHHHHhhccccchH
Confidence 87777788899999999999999999998875 45699999998443 34567888899999999999988877763
No 17
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=100.00 E-value=2.2e-48 Score=366.41 Aligned_cols=213 Identities=42% Similarity=0.665 Sum_probs=184.2
Q ss_pred CcEEEEeCCCCCccCCCCCcCCCC-CcccCCCC-C--cChHHHhhChhHHHHHHHHHHhhhhccccCCCCHHHHHHHHHH
Q 015613 123 AKLIVLTGAGISTECGIPDYRSPN-GAYSSGFK-P--ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLE 198 (403)
Q Consensus 123 k~IVVlTGAGIStsSGIPdFRs~~-Gly~~~~~-p--~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn~~H~~La~L~ 198 (403)
++|||+||||||++|||||||+.+ |+|..... . .+...|..++...|.||.+.+. ....++||.+|++|++|+
T Consensus 1 k~iv~~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~P~~~H~~l~~l~ 77 (222)
T cd00296 1 KRVVVFTGAGISTESGIPDFRGLGTGLWTRLDPEELAFSPEAFRRDPELFWLFYKERRY---TPLDAKPNPAHRALAELE 77 (222)
T ss_pred CCEEEEeCCccccccCCCCccccccchhhcCCcccccCCHHHHHHCHHHHHHHHHHHHh---hhCcCCCCHHHHHHHHHH
Confidence 579999999999999999999999 99985221 1 2567788888877777754432 245799999999999999
Q ss_pred HhCCCceEEeccccchHHHhCCC--c-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCc
Q 015613 199 KAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSF 275 (403)
Q Consensus 199 ~~gkl~~ViTQNIDgLh~rAG~~--~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~~g~p~~~~~~ 275 (403)
++|++.+|||||||+||++||++ . +|+||++...+|..|++.++.+.+..
T Consensus 78 ~~~~~~~iiTqNiD~L~~~ag~~~~~v~~lHG~~~~~~C~~C~~~~~~~~~~~--------------------------- 130 (222)
T cd00296 78 RKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYPRDEVLE--------------------------- 130 (222)
T ss_pred HcCCCceEEecChHHHHHHhCCCcCcEEEecCCCCccEECCCCCCcchhhhhh---------------------------
Confidence 99999999999999999999998 4 99999999999999998776433210
Q ss_pred CcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHH
Q 015613 276 GMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRA 355 (403)
Q Consensus 276 ~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~ 355 (403)
...+|+||.|||+|||+|++|||.+|+..+.++.+++.++|++|+|||||.|+|+.+++..
T Consensus 131 -------------------~~~~p~C~~C~~~l~p~v~~fge~~~~~~~~~~~~~~~~~d~llviGtSl~v~~~~~l~~~ 191 (222)
T cd00296 131 -------------------REKPPRCPKCGGLLRPDVVDFGEALPKEWFDRALEALLEADLVLVIGTSLTVYPAARLLLR 191 (222)
T ss_pred -------------------ccCCCCCCCCCCcccCceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHH
Confidence 0257999999999999999999999998888899999999999999999999999999999
Q ss_pred HHhCCCeEEEEcCCCCCCC--CcccEEEECc
Q 015613 356 AHEAGSTIAIVNVGETRAD--DLTTLKISAR 384 (403)
Q Consensus 356 a~~~g~~liiIN~~~t~~d--~~~~l~I~~~ 384 (403)
+.++|+++++||++++..+ ..+++.+.++
T Consensus 192 ~~~~~~~~~~in~~~~~~~~~~~~~~~~~~~ 222 (222)
T cd00296 192 APERGAPVVIINREPTPADALKKADLVILGD 222 (222)
T ss_pred HHHCCCcEEEECCCCCCCCCCCcceEEEeCC
Confidence 9888999999999999998 7788877763
No 18
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=100.00 E-value=4.1e-48 Score=354.54 Aligned_cols=173 Identities=42% Similarity=0.778 Sum_probs=132.7
Q ss_pred CCCCCccCCCCCcCC-CCCcccCCCCC---cChHHHhhChhHHHHHHHHHHhhhhccccCCCCHHHHHHHHHHHhCCCce
Q 015613 130 GAGISTECGIPDYRS-PNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDC 205 (403)
Q Consensus 130 GAGIStsSGIPdFRs-~~Gly~~~~~p---~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn~~H~~La~L~~~gkl~~ 205 (403)
|||||++|||||||| ++|+|.. +.+ .+.+.|..++...|..|.+.+..+. ...++||.+|++|++|+++|++.+
T Consensus 1 GAGiS~~SGIpdfR~~~~Glw~~-~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~-~~~a~Pn~~H~~La~L~~~g~~~~ 78 (178)
T PF02146_consen 1 GAGISTASGIPDFRSDPDGLWTK-YKPEELATPEAFFSDPEFVWEKFYRFRRKVI-SKDAEPNPGHRALAELEKKGKLKR 78 (178)
T ss_dssp -GGGGGGGT--SSSSTTSCHHHH-CHHHHHSSHHHHHHHHHHHHHHHHHHHHHHC-TCTS---HHHHHHHHHHHTTSEEE
T ss_pred CCccchhhCCCccccCCCCccee-eeccccccccccccccchhhhHHHHHhhhhc-cccCCCChhHHHHHHHHHhhhhcc
Confidence 899999999999999 8999985 322 3556677777666662322222211 128999999999999999999999
Q ss_pred EEeccccchHHHhCCCc-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCcCcccCCCCC
Q 015613 206 MITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGD 284 (403)
Q Consensus 206 ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~~g~p~~~~~~~~~~~pd~d 284 (403)
||||||||||++||+++ +|+||+++.++|.+|++.++.+.+.+.+.
T Consensus 79 viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~--------------------------------- 125 (178)
T PF02146_consen 79 VITQNIDGLHQKAGSPKVIELHGSLFRLRCSKCGKEYDREDIVDSID--------------------------------- 125 (178)
T ss_dssp EEES-SSSHHHHTTESCEEETTEEEEEEEETTTSBEEEGHHHHHHHH---------------------------------
T ss_pred ceecccchhhhcccchhhHHHHhhhceeeecCCCccccchhhccccc---------------------------------
Confidence 99999999999999999 99999999999999999988765543221
Q ss_pred cccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcchhh
Q 015613 285 IEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMS 348 (403)
Q Consensus 285 ~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p 348 (403)
....|+||.||+.|||+||||||.+| +.+..+.+++++|||+|||||||+|+|
T Consensus 126 ----------~~~~~~C~~C~~~lrp~vv~fgE~~~-~~~~~~~~~~~~~Dl~lviGTSl~V~P 178 (178)
T PF02146_consen 126 ----------EEEPPRCPKCGGLLRPDVVLFGESLP-EEIEEAIEDAEEADLLLVIGTSLQVYP 178 (178)
T ss_dssp ----------TTSSCBCTTTSCBEEEEE--BTSB-S-HHHHHHHHHHHH-SEEEEESS-STSTT
T ss_pred ----------ccccccccccCccCCCCeeecCCCCH-HHHHHHHHHHHcCCEEEEEccCcEEEC
Confidence 12468999999999999999999999 778889999999999999999999998
No 19
>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.3e-46 Score=350.66 Aligned_cols=239 Identities=25% Similarity=0.448 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHc--CCcEEEEeCCCCCccCCCCCcCCCC-CcccCC--CC---C---cChHHHhhChhHHHHHHHHHHhh
Q 015613 110 EDINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSPN-GAYSSG--FK---P---ITHQQFVRSSRARRRYWARSYAG 178 (403)
Q Consensus 110 ~~l~~l~~~l~~--ak~IVVlTGAGIStsSGIPdFRs~~-Gly~~~--~~---p---~~~~~f~~~~~~~~~fw~~~~~~ 178 (403)
-++++++.+++. .++++|+.||||||++|||||||++ |+|++. |+ | +....|..+|..++..-...|.+
T Consensus 22 l~lekvA~~mks~~~~rVi~mVGAGISTsaGIPDFRSP~tGlY~NLqr~~LPYpEAiFel~yF~~nP~PF~tLAkELyPg 101 (314)
T KOG2682|consen 22 LTLEKVARLMKSERCRRVIVMVGAGISTSAGIPDFRSPGTGLYDNLQRYHLPYPEAIFELSYFKKNPEPFFTLAKELYPG 101 (314)
T ss_pred hhHHHHHHHHhhCCcceEEEEecCccccccCCCCCCCCCchhhhhHHHhcCCChhhhhccHHhhcCCchHHHHHHHhCCC
Confidence 358889999874 5789999999999999999999997 999862 32 2 45677888888654443334443
Q ss_pred hhccccCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCCc---eeeccceeeEEcC-CCCcccchhhHHHHHHhhC
Q 015613 179 WRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVCL-DCGFSFCRDLFQDQVKALN 254 (403)
Q Consensus 179 ~~~~~~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~---ielHGs~~~~~C~-~C~~~~~~~~~~~~l~~~~ 254 (403)
+.+||.+||+|+.|.++|.+.++||||||+|++.||.+. +|.||++++.+|. .|++.|+.+.+...+
T Consensus 102 -----nfkPt~~HYflrLl~DK~lL~r~YTQNIDtLER~aGv~d~~lvEAHGtFa~s~Ci~~C~~~yp~e~~ka~i---- 172 (314)
T KOG2682|consen 102 -----NFKPTITHYFLRLLHDKGLLLRCYTQNIDTLERIAGVPDEDLVEAHGTFATSHCISSCRHEYPLEWMKAKI---- 172 (314)
T ss_pred -----CcCchhHHHHHHHHccccHHHHHHhccchHHHHhcCCCHHHHHHhccceeeeeehhhhcCcCCHHHHHHHH----
Confidence 789999999999999999999999999999999999987 9999999999999 599999866543222
Q ss_pred hhHHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhC
Q 015613 255 PKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKEC 334 (403)
Q Consensus 255 p~~~~~~~~l~~g~p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~a 334 (403)
....+|+|+.|+|.+||+||||||.+|..+++........+
T Consensus 173 ---------------------------------------~~~~vpkC~vC~~lVKP~IVFfGE~LP~rF~e~~~~D~~~~ 213 (314)
T KOG2682|consen 173 ---------------------------------------MSEVVPKCEVCQGLVKPDIVFFGESLPARFFECMQSDFLKV 213 (314)
T ss_pred ---------------------------------------HhccCCCCchhhccccccEEEecCCccHHHHHHHhhccccc
Confidence 11268999999999999999999999999888888888899
Q ss_pred CeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCC-C---CCcccEEEECcHHHHHHHHHHhCC
Q 015613 335 DAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETR-A---DDLTTLKISARLGEILPRVLDVGS 397 (403)
Q Consensus 335 DllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~-~---d~~~~l~I~~~~~evL~~L~~~~~ 397 (403)
||+|||||||.|+|+++|++.+. ...+-++||.+..- + ....|+-+.|+|++-...|++.++
T Consensus 214 dl~lV~GTSL~V~PFAsLpe~vp-~~v~RlLiNre~~Gp~~~~~r~rDv~~lgd~d~~~eaLvelLG 279 (314)
T KOG2682|consen 214 DLLLVMGTSLQVQPFASLPEKVP-LSVPRLLINREKAGPFLGMIRYRDVAWLGDCDQGVEALVELLG 279 (314)
T ss_pred ceEEEeccceeeeecccchhhhh-hcCceeEecccccCccccCcccccchhhccHHHHHHHHHHHhC
Confidence 99999999999999999999876 46788999998753 1 224788899999999998888765
No 20
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.4e-46 Score=359.82 Aligned_cols=238 Identities=34% Similarity=0.574 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCccCCCCCcCCCCCcccCCCCCcChHHHhhChhHHHHHHHHHHhhhhccccCCCC
Q 015613 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPN 188 (403)
Q Consensus 109 ~~~l~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~p~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn 188 (403)
...+++|++++++|+.+||+|||||||+||||||||++|+|.-..+. .+ ...-.|..|+|+
T Consensus 42 ~~kv~elA~li~~sk~lvv~tGAGISTaa~IPDfRGp~GVWTL~~kG-------~~------------~~~~df~~ArPt 102 (353)
T KOG1905|consen 42 RTKVEELAQLIQQSKHLVVYTGAGISTAAGIPDFRGPQGVWTLQQKG-------KD------------KFGVDFSEARPT 102 (353)
T ss_pred HHHHHHHHHHHhhCCcEEEEeCCccccccCCCCccCCCceeehhhcC-------cc------------ccCCchhhcCCc
Confidence 47899999999999999999999999999999999999999742111 00 111235689999
Q ss_pred HHHHHHHHHHHhCCCceEEeccccchHHHhCCCc---eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhc
Q 015613 189 PAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLD 265 (403)
Q Consensus 189 ~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~---ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~ 265 (403)
.+|++|.+|++.|.+++||||||||||.|+|++. .|+|||++-.+|.+|...|.+..+++.+
T Consensus 103 ~THmai~~Lhr~gll~~viSQNvDGLhlrsGlPr~~LsElHGNmfiEvC~sC~~~yvr~~~v~t~--------------- 167 (353)
T KOG1905|consen 103 VTHMAIVALHRAGLLKHVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCRPEYVRDRVVDTV--------------- 167 (353)
T ss_pred chHHHHHHHHHcchhhhhhhccccchhhccCCCHHHHHHHhcchHHHHhhhhcccceehhheeec---------------
Confidence 9999999999999999999999999999999998 9999999999999999888766544322
Q ss_pred CCCCCCCCCcCcccCCCCCcccccccccccCCC---CCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEcc
Q 015613 266 YGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHI---PTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGS 342 (403)
Q Consensus 266 ~g~p~~~~~~~~~~~pd~d~~i~~~~~~~~~~i---P~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGT 342 (403)
|++ +.+ +.-.. -+|..|-|.++-.+.-++..+|...|+.|.+..++||++|++||
T Consensus 168 ----------gl~--at~----------R~ct~~k~~~~rscrg~l~d~~ldwe~~lpln~l~~a~~a~~~Ad~~lcLGT 225 (353)
T KOG1905|consen 168 ----------GLK--ATG----------RHCTGRKCRKCRSCRGTLRDFGLDWEDELPLNDLDRATKAAKRADLILCLGT 225 (353)
T ss_pred ----------ccc--ccc----------ccccccccccccccccchhhccccccccCCchhhHHHHHHhhhcceEEEecc
Confidence 100 000 00122 34566667778888888888999889999999999999999999
Q ss_pred CcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhCCCCCCC
Q 015613 343 SLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPA 402 (403)
Q Consensus 343 SL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~~~~~~~ 402 (403)
||++.|...++..+.+.|.++++||+++|+-|..++++|++++++||..|++.++++||+
T Consensus 226 SLqI~p~g~lpl~~~k~g~K~~ivNlQ~T~hDk~A~l~Ihg~vd~Vm~~lm~~LgveIp~ 285 (353)
T KOG1905|consen 226 SLQILPKGNLPLKMKKRGGKIVIVNLQWTPHDKIANLKIHGKVDLVMASLMELLGVEIPA 285 (353)
T ss_pred ceEeeeCCCcchhHhccCceEEEEeCccCcccchhheeehhhHHHHHHHHHHHhCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999996
No 21
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=98.83 E-value=3.9e-08 Score=94.10 Aligned_cols=96 Identities=21% Similarity=0.324 Sum_probs=55.1
Q ss_pred CcEEEEeCCCCCccCCCCCcCCC-CCcccCC-CCC-------cChHHHhhChhH-HHHHHHHHH----h-hhhccccCCC
Q 015613 123 AKLIVLTGAGISTECGIPDYRSP-NGAYSSG-FKP-------ITHQQFVRSSRA-RRRYWARSY----A-GWRRFMAAQP 187 (403)
Q Consensus 123 k~IVVlTGAGIStsSGIPdFRs~-~Gly~~~-~~p-------~~~~~f~~~~~~-~~~fw~~~~----~-~~~~~~~a~P 187 (403)
.++|++.|||+|.++|+|++++- ..++... ... ....++..-.+. ...++.... . ........+|
T Consensus 1 g~lvlFiGAG~S~~~glP~W~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (242)
T cd01406 1 GRVVIFVGAGVSVSSGLPDWKTLLDEIASELGLEIDGYSVEAKDENDYLELAELLEKEFGTIGIKINAVLEEKTRPDFEP 80 (242)
T ss_pred CCEEEEecCccccccCCCChHHHHHHHHHHcCCccchhhccccchhhHHHHHHHHHHHhccchhhhHHHHHhccCCCCCC
Confidence 36899999999999999998853 1222110 000 000000000000 000110000 0 0011246789
Q ss_pred CHHHHHHHHHHHhCC-CceEEeccccchHHHh
Q 015613 188 NPAHFALASLEKAGR-IDCMITQNVDRLHHRA 218 (403)
Q Consensus 188 n~~H~~La~L~~~gk-l~~ViTQNIDgLh~rA 218 (403)
++.|.+|+.|...+. ...|||+|.|.|.++|
T Consensus 81 ~~~h~~i~~l~~~~~~~~~iiTTNyD~llE~a 112 (242)
T cd01406 81 SPLHELLLRLFINNEGDVIIITTNYDRLLETA 112 (242)
T ss_pred CHHHHHHHhchhccCCceEEEEcchHHHHHHH
Confidence 999999999987653 5689999999999988
No 22
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=95.99 E-value=0.0087 Score=52.08 Aligned_cols=66 Identities=18% Similarity=0.285 Sum_probs=48.0
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHH
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRV 392 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L 392 (403)
.+.+.+++||++|++|+++.-.......... ....++|.|+.++..... ..++.|.+|+..+|.+|
T Consensus 70 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~-~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 70 AANEALEQADLVLAIGTRLSDFNTYGFSPAF-NPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp HHHHHHHHSSEEEEESSSSSTTTTTTTTGCS-TTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEECCCCcccccccccccc-CCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 4667789999999999988553322211111 113489999999987764 46899999999999876
No 23
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=94.07 E-value=0.41 Score=50.46 Aligned_cols=93 Identities=8% Similarity=0.135 Sum_probs=67.1
Q ss_pred eeecccCcHHHHhhhhccccceecCCchheeeeee------eeecCCCCCCCCCCcCCCCchhcccCCCCCCCCCCCHHH
Q 015613 38 KSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSW------RMSIPGLPSSRHEDKAPASPKVLRDKKAVPDADPPSIED 111 (403)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 111 (403)
+.|-+.|-|.-|.-+.+--++++....+-.|.|-- .+++|+. -- -|-.-.+.++.-+|--..+.++|....
T Consensus 142 ~NDcfrPVSRYfDRItRPEQl~sal~rA~~VmTDPA~~GpvTl~l~QD-Vq--~eA~Dyp~~FF~~rv~~~rR~~Pd~~e 218 (617)
T COG3962 142 TNDCFRPVSRYFDRITRPEQLMSALPRAMRVMTDPADCGPVTLALCQD-VQ--AEAYDYPESFFEKRVWRIRRPPPDERE 218 (617)
T ss_pred cccccccHHHHhhhcCCHHHHHHHHHHHHHHhCChhhcCceEEEechh-hh--hhhcCCcHHhhhhhhhhccCCCCCHHH
Confidence 45889999999999999999998777766665532 5666754 11 111123344444444456667788999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCC
Q 015613 112 INQLYQFFDNSAKLIVLTGAGI 133 (403)
Q Consensus 112 l~~l~~~l~~ak~IVVlTGAGI 133 (403)
+++++++|+.|++-+|+.|.|.
T Consensus 219 L~~A~~lik~ak~PlIvaGGGv 240 (617)
T COG3962 219 LADAAALIKSAKKPLIVAGGGV 240 (617)
T ss_pred HHHHHHHHHhcCCCEEEecCce
Confidence 9999999999999999999773
No 24
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.52 E-value=0.11 Score=56.16 Aligned_cols=69 Identities=13% Similarity=0.254 Sum_probs=51.0
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.+++||++|+||+++..+......... .+.++|.||.++..... ..++.|.+|+..+|..|++.+
T Consensus 265 ~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~~--~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l 335 (574)
T PRK07979 265 EANMTMHNADVIFAVGVRFDDRTTNNLAKYC--PNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELL 335 (574)
T ss_pred HHHHHHHhCCEEEEeCCCCcccccCChhhcC--CCCeEEEEECCHHHhCCcccCCeEEecCHHHHHHHHHHhh
Confidence 3556788999999999998665432221112 25689999998876544 467999999999999997754
No 25
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.43 E-value=0.1 Score=56.28 Aligned_cols=69 Identities=14% Similarity=0.191 Sum_probs=50.8
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.+++||++|+||+++..+........ ..+.++|.||.++..... ..++.|.+|+.++|..|++.+
T Consensus 265 ~~~~~~~~aD~vl~vG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l 335 (572)
T PRK08979 265 EANMAMHNADLIFGIGVRFDDRTTNNLEKY--CPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALL 335 (572)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCchhhc--CCCCeEEEEECCHHHhCCccCCceEEecCHHHHHHHHHHhh
Confidence 456677899999999999876543222111 235689999998876543 468999999999999998754
No 26
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.29 E-value=0.12 Score=56.32 Aligned_cols=69 Identities=14% Similarity=0.266 Sum_probs=50.3
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.+++||++|+|||++.......+... ..+.++|.||.++..... ..++.|.+|+..+|++|++.+
T Consensus 283 ~~~~~l~~aDlvL~vG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l 353 (616)
T PRK07418 283 YANFAVTECDLLIAVGARFDDRVTGKLDEF--ASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERS 353 (616)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCChhhc--CCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHHhh
Confidence 355677899999999999865432212111 235789999998765543 568999999999999998755
No 27
>PRK05858 hypothetical protein; Provisional
Probab=93.16 E-value=0.21 Score=53.48 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=56.1
Q ss_pred cCCCCcHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHH
Q 015613 315 FGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRV 392 (403)
Q Consensus 315 FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L 392 (403)
|.|.+|...-..+.+.++++|++|+||+++........ . ..+.++|.|+.++..... ..++.|.+|+..+|++|
T Consensus 244 ~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~~~~~~~--~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L 319 (542)
T PRK05858 244 VPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFGV--F--GGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSAL 319 (542)
T ss_pred CCCCCchhhhHHHHHHHHhCCEEEEECCCCcccccccc--c--CCCCEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHH
Confidence 56666655444456778899999999998754322211 1 225789999998765544 46789999999999999
Q ss_pred HHhC
Q 015613 393 LDVG 396 (403)
Q Consensus 393 ~~~~ 396 (403)
.+.+
T Consensus 320 ~~~l 323 (542)
T PRK05858 320 AGAG 323 (542)
T ss_pred HHhc
Confidence 8754
No 28
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.07 E-value=0.14 Score=55.26 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=50.8
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.+++||++|+||+++..+........ ..+.++|.||.++..... ..++.|.+|+.++|..|++.+
T Consensus 265 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~--~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 335 (574)
T PRK06882 265 EANNAMHESDLILGIGVRFDDRTTNNLAKY--CPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLL 335 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc--CCCCeEEEEECCHHHhcCccCCceEEecCHHHHHHHHHHHh
Confidence 355678899999999999876553222222 235689999988766543 467899999999999997754
No 29
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.82 E-value=0.16 Score=54.88 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=50.7
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.+++||++|+||+++........... ..+.++|.||.++..... ..++.|.+|+.++|..|++.+
T Consensus 265 ~~~~~l~~aD~il~vG~~~~~~~~~~~~~~--~~~~~vi~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l 335 (574)
T PRK06466 265 EANMAMHHADVILAVGARFDDRVTNGPAKF--CPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAIL 335 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc--CCCCeEEEEECCHHHhCCccCCCeEEecCHHHHHHHHHHHh
Confidence 355678899999999999876443222111 225689999998876554 468999999999999997754
No 30
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=92.57 E-value=0.14 Score=55.55 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=49.3
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
+.+.+++||++|+||++|........-.. ..+.++|.||.++..+.. ..++.|.+|+..+|++|.+.+
T Consensus 263 a~~~l~~aD~iL~lG~~l~~~~t~~~~~~--~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 332 (588)
T TIGR01504 263 GNATLLESDFVFGIGNRWANRHTGSVDVY--TEGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVA 332 (588)
T ss_pred HHHHHHhCCEEEEECCCCCccccCccccc--CCCCeEEEeeCCHHHhcCcCCCCeEEEeCHHHHHHHHHHHh
Confidence 45677899999999999865432111111 236779999988776543 467899999999999998753
No 31
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=92.50 E-value=0.24 Score=53.12 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=54.2
Q ss_pred ecCCCCcHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCC--CcccEEEECcHHHHHHH
Q 015613 314 FFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRAD--DLTTLKISARLGEILPR 391 (403)
Q Consensus 314 ~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d--~~~~l~I~~~~~evL~~ 391 (403)
.|.|.+|...-..+.+.+++||++|+||+.+.-+......... ..+.++|.|+.++.... ...++.|.+|+.++|.+
T Consensus 246 ~~p~~hp~~~g~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~-~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~l~~ 324 (554)
T TIGR03254 246 LLPDTHPQSAAAARSFALAEADVVMLVGARLNWLLSHGKGKLW-GEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQA 324 (554)
T ss_pred eCCCCCchhhhHHHHHHHhcCCEEEEECCCCchhhccCchhhc-CCCCcEEEcCCCHHHhCCCcCCceEEecCHHHHHHH
Confidence 4566666432223445788999999999998643321110011 22568888988765443 34678899999999999
Q ss_pred HHHhC
Q 015613 392 VLDVG 396 (403)
Q Consensus 392 L~~~~ 396 (403)
|++.+
T Consensus 325 L~~~l 329 (554)
T TIGR03254 325 LLSAA 329 (554)
T ss_pred HHHHh
Confidence 98754
No 32
>PLN02470 acetolactate synthase
Probab=92.43 E-value=0.2 Score=54.22 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=48.9
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
+.+.+++||++|+||+++..+......... ...++|.||.++..+.. ..++.|.+|+..+|..|.+.+
T Consensus 273 ~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~--~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l 342 (585)
T PLN02470 273 ANYAVDSADLLLAFGVRFDDRVTGKLEAFA--SRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLL 342 (585)
T ss_pred HHHHHHhCCEEEEECCCCcccccCChhhcC--CCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhh
Confidence 456778999999999998654322111111 24578999998866543 457899999999999998754
No 33
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.30 E-value=0.2 Score=54.40 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=50.1
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.+++||++|+||+++........... ..+.++|.||.++..... ..++.|.+|+..+|.+|++.+
T Consensus 273 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~--~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 343 (595)
T PRK09107 273 EANMAMHDCDVMLCVGARFDDRITGRLDAF--SPNSKKIHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLW 343 (595)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhh
Confidence 355677899999999998865432222111 135679999998876554 468899999999999998754
No 34
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=92.28 E-value=0.21 Score=54.05 Aligned_cols=68 Identities=16% Similarity=0.302 Sum_probs=48.8
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHhC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRAD--DLTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d--~~~~l~I~~~~~evL~~L~~~~ 396 (403)
+.+.+++||++|+||+++..+.....-.. ..+.++|.||.++.... ...++.|.+|+.++|..|++.+
T Consensus 277 ~~~~l~~aDlvL~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 346 (585)
T CHL00099 277 ANFAVSECDLLIALGARFDDRVTGKLDEF--ACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELL 346 (585)
T ss_pred HHHHHHhCCEEEEECCCCcccccCCHhHc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHHh
Confidence 44567899999999999865432211111 23678999998876543 2457899999999999998754
No 35
>PRK08322 acetolactate synthase; Reviewed
Probab=92.26 E-value=0.23 Score=53.05 Aligned_cols=68 Identities=9% Similarity=0.156 Sum_probs=50.7
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+...+++||++|++|+++...+...+. ...+.++|.||.++...+. ..++.|.+|+.++|++|.+.+
T Consensus 255 ~~~~~l~~aDlil~lG~~l~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 324 (547)
T PRK08322 255 YVHCAIEHADLIINVGHDVIEKPPFFMN---PNGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERL 324 (547)
T ss_pred HHHHHHHhCCEEEEECCCCccccccccC---CCCCCeEEEEeCCHHHcCCCcCCCeEEecCHHHHHHHHHHhc
Confidence 3556778999999999998765432221 1235689999998876543 467899999999999998754
No 36
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=92.21 E-value=0.2 Score=54.54 Aligned_cols=69 Identities=12% Similarity=0.203 Sum_probs=49.4
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRAD--DLTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d--~~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.++++|++|+||+++..+....+... ..+.++|.||.++.... ...++.|.+|+.++|..|.+.+
T Consensus 290 ~~~~~l~~aDlvL~lG~~l~~~~t~~~~~~--~~~~~~i~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l 360 (612)
T PRK07789 290 AAVAALQRSDLLIALGARFDDRVTGKLDSF--APDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAAL 360 (612)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhhc--CCCCcEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhh
Confidence 355778899999999999865432111111 13567999998875433 3568999999999999998754
No 37
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.14 E-value=0.22 Score=53.61 Aligned_cols=68 Identities=21% Similarity=0.265 Sum_probs=48.9
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
+.+.+++||++|+||+++.......+-.. ....++|.||.++..+.. ..++.|.+|+.++|..|++.+
T Consensus 263 ~~~~l~~aD~vl~lG~~l~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 332 (563)
T PRK08527 263 ANMAMSECDLLISLGARFDDRVTGKLSEF--AKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEEL 332 (563)
T ss_pred HHHHHHhCCEEEEeCCCCCccccCChhhc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhh
Confidence 45677899999999999865432222111 225679999998765543 457899999999999998754
No 38
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.13 E-value=0.21 Score=53.97 Aligned_cols=69 Identities=17% Similarity=0.216 Sum_probs=49.9
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.+++||++|+||+++..+........ ..+.++|.||.++..+.. ..++.|.+|+.++|+.|.+.+
T Consensus 273 ~~~~~l~~aDlil~vG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l 343 (570)
T PRK06725 273 AANMAVTECDLLLALGVRFDDRVTGKLELF--SPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMS 343 (570)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCccccc--CCCCeEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhc
Confidence 355678899999999999865432111111 124578999988876544 467899999999999998754
No 39
>PRK07524 hypothetical protein; Provisional
Probab=92.05 E-value=0.18 Score=53.85 Aligned_cols=72 Identities=11% Similarity=0.074 Sum_probs=50.1
Q ss_pred HHHHHHHhhCCeEEEEccCcchhhHHH-HHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 015613 325 DKAMEAAKECDAFLVLGSSLMTMSAYR-LVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 397 (403)
Q Consensus 325 ~~a~~~~~~aDllLVVGTSL~V~p~~~-lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~~ 397 (403)
..+.+.++++|++|+||+++....... ..... ..+.++|.||.++..... ..++.|.+|+.++|.+|.+.+.
T Consensus 255 ~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 329 (535)
T PRK07524 255 PAVRALIAEADVVLAVGTELGETDYDVYFDGGF-PLPGELIRIDIDPDQLARNYPPALALVGDARAALEALLARLP 329 (535)
T ss_pred HHHHHHHHhCCEEEEeCCCcCcccccccccccc-CCCCCEEEEECCHHHhCCCcCCCceEecCHHHHHHHHHHhcc
Confidence 346677889999999999875432210 00011 235679999988765433 4678999999999999988653
No 40
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=92.05 E-value=0.24 Score=53.59 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=52.1
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+...+++|||||+||+.+.-.... +...+.. .. +|-|+.++...+. ..++.|.+|+.++|.+|++.+
T Consensus 259 ~a~~~~~~aDlll~vG~rf~~~~~~-~~~f~~~-~~-ii~iDidp~ei~k~~~~~~~i~gD~~~~l~~L~~~l 328 (550)
T COG0028 259 AANEALEEADLLLAVGARFDDRVTG-YSGFAPP-AA-IIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEEL 328 (550)
T ss_pred HHHHHhhcCCEEEEecCCCcccccc-hhhhCCc-CC-EEEEeCChHHhCCCCCCCeeEeccHHHHHHHHHHhh
Confidence 4567788999999999999855444 3333332 22 9999999887765 578999999999999998765
No 41
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=92.03 E-value=0.23 Score=53.55 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=49.5
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.+++||++|+||+++.-......-... .+.++|.||.++..+.. ..++.|.+|+..+|..|++.+
T Consensus 269 ~~~~~~~~aD~vl~lG~~l~~~~~~~~~~~~--~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 339 (566)
T PRK07282 269 AANIAMTEADFMINIGSRFDDRLTGNPKTFA--KNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKALQMLLAEP 339 (566)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhhcC--CCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhh
Confidence 3556788999999999998643221111111 25679999988776544 357899999999999998754
No 42
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=91.83 E-value=0.23 Score=53.30 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=49.5
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.++++|++|+||+.+.......+-... .+.++|.||.++..... ..++.|.+|+.++|++|.+.+
T Consensus 260 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~--~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 330 (558)
T TIGR00118 260 TANLAVHECDLIIAVGARFDDRVTGNLAKFA--PNAKIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKL 330 (558)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhcC--CCCcEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhh
Confidence 3456778999999999998654321111111 25689999988765433 457999999999999998755
No 43
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=91.53 E-value=0.36 Score=52.01 Aligned_cols=82 Identities=15% Similarity=0.196 Sum_probs=54.1
Q ss_pred ecCCCCcHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHH
Q 015613 314 FFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPR 391 (403)
Q Consensus 314 ~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~ 391 (403)
.|.|.+|...-......+++||++|++|+++.-+......... ..+.++|.|+.++..... ..++.|.+|+..+|++
T Consensus 253 ~~~e~hpl~~G~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~-~~~~~ii~Id~d~~~~~~~~~~~~~i~~D~~~~L~~ 331 (569)
T PRK09259 253 LLPDTHPQSAAAARSLALANADVVLLVGARLNWLLSHGKGKTW-GADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQA 331 (569)
T ss_pred cCCCCChhhhhHHHHHHHhcCCEEEEeCCCCchhcccCchhcc-CCCCcEEEecCChHHhcCCccCceeEecCHHHHHHH
Confidence 3667666532223345688999999999998543211110011 135789999888765443 4578899999999999
Q ss_pred HHHhC
Q 015613 392 VLDVG 396 (403)
Q Consensus 392 L~~~~ 396 (403)
|++.+
T Consensus 332 L~~~l 336 (569)
T PRK09259 332 LLAGL 336 (569)
T ss_pred HHHHh
Confidence 98754
No 44
>PRK06154 hypothetical protein; Provisional
Probab=91.51 E-value=0.29 Score=52.86 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=49.2
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.+++||++|+||++|..+.... . -..+.++|.|+.++..... ..++.|.+|+.++|..|++.+
T Consensus 273 ~~~~~~~~aDlvL~lG~~l~~~~~~~---~-~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l 341 (565)
T PRK06154 273 TVAHFLREADVLFGIGCSLTRSYYGL---P-MPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEEL 341 (565)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCc---c-CCCCCeEEEEECCHHHhccccCCCeeEEcCHHHHHHHHHHHh
Confidence 35567889999999999987532211 1 1235789999988765433 467899999999999998754
No 45
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=91.50 E-value=0.28 Score=52.74 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=49.1
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 397 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~~ 397 (403)
+.+.++++|++|+||+++........... ..+.++|.||.++..... ..++.|.+|+..+|+.|++.+.
T Consensus 267 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 337 (561)
T PRK06048 267 ANYAIQESDLIIAVGARFDDRVTGKLASF--APNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYVQ 337 (561)
T ss_pred HHHHHHhCCEEEEECCCCCccccCChhhc--CCCCeEEEEECCHHHhCCCCCCCeEEEeCHHHHHHHHHHhcc
Confidence 45678899999999999864322111111 235679999988765433 4678999999999999988653
No 46
>PRK11269 glyoxylate carboligase; Provisional
Probab=91.48 E-value=0.27 Score=53.31 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=49.1
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
+.+.+++||++|+||+.+.......+-.. ..+.++|.|+.++..+.. ..++.|.+|+..+|..|++.+
T Consensus 264 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~~--~~~~~~i~Vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 333 (591)
T PRK11269 264 GNATLLASDFVLGIGNRWANRHTGSVEVY--TKGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVA 333 (591)
T ss_pred HHHHHHhCCEEEEeCCCCCccccCchhhc--CCCCeEEEeeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHHh
Confidence 45667899999999999865332111111 235689999988776543 467899999999999998754
No 47
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=91.35 E-value=0.35 Score=51.69 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=48.8
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
+.+.+++||++|++|+++..+....+. ...+.++|.||.++..... ..++.|.+|+.++|..|.+.+
T Consensus 256 ~~~~~~~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 324 (539)
T TIGR02418 256 GDRLLKQADLVITIGYDPIEYEPRNWN---SENDATIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERI 324 (539)
T ss_pred HHHHHHhCCEEEEecCcccccCccccC---cCCCCeEEEEeCChHHcCCccCCCeEEecCHHHHHHHHHHhh
Confidence 456788999999999987643321111 1224689999999876544 467899999999999998754
No 48
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=91.33 E-value=0.35 Score=52.01 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=49.5
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
+.+.++++|++|+||+++........-.. ..+.++|.||.++..... ..++.|.+|+.++|.+|++.+
T Consensus 271 ~~~~l~~aDlvl~lG~~~~~~~~~~~~~~--~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 340 (564)
T PRK08155 271 TNYILQEADLLIVLGARFDDRAIGKTEQF--CPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLV 340 (564)
T ss_pred HHHHHHhCCEEEEECCCCCccccCCHhhc--CCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhh
Confidence 45677899999999999866432211111 235679999998876544 467899999999999997754
No 49
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=91.31 E-value=0.25 Score=53.28 Aligned_cols=69 Identities=12% Similarity=0.123 Sum_probs=49.2
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC-cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~-~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.++++|++|+||+.+.......+... ..+.++|.||.++..... ..++.|.+|+..+|++|++.+
T Consensus 277 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l 346 (578)
T PRK06112 277 HLRDLVREADVVLLVGTRTNQNGTDSWSLY--PEQAQYIHIDVDGEEVGRNYEALRLVGDARLTLAALTDAL 346 (578)
T ss_pred HHHHHHHhCCEEEEECCCCCcccccccccc--CCCCeEEEEECChHHhCccccceEEEeCHHHHHHHHHHhh
Confidence 456678899999999998875443222111 235789999988755432 236889999999999998754
No 50
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=91.14 E-value=0.3 Score=53.00 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=47.8
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.+++||++|+||+++... .+.. ...++++|.|+.++..... ..++.|.+|+..+|.+|++.+
T Consensus 265 ~a~~~~~~aDlvl~lG~~~~~~---~~~~--~~~~~~~i~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 332 (597)
T PRK08273 265 PSYELMRECDTLLMVGSSFPYS---EFLP--KEGQARGVQIDIDGRMLGLRYPMEVNLVGDAAETLRALLPLL 332 (597)
T ss_pred HHHHHHHhCCEEEEeCCCCCHH---hcCC--CCCCCeEEEEeCCHHHcCCCCCCCceEecCHHHHHHHHHHhh
Confidence 4556788999999999997421 1111 1125689999988766543 457889999999999998754
No 51
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=91.01 E-value=0.61 Score=48.58 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=48.7
Q ss_pred HHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 328 MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+ ++|++|+||+.+.......+. ...+.++|.|+.++...+. ..++.|.+|+.++|..|++.+
T Consensus 270 ~~~~-~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~l~~~~ 336 (432)
T TIGR00173 270 REEL-QPDLVIRFGGPPVSKRLRQWL---ARQPAEYWVVDPDPGWLDPSHHATTRLEASPAEFAEALAGLL 336 (432)
T ss_pred hhhC-CCCEEEEeCCCcchhHHHHHH---hCCCCcEEEECCCCCccCCCCCceEEEEECHHHHHHHhhhcc
Confidence 3445 899999999998665444432 1235789999998877654 457889999999999987755
No 52
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=90.99 E-value=0.34 Score=52.14 Aligned_cols=69 Identities=23% Similarity=0.235 Sum_probs=49.6
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
+.+.+++||++|+||+++...+....... ...+.+++.||.++..... ..++.|.+|+.++|..|++.+
T Consensus 267 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 337 (572)
T PRK06456 267 ASMAALESDAMLVVGARFSDRTFTSYDEM-VETRKKFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAI 337 (572)
T ss_pred HHHHHHhCCEEEEECCCCchhhccccccc-cCCCCeEEEEeCChHHhCCccCCCeEEecCHHHHHHHHHHHh
Confidence 45667899999999999866543222111 1225689999988876543 467899999999999987754
No 53
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=90.95 E-value=0.27 Score=53.11 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=47.9
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCC-----CcccEEEECcHHHHHHHHHHhCC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRAD-----DLTTLKISARLGEILPRVLDVGS 397 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d-----~~~~l~I~~~~~evL~~L~~~~~ 397 (403)
+.+.++++||+|+||+.+...+... . ...+.++|.||.++.... ...++.|.+|+..+|++|++.+.
T Consensus 273 ~~~~~~~aDlvl~lG~~l~~~~~~~--~--~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 344 (569)
T PRK08327 273 PRADLAEADLVLVVDSDVPWIPKKI--R--PDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLK 344 (569)
T ss_pred cchhhhhCCEEEEeCCCCCCccccc--c--CCCCCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHHh
Confidence 4566789999999999875432211 1 123568999998876432 24578999999999999987653
No 54
>PRK08611 pyruvate oxidase; Provisional
Probab=90.86 E-value=0.47 Score=51.28 Aligned_cols=63 Identities=11% Similarity=0.154 Sum_probs=47.5
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
+.+.++++|++|+||+++..... ...+.++|.||.++..... ..++.|.+|+..+|..|.+.+
T Consensus 261 a~~~l~~aDlvl~iG~~~~~~~~-------~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l 325 (576)
T PRK08611 261 AYEAMQEADLLIMVGTNYPYVDY-------LPKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLTENI 325 (576)
T ss_pred HHHHHHhCCEEEEeCCCCCcccc-------CCCCCcEEEEeCCHHHcCCccCCCeeEecCHHHHHHHHHHhc
Confidence 45677899999999998743221 1224689999998766544 457889999999999998755
No 55
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=90.85 E-value=0.31 Score=52.20 Aligned_cols=68 Identities=15% Similarity=0.292 Sum_probs=48.2
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHh
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDV 395 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~ 395 (403)
.+...+++||++|++|+++...-...+-.. ..+.++|.||.++..... ..++.|.+|+.++|++|.+.
T Consensus 255 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~ 324 (548)
T PRK08978 255 AANLAVQECDLLIAVGARFDDRVTGKLNTF--APHAKVIHLDIDPAEINKLRQAHVALQGDLNALLPALQQP 324 (548)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCCcccc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHh
Confidence 355677899999999998865322111111 124679999988765543 46899999999999998764
No 56
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.74 E-value=0.42 Score=51.82 Aligned_cols=70 Identities=13% Similarity=0.220 Sum_probs=49.7
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.+++||++|+||+++..+.....-.. ...+.++|.||.++..+.. ..++.|.+|+.++|..|++.+
T Consensus 280 ~a~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 351 (587)
T PRK06965 280 EANMAMQHCDVLIAIGARFDDRVIGNPAHF-ASRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQL 351 (587)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCChhhc-CCCCceEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhh
Confidence 355678899999999999865432111011 1234789999988765433 468899999999999998754
No 57
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=90.33 E-value=0.38 Score=52.09 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=48.9
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.+++||++|++|+.+........... ..+.++|.||.++..... ..++.|.+|+..+|+.|++.+
T Consensus 262 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l 332 (586)
T PRK06276 262 AANYSVTESDVLIAIGCRFSDRTTGDISSF--APNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAEL 332 (586)
T ss_pred HHHHHHHcCCEEEEECCCCCccccCCcccc--CCCCeEEEEECCHHHhCCcCCCceEEecCHHHHHHHHHHhh
Confidence 455678899999999998754322111111 235678999988766543 457899999999999998754
No 58
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=90.33 E-value=0.32 Score=52.64 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=48.9
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHH-HHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYR-LVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~-lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
+.+.+++||++|+||++|.-..... .-......+.++|.|+.++..+.. ..++.|.+|+..+|+.|++.+
T Consensus 260 ~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 332 (588)
T PRK07525 260 AMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSVGICGDAKAVARELLARL 332 (588)
T ss_pred HHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCCCCceEecCHHHHHHHHHHhh
Confidence 4567889999999999986432110 000001236789999988765533 467889999999999998765
No 59
>PRK08266 hypothetical protein; Provisional
Probab=90.12 E-value=0.28 Score=52.40 Aligned_cols=67 Identities=19% Similarity=0.192 Sum_probs=48.3
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC-cccEEEECcHHHHHHHHHHhC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~-~~~l~I~~~~~evL~~L~~~~ 396 (403)
+.+.+++||++|++|+++... ...+.. ...+.++|.||.++..... ..++.|.+|+.++|+.|++.+
T Consensus 257 ~~~~~~~aDlvl~lG~~~~~~-~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l 324 (542)
T PRK08266 257 AYELWPQTDVVIGIGSRLELP-TFRWPW--RPDGLKVIRIDIDPTEMRRLKPDVAIVADAKAGTAALLDAL 324 (542)
T ss_pred HHHHHHhCCEEEEeCCCcCcc-cccccc--cCCCCcEEEEECCHHHhCCcCCCceEecCHHHHHHHHHHhh
Confidence 456778999999999998765 222211 1235689999887654332 468899999999999998754
No 60
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=89.94 E-value=0.43 Score=51.28 Aligned_cols=71 Identities=14% Similarity=0.121 Sum_probs=49.6
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHH-HhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAA-HEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a-~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.+++||++|+||+++...+...+.... .....++|.|+.++...+. ..++.|.+|+..+|+.|++..
T Consensus 263 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~~ 336 (557)
T PRK08199 263 ALAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGRVYRPDLAIVADPAAFAAALAALE 336 (557)
T ss_pred HHHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHhcc
Confidence 3456778999999999988654432111111 0125679999988866543 467999999999999998743
No 61
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=89.93 E-value=0.55 Score=50.84 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=48.1
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 397 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~~ 397 (403)
.+.+.+++||++|+||+++... .+ . .+.++|.||.++..+.. ..++.|.+|+..+|+.|++.+.
T Consensus 258 ~~~~~l~~aDlvl~lG~~~~~~---~~---~--~~~~~I~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~L~ 323 (578)
T PRK06546 258 AAHEAMHEADLLILLGTDFPYD---QF---L--PDVRTAQVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLVK 323 (578)
T ss_pred HHHHHHHhCCEEEEEcCCCChh---hc---C--CCCcEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhc
Confidence 3456678999999999987521 11 1 24579999988876543 4678999999999999987653
No 62
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=89.61 E-value=0.39 Score=51.92 Aligned_cols=69 Identities=19% Similarity=0.204 Sum_probs=49.1
Q ss_pred HHHHHHhhCCeEEEEccCcchhhH---HHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSA---YRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~---~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.+++||++|+||+.+..... +... ....++++|.|+.++..+.. ..++.|.+|+..+|.+|++.+
T Consensus 255 ~~~~~l~~aDlil~lG~~~~~~~~~~~~~~~--~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 328 (579)
T TIGR03457 255 AAMKLISDADVVLALGTRLGPFGTLPQYGID--YWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRL 328 (579)
T ss_pred HHHHHHHhCCEEEEECCCCcccccccccccc--cCCCCCeEEEEeCCHHHhCCCCCCCeeEecCHHHHHHHHHHhh
Confidence 355678899999999998863211 1110 11236789999988765543 467899999999999998765
No 63
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=89.55 E-value=0.53 Score=50.77 Aligned_cols=69 Identities=22% Similarity=0.249 Sum_probs=48.3
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.++++|++|++|+++............ .+.++|.|+.++..... ..++.|.+|+..+|.+|++.+
T Consensus 274 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~--~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~~ 344 (571)
T PRK07710 274 TANMALYECDLLINIGARFDDRVTGNLAYFA--KEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQE 344 (571)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCchhhcC--CCCeEEEEECCHHHhcCcCCCCeEEecCHHHHHHHHHHhh
Confidence 3456678999999999998653221111112 25678899988765433 457899999999999998743
No 64
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=88.58 E-value=0.84 Score=49.24 Aligned_cols=63 Identities=16% Similarity=0.277 Sum_probs=47.2
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
+.+.+++||++|+||+++.... + . ..+.++|.||.++..... ..++.|.+|+.++|..|++.+
T Consensus 259 ~~~~~~~aDlvl~lG~~~~~~~---~---~-~~~~~ii~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 323 (574)
T PRK09124 259 GYHAMMNCDTLLMLGTDFPYRQ---F---Y-PTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLL 323 (574)
T ss_pred HHHHHHhCCEEEEECCCCCccc---c---c-CCCCcEEEeeCCHHHhCCCCCCCeEEEccHHHHHHHHHHhh
Confidence 3467789999999999875321 1 1 224689999998876544 467899999999999997654
No 65
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=88.24 E-value=0.39 Score=33.00 Aligned_cols=14 Identities=43% Similarity=1.061 Sum_probs=10.9
Q ss_pred eeeEEcCCCCcccc
Q 015613 229 VYTVVCLDCGFSFC 242 (403)
Q Consensus 229 ~~~~~C~~C~~~~~ 242 (403)
++..+|.+|++.+.
T Consensus 3 ~Y~y~C~~Cg~~fe 16 (41)
T smart00834 3 IYEYRCEDCGHTFE 16 (41)
T ss_pred CEEEEcCCCCCEEE
Confidence 35679999998764
No 66
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=88.00 E-value=0.36 Score=43.36 Aligned_cols=11 Identities=36% Similarity=1.093 Sum_probs=9.6
Q ss_pred CCCCCCCCCCc
Q 015613 297 HIPTCQKCNGV 307 (403)
Q Consensus 297 ~iP~Cp~Cgg~ 307 (403)
.+|.||+||+.
T Consensus 129 ~l~~Cp~C~~~ 139 (146)
T PF07295_consen 129 RLPPCPKCGHT 139 (146)
T ss_pred cCCCCCCCCCC
Confidence 68999999974
No 67
>PRK08617 acetolactate synthase; Reviewed
Probab=87.92 E-value=0.81 Score=49.06 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=48.0
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
+.+.++++|++|++|+++..+....+. ...+.++|.||.++...+. ..++.|.+|+..+|+.|++.+
T Consensus 262 ~~~~~~~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 330 (552)
T PRK08617 262 GDELLKKADLVITIGYDPIEYEPRNWN---SEGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKL 330 (552)
T ss_pred HHHHHHhCCEEEEecCccccccccccc---cCCCCcEEEEeCChHHhCCccCCCeEEeCCHHHHHHHHHHhh
Confidence 445678999999999987543221110 1124689999998876654 467889999999999997643
No 68
>PF04574 DUF592: Protein of unknown function (DUF592); InterPro: IPR007654 This N-terminal region is found in SIR2 proteins (IPR003000 from INTERPRO) and its homologues. Its function is uncharacterised.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0017136 NAD-dependent histone deacetylase activity, 0051287 NAD binding, 0006342 chromatin silencing, 0006355 regulation of transcription, DNA-dependent, 0006476 protein deacetylation; PDB: 2HJH_B.
Probab=87.20 E-value=0.47 Score=42.70 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHhhhhccccceecCCchheeeeeeeeecCCCCCC
Q 015613 47 KAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSS 82 (403)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 82 (403)
-..+...+.|.+++..|.++|+.+.+ |.+..+
T Consensus 27 ~tk~~~~~aR~fLK~~G~~kFLd~YL----Pe~~ns 58 (153)
T PF04574_consen 27 ITKEDILNARMFLKYYGLMKFLDKYL----PEEANS 58 (153)
T ss_dssp ------------------------------------
T ss_pred CCHHHHHHHHHHHHHhCHHHHHHHhC----CCCCcH
Confidence 34566788999999999999999887 765433
No 69
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=87.18 E-value=0.98 Score=48.84 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=46.3
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
+.+.+++||++|+||+++...... ... ..+..+|.||.++..... ..++.|.+|+..+|.+|++.+
T Consensus 258 ~~~~l~~aDlvl~vG~~~~~~~~~---~~~-~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 325 (575)
T TIGR02720 258 ANEALFQADLVLFVGNNYPFAEVS---KAF-KNTKYFIQIDIDPAKLGKRHHTDIAVLADAKKALAAILAQV 325 (575)
T ss_pred HHHHHHhCCEEEEeCCCCCccccc---ccc-CCCceEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhc
Confidence 456778999999999987532221 111 124455889888765443 467899999999999998755
No 70
>PRK11032 hypothetical protein; Provisional
Probab=86.87 E-value=0.46 Score=43.34 Aligned_cols=10 Identities=40% Similarity=1.069 Sum_probs=9.2
Q ss_pred CCCCCCCCCC
Q 015613 297 HIPTCQKCNG 306 (403)
Q Consensus 297 ~iP~Cp~Cgg 306 (403)
.+|.||+||+
T Consensus 141 ~i~pCp~C~~ 150 (160)
T PRK11032 141 VLPLCPKCGH 150 (160)
T ss_pred cCCCCCCCCC
Confidence 6899999997
No 71
>PRK07064 hypothetical protein; Provisional
Probab=86.43 E-value=1.1 Score=48.01 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=48.8
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.+++||++|+||+.+......... . ....+++.||.++...+. ..++.|.+|+..+|.+|.+.+
T Consensus 257 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~-~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 326 (544)
T PRK07064 257 AVEALYKTCDLLLVVGSRLRGNETLKYS-L--ALPRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRL 326 (544)
T ss_pred HHHHHHHhCCEEEEecCCCCcccccccc-c--CCCCceEEEeCCHHHhCCcCCCCceEecCHHHHHHHHHHhh
Confidence 3567788999999999988654432221 1 113478999988765433 467889999999999998754
No 72
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=85.75 E-value=1.4 Score=46.89 Aligned_cols=55 Identities=16% Similarity=0.286 Sum_probs=42.8
Q ss_pred HHHHhhCCeEEEEccCcch-h-hHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEE
Q 015613 328 MEAAKECDAFLVLGSSLMT-M-SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 382 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V-~-p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~ 382 (403)
.+.+..+|++|++|+.... . ...+.+..++++|+++|.|++..+.....+|+.|.
T Consensus 152 ~~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~ta~~Ad~~l~ 208 (501)
T cd02766 152 PEDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTATAARADLHIQ 208 (501)
T ss_pred HHHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCccHHHhCeeec
Confidence 3567899999999987654 2 34455566788999999999999988777777654
No 73
>PLN02573 pyruvate decarboxylase
Probab=85.72 E-value=0.68 Score=50.19 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=45.8
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.+++||++|+||++|........... ..+.++|.||.++..+....++.+. ++..+|..|++.+
T Consensus 284 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~--~~~~~~I~id~d~~~i~~~~~~~~~-~~~~~l~~L~~~l 351 (578)
T PLN02573 284 FCAEIVESADAYLFAGPIFNDYSSVGYSLL--LKKEKAIIVQPDRVTIGNGPAFGCV-LMKDFLEALAKRV 351 (578)
T ss_pred HHHHHHHhCCEEEEECCccCCccccccccc--CCCCcEEEEeCCEEEECCcceECCc-CHHHHHHHHHHHh
Confidence 345667899999999998865443221111 2356799999988776554444444 6888888887754
No 74
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=84.47 E-value=2.1 Score=45.99 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=44.4
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHH
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRV 392 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L 392 (403)
.+.+.+++||++|++|+++.... + ...+.++|.||.++..... ..++.|.+|+..+|..+
T Consensus 252 ~~~~~l~~aDlvl~lG~~~~~~~---~----~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~~ 313 (549)
T PRK06457 252 PSIEAMDKADLLIMLGTSFPYVN---F----LNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAEFLNID 313 (549)
T ss_pred HHHHHHHhCCEEEEECCCCChhh---c----CCCCCcEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHH
Confidence 34567789999999999985322 1 1225689999998876543 56789999999999543
No 75
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=84.31 E-value=0.82 Score=32.22 Aligned_cols=14 Identities=36% Similarity=0.982 Sum_probs=11.2
Q ss_pred eeeEEcCCCCcccc
Q 015613 229 VYTVVCLDCGFSFC 242 (403)
Q Consensus 229 ~~~~~C~~C~~~~~ 242 (403)
++..+|.+||..+.
T Consensus 3 ~Yey~C~~Cg~~fe 16 (42)
T PF09723_consen 3 IYEYRCEECGHEFE 16 (42)
T ss_pred CEEEEeCCCCCEEE
Confidence 46789999998764
No 76
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=83.45 E-value=1.2 Score=47.66 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=47.2
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC-cccEEEECcHHHHHHHHHHhCC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKISARLGEILPRVLDVGS 397 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~-~~~l~I~~~~~evL~~L~~~~~ 397 (403)
.+.+.++++|++|++|+++..+......... ..+.++|.||.++..... ..++.|.+|+..+|.+|++.+.
T Consensus 265 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (530)
T PRK07092 265 KISALLDGHDLVLVIGAPVFTYHVEGPGPHL-PEGAELVQLTDDPGEAAWAPMGDAIVGDIRLALRDLLALLP 336 (530)
T ss_pred HHHHHHhhCCEEEEECCcccccccCCccccC-CCCCeEEEEeCChHHhcCCCCCCcccCCHHHHHHHHHHhhc
Confidence 4556788999999999874222111110011 235678999988765432 3567899999999999988653
No 77
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=82.74 E-value=3 Score=43.77 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=42.0
Q ss_pred HHHHhhCCeEEEEccCcch-h-hHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECc
Q 015613 328 MEAAKECDAFLVLGSSLMT-M-SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISAR 384 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V-~-p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~ 384 (403)
.+.+.++|++|++|+...+ . .....+..++++|+++|.|++..+.....+|..|.=+
T Consensus 165 ~~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~ta~~Ad~~l~i~ 223 (461)
T cd02750 165 SADWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSAKHADLWVPIK 223 (461)
T ss_pred hhHHhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcchhhcCEEeccC
Confidence 3456889999999987544 2 2233444577899999999999998877788765433
No 78
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=82.70 E-value=1.7 Score=31.59 Aligned_cols=14 Identities=36% Similarity=0.937 Sum_probs=11.1
Q ss_pred eeeEEcCCCCcccc
Q 015613 229 VYTVVCLDCGFSFC 242 (403)
Q Consensus 229 ~~~~~C~~C~~~~~ 242 (403)
++..+|.+|+..+.
T Consensus 3 ~Yey~C~~Cg~~fe 16 (52)
T TIGR02605 3 IYEYRCTACGHRFE 16 (52)
T ss_pred CEEEEeCCCCCEeE
Confidence 46779999998764
No 79
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=82.61 E-value=1.1 Score=47.54 Aligned_cols=79 Identities=15% Similarity=0.150 Sum_probs=54.7
Q ss_pred CCCCcHHHHHHHHHHHhhCCeEEEEccCcchhh-HHHHHHHHHhCCCeEEEEcCCCCCCCC---cccEEEECcHHHHHHH
Q 015613 316 GDNVPKDRADKAMEAAKECDAFLVLGSSLMTMS-AYRLVRAAHEAGSTIAIVNVGETRADD---LTTLKISARLGEILPR 391 (403)
Q Consensus 316 gE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p-~~~lv~~a~~~g~~liiIN~~~t~~d~---~~~l~I~~~~~evL~~ 391 (403)
+|.+|...-..-..++++||++|++|+-|.=.- +-.-++. ....++|.||..+..+.. ..++-|.+|++.++.+
T Consensus 259 ~d~hPl~v~~aRS~ALk~ADvvll~GarlnwiLhfG~~Pk~--~kd~KfIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~ 336 (571)
T KOG1185|consen 259 PDNHPLNVSSARSLALKKADVVLLAGARLNWILHFGLPPKW--SKDVKFIQVDINPEELGNNFVKPDVAIQGDIGLFVLQ 336 (571)
T ss_pred CCCCchhhhHHHHHHHhhCCEEEEecceeeEEEecCCCCcc--CCCceEEEEeCCHHHHhcccCCCCceeeecHHHHHHH
Confidence 556665433333467889999999999876411 1111112 347899999988765543 4678899999999999
Q ss_pred HHHhC
Q 015613 392 VLDVG 396 (403)
Q Consensus 392 L~~~~ 396 (403)
|.+.+
T Consensus 337 L~e~l 341 (571)
T KOG1185|consen 337 LVEEL 341 (571)
T ss_pred HHHHh
Confidence 98865
No 80
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=82.40 E-value=0.7 Score=49.49 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=44.7
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.+++||++|+||+.|............. ..++|-||.+...... ..++.| +|+..+|.+|++.+
T Consensus 265 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~--~~~~I~id~~~~~~~~~~~~~~~i-~D~~~~l~~l~~~l 334 (539)
T TIGR03393 265 AVKEAIEGADAVICVGVRFTDTITAGFTHQLT--PEQTIDVQPHAARVGNVWFTGIPM-NDAIETLVELCEHA 334 (539)
T ss_pred HHHHHHhhCCEEEEECCcccccccceeeccCC--cccEEEEcCCeEEECceEeCCcCH-HHHHHHHHHHhhhc
Confidence 35567789999999999886533211111111 2468888887655433 234556 89999999998755
No 81
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=82.12 E-value=2.7 Score=45.40 Aligned_cols=55 Identities=11% Similarity=0.210 Sum_probs=42.3
Q ss_pred HHHHhhCCeEEEEccCcch-h-hHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEE
Q 015613 328 MEAAKECDAFLVLGSSLMT-M-SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 382 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V-~-p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~ 382 (403)
.+.+..+|++|++|+.... . ...+.+..++++|+++|.|++..+.....+|..|.
T Consensus 154 ~~D~~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr~s~ta~~Ad~~l~ 210 (567)
T cd02765 154 ITDWVNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVYSTTAAKADQWVP 210 (567)
T ss_pred HhHHhcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCCCCcchhhcCEEec
Confidence 3456799999999997644 2 34555566778999999999999988777776644
No 82
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=81.41 E-value=2 Score=47.93 Aligned_cols=67 Identities=15% Similarity=0.295 Sum_probs=51.8
Q ss_pred HHHHhhCCeEEEEccCcch-hhH-HHHHHHHHh-CCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHH
Q 015613 328 MEAAKECDAFLVLGSSLMT-MSA-YRLVRAAHE-AGSTIAIVNVGETRADDLTTLKISARLGEILPRVLD 394 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V-~p~-~~lv~~a~~-~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~ 394 (403)
.+.+..+|++|+||+.-.- +|+ +..+..|++ +|.++|.+.+-.++..+.+|+.|+-+-+.=+..|..
T Consensus 415 i~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~R~~emaerAdlf~~pkpGtd~a~l~A 484 (978)
T COG3383 415 IEDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDPRKHEMAERADLFLHPKPGTDLAWLTA 484 (978)
T ss_pred HHHHhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEeccchhHHHHhhhcccCCCCCccHHHHHH
Confidence 4677899999999985433 553 455555666 899999999999999999999998887776555543
No 83
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=81.26 E-value=4.1 Score=43.85 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=44.6
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHH
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPR 391 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~ 391 (403)
+.+.+++||++|+||+.+.......+.. ....++|.|+.++...+. ..++.|.+|+.++|..
T Consensus 280 ~~~~l~~aD~vl~vG~~l~~~~~~~~~~---~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 343 (568)
T PRK07449 280 AAEELLQPDIVIQFGSPPTSKRLLQWLA---DCEPEYWVVDPGPGRLDPAHHATRRLTASVATWLEA 343 (568)
T ss_pred hhhhcCCCCEEEEeCCCCCchhHHHHHh---cCCCCEEEECCCCCcCCCCCCceEEEEEcHHHHHHh
Confidence 4466789999999999985433222211 123489999998877654 4568899999999886
No 84
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=80.11 E-value=3.7 Score=43.20 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=41.7
Q ss_pred HHHhhCCeEEEEccCcch-h--hHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEE
Q 015613 329 EAAKECDAFLVLGSSLMT-M--SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 382 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V-~--p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~ 382 (403)
..+.+||++|++|+.... . .....+..++++|+++|.|++..+.....+|..|.
T Consensus 156 ~d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr~s~ta~~Ad~~l~ 212 (477)
T cd02759 156 PDWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTWLAARADLWLP 212 (477)
T ss_pred hhhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCCCChhhHhhCeeec
Confidence 456799999999987654 3 33445556777899999999999988788887764
No 85
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=79.21 E-value=4.7 Score=42.63 Aligned_cols=54 Identities=20% Similarity=0.365 Sum_probs=40.9
Q ss_pred HHHhhCCeEEEEccCcch-hh-HHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEE
Q 015613 329 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 382 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V-~p-~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~ 382 (403)
..++++|++|++|+.... .| ....+..++++|+++|.|++..+.....+|..|.
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~ta~~Ad~~l~ 207 (512)
T cd02753 152 ADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTELARFADLHLQ 207 (512)
T ss_pred HHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccchHhhCeeeC
Confidence 456799999999987644 22 3344555678899999999999888777787764
No 86
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=79.18 E-value=7.4 Score=39.34 Aligned_cols=56 Identities=25% Similarity=0.335 Sum_probs=38.4
Q ss_pred HHHhhCCeEEEEccCcch-hh-HHHHHHHHH-hCCCeEEEEcCCCCCCCCcccEEEECcHH
Q 015613 329 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAH-EAGSTIAIVNVGETRADDLTTLKISARLG 386 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V-~p-~~~lv~~a~-~~g~~liiIN~~~t~~d~~~~l~I~~~~~ 386 (403)
..++.+|++|++|+.... .| ....++.+. ++|++++.|++..+.. .++..+.-+-+
T Consensus 144 ~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~--~ad~~~~~~pg 202 (386)
T cd02768 144 AEIEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL--IADLTYPVSPL 202 (386)
T ss_pred HHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc--ccceEEEcCCc
Confidence 456799999999987644 44 333344443 4599999999988877 56665544343
No 87
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=77.93 E-value=1.4 Score=29.99 Aligned_cols=12 Identities=33% Similarity=0.778 Sum_probs=9.4
Q ss_pred eEEcCCCCcccc
Q 015613 231 TVVCLDCGFSFC 242 (403)
Q Consensus 231 ~~~C~~C~~~~~ 242 (403)
...|+.|+..|.
T Consensus 2 ~~~CP~C~~~~~ 13 (38)
T TIGR02098 2 RIQCPNCKTSFR 13 (38)
T ss_pred EEECCCCCCEEE
Confidence 368999998764
No 88
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=77.47 E-value=1.1 Score=39.52 Aligned_cols=10 Identities=40% Similarity=0.903 Sum_probs=8.7
Q ss_pred EcCCCCcccc
Q 015613 233 VCLDCGFSFC 242 (403)
Q Consensus 233 ~C~~C~~~~~ 242 (403)
+|++|++.|+
T Consensus 3 ~Ct~Cg~~f~ 12 (131)
T PF09845_consen 3 QCTKCGRVFE 12 (131)
T ss_pred ccCcCCCCcC
Confidence 7999998874
No 89
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=77.04 E-value=5.8 Score=39.63 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=38.8
Q ss_pred HHHhhCCeEEEEccCcch-hh-HHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEE
Q 015613 329 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKI 381 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V-~p-~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I 381 (403)
..++.+|++|++|+.... .| ....+..++++|+++|.|++..+.....++..|
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t~~~ad~~i 206 (374)
T cd00368 152 ADIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETAAKADEWL 206 (374)
T ss_pred HHHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcchHhhCEee
Confidence 446799999999986644 33 334445566789999999999887766666654
No 90
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=76.88 E-value=3.5 Score=43.10 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=39.8
Q ss_pred HHhhCCeEEEEccCcchh---hHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEE
Q 015613 330 AAKECDAFLVLGSSLMTM---SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 382 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~---p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~ 382 (403)
.+.++|++|++|+..... +....+..++++|+++|.|++..+.....+|..|.
T Consensus 153 d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr~t~ta~~AD~~i~ 208 (454)
T cd02755 153 DFENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPRFSELASKADEWIP 208 (454)
T ss_pred chhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCCCChhhHhhCEecC
Confidence 457899999999875432 23444556677899999999999888777777643
No 91
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=76.32 E-value=3.6 Score=47.14 Aligned_cols=54 Identities=11% Similarity=0.123 Sum_probs=42.0
Q ss_pred HHHHhhCCeEEEEccCcch--hhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEE
Q 015613 328 MEAAKECDAFLVLGSSLMT--MSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKI 381 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V--~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I 381 (403)
...+..+|++|++|+.... .+....+..++++|+++|.|++..+.....+|+.|
T Consensus 219 ~~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~tA~~AD~wl 274 (912)
T TIGR03479 219 SDDWFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPSTIHADLWL 274 (912)
T ss_pred hhhhhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChhhhhCCeec
Confidence 3456789999999987544 34556666778899999999999988877777654
No 92
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=76.14 E-value=6.2 Score=43.67 Aligned_cols=56 Identities=23% Similarity=0.391 Sum_probs=41.5
Q ss_pred HHHhhCCeEEEEccCcch-hhH-HHHHHHHHhC-CCeEEEEcCCCCCCCCcccEEEECc
Q 015613 329 EAAKECDAFLVLGSSLMT-MSA-YRLVRAAHEA-GSTIAIVNVGETRADDLTTLKISAR 384 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V-~p~-~~lv~~a~~~-g~~liiIN~~~t~~d~~~~l~I~~~ 384 (403)
..++.+|++|++|+.... +|. ...+..++++ |+++|.|++..|+....+|+.|.=+
T Consensus 165 ~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~ir 223 (649)
T cd02752 165 NDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAAKADLYVPIR 223 (649)
T ss_pred HHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhHhcCEeeCcC
Confidence 456889999999987653 552 3444556555 9999999999998888888765433
No 93
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=76.08 E-value=7.1 Score=42.55 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=32.6
Q ss_pred HHHhhCCeEEEEccCcch-hh-HHHHHHHHHhCCCeEEEEcCCCC
Q 015613 329 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGET 371 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V-~p-~~~lv~~a~~~g~~liiIN~~~t 371 (403)
+.+..+|++|++|+...+ .| ....+..++++|+++|.||+-.+
T Consensus 159 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 159 EDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred HHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 466789999999986543 33 34445667889999999998765
No 94
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=75.99 E-value=5.9 Score=39.96 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=44.9
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCC-CCCCcccEEEECcHHHHHHHHHHhC
Q 015613 333 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 333 ~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t-~~d~~~~l~I~~~~~evL~~L~~~~ 396 (403)
..+|.|-+|.|-.+.=..-+ +.-..+|-||.++. ++-+.+|+-|-+|+-++||+|.+.+
T Consensus 252 ~P~lYiA~GISGaiQH~~Gm-----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~eilP~L~e~l 311 (313)
T PRK03363 252 KPELYLAVGISGQIQHMVGA-----NASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAAL 311 (313)
T ss_pred CccEEEEEccccHHHHHhhc-----ccCCEEEEEcCCCCCCchhhCCeeEeeeHHHHHHHHHHHh
Confidence 45788999988766532222 12345889999985 6778999999999999999998864
No 95
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=75.49 E-value=6.1 Score=39.88 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=44.6
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCC-CCCCcccEEEECcHHHHHHHHHHhC
Q 015613 333 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 333 ~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t-~~d~~~~l~I~~~~~evL~~L~~~~ 396 (403)
..+|.|.+|.|-.+.=..-+ +.-..+|-||.++. ++-+.+|+.|-+|+-++||+|.+.+
T Consensus 251 ~P~lYiA~GISGAiQH~aGm-----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~~vlP~L~e~l 310 (312)
T PRK11916 251 KSDLYLTLGISGQIQHMVGG-----NGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQL 310 (312)
T ss_pred CccEEEEeccccHHHHHhhc-----ccCCEEEEECCCCCCCchhhCCeeEeeeHHHHHHHHHHHh
Confidence 45788889988766432222 12335889999985 6778999999999999999998764
No 96
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=75.18 E-value=7.2 Score=40.53 Aligned_cols=13 Identities=38% Similarity=0.807 Sum_probs=10.7
Q ss_pred eeEEcCCCCcccc
Q 015613 230 YTVVCLDCGFSFC 242 (403)
Q Consensus 230 ~~~~C~~C~~~~~ 242 (403)
++++|..|++.|+
T Consensus 1 ~~l~C~~Cg~~~~ 13 (398)
T TIGR03844 1 YTLRCPGCGEVLP 13 (398)
T ss_pred CEEEeCCCCCccC
Confidence 4679999998886
No 97
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=75.04 E-value=4.9 Score=43.01 Aligned_cols=56 Identities=18% Similarity=0.339 Sum_probs=41.4
Q ss_pred HHHhhCCeEEEEccCcchh-h-------HHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECc
Q 015613 329 EAAKECDAFLVLGSSLMTM-S-------AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISAR 384 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V~-p-------~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~ 384 (403)
+.+.++|++|++|+..... | ....+..++++|+++|.|++..+.....+|..|.=+
T Consensus 152 ~D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDPr~t~ta~~AD~~l~ir 215 (539)
T cd02762 152 PDIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTETAKLADEHLFVR 215 (539)
T ss_pred hhhhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECCCCchhhHhcCEeeCcC
Confidence 3568899999999765442 2 223555677889999999999998877788765433
No 98
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=74.78 E-value=2.2 Score=29.15 Aligned_cols=13 Identities=15% Similarity=0.562 Sum_probs=10.2
Q ss_pred eEEcCCCCcccch
Q 015613 231 TVVCLDCGFSFCR 243 (403)
Q Consensus 231 ~~~C~~C~~~~~~ 243 (403)
..+|.+|+..|..
T Consensus 2 ~i~Cp~C~~~y~i 14 (36)
T PF13717_consen 2 IITCPNCQAKYEI 14 (36)
T ss_pred EEECCCCCCEEeC
Confidence 3689999988753
No 99
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=74.70 E-value=6.2 Score=42.36 Aligned_cols=54 Identities=24% Similarity=0.515 Sum_probs=40.0
Q ss_pred HHHhhCCeEEEEccCcch-hh-HHHHHHHHHhC--CCeEEEEcCCCCCCCCcccEEEE
Q 015613 329 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEA--GSTIAIVNVGETRADDLTTLKIS 382 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V-~p-~~~lv~~a~~~--g~~liiIN~~~t~~d~~~~l~I~ 382 (403)
+.+..+|++|++|+.... .| ....+..++++ |+++|.|++..+.....+|..|.
T Consensus 153 ~Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ta~~Ad~~l~ 210 (565)
T cd02754 153 DDIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHLP 210 (565)
T ss_pred HHHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHhCeeeC
Confidence 456799999999987644 22 33445556666 99999999999888777776653
No 100
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=74.18 E-value=6.1 Score=40.60 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=45.3
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCC-CCCCcccEEEECcHHHHHHHHHHhC
Q 015613 333 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 333 ~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t-~~d~~~~l~I~~~~~evL~~L~~~~ 396 (403)
..+|.|.+|.|-.+.=..-+ +.-..+|-||.++. ++-+.+|+-|-+|+-++||.|++.+
T Consensus 293 ~P~lYIA~GISGAiQH~~Gm-----~~s~~IVAIN~D~~APIF~~ADygIVgD~~evlP~Lie~l 352 (356)
T PLN00022 293 APELYIAVGISGAIQHLAGM-----KDSKVIVAINKDADAPIFQVADYGLVADLFEAVPELLEKL 352 (356)
T ss_pred CCcEEEEEecchHHHHHhhc-----ccCCEEEEECCCCCCCchhhcCeeEeeeHHHHHHHHHHHH
Confidence 45799999999766532222 12235889999985 6778999999999999999998864
No 101
>PF14353 CpXC: CpXC protein
Probab=74.18 E-value=1.1 Score=38.84 Aligned_cols=13 Identities=31% Similarity=0.881 Sum_probs=10.0
Q ss_pred EEcCCCCcccchh
Q 015613 232 VVCLDCGFSFCRD 244 (403)
Q Consensus 232 ~~C~~C~~~~~~~ 244 (403)
+.|+.|++.+..+
T Consensus 2 itCP~C~~~~~~~ 14 (128)
T PF14353_consen 2 ITCPHCGHEFEFE 14 (128)
T ss_pred cCCCCCCCeeEEE
Confidence 5899999876543
No 102
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=73.92 E-value=7.6 Score=45.16 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=42.2
Q ss_pred HHHhhCCeEEEEccCcch-hh-HHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECc
Q 015613 329 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISAR 384 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V-~p-~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~ 384 (403)
..+..+|++|++|+.... .| ..+.+..++++|+++|.||+..+.....+|+.|.=+
T Consensus 217 ~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~tA~~AD~~l~ir 274 (1009)
T TIGR01553 217 VDIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNRTATVADLYAPIR 274 (1009)
T ss_pred HHHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCchhHhhccEeCCC
Confidence 457889999999987543 44 345556677889999999999888877777665433
No 103
>PRK09939 putative oxidoreductase; Provisional
Probab=73.85 E-value=8.6 Score=43.35 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=32.8
Q ss_pred HHHHhhCCeEEEEccCcch-hh-HHHHHHHHHhCCCeEEEEcCCCC
Q 015613 328 MEAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGET 371 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V-~p-~~~lv~~a~~~g~~liiIN~~~t 371 (403)
.+.+..||++|++|+...+ .| ....+..++++|+++|.||+-.+
T Consensus 203 l~Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~ 248 (759)
T PRK09939 203 LEDFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQE 248 (759)
T ss_pred HHHHhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 3456899999999987544 44 34444567788999999999654
No 104
>PRK06260 threonine synthase; Validated
Probab=73.20 E-value=2.3 Score=43.93 Aligned_cols=13 Identities=31% Similarity=0.981 Sum_probs=11.0
Q ss_pred eeEEcCCCCcccc
Q 015613 230 YTVVCLDCGFSFC 242 (403)
Q Consensus 230 ~~~~C~~C~~~~~ 242 (403)
+.++|..|++.|+
T Consensus 2 ~~~~C~~cg~~~~ 14 (397)
T PRK06260 2 YWLKCIECGKEYD 14 (397)
T ss_pred CEEEECCCCCCCC
Confidence 5689999999875
No 105
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=72.61 E-value=2.2 Score=45.85 Aligned_cols=68 Identities=15% Similarity=0.001 Sum_probs=43.1
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.+++||++|+||+++..+...... ....+.++|.|+..+..... ..++.| +++.++|..|++..
T Consensus 261 ~~~~~l~~aDliL~iG~~l~~~~~~~~~--~~~~~~~~I~id~~~~~~~~~~~~~~~i-~d~~~~L~~l~~~~ 330 (535)
T TIGR03394 261 ELSRLVEESDGLLLLGVILSDTNFAVSQ--RKIDLRRTIHAFDRAVTLGYHVYADIPL-AGLVDALLALLCGL 330 (535)
T ss_pred HHHHHHHhCCEEEEECCccccccccccc--ccCCCCcEEEEeCCEEEECCeeECCccH-HHHHHHHHHhhhcc
Confidence 3456778999999999998654221100 01124578888877655433 345666 56888888877643
No 106
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=71.62 E-value=7.2 Score=42.74 Aligned_cols=53 Identities=15% Similarity=0.354 Sum_probs=39.5
Q ss_pred HHHhhCCeEEEEccCcch-hh-HHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEE
Q 015613 329 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKI 381 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V-~p-~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I 381 (403)
+.++++|++|++|+.... .| ....+..++++|+++|.|++..+.....++..|
T Consensus 151 ~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~ta~~ad~~i 205 (671)
T TIGR01591 151 SEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTETAKIADLHI 205 (671)
T ss_pred HHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChhhHhhCccc
Confidence 457789999999986543 33 345556677789999999998887766666554
No 107
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=71.28 E-value=9 Score=41.81 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=40.0
Q ss_pred HHHhhCCeEEEEccCcch-hh----HHHHHHHHHhCCCeEEEEcCCCCCCCC-cccEEEE
Q 015613 329 EAAKECDAFLVLGSSLMT-MS----AYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKIS 382 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V-~p----~~~lv~~a~~~g~~liiIN~~~t~~d~-~~~l~I~ 382 (403)
+.+..||++|++|+...+ .+ ....+..++++|+++|.|++..+.... .+|+.|.
T Consensus 162 ~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~tA~~~AD~~i~ 221 (617)
T cd02770 162 DDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDTAVTLADEWIP 221 (617)
T ss_pred HHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCccccccCCEEEC
Confidence 456789999999987544 22 245556677889999999999988764 6776543
No 108
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=70.40 E-value=3 Score=38.66 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=10.4
Q ss_pred CCCCCCCCcccC
Q 015613 299 PTCQKCNGVLKP 310 (403)
Q Consensus 299 P~Cp~Cgg~lrP 310 (403)
..||.||+.|..
T Consensus 137 F~Cp~Cg~~L~~ 148 (178)
T PRK06266 137 FRCPQCGEMLEE 148 (178)
T ss_pred CcCCCCCCCCee
Confidence 679999999876
No 109
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=70.17 E-value=1.8 Score=36.56 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=9.2
Q ss_pred EEcCCCCcccc
Q 015613 232 VVCLDCGFSFC 242 (403)
Q Consensus 232 ~~C~~C~~~~~ 242 (403)
.+|++||..|+
T Consensus 3 H~CtrCG~vf~ 13 (112)
T COG3364 3 HQCTRCGEVFD 13 (112)
T ss_pred ceecccccccc
Confidence 38999999875
No 110
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=70.06 E-value=3.6 Score=29.32 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=9.1
Q ss_pred eEEcCCCCcccc
Q 015613 231 TVVCLDCGFSFC 242 (403)
Q Consensus 231 ~~~C~~C~~~~~ 242 (403)
..+|.+||..+.
T Consensus 3 ~y~C~~CG~~~~ 14 (46)
T PRK00398 3 EYKCARCGREVE 14 (46)
T ss_pred EEECCCCCCEEE
Confidence 468999997653
No 111
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=70.03 E-value=3 Score=28.53 Aligned_cols=12 Identities=25% Similarity=0.744 Sum_probs=9.6
Q ss_pred eEEcCCCCcccc
Q 015613 231 TVVCLDCGFSFC 242 (403)
Q Consensus 231 ~~~C~~C~~~~~ 242 (403)
..+|++|+..|.
T Consensus 2 ~i~CP~C~~~f~ 13 (37)
T PF13719_consen 2 IITCPNCQTRFR 13 (37)
T ss_pred EEECCCCCceEE
Confidence 368999998874
No 112
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=69.83 E-value=12 Score=31.48 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=44.2
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEECc
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISAR 384 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~~ 384 (403)
.+.+-|++|++.-|-.+....+.++.++++|+++|.| +...++..+.+|+.|...
T Consensus 44 ~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~ 99 (128)
T cd05014 44 MVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLP 99 (128)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEECC
Confidence 4578899999999999999999999999999997666 445567777788777654
No 113
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=69.39 E-value=11 Score=41.93 Aligned_cols=55 Identities=11% Similarity=0.069 Sum_probs=41.0
Q ss_pred HHHhhCCeEEEEccCcch--hhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEEC
Q 015613 329 EAAKECDAFLVLGSSLMT--MSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISA 383 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V--~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~ 383 (403)
..+.+||++|++|+.... .|+..-+..++++|+++|.||+-.+.....+|..|.=
T Consensus 151 ~D~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDPr~t~ta~~AD~wl~i 207 (679)
T cd02763 151 PDLEHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNPVRTGYAAIADEWVPI 207 (679)
T ss_pred hHHHhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcCcCCcchHhhCeecCc
Confidence 467789999999985432 3455555567778999999999988877777766543
No 114
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=68.93 E-value=21 Score=37.66 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=51.7
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhC--CCeEEEEcCCCCCCCC-------cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEA--GSTIAIVNVGETRADD-------LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~--g~~liiIN~~~t~~d~-------~~~l~I~~~~~evL~~L~~~~ 396 (403)
...+...+.|++.+-.++.+...+.++++..++. ++++|+-....|..++ .+|..+.|..+.+|.+|++..
T Consensus 61 ~~~~~~~~~Dlv~is~~t~~~~~~~~ia~~iK~~~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GEgE~~l~~l~~g~ 140 (472)
T TIGR03471 61 DTLAIAKDYDLVVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFDYTIKEVAEGK 140 (472)
T ss_pred HHHHHhcCCCEEEEECCCcchHHHHHHHHHHHHhCCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCchHHHHHHHHcCC
Confidence 3444566789888777777777788888877765 5667777766665432 478999999999999998643
No 115
>PRK07591 threonine synthase; Validated
Probab=68.89 E-value=3.4 Score=43.13 Aligned_cols=15 Identities=20% Similarity=0.662 Sum_probs=11.8
Q ss_pred ceeeEEcCCCCcccc
Q 015613 228 TVYTVVCLDCGFSFC 242 (403)
Q Consensus 228 s~~~~~C~~C~~~~~ 242 (403)
.+..++|..|++.|+
T Consensus 15 ~~~~l~C~~Cg~~~~ 29 (421)
T PRK07591 15 PAVALKCRECGAEYP 29 (421)
T ss_pred ceeEEEeCCCCCcCC
Confidence 345689999998875
No 116
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=68.50 E-value=4.5 Score=36.65 Aligned_cols=15 Identities=13% Similarity=0.230 Sum_probs=11.1
Q ss_pred eeeEEcCCCCcccch
Q 015613 229 VYTVVCLDCGFSFCR 243 (403)
Q Consensus 229 ~~~~~C~~C~~~~~~ 243 (403)
-....|+.|+..|..
T Consensus 107 ~~~Y~Cp~c~~r~tf 121 (158)
T TIGR00373 107 NMFFICPNMCVRFTF 121 (158)
T ss_pred CCeEECCCCCcEeeH
Confidence 335689999988753
No 117
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=68.44 E-value=9.7 Score=42.72 Aligned_cols=51 Identities=10% Similarity=0.232 Sum_probs=38.7
Q ss_pred HhhCCeEEEEccCcch-h---------hHHHHHHHHHhCCCeEEEEcCCCCCCCCcc-cEEE
Q 015613 331 AKECDAFLVLGSSLMT-M---------SAYRLVRAAHEAGSTIAIVNVGETRADDLT-TLKI 381 (403)
Q Consensus 331 ~~~aDllLVVGTSL~V-~---------p~~~lv~~a~~~g~~liiIN~~~t~~d~~~-~l~I 381 (403)
+..+|++|++|+...+ . +....+..++++|+++|.|++-.|..-..+ |+.|
T Consensus 165 ~~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~~~G~klIvIDPr~t~tA~~aaD~~l 226 (770)
T TIGR00509 165 LENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLKAKGKRVISIDPVRTETAEFFGAEWI 226 (770)
T ss_pred HhcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHHHcCCEEEEEcCCCCcchhhccCeEe
Confidence 5789999999987543 1 345666677889999999999998876654 4543
No 118
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=68.38 E-value=11 Score=37.99 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=46.1
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCC-CCCCcccEEEECcHHHHHHHHHHhC
Q 015613 333 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 333 ~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t-~~d~~~~l~I~~~~~evL~~L~~~~ 396 (403)
..+|.|.+|.|-.+.=..-+ +.-..+|=||.++. +.-+.+|+-|-||+-+++|.|.+.+
T Consensus 251 ~P~LYIA~GISGAiQHlaGm-----~~Sk~IVAINkD~nAPIF~~ADyGiVgDl~~ivP~Lie~l 310 (313)
T COG2025 251 APKLYIALGISGAIQHLAGM-----KDSKVIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEAL 310 (313)
T ss_pred cccEEEEEecccHHHHHhhc-----ccCcEEEEEcCCCCCCccccCCeeeeeeHHHHHHHHHHHH
Confidence 56799999999876533332 22345888999975 6778999999999999999998865
No 119
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=68.12 E-value=7 Score=39.89 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=36.9
Q ss_pred HHhhCCeEEEEccCcch-hh-H-HHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEE
Q 015613 330 AAKECDAFLVLGSSLMT-MS-A-YRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 382 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V-~p-~-~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~ 382 (403)
.+.++|++|++|+.... .| . .++...++++|+++|.|++..+.....++..|.
T Consensus 108 D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t~~a~~ad~~i~ 163 (432)
T PF00384_consen 108 DIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRTPTAAKADEWIP 163 (432)
T ss_dssp GGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-HHGGGTSEEEE
T ss_pred eeeccceEEEcccCccccccccccccccccccCCcceEEEEeccchhhhhcccccc
Confidence 67899999999987655 22 2 466667788899999999998876666665543
No 120
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=67.84 E-value=17 Score=36.43 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=13.7
Q ss_pred hHHHHHHHHHhCCCeEEEEcCC
Q 015613 348 SAYRLVRAAHEAGSTIAIVNVG 369 (403)
Q Consensus 348 p~~~lv~~a~~~g~~liiIN~~ 369 (403)
-..++.+.|.+.+.|+|++.-+
T Consensus 156 Ki~ra~e~A~~~rlPlV~l~~S 177 (296)
T CHL00174 156 KITRLIEYATNESLPLIIVCAS 177 (296)
T ss_pred HHHHHHHHHHHcCCCEEEEECC
Confidence 3455556666677777776644
No 121
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=67.84 E-value=3.9 Score=35.23 Aligned_cols=20 Identities=25% Similarity=0.561 Sum_probs=14.3
Q ss_pred eeeccceeeEEcCCCCcccc
Q 015613 223 LELHGTVYTVVCLDCGFSFC 242 (403)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~ 242 (403)
+++.=--...+|.+|++.++
T Consensus 63 L~Ie~vp~~~~C~~Cg~~~~ 82 (117)
T PRK00564 63 LDIVDEKVELECKDCSHVFK 82 (117)
T ss_pred EEEEecCCEEEhhhCCCccc
Confidence 55555566789999997653
No 122
>PRK13937 phosphoheptose isomerase; Provisional
Probab=67.71 E-value=15 Score=33.76 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=45.0
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEECc
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISAR 384 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~~ 384 (403)
.+.+-|++|++-.|-.+.-....++.++++|+++|.| +...++..+.+|+.|.-.
T Consensus 103 ~~~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~~ 158 (188)
T PRK13937 103 LGRPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVP 158 (188)
T ss_pred hCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeC
Confidence 4568899999999988988899999999999998777 666777777788776543
No 123
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=67.25 E-value=17 Score=36.89 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=33.8
Q ss_pred HHHhhCCeEEEEccCcch-hh--HHHHHHHHHhCCCeEEEEcCCCCCCCCccc
Q 015613 329 EAAKECDAFLVLGSSLMT-MS--AYRLVRAAHEAGSTIAIVNVGETRADDLTT 378 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V-~p--~~~lv~~a~~~g~~liiIN~~~t~~d~~~~ 378 (403)
+.++.+|++|++|+.... .| ..++....+++|++++.|++..+..-..++
T Consensus 141 ~di~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~~t~~~~~ 193 (375)
T cd02773 141 AGIEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVDLTYDYDH 193 (375)
T ss_pred HHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCccccchhhcc
Confidence 456889999999997743 44 334433444568999999987765443333
No 124
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=67.22 E-value=17 Score=36.37 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCC
Q 015613 347 MSAYRLVRAAHEAGSTIAIVNVG 369 (403)
Q Consensus 347 ~p~~~lv~~a~~~g~~liiIN~~ 369 (403)
.-+.++++.|.+.+.|+|.+.-.
T Consensus 143 eKi~r~~e~A~~~~lPlV~l~ds 165 (292)
T PRK05654 143 EKIVRAVERAIEEKCPLVIFSAS 165 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcC
Confidence 44566777787888998887633
No 125
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=66.82 E-value=9.5 Score=42.81 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=39.6
Q ss_pred HHHHhhCCeEEEEccCcch-hh-----HHHHHHHHHhCCCeEEEEcCCCCCCC---CcccEEEE
Q 015613 328 MEAAKECDAFLVLGSSLMT-MS-----AYRLVRAAHEAGSTIAIVNVGETRAD---DLTTLKIS 382 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V-~p-----~~~lv~~a~~~g~~liiIN~~~t~~d---~~~~l~I~ 382 (403)
...+..||++|++|+.... .| +.++.+...++|+++|+|++-.|... ..+|+.|.
T Consensus 206 ~~D~~~ad~il~~GsN~a~~~~~~~~~~~~l~~a~~~~G~KlVVVDPr~t~ta~~~~~Ad~wlp 269 (735)
T cd02758 206 KPDFDNAEFALFIGTSPAQAGNPFKRQARRLAEARTEGNFKYVVVDPVLPNTTSAAGENIRWVP 269 (735)
T ss_pred CcCHhhCcEEEEeCCCHHHhCCCcchHHHHHHHHHHhCCCEEEEECCCCCccccccccCCEEEC
Confidence 3566789999999998654 33 34454444347999999999988776 67776643
No 126
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=66.58 E-value=15 Score=41.26 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=32.8
Q ss_pred HHHhhCCeEEEEccCcch-hh-HHHHHHHHHhCCCeEEEEcCCCCC
Q 015613 329 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETR 372 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V-~p-~~~lv~~a~~~g~~liiIN~~~t~ 372 (403)
+.+..+|++|++|+...+ .| ....+..++++|+++|.||+-.++
T Consensus 194 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~~ 239 (743)
T TIGR01701 194 EDFEHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRER 239 (743)
T ss_pred hHHHhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence 466789999999986543 34 344556678899999999986543
No 127
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=65.71 E-value=35 Score=28.95 Aligned_cols=65 Identities=12% Similarity=0.009 Sum_probs=41.2
Q ss_pred hhCCeEEEEccCcchhhHHHHHHHHHhCC--CeEEEEcCCCCC------CCCcccEEEECcHHHHHHHHHHhC
Q 015613 332 KECDAFLVLGSSLMTMSAYRLVRAAHEAG--STIAIVNVGETR------ADDLTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 332 ~~aDllLVVGTSL~V~p~~~lv~~a~~~g--~~liiIN~~~t~------~d~~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.|++.+=..+.....+.++++..++.+ +++++-....+. ....+|+.+.|+.+..+++|++.+
T Consensus 38 ~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l 110 (127)
T cd02068 38 LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGEETFLKLLEEL 110 (127)
T ss_pred cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcHHHHHHHHHHH
Confidence 56777655444444455566666666544 444444443332 234688999999999999999754
No 128
>PRK12496 hypothetical protein; Provisional
Probab=65.40 E-value=4.5 Score=36.97 Aligned_cols=11 Identities=27% Similarity=0.618 Sum_probs=9.2
Q ss_pred EEcCCCCcccc
Q 015613 232 VVCLDCGFSFC 242 (403)
Q Consensus 232 ~~C~~C~~~~~ 242 (403)
.+|..|++.|+
T Consensus 128 ~~C~gC~~~~~ 138 (164)
T PRK12496 128 KVCKGCKKKYP 138 (164)
T ss_pred EECCCCCcccc
Confidence 57999998875
No 129
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=65.06 E-value=38 Score=33.79 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHhCCCeEEEEc
Q 015613 347 MSAYRLVRAAHEAGSTIAIVN 367 (403)
Q Consensus 347 ~p~~~lv~~a~~~g~~liiIN 367 (403)
.-+.++++.|.+.+.|+|.+-
T Consensus 142 eKi~r~~e~A~~~~lPlV~l~ 162 (285)
T TIGR00515 142 EKFVRAIEKALEDNCPLIIFS 162 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEEE
Confidence 445677777888899987764
No 130
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=65.05 E-value=6.9 Score=26.35 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=9.6
Q ss_pred eEEcCCCCcccc
Q 015613 231 TVVCLDCGFSFC 242 (403)
Q Consensus 231 ~~~C~~C~~~~~ 242 (403)
.++|..||+.+.
T Consensus 2 ~~~C~~CG~i~~ 13 (34)
T cd00729 2 VWVCPVCGYIHE 13 (34)
T ss_pred eEECCCCCCEeE
Confidence 478999998764
No 131
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=64.79 E-value=15 Score=40.07 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=37.3
Q ss_pred HHHHhhCCeEEEEccCcch-hh-HHHHHHHHHhCC-CeEEEEcCCCCCCCCcccEEE
Q 015613 328 MEAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAG-STIAIVNVGETRADDLTTLKI 381 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V-~p-~~~lv~~a~~~g-~~liiIN~~~t~~d~~~~l~I 381 (403)
...+..+|++|++|+.... .| ....+..+.++| +++|.|++..+.....+|..+
T Consensus 357 ~~di~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta~~Ad~~l 413 (603)
T TIGR01973 357 LADIEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYPANTNL 413 (603)
T ss_pred HHHHHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccchhhhccce
Confidence 3466789999999987644 33 233334454444 899999998887777666554
No 132
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=64.67 E-value=11 Score=42.21 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=40.2
Q ss_pred HHhhCCeEEEEccCcch-hh--HHHHHHHHH-hCCCeEEEEcCCCCCCCCcccEEEEC
Q 015613 330 AAKECDAFLVLGSSLMT-MS--AYRLVRAAH-EAGSTIAIVNVGETRADDLTTLKISA 383 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V-~p--~~~lv~~a~-~~g~~liiIN~~~t~~d~~~~l~I~~ 383 (403)
.++++|++|++|+.... .| ..+.+..++ ++|+++|.|++..+.....+|+.|.=
T Consensus 193 D~~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta~~Ad~~l~i 250 (759)
T PRK15488 193 DLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVASKADEWHAI 250 (759)
T ss_pred CHhhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcchhhCCeeecc
Confidence 56799999999987644 33 334444555 78999999999998887777776543
No 133
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=64.53 E-value=19 Score=36.92 Aligned_cols=44 Identities=25% Similarity=0.373 Sum_probs=32.9
Q ss_pred HHHhhCCeEEEEccCcc-hhh-HHHHHHHHHhCCCeEEEEcCCCCC
Q 015613 329 EAAKECDAFLVLGSSLM-TMS-AYRLVRAAHEAGSTIAIVNVGETR 372 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~-V~p-~~~lv~~a~~~g~~liiIN~~~t~ 372 (403)
+.++++|++|++|+... ..| ....+..+.++|+++|.|++..+.
T Consensus 148 ~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~~ 193 (414)
T cd02772 148 AEISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADDD 193 (414)
T ss_pred HHHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccch
Confidence 46788999999999763 344 345556677889999999986553
No 134
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=64.23 E-value=16 Score=41.32 Aligned_cols=57 Identities=12% Similarity=0.042 Sum_probs=42.9
Q ss_pred HHHHhhCCeEEEEccCcchh--h-HHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECc
Q 015613 328 MEAAKECDAFLVLGSSLMTM--S-AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISAR 384 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V~--p-~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~ 384 (403)
...+..+|++|++|+..... | ..+.+..++++|+++|.|++-.+.....+|..|.-.
T Consensus 168 ~~D~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVDPr~t~ta~~AD~wlpir 227 (760)
T cd02760 168 AADTPLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPHLSVTGACSAEWVPIR 227 (760)
T ss_pred cchHhcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEcCCCCcchhhcCeEeCcC
Confidence 34667999999999987432 2 345556677789999999999998877788765433
No 135
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=63.56 E-value=13 Score=40.70 Aligned_cols=49 Identities=12% Similarity=0.206 Sum_probs=36.4
Q ss_pred HHhhCCeEEEEccCcch-----------hhHHHHHHHHHhCCCeEEEEcCCCCCCCCccc
Q 015613 330 AAKECDAFLVLGSSLMT-----------MSAYRLVRAAHEAGSTIAIVNVGETRADDLTT 378 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V-----------~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~ 378 (403)
.+..+|++|+.|+.... .+....+..++++|+++|.|++-.+..-..++
T Consensus 167 ~~~~a~~il~wG~Np~~t~~~~~~~~~~~~~~~~~~~ar~~GaklIvIDPr~t~tA~~ad 226 (609)
T cd02769 167 IAEHTELVVAFGADPLKNAQIAWGGIPDHQAYSYLKALKDRGIRFISISPLRDDTAAELG 226 (609)
T ss_pred HHhhCCeEEEECCChHHhCcccccccCCcchHHHHHHHHhCCCEEEEEcCCCCcchhhhc
Confidence 35799999999986443 12334555677899999999999888766554
No 136
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=62.90 E-value=3.6 Score=36.67 Aligned_cols=13 Identities=15% Similarity=0.409 Sum_probs=10.3
Q ss_pred eEEcCCCCcccch
Q 015613 231 TVVCLDCGFSFCR 243 (403)
Q Consensus 231 ~~~C~~C~~~~~~ 243 (403)
...|+.|+..|..
T Consensus 99 ~Y~Cp~C~~~y~~ 111 (147)
T smart00531 99 YYKCPNCQSKYTF 111 (147)
T ss_pred EEECcCCCCEeeH
Confidence 4589999998863
No 137
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=62.70 E-value=3.8 Score=46.75 Aligned_cols=20 Identities=25% Similarity=0.675 Sum_probs=14.5
Q ss_pred eeccceee-----EEcCCCCcccch
Q 015613 224 ELHGTVYT-----VVCLDCGFSFCR 243 (403)
Q Consensus 224 elHGs~~~-----~~C~~C~~~~~~ 243 (403)
-|-||++. .+|.+|+..|.|
T Consensus 1000 Dl~GNLRaFsrQ~fRC~kC~~kYRR 1024 (1095)
T TIGR00354 1000 DIIGNLRAFSRQEVRCTKCNTKYRR 1024 (1095)
T ss_pred HhhhhHhhhhccceeecccCCcccc
Confidence 34577653 699999998854
No 138
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=62.32 E-value=35 Score=33.99 Aligned_cols=16 Identities=31% Similarity=0.198 Sum_probs=10.3
Q ss_pred HhCCCeEEEEcCCCCC
Q 015613 357 HEAGSTIAIVNVGETR 372 (403)
Q Consensus 357 ~~~g~~liiIN~~~t~ 372 (403)
+++|-++|.|=.++|-
T Consensus 192 ~ea~lpyIsVLt~PTt 207 (294)
T COG0777 192 SEAGLPYISVLTDPTT 207 (294)
T ss_pred HhcCCceEEEecCCCc
Confidence 3457777777666663
No 139
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=61.86 E-value=16 Score=32.51 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=49.6
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC-----cccE---EEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD-----LTTL---KISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~-----~~~l---~I~~~~~evL~~L~~~~ 396 (403)
.+.+.+..||++|+=||++..-...+++..++ +++.++++-+..+-.++ -++. .+-.|.+.++..+.+.+
T Consensus 55 ~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~-~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~~v~d~~~~~~~i~~Gg 132 (147)
T PF04016_consen 55 DAEEILPWADVVIITGSTLVNGTIDDILELAR-NAREVILYGPSAPLHPEALFDYGVTYVGGSRVVDPEKVLRAISEGG 132 (147)
T ss_dssp GHHHHGGG-SEEEEECHHCCTTTHHHHHHHTT-TSSEEEEESCCGGS-GGGGCCTT-SEEEEEEES-HHHHHHHHCTTS
T ss_pred HHHHHHccCCEEEEEeeeeecCCHHHHHHhCc-cCCeEEEEecCchhhHHHHHhCCCCEEEEEEEeCHHHHHHHHHcCC
Confidence 45678899999999999999999999998876 57788888887655542 1222 24566788887665543
No 140
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=61.85 E-value=5.4 Score=34.11 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=10.5
Q ss_pred CCCCCCCCcccCc
Q 015613 299 PTCQKCNGVLKPD 311 (403)
Q Consensus 299 P~Cp~Cgg~lrP~ 311 (403)
..||+||....|.
T Consensus 27 ivCP~CG~~~~~~ 39 (108)
T PF09538_consen 27 IVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCCCccCcc
Confidence 3599999887776
No 141
>PRK06450 threonine synthase; Validated
Probab=61.71 E-value=5.1 Score=40.61 Aligned_cols=12 Identities=33% Similarity=0.700 Sum_probs=9.7
Q ss_pred eEEcCCCCcccc
Q 015613 231 TVVCLDCGFSFC 242 (403)
Q Consensus 231 ~~~C~~C~~~~~ 242 (403)
.++|..|++.|+
T Consensus 3 ~~~C~~Cg~~~~ 14 (338)
T PRK06450 3 KEVCMKCGKERE 14 (338)
T ss_pred eeEECCcCCcCC
Confidence 368999998874
No 142
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=61.54 E-value=7.7 Score=26.58 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=9.9
Q ss_pred EEcCCCCcccch
Q 015613 232 VVCLDCGFSFCR 243 (403)
Q Consensus 232 ~~C~~C~~~~~~ 243 (403)
..|.+|+..|..
T Consensus 2 r~C~~Cg~~Yh~ 13 (36)
T PF05191_consen 2 RICPKCGRIYHI 13 (36)
T ss_dssp EEETTTTEEEET
T ss_pred cCcCCCCCcccc
Confidence 589999998863
No 143
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=61.39 E-value=18 Score=41.02 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=36.8
Q ss_pred HHHHhhCCeEEEEccCcch-hhH--HHHHHHHHhCCCeEEEEcCCCCCC-CCcccEEE
Q 015613 328 MEAAKECDAFLVLGSSLMT-MSA--YRLVRAAHEAGSTIAIVNVGETRA-DDLTTLKI 381 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V-~p~--~~lv~~a~~~g~~liiIN~~~t~~-d~~~~l~I 381 (403)
.+.++++|++|++|+.... .|. .++...++++|+++|.|++-.+.. ...++..+
T Consensus 371 ~~Die~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~t~a~~Ad~~l 428 (797)
T PRK07860 371 YADLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATRGLEKMGGTLL 428 (797)
T ss_pred HHHHHhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCchhhhhhhhcee
Confidence 4567899999999997655 452 344444456899999999877753 33344443
No 144
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=60.93 E-value=29 Score=31.30 Aligned_cols=54 Identities=15% Similarity=0.195 Sum_probs=44.3
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEEC
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISA 383 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~ 383 (403)
.+.+-|++|++-.|-.+.-....++.++++|+++|.| |...+++.+.+|+.|.-
T Consensus 98 ~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~ 152 (177)
T cd05006 98 LGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHV 152 (177)
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEe
Confidence 4678899999988888888889999999999998777 66667777777877653
No 145
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=60.35 E-value=8.7 Score=25.52 Aligned_cols=11 Identities=36% Similarity=0.966 Sum_probs=9.1
Q ss_pred EEcCCCCcccc
Q 015613 232 VVCLDCGFSFC 242 (403)
Q Consensus 232 ~~C~~C~~~~~ 242 (403)
.+|..||+.|+
T Consensus 2 ~~C~~CGy~y~ 12 (33)
T cd00350 2 YVCPVCGYIYD 12 (33)
T ss_pred EECCCCCCEEC
Confidence 58999998874
No 146
>PRK05580 primosome assembly protein PriA; Validated
Probab=60.03 E-value=17 Score=40.40 Aligned_cols=15 Identities=33% Similarity=0.853 Sum_probs=11.6
Q ss_pred ccceeeEEcCCCCcc
Q 015613 226 HGTVYTVVCLDCGFS 240 (403)
Q Consensus 226 HGs~~~~~C~~C~~~ 240 (403)
.|-.....|..|++.
T Consensus 376 rGy~~~~~C~~Cg~~ 390 (679)
T PRK05580 376 RGYAPFLLCRDCGWV 390 (679)
T ss_pred CCCCCceEhhhCcCc
Confidence 577777888888865
No 147
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=59.95 E-value=8.1 Score=28.47 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=10.0
Q ss_pred EEcCCCCcccch
Q 015613 232 VVCLDCGFSFCR 243 (403)
Q Consensus 232 ~~C~~C~~~~~~ 243 (403)
.+|..|++.|+.
T Consensus 2 y~C~~CgyiYd~ 13 (50)
T cd00730 2 YECRICGYIYDP 13 (50)
T ss_pred cCCCCCCeEECC
Confidence 589999999863
No 148
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=59.74 E-value=7 Score=33.51 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=13.5
Q ss_pred eeeccceeeEEcCCCCcccc
Q 015613 223 LELHGTVYTVVCLDCGFSFC 242 (403)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~ 242 (403)
++++=--...+|.+|++.++
T Consensus 62 L~i~~~p~~~~C~~Cg~~~~ 81 (114)
T PRK03681 62 LHLEEQEAECWCETCQQYVT 81 (114)
T ss_pred EEEEeeCcEEEcccCCCeee
Confidence 44444445679999997654
No 149
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=58.97 E-value=46 Score=29.53 Aligned_cols=52 Identities=13% Similarity=0.244 Sum_probs=41.3
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEE
Q 015613 331 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKIS 382 (403)
Q Consensus 331 ~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~ 382 (403)
..+-|++|++-.|-.+.-....++.++++|+++|.| +...++..+.+|+.|.
T Consensus 77 ~~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~ 129 (154)
T TIGR00441 77 GQKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELR 129 (154)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEE
Confidence 467899999998888888889999999999997777 4455666667776654
No 150
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=58.53 E-value=7 Score=34.38 Aligned_cols=14 Identities=7% Similarity=0.116 Sum_probs=10.5
Q ss_pred CCCCCCCCCcccCc
Q 015613 298 IPTCQKCNGVLKPD 311 (403)
Q Consensus 298 iP~Cp~Cgg~lrP~ 311 (403)
...||+||....|.
T Consensus 26 p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 26 PAVSPYTGEQFPPE 39 (129)
T ss_pred CccCCCcCCccCcc
Confidence 46799999876554
No 151
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=58.44 E-value=17 Score=32.77 Aligned_cols=52 Identities=23% Similarity=0.306 Sum_probs=40.1
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEE
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKI 381 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I 381 (403)
.+.+-|++|++.-|-.+....+.++.++++|+++|.| +...+++...+|+.+
T Consensus 69 ~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l 121 (179)
T TIGR03127 69 SIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVV 121 (179)
T ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEE
Confidence 3567899999988888888889999999999998777 555566555555554
No 152
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=58.23 E-value=22 Score=30.11 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=44.4
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEECcHH
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISARLG 386 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~~~~ 386 (403)
.+.+-|++|++-.|-.+.-..+.++.++++|+++|.| |...++..+.+|+.|.-.++
T Consensus 44 ~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 44 RLTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred cCCCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEEEccCC
Confidence 4567799999988888888888888999999996655 55566677778887766665
No 153
>PRK13938 phosphoheptose isomerase; Provisional
Probab=58.14 E-value=33 Score=32.13 Aligned_cols=54 Identities=20% Similarity=0.324 Sum_probs=41.9
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEE
Q 015613 329 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKIS 382 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~ 382 (403)
..+.+-|++|++-.|-.+.-....++.++++|+++|.| +...++..+.+|+.|.
T Consensus 109 ~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~ 163 (196)
T PRK13938 109 GSARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLIN 163 (196)
T ss_pred hcCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEE
Confidence 45568899999988888888889999999999997766 4445566666776654
No 154
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.02 E-value=21 Score=38.32 Aligned_cols=9 Identities=33% Similarity=0.903 Sum_probs=7.1
Q ss_pred CCCCCCCCC
Q 015613 298 IPTCQKCNG 306 (403)
Q Consensus 298 iP~Cp~Cgg 306 (403)
...||+||+
T Consensus 253 ~~~Cp~C~s 261 (505)
T TIGR00595 253 PKTCPQCGS 261 (505)
T ss_pred CCCCCCCCC
Confidence 347999987
No 155
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=58.00 E-value=5.2 Score=24.66 Aligned_cols=8 Identities=25% Similarity=0.787 Sum_probs=4.0
Q ss_pred CCCCCCCc
Q 015613 300 TCQKCNGV 307 (403)
Q Consensus 300 ~Cp~Cgg~ 307 (403)
.|+.||..
T Consensus 15 fC~~CG~~ 22 (23)
T PF13240_consen 15 FCPNCGTP 22 (23)
T ss_pred chhhhCCc
Confidence 35555543
No 156
>PRK14873 primosome assembly protein PriA; Provisional
Probab=57.86 E-value=31 Score=38.45 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhCCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCCCc
Q 015613 189 PAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGF 239 (403)
Q Consensus 189 ~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~ 239 (403)
....+|++-.++| .-++=-| |-|+.+ +.|+---...+|..|+-
T Consensus 357 ~l~~~i~~~L~~g--qvll~ln------RrGyap~l~C~~Cg~~~~C~~C~~ 400 (665)
T PRK14873 357 LAFRAARDALEHG--PVLVQVP------RRGYVPSLACARCRTPARCRHCTG 400 (665)
T ss_pred HHHHHHHHHHhcC--cEEEEec------CCCCCCeeEhhhCcCeeECCCCCC
Confidence 4455555544555 3344434 445555 66776667777777764
No 157
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=57.82 E-value=8 Score=33.11 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=14.3
Q ss_pred eeeccceeeEEcCCCCcccc
Q 015613 223 LELHGTVYTVVCLDCGFSFC 242 (403)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~ 242 (403)
++++=--...+|.+|++.+.
T Consensus 62 L~I~~vp~~~~C~~Cg~~~~ 81 (113)
T PRK12380 62 LHIVYKPAQAWCWDCSQVVE 81 (113)
T ss_pred EEEEeeCcEEEcccCCCEEe
Confidence 55555556779999997664
No 158
>PRK04023 DNA polymerase II large subunit; Validated
Probab=57.78 E-value=5.1 Score=46.02 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=19.0
Q ss_pred CCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhC
Q 015613 299 PTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKEC 334 (403)
Q Consensus 299 P~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~a 334 (403)
-+|++|||.+-+.|- +.--...++-+....++-
T Consensus 1054 G~C~kCGg~lilTVh---~GsV~KYl~~s~~la~~Y 1086 (1121)
T PRK04023 1054 GKCPKCGGNLILTVH---KGSVEKYLEVSKKLAEEY 1086 (1121)
T ss_pred CcCccCCCeEEEEEe---cchHHHHHHHHHHHHHHc
Confidence 469999998877764 222222344444444443
No 159
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=57.46 E-value=21 Score=38.31 Aligned_cols=54 Identities=6% Similarity=0.070 Sum_probs=38.9
Q ss_pred HHhhCCeEEEEccCcch--hh--HHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEEC
Q 015613 330 AAKECDAFLVLGSSLMT--MS--AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISA 383 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V--~p--~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~ 383 (403)
.+..+|++|++|+.... ++ ...-+..++++|+++|.|++..+.....+|..|.=
T Consensus 159 D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr~s~ta~~AD~~l~i 216 (523)
T cd02757 159 DYANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPRLSNTAAKADEWLPI 216 (523)
T ss_pred chhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCCCChhhHhcCEeeCC
Confidence 46799999999976533 22 22334445678999999999988877777776543
No 160
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=57.42 E-value=28 Score=37.90 Aligned_cols=50 Identities=18% Similarity=0.313 Sum_probs=37.5
Q ss_pred hCCeEEEEccCcch-hh---------HHHHHHHHHhCCCeEEEEcCCCCCCCC-cccEEEE
Q 015613 333 ECDAFLVLGSSLMT-MS---------AYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKIS 382 (403)
Q Consensus 333 ~aDllLVVGTSL~V-~p---------~~~lv~~a~~~g~~liiIN~~~t~~d~-~~~l~I~ 382 (403)
.+|++|++|+.... .| ....+..++++|+++|.|++..+.... .+|+.|.
T Consensus 169 ~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr~s~ta~~~AD~~l~ 229 (609)
T cd02751 169 HSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPRYTDTAAVLAAEWIP 229 (609)
T ss_pred cCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCCCCccccccCCEEEC
Confidence 59999999986543 33 224556677889999999999888775 5777654
No 161
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=57.41 E-value=31 Score=36.77 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=45.0
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHhC--CCeEEEEcCCCCCCC-------CcccEEEECcHHHHHHHHHHh
Q 015613 333 ECDAFLVLGSSLMTMSAYRLVRAAHEA--GSTIAIVNVGETRAD-------DLTTLKISARLGEILPRVLDV 395 (403)
Q Consensus 333 ~aDllLVVGTSL~V~p~~~lv~~a~~~--g~~liiIN~~~t~~d-------~~~~l~I~~~~~evL~~L~~~ 395 (403)
+.|+|.+-.++...+.+.++++.+++. ++++|+=...+|..+ ..+|..+.|+.++++.+|++.
T Consensus 63 ~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~ 134 (497)
T TIGR02026 63 CPDLVLITAITPAIYIACETLKFARERLPNAIIVLGGIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKLIAA 134 (497)
T ss_pred CcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEcCCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHHHHH
Confidence 688877755555556667777776654 677766666666432 247899999999999999874
No 162
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=57.05 E-value=8.9 Score=28.42 Aligned_cols=20 Identities=15% Similarity=0.441 Sum_probs=14.1
Q ss_pred eeeccceeeEEcCCCCcccchhhH
Q 015613 223 LELHGTVYTVVCLDCGFSFCRDLF 246 (403)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~~~~~ 246 (403)
..++|. .|..|+-..+.+.+
T Consensus 18 a~v~~~----~C~gC~~~l~~~~~ 37 (56)
T PF02591_consen 18 ARVEGG----TCSGCHMELPPQEL 37 (56)
T ss_pred EEeeCC----ccCCCCEEcCHHHH
Confidence 555554 89999987765544
No 163
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=56.79 E-value=5.4 Score=46.84 Aligned_cols=20 Identities=35% Similarity=0.831 Sum_probs=14.8
Q ss_pred eeccceee-----EEcCCCCcccch
Q 015613 224 ELHGTVYT-----VVCLDCGFSFCR 243 (403)
Q Consensus 224 elHGs~~~-----~~C~~C~~~~~~ 243 (403)
-|-||++. .+|.+|+..|.|
T Consensus 1241 Dl~GNLraFsrQ~~RC~kC~~kyRR 1265 (1337)
T PRK14714 1241 DLIGNLRAFSRQEFRCLKCGTKYRR 1265 (1337)
T ss_pred hhhhhhhhhhccceeecccCccccc
Confidence 35577764 599999998854
No 164
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=56.69 E-value=22 Score=43.59 Aligned_cols=63 Identities=14% Similarity=0.232 Sum_probs=44.4
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHH
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLD 394 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~ 394 (403)
.+.++|+||+||+.+............. ...+|.|+.++...+. ..++.|.+|+..+|..|++
T Consensus 595 ~~~~aDlVl~iG~rl~s~~~t~~~~~~~--~~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~ 659 (1655)
T PLN02980 595 NWIQFDVVIQIGSRITSKRVSQMLEKCF--PFSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLK 659 (1655)
T ss_pred ccCCCCEEEEeCCccccHHHHHHHHhCC--CCeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhh
Confidence 3568999999999986332222222111 2358999998887764 4568899999999988865
No 165
>COG1773 Rubredoxin [Energy production and conversion]
Probab=56.59 E-value=13 Score=28.11 Aligned_cols=14 Identities=21% Similarity=0.543 Sum_probs=11.6
Q ss_pred eeEEcCCCCcccch
Q 015613 230 YTVVCLDCGFSFCR 243 (403)
Q Consensus 230 ~~~~C~~C~~~~~~ 243 (403)
.+.+|..|+..|+.
T Consensus 2 ~~~~C~~CG~vYd~ 15 (55)
T COG1773 2 KRWRCSVCGYVYDP 15 (55)
T ss_pred CceEecCCceEecc
Confidence 46899999999864
No 166
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=56.54 E-value=24 Score=29.53 Aligned_cols=56 Identities=18% Similarity=0.143 Sum_probs=42.6
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEECcH
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISARL 385 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~~~ 385 (403)
.+.+-|++|++-.|-...-..+.++.++++|+++|.| |...++....+|+.|.-..
T Consensus 43 ~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~ 99 (126)
T cd05008 43 LLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLAREADYVLYLRA 99 (126)
T ss_pred CCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEecC
Confidence 3678899999988888888888999999999997755 5555666666777665444
No 167
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=56.38 E-value=7 Score=38.00 Aligned_cols=12 Identities=33% Similarity=0.766 Sum_probs=10.2
Q ss_pred CCCCCCCCCCcc
Q 015613 297 HIPTCQKCNGVL 308 (403)
Q Consensus 297 ~iP~Cp~Cgg~l 308 (403)
.++.||.||..|
T Consensus 220 ~iv~CP~CgRIL 231 (239)
T COG1579 220 EIVFCPYCGRIL 231 (239)
T ss_pred CCccCCccchHH
Confidence 589999999865
No 168
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=55.94 E-value=9.9 Score=27.64 Aligned_cols=13 Identities=23% Similarity=0.692 Sum_probs=10.8
Q ss_pred eEEcCCCCcccch
Q 015613 231 TVVCLDCGFSFCR 243 (403)
Q Consensus 231 ~~~C~~C~~~~~~ 243 (403)
+.+|..|+..|+.
T Consensus 1 ky~C~~CgyvYd~ 13 (47)
T PF00301_consen 1 KYQCPVCGYVYDP 13 (47)
T ss_dssp EEEETTTSBEEET
T ss_pred CcCCCCCCEEEcC
Confidence 4689999999874
No 169
>PRK04940 hypothetical protein; Provisional
Probab=55.59 E-value=34 Score=31.83 Aligned_cols=62 Identities=21% Similarity=0.207 Sum_probs=40.7
Q ss_pred cCcEEec--CCCCcHHHHHHHHHHHhh----C--CeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCC
Q 015613 309 KPDVVFF--GDNVPKDRADKAMEAAKE----C--DAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRA 373 (403)
Q Consensus 309 rP~Vv~F--gE~~p~~~~~~a~~~~~~----a--DllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~ 373 (403)
.|++.+. ....|.+.++...+.+.+ . +=+++|||||--+-+..|... .|.+-|+||+.-.+.
T Consensus 26 ~p~~~~~~l~~~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGGyyA~~La~~---~g~~aVLiNPAv~P~ 95 (180)
T PRK04940 26 DPDVRLISYSTLHPKHDMQHLLKEVDKMLQLSDDERPLICGVGLGGYWAERIGFL---CGIRQVIFNPNLFPE 95 (180)
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEeChHHHHHHHHHHH---HCCCEEEECCCCChH
Confidence 6777653 323455555544444431 1 347889999988888777544 488999999886653
No 170
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=55.20 E-value=42 Score=27.89 Aligned_cols=56 Identities=13% Similarity=0.149 Sum_probs=41.8
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEECcH
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISARL 385 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~~~ 385 (403)
.+.+-|++|++-.+-......++++.++++|++++.| +...+...+.++..|.-..
T Consensus 57 ~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~~~ 113 (139)
T cd05013 57 NLTPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLVSS 113 (139)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEEEcCC
Confidence 4567889999988888887888889999999998666 4445566666777665443
No 171
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=55.09 E-value=26 Score=36.04 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=31.3
Q ss_pred HHHHHhhCCeEEEEccCcch-hhH--HHHHHHHHhCCCeEEEEcCCC
Q 015613 327 AMEAAKECDAFLVLGSSLMT-MSA--YRLVRAAHEAGSTIAIVNVGE 370 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V-~p~--~~lv~~a~~~g~~liiIN~~~ 370 (403)
..+.++++|++|+||+.+.. .|. .++-...++.|++++.|++..
T Consensus 142 sl~die~ad~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~ 188 (366)
T cd02774 142 SLKNLDKSDLCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKF 188 (366)
T ss_pred CHHHHhhCCEEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 35578899999999998776 443 333333345578999998766
No 172
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=54.86 E-value=24 Score=39.72 Aligned_cols=54 Identities=9% Similarity=0.175 Sum_probs=38.7
Q ss_pred HHHhhCCeEEEEccCcch-hh----H-HHHHHHHHhCCCeEEEEcCCCCCCC-CcccEEEE
Q 015613 329 EAAKECDAFLVLGSSLMT-MS----A-YRLVRAAHEAGSTIAIVNVGETRAD-DLTTLKIS 382 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V-~p----~-~~lv~~a~~~g~~liiIN~~~t~~d-~~~~l~I~ 382 (403)
..+..+|++|++|+.... .+ . ..+.+.++++|+++|.|++-.+..- ..+|..|.
T Consensus 210 ~D~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t~taa~~Ad~~l~ 270 (797)
T TIGR02166 210 DDIENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYTDTVAGREDEWIP 270 (797)
T ss_pred HHHHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCCccchhcCCEEEC
Confidence 456789999999997654 23 2 3455555568999999999988764 46666543
No 173
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.77 E-value=6.1 Score=31.72 Aligned_cols=21 Identities=38% Similarity=0.847 Sum_probs=15.0
Q ss_pred CCCCCCCCCccc-----CcEEecCCC
Q 015613 298 IPTCQKCNGVLK-----PDVVFFGDN 318 (403)
Q Consensus 298 iP~Cp~Cgg~lr-----P~Vv~FgE~ 318 (403)
.-.||.||+.|| +.|+|=|..
T Consensus 33 lt~ce~c~a~~kk~l~~vgi~fKGSG 58 (82)
T COG2331 33 LTTCEECGARLKKLLNAVGIVFKGSG 58 (82)
T ss_pred cccChhhChHHHHhhccceEEEecce
Confidence 457999999654 677765544
No 174
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=54.21 E-value=2.6 Score=42.64 Aligned_cols=18 Identities=17% Similarity=0.325 Sum_probs=14.2
Q ss_pred eccceeeEEcCCCCcccc
Q 015613 225 LHGTVYTVVCLDCGFSFC 242 (403)
Q Consensus 225 lHGs~~~~~C~~C~~~~~ 242 (403)
--|-++.--|..|...|.
T Consensus 240 ~LGKY~~TAC~rC~t~y~ 257 (403)
T COG1379 240 RLGKYHLTACSRCYTRYS 257 (403)
T ss_pred cccchhHHHHHHhhhccC
Confidence 347788889999998775
No 175
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=54.02 E-value=11 Score=26.92 Aligned_cols=10 Identities=20% Similarity=0.707 Sum_probs=8.0
Q ss_pred CCCCCCCCCc
Q 015613 298 IPTCQKCNGV 307 (403)
Q Consensus 298 iP~Cp~Cgg~ 307 (403)
.-+||.||..
T Consensus 19 ~irC~~CG~r 28 (44)
T smart00659 19 VVRCRECGYR 28 (44)
T ss_pred ceECCCCCce
Confidence 4679999983
No 176
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=52.94 E-value=9 Score=41.14 Aligned_cols=85 Identities=13% Similarity=0.150 Sum_probs=52.9
Q ss_pred ccCcEEecCCCCcHH--------HHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccE
Q 015613 308 LKPDVVFFGDNVPKD--------RADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTL 379 (403)
Q Consensus 308 lrP~Vv~FgE~~p~~--------~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l 379 (403)
|--+--+|+|..|.. .-....+.++.||++|.+|+-|.-+.-..+...-. -..+|.++.......+..--
T Consensus 243 ~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~Ft~~~~--~~~~i~~~~~~v~I~~~~f~ 320 (557)
T COG3961 243 LPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGFTYQYK--PANIIEIHPDSVKIKDAVFT 320 (557)
T ss_pred eecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeeccccceeeecC--cccEEEeccCeeEecccccC
Confidence 333445678887763 23467788999999999998776655444433222 35678888776544332111
Q ss_pred EEECcHHHHHHHHHHhC
Q 015613 380 KISARLGEILPRVLDVG 396 (403)
Q Consensus 380 ~I~~~~~evL~~L~~~~ 396 (403)
.| ...++|++|++++
T Consensus 321 ~l--~m~~~L~~L~~~i 335 (557)
T COG3961 321 NL--SMKDALQELAKKI 335 (557)
T ss_pred Ce--eHHHHHHHHHHHh
Confidence 12 2778888887654
No 177
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=52.76 E-value=34 Score=38.70 Aligned_cols=57 Identities=11% Similarity=0.099 Sum_probs=39.2
Q ss_pred HHHHhhCCeEEEEccCcch-hh----HHHHHHHHH-hCCCeEEEEcCCCCCCC-CcccEEEECc
Q 015613 328 MEAAKECDAFLVLGSSLMT-MS----AYRLVRAAH-EAGSTIAIVNVGETRAD-DLTTLKISAR 384 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V-~p----~~~lv~~a~-~~g~~liiIN~~~t~~d-~~~~l~I~~~ 384 (403)
...+..+|++|++|+.... .+ ....+..++ ++|+++|.|++-.+... ..+|..|.=+
T Consensus 226 ~~D~~~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDPr~t~taa~~AD~~l~ir 289 (814)
T PRK14990 226 PSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIR 289 (814)
T ss_pred HHHHhhCCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECCCCCCcccccCCeEECCC
Confidence 4466789999999987654 22 233343444 57999999999988875 4677665433
No 178
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=52.73 E-value=36 Score=29.58 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=30.4
Q ss_pred HHHHHH--HhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE
Q 015613 325 DKAMEA--AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV 366 (403)
Q Consensus 325 ~~a~~~--~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI 366 (403)
+..... ++.-|+||++-+|-.....-..+.+|+++|.++|-|
T Consensus 93 ~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 93 RQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp HHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 334444 678999999999998888889999999999998754
No 179
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=52.71 E-value=48 Score=30.70 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=41.8
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEEC
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISA 383 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~ 383 (403)
..++-|++|++-.|-.+.-....+..++++|+++|.| +....++...+|+.|.-
T Consensus 108 ~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~ 162 (192)
T PRK00414 108 VGREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRV 162 (192)
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEe
Confidence 3467899999998988888889999999999997766 44456666667766543
No 180
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=51.57 E-value=35 Score=34.15 Aligned_cols=72 Identities=24% Similarity=0.391 Sum_probs=45.8
Q ss_pred HHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCC----CCCCcccEEEECcHH-------HHHHHH
Q 015613 324 ADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET----RADDLTTLKISARLG-------EILPRV 392 (403)
Q Consensus 324 ~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t----~~d~~~~l~I~~~~~-------evL~~L 392 (403)
.+...+...+||++||||+.-.. .-.+|.+-+.+.|.+-++|+...- -+.....+.|.+.++ +|+..|
T Consensus 203 Q~Avk~la~~~Dl~iVVG~~nSS-Ns~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~Vi~~l 281 (294)
T COG0761 203 QDAVKELAPEVDLVIVVGSKNSS-NSNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEVIAKL 281 (294)
T ss_pred HHHHHHHhhcCCEEEEECCCCCc-cHHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHHHHHH
Confidence 34455667799999999974432 236888888888999889974432 123333455655543 455555
Q ss_pred HHhC
Q 015613 393 LDVG 396 (403)
Q Consensus 393 ~~~~ 396 (403)
.+.+
T Consensus 282 ~~~~ 285 (294)
T COG0761 282 RELG 285 (294)
T ss_pred HHhc
Confidence 5544
No 181
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=51.44 E-value=45 Score=37.54 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=34.1
Q ss_pred HHHHhhCCeEEEEccCcch-hh-HHHHHHHHHhCCCeEEEEcCCCCCC
Q 015613 328 MEAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETRA 373 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V-~p-~~~lv~~a~~~g~~liiIN~~~t~~ 373 (403)
.+.+.++|++|++|+.... .| ....+..++++|+++|.|++..+..
T Consensus 365 ~~Di~~ad~Il~~G~N~~~~~p~~~~~i~~a~~~G~klividpr~t~~ 412 (776)
T PRK09129 365 IAELSNLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVDDDF 412 (776)
T ss_pred HHHHHhCCEEEEEecCcchhcHHHHHHHHHHHHCCCeEEEecCCcccc
Confidence 4567789999999987543 44 3445556778899999999877643
No 182
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=51.16 E-value=28 Score=39.46 Aligned_cols=54 Identities=20% Similarity=0.291 Sum_probs=37.3
Q ss_pred HHHhhCCeEEEEccCcch-hh--HHHHHHHH-HhCCCeEEEEcCCCCCCCCcccEEEE
Q 015613 329 EAAKECDAFLVLGSSLMT-MS--AYRLVRAA-HEAGSTIAIVNVGETRADDLTTLKIS 382 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V-~p--~~~lv~~a-~~~g~~liiIN~~~t~~d~~~~l~I~ 382 (403)
+.+..+|++|++|+.... .| +.++.... +++|+++|.|++-.+.....+|+.|.
T Consensus 202 ~Di~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDPr~t~ta~~ad~~l~ 259 (830)
T PRK13532 202 DDIEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLSTFEHRSFELADNGII 259 (830)
T ss_pred HHHHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECCCCCchhHhcCeeec
Confidence 456899999999987543 33 23443322 24799999999988877666666543
No 183
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=51.05 E-value=26 Score=36.22 Aligned_cols=90 Identities=20% Similarity=0.280 Sum_probs=47.4
Q ss_pred CCCCCCCCccc-CcEEecCCCCcHHHHHHHHHHHh-------------------hCCe-EEEE-----c--cCcchhhHH
Q 015613 299 PTCQKCNGVLK-PDVVFFGDNVPKDRADKAMEAAK-------------------ECDA-FLVL-----G--SSLMTMSAY 350 (403)
Q Consensus 299 P~Cp~Cgg~lr-P~Vv~FgE~~p~~~~~~a~~~~~-------------------~aDl-lLVV-----G--TSL~V~p~~ 350 (403)
.+||+||+.+. -+=+|-|.-.+.++.++..+..+ +.+. .+.. + .++++.|..
T Consensus 258 ~~c~~Cg~~~~~~GPlW~GpL~d~~f~e~~l~~~~~~~l~~~~~~~klL~~i~~E~~~~p~fydl~~ias~l~~s~p~~~ 337 (380)
T COG1867 258 EKCPHCGGKVHLAGPLWLGPLHDEEFIEEMLEIAEGLELGTKKRALKLLKLIKKELDISPLFYDLHRIASKLGLSAPPLE 337 (380)
T ss_pred ccCCcccccceeccCcccCcccCHHHHHHHHHHhhccccccHHHHHHHHHHHHhhcCCCceEEEHHHHHHHhCCCCCCHH
Confidence 56999998544 34456677666666555444332 2232 1111 1 233336667
Q ss_pred HHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHH
Q 015613 351 RLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLD 394 (403)
Q Consensus 351 ~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~ 394 (403)
+++...++.|-.-..---.++ .++=++..++|...|.+
T Consensus 338 ~vv~~L~~~G~~asrTHf~p~------giKTda~~~ev~~vl~~ 375 (380)
T COG1867 338 EVVEALRSAGYEASRTHFSPT------GIKTDAPYEEVEKVLKS 375 (380)
T ss_pred HHHHHHHhcCceeeeeccCCc------ccccCCCHHHHHHHHHH
Confidence 777666655544433333333 24555666776665544
No 184
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=50.36 E-value=61 Score=36.59 Aligned_cols=17 Identities=18% Similarity=0.560 Sum_probs=11.2
Q ss_pred CCCCCCCCcccCcEEecCCC
Q 015613 299 PTCQKCNGVLKPDVVFFGDN 318 (403)
Q Consensus 299 P~Cp~Cgg~lrP~Vv~FgE~ 318 (403)
-.||+||+. +++.+|-.
T Consensus 476 ~~Cp~Cgs~---~L~~~G~G 492 (730)
T COG1198 476 QSCPECGSE---HLRAVGPG 492 (730)
T ss_pred CCCCCCCCC---eeEEeccc
Confidence 369999986 44444443
No 185
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=50.34 E-value=9.9 Score=44.24 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=9.8
Q ss_pred CCCCCCCCcccCc
Q 015613 299 PTCQKCNGVLKPD 311 (403)
Q Consensus 299 P~Cp~Cgg~lrP~ 311 (403)
-.||.|||.+.+-
T Consensus 839 ~~~~~~~~~~~~~ 851 (1006)
T PRK12775 839 GMCPACGGKLQAL 851 (1006)
T ss_pred CcCcccccchhhh
Confidence 3799999976543
No 186
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=49.72 E-value=56 Score=37.35 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=34.0
Q ss_pred HHHHHhhCCeEEEEccCcch-hh-HHHHHHHH-HhCCCeEEEEcCCCCCC
Q 015613 327 AMEAAKECDAFLVLGSSLMT-MS-AYRLVRAA-HEAGSTIAIVNVGETRA 373 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V-~p-~~~lv~~a-~~~g~~liiIN~~~t~~ 373 (403)
..+.+..+|++|++|+.+.. +| +...+..| +++|+++|.|++-.+..
T Consensus 364 sl~DI~~AD~IlviGsN~~e~hPvl~~~I~~A~k~~gaklIvidPr~~~~ 413 (819)
T PRK08493 364 NLEDIKTSDFVVVAGSALKTDNPLLRYAINNALKMNKASGLYFHPIKDNV 413 (819)
T ss_pred CHHHHhhCCEEEEECCChhhhCHHHHHHHHHHHHhCCCeEEEEecCCchh
Confidence 35567899999999997654 66 34444544 45799999998877654
No 187
>PRK15482 transcriptional regulator MurR; Provisional
Probab=49.66 E-value=43 Score=32.64 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=44.9
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEc-CCCCCCCCcccEEEECcH
Q 015613 329 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDLTTLKISARL 385 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN-~~~t~~d~~~~l~I~~~~ 385 (403)
..+.+-|++|++.-|-.+.-....++.++++|+++|.|- ...++....+|+.|.-..
T Consensus 178 ~~~~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~~ 235 (285)
T PRK15482 178 QALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVS 235 (285)
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcCC
Confidence 456788999999999999999999999999999987774 445666667777765433
No 188
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=49.48 E-value=13 Score=32.76 Aligned_cols=21 Identities=14% Similarity=0.411 Sum_probs=14.4
Q ss_pred eeeccceeeEEcCCCCcccch
Q 015613 223 LELHGTVYTVVCLDCGFSFCR 243 (403)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~~ 243 (403)
+++.=--...+|.+|++.+..
T Consensus 62 L~i~~~p~~~~C~~CG~~~~~ 82 (135)
T PRK03824 62 IIFEEEEAVLKCRNCGNEWSL 82 (135)
T ss_pred EEEEecceEEECCCCCCEEec
Confidence 444444467899999988754
No 189
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=49.18 E-value=12 Score=34.84 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=9.1
Q ss_pred EEcCCCCcccc
Q 015613 232 VVCLDCGFSFC 242 (403)
Q Consensus 232 ~~C~~C~~~~~ 242 (403)
.+|..|++.|+
T Consensus 140 ~rC~GC~~~f~ 150 (177)
T COG1439 140 LRCHGCKRIFP 150 (177)
T ss_pred EEEecCceecC
Confidence 59999998874
No 190
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=48.22 E-value=25 Score=35.88 Aligned_cols=51 Identities=14% Similarity=0.248 Sum_probs=34.9
Q ss_pred hhCCeEEEEccCcch-hhHH--HHHHHH-------HhCCCeEEEEcCCCCCCCCcccEEEE
Q 015613 332 KECDAFLVLGSSLMT-MSAY--RLVRAA-------HEAGSTIAIVNVGETRADDLTTLKIS 382 (403)
Q Consensus 332 ~~aDllLVVGTSL~V-~p~~--~lv~~a-------~~~g~~liiIN~~~t~~d~~~~l~I~ 382 (403)
+++|++|++|+.... .|.. ++...+ .++|++++.|++..+.....+|..|.
T Consensus 130 ~~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta~~Ad~~l~ 190 (415)
T cd02761 130 NRADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTAKLADIHLQ 190 (415)
T ss_pred hcCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchhhhcceEEe
Confidence 479999999987554 4432 221111 14688999999998888777776654
No 191
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=47.56 E-value=33 Score=38.96 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=37.2
Q ss_pred HHHhhCCeEEEEccCcch-hh--HHHHHHHH-HhCCCeEEEEcCCCCCCCCcccEEEE
Q 015613 329 EAAKECDAFLVLGSSLMT-MS--AYRLVRAA-HEAGSTIAIVNVGETRADDLTTLKIS 382 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V-~p--~~~lv~~a-~~~g~~liiIN~~~t~~d~~~~l~I~ 382 (403)
+.+..+|++|++|+.... .| +.++.... +++|+++|.|++-.+.....+|+.|.
T Consensus 202 ~Di~~ad~il~~G~Np~~~~p~~~~~i~~a~~~~~GakliviDPr~t~ta~~Ad~~l~ 259 (830)
T TIGR01706 202 DDFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKVKVVVLSTFTHRSFDLADIGII 259 (830)
T ss_pred hHHhhCCEEEEEcCCcchhCCHHHHHHHHHHhccCCCEEEEECCCCCchhHHhCeeec
Confidence 466899999999987554 33 23443322 24699999999988877666666543
No 192
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=47.45 E-value=9.3 Score=45.18 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=19.1
Q ss_pred CCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCC
Q 015613 299 PTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECD 335 (403)
Q Consensus 299 P~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aD 335 (403)
-+||+|||.+-+.|- +.--...++-|....++-+
T Consensus 1558 G~C~kCGg~~ilTV~---kGsv~KYl~~a~~~~~~y~ 1591 (1627)
T PRK14715 1558 GKCPKCGSKLILTVS---KGAVEKYMPVAKMMAEKYN 1591 (1627)
T ss_pred CcCcccCCeEEEEEe---cchHHHHHHHHHHHHHHcC
Confidence 469999997766664 2222223444555444433
No 193
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=47.37 E-value=9.9 Score=32.44 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=13.9
Q ss_pred eeeccceeeEEcCCCCcccch
Q 015613 223 LELHGTVYTVVCLDCGFSFCR 243 (403)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~~ 243 (403)
++++=-=...+|.+|++.|..
T Consensus 62 L~Ie~~p~~~~C~~Cg~~~~~ 82 (113)
T PF01155_consen 62 LEIEEVPARARCRDCGHEFEP 82 (113)
T ss_dssp EEEEEE--EEEETTTS-EEEC
T ss_pred EEEEecCCcEECCCCCCEEec
Confidence 666666677899999998753
No 194
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=47.29 E-value=12 Score=23.81 Aligned_cols=9 Identities=22% Similarity=0.523 Sum_probs=7.0
Q ss_pred CCCCCCCCc
Q 015613 299 PTCQKCNGV 307 (403)
Q Consensus 299 P~Cp~Cgg~ 307 (403)
-.||.||-.
T Consensus 15 ~~Cp~CG~~ 23 (26)
T PF10571_consen 15 KFCPHCGYD 23 (26)
T ss_pred CcCCCCCCC
Confidence 469999964
No 195
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=46.92 E-value=14 Score=34.02 Aligned_cols=11 Identities=36% Similarity=0.960 Sum_probs=9.6
Q ss_pred eEEcCCCCccc
Q 015613 231 TVVCLDCGFSF 241 (403)
Q Consensus 231 ~~~C~~C~~~~ 241 (403)
.++|..||+.+
T Consensus 134 ~~vC~vCGy~~ 144 (166)
T COG1592 134 VWVCPVCGYTH 144 (166)
T ss_pred EEEcCCCCCcc
Confidence 78999999875
No 196
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=46.13 E-value=13 Score=29.02 Aligned_cols=17 Identities=35% Similarity=0.644 Sum_probs=15.1
Q ss_pred eeccceeeEEcCCCCcc
Q 015613 224 ELHGTVYTVVCLDCGFS 240 (403)
Q Consensus 224 elHGs~~~~~C~~C~~~ 240 (403)
+.+|.+.++.|.+|+..
T Consensus 12 ~p~s~Fl~VkCpdC~N~ 28 (67)
T COG2051 12 EPRSRFLRVKCPDCGNE 28 (67)
T ss_pred CCCceEEEEECCCCCCE
Confidence 78999999999999953
No 197
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=45.73 E-value=17 Score=31.21 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=13.5
Q ss_pred eeeccceeeEEcCCCCcccc
Q 015613 223 LELHGTVYTVVCLDCGFSFC 242 (403)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~ 242 (403)
++++=--...+|.+|++.+.
T Consensus 62 L~I~~~p~~~~C~~Cg~~~~ 81 (115)
T TIGR00100 62 LNIEDEPVECECEDCSEEVS 81 (115)
T ss_pred EEEEeeCcEEEcccCCCEEe
Confidence 44444445679999997764
No 198
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=45.25 E-value=27 Score=37.87 Aligned_cols=28 Identities=18% Similarity=0.457 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCccC
Q 015613 110 EDINQLYQFFDNSAKLIVLTGAGISTEC 137 (403)
Q Consensus 110 ~~l~~l~~~l~~ak~IVVlTGAGIStsS 137 (403)
+++++++++|.+|++.||+.|.|..-+.
T Consensus 188 ~~i~~aa~~L~~AkrPvIl~G~G~~~a~ 215 (550)
T COG0028 188 EAIRKAAELLAEAKRPVILAGGGVRRAG 215 (550)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccc
Confidence 8899999999999999999999998776
No 199
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=45.22 E-value=23 Score=41.20 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=24.2
Q ss_pred CCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcch
Q 015613 299 PTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMT 346 (403)
Q Consensus 299 P~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V 346 (403)
+.||.||+.- |. --....+...+...++|-+| |||---+
T Consensus 709 ~~cP~Cgs~~---v~-----d~~~~ve~lRelA~EvDeVl-IgTDPDt 747 (1187)
T COG1110 709 DKCPRCGSRN---VE-----DKTETVEALRELALEVDEIL-IGTDPDT 747 (1187)
T ss_pred ccCCCCCCcc---cc-----ccHHHHHHHHHHHhhcCEEE-EcCCCCC
Confidence 4799999741 11 01234566667777999864 6775555
No 200
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=45.01 E-value=37 Score=40.28 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=44.2
Q ss_pred HHhhCCeEEEEccCcch--hhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEE--EECcHHHHH
Q 015613 330 AAKECDAFLVLGSSLMT--MSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLK--ISARLGEIL 389 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V--~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~--I~~~~~evL 389 (403)
.+..++++|+.|+.... .|....+..++++|+++|.|.+..+.....+|.. |+-.-+-+|
T Consensus 242 D~~nS~~II~WGsN~~~T~~p~a~~l~eAr~rGaKvVVVDPr~t~tA~~AD~WLpIrPGTD~AL 305 (1235)
T TIGR01580 242 DWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPKQGTDAAL 305 (1235)
T ss_pred hhhcCCEEEEECCChhhhcchhHHHHHHHHHcCCeEEEEcCCCChhhHhhCEEeCCCCChHHHH
Confidence 34589999999997544 4566777778889999999999988877777765 443344333
No 201
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=44.59 E-value=63 Score=31.69 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=52.5
Q ss_pred ccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEEC
Q 015613 308 LKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISA 383 (403)
Q Consensus 308 lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~ 383 (403)
+...+..+.+..-. + .....+.+-|++|++.-|-.+.-....++.++++|+++|-| +...++....+|+.+..
T Consensus 155 ig~~~~~~~d~~~~--~-~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~ 228 (281)
T COG1737 155 IGLNVVALSDTHGQ--L-MQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLV 228 (281)
T ss_pred cCCceeEecchHHH--H-HHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEec
Confidence 33445554444222 1 24456778999999999998888889999999999998777 44467777777777554
No 202
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=44.41 E-value=15 Score=24.73 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=8.9
Q ss_pred ccceeeEEcCCCCccc
Q 015613 226 HGTVYTVVCLDCGFSF 241 (403)
Q Consensus 226 HGs~~~~~C~~C~~~~ 241 (403)
.|.+...+|.+|+..+
T Consensus 6 ~~~l~~~rC~~Cg~~~ 21 (37)
T PF12172_consen 6 EGRLLGQRCRDCGRVQ 21 (37)
T ss_dssp TT-EEEEE-TTT--EE
T ss_pred CCEEEEEEcCCCCCEe
Confidence 4667778999999753
No 203
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=44.13 E-value=62 Score=32.23 Aligned_cols=46 Identities=30% Similarity=0.409 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCC
Q 015613 323 RADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVG 369 (403)
Q Consensus 323 ~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~ 369 (403)
+.+.+.+..+++|++||||..-. ....+|.+-+++.|.+.+.|...
T Consensus 199 RQ~a~~~La~~vD~miVIGg~~S-sNT~kL~eia~~~~~~t~~Ie~~ 244 (281)
T PF02401_consen 199 RQEAARELAKEVDAMIVIGGKNS-SNTRKLAEIAKEHGKPTYHIETA 244 (281)
T ss_dssp HHHHHHHHHCCSSEEEEES-TT--HHHHHHHHHHHHCTTCEEEESSG
T ss_pred HHHHHHHHHhhCCEEEEecCCCC-ccHHHHHHHHHHhCCCEEEeCCc
Confidence 45556777789999999997554 44568888888888888888744
No 204
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=43.94 E-value=44 Score=30.14 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=41.1
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEEC
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISA 383 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~ 383 (403)
.+.+-|++|++..|-.+.-...+++.++++|+++|.| +...++....+|+.|.-
T Consensus 72 ~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~ 126 (179)
T cd05005 72 AIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVI 126 (179)
T ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEe
Confidence 3578899999998888888889999999999997666 44555665666665543
No 205
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.64 E-value=12 Score=30.33 Aligned_cols=10 Identities=50% Similarity=1.238 Sum_probs=7.4
Q ss_pred CCCCCCCCCc
Q 015613 298 IPTCQKCNGV 307 (403)
Q Consensus 298 iP~Cp~Cgg~ 307 (403)
+-.||+|+|+
T Consensus 21 iD~CPrCrGV 30 (88)
T COG3809 21 IDYCPRCRGV 30 (88)
T ss_pred eeeCCccccE
Confidence 3459999984
No 206
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=43.12 E-value=72 Score=30.78 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=43.4
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEc-CCCCCCCCcccEEEE
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDLTTLKIS 382 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN-~~~t~~d~~~~l~I~ 382 (403)
+...+.+-|++|++.-|-........++.++++|+++|.|= ...++....+|+.|.
T Consensus 169 ~~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~ 225 (278)
T PRK11557 169 TVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLY 225 (278)
T ss_pred HHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEE
Confidence 44567889999999888877778888899999999987774 445666667777765
No 207
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=42.73 E-value=25 Score=29.61 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHhCCCceEEeccccchHHHhCCCceee--ccceeeEEcCCCCcccch
Q 015613 187 PNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLEL--HGTVYTVVCLDCGFSFCR 243 (403)
Q Consensus 187 Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~iel--HGs~~~~~C~~C~~~~~~ 243 (403)
.+..|+.|..|++.|.+..+-+.|--.. +++ +..-..+.|..||+..+-
T Consensus 42 ~~TVYR~L~~L~e~Gli~~~~~~~~~~~--------Y~~~~~~~h~h~iC~~Cg~v~~~ 92 (120)
T PF01475_consen 42 LATVYRTLDLLEEAGLIRKIEFGDGESR--------YELSTCHHHHHFICTQCGKVIDL 92 (120)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTSEEE--------EEESSSSSCEEEEETTTS-EEEE
T ss_pred HHHHHHHHHHHHHCCeEEEEEcCCCcce--------EeecCCCcceEEEECCCCCEEEe
Confidence 3467999999999998866544422212 333 345566999999987653
No 208
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=42.63 E-value=1.8e+02 Score=26.16 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=47.3
Q ss_pred HHHHHHhhCCeEEEEccCcch-hhHHHHHHHHHhCCCeEEEEcCCCC--------------CCCCcccEEEECcHHHHHH
Q 015613 326 KAMEAAKECDAFLVLGSSLMT-MSAYRLVRAAHEAGSTIAIVNVGET--------------RADDLTTLKISARLGEILP 390 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V-~p~~~lv~~a~~~g~~liiIN~~~t--------------~~d~~~~l~I~~~~~evL~ 390 (403)
...+.++.+-.+-|||-|-.- -|..+...+..++|-+++-||+... ..+...|++.-=.-.+.++
T Consensus 8 ~i~~iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR~~e~~~ 87 (140)
T COG1832 8 DIAEILKSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFRRSEAAP 87 (140)
T ss_pred HHHHHHHhCceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEecChhhhH
Confidence 456677889999999987765 6677777788889999999999422 1234555553333455555
Q ss_pred HHHH
Q 015613 391 RVLD 394 (403)
Q Consensus 391 ~L~~ 394 (403)
++++
T Consensus 88 ~i~~ 91 (140)
T COG1832 88 EVAR 91 (140)
T ss_pred HHHH
Confidence 5543
No 209
>PRK08197 threonine synthase; Validated
Probab=42.40 E-value=18 Score=37.36 Aligned_cols=15 Identities=27% Similarity=0.622 Sum_probs=11.7
Q ss_pred eeeEEcCCCCcccch
Q 015613 229 VYTVVCLDCGFSFCR 243 (403)
Q Consensus 229 ~~~~~C~~C~~~~~~ 243 (403)
+..++|..|++.|+.
T Consensus 5 ~~~~~C~~Cg~~~~~ 19 (394)
T PRK08197 5 VSHLECSKCGETYDA 19 (394)
T ss_pred eeEEEECCCCCCCCC
Confidence 345899999998863
No 210
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=42.31 E-value=61 Score=26.77 Aligned_cols=82 Identities=22% Similarity=0.192 Sum_probs=46.2
Q ss_pred cEEecCCCCcHHHHHHHHHHHhhCCeEEEEc-cCcchhhHHHHHHHHHhC--CCeEEEEcCCCCCCC-------CcccEE
Q 015613 311 DVVFFGDNVPKDRADKAMEAAKECDAFLVLG-SSLMTMSAYRLVRAAHEA--GSTIAIVNVGETRAD-------DLTTLK 380 (403)
Q Consensus 311 ~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVG-TSL~V~p~~~lv~~a~~~--g~~liiIN~~~t~~d-------~~~~l~ 380 (403)
+|.++|-+.+.+.+.+.... .+.|++.+=. .+-....+.++++..++. +.+++.=....+..+ ..+|..
T Consensus 30 ~v~~~d~~~~~~~l~~~~~~-~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l~~~~~~D~v 108 (121)
T PF02310_consen 30 EVDILDANVPPEELVEALRA-ERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHATADPEEILREYPGIDYV 108 (121)
T ss_dssp EEEEEESSB-HHHHHHHHHH-TTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHHHHHHHTSEEE
T ss_pred eEEEECCCCCHHHHHHHHhc-CCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchhcChHHHhccCcCccee
Confidence 45555555554333222222 2678765544 344446667777776654 456666666655332 345788
Q ss_pred EECcHHHHHHHHH
Q 015613 381 ISARLGEILPRVL 393 (403)
Q Consensus 381 I~~~~~evL~~L~ 393 (403)
+.|+.++++++|+
T Consensus 109 v~GegE~~~~~l~ 121 (121)
T PF02310_consen 109 VRGEGEEAFPELL 121 (121)
T ss_dssp EEETTSSHHHH--
T ss_pred cCCChHHhhcccC
Confidence 8888888888774
No 211
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=41.19 E-value=24 Score=35.52 Aligned_cols=43 Identities=26% Similarity=0.617 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeCCCCCccCCCCCcCCCC
Q 015613 98 KKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPN 146 (403)
Q Consensus 98 ~~~~~~~~~p~~~~l~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~ 146 (403)
|+.+|.+.|-..-..+.+..+| +...|+|++|-| |||-+.+.+
T Consensus 157 rrvV~SP~P~~iv~~~~I~~Ll-~~g~IpI~~Ggg-----GiPv~~~~~ 199 (308)
T cd04235 157 RRVVPSPKPKDIVEIEAIKTLV-DNGVIVIAAGGG-----GIPVVREGG 199 (308)
T ss_pred eeeeCCCCCccccCHHHHHHHH-HCCCEEEEECCC-----ccCEEEcCC
Confidence 4455543333333333344444 478899999888 999988653
No 212
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=41.11 E-value=14 Score=31.76 Aligned_cols=25 Identities=16% Similarity=0.458 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCCcc
Q 015613 112 INQLYQFFDNSAKLIVLTGAGISTE 136 (403)
Q Consensus 112 l~~l~~~l~~ak~IVVlTGAGISts 136 (403)
+++++++|++|++.++++|.|...+
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~ 25 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRS 25 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHT
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChh
Confidence 5789999999999999999998844
No 213
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=40.98 E-value=79 Score=30.79 Aligned_cols=55 Identities=24% Similarity=0.222 Sum_probs=41.5
Q ss_pred HHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEE
Q 015613 328 MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKIS 382 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~ 382 (403)
...+.+-|++|++-.|-.+.-...++..++++|+++|.| +...++....+|+.|.
T Consensus 182 ~~~~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~ 237 (292)
T PRK11337 182 AALLQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVIC 237 (292)
T ss_pred HhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEE
Confidence 345678899999988888877888999999999998777 4444555566666654
No 214
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=40.88 E-value=93 Score=29.96 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=43.2
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEE
Q 015613 329 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 382 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~ 382 (403)
..+.+-|++|++..|-.+.-..+.++.++++|+++|.|=...++....+|+.|.
T Consensus 171 ~~~~~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~~~s~l~~~ad~~l~ 224 (284)
T PRK11302 171 MNSSDGDVVVLISHTGRTKSLVELAQLARENGATVIAITSAGSPLAREATLALT 224 (284)
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEECCCCChhHHhCCEEEe
Confidence 445788999999888888888889999999999988886445566667777664
No 215
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=40.71 E-value=16 Score=26.93 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=8.8
Q ss_pred eEEcCCCCccc
Q 015613 231 TVVCLDCGFSF 241 (403)
Q Consensus 231 ~~~C~~C~~~~ 241 (403)
...|..|++.+
T Consensus 6 ~Y~C~~Cg~~~ 16 (49)
T COG1996 6 EYKCARCGREV 16 (49)
T ss_pred EEEhhhcCCee
Confidence 45899999876
No 216
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=40.39 E-value=66 Score=28.66 Aligned_cols=94 Identities=14% Similarity=0.196 Sum_probs=56.6
Q ss_pred CCCCCCC-Cccc--CcEEecCCCCcHHHHHHHHHHHhhCCeEEEE-ccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCC-
Q 015613 299 PTCQKCN-GVLK--PDVVFFGDNVPKDRADKAMEAAKECDAFLVL-GSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRA- 373 (403)
Q Consensus 299 P~Cp~Cg-g~lr--P~Vv~FgE~~p~~~~~~a~~~~~~aDllLVV-GTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~- 373 (403)
.....|| ..|- |+-.|-+..-..-.--+....+++||+++|. |-..+...++--.-++...|.++|++-...-.-
T Consensus 35 ~~SD~~G~~iLG~e~~~fw~D~k~a~iN~iRT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~Hp 114 (141)
T PF11071_consen 35 EASDDCGVDILGEEPNKFWRDHKGAKINAIRTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEELHHP 114 (141)
T ss_pred hhhhhhhHHHhCCCCccccccchhhhhhHHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhcccc
Confidence 3445677 3332 4444433333222233556788999988775 888888777766677777899999998775421
Q ss_pred -CC--cccEEEECcHHHHHHHH
Q 015613 374 -DD--LTTLKISARLGEILPRV 392 (403)
Q Consensus 374 -d~--~~~l~I~~~~~evL~~L 392 (403)
.+ .+...+....++|+.-|
T Consensus 115 LKEvda~A~a~~et~~Qvv~iL 136 (141)
T PF11071_consen 115 LKEVDAAALAVAETPEQVVEIL 136 (141)
T ss_pred HHHHhHhhHhhhCCHHHHHHHH
Confidence 11 23344555566666444
No 217
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=40.26 E-value=86 Score=35.05 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=31.4
Q ss_pred HHHHhhCCeEEEEccCcch-hh-HHHHHHHHHhCC-CeEEEEcCCCCC
Q 015613 328 MEAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAG-STIAIVNVGETR 372 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V-~p-~~~lv~~a~~~g-~~liiIN~~~t~ 372 (403)
.+.++++|++|++|+.... .| ...-++.+.++| .+++.|++..+.
T Consensus 359 i~dIe~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~~~ 406 (687)
T PRK09130 359 IAGIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQADL 406 (687)
T ss_pred HHHHHhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCcccc
Confidence 4567899999999998644 44 233344455556 599999987554
No 218
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=40.13 E-value=31 Score=39.29 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=30.3
Q ss_pred HHHhhCCeEEEEccCcch-hh-HHHHHHHHHhCCCeEEEEcCC
Q 015613 329 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVG 369 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V-~p-~~~lv~~a~~~g~~liiIN~~ 369 (403)
+.++.+|++|++|+.+.. .| ....++.+.++|++++.|++.
T Consensus 367 ~di~~ad~Ilv~G~N~~~~~p~~~~~i~~a~~~gaklividpr 409 (847)
T PRK08166 367 REIESYDAVLVLGEDLTQTAARVALAVRQAVKGKAREMAAAQK 409 (847)
T ss_pred HHHHhCCEEEEEeCChHHhhHHHHHHHHHHHHcCCceEeeccc
Confidence 456789999999998754 44 445556677789988877764
No 219
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=39.89 E-value=57 Score=34.81 Aligned_cols=54 Identities=7% Similarity=0.113 Sum_probs=37.9
Q ss_pred HHhhCCeEEEEccCcchh---h--HHHHHHHHHhCC-----CeEEEEcCCCCCCCCcccEEEEC
Q 015613 330 AAKECDAFLVLGSSLMTM---S--AYRLVRAAHEAG-----STIAIVNVGETRADDLTTLKISA 383 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~---p--~~~lv~~a~~~g-----~~liiIN~~~t~~d~~~~l~I~~ 383 (403)
.++++|++|++|+..... | ..+....++++| .++|.|++-.+.....+|..|.=
T Consensus 193 D~~~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDPr~s~ta~~Ad~~l~i 256 (524)
T cd02764 193 DFDKAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESVYTLTGANADVRLAI 256 (524)
T ss_pred ChhHCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEecCCCchhhhhcceecc
Confidence 567999999999976542 1 233333444444 49999999999887777776543
No 220
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=39.52 E-value=21 Score=27.33 Aligned_cols=18 Identities=17% Similarity=0.493 Sum_probs=15.2
Q ss_pred CCCCCCCCCCcccCcEEe
Q 015613 297 HIPTCQKCNGVLKPDVVF 314 (403)
Q Consensus 297 ~iP~Cp~Cgg~lrP~Vv~ 314 (403)
..|.||-|++.|+..+.+
T Consensus 38 ~~p~CPlC~s~M~~~~r~ 55 (59)
T PF14169_consen 38 EEPVCPLCKSPMVSGTRM 55 (59)
T ss_pred CCccCCCcCCccccceee
Confidence 469999999999987764
No 221
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=39.42 E-value=53 Score=33.43 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=34.5
Q ss_pred hhCCeEEEEccCcch-hhH--HHH-------HHHHHhCCCeEEEEcCCCCCCCCcccEEEE
Q 015613 332 KECDAFLVLGSSLMT-MSA--YRL-------VRAAHEAGSTIAIVNVGETRADDLTTLKIS 382 (403)
Q Consensus 332 ~~aDllLVVGTSL~V-~p~--~~l-------v~~a~~~g~~liiIN~~~t~~d~~~~l~I~ 382 (403)
+++|++|++|+.... .|. .++ .....++|++++.|++..+.....+|..|.
T Consensus 136 ~~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t~~~ad~~l~ 196 (421)
T TIGR03129 136 NRADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDTAKLADYHLQ 196 (421)
T ss_pred hcCCEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCcchhhcceec
Confidence 469999999986543 442 222 122225688999999998887777776553
No 222
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=39.00 E-value=12 Score=24.97 Aligned_cols=11 Identities=64% Similarity=1.449 Sum_probs=7.2
Q ss_pred CCCCCC-CcccC
Q 015613 300 TCQKCN-GVLKP 310 (403)
Q Consensus 300 ~Cp~Cg-g~lrP 310 (403)
.||+|| |+|.|
T Consensus 3 lcpkcgvgvl~p 14 (36)
T PF09151_consen 3 LCPKCGVGVLEP 14 (36)
T ss_dssp B-TTTSSSBEEE
T ss_pred cCCccCceEEEE
Confidence 499998 56655
No 223
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=38.84 E-value=62 Score=24.81 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=31.0
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE
Q 015613 329 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV 366 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI 366 (403)
..+.+-|+++++-.|-...-...+++.++++|++++.|
T Consensus 43 ~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~i 80 (87)
T cd04795 43 SLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAI 80 (87)
T ss_pred hcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEE
Confidence 45668899999987777777788888899999998766
No 224
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=38.30 E-value=1.7e+02 Score=30.64 Aligned_cols=91 Identities=15% Similarity=0.222 Sum_probs=53.6
Q ss_pred cEEecCCCCc--HHHHHHHHHHHh-hCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCC---------------
Q 015613 311 DVVFFGDNVP--KDRADKAMEAAK-ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETR--------------- 372 (403)
Q Consensus 311 ~Vv~FgE~~p--~~~~~~a~~~~~-~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~--------------- 372 (403)
++.+|+.-=. ..+.+.+.+... ++|++||||..-. ....+|++-+.+.|.+...|+...--
T Consensus 263 ~~~v~nTIC~AT~~RQ~A~~~La~~~vD~miVVGG~nS-SNT~rL~eia~~~g~~ty~Ie~~~eL~~~~~i~h~~~~~~~ 341 (387)
T PRK13371 263 HFLSFNTICDATQERQDAMFSLVEEPLDLMVVIGGYNS-SNTTHLQEIAIERGIPSYHIDSPERILSGNSIEHKPLGKEL 341 (387)
T ss_pred cccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCC-ccHHHHHHHHHhcCCCEEEECCHHHcCCccccccccccchh
Confidence 5666654322 223344445544 6999999996432 22357777777778888888744221
Q ss_pred ------CCC-cccEEEECcH-------HHHHHHHHHhCCCCCCC
Q 015613 373 ------ADD-LTTLKISARL-------GEILPRVLDVGSLSIPA 402 (403)
Q Consensus 373 ------~d~-~~~l~I~~~~-------~evL~~L~~~~~~~~~~ 402 (403)
+.. ...+-|.+.+ .+|+..|....++.+|.
T Consensus 342 ~~t~~wl~~~~~~VGITAGASTP~~lI~eVi~~l~~l~~~~~~~ 385 (387)
T PRK13371 342 VVTENWLPEGPVTVGITSGASTPDKVVEDVIEKIFALKEDARPV 385 (387)
T ss_pred hhhhhhhccCCCEEEEecCCCCCHHHHHHHHHHHHHhhcccccc
Confidence 111 2234455544 46777777777877775
No 225
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=37.75 E-value=32 Score=38.62 Aligned_cols=50 Identities=20% Similarity=0.368 Sum_probs=36.4
Q ss_pred HHhhCCeEEEEccCcch-hhHHH----HHHHHHhCCCeEEEEcCCCCCCCCcccE
Q 015613 330 AAKECDAFLVLGSSLMT-MSAYR----LVRAAHEAGSTIAIVNVGETRADDLTTL 379 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V-~p~~~----lv~~a~~~g~~liiIN~~~t~~d~~~~l 379 (403)
.++.+|++|++|+.... .|... ....+++.|+++|.|++..+.....+|+
T Consensus 196 D~~~a~~iv~~G~N~~~~~~~~~~~~~~~~~~~~~~~kviviDP~~t~Ta~~ad~ 250 (765)
T COG0243 196 DIENADLIVLWGSNPAEAHPVLGRGLLLAKAAKRSGAKVIVIDPRRTETAALADL 250 (765)
T ss_pred hHhcCCEEEEECCChHHhCcchhhHHHHHHHhccCCCEEEEECCCCChhHHhhCC
Confidence 38999999999997766 54322 3344456788999999998877655554
No 226
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=37.65 E-value=89 Score=31.13 Aligned_cols=47 Identities=28% Similarity=0.396 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCC
Q 015613 322 DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVG 369 (403)
Q Consensus 322 ~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~ 369 (403)
++.+.+.+...++|++||||..-. .-..+|++-+.+.|.+.+.|...
T Consensus 197 ~RQ~a~~~la~~vD~miVVGg~nS-sNT~rL~ei~~~~~~~t~~Ie~~ 243 (280)
T TIGR00216 197 NRQDAVKELAPEVDLMIVIGGKNS-SNTTRLYEIAEEHGPPSYLIETA 243 (280)
T ss_pred HHHHHHHHHHhhCCEEEEECCCCC-chHHHHHHHHHHhCCCEEEECCh
Confidence 345566777889999999996432 23357777777778888888744
No 227
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=37.53 E-value=14 Score=38.20 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=12.9
Q ss_pred ccceeeEEcCCCCcccc
Q 015613 226 HGTVYTVVCLDCGFSFC 242 (403)
Q Consensus 226 HGs~~~~~C~~C~~~~~ 242 (403)
-|-|+.--|.+|+..+.
T Consensus 235 ~GKYh~~~c~~C~~~~~ 251 (374)
T TIGR00375 235 LGKYHQTACEACGEPAV 251 (374)
T ss_pred CCccchhhhcccCCcCC
Confidence 47777889999987653
No 228
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=36.85 E-value=22 Score=35.37 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=12.8
Q ss_pred CCCCCCCCC--cccCcEEecC
Q 015613 298 IPTCQKCNG--VLKPDVVFFG 316 (403)
Q Consensus 298 iP~Cp~Cgg--~lrP~Vv~Fg 316 (403)
.+.||+||+ -++|-.-+-|
T Consensus 368 ~~~c~~c~~~~~~~~~~~~~~ 388 (389)
T PRK11788 368 YWHCPSCKAWETIKPIRGLDG 388 (389)
T ss_pred eeECcCCCCccCcCCcccCCC
Confidence 588999997 4666544433
No 229
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=36.26 E-value=93 Score=27.77 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=47.2
Q ss_pred CCCCCCC-Cccc--CcEEecCCCCcHHHHHHHHHHHhhCCeEEEE-ccCcchhhHHHHHHHHHhCCCeEEEEcCCCC
Q 015613 299 PTCQKCN-GVLK--PDVVFFGDNVPKDRADKAMEAAKECDAFLVL-GSSLMTMSAYRLVRAAHEAGSTIAIVNVGET 371 (403)
Q Consensus 299 P~Cp~Cg-g~lr--P~Vv~FgE~~p~~~~~~a~~~~~~aDllLVV-GTSL~V~p~~~lv~~a~~~g~~liiIN~~~t 371 (403)
.....|| ..|- |+-.|-+..-..-.--+....+++||+++|- |-..+...++--.-++...|.++|++....-
T Consensus 38 ~aSD~~G~~iLG~e~~~fw~D~k~a~iNaiRT~~li~~aDvvVvrFGekYKQWNaAfDAg~aaAlgKplI~lh~~~~ 114 (144)
T TIGR03646 38 EASDNIGEDILGKQPSNFWRDDAAASINNIRTRKLIEKADVVIALFGEKYKQWNAAFDAGYAAALGKPLIILRPEEL 114 (144)
T ss_pred cchhhhhHHHhCCCCccccccccccchhhHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhc
Confidence 3445677 3332 3444433332222233556788999988774 9888887777666677778999999987653
No 230
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=36.17 E-value=30 Score=23.14 Aligned_cols=10 Identities=20% Similarity=0.521 Sum_probs=7.1
Q ss_pred CCCCCCCCCc
Q 015613 298 IPTCQKCNGV 307 (403)
Q Consensus 298 iP~Cp~Cgg~ 307 (403)
.-+|+.||..
T Consensus 17 ~irC~~CG~R 26 (32)
T PF03604_consen 17 PIRCPECGHR 26 (32)
T ss_dssp TSSBSSSS-S
T ss_pred cEECCcCCCe
Confidence 3589999974
No 231
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=35.90 E-value=89 Score=28.85 Aligned_cols=23 Identities=4% Similarity=0.108 Sum_probs=20.0
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCC
Q 015613 112 INQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 112 l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
-+.++++|++|++-|++.|.|+.
T Consensus 24 p~~aa~lI~~AKrPlIivG~ga~ 46 (171)
T PRK00945 24 PKIAAMMIKKAKRPLLVVGSLLL 46 (171)
T ss_pred HHHHHHHHHhCCCcEEEECcCcc
Confidence 35888899999999999999975
No 232
>PRK05638 threonine synthase; Validated
Probab=35.83 E-value=21 Score=37.50 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=9.8
Q ss_pred eEEcCCCCcccc
Q 015613 231 TVVCLDCGFSFC 242 (403)
Q Consensus 231 ~~~C~~C~~~~~ 242 (403)
+++|..|++.|+
T Consensus 1 ~l~C~~Cg~~~~ 12 (442)
T PRK05638 1 KMKCPKCGREYN 12 (442)
T ss_pred CeEeCCCCCCCC
Confidence 368999998886
No 233
>PRK14717 putative glycine/sarcosine/betaine reductase complex protein A; Provisional
Probab=35.63 E-value=43 Score=28.33 Aligned_cols=37 Identities=22% Similarity=0.468 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCccC---------CCCCcCCCC
Q 015613 109 IEDINQLYQFFDNSAKLIVLTGAGISTEC---------GIPDYRSPN 146 (403)
Q Consensus 109 ~~~l~~l~~~l~~ak~IVVlTGAGIStsS---------GIPdFRs~~ 146 (403)
+..+.++++... +.++||+-||-=.-+| |=|+|.|+=
T Consensus 6 Q~rvk~~aek~g-~eNvvV~lG~aeaEaaglaAETVt~GDPTfAGPL 51 (107)
T PRK14717 6 QKRIKELAEKYG-AENIVVILGAAEAEAAGLAAETVTNGDPTFAGPL 51 (107)
T ss_pred HHHHHHHHHhcC-CccEEEEecCcchhhccceeeeeccCCCcccccc
Confidence 445666666655 6778887775433334 559999884
No 234
>PRK02947 hypothetical protein; Provisional
Probab=35.26 E-value=81 Score=30.40 Aligned_cols=53 Identities=15% Similarity=0.220 Sum_probs=41.1
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCC------------CCCCCcccEEEE
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGE------------TRADDLTTLKIS 382 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~------------t~~d~~~~l~I~ 382 (403)
.+.+-|++|++-.|-.+.....+++.++++|+++|.|=-.+ .++.+.+|+.|.
T Consensus 103 ~~~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~ 167 (246)
T PRK02947 103 DIRPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLD 167 (246)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEE
Confidence 45688999999888888888899999999999988874332 455556776664
No 235
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=34.58 E-value=51 Score=35.03 Aligned_cols=85 Identities=14% Similarity=0.160 Sum_probs=54.4
Q ss_pred CcEEecCCCCcHHH---HHHHHHHHhhCCeEEEEccCcchhhHHHHHH----------HHHhCCCeEEEEcCCCCC----
Q 015613 310 PDVVFFGDNVPKDR---ADKAMEAAKECDAFLVLGSSLMTMSAYRLVR----------AAHEAGSTIAIVNVGETR---- 372 (403)
Q Consensus 310 P~Vv~FgE~~p~~~---~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~----------~a~~~g~~liiIN~~~t~---- 372 (403)
-||++=.-++|.+. +++..+.+.+.|+.||+|-.-.|.|+++--. .+. +-..+++++++-..
T Consensus 355 MNVLLAEA~VPYd~v~eMdeIN~~F~~tDvalVIGANDvVNPaA~~dp~SpIyGMPvL~v~-kAk~Viv~KRs~~~GyAG 433 (462)
T PRK09444 355 MNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVW-KAQNVIVFKRSMNTGYAG 433 (462)
T ss_pred ceeEEeecCCCHHHHHhHHhhccccccCCEEEEecCccCCCcccccCCCCCcCCCceeehh-hCCEEEEEeCCCCCCcCC
Confidence 57888777788774 4455567779999999999999988765311 111 11234444444321
Q ss_pred CCC-----cccEEEECcHHHHHHHHHHh
Q 015613 373 ADD-----LTTLKISARLGEILPRVLDV 395 (403)
Q Consensus 373 ~d~-----~~~l~I~~~~~evL~~L~~~ 395 (403)
.++ ....-+-||+.+.+.+|++.
T Consensus 434 v~NpLF~~~nt~MlfGDAK~~~~~l~~~ 461 (462)
T PRK09444 434 VQNPLFFKENTQMLFGDAKASVDAILKA 461 (462)
T ss_pred CCCcceecCCceEEeccHHHHHHHHHHh
Confidence 222 22344889999999998764
No 236
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=34.25 E-value=30 Score=30.11 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=12.4
Q ss_pred eeeccceeeEEcCCCCcccc
Q 015613 223 LELHGTVYTVVCLDCGFSFC 242 (403)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~ 242 (403)
++++=-=...+| +|++.+.
T Consensus 62 L~I~~vp~~~~C-~Cg~~~~ 80 (124)
T PRK00762 62 LIVEMIPVEIEC-ECGYEGV 80 (124)
T ss_pred EEEEecCeeEEe-eCcCccc
Confidence 444444456799 9997654
No 237
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=34.21 E-value=38 Score=36.09 Aligned_cols=21 Identities=10% Similarity=0.139 Sum_probs=15.7
Q ss_pred eeeccceeeEEcCCCCcccch
Q 015613 223 LELHGTVYTVVCLDCGFSFCR 243 (403)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~~ 243 (403)
..--+.....+|..|++.|+.
T Consensus 417 ~~~~~~~~~~~c~~c~~~yd~ 437 (479)
T PRK05452 417 TTTADLGPRMQCSVCQWIYDP 437 (479)
T ss_pred ccccCCCCeEEECCCCeEECC
Confidence 344556677899999999863
No 238
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=33.97 E-value=2.3e+02 Score=25.35 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=47.9
Q ss_pred CCCcHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCccc----EEEECcHHHHHHHH
Q 015613 317 DNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTT----LKISARLGEILPRV 392 (403)
Q Consensus 317 E~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~----l~I~~~~~evL~~L 392 (403)
+.++.+.++++.+.+.++.-+.++|.+..-..+..+......-|.++..++-.....-..-| +-..|...+++..+
T Consensus 16 ~~l~~~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~i~~~ 95 (179)
T cd05005 16 DKIDEEELDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETSSVVNAA 95 (179)
T ss_pred HhcCHHHHHHHHHHHHhCCeEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcHHHHHHH
Confidence 34566678888889999999999998877666666666555567777776533222111122 22455566665443
No 239
>PF13289 SIR2_2: SIR2-like domain
Probab=33.91 E-value=1.9e+02 Score=24.29 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=29.5
Q ss_pred HHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCC----eEEEEcCCCC
Q 015613 324 ADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGS----TIAIVNVGET 371 (403)
Q Consensus 324 ~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~----~liiIN~~~t 371 (403)
+..+.+.+-.+..+|+||-|+.=..+..+...+.+... +.++|..++.
T Consensus 76 ~~~~l~~~l~~~~~lfiGys~~D~~i~~~l~~~~~~~~~~~~~~~~v~~~~~ 127 (143)
T PF13289_consen 76 FPNFLRSLLRSKTLLFIGYSFNDPDIRQLLRSALENSGKSRPRHYIVIPDPD 127 (143)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHhccCCCccEEEEEcCCc
Confidence 33333444467788889999987777777766554332 3555554443
No 240
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=33.75 E-value=48 Score=30.61 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=17.7
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCC
Q 015613 333 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVG 369 (403)
Q Consensus 333 ~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~ 369 (403)
+.|++|+++|-+ .| .|+..++++|+++++||--
T Consensus 95 ~P~~~i~~EtEl--WP--nll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 95 RPDLLIWVETEL--WP--NLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp --SEEEEES------H--HHHHH-----S-EEEEEE-
T ss_pred CCCEEEEEcccc--CH--HHHHHHhhcCCCEEEEeee
Confidence 459999999977 55 7888888899999999944
No 241
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=33.66 E-value=63 Score=26.78 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=40.2
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEc-CCCCCCCCcccEEEE
Q 015613 329 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDLTTLKIS 382 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN-~~~t~~d~~~~l~I~ 382 (403)
..+.+-|++|++-.|-......+.++.++++|+++|.|= ....+....+|+.|.
T Consensus 49 ~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~ 103 (131)
T PF01380_consen 49 ENLDPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLY 103 (131)
T ss_dssp GGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEE
T ss_pred ccccccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEE
Confidence 344577899999988888888899999999999987774 444555555665544
No 242
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=33.31 E-value=21 Score=22.37 Aligned_cols=9 Identities=22% Similarity=0.741 Sum_probs=4.6
Q ss_pred CCCCCCCCc
Q 015613 299 PTCQKCNGV 307 (403)
Q Consensus 299 P~Cp~Cgg~ 307 (403)
..||.||..
T Consensus 17 ~fC~~CG~~ 25 (26)
T PF13248_consen 17 KFCPNCGAK 25 (26)
T ss_pred ccChhhCCC
Confidence 345555543
No 243
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=33.29 E-value=80 Score=31.44 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=41.3
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEEC
Q 015613 331 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISA 383 (403)
Q Consensus 331 ~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~ 383 (403)
+.+-|++|++-.|-.+......+..+++.|+++|.| +...+.....+|+.|.-
T Consensus 124 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~ 177 (291)
T TIGR00274 124 LTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIET 177 (291)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEec
Confidence 557899999999999988999999999999998777 44445555566766653
No 244
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=33.12 E-value=56 Score=32.82 Aligned_cols=86 Identities=21% Similarity=0.210 Sum_probs=52.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeCCCCCccCCCCCcCCCCCcccCCCCCcChHHHhhChhHHHHHHHHHHhh
Q 015613 99 KAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAG 178 (403)
Q Consensus 99 ~~~~~~~~p~~~~l~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~p~~~~~f~~~~~~~~~fw~~~~~~ 178 (403)
+.+| ++.|..--=.++.+.|-++.++||.+|.| |||..+..+| |..--..++.
T Consensus 161 RVVp-SP~P~~IvE~~~Ik~L~~~g~vVI~~GGG-----GIPVv~~~~~-~~GVeAVIDK-------------------- 213 (312)
T COG0549 161 RVVP-SPKPVRIVEAEAIKALLESGHVVIAAGGG-----GIPVVEEGAG-LQGVEAVIDK-------------------- 213 (312)
T ss_pred EecC-CCCCccchhHHHHHHHHhCCCEEEEeCCC-----CcceEecCCC-cceeeEEEcc--------------------
Confidence 3444 34444322234455556688999999999 9999998887 5421111110
Q ss_pred hhccccCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCCc
Q 015613 179 WRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP 222 (403)
Q Consensus 179 ~~~~~~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~ 222 (403)
..+-..|+++.+ -..+||.+.||+.+..-|-++
T Consensus 214 ---------DlasalLA~~i~--AD~liILTdVd~Vy~n~gkp~ 246 (312)
T COG0549 214 ---------DLASALLAEQID--ADLLIILTDVDAVYVNFGKPN 246 (312)
T ss_pred ---------HHHHHHHHHHhc--CCEEEEEeccchheecCCCcc
Confidence 012334555554 335799999999998887554
No 245
>PLN02569 threonine synthase
Probab=33.04 E-value=23 Score=37.87 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=10.5
Q ss_pred eEEcCCCCcccch
Q 015613 231 TVVCLDCGFSFCR 243 (403)
Q Consensus 231 ~~~C~~C~~~~~~ 243 (403)
.++|..|++.|+-
T Consensus 49 ~l~C~~Cg~~y~~ 61 (484)
T PLN02569 49 FLECPLTGEKYSL 61 (484)
T ss_pred ccEeCCCCCcCCC
Confidence 4799999998863
No 246
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=32.95 E-value=1e+02 Score=28.94 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=39.3
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCc---ccEEE
Q 015613 329 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDL---TTLKI 381 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~---~~l~I 381 (403)
....+-|++|++-+|-........++.++++|+++|.| +....+.... +|+.|
T Consensus 105 ~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i 161 (196)
T PRK10886 105 ALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEI 161 (196)
T ss_pred HcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEE
Confidence 34568899999988888888889999999999997766 4444554442 45543
No 247
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=32.85 E-value=83 Score=29.19 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHhh--CCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCC
Q 015613 320 PKDRADKAMEAAKE--CDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET 371 (403)
Q Consensus 320 p~~~~~~a~~~~~~--aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t 371 (403)
|...++...+.+++ .+-+++|||||--+-+..+.. +-+.+-|+||+.-.
T Consensus 42 p~~a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~---~~~~~avLiNPav~ 92 (187)
T PF05728_consen 42 PEEAIAQLEQLIEELKPENVVLIGSSLGGFYATYLAE---RYGLPAVLINPAVR 92 (187)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHH---HhCCCEEEEcCCCC
Confidence 44455555556554 234899999998888777743 34788899997644
No 248
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=32.82 E-value=20 Score=29.57 Aligned_cols=16 Identities=38% Similarity=0.692 Sum_probs=12.4
Q ss_pred cCCcEEEEeCCCCCcc
Q 015613 121 NSAKLIVLTGAGISTE 136 (403)
Q Consensus 121 ~ak~IVVlTGAGISts 136 (403)
+.++|++..|+|+|++
T Consensus 2 ~~~~ILl~C~~G~sSS 17 (95)
T TIGR00853 2 NETNILLLCAAGMSTS 17 (95)
T ss_pred CccEEEEECCCchhHH
Confidence 3467888899998865
No 249
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=32.53 E-value=45 Score=32.40 Aligned_cols=31 Identities=23% Similarity=0.642 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHcC-CcEEEEeCCCCCccC
Q 015613 107 PSIEDINQLYQFFDNS-AKLIVLTGAGISTEC 137 (403)
Q Consensus 107 p~~~~l~~l~~~l~~a-k~IVVlTGAGIStsS 137 (403)
+..+.+..+++++..| .+|+|+.|||+..+.
T Consensus 153 sa~eg~~~l~~li~~a~gri~Im~GaGV~~~N 184 (241)
T COG3142 153 SALEGLDLLKRLIEQAKGRIIIMAGAGVRAEN 184 (241)
T ss_pred chhhhHHHHHHHHHHhcCCEEEEeCCCCCHHH
Confidence 3456788999999887 799999999998763
No 250
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=32.48 E-value=38 Score=30.05 Aligned_cols=15 Identities=27% Similarity=0.769 Sum_probs=12.5
Q ss_pred cceeeEEcCCCCccc
Q 015613 227 GTVYTVVCLDCGFSF 241 (403)
Q Consensus 227 Gs~~~~~C~~C~~~~ 241 (403)
|.+.-.+|.+||+.|
T Consensus 25 ~kl~g~kC~~CG~v~ 39 (140)
T COG1545 25 GKLLGTKCKKCGRVY 39 (140)
T ss_pred CcEEEEEcCCCCeEE
Confidence 667778999999875
No 251
>PF13289 SIR2_2: SIR2-like domain
Probab=31.52 E-value=26 Score=29.75 Aligned_cols=14 Identities=43% Similarity=0.553 Sum_probs=12.6
Q ss_pred eEEeccccchHHHh
Q 015613 205 CMITQNVDRLHHRA 218 (403)
Q Consensus 205 ~ViTQNIDgLh~rA 218 (403)
.|||+|.|.|.++|
T Consensus 2 ~iiTtNyD~llE~a 15 (143)
T PF13289_consen 2 TIITTNYDDLLEKA 15 (143)
T ss_pred EEEECCHhHHHHHH
Confidence 58999999999876
No 252
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=31.51 E-value=1.2e+02 Score=30.33 Aligned_cols=76 Identities=22% Similarity=0.368 Sum_probs=44.2
Q ss_pred CcEEecCCCCc--HHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCC----CCCCcccEEEEC
Q 015613 310 PDVVFFGDNVP--KDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET----RADDLTTLKISA 383 (403)
Q Consensus 310 P~Vv~FgE~~p--~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t----~~d~~~~l~I~~ 383 (403)
|++..|++-=. ..+.+.+.+..+++|++||||..-. .-..+|++-+.+.|.+...|....- -+.+...+-|.+
T Consensus 184 ~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~S-sNT~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGita 262 (281)
T PRK12360 184 KELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKHS-SNTQKLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITA 262 (281)
T ss_pred cccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCC-ccHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEc
Confidence 45555544321 2345556777789999999996432 2235777767767777778864432 123333455665
Q ss_pred cHH
Q 015613 384 RLG 386 (403)
Q Consensus 384 ~~~ 386 (403)
.++
T Consensus 263 GAS 265 (281)
T PRK12360 263 GAS 265 (281)
T ss_pred cCC
Confidence 544
No 253
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=31.30 E-value=1.9e+02 Score=28.76 Aligned_cols=54 Identities=13% Similarity=0.012 Sum_probs=41.2
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEECc
Q 015613 331 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISAR 384 (403)
Q Consensus 331 ~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~~ 384 (403)
+.+-|++|.+-.|-.+......+..+++.|+++|.| |...++....+|+.|.-.
T Consensus 129 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~aD~~I~~~ 183 (299)
T PRK05441 129 LTAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKEADIAIEVV 183 (299)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEcC
Confidence 457899999988888888899999999999996655 444555556677766543
No 254
>PRK13936 phosphoheptose isomerase; Provisional
Probab=31.17 E-value=1.2e+02 Score=28.04 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=40.4
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEc-CCCCCCCC---cccEEEECc
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADD---LTTLKISAR 384 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN-~~~t~~d~---~~~l~I~~~ 384 (403)
..++-|++|++-.|-.+.-..+++..++++|+++|.|= ...++... .+|+.|.-.
T Consensus 108 ~~~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~ 166 (197)
T PRK13936 108 LGQPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVP 166 (197)
T ss_pred hCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeC
Confidence 34588999999999888888899999999999988764 34444443 366665433
No 255
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=31.03 E-value=21 Score=29.68 Aligned_cols=12 Identities=42% Similarity=1.060 Sum_probs=9.5
Q ss_pred eEEcCCCCcccc
Q 015613 231 TVVCLDCGFSFC 242 (403)
Q Consensus 231 ~~~C~~C~~~~~ 242 (403)
-.+|-+||+.+.
T Consensus 58 Pa~CkkCGfef~ 69 (97)
T COG3357 58 PARCKKCGFEFR 69 (97)
T ss_pred ChhhcccCcccc
Confidence 468999998764
No 256
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=30.74 E-value=31 Score=36.35 Aligned_cols=12 Identities=33% Similarity=0.916 Sum_probs=9.2
Q ss_pred eEEcCCCCcccc
Q 015613 231 TVVCLDCGFSFC 242 (403)
Q Consensus 231 ~~~C~~C~~~~~ 242 (403)
...|..||+.++
T Consensus 7 ~f~C~~CG~~s~ 18 (456)
T COG1066 7 AFVCQECGYVSP 18 (456)
T ss_pred EEEcccCCCCCc
Confidence 468999997753
No 257
>PRK12474 hypothetical protein; Provisional
Probab=30.71 E-value=69 Score=34.15 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=32.5
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHH---HHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVR---AAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~---~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.+++||++|+||+.+... ...... .......+++.++. ..+|+.++|..|++.+
T Consensus 259 ~~~~~~~~aDlvl~lG~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~------------~~~d~~~~l~~L~~~l 319 (518)
T PRK12474 259 QITAFLKDVEQLVLVGAKPPVS-FFAYPGKPSWGAPPGCEIVYLAQ------------PDEDLAQALQDLADAV 319 (518)
T ss_pred HHHHHHhhCCEEEEECCCCCcc-ccccCCCccccCCCCCEEEEECC------------CCcCHHHHHHHHHHhc
Confidence 3446788999999999986321 000000 00111334444442 1268888998887654
No 258
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=30.71 E-value=87 Score=26.25 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=27.2
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEc
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN 367 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN 367 (403)
.+.+-|++|++--|-.+.-....++.++++|+++|.|=
T Consensus 40 ~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT 77 (119)
T cd05017 40 FVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAIT 77 (119)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 44567888888777777666777777777788776664
No 259
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=30.68 E-value=64 Score=33.70 Aligned_cols=31 Identities=32% Similarity=0.385 Sum_probs=19.0
Q ss_pred HHHhhCCeEEEEccCcch-hhH-H-HHHHHHHhC
Q 015613 329 EAAKECDAFLVLGSSLMT-MSA-Y-RLVRAAHEA 359 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V-~p~-~-~lv~~a~~~ 359 (403)
+.++.+|++|++|+.+.. .|. . ++...++++
T Consensus 141 ~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~ 174 (472)
T cd02771 141 RDIESADAVLVLGEDLTQTAPRIALALRQAARRK 174 (472)
T ss_pred HHHHhCCEEEEEeCCccccchHHHHHHHHHHHcC
Confidence 456789999999987544 443 3 333334445
No 260
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=30.36 E-value=34 Score=40.38 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHcCCcEEEEeCC
Q 015613 110 EDINQLYQFFDNSAKLIVLTGA 131 (403)
Q Consensus 110 ~~l~~l~~~l~~ak~IVVlTGA 131 (403)
+.+..+.++=++..++||.||.
T Consensus 716 ~~~k~li~~g~~l~K~Vvatgn 737 (1444)
T COG2176 716 EIIKKLIKLGKKLNKPVVATGN 737 (1444)
T ss_pred HHHHHHHHHHHHhCCcEEEeCC
Confidence 3455566666677888988885
No 261
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=30.21 E-value=91 Score=29.92 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=30.4
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEc
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN 367 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN 367 (403)
.++..|+++|+-+|-...---.+.+++++.|+++|.+-
T Consensus 101 ~i~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~vT 138 (243)
T COG4821 101 QIRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVT 138 (243)
T ss_pred cCCCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEe
Confidence 45588999999988776545688888999999988773
No 262
>PRK07524 hypothetical protein; Provisional
Probab=30.10 E-value=49 Score=35.34 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
|..+.++++.++|++|++.||++|.|..
T Consensus 186 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 213 (535)
T PRK07524 186 PAPAALAQAAERLAAARRPLILAGGGAL 213 (535)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCChH
Confidence 4567899999999999999999999985
No 263
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=29.82 E-value=26 Score=24.21 Aligned_cols=12 Identities=42% Similarity=0.861 Sum_probs=9.1
Q ss_pred CCCCCCCcccCc
Q 015613 300 TCQKCNGVLKPD 311 (403)
Q Consensus 300 ~Cp~Cgg~lrP~ 311 (403)
.||.||+.|.--
T Consensus 3 ~CP~Cg~~lv~r 14 (39)
T PF01396_consen 3 KCPKCGGPLVLR 14 (39)
T ss_pred CCCCCCceeEEE
Confidence 599999876543
No 264
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=29.55 E-value=98 Score=30.11 Aligned_cols=52 Identities=17% Similarity=0.089 Sum_probs=40.7
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEE
Q 015613 331 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKIS 382 (403)
Q Consensus 331 ~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~ 382 (403)
+.+-|++|.+-.|-.+......++.++++|+++|.| |...++....+|+.|.
T Consensus 116 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~aD~~I~ 168 (257)
T cd05007 116 LTERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIA 168 (257)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEE
Confidence 457899999988999988999999999999998666 5455555556666654
No 265
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=29.44 E-value=59 Score=35.32 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 106 PPSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 106 ~p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
.|..+.+++++++|.+|++.+|++|.|.-
T Consensus 201 ~~~~~~v~~a~~~L~~AkrPvil~G~g~~ 229 (585)
T CHL00099 201 KPTIKRIEQAAKLILQSSQPLLYVGGGAI 229 (585)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEECCCCc
Confidence 35567899999999999999999999994
No 266
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=29.03 E-value=1.4e+02 Score=30.03 Aligned_cols=63 Identities=24% Similarity=0.333 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCC----CCCCcccEEEECcH
Q 015613 322 DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET----RADDLTTLKISARL 385 (403)
Q Consensus 322 ~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t----~~d~~~~l~I~~~~ 385 (403)
.+.+.+.+..+++|++||||..-. .-..+|++-+++.|.+.+.|....- -+.....+-|.+.+
T Consensus 199 ~RQ~a~~~La~~vD~miVVGg~~S-sNT~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGA 265 (298)
T PRK01045 199 NRQEAVKELAPQADLVIVVGSKNS-SNSNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGA 265 (298)
T ss_pred HHHHHHHHHHhhCCEEEEECCCCC-ccHHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecC
Confidence 345567777889999999996332 2234666666666777888864322 12333345555544
No 267
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=29.00 E-value=57 Score=30.11 Aligned_cols=24 Identities=8% Similarity=0.134 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 111 DINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 111 ~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
..+.+.++.++...-|+.|+.|+-
T Consensus 51 a~e~l~elaEkl~iPVvtT~~~~~ 74 (171)
T PRK00945 51 LLDRAVKIAKKANIPVAATGGSYK 74 (171)
T ss_pred HHHHHHHHHHHHCCCEEEcccccc
Confidence 455566666666666666666444
No 268
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=28.87 E-value=61 Score=35.45 Aligned_cols=29 Identities=14% Similarity=0.336 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 106 PPSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 106 ~p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
.|..+.+++++++|++|++.||+.|.|..
T Consensus 208 ~~~~~~v~~~~~~L~~AkrPvI~~G~g~~ 236 (616)
T PRK07418 208 KGNPRQINAALKLIEEAERPLLYVGGGAI 236 (616)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 35678899999999999999999999985
No 269
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=28.73 E-value=72 Score=32.20 Aligned_cols=41 Identities=22% Similarity=0.173 Sum_probs=32.7
Q ss_pred hhCCeEEEEc--cCcchhhHHHHHHHHHhCCCeEEEEcCCCCC
Q 015613 332 KECDAFLVLG--SSLMTMSAYRLVRAAHEAGSTIAIVNVGETR 372 (403)
Q Consensus 332 ~~aDllLVVG--TSL~V~p~~~lv~~a~~~g~~liiIN~~~t~ 372 (403)
++.-.+|||| -|-++--..+|..+.++.+.+.++||+++..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv 59 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAV 59 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHH
Confidence 4455788887 3677777889999988889989999999853
No 270
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=28.72 E-value=2.9e+02 Score=24.63 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=37.7
Q ss_pred CCcHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEc
Q 015613 318 NVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN 367 (403)
Q Consensus 318 ~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN 367 (403)
.++.+.++++.+.+.++.-+.++|.+.....+..+......-|.....+.
T Consensus 14 ~l~~~~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~ 63 (179)
T TIGR03127 14 RIDEEELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVG 63 (179)
T ss_pred hCCHHHHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhCCCeEEEeC
Confidence 45666788888899999999999998776777667666666676666554
No 271
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=28.60 E-value=1.8e+02 Score=29.02 Aligned_cols=52 Identities=15% Similarity=0.133 Sum_probs=40.9
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEc-CCCCCCCCcccEEEE
Q 015613 331 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDLTTLKIS 382 (403)
Q Consensus 331 ~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN-~~~t~~d~~~~l~I~ 382 (403)
+.+-|++|++-.|-.+.-....++.+++.|+++|-|. ...++....+++.|.
T Consensus 125 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~aD~~I~ 177 (296)
T PRK12570 125 LTADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKIADIAIS 177 (296)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEe
Confidence 3578999999999999888899999999999977774 444556666777665
No 272
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=28.55 E-value=65 Score=34.77 Aligned_cols=28 Identities=14% Similarity=0.510 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
|..+.+++++++|.+|++.+|+.|.|+-
T Consensus 198 ~~~~~l~~~~~~L~~AkrPvIi~G~g~~ 225 (569)
T PRK09259 198 PAPEAVDRALDLLKKAKRPLIILGKGAA 225 (569)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECcCcc
Confidence 4567899999999999999999999985
No 273
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=28.55 E-value=1.5e+02 Score=28.26 Aligned_cols=54 Identities=9% Similarity=0.093 Sum_probs=42.6
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEEC
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISA 383 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~ 383 (403)
.+.+-|++|++-.|-.+.-....++.++++|+++|.| +...+++...+|+.|.-
T Consensus 44 ~~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~~d~~l~~ 98 (268)
T TIGR00393 44 MVEPNDVVLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSSLARAADYVLDI 98 (268)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCCcccccCCEEEEc
Confidence 4567899999988888888889999999999986655 55666777777776654
No 274
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=28.45 E-value=65 Score=34.87 Aligned_cols=28 Identities=18% Similarity=0.444 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
|..+.+++++++|.+|++.||++|.|..
T Consensus 185 ~~~~~v~~~~~~L~~AkrPvil~G~g~~ 212 (575)
T TIGR02720 185 PDVEAVTRAVQTLKAAERPVIYYGIGAR 212 (575)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECcchh
Confidence 5567899999999999999999999996
No 275
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=28.41 E-value=26 Score=29.58 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=9.2
Q ss_pred CcEEEEeCCCCCcc
Q 015613 123 AKLIVLTGAGISTE 136 (403)
Q Consensus 123 k~IVVlTGAGISts 136 (403)
++|++..|+|+||+
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 35677777777655
No 276
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=27.93 E-value=60 Score=35.35 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
|..+.+++++++|++|++.||+.|.|+.
T Consensus 193 ~~~~~i~~a~~~L~~AkrPvi~~G~g~~ 220 (597)
T PRK08273 193 PYDEDLRRAAEVLNAGRKVAILVGAGAL 220 (597)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECcchH
Confidence 4567899999999999999999999985
No 277
>PRK08329 threonine synthase; Validated
Probab=27.90 E-value=29 Score=35.19 Aligned_cols=11 Identities=27% Similarity=0.878 Sum_probs=9.3
Q ss_pred EEcCCCCcccc
Q 015613 232 VVCLDCGFSFC 242 (403)
Q Consensus 232 ~~C~~C~~~~~ 242 (403)
++|..|++.|+
T Consensus 2 l~C~~Cg~~~~ 12 (347)
T PRK08329 2 LRCTKCGRTYE 12 (347)
T ss_pred cCcCCCCCCcC
Confidence 58999998886
No 278
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=27.88 E-value=73 Score=34.04 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCCc
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGISt 135 (403)
+..+.+++++++|++|++.||+.|.|...
T Consensus 180 ~~~~~i~~~~~~l~~A~rPvi~~G~g~~~ 208 (539)
T TIGR02418 180 APDDAIDEVAEAIQNAKLPVLLLGLRASS 208 (539)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCCcCc
Confidence 44568999999999999999999999964
No 279
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=27.82 E-value=62 Score=37.47 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=22.2
Q ss_pred CCCCCCCCcccCcEEecCCCCc-HHHHHHHHHHHhhCC
Q 015613 299 PTCQKCNGVLKPDVVFFGDNVP-KDRADKAMEAAKECD 335 (403)
Q Consensus 299 P~Cp~Cgg~lrP~Vv~FgE~~p-~~~~~~a~~~~~~aD 335 (403)
.+||.||+...|.-... -.++ .+.+.+|.+.+..-+
T Consensus 638 ~rCP~CG~~Te~~~pc~-~~i~l~~~~~~A~~~lg~~~ 674 (1095)
T TIGR00354 638 LKCPVCGELTEQLYYGK-RKVDLRELYEEAIANLGEYK 674 (1095)
T ss_pred ccCCCCCCcccccccee-EEecHHHHHHHHHHHhCCCC
Confidence 57999999765544431 1333 456777877775443
No 280
>PRK06154 hypothetical protein; Provisional
Probab=27.81 E-value=72 Score=34.54 Aligned_cols=31 Identities=6% Similarity=0.179 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEeCCCCCcc
Q 015613 106 PPSIEDINQLYQFFDNSAKLIVLTGAGISTE 136 (403)
Q Consensus 106 ~p~~~~l~~l~~~l~~ak~IVVlTGAGISts 136 (403)
.|....+++++++|.+|++.+|+.|.|+..+
T Consensus 198 ~~~~~~i~~aa~~L~~A~rPvil~G~g~~~~ 228 (565)
T PRK06154 198 GADPVEVVEAAALLLAAERPVIYAGQGVLYA 228 (565)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 3556789999999999999999999999744
No 281
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=27.70 E-value=28 Score=33.10 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=11.7
Q ss_pred eEEcCCCCcccchhh
Q 015613 231 TVVCLDCGFSFCRDL 245 (403)
Q Consensus 231 ~~~C~~C~~~~~~~~ 245 (403)
..+|+.|++.+....
T Consensus 5 ~~~CPvC~~~F~~~~ 19 (214)
T PF09986_consen 5 KITCPVCGKEFKTKK 19 (214)
T ss_pred ceECCCCCCeeeeeE
Confidence 478999999886543
No 282
>PRK07586 hypothetical protein; Validated
Probab=27.40 E-value=72 Score=33.86 Aligned_cols=30 Identities=7% Similarity=0.066 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEeCCCCCc
Q 015613 106 PPSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (403)
Q Consensus 106 ~p~~~~l~~l~~~l~~ak~IVVlTGAGISt 135 (403)
.|..+.+++++++|.+|++-||+.|.|+..
T Consensus 181 ~~~~~~v~~~~~~L~~A~rPvi~~G~g~~~ 210 (514)
T PRK07586 181 AVDPAAVEAAAAALRSGEPTVLLLGGRALR 210 (514)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEeCCcccc
Confidence 355678999999999999999999999863
No 283
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=27.35 E-value=59 Score=38.94 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=20.9
Q ss_pred CCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCC
Q 015613 299 PTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECD 335 (403)
Q Consensus 299 P~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aD 335 (403)
.+||.||+.....-.---+--+.+.+.+|.+.+....
T Consensus 687 ~~Cp~CG~~~~~~~~~~~~i~~~~~~~~A~~~v~~~~ 723 (1627)
T PRK14715 687 HVCPFCGTRVELKPYARREIPPKDYWYAALENLKINK 723 (1627)
T ss_pred ccCcccCCcccCCCccceecCHHHHHHHHHHHhCCCC
Confidence 5799999863332221112223456778887775433
No 284
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=27.34 E-value=1.2e+02 Score=29.92 Aligned_cols=54 Identities=6% Similarity=-0.021 Sum_probs=42.3
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEEC
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISA 383 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~ 383 (403)
.+.+-|++|++-.|-.+....+.++.++++|+++|-| +...++....+|+.+.-
T Consensus 86 ~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~ 140 (321)
T PRK11543 86 MIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDI 140 (321)
T ss_pred ccCCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEc
Confidence 3467899999988888888889999999999997766 44556677777777643
No 285
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=27.14 E-value=1.1e+02 Score=34.74 Aligned_cols=50 Identities=6% Similarity=0.123 Sum_probs=33.4
Q ss_pred HhhCCeEEEEccCcch----------hhHHHHHHHHH---hC-CCeEEEEcCCCCCCCCc-ccEE
Q 015613 331 AKECDAFLVLGSSLMT----------MSAYRLVRAAH---EA-GSTIAIVNVGETRADDL-TTLK 380 (403)
Q Consensus 331 ~~~aDllLVVGTSL~V----------~p~~~lv~~a~---~~-g~~liiIN~~~t~~d~~-~~l~ 380 (403)
+..+|++|+.|+...+ .|....+..++ ++ |+++|.|++-.|..... +|..
T Consensus 208 ~~~a~~il~wG~Np~~s~~~~~~~~~~~~~~~~~~~~~~~~~ggaklIvIDPr~t~tA~~~ad~~ 272 (822)
T TIGR02164 208 LENSDTIVLWANDPVKNLQVGWNCETHESFAYLAQLKEKVAAGEINVISIDPVVTKTQAYLGCEH 272 (822)
T ss_pred HHhCCEEEEECCCHHHhcCcccccCCCchHHHHHHHHHHhhCCCceEEEECCCCCchhhhccCeE
Confidence 5789999999987642 35444443332 24 48999999998876553 3443
No 286
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=27.12 E-value=80 Score=26.25 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=26.4
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCC
Q 015613 333 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET 371 (403)
Q Consensus 333 ~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t 371 (403)
..|+|+..+.+ .++..+...+-++|..+|..|++.-
T Consensus 59 ~~dvvVE~t~~---~~~~~~~~~~L~~G~~VVt~nk~al 94 (117)
T PF03447_consen 59 DIDVVVECTSS---EAVAEYYEKALERGKHVVTANKGAL 94 (117)
T ss_dssp T-SEEEE-SSC---HHHHHHHHHHHHTTCEEEES-HHHH
T ss_pred CCCEEEECCCc---hHHHHHHHHHHHCCCeEEEECHHHh
Confidence 79999999544 5667777788889999999998754
No 287
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=27.12 E-value=73 Score=33.98 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=49.4
Q ss_pred CcEEecCCCCcHH---HHHHHHHHHhhCCeEEEEccCcchhhHHHHHH----------HHHhCCCeEEEEcCCCCC----
Q 015613 310 PDVVFFGDNVPKD---RADKAMEAAKECDAFLVLGSSLMTMSAYRLVR----------AAHEAGSTIAIVNVGETR---- 372 (403)
Q Consensus 310 P~Vv~FgE~~p~~---~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~----------~a~~~g~~liiIN~~~t~---- 372 (403)
-||++=.-++|.+ .+|+..+.+.+.|+.||+|-.=.|.|+++--. ++. +-..+|+++++-.+
T Consensus 356 MNVLLAEa~VpYd~~~emdeiN~~f~~~Dv~lViGANDvVNPaA~~d~~SpI~GMPil~v~-~ak~Viv~Krsm~~Gyag 434 (463)
T PF02233_consen 356 MNVLLAEANVPYDIVKEMDEINPDFPDTDVVLVIGANDVVNPAAREDPNSPIYGMPILEVW-KAKQVIVIKRSMSPGYAG 434 (463)
T ss_dssp HHHHHHHCT--GGGEEEHHHHGGGGGG-SEEEEES-SGGG-CHHCCSTTSTTTTSS---GG-GSSEEEEEESSS--TTTS
T ss_pred ceEEEEecCCCHHHHhhhhhcccchhcCCEEEEeccccccCchhccCCCCCCCCCeecchh-hcCeEEEEEcCCCCCCCC
Confidence 3555544556655 36777788899999999999998988755411 111 12356666665432
Q ss_pred CCC-----cccEEEECcHHHHHHHHHHh
Q 015613 373 ADD-----LTTLKISARLGEILPRVLDV 395 (403)
Q Consensus 373 ~d~-----~~~l~I~~~~~evL~~L~~~ 395 (403)
.|+ ....-+-||+.+.+.+|.+.
T Consensus 435 v~NpLF~~~nt~MlfGDAk~~~~~l~~~ 462 (463)
T PF02233_consen 435 VDNPLFYKDNTRMLFGDAKKTLEELVAE 462 (463)
T ss_dssp -S-GGGGSTTEEEEES-HHHHHHHHHHH
T ss_pred CCCcceecCCcEEEeccHHHHHHHHHHh
Confidence 222 33455899999999998764
No 288
>PRK09462 fur ferric uptake regulator; Provisional
Probab=27.03 E-value=86 Score=27.59 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=33.3
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCCceeec--cceeeEEcCCCCcccch
Q 015613 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCR 243 (403)
Q Consensus 184 ~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~ielH--Gs~~~~~C~~C~~~~~~ 243 (403)
...+.-.|+.|..|++.|.+..+-..|--.. +++. +.-...+|..||+..+.
T Consensus 49 ~i~~aTVYR~L~~L~e~Gli~~~~~~~~~~~--------y~~~~~~~H~H~iC~~Cg~i~~i 102 (148)
T PRK09462 49 EIGLATVYRVLNQFDDAGIVTRHNFEGGKSV--------FELTQQHHHDHLICLDCGKVIEF 102 (148)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCCCcEE--------EEeCCCCCCCceEECCCCCEEEe
Confidence 3455678999999999998866554441111 2221 11235899999987653
No 289
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=26.82 E-value=51 Score=25.22 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=12.5
Q ss_pred eccceeeEEcCCCCcc
Q 015613 225 LHGTVYTVVCLDCGFS 240 (403)
Q Consensus 225 lHGs~~~~~C~~C~~~ 240 (403)
..+.+-.+.|.+|+..
T Consensus 5 p~S~F~~VkCp~C~n~ 20 (59)
T PRK00415 5 PRSRFLKVKCPDCGNE 20 (59)
T ss_pred CCCeEEEEECCCCCCe
Confidence 4567788999999964
No 290
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.80 E-value=70 Score=34.84 Aligned_cols=29 Identities=17% Similarity=0.447 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCCc
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGISt 135 (403)
+..+.+++++++|.+|++.||++|.|+..
T Consensus 197 ~~~~~l~~a~~~L~~A~rPvil~G~g~~~ 225 (595)
T PRK09107 197 GDAEAITEAVELLANAKRPVIYSGGGVIN 225 (595)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCcccc
Confidence 45678999999999999999999999853
No 291
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=26.80 E-value=3.6e+02 Score=22.71 Aligned_cols=36 Identities=28% Similarity=0.289 Sum_probs=23.8
Q ss_pred EEEEccCcchh-hHHHHHHHHHhCCCeEEEEcCCCCC
Q 015613 337 FLVLGSSLMTM-SAYRLVRAAHEAGSTIAIVNVGETR 372 (403)
Q Consensus 337 lLVVGTSL~V~-p~~~lv~~a~~~g~~liiIN~~~t~ 372 (403)
+-|||.|.+-. ....+++...+.|.+++-||+....
T Consensus 3 iAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~ 39 (116)
T PF13380_consen 3 IAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE 39 (116)
T ss_dssp EEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE
T ss_pred EEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE
Confidence 57899888754 3455556666778899999988643
No 292
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=26.42 E-value=74 Score=31.68 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=41.9
Q ss_pred CeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCC-CCCCcccEEEECcHHHHHHHHHHhCC
Q 015613 335 DAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVGS 397 (403)
Q Consensus 335 DllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t-~~d~~~~l~I~~~~~evL~~L~~~~~ 397 (403)
.|.|.||.|-.+.=.+.+ +...-++-||.++. +.-.-+|+.|.+|.=++.|+|.+++.
T Consensus 276 eLYiAvGisGAIQHLAGm-----KDSKvIvAINkDpdAPIFqvAD~GlvgDLfkiVPELtekL~ 334 (336)
T KOG3954|consen 276 ELYIAVGISGAIQHLAGM-----KDSKVIVAINKDPDAPIFQVADYGLVGDLFKIVPELTEKLP 334 (336)
T ss_pred ceEEEEeccHHHHHhhcC-----ccceEEEEecCCCCCCceeeecccchhhHHHHhHHHHHhcc
Confidence 477888887755422222 22334778999874 55667899999999999999998764
No 293
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=26.26 E-value=1e+02 Score=31.00 Aligned_cols=56 Identities=9% Similarity=0.072 Sum_probs=41.0
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEECcHH
Q 015613 331 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISARLG 386 (403)
Q Consensus 331 ~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~~~~ 386 (403)
+.+.|++|.+--|-.+.-....++.++++|+++|-| |...+++...+|+.|.-.++
T Consensus 90 ~~~~~lvI~iS~SGeT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~ag 146 (340)
T PRK11382 90 LDDRCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQAD 146 (340)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeCCC
Confidence 457789999866666666777788888889886655 77777777777777655543
No 294
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=26.24 E-value=1.9e+02 Score=26.44 Aligned_cols=23 Identities=4% Similarity=0.122 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCC
Q 015613 112 INQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 112 l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
-+.++++|++|++-+|+.|.|+.
T Consensus 17 p~~aa~lLk~AKRPvIivG~ga~ 39 (162)
T TIGR00315 17 PKLVAMMIKRAKRPLLIVGPENL 39 (162)
T ss_pred HHHHHHHHHcCCCcEEEECCCcC
Confidence 36888899999999999999875
No 295
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=26.15 E-value=74 Score=34.73 Aligned_cols=29 Identities=14% Similarity=0.370 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCCc
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGISt 135 (403)
|..+.+++++++|.+|++.||+.|.|+..
T Consensus 216 p~~~~i~~~~~~L~~AkrPlIl~G~g~~~ 244 (612)
T PRK07789 216 PHGKQIREAAKLIAAARRPVLYVGGGVIR 244 (612)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 45678999999999999999999999953
No 296
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.05 E-value=71 Score=34.69 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCCc
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGISt 135 (403)
+..+.+++++++|++|++.||+.|.|+..
T Consensus 206 ~~~~~i~~~~~~L~~AkrPvil~G~g~~~ 234 (587)
T PRK06965 206 GHSGQIRKAVSLLLSAKRPYIYTGGGVIL 234 (587)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 34678999999999999999999999963
No 297
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=25.92 E-value=29 Score=27.47 Aligned_cols=10 Identities=20% Similarity=0.544 Sum_probs=4.2
Q ss_pred CCCCCCCCCc
Q 015613 298 IPTCQKCNGV 307 (403)
Q Consensus 298 iP~Cp~Cgg~ 307 (403)
.+.||.|+.+
T Consensus 30 ~a~CPdC~~~ 39 (70)
T PF07191_consen 30 EAFCPDCGQP 39 (70)
T ss_dssp EEE-TTT-SB
T ss_pred cccCCCcccH
Confidence 3456666654
No 298
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=25.82 E-value=1.5e+02 Score=29.39 Aligned_cols=54 Identities=7% Similarity=0.101 Sum_probs=42.4
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEEC
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISA 383 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~ 383 (403)
.+.+.|++|++-.|-.+....+.+..++++|+++|.| +...+++...+|+.|.-
T Consensus 91 ~~~~~d~~I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l~~ 145 (326)
T PRK10892 91 MVTPQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMARAADIHLCV 145 (326)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCcccccCCEEEEe
Confidence 4567899999988888888899999999999997766 44456677777776643
No 299
>PRK08617 acetolactate synthase; Reviewed
Probab=25.71 E-value=80 Score=33.88 Aligned_cols=28 Identities=36% Similarity=0.421 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
+..+.+++++++|++|++.+|+.|.|..
T Consensus 186 ~~~~~i~~~~~~L~~AkrPvi~~G~g~~ 213 (552)
T PRK08617 186 ASPEDINYLAELIKNAKLPVLLLGMRAS 213 (552)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 3456899999999999999999999975
No 300
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=25.66 E-value=1.2e+02 Score=31.66 Aligned_cols=73 Identities=21% Similarity=0.190 Sum_probs=46.7
Q ss_pred cCcEEecCCCCcHHHH--HHHHHHHh--hCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEEC
Q 015613 309 KPDVVFFGDNVPKDRA--DKAMEAAK--ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISA 383 (403)
Q Consensus 309 rP~Vv~FgE~~p~~~~--~~a~~~~~--~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~ 383 (403)
-|.-+-|-+.+|...- ..+.+.++ ++|..||+|+-+--+--...+.+.. ..|+|.|++-+++....+|+.|-+
T Consensus 306 Ypf~vdF~rG~prynPgE~s~vdlL~~k~vDAalvi~sDp~ah~P~~~~~~l~--eIPvI~iDp~~~pTt~vadVviP~ 382 (429)
T COG1029 306 YPFAVDFSRGYPRYNPGEFSAVDLLKRKEVDAALVIASDPGAHFPRDAVEHLA--EIPVICIDPHPTPTTEVADVVIPS 382 (429)
T ss_pred CceeeecccCCcCCCcccccHHHHHhccCCCeEEEEecCccccChHHHHHHhh--cCCEEEecCCCCcchhhcceeccc
Confidence 3555667666664321 12444444 7999999998654433334444444 689999999998887777766543
No 301
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.61 E-value=71 Score=34.51 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCCcc
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGISTE 136 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGISts 136 (403)
+..+.+++++++|.+|++.||+.|.|+..+
T Consensus 191 ~~~~~i~~a~~~L~~A~rPvi~~G~g~~~~ 220 (574)
T PRK07979 191 GHKGQIKRALQTLVAAKKPVVYVGGGAINA 220 (574)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCCcccc
Confidence 346789999999999999999999999644
No 302
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=25.54 E-value=33 Score=27.04 Aligned_cols=13 Identities=46% Similarity=0.894 Sum_probs=8.8
Q ss_pred cEEEEeCCCCCcc
Q 015613 124 KLIVLTGAGISTE 136 (403)
Q Consensus 124 ~IVVlTGAGISts 136 (403)
+|++..|+|+|++
T Consensus 1 kIlvvC~~Gi~TS 13 (90)
T PF02302_consen 1 KILVVCGSGIGTS 13 (90)
T ss_dssp EEEEEESSSSHHH
T ss_pred CEEEECCChHHHH
Confidence 4667777777765
No 303
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=25.46 E-value=76 Score=28.50 Aligned_cols=41 Identities=22% Similarity=0.438 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHcCCcEEEEeCCCCCccC---------CCCCcCCCC
Q 015613 105 DPPSIEDINQLYQFFDNSAKLIVLTGAGISTEC---------GIPDYRSPN 146 (403)
Q Consensus 105 ~~p~~~~l~~l~~~l~~ak~IVVlTGAGIStsS---------GIPdFRs~~ 146 (403)
|..++..+.++++... +.++||+-||-=.-+| |=|+|.++=
T Consensus 51 DLEnQ~Rvk~~aEk~g-~eNvvVllGaaeaEaaglaAETVt~GDPTfAGPL 100 (154)
T PRK13265 51 DLENQKRVKDLAEKFG-AENVVVILGAAEAEAAGLAAETVTNGDPTFAGPL 100 (154)
T ss_pred chHHHHHHHHHHHhcC-CccEEEEecccchhhccceeeeeccCCCcccccc
Confidence 3344556777777665 6677777775443334 559999884
No 304
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=25.36 E-value=18 Score=32.84 Aligned_cols=53 Identities=21% Similarity=0.202 Sum_probs=33.3
Q ss_pred HHHHHHHHHHH----hCCCceEEeccccchHHHhCCCc--eeeccceeeEEcCCCCcccc
Q 015613 189 PAHFALASLEK----AGRIDCMITQNVDRLHHRAGSNP--LELHGTVYTVVCLDCGFSFC 242 (403)
Q Consensus 189 ~~H~~La~L~~----~gkl~~ViTQNIDgLh~rAG~~~--ielHGs~~~~~C~~C~~~~~ 242 (403)
.+|+-+-.+-. .|+....+-+.||||--..-... -...|.-+..+|. |++.|.
T Consensus 69 LaHl~ly~~~gr~~phg~ewk~lm~qV~~l~~~~~h~~~~~~v~~~~~~Y~C~-C~q~~l 127 (156)
T COG3091 69 LAHLHLYQEFGRYKPHGKEWKLLMQQVLGLRFCRTHQFEVQSVRRTTYPYRCQ-CQQHYL 127 (156)
T ss_pred HHHHHHHHHcCCCCCCchhHHHHHHHhCCCCCCccchHHHhhccccceeEEee-cCCccc
Confidence 35666655543 24455567778888764442222 4456788889999 998764
No 305
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=25.34 E-value=25 Score=23.80 Aligned_cols=14 Identities=29% Similarity=0.776 Sum_probs=6.3
Q ss_pred CCCCCCCcccCcEE
Q 015613 300 TCQKCNGVLKPDVV 313 (403)
Q Consensus 300 ~Cp~Cgg~lrP~Vv 313 (403)
.||.||+.|.-.|.
T Consensus 2 fC~~CG~~l~~~ip 15 (34)
T PF14803_consen 2 FCPQCGGPLERRIP 15 (34)
T ss_dssp B-TTT--B-EEE--
T ss_pred ccccccChhhhhcC
Confidence 49999999876655
No 306
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=25.18 E-value=1.9e+02 Score=23.74 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=43.4
Q ss_pred cEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhC---CCeEEEEcCCCCCCC--CcccEEEECcH
Q 015613 311 DVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEA---GSTIAIVNVGETRAD--DLTTLKISARL 385 (403)
Q Consensus 311 ~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~---g~~liiIN~~~t~~d--~~~~l~I~~~~ 385 (403)
.+++.+...+.+.+..+... .+.|++.+=.+........+.+...++. +.++++-....+..+ ..+|+.+.|.-
T Consensus 29 ~v~~l~~~~~~~~~~~~i~~-~~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvGG~~~t~~~~~~~~d~~~~Ge~ 107 (125)
T cd02065 29 EVIDLGVDVPPEEIVEAAKE-EDADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVGGAHPTADPEEPKVDAVVIGEG 107 (125)
T ss_pred EEEEcCCCCCHHHHHHHHHH-cCCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEeCCcCCccccccccceeeeCCe
Confidence 45666777775544333222 5677655543333333344544444332 344444443333322 24678888877
Q ss_pred HHHHHHHHH
Q 015613 386 GEILPRVLD 394 (403)
Q Consensus 386 ~evL~~L~~ 394 (403)
...++++++
T Consensus 108 e~~~~~l~~ 116 (125)
T cd02065 108 EYAGPALLE 116 (125)
T ss_pred EEEccccch
Confidence 777777654
No 307
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=25.13 E-value=77 Score=34.26 Aligned_cols=29 Identities=24% Similarity=0.507 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCCc
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGISt 135 (403)
|....+++++++|.+|++.||+.|.|+..
T Consensus 195 ~~~~~i~~~~~~L~~A~rPvil~G~g~~~ 223 (566)
T PRK07282 195 PNDMQIKKILKQLSKAKKPVILAGGGINY 223 (566)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCcCc
Confidence 44678999999999999999999999953
No 308
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=25.00 E-value=89 Score=30.02 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=13.3
Q ss_pred ccCCCCHHHHHHHHHHHhCCC
Q 015613 183 MAAQPNPAHFALASLEKAGRI 203 (403)
Q Consensus 183 ~~a~Pn~~H~~La~L~~~gkl 203 (403)
...+|+..-..|.++++.|.+
T Consensus 132 k~L~ks~iE~lLqkf~q~gwf 152 (235)
T KOG4718|consen 132 KPLKKSRIEELLQKFIQMGWF 152 (235)
T ss_pred CCCCHHHHHHHHHHHHHhchh
Confidence 445666666677777766544
No 309
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.96 E-value=24 Score=32.08 Aligned_cols=10 Identities=30% Similarity=0.803 Sum_probs=6.5
Q ss_pred eEEcCCCCcc
Q 015613 231 TVVCLDCGFS 240 (403)
Q Consensus 231 ~~~C~~C~~~ 240 (403)
...|.+||..
T Consensus 28 ~~fC~kCG~~ 37 (158)
T PF10083_consen 28 EKFCSKCGAK 37 (158)
T ss_pred HHHHHHhhHH
Confidence 3468888853
No 310
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=24.92 E-value=77 Score=34.31 Aligned_cols=29 Identities=10% Similarity=0.313 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCCc
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGISt 135 (403)
+....+++++++|.+|++.+|++|.|...
T Consensus 181 ~~~~~i~~~~~~L~~A~rP~i~~G~g~~~ 209 (579)
T TIGR03457 181 GGATSLAQAARLLAEAKFPVIISGGGVVM 209 (579)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECcCccc
Confidence 34567999999999999999999999864
No 311
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=24.81 E-value=33 Score=24.56 Aligned_cols=10 Identities=20% Similarity=0.793 Sum_probs=7.9
Q ss_pred CCCCCCCccc
Q 015613 300 TCQKCNGVLK 309 (403)
Q Consensus 300 ~Cp~Cgg~lr 309 (403)
+||.||+.++
T Consensus 1 ~CP~Cg~~a~ 10 (47)
T PF04606_consen 1 RCPHCGSKAR 10 (47)
T ss_pred CcCCCCCeeE
Confidence 5999998764
No 312
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=24.77 E-value=67 Score=29.35 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=26.2
Q ss_pred HHHHH---hhCCeEEEEccCcchhhHHHHHHHHH-hCCCeEEEEcCC
Q 015613 327 AMEAA---KECDAFLVLGSSLMTMSAYRLVRAAH-EAGSTIAIVNVG 369 (403)
Q Consensus 327 a~~~~---~~aDllLVVGTSL~V~p~~~lv~~a~-~~g~~liiIN~~ 369 (403)
+.+.+ .++||+|.+|+.. |-..+++...+ -...+.|.|+..
T Consensus 91 ~~e~~~g~g~~DlvlfvG~~~--y~~~~~ls~lk~f~~~~~i~l~~~ 135 (162)
T TIGR00315 91 SWEGFDGEGNYDLVLFLGIIY--YYLSQMLSSLKHFSHIVTIAIDKY 135 (162)
T ss_pred hhhhccCCCCcCEEEEeCCcc--hHHHHHHHHHHhhcCcEEEEecCC
Confidence 34455 6899999999998 54555554332 225666666633
No 313
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.74 E-value=84 Score=34.08 Aligned_cols=30 Identities=10% Similarity=0.342 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCCcc
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGISTE 136 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGISts 136 (403)
|..+.+++++++|++|++.||+.|.|...+
T Consensus 199 ~~~~~~~~~~~~L~~A~rPvIl~G~g~~~~ 228 (570)
T PRK06725 199 PDSMKLREVAKAISKAKRPLLYIGGGVIHS 228 (570)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCcccc
Confidence 445789999999999999999999999543
No 314
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=24.67 E-value=46 Score=29.22 Aligned_cols=16 Identities=31% Similarity=0.727 Sum_probs=12.0
Q ss_pred ceeeEEcCCCCcccch
Q 015613 228 TVYTVVCLDCGFSFCR 243 (403)
Q Consensus 228 s~~~~~C~~C~~~~~~ 243 (403)
.-+...|..|+..+.+
T Consensus 120 ~~~~~~C~~C~~~~~r 135 (157)
T PF10263_consen 120 KKYVYRCPSCGREYKR 135 (157)
T ss_pred cceEEEcCCCCCEeee
Confidence 4567899999987643
No 315
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=24.64 E-value=77 Score=34.51 Aligned_cols=29 Identities=10% Similarity=0.425 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCCc
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGISt 135 (403)
+..+.+++++++|.+|++.||++|.|+..
T Consensus 187 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~~ 215 (588)
T TIGR01504 187 ATRAQIEKAVEMLNAAERPLIVAGGGVIN 215 (588)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCcch
Confidence 34578999999999999999999999874
No 316
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.63 E-value=1.9e+02 Score=23.51 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=29.0
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHH-HHHHhCCCeEEEEc
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLV-RAAHEAGSTIAIVN 367 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv-~~a~~~g~~liiIN 367 (403)
.....+.++|+||++ |...-+-+...+ ..+++.|.|++..+
T Consensus 41 ~l~~~i~~aD~VIv~-t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 41 RLPSKIKKADLVIVF-TDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHHhcCCCCEEEEE-eCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 345678899999888 444445554544 45777899998887
No 317
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=24.45 E-value=44 Score=40.50 Aligned_cols=13 Identities=46% Similarity=0.810 Sum_probs=10.2
Q ss_pred CCCCCCCcccCcE
Q 015613 300 TCQKCNGVLKPDV 312 (403)
Q Consensus 300 ~Cp~Cgg~lrP~V 312 (403)
.||+||..|+-+=
T Consensus 935 ~Cp~Cg~~~~kdg 947 (1437)
T PRK00448 935 DCPKCGTKLKKDG 947 (1437)
T ss_pred cCccccccccccC
Confidence 6999998877543
No 318
>PRK07064 hypothetical protein; Provisional
Probab=24.38 E-value=84 Score=33.57 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
|..+.+++++++|.+|++.||++|.|+.
T Consensus 188 ~~~~~i~~~~~~l~~AkrPvi~~G~g~~ 215 (544)
T PRK07064 188 PDAAAVAELAERLAAARRPLLWLGGGAR 215 (544)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCChH
Confidence 5567899999999999999999999984
No 319
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=24.37 E-value=1.2e+02 Score=34.41 Aligned_cols=59 Identities=10% Similarity=0.172 Sum_probs=36.7
Q ss_pred HhhCCeEEEEccCcch----------hhHHHHHHH---HHhC-CCeEEEEcCCCCCCCCcc---cEEEECcHHHHH
Q 015613 331 AKECDAFLVLGSSLMT----------MSAYRLVRA---AHEA-GSTIAIVNVGETRADDLT---TLKISARLGEIL 389 (403)
Q Consensus 331 ~~~aDllLVVGTSL~V----------~p~~~lv~~---a~~~-g~~liiIN~~~t~~d~~~---~l~I~~~~~evL 389 (403)
+..+|++|+.|+.... .|...++.. +.++ |+++|.|++-.|..-..+ .+.|+-..+-+|
T Consensus 211 ~~~a~~ii~wG~Np~~s~~~~~~~~~~p~~~~~~~~~~~~~~~gaklIvIDPr~t~tA~~a~~~~l~irPGTD~AL 286 (825)
T PRK15102 211 LENSKTIVLWGSDPVKNLQVGWNCETHESYAYLAQLKEKVAKGEINVISIDPVVTKTQNYLGCEHLYVNPQTDVPL 286 (825)
T ss_pred HHhCCEEEEECCChHHhccCccccCCCcHHHHHHHHHHHhhcCCCEEEEECCCCCchhhhccCceecccCCcHHHH
Confidence 5789999999987532 444444332 2233 699999999988765431 244554444333
No 320
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=24.30 E-value=73 Score=26.38 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=33.1
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCCceeec--cceeeEEcCCCCcccc
Q 015613 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFC 242 (403)
Q Consensus 184 ~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~ielH--Gs~~~~~C~~C~~~~~ 242 (403)
...++..|+.|..|++.|.+..+-..| + ...+++. ..-...+|.+||+..+
T Consensus 32 ~i~~~TVYR~L~~L~~~Gli~~~~~~~--~------~~~y~~~~~~~h~H~~C~~Cg~i~~ 84 (116)
T cd07153 32 SISLATVYRTLELLEEAGLVREIELGD--G------KARYELNTDEHHHHLICTKCGKVID 84 (116)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeCC--C------ceEEEeCCCCCCCceEeCCCCCEEE
Confidence 345667899999999999887654433 1 0112221 2234589999998765
No 321
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=24.26 E-value=2.4e+02 Score=28.07 Aligned_cols=56 Identities=29% Similarity=0.444 Sum_probs=43.5
Q ss_pred EEecCCCCcHHHHHHHHHHHhhC-CeEEE--EccCcchhhHHHHHHHHHhCCCeEEEEc
Q 015613 312 VVFFGDNVPKDRADKAMEAAKEC-DAFLV--LGSSLMTMSAYRLVRAAHEAGSTIAIVN 367 (403)
Q Consensus 312 Vv~FgE~~p~~~~~~a~~~~~~a-DllLV--VGTSL~V~p~~~lv~~a~~~g~~liiIN 367 (403)
.+-+.|....+......+.++.- ++-|| -||....-|.++||+.+++.|.+++.|+
T Consensus 55 ~is~h~hne~~~~~~li~~l~~g~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lP 113 (275)
T COG0313 55 LISYHEHNEKEKLPKLIPLLKKGKSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLP 113 (275)
T ss_pred eecccCCcHHHHHHHHHHHHhcCCeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecC
Confidence 55567777776667777777754 55444 3999999999999999999999988775
No 322
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=23.99 E-value=27 Score=23.62 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=10.4
Q ss_pred CCCCCCCcccCcE
Q 015613 300 TCQKCNGVLKPDV 312 (403)
Q Consensus 300 ~Cp~Cgg~lrP~V 312 (403)
-||.||..|.|.-
T Consensus 3 FCp~C~nlL~p~~ 15 (35)
T PF02150_consen 3 FCPECGNLLYPKE 15 (35)
T ss_dssp BETTTTSBEEEEE
T ss_pred eCCCCCccceEcC
Confidence 4999999987753
No 323
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=23.94 E-value=33 Score=22.62 Aligned_cols=10 Identities=30% Similarity=1.002 Sum_probs=3.5
Q ss_pred CCCCCCCCCc
Q 015613 298 IPTCQKCNGV 307 (403)
Q Consensus 298 iP~Cp~Cgg~ 307 (403)
+|+||.|+..
T Consensus 2 ~p~Cp~C~se 11 (30)
T PF08274_consen 2 LPKCPLCGSE 11 (30)
T ss_dssp S---TTT---
T ss_pred CCCCCCCCCc
Confidence 5889999863
No 324
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=23.90 E-value=44 Score=28.33 Aligned_cols=10 Identities=20% Similarity=0.654 Sum_probs=4.8
Q ss_pred hCCCeEEEEc
Q 015613 358 EAGSTIAIVN 367 (403)
Q Consensus 358 ~~g~~liiIN 367 (403)
..|.|+..||
T Consensus 71 ~~giPV~vI~ 80 (102)
T COG1440 71 EKGIPVEVID 80 (102)
T ss_pred ccCCCeEEeC
Confidence 3444555554
No 325
>COG1933 Archaeal DNA polymerase II, large subunit [DNA replication, recombination, and repair]
Probab=23.85 E-value=30 Score=33.66 Aligned_cols=10 Identities=30% Similarity=0.684 Sum_probs=8.1
Q ss_pred CCCCCCCCCC
Q 015613 297 HIPTCQKCNG 306 (403)
Q Consensus 297 ~iP~Cp~Cgg 306 (403)
..-+|++|||
T Consensus 182 l~g~c~kcg~ 191 (253)
T COG1933 182 LDGKCPICGG 191 (253)
T ss_pred ccccccccCC
Confidence 3457999999
No 326
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=23.69 E-value=90 Score=33.44 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
|..+.+++++++|++|++.||+.|.|+.
T Consensus 181 ~~~~~l~~~~~~L~~AkrPvIl~G~g~~ 208 (548)
T PRK08978 181 FPAAELEQARALLAQAKKPVLYVGGGVG 208 (548)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 4567899999999999999999999985
No 327
>PLN02929 NADH kinase
Probab=23.67 E-value=96 Score=31.23 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=39.6
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC----------------cccEEEECcHHHHHHHHH
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD----------------LTTLKISARLGEILPRVL 393 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~----------------~~~l~I~~~~~evL~~L~ 393 (403)
....+|+++++|---.+.-+++.+ ..+.|++=||.+++..++ .+++. .+++.++|.+++
T Consensus 61 ~~~~~Dlvi~lGGDGT~L~aa~~~----~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~-~~~~~~~L~~il 135 (301)
T PLN02929 61 PIRDVDLVVAVGGDGTLLQASHFL----DDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAAT-AEDFEQVLDDVL 135 (301)
T ss_pred ccCCCCEEEEECCcHHHHHHHHHc----CCCCcEEEEECCCcccccccccccccccccCccccccCC-HHHHHHHHHHHH
Confidence 346789999999766665555554 357899999999753222 22333 245677777776
Q ss_pred H
Q 015613 394 D 394 (403)
Q Consensus 394 ~ 394 (403)
+
T Consensus 136 ~ 136 (301)
T PLN02929 136 F 136 (301)
T ss_pred c
Confidence 5
No 328
>PRK11269 glyoxylate carboligase; Provisional
Probab=23.51 E-value=82 Score=34.23 Aligned_cols=29 Identities=10% Similarity=0.438 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCCc
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGISt 135 (403)
|..+.+++++++|.+|++.+|+.|.|+..
T Consensus 188 ~~~~~i~~~~~~L~~AkrPvil~G~g~~~ 216 (591)
T PRK11269 188 ATRAQIEKALEMLNAAERPLIVAGGGVIN 216 (591)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCCcc
Confidence 45678999999999999999999999853
No 329
>PLN02470 acetolactate synthase
Probab=23.43 E-value=80 Score=34.25 Aligned_cols=28 Identities=21% Similarity=0.477 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
|..+.+++++++|.+|++.||++|.|..
T Consensus 200 ~~~~~i~~~~~~L~~A~rPvI~~G~g~~ 227 (585)
T PLN02470 200 PEKSQLEQIVRLISESKRPVVYVGGGCL 227 (585)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCChh
Confidence 4567899999999999999999999985
No 330
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=23.40 E-value=39 Score=27.77 Aligned_cols=13 Identities=38% Similarity=0.736 Sum_probs=8.8
Q ss_pred cEEEEeCCCCCcc
Q 015613 124 KLIVLTGAGISTE 136 (403)
Q Consensus 124 ~IVVlTGAGISts 136 (403)
+|++..|+|+|++
T Consensus 1 kIl~~Cg~G~sTS 13 (96)
T cd05564 1 KILLVCSAGMSTS 13 (96)
T ss_pred CEEEEcCCCchHH
Confidence 3677777777665
No 331
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=23.34 E-value=94 Score=33.60 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCCc
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGISt 135 (403)
|..+.+++++++|++|++.+|+.|.|...
T Consensus 205 ~~~~~~~~~~~~L~~AkrPvi~~G~g~~~ 233 (569)
T PRK08327 205 PDPEDIARAAEMLAAAERPVIITWRAGRT 233 (569)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecccCC
Confidence 45678999999999999999999999964
No 332
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=23.27 E-value=41 Score=25.51 Aligned_cols=12 Identities=33% Similarity=0.792 Sum_probs=9.2
Q ss_pred CCCCCCCCcccC
Q 015613 299 PTCQKCNGVLKP 310 (403)
Q Consensus 299 P~Cp~Cgg~lrP 310 (403)
-.||+|||.|-+
T Consensus 42 ~~CPNCgGelv~ 53 (57)
T PF06906_consen 42 GVCPNCGGELVR 53 (57)
T ss_pred CcCcCCCCcccc
Confidence 469999997643
No 333
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=23.25 E-value=70 Score=21.78 Aligned_cols=14 Identities=36% Similarity=1.066 Sum_probs=7.2
Q ss_pred ccccCCCCCCCCCC
Q 015613 292 WEEDFHIPTCQKCN 305 (403)
Q Consensus 292 ~~~~~~iP~Cp~Cg 305 (403)
+...+..+.|.+|.
T Consensus 18 L~~~F~~~VCD~CR 31 (34)
T PF01286_consen 18 LLNNFDLPVCDKCR 31 (34)
T ss_dssp CCCCTS-S--TTT-
T ss_pred HHHhCCcccccccc
Confidence 34567888999985
No 334
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=23.22 E-value=83 Score=34.01 Aligned_cols=28 Identities=14% Similarity=0.474 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
|....+++++++|.+|++.||++|.|+.
T Consensus 198 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 225 (578)
T PRK06112 198 PAPQRLAEAASLLAQAQRPVVVAGGGVH 225 (578)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCcc
Confidence 4457899999999999999999999975
No 335
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.19 E-value=89 Score=33.68 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCCcc
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGISTE 136 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGISts 136 (403)
+..+.+++++++|.+|++.+|++|.|...+
T Consensus 188 ~~~~~i~~~~~~L~~A~rPviv~G~g~~~~ 217 (563)
T PRK08527 188 GNSRQIKKAAEAIKEAKKPLFYLGGGAILS 217 (563)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCCcccc
Confidence 346789999999999999999999999643
No 336
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=23.09 E-value=29 Score=22.71 Aligned_cols=13 Identities=31% Similarity=0.767 Sum_probs=7.0
Q ss_pred CCCCCCCCcccCc
Q 015613 299 PTCQKCNGVLKPD 311 (403)
Q Consensus 299 P~Cp~Cgg~lrP~ 311 (403)
..|+.||+++++.
T Consensus 4 rfC~~CG~~t~~~ 16 (32)
T PF09297_consen 4 RFCGRCGAPTKPA 16 (32)
T ss_dssp SB-TTT--BEEE-
T ss_pred cccCcCCccccCC
Confidence 4699999987754
No 337
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=23.07 E-value=41 Score=25.20 Aligned_cols=12 Identities=25% Similarity=0.825 Sum_probs=8.9
Q ss_pred CCCCCCCCCccc
Q 015613 298 IPTCQKCNGVLK 309 (403)
Q Consensus 298 iP~Cp~Cgg~lr 309 (403)
+-.||.||..+.
T Consensus 22 iV~Cp~CGaele 33 (54)
T TIGR01206 22 LVICDECGAELE 33 (54)
T ss_pred EEeCCCCCCEEE
Confidence 457999998543
No 338
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=23.01 E-value=94 Score=33.18 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
|..+.+++++++|++|++.||+.|.|..
T Consensus 191 ~~~~~~~~~~~~L~~AkrPvIl~G~g~~ 218 (530)
T PRK07092 191 PDPAALARLGDALDAARRPALVVGPAVD 218 (530)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCcc
Confidence 4567899999999999999999999985
No 339
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.98 E-value=87 Score=33.86 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 108 SIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 108 ~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
..+.+++++++|.+|++.||++|.|..
T Consensus 192 ~~~~i~~~~~~L~~A~rPvil~G~g~~ 218 (572)
T PRK08979 192 HKGQIKRGLQALLAAKKPVLYVGGGAI 218 (572)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 457899999999999999999999985
No 340
>PRK14991 tetrathionate reductase subunit A; Provisional
Probab=22.60 E-value=1.6e+02 Score=34.67 Aligned_cols=45 Identities=16% Similarity=0.103 Sum_probs=32.5
Q ss_pred HHHhhCCeEEEEccCcch--hhHH---HHHHHHHhCC-CeEEEEcCCCCCC
Q 015613 329 EAAKECDAFLVLGSSLMT--MSAY---RLVRAAHEAG-STIAIVNVGETRA 373 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V--~p~~---~lv~~a~~~g-~~liiIN~~~t~~ 373 (403)
..+..++++|++|++-.. .|+. +.+..++++| .++|+|++-.|..
T Consensus 281 ~D~~~a~~il~~G~Np~~s~~~~~~~~~~l~~ar~~gg~k~VVVDPr~t~t 331 (1031)
T PRK14991 281 PDWDNVEFALFIGTSPAQSGNPFKRQARQLANARTRGNFEYVVVAPALPLS 331 (1031)
T ss_pred chhhcCcEEEEeCcChhHhCCchHHHHHHHHHHHHcCCCEEEEECCCCCCc
Confidence 356789999999997654 3433 3344566665 8999999888763
No 341
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=22.20 E-value=1.4e+02 Score=31.21 Aligned_cols=86 Identities=17% Similarity=0.177 Sum_probs=54.6
Q ss_pred cCcEEecCCCCcHHH---HHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhC--------CCeEEEEcCCC-----CC
Q 015613 309 KPDVVFFGDNVPKDR---ADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEA--------GSTIAIVNVGE-----TR 372 (403)
Q Consensus 309 rP~Vv~FgE~~p~~~---~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~--------g~~liiIN~~~-----t~ 372 (403)
.-||++=.-++|.+. +++..+.+.++|++||+|..-.|.|+++-= ...=. .++.+++++.. .-
T Consensus 356 HMNVLLAEA~VpYd~v~emddIN~dF~~tDVvlVIGANDvvNPAA~~D-~SPI~GMPiLeV~KAk~viv~KRsM~sGyAG 434 (463)
T COG1282 356 HMNVLLAEAKVPYDIVLEMDEINDDFADTDVVLVIGANDVVNPAAQDD-NSPIAGMPVLEVWKAKTVIVFKRSMNSGYAG 434 (463)
T ss_pred chhhhhhhccCCHHHHhhHHhhcchhccccEEEEEccCCCCChhhccC-CCCcCCCceeeeeccceEEEEeccccccccc
Confidence 346777666788663 456667888999999999999998876531 10001 23445554332 22
Q ss_pred CCC-----cccEEEECcHHHHHHHHHHh
Q 015613 373 ADD-----LTTLKISARLGEILPRVLDV 395 (403)
Q Consensus 373 ~d~-----~~~l~I~~~~~evL~~L~~~ 395 (403)
.++ ....-+-||+.+...++++.
T Consensus 435 v~N~LFy~d~T~MlFGDAKk~V~~i~k~ 462 (463)
T COG1282 435 VQNPLFYKDNTMMLFGDAKKSVDEILKA 462 (463)
T ss_pred cCCcceeccCcEEEeccHHHHHHHHHhc
Confidence 233 22344789999999888764
No 342
>PRK08322 acetolactate synthase; Reviewed
Probab=22.16 E-value=1.1e+02 Score=32.80 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
|..+.+++++++|++|++.||++|.|..
T Consensus 181 ~~~~~i~~~~~~l~~A~rPviv~G~g~~ 208 (547)
T PRK08322 181 ASPKAIERAAEAIQAAKNPLILIGAGAN 208 (547)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 4467899999999999999999999985
No 343
>PRK12474 hypothetical protein; Provisional
Probab=21.89 E-value=96 Score=33.06 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
|..+.+++++++|.+|++-||+.|.|..
T Consensus 186 ~~~~~i~~~~~~L~~A~rPvil~G~g~~ 213 (518)
T PRK12474 186 VAAETVERIAALLRNGKKSALLLRGSAL 213 (518)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCccc
Confidence 4567899999999999999999999985
No 344
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=21.88 E-value=2.2e+02 Score=31.35 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=43.4
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEEC
Q 015613 329 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISA 383 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~ 383 (403)
..+.+-|++|++--|-.+.-..++++.++++|+++|.|=-..+++...+|+.|.-
T Consensus 511 ~~l~~~DvvI~iS~sG~t~e~i~~~~~Ak~~Ga~vIaIT~~~spLa~~aD~~L~~ 565 (638)
T PRK14101 511 ALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLAKRATVALET 565 (638)
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEcCCCChhHhhCCEEEEc
Confidence 3456789999999888888888999999999999888865555565667776643
No 345
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=21.77 E-value=48 Score=30.80 Aligned_cols=11 Identities=45% Similarity=0.806 Sum_probs=8.9
Q ss_pred CCCCCCCCccc
Q 015613 299 PTCQKCNGVLK 309 (403)
Q Consensus 299 P~Cp~Cgg~lr 309 (403)
-.||.||+.|.
T Consensus 133 F~Cp~Cg~~L~ 143 (176)
T COG1675 133 FTCPKCGEDLE 143 (176)
T ss_pred CCCCCCCchhh
Confidence 56999998764
No 346
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=21.77 E-value=6.4e+02 Score=23.25 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=35.2
Q ss_pred CcEEecCCCCcHHHHHH-HHHHH-hhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCC
Q 015613 310 PDVVFFGDNVPKDRADK-AMEAA-KECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGE 370 (403)
Q Consensus 310 P~Vv~FgE~~p~~~~~~-a~~~~-~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~ 370 (403)
.+++++....+.+.... ....+ +++|.+|+.+++.... ...+..+.+.|.|+|.+|...
T Consensus 35 ~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~--~~~l~~~~~~~iPvv~~~~~~ 95 (272)
T cd06300 35 SEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTAL--NPVIEEACEAGIPVVSFDGTV 95 (272)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhh--HHHHHHHHHCCCeEEEEecCC
Confidence 45666655544333323 33333 3899999988754322 234455667799999999654
No 347
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=21.60 E-value=1.1e+02 Score=32.98 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
|..+.+++++++|.+|++.||++|.|+-
T Consensus 192 ~~~~~~~~~~~~L~~A~rPvil~G~g~~ 219 (572)
T PRK06456 192 IDRLALKKAAEILINAERPIILVGTGVV 219 (572)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCCc
Confidence 3457899999999999999999999995
No 348
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.44 E-value=5.3e+02 Score=23.77 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=25.5
Q ss_pred hCCeEEEEccCcchh-hHHHHHHHHHhCCCeEEEEcCCC
Q 015613 333 ECDAFLVLGSSLMTM-SAYRLVRAAHEAGSTIAIVNVGE 370 (403)
Q Consensus 333 ~aDllLVVGTSL~V~-p~~~lv~~a~~~g~~liiIN~~~ 370 (403)
..|.+|++++..... .....+..+.+.|.|+|.||...
T Consensus 55 ~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i~~~~ 93 (273)
T cd06292 55 GVRGVVFISSLHADTHADHSHYERLAERGLPVVLVNGRA 93 (273)
T ss_pred CCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEEcCCC
Confidence 689999998754322 12334455566799999998653
No 349
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=21.40 E-value=1.1e+02 Score=32.91 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
|..+.+++++++|.+|++.||+.|.|..
T Consensus 189 ~~~~~i~~~~~~L~~A~rPvi~~G~g~~ 216 (557)
T PRK08199 189 PGAADLARLAELLARAERPLVILGGSGW 216 (557)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 4567899999999999999999999985
No 350
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=21.39 E-value=90 Score=33.54 Aligned_cols=29 Identities=17% Similarity=0.509 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCCc
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGISt 135 (403)
|..+.+++++++|.+|++-||+.|.|+..
T Consensus 191 ~~~~~~~~~~~~L~~AkrPvi~~G~g~~~ 219 (554)
T TIGR03254 191 PSPDSVDRAVELLKDAKRPLILLGKGAAY 219 (554)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 45678999999999999999999999863
No 351
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=21.33 E-value=69 Score=33.67 Aligned_cols=54 Identities=11% Similarity=0.017 Sum_probs=31.1
Q ss_pred eEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCC-CCC--------CCcccEEEECcHHHHHHH
Q 015613 336 AFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGE-TRA--------DDLTTLKISARLGEILPR 391 (403)
Q Consensus 336 llLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~-t~~--------d~~~~l~I~~~~~evL~~ 391 (403)
..|+..||-.+- +.+..++.+.|.+++++=+.. ... ...--+.|+|+.++++..
T Consensus 127 ~~I~~ASSGnTg--As~aaya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G~fDda~~~ 189 (411)
T COG0498 127 KTILCASSGNTG--ASAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDGNFDDAQEL 189 (411)
T ss_pred CEEEEeCCchHH--HHHHHHhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcCcHHHHHHH
Confidence 455666777665 455555666788876665554 221 111335688888755543
No 352
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=21.28 E-value=1e+02 Score=29.57 Aligned_cols=45 Identities=22% Similarity=0.184 Sum_probs=25.0
Q ss_pred EEcc--CcchhhHHHHHHHHHhCCCeEEEEcCCCCCC--CCcccEEEEC
Q 015613 339 VLGS--SLMTMSAYRLVRAAHEAGSTIAIVNVGETRA--DDLTTLKISA 383 (403)
Q Consensus 339 VVGT--SL~V~p~~~lv~~a~~~g~~liiIN~~~t~~--d~~~~l~I~~ 383 (403)
|+|. |-++.-+..+..+....|.++++||++|..- +...++-|++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird 49 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRD 49 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHh
Confidence 4564 5556666777777777899999999998643 3344555444
No 353
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=21.24 E-value=49 Score=27.88 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=11.0
Q ss_pred CcEEEEeCCCCCcc
Q 015613 123 AKLIVLTGAGISTE 136 (403)
Q Consensus 123 k~IVVlTGAGISts 136 (403)
++|+++.|+|+|++
T Consensus 4 kkIllvC~~G~sTS 17 (106)
T PRK10499 4 KHIYLFCSAGMSTS 17 (106)
T ss_pred CEEEEECCCCccHH
Confidence 46888888888866
No 354
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.23 E-value=54 Score=35.21 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=9.9
Q ss_pred CCCCCCCCCCccc
Q 015613 297 HIPTCQKCNGVLK 309 (403)
Q Consensus 297 ~iP~Cp~Cgg~lr 309 (403)
....|+.||....
T Consensus 239 ~~l~Ch~Cg~~~~ 251 (505)
T TIGR00595 239 GKLRCHYCGYQEP 251 (505)
T ss_pred CeEEcCCCcCcCC
Confidence 3568999998765
No 355
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=21.19 E-value=76 Score=35.31 Aligned_cols=10 Identities=30% Similarity=0.986 Sum_probs=7.3
Q ss_pred EEcCCCCccc
Q 015613 232 VVCLDCGFSF 241 (403)
Q Consensus 232 ~~C~~C~~~~ 241 (403)
..|+.|+...
T Consensus 2 ~~Cp~Cg~~n 11 (645)
T PRK14559 2 LICPQCQFEN 11 (645)
T ss_pred CcCCCCCCcC
Confidence 3699999753
No 356
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=21.05 E-value=1.1e+02 Score=31.95 Aligned_cols=39 Identities=15% Similarity=0.343 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCCc-----------cCCCCCcCCC
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST-----------ECGIPDYRSP 145 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGISt-----------sSGIPdFRs~ 145 (403)
+..+.+++++++|++|++.+|+.|.|... ..|+|-+-+.
T Consensus 196 ~~~~~i~~~~~~l~~AkrPvi~~G~g~~~~a~~~l~~lae~~~~PV~tt~ 245 (432)
T TIGR00173 196 LDPESLDELWDRLNQAKRGVIVAGPLPPAEDAEALAALAEALGWPLLADP 245 (432)
T ss_pred CChhhHHHHHHHHhhcCCcEEEEcCCCcHHHHHHHHHHHHhCCCeEEEeC
Confidence 44567999999999999999999999863 2467766443
No 357
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=20.96 E-value=2.5e+02 Score=21.46 Aligned_cols=54 Identities=17% Similarity=0.328 Sum_probs=31.4
Q ss_pred EEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhCCC
Q 015613 337 FLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSL 398 (403)
Q Consensus 337 lLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~~~ 398 (403)
++|||.++.- ..++....+.|..+.+|-..+...+.. ..++.+.+.+.++..++
T Consensus 2 vvViGgG~ig---~E~A~~l~~~g~~vtli~~~~~~~~~~-----~~~~~~~~~~~l~~~gV 55 (80)
T PF00070_consen 2 VVVIGGGFIG---IELAEALAELGKEVTLIERSDRLLPGF-----DPDAAKILEEYLRKRGV 55 (80)
T ss_dssp EEEESSSHHH---HHHHHHHHHTTSEEEEEESSSSSSTTS-----SHHHHHHHHHHHHHTTE
T ss_pred EEEECcCHHH---HHHHHHHHHhCcEEEEEeccchhhhhc-----CHHHHHHHHHHHHHCCC
Confidence 5778877643 344444456688888888777665222 33455555555554444
No 358
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=20.93 E-value=99 Score=33.56 Aligned_cols=28 Identities=14% Similarity=0.367 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
+....+++++++|.+|++.+|++|.|..
T Consensus 185 ~~~~~i~~a~~~L~~A~rPvil~G~g~~ 212 (588)
T PRK07525 185 GGEQSLAEAAELLSEAKFPVILSGAGVV 212 (588)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 3457899999999999999999999985
No 359
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=20.84 E-value=1e+02 Score=33.15 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCCc
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGISt 135 (403)
|..+.+++++++|++|++.+|+.|.|+..
T Consensus 196 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~~ 224 (564)
T PRK08155 196 FDEESIRDAAAMINAAKRPVLYLGGGVIN 224 (564)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 44567999999999999999999999963
No 360
>PF04475 DUF555: Protein of unknown function (DUF555); InterPro: IPR007564 This is a family of uncharacterised, hypothetical archaeal proteins.
Probab=20.79 E-value=64 Score=27.26 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=15.0
Q ss_pred CCCCCCCCCcccCcEEecC
Q 015613 298 IPTCQKCNGVLKPDVVFFG 316 (403)
Q Consensus 298 iP~Cp~Cgg~lrP~Vv~Fg 316 (403)
.-.||.||..|.|..+.=+
T Consensus 47 ~~~cP~Cge~~~~a~vva~ 65 (102)
T PF04475_consen 47 DTICPKCGEELDSAFVVAD 65 (102)
T ss_pred cccCCCCCCccCceEEEec
Confidence 4579999999999876433
No 361
>PRK05978 hypothetical protein; Provisional
Probab=20.76 E-value=51 Score=29.81 Aligned_cols=21 Identities=10% Similarity=0.089 Sum_probs=14.3
Q ss_pred CCCCCCCCCCcccCcEEecCC
Q 015613 297 HIPTCQKCNGVLKPDVVFFGD 317 (403)
Q Consensus 297 ~iP~Cp~Cgg~lrP~Vv~FgE 317 (403)
..++|+.||-.+...--.++-
T Consensus 51 v~~~C~~CG~~~~~~~a~Dgp 71 (148)
T PRK05978 51 PVDHCAACGEDFTHHRADDLP 71 (148)
T ss_pred cCCCccccCCccccCCccccC
Confidence 357899999877766554433
No 362
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=20.66 E-value=60 Score=33.88 Aligned_cols=11 Identities=27% Similarity=0.836 Sum_probs=9.1
Q ss_pred CCCCCCCCCcc
Q 015613 298 IPTCQKCNGVL 308 (403)
Q Consensus 298 iP~Cp~Cgg~l 308 (403)
...||+||..|
T Consensus 33 ~a~CpRCg~~L 43 (403)
T TIGR00155 33 KAACPRCGTTL 43 (403)
T ss_pred eeECCCCCCCC
Confidence 46799999877
No 363
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.48 E-value=5.1e+02 Score=23.95 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=24.0
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCC
Q 015613 333 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGE 370 (403)
Q Consensus 333 ~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~ 370 (403)
.+|-+|++++..... .+.+..++++.|+|.++...
T Consensus 55 ~vdgii~~~~~~~~~---~~~~~~~~~~ipvV~i~~~~ 89 (269)
T cd06281 55 RMDGIIIAPGDERDP---ELVDALASLDLPIVLLDRDM 89 (269)
T ss_pred CCCEEEEecCCCCcH---HHHHHHHhCCCCEEEEeccc
Confidence 689999987643222 33444556789999999764
No 364
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=20.45 E-value=97 Score=33.47 Aligned_cols=28 Identities=32% Similarity=0.547 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
|....+++++++|.+|++.||+.|.|+.
T Consensus 200 ~~~~~i~~~~~~L~~A~rPvIl~G~g~~ 227 (571)
T PRK07710 200 PNLLQIRKLVQAVSVAKKPVILAGAGVL 227 (571)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 4557799999999999999999999975
No 365
>PRK08611 pyruvate oxidase; Provisional
Probab=20.44 E-value=1.2e+02 Score=32.86 Aligned_cols=28 Identities=25% Similarity=0.538 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
|..+.+++++++|++|++.||+.|.|..
T Consensus 188 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (576)
T PRK08611 188 PKPKDIKKAAKLINKAKKPVILAGLGAK 215 (576)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECcCcc
Confidence 4557899999999999999999999985
No 366
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=20.34 E-value=1e+02 Score=33.16 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 108 SIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 108 ~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
..+.+++++++|.+|++.||++|.|.-
T Consensus 187 ~~~~i~~~~~~L~~AkrPvi~~G~g~~ 213 (558)
T TIGR00118 187 HPLQIKKAAELINLAKKPVILVGGGVI 213 (558)
T ss_pred CHHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 456799999999999999999999985
No 367
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=20.32 E-value=1.1e+02 Score=33.28 Aligned_cols=28 Identities=14% Similarity=0.349 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
|..+.+++++++|.+|++.||+.|.|.-
T Consensus 188 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (586)
T PRK06276 188 GHPLQIKKAAELIAEAERPVILAGGGVI 215 (586)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEECCCcC
Confidence 3467899999999999999999999984
No 368
>PF14353 CpXC: CpXC protein
Probab=20.29 E-value=57 Score=27.97 Aligned_cols=18 Identities=33% Similarity=0.992 Sum_probs=15.5
Q ss_pred eccceeeEEcCCCCcccc
Q 015613 225 LHGTVYTVVCLDCGFSFC 242 (403)
Q Consensus 225 lHGs~~~~~C~~C~~~~~ 242 (403)
+-|++...+|++||+.+.
T Consensus 32 l~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 32 LDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred HcCCcCEEECCCCCCcee
Confidence 479999999999998653
No 369
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=20.18 E-value=99 Score=31.18 Aligned_cols=43 Identities=19% Similarity=0.486 Sum_probs=28.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeCCCCCccCCCCCcCCCCC
Q 015613 99 KAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNG 147 (403)
Q Consensus 99 ~~~~~~~~p~~~~l~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~G 147 (403)
+.+|.+.|-.....+.+.++|+ ...+||.+|.| |||.+.+.+.
T Consensus 159 rvv~sp~p~~iv~~~~I~~LL~-~G~iVI~~ggg-----giPvi~e~~~ 201 (310)
T TIGR00746 159 RVVPSPRPKDIVEAETIKTLVE-NGVIVISSGGG-----GVPVVLEGAE 201 (310)
T ss_pred EeecCCCchhhccHHHHHHHHH-CCCEEEeCCCC-----CcCEEecCCe
Confidence 4566544444556666666666 45788888877 8999886443
No 370
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=20.10 E-value=5.9e+02 Score=23.42 Aligned_cols=35 Identities=14% Similarity=0.272 Sum_probs=24.9
Q ss_pred hhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCC
Q 015613 332 KECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGE 370 (403)
Q Consensus 332 ~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~ 370 (403)
..+|.+|++++...- ..+..+.+.|.++|.+|...
T Consensus 54 ~~vdgii~~~~~~~~----~~~~~~~~~~ipvV~~~~~~ 88 (268)
T cd06270 54 RRCDALILHSKALSD----DELIELAAQVPPLVLINRHI 88 (268)
T ss_pred cCCCEEEEecCCCCH----HHHHHHhhCCCCEEEEeccC
Confidence 479999999875431 12455566799999999754
No 371
>PRK05858 hypothetical protein; Provisional
Probab=20.09 E-value=1.3e+02 Score=32.20 Aligned_cols=28 Identities=7% Similarity=0.360 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
|..+.+++++++|.+|++.+|+.|.|..
T Consensus 188 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (542)
T PRK05858 188 PDPDALARAAGLLAEAQRPVIMAGTDVW 215 (542)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 4567899999999999999999999985
Done!