Query 015613
Match_columns 403
No_of_seqs 144 out of 1229
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 15:39:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015613.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015613hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yc5_A NAD-dependent deacetyla 100.0 2.8E-64 9.7E-69 482.7 23.6 241 112-399 3-246 (246)
2 1ma3_A SIR2-AF2, transcription 100.0 2.9E-63 9.9E-68 477.5 23.6 240 109-396 2-246 (253)
3 3riy_A NAD-dependent deacetyla 100.0 2E-62 6.9E-67 476.5 21.5 254 110-393 9-272 (273)
4 1m2k_A Silent information regu 100.0 3.8E-62 1.3E-66 468.7 21.6 234 113-396 3-240 (249)
5 3u31_A SIR2A, transcriptional 100.0 8.4E-61 2.9E-65 468.3 25.3 240 107-391 30-275 (290)
6 1q1a_A HST2 protein; ternary c 100.0 9.6E-60 3.3E-64 461.1 22.8 244 109-398 5-279 (289)
7 2hjh_A NAD-dependent histone d 100.0 4.4E-60 1.5E-64 475.3 20.1 277 109-402 33-322 (354)
8 4iao_A NAD-dependent histone d 100.0 2.8E-59 9.5E-64 480.4 22.9 280 107-402 169-460 (492)
9 3glr_A NAD-dependent deacetyla 100.0 1E-59 3.5E-64 459.3 18.2 238 111-398 10-265 (285)
10 1s5p_A NAD-dependent deacetyla 100.0 1.1E-59 3.7E-64 448.2 17.9 225 122-396 1-230 (235)
11 3k35_A NAD-dependent deacetyla 100.0 5.1E-60 1.8E-64 466.4 14.7 242 109-402 31-275 (318)
12 1q14_A HST2 protein; histone d 100.0 1E-58 3.5E-63 465.6 20.6 246 107-398 11-287 (361)
13 1j8f_A SIRT2, sirtuin 2, isofo 100.0 2.6E-58 9E-63 457.1 22.6 240 110-398 29-304 (323)
14 3pki_A NAD-dependent deacetyla 100.0 6.6E-59 2.3E-63 462.5 16.3 242 109-402 31-275 (355)
15 3lq1_A 2-succinyl-5-enolpyruvy 92.0 0.34 1.2E-05 50.6 8.3 66 329-396 285-352 (578)
16 2iht_A Carboxyethylarginine sy 91.1 0.47 1.6E-05 49.5 8.1 67 327-396 281-350 (573)
17 3hww_A 2-succinyl-5-enolpyruvy 90.8 0.44 1.5E-05 49.5 7.6 66 326-393 271-338 (556)
18 2c31_A Oxalyl-COA decarboxylas 90.5 0.17 5.7E-06 52.8 4.0 69 328-396 267-337 (568)
19 1ozh_A ALS, acetolactate synth 90.4 0.5 1.7E-05 49.3 7.5 66 327-396 268-335 (566)
20 2x7j_A 2-succinyl-5-enolpyruvy 90.3 0.74 2.5E-05 48.4 8.8 66 328-396 305-372 (604)
21 1ybh_A Acetolactate synthase, 89.8 0.35 1.2E-05 50.6 5.8 68 326-395 271-340 (590)
22 3eya_A Pyruvate dehydrogenase 89.8 0.56 1.9E-05 48.6 7.3 63 327-396 259-323 (549)
23 4feg_A Pyruvate oxidase; carba 89.4 0.63 2.2E-05 48.9 7.5 67 327-397 270-338 (603)
24 2q28_A Oxalyl-COA decarboxylas 89.0 0.3 1E-05 50.8 4.5 66 328-395 265-332 (564)
25 2pgn_A Cyclohexane-1,2-dione h 88.6 0.36 1.2E-05 50.6 4.8 67 327-396 265-333 (589)
26 2pan_A Glyoxylate carboligase; 88.2 0.73 2.5E-05 48.4 7.0 67 327-395 287-355 (616)
27 1v5e_A Pyruvate oxidase; oxido 86.9 1.4 4.8E-05 46.1 8.1 67 326-397 262-331 (590)
28 1t9b_A Acetolactate synthase, 83.9 1.8 6.3E-05 46.2 7.4 69 328-396 351-428 (677)
29 1o97_D Electron transferring f 83.4 2.1 7.3E-05 41.7 7.0 59 333-396 259-318 (320)
30 2uz1_A Benzaldehyde lyase; thi 81.1 0.61 2.1E-05 48.5 2.2 65 331-396 267-333 (563)
31 2lcq_A Putative toxin VAPC6; P 79.4 0.76 2.6E-05 40.2 2.0 12 231-242 132-143 (165)
32 1lko_A Rubrerythrin all-iron(I 78.8 0.78 2.7E-05 41.4 1.9 14 229-242 153-166 (191)
33 1q6z_A BFD, BFDC, benzoylforma 77.0 0.84 2.9E-05 46.9 1.7 70 326-396 259-329 (528)
34 2k5c_A Uncharacterized protein 74.0 3.4 0.00012 32.5 4.1 29 298-332 51-79 (95)
35 2vpz_A Thiosulfate reductase; 73.8 5.7 0.0002 42.7 7.4 56 331-386 197-255 (765)
36 2kdx_A HYPA, hydrogenase/ureas 69.5 2.7 9.2E-05 34.8 2.8 20 223-242 65-84 (119)
37 1efp_A ETF, protein (electron 68.7 7.2 0.00025 37.7 6.1 59 333-396 248-307 (307)
38 1efv_A Electron transfer flavo 68.5 7.1 0.00024 37.9 6.0 59 333-396 253-312 (315)
39 3a43_A HYPD, hydrogenase nicke 68.0 1.6 5.3E-05 37.5 1.0 22 223-244 62-83 (139)
40 2wvg_A PDC, pyruvate decarboxy 67.6 2.4 8.3E-05 43.9 2.6 66 327-396 270-335 (568)
41 2vbi_A Pyruvate decarboxylase; 67.1 2.6 8.8E-05 43.7 2.7 66 327-396 270-335 (566)
42 1yuz_A Nigerythrin; rubrythrin 66.5 2.9 9.8E-05 38.1 2.6 14 229-242 169-182 (202)
43 2vk8_A Pyruvate decarboxylase 65.9 2.6 8.8E-05 43.6 2.4 65 326-394 271-335 (563)
44 1h0h_A Formate dehydrogenase ( 65.4 9.3 0.00032 42.5 6.9 57 330-386 181-239 (977)
45 3pwf_A Rubrerythrin; non heme 64.0 3.4 0.00012 36.6 2.5 13 230-242 137-149 (170)
46 2e7z_A Acetylene hydratase AHY 63.8 5 0.00017 42.8 4.2 52 331-382 158-212 (727)
47 2iv2_X Formate dehydrogenase H 63.6 5.2 0.00018 42.6 4.3 55 330-384 163-219 (715)
48 2ivf_A Ethylbenzene dehydrogen 63.0 8.4 0.00029 42.8 6.0 57 330-386 243-301 (976)
49 2kn9_A Rubredoxin; metalloprot 63.0 8.4 0.00029 30.2 4.3 15 229-243 25-39 (81)
50 1e8j_A Rubredoxin; iron-sulfur 63.0 9.9 0.00034 27.1 4.3 14 230-243 2-15 (52)
51 6rxn_A Rubredoxin; electron tr 62.1 5.5 0.00019 27.8 2.8 14 230-243 3-16 (46)
52 2vbf_A Branched-chain alpha-ke 61.8 2 7E-05 44.5 0.7 67 326-396 288-354 (570)
53 1ovm_A Indole-3-pyruvate decar 61.7 3.3 0.00011 42.6 2.3 65 326-394 269-333 (552)
54 3trj_A Phosphoheptose isomeras 60.9 13 0.00043 33.2 5.8 56 330-385 111-170 (201)
55 2nap_A Protein (periplasmic ni 60.8 8.5 0.00029 41.0 5.3 57 330-386 163-223 (723)
56 1twf_L ABC10-alpha, DNA-direct 60.0 5.7 0.00019 30.2 2.7 11 231-241 28-38 (70)
57 1dx8_A Rubredoxin; electron tr 60.0 12 0.00041 28.4 4.6 16 228-243 4-19 (70)
58 2v3b_B Rubredoxin 2, rubredoxi 59.3 9.5 0.00032 27.5 3.7 14 230-243 2-15 (55)
59 4ayb_P DNA-directed RNA polyme 58.4 2.9 9.9E-05 29.5 0.7 13 231-243 3-15 (48)
60 1s24_A Rubredoxin 2; electron 57.5 10 0.00034 30.1 3.9 15 229-243 33-47 (87)
61 3cf4_G Acetyl-COA decarboxylas 56.9 6.9 0.00024 34.1 3.2 26 109-134 21-46 (170)
62 1tk9_A Phosphoheptose isomeras 55.3 19 0.00063 30.9 5.7 56 329-384 106-162 (188)
63 2i2w_A Phosphoheptose isomeras 54.5 31 0.0011 30.5 7.3 57 329-385 127-184 (212)
64 2f62_A Nucleoside 2-deoxyribos 53.7 67 0.0023 27.8 9.1 77 320-397 54-159 (161)
65 2xbl_A Phosphoheptose isomeras 53.6 16 0.00054 31.7 5.0 58 329-386 112-170 (198)
66 3na7_A HP0958; flagellar bioge 53.2 6.1 0.00021 36.9 2.3 20 223-246 194-213 (256)
67 3i9v_3 NADH-quinone oxidoreduc 53.2 16 0.00054 39.6 5.9 59 328-387 387-472 (783)
68 1eu1_A Dimethyl sulfoxide redu 52.6 9.1 0.00031 41.2 3.9 53 330-382 174-237 (780)
69 3szu_A ISPH, 4-hydroxy-3-methy 51.8 31 0.0011 33.7 7.1 73 323-396 215-298 (328)
70 1q16_A Respiratory nitrate red 50.5 8.9 0.0003 44.0 3.5 53 330-382 243-297 (1247)
71 1ti6_A Pyrogallol hydroxytrans 49.5 9.7 0.00033 41.6 3.5 52 330-381 205-264 (875)
72 1kqf_A FDH-N alpha, formate de 49.3 12 0.00041 41.8 4.2 54 330-383 219-275 (1015)
73 3dnf_A ISPH, LYTB, 4-hydroxy-3 48.1 29 0.001 33.4 6.3 76 310-386 184-265 (297)
74 3cf4_G Acetyl-COA decarboxylas 47.7 13 0.00044 32.2 3.4 61 329-395 103-166 (170)
75 3ml1_A NAPA, periplasmic nitra 46.1 25 0.00086 38.1 6.1 55 330-384 175-233 (802)
76 2yva_A DNAA initiator-associat 46.0 48 0.0017 28.5 7.0 57 329-385 105-165 (196)
77 4rxn_A Rubredoxin; electron tr 45.5 21 0.0007 25.7 3.6 14 230-243 2-15 (54)
78 1yk4_A Rubredoxin, RD; electro 45.1 14 0.00049 26.3 2.7 13 231-243 2-14 (52)
79 2gmg_A Hypothetical protein PF 44.4 11 0.00039 30.8 2.3 12 230-241 66-77 (105)
80 3sho_A Transcriptional regulat 43.3 40 0.0014 28.8 5.9 57 328-384 82-139 (187)
81 1vim_A Hypothetical protein AF 42.7 13 0.00044 32.8 2.7 54 331-384 87-141 (200)
82 1x92_A APC5045, phosphoheptose 41.3 40 0.0014 29.2 5.7 58 329-386 109-170 (199)
83 1tmo_A TMAO reductase, trimeth 41.1 18 0.00062 39.1 4.0 52 331-382 208-274 (829)
84 2nxw_A Phenyl-3-pyruvate decar 40.1 11 0.00037 39.0 2.0 66 327-396 283-348 (565)
85 2xig_A Ferric uptake regulatio 36.7 31 0.0011 29.2 4.1 52 184-243 58-111 (150)
86 2h1q_A Hypothetical protein; Z 36.2 32 0.0011 32.6 4.4 69 328-397 181-256 (270)
87 3l5o_A Uncharacterized protein 35.7 40 0.0014 32.0 5.0 71 326-397 179-256 (270)
88 2gnr_A Conserved hypothetical 35.3 15 0.00053 31.5 1.8 16 226-241 42-57 (145)
89 1m3s_A Hypothetical protein YC 34.9 42 0.0014 28.7 4.7 51 331-381 77-128 (186)
90 3h0g_L DNA-directed RNA polyme 34.4 23 0.00078 26.4 2.4 10 298-307 38-47 (63)
91 2khz_A C-MYC-responsive protei 34.3 1.6E+02 0.0055 25.2 8.4 50 320-370 64-113 (165)
92 2xhz_A KDSD, YRBH, arabinose 5 33.1 41 0.0014 28.6 4.3 54 330-383 93-147 (183)
93 3irb_A Uncharacterized protein 32.9 18 0.0006 31.0 1.8 12 230-241 46-57 (145)
94 3etn_A Putative phosphosugar i 32.8 35 0.0012 30.5 4.0 54 330-383 103-159 (220)
95 1e2b_A Enzyme IIB-cellobiose; 32.6 14 0.00047 29.9 1.0 14 123-136 4-17 (106)
96 1mzb_A Ferric uptake regulatio 32.3 45 0.0015 27.6 4.3 52 184-243 50-103 (136)
97 2jrp_A Putative cytoplasmic pr 31.8 16 0.00053 28.6 1.1 12 231-242 18-29 (81)
98 1jeo_A MJ1247, hypothetical pr 30.1 47 0.0016 28.2 4.2 52 331-383 80-132 (180)
99 3cvj_A Putative phosphoheptose 29.3 45 0.0015 30.0 4.1 52 331-382 106-169 (243)
100 3mwm_A ZUR, putative metal upt 29.2 39 0.0013 28.2 3.4 55 184-243 45-99 (139)
101 1ytl_A Acetyl-COA decarboxylas 29.0 28 0.00097 30.6 2.5 35 332-368 107-143 (174)
102 3sho_A Transcriptional regulat 28.9 1.2E+02 0.004 25.7 6.6 51 318-368 23-73 (187)
103 1nri_A Hypothetical protein HI 28.3 35 0.0012 32.3 3.3 54 330-383 137-191 (306)
104 4hpq_A ATG31, KLTH0C07942P; au 27.7 25 0.00086 26.4 1.6 15 10-24 1-15 (69)
105 1rcu_A Conserved hypothetical 26.9 3.3E+02 0.011 24.1 9.9 70 323-395 108-192 (195)
106 3jy6_A Transcriptional regulat 25.9 3.4E+02 0.012 23.8 10.0 35 332-371 62-96 (276)
107 3jx9_A Putative phosphoheptose 25.8 52 0.0018 28.9 3.7 44 330-373 74-118 (170)
108 2o03_A Probable zinc uptake re 25.7 63 0.0022 26.4 4.0 52 184-243 42-95 (131)
109 1m3s_A Hypothetical protein YC 25.6 1.7E+02 0.0058 24.7 7.0 50 318-367 21-70 (186)
110 2w57_A Ferric uptake regulatio 25.5 63 0.0022 27.3 4.1 52 184-243 49-102 (150)
111 2f9i_B Acetyl-coenzyme A carbo 25.4 1.9E+02 0.0065 27.3 7.8 20 348-367 144-163 (285)
112 4fyk_A Deoxyribonucleoside 5'- 24.2 1.6E+02 0.0055 25.3 6.5 48 320-368 55-102 (152)
113 3hh1_A Tetrapyrrole methylase 24.1 2.7E+02 0.0092 22.0 7.6 53 314-366 59-114 (117)
114 2jne_A Hypothetical protein YF 23.9 28 0.00094 28.2 1.3 11 298-308 61-71 (101)
115 3fxa_A SIS domain protein; str 23.5 52 0.0018 28.5 3.2 53 330-382 89-142 (201)
116 1qxf_A GR2, 30S ribosomal prot 23.4 54 0.0018 24.6 2.7 14 227-240 3-16 (66)
117 3eya_A Pyruvate dehydrogenase 22.8 55 0.0019 33.5 3.7 28 107-134 186-213 (549)
118 1y0p_A Fumarate reductase flav 22.6 33 0.0011 35.2 2.0 35 333-371 126-160 (571)
119 2kre_A Ubiquitin conjugation f 22.1 79 0.0027 24.9 3.8 18 232-249 42-59 (100)
120 1vim_A Hypothetical protein AF 22.1 1.9E+02 0.0064 25.0 6.7 49 319-367 32-80 (200)
121 3eyy_A Putative iron uptake re 22.0 55 0.0019 27.5 3.0 52 184-243 49-102 (145)
122 2fe3_A Peroxide operon regulat 21.6 96 0.0033 25.8 4.4 52 184-243 53-105 (145)
123 2aml_A SIS domain protein; 469 21.2 1.1E+02 0.0037 29.7 5.3 54 331-384 95-150 (373)
124 4h08_A Putative hydrolase; GDS 21.2 1.5E+02 0.0051 25.0 5.7 14 309-322 20-33 (200)
125 4ets_A Ferric uptake regulatio 20.9 81 0.0028 27.0 3.9 52 184-243 66-119 (162)
126 3hba_A Putative phosphosugar i 20.6 1.3E+02 0.0046 28.7 5.8 53 332-384 89-142 (334)
127 1tvm_A PTS system, galactitol- 20.5 28 0.00096 28.2 0.7 15 122-136 21-35 (113)
128 3huu_A Transcription regulator 20.4 4.6E+02 0.016 23.3 9.6 35 332-370 82-116 (305)
No 1
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=100.00 E-value=2.8e-64 Score=482.65 Aligned_cols=241 Identities=37% Similarity=0.661 Sum_probs=209.0
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCCccCCCCCcCCCCCcccCCCC--CcChHHHhhChhHHHHHHHHHHhhhhccccCCCCH
Q 015613 112 INQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFK--PITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNP 189 (403)
Q Consensus 112 l~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~--p~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn~ 189 (403)
+++++++|++|++|||+|||||||+||||||||++|+|.. |. .++.+.|..+|..+|.||.+.+. .+.+++||.
T Consensus 3 i~~l~~~l~~a~~ivv~tGAGiS~~SGIpdfR~~~Glw~~-~~~~~~~~~~f~~~p~~~~~~~~~~~~---~~~~~~Pn~ 78 (246)
T 1yc5_A 3 MKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKK-YSQNVFDIDFFYSHPEEFYRFAKEGIF---PMLQAKPNL 78 (246)
T ss_dssp CHHHHHHHHHCSSEEEEECGGGTGGGTCCCC------------CCTTBHHHHHHCHHHHHHHHHHHTG---GGGGCCCCH
T ss_pred HHHHHHHHHhCCCEEEEECceeehhhCCCCccCCCccccc-CCCceecHHHHhhCHHHHHHHHHHHHH---HhccCCCCH
Confidence 5789999999999999999999999999999999999985 53 46788999999999999976543 345899999
Q ss_pred HHHHHHHHHHhCCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCC
Q 015613 190 AHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 268 (403)
Q Consensus 190 ~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~~g~ 268 (403)
+|++|++|+++|++++||||||||||++||+++ +|+||+++.++|..|++.|+.+.+.+.+
T Consensus 79 ~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~------------------ 140 (246)
T 1yc5_A 79 AHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKL------------------ 140 (246)
T ss_dssp HHHHHHHHHHTTSCSEEEECCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEEHHHHHHHT------------------
T ss_pred HHHHHHHHHhcCCCceEEeccccchHhHcCCCcEEEecCccceeEcCCCCCCCcHHHHHHHh------------------
Confidence 999999999999999999999999999999988 9999999999999999988765442111
Q ss_pred CCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcchhh
Q 015613 269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMS 348 (403)
Q Consensus 269 p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p 348 (403)
....+|+||.|||+|||+||||||.+|++.++++.+++++||++|||||||.|+|
T Consensus 141 -------------------------~~~~~p~C~~Cgg~lrP~vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P 195 (246)
T 1yc5_A 141 -------------------------ESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYP 195 (246)
T ss_dssp -------------------------TTCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEET
T ss_pred -------------------------ccCCCCCCCCCCCccCcceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCcchh
Confidence 0114799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhCCCC
Q 015613 349 AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS 399 (403)
Q Consensus 349 ~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~~~~ 399 (403)
+++++..++++|+++|+||+++++.++.+++.|.++++++|++|++.++|+
T Consensus 196 ~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~lg~~ 246 (246)
T 1yc5_A 196 AAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGIS 246 (246)
T ss_dssp GGGHHHHHHHHTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHcCCC
Confidence 999999888889999999999999999999999999999999999998875
No 2
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=100.00 E-value=2.9e-63 Score=477.53 Aligned_cols=240 Identities=39% Similarity=0.696 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCccCCCCCcCCCCCcccCCCCC---cChHHHhhChhHHHHHHHHHHhhhhccccC
Q 015613 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAA 185 (403)
Q Consensus 109 ~~~l~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~p---~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a 185 (403)
++++++++++|++|++|||+|||||||+||||||||++|+|.. |.| ++.+.|..+|..+|.||.+.+. .+. +
T Consensus 2 ~~~i~~l~~~l~~a~~ivv~tGAGiS~~SGIPdfR~~~Glw~~-~~~~~~~~~~~f~~~p~~~~~f~~~~~~---~~~-~ 76 (253)
T 1ma3_A 2 EDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRK-YDPEEVASISGFKRNPRAFWEFSMEMKD---KLF-A 76 (253)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGSCC----------CCSCS-SCHHHHTBHHHHTTCHHHHHHHHHHTHH---HHT-C
T ss_pred hHHHHHHHHHHHhCCcEEEEEchhhhHhhCCCCcCCCCccccc-CChhheecHHHHhcCHHHHHHHHHHHHH---hcc-C
Confidence 3678999999999999999999999999999999999999974 666 6788899999999999876543 234 9
Q ss_pred CCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhh
Q 015613 186 QPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESL 264 (403)
Q Consensus 186 ~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l 264 (403)
+||.+|++|++|+++|++++||||||||||++||+++ +|+||+++.++|..|++.|+.+.+.+.+
T Consensus 77 ~Pn~~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~-------------- 142 (253)
T 1ma3_A 77 EPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDF-------------- 142 (253)
T ss_dssp CCCHHHHHHHHHHHTTSEEEEEESCCSCHHHHHTCCSEEETTEEEEEEEETTTCCEEEGGGTHHHH--------------
T ss_pred CCCHHHHHHHHHHhcCCCeEEEeccccccHhHhCCCCEEEeCCCcCeeeeCCCCCcCcHHHHHHHh--------------
Confidence 9999999999999999999999999999999999998 9999999999999999988766543211
Q ss_pred cCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCC-cccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccC
Q 015613 265 DYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNG-VLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSS 343 (403)
Q Consensus 265 ~~g~p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg-~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTS 343 (403)
....+|+||.||| .|||+||||||.+|++.++++.+++++||++||||||
T Consensus 143 -----------------------------~~~~~p~C~~Cgg~~lrP~Vv~FgE~lp~~~~~~a~~~~~~adl~lviGTS 193 (253)
T 1ma3_A 143 -----------------------------NKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSS 193 (253)
T ss_dssp -----------------------------HTTCCCCCTTTCCSCEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCC
T ss_pred -----------------------------ccCCCCCCCCCCCccccceEEEeCCCCCHHHHHHHHHHHHhCCEEEEECCC
Confidence 0124799999999 9999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhC
Q 015613 344 LMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 344 L~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~ 396 (403)
|.|+|+++|+..+++.|+++|+||+++++.++.+++.|.++++++|++|++.+
T Consensus 194 l~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l 246 (253)
T 1ma3_A 194 LVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEV 246 (253)
T ss_dssp SCEETGGGHHHHHHHHTCEEEEEESSCCTTGGGCSEEEESCHHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHHcCCeEEEEeCCCCCCCCceeEEEeCCHHHHHHHHHHHH
Confidence 99999999999888889999999999999999999999999999999998753
No 3
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=100.00 E-value=2e-62 Score=476.51 Aligned_cols=254 Identities=27% Similarity=0.520 Sum_probs=211.7
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCccCCCCCcCCCCCcccCCCCC---cChHHHhhChhHHHHHHHHHHhhhhccccCC
Q 015613 110 EDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQ 186 (403)
Q Consensus 110 ~~l~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~p---~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~ 186 (403)
+++++|+++|++|++|||+|||||||+|||||||+++|+|+. |.+ .+++.|..+|..+|.||... +..+.+++
T Consensus 9 ~~i~~l~~~l~~a~~ivvlTGAGiSt~SGIPdFR~~~Glw~~-~~~~~l~~~~~f~~~p~~~w~fy~~~---~~~~~~~~ 84 (273)
T 3riy_A 9 SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRK-WQAQDLATPLAFAHNPSRVWEFYHYR---REVMGSKE 84 (273)
T ss_dssp CCHHHHHHHHHHCSEEEEEECGGGTGGGTCCCSSSGGGEETT-EEHHHHSSHHHHHHCHHHHHHHHHHH---HHHHTTCC
T ss_pred HHHHHHHHHHHhCCcEEEEECcccchhhCCCccccccchhhh-CChhhcCCHHHHhhCHHHHHHHHHHH---HHHhhhCC
Confidence 578999999999999999999999999999999999999974 544 46788888888777766421 12345899
Q ss_pred CCHHHHHHHHHHH----hCCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHH
Q 015613 187 PNPAHFALASLEK----AGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAI 261 (403)
Q Consensus 187 Pn~~H~~La~L~~----~gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~ 261 (403)
||.+|++|++|++ +|++++||||||||||++||+++ +|+||+++.++|.+|++.|++.. +|.+...
T Consensus 85 Pn~~H~~La~Le~~~~~~g~~~~viTQNiDgLh~~AG~~~vielHG~~~~~~C~~C~~~~~~~~--------~p~~~~~- 155 (273)
T 3riy_A 85 PNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYK--------SPICPAL- 155 (273)
T ss_dssp CCHHHHHHHHHHHHHHTTTCEEEEEESCCSCHHHHHTCCSEEETTEEEEEEEETTTCCEEECCC--------SSSSGGG-
T ss_pred CCHHHHHHHHHHHhhhhcCceeEEEEecccchHhhcCCCCEEEecCcCCeeEcCCCCCcccccc--------cchhhhh-
Confidence 9999999999995 59999999999999999999988 99999999999999999876431 1111100
Q ss_pred hhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCC--CCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEE
Q 015613 262 ESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTC--QKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLV 339 (403)
Q Consensus 262 ~~l~~g~p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~C--p~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLV 339 (403)
. + +..|+.+... .. .....+|+| |.|||.|||+||||||.+|++.++++.+++++|||+||
T Consensus 156 ---~-~----------~~~~~~~~~~-~~--~~~~~~P~C~~~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDl~lv 218 (273)
T 3riy_A 156 ---S-G----------KGAPEPGTQD-AS--IPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLV 218 (273)
T ss_dssp ---T-T----------CCCCSTTCCC-CC--CCGGGSCBCCGGGCCCBEEEEECCTTSBCCHHHHHHHHHHHHHCSEEEE
T ss_pred ---h-c----------ccCCcccccc-cc--cccCCCCCCCCCCCCCeeCCcEEEeCCcCCHHHHHHHHHHHhcCCEEEE
Confidence 0 0 0112222110 00 112368999 78999999999999999999999999999999999999
Q ss_pred EccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHH
Q 015613 340 LGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 393 (403)
Q Consensus 340 VGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~ 393 (403)
|||||+|+|+++|+..+.++|+++++||+++|+.|+.++++|+++++++||+|+
T Consensus 219 iGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~d~~~~~~i~g~~~~~l~~l~ 272 (273)
T 3riy_A 219 VGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 272 (273)
T ss_dssp ESCCSCEETGGGHHHHHHHTTCCEEEEESSCCTTGGGSSEEEESCHHHHHHHHH
T ss_pred EeeCCcchhHHHhHHHHHHCCCEEEEECCCCCCCCcceeEEEeCCHHHHHHHHh
Confidence 999999999999999888889999999999999999999999999999999986
No 4
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=100.00 E-value=3.8e-62 Score=468.75 Aligned_cols=234 Identities=33% Similarity=0.603 Sum_probs=210.9
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCccCCCCCcCCCCCcccCCCCC---cChHHHhhChhHHHHHHHHHHhhhhccccCCCCH
Q 015613 113 NQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNP 189 (403)
Q Consensus 113 ~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~p---~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn~ 189 (403)
++++++|++|++|||+|||||||+||||||||++|+|+. |.| ++.+.|.++|..+|.||.+.+. .+.+++||.
T Consensus 3 ~~l~~~i~~a~~ivvltGAGiS~~SGIPdfR~~~Glw~~-~~~~~~~~~~~f~~~p~~~w~~~~~~~~---~~~~~~Pn~ 78 (249)
T 1m2k_A 3 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKVWKWYAWRME---KVFNAQPNK 78 (249)
T ss_dssp HHHHHHHHTCSSEEEEECGGGGGGGTCCCSSSTTCHHHH-SCHHHHSSHHHHHHCHHHHHHHHHHHHH---HHHHCCCCH
T ss_pred HHHHHHHHhCCCEEEEECchhhhhhCCCCccCCCcCccC-CCHHhcccHHHHhcCHHHHHHHHHHHHH---HhCcCCCCH
Confidence 678999999999999999999999999999999999985 665 5788899999888887764432 335799999
Q ss_pred HHHHHHHHHHhCCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCC
Q 015613 190 AHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 268 (403)
Q Consensus 190 ~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~~g~ 268 (403)
+|++|++|+++|++++||||||||||++||+++ +|+||++..++|..|++.|+.+..
T Consensus 79 ~H~~La~L~~~g~~~~viTQNiDgLh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~---------------------- 136 (249)
T 1m2k_A 79 AHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESA---------------------- 136 (249)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCSEEETTEEEEEEEESSSSCEEECSSC----------------------
T ss_pred HHHHHHHHHhCCCCcEEEECCccchhhhcCCCcEEEecCCcceeEeCCCCCcccchhh----------------------
Confidence 999999999999999999999999999999988 999999999999999988754210
Q ss_pred CCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcchhh
Q 015613 269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMS 348 (403)
Q Consensus 269 p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p 348 (403)
++ ...+|+||.|||.|||+||||||.+|++.++++.+++++||++|||||||.|+|
T Consensus 137 ------------------~~------~~~~p~C~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~adlllviGTSl~V~P 192 (249)
T 1m2k_A 137 ------------------PK------IPPLPKCDKCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQP 192 (249)
T ss_dssp ------------------CC------SSSCCBCSSSSSBEEEEECCTTSCCCHHHHHHHHHHHHHCSEEEEESCCSCSTT
T ss_pred ------------------cc------CCCCCCCCCCCCCcCCeEEecCCCCCHHHHHHHHHHHhcCCEEEEEccCCCccc
Confidence 11 114799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhC
Q 015613 349 AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 349 ~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~ 396 (403)
+++++..+++.|+++|+||+++++.++.+++.|.++++++|++|++.+
T Consensus 193 ~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l 240 (249)
T 1m2k_A 193 AASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240 (249)
T ss_dssp GGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHH
Confidence 999999998899999999999999999999999999999999998754
No 5
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=100.00 E-value=8.4e-61 Score=468.26 Aligned_cols=240 Identities=26% Similarity=0.458 Sum_probs=208.2
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCCccCCCCCcCC-CCCcccCCCCCc---ChHHHhhChhHHHHHHHHHHhhhhcc
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRS-PNGAYSSGFKPI---THQQFVRSSRARRRYWARSYAGWRRF 182 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs-~~Gly~~~~~p~---~~~~f~~~~~~~~~fw~~~~~~~~~~ 182 (403)
+.++++++|+++|++|++|||+|||||||+|||||||+ ++|+|+. |.|. +...|..+|..+|.||.+.+. .
T Consensus 30 ~~~~~i~~l~~~i~~a~~ivvlTGAGiSt~SGIPdFR~~~~Glw~~-~~p~~~~~~~~f~~~p~~~w~~~~~~~~----~ 104 (290)
T 3u31_A 30 TQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSK-YDPRIYGTIWGFWKYPEKIWEVIRDISS----D 104 (290)
T ss_dssp CEEECHHHHHHHHHTCSSEEEEECGGGTGGGTCCSCTTCTTSGGGG-SCHHHHTBHHHHHHCHHHHHHHHHHHHH----H
T ss_pred hhHHHHHHHHHHHHhCCCEEEEeCCccccccCCccccccccchhhc-CCHHHhhCHHhhhhCHHHHHHHHHHHhh----h
Confidence 44678999999999999999999999999999999999 7899974 6653 566788888877777654332 2
Q ss_pred ccCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHH
Q 015613 183 MAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAI 261 (403)
Q Consensus 183 ~~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~ 261 (403)
.+++||++|++|++|+++|++++||||||||||++||+++ +|+||+++.++|.+|++.|+.+....
T Consensus 105 ~~a~Pn~~H~aLa~Le~~g~~~~viTQNVDgLh~rAG~~~vielHGs~~~~~C~~C~~~~~~~~~~~------------- 171 (290)
T 3u31_A 105 YEIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKVISLHGNVFEAVCCTCNKIVKLNKIML------------- 171 (290)
T ss_dssp SCCCCCHHHHHHHHHHHTTCEEEEEESCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEECCTGGG-------------
T ss_pred ccCCCCHHHHHHHHHHHcCCCceEEEechHHHHHHcCCCcEEEecCCcCcceeCCCCCcCChhHhhh-------------
Confidence 5899999999999999999999999999999999999988 99999999999999999887543210
Q ss_pred hhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEc
Q 015613 262 ESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLG 341 (403)
Q Consensus 262 ~~l~~g~p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVG 341 (403)
.+ ... .....+|+|| |||+|||+||||||.+|++.++++.+++++||++||||
T Consensus 172 -------------------~~-~~~------~~~~~~P~C~-Cgg~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviG 224 (290)
T 3u31_A 172 -------------------QK-TSH------FMHQLPPECP-CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIG 224 (290)
T ss_dssp -------------------ST-TSS------TTTSSSCBCT-TSCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEES
T ss_pred -------------------cc-ccc------ccccCCCCCC-CCCEECCeEEEcCCCCCHHHHHHHHHHHhcCCEEEEEC
Confidence 00 000 0123589999 99999999999999999999999999999999999999
Q ss_pred cCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC-cccEEEECcHHHHHHH
Q 015613 342 SSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKISARLGEILPR 391 (403)
Q Consensus 342 TSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~-~~~l~I~~~~~evL~~ 391 (403)
|||+|+|+++|+..++++|+++|+||+++|+.++ .+++.|+++|+++++.
T Consensus 225 TSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~~~~~~d~~i~g~a~~vl~~ 275 (290)
T 3u31_A 225 TSSTVSTATNLCHFACKKKKKIVEINISKTYITNKMSDYHVCAKFSELTKV 275 (290)
T ss_dssp CCSCSHHHHHHHHHHHHTTCCEEEEESSCCTTTTTTCSEEEESCGGGHHHH
T ss_pred cCCcchhHHHHHHHHHHcCCEEEEECCCCCCCCCccceEEEECCHHHHHHH
Confidence 9999999999999998899999999999999985 6899999999999863
No 6
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=100.00 E-value=9.6e-60 Score=461.05 Aligned_cols=244 Identities=24% Similarity=0.426 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHHc--CCcEEEEeCCCCCccCCCCCcCCCC-CcccCC--CC---C---cChHHHhhChhHHHHHHHHHHh
Q 015613 109 IEDINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSPN-GAYSSG--FK---P---ITHQQFVRSSRARRRYWARSYA 177 (403)
Q Consensus 109 ~~~l~~l~~~l~~--ak~IVVlTGAGIStsSGIPdFRs~~-Gly~~~--~~---p---~~~~~f~~~~~~~~~fw~~~~~ 177 (403)
.+++++++++|++ |++|||+|||||||+||||||||++ |+|... +. | ++.+.|..+|..+|.||.+.|
T Consensus 5 ~~~i~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~~e~~~~~~~f~~~p~~f~~~~~~~~- 83 (289)
T 1q1a_A 5 EMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKELY- 83 (289)
T ss_dssp HHHHHHHHHHHHHSTTSCEEEEECGGGGGGGTCCCSSSTTTSGGGSCGGGCCSSGGGGGBHHHHHHCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCceeHhhCCCCcCCCCCcccccccccCCCCHHHhcCHHHHhcCHHHHHHHHHHHh-
Confidence 4679999999999 9999999999999999999999995 999852 21 2 355668888887777775432
Q ss_pred hhhccccCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCC--c-eeeccceeeEEcCCCCcccchhhHHHHHHhhC
Q 015613 178 GWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALN 254 (403)
Q Consensus 178 ~~~~~~~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~--~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~ 254 (403)
...++||.+|++|++|+++|++++||||||||||++||++ + +|+||+++.++|.+|++.|+.+.+...+..
T Consensus 84 ----~~~a~Pn~~H~~La~L~~~g~~~~viTQNVDgLh~~AG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~-- 157 (289)
T 1q1a_A 84 ----PGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAE-- 157 (289)
T ss_dssp ----SSSCCCCHHHHHHHHHHHTTCEEEEEECCSSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECHHHHHHHHTC--
T ss_pred ----hCcCCCCHHHHHHHHHHhCCCccEEEecCccchHHHcCCCcccEEEecCCcCceEECCCCCCCcHHHHHHHHhh--
Confidence 2479999999999999999999999999999999999996 3 999999999999999999987665443310
Q ss_pred hhHHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHH---HHH--
Q 015613 255 PKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADK---AME-- 329 (403)
Q Consensus 255 p~~~~~~~~l~~g~p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~---a~~-- 329 (403)
.....+|+||.|||+|||+||||||.+|++.++. +.+
T Consensus 158 --------------------------------------~~~~~~P~C~~Cgg~lrP~vv~FGE~lp~~~~~~~~~~~~~l 199 (289)
T 1q1a_A 158 --------------------------------------HPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWL 199 (289)
T ss_dssp --------------------------------------SSCCSCCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHH
T ss_pred --------------------------------------ccCCCCccCCCCCCEECCCEEEcCCCCCHHHHHHHHHhhhhh
Confidence 0112579999999999999999999999876443 333
Q ss_pred --------HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCC-C---CCcccEEEECcHHHHHHHHHHhCC
Q 015613 330 --------AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETR-A---DDLTTLKISARLGEILPRVLDVGS 397 (403)
Q Consensus 330 --------~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~-~---d~~~~l~I~~~~~evL~~L~~~~~ 397 (403)
.+++||++|||||||+|+|+++|+..++ .|+++|+||++++. + +..+++.|.++|+++|++|++.++
T Consensus 200 ~~~~~a~~~~~~~DlllviGTSl~V~Pa~~l~~~~~-~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~ 278 (289)
T 1q1a_A 200 REKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIP-RKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELG 278 (289)
T ss_dssp HHHHHC----CCCCEEEEESCCCCEETTTHHHHHSC-TTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHT
T ss_pred hhhhhHHHHhccCCEEEEEccCCChhhHHHHHHHHh-cCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcC
Confidence 3669999999999999999999998875 58999999999986 2 446899999999999999998876
Q ss_pred C
Q 015613 398 L 398 (403)
Q Consensus 398 ~ 398 (403)
+
T Consensus 279 ~ 279 (289)
T 1q1a_A 279 W 279 (289)
T ss_dssp C
T ss_pred C
Confidence 5
No 7
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-60 Score=475.27 Aligned_cols=277 Identities=24% Similarity=0.353 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCccCCCCCcCCCCCcccCC-----CCC---cChHHHhhChhHHHHHHHHHHhhhh
Q 015613 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSG-----FKP---ITHQQFVRSSRARRRYWARSYAGWR 180 (403)
Q Consensus 109 ~~~l~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~-----~~p---~~~~~f~~~~~~~~~fw~~~~~~~~ 180 (403)
.+++++|+++|++|++|||+|||||||+||||||||++|+|+.. +.| ++++.|..+|..+|.|| ...
T Consensus 33 ~~~i~~l~~~l~~a~~IvvlTGAGISt~SGIPdFR~~~Glw~~~~~~~l~~p~~~~~~~~F~~~P~~f~~~~-----~~~ 107 (354)
T 2hjh_A 33 FFTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIA-----NMV 107 (354)
T ss_dssp CCSHHHHHHHHHHCSSEEEEECGGGGGGGTCCCSSSTTSHHHHTGGGCCSSGGGGGBHHHHHHCTHHHHHHG-----GGG
T ss_pred HHHHHHHHHHHHhCCcEEEEECchhhHhhCCCcccCcchHHHHHHhhcCCCHHHhCCHHHHhcCHHHHHHHH-----HHH
Confidence 46899999999999999999999999999999999999999852 223 57788888888655443 111
Q ss_pred ccccCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCC--c-eeeccceeeEEcCCCCcccchhhHHHHHHhhC-hh
Q 015613 181 RFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALN-PK 256 (403)
Q Consensus 181 ~~~~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~--~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~-p~ 256 (403)
....++||++|++|++|+++|++++||||||||||++||++ + +|+||+++.++|.+|++.|+++.+++.+...+ |.
T Consensus 108 ~~~~~~Pn~~H~aLa~Le~~g~l~~viTQNVDgLh~rAG~~~~~vielHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~P~ 187 (354)
T 2hjh_A 108 LPPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPL 187 (354)
T ss_dssp CCCCSCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTEEEEEEEETTTCCEEEGGGGHHHHHTTCCCB
T ss_pred ccccCCCCHHHHHHHHHHHcCCceEEEecccCcHHHHcCCCccCEEEecCCcCccccCCCCCcCCHHHHHHHhhccCCCc
Confidence 12368899999999999999999999999999999999985 4 99999999999999999999888877665433 22
Q ss_pred HHHHHhhhcCCCCCCCCCcCcccCC-CCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCC
Q 015613 257 WAEAIESLDYGSPGSDRSFGMKQRP-DGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECD 335 (403)
Q Consensus 257 ~~~~~~~l~~g~p~~~~~~~~~~~p-d~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aD 335 (403)
+..|-..... ...+...+ .+|..+... . ....+.|..|||.|||+||||||.+|...++.+.+++++||
T Consensus 188 Cp~C~~~~~~-------~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~c~g~lrPdVV~FGE~lp~~~~~~a~~~~~~aD 257 (354)
T 2hjh_A 188 CPYCYKKRRE-------YFPEGYNNKVGVAASQGS--M-SERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECD 257 (354)
T ss_dssp CTTTHHHHHH-------HCCC--------------------CCTTSCTTTTBEEEEECCBTSBCCHHHHHHHHHHTTTCC
T ss_pred Cccccccccc-------cccccccccccccccccc--c-ccccccccccCCeeCCChhhccccCCHHHHHHHHHHHhhCC
Confidence 2111000000 00000000 012222221 0 12357899999999999999999999999999999999999
Q ss_pred eEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhCCCCCCC
Q 015613 336 AFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPA 402 (403)
Q Consensus 336 llLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~~~~~~~ 402 (403)
++|||||||+|+|+++++..+ +.++++|+||++++..+ .+++.|.++|+++|+.|++.++.+||.
T Consensus 258 llLviGTSL~V~Paa~lv~~~-~~~~~~v~IN~~~t~~~-~~dl~i~g~~~~vl~~L~~~lgw~~p~ 322 (354)
T 2hjh_A 258 LLICIGTSLKVAPVSEIVNMV-PSHVPQVLINRDPVKHA-EFDLSLLGYCDDIAAMVAQKCGWTIPH 322 (354)
T ss_dssp EEEEESCCCCEETGGGHHHHS-CTTSCEEEEESSCCTTS-CCSEEEESCHHHHHHHHHHHHTCCCCS
T ss_pred EEEEECcCCCchhHHHHHHHH-hcCCcEEEEcCCCCCCC-CcCEEEeCCHHHHHHHHHHHcCCCCch
Confidence 999999999999999999876 45889999999999864 589999999999999999999999984
No 8
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-59 Score=480.36 Aligned_cols=280 Identities=24% Similarity=0.353 Sum_probs=220.9
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCCccCCCCCcCCCCCcccCC-----CCC---cChHHHhhChhHHHHHHHHHHhh
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSG-----FKP---ITHQQFVRSSRARRRYWARSYAG 178 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~-----~~p---~~~~~f~~~~~~~~~fw~~~~~~ 178 (403)
+.++++++++++|++|++|||+|||||||+||||||||++|+|+.. ..| ++.+.|.++|..+|.+ +.
T Consensus 169 ~~~~~i~~l~~~L~~ak~IVVLTGAGISTeSGIPDFRs~~GLw~~~~~~gl~~Pe~v~s~~~F~~dP~~Fy~~-----~r 243 (492)
T 4iao_A 169 SNFFTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNI-----AN 243 (492)
T ss_dssp TTCCSHHHHHHHHHHCSCEEEEECGGGGGGGTCCCSSSTTSHHHHHHTSCCSCGGGGGBHHHHHHCHHHHHHH-----GG
T ss_pred hhHHHHHHHHHHHHhCCcEEEEeCcccccccCCccccCchHHHHhhhhcCCCCHHHhcCHHHHhhChHHHHHH-----HH
Confidence 3457899999999999999999999999999999999999999741 133 4678888888754332 22
Q ss_pred hhccccCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCC--c-eeeccceeeEEcCCCCcccchhhHHHHHHhhC-
Q 015613 179 WRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALN- 254 (403)
Q Consensus 179 ~~~~~~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~--~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~- 254 (403)
......++||++|++|++|+++|++.+||||||||||++||++ + +|+||+++.++|.+|++.++++.+.+.+...+
T Consensus 244 ~~~~~~~~Pn~aH~aLa~Le~~G~l~~VITQNIDgLHqrAG~~s~~ViELHGsl~~~~C~~Cg~~~~~e~i~~~i~~~~~ 323 (492)
T 4iao_A 244 MVLPPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLEL 323 (492)
T ss_dssp GGCCCSSCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTCCTTEEEETTTCCEEEGGGGHHHHHTTCC
T ss_pred HhhCCcCCCCHHHHHHHHHHHCCCCceeEeccccchHhhcCCChhhEEeecCccceeecCCCCCcCCHHHHHHHHhccCC
Confidence 2222367899999999999999999999999999999999985 3 99999999999999999999888776664333
Q ss_pred hhHHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhC
Q 015613 255 PKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKEC 334 (403)
Q Consensus 255 p~~~~~~~~l~~g~p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~a 334 (403)
|.|..|-+......|. ....++++.+.++. .....|.|+.|||.|||+||||||.+|.+.++.+.+.+++|
T Consensus 324 P~Cp~Cg~~~~~~~~~------~~~~~dg~~~~~~~---~~~~~~~c~~cgG~LRPdIVfFGE~LP~~~~~~a~~~~~~a 394 (492)
T 4iao_A 324 PLCPYCYKKRREYFPE------GYNNKVGVAASQGS---MSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILEC 394 (492)
T ss_dssp CBCTTTHHHHHHHSTT------CCCCC--------C---CTTCCTTCCTTTTBEEESSCCBTSBCCHHHHHHHHHHTTTC
T ss_pred CCCccccccccccccc------cccccccccccccc---ccccccccccCCCcCCCCEEECCCCCCHHHHHHHHHHHhhC
Confidence 2222111000000000 01234444443332 22357899999999999999999999999999999999999
Q ss_pred CeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhCCCCCCC
Q 015613 335 DAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPA 402 (403)
Q Consensus 335 DllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~~~~~~~ 402 (403)
|++|||||||+|+|+++|+..+. .++++|+||++++.. ..+|+.|.|+|+++++.|++.++.+||.
T Consensus 395 DLlLVIGTSL~VyPaA~Lv~~a~-~~~p~ViIN~ept~~-~~~Dl~l~G~cdevv~~L~~~LGw~ip~ 460 (492)
T 4iao_A 395 DLLICIGTSLKVAPVSEIVNMVP-SHVPQVLINRDPVKH-AEFDLSLLGYCDDIAAMVAQKCGWTIPH 460 (492)
T ss_dssp SEEEEESCCCCEETGGGHHHHSB-TTSCEEEEESSCCTT-SCCSEEEESCHHHHHHHHHHHTTCCCCS
T ss_pred CEEEEeccCCCccchhhHHHHHh-cCCcEEEEcCCCCCC-CCccEEEeCCHHHHHHHHHHHhCCCCCh
Confidence 99999999999999999998764 688999999999985 4579999999999999999999999995
No 9
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=100.00 E-value=1e-59 Score=459.25 Aligned_cols=238 Identities=26% Similarity=0.436 Sum_probs=202.3
Q ss_pred HHHHHHHHHHc--CCcEEEEeCCCCCccCCCCCcCCCC-CcccC--CCC---C---cChHHHhhChhHHHHHHHHHHhhh
Q 015613 111 DINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSPN-GAYSS--GFK---P---ITHQQFVRSSRARRRYWARSYAGW 179 (403)
Q Consensus 111 ~l~~l~~~l~~--ak~IVVlTGAGIStsSGIPdFRs~~-Gly~~--~~~---p---~~~~~f~~~~~~~~~fw~~~~~~~ 179 (403)
++++++++|++ |++|||+|||||||+||||||||++ |+|.. .+. | ++...|.++|..+|.||...|
T Consensus 10 ~l~~la~~i~~~~a~~IvvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~~~~~f~~~P~~f~~~~~~~~--- 86 (285)
T 3glr_A 10 SLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAKELY--- 86 (285)
T ss_dssp CHHHHHHHHHTTSCCCEEEEECGGGTGGGTCCCTTSSSSHHHHHHHTTCCSSGGGGGCHHHHHHCCHHHHHHHHHHS---
T ss_pred CHHHHHHHHHhcCCCeEEEEeCCccchhhCCCCcccCCCccccchhccCCCCHHHHhCHHHHhhCcHHHHHHHHHhh---
Confidence 68899999997 8999999999999999999999985 99974 221 2 245568888876666554322
Q ss_pred hccccCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCC--c-eeeccceeeEEcCCCCcccchhhHHHHHHhhChh
Q 015613 180 RRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPK 256 (403)
Q Consensus 180 ~~~~~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~--~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~ 256 (403)
...++||++|++|++|+++|++.+||||||||||++||++ + +|+||+++.++|.+|++.|+.+.+...+.
T Consensus 87 --~~~a~Pn~~H~~La~Le~~g~l~~viTQNIDgLh~rAG~~~~~VielHGs~~~~~C~~C~~~~~~~~~~~~i~----- 159 (285)
T 3glr_A 87 --PGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVM----- 159 (285)
T ss_dssp --TTSCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEEEGGGGHHHHH-----
T ss_pred --hccCCCCHHHHHHHHHHHcCCCceEEeeeecchHhhcCCCcccEEEecCCCCeEEECCCCCcCCHHHHHHHhh-----
Confidence 2478999999999999999999999999999999999985 3 99999999999999999988765532220
Q ss_pred HHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCe
Q 015613 257 WAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDA 336 (403)
Q Consensus 257 ~~~~~~~l~~g~p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDl 336 (403)
...+|+|+.|||+|||+||||||.+|.+.+ .+.+.+++||+
T Consensus 160 --------------------------------------~~~~P~C~~Cgg~lrP~IV~FGE~lp~~~~-~~~~~~~~aDl 200 (285)
T 3glr_A 160 --------------------------------------ADRVPRCPVCTGVVKPDIVFFGEPLPQRFL-LHVVDFPMADL 200 (285)
T ss_dssp --------------------------------------TTCCCBCTTTCCBEEEEECCTTSBCCGGGG-GHHHHHHHCSE
T ss_pred --------------------------------------cCCCCCCCCCCCccCCcEEEeCCcCCHHHH-HHHHHHhcCCE
Confidence 125799999999999999999999998766 45778899999
Q ss_pred EEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCC----CCCcccEEEECcHHHHHHHHHHhCCC
Q 015613 337 FLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETR----ADDLTTLKISARLGEILPRVLDVGSL 398 (403)
Q Consensus 337 lLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~----~d~~~~l~I~~~~~evL~~L~~~~~~ 398 (403)
+|||||||+|+|++.|+.++ +.++++++||++++. .+..+|+.+.|+|++++++|++.++.
T Consensus 201 llviGTSl~V~Paa~l~~~~-~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~~~~~~L~~~lgw 265 (285)
T 3glr_A 201 LLILGTSLEVEPFASLTEAV-RSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELLGW 265 (285)
T ss_dssp EEEESCCCCEETTGGGGGSS-CTTSCEEEEESSCCTHHHHSCCTTEEEEESCHHHHHHHHHHHHTC
T ss_pred EEEeCCCCccccHHHHHHHH-hCCCcEEEECCCCcCccccCCCCccEEEcCCHHHHHHHHHHHhCC
Confidence 99999999999999999764 467899999999985 46789999999999999999987753
No 10
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=100.00 E-value=1.1e-59 Score=448.17 Aligned_cols=225 Identities=28% Similarity=0.441 Sum_probs=188.6
Q ss_pred CCcEEEEeCCCCCccCCCCCcCCCCCcccCCCCC---cChHHHhhChhHHHHHHHHHHhhhhccccCCCCHHHHHHHHHH
Q 015613 122 SAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLE 198 (403)
Q Consensus 122 ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~p---~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn~~H~~La~L~ 198 (403)
|++|||+|||||||+||||||||++|+|.. +.| .+.+.|..+|..+|.||.+...... -..++||.+|++|++|+
T Consensus 1 a~~ivvltGAGiS~~SGIPdfR~~~Glw~~-~~~~~~~~~~~f~~~p~~~~~f~~~~~~~~~-~~~a~Pn~~H~~La~L~ 78 (235)
T 1s5p_A 1 KPRVLVLTGAGISAESGIRTFRAADGLWEE-HRVEDVATPEGFDRDPELVQAFYNARRRQLQ-QPEIQPNAAHLALAKLQ 78 (235)
T ss_dssp CCCEEEEECTHHHHTTTCCCCCSSSCEETT-EEHHHHSSHHHHHHCHHHHHHHHHHHHHHHT-STTCCCCHHHHHHHHHH
T ss_pred CCcEEEEechhhhhhhCCCCCCCCCCCccC-CCHhHcccHHHHhhCHHHHHHHHHHHHHHhh-hcCCCCCHHHHHHHHHH
Confidence 689999999999999999999999999974 555 4788899999999999875332111 13599999999999999
Q ss_pred H-hCCCceEEeccccchHHHhCCCc-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCcC
Q 015613 199 K-AGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFG 276 (403)
Q Consensus 199 ~-~gkl~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~~g~p~~~~~~~ 276 (403)
+ .|++.+||||||||||++||.++ +|+||++..++|.+|++.|+.+.
T Consensus 79 ~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~------------------------------- 127 (235)
T 1s5p_A 79 DALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTG------------------------------- 127 (235)
T ss_dssp HHHGGGEEEEESCCSSHHHHHTCCSCEETTEEEEEEEETTTCCEEECCS-------------------------------
T ss_pred HhhCCceEEEeccccchhhhcCCCcEEEecCCceEEEeCCCCCcccchh-------------------------------
Confidence 9 69999999999999999999888 99999999999999998775321
Q ss_pred cccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHH
Q 015613 277 MKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAA 356 (403)
Q Consensus 277 ~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a 356 (403)
+ ++ ...+|.|+.|||.|||+||||||. |. .++++.+++++||++|||||||+|+|+++|+..+
T Consensus 128 -------~--~~------~~~~p~c~~Cgg~lrP~vv~FGE~-p~-~~~~a~~~~~~adl~lviGTSl~V~Pa~~l~~~a 190 (235)
T 1s5p_A 128 -------D--VT------PEDKCHCCQFPAPLRPHVVWFGEM-PL-GMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEA 190 (235)
T ss_dssp -------C--CC------SSCCC-------CEEEEECCTTSC-CS-SHHHHHHHHHHCSEEEEESCCTTEETGGGHHHHH
T ss_pred -------h--cc------CCCCCCCCCCCCeecCcEEEeCCC-HH-HHHHHHHHHhcCCEEEEECcCCchhhHHHHHHHH
Confidence 0 11 125789999999999999999999 74 5889999999999999999999999999999999
Q ss_pred HhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhC
Q 015613 357 HEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 357 ~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~ 396 (403)
+++|+++|+||+++++.+..+++.|.++++++|++|++.+
T Consensus 191 ~~~g~~~i~iN~~~t~~~~~~~~~i~~~~~~~l~~l~~~l 230 (235)
T 1s5p_A 191 KLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKL 230 (235)
T ss_dssp HHTTCEEEEEESSSCC---CCSEEEESCHHHHHHHHHHHH
T ss_pred HHcCCeEEEEECCCCCCCccccEEEeCCHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999998753
No 11
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-60 Score=466.36 Aligned_cols=242 Identities=29% Similarity=0.501 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCccCCCCCcCCCCCcccCCCCCcChHHHhhChhHHHHHHHHHHhhhhccccCCCC
Q 015613 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPN 188 (403)
Q Consensus 109 ~~~l~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~p~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn 188 (403)
++++++|+++|++|++|||+|||||||+|||||||+++|+|... .+..+|. | ...+.+++||
T Consensus 31 ~~~i~~l~~~i~~a~~ivvlTGAGISteSGIPdFR~~~Glw~~~-------~~~~~p~----~-------~~~f~~a~Pn 92 (318)
T 3k35_A 31 ERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTME-------ERGLAPK----F-------DTTFESARPT 92 (318)
T ss_dssp HHHHHHHHHHHHHCSCEEEEECGGGSGGGTCCCSSSTTCHHHHH-------TTTCCCC----C-------SSCTTTCCCC
T ss_pred HHHHHHHHHHHHhCCCEEEEeccccChhhCCCccccCCCcchhh-------hccCCHH----H-------HHHhhhCCCC
Confidence 57899999999999999999999999999999999999999631 0111121 0 0123478999
Q ss_pred HHHHHHHHHHHhCCCceEEeccccchHHHhCCC--c-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhc
Q 015613 189 PAHFALASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLD 265 (403)
Q Consensus 189 ~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~--~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~ 265 (403)
.+|++|++|+++|++.+||||||||||++||++ + +|+||+++.++|.+|++.|+++.+...+
T Consensus 93 ~~H~aLa~Le~~g~~~~viTQNIDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~--------------- 157 (318)
T 3k35_A 93 QTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTM--------------- 157 (318)
T ss_dssp HHHHHHHHHHHTTCCCEEEECCCSCHHHHBTCCGGGEEETTCCTTEEEETTTCCEEECSSCCSCC---------------
T ss_pred HHHHHHHHHHHcCCceEEEEecccchHhhcCCCccCEEEeCCCCCeeEeCCCCCccchHHhhhhc---------------
Confidence 999999999999999999999999999999996 3 9999999999999999988764321000
Q ss_pred CCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcc
Q 015613 266 YGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLM 345 (403)
Q Consensus 266 ~g~p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~ 345 (403)
...++++ . + .....+.|+.|||.|||+||||||.+|.+.++++.+++++||++|||||||+
T Consensus 158 ------------~~~p~~~--~----C-~~~~~~~c~~CgG~LRPdVV~FGE~lP~~~~~~a~~~~~~aDllLViGTSL~ 218 (318)
T 3k35_A 158 ------------GLKATGR--L----C-TVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQ 218 (318)
T ss_dssp ------------SSCEEEE--E----C-CC--------CCCEEEECCCCTTCCCCHHHHHHHHHHHHTCSEEEEESCCCC
T ss_pred ------------ccCCCCC--c----C-cccccccccCcCCeeCCCEEEccCcCCHHHHHHHHHHHhcCCEEEEEccCCC
Confidence 0000000 0 0 0012345678999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhCCCCCCC
Q 015613 346 TMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPA 402 (403)
Q Consensus 346 V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~~~~~~~ 402 (403)
|+|+++|+..++++|+++++||+++|+.|..++++|+++++++|++|++.++++||+
T Consensus 219 V~Paa~l~~~a~~~G~~vviIN~~~t~~d~~adl~i~g~~~evl~~L~~~Lg~~iP~ 275 (318)
T 3k35_A 219 IRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPA 275 (318)
T ss_dssp STTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTCCCCC
T ss_pred chhhhhhHHHHHhcCCEEEEECCCCCCCCCcccEEEeCCHHHHHHHHHHHhCCCCCC
Confidence 999999999998999999999999999999999999999999999999999999996
No 12
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=100.00 E-value=1e-58 Score=465.62 Aligned_cols=246 Identities=24% Similarity=0.418 Sum_probs=192.4
Q ss_pred CCHHHHHHHHHHHHc--CCcEEEEeCCCCCccCCCCCcCCCC-CcccCC--CC---C---cChHHHhhChhHHHHHHHHH
Q 015613 107 PSIEDINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSPN-GAYSSG--FK---P---ITHQQFVRSSRARRRYWARS 175 (403)
Q Consensus 107 p~~~~l~~l~~~l~~--ak~IVVlTGAGIStsSGIPdFRs~~-Gly~~~--~~---p---~~~~~f~~~~~~~~~fw~~~ 175 (403)
+...++++|+++|++ |++|||+|||||||+||||||||++ |+|... +. | ++...|..+|..+|.||.+.
T Consensus 11 ~~~~~i~~l~~~i~~~~a~~IVvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~s~~~f~~~P~~f~~~~~~~ 90 (361)
T 1q14_A 11 STEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 90 (361)
T ss_dssp CHHHHHHHHHHHHHTSTTCCEEEEECGGGTGGGC--------------CCCCCCSSGGGGGBHHHHHHCCHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHhccCCcEEEEeCcccchhcCCcccccCcchhhhcccccCCCCHHHhcCHHHHhcCHHHHHHHHHHH
Confidence 335689999999999 9999999999999999999999995 999752 21 2 34566888888666665321
Q ss_pred HhhhhccccCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCC--c-eeeccceeeEEcCCCCcccchhhHHHHHHh
Q 015613 176 YAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKA 252 (403)
Q Consensus 176 ~~~~~~~~~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~--~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~ 252 (403)
....++||.+|++|++|+++|++++||||||||||++||++ + +|+||+++.++|.+|++.|+.+.+...+.
T Consensus 91 -----~~~~a~Pn~~H~aLa~Le~~g~~~~ViTQNVDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~~- 164 (361)
T 1q14_A 91 -----YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLA- 164 (361)
T ss_dssp -----SCCCCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECTHHHHHHTT-
T ss_pred -----hhCcCCCCHHHHHHHHHHhcCCCcEEEecccchhHhHcCCCcceEEeccccccccCcCCCCccCcHHHHHHHHh-
Confidence 23479999999999999999999999999999999999997 3 99999999999999999988765543220
Q ss_pred hChhHHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHH---
Q 015613 253 LNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAME--- 329 (403)
Q Consensus 253 ~~p~~~~~~~~l~~g~p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~--- 329 (403)
. .....+|+||.|||+|||+||||||.+|...++.+.+
T Consensus 165 ------------------------------------~---~~~~~~P~Cp~Cgg~lrP~VV~FGE~lp~~~~~~~~~a~~ 205 (361)
T 1q14_A 165 ------------------------------------E---HPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSE 205 (361)
T ss_dssp ------------------------------------S---SSCSCCCBCTTTCCBEEEEECCBTSCCCHHHHHHHHHHHH
T ss_pred ------------------------------------h---cccCCCCCCcCCCCEeCCCcccccccCCHHHHHHHHHHHH
Confidence 0 0012579999999999999999999999987665554
Q ss_pred ----------HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCC----CCCcccEEEECcHHHHHHHHHHh
Q 015613 330 ----------AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETR----ADDLTTLKISARLGEILPRVLDV 395 (403)
Q Consensus 330 ----------~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~----~d~~~~l~I~~~~~evL~~L~~~ 395 (403)
.+.+||++|||||||+|+|+++|+..++ .|+++|+||++++. .+..+++.|.++|+++|++|++.
T Consensus 206 ~l~~~i~~~~~~~~aDllLviGTSl~V~Paa~l~~~~~-~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~ 284 (361)
T 1q14_A 206 WLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIP-RKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEE 284 (361)
T ss_dssp HHHHC--------CCCEEEEESCCCCSTTGGGHHHHSC-TTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHH
T ss_pred hhhhcchhhhhhccCCEEEEECCCCCchhHHHHHHHHh-cCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHH
Confidence 4669999999999999999999998875 58999999999985 24568999999999999999987
Q ss_pred CCC
Q 015613 396 GSL 398 (403)
Q Consensus 396 ~~~ 398 (403)
++.
T Consensus 285 Lg~ 287 (361)
T 1q14_A 285 LGW 287 (361)
T ss_dssp HTC
T ss_pred cCC
Confidence 764
No 13
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=100.00 E-value=2.6e-58 Score=457.10 Aligned_cols=240 Identities=25% Similarity=0.438 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHc--CCcEEEEeCCCCCccCCCCCcCCCC-CcccCC--CC---C---cChHHHhhChhHHHHHHHHHHhh
Q 015613 110 EDINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSPN-GAYSSG--FK---P---ITHQQFVRSSRARRRYWARSYAG 178 (403)
Q Consensus 110 ~~l~~l~~~l~~--ak~IVVlTGAGIStsSGIPdFRs~~-Gly~~~--~~---p---~~~~~f~~~~~~~~~fw~~~~~~ 178 (403)
.++++++++|++ |++|||+|||||||+||||||||++ |+|... |. | ++...|.++|..+|.||...+
T Consensus 29 ~~l~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~p~~~~~~~~f~~~p~~f~~~~r~~~-- 106 (323)
T 1j8f_A 29 LTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKELY-- 106 (323)
T ss_dssp SSHHHHHHHHHSTTCCCEEEEECGGGTGGGTCCCTTCSCSTTSTTTTTTCCSSGGGGGBHHHHHHCCHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHhcCCCcEEEEecchhhHhhCCCcccCCCccHHHHhhhcCCCCHHHHcCHHHHhcCHHHHHHHHHHHh--
Confidence 468999999997 8999999999999999999999994 999852 21 2 255668888887777663222
Q ss_pred hhccccCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCCc---eeeccceeeEEcCC--CCcccchhhHHHHHHhh
Q 015613 179 WRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVCLD--CGFSFCRDLFQDQVKAL 253 (403)
Q Consensus 179 ~~~~~~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~---ielHGs~~~~~C~~--C~~~~~~~~~~~~l~~~ 253 (403)
...++||.+|++|++|+++|++++||||||||||++||++. +|+||+++.++|.+ |++.|+++.+.+.+.
T Consensus 107 ---~~~a~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~~AG~~~~~VielHGs~~~~~C~~~~C~~~~~~~~~~~~i~-- 181 (323)
T 1j8f_A 107 ---PGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIF-- 181 (323)
T ss_dssp ---SSSCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEESCTTTCCEECHHHHHHHHH--
T ss_pred ---hCcCCCCHHHHHHHHHHhcCCCcEEEeecccchHHHcCCCcccEEEeeCCcceeecCCCccCccccHHHHHHhhc--
Confidence 24799999999999999999999999999999999999853 99999999999999 999887654432220
Q ss_pred ChhHHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhh
Q 015613 254 NPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKE 333 (403)
Q Consensus 254 ~p~~~~~~~~l~~g~p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~ 333 (403)
...+|+||.|||+|||+||||||.+|++.++.+.+++++
T Consensus 182 -----------------------------------------~~~~P~C~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~ 220 (323)
T 1j8f_A 182 -----------------------------------------SEVTPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFLK 220 (323)
T ss_dssp -----------------------------------------TTCCCBCTTTCCBEEEEECCBTSCCCHHHHHHHHHGGGS
T ss_pred -----------------------------------------cCCCCCCcCCCCccCCCEEecCCcCCHHHHHHHHHHHhC
Confidence 125899999999999999999999999999999999999
Q ss_pred CCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--------------------cccEEEECcHHHHHHHHH
Q 015613 334 CDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--------------------LTTLKISARLGEILPRVL 393 (403)
Q Consensus 334 aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--------------------~~~l~I~~~~~evL~~L~ 393 (403)
||++|||||||+|+|+++|+..+++ +.++++||++++..++ .+++.|.++|+++|++|+
T Consensus 221 aDlllviGTSl~V~P~a~l~~~~~~-~~~~v~IN~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~gd~~~~l~~L~ 299 (323)
T 1j8f_A 221 VDLLLVMGTSLQVQPFASLISKAPL-STPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECDQGCLALA 299 (323)
T ss_dssp CSEEEEESSCSCSHHHHHHHTTSCT-TCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTCCSEEEEESCHHHHHHHHH
T ss_pred CCEEEEEeeCcccHHHHHHHHHHHc-CCcEEEEeCCCCCCCcccccccccccccccccccccceeEEEeCCHHHHHHHHH
Confidence 9999999999999999999988764 4567899999998765 378999999999999999
Q ss_pred HhCCC
Q 015613 394 DVGSL 398 (403)
Q Consensus 394 ~~~~~ 398 (403)
+.++.
T Consensus 300 ~~lgw 304 (323)
T 1j8f_A 300 ELLGW 304 (323)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 98864
No 14
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=100.00 E-value=6.6e-59 Score=462.54 Aligned_cols=242 Identities=29% Similarity=0.490 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCccCCCCCcCCCCCcccCCCCCcChHHHhhChhHHHHHHHHHHhhhhccccCCCC
Q 015613 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPN 188 (403)
Q Consensus 109 ~~~l~~l~~~l~~ak~IVVlTGAGIStsSGIPdFRs~~Gly~~~~~p~~~~~f~~~~~~~~~fw~~~~~~~~~~~~a~Pn 188 (403)
++++++|+++|++|++|||+|||||||+|||||||+++|+|... .+..+|. | ...+.+++||
T Consensus 31 ~~~i~~la~~i~~a~~iVvlTGAGISteSGIPDFR~~~Glw~~~-------~~~~~p~----~-------~~~f~~a~Pn 92 (355)
T 3pki_A 31 ERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTME-------ERGLAPK----F-------DTTFESARPT 92 (355)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGSGGGTCCCSSSTTCHHHHH-------HTTCCCC----C-------SSCTTTCCCC
T ss_pred HHHHHHHHHHHHhCCCEEEEeccccchhhCCCccccCCCccchh-------hccCChH----H-------HHHHhhCCCC
Confidence 57899999999999999999999999999999999999999631 0011111 0 0123478999
Q ss_pred HHHHHHHHHHHhCCCceEEeccccchHHHhCCC--c-eeeccceeeEEcCCCCcccchhhHHHHHHhhChhHHHHHhhhc
Q 015613 189 PAHFALASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLD 265 (403)
Q Consensus 189 ~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~--~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~~p~~~~~~~~l~ 265 (403)
.+|++|++|+++|++.+||||||||||++||++ + +|+||+++.++|.+|++.|.++.+...+
T Consensus 93 ~~H~aLa~Le~~g~l~~viTQNIDgLh~rAG~~~~~VieLHGsl~~~~C~~C~~~~~~~~~~~~~--------------- 157 (355)
T 3pki_A 93 QTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTM--------------- 157 (355)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCCSCHHHHEEEEGGGEEETTCCTTEEEETTTCCEEEBSSCCSCC---------------
T ss_pred HHHHHHHHHHHcCCCcEEEEecccchHhhcCCCcccEEEeCCCCCceeeCCCCCccchHHhhhhc---------------
Confidence 999999999999999999999999999999994 4 9999999999999999988764321000
Q ss_pred CCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHhhCCeEEEEccCcc
Q 015613 266 YGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLM 345 (403)
Q Consensus 266 ~g~p~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~~aDllLVVGTSL~ 345 (403)
...++ ... + .....+.|+.|||.|||+||||||.+|.+.++.+.+++++||++|||||||+
T Consensus 158 ------------~~~~~--~~~----C-~~~~~~~~~~CgG~LRPdVV~FGE~lP~~~~~~A~~~~~~aDllLViGTSL~ 218 (355)
T 3pki_A 158 ------------GLKAT--GRL----C-TVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQ 218 (355)
T ss_dssp ------------SSCEE--EEE----C-CCCCBTTBCCCCCEEEECCCCTTSCCCHHHHHHHHHHHHHCSEEEEESCCCC
T ss_pred ------------ccCCC--CCc----c-ccccccccccCCCccCCCEEECCCcCCHHHHHHHHHHHhcCCEEEEEeeCCC
Confidence 00000 000 0 0012345789999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhCCCCCCC
Q 015613 346 TMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPA 402 (403)
Q Consensus 346 V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~~~~~~~ 402 (403)
|+|+++|+..+.++|+++++||+++|+.|..++++|+++|+++|++|++.++++||+
T Consensus 219 V~Paa~Lp~~a~~~G~~vviIN~~pT~~d~~adl~i~g~a~evl~~L~~~Lg~~iP~ 275 (355)
T 3pki_A 219 IRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLGLEIPA 275 (355)
T ss_dssp STTGGGTTHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHTTCCCCC
T ss_pred chhhhhhHHHHHhcCCEEEEECCCCCCCCCccCEEEeCCHHHHHHHHHHHhCCCCCC
Confidence 999999999998899999999999999999999999999999999999999999996
No 15
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=91.99 E-value=0.34 Score=50.62 Aligned_cols=66 Identities=12% Similarity=0.027 Sum_probs=50.5
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 329 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
..+.+||+||.+|+.+...+...+... ..++++|.|+.++...+. ..++.|.+|+.++|..|++.+
T Consensus 285 ~~~~~aDlvl~~G~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 352 (578)
T 3lq1_A 285 IDKLTPEVVIRFGSMPVSKPLKNWLEQ--LSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNM 352 (578)
T ss_dssp HHHTCCSEEEEESSCCSCHHHHHHHHH--CCSSEEEEECTTCCCCCTTCCCSEEECSCHHHHHHHHHHHS
T ss_pred cccCCCCEEEEeCCcccchhHHHHHhc--CCCCEEEEECCCCCcCCCCcCceEEEEeCHHHHHHHHHhhc
Confidence 457799999999997755444444322 246889999999877664 477899999999999998754
No 16
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=91.09 E-value=0.47 Score=49.49 Aligned_cols=67 Identities=4% Similarity=-0.027 Sum_probs=51.0
Q ss_pred HHHHHhhCCeEEEEccC-cchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 327 AMEAAKECDAFLVLGSS-LMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 327 a~~~~~~aDllLVVGTS-L~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
+.+.++++|+||++|+. +.-.....+. ...++++|.|+.++...+. ..++.|.+|+.++|..|.+.+
T Consensus 281 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 350 (573)
T 2iht_A 281 LQTMFAPVDLVLTVGYDYAEDLRPSMWQ---KGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETAT 350 (573)
T ss_dssp HHHHHTTCCEEEEETCCGGGCCCHHHHC---CSSCCEEEEEESSCCSCTTTCCCSEEEESCHHHHHHHHHHHT
T ss_pred HHHHHhhCCEEEEECCCccccccccccC---CCCCCeEEEEeCCHHHhCCCcCCCeeEeCCHHHHHHHHHHhc
Confidence 45667899999999998 7543333332 1146789999999887765 468899999999999998754
No 17
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=90.80 E-value=0.44 Score=49.51 Aligned_cols=66 Identities=21% Similarity=0.162 Sum_probs=49.3
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHH
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVL 393 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~ 393 (403)
.+.+.+++||+||++|+.+.-.+...+.... ...++|.|+.++...+. ..++.|.+|+.++|..|.
T Consensus 271 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~--~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~ 338 (556)
T 3hww_A 271 KATSELQQAQIVVQLGSSLTGKRLLQWQASC--EPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHP 338 (556)
T ss_dssp HHHHHHTTCSEEEEESBCCCCHHHHHHHHHC--CCSEEEEEESSCSCCCTTCCSEEEEESCHHHHHHHSC
T ss_pred hhhhcccCCCEEEEcCCCcccHHHHHHHhcC--CCCeEEEECCCCccCCCCCCceEEEEcCHHHHHHhcc
Confidence 4566788999999999999654444443322 23489999999887765 467889999999998764
No 18
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=90.49 E-value=0.17 Score=52.81 Aligned_cols=69 Identities=9% Similarity=0.101 Sum_probs=48.3
Q ss_pred HHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 328 MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.++++|+||++|+.+.-.............++++|.|+.++...+. ..++.|.+|+.++|..|++.+
T Consensus 267 ~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 337 (568)
T 2c31_A 267 AFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKAL 337 (568)
T ss_dssp HHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHH
T ss_pred HhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhcCCcCCCceeeCCHHHHHHHHHHhh
Confidence 356789999999999885322111000111137789999998877655 467889999999999998754
No 19
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=90.38 E-value=0.5 Score=49.25 Aligned_cols=66 Identities=9% Similarity=0.104 Sum_probs=49.6
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
+.+.++++|++|++|+.+.......+. ..++++|.|+.++...+. ..++.|.+|+.++|..|.+.+
T Consensus 268 ~~~~l~~aDlvl~lG~~~~~~~~~~~~----~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 335 (566)
T 1ozh_A 268 GDRLLQLADLVICIGYSPVEYEPAMWN----SGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNI 335 (566)
T ss_dssp HHHHHHHCSEEEEESCCGGGSCGGGTC----CSCSEEEEEESSCCCCBTTBCCSEEEESCHHHHHHHHHHTC
T ss_pred HHHHHHhCCEEEEECCCCCcCCccccC----CCCCcEEEEeCCHHHhCCCCCCCEEEEeCHHHHHHHHHHhc
Confidence 345678899999999965433322221 236799999999887765 468899999999999998765
No 20
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=90.27 E-value=0.74 Score=48.35 Aligned_cols=66 Identities=6% Similarity=0.076 Sum_probs=49.2
Q ss_pred HHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 328 MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.++ +|+||++|+.+.......+.... .+.++|.|+.++...+. ..++.|.+|+.++|..|++.+
T Consensus 305 ~~~~~-~Dlvl~iG~~~~~~~~~~~~~~~--~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 372 (604)
T 2x7j_A 305 KRKLR-PDVVIRFGPMPVSKPVFLWLKDD--PTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGL 372 (604)
T ss_dssp HHHHC-CSEEEEESSCCSCHHHHHHHHHC--TTSEEEEECTTCCCCCTTSCCSEEECSCHHHHHHHHHHTS
T ss_pred hhhcC-CCEEEEECCcCccHHHHHHHhhC--CCCeEEEECCCCCccCCCccceEEEEcCHHHHHHHHHHhh
Confidence 34455 89999999988554333333221 16789999999987765 467899999999999998865
No 21
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=89.81 E-value=0.35 Score=50.62 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=49.0
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHh
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDV 395 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~ 395 (403)
.+.+.++++|+||++|+.+.......+-.. ..+.++|.|+.++...+. ..++.|.+|+.++|.+|.+.
T Consensus 271 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~ 340 (590)
T 1ybh_A 271 YANYAVEHSDLLLAFGVRFDDRVTGKLEAF--ASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKV 340 (590)
T ss_dssp HHHHHHHHCSEEEEESCCCCHHHHSSGGGT--TTTSEEEEEESCTTTTTSSSCCSEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCccccc--CCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHh
Confidence 345677899999999998843211111111 136789999999887765 56889999999999998754
No 22
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=89.77 E-value=0.56 Score=48.61 Aligned_cols=63 Identities=10% Similarity=0.204 Sum_probs=49.0
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
+.+.++++|+||++|+.+....+ ...++++|.|+.++...+. ..++.|.+|+.++|..|++.+
T Consensus 259 ~~~~~~~aDlvl~iG~~~~~~~~-------~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 323 (549)
T 3eya_A 259 GFHTMMNADTLVLLGTQFPYRAF-------YPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLV 323 (549)
T ss_dssp HHHHHHHCSEEEEESCCCCCGGG-------SCSSSEEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHGGGS
T ss_pred HHHHHHhCCEEEEECCCCCcccc-------CCCCCeEEEEeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHhc
Confidence 44667899999999998853321 1246789999999887654 467889999999999998765
No 23
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=89.43 E-value=0.63 Score=48.89 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=50.5
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 397 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~~ 397 (403)
+.+.+++||+||++|+.+....+ ... ...++++|.|+.++...+. ..++.|.+|+.++|..|++.+.
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~~~---~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 338 (603)
T 4feg_A 270 ANEALAQADVVLFVGNNYPFAEV---SKA-FKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVS 338 (603)
T ss_dssp HHHHHHHCSEEEEESCCCTTTTT---TTT-TTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHTCC
T ss_pred HHHHHHhCCEEEEECCCCCcccc---ccc-CCCCCeEEEEeCCHHHhCCccCCCEEEEeCHHHHHHHHHHhhh
Confidence 45667899999999998863221 111 1236789999999887764 4678999999999999988654
No 24
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=88.97 E-value=0.3 Score=50.80 Aligned_cols=66 Identities=12% Similarity=0.165 Sum_probs=47.4
Q ss_pred HHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHh
Q 015613 328 MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDV 395 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~ 395 (403)
.+.++++|+||++|+.+.-...... ... ..++++|.|+.++...+. ..++.|.+|+.++|..|++.
T Consensus 265 ~~~l~~aDlvl~iG~~~~~~~~~~~-~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~ 332 (564)
T 2q28_A 265 SFALANADVVMLVGARLNWLLAHGK-KGW-AADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAE 332 (564)
T ss_dssp HHHHHHCSEEEEESCCCSGGGGGGT-TTS-CTTCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHH
T ss_pred HhHhhcCCEEEEECCcccccccccc-ccc-CCCCeEEEEeCCHHHhcCCCCCCeEEEcCHHHHHHHHHHH
Confidence 4567899999999998853221110 111 136789999998877654 46788999999999998764
No 25
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=88.56 E-value=0.36 Score=50.55 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=49.5
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
+.+.++++|+||++|+.+...... + ... ..++++|.|+.++...+. ..++.|.+|+.++|..|.+.+
T Consensus 265 ~~~~l~~aDlvl~iG~~~~~~~~~-~-~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 333 (589)
T 2pgn_A 265 ANDMMAAADFVLVLGSRLSDWGIA-Q-GYI-TKMPKFVHVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVL 333 (589)
T ss_dssp HHHHHHHCSEEEEESCCCCTTTTT-T-TTT-CCCCSEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHHHHG
T ss_pred HHHHHhhCCEEEEECCCccccccc-c-ccc-CCCCeEEEEeCCHHHHCCCcCCCEEEEeCHHHHHHHHHHHh
Confidence 455678899999999987543322 1 111 136789999999877665 468899999999999998754
No 26
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=88.24 E-value=0.73 Score=48.43 Aligned_cols=67 Identities=13% Similarity=0.192 Sum_probs=47.9
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHh
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDV 395 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~ 395 (403)
+.+.++++|+||+||+.+.-.....+-... .+.++|.|+.++...+. ..++.|.+|+.++|..|++.
T Consensus 287 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~--~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~ 355 (616)
T 2pan_A 287 GNATLLASDMVFGIGNRFANRHTGSVEKYT--EGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEV 355 (616)
T ss_dssp HHHHHHHCSEEEEESCCCCHHHHSSHHHHH--TTCEEEEEESCGGGTTSSSCCSSCEECCHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEECCCCcccccCcccccC--CCCeEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHH
Confidence 455678999999999987532111111112 36789999999876655 45788999999999998764
No 27
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=86.86 E-value=1.4 Score=46.12 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=50.2
Q ss_pred HHHHHHhhCCeEEEEccCcchhhH-HHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSA-YRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 397 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~-~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~~ 397 (403)
.+.+.++++|+||++|+.+..... ... . .+.++|.|+.++...+. ..++.|.+|+.++|..|.+.+.
T Consensus 262 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~--~---~~~~~i~id~d~~~~~~~~~~~~~i~gd~~~~l~~L~~~l~ 331 (590)
T 1v5e_A 262 PANETILEADTVLFAGSNFPFSEVEGTF--R---NVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVD 331 (590)
T ss_dssp HHHHHHHHCSEEEEESCCCTTTTTTTTT--T---TCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHSC
T ss_pred HHHHHHHhCCEEEEECCCCcchhccccC--C---CCCeEEEEeCCHHHHCCCcCCCeEEEcCHHHHHHHHHHhhc
Confidence 445677899999999998854431 001 1 26789999999877665 4678999999999999987653
No 28
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=83.92 E-value=1.8 Score=46.24 Aligned_cols=69 Identities=13% Similarity=0.162 Sum_probs=47.8
Q ss_pred HHHHhhCCeEEEEccCcch---hhHHHHHHHHH----hCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 328 MEAAKECDAFLVLGSSLMT---MSAYRLVRAAH----EAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V---~p~~~lv~~a~----~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+++||+||.||+.+.- .....+...++ +....+|.|+.++...+. ..++.|.+|+..+|..|++.+
T Consensus 351 ~~~l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~~~~iI~idid~~~~~~~~~~~~~i~gD~~~~l~~L~~~l 428 (677)
T 1t9b_A 351 NLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKI 428 (677)
T ss_dssp HHHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCGGGSSSSSCCSEEEESCHHHHHHHHHTTS
T ss_pred HHHHhcCCEEEEECCccCcccccCccccCcccccccccCCceEEEEECCHHHhCCcccCCEEEeCCHHHHHHHHHHHh
Confidence 3567899999999998742 11112222221 223448899988877655 467899999999999998765
No 29
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=83.45 E-value=2.1 Score=41.68 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=45.9
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCC-CCCCcccEEEECcHHHHHHHHHHhC
Q 015613 333 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 333 ~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t-~~d~~~~l~I~~~~~evL~~L~~~~ 396 (403)
.|+|.|-+|.|-.+.=..-+ +.-..+|-||.++. ++-+.+|+-|-+|+-+++|+|.+.+
T Consensus 259 P~~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~vvP~L~~~l 318 (320)
T 1o97_D 259 SCKLYVAMGISGSIQHMAGM-----KHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQL 318 (320)
T ss_dssp TCSEEEEESCCCCHHHHHHH-----TTCSEEEEECSCTTCGGGGTCSEEECSCHHHHHHHHHHHC
T ss_pred ccceEEEEeccCcHHHHhhc-----ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHHHH
Confidence 35999999999887533333 22345778999874 5667999999999999999999865
No 30
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=81.08 E-value=0.61 Score=48.46 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=47.7
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 015613 331 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 331 ~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~--~~~l~I~~~~~evL~~L~~~~ 396 (403)
++++|++|++|+.+.-.....+-.. ...+.++|.|+.++...+. ..++.|.+|+.++|..|.+.+
T Consensus 267 ~~~aDlvl~iG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 333 (563)
T 2uz1_A 267 DAAPDLVLMLGARFGLNTGHGSGQL-IPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQAT 333 (563)
T ss_dssp TCCCSEEEEESCCSSGGGTTTSCSS-SCTTSEEEEECSCGGGTTSSSCCSEEECSCHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCccccccccccc-CCCCCeEEEEECCHHHhCCCCCCCeEEEcCHHHHHHHHHHhh
Confidence 6889999999998765432111101 1116789999999877765 568899999999999998644
No 31
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=79.38 E-value=0.76 Score=40.20 Aligned_cols=12 Identities=42% Similarity=1.071 Sum_probs=9.9
Q ss_pred eEEcCCCCcccc
Q 015613 231 TVVCLDCGFSFC 242 (403)
Q Consensus 231 ~~~C~~C~~~~~ 242 (403)
..+|..|++.|.
T Consensus 132 ~y~C~~Cg~~~~ 143 (165)
T 2lcq_A 132 RYVCIGCGRKFS 143 (165)
T ss_dssp CEEESSSCCEES
T ss_pred EEECCCCCCccc
Confidence 469999998874
No 32
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=78.80 E-value=0.78 Score=41.40 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=11.5
Q ss_pred eeeEEcCCCCcccc
Q 015613 229 VYTVVCLDCGFSFC 242 (403)
Q Consensus 229 ~~~~~C~~C~~~~~ 242 (403)
...++|..||+.|.
T Consensus 153 ~~~~~C~~CG~~~~ 166 (191)
T 1lko_A 153 ATKWRCRNCGYVHE 166 (191)
T ss_dssp EEEEEETTTCCEEE
T ss_pred CceEEECCCCCEee
Confidence 44789999999875
No 33
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=76.96 E-value=0.84 Score=46.94 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=49.1
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCC-cccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~-~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.++++|++|++|+.+.......+.... ..++++|.|+.++...+. ..++.|.+|+.++|..|.+.+
T Consensus 259 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~~ 329 (528)
T 1q6z_A 259 AISQLLEGHDVVLVIGAPVFRYHQYDPGQYL-KPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLV 329 (528)
T ss_dssp HHHHHHTTCSEEEEESSCTTCCCSCCCSCSS-CTTCEEEEEESCHHHHHHCSSSEEEESCHHHHHHHHHHHS
T ss_pred HHHHHHhcCCEEEEECCCCccccccCcCCcC-CCCCeEEEEeCCHHHhCCCCCCeeEeCCHHHHHHHHHHHh
Confidence 4556788999999999977544322111101 136789999988754321 567889999999999998754
No 34
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=73.99 E-value=3.4 Score=32.49 Aligned_cols=29 Identities=28% Similarity=0.714 Sum_probs=22.5
Q ss_pred CCCCCCCCCcccCcEEecCCCCcHHHHHHHHHHHh
Q 015613 298 IPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAK 332 (403)
Q Consensus 298 iP~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~a~~~~~ 332 (403)
+-+||.||.. |+|-.+|.+..++..+.++
T Consensus 51 ~FkCP~CgEE------FyG~~Lp~~EaeKVFELLN 79 (95)
T 2k5c_A 51 VFKCPVCGEE------FYGKTLPRREAEKVFELLN 79 (95)
T ss_dssp EEECTTTCCE------EETTSSCTTTHHHHHHHHH
T ss_pred hhcCCCccHH------HhcccCChHHHHHHHHHHH
Confidence 5689999975 7899999876666666655
No 35
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=73.83 E-value=5.7 Score=42.71 Aligned_cols=56 Identities=11% Similarity=0.152 Sum_probs=43.3
Q ss_pred HhhCCeEEEEccCcch-h--hHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHH
Q 015613 331 AKECDAFLVLGSSLMT-M--SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLG 386 (403)
Q Consensus 331 ~~~aDllLVVGTSL~V-~--p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~ 386 (403)
++.+|++|++|+.... . .....+..++++|+++|.|++..+.....+|..|.-+-+
T Consensus 197 ~~~ad~il~~G~n~~~~~p~~~~~~~~~a~~~G~klividPr~t~ta~~Ad~~l~irPG 255 (765)
T 2vpz_A 197 WENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPRFSTAAAKAHRWLPIKPG 255 (765)
T ss_dssp GGGCSEEEEESCCBTTBCCHHHHHHHHHHHHTTCEEEEECSBCCTTGGGCSEEECCCTT
T ss_pred cccCCEEEEEeCChhhcCChHHHHHHHHHHHCCCEEEEECCCCCcchhhCCeEeCCCCC
Confidence 5789999999986544 3 345566677889999999999999888888887654433
No 36
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=69.48 E-value=2.7 Score=34.83 Aligned_cols=20 Identities=25% Similarity=0.561 Sum_probs=14.6
Q ss_pred eeeccceeeEEcCCCCcccc
Q 015613 223 LELHGTVYTVVCLDCGFSFC 242 (403)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~ 242 (403)
+++.---...+|.+|++.+.
T Consensus 65 L~i~~~p~~~~C~~CG~~~e 84 (119)
T 2kdx_A 65 LDIVDEKVELECKDCSHVFK 84 (119)
T ss_dssp EEEEEECCEEECSSSSCEEC
T ss_pred EEEEeccceEEcCCCCCEEe
Confidence 55555555789999998864
No 37
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=68.72 E-value=7.2 Score=37.69 Aligned_cols=59 Identities=12% Similarity=0.141 Sum_probs=44.7
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCC-CCCCcccEEEECcHHHHHHHHHHhC
Q 015613 333 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 333 ~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t-~~d~~~~l~I~~~~~evL~~L~~~~ 396 (403)
..+|.|-+|.|-.+.=..-+ +.-..+|-||.++. ++-+.+|+-|-+|+-+++|+|.+.+
T Consensus 248 ~P~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~v~P~L~~~l 307 (307)
T 1efp_A 248 APELYVAVGISGAIQHLAGM-----KDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGKL 307 (307)
T ss_dssp CCSEEEEESCCCCHHHHTTT-----TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHTC
T ss_pred CCceEEEEeccCcHHHHhhh-----ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHhhC
Confidence 56799999999877522222 12234778999874 5667999999999999999998763
No 38
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=68.49 E-value=7.1 Score=37.87 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=45.2
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCC-CCCCcccEEEECcHHHHHHHHHHhC
Q 015613 333 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 333 ~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t-~~d~~~~l~I~~~~~evL~~L~~~~ 396 (403)
..+|.|-+|.|-.+.=..-+ +.-..+|-||.++. ++-+.+|+-|-+|+-+++|+|.+.+
T Consensus 253 ~P~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIf~~ADygiVgDl~~v~P~L~~~l 312 (315)
T 1efv_A 253 APELYIAVGISGAIQHLAGM-----KDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEIL 312 (315)
T ss_dssp CCSEEEEESCCCCHHHHTTT-----TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHHT
T ss_pred CcceEEEecccCcHHHHhhc-----ccCCEEEEEeCCCCCCcchhcCeEEeeeHHHHHHHHHHHH
Confidence 45799999999877522222 12234778999874 5667999999999999999999876
No 39
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=67.98 E-value=1.6 Score=37.55 Aligned_cols=22 Identities=14% Similarity=0.419 Sum_probs=16.7
Q ss_pred eeeccceeeEEcCCCCcccchh
Q 015613 223 LELHGTVYTVVCLDCGFSFCRD 244 (403)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~~~ 244 (403)
+++.---..++|.+||+.+...
T Consensus 62 L~i~~~p~~~~C~~CG~~~~~~ 83 (139)
T 3a43_A 62 IEFVEEEAVFKCRNCNYEWKLK 83 (139)
T ss_dssp EEEEEECCEEEETTTCCEEEGG
T ss_pred EEEEecCCcEECCCCCCEEecc
Confidence 5666666688999999988643
No 40
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=67.63 E-value=2.4 Score=43.94 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=44.3
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~ 396 (403)
+.+.++++|+||++|+.+.-.....+... ..+.++|.|+.++...+. ......++.++|..|.+.+
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l 335 (568)
T 2wvg_A 270 VEKTMKEADAVIALAPVFNDYSTTGWTDI--PDPKKLVLAEPRSVVVNG--IRFPSVHLKDYLTRLAQKV 335 (568)
T ss_dssp HHHHHHHCSEEEEESCCCBTTTTTTTTCC--CCTTTEEEECSSEEEETT--EEEESCCHHHHHHHHHHHC
T ss_pred HHHHHHhCCEEEEECCCcccccccccccC--CCCCcEEEEeCChhhcCC--eecCCCCHHHHHHHHHHhc
Confidence 34567889999999998754432222111 135679999998876653 3445556889999888754
No 41
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=67.08 E-value=2.6 Score=43.70 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=44.8
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~ 396 (403)
+.+.++++|+||++|+.+.-.....+... ..+.++|.|+.++...+. .....-.+.++|..|.+.+
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l 335 (566)
T 2vbi_A 270 VQELVETSDALLCIAPVFNDYSTVGWSAW--PKGPNVILAEPDRVTVDG--RAYDGFTLRAFLQALAEKA 335 (566)
T ss_dssp HHHHHHTCSEEEEESCCCBTTTTTTTTSC--CCSTTEEEECSSEEEETT--EEEESSCHHHHHHHHHHHC
T ss_pred HHHHHHhCCEEEEECCCcccccccccccc--CCCCcEEEEeCChheeCC--cccCCccHHHHHHHHHHhc
Confidence 44567899999999998755443222111 136789999998876654 2445556888999888754
No 42
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=66.51 E-value=2.9 Score=38.09 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=11.5
Q ss_pred eeeEEcCCCCcccc
Q 015613 229 VYTVVCLDCGFSFC 242 (403)
Q Consensus 229 ~~~~~C~~C~~~~~ 242 (403)
...++|..||+.|.
T Consensus 169 ~~~~~C~~CG~i~~ 182 (202)
T 1yuz_A 169 DKFHLCPICGYIHK 182 (202)
T ss_dssp CCEEECSSSCCEEE
T ss_pred CcEEEECCCCCEEc
Confidence 45789999998874
No 43
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=65.93 E-value=2.6 Score=43.63 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=43.0
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHH
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLD 394 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~ 394 (403)
.+.+.++++|+||++|+.+.-.....+... ..+.++|.|+.++...+.. ....-++.++|..|++
T Consensus 271 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~--~~~~~~~~~~l~~L~~ 335 (563)
T 2vk8_A 271 EVKEAVESADLILSVGALLSDFNTGSFSYS--YKTKNIVEFHSDHMKIRNA--TFPGVQMKFVLQKLLT 335 (563)
T ss_dssp HHHHHHHTCSEEEEESCCCCTTTTTTTCCC--CCCSCEEEECSSEEEETTE--EEETCCHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCCccccccccccC--CCCCeEEEEeCCceEECCc--ccCCcCHHHHHHHHHH
Confidence 345677899999999998854433222111 1257899999988766553 3344557888888865
No 44
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=65.35 E-value=9.3 Score=42.49 Aligned_cols=57 Identities=26% Similarity=0.367 Sum_probs=42.4
Q ss_pred HHhhCCeEEEEccCcch-hh-HHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHH
Q 015613 330 AAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLG 386 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V-~p-~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~ 386 (403)
.++.+|++|++|+.... .| ....+..++++|+++|.|++..|.....+|+.|.=+-+
T Consensus 181 D~~~ad~il~~G~N~~~~~p~~~~~~~~a~~~G~klivIDPr~t~ta~~AD~~l~irPG 239 (977)
T 1h0h_A 181 DLKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPRYTRTSTKCDLYAPLRSG 239 (977)
T ss_dssp GGGGCSEEEEESCCHHHHSTTHHHHHHHHHHTTCEEEEECSSCCTTGGGCSEEECCCTT
T ss_pred HHhhCCEEEEECCChHHhCcHHHHHHHHHHHCCCeEEEECCCCCchhHHhCeeeccCCC
Confidence 46789999999986543 33 34445567788999999999998888888877554433
No 45
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=64.04 E-value=3.4 Score=36.60 Aligned_cols=13 Identities=23% Similarity=0.710 Sum_probs=10.4
Q ss_pred eeEEcCCCCcccc
Q 015613 230 YTVVCLDCGFSFC 242 (403)
Q Consensus 230 ~~~~C~~C~~~~~ 242 (403)
..++|..||+.|.
T Consensus 137 ~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 137 KVYICPICGYTAV 149 (170)
T ss_dssp CEEECTTTCCEEE
T ss_pred CeeEeCCCCCeeC
Confidence 3578999998874
No 46
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=63.83 E-value=5 Score=42.84 Aligned_cols=52 Identities=13% Similarity=0.342 Sum_probs=40.1
Q ss_pred HhhCCeEEEEccCcch-hh--HHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEE
Q 015613 331 AKECDAFLVLGSSLMT-MS--AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 382 (403)
Q Consensus 331 ~~~aDllLVVGTSL~V-~p--~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~ 382 (403)
++.+|++|++|+.... .| ....+..++++|+++|.|++..+.....+|..|.
T Consensus 158 ~~~ad~il~~G~n~~~~~p~~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l~ 212 (727)
T 2e7z_A 158 FADSNCLLFIGKNLSNHNWVSQFNDLKAALKRGCKLIVLDPRRTKVAEMADIWLP 212 (727)
T ss_dssp TTTCSEEEEESCCCBTTBSHHHHHHHHHHHHHTCEEEEECSSCCHHHHHCSEEEC
T ss_pred cccCCEEEEECCChhhcCCHHHHHHHHHHHHCCCeEEEECCCCCcchhhcceeec
Confidence 5799999999986544 33 4555666777899999999988877667777764
No 47
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=63.61 E-value=5.2 Score=42.62 Aligned_cols=55 Identities=15% Similarity=0.249 Sum_probs=40.1
Q ss_pred HHhhCCeEEEEccCcch-hh-HHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECc
Q 015613 330 AAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISAR 384 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V-~p-~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~ 384 (403)
.++.+|++|++|+.... .| ....+..++++|+++|.|++..+.....+|+.|.=+
T Consensus 163 di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l~ir 219 (715)
T 2iv2_X 163 EIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARIADMHIALK 219 (715)
T ss_dssp GGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCHHHHTCSEEECCC
T ss_pred HHhcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCCCCchhHhhCEEeccC
Confidence 35789999999986544 22 334445677889999999998887766677765543
No 48
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=63.04 E-value=8.4 Score=42.80 Aligned_cols=57 Identities=14% Similarity=0.268 Sum_probs=43.2
Q ss_pred HHhhCCeEEEEccCcch--hhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHH
Q 015613 330 AAKECDAFLVLGSSLMT--MSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLG 386 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V--~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~ 386 (403)
.+..+|++|++|+.... .+..+.+..++++|+++|.|++..+.....+|+.|.=+-+
T Consensus 243 D~~nad~Il~~G~N~~~~~p~~~~~~~~ar~~GakvivVDPr~t~ta~~AD~wl~irPG 301 (976)
T 2ivf_A 243 NLLDAELIFMTCSNWSYTYPSSYHFLSEARYKGAEVVVIAPDFNPTTPAADLHVPVRVG 301 (976)
T ss_dssp GGGGCSEEEEESCCHHHHCTTTHHHHHHHHHHTCEEEEECSSCCTTGGGCSEEECCCTT
T ss_pred hHhhCcEEEEeCCChhHcccHHHHHHHHHHHcCCEEEEECCCCCcchhhcCeEeccCCC
Confidence 36789999999986543 3445666677788999999999998887788877644333
No 49
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=63.04 E-value=8.4 Score=30.16 Aligned_cols=15 Identities=27% Similarity=0.809 Sum_probs=12.7
Q ss_pred eeeEEcCCCCcccch
Q 015613 229 VYTVVCLDCGFSFCR 243 (403)
Q Consensus 229 ~~~~~C~~C~~~~~~ 243 (403)
....+|..|++.|+.
T Consensus 25 m~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDE 39 (81)
T ss_dssp CCEEEETTTCCEEET
T ss_pred cceEEeCCCCEEEcC
Confidence 567899999999874
No 50
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=62.96 E-value=9.9 Score=27.13 Aligned_cols=14 Identities=29% Similarity=0.728 Sum_probs=11.3
Q ss_pred eeEEcCCCCcccch
Q 015613 230 YTVVCLDCGFSFCR 243 (403)
Q Consensus 230 ~~~~C~~C~~~~~~ 243 (403)
...+|..|++.|+.
T Consensus 2 ~~y~C~~CGyvYd~ 15 (52)
T 1e8j_A 2 DIYVCTVCGYEYDP 15 (52)
T ss_dssp CCEECSSSCCCCCT
T ss_pred CcEEeCCCCeEEcC
Confidence 45799999999863
No 51
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=62.12 E-value=5.5 Score=27.83 Aligned_cols=14 Identities=29% Similarity=0.731 Sum_probs=11.4
Q ss_pred eeEEcCCCCcccch
Q 015613 230 YTVVCLDCGFSFCR 243 (403)
Q Consensus 230 ~~~~C~~C~~~~~~ 243 (403)
...+|..||+.|+.
T Consensus 3 ~~y~C~vCGyvyd~ 16 (46)
T 6rxn_A 3 QKYVCNVCGYEYDP 16 (46)
T ss_dssp CCEEETTTCCEECG
T ss_pred CEEECCCCCeEEeC
Confidence 45799999999863
No 52
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=61.84 E-value=2 Score=44.52 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=43.7
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~ 396 (403)
.+.+.++++|+||++|+.+.-.....+... ..+.++|.|+.++...+.. .....++.++|..|.+.+
T Consensus 288 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~--~~~~~~~~~~l~~L~~~l 354 (570)
T 2vbf_A 288 SLKNFVESADFILMLGVKLTDSSTGAFTHH--LDENKMISLNIDEGIIFNK--VVEDFDFRAVVSSLSELK 354 (570)
T ss_dssp HHHHHHHHCSEEEEESCCCCGGGTTTTCCC--CCGGGEEEECSSCEEETTE--EECSSCHHHHHHTGGGCC
T ss_pred HHHHHHHhCCEEEEECCCcccccccccccC--CCCCeEEEEeCCHHHhCCe--eecCCCHHHHHHHHHHhc
Confidence 345677899999999998754433222111 1246789999987765542 334556888888887644
No 53
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=61.74 E-value=3.3 Score=42.59 Aligned_cols=65 Identities=12% Similarity=0.180 Sum_probs=42.4
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHH
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLD 394 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~ 394 (403)
.+.+.++++|+||++|+.+.......+... ..+.++|.|+.++...+.. ....-++.++|..|++
T Consensus 269 ~~~~~l~~aD~vl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~--~~~~~~~~~~l~~L~~ 333 (552)
T 1ovm_A 269 AVKEAIEGADTVLCVGTRFTDTLTAGFTHQ--LTPAQTIEVQPHAARVGDV--WFTGIPMNQAIETLVE 333 (552)
T ss_dssp HHHHHHHTSSEEEEESCCCCTTTTTTTCCC--CCTTTEEEECSSEEEETTE--EEESCCHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCCCcccccccccC--CCCCeEEEEeCChheeCCc--ccCCccHHHHHHHHHh
Confidence 355677899999999998865443222111 1256789999887765542 2334456888888765
No 54
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=60.92 E-value=13 Score=33.17 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=43.7
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcc---cEEEECcH
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLT---TLKISARL 385 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~---~l~I~~~~ 385 (403)
.+.+-|++|++-.|-.+.-....++.++++|+++|.| +...++....+ |+.|.-..
T Consensus 111 ~~~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~~~~ 170 (201)
T 3trj_A 111 LGNEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRVPS 170 (201)
T ss_dssp HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEEESC
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEEeCC
Confidence 4678999999999999988899999999999998777 45555665666 76654433
No 55
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=60.76 E-value=8.5 Score=40.96 Aligned_cols=57 Identities=16% Similarity=0.389 Sum_probs=40.8
Q ss_pred HHhhCCeEEEEccCcch-hh-HHHHHHHHHhC--CCeEEEEcCCCCCCCCcccEEEECcHH
Q 015613 330 AAKECDAFLVLGSSLMT-MS-AYRLVRAAHEA--GSTIAIVNVGETRADDLTTLKISARLG 386 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V-~p-~~~lv~~a~~~--g~~liiIN~~~t~~d~~~~l~I~~~~~ 386 (403)
.++.+|++|++|+.... .| ....+..++++ |+++|.|++..+.....+|+.|.=+-+
T Consensus 163 d~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~ta~~Ad~~l~irPG 223 (723)
T 2nap_A 163 DIDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAFRPG 223 (723)
T ss_dssp GGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGGGGGCSEEECCCTT
T ss_pred hHhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcCCchhhhhCeeeecCCC
Confidence 35799999999986544 22 23334455666 999999999998887788877654433
No 56
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=60.02 E-value=5.7 Score=30.22 Aligned_cols=11 Identities=18% Similarity=0.797 Sum_probs=8.6
Q ss_pred eEEcCCCCccc
Q 015613 231 TVVCLDCGFSF 241 (403)
Q Consensus 231 ~~~C~~C~~~~ 241 (403)
...|.+|+..+
T Consensus 28 ~Y~C~~CG~~~ 38 (70)
T 1twf_L 28 KYICAECSSKL 38 (70)
T ss_dssp CEECSSSCCEE
T ss_pred EEECCCCCCcc
Confidence 35899999765
No 57
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=60.00 E-value=12 Score=28.36 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=12.8
Q ss_pred ceeeEEcCCCCcccch
Q 015613 228 TVYTVVCLDCGFSFCR 243 (403)
Q Consensus 228 s~~~~~C~~C~~~~~~ 243 (403)
.....+|..|++.|+.
T Consensus 4 ~m~~y~C~vCGyiYd~ 19 (70)
T 1dx8_A 4 DEGKYECEACGYIYEP 19 (70)
T ss_dssp CSSCEEETTTCCEECT
T ss_pred CCceEEeCCCCEEEcC
Confidence 3557899999999863
No 58
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=59.28 E-value=9.5 Score=27.54 Aligned_cols=14 Identities=29% Similarity=0.719 Sum_probs=11.5
Q ss_pred eeEEcCCCCcccch
Q 015613 230 YTVVCLDCGFSFCR 243 (403)
Q Consensus 230 ~~~~C~~C~~~~~~ 243 (403)
...+|..|++.|+.
T Consensus 2 ~~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 2 RKWQCVVCGFIYDE 15 (55)
T ss_dssp CEEEETTTCCEEET
T ss_pred CcEEeCCCCeEECC
Confidence 46799999999864
No 59
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=58.43 E-value=2.9 Score=29.46 Aligned_cols=13 Identities=23% Similarity=0.421 Sum_probs=8.8
Q ss_pred eEEcCCCCcccch
Q 015613 231 TVVCLDCGFSFCR 243 (403)
Q Consensus 231 ~~~C~~C~~~~~~ 243 (403)
...|..|++++..
T Consensus 3 iY~C~rCg~~fs~ 15 (48)
T 4ayb_P 3 VYRCGKCWKTFTD 15 (48)
T ss_dssp --CCCCTTTTCCC
T ss_pred EEEeeccCCCccH
Confidence 3579999988753
No 60
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=57.54 E-value=10 Score=30.14 Aligned_cols=15 Identities=20% Similarity=0.718 Sum_probs=12.5
Q ss_pred eeeEEcCCCCcccch
Q 015613 229 VYTVVCLDCGFSFCR 243 (403)
Q Consensus 229 ~~~~~C~~C~~~~~~ 243 (403)
....+|..||+.|+.
T Consensus 33 m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 33 YLKWICITCGHIYDE 47 (87)
T ss_dssp CCEEEETTTTEEEET
T ss_pred CceEECCCCCeEecC
Confidence 557899999999864
No 61
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=56.90 E-value=6.9 Score=34.05 Aligned_cols=26 Identities=4% Similarity=0.065 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 109 IEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 109 ~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
..++++++++|++|++-||+.|.|+.
T Consensus 21 ~~~v~~aa~~L~~AkrPvil~G~g~~ 46 (170)
T 3cf4_G 21 AVSPEMAAKIISKAKRPLLMVGTLAL 46 (170)
T ss_dssp ECCHHHHHHHHHHCSSEEEEECSTTC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 34699999999999999999999864
No 62
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=55.31 E-value=19 Score=30.92 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=42.8
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEECc
Q 015613 329 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISAR 384 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~~ 384 (403)
..+.+-|++|++-.|-.+.-....++.++++|+++|.| |...++..+.+|+.|.-.
T Consensus 106 ~~~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~ 162 (188)
T 1tk9_A 106 ALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVP 162 (188)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEES
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeC
Confidence 44678899999999988888889999999999997766 444455556677665443
No 63
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=54.45 E-value=31 Score=30.51 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=44.2
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEECcH
Q 015613 329 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISARL 385 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~~~ 385 (403)
..+.+-|++|++-.|-.+.-..+.++.++++|+++|.| |....+..+.+|+.|.-..
T Consensus 127 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~~~ 184 (212)
T 2i2w_A 127 AVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPH 184 (212)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEECC
T ss_pred hcCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEcCC
Confidence 45678999999998888888888899999999987655 5555666677787765544
No 64
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=53.69 E-value=67 Score=27.83 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHHhhCCeEEEE-----ccCcchhhHHHHHHHHHhCCCeEEEEcCCCCC---------------------C
Q 015613 320 PKDRADKAMEAAKECDAFLVL-----GSSLMTMSAYRLVRAAHEAGSTIAIVNVGETR---------------------A 373 (403)
Q Consensus 320 p~~~~~~a~~~~~~aDllLVV-----GTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~---------------------~ 373 (403)
+...++.-.+++++||++|.+ |.....--++++= +|...|.|++.+..+... .
T Consensus 54 ~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiG-yA~AlgKPVi~l~~d~r~~~~~~~~~~d~~g~~vedf~~~ 132 (161)
T 2f62_A 54 ALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVG-CAAALNKMVLTFTSDRRNMREKYGSGVDKDNLRVEGFGLP 132 (161)
T ss_dssp HHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHH-HHHHTTCEEEEECSCCSCHHHHHTSSBCTTSCBCCCSSCS
T ss_pred HHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHH-HHHHCCCEEEEEEcCchhhhhhcccccccccccccccCCc
Confidence 455677778999999999999 5455444445553 455679999998754210 0
Q ss_pred CC---cccEEEECcHHHHHHHHHHhCC
Q 015613 374 DD---LTTLKISARLGEILPRVLDVGS 397 (403)
Q Consensus 374 d~---~~~l~I~~~~~evL~~L~~~~~ 397 (403)
.+ ...+.+..+.++.|..|.+.+.
T Consensus 133 ~NLMl~~~~~~~~~~~~~l~~l~~~~~ 159 (161)
T 2f62_A 133 FNLMLYDGVEVFDSFESAFKYFLANFP 159 (161)
T ss_dssp SCGGGCCSSCEESSHHHHHHHHHHHSC
T ss_pred chhhhhhhheeeCCHHHHHHHHHHhhc
Confidence 11 1123378899999999988754
No 65
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=53.65 E-value=16 Score=31.65 Aligned_cols=58 Identities=16% Similarity=0.099 Sum_probs=43.5
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEECcHH
Q 015613 329 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISARLG 386 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~~~~ 386 (403)
..+.+-|++|++-.|-.+.-....++.++++|+++|.| |....+....+|+.|.-..+
T Consensus 112 ~~~~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~~~ 170 (198)
T 2xbl_A 112 ALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSA 170 (198)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEECSCS
T ss_pred hhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEeCCC
Confidence 34678899999998888888888999999999987666 44445555667777655443
No 66
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=53.21 E-value=6.1 Score=36.95 Aligned_cols=20 Identities=10% Similarity=0.446 Sum_probs=14.1
Q ss_pred eeeccceeeEEcCCCCcccchhhH
Q 015613 223 LELHGTVYTVVCLDCGFSFCRDLF 246 (403)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~~~~~ 246 (403)
+.++|. .|..|+-..+.+.+
T Consensus 194 v~v~~~----~C~GC~~~lppq~~ 213 (256)
T 3na7_A 194 VTIKKQ----ACGGCFIRLNDKIY 213 (256)
T ss_dssp EECBTT----BCTTTCCBCCHHHH
T ss_pred EEeeCC----ccCCCCeeeCHHHH
Confidence 555654 89999987765544
No 67
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=53.20 E-value=16 Score=39.63 Aligned_cols=59 Identities=17% Similarity=0.113 Sum_probs=40.6
Q ss_pred HHHHhhCCeEEEEccCcch-hhH-HHHHHHHH-------------------------hCCCeEEEEcCCCCCCCCcccEE
Q 015613 328 MEAAKECDAFLVLGSSLMT-MSA-YRLVRAAH-------------------------EAGSTIAIVNVGETRADDLTTLK 380 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V-~p~-~~lv~~a~-------------------------~~g~~liiIN~~~t~~d~~~~l~ 380 (403)
...++++|++|++| .... .|. ...++.+. ++|+++|.|++..|.....++..
T Consensus 387 ~~di~~ad~Il~~G-Np~~~~P~~~~rlr~a~~~~~~~~~~~~g~~~~~~~v~~~~~~~g~klividPr~t~ta~~Ad~~ 465 (783)
T 3i9v_3 387 LEDLLQADFALVLG-DPTEEAPILHLRLSEFVRDLKPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMKWAAIH 465 (783)
T ss_dssp HHHHHHCSCEEEES-CHHHHSTHHHHHHHHHHTTCCCCCCBTTBSCSSCTTCCTTCCCCTTSEEEEESSCCGGGTTCSEE
T ss_pred HHHHhhCCEEEEeC-ChhHhCcHHHHHHHHHHHhcccchhhcccccchhhhhhhhhhcCCCEEEEEeCCcchhhHhhcce
Confidence 34567999999999 6543 342 22233332 56899999999999888888877
Q ss_pred EECcHHH
Q 015613 381 ISARLGE 387 (403)
Q Consensus 381 I~~~~~e 387 (403)
+.-..++
T Consensus 466 l~i~PGt 472 (783)
T 3i9v_3 466 EVHRPGE 472 (783)
T ss_dssp EECCSSC
T ss_pred EecCCCc
Confidence 6544443
No 68
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=52.59 E-value=9.1 Score=41.20 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=38.5
Q ss_pred HHhhCCeEEEEccCcch-hh---------HHHHHHHHHhCCCeEEEEcCCCCCCCCcc-cEEEE
Q 015613 330 AAKECDAFLVLGSSLMT-MS---------AYRLVRAAHEAGSTIAIVNVGETRADDLT-TLKIS 382 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V-~p---------~~~lv~~a~~~g~~liiIN~~~t~~d~~~-~l~I~ 382 (403)
.++.+|++|++|+.... .| ....+..++++|+++|.|++-.|.....+ |+.|.
T Consensus 174 d~~~ad~il~~G~N~~~~~~~~~~~~~~~~~~~l~~a~~~G~klivIDPr~t~ta~~aad~~l~ 237 (780)
T 1eu1_A 174 VVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVIAINPVRTETADYFGADVVS 237 (780)
T ss_dssp HHHHCSEEEEESCCHHHHTTCCSSBCCCHHHHHHHHHHHHTCEEEEESSBCCHHHHHHTCEEEC
T ss_pred HHhhCCEEEEECCCHHHhcCCCCcccccchHHHHHHHHHCCCeEEEECCCCCCcccccCCEEee
Confidence 46799999999986533 22 33455567778999999998888765554 66654
No 69
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=51.77 E-value=31 Score=33.71 Aligned_cols=73 Identities=18% Similarity=0.344 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCC----CCCCcccEEEECcH-------HHHHHH
Q 015613 323 RADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET----RADDLTTLKISARL-------GEILPR 391 (403)
Q Consensus 323 ~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t----~~d~~~~l~I~~~~-------~evL~~ 391 (403)
+.+.+.+..+++|++||||..-. ..-.+|.+-+.+.|.+.+.|....- -+.....+-|.+.+ .+|+..
T Consensus 215 RQ~av~~lA~~vD~miVVGg~nS-SNT~rL~eia~~~g~~ty~Ie~~~el~~~wl~g~~~VGITAGASTP~~lieeVi~~ 293 (328)
T 3szu_A 215 RQEAVRALAEQAEVVLVVGSKNS-SNSNRLAELAQRMGKRAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQNVVAR 293 (328)
T ss_dssp HHHHHHHHHHHCSEEEEECCTTC-HHHHHHHHHHHHTTCEEEEESSGGGCCHHHHTTCSEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEEeCCCCC-chHHHHHHHHHHhCCCEEEeCChHHCCHHHhCCCCEEEEeecCCCCHHHHHHHHHH
Confidence 45556677789999999997543 3446888888888988888874321 12333445566654 456666
Q ss_pred HHHhC
Q 015613 392 VLDVG 396 (403)
Q Consensus 392 L~~~~ 396 (403)
|.+.+
T Consensus 294 l~~~~ 298 (328)
T 3szu_A 294 LQQLG 298 (328)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 66544
No 70
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=50.50 E-value=8.9 Score=44.01 Aligned_cols=53 Identities=11% Similarity=0.114 Sum_probs=39.8
Q ss_pred HHhhCCeEEEEccCcch--hhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEE
Q 015613 330 AAKECDAFLVLGSSLMT--MSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 382 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V--~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~ 382 (403)
.+..+|+||++|+.... .+....+..++++|+++|.|++..+.....+|+.|.
T Consensus 243 D~~~ad~iv~wGsN~~~t~~~~~~~l~~ar~~G~KvVvIDPr~t~ta~~AD~wl~ 297 (1247)
T 1q16_A 243 DWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLA 297 (1247)
T ss_dssp GGGGCSEEEEESCCHHHHSGGGHHHHHHHGGGTCEEEEECSSCCHHHHHSSEEEC
T ss_pred HHhhCCEEEEECCCchhccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhCCeEEe
Confidence 45789999999987533 345566667788899999999988876666666643
No 71
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=49.52 E-value=9.7 Score=41.64 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=36.4
Q ss_pred HHhhCCeEEEEccCcchhhH-------HHHHHHHHhCCCeEEEEcCCCCCCCCc-ccEEE
Q 015613 330 AAKECDAFLVLGSSLMTMSA-------YRLVRAAHEAGSTIAIVNVGETRADDL-TTLKI 381 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~-------~~lv~~a~~~g~~liiIN~~~t~~d~~-~~l~I 381 (403)
.++.+|++|++|+.....|. ..+...++++|+++|.|++-.|..... +|+.|
T Consensus 205 ~~~~ad~il~~G~Np~~~p~~~~~~~~~~~~~~a~~~G~klivIDPr~t~ta~~~Ad~~l 264 (875)
T 1ti6_A 205 GLKHAEMIVFWSSDPETNSGIYAGFESNIRRQWLKDLGVDFVFIDPHMNHTARLVADKWF 264 (875)
T ss_dssp HHHHCSEEEEESCCHHHHCSSSCTTTTHHHHHHHHHTTCEEEEECSBCCHHHHHHCSEEE
T ss_pred HHhcCCEEEEECCChhhCCccCCCccchHHHHHHHHcCCeEEEECCCCCCcccccCCEEe
Confidence 46899999999997733443 233333677899999999888765444 46553
No 72
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=49.29 E-value=12 Score=41.83 Aligned_cols=54 Identities=17% Similarity=0.305 Sum_probs=39.2
Q ss_pred HHhhCCeEEEEccCcch-hh-HHHHHHHHH-hCCCeEEEEcCCCCCCCCcccEEEEC
Q 015613 330 AAKECDAFLVLGSSLMT-MS-AYRLVRAAH-EAGSTIAIVNVGETRADDLTTLKISA 383 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V-~p-~~~lv~~a~-~~g~~liiIN~~~t~~d~~~~l~I~~ 383 (403)
.++.+|++|++|+.... .| ....+..++ ++|+++|.|++..|.....+|+.|.=
T Consensus 219 D~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivIDPr~t~ta~~AD~~l~i 275 (1015)
T 1kqf_A 219 DIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAPI 275 (1015)
T ss_dssp GGGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSSCCHHHHTCSEEECC
T ss_pred HHhhCCEEEEECCChhhhCchHHHHHHHHHHHCCCeEEEEeCCCCchhHhhCeeecc
Confidence 46789999999986543 22 234445566 78999999999888766677766543
No 73
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=48.11 E-value=29 Score=33.40 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=48.4
Q ss_pred CcEEecCCCCc--HHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCC----CCCCCcccEEEEC
Q 015613 310 PDVVFFGDNVP--KDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGE----TRADDLTTLKISA 383 (403)
Q Consensus 310 P~Vv~FgE~~p--~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~----t~~d~~~~l~I~~ 383 (403)
|++..|++-=. ..+.+.+.+...++|++||||..-. ..-.+|.+-+.+.|.+.+.|.... .-+.....+-|.+
T Consensus 184 p~~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nS-SNT~rL~eia~~~~~~ty~Ie~~~el~~~wl~~~~~VGITA 262 (297)
T 3dnf_A 184 KEVKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNS-GNTRRLYYISKELNPNTYHIETAEELQPEWFRGVKRVGISA 262 (297)
T ss_dssp SEEEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTC-HHHHHHHHHHHHHCSSEEEESSGGGCCGGGGTTCSEEEEEE
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCC-chhHHHHHHHHhcCCCEEEeCChHHCCHHHhCCCCEEEEee
Confidence 35555655422 2345566777889999999997543 334688887877788888887432 2233444566776
Q ss_pred cHH
Q 015613 384 RLG 386 (403)
Q Consensus 384 ~~~ 386 (403)
.++
T Consensus 263 GAS 265 (297)
T 3dnf_A 263 GAS 265 (297)
T ss_dssp CTT
T ss_pred cCC
Confidence 643
No 74
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=47.70 E-value=13 Score=32.24 Aligned_cols=61 Identities=7% Similarity=0.102 Sum_probs=33.3
Q ss_pred HHHhhCCeEEEEccCc--chhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEE-CcHHHHHHHHHHh
Q 015613 329 EAAKECDAFLVLGSSL--MTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS-ARLGEILPRVLDV 395 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL--~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~-~~~~evL~~L~~~ 395 (403)
+.+++||++|++|+.+ .-.....+-.. . . .++|.|+..... . ....+. =...++|+.|.+.
T Consensus 103 ~~~~~aDlvl~iG~~~~~~~~~t~~~~~~-~-~-~~iI~i~~~~~~--~-~~~~~~~l~~~~~l~~L~~~ 166 (170)
T 3cf4_G 103 DGNGNYDMIITIGFKKFYINQVLSAAKNF-S-N-LKTIAIERGYIQ--N-ATMSFGNLSKADHYAALDEL 166 (170)
T ss_dssp SSSCCCSEEEEESCCHHHHHHHHHHHHHH-C-C-CCEEECSSSCCT--T-SSEECCCCCHHHHHHHHHHH
T ss_pred HHhhcCCEEEEECCccCcccccccccccc-C-C-CeEEEECCCccc--c-hhhhhccCCHHHHHHHHHHH
Confidence 4467899999999988 44332222211 1 2 567766554322 1 111111 1367788877664
No 75
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=46.09 E-value=25 Score=38.13 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=38.6
Q ss_pred HHhhCCeEEEEccCcch-hhH-HHHHHHHH--hCCCeEEEEcCCCCCCCCcccEEEECc
Q 015613 330 AAKECDAFLVLGSSLMT-MSA-YRLVRAAH--EAGSTIAIVNVGETRADDLTTLKISAR 384 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V-~p~-~~lv~~a~--~~g~~liiIN~~~t~~d~~~~l~I~~~ 384 (403)
.++.+|++|++|+.... .|. ...+..++ ++|+++|.|++-.|.....+|+.|.=+
T Consensus 175 d~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~~G~klivIDPr~t~ta~~AD~~l~ir 233 (802)
T 3ml1_A 175 DFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKTRVVVLSTFTHRCFDLADIGIIFK 233 (802)
T ss_dssp GGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHSTTCEEEEEESSBCGGGGTCSEEEECC
T ss_pred HHhhCCEEEEECCChHHhChHHHHHHHHHHHhcCCCEEEEEeCCCCchhHHhccEeccC
Confidence 46889999999986544 442 22233333 379999999999988877777765433
No 76
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=46.04 E-value=48 Score=28.50 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=42.8
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCc---ccEEEECcH
Q 015613 329 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDL---TTLKISARL 385 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~---~~l~I~~~~ 385 (403)
..+.+-|++|++-.|-.+.-....++.++++|+++|.| |...++.... +|+.|.-..
T Consensus 105 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~~ 165 (196)
T 2yva_A 105 ALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPS 165 (196)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECSC
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeCC
Confidence 55778999999999999988899999999999998766 4333433344 677665443
No 77
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=45.54 E-value=21 Score=25.73 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=11.3
Q ss_pred eeEEcCCCCcccch
Q 015613 230 YTVVCLDCGFSFCR 243 (403)
Q Consensus 230 ~~~~C~~C~~~~~~ 243 (403)
...+|..|++.|+.
T Consensus 2 ~~y~C~vCGyvYd~ 15 (54)
T 4rxn_A 2 KKYTCTVCGYIYDP 15 (54)
T ss_dssp CCEEETTTCCEECT
T ss_pred CceECCCCCeEECC
Confidence 35799999999863
No 78
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=45.12 E-value=14 Score=26.28 Aligned_cols=13 Identities=23% Similarity=0.774 Sum_probs=10.9
Q ss_pred eEEcCCCCcccch
Q 015613 231 TVVCLDCGFSFCR 243 (403)
Q Consensus 231 ~~~C~~C~~~~~~ 243 (403)
..+|..|++.|+.
T Consensus 2 ~~~C~~CGyvYd~ 14 (52)
T 1yk4_A 2 KLSCKICGYIYDE 14 (52)
T ss_dssp EEEESSSSCEEET
T ss_pred cEEeCCCCeEECC
Confidence 5799999999864
No 79
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=44.45 E-value=11 Score=30.84 Aligned_cols=12 Identities=42% Similarity=1.041 Sum_probs=9.7
Q ss_pred eeEEcCCCCccc
Q 015613 230 YTVVCLDCGFSF 241 (403)
Q Consensus 230 ~~~~C~~C~~~~ 241 (403)
....|.+||+++
T Consensus 66 ~p~~C~~CG~~F 77 (105)
T 2gmg_A 66 KPAQCRKCGFVF 77 (105)
T ss_dssp CCCBBTTTCCBC
T ss_pred ECcChhhCcCee
Confidence 356899999886
No 80
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=43.29 E-value=40 Score=28.77 Aligned_cols=57 Identities=9% Similarity=0.081 Sum_probs=41.6
Q ss_pred HHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEECc
Q 015613 328 MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISAR 384 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~~ 384 (403)
...+.+-|++|++-.|-.+.-....++.++++|+++|.| +...++....+|+.|.-.
T Consensus 82 ~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~ 139 (187)
T 3sho_A 82 LANLRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAA 139 (187)
T ss_dssp HHTCCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECC
T ss_pred HhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEec
Confidence 345668899999988888888888899999999997776 334444445566655443
No 81
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=42.69 E-value=13 Score=32.81 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=39.3
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEECc
Q 015613 331 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISAR 384 (403)
Q Consensus 331 ~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~~ 384 (403)
+.+-|++|++-.|-.+.-...+++.++++|+++|.| +...++....+|+.|.-.
T Consensus 87 ~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~ad~~l~~~ 141 (200)
T 1vim_A 87 ITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVK 141 (200)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECC
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChHHHhCCEEEEEC
Confidence 467899999988888888888888888889997766 333344445566665443
No 82
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=41.28 E-value=40 Score=29.17 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=43.9
Q ss_pred HHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCc---ccEEEECcHH
Q 015613 329 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDL---TTLKISARLG 386 (403)
Q Consensus 329 ~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~---~~l~I~~~~~ 386 (403)
..+.+-|++|++-.|-.+.-..+.++.++++|+++|.| +...++..+. +|+.|.-..+
T Consensus 109 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~~ 170 (199)
T 1x92_A 109 ALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSK 170 (199)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSCS
T ss_pred hCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCCC
Confidence 45678999999999998888889999999999998776 4334444456 7777655443
No 83
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=41.14 E-value=18 Score=39.14 Aligned_cols=52 Identities=8% Similarity=0.201 Sum_probs=38.2
Q ss_pred HhhCCeEEEEccCcch-h---------hHHHHHHHHHh---CCC-eEEEEcCCCCCCCCcc-cEEEE
Q 015613 331 AKECDAFLVLGSSLMT-M---------SAYRLVRAAHE---AGS-TIAIVNVGETRADDLT-TLKIS 382 (403)
Q Consensus 331 ~~~aDllLVVGTSL~V-~---------p~~~lv~~a~~---~g~-~liiIN~~~t~~d~~~-~l~I~ 382 (403)
++.+|++|++|+.... . +....+..+++ +|+ ++|.|++-.|.....+ |+.|.
T Consensus 208 ~~~ad~il~~G~Np~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~klivIDPr~t~ta~~a~d~~l~ 274 (829)
T 1tmo_A 208 LEHSDTIVLWSNDPYKNLQVGWNAETHESFAYLAQLKEKVKQGKIRVISIDPVVTKTQAYLGCEQLY 274 (829)
T ss_dssp HHHCSEEEEESCCHHHHTSCCSSBCCCTHHHHHHHHHHHHHHTSSEEEEECSSCCHHHHHHTCEEEC
T ss_pred HhhCCEEEEECCChhhccccccccccchHHHHHHHHHHHhhCCCceEEEECCCCCCcchhhcCEEec
Confidence 6899999999986643 2 24455556666 799 9999999888776666 66653
No 84
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=40.06 E-value=11 Score=39.01 Aligned_cols=66 Identities=12% Similarity=0.015 Sum_probs=39.6
Q ss_pred HHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHhC
Q 015613 327 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 396 (403)
Q Consensus 327 a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~l~I~~~~~evL~~L~~~~ 396 (403)
+.+.++++|+||++|+.+.......+.... ...++|.|+.++...... ....-.+.++|..|.+.+
T Consensus 283 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~--~~~~~i~i~~d~~~~~~~--~~~~~~~~~~l~~L~~~l 348 (565)
T 2nxw_A 283 ITRLVEESDGLFLLGAILSDTNFAVSQRKI--DLRKTIHAFDRAVTLGYH--TYADIPLAGLVDALLERL 348 (565)
T ss_dssp HHHHHHTCSEEEEESCCBCSSTTSBCTTTS--CGGGEEEEETTEEEETTE--EEESCCHHHHHHHHHHTS
T ss_pred HHHHHHhCCEEEEECCCccccccccccccC--CCCcEEEEeCCceeeCCc--ccCCccHHHHHHHHHHhc
Confidence 456678999999999977544332221111 124688888766544332 333445677888887643
No 85
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=36.73 E-value=31 Score=29.22 Aligned_cols=52 Identities=21% Similarity=0.255 Sum_probs=34.6
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCCceee--ccceeeEEcCCCCcccch
Q 015613 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLEL--HGTVYTVVCLDCGFSFCR 243 (403)
Q Consensus 184 ~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~iel--HGs~~~~~C~~C~~~~~~ 243 (403)
...+...|+.|..|++.|.+..+-..|- ...+++ +..-+..+|.+||+..+.
T Consensus 58 ~is~aTVYR~L~~L~e~Glv~~~~~~~~--------~~~Y~~~~~~~H~HliC~~Cg~v~~~ 111 (150)
T 2xig_A 58 NTSISSVYRILNFLEKENFISVLETSKS--------GRRYEIAAKEHHDHIICLHCGKIIEF 111 (150)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTT--------EEEEEESCSCCCEEEEETTTCCEEEE
T ss_pred CCCHhhHHHHHHHHHHCCcEEEEEeCCC--------ceEEEecCCCCceEEEECCCCCEEEe
Confidence 3455678999999999998866544331 111333 123367899999997654
No 86
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=36.15 E-value=32 Score=32.58 Aligned_cols=69 Identities=17% Similarity=0.149 Sum_probs=49.7
Q ss_pred HHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCccc----EE---EECcHHHHHHHHHHhCC
Q 015613 328 MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTT----LK---ISARLGEILPRVLDVGS 397 (403)
Q Consensus 328 ~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~----l~---I~~~~~evL~~L~~~~~ 397 (403)
...+..||++++-||++..-...+++..++ ++..+|++-+..+-.+...+ .. +--|.+.++..+...++
T Consensus 181 e~ll~~aD~viiTGsTlvN~Ti~~lL~~~~-~a~~vvl~GPS~p~~P~lf~~Gv~~l~G~~V~D~~~~~~~i~~Ggg 256 (270)
T 2h1q_A 181 EFILPECDYVYITCASVVDKTLPRLLELSR-NARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVAGAEK 256 (270)
T ss_dssp HHHGGGCSEEEEETHHHHHTCHHHHHHHTT-TSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHTTSSC
T ss_pred HHHhhcCCEEEEEeeeeecCCHHHHHHhCc-cCCeEEEEecChhhhHHHHhcCcCEEEEeEecCHHHHHHHHHcCCC
Confidence 346789999999999999999999998875 44588888888655544322 11 34567778776665554
No 87
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=35.71 E-value=40 Score=31.96 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=49.8
Q ss_pred HHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCCCCCCccc----EE---EECcHHHHHHHHHHhCC
Q 015613 326 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTT----LK---ISARLGEILPRVLDVGS 397 (403)
Q Consensus 326 ~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t~~d~~~~----l~---I~~~~~evL~~L~~~~~ 397 (403)
.+...+.+||++++-||+|..-...+++..++ +...++++-+..+-.+..++ .. +--|.+.++..+....+
T Consensus 179 ~~~~~lp~~D~viiTgstlvN~Tl~~lL~~~~-~a~~vvl~GPStp~~P~lf~~Gv~~laG~~V~d~~~~~~~i~~Gg~ 256 (270)
T 3l5o_A 179 ASEFILPECDYVYITCASVVDKTLPRLLELSR-NARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVAGAEK 256 (270)
T ss_dssp GHHHHGGGCSEEEEETHHHHHTCHHHHHHHTT-TSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHTTSSC
T ss_pred HHHHhhccCCEEEEEeehhhcCCHHHHHhhCC-CCCEEEEECCCchhhHHHHhcCcCEEEEEEEcCHHHHHHHHhcCCC
Confidence 34567889999999999999999999998875 34567888887665544322 11 33457777766655443
No 88
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=35.27 E-value=15 Score=31.50 Aligned_cols=16 Identities=25% Similarity=0.632 Sum_probs=12.1
Q ss_pred ccceeeEEcCCCCccc
Q 015613 226 HGTVYTVVCLDCGFSF 241 (403)
Q Consensus 226 HGs~~~~~C~~C~~~~ 241 (403)
.|.+.-.+|.+|++.+
T Consensus 42 ~g~L~~~rC~~CG~~~ 57 (145)
T 2gnr_A 42 QNKIIGSKCSKCGRIF 57 (145)
T ss_dssp TTCCEEEECTTTCCEE
T ss_pred CCEEEEEEECCCCcEE
Confidence 4556677999999764
No 89
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=34.89 E-value=42 Score=28.67 Aligned_cols=51 Identities=20% Similarity=0.077 Sum_probs=35.3
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEE
Q 015613 331 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKI 381 (403)
Q Consensus 331 ~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I 381 (403)
+.+-|++|++-.|-.+.-....++.++++|+++|.| +...++....+|+.|
T Consensus 77 ~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l 128 (186)
T 1m3s_A 77 LAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLII 128 (186)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEE
T ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEE
Confidence 456789999988888877788888888889987766 333333333444443
No 90
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=34.44 E-value=23 Score=26.37 Aligned_cols=10 Identities=20% Similarity=0.767 Sum_probs=7.9
Q ss_pred CCCCCCCCCc
Q 015613 298 IPTCQKCNGV 307 (403)
Q Consensus 298 iP~Cp~Cgg~ 307 (403)
.-+|+.||..
T Consensus 38 ~iRC~~CG~R 47 (63)
T 3h0g_L 38 VIRCRECGHR 47 (63)
T ss_dssp CCCCSSSCCC
T ss_pred ceECCCCCcE
Confidence 4679999973
No 91
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=34.27 E-value=1.6e+02 Score=25.16 Aligned_cols=50 Identities=12% Similarity=0.041 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCC
Q 015613 320 PKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGE 370 (403)
Q Consensus 320 p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~ 370 (403)
+...+++-.+++++||++|++.+....--++++- +|...|.|++.+..+.
T Consensus 64 ~~~i~~~d~~~i~~aD~vva~~~~~d~Gt~~EiG-yA~algKPVi~l~~~~ 113 (165)
T 2khz_A 64 DQFIHEQDLNWLQQADVVVAEVTQPSLGVGYELG-RAVALGKPILCLFRPQ 113 (165)
T ss_dssp HHHHHHHHHHHHHHCSEEEEECSSCCHHHHHHHH-HHHHTCSSEEEEECTT
T ss_pred HHHHHHHHHHHHHhCCEEEEECCCCCCCHHHHHH-HHHHCCCEEEEEEcCC
Confidence 3445667778999999999987744333334443 4566799999885544
No 92
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=33.14 E-value=41 Score=28.59 Aligned_cols=54 Identities=7% Similarity=0.083 Sum_probs=39.8
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEEC
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISA 383 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~ 383 (403)
.+.+-|++|++-.|-.+.-....++.++++|+++|.| +...++....+|+.|.-
T Consensus 93 ~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~ 147 (183)
T 2xhz_A 93 MVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCV 147 (183)
T ss_dssp TCCTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEEC
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEe
Confidence 3567899999988888888888899999999987766 43444444556665543
No 93
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=32.91 E-value=18 Score=31.00 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=9.1
Q ss_pred eeEEcCCCCccc
Q 015613 230 YTVVCLDCGFSF 241 (403)
Q Consensus 230 ~~~~C~~C~~~~ 241 (403)
.-.+|.+|++.+
T Consensus 46 ~~~rC~~CG~~~ 57 (145)
T 3irb_A 46 IGSKCSKCGRIF 57 (145)
T ss_dssp EEEECTTTCCEE
T ss_pred EEEEeCCCCcEE
Confidence 356899999764
No 94
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=32.81 E-value=35 Score=30.52 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=39.5
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHh--CCCeEEEE-cCCCCCCCCcccEEEEC
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHE--AGSTIAIV-NVGETRADDLTTLKISA 383 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~--~g~~liiI-N~~~t~~d~~~~l~I~~ 383 (403)
.+.+-|++|++-.|-.+.-....++.+++ +|+++|.| |...++....+|+.|.-
T Consensus 103 ~~~~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~ 159 (220)
T 3etn_A 103 ILQENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLST 159 (220)
T ss_dssp GCCTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEEC
T ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEc
Confidence 45678999999888888888888888998 99997766 44444444556665543
No 95
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=32.65 E-value=14 Score=29.87 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=11.9
Q ss_pred CcEEEEeCCCCCcc
Q 015613 123 AKLIVLTGAGISTE 136 (403)
Q Consensus 123 k~IVVlTGAGISts 136 (403)
++|++..|+|+||+
T Consensus 4 kkIll~Cg~G~sTS 17 (106)
T 1e2b_A 4 KHIYLFSSAGMSTS 17 (106)
T ss_dssp EEEEEECSSSTTTH
T ss_pred cEEEEECCCchhHH
Confidence 46999999999876
No 96
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=32.29 E-value=45 Score=27.57 Aligned_cols=52 Identities=23% Similarity=0.225 Sum_probs=33.1
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCCceee--ccceeeEEcCCCCcccch
Q 015613 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLEL--HGTVYTVVCLDCGFSFCR 243 (403)
Q Consensus 184 ~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~iel--HGs~~~~~C~~C~~~~~~ 243 (403)
...+...|+.|..|++.|.+..+-..| |...+++ +..-+..+|.+||+..+.
T Consensus 50 ~is~aTVYR~L~~L~e~Glv~~~~~~~--------~~~~Y~~~~~~~H~HliC~~Cg~v~~~ 103 (136)
T 1mzb_A 50 DVGLATVYRVLTQFEAAGLVVRHNFDG--------GHAVFELADSGHHDHMVCVDTGEVIEF 103 (136)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEECSSS--------SSCEEEESSSCCCEEEEETTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEEeCC--------CceEEEeCCCCcceEEEECCCCCEEEe
Confidence 344567899999999999875442211 1122443 122356899999987654
No 97
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=31.79 E-value=16 Score=28.64 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=7.7
Q ss_pred eEEcCCCCcccc
Q 015613 231 TVVCLDCGFSFC 242 (403)
Q Consensus 231 ~~~C~~C~~~~~ 242 (403)
..+|..|++.|.
T Consensus 18 ~~~C~~C~~~~~ 29 (81)
T 2jrp_A 18 TAHCETCAKDFS 29 (81)
T ss_dssp EEECTTTCCEEE
T ss_pred ceECccccccCC
Confidence 446777776654
No 98
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=30.14 E-value=47 Score=28.16 Aligned_cols=52 Identities=15% Similarity=0.180 Sum_probs=38.7
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEEC
Q 015613 331 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISA 383 (403)
Q Consensus 331 ~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~ 383 (403)
+.+-|++|++-.|-.+.-....++.++++|+++|.| +...+ ....+|+.|.-
T Consensus 80 ~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s-l~~~ad~~l~~ 132 (180)
T 1jeo_A 80 YEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCECGN-VVEFADLTIPL 132 (180)
T ss_dssp CCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSCCG-GGGGCSEEEEC
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCCCh-HHHhCCEEEEe
Confidence 457899999988888877888888899999987776 33334 65666666543
No 99
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=29.27 E-value=45 Score=30.05 Aligned_cols=52 Identities=6% Similarity=0.198 Sum_probs=39.8
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCC-----------CCCCcccEEEE
Q 015613 331 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGET-----------RADDLTTLKIS 382 (403)
Q Consensus 331 ~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t-----------~~d~~~~l~I~ 382 (403)
+.+-|++|++-.|-.+.-..++++.++++|+++|-| |...+ ++.+.+|+.|.
T Consensus 106 ~~~~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT~~~~s~~~~~~~~~g~~La~~aD~~l~ 169 (243)
T 3cvj_A 106 VTNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLYEYADVVLD 169 (243)
T ss_dssp CCTTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGGGGCSEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccccCCCcCcHHHhCCEEEE
Confidence 567899999999999888889999999999998777 32222 45556777664
No 100
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=29.21 E-value=39 Score=28.22 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=32.8
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCCceeeccceeeEEcCCCCcccch
Q 015613 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCR 243 (403)
Q Consensus 184 ~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~ielHGs~~~~~C~~C~~~~~~ 243 (403)
...+.-.|+.|..|++.|.+..+-..+--..++.... ++.-+..+|.+||+..+.
T Consensus 45 ~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~~~-----~~~H~HliC~~Cg~v~~~ 99 (139)
T 3mwm_A 45 AVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRCST-----GDHHHHLVCRACGKAVEV 99 (139)
T ss_dssp CCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEECCSC-----SSCCEEEEETTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEECCC-----CCCccEEEECCCCCEeec
Confidence 3445578999999999998865543221111111110 012345899999997654
No 101
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=29.04 E-value=28 Score=30.64 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=0.0
Q ss_pred hhCCeEEEEccCcc--hhhHHHHHHHHHhCCCeEEEEcC
Q 015613 332 KECDAFLVLGSSLM--TMSAYRLVRAAHEAGSTIAIVNV 368 (403)
Q Consensus 332 ~~aDllLVVGTSL~--V~p~~~lv~~a~~~g~~liiIN~ 368 (403)
++|||+|.||+.+. ......+-..+. ++++|-|+.
T Consensus 107 ~~aDLvI~iG~rf~~~~~~t~~~~~fap--~akii~Idk 143 (174)
T 1ytl_A 107 GNYDLVLMLGSIYYHGSQMLAAIKNFAP--HIRALAIDR 143 (174)
T ss_dssp CCCSEEEEESCCHHHHHHHHHHHHHHCT--TCEEEECSS
T ss_pred CCCCEEEEECCcCCccccccccccccCC--CCeEEEeCC
No 102
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=28.91 E-value=1.2e+02 Score=25.68 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=40.4
Q ss_pred CCcHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcC
Q 015613 318 NVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV 368 (403)
Q Consensus 318 ~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~ 368 (403)
.++.+.++++.+.+.+++-++++|.+..-..+..+.....+-|.+...++.
T Consensus 23 ~l~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~ 73 (187)
T 3sho_A 23 QTQPEAIEAAVEAICRADHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTE 73 (187)
T ss_dssp TCCHHHHHHHHHHHHHCSEEEEECCGGGHHHHHHHHHHHHHTTCCEEEECC
T ss_pred hCCHHHHHHHHHHHHhCCEEEEEecCchHHHHHHHHHHHHhcCCCEEEecC
Confidence 456667888889999999999999988766666666666677888888883
No 103
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=28.26 E-value=35 Score=32.34 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=41.1
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEEC
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISA 383 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~~ 383 (403)
.+.+-|++|++-.|-.+.-....++.++++|+++|-| |...++....+|+.|.-
T Consensus 137 ~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~~I~~ 191 (306)
T 1nri_A 137 HFSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIET 191 (306)
T ss_dssp TCCTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEEC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCChHHHhCCEEEEc
Confidence 3568899999999999888889999999999997766 43445555566766654
No 104
>4hpq_A ATG31, KLTH0C07942P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=27.68 E-value=25 Score=26.43 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=12.6
Q ss_pred cccccceeEEeeccc
Q 015613 10 FNQKNTTMLLRLPFF 24 (403)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (403)
.|.+|||...||||-
T Consensus 1 Mn~~NttVyVRlPg~ 15 (69)
T 4hpq_A 1 MNSENTIVYVRVAGR 15 (69)
T ss_dssp CCSSSCEEEEECSSC
T ss_pred CCCCCeEEEEEecCC
Confidence 378899999999984
No 105
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=26.88 E-value=3.3e+02 Score=24.10 Aligned_cols=70 Identities=10% Similarity=0.152 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCC-------------CC--CCcccEEEECcHHH
Q 015613 323 RADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-------------RA--DDLTTLKISARLGE 387 (403)
Q Consensus 323 ~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t-------------~~--d~~~~l~I~~~~~e 387 (403)
+.+|-...+..+|.+|++.-+.-+ ...+ ..+...+.|++.+|...- .+ +...-+.+..+.++
T Consensus 108 f~~Rk~~m~~~sda~IvlpGG~GT--L~E~-~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee 184 (195)
T 1rcu_A 108 FQMRSFVLLRNADVVVSIGGEIGT--AIEI-LGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEE 184 (195)
T ss_dssp HHHHHHHHHTTCSEEEEESCCHHH--HHHH-HHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHH
T ss_pred HHHHHHHHHHhCCEEEEecCCCcH--HHHH-HHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHH
Confidence 345666777899999999765322 1222 233446899999984310 11 12234779999999
Q ss_pred HHHHHHHh
Q 015613 388 ILPRVLDV 395 (403)
Q Consensus 388 vL~~L~~~ 395 (403)
++..|.+.
T Consensus 185 ~~~~l~~~ 192 (195)
T 1rcu_A 185 AVQIIEQI 192 (195)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHH
Confidence 99887654
No 106
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=25.87 E-value=3.4e+02 Score=23.80 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=26.8
Q ss_pred hhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCC
Q 015613 332 KECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET 371 (403)
Q Consensus 332 ~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t 371 (403)
..+|.+|+.++.. ...+..+.+.|.|+|.||....
T Consensus 62 ~~vdgiIi~~~~~-----~~~~~~l~~~~iPvV~i~~~~~ 96 (276)
T 3jy6_A 62 RGFDGLILQSFSN-----PQTVQEILHQQMPVVSVDREMD 96 (276)
T ss_dssp TTCSEEEEESSCC-----HHHHHHHHTTSSCEEEESCCCT
T ss_pred CCCCEEEEecCCc-----HHHHHHHHHCCCCEEEEecccC
Confidence 4799999999876 3455556677999999997644
No 107
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=25.80 E-value=52 Score=28.89 Aligned_cols=44 Identities=9% Similarity=0.091 Sum_probs=35.3
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcC-CCCCC
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRA 373 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~-~~t~~ 373 (403)
.++..|.+|++-+|-...-.-+++..++++|.++|-|=. ..+..
T Consensus 74 ~i~~~D~vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs~~~~~~ 118 (170)
T 3jx9_A 74 TLHAVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITLGDVTET 118 (170)
T ss_dssp CCCTTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEEEESSCCCTT
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeCcchhcc
Confidence 567899999999998887678899999999999777644 55443
No 108
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.75 E-value=63 Score=26.45 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=34.0
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCCceee--ccceeeEEcCCCCcccch
Q 015613 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLEL--HGTVYTVVCLDCGFSFCR 243 (403)
Q Consensus 184 ~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~iel--HGs~~~~~C~~C~~~~~~ 243 (403)
...+...|+.|..|++.|.+..+-..| |...++. ++.-+.++|..||+..+.
T Consensus 42 ~is~~TVYR~L~~L~e~Glv~~~~~~~--------~~~~y~~~~~~~h~HliC~~Cg~v~~~ 95 (131)
T 2o03_A 42 NIGLTTVYRTLQSMASSGLVDTLHTDT--------GESVYRRCSEHHHHHLVCRSCGSTIEV 95 (131)
T ss_dssp CCCHHHHHHHHHHHHTTTSEEEEECTT--------SCEEEEECCSSSCEEEEETTTCCEEEE
T ss_pred CCCHhhHHHHHHHHHHCCCEEEEEeCC--------CceEEEeCCCCCCCEEEeCCCCCEEEE
Confidence 344567899999999999876544332 2112443 234567899999987653
No 109
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=25.64 E-value=1.7e+02 Score=24.65 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=36.0
Q ss_pred CCcHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEc
Q 015613 318 NVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN 367 (403)
Q Consensus 318 ~~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN 367 (403)
.++.+.++++.+.+.+++-++++|.+..-..+..+.....+-|.+...++
T Consensus 21 ~l~~~~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~ 70 (186)
T 1m3s_A 21 YISNEEADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVG 70 (186)
T ss_dssp TCCHHHHHHHHHHHHHCSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETT
T ss_pred hcCHHHHHHHHHHHHcCCeEEEEecCHHHHHHHHHHHHHHhcCCeEEEeC
Confidence 44566688888899999999999988765555566555556676665554
No 110
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.55 E-value=63 Score=27.26 Aligned_cols=52 Identities=23% Similarity=0.301 Sum_probs=33.2
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCCceee--ccceeeEEcCCCCcccch
Q 015613 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLEL--HGTVYTVVCLDCGFSFCR 243 (403)
Q Consensus 184 ~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~iel--HGs~~~~~C~~C~~~~~~ 243 (403)
...+...|+.|..|++.|.+..+-..+ |...+++ +..-+.++|.+||+..+.
T Consensus 49 ~is~aTVYR~L~~L~e~Glv~~~~~~~--------~~~~Y~~~~~~~H~HliC~~Cg~v~~~ 102 (150)
T 2w57_A 49 EIGLATVYRVLNQFDDAGIVTRHHFEG--------GKSVFELSTQHHHDHLVCLDCGEVIEF 102 (150)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEECGG--------GCEEEEECCSSCCEEEEETTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEEeCC--------CceEEEecCCCceeEEEECCCCCEEEe
Confidence 344567899999999999876543221 1111433 122356899999987654
No 111
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=25.36 E-value=1.9e+02 Score=27.32 Aligned_cols=20 Identities=10% Similarity=0.192 Sum_probs=13.8
Q ss_pred hHHHHHHHHHhCCCeEEEEc
Q 015613 348 SAYRLVRAAHEAGSTIAIVN 367 (403)
Q Consensus 348 p~~~lv~~a~~~g~~liiIN 367 (403)
-+.++++.|.+.+.|+|.+.
T Consensus 144 K~~r~ie~A~~~~lPlI~l~ 163 (285)
T 2f9i_B 144 KICRIIDYCTENRLPFILFS 163 (285)
T ss_dssp HHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEE
Confidence 35666677777788876665
No 112
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=24.15 E-value=1.6e+02 Score=25.28 Aligned_cols=48 Identities=13% Similarity=0.042 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcC
Q 015613 320 PKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV 368 (403)
Q Consensus 320 p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~ 368 (403)
+...++.-.++++.||++|.+++....--++.+- +|...|.|++.+..
T Consensus 55 ~~~i~~~d~~~i~~aD~vvA~l~~~d~Gt~~EiG-~A~algkPV~~l~~ 102 (152)
T 4fyk_A 55 DQFIHEQNLNWLQQADVVVAEVTQPSLGVGYELG-RAVALGKPILCLFR 102 (152)
T ss_dssp HHHHHHHHHHHHHHCSEEEEECSSCCHHHHHHHH-HHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHCCEEEEeCCCCCCCHHHHHH-HHHHcCCeEEEEEe
Confidence 4556777889999999999999855444444444 45567999888655
No 113
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=24.12 E-value=2.7e+02 Score=22.04 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=36.5
Q ss_pred ecCCCCcHHHHHHHHHHHh-hCCeEEEE--ccCcchhhHHHHHHHHHhCCCeEEEE
Q 015613 314 FFGDNVPKDRADKAMEAAK-ECDAFLVL--GSSLMTMSAYRLVRAAHEAGSTIAIV 366 (403)
Q Consensus 314 ~FgE~~p~~~~~~a~~~~~-~aDllLVV--GTSL~V~p~~~lv~~a~~~g~~liiI 366 (403)
.|++....+..+.+.+.++ ..++.++. |..+.--+...+++.+++.|.++.+|
T Consensus 59 ~~~~~~~~~~~~~i~~~~~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~vi 114 (117)
T 3hh1_A 59 SYHSFNEERAVRQVIELLEEGSDVALVTDAGTPAISDPGYTMASAAHAAGLPVVPV 114 (117)
T ss_dssp ECCSTTHHHHHHHHHHHHHTTCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEE
T ss_pred ccCCccHHHHHHHHHHHHHCCCeEEEEecCCcCeEeccHHHHHHHHHHCCCcEEEe
Confidence 4554444444555555554 46777766 98887788899999888888887665
No 114
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.91 E-value=28 Score=28.21 Aligned_cols=11 Identities=27% Similarity=0.685 Sum_probs=7.6
Q ss_pred CCCCCCCCCcc
Q 015613 298 IPTCQKCNGVL 308 (403)
Q Consensus 298 iP~Cp~Cgg~l 308 (403)
.+.||.|+.+|
T Consensus 61 ~a~CPdC~q~L 71 (101)
T 2jne_A 61 KALCPDCHQPL 71 (101)
T ss_dssp EEECTTTCSBC
T ss_pred cccCcchhhHH
Confidence 46788887654
No 115
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=23.45 E-value=52 Score=28.53 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=38.7
Q ss_pred HHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEE-cCCCCCCCCcccEEEE
Q 015613 330 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKIS 382 (403)
Q Consensus 330 ~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiI-N~~~t~~d~~~~l~I~ 382 (403)
.+.+-|++|++-.|-.+......++.++++|+++|.| +...++....+|+.|.
T Consensus 89 ~~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~ 142 (201)
T 3fxa_A 89 VLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFP 142 (201)
T ss_dssp GCCTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEE
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEE
Confidence 3567899999988888877788888888889998777 3344444455666654
No 116
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=23.38 E-value=54 Score=24.59 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=11.1
Q ss_pred cceeeEEcCCCCcc
Q 015613 227 GTVYTVVCLDCGFS 240 (403)
Q Consensus 227 Gs~~~~~C~~C~~~ 240 (403)
+.+-.++|++|+..
T Consensus 3 S~Fm~VKCp~C~ni 16 (66)
T 1qxf_A 3 SRFVKVKCPDCEHE 16 (66)
T ss_dssp CCEEEEECTTTCCE
T ss_pred ceeEEEECCCCCCc
Confidence 45778999999964
No 117
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=22.77 E-value=55 Score=33.46 Aligned_cols=28 Identities=25% Similarity=0.564 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 015613 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (403)
Q Consensus 107 p~~~~l~~l~~~l~~ak~IVVlTGAGIS 134 (403)
|..+.+++++++|++|++.||+.|.|.+
T Consensus 186 ~~~~~i~~~~~~l~~A~rpvIl~G~g~~ 213 (549)
T 3eya_A 186 PEEEELRKLAQLLRYSSNIALMCGSGCA 213 (549)
T ss_dssp CCHHHHHHHHHHHHTCCSEEEEECGGGT
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCch
Confidence 4467899999999999999999999975
No 118
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=22.63 E-value=33 Score=35.18 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=22.5
Q ss_pred hCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCCC
Q 015613 333 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET 371 (403)
Q Consensus 333 ~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~t 371 (403)
..|+ ||||.+..=..++. .+.++|.++++|-..+.
T Consensus 126 ~~DV-vVVGaG~aGl~aA~---~la~~G~~V~vlEk~~~ 160 (571)
T 1y0p_A 126 TVDV-VVVGSGGAGFSAAI---SATDSGAKVILIEKEPV 160 (571)
T ss_dssp ECSE-EEECCSHHHHHHHH---HHHHTTCCEEEECSSSS
T ss_pred CCCE-EEECCCHHHHHHHH---HHHHCCCcEEEEeCCCC
Confidence 4664 68888775443332 34456999999976653
No 119
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=22.11 E-value=79 Score=24.88 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=12.2
Q ss_pred EEcCCCCcccchhhHHHH
Q 015613 232 VVCLDCGFSFCRDLFQDQ 249 (403)
Q Consensus 232 ~~C~~C~~~~~~~~~~~~ 249 (403)
-+...||+.|.+..+...
T Consensus 42 PV~~~cGhtf~r~~I~~~ 59 (100)
T 2kre_A 42 PVRLPSGTIMDRSIILRH 59 (100)
T ss_dssp EEEETTTEEEEHHHHHHH
T ss_pred CeECCCCCEEchHHHHHH
Confidence 455568988888766543
No 120
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=22.09 E-value=1.9e+02 Score=25.01 Aligned_cols=49 Identities=12% Similarity=0.199 Sum_probs=36.0
Q ss_pred CcHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEc
Q 015613 319 VPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN 367 (403)
Q Consensus 319 ~p~~~~~~a~~~~~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN 367 (403)
++.+.++++.+.+.+++-++++|.+..-..+..+......-|.++..++
T Consensus 32 l~~~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~ 80 (200)
T 1vim_A 32 IDLETVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVG 80 (200)
T ss_dssp CCHHHHHHHHHHHHHSSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETT
T ss_pred cCHHHHHHHHHHHhcCCEEEEEEecHHHHHHHHHHHHHHhcCCeEEEeC
Confidence 3455678888889999999999987766666666666656677766654
No 121
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.05 E-value=55 Score=27.49 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=33.5
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCCceeec--cceeeEEcCCCCcccch
Q 015613 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCR 243 (403)
Q Consensus 184 ~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~ielH--Gs~~~~~C~~C~~~~~~ 243 (403)
...+...|+.|..|++.|.+..+-..| | ...+++. ..-+..+|.+||+..+.
T Consensus 49 ~is~~TVYR~L~~L~e~Glv~~i~~~~--~------~~~Y~~~~~~~H~HliC~~Cg~v~~~ 102 (145)
T 3eyy_A 49 GINISTVYRTLELLEELGLVSHAHLGH--G------APTYHLADRHHHIHLVCRDCTNVIEA 102 (145)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEEEECGG--G------CEEEEETTSCCSEEEEESSSSCEEEE
T ss_pred CCCHhHHHHHHHHHHHCCcEEEEEeCC--C------ceEEEeCCCCCceEEEECCCCCEEEe
Confidence 344557899999999999886654322 1 1113321 23356899999997653
No 122
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.58 E-value=96 Score=25.83 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=33.0
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCCceeecc-ceeeEEcCCCCcccch
Q 015613 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHG-TVYTVVCLDCGFSFCR 243 (403)
Q Consensus 184 ~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~ielHG-s~~~~~C~~C~~~~~~ 243 (403)
...+...|+.|..|++.|.+..+-..| |...+++.+ .-+..+|.+||+..+.
T Consensus 53 ~is~aTVYR~L~~L~e~Glv~~~~~~~--------~~~~Y~~~~~~H~HliC~~Cg~v~~~ 105 (145)
T 2fe3_A 53 NMSVATVYNNLRVFRESGLVKELTYGD--------ASSRFDFVTSDHYHAICENCGKIVDF 105 (145)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCTT--------SCCEEEECCCCEEEEEETTTCCEEEC
T ss_pred CCChhhHHHHHHHHHHCCCEEEEeeCC--------CceEEECCCCCcceEEECCCCCEEEe
Confidence 344567899999999999875543322 111133221 2346899999987653
No 123
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=21.20 E-value=1.1e+02 Score=29.73 Aligned_cols=54 Identities=7% Similarity=0.134 Sum_probs=42.2
Q ss_pred HhhCCeEEEEccCcchhhHHHHHHHHHhC-CCeE-EEEcCCCCCCCCcccEEEECc
Q 015613 331 AKECDAFLVLGSSLMTMSAYRLVRAAHEA-GSTI-AIVNVGETRADDLTTLKISAR 384 (403)
Q Consensus 331 ~~~aDllLVVGTSL~V~p~~~lv~~a~~~-g~~l-iiIN~~~t~~d~~~~l~I~~~ 384 (403)
+.+-|++|++-.|-.+.-....++.++++ |+++ .+.|...+++...+|+.|.-.
T Consensus 95 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~~Ga~vIaIT~~~~S~La~~ad~~l~~~ 150 (373)
T 2aml_A 95 SSHLDLVIGISQSGQSTSTISALERVKKEASVPVVALTSDVTSEIAEFADITLDIG 150 (373)
T ss_dssp CTTCCEEEEECSSSCBHHHHHHHHHHHHHCCCCEEEEESCTTSGGGGGCSEEEECS
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHhCCCcEEEEECCCCChHHHhcCcceecC
Confidence 56789999999999888888888989888 8775 455767677777777776543
No 124
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=21.17 E-value=1.5e+02 Score=24.96 Aligned_cols=14 Identities=21% Similarity=0.710 Sum_probs=8.7
Q ss_pred cCcEEecCCCCcHH
Q 015613 309 KPDVVFFGDNVPKD 322 (403)
Q Consensus 309 rP~Vv~FgE~~p~~ 322 (403)
.|.|+++|+++-..
T Consensus 20 ~prVl~iGDSit~G 33 (200)
T 4h08_A 20 LPHVLLIGNSITRG 33 (200)
T ss_dssp SCEEEEEESHHHHH
T ss_pred CCeEEEEchhHHhh
Confidence 45677777765443
No 125
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.89 E-value=81 Score=27.03 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=31.9
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEeccccchHHHhCCCceeec--cceeeEEcCCCCcccch
Q 015613 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCR 243 (403)
Q Consensus 184 ~a~Pn~~H~~La~L~~~gkl~~ViTQNIDgLh~rAG~~~ielH--Gs~~~~~C~~C~~~~~~ 243 (403)
...+...|+.|..|++.|.+..+-. ++ |...+++- ..-+..+|.+||+..+-
T Consensus 66 ~is~aTVYRtL~~L~e~Glv~~i~~---~~-----~~~~Y~~~~~~~H~HliC~~CG~v~e~ 119 (162)
T 4ets_A 66 NVGIATVYRTLNLLEEAEMVTSISF---GS-----AGKKYELANKPHHDHMICKNCGKIIEF 119 (162)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEECC-------------CCEEECCCCCCEEEEETTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEe---CC-----CceEEEeCCCCCccEEEECCCCCEEEe
Confidence 3456678999999999997754322 21 11123332 23455899999997653
No 126
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
Probab=20.58 E-value=1.3e+02 Score=28.70 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=39.7
Q ss_pred hhCCeEEEEccCcchhhHHHHHHHHHhCCCeEE-EEcCCCCCCCCcccEEEECc
Q 015613 332 KECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIA-IVNVGETRADDLTTLKISAR 384 (403)
Q Consensus 332 ~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~li-iIN~~~t~~d~~~~l~I~~~ 384 (403)
.+-|++|++--|-.+.-....++.++++|++++ +.|...++....+|+.|.-.
T Consensus 89 ~~~dl~i~iS~SG~T~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~ 142 (334)
T 3hba_A 89 LAGGLVIVISQSGRSPDILAQARMAKNAGAFCVALVNDETAPIKDIVDVVIPLR 142 (334)
T ss_dssp CTTCEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSGGGGTSSEEEECC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCEeeeec
Confidence 467899999888888888888888888898855 45666666667777665443
No 127
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=20.46 E-value=28 Score=28.19 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=12.8
Q ss_pred CCcEEEEeCCCCCcc
Q 015613 122 SAKLIVLTGAGISTE 136 (403)
Q Consensus 122 ak~IVVlTGAGISts 136 (403)
-++|++..|+|++++
T Consensus 21 ~kkIlvvC~sG~gTS 35 (113)
T 1tvm_A 21 KRKIIVACGGAVATS 35 (113)
T ss_dssp SEEEEEESCSCSSHH
T ss_pred ccEEEEECCCCHHHH
Confidence 357999999999987
No 128
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=20.37 E-value=4.6e+02 Score=23.34 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=25.8
Q ss_pred hhCCeEEEEccCcchhhHHHHHHHHHhCCCeEEEEcCCC
Q 015613 332 KECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGE 370 (403)
Q Consensus 332 ~~aDllLVVGTSL~V~p~~~lv~~a~~~g~~liiIN~~~ 370 (403)
..+|-+|++++...- ..+..+.+.|.|+|.|+...
T Consensus 82 ~~vdgiIi~~~~~~~----~~~~~l~~~~iPvV~i~~~~ 116 (305)
T 3huu_A 82 KSVDGFILLYSLKDD----PIEHLLNEFKVPYLIVGKSL 116 (305)
T ss_dssp TCCSEEEESSCBTTC----HHHHHHHHTTCCEEEESCCC
T ss_pred CCCCEEEEeCCcCCc----HHHHHHHHcCCCEEEECCCC
Confidence 479999999876532 34455566799999999765
Done!