Query 015614
Match_columns 403
No_of_seqs 245 out of 1708
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:57:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02520 bifunctional 3-dehydr 100.0 8.3E-99 2E-103 785.5 43.3 396 4-402 16-413 (529)
2 PRK09310 aroDE bifunctional 3- 100.0 2.1E-88 4.5E-93 699.8 40.2 362 12-402 1-366 (477)
3 PRK02412 aroD 3-dehydroquinate 100.0 2.4E-54 5.2E-59 412.4 26.1 229 5-233 10-250 (253)
4 TIGR01093 aroD 3-dehydroquinat 100.0 5.5E-53 1.2E-57 397.7 24.1 217 12-229 1-228 (228)
5 COG0710 AroD 3-dehydroquinate 100.0 7.4E-53 1.6E-57 391.2 24.0 222 10-232 1-228 (231)
6 PF01487 DHquinase_I: Type I 3 100.0 5.5E-53 1.2E-57 396.7 18.8 217 14-230 1-224 (224)
7 cd00502 DHQase_I Type I 3-dehy 100.0 4.2E-51 9.1E-56 384.2 24.1 215 12-230 1-224 (225)
8 PRK13575 3-dehydroquinate dehy 100.0 5.2E-50 1.1E-54 378.2 24.0 219 11-231 4-237 (238)
9 PRK13576 3-dehydroquinate dehy 100.0 7.8E-49 1.7E-53 363.8 20.8 204 9-232 1-206 (216)
10 COG0169 AroE Shikimate 5-dehyd 100.0 1E-47 2.3E-52 369.4 16.8 158 234-403 2-162 (283)
11 PRK14027 quinate/shikimate deh 100.0 5.7E-47 1.2E-51 366.7 16.1 153 237-403 3-163 (283)
12 PRK12749 quinate/shikimate deh 100.0 3.7E-46 7.9E-51 362.1 18.2 153 235-402 4-159 (288)
13 PRK12549 shikimate 5-dehydroge 100.0 1.4E-45 2.9E-50 357.9 16.8 153 236-403 3-163 (284)
14 PRK01261 aroD 3-dehydroquinate 100.0 1.8E-44 3.8E-49 337.8 22.6 206 4-232 14-226 (229)
15 TIGR01809 Shik-DH-AROM shikima 100.0 3.6E-45 7.7E-50 354.9 16.1 153 238-403 5-161 (282)
16 PRK12548 shikimate 5-dehydroge 100.0 1.1E-44 2.5E-49 352.6 17.6 153 234-401 5-160 (289)
17 PRK00258 aroE shikimate 5-dehy 100.0 3.3E-44 7.1E-49 347.7 16.3 154 235-402 2-158 (278)
18 PRK12550 shikimate 5-dehydroge 100.0 5.1E-44 1.1E-48 344.1 17.0 152 234-403 5-158 (272)
19 TIGR00507 aroE shikimate 5-deh 100.0 2E-42 4.4E-47 333.8 16.5 149 239-402 1-151 (270)
20 KOG0692 Pentafunctional AROM p 100.0 5E-31 1.1E-35 260.9 -3.9 357 34-400 118-488 (595)
21 PF08501 Shikimate_dh_N: Shiki 100.0 4.2E-29 9.1E-34 198.7 6.3 81 243-323 1-83 (83)
22 PRK14192 bifunctional 5,10-met 99.8 3.9E-19 8.5E-24 172.1 11.3 128 254-400 51-192 (283)
23 PF01488 Shikimate_DH: Shikima 98.5 6.2E-08 1.3E-12 84.0 3.6 39 365-403 9-48 (135)
24 PRK08291 ectoine utilization p 98.5 9.6E-08 2.1E-12 95.1 4.3 72 315-403 96-169 (330)
25 TIGR02992 ectoine_eutC ectoine 98.3 4.5E-07 9.7E-12 90.1 4.6 71 316-403 94-166 (326)
26 cd01065 NAD_bind_Shikimate_DH 98.1 4.6E-06 9.9E-11 73.2 6.3 53 337-402 1-54 (155)
27 cd05311 NAD_bind_2_malic_enz N 97.7 8E-05 1.7E-09 70.3 7.0 48 340-400 10-60 (226)
28 PRK00045 hemA glutamyl-tRNA re 97.5 1.2E-05 2.6E-10 82.8 -1.7 92 299-402 113-217 (423)
29 PRK13940 glutamyl-tRNA reducta 97.5 8.3E-05 1.8E-09 76.2 4.0 39 365-403 178-217 (414)
30 cd05191 NAD_bind_amino_acid_DH 97.3 0.0013 2.8E-08 52.3 7.6 53 338-399 2-55 (86)
31 cd01078 NAD_bind_H4MPT_DH NADP 97.1 0.00099 2.1E-08 61.0 5.8 60 334-402 3-63 (194)
32 PRK14175 bifunctional 5,10-met 96.6 0.013 2.9E-07 57.0 10.0 125 258-400 54-191 (286)
33 cd04726 KGPDC_HPS 3-Keto-L-gul 96.6 0.07 1.5E-06 48.8 14.5 130 11-159 1-132 (202)
34 COG0373 HemA Glutamyl-tRNA red 96.6 0.0019 4.1E-08 65.8 3.9 39 365-403 175-214 (414)
35 TIGR02853 spore_dpaA dipicolin 96.5 0.0029 6.4E-08 61.8 4.7 39 364-402 147-185 (287)
36 cd01080 NAD_bind_m-THF_DH_Cycl 96.5 0.0071 1.5E-07 54.5 6.4 37 365-401 41-78 (168)
37 PRK11572 copper homeostasis pr 96.3 0.33 7.2E-06 46.3 17.1 147 18-176 7-164 (248)
38 PRK00676 hemA glutamyl-tRNA re 96.3 0.0057 1.2E-07 60.9 5.3 38 365-402 171-209 (338)
39 cd01075 NAD_bind_Leu_Phe_Val_D 96.3 0.0098 2.1E-07 55.0 6.5 57 339-402 6-62 (200)
40 cd00958 DhnA Class I fructose- 96.3 0.16 3.4E-06 47.9 14.7 151 23-186 21-185 (235)
41 PRK14194 bifunctional 5,10-met 96.2 0.04 8.7E-07 54.1 10.7 126 258-401 55-193 (301)
42 PRK00043 thiE thiamine-phospha 96.2 0.17 3.7E-06 46.5 14.4 108 23-160 21-131 (212)
43 PRK09140 2-dehydro-3-deoxy-6-p 96.2 0.22 4.7E-06 46.4 15.0 120 12-159 11-130 (206)
44 PRK08306 dipicolinate synthase 96.2 0.0057 1.2E-07 60.0 4.6 38 365-402 149-186 (296)
45 cd04740 DHOD_1B_like Dihydroor 96.0 0.2 4.4E-06 48.9 14.6 84 12-104 91-185 (296)
46 PLN00203 glutamyl-tRNA reducta 95.9 0.0071 1.5E-07 63.8 4.3 38 366-403 264-302 (519)
47 PRK07455 keto-hydroxyglutarate 95.9 0.068 1.5E-06 48.9 10.2 119 12-159 13-131 (187)
48 cd07937 DRE_TIM_PC_TC_5S Pyruv 95.8 1.2 2.5E-05 43.3 18.8 204 24-230 22-245 (275)
49 PRK14188 bifunctional 5,10-met 95.6 0.07 1.5E-06 52.3 9.4 126 258-401 54-193 (296)
50 TIGR03128 RuMP_HxlA 3-hexulose 95.6 0.15 3.2E-06 46.9 11.1 130 12-159 1-132 (206)
51 PRK08328 hypothetical protein; 95.5 0.016 3.5E-07 54.7 4.4 35 366-400 25-60 (231)
52 PF13241 NAD_binding_7: Putati 95.3 0.019 4.2E-07 47.1 3.7 36 365-400 4-39 (103)
53 PF00670 AdoHcyase_NAD: S-aden 95.3 0.051 1.1E-06 48.5 6.6 38 364-401 19-56 (162)
54 cd00958 DhnA Class I fructose- 95.3 0.51 1.1E-05 44.4 13.8 138 14-157 65-211 (235)
55 cd00945 Aldolase_Class_I Class 95.3 1.7 3.7E-05 38.9 16.8 141 21-175 11-168 (201)
56 cd05213 NAD_bind_Glutamyl_tRNA 95.3 0.019 4.1E-07 56.7 4.1 37 366-402 176-213 (311)
57 TIGR01035 hemA glutamyl-tRNA r 95.2 0.02 4.2E-07 59.0 4.3 37 366-402 178-215 (417)
58 cd02940 DHPD_FMN Dihydropyrimi 95.1 0.75 1.6E-05 45.1 15.0 84 10-103 100-198 (299)
59 TIGR01108 oadA oxaloacetate de 95.1 2.6 5.6E-05 45.4 20.1 205 23-230 21-245 (582)
60 cd00452 KDPG_aldolase KDPG and 95.1 0.87 1.9E-05 41.5 14.5 119 12-159 5-123 (190)
61 PRK14176 bifunctional 5,10-met 95.1 0.15 3.3E-06 49.7 9.6 124 258-399 60-196 (287)
62 PRK10792 bifunctional 5,10-met 95.0 0.13 2.8E-06 50.2 9.0 125 258-400 55-192 (285)
63 PRK05476 S-adenosyl-L-homocyst 95.0 0.051 1.1E-06 55.9 6.6 40 364-403 208-247 (425)
64 PF03932 CutC: CutC family; I 95.0 0.82 1.8E-05 42.4 13.8 125 19-155 7-142 (201)
65 PRK06141 ornithine cyclodeamin 94.9 0.042 9.1E-07 54.4 5.3 37 367-403 124-162 (314)
66 PRK08762 molybdopterin biosynt 94.7 0.033 7.1E-07 56.5 4.3 34 367-400 134-168 (376)
67 TIGR00518 alaDH alanine dehydr 94.7 0.031 6.8E-07 56.6 4.1 36 367-402 166-201 (370)
68 PRK14189 bifunctional 5,10-met 94.7 0.2 4.4E-06 48.8 9.5 124 258-399 54-190 (285)
69 PRK08644 thiamine biosynthesis 94.7 0.041 8.9E-07 51.4 4.5 35 366-400 26-61 (212)
70 cd02810 DHOD_DHPD_FMN Dihydroo 94.7 0.37 8E-06 46.8 11.4 87 13-106 101-197 (289)
71 PRK12330 oxaloacetate decarbox 94.6 4 8.7E-05 43.0 19.2 211 21-232 25-255 (499)
72 PRK01130 N-acetylmannosamine-6 94.5 2.7 5.8E-05 39.2 16.3 116 23-159 23-145 (221)
73 cd03174 DRE_TIM_metallolyase D 94.4 4.6 9.9E-05 38.3 18.7 198 21-231 17-244 (265)
74 PRK05690 molybdopterin biosynt 94.3 0.06 1.3E-06 51.4 4.8 35 366-400 30-65 (245)
75 PRK13111 trpA tryptophan synth 94.3 4.9 0.00011 38.7 17.9 86 12-104 15-123 (258)
76 TIGR00693 thiE thiamine-phosph 94.3 1.4 2.9E-05 40.1 13.6 106 23-159 13-122 (196)
77 cd00401 AdoHcyase S-adenosyl-L 94.3 0.087 1.9E-06 54.1 6.1 40 364-403 198-237 (413)
78 PF02826 2-Hacid_dh_C: D-isome 94.2 0.094 2E-06 47.4 5.7 38 364-401 32-69 (178)
79 PRK15116 sulfur acceptor prote 94.1 0.069 1.5E-06 51.7 4.7 35 366-400 28-63 (268)
80 PRK14172 bifunctional 5,10-met 94.1 0.46 9.9E-06 46.2 10.3 124 258-399 54-190 (278)
81 PRK12331 oxaloacetate decarbox 94.1 8.7 0.00019 40.0 20.4 206 23-231 26-251 (448)
82 PRK14180 bifunctional 5,10-met 94.0 0.2 4.4E-06 48.7 7.9 123 259-399 54-190 (282)
83 PRK14191 bifunctional 5,10-met 94.0 0.26 5.6E-06 48.1 8.5 123 258-398 53-188 (285)
84 cd04729 NanE N-acetylmannosami 93.9 3.1 6.6E-05 38.7 15.5 117 23-159 27-149 (219)
85 cd04722 TIM_phosphate_binding 93.9 4.2 9E-05 35.9 17.2 125 23-163 12-146 (200)
86 PRK07340 ornithine cyclodeamin 93.8 0.063 1.4E-06 52.9 4.0 37 367-403 124-162 (304)
87 PRK05597 molybdopterin biosynt 93.8 0.079 1.7E-06 53.4 4.8 35 366-400 26-61 (355)
88 PF13450 NAD_binding_8: NAD(P) 93.8 0.11 2.5E-06 39.2 4.5 29 373-401 1-29 (68)
89 PF00070 Pyr_redox: Pyridine n 93.8 0.15 3.2E-06 39.5 5.2 32 370-401 1-32 (80)
90 PRK14177 bifunctional 5,10-met 93.7 0.38 8.2E-06 46.9 9.1 124 258-399 55-191 (284)
91 TIGR02320 PEP_mutase phosphoen 93.7 3.6 7.8E-05 40.2 15.9 121 56-184 70-215 (285)
92 cd00945 Aldolase_Class_I Class 93.7 3.3 7.2E-05 37.0 14.9 93 10-107 48-151 (201)
93 PRK14169 bifunctional 5,10-met 93.6 0.47 1E-05 46.2 9.5 125 258-400 52-190 (282)
94 PRK14183 bifunctional 5,10-met 93.6 0.54 1.2E-05 45.8 9.9 124 258-399 53-189 (281)
95 PRK07259 dihydroorotate dehydr 93.6 0.34 7.3E-06 47.5 8.7 83 13-104 94-188 (301)
96 TIGR00936 ahcY adenosylhomocys 93.6 0.11 2.4E-06 53.2 5.4 39 364-402 191-229 (406)
97 PF13738 Pyr_redox_3: Pyridine 93.6 0.098 2.1E-06 47.4 4.6 38 365-402 164-201 (203)
98 cd00959 DeoC 2-deoxyribose-5-p 93.6 6 0.00013 36.4 17.8 143 19-177 13-172 (203)
99 PRK08618 ornithine cyclodeamin 93.6 0.067 1.5E-06 53.2 3.7 37 367-403 126-164 (325)
100 PRK05600 thiamine biosynthesis 93.5 0.092 2E-06 53.2 4.7 35 366-400 39-74 (370)
101 PRK10415 tRNA-dihydrouridine s 93.5 2.9 6.3E-05 41.5 15.2 150 13-195 67-232 (321)
102 PRK06153 hypothetical protein; 93.5 0.074 1.6E-06 53.8 3.9 34 367-400 175-209 (393)
103 PTZ00075 Adenosylhomocysteinas 93.5 0.24 5.1E-06 51.7 7.6 39 364-402 250-288 (476)
104 CHL00200 trpA tryptophan synth 93.4 5.3 0.00012 38.6 16.4 127 12-175 18-166 (263)
105 PRK08223 hypothetical protein; 93.4 0.092 2E-06 51.2 4.3 35 366-400 25-60 (287)
106 COG0190 FolD 5,10-methylene-te 93.3 1.2 2.6E-05 43.3 11.7 137 242-399 36-188 (283)
107 PRK14182 bifunctional 5,10-met 93.3 0.47 1E-05 46.2 8.9 124 258-399 52-189 (282)
108 PLN02494 adenosylhomocysteinas 93.2 0.14 3.1E-06 53.1 5.6 39 364-402 250-288 (477)
109 PRK14179 bifunctional 5,10-met 93.1 0.51 1.1E-05 46.0 8.9 123 258-398 54-189 (284)
110 cd00429 RPE Ribulose-5-phospha 93.0 1.8 4E-05 39.5 12.2 109 13-132 2-114 (211)
111 cd02801 DUS_like_FMN Dihydrour 93.0 0.68 1.5E-05 43.2 9.4 89 11-105 55-158 (231)
112 cd04740 DHOD_1B_like Dihydroor 93.0 1.9 4E-05 42.1 12.8 87 63-160 88-186 (296)
113 cd00564 TMP_TenI Thiamine mono 92.9 3 6.5E-05 37.3 13.3 107 23-159 12-121 (196)
114 PRK05866 short chain dehydroge 92.9 0.15 3.3E-06 49.6 5.0 38 364-401 36-74 (293)
115 PF03807 F420_oxidored: NADP o 92.9 0.095 2.1E-06 41.8 3.0 33 370-402 1-37 (96)
116 PRK14173 bifunctional 5,10-met 92.9 0.65 1.4E-05 45.4 9.3 123 259-399 52-187 (287)
117 PRK14166 bifunctional 5,10-met 92.9 0.4 8.7E-06 46.7 7.8 123 259-399 53-189 (282)
118 PRK14170 bifunctional 5,10-met 92.7 0.71 1.5E-05 45.0 9.3 124 258-399 53-189 (284)
119 PRK09282 pyruvate carboxylase 92.7 14 0.00031 39.9 20.0 205 22-230 25-250 (592)
120 PLN02591 tryptophan synthase 92.7 9.7 0.00021 36.5 18.6 85 13-104 6-112 (250)
121 PRK07028 bifunctional hexulose 92.7 3.6 7.8E-05 42.5 15.0 134 10-160 3-138 (430)
122 PF01791 DeoC: DeoC/LacD famil 92.7 1.1 2.4E-05 42.2 10.4 141 11-156 55-224 (236)
123 TIGR00736 nifR3_rel_arch TIM-b 92.5 4.2 9.1E-05 38.5 14.0 132 12-161 69-221 (231)
124 PRK12769 putative oxidoreducta 92.4 0.18 3.9E-06 54.9 5.3 36 366-401 325-360 (654)
125 PRK06196 oxidoreductase; Provi 92.4 0.16 3.5E-06 49.8 4.5 38 365-402 23-61 (315)
126 PRK14187 bifunctional 5,10-met 92.3 1.2 2.5E-05 43.8 10.2 124 258-399 54-192 (294)
127 PRK12779 putative bifunctional 92.2 0.2 4.3E-06 56.9 5.4 36 366-401 304-339 (944)
128 PRK14167 bifunctional 5,10-met 92.2 0.65 1.4E-05 45.6 8.3 124 258-399 53-193 (297)
129 PRK13813 orotidine 5'-phosphat 92.2 6.8 0.00015 36.2 15.0 135 10-158 3-144 (215)
130 PLN02780 ketoreductase/ oxidor 92.2 0.14 3E-06 50.7 3.7 36 367-402 52-88 (320)
131 PRK14041 oxaloacetate decarbox 92.0 18 0.00038 38.0 20.0 209 22-231 24-250 (467)
132 PRK14171 bifunctional 5,10-met 92.0 1.3 2.9E-05 43.2 10.2 123 258-398 54-190 (288)
133 PRK14193 bifunctional 5,10-met 92.0 1.3 2.9E-05 43.1 10.2 124 258-399 54-192 (284)
134 PRK14186 bifunctional 5,10-met 91.9 1 2.2E-05 44.3 9.2 124 258-399 54-190 (297)
135 PRK07878 molybdopterin biosynt 91.8 0.18 4E-06 51.4 4.3 34 367-400 41-75 (392)
136 PF01791 DeoC: DeoC/LacD famil 91.7 2.4 5.2E-05 39.9 11.5 148 24-182 20-191 (236)
137 TIGR01381 E1_like_apg7 E1-like 91.7 0.2 4.3E-06 53.9 4.4 35 366-400 336-371 (664)
138 PRK09424 pntA NAD(P) transhydr 91.7 0.18 3.9E-06 53.2 4.1 36 367-402 164-199 (509)
139 COG1179 Dinucleotide-utilizing 91.7 0.19 4.2E-06 47.6 3.8 35 366-400 28-63 (263)
140 PLN02928 oxidoreductase family 91.7 0.3 6.6E-06 49.0 5.5 36 365-400 156-191 (347)
141 cd04739 DHOD_like Dihydroorota 91.5 1.8 3.9E-05 43.0 10.8 90 9-108 99-198 (325)
142 cd02810 DHOD_DHPD_FMN Dihydroo 91.5 4.8 0.0001 39.0 13.6 91 63-162 97-198 (289)
143 PRK14190 bifunctional 5,10-met 91.5 1.3 2.7E-05 43.3 9.4 124 258-399 54-190 (284)
144 PRK06567 putative bifunctional 91.5 0.25 5.5E-06 55.7 5.1 35 366-400 381-415 (1028)
145 PRK07411 hypothetical protein; 91.3 0.23 5E-06 50.7 4.3 35 366-400 36-71 (390)
146 PRK12771 putative glutamate sy 91.3 0.32 7E-06 52.0 5.6 35 366-400 135-169 (564)
147 PRK09853 putative selenate red 91.2 0.29 6.2E-06 55.6 5.3 35 366-400 537-571 (1019)
148 PRK13243 glyoxylate reductase; 91.2 0.36 7.8E-06 48.2 5.5 37 365-401 147-183 (333)
149 TIGR00737 nifR3_yhdG putative 91.2 2 4.2E-05 42.6 10.7 91 9-105 62-167 (319)
150 PRK14040 oxaloacetate decarbox 91.2 12 0.00025 40.5 17.2 152 22-177 26-194 (593)
151 PRK13307 bifunctional formalde 91.2 3.2 6.9E-05 42.4 12.3 133 9-160 171-306 (391)
152 PRK07259 dihydroorotate dehydr 91.2 3.2 6.8E-05 40.6 12.1 39 63-109 90-129 (301)
153 PRK14031 glutamate dehydrogena 91.1 0.71 1.5E-05 47.8 7.7 53 337-398 206-258 (444)
154 PRK07226 fructose-bisphosphate 91.1 6.6 0.00014 37.8 14.1 152 21-187 37-203 (267)
155 TIGR01949 AroFGH_arch predicte 91.1 3.1 6.8E-05 39.8 11.7 152 20-186 33-198 (258)
156 TIGR03315 Se_ygfK putative sel 91.1 0.29 6.2E-06 55.7 5.1 34 367-400 536-569 (1012)
157 PLN02852 ferredoxin-NADP+ redu 91.0 0.38 8.3E-06 50.6 5.7 36 366-401 24-61 (491)
158 PRK14184 bifunctional 5,10-met 91.0 1.3 2.7E-05 43.4 8.9 117 259-399 54-193 (286)
159 PRK12775 putative trifunctiona 91.0 0.39 8.4E-06 55.0 6.2 34 367-400 429-462 (1006)
160 TIGR01496 DHPS dihydropteroate 91.0 8.8 0.00019 36.9 14.7 156 1-177 3-190 (257)
161 PRK12831 putative oxidoreducta 90.9 0.38 8.1E-06 50.2 5.5 35 366-400 138-172 (464)
162 TIGR00742 yjbN tRNA dihydrouri 90.9 10 0.00022 37.7 15.3 95 10-108 55-164 (318)
163 PRK05581 ribulose-phosphate 3- 90.9 5.3 0.00011 36.8 12.7 110 11-131 4-117 (220)
164 cd07944 DRE_TIM_HOA_like 4-hyd 90.9 14 0.00031 35.6 16.0 191 29-230 26-236 (266)
165 TIGR01949 AroFGH_arch predicte 90.9 6.5 0.00014 37.6 13.7 139 10-155 70-222 (258)
166 PRK12810 gltD glutamate syntha 90.9 0.37 8.1E-06 50.3 5.5 36 366-401 141-176 (471)
167 PRK14178 bifunctional 5,10-met 90.8 0.96 2.1E-05 44.0 7.8 125 258-400 48-185 (279)
168 PRK12809 putative oxidoreducta 90.8 0.34 7.4E-06 52.7 5.3 35 367-401 309-343 (639)
169 PRK14181 bifunctional 5,10-met 90.7 1.1 2.3E-05 43.9 8.0 124 258-399 48-189 (287)
170 PRK14174 bifunctional 5,10-met 90.6 1.1 2.4E-05 44.0 8.1 120 258-400 53-196 (295)
171 PRK13802 bifunctional indole-3 90.6 19 0.00042 39.6 18.3 107 29-159 76-186 (695)
172 PLN03209 translocon at the inn 90.5 0.3 6.6E-06 52.1 4.4 37 366-402 78-115 (576)
173 TIGR01316 gltA glutamate synth 90.5 0.43 9.2E-06 49.6 5.5 35 366-400 131-165 (449)
174 PRK12480 D-lactate dehydrogena 90.5 0.41 8.9E-06 47.7 5.1 37 365-401 143-179 (330)
175 PLN02334 ribulose-phosphate 3- 90.5 15 0.00033 34.4 16.4 112 9-131 6-123 (229)
176 PRK10550 tRNA-dihydrouridine s 90.5 2.7 5.8E-05 41.6 10.8 88 13-106 65-169 (312)
177 TIGR03217 4OH_2_O_val_ald 4-hy 90.4 21 0.00045 35.7 18.1 199 17-230 21-241 (333)
178 PRK13125 trpA tryptophan synth 90.4 16 0.00036 34.6 16.4 84 13-104 8-107 (244)
179 cd05313 NAD_bind_2_Glu_DH NAD( 90.3 1.1 2.4E-05 43.1 7.7 52 338-398 17-69 (254)
180 PRK06701 short chain dehydroge 90.3 0.48 1E-05 45.9 5.4 37 365-401 43-80 (290)
181 cd00331 IGPS Indole-3-glycerol 90.3 15 0.00032 34.0 16.1 111 25-157 33-145 (217)
182 PRK11749 dihydropyrimidine deh 90.3 0.42 9.1E-06 49.6 5.2 36 366-401 138-173 (457)
183 PRK07226 fructose-bisphosphate 90.2 5.6 0.00012 38.3 12.6 125 23-155 93-226 (267)
184 PRK14982 acyl-ACP reductase; P 90.2 0.36 7.8E-06 48.3 4.4 39 364-402 151-192 (340)
185 cd07944 DRE_TIM_HOA_like 4-hyd 90.1 5.2 0.00011 38.6 12.3 105 70-183 5-125 (266)
186 PRK12814 putative NADPH-depend 90.1 0.46 1E-05 51.8 5.5 35 367-401 192-226 (652)
187 KOG1208 Dehydrogenases with di 90.0 0.38 8.3E-06 47.6 4.4 39 364-402 31-70 (314)
188 cd01076 NAD_bind_1_Glu_DH NAD( 90.0 1.2 2.6E-05 42.0 7.5 52 339-399 11-63 (227)
189 PLN02897 tetrahydrofolate dehy 89.8 2 4.4E-05 42.9 9.3 118 259-399 109-246 (345)
190 PRK07985 oxidoreductase; Provi 89.8 0.52 1.1E-05 45.8 5.2 35 366-400 47-82 (294)
191 PRK06552 keto-hydroxyglutarate 89.8 14 0.0003 34.5 14.4 120 12-159 14-135 (213)
192 cd02911 arch_FMN Archeal FMN-b 89.8 13 0.00028 35.2 14.4 132 12-162 74-222 (233)
193 PLN02516 methylenetetrahydrofo 89.8 1.7 3.6E-05 42.8 8.6 123 259-399 62-199 (299)
194 cd04731 HisF The cyclase subun 89.7 13 0.00029 35.0 14.6 192 19-229 26-240 (243)
195 PRK12778 putative bifunctional 89.7 0.52 1.1E-05 52.2 5.6 35 366-400 429-463 (752)
196 PRK07424 bifunctional sterol d 89.6 0.46 9.9E-06 48.8 4.7 37 366-402 176-213 (406)
197 PRK15469 ghrA bifunctional gly 89.5 0.74 1.6E-05 45.5 6.0 38 365-402 133-170 (312)
198 PRK04176 ribulose-1,5-biphosph 89.5 0.52 1.1E-05 45.2 4.8 33 369-401 26-58 (257)
199 PRK14185 bifunctional 5,10-met 89.4 2 4.3E-05 42.1 8.7 123 258-398 53-192 (293)
200 COG2072 TrkA Predicted flavopr 89.1 0.54 1.2E-05 48.8 4.9 39 364-402 171-209 (443)
201 cd08205 RuBisCO_IV_RLP Ribulos 89.0 28 0.0006 35.3 19.3 109 58-174 123-244 (367)
202 TIGR01318 gltD_gamma_fam gluta 89.0 0.62 1.3E-05 48.7 5.3 36 366-401 139-174 (467)
203 PLN02616 tetrahydrofolate dehy 88.9 2.4 5.1E-05 42.7 9.0 123 259-399 126-263 (364)
204 PLN02477 glutamate dehydrogena 88.9 1.4 3E-05 45.4 7.6 54 338-400 185-239 (410)
205 TIGR01163 rpe ribulose-phospha 88.9 5.3 0.00012 36.4 11.0 80 15-105 3-86 (210)
206 PRK11858 aksA trans-homoaconit 88.9 15 0.00032 37.3 15.1 140 23-177 26-184 (378)
207 PRK11815 tRNA-dihydrouridine s 88.8 4.5 9.7E-05 40.4 11.0 90 13-105 67-171 (333)
208 PRK12581 oxaloacetate decarbox 88.8 34 0.00073 35.9 19.8 205 23-230 35-259 (468)
209 KOG1014 17 beta-hydroxysteroid 88.8 0.42 9.1E-06 46.9 3.5 36 368-403 49-85 (312)
210 COG1635 THI4 Ribulose 1,5-bisp 88.7 0.56 1.2E-05 44.1 4.1 33 369-401 31-63 (262)
211 KOG3040 Predicted sugar phosph 88.7 8.5 0.00018 35.9 11.6 175 83-296 49-226 (262)
212 PF00682 HMGL-like: HMGL-like 88.6 17 0.00037 33.9 14.4 197 23-230 14-234 (237)
213 PRK01747 mnmC bifunctional tRN 88.6 0.53 1.2E-05 51.3 4.7 32 369-400 261-292 (662)
214 PRK14851 hypothetical protein; 88.6 0.5 1.1E-05 51.7 4.4 35 366-400 41-76 (679)
215 PRK06128 oxidoreductase; Provi 88.4 0.72 1.6E-05 44.8 5.0 35 366-400 53-88 (300)
216 cd07948 DRE_TIM_HCS Saccharomy 88.4 16 0.00035 35.2 14.2 191 23-230 22-237 (262)
217 PLN00093 geranylgeranyl diphos 88.2 0.68 1.5E-05 48.2 5.0 33 369-401 40-72 (450)
218 PRK06436 glycerate dehydrogena 88.2 0.9 1.9E-05 44.8 5.5 37 365-401 119-155 (303)
219 PRK13984 putative oxidoreducta 88.1 0.74 1.6E-05 49.6 5.4 36 366-401 281-316 (604)
220 cd04735 OYE_like_4_FMN Old yel 88.1 4.1 8.8E-05 41.0 10.4 87 17-106 134-256 (353)
221 PRK15317 alkyl hydroperoxide r 87.9 39 0.00085 35.6 20.7 32 368-399 211-242 (517)
222 PRK05718 keto-hydroxyglutarate 87.9 12 0.00027 34.9 12.7 119 12-159 16-134 (212)
223 TIGR00561 pntA NAD(P) transhyd 87.8 0.56 1.2E-05 49.4 4.1 36 367-402 163-198 (511)
224 PF02581 TMP-TENI: Thiamine mo 87.8 14 0.0003 33.2 12.7 134 23-187 12-156 (180)
225 cd02933 OYE_like_FMN Old yello 87.8 5.4 0.00012 39.9 10.9 76 29-106 158-262 (338)
226 KOG1298 Squalene monooxygenase 87.7 0.68 1.5E-05 46.8 4.3 32 370-401 47-78 (509)
227 PRK09880 L-idonate 5-dehydroge 87.7 0.64 1.4E-05 46.0 4.2 36 367-402 169-205 (343)
228 TIGR00736 nifR3_rel_arch TIM-b 87.7 23 0.00049 33.6 14.4 117 55-185 60-196 (231)
229 TIGR01182 eda Entner-Doudoroff 87.6 6.8 0.00015 36.4 10.7 121 12-161 9-129 (204)
230 COG1064 AdhP Zn-dependent alco 87.6 0.72 1.6E-05 46.1 4.5 37 367-403 166-202 (339)
231 PLN02985 squalene monooxygenas 87.2 1.1 2.3E-05 47.6 5.8 34 368-401 43-76 (514)
232 TIGR00126 deoC deoxyribose-pho 87.2 25 0.00055 32.7 15.1 141 20-177 15-173 (211)
233 PRK07565 dihydroorotate dehydr 87.2 6.3 0.00014 39.3 11.0 85 12-105 103-197 (334)
234 PRK05562 precorrin-2 dehydroge 87.2 1 2.2E-05 42.4 5.0 37 364-400 21-57 (223)
235 PLN02927 antheraxanthin epoxid 87.1 0.79 1.7E-05 50.0 4.8 35 367-401 80-114 (668)
236 PRK15438 erythronate-4-phospha 87.1 1.3 2.9E-05 44.9 6.2 37 364-400 112-148 (378)
237 PLN02463 lycopene beta cyclase 87.0 0.8 1.7E-05 47.6 4.6 33 369-401 29-61 (447)
238 PRK00257 erythronate-4-phospha 87.0 1.4 3.1E-05 44.8 6.4 37 364-400 112-148 (381)
239 COG3142 CutC Uncharacterized p 87.0 28 0.0006 32.9 14.5 152 29-190 14-180 (241)
240 PRK00366 ispG 4-hydroxy-3-meth 87.0 14 0.00031 37.0 13.0 148 20-183 39-204 (360)
241 PTZ00079 NADP-specific glutama 86.9 2.2 4.8E-05 44.3 7.7 55 337-400 215-270 (454)
242 PRK14168 bifunctional 5,10-met 86.7 4.6 0.0001 39.7 9.4 124 258-399 55-197 (297)
243 PRK08324 short chain dehydroge 86.7 0.73 1.6E-05 50.5 4.3 38 365-402 419-457 (681)
244 cd05212 NAD_bind_m-THF_DH_Cycl 86.5 2.6 5.5E-05 36.8 6.8 36 364-399 24-60 (140)
245 PRK07574 formate dehydrogenase 86.5 1.1 2.4E-05 45.7 5.2 37 365-401 189-225 (385)
246 PRK12858 tagatose 1,6-diphosph 86.4 28 0.00061 34.9 15.1 163 18-190 44-251 (340)
247 PRK05579 bifunctional phosphop 86.4 2.2 4.8E-05 43.7 7.4 54 336-400 167-237 (399)
248 cd08230 glucose_DH Glucose deh 86.4 0.79 1.7E-05 45.6 4.1 34 367-400 172-205 (355)
249 TIGR01317 GOGAT_sm_gam glutama 86.4 1.1 2.4E-05 47.0 5.4 34 367-400 142-175 (485)
250 TIGR00612 ispG_gcpE 1-hydroxy- 86.2 3.1 6.8E-05 41.3 7.9 48 136-185 30-77 (346)
251 PRK06481 fumarate reductase fl 86.2 0.91 2E-05 47.9 4.6 33 369-401 62-94 (506)
252 PTZ00245 ubiquitin activating 86.2 0.92 2E-05 43.6 4.1 35 366-400 24-59 (287)
253 cd02932 OYE_YqiM_FMN Old yello 86.2 6.8 0.00015 39.0 10.6 77 25-104 156-260 (336)
254 cd04730 NPD_like 2-Nitropropan 86.2 11 0.00024 35.1 11.5 127 10-161 3-130 (236)
255 PRK08605 D-lactate dehydrogena 86.1 1.1 2.3E-05 44.8 4.8 37 365-401 143-180 (332)
256 PRK14852 hypothetical protein; 86.1 0.8 1.7E-05 51.7 4.2 106 124-229 84-206 (989)
257 TIGR02090 LEU1_arch isopropylm 86.0 30 0.00064 35.0 15.2 198 15-230 17-237 (363)
258 cd05312 NAD_bind_1_malic_enz N 86.0 1.7 3.6E-05 42.4 5.9 37 364-400 21-68 (279)
259 PRK05286 dihydroorotate dehydr 85.9 29 0.00064 34.7 15.1 103 56-163 128-248 (344)
260 PRK11613 folP dihydropteroate 85.9 34 0.00073 33.4 14.9 144 21-183 36-214 (282)
261 KOG2018 Predicted dinucleotide 85.9 0.96 2.1E-05 44.4 4.1 34 366-399 72-106 (430)
262 cd00739 DHPS DHPS subgroup of 85.9 19 0.00042 34.5 13.2 161 1-183 4-201 (257)
263 PF00289 CPSase_L_chain: Carba 85.9 0.97 2.1E-05 37.7 3.7 33 369-401 3-35 (110)
264 PRK13523 NADPH dehydrogenase N 85.8 7.8 0.00017 38.8 10.8 76 29-107 148-249 (337)
265 cd04741 DHOD_1A_like Dihydroor 85.7 37 0.0008 33.2 16.3 85 10-103 92-191 (294)
266 TIGR03366 HpnZ_proposed putati 85.7 0.92 2E-05 43.6 4.0 36 367-402 120-156 (280)
267 PRK06484 short chain dehydroge 85.7 0.89 1.9E-05 47.7 4.2 36 366-401 267-303 (520)
268 cd02803 OYE_like_FMN_family Ol 85.6 6.3 0.00014 38.8 10.1 87 17-106 131-249 (327)
269 COG0352 ThiE Thiamine monophos 85.6 31 0.00067 32.2 14.0 131 26-187 24-165 (211)
270 cd04738 DHOD_2_like Dihydrooro 85.5 21 0.00045 35.5 13.7 90 9-107 128-238 (327)
271 PRK06512 thiamine-phosphate py 85.5 22 0.00047 33.4 13.0 134 23-187 26-171 (221)
272 PF00290 Trp_syntA: Tryptophan 85.5 30 0.00065 33.4 14.2 85 13-103 14-120 (259)
273 PRK00366 ispG 4-hydroxy-3-meth 85.5 3.5 7.6E-05 41.3 7.9 48 136-185 38-85 (360)
274 PF02882 THF_DHG_CYH_C: Tetrah 85.3 2.8 6E-05 37.4 6.5 37 364-400 32-69 (160)
275 PRK14030 glutamate dehydrogena 85.3 2.9 6.4E-05 43.3 7.6 51 338-397 207-257 (445)
276 PRK09414 glutamate dehydrogena 85.2 2.7 5.9E-05 43.6 7.4 52 337-397 210-261 (445)
277 cd08237 ribitol-5-phosphate_DH 85.1 1.2 2.5E-05 44.2 4.6 37 367-403 163-201 (341)
278 cd04747 OYE_like_5_FMN Old yel 85.0 8.8 0.00019 38.8 10.8 76 29-104 150-254 (361)
279 TIGR02632 RhaD_aldol-ADH rhamn 85.0 1.1 2.4E-05 49.1 4.7 38 364-401 410-448 (676)
280 PRK08410 2-hydroxyacid dehydro 85.0 1.7 3.6E-05 43.0 5.5 37 365-401 142-178 (311)
281 PLN02657 3,8-divinyl protochlo 84.9 1.6 3.4E-05 44.5 5.5 36 366-401 58-94 (390)
282 TIGR01037 pyrD_sub1_fam dihydr 84.8 6.1 0.00013 38.5 9.4 84 13-105 93-189 (300)
283 PRK06487 glycerate dehydrogena 84.8 1.5 3.2E-05 43.5 5.1 36 365-400 145-180 (317)
284 PRK08195 4-hyroxy-2-oxovalerat 84.8 17 0.00038 36.3 12.7 108 70-187 10-135 (337)
285 cd03174 DRE_TIM_metallolyase D 84.8 15 0.00032 34.7 11.9 82 70-164 4-98 (265)
286 cd04734 OYE_like_3_FMN Old yel 84.7 6.6 0.00014 39.3 9.7 75 29-106 147-250 (343)
287 cd07943 DRE_TIM_HOA 4-hydroxy- 84.7 16 0.00034 35.0 12.0 104 69-182 6-127 (263)
288 PLN03139 formate dehydrogenase 84.6 1.8 3.8E-05 44.2 5.6 38 364-401 195-232 (386)
289 TIGR01202 bchC 2-desacetyl-2-h 84.5 1 2.3E-05 43.9 3.9 35 367-401 144-179 (308)
290 COG0821 gcpE 1-hydroxy-2-methy 84.4 4.4 9.6E-05 40.2 7.9 50 134-185 30-79 (361)
291 cd08239 THR_DH_like L-threonin 84.3 1 2.3E-05 44.2 3.8 36 367-402 163-199 (339)
292 PLN02686 cinnamoyl-CoA reducta 84.3 1.5 3.3E-05 44.1 5.0 38 364-401 49-87 (367)
293 PRK05855 short chain dehydroge 84.3 1.1 2.5E-05 47.0 4.3 37 365-401 312-349 (582)
294 cd02801 DUS_like_FMN Dihydrour 84.2 34 0.00075 31.5 14.3 84 13-109 3-91 (231)
295 PRK02615 thiamine-phosphate py 84.2 19 0.00042 36.2 12.7 106 23-159 157-266 (347)
296 PTZ00188 adrenodoxin reductase 84.0 1.7 3.6E-05 45.8 5.2 35 367-401 38-73 (506)
297 PRK06932 glycerate dehydrogena 84.0 1.8 3.8E-05 42.9 5.2 37 365-401 144-180 (314)
298 PRK08195 4-hyroxy-2-oxovalerat 84.0 49 0.0011 33.1 17.7 196 23-230 25-242 (337)
299 PLN02602 lactate dehydrogenase 83.7 1.8 3.8E-05 43.6 5.1 34 369-402 38-73 (350)
300 TIGR01496 DHPS dihydropteroate 83.7 5.8 0.00012 38.1 8.5 103 74-189 13-127 (257)
301 PRK14042 pyruvate carboxylase 83.6 71 0.0015 34.6 20.3 206 23-231 26-251 (596)
302 PRK07201 short chain dehydroge 83.6 1.2 2.6E-05 48.2 4.2 38 365-402 368-406 (657)
303 cd06556 ICL_KPHMT Members of t 83.5 42 0.0009 32.0 15.3 121 55-190 63-201 (240)
304 COG0493 GltD NADPH-dependent g 83.4 1.7 3.6E-05 45.4 4.9 37 365-401 120-156 (457)
305 TIGR01037 pyrD_sub1_fam dihydr 83.4 46 0.001 32.3 17.0 40 63-110 89-130 (300)
306 PRK12999 pyruvate carboxylase; 83.2 82 0.0018 37.0 18.9 208 23-230 555-787 (1146)
307 cd02930 DCR_FMN 2,4-dienoyl-Co 83.2 12 0.00025 37.7 10.8 80 27-106 141-245 (353)
308 PRK13585 1-(5-phosphoribosyl)- 83.2 40 0.00087 31.5 15.0 150 19-186 31-199 (241)
309 PLN02256 arogenate dehydrogena 83.2 2 4.3E-05 42.4 5.2 35 367-401 35-69 (304)
310 COG0269 SgbH 3-hexulose-6-phos 83.0 15 0.00034 34.3 10.6 199 9-255 2-202 (217)
311 PTZ00367 squalene epoxidase; P 83.0 1.5 3.2E-05 47.1 4.5 34 368-401 33-66 (567)
312 PF04551 GcpE: GcpE protein; 82.9 4.6 0.0001 40.5 7.5 49 135-185 26-79 (359)
313 PRK08261 fabG 3-ketoacyl-(acyl 82.9 2 4.2E-05 44.4 5.3 36 365-400 207-243 (450)
314 cd02931 ER_like_FMN Enoate red 82.8 10 0.00023 38.5 10.4 78 29-106 156-273 (382)
315 TIGR03201 dearomat_had 6-hydro 82.7 1.4 3E-05 43.7 4.0 36 367-402 166-201 (349)
316 cd07939 DRE_TIM_NifV Streptomy 82.7 45 0.00099 31.8 14.6 191 22-230 19-235 (259)
317 PLN02898 HMP-P kinase/thiamin- 82.6 25 0.00053 37.1 13.4 134 24-187 308-451 (502)
318 KOG1201 Hydroxysteroid 17-beta 82.5 2.1 4.6E-05 41.8 5.0 38 364-401 34-72 (300)
319 TIGR02822 adh_fam_2 zinc-bindi 82.5 1.7 3.7E-05 42.9 4.5 36 367-402 165-200 (329)
320 PTZ00170 D-ribulose-5-phosphat 82.5 44 0.00094 31.4 14.8 86 10-108 6-98 (228)
321 PLN02740 Alcohol dehydrogenase 82.5 1.6 3.5E-05 44.0 4.4 36 367-402 198-234 (381)
322 PTZ00139 Succinate dehydrogena 82.3 1.6 3.5E-05 47.3 4.5 32 369-400 30-61 (617)
323 PRK10415 tRNA-dihydrouridine s 82.2 54 0.0012 32.5 15.0 92 8-111 8-103 (321)
324 PRK00278 trpC indole-3-glycero 82.1 23 0.00051 34.0 12.0 110 26-159 73-186 (260)
325 PRK08294 phenol 2-monooxygenas 82.1 1.6 3.5E-05 47.4 4.5 34 368-401 32-66 (634)
326 cd07941 DRE_TIM_LeuA3 Desulfob 82.0 51 0.0011 31.8 15.8 200 23-230 20-248 (273)
327 PRK06046 alanine dehydrogenase 81.9 1.4 3E-05 43.8 3.6 35 368-402 129-165 (326)
328 TIGR03217 4OH_2_O_val_ald 4-hy 81.7 35 0.00076 34.1 13.5 149 69-232 8-181 (333)
329 TIGR01373 soxB sarcosine oxida 81.6 2 4.3E-05 43.5 4.7 33 368-400 30-64 (407)
330 cd08245 CAD Cinnamyl alcohol d 81.5 1.9 4E-05 42.0 4.3 36 367-402 162-197 (330)
331 COG0281 SfcA Malic enzyme [Ene 81.4 3.5 7.6E-05 42.2 6.2 111 264-400 114-234 (432)
332 PRK11790 D-3-phosphoglycerate 81.4 2.6 5.7E-05 43.3 5.5 38 364-401 147-184 (409)
333 cd02809 alpha_hydroxyacid_oxid 81.4 16 0.00034 35.8 10.8 80 14-106 119-201 (299)
334 TIGR00190 thiC thiamine biosyn 81.2 11 0.00025 38.3 9.6 226 16-269 70-322 (423)
335 PRK10569 NAD(P)H-dependent FMN 81.1 3.5 7.6E-05 37.8 5.7 111 238-381 1-112 (191)
336 COG1148 HdrA Heterodisulfide r 81.1 2.2 4.8E-05 44.5 4.7 34 368-401 124-157 (622)
337 cd04724 Tryptophan_synthase_al 81.1 51 0.0011 31.2 17.4 82 14-104 5-110 (242)
338 PLN00128 Succinate dehydrogena 80.8 2 4.3E-05 46.8 4.5 32 369-400 51-82 (635)
339 cd05188 MDR Medium chain reduc 80.8 1.9 4.1E-05 40.1 3.9 35 367-401 134-168 (271)
340 COG0476 ThiF Dinucleotide-util 80.7 1.9 4.1E-05 41.1 3.9 33 368-400 30-63 (254)
341 PLN02586 probable cinnamyl alc 80.7 2.8 6.1E-05 41.9 5.4 35 367-401 183-217 (360)
342 PF00208 ELFV_dehydrog: Glutam 80.7 5.7 0.00012 37.9 7.2 49 339-395 11-59 (244)
343 PRK13352 thiamine biosynthesis 80.6 23 0.00049 36.3 11.6 225 16-269 70-325 (431)
344 TIGR02660 nifV_homocitr homoci 80.3 69 0.0015 32.3 16.8 197 15-229 18-237 (365)
345 PRK04148 hypothetical protein; 80.3 2 4.4E-05 37.2 3.5 34 367-401 16-49 (134)
346 PLN02661 Putative thiazole syn 80.0 2.5 5.5E-05 42.6 4.7 33 369-401 93-126 (357)
347 cd04733 OYE_like_2_FMN Old yel 80.0 12 0.00026 37.3 9.6 78 26-106 152-257 (338)
348 PRK15409 bifunctional glyoxyla 80.0 3.1 6.7E-05 41.4 5.3 36 365-400 142-178 (323)
349 COG1052 LdhA Lactate dehydroge 79.9 3.1 6.6E-05 41.5 5.2 38 364-401 142-179 (324)
350 PRK12831 putative oxidoreducta 79.9 2.5 5.5E-05 44.0 4.9 35 366-400 279-313 (464)
351 PF00809 Pterin_bind: Pterin b 79.9 1.5 3.2E-05 40.8 2.8 111 67-189 2-125 (210)
352 cd00762 NAD_bind_malic_enz NAD 79.9 3.2 6.9E-05 39.9 5.1 37 364-400 21-68 (254)
353 TIGR02818 adh_III_F_hyde S-(hy 79.8 2 4.4E-05 43.0 4.0 36 367-402 185-221 (368)
354 PRK11730 fadB multifunctional 79.8 1.8 3.9E-05 47.8 3.9 34 369-402 314-347 (715)
355 cd08210 RLP_RrRLP Ribulose bis 79.7 51 0.0011 33.4 14.0 104 61-172 122-237 (364)
356 PRK13581 D-3-phosphoglycerate 79.7 2.9 6.4E-05 44.4 5.3 36 365-400 137-172 (526)
357 cd01079 NAD_bind_m-THF_DH NAD 79.7 3.8 8.3E-05 37.8 5.3 57 338-398 36-93 (197)
358 PRK07573 sdhA succinate dehydr 79.6 2.3 4.9E-05 46.4 4.6 31 369-399 36-66 (640)
359 TIGR01327 PGDH D-3-phosphoglyc 79.6 3.1 6.7E-05 44.2 5.5 37 364-400 134-170 (525)
360 TIGR01316 gltA glutamate synth 79.5 2.8 6.1E-05 43.4 5.0 35 366-400 270-304 (449)
361 PLN02306 hydroxypyruvate reduc 79.4 3.3 7.3E-05 42.2 5.4 37 365-401 162-199 (386)
362 TIGR03451 mycoS_dep_FDH mycoth 79.4 2.3 5E-05 42.3 4.2 36 367-402 176-212 (358)
363 PRK00779 ornithine carbamoyltr 79.4 33 0.00073 33.8 12.3 132 239-398 45-183 (304)
364 cd08300 alcohol_DH_class_III c 79.3 2.3 5E-05 42.6 4.2 36 367-402 186-222 (368)
365 cd08281 liver_ADH_like1 Zinc-d 79.3 2.1 4.5E-05 42.9 3.9 36 367-402 191-227 (371)
366 PLN02697 lycopene epsilon cycl 79.2 2.4 5.2E-05 45.1 4.5 32 369-400 109-140 (529)
367 PLN02572 UDP-sulfoquinovose sy 79.2 3.2 7E-05 43.0 5.4 35 365-399 44-79 (442)
368 COG0111 SerA Phosphoglycerate 79.1 3.4 7.5E-05 41.1 5.3 36 364-399 138-173 (324)
369 cd00377 ICL_PEPM Members of th 79.0 60 0.0013 30.8 14.4 123 55-188 60-204 (243)
370 PRK09754 phenylpropionate diox 79.0 3.2 7E-05 42.1 5.2 33 368-400 144-176 (396)
371 KOG2015 NEDD8-activating compl 79.0 2.9 6.3E-05 41.3 4.5 33 367-399 39-72 (422)
372 cd08301 alcohol_DH_plants Plan 78.9 2.4 5.2E-05 42.3 4.2 36 367-402 187-223 (369)
373 TIGR00262 trpA tryptophan synt 78.9 63 0.0014 31.0 19.5 163 14-191 15-208 (256)
374 PRK09496 trkA potassium transp 78.8 2.4 5.1E-05 43.7 4.2 37 366-402 229-265 (453)
375 PRK02227 hypothetical protein; 78.7 24 0.00052 33.6 10.4 98 93-192 15-126 (238)
376 COG0159 TrpA Tryptophan syntha 78.7 66 0.0014 31.1 19.6 175 9-200 17-226 (265)
377 PRK08255 salicylyl-CoA 5-hydro 78.6 8.8 0.00019 42.7 8.8 78 26-106 554-659 (765)
378 PRK10309 galactitol-1-phosphat 78.6 2.3 5.1E-05 41.9 4.0 36 367-402 160-196 (347)
379 TIGR02437 FadB fatty oxidation 78.3 2.1 4.6E-05 47.2 3.9 36 367-402 312-347 (714)
380 PF03949 Malic_M: Malic enzyme 78.3 4 8.6E-05 39.2 5.2 37 364-400 21-68 (255)
381 cd07940 DRE_TIM_IPMS 2-isoprop 78.3 65 0.0014 30.9 14.9 193 23-230 20-242 (268)
382 cd03316 MR_like Mandelate race 78.2 69 0.0015 31.8 14.5 152 21-190 139-301 (357)
383 PF10566 Glyco_hydro_97: Glyco 78.2 8.7 0.00019 37.3 7.6 94 81-174 28-140 (273)
384 COG1902 NemA NADH:flavin oxido 78.2 15 0.00032 37.2 9.5 90 17-106 139-259 (363)
385 cd00959 DeoC 2-deoxyribose-5-p 78.1 29 0.00063 31.8 10.9 89 11-105 53-151 (203)
386 PLN02487 zeta-carotene desatur 78.1 3.3 7.2E-05 44.5 5.1 33 369-401 76-108 (569)
387 PF02629 CoA_binding: CoA bind 78.0 3.3 7.1E-05 33.3 4.0 36 368-403 3-40 (96)
388 PRK06407 ornithine cyclodeamin 78.0 2.3 4.9E-05 41.9 3.6 36 368-403 117-154 (301)
389 PLN02712 arogenate dehydrogena 77.9 3.6 7.9E-05 45.0 5.5 37 365-401 366-402 (667)
390 cd08295 double_bond_reductase_ 77.9 2.6 5.6E-05 41.4 4.1 35 367-401 151-186 (338)
391 PF05853 DUF849: Prokaryotic p 77.7 65 0.0014 31.2 13.6 140 21-190 24-176 (272)
392 PLN02464 glycerol-3-phosphate 77.6 2.8 6.2E-05 45.5 4.5 32 369-400 72-103 (627)
393 PRK11199 tyrA bifunctional cho 77.6 3.1 6.8E-05 42.2 4.6 33 368-400 98-131 (374)
394 PRK07565 dihydroorotate dehydr 77.5 18 0.00039 36.0 9.9 44 59-110 96-139 (334)
395 cd08231 MDR_TM0436_like Hypoth 77.5 2.6 5.6E-05 41.8 4.0 35 367-401 177-212 (361)
396 cd04738 DHOD_2_like Dihydrooro 77.3 33 0.00072 34.0 11.8 102 56-162 118-238 (327)
397 COG1063 Tdh Threonine dehydrog 77.2 2.7 5.8E-05 42.2 3.9 36 368-403 169-205 (350)
398 PTZ00058 glutathione reductase 77.1 3 6.6E-05 44.7 4.5 32 369-400 49-80 (561)
399 cd00019 AP2Ec AP endonuclease 77.1 69 0.0015 30.5 14.9 26 20-48 10-35 (279)
400 TIGR00612 ispG_gcpE 1-hydroxy- 77.0 84 0.0018 31.5 14.3 148 20-183 31-195 (346)
401 TIGR03572 WbuZ glycosyl amidat 77.0 64 0.0014 30.0 15.2 150 20-186 30-203 (232)
402 PRK08999 hypothetical protein; 77.0 71 0.0015 31.1 13.9 133 24-187 145-287 (312)
403 COG1086 Predicted nucleoside-d 76.8 3.4 7.3E-05 43.9 4.6 122 243-401 158-285 (588)
404 KOG0399 Glutamate synthase [Am 76.8 3 6.5E-05 47.6 4.4 36 366-401 1783-1818(2142)
405 PRK06199 ornithine cyclodeamin 76.7 2.4 5.2E-05 43.2 3.4 36 368-403 155-193 (379)
406 KOG0069 Glyoxylate/hydroxypyru 76.6 4.1 8.8E-05 40.7 4.9 39 364-402 158-196 (336)
407 COG0036 Rpe Pentose-5-phosphat 76.5 68 0.0015 30.1 14.5 86 9-107 2-93 (220)
408 PLN02172 flavin-containing mon 76.3 3.6 7.7E-05 43.0 4.7 36 365-400 201-236 (461)
409 PRK07251 pyridine nucleotide-d 76.3 4.1 8.8E-05 41.9 5.1 34 368-401 157-190 (438)
410 cd02940 DHPD_FMN Dihydropyrimi 76.2 64 0.0014 31.5 13.3 40 64-110 99-138 (299)
411 PRK02102 ornithine carbamoyltr 76.2 52 0.0011 32.9 12.7 131 240-398 49-187 (331)
412 KOG2853 Possible oxidoreductas 76.1 2.7 5.9E-05 42.1 3.5 34 368-401 86-123 (509)
413 TIGR00126 deoC deoxyribose-pho 76.1 38 0.00083 31.6 11.0 90 10-105 53-152 (211)
414 cd08296 CAD_like Cinnamyl alco 76.1 3.6 7.8E-05 40.3 4.5 36 367-402 163-198 (333)
415 PLN03154 putative allyl alcoho 76.0 2.9 6.2E-05 41.7 3.8 35 367-401 158-193 (348)
416 TIGR00521 coaBC_dfp phosphopan 76.0 9.1 0.0002 39.2 7.4 57 334-400 161-234 (390)
417 PF00743 FMO-like: Flavin-bind 76.0 2.9 6.3E-05 44.5 4.0 38 364-401 179-216 (531)
418 cd08293 PTGR2 Prostaglandin re 75.9 3.1 6.6E-05 40.8 3.9 35 368-402 155-191 (345)
419 cd06557 KPHMT-like Ketopantoat 75.9 53 0.0012 31.5 12.2 146 34-190 30-203 (254)
420 cd08234 threonine_DH_like L-th 75.8 3 6.5E-05 40.6 3.8 35 367-401 159-194 (334)
421 PRK06823 ornithine cyclodeamin 75.6 2.9 6.2E-05 41.5 3.6 36 368-403 128-165 (315)
422 cd07937 DRE_TIM_PC_TC_5S Pyruv 75.6 45 0.00097 32.2 11.9 111 70-182 5-133 (275)
423 TIGR03566 FMN_reduc_MsuE FMN r 75.4 5.8 0.00013 35.4 5.2 110 239-379 1-112 (174)
424 TIGR01372 soxA sarcosine oxida 75.3 3.7 8E-05 47.0 4.9 34 368-401 163-196 (985)
425 PRK13748 putative mercuric red 75.3 3.7 8E-05 43.7 4.6 32 369-400 99-130 (561)
426 PLN02827 Alcohol dehydrogenase 75.3 3.2 6.9E-05 41.9 3.9 35 367-401 193-228 (378)
427 PLN02342 ornithine carbamoyltr 75.2 97 0.0021 31.2 14.7 186 185-398 13-225 (348)
428 TIGR00343 pyridoxal 5'-phospha 75.1 38 0.00083 33.1 10.9 39 53-103 56-94 (287)
429 cd08277 liver_alcohol_DH_like 75.0 3.4 7.4E-05 41.3 4.0 36 367-402 184-220 (365)
430 TIGR02825 B4_12hDH leukotriene 75.0 3.3 7.2E-05 40.4 3.9 35 367-401 138-173 (325)
431 cd08242 MDR_like Medium chain 74.9 3.3 7.1E-05 40.1 3.8 34 367-400 155-188 (319)
432 PRK04165 acetyl-CoA decarbonyl 74.8 65 0.0014 33.6 13.3 158 8-188 89-269 (450)
433 PRK08227 autoinducer 2 aldolas 74.7 66 0.0014 31.1 12.5 122 22-155 93-221 (264)
434 COG0334 GdhA Glutamate dehydro 74.7 7.6 0.00016 39.8 6.3 53 339-400 187-239 (411)
435 cd08255 2-desacetyl-2-hydroxye 74.7 3.4 7.4E-05 39.0 3.8 35 367-401 97-132 (277)
436 PRK00507 deoxyribose-phosphate 74.5 76 0.0017 29.8 15.3 139 20-175 19-175 (221)
437 PF02844 GARS_N: Phosphoribosy 74.5 5 0.00011 32.9 4.1 31 370-400 2-34 (100)
438 TIGR02441 fa_ox_alpha_mit fatt 74.5 3 6.4E-05 46.3 3.7 35 368-402 335-369 (737)
439 cd08260 Zn_ADH6 Alcohol dehydr 74.4 3.9 8.4E-05 40.2 4.2 35 367-401 165-199 (345)
440 cd08289 MDR_yhfp_like Yhfp put 74.3 4.2 9.1E-05 39.3 4.4 35 368-402 147-182 (326)
441 cd08269 Zn_ADH9 Alcohol dehydr 74.2 3.6 7.7E-05 39.5 3.8 35 367-401 129-164 (312)
442 PLN02815 L-aspartate oxidase 74.2 3.8 8.1E-05 44.3 4.3 31 369-400 30-60 (594)
443 PRK11154 fadJ multifunctional 74.2 3.2 6.9E-05 45.8 3.9 35 368-402 309-344 (708)
444 KOG0024 Sorbitol dehydrogenase 74.2 4 8.6E-05 40.5 4.1 35 367-401 169-204 (354)
445 TIGR03140 AhpF alkyl hydropero 74.1 4 8.6E-05 43.2 4.4 31 368-398 212-242 (515)
446 cd00739 DHPS DHPS subgroup of 73.9 28 0.0006 33.5 9.8 102 75-188 15-128 (257)
447 PLN02612 phytoene desaturase 73.9 5.2 0.00011 42.9 5.3 36 365-400 90-125 (567)
448 PRK05976 dihydrolipoamide dehy 73.8 5.1 0.00011 41.7 5.1 34 368-401 180-213 (472)
449 cd08299 alcohol_DH_class_I_II_ 73.8 3.7 8E-05 41.3 3.9 35 367-401 190-225 (373)
450 cd05284 arabinose_DH_like D-ar 73.7 4 8.6E-05 39.9 4.1 35 367-401 167-202 (340)
451 PRK07589 ornithine cyclodeamin 73.7 3.4 7.4E-05 41.5 3.6 36 368-403 129-166 (346)
452 cd08233 butanediol_DH_like (2R 73.6 3.8 8.3E-05 40.4 4.0 35 367-401 172-207 (351)
453 PLN02328 lysine-specific histo 73.5 4.4 9.6E-05 45.2 4.7 34 367-400 237-270 (808)
454 cd08294 leukotriene_B4_DH_like 73.5 4.1 8.8E-05 39.5 4.1 35 367-401 143-178 (329)
455 PLN02507 glutathione reductase 73.4 4.3 9.2E-05 42.8 4.4 31 369-399 26-56 (499)
456 PLN02514 cinnamyl-alcohol dehy 73.4 4.2 9.1E-05 40.5 4.2 35 367-401 180-214 (357)
457 TIGR01740 pyrF orotidine 5'-ph 73.3 77 0.0017 29.3 15.3 95 13-117 1-95 (213)
458 TIGR03693 ocin_ThiF_like putat 73.2 4.2 9E-05 43.7 4.2 31 367-397 128-159 (637)
459 PLN02444 HMP-P synthase 73.2 21 0.00045 37.9 9.1 131 15-153 229-374 (642)
460 TIGR01292 TRX_reduct thioredox 73.1 5.9 0.00013 37.7 5.0 35 367-401 140-174 (300)
461 PRK09284 thiamine biosynthesis 73.0 20 0.00043 38.0 8.9 130 16-153 225-369 (607)
462 PLN02178 cinnamyl-alcohol dehy 72.9 5.2 0.00011 40.4 4.8 34 367-400 178-211 (375)
463 TIGR03385 CoA_CoA_reduc CoA-di 72.8 5.8 0.00013 40.6 5.2 35 367-401 136-170 (427)
464 PRK12770 putative glutamate sy 72.7 5.8 0.00013 39.5 5.0 34 367-400 171-205 (352)
465 TIGR01350 lipoamide_DH dihydro 72.7 5.5 0.00012 41.2 5.0 34 368-401 170-203 (461)
466 PF13434 K_oxygenase: L-lysine 72.7 4 8.8E-05 40.8 3.9 35 367-401 189-225 (341)
467 TIGR02440 FadJ fatty oxidation 72.7 3.8 8.2E-05 45.1 4.0 35 368-402 304-339 (699)
468 PRK13529 malate dehydrogenase; 72.6 8.6 0.00019 41.0 6.4 37 364-400 291-338 (563)
469 PRK04965 NADH:flavorubredoxin 72.3 6.1 0.00013 39.7 5.1 33 368-400 141-173 (377)
470 PRK13656 trans-2-enoyl-CoA red 72.1 5.6 0.00012 40.6 4.7 63 331-399 9-74 (398)
471 PRK00694 4-hydroxy-3-methylbut 72.1 14 0.00031 39.3 7.8 49 135-185 40-93 (606)
472 cd00408 DHDPS-like Dihydrodipi 72.1 94 0.002 29.7 13.8 103 82-188 15-131 (281)
473 cd00423 Pterin_binding Pterin 72.0 93 0.002 29.7 14.9 147 18-183 19-202 (258)
474 PRK12861 malic enzyme; Reviewe 71.9 6.9 0.00015 43.4 5.7 37 364-400 185-224 (764)
475 PRK07535 methyltetrahydrofolat 71.7 65 0.0014 31.0 11.8 120 17-153 19-151 (261)
476 cd02811 IDI-2_FMN Isopentenyl- 71.7 17 0.00037 36.1 8.1 74 19-105 126-209 (326)
477 PRK06370 mercuric reductase; V 71.7 6.3 0.00014 40.8 5.2 34 368-401 171-204 (463)
478 cd00423 Pterin_binding Pterin 71.5 32 0.00069 32.9 9.6 112 70-193 10-133 (258)
479 cd08259 Zn_ADH5 Alcohol dehydr 71.4 4.8 0.0001 38.8 4.1 35 367-401 162-197 (332)
480 PLN02852 ferredoxin-NADP+ redu 71.4 6.1 0.00013 41.7 5.0 34 367-400 165-219 (491)
481 cd00950 DHDPS Dihydrodipicolin 71.4 99 0.0022 29.7 13.8 103 82-188 18-134 (284)
482 PRK10262 thioredoxin reductase 71.4 6.8 0.00015 38.3 5.1 35 367-401 145-179 (321)
483 TIGR00735 hisF imidazoleglycer 71.2 96 0.0021 29.5 14.8 191 20-230 30-247 (254)
484 TIGR02371 ala_DH_arch alanine 71.2 4.2 9.1E-05 40.4 3.6 36 368-403 128-165 (325)
485 cd07943 DRE_TIM_HOA 4-hydroxy- 71.1 98 0.0021 29.5 18.0 145 23-178 22-181 (263)
486 PF00682 HMGL-like: HMGL-like 70.9 44 0.00096 31.1 10.4 79 81-165 10-92 (237)
487 cd04739 DHOD_like Dihydroorota 70.7 30 0.00065 34.4 9.5 39 62-108 97-135 (325)
488 PRK10605 N-ethylmaleimide redu 70.7 30 0.00065 35.0 9.6 78 28-106 164-270 (362)
489 COG1062 AdhC Zn-dependent alco 70.7 6 0.00013 39.6 4.4 37 367-403 185-222 (366)
490 cd00951 KDGDH 5-dehydro-4-deox 70.6 1.1E+02 0.0023 29.8 13.3 62 121-187 67-132 (289)
491 PLN02712 arogenate dehydrogena 70.6 8 0.00017 42.4 5.8 35 367-401 51-85 (667)
492 cd08261 Zn_ADH7 Alcohol dehydr 70.5 5 0.00011 39.3 4.0 35 367-401 159-193 (337)
493 cd05276 p53_inducible_oxidored 70.5 5.1 0.00011 38.0 4.0 35 367-401 139-174 (323)
494 PRK08883 ribulose-phosphate 3- 70.3 95 0.0021 29.0 12.8 80 13-105 2-88 (220)
495 PTZ00317 NADP-dependent malic 70.2 11 0.00023 40.3 6.4 37 364-400 293-340 (559)
496 COG1830 FbaB DhnA-type fructos 70.0 1.1E+02 0.0024 29.6 13.6 126 23-154 97-231 (265)
497 PRK07846 mycothione reductase; 70.0 7.3 0.00016 40.4 5.2 34 368-401 166-199 (451)
498 PRK06292 dihydrolipoamide dehy 70.0 6.7 0.00015 40.5 5.0 34 368-401 169-202 (460)
499 PRK12862 malic enzyme; Reviewe 70.0 9.1 0.0002 42.6 6.1 37 364-400 189-228 (763)
500 PLN02417 dihydrodipicolinate s 70.0 1.1E+02 0.0024 29.6 13.8 63 121-188 68-133 (280)
No 1
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=100.00 E-value=8.3e-99 Score=785.52 Aligned_cols=396 Identities=54% Similarity=0.932 Sum_probs=360.8
Q ss_pred ccCCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCC
Q 015614 4 VNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGD 83 (403)
Q Consensus 4 ~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~ 83 (403)
--|.+++|+||+|+++++.+|++.+++.+...++|+||||+|+|.+.++.+++..+++..++|+|||+|+++|||.++.+
T Consensus 16 ~~~~~~~~~icv~i~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~~~~~~~~plI~T~R~~~eGG~~~~~ 95 (529)
T PLN02520 16 GGVRRNPTLICVPIMADSVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLIKQSPLPTLVTYRPKWEGGQYEGD 95 (529)
T ss_pred cccccCCCEEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEEeccccccCCHHHHHHHHhcCCCcEEEEeccHHHCCCCCCC
Confidence 35778899999999999999999999888778999999999999976655677777777799999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015614 84 EHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV 163 (403)
Q Consensus 84 ~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~ 163 (403)
+++|+++|+.+++.|+||||||+...++..+.+...++.++|+|+|||||++||+.+++.+++++|+++||||+|||+||
T Consensus 96 ~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~~vI~S~H~f~~tP~~~el~~~~~~~~~~gaDi~Kia~~~ 175 (529)
T PLN02520 96 ENKRQDALRLAMELGADYVDVELKVAHEFINSISGKKPEKCKVIVSSHNYENTPSVEELGNLVARIQATGADIVKIATTA 175 (529)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcCCchhHHHHHHhhhhcCCEEEEEecCCCCCCCHHHHHHHHHHHHHhCCCEEEEecCC
Confidence 99999999999999999999999998866655555666899999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCcccccccC--CCCCCCCCCHHHHHhhhhhccccccceEE
Q 015614 164 NDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLK--GTPVLGLPTVESLRQTYKVEHINADTKVF 241 (403)
Q Consensus 164 ~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~--~~sApGQ~~~~~l~~~~~~~~~~~~~~~~ 241 (403)
++.+|++++++++.+.+.|+|+||||+.|++||+++++|||++||++++ .++||||++++++++++++.++..++++|
T Consensus 176 ~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~sRi~~~~~GS~lTy~~~~~~~~sAPGQ~~~~~l~~~~~~~~~~~~t~~~ 255 (529)
T PLN02520 176 LDITDVARMFQITVHSQVPTIGLVMGERGLISRILCPKFGGYLTFGTLEAGKVSAPGQPTIKDLLDLYNFRQIGPDTKVY 255 (529)
T ss_pred CCHHHHHHHHHHHhhcCCCEEEEecCCCCchheecccccCCceeeeecCcccccCCCCCCHHHHHHHhhhhcccCCceEE
Confidence 9999999999988778899999999999999999999999999999987 45999999999999999999999889999
Q ss_pred eeeccCCcccCCHHHHHHHHHhcCCCceEeecCcccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHHhhcccee
Q 015614 242 GLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVN 321 (403)
Q Consensus 242 ~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavN 321 (403)
||+|+||+||+||.|||++|+++|+|+.|.++++++++++++.++..+|.|+|||||||+++++|+|++|+.|+.|||||
T Consensus 256 ~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~~~~~A~~iGAVN 335 (529)
T PLN02520 256 GIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLLVDDLAKFLQTYSSPDFAGFSCTIPHKEDALKCCDEVDPIAKSIGAIN 335 (529)
T ss_pred EEEcCCcccccCHHHHHHHHHHCCCCcEEEEeehhhHHHHHHHHhhCCCCEEEECcCCHHHHHHHhccCCHHHHHhCCce
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred EEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 322 TIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 322 Ti~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
||++++++|+|+||||||.||+.+|++.+...+.. +..+...++|+++|+|+||+|||++++|.++|++|+++||+.
T Consensus 336 Tvv~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~---~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~ 412 (529)
T PLN02520 336 TIIRRPSDGKLVGYNTDYIGAISAIEDGLRASGSS---PASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTY 412 (529)
T ss_pred EEEEeCCCCEEEEEcccHHHHHHHHHhhhcccccc---cccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 99986227999999999999999998643200000 001234678999999999999999999999999999999985
Q ss_pred C
Q 015614 402 G 402 (403)
Q Consensus 402 ~ 402 (403)
+
T Consensus 413 e 413 (529)
T PLN02520 413 E 413 (529)
T ss_pred H
Confidence 4
No 2
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=100.00 E-value=2.1e-88 Score=699.80 Aligned_cols=362 Identities=27% Similarity=0.452 Sum_probs=329.7
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHH
Q 015614 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL 91 (403)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 91 (403)
|||+||++++.+|++.+++.+. .++|+||||+|+|.+.+.. .+..+++..+.|++ |+|+++ ++++++|+++|
T Consensus 1 ~icv~i~~~~~~e~~~~~~~~~-~~~D~vE~R~D~~~~~~~~-~~~~l~~~~~~pil-T~R~~~-----~~~~~~~~~~l 72 (477)
T PRK09310 1 MLCATISGPSFLEAKQQILRSL-KLVDCIELRVDLLLSLSDL-ELKKLIELAPIPIL-TWKKHE-----SCSQAAWIDKM 72 (477)
T ss_pred CEEEEecCCCHHHHHHHHHHhc-ccCCEEEEEehhhccCCHH-HHHHHHhcCCCceE-EeccCc-----cCCHHHHHHHH
Confidence 6999999999999999998875 7799999999999876544 37777765566766 999987 45889999999
Q ss_pred HHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHH
Q 015614 92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIAR 171 (403)
Q Consensus 92 ~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ 171 (403)
+.++++|+||||||++..++.++++... ++++|+|+|||||+ .+++.+++++|+++||||+|||+||++.+|+++
T Consensus 73 ~~~~~~~~d~vDiEl~~~~~~~~~l~~~-~~~~kvI~S~Hdf~----~~~l~~~~~~~~~~gaDi~Kia~~a~~~~D~l~ 147 (477)
T PRK09310 73 QSLAKLNPNYLDIDKDFPKEALIRIRKL-HPKIKIILSYHTSE----HEDIIQLYNEMLASAADYYKIAVSSSSSTDLLN 147 (477)
T ss_pred HHHHHhCCCEEEEEecCCHHHHHHHHHh-CCCCEEEEEcCCCC----cchHHHHHHHHHHcCCCEEEEeeCCCCHHHHHH
Confidence 9999999999999999988887777544 45999999999994 267999999999999999999999999999999
Q ss_pred HHHHhccCCCCEEEEEcCccchhhhhhcCCCCCcccccccCC--CCCCCCCCHHHHHhhhhhccccccceEEeeeccCCc
Q 015614 172 IFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKG--TPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVG 249 (403)
Q Consensus 172 ll~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~--~sApGQ~~~~~l~~~~~~~~~~~~~~~~~liG~pi~ 249 (403)
+++++.....|+|+|+||+.|++||+++++|||++||+++.. ++||||++++++. .|++.+++.++++|||+|+||+
T Consensus 148 ll~~~~~~~~p~i~i~MG~~G~~SRil~~~~gS~~Tfa~~~~~~~~APGQi~~~~l~-~~~~~~~~~~t~~~~liG~pi~ 226 (477)
T PRK09310 148 IIHQKRSLPENTTVLCMGGMGRPSRILSPLLQNAFNYAAGIGAPPVAPGQLSLEHLL-FYNYANLSAQSPIYGLIGDPVD 226 (477)
T ss_pred HHHHHhhCCCCEEEEEeCCCchHHhhcchhhcCccccccccCccccCCCCcCHHHHH-hcchhccCCCceEEEEECCCcc
Confidence 999988888899999999999999999999999999999765 4799999999998 5688888888999999999999
Q ss_pred ccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHHhhccceeEEEEec
Q 015614 250 HSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRP 327 (403)
Q Consensus 250 hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavNTi~~~~ 327 (403)
||+||.|||++|+++|+|+.|.++++ ++++++++.++.++|.|+|||||||+++++|+|++|+.|+.+||||||+++
T Consensus 227 hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~~d~~~~~A~~iGAVNTv~~~- 305 (477)
T PRK09310 227 RSISHLSHNPLFSQLSLNCPYIKLPLTPQELPKFFSTIRDLPFLGLSVTMPLKTAVLDFLDKLDPSVKLCGSCNTLVFR- 305 (477)
T ss_pred cccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHhccCCHHHHHhCcceEEEee-
Confidence 99999999999999999999999988 479999999988999999999999999999999999999999999999987
Q ss_pred cCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 328 SDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 328 ~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
+|+|+||||||.||+.+|++. +...++++++|+|+||+|++++++|.+.|++|+++||+.+
T Consensus 306 -~g~l~G~NTD~~G~~~~l~~~-------------~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~ 366 (477)
T PRK09310 306 -NGKIEGYNTDGEGLFSLLKQK-------------NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKA 366 (477)
T ss_pred -CCEEEEEecCHHHHHHHHHhc-------------CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 999999999999999999753 1345688999999999999999999999999999999854
No 3
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=2.4e-54 Score=412.42 Aligned_cols=229 Identities=24% Similarity=0.393 Sum_probs=206.8
Q ss_pred cCCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCch----HHHHHHhcC-CCcEEEEeecCCCCCC
Q 015614 5 NITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGK----DLEIILTKK-PLPVLIVYRPKWAGGL 79 (403)
Q Consensus 5 ~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~----~l~~l~~~~-~~PiI~T~R~~~eGG~ 79 (403)
.+..++|+||+||.+++.+|++++++++...++|+||||+|+|.+.+..+ .+..+++.. ++|+|||+|+++|||.
T Consensus 10 ~~~~~~~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~ 89 (253)
T PRK02412 10 VIGEGAPKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGE 89 (253)
T ss_pred EeCCCCcEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCC
Confidence 45678999999999999999999998887789999999999998754322 334455543 6899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcC-CcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015614 80 YEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII 157 (403)
Q Consensus 80 ~~~~~~~~~~ll~~~~~~g-~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadiv 157 (403)
++.++++|+++|+.+++.| +||||||++.+.+.++++. ..++.++++|+|||+|++||+.+++.+++++|+++||||+
T Consensus 90 ~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDiv 169 (253)
T PRK02412 90 IALSDEEYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIV 169 (253)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEE
Confidence 9999999999999999999 9999999999887777776 3456899999999999999999999999999999999999
Q ss_pred EEEeecCCHhHHHHHHHHhcc-----CCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhc
Q 015614 158 KLVFSVNDITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE 232 (403)
Q Consensus 158 Kia~~~~~~~D~~~ll~~~~~-----~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~ 232 (403)
|+|+++++.+|++++++++.+ .+.|+|+|+||+.|++||+++++|||++||+++++++||||+++++|+++|+.+
T Consensus 170 Kia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~G~~SRil~~~~GS~~ty~~~~~~sAPGQ~~~~el~~i~~~l 249 (253)
T PRK02412 170 KIAVMPQSEQDVLTLLNATREMKELYADQPLITMSMGKLGRISRLAGEVFGSSWTFASLDKASAPGQISVEDLRRILEIL 249 (253)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCchHHHcchhhhCCcceecCCCCCCCCCCCCHHHHHHHHHHh
Confidence 999999999999999998753 468999999999999999999999999999999999999999999999999865
Q ss_pred c
Q 015614 233 H 233 (403)
Q Consensus 233 ~ 233 (403)
+
T Consensus 250 ~ 250 (253)
T PRK02412 250 H 250 (253)
T ss_pred c
Confidence 4
No 4
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=100.00 E-value=5.5e-53 Score=397.71 Aligned_cols=217 Identities=29% Similarity=0.502 Sum_probs=193.8
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHH----HHHh-cCCCcEEEEeecCCCCCCCCCCHHH
Q 015614 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLE----IILT-KKPLPVLIVYRPKWAGGLYEGDEHK 86 (403)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~----~l~~-~~~~PiI~T~R~~~eGG~~~~~~~~ 86 (403)
+||+|+++++.+|+..+++++ ..|||+||||+|+|.+..+.+.+. .++. ..++|+|||+|+++|||.++.++++
T Consensus 1 ~i~v~~~~~~~~~~~~~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~~~ 79 (228)
T TIGR01093 1 KIFVPLTAPDLEEALATAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNEEE 79 (228)
T ss_pred CEEEEccCCCHHHHHHHHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHH
Confidence 589999999999999999987 789999999999998654322222 2221 1478999999999999999999999
Q ss_pred HHHHHHHH-HHcCCcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC
Q 015614 87 RLEALHLA-EDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN 164 (403)
Q Consensus 87 ~~~ll~~~-~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~ 164 (403)
|+++++.+ .+.++||||||++.+++..++++ ..+++++|||+|||||++||+++++.+++++|+++||||+|+|++++
T Consensus 80 ~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~ 159 (228)
T TIGR01093 80 YLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMAN 159 (228)
T ss_pred HHHHHHHHHHhCCCCEEEEEccCCHHHHHHHHHHHHHCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccC
Confidence 99999998 57779999999999888777776 34678999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHhccC----CCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhh
Q 015614 165 DITEIARIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTY 229 (403)
Q Consensus 165 ~~~D~~~ll~~~~~~----~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~ 229 (403)
+.+|++++++++.+. ++|+|+|+||+.|++||+++++|||++||+++++++||||+++++|+++|
T Consensus 160 ~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ~~~~~l~~~~ 228 (228)
T TIGR01093 160 SKEDVLTLLEITNKVDEHADVPLITMSMGDRGKISRVLGAVFGSVLTFGSLGKASAPGQISVDDLRELL 228 (228)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChhHhhccccccccceeccCCCCCCCCCcCHHHHHhhC
Confidence 999999999997553 57999999999999999999999999999999999999999999999864
No 5
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.4e-53 Score=391.19 Aligned_cols=222 Identities=23% Similarity=0.384 Sum_probs=200.2
Q ss_pred CeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-CCchHHHHHHhc-CCCcEEEEeecCCCCCCCCCCHHHH
Q 015614 10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-QPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKR 87 (403)
Q Consensus 10 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~ 87 (403)
.|+||+|+.+.+.+++..+++.+...++|++|||+|+|... +..+....+++. ...|+|||+|+.+|||.|+.++++|
T Consensus 1 ~~~i~~~v~~~~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~~~e~~~~~~~IfT~R~~~EGG~~~~~~~~~ 80 (231)
T COG0710 1 MPKIIVPVVGLDIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLIFTFRTVKEGGEFPGSEEEY 80 (231)
T ss_pred CCEEEEEeecCCHHHHHHHHHHhhccCCCEEEEeechhcccchHHHHHHHHHHhccCCceEEEEeehhhcCCCCCCHHHH
Confidence 48999999999999999999999999999999999999921 112344455544 3679999999999999999999999
Q ss_pred HHHHHHHHHcC-CcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH
Q 015614 88 LEALHLAEDLG-ADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI 166 (403)
Q Consensus 88 ~~ll~~~~~~g-~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~ 166 (403)
+++++.+++.+ ++|||||+.++.+..++++..+ ...++|+|||||++||+++++.+++.+|.++|+||+|+|+||++.
T Consensus 81 i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~-~~~~vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKiAvm~~~~ 159 (231)
T COG0710 81 IELLKKLAELNGPDYIDIELSSPEDDVKEIIKFA-KKHGVIVSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSK 159 (231)
T ss_pred HHHHHHHHhhcCCCEEEEEccCcchhHHHHHhcc-ccCCEEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEEEecCCCH
Confidence 99999999986 9999999999987777776443 333499999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcc---CCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhc
Q 015614 167 TEIARIFQLLSH---CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE 232 (403)
Q Consensus 167 ~D~~~ll~~~~~---~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~ 232 (403)
+|++++++++.. .+.|+|+||||..|++||+++++|||++||+++.+++||||++++++++++..+
T Consensus 160 ~DvL~ll~~~~~~~~~~~p~i~i~MG~~G~~SRv~~~~~GS~~tya~~~~~sAPGQi~v~~l~~~~~~l 228 (231)
T COG0710 160 EDVLDLLEATREFKEAEKPVITISMGKTGKISRVAGPVFGSPITYASLDKPSAPGQISVDELRKILTLL 228 (231)
T ss_pred HHHHHHHHHHHhccccCCCEEEEecCCCCchhhhhHhhhCCceeEeecCCCCCCCCCCHHHHHHHHHHh
Confidence 999999999876 689999999999999999999999999999999999999999999999998754
No 6
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=100.00 E-value=5.5e-53 Score=396.73 Aligned_cols=217 Identities=34% Similarity=0.560 Sum_probs=186.2
Q ss_pred EEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---chHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHH
Q 015614 14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA 90 (403)
Q Consensus 14 cv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l 90 (403)
||||+++|.+|++++++++...|+|+||||+|+|.+.+. .++++.+|+..++|+|||+|+++|||.++.++++|+++
T Consensus 1 cv~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~l 80 (224)
T PF01487_consen 1 CVPLTGSTLEELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLEL 80 (224)
T ss_dssp EEEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHH
T ss_pred CEeeCCCCHHHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHH
Confidence 999999999999999999866699999999999996322 46788888888999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHH
Q 015614 91 LHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIA 170 (403)
Q Consensus 91 l~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~ 170 (403)
|+.+++.|++|||||++..++........+.+++|||+|||||++||+++++.+++++|.++||||+|+|+++++.+|++
T Consensus 81 l~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~ 160 (224)
T PF01487_consen 81 LERAIRLGPDYIDIELDLFPDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVL 160 (224)
T ss_dssp HHHHHHHTSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHH
T ss_pred HHHHHHcCCCEEEEEcccchhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHH
Confidence 99999999999999999655543333334578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccC----CCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhh
Q 015614 171 RIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK 230 (403)
Q Consensus 171 ~ll~~~~~~----~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~ 230 (403)
++++++.+. +.|+|+|+||+.|++||+++++|||++||++..+++||||+++++|+++|+
T Consensus 161 ~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~~t~~~~~~~sApGQl~~~~l~~~~~ 224 (224)
T PF01487_consen 161 RLLRFTKEFREEPDIPVIAISMGELGRISRILNPIFGSVLTFASAGEASAPGQLTLEELREILH 224 (224)
T ss_dssp HHHHHHHHHHHHTSSEEEEEEETGGGHHHHHCHHHHTBSEEEEBSSS-SSTT-EBHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCcEEEEEcCCCchhHHHHHhhhcCCcccCCCCCCCCCCCCcHHHHHHHhC
Confidence 999997654 589999999999999999999999999999888899999999999999874
No 7
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=100.00 E-value=4.2e-51 Score=384.25 Aligned_cols=215 Identities=36% Similarity=0.562 Sum_probs=194.1
Q ss_pred eEEEecccC-CHHHHHHHHHHHHhcCCCEEEEEecCCCCCC---CchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHH
Q 015614 12 MICAPLMAQ-SVEQVLSNMYQAKAEGADVVEIRLDCINNFQ---PGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR 87 (403)
Q Consensus 12 ~icv~l~~~-~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~---~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~ 87 (403)
+||+||.++ +.+|..++++.. .|+|+||||+|+|.... ..++++.+++..+.|+|||+|+++|||.++.++++|
T Consensus 1 ~i~~~i~~~~~~~e~~~~~~~~--~~aD~vElR~D~~~~~~~~~~~~~~~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~ 78 (225)
T cd00502 1 KICVPLTGPDLLEEALSLLELL--LGADAVELRVDLLEDPSIDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGSEEEY 78 (225)
T ss_pred CEEEEecCCCCHHHHHHHHHHh--cCCCEEEEEEeeccccchHHHHHHHHHHHHhCCCCEEEEEcccccCCCcCCCHHHH
Confidence 589999999 999998877664 28999999999998752 245777888777899999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH
Q 015614 88 LEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI 166 (403)
Q Consensus 88 ~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~ 166 (403)
+++++.++++|++|||||++. + ..++++ ..+++++|||+|||+|++||+.+++.+++++|.++||||+|+|+++++.
T Consensus 79 ~~ll~~~~~~~~d~vDiEl~~-~-~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKla~~~~~~ 156 (225)
T cd00502 79 LELLEEALKLGPDYVDIELDS-A-LLEELINSRKKGNTKIIGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSI 156 (225)
T ss_pred HHHHHHHHHHCCCEEEEEecc-h-HHHHHHHHHHhCCCEEEEEeccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCH
Confidence 999999999999999999988 3 333444 4456899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccC----CCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhh
Q 015614 167 TEIARIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK 230 (403)
Q Consensus 167 ~D~~~ll~~~~~~----~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~ 230 (403)
+|++++++++.+. +.|+|+|+||+.|++||++++.|||++||+++++++||||+++++|+++|+
T Consensus 157 ~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ~~~~~l~~~~~ 224 (225)
T cd00502 157 EDNLRLLKFTRQVKNLYDIPLIAINMGELGKLSRILSPVFGSPLTYASLPEPSAPGQLSVEELKQALS 224 (225)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEcCCCCchhhccccccCCcccccCCCCCCCCCCcCHHHHHHHHh
Confidence 9999999997654 469999999999999999999999999999999999999999999998875
No 8
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=5.2e-50 Score=378.15 Aligned_cols=219 Identities=20% Similarity=0.339 Sum_probs=185.2
Q ss_pred eeEEEecccCC-HHHH-HHHHHHHHhcCCCEEEEEecCCCCCCCchHHH----HHHhc-CCCcEEEEeecCCCCCCCCCC
Q 015614 11 TMICAPLMAQS-VEQV-LSNMYQAKAEGADVVEIRLDCINNFQPGKDLE----IILTK-KPLPVLIVYRPKWAGGLYEGD 83 (403)
Q Consensus 11 ~~icv~l~~~~-~~e~-~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~----~l~~~-~~~PiI~T~R~~~eGG~~~~~ 83 (403)
+.|++++.... +++. .+.++.. ..+||+||||+|+|.+.+. +++. .+++. .++|+|||+|+++|||.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vElRlD~l~~~~~-~~~~~~i~~l~~~~~~~p~I~T~Rt~~EGG~~~~~ 81 (238)
T PRK13575 4 VEVAATIAPQLSIEETLIQKINHR-IDAIDIIELRIDQWENVTV-DQLAEMITKLKVLQDSFKLLVTYRTKLQGGYGQFT 81 (238)
T ss_pred eeEeeeeccccccchhHHHHHHhc-CCCCCEEEEEeccccCCCH-HHHHHHHHHHHhhcCCCCEEEEeCChhhCCCCCCC
Confidence 45667776554 5565 4455543 5789999999999987543 2343 33332 478999999999999999999
Q ss_pred HHHHHHHHHHHHHcC-CcEEEEeccc--cchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614 84 EHKRLEALHLAEDLG-ADYVDFELKV--ASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (403)
Q Consensus 84 ~~~~~~ll~~~~~~g-~~yvDiEl~~--~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi 159 (403)
+++|+++++.++..+ +||||||+.. ..+..+++. ..++.++++|+|||||++||+.+++.+++++|+++||||+|+
T Consensus 82 ~~~~~~ll~~~~~~~~~d~vDiE~~~~~~~~~~~~l~~~~~~~~~~vI~S~H~F~~TP~~~~l~~~~~~m~~~gaDi~Ki 161 (238)
T PRK13575 82 NDLYLNLLSDLANINGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVVISHHNFESTPPLDELKFIFFKMQKFNPEYVKL 161 (238)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcccCCChHHHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 999999998888776 8999999986 334445554 345678999999999999999999999999999999999999
Q ss_pred EeecCCHhHHHHHHHHhcc----CCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhh
Q 015614 160 VFSVNDITEIARIFQLLSH----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV 231 (403)
Q Consensus 160 a~~~~~~~D~~~ll~~~~~----~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~ 231 (403)
|+||++.+|+++|++++.+ .+.|+|+|+||+.|++||+++++|||++||+++++++||||+++++|++++++
T Consensus 162 Av~~~~~~Dvl~Ll~~~~~~~~~~~~p~i~i~MG~~G~iSRi~~~~~GS~~Tya~l~~~sAPGQi~v~~l~~i~~~ 237 (238)
T PRK13575 162 AVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALSYGCIGEPQAPGQIHVTDLKAQVTL 237 (238)
T ss_pred EecCCCHHHHHHHHHHHHHHHhccCCCEEEEeCCCCCchhhcchhhhCCceEecCCCCCCCCCCCCHHHHHHHHHh
Confidence 9999999999999999754 36799999999999999999999999999999999999999999999998863
No 9
>PRK13576 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=7.8e-49 Score=363.77 Aligned_cols=204 Identities=18% Similarity=0.165 Sum_probs=174.9
Q ss_pred CCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHH
Q 015614 9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRL 88 (403)
Q Consensus 9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~ 88 (403)
|+|+||+|+++++.+++..+.+. .+||+||||+|+|.+.... +..+.+....|+|||+|+++|||.++.++++|+
T Consensus 1 ~~p~i~vpi~~~~~e~i~~~~~~---~~aD~vE~RlD~l~~~~~~--~~~~l~~~~~plI~T~R~~~EGG~~~~~~~~r~ 75 (216)
T PRK13576 1 MRPLIVASLPIKKIEDLKLIGNF---LDADLIELRLDYLKDREVS--VIEFLDKYKDKLIVTLRDKAEGGINELDDELKI 75 (216)
T ss_pred CCCEEEEEeCCCCHHHHHHHHhc---CCCCEEEEEeccccccchh--HHHHHHhcCCCEEEEeCChHHCCCCcCCHHHHH
Confidence 68999999999999999887543 5899999999999875432 233333445799999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH-h
Q 015614 89 EALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI-T 167 (403)
Q Consensus 89 ~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~-~ 167 (403)
++|+.+++.+. ++|||+....+.. ..+.++|+|||||++||+.+++.+++.+|.+ ||||+|+|+||++. .
T Consensus 76 ~ll~~~~~~~~-~vDiE~~~a~~~~-------~~~~~vI~S~HdF~~TP~~~eL~~~l~~m~~-gaDI~KiA~mp~~~~~ 146 (216)
T PRK13576 76 SLLKELYDKQF-LYDVEASFLQKYN-------VPYDNKIVSIHYFDYLPTSEEVKEIVSKFYE-KAFSVKIAVLGLKGYK 146 (216)
T ss_pred HHHHHHHHhCC-eEEEEcchhhhcC-------CCCCeEEEEECCCCCCcCHHHHHHHHHHHHh-cCCEEEEEeCCCCchH
Confidence 99999999985 7799997543311 1346799999999999999999999999987 99999999999985 6
Q ss_pred HHH-HHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhc
Q 015614 168 EIA-RIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE 232 (403)
Q Consensus 168 D~~-~ll~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~ 232 (403)
|++ +|++ . ..+++|+||+.| +||+++++|||++||+++++++||||+++++|+++++.+
T Consensus 147 d~l~~Ll~---~--~~~i~~~MG~~G-iSRi~~~~fGS~lTy~~~~~~sAPGQi~v~~l~~i~~~l 206 (216)
T PRK13576 147 EVLLPLLE---Y--ENVTVMPMSVNP-LERIAFSLLGSKLIYSYAIEPTAQGQLHYKKVKQILNYL 206 (216)
T ss_pred hHHHHHhc---c--cCccEEEcCCcc-HHHHHHHHhCCeeEEEecCCCCCCCCccHHHHHHHHHHH
Confidence 665 6664 2 245889999999 999999999999999999999999999999999999865
No 10
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-47 Score=369.40 Aligned_cols=158 Identities=37% Similarity=0.626 Sum_probs=145.3
Q ss_pred ccccceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCcc--cHHHHHHHhcCCCCceEEecccchHHHHcccccCC
Q 015614 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH 311 (403)
Q Consensus 234 ~~~~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~~--~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~ 311 (403)
++..+++|||||+||+||+||.|||++|+++|+++.|.+++++ +++++++.++.+++.|+|||||||+++++|+|++|
T Consensus 2 ~~~~t~~~~viG~Pi~HS~SP~~Hn~~~~~lGl~~~Y~a~~v~~~~l~~~v~~~~~~g~~G~NVTiP~Ke~~~~~lD~l~ 81 (283)
T COG0169 2 MNGKTKLFGVIGNPISHSLSPRMHNAAFRALGLDYVYLAFEVPPEDLPEAVSGIRALGFRGLNVTIPFKEAALPLLDELS 81 (283)
T ss_pred CCCCceEEEEEcCCcccCcCHHHHHHHHHHcCCCceEEEeecCHHHHHHHHHHHHhcCCCeeEECCccHHHHHHHHhcCC
Confidence 3456789999999999999999999999999999999999985 99999999999999999999999999999999999
Q ss_pred HHHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCC
Q 015614 312 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG 391 (403)
Q Consensus 312 ~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g 391 (403)
+.|+.|||||||+++. ||+|+||||||.||.++|++... .....+++++|+|||||||||+++|+++|
T Consensus 82 ~~A~~iGAVNTl~~~~-~g~l~G~NTD~~G~~~~L~~~~~-----------~~~~~~~~vlilGAGGAarAv~~aL~~~g 149 (283)
T COG0169 82 PRARLIGAVNTLVRED-DGKLRGYNTDGIGFLRALKEFGL-----------PVDVTGKRVLILGAGGAARAVAFALAEAG 149 (283)
T ss_pred HHHHHhCCceEEEEcc-CCEEEEEcCCHHHHHHHHHhcCC-----------CcccCCCEEEEECCcHHHHHHHHHHHHcC
Confidence 9999999999999982 59999999999999999987421 13456899999999999999999999999
Q ss_pred C-eEEEEecCCCC
Q 015614 392 A-RVVIFDIDFGT 403 (403)
Q Consensus 392 ~-~i~v~nR~~~k 403 (403)
+ +|+|+|||.+|
T Consensus 150 ~~~i~V~NRt~~r 162 (283)
T COG0169 150 AKRITVVNRTRER 162 (283)
T ss_pred CCEEEEEeCCHHH
Confidence 8 89999999764
No 11
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=100.00 E-value=5.7e-47 Score=366.72 Aligned_cols=153 Identities=28% Similarity=0.451 Sum_probs=140.9
Q ss_pred cceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc-------ccHHHHHHHhcCCCCceEEecccchHHHHccccc
Q 015614 237 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV-------DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE 309 (403)
Q Consensus 237 ~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~-------~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~ 309 (403)
++++|||||+||+||+||.|||++|+++|+|+.|.++++ ++++++++.++..+|.|+|||||||+++++++|+
T Consensus 3 ~~~~~gliG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~lD~ 82 (283)
T PRK14027 3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDE 82 (283)
T ss_pred CceEEEEECCCccccCCHHHHHHHHHHcCCCeEEEEEecccccCCHHHHHHHHHHHHhcCCCEEEECccCHHHHHHHhhh
Confidence 478999999999999999999999999999999999985 4789999999888999999999999999999999
Q ss_pred CCHHHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHH
Q 015614 310 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS 389 (403)
Q Consensus 310 ~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~ 389 (403)
+|+.|+.+||||||+++ ++|+|+||||||.||+.+|++.. ...++++++|+|||||||||+|+|.+
T Consensus 83 l~~~A~~iGAVNTv~~~-~~g~l~G~NTD~~Gf~~~L~~~~-------------~~~~~k~vlilGaGGaarAi~~aL~~ 148 (283)
T PRK14027 83 VSEQATQLGAVNTVVID-ATGHTTGHNTDVSGFGRGMEEGL-------------PNAKLDSVVQVGAGGVGNAVAYALVT 148 (283)
T ss_pred CCHHHHHhCCceEEEEC-CCCcEEEEcCCHHHHHHHHHhcC-------------cCcCCCeEEEECCcHHHHHHHHHHHH
Confidence 99999999999999985 28999999999999999997531 23457899999999999999999999
Q ss_pred CCC-eEEEEecCCCC
Q 015614 390 RGA-RVVIFDIDFGT 403 (403)
Q Consensus 390 ~g~-~i~v~nR~~~k 403 (403)
+|+ +|+|+|||.+|
T Consensus 149 ~g~~~i~i~nR~~~k 163 (283)
T PRK14027 149 HGVQKLQVADLDTSR 163 (283)
T ss_pred CCCCEEEEEcCCHHH
Confidence 999 89999998654
No 12
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=100.00 E-value=3.7e-46 Score=362.10 Aligned_cols=153 Identities=30% Similarity=0.510 Sum_probs=141.8
Q ss_pred cccceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCH
Q 015614 235 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP 312 (403)
Q Consensus 235 ~~~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~ 312 (403)
+..+++|||||+||+||+||.|||++|+++|+|+.|.++++ ++++++++.++..+|.|+|||||||+++++|+|++|+
T Consensus 4 ~~~t~~~gliG~Pi~hSlSP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~~~~~~D~l~~ 83 (288)
T PRK12749 4 TAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTP 83 (288)
T ss_pred CCCceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCCH
Confidence 34578999999999999999999999999999999999998 4799999999888999999999999999999999999
Q ss_pred HHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC
Q 015614 313 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA 392 (403)
Q Consensus 313 ~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~ 392 (403)
.|+.|||||||+++ +|+|+||||||.||+.+|++. +...++++++|+||||+||||+++|..+|+
T Consensus 84 ~A~~iGAVNTv~~~--~g~l~G~NTD~~Gf~~~l~~~-------------~~~~~~k~vlvlGaGGaarAi~~~l~~~g~ 148 (288)
T PRK12749 84 AAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-------------GFDIKGKTMVLLGAGGASTAIGAQGAIEGL 148 (288)
T ss_pred HHHHhCceeEEEcc--CCEEEEEecCHHHHHHHHHhc-------------CCCcCCCEEEEECCcHHHHHHHHHHHHCCC
Confidence 99999999999876 899999999999999999753 134578999999999999999999999999
Q ss_pred -eEEEEecCCC
Q 015614 393 -RVVIFDIDFG 402 (403)
Q Consensus 393 -~i~v~nR~~~ 402 (403)
+|+|+||+.+
T Consensus 149 ~~i~i~nRt~~ 159 (288)
T PRK12749 149 KEIKLFNRRDE 159 (288)
T ss_pred CEEEEEeCCcc
Confidence 9999999953
No 13
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=100.00 E-value=1.4e-45 Score=357.91 Aligned_cols=153 Identities=31% Similarity=0.438 Sum_probs=141.2
Q ss_pred ccceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc-------ccHHHHHHHhcCCCCceEEecccchHHHHcccc
Q 015614 236 ADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV-------DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCD 308 (403)
Q Consensus 236 ~~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~-------~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d 308 (403)
..+++|||||+||+||+||.|||++|+++|+|+.|.++++ ++++++++.++..+|.|+|||||||+++++|+|
T Consensus 3 ~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~~D 82 (284)
T PRK12549 3 RPSFLAGLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAERMGFAGLNITHPCKQAVIPHLD 82 (284)
T ss_pred ccceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhc
Confidence 4578999999999999999999999999999999999985 368899999988899999999999999999999
Q ss_pred cCCHHHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHH
Q 015614 309 EVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAK 388 (403)
Q Consensus 309 ~~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~ 388 (403)
++|+.|+.+||||||+++ +|+|+||||||.||+.+|++.. ...++++++|+|+||+|||++++|.
T Consensus 83 ~~~~~A~~iGAvNTv~~~--~g~l~G~NTD~~G~~~~l~~~~-------------~~~~~k~vlIlGaGGaaraia~aL~ 147 (284)
T PRK12549 83 ELSDDARALGAVNTVVFR--DGRRIGHNTDWSGFAESFRRGL-------------PDASLERVVQLGAGGAGAAVAHALL 147 (284)
T ss_pred cCCHHHHHhCCceEEEec--CCEEEEEcCCHHHHHHHHHhhc-------------cCccCCEEEEECCcHHHHHHHHHHH
Confidence 999999999999999886 8999999999999999997532 2346789999999999999999999
Q ss_pred HCCC-eEEEEecCCCC
Q 015614 389 SRGA-RVVIFDIDFGT 403 (403)
Q Consensus 389 ~~g~-~i~v~nR~~~k 403 (403)
++|+ +|+|+||+.+|
T Consensus 148 ~~G~~~I~I~nR~~~k 163 (284)
T PRK12549 148 TLGVERLTIFDVDPAR 163 (284)
T ss_pred HcCCCEEEEECCCHHH
Confidence 9999 89999998653
No 14
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=100.00 E-value=1.8e-44 Score=337.77 Aligned_cols=206 Identities=15% Similarity=0.238 Sum_probs=173.6
Q ss_pred ccCCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHH---HHhcCCCcEEEEeecCCCCCCC
Q 015614 4 VNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEI---ILTKKPLPVLIVYRPKWAGGLY 80 (403)
Q Consensus 4 ~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~---l~~~~~~PiI~T~R~~~eGG~~ 80 (403)
..+-.++|+||+||++++.+|++.+++.+...+||+||||+|+|.+.+.. .+.. ..+..++|+|||+|+.
T Consensus 14 ~~~g~~~p~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~RlD~l~~~~~~-~~~~~~~~l~~~~~p~I~T~R~~------ 86 (229)
T PRK01261 14 FVIGNMQPIVVESIFFKDIKEMKERFKTKVLSDKNLYEIRFDLFHDHSIE-SEPEIISALNEMDIDYIFTYRGV------ 86 (229)
T ss_pred eEeCCCCcEEEEEeCCCCHHHHHHHHHHhhcCCCCEEEEEeeccCCCChH-HHHHHHHHHhhcCCCEEEEEcCC------
Confidence 34567899999999999999999999888778999999999999875432 2232 2233489999999943
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614 81 EGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV 160 (403)
Q Consensus 81 ~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia 160 (403)
++ .++++.+++.++||||||+....++ ..+..++|+|+||| ||+.+++.+++++|.++||||+|+|
T Consensus 87 --~~---~~~l~~a~~~~~d~vDIEl~~~~~~-----~~~~~~~kvIvS~H----tp~~eeL~~~l~~m~~~gaDI~KiA 152 (229)
T PRK01261 87 --DA---RKYYETAIDKMPPAVDLDINLIGKL-----EFRPRNTMLMVSYH----TNNSDNMPAILDIMNEKNPDYVKVA 152 (229)
T ss_pred --CH---HHHHHHHHhhCCCEEEEEcccchhh-----hhhcCCCeEEEEeC----CCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 22 4788888887799999999873332 23457999999999 6788999999999999999999999
Q ss_pred eecCCHhHHHHHHH----HhccCCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhc
Q 015614 161 FSVNDITEIARIFQ----LLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE 232 (403)
Q Consensus 161 ~~~~~~~D~~~ll~----~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~ 232 (403)
+||++.+|+++++. +..+.+.|+|+|+||+ ++||+++++|||++||+++.+++||||+++++|+++|+..
T Consensus 153 vmp~~~~Dvl~~l~~~~~~~~~~~~p~i~isMG~--~iSRi~~~~fGS~lTyas~~~~sAPGQi~v~~l~~~~~~~ 226 (229)
T PRK01261 153 CNYNDNKKFVDDLQYILMKKDEKYKPIVFIPMGR--EFLRIFSGYYVSDIVYARYDNETAPGQPKRDYYESAFIKY 226 (229)
T ss_pred eCCCChHHHHHHHHHHHHHHhcCCCCEEEEECCc--HHHHHHHHHHCCceEEeeCCCCCCCCCCCHHHHHHHHHHh
Confidence 99999999876663 3344578999999999 9999999999999999999999999999999999999754
No 15
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=100.00 E-value=3.6e-45 Score=354.85 Aligned_cols=153 Identities=32% Similarity=0.484 Sum_probs=137.6
Q ss_pred ceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc---ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHH
Q 015614 238 TKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV---DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLA 314 (403)
Q Consensus 238 ~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~---~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A 314 (403)
+++|||||+||+||+||.|||++|+++|+|+.|.++++ +++.++++.++ .+|.|+|||||||+++++++|++|+.|
T Consensus 5 ~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~~~~l~~~~~~~~-~~~~G~nVT~P~K~~~~~~~d~~~~~A 83 (282)
T TIGR01809 5 PKKAFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFETCSAEELKEVLSGFG-PQFGGASVTIPLKFAILRFADEHTDRA 83 (282)
T ss_pred CeEEEEEcCCchhccCHHHHHHHHHHcCCCcEEEeeecCCHHHHHHHHHhcC-CCCcEEEECCCCHHHHHHHhhcCCHHH
Confidence 67999999999999999999999999999999999986 36788888774 499999999999999999999999999
Q ss_pred hhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC-e
Q 015614 315 QAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-R 393 (403)
Q Consensus 315 ~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~-~ 393 (403)
+++||||||++++ ||+|+||||||.||+.+|++... ....++++++||||||+|||++++|.++|+ +
T Consensus 84 ~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~l~~~~~-----------~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~ 151 (282)
T TIGR01809 84 SLIGSVNTLLRTQ-NGIWKGDNTDWDGIAGALANIGK-----------FEPLAGFRGLVIGAGGTSRAAVYALASLGVTD 151 (282)
T ss_pred HHhCceeEEEEcC-CCcEEEecCCHHHHHHHHHhhCC-----------ccccCCceEEEEcCcHHHHHHHHHHHHcCCCe
Confidence 9999999999852 89999999999999999975310 013568899999999999999999999999 8
Q ss_pred EEEEecCCCC
Q 015614 394 VVIFDIDFGT 403 (403)
Q Consensus 394 i~v~nR~~~k 403 (403)
|+|+|||.+|
T Consensus 152 i~I~nRt~~k 161 (282)
T TIGR01809 152 ITVINRNPDK 161 (282)
T ss_pred EEEEeCCHHH
Confidence 9999999654
No 16
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-44 Score=352.58 Aligned_cols=153 Identities=32% Similarity=0.522 Sum_probs=141.9
Q ss_pred ccccceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCC
Q 015614 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH 311 (403)
Q Consensus 234 ~~~~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~ 311 (403)
++..+++|||||+||+||+||.|||++|+++|+|+.|.++++ ++++++++.++..+|.|+|||||||+++++|+|++|
T Consensus 5 ~~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~ld~~~ 84 (289)
T PRK12548 5 ISGTTGLLGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMRGANVTMPCKSEAAKYMDELS 84 (289)
T ss_pred cCCceeEEEEEcCCcccccCHHHHHHHHHHcCCCEEEEEEecCHHHHHHHHHHHHHCCCCEEEECccCHHHHHHHhhcCC
Confidence 455678899999999999999999999999999999999998 479999999988899999999999999999999999
Q ss_pred HHHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCC
Q 015614 312 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG 391 (403)
Q Consensus 312 ~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g 391 (403)
+.|+.+||||||+++ ||+|+||||||.||+.+|++.. ...++|+++|+||||+|||++++|.++|
T Consensus 85 ~~A~~iGavNTi~~~--~g~l~G~NTD~~G~~~~l~~~~-------------~~~~~k~vlI~GAGGagrAia~~La~~G 149 (289)
T PRK12548 85 PAARIIGAVNTIVND--DGKLTGHITDGLGFVRNLREHG-------------VDVKGKKLTVIGAGGAATAIQVQCALDG 149 (289)
T ss_pred HHHHHhCceeEEEeE--CCEEEEEecCHHHHHHHHHhcC-------------CCcCCCEEEEECCcHHHHHHHHHHHHCC
Confidence 999999999999887 8999999999999999997531 2356899999999999999999999999
Q ss_pred C-eEEEEecCC
Q 015614 392 A-RVVIFDIDF 401 (403)
Q Consensus 392 ~-~i~v~nR~~ 401 (403)
+ +|+|+||+.
T Consensus 150 ~~~V~I~~R~~ 160 (289)
T PRK12548 150 AKEITIFNIKD 160 (289)
T ss_pred CCEEEEEeCCc
Confidence 9 699999985
No 17
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=100.00 E-value=3.3e-44 Score=347.69 Aligned_cols=154 Identities=32% Similarity=0.609 Sum_probs=142.6
Q ss_pred cccceEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCH
Q 015614 235 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP 312 (403)
Q Consensus 235 ~~~~~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~ 312 (403)
+..+++|||||+||+||+||.|||++|+++|+|+.|.++++ ++++++++.++..+|.|+|||||||+++++++|++|+
T Consensus 2 ~~~~~~~~viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~ 81 (278)
T PRK00258 2 TGKTRLYAVIGNPIAHSKSPLIHNAAFKQLGLDGVYLAILVPPEDLEDAVKGFFALGGRGANVTVPFKEAAFALADELSE 81 (278)
T ss_pred CCceeEEEEECCchhcccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHhhcCCH
Confidence 34578999999999999999999999999999999999998 6899999999888999999999999999999999999
Q ss_pred HHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC
Q 015614 313 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA 392 (403)
Q Consensus 313 ~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~ 392 (403)
.|+.+||||||+++ +|+|+||||||.||+.+|++.+. ..+++++++|+|+||+||+++++|..+|+
T Consensus 82 ~A~~igavNtv~~~--~g~l~G~NTD~~G~~~~l~~~~~------------~~~~~k~vlVlGaGg~a~ai~~aL~~~g~ 147 (278)
T PRK00258 82 RARLIGAVNTLVLE--DGRLIGDNTDGIGFVRALEERLG------------VDLKGKRILILGAGGAARAVILPLLDLGV 147 (278)
T ss_pred HHHHhCCceEEEee--CCEEEEEcccHHHHHHHHHhccC------------CCCCCCEEEEEcCcHHHHHHHHHHHHcCC
Confidence 99999999999976 89999999999999999975321 34678999999999999999999999996
Q ss_pred -eEEEEecCCC
Q 015614 393 -RVVIFDIDFG 402 (403)
Q Consensus 393 -~i~v~nR~~~ 402 (403)
+|+|+||+.+
T Consensus 148 ~~V~v~~R~~~ 158 (278)
T PRK00258 148 AEITIVNRTVE 158 (278)
T ss_pred CEEEEEeCCHH
Confidence 9999999865
No 18
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=100.00 E-value=5.1e-44 Score=344.08 Aligned_cols=152 Identities=32% Similarity=0.476 Sum_probs=138.9
Q ss_pred ccccce-EEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCcccHHHHHHHhcCCCCceEEecccchHHHHcccccCCH
Q 015614 234 INADTK-VFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP 312 (403)
Q Consensus 234 ~~~~~~-~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~ 312 (403)
++++++ +|||||+| ||+||.|||++|+++|+|+.|.+++.++++++++.++..+|.|+|||||||+++++|+|++|+
T Consensus 5 ~~~~~~~~~gliG~P--~~~Sp~ihn~~f~~~gl~~~Y~~~~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~lD~l~~ 82 (272)
T PRK12550 5 INKDTQLCISLAARP--SNFGTRFHNYLYEALGLNFLYKAFTTTDLTAAIGGVRALGIRGCAVSMPFKEAVIPLVDELDP 82 (272)
T ss_pred CCCCceEEEEEEccc--hhcCHHHHHHHHHHcCCCcEEEecCHhHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhcCCH
Confidence 455677 59999999 778999999999999999999999988999999999888999999999999999999999999
Q ss_pred HHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC
Q 015614 313 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA 392 (403)
Q Consensus 313 ~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~ 392 (403)
.|+.+||||||+++ ||+|+||||||.||+.+|++. + .. .+++++|+||||+|||++|+|.++|+
T Consensus 83 ~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~----~---------~~-~~~~vlilGaGGaarAi~~aL~~~g~ 146 (272)
T PRK12550 83 SAQAIESVNTIVNT--DGHLKAYNTDYIAIAKLLASY----Q---------VP-PDLVVALRGSGGMAKAVAAALRDAGF 146 (272)
T ss_pred HHHHhCCeeEEEee--CCEEEEEecCHHHHHHHHHhc----C---------CC-CCCeEEEECCcHHHHHHHHHHHHCCC
Confidence 99999999999887 899999999999999999753 1 22 25689999999999999999999999
Q ss_pred -eEEEEecCCCC
Q 015614 393 -RVVIFDIDFGT 403 (403)
Q Consensus 393 -~i~v~nR~~~k 403 (403)
+|+|+||+.+|
T Consensus 147 ~~i~i~nR~~~~ 158 (272)
T PRK12550 147 TDGTIVARNEKT 158 (272)
T ss_pred CEEEEEeCCHHH
Confidence 89999999754
No 19
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=100.00 E-value=2e-42 Score=333.82 Aligned_cols=149 Identities=35% Similarity=0.613 Sum_probs=138.3
Q ss_pred eEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHHhh
Q 015614 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA 316 (403)
Q Consensus 239 ~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~--~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~ 316 (403)
++|||+|+||+||+||.|||++|+++|+|+.|.++++ ++++++++.++..+|.|+|||||||+++++++|++|+.|++
T Consensus 1 ~~~~viG~pi~hS~SP~~hn~~~~~~g~~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~ 80 (270)
T TIGR00507 1 KLYGVIGNPIAHSKSPLIHNAFFKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVTSPFKEEAFQFLDEIDERAKL 80 (270)
T ss_pred CEEEEECCccccccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhhCCHHHHH
Confidence 4799999999999999999999999999999999998 47999999998889999999999999999999999999999
Q ss_pred ccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEE
Q 015614 317 IAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI 396 (403)
Q Consensus 317 igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v 396 (403)
+||||||+++ +|+|+||||||.||+.+|++. . ...++++++|+|+||+|++++++|.+.|++|++
T Consensus 81 ~gavNti~~~--~g~l~g~NTD~~G~~~~l~~~-~------------~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v 145 (270)
T TIGR00507 81 AGAVNTLKLE--DGKLVGYNTDGIGLVSDLERL-I------------PLRPNQRVLIIGAGGAARAVALPLLKADCNVII 145 (270)
T ss_pred hCCceEEEee--CCEEEEEcCCHHHHHHHHHhc-C------------CCccCCEEEEEcCcHHHHHHHHHHHHCCCEEEE
Confidence 9999999976 899999999999999998752 1 234578999999999999999999999999999
Q ss_pred EecCCC
Q 015614 397 FDIDFG 402 (403)
Q Consensus 397 ~nR~~~ 402 (403)
+||+.+
T Consensus 146 ~~R~~~ 151 (270)
T TIGR00507 146 ANRTVS 151 (270)
T ss_pred EeCCHH
Confidence 999864
No 20
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=99.96 E-value=5e-31 Score=260.94 Aligned_cols=357 Identities=12% Similarity=-0.008 Sum_probs=288.2
Q ss_pred hcCCCEEEEEecCCCCCC-CchHHHHHHhcCCCcEEEEeecCCCCCC---CCCCHHHHHHHHHHHHHcCCcEEEEecccc
Q 015614 34 AEGADVVEIRLDCINNFQ-PGKDLEIILTKKPLPVLIVYRPKWAGGL---YEGDEHKRLEALHLAEDLGADYVDFELKVA 109 (403)
Q Consensus 34 ~~~~D~vElRlD~l~~~~-~~~~l~~l~~~~~~PiI~T~R~~~eGG~---~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~ 109 (403)
+.+++++|.|.|....++ +............+|.+++.|.+||+|. +.+...++-.-+...++++.+|.|.+++..
T Consensus 118 snralllaa~~eg~~~~~n~L~sddt~~m~sal~~L~~~~~~we~~~~~vveG~gg~~~~~~~~~~eLylgnagta~r~l 197 (595)
T KOG0692|consen 118 SNRALLLAALSEGTTVVDNLLNSDDTNYMLSALKTLGLNVETWEENNRAVVEGCGGEFSIDSKSDIELYLGNAGTAMRPL 197 (595)
T ss_pred hhhHHHHHHHhccceeccccccccchhhhhhhHHHhccccceecCCCEEEEEcCCCeeeechhhhhhhccCccchhhhhH
Confidence 455666666666554443 1111111222357899999999999998 666665554456677788899999999887
Q ss_pred chHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcC
Q 015614 110 SNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVG 189 (403)
Q Consensus 110 ~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG 189 (403)
.++...+-....+..++|.+.|+.+++| +..++...++.||||.|++.+...+.|+. ....+....+|+++.-||
T Consensus 198 t~~aa~v~~k~~~k~~Vl~g~hrmq~rP----i~~LV~~l~q~GadI~~~~~t~~~p~dv~-~~~~~~gg~v~l~g~Vss 272 (595)
T KOG0692|consen 198 TEFAAAVTAKGGNKSYVLDGVHRMQERP----IGDLVVGLKQLGADIECTLGTNCPPVDVN-ANGGLPGGKVKLSGSVSS 272 (595)
T ss_pred HHHHHHhhcCCCCceEEEecCcccccCC----chHHHHHHHhcCCceEEeccCCCCceeee-ccCCCcCceeeeeeeehh
Confidence 7666544344445558999999999999 67778889999999999999999999997 555567778999999999
Q ss_pred ccchhhhhhcCCCCCcccccccCC-C-CCCCCCCHHHHHhhh--hhccccccceEEeeeccCCcccCCHHHHHHHHHhcC
Q 015614 190 ERGLVSQLLSPKFNGALVYGSLKG-T-PVLGLPTVESLRQTY--KVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVN 265 (403)
Q Consensus 190 ~~G~~SRil~~~~gs~lty~~~~~-~-sApGQ~~~~~l~~~~--~~~~~~~~~~~~~liG~pi~hS~SP~ihn~~~~~~g 265 (403)
+.+..+|++.|.++.++|+..++. + |+|+|....+|.+.| ++.+..+.++.|++.|.|.+|+.+|.+||.+|.+.-
T Consensus 273 qy~~~~lm~ap~a~g~vt~~~vdgk~iS~pyv~mt~~lme~fgvn~~~s~~~~~~y~i~g~~y~~p~~~~ve~dAssa~y 352 (595)
T KOG0692|consen 273 QYLTALLMCAPLALGDVTIEIVDGKLISVPYVEMTLKLMERFGVNVEHSTSWDRFYVIGGQKYKSPGNAYVEGDASSASY 352 (595)
T ss_pred hHHHHHHHhhhhcCCceEEEeecCccccccchhHHHHHHHHhCcCeEecCCCcceEeccCcccCCCCCceeecccccccc
Confidence 999999999999999999999984 3 999999999999999 788999999999999999999999999999999988
Q ss_pred CCceEeecCcccHHHHHHHhcCCCCceEE-ecccchHHHHcccccCCHHHhhccceeEEEEeccCCeEEEEeccHHHHHH
Q 015614 266 YNGIYVPMFVDDLKKFFSTYSSPDFAGFS-VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASIT 344 (403)
Q Consensus 266 l~~~y~~~~~~~~~~~~~~~~~~~~~G~~-VT~P~K~~v~~~~d~~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~ 344 (403)
..+.|...-++..-.++..-...++.||+ |+.|+|.++...+|++++.+.-+||+|++-.+.-|+...++|||..|-+-
T Consensus 353 fla~aa~tg~~~tV~~~g~~Slqgda~Fa~vl~pmgc~v~qt~~svtv~gp~~ga~~~~~lr~iD~m~~m~d~~~t~svv 432 (595)
T KOG0692|consen 353 FLAGAAITGETVTVEGCGTTSLQGDAKFAEVLEPMGCKVSQTENSVTVTGPPRGAFGMRHLRAIDVMNKMPDVAMTLSVV 432 (595)
T ss_pred cceeeeEecceeeeccccceecccccchHhhhccccceeeeecccccccCCCCCcccceehhhhcccccccchhHhHhHH
Confidence 88888876665544455544456899998 99999999999999999999999999999876457899999999999999
Q ss_pred HHHHHHHhcCcCCCCCcCC-----CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 345 AIEDAIKERGYKNGTASFG-----SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~-----~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
++...+...+ +++. .+.-.++..|+|.|+..|+..+...+.+..++|+||+
T Consensus 433 A~~~~~~s~g-----dptti~~~as~rvket~r~ia~~~el~klg~~~~E~~dg~~v~~~~ 488 (595)
T KOG0692|consen 433 ALFAGLRSSG-----DPTTIRDVASWRVKETERMIAICTELRKLGATVEEGSDGYCVITPP 488 (595)
T ss_pred HHhhcccCCC-----CCcccccccchhHHHHHHHHHHHHHHHHhcccccccCceEEEeCCc
Confidence 9987654211 1111 1122357789999999999999888888889999998
No 21
>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []. Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....
Probab=99.95 E-value=4.2e-29 Score=198.75 Aligned_cols=81 Identities=40% Similarity=0.815 Sum_probs=74.8
Q ss_pred eeccCCcccCCHHHHHHHHHhcCCCceEeecCcc--cHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHHhhccce
Q 015614 243 LISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAV 320 (403)
Q Consensus 243 liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~~--~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igav 320 (403)
|+|+||+||+||.|||++|+++|+|+.|.+++++ +++++++.++..+|.|+|||||||+++++++|++|+.|+.+|||
T Consensus 1 viG~pi~hS~SP~~hn~~f~~~g~~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~~VT~P~K~~~~~~~D~~~~~A~~igAv 80 (83)
T PF08501_consen 1 VIGNPISHSLSPLIHNAAFEALGLDAVYIPFEVEPEDLEDFLDALRAPNFRGLNVTMPHKEAAIPYLDELSPSAKAIGAV 80 (83)
T ss_dssp EEESSSTT-SHHHHHHHHHHHTTSSEEEEEEETSTTCHHHHHHHHHHTTESEEEE-TTSTTHHGGGSSEE-HHHHHHTS-
T ss_pred CcCCCcccccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHhcCCCCeeeecchHHHHHHHHhccCCHHHHHhCCc
Confidence 6899999999999999999999999999999985 99999999988999999999999999999999999999999999
Q ss_pred eEE
Q 015614 321 NTI 323 (403)
Q Consensus 321 NTi 323 (403)
|||
T Consensus 81 Ntv 83 (83)
T PF08501_consen 81 NTV 83 (83)
T ss_dssp SEE
T ss_pred ccC
Confidence 997
No 22
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.79 E-value=3.9e-19 Score=172.12 Aligned_cols=128 Identities=19% Similarity=0.276 Sum_probs=114.4
Q ss_pred HHHHHHHHHhcCCCceEeec--Cc--ccHHHHHHHhcCC-CCceEEecccchHHHHc--ccccCCHHHhhccceeEEEEe
Q 015614 254 PILHNPTFRHVNYNGIYVPM--FV--DDLKKFFSTYSSP-DFAGFSVGFPYKEAVMK--FCDEVHPLAQAIAAVNTIIRR 326 (403)
Q Consensus 254 P~ihn~~~~~~gl~~~y~~~--~~--~~~~~~~~~~~~~-~~~G~~VT~P~K~~v~~--~~d~~~~~A~~igavNTi~~~ 326 (403)
-.+|+.+|+++|++..|..+ ++ +++.+.++.++.. ++.|++||+|||+.+.+ ++|++ +.++.++++||+ +
T Consensus 51 ~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I-~~aKDVdg~n~~-n- 127 (283)
T PRK14192 51 VRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAI-SLAKDVDGVTCL-G- 127 (283)
T ss_pred HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhcc-CHHHhcCCCCcc-c-
Confidence 34899999999999999999 55 4688888888654 79999999999999999 99999 889999999998 3
Q ss_pred ccCCe------EEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchh-HHHHHHHHHHHCCCeEEEEec
Q 015614 327 PSDGK------LIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 327 ~~~g~------l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGG-aarai~~al~~~g~~i~v~nR 399 (403)
+|+ ++|+||| .||+..|++. +.+++||+++|+|+|| +||++++.|.+.|+.|++++|
T Consensus 128 --~G~l~~~~~~~~p~T~-~gii~~L~~~-------------~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~ 191 (283)
T PRK14192 128 --FGRMAMGEAAYGSATP-AGIMRLLKAY-------------NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHS 191 (283)
T ss_pred --cCccccCCCcccCCcH-HHHHHHHHHc-------------CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence 566 8999999 9999998764 2568899999999999 999999999999999999998
Q ss_pred C
Q 015614 400 D 400 (403)
Q Consensus 400 ~ 400 (403)
.
T Consensus 192 ~ 192 (283)
T PRK14192 192 R 192 (283)
T ss_pred C
Confidence 4
No 23
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.52 E-value=6.2e-08 Score=83.97 Aligned_cols=39 Identities=33% Similarity=0.487 Sum_probs=35.8
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT 403 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k 403 (403)
.+++++++|+||||+||+++++|.++|+ +|+|+|||.+|
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~r 48 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPER 48 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 4678999999999999999999999999 79999999653
No 24
>PRK08291 ectoine utilization protein EutC; Validated
Probab=98.49 E-value=9.6e-08 Score=95.05 Aligned_cols=72 Identities=17% Similarity=0.186 Sum_probs=59.4
Q ss_pred hhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHH-CCC-
Q 015614 315 QAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-RGA- 392 (403)
Q Consensus 315 ~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~-~g~- 392 (403)
..+|++|||+.+ ++.|.|+|||+.|++.+.. +. ....++++|+|+|+.|++.+.++.. .++
T Consensus 96 ~~tG~~~ai~~d--~~~lt~~rT~a~~~~a~~~--la-------------~~~~~~v~IiGaG~~a~~~~~al~~~~~~~ 158 (330)
T PRK08291 96 ARTGLVEALLLD--NGYLTDVRTAAAGAVAARH--LA-------------REDASRAAVIGAGEQARLQLEALTLVRPIR 158 (330)
T ss_pred CCCCceEEEEcC--CchHHHHHHHHHHHHHHHH--hC-------------CCCCCEEEEECCCHHHHHHHHHHHhcCCCC
Confidence 356999999765 7899999999999999863 22 1234789999999999999999986 567
Q ss_pred eEEEEecCCCC
Q 015614 393 RVVIFDIDFGT 403 (403)
Q Consensus 393 ~i~v~nR~~~k 403 (403)
+|+|+||+.+|
T Consensus 159 ~V~v~~R~~~~ 169 (330)
T PRK08291 159 EVRVWARDAAK 169 (330)
T ss_pred EEEEEcCCHHH
Confidence 89999998653
No 25
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.33 E-value=4.5e-07 Score=90.11 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=59.0
Q ss_pred hccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHH-HCCC-e
Q 015614 316 AIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAK-SRGA-R 393 (403)
Q Consensus 316 ~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~-~~g~-~ 393 (403)
..|++|+++.+ ++.|.|+|||+.|++.+.. +. ....++++|+|+|+.||+.+.+|. ..++ +
T Consensus 94 ~tG~~~ai~~d--~~~lT~~RTaa~~~laa~~--la-------------~~~~~~v~iiGaG~qA~~~~~al~~~~~i~~ 156 (326)
T TIGR02992 94 RTGLLQALLLD--NGYLTDVRTAAAGAVAARH--LA-------------REDSSVVAIFGAGMQARLQLEALTLVRDIRS 156 (326)
T ss_pred CCCCceEEEcC--CchHHHHHHHHHHHHHHHH--hC-------------CCCCcEEEEECCCHHHHHHHHHHHHhCCccE
Confidence 45999999765 7899999999999999863 22 123578999999999999999997 4677 8
Q ss_pred EEEEecCCCC
Q 015614 394 VVIFDIDFGT 403 (403)
Q Consensus 394 i~v~nR~~~k 403 (403)
|+|+||+.+|
T Consensus 157 v~V~~R~~~~ 166 (326)
T TIGR02992 157 ARIWARDSAK 166 (326)
T ss_pred EEEECCCHHH
Confidence 9999999754
No 26
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.13 E-value=4.6e-06 Score=73.19 Aligned_cols=53 Identities=36% Similarity=0.547 Sum_probs=45.5
Q ss_pred ccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614 337 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG 402 (403)
Q Consensus 337 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~ 402 (403)
|||+||..++++.. ...++++++|+|+|+.|++++.+|.+.|. +|++++|+.+
T Consensus 1 td~~g~~~a~~~~~-------------~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~ 54 (155)
T cd01065 1 TDGLGFVRALEEAG-------------IELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLE 54 (155)
T ss_pred CCHHHHHHHHHhhC-------------CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence 89999999987641 23567899999999999999999999975 8999999864
No 27
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.72 E-value=8e-05 Score=70.25 Aligned_cols=48 Identities=29% Similarity=0.405 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC---eEEEEecC
Q 015614 340 EASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDID 400 (403)
Q Consensus 340 ~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~---~i~v~nR~ 400 (403)
.||..+++.. +.++++++++|+||||+|+++++.|.+.|+ +|+|+||+
T Consensus 10 AG~~~al~~~-------------g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 10 AGLLNALKLV-------------GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred HHHHHHHHHh-------------CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 5778877643 135778999999999999999999999997 49999998
No 28
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.52 E-value=1.2e-05 Score=82.77 Aligned_cols=92 Identities=21% Similarity=0.248 Sum_probs=69.6
Q ss_pred chHHHHcccccCCHHHhhccceeEEE-------EeccCCeEEEEeccHHHHHHH-----HHHHHHhcCcCCCCCcCCCCC
Q 015614 299 YKEAVMKFCDEVHPLAQAIAAVNTII-------RRPSDGKLIGYNTDCEASITA-----IEDAIKERGYKNGTASFGSPL 366 (403)
Q Consensus 299 ~K~~v~~~~d~~~~~A~~igavNTi~-------~~~~~g~l~G~NTD~~G~~~~-----l~~~~~~~~~~~~~~~~~~~~ 366 (403)
=+..|+..++.....|+..|++|+++ ++ -++..+++|+..+.-.+ ++.... . ..++
T Consensus 113 GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~~--~~k~v~~~t~i~~~~~Sv~~~Av~~a~~--~--------~~~~ 180 (423)
T PRK00045 113 GEPQILGQVKDAYALAQEAGTVGTILNRLFQKAFS--VAKRVRTETGIGAGAVSVASAAVELAKQ--I--------FGDL 180 (423)
T ss_pred CChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH--HHhhHhhhcCCCCCCcCHHHHHHHHHHH--h--------hCCc
Confidence 36678899999999999999999987 23 45677778886653222 222111 0 0135
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG 402 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~ 402 (403)
.+++++|+|+|++|+.++..|...|+ +|+++||+.+
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ 217 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLE 217 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHH
Confidence 68999999999999999999999998 8999999864
No 29
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.50 E-value=8.3e-05 Score=76.23 Aligned_cols=39 Identities=13% Similarity=0.280 Sum_probs=35.5
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT 403 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k 403 (403)
.+.+++++|+|+||+|++++.+|...|+ +|+|+|||.+|
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~r 217 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEK 217 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHH
Confidence 3678999999999999999999999998 89999999653
No 30
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.27 E-value=0.0013 Score=52.26 Aligned_cols=53 Identities=26% Similarity=0.423 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEec
Q 015614 338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDI 399 (403)
Q Consensus 338 D~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR 399 (403)
.+.|....|++..... +..+++++++|+|+|++|++++..|.+.|. +|++++|
T Consensus 2 t~~~~~~~l~~~~~~~---------~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 2 TAAGAVALLKAAGKVT---------NKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred hhHHHHHHHHHHHHHh---------CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 3567788887765421 245678999999999999999999999965 9999988
No 31
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.07 E-value=0.00099 Score=60.97 Aligned_cols=60 Identities=33% Similarity=0.468 Sum_probs=47.3
Q ss_pred EEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 334 GYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 334 G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
|-||-....+..+++.+.+.+ ..+++++++|+|+ |++|++++..|.+.|++|++++|+.+
T Consensus 3 G~~~ta~aav~~~~~~l~~~~---------~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~ 63 (194)
T cd01078 3 GSNTTAAAAVAAAGKALELMG---------KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLE 63 (194)
T ss_pred CcHHHHHHHHHHHHHHHHHhC---------cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 445666667777777665322 4567899999996 99999999999999999999999854
No 32
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.64 E-value=0.013 Score=57.01 Aligned_cols=125 Identities=16% Similarity=0.218 Sum_probs=78.3
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
....+++|++.....++. +++.+.++.+ .+++..|+-|-.|.-..+ ...++.++|. +.+-..+..- -|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 128 (286)
T PRK14175 54 KKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPE-KDVDGFHPIN----IG 128 (286)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcccCCccc----hH
Confidence 346789999987666654 3566666666 457899999999964222 1122222221 1222221110 01
Q ss_pred eEE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchh-HHHHHHHHHHHCCCeEEEEecC
Q 015614 331 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 331 ~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGG-aarai~~al~~~g~~i~v~nR~ 400 (403)
+++ | .-.--.|++..|+.. +.+++||+++|+|.|+ +|+.++..|...|+.|++++|.
T Consensus 129 ~l~~~~~~~~PcTp~ai~~ll~~~-------------~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~ 191 (286)
T PRK14175 129 KLYIDEQTFVPCTPLGIMEILKHA-------------DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR 191 (286)
T ss_pred hHhcCCCCCCCCcHHHHHHHHHHc-------------CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence 111 1 112345666666543 2568899999999999 8999999999999999988874
No 33
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=96.64 E-value=0.07 Score=48.82 Aligned_cols=130 Identities=16% Similarity=0.146 Sum_probs=83.8
Q ss_pred eeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhc-CCCcEEEEeecCCCCCCCCCCHHHHHH
Q 015614 11 TMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLE 89 (403)
Q Consensus 11 ~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ 89 (403)
|.||+.|-.++.++....++..... ++.+|+-+.+..... .+.++.+++. .+.|++...... . .. . .
T Consensus 1 ~~~~~a~d~~~~~~~~~~~~~l~~~-i~~ieig~~~~~~~g-~~~i~~i~~~~~~~~i~~~~~v~-~-----~~--~--~ 68 (202)
T cd04726 1 PLLQVALDLLDLEEALELAKKVPDG-VDIIEAGTPLIKSEG-MEAVRALREAFPDKIIVADLKTA-D-----AG--A--L 68 (202)
T ss_pred CceEEEEcCCCHHHHHHHHHHhhhc-CCEEEcCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEEec-c-----cc--H--H
Confidence 4689999999999999888776555 999999766654332 3567788775 588998865532 1 11 1 2
Q ss_pred HHHHHHHcCCcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614 90 ALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (403)
Q Consensus 90 ll~~~~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi 159 (403)
.++.+.+.|++++=+-.....+...++. ..++.+.++++..+.. .|| ++.. + +...|+|++++
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~-~t~--~e~~---~-~~~~~~d~v~~ 132 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGV-EDP--EKRA---K-LLKLGVDIVIL 132 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCC-CCH--HHHH---H-HHHCCCCEEEE
Confidence 3477888999998876554332222333 2334577888765432 122 3333 2 55668999998
No 34
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.58 E-value=0.0019 Score=65.80 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=36.1
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT 403 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k 403 (403)
.+++++++|+|||-++.-++..|.+.|+ +|+|+|||.+|
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~er 214 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLER 214 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHH
Confidence 3678999999999999999999999998 99999999764
No 35
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.52 E-value=0.0029 Score=61.81 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=35.9
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
..+++++++|+|+|++|++++..|..+|++|+++||+.+
T Consensus 147 ~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 147 FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 457899999999999999999999999999999999854
No 36
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.46 E-value=0.0071 Score=54.45 Aligned_cols=37 Identities=30% Similarity=0.378 Sum_probs=33.8
Q ss_pred CCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEecCC
Q 015614 365 PLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 365 ~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR~~ 401 (403)
.+.+++++|+|+|++ ++.++..|.+.|++|+++||+.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 578999999999996 8889999999999999999985
No 37
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=96.33 E-value=0.33 Score=46.29 Aligned_cols=147 Identities=18% Similarity=0.159 Sum_probs=90.9
Q ss_pred ccCCHHHHHHHHHHHHhcCCCEEEEEecCCC-CCCCc-hHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHH---HHHHH
Q 015614 18 MAQSVEQVLSNMYQAKAEGADVVEIRLDCIN-NFQPG-KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR---LEALH 92 (403)
Q Consensus 18 ~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~---~~ll~ 92 (403)
...+++++. .+.+.|||-|||.-++-. ...|. ..++.+++...+|+.+-+|+. ||.|-.++++. .+=++
T Consensus 7 cv~s~~~a~----~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR--~gdF~Ys~~E~~~M~~di~ 80 (248)
T PRK11572 7 CCYSMECAL----TAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVTIPVHPIIRPR--GGDFCYSDGEFAAMLEDIA 80 (248)
T ss_pred EECCHHHHH----HHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhcCCCeEEEEecC--CCCCCCCHHHHHHHHHHHH
Confidence 345555554 445789999999988754 33443 345666777799999999985 56666666443 33455
Q ss_pred HHHHcCCcEEEE-----eccccchHHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH
Q 015614 93 LAEDLGADYVDF-----ELKVASNILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI 166 (403)
Q Consensus 93 ~~~~~g~~yvDi-----El~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~ 166 (403)
.+.++|++.|=+ |-..+.+..++|+.. .++.++ .||- |+.+++. .+-++.+.++|.|=|==.--+.+.
T Consensus 81 ~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~-a~~~~v--TFHRAfD~~~d~---~~al~~l~~lG~~rILTSGg~~~a 154 (248)
T PRK11572 81 TVRELGFPGLVTGVLDVDGHVDMPRMRKIMAA-AGPLAV--TFHRAFDMCANP---LNALKQLADLGVARILTSGQQQDA 154 (248)
T ss_pred HHHHcCCCEEEEeeECCCCCcCHHHHHHHHHH-hcCCce--EEechhhccCCH---HHHHHHHHHcCCCEEECCCCCCCH
Confidence 667888887765 333344556667643 234444 6776 8888754 455777777785433222223445
Q ss_pred hHHHHHHHHh
Q 015614 167 TEIARIFQLL 176 (403)
Q Consensus 167 ~D~~~ll~~~ 176 (403)
.|.+..++-+
T Consensus 155 ~~g~~~L~~l 164 (248)
T PRK11572 155 EQGLSLIMEL 164 (248)
T ss_pred HHHHHHHHHH
Confidence 5655555443
No 38
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.30 E-value=0.0057 Score=60.91 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=35.0
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG 402 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~ 402 (403)
.+.+++++|+|+|-+|+-++..|.+.|+ +|+|+|||.+
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~ 209 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL 209 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4678999999999999999999999998 8999999953
No 39
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.29 E-value=0.0098 Score=55.00 Aligned_cols=57 Identities=21% Similarity=0.259 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 339 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
+.|...+++..+...- .+..++|++++|+|.|..|++++..|.+.|++|++++++.+
T Consensus 6 g~Gv~~~~~~~~~~~~-------~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~ 62 (200)
T cd01075 6 AYGVFLGMKAAAEHLL-------GTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEE 62 (200)
T ss_pred HHHHHHHHHHHHHHhc-------CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 4677777777665320 02567899999999999999999999999999999998753
No 40
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=96.26 E-value=0.16 Score=47.87 Aligned_cols=151 Identities=19% Similarity=0.239 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhc--CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCc
Q 015614 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK--KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGAD 100 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~--~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~ 100 (403)
++....++++.+.|+|++=+..- .+....+. .+.|++..++...-=|....+.+....-++.+++.|++
T Consensus 21 ~d~~~~~~~~~~~g~~av~v~~~---------~~~~~~~~~~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~Ga~ 91 (235)
T cd00958 21 EDPEETVKLAAEGGADAVALTKG---------IARAYGREYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRLGAD 91 (235)
T ss_pred cCHHHHHHHHHhcCCCEEEeChH---------HHHhcccccCCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHCCCC
Confidence 34444455656678999877422 22221111 35577777763211111122335555667899999999
Q ss_pred EEEEeccccch-------HHHHHH-hccCCCcEEEEeccCCCCC----CCHhHHHHHHHHHHHcCCCEEEEEeecCCHhH
Q 015614 101 YVDFELKVASN-------ILGKQY-SSHQSGTRFIVSCNLDCET----PSEEDLGYLVSRMQATGADIIKLVFSVNDITE 168 (403)
Q Consensus 101 yvDiEl~~~~~-------~~~~l~-~~~~~~~kiI~S~H~f~~t----p~~~~l~~~~~~~~~~gadivKia~~~~~~~D 168 (403)
.||+.++.... ...++. ..++.+.++|+--|..... -+.+++....+.+.+.|||++|+-.+ . |
T Consensus 92 ~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~-~---~ 167 (235)
T cd00958 92 AVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYT-G---D 167 (235)
T ss_pred EEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCC-C---C
Confidence 99998866431 233333 2345788999865541100 12244555567788899999999432 2 3
Q ss_pred HHHHHHHhccCCCCEEEE
Q 015614 169 IARIFQLLSHCQVPIIAY 186 (403)
Q Consensus 169 ~~~ll~~~~~~~~p~i~~ 186 (403)
...+-++....+.|+++.
T Consensus 168 ~~~~~~i~~~~~~pvv~~ 185 (235)
T cd00958 168 AESFKEVVEGCPVPVVIA 185 (235)
T ss_pred HHHHHHHHhcCCCCEEEe
Confidence 333444444456776443
No 41
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.24 E-value=0.04 Score=54.06 Aligned_cols=126 Identities=14% Similarity=0.207 Sum_probs=77.6
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
....+++|++..-..++. +++.+.++.+ .++...|+-|-+|.-..+- ..++.++|. +.+-..+..- -|
T Consensus 55 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~-KDVDGl~~~N----~g 129 (301)
T PRK14194 55 ILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPL-KDVDGFHSEN----VG 129 (301)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCch-hccCccChhh----hh
Confidence 346788999987666653 3566777777 4578999999999742110 111111111 1111111100 01
Q ss_pred eE-EEE----eccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcch-hHHHHHHHHHHHCCCeEEEEecCC
Q 015614 331 KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 331 ~l-~G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaG-Gaarai~~al~~~g~~i~v~nR~~ 401 (403)
++ .|. -.--.|++.-|+.. +.+++||+++|+|.| =+|+.++.-|.+.|+.|++++|+.
T Consensus 130 ~l~~~~~~~~PcTp~aii~lL~~~-------------~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t 193 (301)
T PRK14194 130 GLSQGRDVLTPCTPSGCLRLLEDT-------------CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS 193 (301)
T ss_pred HHhcCCCCCCCCcHHHHHHHHHHh-------------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC
Confidence 11 111 12245777766553 257899999999997 569999999999999999998753
No 42
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.22 E-value=0.17 Score=46.54 Aligned_cols=108 Identities=17% Similarity=0.189 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHH---hcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015614 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~ 99 (403)
+++...++.+.+.|+|+|++|.--+...+..+.+..++ ...+.|+++. +.++.+.+.|+
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------~~~~~a~~~ga 82 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPLIVN------------------DRVDLALAVGA 82 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe------------------ChHHHHHHcCC
Confidence 44666677777889999999965433211112233332 2346787763 12456778899
Q ss_pred cEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614 100 DYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV 160 (403)
Q Consensus 100 ~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia 160 (403)
++|=+...... ...+...+..+.++-+|.|+ .+++ .++...|+|++++-
T Consensus 83 d~vh~~~~~~~--~~~~~~~~~~~~~~g~~~~t------~~e~----~~a~~~gaD~v~~~ 131 (212)
T PRK00043 83 DGVHLGQDDLP--VADARALLGPDAIIGLSTHT------LEEA----AAALAAGADYVGVG 131 (212)
T ss_pred CEEecCcccCC--HHHHHHHcCCCCEEEEeCCC------HHHH----HHHhHcCCCEEEEC
Confidence 99877654322 11222233456678888773 2333 34446799999873
No 43
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.21 E-value=0.22 Score=46.36 Aligned_cols=120 Identities=15% Similarity=0.181 Sum_probs=77.3
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHH
Q 015614 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL 91 (403)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 91 (403)
.++..+...+.+++...++.+.+.|+.++|+|++--. ..+.++.+++..+-++++-.=+ .. ..++ +
T Consensus 11 ~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~---~~~~i~~l~~~~~~~~~iGaGT-----V~---~~~~---~ 76 (206)
T PRK09140 11 PLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPD---PFDSIAALVKALGDRALIGAGT-----VL---SPEQ---V 76 (206)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCcc---HHHHHHHHHHHcCCCcEEeEEe-----cC---CHHH---H
Confidence 4566788999999999999999999999999976432 2346777776665555533211 11 1122 3
Q ss_pred HHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614 92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (403)
Q Consensus 92 ~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi 159 (403)
+.+++.|++++=.--... +..+. .+..+.-++.+.|+ | +| +.++.+.|+|++|+
T Consensus 77 ~~a~~aGA~fivsp~~~~-~v~~~---~~~~~~~~~~G~~t----~--~E----~~~A~~~Gad~vk~ 130 (206)
T PRK09140 77 DRLADAGGRLIVTPNTDP-EVIRR---AVALGMVVMPGVAT----P--TE----AFAALRAGAQALKL 130 (206)
T ss_pred HHHHHcCCCEEECCCCCH-HHHHH---HHHCCCcEEcccCC----H--HH----HHHHHHcCCCEEEE
Confidence 567888998875532221 22221 22456778888774 2 33 35566789999997
No 44
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.19 E-value=0.0057 Score=60.04 Aligned_cols=38 Identities=26% Similarity=0.299 Sum_probs=34.7
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
.+.+++++|+|+|++|++++..|+.+|++|++++|+.+
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 45689999999999999999999999999999999853
No 45
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.02 E-value=0.2 Score=48.87 Aligned_cols=84 Identities=20% Similarity=0.372 Sum_probs=60.2
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCC----------CCCCC-chHHHHHHhcCCCcEEEEeecCCCCCCC
Q 015614 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCI----------NNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLY 80 (403)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l----------~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~ 80 (403)
.+.++|.+.+.+++..-++.+.+.|+|.||+-+-+- .+.+. .+.++.+++..++|+.+-++..
T Consensus 91 p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~------ 164 (296)
T cd04740 91 PVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPN------ 164 (296)
T ss_pred cEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCC------
Confidence 367999999999998888888888999999965331 11110 1345556666689999887632
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEE
Q 015614 81 EGDEHKRLEALHLAEDLGADYVDF 104 (403)
Q Consensus 81 ~~~~~~~~~ll~~~~~~g~~yvDi 104 (403)
.++-.++.+.+.+.|+++|++
T Consensus 165 ---~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 165 ---VTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred ---chhHHHHHHHHHHcCCCEEEE
Confidence 224567778888899999876
No 46
>PLN00203 glutamyl-tRNA reductase
Probab=95.95 E-value=0.0071 Score=63.79 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=34.8
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT 403 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k 403 (403)
+.+++++|+|+|++|++++..|...|+ +|+|+||+.+|
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~er 302 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEER 302 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHH
Confidence 668999999999999999999999998 89999998653
No 47
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.94 E-value=0.068 Score=48.89 Aligned_cols=119 Identities=17% Similarity=0.110 Sum_probs=68.4
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHH
Q 015614 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL 91 (403)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 91 (403)
.++..+...+.++....++.+++.|+.+||+|..-... .+.++.+++.. |.+ .. .+|.. ... ++ +
T Consensus 13 ~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~---~e~~~~~~~~~--~~~-~~----g~gtv-l~~-d~---~ 77 (187)
T PRK07455 13 RAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQP---AELISQLREKL--PEC-II----GTGTI-LTL-ED---L 77 (187)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCH---HHHHHHHHHhC--CCc-EE----eEEEE-EcH-HH---H
Confidence 45667899999999999999999999999999765432 23444444333 221 00 11221 111 33 3
Q ss_pred HHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614 92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (403)
Q Consensus 92 ~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi 159 (403)
+.+++.|+++|=+--...+ ..+ .... .+...+++ .|+ | +| +.++.+.|+|++|+
T Consensus 78 ~~A~~~gAdgv~~p~~~~~-~~~-~~~~-~~~~~i~G-~~t----~--~e----~~~A~~~Gadyv~~ 131 (187)
T PRK07455 78 EEAIAAGAQFCFTPHVDPE-LIE-AAVA-QDIPIIPG-ALT----P--TE----IVTAWQAGASCVKV 131 (187)
T ss_pred HHHHHcCCCEEECCCCCHH-HHH-HHHH-cCCCEEcC-cCC----H--HH----HHHHHHCCCCEEEE
Confidence 5678889999832211111 111 1111 23335566 553 3 23 34455689999998
No 48
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=95.83 E-value=1.2 Score=43.31 Aligned_cols=204 Identities=14% Similarity=0.067 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhcCCCEEEEEecCC-------CCCCCchHHHHHHhc-CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHH
Q 015614 24 QVLSNMYQAKAEGADVVEIRLDCI-------NNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAE 95 (403)
Q Consensus 24 e~~~~~~~~~~~~~D~vElRlD~l-------~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~ 95 (403)
+.+.-+....+.|+|.||+=.-.. ...++.+.+..+++. .+.++..-.|..+.=|..+...+-..+.++.+.
T Consensus 22 ~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~ 101 (275)
T cd07937 22 DMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEKAA 101 (275)
T ss_pred HHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHHHH
Confidence 333334444567999999975331 122334566666654 367888888876554544445556677888999
Q ss_pred HcCCcEEEEeccccc--hHHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--CHhHHH
Q 015614 96 DLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVN--DITEIA 170 (403)
Q Consensus 96 ~~g~~yvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gadivKia~~~~--~~~D~~ 170 (403)
+.|+++|-|-....+ ...+.+...+..+.++...... +....+.+.+.+..+++.+.|+|.+-++=+.- ++.++.
T Consensus 102 ~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~ 181 (275)
T cd07937 102 KNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAY 181 (275)
T ss_pred HcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHH
Confidence 999999888554432 2222222334456666654432 22223567899999999999999998886654 478888
Q ss_pred HHHHHhccC-CCCEEE-----EEcCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614 171 RIFQLLSHC-QVPIIA-----YSVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (403)
Q Consensus 171 ~ll~~~~~~-~~p~i~-----~~MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~ 230 (403)
++.+.+.+. +.|+-. ++|+. ..-+..-..|....-+++.+ +-..|+.+++++...++
T Consensus 182 ~lv~~l~~~~~~~l~~H~Hnd~GlA~---aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~ 245 (275)
T cd07937 182 ELVKALKKEVGLPIHLHTHDTSGLAV---ATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALR 245 (275)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHH---HHHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHH
Confidence 887776543 444322 12222 22222222344444344432 23478888888876654
No 49
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.61 E-value=0.07 Score=52.33 Aligned_cols=126 Identities=14% Similarity=0.209 Sum_probs=75.9
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
....+++|++..-..++. +++.+.++.+ .++++.|+-|-.|+-..+- ..++.++|. +.+-..+.+- -|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~-KDVDGl~~~n----~g 128 (296)
T PRK14188 54 GKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPE-KDVDGLHVVN----AG 128 (296)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcc-cccccCChhh----HH
Confidence 346789999876444432 3566777777 4578999999999742210 111111111 1111111000 01
Q ss_pred eEE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEc-chhHHHHHHHHHHHCCCeEEEE-ecCC
Q 015614 331 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAG-AGGAGRALAFGAKSRGARVVIF-DIDF 401 (403)
Q Consensus 331 ~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilG-aGGaarai~~al~~~g~~i~v~-nR~~ 401 (403)
++. | .-.--.|++.-|+.. +.+++||+++|+| +|-+|+.++.-|.+.|+.|+++ +||.
T Consensus 129 ~l~~~~~~~~PcTp~ai~~ll~~~-------------~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~ 193 (296)
T PRK14188 129 RLATGETALVPCTPLGCMMLLRRV-------------HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR 193 (296)
T ss_pred HHhCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC
Confidence 110 0 111256666666543 2568899999999 7888999999999999999999 4774
No 50
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=95.58 E-value=0.15 Score=46.95 Aligned_cols=130 Identities=17% Similarity=0.077 Sum_probs=85.4
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHH
Q 015614 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEA 90 (403)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~l 90 (403)
.+|+.+-..+.++...-++.. ..|.|.||+-.-++.... .+.++.+++.. +.++++....- + ...+ -
T Consensus 1 ~l~~alD~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~-d-------~~~~--~ 68 (206)
T TIGR03128 1 KLQLALDLLDIEEALELAEKV-ADYVDIIEIGTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTM-D-------AGEY--E 68 (206)
T ss_pred CeEEEecCCCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeec-c-------chHH--H
Confidence 378999999999999888776 888999999644544332 25677887763 56677665532 1 1111 3
Q ss_pred HHHHHHcCCcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614 91 LHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (403)
Q Consensus 91 l~~~~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi 159 (403)
++.+.+.|+++|-+-...+.....+++ ..++.+.++++..++.. | ..+....+.++|+|++|+
T Consensus 69 ~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~-t-----~~~~~~~~~~~g~d~v~~ 132 (206)
T TIGR03128 69 AEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVK-D-----KVKRAKELKELGADYIGV 132 (206)
T ss_pred HHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCC-C-----hHHHHHHHHHcCCCEEEE
Confidence 567888999999877665432223333 23456889998766531 2 233445556779999988
No 51
>PRK08328 hypothetical protein; Provisional
Probab=95.49 E-value=0.016 Score=54.75 Aligned_cols=35 Identities=26% Similarity=0.526 Sum_probs=31.9
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~ 400 (403)
+++++++|+|+||.|.+++..|+..|+ +|+|++.+
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 346789999999999999999999999 99999875
No 52
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.31 E-value=0.019 Score=47.14 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=31.1
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
++++++++|+|+|..|..-+..|.+.|++|+|++.+
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 467899999999999999999999999999999876
No 53
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.30 E-value=0.051 Score=48.52 Aligned_cols=38 Identities=37% Similarity=0.541 Sum_probs=30.1
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
..+.||+++|+|-|-.+|.+|..|+.+|++|+|+.+++
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 56789999999999999999999999999999998875
No 54
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=95.28 E-value=0.51 Score=44.39 Aligned_cols=138 Identities=18% Similarity=0.212 Sum_probs=84.1
Q ss_pred EEeccc--CCHHHHHHHHHHHHhcCCCEE--EEEecCCCCCCCchHHHHHH---hcCCCcEEEEeecCCCCCCCC--CCH
Q 015614 14 CAPLMA--QSVEQVLSNMYQAKAEGADVV--EIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYE--GDE 84 (403)
Q Consensus 14 cv~l~~--~~~~e~~~~~~~~~~~~~D~v--ElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~--~~~ 84 (403)
|+++.+ .+......+++++...|+|.+ .+|+-.+......+.+..++ +...+|+|+..+.. |.... .++
T Consensus 65 ~~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~--g~~~~~~~~~ 142 (235)
T cd00958 65 STSLSPKDDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPR--GPAVKNEKDP 142 (235)
T ss_pred CCCCCCCCCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEecc--CCcccCccCH
Confidence 455554 566777778889999999988 77755443211122344444 34689999977652 33221 233
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015614 85 HKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII 157 (403)
Q Consensus 85 ~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadiv 157 (403)
++-.+..+.+.+.|+|||=+......+.++++... -...++++=.. +..+.++..+.+.++.+.|++-+
T Consensus 143 ~~i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~--~~~pvv~~GG~--~~~~~~~~l~~~~~~~~~Ga~gv 211 (235)
T cd00958 143 DLIAYAARIGAELGADIVKTKYTGDAESFKEVVEG--CPVPVVIAGGP--KKDSEEEFLKMVYDAMEAGAAGV 211 (235)
T ss_pred HHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHhc--CCCCEEEeCCC--CCCCHHHHHHHHHHHHHcCCcEE
Confidence 33333466788999999999654333455666532 23445555321 22355778888888999999844
No 55
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.26 E-value=1.7 Score=38.95 Aligned_cols=141 Identities=16% Similarity=0.202 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcC---CCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHc
Q 015614 21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK---PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDL 97 (403)
Q Consensus 21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~---~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~ 97 (403)
+.+.+...++...+.|+|.+++-- +.+..+++.. +.|+++.+-... +. ..-++-.+..+.+.+.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------~~i~~~~~~~~~~~~~v~~~v~~~~--~~--~~~~~~~~~a~~a~~~ 77 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------GYVRLAADALAGSDVPVIVVVGFPT--GL--TTTEVKVAEVEEAIDL 77 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------HHHHHHHHHhCCCCCeEEEEecCCC--CC--CcHHHHHHHHHHHHHc
Confidence 677777777777888999999854 3444454432 588887665421 11 2246777888999999
Q ss_pred CCcEEEEecccc-------c---hHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC---
Q 015614 98 GADYVDFELKVA-------S---NILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--- 164 (403)
Q Consensus 98 g~~yvDiEl~~~-------~---~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~--- 164 (403)
|++.+.+-.... + +.++++...-+.+..+++- +....+.+.+++.+..+.+...|+|.+|......
T Consensus 78 Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy-~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~ 156 (201)
T cd00945 78 GADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVI-LETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGG 156 (201)
T ss_pred CCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEE-EECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCC
Confidence 999999864431 1 2223333221124444443 3333333456677776667778999999776422
Q ss_pred -CHhHHHHHHHH
Q 015614 165 -DITEIARIFQL 175 (403)
Q Consensus 165 -~~~D~~~ll~~ 175 (403)
+.+....+.+.
T Consensus 157 ~~~~~~~~i~~~ 168 (201)
T cd00945 157 ATVEDVKLMKEA 168 (201)
T ss_pred CCHHHHHHHHHh
Confidence 44555444433
No 56
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.25 E-value=0.019 Score=56.72 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=33.7
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG 402 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~ 402 (403)
+.+++++|+|+|.+|+.++..|...|+ +|+++||+.+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ 213 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYE 213 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 568999999999999999999998887 8999999865
No 57
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=95.22 E-value=0.02 Score=59.00 Aligned_cols=37 Identities=27% Similarity=0.477 Sum_probs=34.0
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG 402 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~ 402 (403)
+.+++++|+|+|.+|+.++..|...|+ +|+++||+.+
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ 215 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYE 215 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence 568999999999999999999999997 9999999864
No 58
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=95.15 E-value=0.75 Score=45.11 Aligned_cols=84 Identities=21% Similarity=0.304 Sum_probs=58.8
Q ss_pred CeeEEEecccC-CHHHHHHHHHHHHhcCCCEEEEEecCCCCC-----------CC---chHHHHHHhcCCCcEEEEeecC
Q 015614 10 TTMICAPLMAQ-SVEQVLSNMYQAKAEGADVVEIRLDCINNF-----------QP---GKDLEIILTKKPLPVLIVYRPK 74 (403)
Q Consensus 10 ~~~icv~l~~~-~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-----------~~---~~~l~~l~~~~~~PiI~T~R~~ 74 (403)
+|. .+++.+. +.++...-++.+.+.|+|+|||=+.+-... ++ .+.++.+++..++|+.+-+|..
T Consensus 100 ~p~-i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~ 178 (299)
T cd02940 100 KIL-IASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPN 178 (299)
T ss_pred CeE-EEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCC
Confidence 454 5888888 999988888777667899999988875421 11 1233344556689999998852
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCcEEE
Q 015614 75 WAGGLYEGDEHKRLEALHLAEDLGADYVD 103 (403)
Q Consensus 75 ~eGG~~~~~~~~~~~ll~~~~~~g~~yvD 103 (403)
.....++.+.+.+.|++.|-
T Consensus 179 ---------~~~~~~~a~~~~~~Gadgi~ 198 (299)
T cd02940 179 ---------ITDIREIARAAKEGGADGVS 198 (299)
T ss_pred ---------chhHHHHHHHHHHcCCCEEE
Confidence 12456777778888999875
No 59
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=95.14 E-value=2.6 Score=45.35 Aligned_cols=205 Identities=13% Similarity=0.104 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCCchHHHHHHhc-CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHH
Q 015614 23 EQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLA 94 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~ 94 (403)
++.+.-++...+.|.+.||.- .|. +...++.+.+..+++. .+.++..-+|..+--|.....++-..+.++.+
T Consensus 21 ~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a 100 (582)
T TIGR01108 21 EDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVKKA 100 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHHHH
Confidence 444444444455699999995 553 2222445677777764 36788888887777776666666677788999
Q ss_pred HHcCCcEEEEeccccc--hHHHHHHhccCCCcEEEEec-cCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--CHh
Q 015614 95 EDLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVSC-NLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--DIT 167 (403)
Q Consensus 95 ~~~g~~yvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~-H~f~~tp--~~~~l~~~~~~~~~~gadivKia~~~~--~~~ 167 (403)
++.|++.+-+=....+ +....+...+..+..+.++. +.+ +| +.+.+.++.+++.+.|||.+-|+=|.- ++.
T Consensus 101 ~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~--~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~ 178 (582)
T TIGR01108 101 VENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTT--SPVHTLETYLDLAEELLEMGVDSICIKDMAGILTPK 178 (582)
T ss_pred HHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEecc--CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHH
Confidence 9999998887655433 23333333334455555442 223 55 567899999999999999988886664 578
Q ss_pred HHHHHHHHhcc-CCCCEEEE---EcCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614 168 EIARIFQLLSH-CQVPIIAY---SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (403)
Q Consensus 168 D~~~ll~~~~~-~~~p~i~~---~MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~ 230 (403)
++.++.+.+.+ .+.|+ .+ +.--.+..+-+..-.-|....-+++.. +-..||++++++...++
T Consensus 179 ~v~~lv~~lk~~~~~pi-~~H~Hnt~Gla~An~laAveaGa~~vd~ai~GlG~~tGn~~le~vv~~L~ 245 (582)
T TIGR01108 179 AAYELVSALKKRFGLPV-HLHSHATTGMAEMALLKAIEAGADGIDTAISSMSGGTSHPPTETMVAALR 245 (582)
T ss_pred HHHHHHHHHHHhCCCce-EEEecCCCCcHHHHHHHHHHhCCCEEEeccccccccccChhHHHHHHHHH
Confidence 88888777543 24443 22 222233344443333444444344432 24578888888776655
No 60
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=95.14 E-value=0.87 Score=41.53 Aligned_cols=119 Identities=19% Similarity=0.237 Sum_probs=69.5
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHH
Q 015614 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL 91 (403)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 91 (403)
.++..+...+.+++...++.+.+.|+++||+|+.--. ..+.++.+++..+- +.+. +|..- +. + -+
T Consensus 5 ~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~---~~~~i~~l~~~~~~-~~iG------ag~v~-~~-~---~~ 69 (190)
T cd00452 5 PLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPG---ALEAIRALRKEFPE-ALIG------AGTVL-TP-E---QA 69 (190)
T ss_pred cEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChh---HHHHHHHHHHHCCC-CEEE------EEeCC-CH-H---HH
Confidence 3456688899999999999999999999999976322 22456666655431 2222 22221 11 2 23
Q ss_pred HHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614 92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (403)
Q Consensus 92 ~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi 159 (403)
+.++..|+++|=.--. ..+..+ ..+..+.++|.-.. | .+| ..++.+.|||++|+
T Consensus 70 ~~a~~~Ga~~i~~p~~-~~~~~~---~~~~~~~~~i~gv~----t--~~e----~~~A~~~Gad~i~~ 123 (190)
T cd00452 70 DAAIAAGAQFIVSPGL-DPEVVK---AANRAGIPLLPGVA----T--PTE----IMQALELGADIVKL 123 (190)
T ss_pred HHHHHcCCCEEEcCCC-CHHHHH---HHHHcCCcEECCcC----C--HHH----HHHHHHCCCCEEEE
Confidence 5667789998843211 112221 12234566666443 2 233 34445689999998
No 61
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.05 E-value=0.15 Score=49.72 Aligned_cols=124 Identities=18% Similarity=0.300 Sum_probs=76.9
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
...++++|++.....++. +++...++.+ .++++.|+-|-.|....+ ...++.++|. +.+-..+-.- -|
T Consensus 60 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~-KDVDGl~~~N----~g 134 (287)
T PRK14176 60 HKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPA-KDADGFHPYN----MG 134 (287)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc-ccccccChhh----hh
Confidence 356889999988777654 3566777777 457899999999975322 1111111111 1111110000 01
Q ss_pred eEE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchh-HHHHHHHHHHHCCCeEEEEec
Q 015614 331 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 331 ~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGG-aarai~~al~~~g~~i~v~nR 399 (403)
+++ | .-.--.|++..|+.. +.+++||+++|+|.|. .||.++.-|...|+.|+++..
T Consensus 135 ~l~~g~~~~~PcTp~av~~ll~~~-------------~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs 196 (287)
T PRK14176 135 KLMIGDEGLVPCTPHGVIRALEEY-------------GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHV 196 (287)
T ss_pred hHhcCCCCCCCCcHHHHHHHHHHc-------------CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEec
Confidence 111 1 112345666666543 2578999999999998 799999999999999999874
No 62
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.03 E-value=0.13 Score=50.16 Aligned_cols=125 Identities=18% Similarity=0.260 Sum_probs=77.0
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
...++++|++.....++. +++.+.++.+ .+++..|+-|-.|+...+ ...++.+++. +.+-..+..- -|
T Consensus 55 ~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~-KDVDGl~~~n----~g 129 (285)
T PRK10792 55 RKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPD-KDVDGFHPYN----VG 129 (285)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cccCccChhh----Hh
Confidence 356789999987666643 3566777777 456799999999975221 1111111110 1111111000 01
Q ss_pred eE-EE----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchh-HHHHHHHHHHHCCCeEEEEecC
Q 015614 331 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 331 ~l-~G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGG-aarai~~al~~~g~~i~v~nR~ 400 (403)
++ .| .-.--.|++..|+.. +.+++||+++|+|-|. .||.++.-|...|+.|+++.+.
T Consensus 130 ~l~~~~~~~~PcTp~av~~ll~~~-------------~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~ 192 (285)
T PRK10792 130 RLAQRIPLLRPCTPRGIMTLLERY-------------GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF 192 (285)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC
Confidence 11 01 122345666666543 2578899999999999 7999999999999999998763
No 63
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.01 E-value=0.051 Score=55.95 Aligned_cols=40 Identities=33% Similarity=0.512 Sum_probs=35.8
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFGT 403 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~k 403 (403)
..+.|++++|+|.|..|+.++..|..+|++|+++++++.|
T Consensus 208 ~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~r 247 (425)
T PRK05476 208 VLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPIC 247 (425)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchh
Confidence 3467999999999999999999999999999999988653
No 64
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=95.00 E-value=0.82 Score=42.36 Aligned_cols=125 Identities=23% Similarity=0.353 Sum_probs=70.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCEEEEEecCCC-CCCCc-hHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHH---HHHHHH
Q 015614 19 AQSVEQVLSNMYQAKAEGADVVEIRLDCIN-NFQPG-KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR---LEALHL 93 (403)
Q Consensus 19 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~---~~ll~~ 93 (403)
..+++++. .+.+.|||-|||.-++-. .+.|. ..++.+++..++|+-+-+|+. ||.|-.++++. .+-++.
T Consensus 7 v~s~~~a~----~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRpr--~gdF~Ys~~E~~~M~~dI~~ 80 (201)
T PF03932_consen 7 VESLEDAL----AAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVDIPVHVMIRPR--GGDFVYSDEEIEIMKEDIRM 80 (201)
T ss_dssp ESSHHHHH----HHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTTSEEEEE--SS--SS-S---HHHHHHHHHHHHH
T ss_pred eCCHHHHH----HHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcCCceEEEECCC--CCCccCCHHHHHHHHHHHHH
Confidence 34555554 445789999999987653 33332 456677778899999999975 56666666544 344556
Q ss_pred HHHcCCcEEEEec-----cccchHHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCC
Q 015614 94 AEDLGADYVDFEL-----KVASNILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGAD 155 (403)
Q Consensus 94 ~~~~g~~yvDiEl-----~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gad 155 (403)
+.++|++-+-+=. ..+.+..++|+.. .++..+.. |- |+.+++..+ -++.+.++|.+
T Consensus 81 ~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~-a~~~~~tF--HRAfD~~~d~~~---al~~L~~lG~~ 142 (201)
T PF03932_consen 81 LRELGADGFVFGALTEDGEIDEEALEELIEA-AGGMPVTF--HRAFDEVPDPEE---ALEQLIELGFD 142 (201)
T ss_dssp HHHTT-SEEEE--BETTSSB-HHHHHHHHHH-HTTSEEEE---GGGGGSSTHHH---HHHHHHHHT-S
T ss_pred HHHcCCCeeEEEeECCCCCcCHHHHHHHHHh-cCCCeEEE--eCcHHHhCCHHH---HHHHHHhcCCC
Confidence 7788998776632 2233455666643 24555554 64 899987544 45566666755
No 65
>PRK06141 ornithine cyclodeaminase; Validated
Probab=94.86 E-value=0.042 Score=54.36 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=31.7
Q ss_pred CCCeEEEEcchhHHHHHHHHHHH-CCC-eEEEEecCCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFGT 403 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~-~g~-~i~v~nR~~~k 403 (403)
..++++|+|+|+.|++.+.++.. .+. +|+|+||+++|
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~ 162 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAK 162 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence 46899999999999999988776 566 89999998753
No 66
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.75 E-value=0.033 Score=56.55 Aligned_cols=34 Identities=32% Similarity=0.422 Sum_probs=31.7
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~ 400 (403)
++++|+|+|+||.|..++..|+..|+ +|++++++
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35789999999999999999999999 99999986
No 67
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.73 E-value=0.031 Score=56.60 Aligned_cols=36 Identities=31% Similarity=0.363 Sum_probs=32.6
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
.+++++|+|+|++|+.++..|..+|++|++++|+.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~ 201 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINID 201 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 457799999999999999999999999999999753
No 68
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.71 E-value=0.2 Score=48.82 Aligned_cols=124 Identities=19% Similarity=0.288 Sum_probs=76.6
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
...++++|++.....++. +++.+.++.+ .+++..|+-|-.|.-..+- ..++.++|. +.+-..+..- -|
T Consensus 54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 128 (285)
T PRK14189 54 VKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPE-KDVDGFHVAN----AG 128 (285)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcc-cCcccCChhh----hh
Confidence 356789999887666653 3577777777 4577999999999742211 111111111 1111111100 01
Q ss_pred eEE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614 331 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 331 ~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR 399 (403)
+++ | .-.--.|++.-|+.. +.+++||+++|+|.|+. +|.++.-|.+.|+.|+++.+
T Consensus 129 ~l~~~~~~~~PcTp~aii~lL~~~-------------~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs 190 (285)
T PRK14189 129 ALMTGQPLFRPCTPYGVMKMLESI-------------GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHS 190 (285)
T ss_pred HhhCCCCCCcCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecC
Confidence 111 1 112245666666543 36789999999999999 99999999999999888764
No 69
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=94.69 E-value=0.041 Score=51.36 Aligned_cols=35 Identities=31% Similarity=0.513 Sum_probs=32.3
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~ 400 (403)
+++++++|+|+||.|..++..|...|+ +|++++.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 457889999999999999999999999 89999876
No 70
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.68 E-value=0.37 Score=46.80 Aligned_cols=87 Identities=24% Similarity=0.272 Sum_probs=65.3
Q ss_pred EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-------CC---chHHHHHHhcCCCcEEEEeecCCCCCCCCC
Q 015614 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-------QP---GKDLEIILTKKPLPVLIVYRPKWAGGLYEG 82 (403)
Q Consensus 13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-------~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~ 82 (403)
+.++|.+.+.++....++.+.+.|+|+||+-+-+-... ++ .+.++.+++..++|+++-++.. .
T Consensus 101 vi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~-------~ 173 (289)
T cd02810 101 LIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY-------F 173 (289)
T ss_pred EEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC-------C
Confidence 57899999999998888888788999999977653211 11 1345566666689999988853 2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEec
Q 015614 83 DEHKRLEALHLAEDLGADYVDFEL 106 (403)
Q Consensus 83 ~~~~~~~ll~~~~~~g~~yvDiEl 106 (403)
++++-.++.+.+.+.|+|+|.+--
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEc
Confidence 456677888889999999999853
No 71
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=94.55 E-value=4 Score=43.01 Aligned_cols=211 Identities=14% Similarity=0.053 Sum_probs=129.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHH
Q 015614 21 SVEQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALH 92 (403)
Q Consensus 21 ~~~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 92 (403)
+.+|++.-++..-+.|.+.||.- .|- +...++.+.+..+++.. +.|+-.-+|-.+==|....+++-..+.++
T Consensus 25 ~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~ 104 (499)
T PRK12330 25 AMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVE 104 (499)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHH
Confidence 34555555555556799999996 663 12225567788887654 67888888866665665667777778899
Q ss_pred HHHHcCCcEEEEeccccc--hHHHHHHhccC--CCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--CH
Q 015614 93 LAEDLGADYVDFELKVAS--NILGKQYSSHQ--SGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--DI 166 (403)
Q Consensus 93 ~~~~~g~~yvDiEl~~~~--~~~~~l~~~~~--~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~--~~ 166 (403)
.+++.|++.+-|=..+.+ .....+...++ .+...-++|-. +.--+.+.+.++.+++.+.|||.+-|+=|+- ++
T Consensus 105 ~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~-sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P 183 (499)
T PRK12330 105 KSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTV-SPIHTVEGFVEQAKRLLDMGADSICIKDMAALLKP 183 (499)
T ss_pred HHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEec-CCCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCH
Confidence 999999999887544433 22111111222 22323344421 1011457799999999999999998887774 57
Q ss_pred hHHHHHHHHhccC---CCCEEEEE--cCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhhhc
Q 015614 167 TEIARIFQLLSHC---QVPIIAYS--VGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKVE 232 (403)
Q Consensus 167 ~D~~~ll~~~~~~---~~p~i~~~--MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~~~ 232 (403)
.+..++.+.+.+. +.|+-.=+ +--.+..+-+..---|....-+++.. +-.+||++.+++...++..
T Consensus 184 ~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~Glg~~aGn~atE~vv~~L~~~ 255 (499)
T PRK12330 184 QPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESLVEMLEGT 255 (499)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeecccccccccchhHHHHHHHHHhc
Confidence 8888888776543 35543212 12223333333333454444444443 4568999999988777643
No 72
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=94.47 E-value=2.7 Score=39.15 Aligned_cols=116 Identities=17% Similarity=0.264 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCC-CCCCCCHHHHHHHHHHHHHcCCcE
Q 015614 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAG-GLYEGDEHKRLEALHLAEDLGADY 101 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eG-G~~~~~~~~~~~ll~~~~~~g~~y 101 (403)
++...-+..+...|+.++++. + .+.+..+++.+++|+|...|..-.+ -.+-.. ..+.++.+.+.|+++
T Consensus 23 ~~~~~~a~a~~~~G~~~~~~~-------~-~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~---~~~~v~~a~~aGad~ 91 (221)
T PRK01130 23 EIMAAMALAAVQGGAVGIRAN-------G-VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITP---TLKEVDALAAAGADI 91 (221)
T ss_pred HHHHHHHHHHHHCCCeEEEcC-------C-HHHHHHHHHhCCCCEEEEEecCCCCCCceECC---CHHHHHHHHHcCCCE
Confidence 444444555566788888872 1 3578888888899999777622011 012111 223457888899999
Q ss_pred EEEeccc---cc-hHHHHHH-hccC-CCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614 102 VDFELKV---AS-NILGKQY-SSHQ-SGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (403)
Q Consensus 102 vDiEl~~---~~-~~~~~l~-~~~~-~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi 159 (403)
|=+++.. +. +...+++ ..++ .+..++...|+ .+++ .++.+.|+|++.+
T Consensus 92 I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t------~ee~----~~a~~~G~d~i~~ 145 (221)
T PRK01130 92 IALDATLRPRPDGETLAELVKRIKEYPGQLLMADCST------LEEG----LAAQKLGFDFIGT 145 (221)
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCC------HHHH----HHHHHcCCCEEEc
Confidence 8887654 21 2222333 2334 67888887763 3333 4677889999876
No 73
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=94.44 E-value=4.6 Score=38.27 Aligned_cols=198 Identities=18% Similarity=0.133 Sum_probs=117.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCC----C-CCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHHHH
Q 015614 21 SVEQVLSNMYQAKAEGADVVEIRLDCIN----N-FQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLA 94 (403)
Q Consensus 21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~----~-~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~ 94 (403)
+.++.++-++...+.|+|.||+=.=--. . .++.+.+..+++.. +.++.+-.|.. .+.++.+
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~-------------~~~i~~a 83 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR-------------EKGIERA 83 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc-------------hhhHHHH
Confidence 4566666666666789999998543211 0 12234556666544 46665555541 3456778
Q ss_pred HHcCCcEEEEeccccc----------------hHHHHHHhccCCCcEEEEecc-CCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015614 95 EDLGADYVDFELKVAS----------------NILGKQYSSHQSGTRFIVSCN-LDCETPSEEDLGYLVSRMQATGADII 157 (403)
Q Consensus 95 ~~~g~~yvDiEl~~~~----------------~~~~~l~~~~~~~~kiI~S~H-~f~~tp~~~~l~~~~~~~~~~gadiv 157 (403)
.+.|++.|-+=+...+ +..+.+...++.+..+.++.= .+...-+.+++.++++++.++|+|.+
T Consensus 84 ~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i 163 (265)
T cd03174 84 LEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEI 163 (265)
T ss_pred HhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 8889998888766552 122222234556778888873 34311245789999999999999999
Q ss_pred EEEeec--CCHhHHHHHHHHhccC-C-CCEEEEEcCc--cchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614 158 KLVFSV--NDITEIARIFQLLSHC-Q-VPIIAYSVGE--RGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (403)
Q Consensus 158 Kia~~~--~~~~D~~~ll~~~~~~-~-~p~i~~~MG~--~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~ 230 (403)
-++=+. -+++++.++++.+.+. + .|+-.=+=-. +|...-+..-..|....=+++.+ +-..|+++++++...++
T Consensus 164 ~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~ 243 (265)
T cd03174 164 SLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAALE 243 (265)
T ss_pred EechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHHHH
Confidence 887554 3588888888876543 2 3332111111 12222222223344444344433 35689999988876665
Q ss_pred h
Q 015614 231 V 231 (403)
Q Consensus 231 ~ 231 (403)
.
T Consensus 244 ~ 244 (265)
T cd03174 244 G 244 (265)
T ss_pred h
Confidence 3
No 74
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.32 E-value=0.06 Score=51.37 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=32.0
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~ 400 (403)
+++++|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 457899999999999999999999999 99999865
No 75
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=94.30 E-value=4.9 Score=38.68 Aligned_cols=86 Identities=15% Similarity=0.153 Sum_probs=55.7
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---------------------chHHHHHH-hcCCCcE-E
Q 015614 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---------------------GKDLEIIL-TKKPLPV-L 68 (403)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---------------------~~~l~~l~-~~~~~Pi-I 68 (403)
+.-++.-.|+.+...+.+....+.|+|++||-+-+-.+.-+ -+.++.+| +..++|+ +
T Consensus 15 i~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vl 94 (258)
T PRK13111 15 IPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVL 94 (258)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 34567788899999888888888999999999887654421 13445566 3457894 4
Q ss_pred EEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015614 69 IVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDF 104 (403)
Q Consensus 69 ~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDi 104 (403)
.|+-+.- +... .-++++.+.+.|++-+=|
T Consensus 95 m~Y~N~i----~~~G---~e~f~~~~~~aGvdGvii 123 (258)
T PRK13111 95 MTYYNPI----FQYG---VERFAADAAEAGVDGLII 123 (258)
T ss_pred EecccHH----hhcC---HHHHHHHHHHcCCcEEEE
Confidence 5544320 1111 124677888888776644
No 76
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=94.29 E-value=1.4 Score=40.12 Aligned_cols=106 Identities=24% Similarity=0.208 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHH---hcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015614 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~ 99 (403)
++....++.+.+.|+++|.+|.--+.+.+..+.+..++ +..+.|+++.- + .+.+.+.|+
T Consensus 13 ~~~~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~---------------~---~~la~~~g~ 74 (196)
T TIGR00693 13 ADLLNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIVND---------------R---VDLALALGA 74 (196)
T ss_pred ccHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEEEEC---------------H---HHHHHHcCC
Confidence 34666677788899999999964333211111223333 34578888852 1 245667788
Q ss_pred cEEEEecccc-chHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614 100 DYVDFELKVA-SNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (403)
Q Consensus 100 ~yvDiEl~~~-~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi 159 (403)
+.|=+..... ....+. ....+..|-+|.|+. +++ .++.+.|+|++++
T Consensus 75 ~GvHl~~~~~~~~~~r~---~~~~~~~ig~s~h~~------~e~----~~a~~~g~dyi~~ 122 (196)
T TIGR00693 75 DGVHLGQDDLPASEARA---LLGPDKIIGVSTHNL------EEL----AEAEAEGADYIGF 122 (196)
T ss_pred CEEecCcccCCHHHHHH---hcCCCCEEEEeCCCH------HHH----HHHhHcCCCEEEE
Confidence 8776643322 222222 223566888999962 333 3466689999997
No 77
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.28 E-value=0.087 Score=54.11 Aligned_cols=40 Identities=33% Similarity=0.533 Sum_probs=35.8
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFGT 403 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~k 403 (403)
..+.|++++|+|+|..|+.++..++..|++|+++++++.|
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R 237 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPIC 237 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhh
Confidence 4567999999999999999999999999999999887653
No 78
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.21 E-value=0.094 Score=47.36 Aligned_cols=38 Identities=34% Similarity=0.437 Sum_probs=34.0
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
..+.|+++.|+|.|..|++++..|+..|++|+.++|+.
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~ 69 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSP 69 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSC
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccC
Confidence 56789999999999999999999999999999999975
No 79
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.08 E-value=0.069 Score=51.70 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=32.1
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~ 400 (403)
+++.+|+|+|+||+|..++.+|++.|+ +|+|++.+
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 567899999999999999999999998 99999865
No 80
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.07 E-value=0.46 Score=46.21 Aligned_cols=124 Identities=17% Similarity=0.221 Sum_probs=74.8
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
...++++|++.....++. +++.+.++.+ .+++..|.-|-+|+...+- ..++.++|. +.+-..+..- -|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~-KDVDGl~~~n----~g 128 (278)
T PRK14172 54 EKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDAN-KDIDCLTFIS----VG 128 (278)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc-cccCccCHhh----HH
Confidence 356889999988777763 3566666666 4567999999999742211 111111110 1111111000 01
Q ss_pred eE-EE----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614 331 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 331 ~l-~G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR 399 (403)
++ .| .-.--.|++.-|+.. +.+++||+++|+|-+.. +|.++.-|.+.|+.|+++.+
T Consensus 129 ~l~~g~~~~~PcTp~av~~lL~~~-------------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs 190 (278)
T PRK14172 129 KFYKGEKCFLPCTPNSVITLIKSL-------------NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHS 190 (278)
T ss_pred HHhCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCC
Confidence 11 11 112334666665543 35789999999997665 99999999999999999864
No 81
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=94.06 E-value=8.7 Score=40.02 Aligned_cols=206 Identities=15% Similarity=0.143 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCCchHHHHHHhc-CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHH
Q 015614 23 EQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLA 94 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~ 94 (403)
++.+.-++...+.|.+.||.- .|. +...++.+.+..+++. .+.++..-.|..+--|..+.+++-..+.++.+
T Consensus 26 ~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A 105 (448)
T PRK12331 26 EEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKS 105 (448)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHHH
Confidence 444444444455699999994 552 2222455677777765 35666666887767676666777777889999
Q ss_pred HHcCCcEEEEeccccc--hHHHHHHhccCCCcEE--EEeccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--CH
Q 015614 95 EDLGADYVDFELKVAS--NILGKQYSSHQSGTRF--IVSCNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--DI 166 (403)
Q Consensus 95 ~~~g~~yvDiEl~~~~--~~~~~l~~~~~~~~ki--I~S~H~f~~tp--~~~~l~~~~~~~~~~gadivKia~~~~--~~ 166 (403)
++.|++.+-|=....+ +..+.+...+..+..+ -+||-+ .| +.+.+.++.+++.+.|+|.+-|+=|.- ++
T Consensus 106 ~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~---~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P 182 (448)
T PRK12331 106 VENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTT---SPVHTIDYFVKLAKEMQEMGADSICIKDMAGILTP 182 (448)
T ss_pred HHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeec---CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCH
Confidence 9999999888665543 2222222233334443 345443 23 457789999999999999998887765 57
Q ss_pred hHHHHHHHHhcc-CCCCEEEE--EcCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhhh
Q 015614 167 TEIARIFQLLSH-CQVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV 231 (403)
Q Consensus 167 ~D~~~ll~~~~~-~~~p~i~~--~MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~~ 231 (403)
.++.++.+.+.+ .+.|+-.= +.--.|..+-+..-..|....-+++.. +.-.||++.+++...++.
T Consensus 183 ~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg~gaGN~~tE~lv~~L~~ 251 (448)
T PRK12331 183 YVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFAGGTSQPATESMVAALQD 251 (448)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccccCCCcCCHhHHHHHHHHHh
Confidence 888888877653 35554321 122233334443333454444444432 123799999998877754
No 82
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.04 E-value=0.2 Score=48.71 Aligned_cols=123 Identities=13% Similarity=0.200 Sum_probs=76.3
Q ss_pred HHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCCe
Q 015614 259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDGK 331 (403)
Q Consensus 259 ~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g~ 331 (403)
..++++|++.....++. +++.+.++.+ .++...|+-|-+|+...+- ..++.++|. +.+-..+-.- -|+
T Consensus 54 k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g~ 128 (282)
T PRK14180 54 KACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE-KDVDGFHPTN----VGR 128 (282)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCcc-ccccccChhh----HHH
Confidence 46789999887666654 3566777777 4577999999999752221 122222221 1111111100 011
Q ss_pred E-EE-----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614 332 L-IG-----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 332 l-~G-----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR 399 (403)
+ .| .-.--.|++.-|+.. +.+++||+++|+|.+.. +|.++.-|.+.|+.|+++.+
T Consensus 129 l~~g~~~~~~PcTp~aii~lL~~y-------------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs 190 (282)
T PRK14180 129 LQLRDKKCLESCTPKGIMTMLREY-------------GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHR 190 (282)
T ss_pred HhcCCCCCcCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcC
Confidence 1 12 122345666666543 25788999999997766 99999999999999988865
No 83
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.00 E-value=0.26 Score=48.10 Aligned_cols=123 Identities=15% Similarity=0.230 Sum_probs=75.3
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
...++++|++.....++. +++.+.++.+ .++.+.|+-|-+|+...+ ...++.++|. +.+-..+..- -|
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 127 (285)
T PRK14191 53 IKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPN-KDVDGFHPLN----IG 127 (285)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc-ccccccChhh----HH
Confidence 356789999887666653 3577777777 457899999999974211 1111112211 1111111100 01
Q ss_pred eE-EE----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcch-hHHHHHHHHHHHCCCeEEEEe
Q 015614 331 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFD 398 (403)
Q Consensus 331 ~l-~G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaG-Gaarai~~al~~~g~~i~v~n 398 (403)
++ .| .-.--.|++.-|+.. +.+++||+++|+|.| -+++.++.-|.+.|+.|+++.
T Consensus 128 ~l~~g~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~h 188 (285)
T PRK14191 128 KLCSQLDGFVPATPMGVMRLLKHY-------------HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCH 188 (285)
T ss_pred HHhcCCCCCCCCcHHHHHHHHHHh-------------CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEe
Confidence 11 11 113345666666543 357889999999988 679999999999999888875
No 84
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=93.94 E-value=3.1 Score=38.72 Aligned_cols=117 Identities=16% Similarity=0.197 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 015614 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV 102 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yv 102 (403)
.+...-.+.+...|+.++|+ + ..+.++.+++..++|++.-+|..-++...-.+ .+.+.++.+.+.|+++|
T Consensus 27 ~~i~~~a~~~~~~G~~~~~~--~------~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig--~~~~~~~~a~~aGad~I 96 (219)
T cd04729 27 EIMAAMALAAVQGGAVGIRA--N------GVEDIRAIRARVDLPIIGLIKRDYPDSEVYIT--PTIEEVDALAAAGADII 96 (219)
T ss_pred HHHHHHHHHHHHCCCeEEEc--C------CHHHHHHHHHhCCCCEEEEEecCCCCCCceeC--CCHHHHHHHHHcCCCEE
Confidence 34455556667789999885 2 12467777777899998766643222111011 13456688899999998
Q ss_pred EEeccc---cc-hHHHHHH-hccCC-CcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614 103 DFELKV---AS-NILGKQY-SSHQS-GTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (403)
Q Consensus 103 DiEl~~---~~-~~~~~l~-~~~~~-~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi 159 (403)
=++... +. +...++. ..++. ...++...|+ .++. .++.+.|+|++++
T Consensus 97 ~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t------~~ea----~~a~~~G~d~i~~ 149 (219)
T cd04729 97 ALDATDRPRPDGETLAELIKRIHEEYNCLLMADIST------LEEA----LNAAKLGFDIIGT 149 (219)
T ss_pred EEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCC------HHHH----HHHHHcCCCEEEc
Confidence 776543 22 1222232 22222 3667776552 2333 5566789999875
No 85
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=93.94 E-value=4.2 Score=35.87 Aligned_cols=125 Identities=16% Similarity=0.101 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCCc----hHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015614 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPG----KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG 98 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~----~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g 98 (403)
+.....++.+.+.|+|+++++.......... +.+..+++..+.|+++.+..... .+......+.+.+.|
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~g 84 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDA-------AAAVDIAAAAARAAG 84 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCc-------hhhhhHHHHHHHHcC
Confidence 4445555566677899999998765543221 13566666678999988764321 111111135667789
Q ss_pred CcEEEEecccc------chHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015614 99 ADYVDFELKVA------SNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV 163 (403)
Q Consensus 99 ~~yvDiEl~~~------~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~ 163 (403)
+++|.+-.... .+.++.++... ++..++...|...... .. .+.+.|+|.+.+....
T Consensus 85 ~d~v~l~~~~~~~~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~---~~-----~~~~~g~d~i~~~~~~ 146 (200)
T cd04722 85 ADGVEIHGAVGYLAREDLELIRELREAV-PDVKVVVKLSPTGELA---AA-----AAEEAGVDEVGLGNGG 146 (200)
T ss_pred CCEEEEeccCCcHHHHHHHHHHHHHHhc-CCceEEEEECCCCccc---hh-----hHHHcCCCEEEEcCCc
Confidence 99998877763 33444444221 3678888887532111 11 1567799999876543
No 86
>PRK07340 ornithine cyclodeaminase; Validated
Probab=93.84 E-value=0.063 Score=52.89 Aligned_cols=37 Identities=19% Similarity=0.098 Sum_probs=32.2
Q ss_pred CCCeEEEEcchhHHHHHHHHHHH-CCC-eEEEEecCCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFGT 403 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~-~g~-~i~v~nR~~~k 403 (403)
..++++|+|+|+.|++.+.++.. .+. +|+|+||+++|
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~ 162 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAAS 162 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHH
Confidence 45799999999999999999975 577 89999998653
No 87
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.82 E-value=0.079 Score=53.39 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=32.2
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~ 400 (403)
+++++|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 456899999999999999999999999 99999876
No 88
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.76 E-value=0.11 Score=39.23 Aligned_cols=29 Identities=34% Similarity=0.485 Sum_probs=26.1
Q ss_pred EEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 373 LAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 373 ilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
|+|+|-++.++++.|.+.|.+|+|+.|+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 79999999999999999999999999864
No 89
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.76 E-value=0.15 Score=39.54 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=29.8
Q ss_pred eEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 370 ~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
+++|+|+|-.|--++..|+++|.+|+++.|..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence 58999999999999999999999999999864
No 90
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.73 E-value=0.38 Score=46.88 Aligned_cols=124 Identities=16% Similarity=0.248 Sum_probs=76.4
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
...++++|++.....++. +++.+.++.+ .+++..|+-|-+|+...+ ...++.++|. +.+-..+..- -|
T Consensus 55 ~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 129 (284)
T PRK14177 55 VKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALE-KDVDGVTTLS----FG 129 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc-cccccCChhh----HH
Confidence 457889999988766653 3566677777 457899999999975221 1111111111 1111111100 01
Q ss_pred eE-EE----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614 331 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 331 ~l-~G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR 399 (403)
++ .| .-.--.|++.-|+.. +.+++||+++|+|.+.. +|.++.-|.+.|+.|+++..
T Consensus 130 ~l~~g~~~~~PcTp~avi~ll~~y-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs 191 (284)
T PRK14177 130 KLSMGVETYLPCTPYGMVLLLKEY-------------GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHS 191 (284)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence 11 11 122346777766543 35789999999997666 99999999999999999873
No 91
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=93.70 E-value=3.6 Score=40.21 Aligned_cols=121 Identities=18% Similarity=0.170 Sum_probs=77.8
Q ss_pred HHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecccc------------------chHHHHHH
Q 015614 56 LEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVA------------------SNILGKQY 117 (403)
Q Consensus 56 l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~------------------~~~~~~l~ 117 (403)
+..+.+...+|+++..- +| ++.....+..++.++.|+.-|-||-... ++..+.+.
T Consensus 70 ~~~I~~a~~~Pv~~D~d----~G---g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~ 142 (285)
T TIGR02320 70 VEFMFDVTTKPIILDGD----TG---GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIR 142 (285)
T ss_pred HHHHHhhcCCCEEEecC----CC---CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHH
Confidence 33444567999999854 44 3566677788999999999999976431 12233343
Q ss_pred ---hcc-CCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhcc--CCCCEE
Q 015614 118 ---SSH-QSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH--CQVPII 184 (403)
Q Consensus 118 ---~~~-~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~--~~~p~i 184 (403)
..+ .... +|...-| +...-..++..++.+...+.|||.+=+-....+.++..++.+.... .+.|++
T Consensus 143 Aa~~a~~~~~~-~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~ 215 (285)
T TIGR02320 143 AGKDAQTTEDF-MIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLV 215 (285)
T ss_pred HHHHhccCCCe-EEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEE
Confidence 221 2223 3333322 2112246888888999999999999876556788888888776543 245764
No 92
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=93.67 E-value=3.3 Score=36.99 Aligned_cols=93 Identities=13% Similarity=0.181 Sum_probs=64.1
Q ss_pred CeeEEEecccCC----HHHHHHHHHHHHhcCCCEEEEEecCCCCCC--C---chHHHHHHhc--CCCcEEEEeecCCCCC
Q 015614 10 TTMICAPLMAQS----VEQVLSNMYQAKAEGADVVEIRLDCINNFQ--P---GKDLEIILTK--KPLPVLIVYRPKWAGG 78 (403)
Q Consensus 10 ~~~icv~l~~~~----~~e~~~~~~~~~~~~~D~vElRlD~l~~~~--~---~~~l~~l~~~--~~~PiI~T~R~~~eGG 78 (403)
+..+.+-+...+ .++...+++.+.+.|+|++.+-..+....+ . .+.++.+++. .++|+++..++...
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-- 125 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL-- 125 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC--
Confidence 455567777777 899999999999999999999877653322 1 2344455555 48999999886533
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEecc
Q 015614 79 LYEGDEHKRLEALHLAEDLGADYVDFELK 107 (403)
Q Consensus 79 ~~~~~~~~~~~ll~~~~~~g~~yvDiEl~ 107 (403)
.+.+.-.++.+.+...|+++|..-..
T Consensus 126 ---~~~~~~~~~~~~~~~~g~~~iK~~~~ 151 (201)
T cd00945 126 ---KTADEIAKAARIAAEAGADFIKTSTG 151 (201)
T ss_pred ---CCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 34445555555556678999876554
No 93
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.64 E-value=0.47 Score=46.23 Aligned_cols=125 Identities=17% Similarity=0.230 Sum_probs=77.2
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
...++++|++.....++. +++...++.+ .++.+.|+-|-.|+...+- ..++.++|. +.+-..+..- -|
T Consensus 52 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~-KDVDGl~~~N----~g 126 (282)
T PRK14169 52 QRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPD-KDVDGFSPVS----VG 126 (282)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc-cCcccCChhh----hH
Confidence 456889999987766654 2566667666 4578999999999753221 122222221 1111111100 01
Q ss_pred eEE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEe-cC
Q 015614 331 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFD-ID 400 (403)
Q Consensus 331 ~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~n-R~ 400 (403)
+++ | .-.--.|++.-|+.. +.+++||+++|+|.+.. +|.++.-|...|+.|+++. ||
T Consensus 127 ~l~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T 190 (282)
T PRK14169 127 RLWANEPTVVASTPYGIMALLDAY-------------DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT 190 (282)
T ss_pred HHhcCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC
Confidence 111 0 122345666666543 35789999999997666 9999999999999999985 44
No 94
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.63 E-value=0.54 Score=45.76 Aligned_cols=124 Identities=18% Similarity=0.254 Sum_probs=74.9
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
....+++|++..-..++. +++.+.++.+ .++...|+-|-.|....+- ..++.++|. +.+-..+-.- -|
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 127 (281)
T PRK14183 53 AKACDRVGIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPK-KDVDGFHPYN----VG 127 (281)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCch-hcccccChhh----hh
Confidence 356789999876555533 3566667767 4678999999999752211 112222221 1111111100 01
Q ss_pred eE-EE----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcch-hHHHHHHHHHHHCCCeEEEEec
Q 015614 331 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 331 ~l-~G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaG-Gaarai~~al~~~g~~i~v~nR 399 (403)
++ .| .-.--.|++.-|++. +.+++||+++|+|.| -.++.++.-|.+.|+.|+++..
T Consensus 128 ~l~~g~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs 189 (281)
T PRK14183 128 RLVTGLDGFVPCTPLGVMELLEEY-------------EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHI 189 (281)
T ss_pred HHhcCCCCCCCCcHHHHHHHHHHc-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence 11 11 111255676666543 367899999999987 5599999999999998888763
No 95
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=93.62 E-value=0.34 Score=47.50 Aligned_cols=83 Identities=18% Similarity=0.269 Sum_probs=59.0
Q ss_pred EEEecccCCHHHHHHHHHHHHhcC-CCEEEEEecC----------CCCCC-CchHHHHHHhcCCCcEEEEeecCCCCCCC
Q 015614 13 ICAPLMAQSVEQVLSNMYQAKAEG-ADVVEIRLDC----------INNFQ-PGKDLEIILTKKPLPVLIVYRPKWAGGLY 80 (403)
Q Consensus 13 icv~l~~~~~~e~~~~~~~~~~~~-~D~vElRlD~----------l~~~~-~~~~l~~l~~~~~~PiI~T~R~~~eGG~~ 80 (403)
+.++|.+.+.+++..-++.+.+.| +|.|||-+=+ ..+.+ ..+.++.+++..++|+.+-++..
T Consensus 94 ~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~------ 167 (301)
T PRK07259 94 IIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPN------ 167 (301)
T ss_pred EEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCC------
Confidence 568999999999998888887888 9999995522 11111 02344556666689999887741
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEE
Q 015614 81 EGDEHKRLEALHLAEDLGADYVDF 104 (403)
Q Consensus 81 ~~~~~~~~~ll~~~~~~g~~yvDi 104 (403)
.++-.++.+.+.+.|+++|++
T Consensus 168 ---~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 168 ---VTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred ---chhHHHHHHHHHHcCCCEEEE
Confidence 235567778888899999876
No 96
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.59 E-value=0.11 Score=53.18 Aligned_cols=39 Identities=36% Similarity=0.577 Sum_probs=35.2
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
..+.|++++|+|.|..|+.++..++.+|++|+++++++.
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 346799999999999999999999999999999988764
No 97
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=93.59 E-value=0.098 Score=47.35 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
.+++|+++|+|+|-+|--+++.|.+.|.+|+++-|++.
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 46789999999999999999999999989999999874
No 98
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=93.56 E-value=6 Score=36.44 Aligned_cols=143 Identities=14% Similarity=0.100 Sum_probs=86.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcC-CC-cEEEEeecCCCCCCCCCCHHHHHHHHHHHHH
Q 015614 19 AQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PL-PVLIVYRPKWAGGLYEGDEHKRLEALHLAED 96 (403)
Q Consensus 19 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~-PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~ 96 (403)
..+.+++.+.++++.+.++|.+=+.- ..+...++.. +. ..+-+.-.-+.|. ...+.+..-.+.+++
T Consensus 13 ~~t~~~i~~~~~~a~~~~~~av~v~p---------~~v~~~~~~l~~~~~~v~~~~~fp~g~---~~~~~k~~eve~A~~ 80 (203)
T cd00959 13 DATEEDIRKLCDEAKEYGFAAVCVNP---------CFVPLAREALKGSGVKVCTVIGFPLGA---TTTEVKVAEAREAIA 80 (203)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcH---------HHHHHHHHHcCCCCcEEEEEEecCCCC---CcHHHHHHHHHHHHH
Confidence 44678888888888777899987642 1333333322 22 3333333333333 234556666789999
Q ss_pred cCCcEEEEecccc-------chHHH---HHHh-ccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE--ee-
Q 015614 97 LGADYVDFELKVA-------SNILG---KQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV--FS- 162 (403)
Q Consensus 97 ~g~~yvDiEl~~~-------~~~~~---~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia--~~- 162 (403)
.|++-||+=++.. +...+ ++.. .+.-..|+|+-.-.. +.+++....+.+.+.|||++|.- ..
T Consensus 81 ~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l----~~~~i~~a~ria~e~GaD~IKTsTG~~~ 156 (203)
T cd00959 81 DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLL----TDEEIIKACEIAIEAGADFIKTSTGFGP 156 (203)
T ss_pred cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC----CHHHHHHHHHHHHHhCCCEEEcCCCCCC
Confidence 9999999966543 11222 3332 222335555554322 35678888888999999999987 43
Q ss_pred -cCCHhHHHHHHHHhc
Q 015614 163 -VNDITEIARIFQLLS 177 (403)
Q Consensus 163 -~~~~~D~~~ll~~~~ 177 (403)
..+++|+..+.+...
T Consensus 157 ~~at~~~v~~~~~~~~ 172 (203)
T cd00959 157 GGATVEDVKLMKEAVG 172 (203)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 345777766666644
No 99
>PRK08618 ornithine cyclodeaminase; Validated
Probab=93.55 E-value=0.067 Score=53.16 Aligned_cols=37 Identities=22% Similarity=0.406 Sum_probs=31.5
Q ss_pred CCCeEEEEcchhHHHHHHHHHH-HCCC-eEEEEecCCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAK-SRGA-RVVIFDIDFGT 403 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~-~~g~-~i~v~nR~~~k 403 (403)
..++++|+|+|+.|++.+.++. ..++ +|+|+||+++|
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~ 164 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEK 164 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHH
Confidence 3578999999999999998876 4578 89999998754
No 100
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.53 E-value=0.092 Score=53.21 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=32.1
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~ 400 (403)
+++++|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 446789999999999999999999999 99999876
No 101
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=93.50 E-value=2.9 Score=41.51 Aligned_cols=150 Identities=13% Similarity=0.211 Sum_probs=88.9
Q ss_pred EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC----C--------CC---chHHHHHHhcCCCcEEEEeecCCCC
Q 015614 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN----F--------QP---GKDLEIILTKKPLPVLIVYRPKWAG 77 (403)
Q Consensus 13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~----~--------~~---~~~l~~l~~~~~~PiI~T~R~~~eG 77 (403)
+.+.|.+.+.+++..-++.+.+.|+|.|||-+-+=.. . ++ .+.+..+++..+.|+.+-+|.
T Consensus 67 ~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~---- 142 (321)
T PRK10415 67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRT---- 142 (321)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEc----
Confidence 4589999999999877776667899999998776310 0 11 133445555668898888883
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015614 78 GLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII 157 (403)
Q Consensus 78 G~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadiv 157 (403)
| |..+.+...++.+.+.+.|+++|.+.-.... . .+.++++++.+.++.+. .++.
T Consensus 143 G-~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~-----------~---------~~~G~a~~~~i~~ik~~-----~~iP 196 (321)
T PRK10415 143 G-WAPEHRNCVEIAQLAEDCGIQALTIHGRTRA-----------C---------LFNGEAEYDSIRAVKQK-----VSIP 196 (321)
T ss_pred c-ccCCcchHHHHHHHHHHhCCCEEEEecCccc-----------c---------ccCCCcChHHHHHHHHh-----cCCc
Confidence 3 2233445678888888999999987532210 0 01233444333333221 1332
Q ss_pred EEEee-cCCHhHHHHHHHHhccCCCCEEEEEcCccchhh
Q 015614 158 KLVFS-VNDITEIARIFQLLSHCQVPIIAYSVGERGLVS 195 (403)
Q Consensus 158 Kia~~-~~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~S 195 (403)
=++.= ..|.+|..++++. .+...+.++.|..+.+.
T Consensus 197 VI~nGgI~s~~da~~~l~~---~gadgVmiGR~~l~nP~ 232 (321)
T PRK10415 197 VIANGDITDPLKARAVLDY---TGADALMIGRAAQGRPW 232 (321)
T ss_pred EEEeCCCCCHHHHHHHHhc---cCCCEEEEChHhhcCCh
Confidence 22211 1366777666644 34567777777766443
No 102
>PRK06153 hypothetical protein; Provisional
Probab=93.49 E-value=0.074 Score=53.84 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=31.1
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~ 400 (403)
++++|+|+|+||+|..++..|++.|+ +|++++-+
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 46789999999999999999999999 99998754
No 103
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=93.48 E-value=0.24 Score=51.66 Aligned_cols=39 Identities=36% Similarity=0.508 Sum_probs=35.7
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
..+.||+++|+|.|..||+++..|...|++|+++++++.
T Consensus 250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~ 288 (476)
T PTZ00075 250 VMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPI 288 (476)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 567899999999999999999999999999999988753
No 104
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=93.41 E-value=5.3 Score=38.57 Aligned_cols=127 Identities=16% Similarity=0.187 Sum_probs=77.6
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCc---------------------hHHHHHHhcCCCc-EEE
Q 015614 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---------------------KDLEIILTKKPLP-VLI 69 (403)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~---------------------~~l~~l~~~~~~P-iI~ 69 (403)
+--++.-.|+.+.....+....+.|||++||-+-+-++.-+. +.++.+|+..+.| ++.
T Consensus 18 i~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm 97 (263)
T CHL00200 18 IPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIF 97 (263)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEE
Confidence 344677788999988888888889999999998876654221 3344555455677 444
Q ss_pred EeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHH
Q 015614 70 VYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRM 149 (403)
Q Consensus 70 T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~ 149 (403)
|+-+.- +.... -++++.+.+.|++.| |+ ||. | .+|..+.++.+
T Consensus 98 ~Y~N~i----~~~G~---e~F~~~~~~aGvdgv------------------------ii--pDL---P-~ee~~~~~~~~ 140 (263)
T CHL00200 98 TYYNPV----LHYGI---NKFIKKISQAGVKGL------------------------II--PDL---P-YEESDYLISVC 140 (263)
T ss_pred ecccHH----HHhCH---HHHHHHHHHcCCeEE------------------------Ee--cCC---C-HHHHHHHHHHH
Confidence 443210 01011 224455555555442 22 331 2 36777788888
Q ss_pred HHcCCCEEEEEeecCCHhHHHHHHHH
Q 015614 150 QATGADIIKLVFSVNDITEIARIFQL 175 (403)
Q Consensus 150 ~~~gadivKia~~~~~~~D~~~ll~~ 175 (403)
++.|-+.+=++....+.+....+.+.
T Consensus 141 ~~~gi~~I~lv~PtT~~eri~~i~~~ 166 (263)
T CHL00200 141 NLYNIELILLIAPTSSKSRIQKIARA 166 (263)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHHh
Confidence 88888888777666656666555554
No 105
>PRK08223 hypothetical protein; Validated
Probab=93.41 E-value=0.092 Score=51.24 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=32.0
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~ 400 (403)
+++.+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 456889999999999999999999999 99999865
No 106
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=93.34 E-value=1.2 Score=43.26 Aligned_cols=137 Identities=18% Similarity=0.237 Sum_probs=86.8
Q ss_pred eeeccCCcccCCHHHHHHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccch-----HHHHcccccCC
Q 015614 242 GLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYK-----EAVMKFCDEVH 311 (403)
Q Consensus 242 ~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K-----~~v~~~~d~~~ 311 (403)
-++|+.-+....=.+-....+++|+...+..++. +++.+.+..+ .++.+.|.-|-.|.= +.++..++--
T Consensus 36 ilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~- 114 (283)
T COG0190 36 ILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPE- 114 (283)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcC-
Confidence 3556544333333355678899999988777653 3566667666 568899999999963 2333222110
Q ss_pred HHHhhccceeEEEEeccCCeEE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHH
Q 015614 312 PLAQAIAAVNTIIRRPSDGKLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAF 385 (403)
Q Consensus 312 ~~A~~igavNTi~~~~~~g~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~ 385 (403)
..+.-+.-.|. |++. + .-.--.|++.-|++. +.++.|++++|+|.+.. ||.++.
T Consensus 115 KDVDG~hp~N~-------g~L~~~~~~~~PCTp~gi~~ll~~~-------------~i~l~Gk~~vVVGrS~iVGkPla~ 174 (283)
T COG0190 115 KDVDGFHPYNL-------GKLAQGEPGFLPCTPAGIMTLLEEY-------------GIDLRGKNVVVVGRSNIVGKPLAL 174 (283)
T ss_pred CCccccChhHh-------cchhcCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcCcHHHHH
Confidence 00000001111 2332 1 123356888887764 25788999999998776 999999
Q ss_pred HHHHCCCeEEEEec
Q 015614 386 GAKSRGARVVIFDI 399 (403)
Q Consensus 386 al~~~g~~i~v~nR 399 (403)
-|...++.|+|++.
T Consensus 175 lL~~~naTVtvcHs 188 (283)
T COG0190 175 LLLNANATVTVCHS 188 (283)
T ss_pred HHHhCCCEEEEEcC
Confidence 99999999999875
No 107
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.30 E-value=0.47 Score=46.23 Aligned_cols=124 Identities=17% Similarity=0.250 Sum_probs=76.5
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
..+++++|++.....++. +++.+.++.+ .++.+.|+-|-.|....+- ..++.++|. +.+-..+..- -|
T Consensus 52 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 126 (282)
T PRK14182 52 RKDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPA-KDADGFHPFN----VG 126 (282)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcCCCCHhH----HH
Confidence 356789999987766653 3566777767 4578999999999752211 111111111 1111111100 01
Q ss_pred eEE-E-----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614 331 KLI-G-----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 331 ~l~-G-----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR 399 (403)
+++ | .-.--.|++.-|+.. +.+++||+++|+|-+.. +|.++.-|.+.|+.|+++..
T Consensus 127 ~l~~g~~~~~~PcTp~avi~ll~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs 189 (282)
T PRK14182 127 ALSIGIAGVPRPCTPAGVMRMLDEA-------------RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHS 189 (282)
T ss_pred HHhCCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence 111 1 112256777776553 25788999999997766 99999999999999988874
No 108
>PLN02494 adenosylhomocysteinase
Probab=93.25 E-value=0.14 Score=53.15 Aligned_cols=39 Identities=36% Similarity=0.551 Sum_probs=35.4
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
..+.|++++|+|.|..|++++..+..+|++|.++++++.
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 446799999999999999999999999999999998864
No 109
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.13 E-value=0.51 Score=46.02 Aligned_cols=123 Identities=16% Similarity=0.281 Sum_probs=74.6
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
....+++|++.....++. +++.+.++.+ .++...|.-|-.|.-..+ ...++.++|. +.+-..+-.- -|
T Consensus 54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~-KDVDGl~~~N----~g 128 (284)
T PRK14179 54 ERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPK-KDVDGFHPMN----TG 128 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc-ccccccCHhh----HH
Confidence 357889999987776663 3566666666 457899999999974222 1111111110 1111110000 01
Q ss_pred eEE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEe
Q 015614 331 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFD 398 (403)
Q Consensus 331 ~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~n 398 (403)
+++ | .-.--.|++.-|+.. +.+++||+++|+|. |=+++.++.-|.+.|+.|+++.
T Consensus 129 ~l~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~ 189 (284)
T PRK14179 129 HLWSGRPVMIPCTPAGIMEMFREY-------------NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTH 189 (284)
T ss_pred HHhCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEEC
Confidence 111 0 112335666666543 35789999999998 6669999999999999999884
No 110
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=93.04 E-value=1.8 Score=39.46 Aligned_cols=109 Identities=14% Similarity=0.199 Sum_probs=65.8
Q ss_pred EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecC---CCCCCC-chHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHH
Q 015614 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDC---INNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRL 88 (403)
Q Consensus 13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~---l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~ 88 (403)
|.++|..-|..++...++.+.+.|+|+|++|+=- ...... .+.++.+++..+.|+.+.+-.. +.+.
T Consensus 2 ~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~--------d~~~-- 71 (211)
T cd00429 2 IAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVE--------NPER-- 71 (211)
T ss_pred ceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeC--------CHHH--
Confidence 5678888899888888999989999999998521 121111 2456677765556665444432 1222
Q ss_pred HHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccC
Q 015614 89 EALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNL 132 (403)
Q Consensus 89 ~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~ 132 (403)
.++.+.+.|+++|=+=....+...+.+...++.+.+++++.|.
T Consensus 72 -~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~ 114 (211)
T cd00429 72 -YIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNP 114 (211)
T ss_pred -HHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecC
Confidence 3566678899986443222222222222233457788888863
No 111
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=92.98 E-value=0.68 Score=43.15 Aligned_cols=89 Identities=21% Similarity=0.349 Sum_probs=61.5
Q ss_pred eeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCC---------C---CCC---chHHHHHHhcCCCcEEEEeecCC
Q 015614 11 TMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCIN---------N---FQP---GKDLEIILTKKPLPVLIVYRPKW 75 (403)
Q Consensus 11 ~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~---------~---~~~---~~~l~~l~~~~~~PiI~T~R~~~ 75 (403)
..+.++|.+.+.+++.+.++.+.+.|+|.|||-+-+-. . .++ .+.++.+++....|+.+-+|..+
T Consensus 55 ~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~ 134 (231)
T cd02801 55 RPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGW 134 (231)
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeecc
Confidence 34568999999999999888887779999999765411 0 011 23455566656678887777432
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015614 76 AGGLYEGDEHKRLEALHLAEDLGADYVDFE 105 (403)
Q Consensus 76 eGG~~~~~~~~~~~ll~~~~~~g~~yvDiE 105 (403)
+ . +++-.++++.+.+.|+++|.+-
T Consensus 135 ~-----~-~~~~~~~~~~l~~~Gvd~i~v~ 158 (231)
T cd02801 135 D-----D-EEETLELAKALEDAGASALTVH 158 (231)
T ss_pred C-----C-chHHHHHHHHHHHhCCCEEEEC
Confidence 1 1 1456677788888899998763
No 112
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.97 E-value=1.9 Score=42.09 Aligned_cols=87 Identities=18% Similarity=0.244 Sum_probs=51.2
Q ss_pred CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccc------------hHHHHHHhccCCCcEEEEec
Q 015614 63 KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVAS------------NILGKQYSSHQSGTRFIVSC 130 (403)
Q Consensus 63 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~------------~~~~~l~~~~~~~~kiI~S~ 130 (403)
.+.|+++.++.. +.+++.+..+.+.+.|+|+|+|-+..+. ++..+++...+..+.+-++.
T Consensus 88 ~~~p~ivsi~g~--------~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~v 159 (296)
T cd04740 88 FGTPVIASIAGS--------TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIV 159 (296)
T ss_pred CCCcEEEEEecC--------CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEE
Confidence 478999999832 4577888888888889999999665432 22222321111111222221
Q ss_pred cCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614 131 NLDCETPSEEDLGYLVSRMQATGADIIKLV 160 (403)
Q Consensus 131 H~f~~tp~~~~l~~~~~~~~~~gadivKia 160 (403)
- -+|+.++..++.+.+.+.|+|.+.+.
T Consensus 160 K---l~~~~~~~~~~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 160 K---LTPNVTDIVEIARAAEEAGADGLTLI 186 (296)
T ss_pred E---eCCCchhHHHHHHHHHHcCCCEEEEE
Confidence 1 13444556666777777777776554
No 113
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=92.95 E-value=3 Score=37.28 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhc---CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015614 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK---KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~---~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~ 99 (403)
.++...++.+.+.|++.|++|+--.......+.+..+++. .+.++++. + + ++.+.+.|+
T Consensus 12 ~~~~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~------------~---~---~~~a~~~g~ 73 (196)
T cd00564 12 EDLLEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVPLIIN------------D---R---VDLALAVGA 73 (196)
T ss_pred chHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe------------C---h---HHHHHHcCC
Confidence 3555667777778999999997533321111233334332 35677743 1 1 345678899
Q ss_pred cEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614 100 DYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (403)
Q Consensus 100 ~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi 159 (403)
+.+-++..... ...+...++.+.++-+|.|+ .++ ..++...|+|++.+
T Consensus 74 ~~vh~~~~~~~--~~~~~~~~~~~~~~g~~~~t------~~~----~~~~~~~g~d~i~~ 121 (196)
T cd00564 74 DGVHLGQDDLP--VAEARALLGPDLIIGVSTHS------LEE----ALRAEELGADYVGF 121 (196)
T ss_pred CEEecCcccCC--HHHHHHHcCCCCEEEeeCCC------HHH----HHHHhhcCCCEEEE
Confidence 99887753322 11222233456788888873 233 34556679999976
No 114
>PRK05866 short chain dehydrogenase; Provisional
Probab=92.90 E-value=0.15 Score=49.55 Aligned_cols=38 Identities=37% Similarity=0.427 Sum_probs=33.5
Q ss_pred CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~ 401 (403)
....+++++|.|+ ||.|++++..|.+.|++|++++|+.
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~ 74 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE 74 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3456799999996 9999999999999999999999975
No 115
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=92.89 E-value=0.095 Score=41.84 Aligned_cols=33 Identities=33% Similarity=0.411 Sum_probs=28.8
Q ss_pred eEEEEcchhHHHHHHHHHHHCC---CeEEEE-ecCCC
Q 015614 370 MFVLAGAGGAGRALAFGAKSRG---ARVVIF-DIDFG 402 (403)
Q Consensus 370 ~~lilGaGGaarai~~al~~~g---~~i~v~-nR~~~ 402 (403)
++.|||+|.+|.+++..|.+.| .+|+++ +|+++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~ 37 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPE 37 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHH
Confidence 4788999999999999999999 589865 88865
No 116
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.89 E-value=0.65 Score=45.37 Aligned_cols=123 Identities=17% Similarity=0.309 Sum_probs=74.8
Q ss_pred HHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCCe
Q 015614 259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDGK 331 (403)
Q Consensus 259 ~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g~ 331 (403)
...+++|++.....++. +++.+.++.+ .+++..|+-|-+|.-..+ ...++.++| .+.+-..+..- -|+
T Consensus 52 k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p-~KDVDGl~~~N----~g~ 126 (287)
T PRK14173 52 RQAKALGLRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDP-LKDVDGFHPLN----VGR 126 (287)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc-cccccccChhh----hHH
Confidence 46789999988777753 3567777777 456799999999974211 111111111 01111111110 011
Q ss_pred EE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614 332 LI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 332 l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR 399 (403)
++ | .-.--.|++.-|+.. +.+++||+++|+|.+.. +|.++.-|.+.|+.|+++.+
T Consensus 127 l~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs 187 (287)
T PRK14173 127 LWMGGEALEPCTPAGVVRLLKHY-------------GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHS 187 (287)
T ss_pred HhcCCCCCCCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCC
Confidence 11 1 122345666665542 35789999999997666 99999999999999988764
No 117
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.88 E-value=0.4 Score=46.70 Aligned_cols=123 Identities=17% Similarity=0.254 Sum_probs=75.3
Q ss_pred HHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCCe
Q 015614 259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDGK 331 (403)
Q Consensus 259 ~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g~ 331 (403)
...+++|++.....++. +++.+.++.+ .+++..|+-|-+|....+- ..+..++|. +.+-..+.+- -|+
T Consensus 53 k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~-KDVDGl~~~N----~g~ 127 (282)
T PRK14166 53 KACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS-KDVDGFHPIN----VGY 127 (282)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcccCChhh----hHH
Confidence 45788999987666653 3566666666 4578999999999753221 111111111 1111111110 011
Q ss_pred E-EE-----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614 332 L-IG-----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 332 l-~G-----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR 399 (403)
+ .| .-.--.|++.-|+.. +.++.||+++|+|-+.. +|.++.-|.+.|+.|+++.+
T Consensus 128 l~~g~~~~~~PcTp~avi~lL~~y-------------~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs 189 (282)
T PRK14166 128 LNLGLESGFLPCTPLGVMKLLKAY-------------EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHI 189 (282)
T ss_pred HhcCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence 1 11 112245666666543 25788999999997766 99999999999999998775
No 118
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.74 E-value=0.71 Score=45.00 Aligned_cols=124 Identities=18% Similarity=0.264 Sum_probs=75.3
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
....+++|++.....++. +++.+.++.+ .++...|+-|-.|.-..+- ..++.++|. +.+-..+..- -|
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~-KDVDGl~p~N----~g 127 (284)
T PRK14170 53 QKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYD-KDVDGFHPVN----VG 127 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc-cCcccCChhh----hh
Confidence 356789999887666653 2566667766 4578999999999742211 111111111 1111111100 01
Q ss_pred eE-EE----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614 331 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 331 ~l-~G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR 399 (403)
++ .| .-.--.|++.-|+.. +.++.||+++|+|.+.. +|.++.-|.+.|+.|+++..
T Consensus 128 ~l~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs 189 (284)
T PRK14170 128 NLFIGKDSFVPCTPAGIIELIKST-------------GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHS 189 (284)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence 11 01 112256777766543 35789999999997776 99999999999999888753
No 119
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=92.74 E-value=14 Score=39.86 Aligned_cols=205 Identities=15% Similarity=0.133 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHHH
Q 015614 22 VEQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHL 93 (403)
Q Consensus 22 ~~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~ 93 (403)
.++.+.-++...+.|.+.+|.- .|. +-..++.+.+..+++.. +.++-.-+|..+-=|..+.+++-..+.++.
T Consensus 25 t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~ 104 (592)
T PRK09282 25 TEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEK 104 (592)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHHH
Confidence 3444444555556799999995 553 22224556777777663 678888888766667666677777788999
Q ss_pred HHHcCCcEEEEeccccc--hHHHHHHhccCCCcEEE--EeccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--C
Q 015614 94 AEDLGADYVDFELKVAS--NILGKQYSSHQSGTRFI--VSCNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--D 165 (403)
Q Consensus 94 ~~~~g~~yvDiEl~~~~--~~~~~l~~~~~~~~kiI--~S~H~f~~tp--~~~~l~~~~~~~~~~gadivKia~~~~--~ 165 (403)
+.+.|++.+-|=...++ +..+.+...++.+..+- +||- + .| +.+.+.+..+++.+.|+|.+=|+=|.- +
T Consensus 105 A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t-~--~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~ 181 (592)
T PRK09282 105 AAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYT-T--SPVHTIEKYVELAKELEEMGCDSICIKDMAGLLT 181 (592)
T ss_pred HHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEec-c--CCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCcC
Confidence 99999998877655433 23333332333344443 3332 2 34 567899999999999999988886664 4
Q ss_pred HhHHHHHHHHhcc-CCCCEEEE---EcCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614 166 ITEIARIFQLLSH-CQVPIIAY---SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (403)
Q Consensus 166 ~~D~~~ll~~~~~-~~~p~i~~---~MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~ 230 (403)
+.+...+.+.+.+ .+.|+ .+ +..-.+..+-+..-..|....-+++.. +--.||++++++...++
T Consensus 182 P~~~~~lv~~lk~~~~~pi-~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g~g~~agn~~~e~vv~~L~ 250 (592)
T PRK09282 182 PYAAYELVKALKEEVDLPV-QLHSHCTSGLAPMTYLKAVEAGVDIIDTAISPLAFGTSQPPTESMVAALK 250 (592)
T ss_pred HHHHHHHHHHHHHhCCCeE-EEEEcCCCCcHHHHHHHHHHhCCCEEEeeccccCCCcCCHhHHHHHHHHH
Confidence 7788888777543 24443 22 222333333333333344333333321 11236777777665554
No 120
>PLN02591 tryptophan synthase
Probab=92.71 E-value=9.7 Score=36.50 Aligned_cols=85 Identities=14% Similarity=0.120 Sum_probs=56.1
Q ss_pred EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---------------------chHHHHHHhcCCCc-EEEE
Q 015614 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---------------------GKDLEIILTKKPLP-VLIV 70 (403)
Q Consensus 13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---------------------~~~l~~l~~~~~~P-iI~T 70 (403)
-.++.-.|+.+..++.++...+.|+|++||-+-+-++.-+ .+.++.+|+..+.| ++.|
T Consensus 6 ~yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~ 85 (250)
T PLN02591 6 PYITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFT 85 (250)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEe
Confidence 3466778999999888888788999999999887665422 13445566556789 4555
Q ss_pred eecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015614 71 YRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDF 104 (403)
Q Consensus 71 ~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDi 104 (403)
+-+.- +.. -.-++++.+.+.|++-+=|
T Consensus 86 Y~N~i----~~~---G~~~F~~~~~~aGv~Gvii 112 (250)
T PLN02591 86 YYNPI----LKR---GIDKFMATIKEAGVHGLVV 112 (250)
T ss_pred cccHH----HHh---HHHHHHHHHHHcCCCEEEe
Confidence 54321 111 2234678888888775533
No 121
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=92.68 E-value=3.6 Score=42.49 Aligned_cols=134 Identities=16% Similarity=0.188 Sum_probs=79.5
Q ss_pred CeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCc-EEEEeecCCCCCCCCCCHHHHH
Q 015614 10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLP-VLIVYRPKWAGGLYEGDEHKRL 88 (403)
Q Consensus 10 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~P-iI~T~R~~~eGG~~~~~~~~~~ 88 (403)
+|++++-+-..++++.+..++.+.+.|+|.||.-...... ...+.++.+++....+ ++..+|.-.. | ..
T Consensus 3 ~~~l~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~-~~~~~i~~l~~~~~~~~ii~D~kl~d~-g------~~-- 72 (430)
T PRK07028 3 RPILQVALDLLELDRAVEIAKEAVAGGADWIEAGTPLIKS-EGMNAIRTLRKNFPDHTIVADMKTMDT-G------AI-- 72 (430)
T ss_pred CceEEEEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHH-hhHHHHHHHHHHCCCCEEEEEeeeccc-h------HH--
Confidence 6889999999999999999999888999999973222111 1124566666654444 4556665422 1 12
Q ss_pred HHHHHHHHcCCcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614 89 EALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV 160 (403)
Q Consensus 89 ~ll~~~~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia 160 (403)
.++.+.+.|+++|-+--........+.+ ..++.+.+++.-.. .+++. .+...++.+.|+|++++-
T Consensus 73 -~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~---s~~t~---~e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 73 -EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLI---NVPDP---VKRAVELEELGVDYINVH 138 (430)
T ss_pred -HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEec---CCCCH---HHHHHHHHhcCCCEEEEE
Confidence 4567889999998864322211111122 22234566665211 11111 123466667899999875
No 122
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=92.68 E-value=1.1 Score=42.24 Aligned_cols=141 Identities=17% Similarity=0.128 Sum_probs=82.3
Q ss_pred eeEEEecccCC----HHHH-----HHHHHHHHhcCCCEEEEEecC---CCCCCC--chHHHHHHh---cCCCcEEEEeec
Q 015614 11 TMICAPLMAQS----VEQV-----LSNMYQAKAEGADVVEIRLDC---INNFQP--GKDLEIILT---KKPLPVLIVYRP 73 (403)
Q Consensus 11 ~~icv~l~~~~----~~e~-----~~~~~~~~~~~~D~vElRlD~---l~~~~~--~~~l~~l~~---~~~~PiI~T~R~ 73 (403)
+.+|+.+.++. .+.- ..+++++++.|||.|.+-+++ ...... .+.+.++++ ...+|+|+-.-.
T Consensus 55 ~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l 134 (236)
T PF01791_consen 55 VKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL 134 (236)
T ss_dssp SEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE
T ss_pred cccceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 46777776663 4555 688999999999999999998 332211 133444443 358898887554
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecc-------ccchHHHHHHhc--cCCCcEEEEeccCCCCCCCHhHHHH
Q 015614 74 KWAGGLYEGDEHKRLEALHLAEDLGADYVDFELK-------VASNILGKQYSS--HQSGTRFIVSCNLDCETPSEEDLGY 144 (403)
Q Consensus 74 ~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~-------~~~~~~~~l~~~--~~~~~kiI~S~H~f~~tp~~~~l~~ 144 (403)
..+...-...++.-....+.+.++|+|+|=.+.- .....++++... .+++++|.+| +-++.+++..
T Consensus 135 ~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~s-----GGi~~~~~~~ 209 (236)
T PF01791_consen 135 RGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKAS-----GGIDAEDFLR 209 (236)
T ss_dssp CHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEE-----SSSSHHHHHH
T ss_pred CchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEe-----CCCChHHHHH
Confidence 3221000012233455566778899999998877 222334444421 2367788888 3445566655
Q ss_pred HHHHHH---HcCCCE
Q 015614 145 LVSRMQ---ATGADI 156 (403)
Q Consensus 145 ~~~~~~---~~gadi 156 (403)
.++.+. +.||+.
T Consensus 210 ~l~~a~~~i~aGa~~ 224 (236)
T PF01791_consen 210 TLEDALEFIEAGADR 224 (236)
T ss_dssp SHHHHHHHHHTTHSE
T ss_pred HHHHHHHHHHcCChh
Confidence 555555 778765
No 123
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=92.54 E-value=4.2 Score=38.52 Aligned_cols=132 Identities=16% Similarity=0.183 Sum_probs=82.4
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC-----------C-CC---chHHHHHHhcCCCcEEEEeecCCC
Q 015614 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN-----------F-QP---GKDLEIILTKKPLPVLIVYRPKWA 76 (403)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~-----------~-~~---~~~l~~l~~~~~~PiI~T~R~~~e 76 (403)
.+.+++.+.+.+++..-++.. ..++|.|||=.-|=.+ . ++ .+.++.++ ..+.|+.+-+|...
T Consensus 69 ~vivnv~~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~- 145 (231)
T TIGR00736 69 LVSVNVRFVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMK-ELNKPIFVKIRGNC- 145 (231)
T ss_pred CEEEEEecCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHH-cCCCcEEEEeCCCC-
Confidence 467999999999999877775 5689999998776221 0 11 12233333 45889999999642
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccc------hHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHH
Q 015614 77 GGLYEGDEHKRLEALHLAEDLGADYVDFELKVAS------NILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQ 150 (403)
Q Consensus 77 GG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~------~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~ 150 (403)
+++...++.+.+.+.|+++|-|+-..+. +.++++.... +...||++=- --+.++..++++
T Consensus 146 ------~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~-~~ipIIgNGg----I~s~eda~e~l~--- 211 (231)
T TIGR00736 146 ------IPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEF-NDKIIIGNNS----IDDIESAKEMLK--- 211 (231)
T ss_pred ------CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhc-CCCcEEEECC----cCCHHHHHHHHH---
Confidence 2345667888888999999999754432 1233333211 1255676522 223455555553
Q ss_pred HcCCCEEEEEe
Q 015614 151 ATGADIIKLVF 161 (403)
Q Consensus 151 ~~gadivKia~ 161 (403)
+|||-|=++.
T Consensus 212 -~GAd~VmvgR 221 (231)
T TIGR00736 212 -AGADFVSVAR 221 (231)
T ss_pred -hCCCeEEEcH
Confidence 4888776654
No 124
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.45 E-value=0.18 Score=54.91 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=32.8
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
..+++++|+|+|.+|.++++.|.++|.+|+|+.|..
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 357899999999999999999999999999998753
No 125
>PRK06196 oxidoreductase; Provisional
Probab=92.43 E-value=0.16 Score=49.76 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
.+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.+
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~ 61 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD 61 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 456899999996 88999999999999999999999753
No 126
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.35 E-value=1.2 Score=43.76 Aligned_cols=124 Identities=13% Similarity=0.168 Sum_probs=74.8
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
...++++|++.....++. +++.+.++.+ .++...|+-|-.|+...+- ..++.++|. +.+-..+..- -|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 128 (294)
T PRK14187 54 QRKAEMLGLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPE-KDVDGFHNEN----VG 128 (294)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcccCChhh----HH
Confidence 356789999987666653 3566666666 4568999999999852110 011111110 1111111000 01
Q ss_pred eE-EEE------eccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614 331 KL-IGY------NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 331 ~l-~G~------NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR 399 (403)
++ .|. -.--.|++.-|+.. +.+++||+++|+|.+.. +|.++.-|.+.|+.|+++..
T Consensus 129 ~l~~g~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs 192 (294)
T PRK14187 129 RLFTGQKKNCLIPCTPKGCLYLIKTI-------------TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHS 192 (294)
T ss_pred HHhCCCCCCCccCcCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCC
Confidence 11 111 12345666666543 25789999999997766 99999999999999988864
No 127
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=92.24 E-value=0.2 Score=56.88 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=33.0
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
..+|+|+|||+|.||.++|+.|++.|.+|+|+.|..
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 358999999999999999999999999999998863
No 128
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.24 E-value=0.65 Score=45.61 Aligned_cols=124 Identities=18% Similarity=0.236 Sum_probs=75.5
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
...++++|++.....++. +++.+.++.+ .++...|+-|-+|....+ ...++.++|. +.+-..+..- -|
T Consensus 53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 127 (297)
T PRK14167 53 QRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA-KDVDGFHPEN----VG 127 (297)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc-cCcccCChhh----hH
Confidence 456889999987766654 3566777777 457899999999975322 1122222221 1111111110 01
Q ss_pred eE-EEE----eccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHC----CCeEEEEec
Q 015614 331 KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSR----GARVVIFDI 399 (403)
Q Consensus 331 ~l-~G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~----g~~i~v~nR 399 (403)
++ .|. -.--.|++.-|+.. +.+++||+++|+|.+.. +|.++.-|.+. ++.|+++..
T Consensus 128 ~l~~g~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs 193 (297)
T PRK14167 128 RLVAGDARFKPCTPHGIQKLLAAA-------------GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHS 193 (297)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCC
Confidence 11 111 12345666666543 25789999999997766 99999998877 678888753
No 129
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=92.21 E-value=6.8 Score=36.18 Aligned_cols=135 Identities=14% Similarity=0.071 Sum_probs=86.6
Q ss_pred CeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCC-HHHHH
Q 015614 10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGD-EHKRL 88 (403)
Q Consensus 10 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~-~~~~~ 88 (403)
.|.+|+.+-..|.+++++.++.. ....|+||.-.+++..+.+ +.++.+|+.+ ++++-+.. .+.. ...+
T Consensus 3 ~~~l~~alD~~~~~~~~~~~~~~-~~~~~~vk~g~~l~~~~G~-~~v~~ir~~~--~i~~D~k~------~di~~~~~~- 71 (215)
T PRK13813 3 DSRIILALDVTDRERALKIAEEL-DDYVDAIKVGWPLVLASGL-GIIEELKRYA--PVIADLKV------ADIPNTNRL- 71 (215)
T ss_pred CCCEEEEeCCCCHHHHHHHHHhc-cccCCEEEEcHHHHHhhCH-HHHHHHHhcC--CEEEEeec------cccHHHHHH-
Confidence 46789999999999999988775 4447899999999886654 4677787654 45543332 1111 2222
Q ss_pred HHHHHHHHcCCcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCC-----CHhHHHHHHHHHHHcCCCEEE
Q 015614 89 EALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETP-----SEEDLGYLVSRMQATGADIIK 158 (403)
Q Consensus 89 ~ll~~~~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp-----~~~~l~~~~~~~~~~gadivK 158 (403)
..+.+++.|+|+|-+=.....+.+..+. ..++.+.++.+..+- . ++ -.+.+........+.|++..|
T Consensus 72 -~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~-~-~~~~~~~~~~~~~~v~~m~~e~G~~g~~ 144 (215)
T PRK13813 72 -ICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEM-S-HPGALEFIQPHADKLAKLAQEAGAFGVV 144 (215)
T ss_pred -HHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeC-C-CCCCCCCHHHHHHHHHHHHHHhCCCeEE
Confidence 2367788999999987776444333333 334556777664432 1 22 123455566666778988887
No 130
>PLN02780 ketoreductase/ oxidoreductase
Probab=92.15 E-value=0.14 Score=50.70 Aligned_cols=36 Identities=22% Similarity=0.451 Sum_probs=32.5
Q ss_pred CCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 367 ~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
.|+.++|.|| ||.|++++..|++.|++|.+++|+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~ 88 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPD 88 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHH
Confidence 4789999995 88999999999999999999999864
No 131
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=92.04 E-value=18 Score=37.97 Aligned_cols=209 Identities=13% Similarity=0.106 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEE----EecC---CCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHHH
Q 015614 22 VEQVLSNMYQAKAEGADVVEI----RLDC---INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHL 93 (403)
Q Consensus 22 ~~e~~~~~~~~~~~~~D~vEl----RlD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~ 93 (403)
.++.+.-++...+.|.+.||. ..|. +...++.+.+..+++.. +.++-.-+|..+--|.....++-...+++.
T Consensus 24 t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~~ 103 (467)
T PRK14041 24 TEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVKK 103 (467)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHHH
Confidence 344444455555679999999 3442 11223456777777653 566666678766666544455555567889
Q ss_pred HHHcCCcEEEEeccccc--hHHHHHHhccCCCcEEEEeccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--CHh
Q 015614 94 AEDLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVSCNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--DIT 167 (403)
Q Consensus 94 ~~~~g~~yvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~f~~tp--~~~~l~~~~~~~~~~gadivKia~~~~--~~~ 167 (403)
+++.|++.+-+=....+ +..+.+...++.+..+.+.... ...| +.+.+.++.+++.+.|||.+-|+=|.- ++.
T Consensus 104 A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~-t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~ 182 (467)
T PRK14041 104 VAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISY-TVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLLTPK 182 (467)
T ss_pred HHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEe-ccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHH
Confidence 99999999888655543 2222222233344455433332 1124 457799999999999999988887664 578
Q ss_pred HHHHHHHHhcc-CCCCEEEE--EcCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhhh
Q 015614 168 EIARIFQLLSH-CQVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV 231 (403)
Q Consensus 168 D~~~ll~~~~~-~~~p~i~~--~MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~~ 231 (403)
++.++.+.+.+ .+.|+-.= +.--.|..+-+..-..|....-+++.. +.-.||++.+++...++.
T Consensus 183 ~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~g~gagN~atE~lv~~L~~ 250 (467)
T PRK14041 183 RAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPFSMGTSQPPFESMYYAFRE 250 (467)
T ss_pred HHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccccCCCCCChhHHHHHHHHHh
Confidence 88888777643 35554211 122223333333333344443344332 122479999998877653
No 132
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.02 E-value=1.3 Score=43.23 Aligned_cols=123 Identities=18% Similarity=0.282 Sum_probs=74.7
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
...++++|++.....++. +++.+.++.+ .++...|+-|-+|+...+- ..++.++|. +.+-..+-. + -|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~-KDVDGl~~~-N---~g 128 (288)
T PRK14171 54 IKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPS-KDIDGFHPL-N---VG 128 (288)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cccccCCcc-c---hh
Confidence 456889999887666653 3566666666 4577999999999753211 111111111 111111110 0 01
Q ss_pred eEE-E-----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEe
Q 015614 331 KLI-G-----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFD 398 (403)
Q Consensus 331 ~l~-G-----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~n 398 (403)
++. | .-.--.|++.-|+.. +.+++||+++|+|-+.. +|.++.-|.+.|+.|+++.
T Consensus 129 ~l~~g~~~~~~PcTp~av~~lL~~y-------------~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtich 190 (288)
T PRK14171 129 YLHSGISQGFIPCTALGCLAVIKKY-------------EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICH 190 (288)
T ss_pred hhhcCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 221 1 112245666666543 25789999999997666 9999999999999999877
No 133
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.01 E-value=1.3 Score=43.12 Aligned_cols=124 Identities=16% Similarity=0.292 Sum_probs=74.4
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
....+++|++.....++. +++.+.++.+ .++...|+-|-+|....+ -..++.++|. +.+-..+..- -|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~-KDVDGl~~~n----~g 128 (284)
T PRK14193 54 HRDCAEVGITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPA-KDADGLHPTN----LG 128 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc-cCccCCChhh----hh
Confidence 356789999887666653 3566666666 456799999999974211 0111111111 1111111100 01
Q ss_pred eEE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHH--CCCeEEEEec
Q 015614 331 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKS--RGARVVIFDI 399 (403)
Q Consensus 331 ~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~--~g~~i~v~nR 399 (403)
+++ | .-.--.|++.-|+.. +.+++||+++|+|.+.. +|.++.-|.+ .++.|+++..
T Consensus 129 ~l~~~~~~~~PcTp~av~~ll~~~-------------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs 192 (284)
T PRK14193 129 RLVLNEPAPLPCTPRGIVHLLRRY-------------DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHT 192 (284)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCC
Confidence 111 1 123345666666543 35788999999997766 9999999987 6788988874
No 134
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.91 E-value=1 Score=44.29 Aligned_cols=124 Identities=12% Similarity=0.212 Sum_probs=75.7
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEE-----EE
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTI-----IR 325 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi-----~~ 325 (403)
....+++|++..-..++. +++.+.++.+ .++...|+-|=.|+...+ ...++.+++. +.+-..+.. ..
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~-KDVDGl~~~n~g~l~~ 132 (297)
T PRK14186 54 EKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD-KDADGLHPLNLGRLVK 132 (297)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcccCChhhHHHHhC
Confidence 356789999876555542 3577777777 456799999999974222 1122222211 111111110 00
Q ss_pred eccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614 326 RPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 326 ~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR 399 (403)
. +..+ .-.--.|++.-|+.. +.+++||+++|+|.+.. ||.++.-|.+.|+.|+++..
T Consensus 133 ~--~~~~--~PcTp~aii~lL~~~-------------~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs 190 (297)
T PRK14186 133 G--EPGL--RSCTPAGVMRLLRSQ-------------QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHS 190 (297)
T ss_pred C--CCCC--CCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCC
Confidence 0 1001 122356777766543 35788999999997666 99999999999999988853
No 135
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=91.85 E-value=0.18 Score=51.44 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=31.1
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~ 400 (403)
++.+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 45789999999999999999999999 99999865
No 136
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=91.74 E-value=2.4 Score=39.94 Aligned_cols=148 Identities=17% Similarity=0.156 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHH-----HHHHHHHHHcC
Q 015614 24 QVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR-----LEALHLAEDLG 98 (403)
Q Consensus 24 e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~-----~~ll~~~~~~g 98 (403)
++.+.++++.+.++++|=+.--++. ..+......+..+-+.++- ..|.. .-+.+ ..-.+.+++.|
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~~~~------~~~~~~~~~~~~~~~vi~f--p~g~~--~~~~k~~~~~~~~ve~A~~~G 89 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPGYVK------PAAELLAGSGVKVGLVIGF--PFGTS--TTEPKGYDQIVAEVEEAIRLG 89 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGGGHH------HHHHHSTTSTSEEEEEEST--TTSSS--THHHHTCEEEHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhCCCEEEECHHHHH------HHHHHhhccccccceEEEe--CCCCC--ccccccccchHHHHHHHHHcC
Confidence 6777788888889999876333222 1222222222233333442 22222 23344 66678999999
Q ss_pred CcEEEEeccc---cc-------hHHHHHH-hccCCCcEEEEeccCCCCCC-----CHhHHHHHHHHHHHcCCCEEEEEee
Q 015614 99 ADYVDFELKV---AS-------NILGKQY-SSHQSGTRFIVSCNLDCETP-----SEEDLGYLVSRMQATGADIIKLVFS 162 (403)
Q Consensus 99 ~~yvDiEl~~---~~-------~~~~~l~-~~~~~~~kiI~S~H~f~~tp-----~~~~l~~~~~~~~~~gadivKia~~ 162 (403)
++-||+=++. .+ +.+.++. ..++.+.++|+- -...... +.+.+....+-+.++|+|++|.-+.
T Consensus 90 Ad~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg 168 (236)
T PF01791_consen 90 ADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTG 168 (236)
T ss_dssp -SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-S
T ss_pred CceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCC
Confidence 9999987666 21 1233333 345778899887 3211000 1123566666778899999999877
Q ss_pred ---cCCHhHHHHHHHHhccCCCC
Q 015614 163 ---VNDITEIARIFQLLSHCQVP 182 (403)
Q Consensus 163 ---~~~~~D~~~ll~~~~~~~~p 182 (403)
..+..|+..+.+.....+.|
T Consensus 169 ~~~~~t~~~~~~~~~~~~~~~~p 191 (236)
T PF01791_consen 169 KPVGATPEDVELMRKAVEAAPVP 191 (236)
T ss_dssp SSSCSHHHHHHHHHHHHHTHSST
T ss_pred ccccccHHHHHHHHHHHHhcCCC
Confidence 34566777777777766666
No 137
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=91.72 E-value=0.2 Score=53.91 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=31.9
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~ 400 (403)
+++.+|+|+|+||.|-.++..|+..|+ +|++++.+
T Consensus 336 L~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 336 YSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred HhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 457899999999999999999999999 99999864
No 138
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.71 E-value=0.18 Score=53.15 Aligned_cols=36 Identities=36% Similarity=0.271 Sum_probs=32.9
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
.+.+|+|+|+|.+|.+++..++.+|++|++++++++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478999999999999999999999999999998754
No 139
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=91.68 E-value=0.19 Score=47.59 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=30.9
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~ 400 (403)
+++.+|+|+|.||+|.-++.||++-|+ +|++++-+
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D 63 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMD 63 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecc
Confidence 346789999999999999999999999 99988643
No 140
>PLN02928 oxidoreductase family protein
Probab=91.67 E-value=0.3 Score=49.01 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=33.7
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
.+.||++.|+|.|..|++++..|..+|++|+.++|+
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~ 191 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRS 191 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCC
Confidence 467999999999999999999999999999999986
No 141
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=91.54 E-value=1.8 Score=43.04 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=63.0
Q ss_pred CCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-C-----C----chHHHHHHhcCCCcEEEEeecCCCCC
Q 015614 9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-Q-----P----GKDLEIILTKKPLPVLIVYRPKWAGG 78 (403)
Q Consensus 9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-~-----~----~~~l~~l~~~~~~PiI~T~R~~~eGG 78 (403)
+.| +.++|.+.+.++...-++.+.+.|+|++||-+-+.... . . .+.++.+++..++|+++-++..
T Consensus 99 ~~p-vi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~---- 173 (325)
T cd04739 99 SIP-VIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPF---- 173 (325)
T ss_pred CCe-EEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCC----
Confidence 345 55889999998887777777777999999999874311 1 0 1344556666789999998842
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEeccc
Q 015614 79 LYEGDEHKRLEALHLAEDLGADYVDFELKV 108 (403)
Q Consensus 79 ~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~ 108 (403)
+ + +-.++.+.+.+.|++.|.+--..
T Consensus 174 -~--~--~~~~~a~~l~~~Gadgi~~~nt~ 198 (325)
T cd04739 174 -F--S--ALAHMAKQLDAAGADGLVLFNRF 198 (325)
T ss_pred -c--c--CHHHHHHHHHHcCCCeEEEEcCc
Confidence 1 1 34566677778899999875443
No 142
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=91.47 E-value=4.8 Score=38.99 Aligned_cols=91 Identities=14% Similarity=0.173 Sum_probs=55.3
Q ss_pred CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccc-----------hHHHHHHhccCCCcEEEEecc
Q 015614 63 KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVAS-----------NILGKQYSSHQSGTRFIVSCN 131 (403)
Q Consensus 63 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~-----------~~~~~l~~~~~~~~kiI~S~H 131 (403)
.+.|+|+.++.. +.+++.+..+.+.+.|+++|+|.+..+. +...+++...+..+.+.++.-
T Consensus 97 ~~~pvi~si~g~--------~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vK 168 (289)
T cd02810 97 PGQPLIASVGGS--------SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVK 168 (289)
T ss_pred CCCeEEEEeccC--------CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEE
Confidence 478999999843 4578888888888889999999877542 122223211112212222221
Q ss_pred CCCCCCCHhHHHHHHHHHHHcCCCEEEEEee
Q 015614 132 LDCETPSEEDLGYLVSRMQATGADIIKLVFS 162 (403)
Q Consensus 132 ~f~~tp~~~~l~~~~~~~~~~gadivKia~~ 162 (403)
- ....+.+++.++.+.+.+.|+|.+.+...
T Consensus 169 l-~~~~~~~~~~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 169 L-SPYFDLEDIVELAKAAERAGADGLTAINT 198 (289)
T ss_pred e-CCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 1 01113456778888888888888876543
No 143
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.46 E-value=1.3 Score=43.31 Aligned_cols=124 Identities=13% Similarity=0.258 Sum_probs=75.2
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
...++++|++.....++. +++.+.++.+ .+++..|+-|-+|....+- ..++.++|. +.+-..+..- -|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~-KDVDGl~~~n----~g 128 (284)
T PRK14190 54 KKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPE-KDVDGFHPIN----VG 128 (284)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc-ccccccCHhh----HH
Confidence 456789999987666654 2566777777 4568999999999752211 111112211 1111111100 01
Q ss_pred eE-EE----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614 331 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 331 ~l-~G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR 399 (403)
++ .| .-.--.|++.-|+.. +.+++||+++|+|.+.. +|.++.-|.+.|+.|+++..
T Consensus 129 ~l~~~~~~~~PcTp~av~~lL~~~-------------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs 190 (284)
T PRK14190 129 RMMLGQDTFLPCTPHGILELLKEY-------------NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHS 190 (284)
T ss_pred HHhcCCCCCCCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeC
Confidence 11 01 112345666665543 36789999999997666 99999999999999988853
No 144
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=91.45 E-value=0.25 Score=55.66 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=32.2
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
..+|+|+|+|+|.||.++++.|+..|++|+|+.+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 46899999999999999999999999999999863
No 145
>PRK07411 hypothetical protein; Validated
Probab=91.27 E-value=0.23 Score=50.69 Aligned_cols=35 Identities=31% Similarity=0.497 Sum_probs=31.6
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~ 400 (403)
++..+|+|+|+||.|-.++..|+..|+ +|+|++.+
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 346789999999999999999999999 99999865
No 146
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=91.27 E-value=0.32 Score=51.95 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=32.0
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
..|++++|+|+|.+|.++++.|+++|++|+|+.+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 45899999999999999999999999999999864
No 147
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=91.24 E-value=0.29 Score=55.59 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=32.3
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
..+|+++|||+|.||.++++.|++.|.+|+|+.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecc
Confidence 45789999999999999999999999999999875
No 148
>PRK13243 glyoxylate reductase; Reviewed
Probab=91.23 E-value=0.36 Score=48.19 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=34.4
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.+.||++.|+|.|..|++++..|...|++|++++|+.
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~ 183 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR 183 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 4679999999999999999999999999999999875
No 149
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=91.21 E-value=2 Score=42.56 Aligned_cols=91 Identities=25% Similarity=0.449 Sum_probs=63.0
Q ss_pred CCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC------------CC---chHHHHHHhcCCCcEEEEeec
Q 015614 9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF------------QP---GKDLEIILTKKPLPVLIVYRP 73 (403)
Q Consensus 9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~------------~~---~~~l~~l~~~~~~PiI~T~R~ 73 (403)
.+| +.+.|.+.+.+++..-++.+.+.|+|.|||-.-+=.+. ++ .+.++.+++..++|+.+-+|.
T Consensus 62 ~~p-~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~ 140 (319)
T TIGR00737 62 ETP-ISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRI 140 (319)
T ss_pred cce-EEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEc
Confidence 355 56999999999999988888888999999976542110 11 133445666678999888884
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015614 74 KWAGGLYEGDEHKRLEALHLAEDLGADYVDFE 105 (403)
Q Consensus 74 ~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiE 105 (403)
-+ +.....-.++.+.+.+.|++++.+-
T Consensus 141 g~-----~~~~~~~~~~a~~l~~~G~d~i~vh 167 (319)
T TIGR00737 141 GW-----DDAHINAVEAARIAEDAGAQAVTLH 167 (319)
T ss_pred cc-----CCCcchHHHHHHHHHHhCCCEEEEE
Confidence 22 1122234567777788899999874
No 150
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=91.20 E-value=12 Score=40.52 Aligned_cols=152 Identities=13% Similarity=0.098 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEE----EecC----CCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHH
Q 015614 22 VEQVLSNMYQAKAEGADVVEI----RLDC----INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALH 92 (403)
Q Consensus 22 ~~e~~~~~~~~~~~~~D~vEl----RlD~----l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 92 (403)
.++.+.-+...-+.|.+.+|. ..|- +.+ ++.+.+..+++.. +.|+-.-+|..+==|..+.+++-..+.++
T Consensus 26 ~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e-~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~ 104 (593)
T PRK14040 26 LDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGE-DPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVE 104 (593)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCC-CHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHH
Confidence 345554444445679999999 3552 222 4566777777654 57776666754444444556677778899
Q ss_pred HHHHcCCcEEEEeccccc--hHHHHHHhccCCCcEE--EEeccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--
Q 015614 93 LAEDLGADYVDFELKVAS--NILGKQYSSHQSGTRF--IVSCNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN-- 164 (403)
Q Consensus 93 ~~~~~g~~yvDiEl~~~~--~~~~~l~~~~~~~~ki--I~S~H~f~~tp--~~~~l~~~~~~~~~~gadivKia~~~~-- 164 (403)
.+.+.|++.+-|=..+.+ .....+...+..+..+ -++|-. .| +.+.+.+..+++.+.|||.+-|+=|.-
T Consensus 105 ~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~---~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l 181 (593)
T PRK14040 105 RAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTT---SPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLL 181 (593)
T ss_pred HHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEee---CCccCHHHHHHHHHHHHHcCCCEEEECCCCCCc
Confidence 999999999888644432 2222232233233332 344422 23 357789999999999999998887664
Q ss_pred CHhHHHHHHHHhc
Q 015614 165 DITEIARIFQLLS 177 (403)
Q Consensus 165 ~~~D~~~ll~~~~ 177 (403)
++.++.++.+.+.
T Consensus 182 ~P~~~~~lv~~lk 194 (593)
T PRK14040 182 KPYAAYELVSRIK 194 (593)
T ss_pred CHHHHHHHHHHHH
Confidence 5777777776653
No 151
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=91.17 E-value=3.2 Score=42.42 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=87.6
Q ss_pred CCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhc-CCCcEEEEeecCCCCCCCCCCHHHH
Q 015614 9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKR 87 (403)
Q Consensus 9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~ 87 (403)
+.|++++.|-.++.+++++.+++....+.+.+|+=.-++..... +.++.+++. .+.|+.+.+-... ...+
T Consensus 171 ~~p~L~vALD~~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~-~iVk~Lr~~~~~~~I~~DLK~~D--------i~~~ 241 (391)
T PRK13307 171 DPPYLQVALDLPDLEEVERVLSQLPKSDHIIIEAGTPLIKKFGL-EVISKIREVRPDAFIVADLKTLD--------TGNL 241 (391)
T ss_pred ccceEEEecCCCCHHHHHHHHHhcccccceEEEECHHHHHHhCH-HHHHHHHHhCCCCeEEEEecccC--------hhhH
Confidence 35899999999999999988877633346788998887765543 467788776 5788998888641 1222
Q ss_pred HHHHHHHHHcCCcEEEEeccccchHHHHHH-hccCCCcEEEE-eccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614 88 LEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIV-SCNLDCETPSEEDLGYLVSRMQATGADIIKLV 160 (403)
Q Consensus 88 ~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~-S~H~f~~tp~~~~l~~~~~~~~~~gadivKia 160 (403)
. .+.+.+.|++++-+=.....+.+.+.+ ..++.+.++++ ..|. .|| .+.++.+ ..+.|++-+-
T Consensus 242 v--v~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp--~tp-----~e~i~~l-~~~vD~Vllh 306 (391)
T PRK13307 242 E--ARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNV--EDP-----VKLLESL-KVKPDVVELH 306 (391)
T ss_pred H--HHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCC--CCH-----HHHHHHh-hCCCCEEEEc
Confidence 1 667889999999887665543333332 34456778877 5552 122 2233333 4577887555
No 152
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=91.16 E-value=3.2 Score=40.63 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=30.9
Q ss_pred CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcC-CcEEEEecccc
Q 015614 63 KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVA 109 (403)
Q Consensus 63 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g-~~yvDiEl~~~ 109 (403)
.+.|+|+.+... +.+++.+..+.+.+.| +|+|+|-+..+
T Consensus 90 ~~~p~i~si~g~--------~~~~~~~~a~~~~~aG~~D~iElN~~cP 129 (301)
T PRK07259 90 FDTPIIANVAGS--------TEEEYAEVAEKLSKAPNVDAIELNISCP 129 (301)
T ss_pred cCCcEEEEeccC--------CHHHHHHHHHHHhccCCcCEEEEECCCC
Confidence 478999999732 4678888888888998 99999976543
No 153
>PRK14031 glutamate dehydrogenase; Provisional
Probab=91.15 E-value=0.71 Score=47.82 Aligned_cols=53 Identities=21% Similarity=0.373 Sum_probs=43.7
Q ss_pred ccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEe
Q 015614 337 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFD 398 (403)
Q Consensus 337 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~n 398 (403)
--+.|...+++..+.+. +.+++|++|+|-|.|-+|..++..|.+.|++|+.++
T Consensus 206 aTg~Gv~~~~~~~~~~~---------g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVS 258 (444)
T PRK14031 206 ATGYGNIYFLMEMLKTK---------GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMS 258 (444)
T ss_pred ccHHHHHHHHHHHHHhc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 34678888888877633 256889999999999999999999999999876643
No 154
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=91.14 E-value=6.6 Score=37.81 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHh--cCCCcEEEEeecC-CCCCCCCCCHHHHHHHHHHHHHc
Q 015614 21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILT--KKPLPVLIVYRPK-WAGGLYEGDEHKRLEALHLAEDL 97 (403)
Q Consensus 21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~--~~~~PiI~T~R~~-~eGG~~~~~~~~~~~ll~~~~~~ 97 (403)
+.+++..-++++.+.++|.|=+--- .+....+ ..+.|+++++=+. .-|. .+..+....-.+.+++.
T Consensus 37 ~~~d~~~~~~~a~~~~~~av~v~~~---------~~~~~~~~~~~~~~l~~~i~~~~~~~~--~~~~~~~~~~ve~A~~~ 105 (267)
T PRK07226 37 GLVDIRDTVNKVAEGGADAVLMHKG---------LARHGHRGYGRDVGLIVHLSASTSLSP--DPNDKVLVGTVEEAIKL 105 (267)
T ss_pred CcCCHHHHHHHHHhcCCCEEEeCHh---------HHhhhccccCCCCcEEEEEcCCCCCCC--CCCcceeeecHHHHHHc
Confidence 4566666677777778888865211 2222222 2467777765521 1110 11114455557789999
Q ss_pred CCcEEEEeccccc----h---HHHHHHh-ccCCCcEEEEe-ccC---CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCC
Q 015614 98 GADYVDFELKVAS----N---ILGKQYS-SHQSGTRFIVS-CNL---DCETPSEEDLGYLVSRMQATGADIIKLVFSVND 165 (403)
Q Consensus 98 g~~yvDiEl~~~~----~---~~~~l~~-~~~~~~kiI~S-~H~---f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~ 165 (403)
|++.||+=+.... + ...++.. .++.+..+|+- |-+ .+..-+.+++....+.+.+.|||++|.-...
T Consensus 106 Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~-- 183 (267)
T PRK07226 106 GADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYTG-- 183 (267)
T ss_pred CCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCC--
Confidence 9999998655422 1 2223331 23355566553 211 1111233455666677888999999997432
Q ss_pred HhHHHHHHHHhccCCCCEEEEE
Q 015614 166 ITEIARIFQLLSHCQVPIIAYS 187 (403)
Q Consensus 166 ~~D~~~ll~~~~~~~~p~i~~~ 187 (403)
|...+-+.......|+.+.+
T Consensus 184 --~~~~l~~~~~~~~ipV~a~G 203 (267)
T PRK07226 184 --DPESFREVVEGCPVPVVIAG 203 (267)
T ss_pred --CHHHHHHHHHhCCCCEEEEe
Confidence 33223333333467775544
No 155
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=91.12 E-value=3.1 Score=39.82 Aligned_cols=152 Identities=16% Similarity=0.229 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecC-CCCCCCCCCHHHHHHHHHHHHHcC
Q 015614 20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPK-WAGGLYEGDEHKRLEALHLAEDLG 98 (403)
Q Consensus 20 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~-~eGG~~~~~~~~~~~ll~~~~~~g 98 (403)
.+.+++.+-++++.+.++|+|=+---++.. .... ...+.++++++-.. ..|.. ..........+.+++.|
T Consensus 33 ~~~~~~~~~~~~a~~~~~~~v~~~p~~~~~------~~~~-~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~v~~al~~G 103 (258)
T TIGR01949 33 KGLVDIRKTVNEVAEGGADAVLLHKGIVRR------GHRG-YGKDVGLIIHLSASTSLSPD--PNDKRIVTTVEDAIRMG 103 (258)
T ss_pred CCcCCHHHHHHHHHhcCCCEEEeCcchhhh------cccc-cCCCCcEEEEEcCCCCCCCC--CCcceeeeeHHHHHHCC
Confidence 345666666777777788888663222221 1111 23477877655211 11111 11223445678999999
Q ss_pred CcEEEEeccccc----hHH---HHHHh-ccCCCcEEEEec-----cCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCC
Q 015614 99 ADYVDFELKVAS----NIL---GKQYS-SHQSGTRFIVSC-----NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVND 165 (403)
Q Consensus 99 ~~yvDiEl~~~~----~~~---~~l~~-~~~~~~kiI~S~-----H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~ 165 (403)
++.||+...... +.. .++.. .++.+..+|+-. |... .+.+++.+..+.+.+.|||++|.-+.
T Consensus 104 a~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~--~~~~~~~~~~~~a~~~GADyikt~~~--- 178 (258)
T TIGR01949 104 ADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDD--RDPELVAHAARLGAELGADIVKTPYT--- 178 (258)
T ss_pred CCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCccccc--ccHHHHHHHHHHHHHHCCCEEeccCC---
Confidence 999999776321 222 23332 234566666622 2211 12344545457777899999997532
Q ss_pred HhHHHHHHHHhccCCCCEEEE
Q 015614 166 ITEIARIFQLLSHCQVPIIAY 186 (403)
Q Consensus 166 ~~D~~~ll~~~~~~~~p~i~~ 186 (403)
.+...+-++......|+.++
T Consensus 179 -~~~~~l~~~~~~~~iPVva~ 198 (258)
T TIGR01949 179 -GDIDSFRDVVKGCPAPVVVA 198 (258)
T ss_pred -CCHHHHHHHHHhCCCcEEEe
Confidence 23333333444456777554
No 156
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=91.10 E-value=0.29 Score=55.69 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=31.5
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
.+++|+|||+|.||.++|+.|++.|.+|+|+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4689999999999999999999999999999875
No 157
>PLN02852 ferredoxin-NADP+ reductase
Probab=91.05 E-value=0.38 Score=50.58 Aligned_cols=36 Identities=28% Similarity=0.139 Sum_probs=31.8
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHH--CCCeEEEEecCC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKS--RGARVVIFDIDF 401 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~--~g~~i~v~nR~~ 401 (403)
..+++++|+|+|.||.++++.|.+ .|++|+|+.|.+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 356889999999999999999986 688999999865
No 158
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.05 E-value=1.3 Score=43.37 Aligned_cols=117 Identities=17% Similarity=0.271 Sum_probs=74.1
Q ss_pred HHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHHcccccCCHHHhhccceeEEEEeccCCeEE
Q 015614 259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLI 333 (403)
Q Consensus 259 ~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavNTi~~~~~~g~l~ 333 (403)
...+++|++.....++. +++.+.++.+ .++...|+-|-.|+-.. +|+ . +.+.+++.-. + =|| ++
T Consensus 54 k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~----id~---~-~i~~~I~p~K-D-VDG-l~ 122 (286)
T PRK14184 54 RACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKG----LDS---Q-RCLELIDPAK-D-VDG-FH 122 (286)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCCCC----CCH---H-HHHhccCccc-C-ccc-CC
Confidence 46789999987766653 3566777777 45689999999997422 221 1 1112221110 0 011 11
Q ss_pred EE-------------eccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHH----CCCeEE
Q 015614 334 GY-------------NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKS----RGARVV 395 (403)
Q Consensus 334 G~-------------NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~----~g~~i~ 395 (403)
-+ -.--.|++.-|+.. +.+++||+++|+|.+.. +|.++.-|.+ .|+.|+
T Consensus 123 ~~N~g~l~~~~~~~~PcTp~av~~lL~~~-------------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt 189 (286)
T PRK14184 123 PENMGRLALGLPGFRPCTPAGVMTLLERY-------------GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVT 189 (286)
T ss_pred HhhHHHHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEE
Confidence 11 12345677766553 26788999999997666 9999999988 778888
Q ss_pred EEec
Q 015614 396 IFDI 399 (403)
Q Consensus 396 v~nR 399 (403)
++..
T Consensus 190 ~~hs 193 (286)
T PRK14184 190 VCHS 193 (286)
T ss_pred EEeC
Confidence 8764
No 159
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=91.03 E-value=0.39 Score=54.98 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=31.7
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
.+++|+|||+|.||.++++.|++.|.+|+|+.+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~ 462 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEAL 462 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 5789999999999999999999999999999875
No 160
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=91.03 E-value=8.8 Score=36.88 Aligned_cols=156 Identities=18% Similarity=0.286 Sum_probs=85.6
Q ss_pred CCcccCCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCC----CCCCchH---H----HHHHhcCCCcEEE
Q 015614 1 MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCIN----NFQPGKD---L----EIILTKKPLPVLI 69 (403)
Q Consensus 1 ~~~~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~----~~~~~~~---l----~~l~~~~~~PiI~ 69 (403)
||+.|+++....= .-...+.++++..+.+..+.|||+|.+--..-. ..++.++ + ..+++..+.|+-+
T Consensus 3 mgilN~tpdSF~d--g~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsi 80 (257)
T TIGR01496 3 MGIVNVTPDSFSD--GGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISV 80 (257)
T ss_pred EEEEeCCCCCCCC--CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 6677776664320 011245678888888878899999999432211 1111222 2 2233334677543
Q ss_pred EeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEE-EEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCH---------
Q 015614 70 VYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV-DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSE--------- 139 (403)
Q Consensus 70 T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yv-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~--------- 139 (403)
-+ .+-+.++++++.|+++| |+.....++..+.+ ++.+..+|+ .|+ .+.|..
T Consensus 81 --DT------------~~~~vi~~al~~G~~iINsis~~~~~~~~~l~---~~~~~~vV~-m~~-~g~p~~~~~~~~~~~ 141 (257)
T TIGR01496 81 --DT------------YRAEVARAALEAGADIINDVSGGQDPAMLEVA---AEYGVPLVL-MHM-RGTPRTMQENPHYED 141 (257)
T ss_pred --eC------------CCHHHHHHHHHcCCCEEEECCCCCCchhHHHH---HHcCCcEEE-EeC-CCCCcccccCCCccc
Confidence 32 23357788888898875 34333233333322 235678888 454 234422
Q ss_pred ------hHHHHHHHHHHHcCCCEEEEEeec-----CCHhHHHHHHHHhc
Q 015614 140 ------EDLGYLVSRMQATGADIIKLVFSV-----NDITEIARIFQLLS 177 (403)
Q Consensus 140 ------~~l~~~~~~~~~~gadivKia~~~-----~~~~D~~~ll~~~~ 177 (403)
+.+.+.++++.+.|-+.-++..=| .+.+++..+++...
T Consensus 142 ~~~~~~~~~~~~i~~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~ 190 (257)
T TIGR01496 142 VVEEVLRFLEARAEELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLE 190 (257)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHH
Confidence 225566777888887544554433 45667766666644
No 161
>PRK12831 putative oxidoreductase; Provisional
Probab=90.91 E-value=0.38 Score=50.23 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=32.1
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
..+++++|||+|-+|.++++.|+++|.+|+|+.+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~ 172 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEAL 172 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 45789999999999999999999999999999874
No 162
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=90.89 E-value=10 Score=37.68 Aligned_cols=95 Identities=9% Similarity=0.107 Sum_probs=67.8
Q ss_pred CeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC------------CC---chHHHHHHhcCCCcEEEEeecC
Q 015614 10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF------------QP---GKDLEIILTKKPLPVLIVYRPK 74 (403)
Q Consensus 10 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~------------~~---~~~l~~l~~~~~~PiI~T~R~~ 74 (403)
.| +.+.|.+.+.+++..-++.+...|+|.|||-+-+=... ++ .+.++.+++..+.|+.+-+|.-
T Consensus 55 ~p-~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g 133 (318)
T TIGR00742 55 SP-VALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIG 133 (318)
T ss_pred Cc-EEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 45 46999999999999888887778999999988773211 11 1344455566689999999964
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccc
Q 015614 75 WAGGLYEGDEHKRLEALHLAEDLGADYVDFELKV 108 (403)
Q Consensus 75 ~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~ 108 (403)
++-. .+.+...++.+.+.+.|++.|+|--.+
T Consensus 134 ~~~~---~~~~~~~~~~~~l~~~G~~~itvHgRt 164 (318)
T TIGR00742 134 IDPL---DSYEFLCDFVEIVSGKGCQNFIVHARK 164 (318)
T ss_pred CCCc---chHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 3211 122456678888889999999988665
No 163
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=90.88 E-value=5.3 Score=36.83 Aligned_cols=110 Identities=15% Similarity=0.230 Sum_probs=66.0
Q ss_pred eeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEe---cCCCCCC-CchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHH
Q 015614 11 TMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRL---DCINNFQ-PGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHK 86 (403)
Q Consensus 11 ~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRl---D~l~~~~-~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~ 86 (403)
..|.++|...|......+++.+.+.|+|+|++|+ .+.++.. ..+.++.+++..+.|+-+.+-.. +.+.
T Consensus 4 ~~~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~--------d~~~ 75 (220)
T PRK05581 4 VLIAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVE--------NPDR 75 (220)
T ss_pred cEEEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeC--------CHHH
Confidence 3578899999988888889999999999999985 2222211 13456666654444543444432 2334
Q ss_pred HHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEecc
Q 015614 87 RLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCN 131 (403)
Q Consensus 87 ~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H 131 (403)
+. +.+.+.|+++|=+=....+.....+...++.+.+++++.+
T Consensus 76 ~i---~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~ 117 (220)
T PRK05581 76 YV---PDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLN 117 (220)
T ss_pred HH---HHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEEC
Confidence 44 4445788888555443333222222223345677888775
No 164
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=90.88 E-value=14 Score=35.58 Aligned_cols=191 Identities=16% Similarity=0.113 Sum_probs=108.6
Q ss_pred HHHHHhcCCCEEEEEecCCCCC--------CCchHHHHHHhcC--CCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015614 29 MYQAKAEGADVVEIRLDCINNF--------QPGKDLEIILTKK--PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG 98 (403)
Q Consensus 29 ~~~~~~~~~D~vElRlD~l~~~--------~~~~~l~~l~~~~--~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g 98 (403)
++..-+.|+|.||+=.=.-.+. .+.+.+..+++.. +.++..-+|.... -.+.+..+.+.|
T Consensus 26 a~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----------~~~~l~~a~~~g 95 (266)
T cd07944 26 YRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGND----------DIDLLEPASGSV 95 (266)
T ss_pred HHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCC----------CHHHHHHHhcCC
Confidence 3333457999999964222111 1235566666543 6788888886431 123566778888
Q ss_pred CcEEEEecccc--chHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--CHhHHHHHHH
Q 015614 99 ADYVDFELKVA--SNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--DITEIARIFQ 174 (403)
Q Consensus 99 ~~yvDiEl~~~--~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~--~~~D~~~ll~ 174 (403)
++.|-+-.... ++..+.+...+..+.++.++.-+...+ +.+.+.+.++++.+.|+|.+-++=+.- ++.++.++.+
T Consensus 96 v~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~-~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~ 174 (266)
T cd07944 96 VDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGY-SDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIIS 174 (266)
T ss_pred cCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCC-CHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHH
Confidence 99877764432 222222223344566777776553333 367899999999999999988886553 5888888888
Q ss_pred HhccC-C--CCEEEEEcCccch--hhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614 175 LLSHC-Q--VPIIAYSVGERGL--VSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (403)
Q Consensus 175 ~~~~~-~--~p~i~~~MG~~G~--~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~ 230 (403)
.+.+. + .|+-.=+=-..|. ..-+..-..|....-+++.+ +-..|+++++++...++
T Consensus 175 ~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN~~~E~~v~~l~ 236 (266)
T cd07944 175 LLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGRGAGNLPTELLLDYLN 236 (266)
T ss_pred HHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCCCcCcHHHHHHHHHHH
Confidence 76543 3 4442211111121 11111122233333344332 23578888888776554
No 165
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=90.88 E-value=6.5 Score=37.62 Aligned_cols=139 Identities=19% Similarity=0.210 Sum_probs=82.3
Q ss_pred CeeEEEec--ccCC-----HHHHHHHHHHHHhcCCCEEEEEecCCCCCCCch---HHHHHH---hcCCCcEEEEeecCCC
Q 015614 10 TTMICAPL--MAQS-----VEQVLSNMYQAKAEGADVVEIRLDCINNFQPGK---DLEIIL---TKKPLPVLIVYRPKWA 76 (403)
Q Consensus 10 ~~~icv~l--~~~~-----~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~---~l~~l~---~~~~~PiI~T~R~~~e 76 (403)
.+.+|+++ .++. .+.....+++++..|+|.|-+|...... ...+ .+..++ +..+.|+++-.- ..
T Consensus 70 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~~-~~~~~~~~~~~i~~~~~~~g~~liv~~~--~~ 146 (258)
T TIGR01949 70 DVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGSD-TEWEQIRDLGMIAEICDDWGVPLLAMMY--PR 146 (258)
T ss_pred CCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCCc-hHHHHHHHHHHHHHHHHHcCCCEEEEEe--cc
Confidence 34467777 3332 1235556788889999999999875432 1122 233333 235789887322 33
Q ss_pred CCCCC-CCHHHHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCC
Q 015614 77 GGLYE-GDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGAD 155 (403)
Q Consensus 77 GG~~~-~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gad 155 (403)
|.... .+.+...+..+.+.+.|+|||=+......+.++++... ....|+.+=- -++.+.++..+.++++.+.|++
T Consensus 147 Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~~~~~~l~~~~~~--~~iPVva~GG--i~~~~~~~~~~~i~~~~~aGa~ 222 (258)
T TIGR01949 147 GPHIDDRDPELVAHAARLGAELGADIVKTPYTGDIDSFRDVVKG--CPAPVVVAGG--PKTNSDREFLQMIKDAMEAGAA 222 (258)
T ss_pred CcccccccHHHHHHHHHHHHHHCCCEEeccCCCCHHHHHHHHHh--CCCcEEEecC--CCCCCHHHHHHHHHHHHHcCCc
Confidence 43222 23344444457778899999998765434555555532 2345554421 1223467788889988899998
No 166
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=90.88 E-value=0.37 Score=50.28 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=32.4
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
..+++++|+|+|.+|.++++.|.+.|.+|+|+.+..
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~ 176 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD 176 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 357899999999999999999999999999998753
No 167
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.83 E-value=0.96 Score=44.01 Aligned_cols=125 Identities=18% Similarity=0.270 Sum_probs=76.0
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
....+++|++.....++. +++.+.++.+ .++...|+-|-.|.-..+- ..++.++|. +.+-..+..- -|
T Consensus 48 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~-KDVDGl~~~n----~g 122 (279)
T PRK14178 48 HRACERVGIGSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPE-KDVDGFHPLN----LG 122 (279)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc-cCcccCChhh----HH
Confidence 346789999987766654 3566777777 5678999999999742211 111111110 1111111000 01
Q ss_pred eEE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcch-hHHHHHHHHHHHCCCeEEEEecC
Q 015614 331 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 331 ~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaG-Gaarai~~al~~~g~~i~v~nR~ 400 (403)
+++ | .-.--.|++.-|+.. +.+++|++++|+|-+ -.+|.++.-|...|+.|+++.++
T Consensus 123 ~l~~~~~~~~PcTp~av~~ll~~~-------------~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~ 185 (279)
T PRK14178 123 RLVSGLPGFAPCTPNGIMTLLHEY-------------KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSK 185 (279)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecC
Confidence 111 1 112345666666543 357899999999988 55999999999999998888764
No 168
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.82 E-value=0.34 Score=52.65 Aligned_cols=35 Identities=29% Similarity=0.273 Sum_probs=32.4
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.+++++|+|+|.+|.++++.|++.|.+|+|+.|..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 58999999999999999999999999999998764
No 169
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.68 E-value=1.1 Score=43.88 Aligned_cols=124 Identities=18% Similarity=0.269 Sum_probs=76.5
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
...++++|++.....++. +++.+.++.+ .++...|+-|-.|.-..+- ..++.++|. +.+-..+..- -|
T Consensus 48 ~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~-KDVDGl~p~n----~g 122 (287)
T PRK14181 48 VKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPD-KDVDGLHPVN----MG 122 (287)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcc-cCcccCChhh----HH
Confidence 456789999887766653 3577777777 4578999999999752221 112222221 1111111110 01
Q ss_pred eEE-EE-----eccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHC----CCeEEEEec
Q 015614 331 KLI-GY-----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSR----GARVVIFDI 399 (403)
Q Consensus 331 ~l~-G~-----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~----g~~i~v~nR 399 (403)
+++ |. -.--.|++.-|+.. +.+++||+++|+|-+.. +|.++.-|.+. ++.|+++..
T Consensus 123 ~l~~g~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs 189 (287)
T PRK14181 123 KLLLGETDGFIPCTPAGIIELLKYY-------------EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHS 189 (287)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCC
Confidence 111 11 12345677766543 35789999999997666 99999999888 678998874
No 170
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.62 E-value=1.1 Score=43.99 Aligned_cols=120 Identities=18% Similarity=0.263 Sum_probs=74.3
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHHcccccCCHHHhhccceeEEEEeccC---
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSD--- 329 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavNTi~~~~~~--- 329 (403)
...++++|++.....++. +++.+.++.+ .++...|+-|-.|... ++| +.. .+.+++--. + =|
T Consensus 53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~----~id---~~~-i~~~I~p~K-D-VDGl~ 122 (295)
T PRK14174 53 AKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPK----QID---EFA-VTLAIDPAK-D-VDGFH 122 (295)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCC---HHH-HHhcCCccc-c-ccccC
Confidence 356889999988777764 3577777777 4577999999999752 222 111 111111110 0 01
Q ss_pred ----CeE-EEE------eccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHH----CCCe
Q 015614 330 ----GKL-IGY------NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKS----RGAR 393 (403)
Q Consensus 330 ----g~l-~G~------NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~----~g~~ 393 (403)
|++ .|+ -.--.|++.-|+.. +.+++||+++|+|.+.. +|.++.-|.+ .|+.
T Consensus 123 ~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y-------------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~at 189 (295)
T PRK14174 123 PENLGRLVMGHLDKCFVSCTPYGILELLGRY-------------NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCT 189 (295)
T ss_pred hhhHHHHhcCCCCCCcCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCE
Confidence 111 121 12345666655443 25788999999997766 9999998887 5778
Q ss_pred EEEEecC
Q 015614 394 VVIFDID 400 (403)
Q Consensus 394 i~v~nR~ 400 (403)
|+++..+
T Consensus 190 Vt~~hs~ 196 (295)
T PRK14174 190 VTICHSA 196 (295)
T ss_pred EEEEeCC
Confidence 8877643
No 171
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=90.60 E-value=19 Score=39.61 Aligned_cols=107 Identities=20% Similarity=0.232 Sum_probs=64.1
Q ss_pred HHHHHhcCCCEEEEEecC--CCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015614 29 MYQAKAEGADVVEIRLDC--INNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFEL 106 (403)
Q Consensus 29 ~~~~~~~~~D~vElRlD~--l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl 106 (403)
+..+...||++|=+=-|- |... .+.|..+|+..++|++-- + |=.+ .| ++ ..+...|+|.|=+=.
T Consensus 76 a~~y~~~GA~aiSVlTe~~~F~Gs--~~~l~~vr~~v~~PvLrK-----D---FIid--~~-QI-~ea~~~GADavLLI~ 141 (695)
T PRK13802 76 AREYEQGGASAISVLTEGRRFLGS--LDDFDKVRAAVHIPVLRK-----D---FIVT--DY-QI-WEARAHGADLVLLIV 141 (695)
T ss_pred HHHHHHcCCcEEEEecCcCcCCCC--HHHHHHHHHhCCCCEEec-----c---ccCC--HH-HH-HHHHHcCCCEeehhH
Confidence 344556799999886652 3332 357888888889998821 1 2122 22 22 344456788777665
Q ss_pred cccc-hHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614 107 KVAS-NILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (403)
Q Consensus 107 ~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi 159 (403)
.... +.+++++ ..+.-+...++..|+ .+ -++++.+.|++|+=|
T Consensus 142 ~~L~~~~l~~l~~~a~~lGme~LvEvh~------~~----el~~a~~~ga~iiGI 186 (695)
T PRK13802 142 AALDDAQLKHLLDLAHELGMTVLVETHT------RE----EIERAIAAGAKVIGI 186 (695)
T ss_pred hhcCHHHHHHHHHHHHHcCCeEEEEeCC------HH----HHHHHHhCCCCEEEE
Confidence 5443 3455555 344567888888886 22 344555677776543
No 172
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=90.54 E-value=0.3 Score=52.08 Aligned_cols=37 Identities=22% Similarity=0.069 Sum_probs=32.7
Q ss_pred CCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 366 ~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
.+++.++|.|| ||.|++++..|.+.|++|+++.|+.+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~e 115 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQ 115 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 35789999996 99999999999999999999999754
No 173
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=90.52 E-value=0.43 Score=49.55 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=32.2
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
..+++++|+|+|-+|.++++.|.+.|.+|+|+.+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~ 165 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEAL 165 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence 45789999999999999999999999999999875
No 174
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=90.50 E-value=0.41 Score=47.75 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=34.2
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.+.|+++.|+|.|..|++++..|...|++|+.++|+.
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~ 179 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYP 179 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCh
Confidence 4678999999999999999999999999999999875
No 175
>PLN02334 ribulose-phosphate 3-epimerase
Probab=90.49 E-value=15 Score=34.36 Aligned_cols=112 Identities=11% Similarity=0.076 Sum_probs=68.9
Q ss_pred CCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-CCc---hHHHHHHhcCCCcEEEEeecCCCCCCCCCCH
Q 015614 9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-QPG---KDLEIILTKKPLPVLIVYRPKWAGGLYEGDE 84 (403)
Q Consensus 9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~ 84 (403)
+.-.|..++...+...+..+++.+...|+|.+-+|+--..-. +.. +.+..+++.++.|+-+++-.. +.
T Consensus 6 ~~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~--------~p 77 (229)
T PLN02334 6 NDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVT--------NP 77 (229)
T ss_pred CCceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccC--------CH
Confidence 344577777777777788888888888999999976543211 111 466777777777755554432 33
Q ss_pred HHHHHHHHHHHHcCCcEE--EEeccccchHHHHHHhccCCCcEEEEecc
Q 015614 85 HKRLEALHLAEDLGADYV--DFELKVASNILGKQYSSHQSGTRFIVSCN 131 (403)
Q Consensus 85 ~~~~~ll~~~~~~g~~yv--DiEl~~~~~~~~~l~~~~~~~~kiI~S~H 131 (403)
+.|++ .+.+.|+++| =+|....+...+.+...++.+.++-+|.|
T Consensus 78 ~d~~~---~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~ 123 (229)
T PLN02334 78 EDYVP---DFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLN 123 (229)
T ss_pred HHHHH---HHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEEC
Confidence 45554 4577899999 55520112122222223345778888887
No 176
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=90.49 E-value=2.7 Score=41.63 Aligned_cols=88 Identities=18% Similarity=0.248 Sum_probs=62.4
Q ss_pred EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC------------CC---chHHHHHHhcC--CCcEEEEeecCC
Q 015614 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF------------QP---GKDLEIILTKK--PLPVLIVYRPKW 75 (403)
Q Consensus 13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~------------~~---~~~l~~l~~~~--~~PiI~T~R~~~ 75 (403)
+.+.|.+.+.+++...++.+.+.|+|.|||-+-+-... ++ .+-+..+++.. ++|+-+-+|.
T Consensus 65 ~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~-- 142 (312)
T PRK10550 65 VRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRL-- 142 (312)
T ss_pred EEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEEC--
Confidence 56999999999999888888888999999998884311 11 12334445544 3787777775
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015614 76 AGGLYEGDEHKRLEALHLAEDLGADYVDFEL 106 (403)
Q Consensus 76 eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl 106 (403)
| ++ +.++..++.+.+.+.|++++.|--
T Consensus 143 --g-~~-~~~~~~~~a~~l~~~Gvd~i~Vh~ 169 (312)
T PRK10550 143 --G-WD-SGERKFEIADAVQQAGATELVVHG 169 (312)
T ss_pred --C-CC-CchHHHHHHHHHHhcCCCEEEECC
Confidence 2 22 223467888888899999998753
No 177
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=90.41 E-value=21 Score=35.74 Aligned_cols=199 Identities=15% Similarity=0.207 Sum_probs=106.3
Q ss_pred cccCCHHHHHHHHHHHHhcCCCEEEEE---------ecC-CCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHH
Q 015614 17 LMAQSVEQVLSNMYQAKAEGADVVEIR---------LDC-INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEH 85 (403)
Q Consensus 17 l~~~~~~e~~~~~~~~~~~~~D~vElR---------lD~-l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~ 85 (403)
++..+..++...+ .+.|+|.||+- +++ +...++.+.+..+++.. +..+..-+++ |.. .
T Consensus 21 f~~~~~~~ia~~L---d~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~p----g~~--~-- 89 (333)
T TIGR03217 21 FTIEQVRAIAAAL---DEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLP----GIG--T-- 89 (333)
T ss_pred CCHHHHHHHHHHH---HHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEecc----Ccc--C--
Confidence 3334444444444 45699999993 332 33333445666665443 3333333332 111 1
Q ss_pred HHHHHHHHHHHcCCcEEEEeccccc-hHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015614 86 KRLEALHLAEDLGADYVDFELKVAS-NILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV 163 (403)
Q Consensus 86 ~~~~ll~~~~~~g~~yvDiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~ 163 (403)
.+-++.+.+.|++.|-|=....+ +...+.+ ..+..+..+.++.-+-... +.+++.++.+++.++|+|.+=++=+.
T Consensus 90 --~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~-~~e~l~~~a~~~~~~Ga~~i~i~DT~ 166 (333)
T TIGR03217 90 --VHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMT-PPEKLAEQAKLMESYGADCVYIVDSA 166 (333)
T ss_pred --HHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCC-CHHHHHHHHHHHHhcCCCEEEEccCC
Confidence 23468888999999887554432 1222222 3344556665555432122 35789999999999999998887665
Q ss_pred C--CHhHHHHHHHHhccC-C--CCEEEE-EcCcc--chhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614 164 N--DITEIARIFQLLSHC-Q--VPIIAY-SVGER--GLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (403)
Q Consensus 164 ~--~~~D~~~ll~~~~~~-~--~p~i~~-~MG~~--G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~ 230 (403)
- +++|+.++.+.+.+. + .|+ .+ +=-.. +...-+..-.-|....=+++.. +...|+.+++++...++
T Consensus 167 G~~~P~~v~~~v~~l~~~l~~~i~i-g~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~~aGN~~~E~lv~~l~ 241 (333)
T TIGR03217 167 GAMLPDDVRDRVRALKAVLKPETQV-GFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGAGAGNAPLEVFVAVLD 241 (333)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCceE-EEEeCCCCchHHHHHHHHHHhCCCEEEeecccccccccCccHHHHHHHHH
Confidence 4 588998888876543 2 333 22 11111 1111111111233332233322 24578888877765554
No 178
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=90.38 E-value=16 Score=34.57 Aligned_cols=84 Identities=20% Similarity=0.199 Sum_probs=48.0
Q ss_pred EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCc----------------hHHHHHHhcCCCcEEEEeecCCC
Q 015614 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG----------------KDLEIILTKKPLPVLIVYRPKWA 76 (403)
Q Consensus 13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~----------------~~l~~l~~~~~~PiI~T~R~~~e 76 (403)
.-++.-.++.++...-++...+. +|++||-+-+-....+. +.++.+|+..++|+++-..-+.
T Consensus 8 ~y~~~G~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~- 85 (244)
T PRK13125 8 VYLTAGYPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLED- 85 (244)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecch-
Confidence 34566788999888877665455 99999988544432111 2445566566888764322111
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015614 77 GGLYEGDEHKRLEALHLAEDLGADYVDF 104 (403)
Q Consensus 77 GG~~~~~~~~~~~ll~~~~~~g~~yvDi 104 (403)
+..+.+ ++++.+.+.|++.|=+
T Consensus 86 ---~~~~~~---~~i~~~~~~Gadgvii 107 (244)
T PRK13125 86 ---YVDSLD---NFLNMARDVGADGVLF 107 (244)
T ss_pred ---hhhCHH---HHHHHHHHcCCCEEEE
Confidence 011222 3445556666666544
No 179
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=90.33 E-value=1.1 Score=43.06 Aligned_cols=52 Identities=25% Similarity=0.382 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEE-EEe
Q 015614 338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFD 398 (403)
Q Consensus 338 D~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~-v~n 398 (403)
-+.|...+++..+... +..++|++++|-|-|.+++.++..|.++|++|. |.+
T Consensus 17 Tg~Gv~~~~~~~~~~~---------~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 17 TGYGLVYFVEEMLKDR---------NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred hHHHHHHHHHHHHHhc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 4678888888876632 256789999999999999999999999999765 655
No 180
>PRK06701 short chain dehydrogenase; Provisional
Probab=90.33 E-value=0.48 Score=45.93 Aligned_cols=37 Identities=32% Similarity=0.526 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.+++++++|.|+ ||.|++++..|.+.|++|+++.|+.
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 456899999995 7889999999999999999998864
No 181
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=90.32 E-value=15 Score=33.96 Aligned_cols=111 Identities=23% Similarity=0.213 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015614 25 VLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDF 104 (403)
Q Consensus 25 ~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDi 104 (403)
....++.+...|||++=+--|-.......+.+..+++..++|+++- |+. .+++ .++.+.+.|++.|=+
T Consensus 33 ~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~------~~i--~~~~----~v~~~~~~Gad~v~l 100 (217)
T cd00331 33 PVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLRK------DFI--IDPY----QIYEARAAGADAVLL 100 (217)
T ss_pred HHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEEC------Cee--cCHH----HHHHHHHcCCCEEEE
Confidence 3444455566799999432221111112356777777779999951 221 1221 367788899998865
Q ss_pred eccccc-hHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015614 105 ELKVAS-NILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII 157 (403)
Q Consensus 105 El~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadiv 157 (403)
-....+ +..+++. ..+.-+..+++..|+ +++ ++++.+.|+|++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~------~~e----~~~~~~~g~~~i 145 (217)
T cd00331 101 IVAALDDEQLKELYELARELGMEVLVEVHD------EEE----LERALALGAKII 145 (217)
T ss_pred eeccCCHHHHHHHHHHHHHcCCeEEEEECC------HHH----HHHHHHcCCCEE
Confidence 433222 3333443 223357777888874 444 455566788887
No 182
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=90.26 E-value=0.42 Score=49.60 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=32.4
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
..+++++|+|+|.+|.++++.|.+.|.+|+|+.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~ 173 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD 173 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 457899999999999999999999999999998763
No 183
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=90.17 E-value=5.6 Score=38.32 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCC--CchHHHHHHh---cCCCcEEEEeecCCCCCCCC--CCHHHHHHHHHHHH
Q 015614 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQ--PGKDLEIILT---KKPLPVLIVYRPKWAGGLYE--GDEHKRLEALHLAE 95 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~--~~~~l~~l~~---~~~~PiI~T~R~~~eGG~~~--~~~~~~~~ll~~~~ 95 (403)
+....+++++++.|+|.+-+|+..-...+ ..+.+.++++ ..++|+++-.+. .|.... .++++.....+.+.
T Consensus 93 ~~~~~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~--~g~~~e~~~~~~~i~~a~~~a~ 170 (267)
T PRK07226 93 KVLVGTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYP--RGPGIKNEYDPEVVAHAARVAA 170 (267)
T ss_pred ceeeecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEec--CCCccCCCccHHHHHHHHHHHH
Confidence 45566678888999999999988653221 1123334443 358898885442 232221 23455555567888
Q ss_pred HcCCcEEEEeccccchHHHHHHhccCCCcEEEEe--ccCCCCCCCHhHHHHHHHHHHHcCCC
Q 015614 96 DLGADYVDFELKVASNILGKQYSSHQSGTRFIVS--CNLDCETPSEEDLGYLVSRMQATGAD 155 (403)
Q Consensus 96 ~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S--~H~f~~tp~~~~l~~~~~~~~~~gad 155 (403)
+.|+|||=..+.-..+.++++... ....|++| -+ .-+.++..+.+.++.+.||+
T Consensus 171 e~GAD~vKt~~~~~~~~l~~~~~~--~~ipV~a~GGi~----~~~~~~~l~~v~~~~~aGA~ 226 (267)
T PRK07226 171 ELGADIVKTNYTGDPESFREVVEG--CPVPVVIAGGPK----TDTDREFLEMVRDAMEAGAA 226 (267)
T ss_pred HHCCCEEeeCCCCCHHHHHHHHHh--CCCCEEEEeCCC----CCCHHHHHHHHHHHHHcCCc
Confidence 999999977644323445555422 23445444 22 11356788888888888887
No 184
>PRK14982 acyl-ACP reductase; Provisional
Probab=90.16 E-value=0.36 Score=48.33 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=32.8
Q ss_pred CCCCCCeEEEEcc-hhHHHHHHHHHHH-CCC-eEEEEecCCC
Q 015614 364 SPLAGRMFVLAGA-GGAGRALAFGAKS-RGA-RVVIFDIDFG 402 (403)
Q Consensus 364 ~~~~~~~~lilGa-GGaarai~~al~~-~g~-~i~v~nR~~~ 402 (403)
..+++++++|+|| |..|+.++..|.. .|+ +|+++||+.+
T Consensus 151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~ 192 (340)
T PRK14982 151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQE 192 (340)
T ss_pred cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHH
Confidence 3577899999999 6779999999975 477 8999999854
No 185
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=90.10 E-value=5.2 Score=38.62 Aligned_cols=105 Identities=15% Similarity=0.269 Sum_probs=70.5
Q ss_pred EeecCCCCCC---CCCCHHHHHHHHHHHHHcCCcEEEEecccc-------------chHHHHHHhccCCCcEEEEeccCC
Q 015614 70 VYRPKWAGGL---YEGDEHKRLEALHLAEDLGADYVDFELKVA-------------SNILGKQYSSHQSGTRFIVSCNLD 133 (403)
Q Consensus 70 T~R~~~eGG~---~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~-------------~~~~~~l~~~~~~~~kiI~S~H~f 133 (403)
|+| +||+ +..+.+++.++.+.+-+.|+++|++=.-.. .+.++++.....+++++.+-.+.-
T Consensus 5 TLR---DG~q~~~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 5 TLR---DGGYVNNWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred Ccc---cCccccCccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence 666 5665 345789999999999999999977743221 234455543322366776654431
Q ss_pred CCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCE
Q 015614 134 CETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPI 183 (403)
Q Consensus 134 ~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~ 183 (403)
. ...+.++.+.+.|.|++++++..++.+......+........+
T Consensus 82 ~------~~~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v 125 (266)
T cd07944 82 N------DDIDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEV 125 (266)
T ss_pred C------CCHHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeE
Confidence 1 1233566677889999999999888888888888776555443
No 186
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=90.06 E-value=0.46 Score=51.78 Aligned_cols=35 Identities=34% Similarity=0.536 Sum_probs=32.3
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.+++++|+|+|.+|.++++.|++.|.+|+|+.++.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~ 226 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE 226 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 57899999999999999999999999999998764
No 187
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.04 E-value=0.38 Score=47.65 Aligned_cols=39 Identities=31% Similarity=0.351 Sum_probs=34.9
Q ss_pred CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
.+..++.++|-|+ .|.+++++.+|+..|++|++.+|+.+
T Consensus 31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~ 70 (314)
T KOG1208|consen 31 IDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEE 70 (314)
T ss_pred ccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHH
Confidence 4567899999995 99999999999999999999999864
No 188
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=89.96 E-value=1.2 Score=42.02 Aligned_cols=52 Identities=31% Similarity=0.352 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEE-EEec
Q 015614 339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDI 399 (403)
Q Consensus 339 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~-v~nR 399 (403)
+.|+..+++..+... ...+.+++++|.|-|.+++.++..|.+.|++|+ |.+.
T Consensus 11 g~Gv~~~~~~~~~~~---------~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 11 GRGVAYATREALKKL---------GIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred hHHHHHHHHHHHHhc---------CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 568888888876632 245678999999999999999999999999765 6654
No 189
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=89.82 E-value=2 Score=42.93 Aligned_cols=118 Identities=14% Similarity=0.242 Sum_probs=73.8
Q ss_pred HHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHHcccccCCHHHhhccceeEEEEeccCC---
Q 015614 259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--- 330 (403)
Q Consensus 259 ~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavNTi~~~~~~g--- 330 (403)
...+++|++..-..++. +++.+.++.+ .++...|+-|-.|... ++|+ . +.+.+++--. + =||
T Consensus 109 K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPLP~----hid~---~-~i~~~I~p~K-D-VDGl~p 178 (345)
T PLN02897 109 KACEETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQ----HLDE---S-KILNMVRLEK-D-VDGFHP 178 (345)
T ss_pred HHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-HHHhccCccc-C-ccCCCH
Confidence 46788999877555553 2566677777 4678999999999752 2221 1 1111121110 0 011
Q ss_pred ----eE-EE------EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEe
Q 015614 331 ----KL-IG------YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFD 398 (403)
Q Consensus 331 ----~l-~G------~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~n 398 (403)
++ .| .-.--.|++.-|++. +.+++||+++|+|-+.. ||.++.-|.+.|+.|+++.
T Consensus 179 ~N~G~L~~~~~~~~~~PCTp~avi~LL~~~-------------~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicH 245 (345)
T PLN02897 179 LNVGNLAMRGREPLFVSCTPKGCVELLIRS-------------GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVH 245 (345)
T ss_pred HHHHHHhcCCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEc
Confidence 12 11 112245666666543 35789999999997665 9999999999999888876
Q ss_pred c
Q 015614 399 I 399 (403)
Q Consensus 399 R 399 (403)
.
T Consensus 246 s 246 (345)
T PLN02897 246 A 246 (345)
T ss_pred C
Confidence 4
No 190
>PRK07985 oxidoreductase; Provisional
Probab=89.79 E-value=0.52 Score=45.76 Aligned_cols=35 Identities=34% Similarity=0.467 Sum_probs=30.9
Q ss_pred CCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecC
Q 015614 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~ 400 (403)
+++|+++|.|+ ||.|++++..|.+.|++|++..|+
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~ 82 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLP 82 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCC
Confidence 56789999995 889999999999999998887764
No 191
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.79 E-value=14 Score=34.51 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=71.5
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCC-Cc-EEEEeecCCCCCCCCCCHHHHHH
Q 015614 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKP-LP-VLIVYRPKWAGGLYEGDEHKRLE 89 (403)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~-~P-iI~T~R~~~eGG~~~~~~~~~~~ 89 (403)
.++..+...+.++....++...+.|..++|+.++- ....+.++.+++..+ .| +++-.=|- . +.+
T Consensus 14 ~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~---~~a~~~i~~l~~~~~~~p~~~vGaGTV-----~--~~~---- 79 (213)
T PRK06552 14 GVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTN---PFASEVIKELVELYKDDPEVLIGAGTV-----L--DAV---- 79 (213)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC---ccHHHHHHHHHHHcCCCCCeEEeeeeC-----C--CHH----
Confidence 45667889999999999999899999999999872 112346777766543 23 55432211 1 111
Q ss_pred HHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614 90 ALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (403)
Q Consensus 90 ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi 159 (403)
-++.+++.|++|+==- .+.++..+. .+..+.-+|--.| || +|+ .++.+.|+|++|+
T Consensus 80 ~~~~a~~aGA~FivsP-~~~~~v~~~---~~~~~i~~iPG~~----T~--~E~----~~A~~~Gad~vkl 135 (213)
T PRK06552 80 TARLAILAGAQFIVSP-SFNRETAKI---CNLYQIPYLPGCM----TV--TEI----VTALEAGSEIVKL 135 (213)
T ss_pred HHHHHHHcCCCEEECC-CCCHHHHHH---HHHcCCCEECCcC----CH--HHH----HHHHHcCCCEEEE
Confidence 2357788899886411 112222221 2234554554444 33 344 3344689999997
No 192
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=89.78 E-value=13 Score=35.18 Aligned_cols=132 Identities=18% Similarity=0.232 Sum_probs=77.7
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC----C--------CC---chHHHHHHhcCCCcEEEEeecCCC
Q 015614 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN----F--------QP---GKDLEIILTKKPLPVLIVYRPKWA 76 (403)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~----~--------~~---~~~l~~l~~~~~~PiI~T~R~~~e 76 (403)
.+.+.|.+.+.+++..-++.... .+|.|||=+-|=.. . ++ .+.++.+++ .++|+.+-+|..+
T Consensus 74 p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~- 150 (233)
T cd02911 74 LVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGV- 150 (233)
T ss_pred eEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCc-
Confidence 45699999999999887777644 57999997776321 0 12 123344444 5889888888642
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccc--hHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCC
Q 015614 77 GGLYEGDEHKRLEALHLAEDLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGA 154 (403)
Q Consensus 77 GG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~ga 154 (403)
+ ++..++.+.+.+.|++++.+.-.... .....+...+ .+..||++==- -+.++..+.+ ..||
T Consensus 151 ----~---~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~-~~ipVIgnGgI----~s~eda~~~l----~~Ga 214 (233)
T cd02911 151 ----D---VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS-TELFIIGNNSV----TTIESAKEMF----SYGA 214 (233)
T ss_pred ----C---cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc-CCCEEEEECCc----CCHHHHHHHH----HcCC
Confidence 2 34566777888899999988654322 0112222221 34555654211 1233333333 3577
Q ss_pred CEEEEEee
Q 015614 155 DIIKLVFS 162 (403)
Q Consensus 155 divKia~~ 162 (403)
|.|=+...
T Consensus 215 D~VmiGR~ 222 (233)
T cd02911 215 DMVSVARA 222 (233)
T ss_pred CEEEEcCC
Confidence 77766555
No 193
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=89.77 E-value=1.7 Score=42.76 Aligned_cols=123 Identities=17% Similarity=0.266 Sum_probs=73.7
Q ss_pred HHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCCe
Q 015614 259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDGK 331 (403)
Q Consensus 259 ~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g~ 331 (403)
...+++|++..-..++. +++.+.++.+ .+++..|+-|-.|+-..+- ..++.++|. +.+-..+-.- -|+
T Consensus 62 k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~-KDVDGl~~~n----~g~ 136 (299)
T PLN02516 62 KACAEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLE-KDVDGFHPLN----IGK 136 (299)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcc-cccCccCHhh----Hhh
Confidence 46789999876555542 3577777777 4678999999999642111 111111110 1111111000 012
Q ss_pred EE-E------EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614 332 LI-G------YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 332 l~-G------~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR 399 (403)
+. | .-.--.|++.-|+.. +.++.||+++|+|-+.. +|.++.-|.+.|+.|+++..
T Consensus 137 l~~~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs 199 (299)
T PLN02516 137 LAMKGREPLFLPCTPKGCLELLSRS-------------GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHS 199 (299)
T ss_pred HhcCCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCC
Confidence 21 1 112235666665543 36789999999997666 99999999999999998864
No 194
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=89.73 E-value=13 Score=34.96 Aligned_cols=192 Identities=16% Similarity=0.148 Sum_probs=99.8
Q ss_pred cCCHHHHHHHHHHHHhcCCC---EEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHH
Q 015614 19 AQSVEQVLSNMYQAKAEGAD---VVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAE 95 (403)
Q Consensus 19 ~~~~~e~~~~~~~~~~~~~D---~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~ 95 (403)
..+..++.+.++ ..|+| ++.+--|........+.+..+++..++|+++. ||.... +.-. .++
T Consensus 26 ~~d~~~~a~~~~---~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~------GGI~s~--~d~~----~~l 90 (243)
T cd04731 26 AGDPVELAKRYN---EQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVG------GGIRSL--EDAR----RLL 90 (243)
T ss_pred CCCHHHHHHHHH---HCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEe------CCCCCH--HHHH----HHH
Confidence 336666665554 46888 44443332111112345677777788999965 776533 2222 223
Q ss_pred HcCCcEEEEecccc--chHHHHHHhccCCCcEEEEeccCCCC-------------CCCHhHHHHHHHHHHHcCCCEEEEE
Q 015614 96 DLGADYVDFELKVA--SNILGKQYSSHQSGTRFIVSCNLDCE-------------TPSEEDLGYLVSRMQATGADIIKLV 160 (403)
Q Consensus 96 ~~g~~yvDiEl~~~--~~~~~~l~~~~~~~~kiI~S~H~f~~-------------tp~~~~l~~~~~~~~~~gadivKia 160 (403)
..|++.|.+-.... .+++.++...- +.-++++|.-...+ ..+..+..+..+++.+.|+|.+=+-
T Consensus 91 ~~G~~~v~ig~~~~~~p~~~~~i~~~~-~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~ 169 (243)
T cd04731 91 RAGADKVSINSAAVENPELIREIAKRF-GSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLT 169 (243)
T ss_pred HcCCceEEECchhhhChHHHHHHHHHc-CCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEe
Confidence 46899988865443 34555554321 22367777531100 1122446777788889999976553
Q ss_pred eecC----CHhHHHHHHHHhccCCCCEEEEE-cCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhh
Q 015614 161 FSVN----DITEIARIFQLLSHCQVPIIAYS-VGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTY 229 (403)
Q Consensus 161 ~~~~----~~~D~~~ll~~~~~~~~p~i~~~-MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~ 229 (403)
.... ..-+...+.++....+.|+|+.+ ......+-+++.. +. .....+..+--.|+++++++++.+
T Consensus 170 ~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~--~g-~dgv~vg~al~~~~~~~~~~~~~~ 240 (243)
T cd04731 170 SMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEE--GG-ADAALAASIFHFGEYTIAELKEYL 240 (243)
T ss_pred ccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHh--CC-CCEEEEeHHHHcCCCCHHHHHHHH
Confidence 2222 11122233333444578887653 3333345555432 11 122223333447888888877654
No 195
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=89.65 E-value=0.52 Score=52.21 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=32.2
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
..+++++|||+|.||.++++.|++.|.+|+|+.+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 45789999999999999999999999999999874
No 196
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=89.57 E-value=0.46 Score=48.82 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=32.3
Q ss_pred CCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 366 ~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
+++|+++|.|+ ||.|++++..|.+.|++|.+++|+.+
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~ 213 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSD 213 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46889999996 88899999999999999988888643
No 197
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=89.51 E-value=0.74 Score=45.55 Aligned_cols=38 Identities=16% Similarity=0.104 Sum_probs=34.5
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
.++++++.|+|-|..|++++.-|...|++|+.++|+.+
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~ 170 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRK 170 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46789999999999999999999999999999998753
No 198
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=89.45 E-value=0.52 Score=45.24 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=30.2
Q ss_pred CeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
..++|+|+|.++.++++.|++.|.+|.|+.|..
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~ 58 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL 58 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence 469999999999999999999999999998864
No 199
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.39 E-value=2 Score=42.14 Aligned_cols=123 Identities=13% Similarity=0.234 Sum_probs=73.2
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
...++++|++.....++. +++.+.++.+ .++...|+-|-.|....+ ...++.++|. +.+-..+-+- -|
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~-KDVDGl~~~N----~g 127 (293)
T PRK14185 53 VKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYR-KDVDGFHPIN----VG 127 (293)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc-cCcCCCCHhh----HH
Confidence 457889999887666553 3566666666 457899999999975221 1111111110 1111111000 01
Q ss_pred eEE-E----EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHC----CCeEEEEe
Q 015614 331 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSR----GARVVIFD 398 (403)
Q Consensus 331 ~l~-G----~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~----g~~i~v~n 398 (403)
+++ | .-.--.|++.-|+.. +.+++||+++|+|.+.. +|.++.-|.+. ++.|+++.
T Consensus 128 ~l~~~~~~~~PcTp~av~~lL~~~-------------~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvch 192 (293)
T PRK14185 128 RMSIGLPCFVSATPNGILELLKRY-------------HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCH 192 (293)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEec
Confidence 111 1 112345677766543 25789999999997666 99999999887 57888875
No 200
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=89.11 E-value=0.54 Score=48.82 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=35.6
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
..++||+|+|||+|-+|--++-.|.+.|.+|+++-|++.
T Consensus 171 ~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 171 EDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred cccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 457899999999999999999999999999999999863
No 201
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=89.05 E-value=28 Score=35.30 Aligned_cols=109 Identities=15% Similarity=0.100 Sum_probs=69.4
Q ss_pred HHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEE-EEeccccc------hHH---HHHHhccC---CCc
Q 015614 58 IILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV-DFELKVAS------NIL---GKQYSSHQ---SGT 124 (403)
Q Consensus 58 ~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yv-DiEl~~~~------~~~---~~l~~~~~---~~~ 124 (403)
++....+.|++.|.=.+ ++|. +.++..++++..++.|+|.| |.|..-.. +.. .+.+...+ ++.
T Consensus 123 ~~~gv~~rPli~Ti~kp-~~gl---d~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~ 198 (367)
T cd08205 123 RLLGVHDRPLLGTIIKP-SIGL---SPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRK 198 (367)
T ss_pred HHhCCCCCCeeeeeeCC-CCCC---CHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCc
Confidence 33334588999997653 4454 77888899999999999998 66654322 111 11121112 343
Q ss_pred EEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHH
Q 015614 125 RFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQ 174 (403)
Q Consensus 125 kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~ 174 (403)
++++.-. |-+.+|+.+..+.+++.|+|.+=+....--......+.+
T Consensus 199 ~~y~~ni----t~~~~e~i~~a~~a~~~Gad~vmv~~~~~g~~~~~~l~~ 244 (367)
T cd08205 199 TLYAPNI----TGDPDELRRRADRAVEAGANALLINPNLVGLDALRALAE 244 (367)
T ss_pred ceEEEEc----CCCHHHHHHHHHHHHHcCCCEEEEecccccccHHHHHHh
Confidence 4433322 233589999999999999999888877666555555543
No 202
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=89.05 E-value=0.62 Score=48.66 Aligned_cols=36 Identities=36% Similarity=0.407 Sum_probs=32.4
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
..+++++|+|+|.+|.++++.|++.|.+|+|+.+..
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 357899999999999999999999999999998764
No 203
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=88.94 E-value=2.4 Score=42.74 Aligned_cols=123 Identities=18% Similarity=0.247 Sum_probs=73.6
Q ss_pred HHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHHH--cccccCCHHHhhccceeEEEEeccCCe
Q 015614 259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDGK 331 (403)
Q Consensus 259 ~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g~ 331 (403)
...+++|++..-..++. +++.+.++.+ .++...|+-|-.|+...+- ..++.++|. +.+-..+-.- -|+
T Consensus 126 K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~-KDVDGl~p~N----~G~ 200 (364)
T PLN02616 126 KACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIE-KDVDGFHPLN----IGR 200 (364)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcccCChhh----hHH
Confidence 56789999876444443 2566677777 4577999999999852210 011111110 1111111000 011
Q ss_pred EE-E------EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614 332 LI-G------YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 332 l~-G------~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR 399 (403)
+. | .-.--.|++.-|+.. +.+++||+++|+|-+.. +|.++.-|.+.|+.|+++..
T Consensus 201 L~~g~~~~~f~PCTp~avielL~~y-------------~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs 263 (364)
T PLN02616 201 LAMRGREPLFVPCTPKGCIELLHRY-------------NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS 263 (364)
T ss_pred HhcCCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCC
Confidence 21 1 112246777766543 25789999999997665 99999999999999988864
No 204
>PLN02477 glutamate dehydrogenase
Probab=88.91 E-value=1.4 Score=45.37 Aligned_cols=54 Identities=30% Similarity=0.486 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEE-EEecC
Q 015614 338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDID 400 (403)
Q Consensus 338 D~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~-v~nR~ 400 (403)
-+.|...+++..+... +..++|++++|.|-|.+++.++..|.+.|++|+ |.+.+
T Consensus 185 Tg~Gv~~~~~~~~~~~---------g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~ 239 (410)
T PLN02477 185 TGRGVVFATEALLAEH---------GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT 239 (410)
T ss_pred chHHHHHHHHHHHHHc---------CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence 4578888888877632 246789999999999999999999999999766 66543
No 205
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=88.90 E-value=5.3 Score=36.41 Aligned_cols=80 Identities=15% Similarity=0.257 Sum_probs=51.0
Q ss_pred EecccCCHHHHHHHHHHHHhcCCCEEEEE-ec--CCCCCCC-chHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHH
Q 015614 15 APLMAQSVEQVLSNMYQAKAEGADVVEIR-LD--CINNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA 90 (403)
Q Consensus 15 v~l~~~~~~e~~~~~~~~~~~~~D~vElR-lD--~l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l 90 (403)
.+|...|.+....+++.+...|+|.||+- .| ..++... .+.++.+++..+.|+.+.+... +.+ ++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~--------~~~---~~ 71 (210)
T TIGR01163 3 PSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVE--------NPD---RY 71 (210)
T ss_pred chhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeC--------CHH---HH
Confidence 46667777778888888888899999994 23 2233222 3567778766677864444432 122 23
Q ss_pred HHHHHHcCCcEEEEe
Q 015614 91 LHLAEDLGADYVDFE 105 (403)
Q Consensus 91 l~~~~~~g~~yvDiE 105 (403)
++.+.+.|++.|=+-
T Consensus 72 ~~~~~~~gadgv~vh 86 (210)
T TIGR01163 72 IEDFAEAGADIITVH 86 (210)
T ss_pred HHHHHHcCCCEEEEc
Confidence 566778888875543
No 206
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=88.86 E-value=15 Score=37.34 Aligned_cols=140 Identities=16% Similarity=0.168 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEE-eecCCCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 015614 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIV-YRPKWAGGLYEGDEHKRLEALHLAEDLGADY 101 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T-~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~y 101 (403)
++-+.-++...+.|+|.||+-.=...+ .+.+.+..+.+....+.+.+ .|.. .+-++.+.+.|+++
T Consensus 26 e~k~~ia~~L~~~GV~~IE~G~p~~~~-~~~e~i~~i~~~~~~~~i~~~~r~~-------------~~di~~a~~~g~~~ 91 (378)
T PRK11858 26 EEKLAIARMLDEIGVDQIEAGFPAVSE-DEKEAIKAIAKLGLNASILALNRAV-------------KSDIDASIDCGVDA 91 (378)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCcCh-HHHHHHHHHHhcCCCeEEEEEcccC-------------HHHHHHHHhCCcCE
Confidence 333333444455799999985322221 11234555554322233333 3321 12256778889999
Q ss_pred EEEeccccch------------HHH---HHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC-
Q 015614 102 VDFELKVASN------------ILG---KQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN- 164 (403)
Q Consensus 102 vDiEl~~~~~------------~~~---~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~- 164 (403)
|.+-+...+- .++ +.+ .++..+..+.++.=+...+ +.+.+.++++.+.+.|+|.+-++=+.-
T Consensus 92 i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~-~~~~l~~~~~~~~~~Ga~~I~l~DT~G~ 170 (378)
T PRK11858 92 VHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRT-DLDFLIEFAKAAEEAGADRVRFCDTVGI 170 (378)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCC-CHHHHHHHHHHHHhCCCCEEEEeccCCC
Confidence 9987665431 111 122 2344566777775454444 367899999999999999988885553
Q ss_pred -CHhHHHHHHHHhc
Q 015614 165 -DITEIARIFQLLS 177 (403)
Q Consensus 165 -~~~D~~~ll~~~~ 177 (403)
++.++.++.+.+.
T Consensus 171 ~~P~~v~~lv~~l~ 184 (378)
T PRK11858 171 LDPFTMYELVKELV 184 (378)
T ss_pred CCHHHHHHHHHHHH
Confidence 4778877776653
No 207
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=88.78 E-value=4.5 Score=40.39 Aligned_cols=90 Identities=12% Similarity=0.157 Sum_probs=65.6
Q ss_pred EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC------------CC---chHHHHHHhcCCCcEEEEeecCCCC
Q 015614 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF------------QP---GKDLEIILTKKPLPVLIVYRPKWAG 77 (403)
Q Consensus 13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~------------~~---~~~l~~l~~~~~~PiI~T~R~~~eG 77 (403)
+.+.|.+.+.+++..-++.+.+.|+|.|||-..+-... ++ .+.++.+++..+.|+.+-+|-..++
T Consensus 67 ~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~ 146 (333)
T PRK11815 67 VALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDD 146 (333)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCC
Confidence 57999999999999888888788999999988764210 11 1344556666688888877854443
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015614 78 GLYEGDEHKRLEALHLAEDLGADYVDFE 105 (403)
Q Consensus 78 G~~~~~~~~~~~ll~~~~~~g~~yvDiE 105 (403)
. .+.++..++.+.+.+.|++++.+-
T Consensus 147 ~---~t~~~~~~~~~~l~~aG~d~i~vh 171 (333)
T PRK11815 147 Q---DSYEFLCDFVDTVAEAGCDTFIVH 171 (333)
T ss_pred C---cCHHHHHHHHHHHHHhCCCEEEEc
Confidence 2 234566788888889999998876
No 208
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=88.77 E-value=34 Score=35.90 Aligned_cols=205 Identities=15% Similarity=0.120 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHhcCCCEEEE----EecC---CCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHHHH
Q 015614 23 EQVLSNMYQAKAEGADVVEI----RLDC---INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLA 94 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vEl----RlD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~ 94 (403)
++++.-+...-..|.+.+|. ..|- +...+|.+.+..+++.. +.|+-.=+|..+==|..+.+++-...+++.+
T Consensus 35 ~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a 114 (468)
T PRK12581 35 EDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLS 114 (468)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHH
Confidence 44444444445569999999 8883 22335677888888765 5677777774433454455566666678999
Q ss_pred HHcCCcEEEEeccc--cchHHHHHHhccCC--CcEEEEeccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--CH
Q 015614 95 EDLGADYVDFELKV--ASNILGKQYSSHQS--GTRFIVSCNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--DI 166 (403)
Q Consensus 95 ~~~g~~yvDiEl~~--~~~~~~~l~~~~~~--~~kiI~S~H~f~~tp--~~~~l~~~~~~~~~~gadivKia~~~~--~~ 166 (403)
.+.|++.+=|=-.+ .+.....+...++. .+.+-++|-. .| +.+.+.+..+++.+.|||.+-|+=|+- ++
T Consensus 115 ~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~---sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P 191 (468)
T PRK12581 115 AQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTT---SPVHTLNYYLSLVKELVEMGADSICIKDMAGILTP 191 (468)
T ss_pred HHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEe---CCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCH
Confidence 99998887663222 22222222222222 3334555532 44 457789999999999999988887764 57
Q ss_pred hHHHHHHHHhccC-CCCEEEE--EcCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614 167 TEIARIFQLLSHC-QVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (403)
Q Consensus 167 ~D~~~ll~~~~~~-~~p~i~~--~MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~ 230 (403)
.++..+.+.+.+. +.|+-.= ++--.+..+-+..-.-|....-+++.. +.-.||++.+++...++
T Consensus 192 ~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~g~gagN~~tE~lv~~L~ 259 (468)
T PRK12581 192 KAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPFSEGTSQPATESMYLALK 259 (468)
T ss_pred HHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccccCCCcCChhHHHHHHHHH
Confidence 8888887776543 4453211 112222233333333344333333332 12347999988877665
No 209
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=88.76 E-value=0.42 Score=46.86 Aligned_cols=36 Identities=33% Similarity=0.437 Sum_probs=32.4
Q ss_pred CCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614 368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFGT 403 (403)
Q Consensus 368 ~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~k 403 (403)
|+=++|-|| .|.||+-+..|++.|.+|++++||.+|
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~K 85 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEK 85 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHH
Confidence 567888896 788999999999999999999999875
No 210
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=88.69 E-value=0.56 Score=44.08 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=30.3
Q ss_pred CeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
..++|+|||.++..++|.|++.|.+|.|+.|+.
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 459999999999999999999999999998864
No 211
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=88.67 E-value=8.5 Score=35.92 Aligned_cols=175 Identities=13% Similarity=0.120 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE--E
Q 015614 83 DEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL--V 160 (403)
Q Consensus 83 ~~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi--a 160 (403)
+.+.+..+.+++.++|++.=.=|+..+-....+++...+-+--+|++-- .++-++......++-|=| |
T Consensus 49 tk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~----------a~~dF~gidTs~pn~VVigla 118 (262)
T KOG3040|consen 49 TKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDD----------ALEDFDGIDTSDPNCVVIGLA 118 (262)
T ss_pred cchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEccc----------chhhCCCccCCCCCeEEEecC
Confidence 4567888999999999755444555554444445422222333555432 222222222223444444 4
Q ss_pred eecCCHhHHHHHHHHhccC-CCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhccccccce
Q 015614 161 FSVNDITEIARIFQLLSHC-QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTK 239 (403)
Q Consensus 161 ~~~~~~~D~~~ll~~~~~~-~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~~~~~~~~ 239 (403)
-..-+++.+.+.++++.+. +.++|+++-|..-+ |.-++.+|+ | .....++|. . -.
T Consensus 119 pe~F~y~~ln~AFrvL~e~~k~~LIai~kgryyk--r~~Gl~lgp-------------G-----~fv~aLeya---t-g~ 174 (262)
T KOG3040|consen 119 PEGFSYQRLNRAFRVLLEMKKPLLIAIGKGRYYK--RVDGLCLGP-------------G-----PFVAALEYA---T-GC 174 (262)
T ss_pred cccccHHHHHHHHHHHHcCCCCeEEEecCceeee--eccccccCc-------------h-----HHHHHhhhc---c-Cc
Confidence 4444566777778887666 46788888876543 444444333 3 112233332 1 12
Q ss_pred EEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCcccHHHHHHHhcCCCCceEEec
Q 015614 240 VFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVG 296 (403)
Q Consensus 240 ~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~~~~~~~~~~~~~~~~~G~~VT 296 (403)
..-++|+| ||+++..+++.+|++..-..+--||+.+=+-+..+.|.+|+-|-
T Consensus 175 ~a~vvGKP-----~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVk 226 (262)
T KOG3040|consen 175 EATVVGKP-----SPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVK 226 (262)
T ss_pred eEEEecCC-----CHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEee
Confidence 44588998 99999999999998754222211343333333344566676553
No 212
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=88.65 E-value=17 Score=33.95 Aligned_cols=197 Identities=18% Similarity=0.250 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 015614 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADY 101 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~y 101 (403)
++.+.-++...+.|.|.||+=+-...+ ++.+.++.+++.. ..++..-+|. .++.-...++.+...|++.
T Consensus 14 ~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 14 EEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNARLQALCRA---------NEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSSEEEEEEES---------CHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhcccccceeeee---------hHHHHHHHHHhhHhccCCE
Confidence 333333444455799999998333332 2234566655433 3455555552 2222222356667789999
Q ss_pred EEEeccccch---------------HHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC-
Q 015614 102 VDFELKVASN---------------ILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN- 164 (403)
Q Consensus 102 vDiEl~~~~~---------------~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~- 164 (403)
+.+-....+. ...+.. ..+..+.++-.+.=+...+ +.+++.+.++++.++|+|++-++=+.-
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~i~l~Dt~G~ 162 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRT-DPEELLELAEALAEAGADIIYLADTVGI 162 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGS-SHHHHHHHHHHHHHHT-SEEEEEETTS-
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccc-cHHHHHHHHHHHHHcCCeEEEeeCccCC
Confidence 9987766541 111222 3345567776665443333 457899999999999999998885553
Q ss_pred -CHhHHHHHHHHhccC-C-CCEEEEEcCccc--hhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614 165 -DITEIARIFQLLSHC-Q-VPIIAYSVGERG--LVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (403)
Q Consensus 165 -~~~D~~~ll~~~~~~-~-~p~i~~~MG~~G--~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~ 230 (403)
++.++..+++.+.+. + .|+-.=+=-..| ...-+..-..|....=+++.+ +-..|+.+++++...++
T Consensus 163 ~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~~~Gn~~le~lv~~L~ 234 (237)
T PF00682_consen 163 MTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGERAGNAPLEELVAALE 234 (237)
T ss_dssp S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSSTTSB-BHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCCCCCCccHHHHHHHHh
Confidence 588888888776543 3 333221111222 222222222344333333322 24589999998876654
No 213
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=88.63 E-value=0.53 Score=51.32 Aligned_cols=32 Identities=38% Similarity=0.581 Sum_probs=30.3
Q ss_pred CeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
..|+|||+|-+|.+++|.|++.|.+|+|+.|.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~ 292 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEAD 292 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecC
Confidence 57999999999999999999999999999986
No 214
>PRK14851 hypothetical protein; Provisional
Probab=88.59 E-value=0.5 Score=51.67 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=31.5
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~ 400 (403)
+++++|+|+|+||.|..++..|+..|+ +++|++-+
T Consensus 41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D 76 (679)
T PRK14851 41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD 76 (679)
T ss_pred HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 346899999999999999999999999 99998754
No 215
>PRK06128 oxidoreductase; Provisional
Probab=88.42 E-value=0.72 Score=44.80 Aligned_cols=35 Identities=34% Similarity=0.539 Sum_probs=30.5
Q ss_pred CCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecC
Q 015614 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~ 400 (403)
+++|++||.|+ ||.|++++..|.+.|++|.+..|+
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 56799999995 899999999999999988877664
No 216
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=88.40 E-value=16 Score=35.18 Aligned_cols=191 Identities=14% Similarity=0.135 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCC--chHHHHHHhcCCCcEEEEe-ecCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015614 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQP--GKDLEIILTKKPLPVLIVY-RPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~--~~~l~~l~~~~~~PiI~T~-R~~~eGG~~~~~~~~~~~ll~~~~~~g~ 99 (403)
++-+.-++...+.|+|.||+=- +...+ .+.++.+.+....+-++++ |.. . +=++.+.+.|+
T Consensus 22 ~~k~~i~~~L~~~Gv~~IEvG~---P~~~~~~~~~~~~l~~~~~~~~v~~~~r~~---------~----~di~~a~~~g~ 85 (262)
T cd07948 22 EDKIEIAKALDAFGVDYIELTS---PAASPQSRADCEAIAKLGLKAKILTHIRCH---------M----DDARIAVETGV 85 (262)
T ss_pred HHHHHHHHHHHHcCCCEEEEEC---CCCCHHHHHHHHHHHhCCCCCcEEEEecCC---------H----HHHHHHHHcCc
Confidence 3333334444567999999963 22222 2233444332222434443 422 1 12567778899
Q ss_pred cEEEEeccccc------------hHHHHH---H-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015614 100 DYVDFELKVAS------------NILGKQ---Y-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV 163 (403)
Q Consensus 100 ~yvDiEl~~~~------------~~~~~l---~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~ 163 (403)
+.|.+-+...+ +.++.+ + .++..+.++-++.=+-..+| .+.+.++++++.+.|+|.+-++=+.
T Consensus 86 ~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~-~~~l~~~~~~~~~~g~~~i~l~Dt~ 164 (262)
T cd07948 86 DGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSD-LVDLLRVYRAVDKLGVNRVGIADTV 164 (262)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCC-HHHHHHHHHHHHHcCCCEEEECCcC
Confidence 99988664322 112212 2 23445677777776644555 5779999999999999988777554
Q ss_pred C--CHhHHHHHHHHhccC-CCCEEEEEcCc--cchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614 164 N--DITEIARIFQLLSHC-QVPIIAYSVGE--RGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (403)
Q Consensus 164 ~--~~~D~~~ll~~~~~~-~~p~i~~~MG~--~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~ 230 (403)
- ++.++.++.+.+.+. +.|+-.=+=-. .+...-+..-..|..+.=+++.+ +--.|+.+++++...++
T Consensus 165 G~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlGeraGn~~~e~~~~~l~ 237 (262)
T cd07948 165 GIATPRQVYELVRTLRGVVSCDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLGIGERNGITPLGGLIARMY 237 (262)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccccccCCccHHHHHHHHH
Confidence 3 578888887775543 44442211111 12222222222233332233322 23478888887776654
No 217
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=88.22 E-value=0.68 Score=48.17 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=30.4
Q ss_pred CeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
..|+|+|+|.||.+++..|++.|.+|.|+.|..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 479999999999999999999999999998864
No 218
>PRK06436 glycerate dehydrogenase; Provisional
Probab=88.19 E-value=0.9 Score=44.79 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=33.7
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.+.||++.|+|-|..|++++.-|+..|++|+.++|+.
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~ 155 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSY 155 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 4679999999999999999998888899999999974
No 219
>PRK13984 putative oxidoreductase; Provisional
Probab=88.15 E-value=0.74 Score=49.60 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=32.4
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
..+++++|+|+|.+|.++++.|.++|.+|+|+.+..
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~ 316 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLS 316 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 357899999999999999999999999999998753
No 220
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.15 E-value=4.1 Score=40.99 Aligned_cols=87 Identities=20% Similarity=0.217 Sum_probs=55.2
Q ss_pred cccCCHHHHHHH----HHHHHhcCCCEEEEEecC-------CCC---C-CC-------------chHHHHHHhcCC----
Q 015614 17 LMAQSVEQVLSN----MYQAKAEGADVVEIRLDC-------INN---F-QP-------------GKDLEIILTKKP---- 64 (403)
Q Consensus 17 l~~~~~~e~~~~----~~~~~~~~~D~vElRlD~-------l~~---~-~~-------------~~~l~~l~~~~~---- 64 (403)
++..+++++..+ ++.+.+.|.|.|||-.-. |.+ . ++ .+.+..+|+..+
T Consensus 134 mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~ 213 (353)
T cd04735 134 LTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHAD 213 (353)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccC
Confidence 344444444333 445567899999997642 111 1 11 145556666655
Q ss_pred CcEEEEeecCC----CCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015614 65 LPVLIVYRPKW----AGGLYEGDEHKRLEALHLAEDLGADYVDFEL 106 (403)
Q Consensus 65 ~PiI~T~R~~~----eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl 106 (403)
.++.+.+|-.. +||. +.++..++++.+.+.|+|||+|-.
T Consensus 214 ~~~~v~~R~s~~~~~~~g~---~~ee~~~i~~~L~~~GvD~I~Vs~ 256 (353)
T cd04735 214 KDFILGYRFSPEEPEEPGI---RMEDTLALVDKLADKGLDYLHISL 256 (353)
T ss_pred CCceEEEEECcccccCCCC---CHHHHHHHHHHHHHcCCCEEEecc
Confidence 67888888543 3342 457788899999999999999864
No 221
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=87.92 E-value=39 Score=35.65 Aligned_cols=32 Identities=31% Similarity=0.327 Sum_probs=28.6
Q ss_pred CCeEEEEcchhHHHHHHHHHHHCCCeEEEEec
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR 399 (403)
...++|||+|.+|.++|..|+++|.++.|+.+
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 46899999999999999999999998887754
No 222
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.90 E-value=12 Score=34.87 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=71.9
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHH
Q 015614 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL 91 (403)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 91 (403)
.++..+...+.++....++...+.|.++||+-+. ..+..+.++.+++..+- +++-.=+. .++ +-.
T Consensus 16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~---~~~~~~~I~~l~~~~p~-~~IGAGTV-------l~~----~~a 80 (212)
T PRK05718 16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLR---TPAALEAIRLIAKEVPE-ALIGAGTV-------LNP----EQL 80 (212)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecC---CccHHHHHHHHHHHCCC-CEEEEeec-------cCH----HHH
Confidence 4566789999999999998888889999999943 22223466677665442 32221111 122 335
Q ss_pred HHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614 92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (403)
Q Consensus 92 ~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi 159 (403)
+.+++.|++|+=.--.. ++.++.. ++.+.-+|=.. -||+ | ..++.++|+|++|+
T Consensus 81 ~~a~~aGA~FivsP~~~-~~vi~~a---~~~~i~~iPG~----~Tpt--E----i~~a~~~Ga~~vKl 134 (212)
T PRK05718 81 AQAIEAGAQFIVSPGLT-PPLLKAA---QEGPIPLIPGV----STPS--E----LMLGMELGLRTFKF 134 (212)
T ss_pred HHHHHcCCCEEECCCCC-HHHHHHH---HHcCCCEeCCC----CCHH--H----HHHHHHCCCCEEEE
Confidence 67889999997654332 2333322 22333333121 2442 2 45577889999999
No 223
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=87.84 E-value=0.56 Score=49.44 Aligned_cols=36 Identities=36% Similarity=0.289 Sum_probs=32.1
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
.+.+++|+|+|.+|++++..++.+|+.|++++++.+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 357999999999999999999999999999888653
No 224
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=87.80 E-value=14 Score=33.22 Aligned_cols=134 Identities=22% Similarity=0.247 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCCch---HHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015614 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGK---DLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~---~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~ 99 (403)
+++...++.+++.|+++|-+|.=-+...+..+ .+..+.+..+.|+|+.-|. +.+.+.++
T Consensus 12 ~~~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~liin~~~------------------~la~~~~~ 73 (180)
T PF02581_consen 12 DDFLEQLEAALAAGVDLVQLREKDLSDEELLELARRLAELCQKYGVPLIINDRV------------------DLALELGA 73 (180)
T ss_dssp CHHHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEEES-H------------------HHHHHCT-
T ss_pred chHHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEEEecCCH------------------HHHHhcCC
Confidence 56777788888999999999986554322112 2333334567899987432 23566889
Q ss_pred cEEEEeccccc-hHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec--CCHh-----HHHH
Q 015614 100 DYVDFELKVAS-NILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV--NDIT-----EIAR 171 (403)
Q Consensus 100 ~yvDiEl~~~~-~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~--~~~~-----D~~~ 171 (403)
+.|=+.....+ ...+.+ ...+..|=.|.|+ .+| +.++.+.|+|.+=+-..- .|.. ....
T Consensus 74 dGvHl~~~~~~~~~~r~~---~~~~~~ig~S~h~------~~e----~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~ 140 (180)
T PF02581_consen 74 DGVHLGQSDLPPAEARKL---LGPDKIIGASCHS------LEE----AREAEELGADYVFLGPVFPTSSKPGAPPLGLDG 140 (180)
T ss_dssp SEEEEBTTSSSHHHHHHH---HTTTSEEEEEESS------HHH----HHHHHHCTTSEEEEETSS--SSSSS-TTCHHHH
T ss_pred CEEEecccccchHHhhhh---cccceEEEeecCc------HHH----HHHhhhcCCCEEEECCccCCCCCccccccCHHH
Confidence 99888665432 122222 2345566679997 233 566678899988765431 2222 3344
Q ss_pred HHHHhccCCCCEEEEE
Q 015614 172 IFQLLSHCQVPIIAYS 187 (403)
Q Consensus 172 ll~~~~~~~~p~i~~~ 187 (403)
+.++....++|+++++
T Consensus 141 l~~~~~~~~~pv~AlG 156 (180)
T PF02581_consen 141 LREIARASPIPVYALG 156 (180)
T ss_dssp HHHHHHHTSSCEEEES
T ss_pred HHHHHHhCCCCEEEEc
Confidence 4455555678987764
No 225
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=87.79 E-value=5.4 Score=39.90 Aligned_cols=76 Identities=14% Similarity=0.009 Sum_probs=48.3
Q ss_pred HHHHHhcCCCEEEEEecC--C--------CCC-CC-------------chHHHHHHhcCCC-cEEEEeecC-CC---CCC
Q 015614 29 MYQAKAEGADVVEIRLDC--I--------NNF-QP-------------GKDLEIILTKKPL-PVLIVYRPK-WA---GGL 79 (403)
Q Consensus 29 ~~~~~~~~~D~vElRlD~--l--------~~~-~~-------------~~~l~~l~~~~~~-PiI~T~R~~-~e---GG~ 79 (403)
+..+.+.|.|.|||-.-+ | .+. ++ .+.+..+|+.... | +++|-. .| ||.
T Consensus 158 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~--v~vRis~~~~~~~~~ 235 (338)
T cd02933 158 ARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADR--VGIRLSPFGTFNDMG 235 (338)
T ss_pred HHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCc--eEEEECccccCCCCC
Confidence 445566899999998765 1 111 11 1455566665543 5 566643 22 233
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015614 80 YEGDEHKRLEALHLAEDLGADYVDFEL 106 (403)
Q Consensus 80 ~~~~~~~~~~ll~~~~~~g~~yvDiEl 106 (403)
+..+.++..++.+.+.+.|+|||+|-.
T Consensus 236 ~~~~~ee~~~~~~~l~~~g~d~i~vs~ 262 (338)
T cd02933 236 DSDPEATFSYLAKELNKRGLAYLHLVE 262 (338)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEec
Confidence 334668888999999999999999843
No 226
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=87.68 E-value=0.68 Score=46.84 Aligned_cols=32 Identities=38% Similarity=0.625 Sum_probs=30.2
Q ss_pred eEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 370 ~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.++|+|||-++.|.+|+|++.|-+|.|+.|+.
T Consensus 47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 47 DVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred cEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 49999999999999999999999999999985
No 227
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=87.68 E-value=0.64 Score=46.04 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=31.4
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG 402 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~ 402 (403)
.+++++|.|+|+.+.+++..++.+|+ +|+++.|+.+
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~ 205 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPR 205 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHH
Confidence 47899999999999999988888999 7888887654
No 228
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=87.66 E-value=23 Score=33.57 Aligned_cols=117 Identities=13% Similarity=0.039 Sum_probs=64.9
Q ss_pred HHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccch----------------HHHHHH-
Q 015614 55 DLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASN----------------ILGKQY- 117 (403)
Q Consensus 55 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~----------------~~~~l~- 117 (403)
++..+. .+.|+|+.+|.. +.+++.+..+...+ ++++|||-...+.. .+.+++
T Consensus 60 e~~~~~--~~~~vivnv~~~--------~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~ 128 (231)
T TIGR00736 60 QIKKAE--SRALVSVNVRFV--------DLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLT 128 (231)
T ss_pred HHHHHh--hcCCEEEEEecC--------CHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHH
Confidence 444442 467999999953 66788888777755 69999998777553 122222
Q ss_pred hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH--hHHHHHHHHhccC-CCCEEE
Q 015614 118 SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI--TEIARIFQLLSHC-QVPIIA 185 (403)
Q Consensus 118 ~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~--~D~~~ll~~~~~~-~~p~i~ 185 (403)
..+..+..|.+=.-- .. +..+..++.+.+.+.|+|.+-+-.+-... .|...+-++.... ++|+|+
T Consensus 129 av~~~~~PVsvKiR~--~~-~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIg 196 (231)
T TIGR00736 129 KMKELNKPIFVKIRG--NC-IPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIG 196 (231)
T ss_pred HHHcCCCcEEEEeCC--CC-CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEE
Confidence 222112222221110 00 12345677777788888877664433221 3444444444444 366654
No 229
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=87.60 E-value=6.8 Score=36.37 Aligned_cols=121 Identities=19% Similarity=0.249 Sum_probs=70.0
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHH
Q 015614 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL 91 (403)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 91 (403)
.++..+...+.++....++...+.|..++|+.++- .+..+.++.+++..+ -+++-.=+ - .+.+ -.
T Consensus 9 ~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t---~~a~~~i~~l~~~~~-~~~vGAGT-----V--l~~~----~a 73 (204)
T TIGR01182 9 KIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRT---PVALDAIRLLRKEVP-DALIGAGT-----V--LNPE----QL 73 (204)
T ss_pred CEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCC---ccHHHHHHHHHHHCC-CCEEEEEe-----C--CCHH----HH
Confidence 34566889999999999998899999999998853 111245666665443 13332111 1 1222 24
Q ss_pred HHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe
Q 015614 92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF 161 (403)
Q Consensus 92 ~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~ 161 (403)
+.+++.|++|+ +-=.+.++..+. .++.+.-+|-- --||+ | +.++.++|+|++|+--
T Consensus 74 ~~a~~aGA~Fi-vsP~~~~~v~~~---~~~~~i~~iPG----~~Tpt--E----i~~A~~~Ga~~vKlFP 129 (204)
T TIGR01182 74 RQAVDAGAQFI-VSPGLTPELAKH---AQDHGIPIIPG----VATPS--E----IMLALELGITALKLFP 129 (204)
T ss_pred HHHHHcCCCEE-ECCCCCHHHHHH---HHHcCCcEECC----CCCHH--H----HHHHHHCCCCEEEECC
Confidence 56788899998 222222333222 22233333321 23553 3 3456678999999854
No 230
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=87.60 E-value=0.72 Score=46.07 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=33.2
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFGT 403 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~k 403 (403)
.|++++|.|+||.+..++.-++.+|++|+.+.|+.+|
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K 202 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEK 202 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHH
Confidence 4899999999999998888888899999999998764
No 231
>PLN02985 squalene monooxygenase
Probab=87.25 E-value=1.1 Score=47.60 Aligned_cols=34 Identities=32% Similarity=0.573 Sum_probs=31.1
Q ss_pred CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
...++|+|||-+|.+++.+|++.|.+|.|+.|+.
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 3579999999999999999999999999999864
No 232
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=87.24 E-value=25 Score=32.74 Aligned_cols=141 Identities=16% Similarity=0.170 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHh---cCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHH
Q 015614 20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILT---KKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAED 96 (403)
Q Consensus 20 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~ 96 (403)
.+.+++.+..+++.+.+...|=+ .| ..+...++ .++.. +.|+=.=+.|.. +-+.+..=.+.+++
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv--------~p-~~v~~a~~~l~~~~v~-v~tVigFP~G~~---~~~~K~~E~~~Av~ 81 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCV--------NP-SYVPLAKELLKGTEVR-ICTVVGFPLGAS---TTDVKLYETKEAIK 81 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEe--------CH-HHHHHHHHHcCCCCCe-EEEEeCCCCCCC---cHHHHHHHHHHHHH
Confidence 34677777777777666655543 22 23433332 23333 444433334332 23455555678999
Q ss_pred cCCcEEEEeccccc----------hHHHHHHh-ccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE--e--
Q 015614 97 LGADYVDFELKVAS----------NILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV--F-- 161 (403)
Q Consensus 97 ~g~~yvDiEl~~~~----------~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia--~-- 161 (403)
.|++-||+=++... +.+.++.. .+.-..|+|+-... -+.+++....+-+.+.|||++|-- +
T Consensus 82 ~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~----L~~~ei~~a~~ia~eaGADfvKTsTGf~~ 157 (211)
T TIGR00126 82 YGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGL----LTDEEIRKACEICIDAGADFVKTSTGFGA 157 (211)
T ss_pred cCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCC----CCHHHHHHHHHHHHHhCCCEEEeCCCCCC
Confidence 99999998766531 12233332 22234677776543 244678888888889999999987 3
Q ss_pred ecCCHhHHHHHHHHhc
Q 015614 162 SVNDITEIARIFQLLS 177 (403)
Q Consensus 162 ~~~~~~D~~~ll~~~~ 177 (403)
...+.+|+..+.+...
T Consensus 158 ~gat~~dv~~m~~~v~ 173 (211)
T TIGR00126 158 GGATVEDVRLMRNTVG 173 (211)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 3356788877776644
No 233
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=87.20 E-value=6.3 Score=39.28 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=58.2
Q ss_pred eEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC------CCC----chHHHHHHhcCCCcEEEEeecCCCCCCCC
Q 015614 12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN------FQP----GKDLEIILTKKPLPVLIVYRPKWAGGLYE 81 (403)
Q Consensus 12 ~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~------~~~----~~~l~~l~~~~~~PiI~T~R~~~eGG~~~ 81 (403)
.+.++|.+.+.++....++.+.+.|+|+||+-+-+-.. .+. .+.++.+++..++|+++-++.. +
T Consensus 103 pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~-----~- 176 (334)
T PRK07565 103 PVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPY-----F- 176 (334)
T ss_pred cEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCC-----c-
Confidence 35689999999888777777777799999996643111 111 1334566667789999988742 1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEe
Q 015614 82 GDEHKRLEALHLAEDLGADYVDFE 105 (403)
Q Consensus 82 ~~~~~~~~ll~~~~~~g~~yvDiE 105 (403)
..-.++.+.+.+.|+++|.+=
T Consensus 177 ---~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 177 ---SNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred ---hhHHHHHHHHHHcCCCeEEEE
Confidence 124456667778899999763
No 234
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=87.17 E-value=1 Score=42.41 Aligned_cols=37 Identities=16% Similarity=0.080 Sum_probs=32.6
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
..+++++|||+|+|.+|..=+..|.+.|++|+|++-+
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 5677899999999999988888899999999999764
No 235
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=87.15 E-value=0.79 Score=49.99 Aligned_cols=35 Identities=31% Similarity=0.561 Sum_probs=31.9
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
+..+|+|+|+|-+|.+.|.+|++.|++|.|+.|.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 34689999999999999999999999999999864
No 236
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=87.11 E-value=1.3 Score=44.93 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=34.1
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
..+.|+++.|+|.|..|++++.-|..+|++|..+++.
T Consensus 112 ~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~ 148 (378)
T PRK15438 112 FSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPP 148 (378)
T ss_pred CCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCc
Confidence 5678999999999999999999999999999999864
No 237
>PLN02463 lycopene beta cyclase
Probab=87.03 E-value=0.8 Score=47.63 Aligned_cols=33 Identities=30% Similarity=0.318 Sum_probs=30.1
Q ss_pred CeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
-.++|+|+|-+|.+++++|++.|.+|.|+.+.+
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 479999999999999999999999999998754
No 238
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=87.00 E-value=1.4 Score=44.78 Aligned_cols=37 Identities=30% Similarity=0.388 Sum_probs=33.9
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
..+.||++.|+|.|..|+.++..|..+|++|.++++.
T Consensus 112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~ 148 (381)
T PRK00257 112 VDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPP 148 (381)
T ss_pred CCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCc
Confidence 4678999999999999999999999999999999864
No 239
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=86.99 E-value=28 Score=32.92 Aligned_cols=152 Identities=20% Similarity=0.246 Sum_probs=91.5
Q ss_pred HHHHHhcCCCEEEEEecCCC-CCCCc-hHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHH---HHHHHHHHcCCcEEE
Q 015614 29 MYQAKAEGADVVEIRLDCIN-NFQPG-KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRL---EALHLAEDLGADYVD 103 (403)
Q Consensus 29 ~~~~~~~~~D~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~---~ll~~~~~~g~~yvD 103 (403)
+..+...|||-|||.--+-. ...|+ -.++..++..++|+-.-+|++ ||.|-.++.+.- +=+..+-++|+.-|=
T Consensus 14 l~~A~~~GAdRiELC~~La~GG~TPSyG~~k~a~~~~~ipv~~MIRPR--gGdFvY~~~E~~iM~~DI~~~~~lG~~GVV 91 (241)
T COG3142 14 LLAAQAAGADRIELCDALAEGGLTPSYGVIKEAVELSKIPVYVMIRPR--GGDFVYSDDELEIMLEDIRLARELGVQGVV 91 (241)
T ss_pred HHHHHHcCCceeehhhccccCCCCCCHHHHHHHHhhcCCceEEEEecC--CCCcccChHHHHHHHHHHHHHHHcCCCcEE
Confidence 34556789999999755543 23332 245666666899999999975 887766665443 334466778877665
Q ss_pred Eeccc-----cchHHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCC--HhHHHHH-HH
Q 015614 104 FELKV-----ASNILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVND--ITEIARI-FQ 174 (403)
Q Consensus 104 iEl~~-----~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~--~~D~~~l-l~ 174 (403)
+=.-. +.+.+++|... .+ .+=+.||- |+.+|+. .+-++++.++| +-+|-+.... ..|.+.. -+
T Consensus 92 ~G~lt~dg~iD~~~le~Li~a-A~--gL~vTFHrAFD~~~d~---~~ale~li~~G--v~RILTsGg~~sa~eg~~~l~~ 163 (241)
T COG3142 92 LGALTADGNIDMPRLEKLIEA-AG--GLGVTFHRAFDECPDP---LEALEQLIELG--VERILTSGGKASALEGLDLLKR 163 (241)
T ss_pred EeeecCCCccCHHHHHHHHHH-cc--CCceeeehhhhhcCCH---HHHHHHHHHCC--CcEEecCCCcCchhhhHHHHHH
Confidence 53322 23345566533 22 35578887 9999863 44456666666 6777776643 3344333 33
Q ss_pred HhccC-CCCEEEEEcCc
Q 015614 175 LLSHC-QVPIIAYSVGE 190 (403)
Q Consensus 175 ~~~~~-~~p~i~~~MG~ 190 (403)
+..+. +.+.|..+-|-
T Consensus 164 li~~a~gri~Im~GaGV 180 (241)
T COG3142 164 LIEQAKGRIIIMAGAGV 180 (241)
T ss_pred HHHHhcCCEEEEeCCCC
Confidence 44444 44555544443
No 240
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=86.96 E-value=14 Score=37.04 Aligned_cols=148 Identities=18% Similarity=0.280 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015614 20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (403)
Q Consensus 20 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~ 99 (403)
.|.+.-++|+.+..+.|||+|=+-+.-.+. .+.+..+++..++|++.-+- | -.++...+++.|+
T Consensus 39 ~Dv~atv~Qi~~L~~aGceiVRvav~~~~~---a~al~~I~~~~~iPlvADIH-------F------d~~lAl~a~~~G~ 102 (360)
T PRK00366 39 ADVEATVAQIKRLARAGCEIVRVAVPDMEA---AAALPEIKKQLPVPLVADIH-------F------DYRLALAAAEAGA 102 (360)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEccCCHHH---HHhHHHHHHcCCCCEEEecC-------C------CHHHHHHHHHhCC
Confidence 456777888888889999999775553332 46788888889999996533 1 1234456677777
Q ss_pred cEEEEecccc---chHHHHHH-hccCCCcEE-EEeccC---------C-CCCCC--HhHHHHHHHHHHHcCCCEEEEEee
Q 015614 100 DYVDFELKVA---SNILGKQY-SSHQSGTRF-IVSCNL---------D-CETPS--EEDLGYLVSRMQATGADIIKLVFS 162 (403)
Q Consensus 100 ~yvDiEl~~~---~~~~~~l~-~~~~~~~ki-I~S~H~---------f-~~tp~--~~~l~~~~~~~~~~gadivKia~~ 162 (403)
+-+-|.=-.. ++.++.+. .++..+..| |+--|= + ..||. .+...+..+.+.++|.+=+|+-..
T Consensus 103 ~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~K 182 (360)
T PRK00366 103 DALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVK 182 (360)
T ss_pred CEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE
Confidence 7776643222 22333443 233333333 333221 1 12331 144566677788899999999999
Q ss_pred cCCHhHHHHHHHHhcc-CCCCE
Q 015614 163 VNDITEIARIFQLLSH-CQVPI 183 (403)
Q Consensus 163 ~~~~~D~~~ll~~~~~-~~~p~ 183 (403)
+.+..+..+..+.+.+ .+.|+
T Consensus 183 sS~v~~~i~ayrlla~~~dyPL 204 (360)
T PRK00366 183 ASDVQDLIAAYRLLAKRCDYPL 204 (360)
T ss_pred cCCHHHHHHHHHHHHhcCCCCc
Confidence 9998888777777543 46664
No 241
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=86.93 E-value=2.2 Score=44.27 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=44.5
Q ss_pred ccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEE-EEecC
Q 015614 337 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDID 400 (403)
Q Consensus 337 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~-v~nR~ 400 (403)
-.++|....++..+... +..++|++++|=|.|.+|..++.-|.++|++|. |.+.+
T Consensus 215 ATG~Gv~~~~~~~l~~~---------~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~ 270 (454)
T PTZ00079 215 ATGYGLVYFVLEVLKKL---------NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD 270 (454)
T ss_pred ccHHHHHHHHHHHHHHc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 45778888888877632 256789999999999999999999999999765 65543
No 242
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.69 E-value=4.6 Score=39.70 Aligned_cols=124 Identities=19% Similarity=0.320 Sum_probs=74.1
Q ss_pred HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCceEEecccchHHH--HcccccCCHHHhhccceeEEEEeccCC
Q 015614 258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG 330 (403)
Q Consensus 258 n~~~~~~gl~~~y~~~~~----~~~~~~~~~~-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g 330 (403)
....+++|++.....++. +++.+.++.+ .++...|+-|-+|.-..+ -..++.++| .+.+-..+..- -|
T Consensus 55 ~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p-~KDVDGl~~~n----~g 129 (297)
T PRK14168 55 IKTAHRLGFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDP-DKDVDGFHPVN----VG 129 (297)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc-cccccccChhh----HH
Confidence 456788999876555432 3577777777 457899999999963211 011111111 11111111110 01
Q ss_pred eE-EE------EeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHC----CCeEEEEe
Q 015614 331 KL-IG------YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSR----GARVVIFD 398 (403)
Q Consensus 331 ~l-~G------~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~----g~~i~v~n 398 (403)
++ .| .-.--.|++.-|+.. +.+++||+++|+|.+.. +|.++.-|.+. ++.|+++.
T Consensus 130 ~l~~~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~h 196 (297)
T PRK14168 130 RLMIGGDEVKFLPCTPAGIQEMLVRS-------------GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVH 196 (297)
T ss_pred HHhcCCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEec
Confidence 11 11 112256777766543 36789999999997666 99999999887 67898886
Q ss_pred c
Q 015614 399 I 399 (403)
Q Consensus 399 R 399 (403)
+
T Consensus 197 s 197 (297)
T PRK14168 197 T 197 (297)
T ss_pred C
Confidence 4
No 243
>PRK08324 short chain dehydrogenase; Validated
Probab=86.66 E-value=0.73 Score=50.46 Aligned_cols=38 Identities=45% Similarity=0.686 Sum_probs=33.6
Q ss_pred CCCCCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 365 PLAGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 365 ~~~~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
.+.++.++|.| +||.|++++..|.+.|++|++++|+.+
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~ 457 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE 457 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence 45689999999 599999999999999999999999753
No 244
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=86.51 E-value=2.6 Score=36.77 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=31.5
Q ss_pred CCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEec
Q 015614 364 SPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 364 ~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~nR 399 (403)
.+++||+++|+|.+.. ++.++.-|.+.|+.++++++
T Consensus 24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~ 60 (140)
T cd05212 24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW 60 (140)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCC
Confidence 5789999999997665 99999999999999999885
No 245
>PRK07574 formate dehydrogenase; Provisional
Probab=86.50 E-value=1.1 Score=45.70 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=34.2
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.+.|+++.|+|.|..|++++..|+..|++|..++|+.
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~ 225 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHR 225 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC
Confidence 4678999999999999999999999999999999974
No 246
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=86.44 E-value=28 Score=34.92 Aligned_cols=163 Identities=16% Similarity=0.177 Sum_probs=89.9
Q ss_pred ccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHH-HHhcCCCcEEEEeecC----CCCCCCCCCHHHHHHHHH
Q 015614 18 MAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEI-ILTKKPLPVLIVYRPK----WAGGLYEGDEHKRLEALH 92 (403)
Q Consensus 18 ~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~-l~~~~~~PiI~T~R~~----~eGG~~~~~~~~~~~ll~ 92 (403)
+.+.+++++..+.+.+..++|+|=+ | +.--+.. +.+..+.++|+++-.. ...|. .++..-.--.+
T Consensus 44 ~~~~l~~~K~lv~~~l~~~asaILl--d------~~yG~~a~~~~~~~~GLil~~e~tg~d~t~~gr--~~~~~~~~sve 113 (340)
T PRK12858 44 SYTDLVDFKLAVSEALTPYASAILL--D------PEYGLPAAKVRDPNCGLLLSYEKTGYDATAPGR--LPDLLDNWSVR 113 (340)
T ss_pred chhhHHHHHHHHHHHHhhCCCEEEE--c------cccChhhhcccCCCCCeEEEecccccccCCCCC--CccccccccHH
Confidence 3457778888888887778888765 2 1000111 2234578899885311 11222 12111111246
Q ss_pred HHHHcCCcEEEEeccccch-----------HHHHHH-hccCCCcEEEE---eccCCCCC--------CCHhHHHHHHHHH
Q 015614 93 LAEDLGADYVDFELKVASN-----------ILGKQY-SSHQSGTRFIV---SCNLDCET--------PSEEDLGYLVSRM 149 (403)
Q Consensus 93 ~~~~~g~~yvDiEl~~~~~-----------~~~~l~-~~~~~~~kiI~---S~H~f~~t--------p~~~~l~~~~~~~ 149 (403)
.+.++|+|.|=+=+....+ .+.++. ..++.+.-+++ +|=.-... ...+.+....+..
T Consensus 114 ~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~ 193 (340)
T PRK12858 114 RIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEF 193 (340)
T ss_pred HHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHH
Confidence 7889999987775544221 123333 23456777777 44321111 1123456666677
Q ss_pred H--HcCCCEEEEEeecC--------------CHhHHHHHHHH-hccCCCCEEEEEcCc
Q 015614 150 Q--ATGADIIKLVFSVN--------------DITEIARIFQL-LSHCQVPIIAYSVGE 190 (403)
Q Consensus 150 ~--~~gadivKia~~~~--------------~~~D~~~ll~~-~~~~~~p~i~~~MG~ 190 (403)
. ++|+|++|+-++.+ +.++....++- ...+..|+|.++=|.
T Consensus 194 ~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~ 251 (340)
T PRK12858 194 SKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV 251 (340)
T ss_pred hhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC
Confidence 7 49999999988754 44555554433 334577887766554
No 247
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=86.42 E-value=2.2 Score=43.70 Aligned_cols=54 Identities=31% Similarity=0.405 Sum_probs=41.8
Q ss_pred eccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcc-----------------hhHHHHHHHHHHHCCCeEEEEe
Q 015614 336 NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-----------------GGAGRALAFGAKSRGARVVIFD 398 (403)
Q Consensus 336 NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGa-----------------GGaarai~~al~~~g~~i~v~n 398 (403)
--|..=++..+++.+.. .+++|++++|-|+ |+.|++++.+|.+.|++|+++.
T Consensus 167 ~~~~~~I~~~~~~~~~~-----------~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~ 235 (399)
T PRK05579 167 MAEPEEIVAAAERALSP-----------KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS 235 (399)
T ss_pred CCCHHHHHHHHHHHhhh-----------cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 45666666666665531 2467899999987 5589999999999999999988
Q ss_pred cC
Q 015614 399 ID 400 (403)
Q Consensus 399 R~ 400 (403)
|+
T Consensus 236 ~~ 237 (399)
T PRK05579 236 GP 237 (399)
T ss_pred CC
Confidence 75
No 248
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=86.41 E-value=0.79 Score=45.55 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=30.3
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
.+++++|+|+|+.+..++..++..|++|++++|+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~ 205 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRR 205 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 4789999999999999998888899999888873
No 249
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=86.40 E-value=1.1 Score=46.99 Aligned_cols=34 Identities=29% Similarity=0.482 Sum_probs=31.2
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
.+++++|+|+|-+|.+++..|.+.|.+|+|+.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecC
Confidence 4689999999999999999999999999999875
No 250
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=86.19 E-value=3.1 Score=41.30 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=38.3
Q ss_pred CCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEE
Q 015614 136 TPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIA 185 (403)
Q Consensus 136 tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~i~ 185 (403)
|-+.+...+++.++.+.|||||++|+. +.++...+-......+.|+++
T Consensus 30 T~Dv~atv~QI~~L~~aGceiVRvavp--~~~~A~al~~I~~~~~iPlVA 77 (346)
T TIGR00612 30 TIDIDSTVAQIRALEEAGCDIVRVTVP--DRESAAAFEAIKEGTNVPLVA 77 (346)
T ss_pred chhHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHhHHHHHhCCCCCEEE
Confidence 445567888899999999999999998 667776676676777888876
No 251
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=86.19 E-value=0.91 Score=47.90 Aligned_cols=33 Identities=39% Similarity=0.482 Sum_probs=29.9
Q ss_pred CeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
..|+|+|+|+++-++++.+++.|++|.|+.+..
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~ 94 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP 94 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 469999999999999999999999999988754
No 252
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=86.18 E-value=0.92 Score=43.56 Aligned_cols=35 Identities=26% Similarity=0.240 Sum_probs=31.4
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~ 400 (403)
+.+.+|+|+|+||.|-.++..|...|+ +|+|++-+
T Consensus 24 L~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD 59 (287)
T PTZ00245 24 LMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEG 59 (287)
T ss_pred HhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCC
Confidence 446789999999999999999999999 99998854
No 253
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=86.17 E-value=6.8 Score=39.01 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCCEEEEEecC-------CC---CC-CC-------------chHHHHHHhcC--CCcEEEEeecC--CC
Q 015614 25 VLSNMYQAKAEGADVVEIRLDC-------IN---NF-QP-------------GKDLEIILTKK--PLPVLIVYRPK--WA 76 (403)
Q Consensus 25 ~~~~~~~~~~~~~D~vElRlD~-------l~---~~-~~-------------~~~l~~l~~~~--~~PiI~T~R~~--~e 76 (403)
+...++.+.+.|.|.|||-.-+ |. +. .+ .+.++.+|+.. +.|+.+-++.. .+
T Consensus 156 ~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~ 235 (336)
T cd02932 156 FVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVE 235 (336)
T ss_pred HHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCC
Confidence 3444555677999999998743 11 11 11 24566677766 55665555432 12
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015614 77 GGLYEGDEHKRLEALHLAEDLGADYVDF 104 (403)
Q Consensus 77 GG~~~~~~~~~~~ll~~~~~~g~~yvDi 104 (403)
+|. +.++..++++.+.+.|++||++
T Consensus 236 ~g~---~~~e~~~ia~~Le~~gvd~iev 260 (336)
T cd02932 236 GGW---DLEDSVELAKALKELGVDLIDV 260 (336)
T ss_pred CCC---CHHHHHHHHHHHHHcCCCEEEE
Confidence 332 4677788888888889999886
No 254
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=86.16 E-value=11 Score=35.11 Aligned_cols=127 Identities=15% Similarity=0.147 Sum_probs=67.8
Q ss_pred CeeEEEecccCCHHHHHHHHHHHHhcC-CCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHH
Q 015614 10 TTMICAPLMAQSVEQVLSNMYQAKAEG-ADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRL 88 (403)
Q Consensus 10 ~~~icv~l~~~~~~e~~~~~~~~~~~~-~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~ 88 (403)
-|.+..|+.+-+-.++...+.+ .| ..+++-|...... ..+.++.+++..+.|+.+.+.-.. ......
T Consensus 3 ~pi~~a~m~g~~~~~~~~~~~~---~G~ig~i~~~~~~~~~--~~~~~~~i~~~~~~~~~v~~i~~~-------~~~~~~ 70 (236)
T cd04730 3 YPIIQAPMAGVSTPELAAAVSN---AGGLGFIGAGYLTPEA--LRAEIRKIRALTDKPFGVNLLVPS-------SNPDFE 70 (236)
T ss_pred CCEECCCCCCCCCHHHHHHHHh---CCCccccCCCCCCHHH--HHHHHHHHHHhcCCCeEEeEecCC-------CCcCHH
Confidence 3566666666555555444433 33 3454333221110 012344454444457666555321 001334
Q ss_pred HHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe
Q 015614 89 EALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF 161 (403)
Q Consensus 89 ~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~ 161 (403)
+.++.+.+.|++.|.+--..+.+..+.+. +.+.++|.+.|+ .+ ...++.+.|+|++++..
T Consensus 71 ~~~~~~~~~g~d~v~l~~~~~~~~~~~~~---~~~i~~i~~v~~------~~----~~~~~~~~gad~i~~~~ 130 (236)
T cd04730 71 ALLEVALEEGVPVVSFSFGPPAEVVERLK---AAGIKVIPTVTS------VE----EARKAEAAGADALVAQG 130 (236)
T ss_pred HHHHHHHhCCCCEEEEcCCCCHHHHHHHH---HcCCEEEEeCCC------HH----HHHHHHHcCCCEEEEeC
Confidence 56677788899999886554444444443 346788888763 22 33455567999998744
No 255
>PRK08605 D-lactate dehydrogenase; Validated
Probab=86.11 E-value=1.1 Score=44.82 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcchhHHHHHHHHH-HHCCCeEEEEecCC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGA-KSRGARVVIFDIDF 401 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al-~~~g~~i~v~nR~~ 401 (403)
.+.|+++.|+|.|..|++++..| ...|++|+.++|+.
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~ 180 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFP 180 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 46789999999999999999998 55788999998865
No 256
>PRK14852 hypothetical protein; Provisional
Probab=86.09 E-value=0.8 Score=51.66 Aligned_cols=106 Identities=8% Similarity=0.045 Sum_probs=64.0
Q ss_pred cEEEEeccCCCCCC----CHhH-HHHHHHHHHHcC---CCEEEEEeecCCHhHH--HHHHHH------hccCCCCEEEEE
Q 015614 124 TRFIVSCNLDCETP----SEED-LGYLVSRMQATG---ADIIKLVFSVNDITEI--ARIFQL------LSHCQVPIIAYS 187 (403)
Q Consensus 124 ~kiI~S~H~f~~tp----~~~~-l~~~~~~~~~~g---adivKia~~~~~~~D~--~~ll~~------~~~~~~p~i~~~ 187 (403)
..+|+|.|..-..+ +.++ -...++...+.| |++-|+|+-+..-.-. ..++++ ....+-=+|.++
T Consensus 84 ~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~Vn 163 (989)
T PRK14852 84 HDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVN 163 (989)
T ss_pred CcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 45667666421111 1222 233455566666 5788888644332211 122222 123345577888
Q ss_pred cCccchhhhhhc-CCCCCcccccccCCCCCCCCCCHHHHHhhh
Q 015614 188 VGERGLVSQLLS-PKFNGALVYGSLKGTPVLGLPTVESLRQTY 229 (403)
Q Consensus 188 MG~~G~~SRil~-~~~gs~lty~~~~~~sApGQ~~~~~l~~~~ 229 (403)
==..+-..|+++ ..+|..=+|+.+..|+.--.+++.++.+.+
T Consensus 164 PkH~~FY~r~l~f~~ig~~r~~p~VnaPAvll~~dl~~~~~~~ 206 (989)
T PRK14852 164 PKHVKFYTDIFLFKPFGEVRHYDTVDAPAVALRIDLHEAMDEL 206 (989)
T ss_pred cchHHHHHHHhCCccccccccCCCCCcchhheecCHHHHHHHH
Confidence 888899999988 778888888888777666777888877655
No 257
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=86.01 E-value=30 Score=34.98 Aligned_cols=198 Identities=17% Similarity=0.184 Sum_probs=107.9
Q ss_pred EecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHHH
Q 015614 15 APLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHL 93 (403)
Q Consensus 15 v~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~ 93 (403)
++++..+..++...+ .+.|+|.||+=.-...+ ++.+.++.+.+.. ...+..-.|.. .+-++.
T Consensus 17 ~~~s~~~k~~ia~~L---~~~Gv~~IEvG~p~~~~-~~~e~i~~i~~~~~~~~v~~~~r~~-------------~~di~~ 79 (363)
T TIGR02090 17 VSLTVEQKVEIARKL---DELGVDVIEAGFPIASE-GEFEAIKKISQEGLNAEICSLARAL-------------KKDIDK 79 (363)
T ss_pred CCCCHHHHHHHHHHH---HHcCCCEEEEeCCCCCh-HHHHHHHHHHhcCCCcEEEEEcccC-------------HHHHHH
Confidence 444444444554444 45699999984211111 1234455555443 33344334532 122667
Q ss_pred HHHcCCcEEEEeccccch------------HHH----HHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015614 94 AEDLGADYVDFELKVASN------------ILG----KQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII 157 (403)
Q Consensus 94 ~~~~g~~yvDiEl~~~~~------------~~~----~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadiv 157 (403)
+.+.|++.|.+-+...+- .++ .+...+..+.++-++.=+...+ +.+.+.++++++.+.|+|.+
T Consensus 80 a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~-~~~~l~~~~~~~~~~g~~~i 158 (363)
T TIGR02090 80 AIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRT-DIDFLIKVFKRAEEAGADRI 158 (363)
T ss_pred HHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCC-CHHHHHHHHHHHHhCCCCEE
Confidence 888899998885544221 111 1222344567777777554444 36789999999999999998
Q ss_pred EEEeecC--CHhHHHHHHHHhccC-CCCEEEEEcCccch--hhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614 158 KLVFSVN--DITEIARIFQLLSHC-QVPIIAYSVGERGL--VSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (403)
Q Consensus 158 Kia~~~~--~~~D~~~ll~~~~~~-~~p~i~~~MG~~G~--~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~ 230 (403)
-++=+.- ++.++.++.+.+.+. +.|+-.=+=-..|. ..=+..-.-|....=+++.+ +-..|+.+++++...++
T Consensus 159 ~l~DT~G~~~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlGeraGN~~lE~vv~~L~ 237 (363)
T TIGR02090 159 NIADTVGVLTPQKMEELIKKLKENVKLPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIGERAGNAALEEVVMALK 237 (363)
T ss_pred EEeCCCCccCHHHHHHHHHHHhcccCceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeeccccccccccHHHHHHHHH
Confidence 8886654 478888887776432 34432111111121 11111112233333333332 24578888888776554
No 258
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=85.99 E-value=1.7 Score=42.37 Aligned_cols=37 Identities=30% Similarity=0.449 Sum_probs=30.2
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHC----CC-------eEEEEecC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSR----GA-------RVVIFDID 400 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~----g~-------~i~v~nR~ 400 (403)
.+++..+++++|||.|+-+|+..|... |. +|++++|.
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~ 68 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSK 68 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCC
Confidence 456678999999999999888877654 76 69999875
No 259
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=85.92 E-value=29 Score=34.70 Aligned_cols=103 Identities=16% Similarity=0.132 Sum_probs=59.6
Q ss_pred HHHHHhc-CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccch--------------HHHHHHhcc
Q 015614 56 LEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASN--------------ILGKQYSSH 120 (403)
Q Consensus 56 l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~--------------~~~~l~~~~ 120 (403)
+..+++. .++|+|+.+=.. .......+.+++.++++.+-+ ++|++++.+..+.. ..+.++...
T Consensus 128 ~~~l~~~~~~~pvivsI~~~-~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~ 205 (344)
T PRK05286 128 AERLKKAYRGIPLGINIGKN-KDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQ 205 (344)
T ss_pred HHHHHHhcCCCcEEEEEecC-CCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHH
Confidence 4444443 578999999422 111123456888888888765 59999998876531 222222211
Q ss_pred CC---CcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015614 121 QS---GTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV 163 (403)
Q Consensus 121 ~~---~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~ 163 (403)
.. +..|++-.-. ..+.+++.++.+.+.+.|+|.+-+.-+.
T Consensus 206 ~~~~~~~PV~vKlsp---~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 206 AELHGYVPLLVKIAP---DLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred hccccCCceEEEeCC---CCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 10 1345544321 1123467777788888888887776554
No 260
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=85.91 E-value=34 Score=33.45 Aligned_cols=144 Identities=14% Similarity=0.207 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCC----CCCCchHHHH-------HHhcCCCcEEEEeecCCCCCCCCCCHHHHHH
Q 015614 21 SVEQVLSNMYQAKAEGADVVEIRLDCIN----NFQPGKDLEI-------ILTKKPLPVLIVYRPKWAGGLYEGDEHKRLE 89 (403)
Q Consensus 21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~----~~~~~~~l~~-------l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ 89 (403)
+.++++.++.+..+.|||.|.+=--.-. ..+..+++.+ +++..+.| +++-| .+-+
T Consensus 36 ~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~--ISIDT------------~~~~ 101 (282)
T PRK11613 36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVW--ISVDT------------SKPE 101 (282)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe--EEEEC------------CCHH
Confidence 5688888888888999999998633221 1222233333 33223444 45443 3456
Q ss_pred HHHHHHHcCCcEE-EEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCH---------------hHHHHHHHHHHHcC
Q 015614 90 ALHLAEDLGADYV-DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSE---------------EDLGYLVSRMQATG 153 (403)
Q Consensus 90 ll~~~~~~g~~yv-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~---------------~~l~~~~~~~~~~g 153 (403)
.++.|++.|+++| ||---..++.++.+. +.+..+|+-+ . .++|.. ..+.+.++.+.+.|
T Consensus 102 va~~AL~~GadiINDI~g~~d~~~~~~~a---~~~~~vVlmh-~-~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~G 176 (282)
T PRK11613 102 VIRESAKAGAHIINDIRSLSEPGALEAAA---ETGLPVCLMH-M-QGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAG 176 (282)
T ss_pred HHHHHHHcCCCEEEECCCCCCHHHHHHHH---HcCCCEEEEc-C-CCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcC
Confidence 7889999999998 663211223333331 3466777774 3 233421 23456677787877
Q ss_pred CCEEEEEe-----ecCCHhHHHHHHHHhcc---CCCCE
Q 015614 154 ADIIKLVF-----SVNDITEIARIFQLLSH---CQVPI 183 (403)
Q Consensus 154 adivKia~-----~~~~~~D~~~ll~~~~~---~~~p~ 183 (403)
.+==+|+. ...+.++++.+++-+.. .+.|+
T Consensus 177 I~~~~IilDPGiGF~k~~~~n~~ll~~l~~l~~lg~Pi 214 (282)
T PRK11613 177 IAKEKLLLDPGFGFGKNLSHNYQLLARLAEFHHFNLPL 214 (282)
T ss_pred CChhhEEEeCCCCcCCCHHHHHHHHHHHHHHHhCCCCE
Confidence 53225554 34677888888777543 35674
No 261
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=85.89 E-value=0.96 Score=44.45 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=30.7
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEec
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDI 399 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR 399 (403)
+.+.-++|+|+||+|.-++-.|.+-|+ +|.|++-
T Consensus 72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDf 106 (430)
T KOG2018|consen 72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDF 106 (430)
T ss_pred hcCcEEEEEecCchhHHHHHHHHHhcCceEEEech
Confidence 457889999999999999999999999 9998864
No 262
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=85.85 E-value=19 Score=34.54 Aligned_cols=161 Identities=17% Similarity=0.256 Sum_probs=88.5
Q ss_pred CCcccCCCCCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEE-----ecCCCCCCCchHH-------HHHHhcCCCcEE
Q 015614 1 MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIR-----LDCINNFQPGKDL-------EIILTKKPLPVL 68 (403)
Q Consensus 1 ~~~~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElR-----lD~l~~~~~~~~l-------~~l~~~~~~PiI 68 (403)
||+.|.++....= -. ..-+.++++..+.+..+.|||+|.+- -+. ...++.+++ +.+++..+.|+
T Consensus 4 mgIlN~tpdSF~d-g~-~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~-~~i~~~~E~~rl~~~v~~i~~~~~~pl- 79 (257)
T cd00739 4 MGILNVTPDSFSD-GG-RFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGA-DPVSVEEELERVIPVLEALRGELDVLI- 79 (257)
T ss_pred EEEEcCCCCCCCC-CC-CCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCcE-
Confidence 5666666664321 00 01356888888888889999999993 332 222222233 33333345553
Q ss_pred EEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEE-Eecccc-chHHHHHHhccCCCcEEEEeccCCCCCCCH-------
Q 015614 69 IVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVD-FELKVA-SNILGKQYSSHQSGTRFIVSCNLDCETPSE------- 139 (403)
Q Consensus 69 ~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvD-iEl~~~-~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~------- 139 (403)
.+-| .+-+.+++|++.|+++|- |..... ++..+ +.. +.+..+|+ .|+ .+.|..
T Consensus 80 -SIDT------------~~~~v~e~al~~G~~iINdisg~~~~~~~~~-l~~--~~~~~vV~-m~~-~g~p~~~~~~~~~ 141 (257)
T cd00739 80 -SVDT------------FRAEVARAALEAGADIINDVSGGSDDPAMLE-VAA--EYGAPLVL-MHM-RGTPKTMQENPYY 141 (257)
T ss_pred -EEeC------------CCHHHHHHHHHhCCCEEEeCCCCCCChHHHH-HHH--HcCCCEEE-ECC-CCCCcccccCCCc
Confidence 4333 345678899999988763 555433 23332 322 34677888 454 345532
Q ss_pred ----h----HHHHHHHHHHHcCCCEEEEEe-----ecCCHhHHHHHHHHhc---cCCCCE
Q 015614 140 ----E----DLGYLVSRMQATGADIIKLVF-----SVNDITEIARIFQLLS---HCQVPI 183 (403)
Q Consensus 140 ----~----~l~~~~~~~~~~gadivKia~-----~~~~~~D~~~ll~~~~---~~~~p~ 183 (403)
+ .+.+.++.+.+.|-+-=||.. ...+.+++..+++-+. +.+.|+
T Consensus 142 ~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~~i~~l~~~~~pi 201 (257)
T cd00739 142 EDVVDEVLSFLEARLEAAESAGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQLGLPV 201 (257)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCHHHEEEecCCCcccCHHHHHHHHHHHHHHHhCCCcE
Confidence 2 255667778888864224433 3345556655555433 336665
No 263
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=85.85 E-value=0.97 Score=37.70 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=26.4
Q ss_pred CeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
|++||+|.|..|.-++.+|.++|++..+++.++
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~ 35 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGIETVAVNSNP 35 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGG
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCcceeccCch
Confidence 689999999999999999999999544444443
No 264
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=85.81 E-value=7.8 Score=38.78 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=48.7
Q ss_pred HHHHHhcCCCEEEEEecC-------CCC---C-CC-------------chHHHHHHhcCCCcEEEEeecC--CCCCCCCC
Q 015614 29 MYQAKAEGADVVEIRLDC-------INN---F-QP-------------GKDLEIILTKKPLPVLIVYRPK--WAGGLYEG 82 (403)
Q Consensus 29 ~~~~~~~~~D~vElRlD~-------l~~---~-~~-------------~~~l~~l~~~~~~PiI~T~R~~--~eGG~~~~ 82 (403)
++.+.+.|.|.|||-.-. |.+ . ++ .+.+..+|+..+.|+.+-++.. .+|| .
T Consensus 148 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G---~ 224 (337)
T PRK13523 148 AVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGG---L 224 (337)
T ss_pred HHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCC---C
Confidence 445566899999997763 111 1 11 1455566766666655544432 2233 2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc
Q 015614 83 DEHKRLEALHLAEDLGADYVDFELK 107 (403)
Q Consensus 83 ~~~~~~~ll~~~~~~g~~yvDiEl~ 107 (403)
+.++..++.+.+.+.|+|||+|-..
T Consensus 225 ~~~e~~~i~~~l~~~gvD~i~vs~g 249 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVDLIDVSSG 249 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 5688889999998999999998654
No 265
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=85.73 E-value=37 Score=33.16 Aligned_cols=85 Identities=13% Similarity=0.099 Sum_probs=55.7
Q ss_pred CeeEEEecccCCHHHHHHHHHHHHhc---CCCEEEEEecCCCC-----C--CC---chHHHHHHhcCCCcEEEEeecCCC
Q 015614 10 TTMICAPLMAQSVEQVLSNMYQAKAE---GADVVEIRLDCINN-----F--QP---GKDLEIILTKKPLPVLIVYRPKWA 76 (403)
Q Consensus 10 ~~~icv~l~~~~~~e~~~~~~~~~~~---~~D~vElRlD~l~~-----~--~~---~~~l~~l~~~~~~PiI~T~R~~~e 76 (403)
.| +.++|.+. .++....++..... ++|+|||=+=+=.. . ++ .+.++.+++..++|+++-+|...
T Consensus 92 ~p-vivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~- 168 (294)
T cd04741 92 KP-FFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYT- 168 (294)
T ss_pred Ce-EEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-
Confidence 44 56999998 88888777776553 69999998765321 1 11 12334455566899999998731
Q ss_pred CCCCCCCHHHHHHHHHHHHHc--CCcEEE
Q 015614 77 GGLYEGDEHKRLEALHLAEDL--GADYVD 103 (403)
Q Consensus 77 GG~~~~~~~~~~~ll~~~~~~--g~~yvD 103 (403)
+.++..++.+.+.+. |++.|-
T Consensus 169 ------~~~~~~~~a~~l~~~~~G~~gi~ 191 (294)
T cd04741 169 ------DPAQFDTLAEALNAFACPISFIT 191 (294)
T ss_pred ------CHHHHHHHHHHHhccccCCcEEE
Confidence 344455666666666 677665
No 266
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=85.68 E-value=0.92 Score=43.57 Aligned_cols=36 Identities=39% Similarity=0.437 Sum_probs=30.7
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG 402 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~ 402 (403)
.+++++|+|+|+.+.+++..++.+|+ +|++++++.+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~ 156 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPD 156 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 57899999999999999988888999 5888877643
No 267
>PRK06484 short chain dehydrogenase; Validated
Probab=85.67 E-value=0.89 Score=47.66 Aligned_cols=36 Identities=36% Similarity=0.509 Sum_probs=32.3
Q ss_pred CCCCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 366 LAGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 366 ~~~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
..+|.++|.| +||.|++++..|.+.|++|++++|+.
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~ 303 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDA 303 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999 58889999999999999999999974
No 268
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=85.64 E-value=6.3 Score=38.83 Aligned_cols=87 Identities=20% Similarity=0.218 Sum_probs=53.2
Q ss_pred cccCCHHHHHH----HHHHHHhcCCCEEEEEec--CC-----CC---C-CC-------------chHHHHHHhcC--CCc
Q 015614 17 LMAQSVEQVLS----NMYQAKAEGADVVEIRLD--CI-----NN---F-QP-------------GKDLEIILTKK--PLP 66 (403)
Q Consensus 17 l~~~~~~e~~~----~~~~~~~~~~D~vElRlD--~l-----~~---~-~~-------------~~~l~~l~~~~--~~P 66 (403)
++..++++++. .++.+.+.|.|.|||-.- || .+ . ++ .+.+..+|+.. +.|
T Consensus 131 mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~ 210 (327)
T cd02803 131 MTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFP 210 (327)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCce
Confidence 33344444433 344556689999999874 22 11 1 11 14455666665 556
Q ss_pred EEEEeecC--CCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015614 67 VLIVYRPK--WAGGLYEGDEHKRLEALHLAEDLGADYVDFEL 106 (403)
Q Consensus 67 iI~T~R~~--~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl 106 (403)
+.+-++.. .++| .+.++..++++.+.+.|++||++--
T Consensus 211 i~vris~~~~~~~g---~~~~e~~~la~~l~~~G~d~i~vs~ 249 (327)
T cd02803 211 VGVRLSADDFVPGG---LTLEEAIEIAKALEEAGVDALHVSG 249 (327)
T ss_pred EEEEechhccCCCC---CCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 66655542 1233 3567888999999999999998744
No 269
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=85.63 E-value=31 Score=32.20 Aligned_cols=131 Identities=19% Similarity=0.197 Sum_probs=78.1
Q ss_pred HHHHHHHHhcCCCEEEEEecCCCCCCC---chHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 015614 26 LSNMYQAKAEGADVVEIRLDCINNFQP---GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV 102 (403)
Q Consensus 26 ~~~~~~~~~~~~D~vElRlD~l~~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yv 102 (403)
...++++++.|++++-+|--.....+- .+.+..+.+..+.|+|+.-|. ..|++.++|.|
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~~------------------dlA~~~~AdGV 85 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIINDRV------------------DLALAVGADGV 85 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEecCcH------------------HHHHhCCCCEE
Confidence 677889999999999999876654321 123344445678999976431 24557889998
Q ss_pred EEecc-ccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE--eecCCHhHH----HHHHHH
Q 015614 103 DFELK-VASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV--FSVNDITEI----ARIFQL 175 (403)
Q Consensus 103 DiEl~-~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia--~~~~~~~D~----~~ll~~ 175 (403)
=+.-+ ++....+++ ..++..|=+|.|+ .+...++.+.|+|++=+= +...|.+|. ...++.
T Consensus 86 HlGq~D~~~~~ar~~---~~~~~iIG~S~h~----------~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~ 152 (211)
T COG0352 86 HLGQDDMPLAEAREL---LGPGLIIGLSTHD----------LEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLRE 152 (211)
T ss_pred EcCCcccchHHHHHh---cCCCCEEEeecCC----------HHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHH
Confidence 88765 333333333 2344444468886 344566777889987653 222333333 222333
Q ss_pred hcc-CCCCEEEEE
Q 015614 176 LSH-CQVPIIAYS 187 (403)
Q Consensus 176 ~~~-~~~p~i~~~ 187 (403)
..+ ..+|+++|+
T Consensus 153 ~~~~~~iP~vAIG 165 (211)
T COG0352 153 IRELVNIPVVAIG 165 (211)
T ss_pred HHHhCCCCEEEEc
Confidence 333 358987764
No 270
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=85.54 E-value=21 Score=35.48 Aligned_cols=90 Identities=14% Similarity=0.165 Sum_probs=57.3
Q ss_pred CCeeEEEecccCC-------HHHHHHHHHHHHhcCCCEEEEEecCCCC-----CCC----chHHHHHHhcCC-----CcE
Q 015614 9 NTTMICAPLMAQS-------VEQVLSNMYQAKAEGADVVEIRLDCINN-----FQP----GKDLEIILTKKP-----LPV 67 (403)
Q Consensus 9 ~~~~icv~l~~~~-------~~e~~~~~~~~~~~~~D~vElRlD~l~~-----~~~----~~~l~~l~~~~~-----~Pi 67 (403)
..|. .++|.+.+ .+|....++.+. ..+|++|+-+=+-.. ... .+.++.+++... +|+
T Consensus 128 ~~pl-ivsi~g~~~~~~~~~~~d~~~~~~~~~-~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv 205 (327)
T cd04738 128 GGPL-GVNIGKNKDTPLEDAVEDYVIGVRKLG-PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPL 205 (327)
T ss_pred CCeE-EEEEeCCCCCcccccHHHHHHHHHHHH-hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCe
Confidence 3454 58887765 567776666653 359999997633211 111 123344554444 899
Q ss_pred EEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecc
Q 015614 68 LIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELK 107 (403)
Q Consensus 68 I~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~ 107 (403)
++-++.. .++++..++.+.+.+.|+++|.+--.
T Consensus 206 ~vKl~~~-------~~~~~~~~ia~~l~~aGad~I~~~n~ 238 (327)
T cd04738 206 LVKIAPD-------LSDEELEDIADVALEHGVDGIIATNT 238 (327)
T ss_pred EEEeCCC-------CCHHHHHHHHHHHHHcCCcEEEEECC
Confidence 9888742 23556778888888999999876543
No 271
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=85.51 E-value=22 Score=33.38 Aligned_cols=134 Identities=11% Similarity=0.060 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhcC-CCEEEEEecCCCCCCCc---hHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015614 23 EQVLSNMYQAKAEG-ADVVEIRLDCINNFQPG---KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG 98 (403)
Q Consensus 23 ~e~~~~~~~~~~~~-~D~vElRlD~l~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g 98 (403)
+++...++.++..| +++|-||---+...+.. +++..+-+..+.|+|+.-| +..+.+.|
T Consensus 26 ~~~~~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~liINd~------------------~dlA~~~~ 87 (221)
T PRK06512 26 AELAKLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGAAALIAGD------------------SRIAGRVK 87 (221)
T ss_pred ccHHHHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEeCH------------------HHHHHHhC
Confidence 46777788888899 69999995544432111 2233333445789987732 34466778
Q ss_pred CcEEEEeccccchHHHHHHhccCCCcEEEE-e-ccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec-CCHh----HHHH
Q 015614 99 ADYVDFELKVASNILGKQYSSHQSGTRFIV-S-CNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV-NDIT----EIAR 171 (403)
Q Consensus 99 ~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~-S-~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~-~~~~----D~~~ 171 (403)
++.|=+--+... +.+.+.. .+..++|+ | +|+ .++. .++.+.|+|++=+=-.. .+.. --..
T Consensus 88 adGVHLg~~d~~--~~~~r~~-~~~~~iiG~s~~~s------~~~a----~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~ 154 (221)
T PRK06512 88 ADGLHIEGNLAA--LAEAIEK-HAPKMIVGFGNLRD------RHGA----MEIGELRPDYLFFGKLGADNKPEAHPRNLS 154 (221)
T ss_pred CCEEEECccccC--HHHHHHh-cCCCCEEEecCCCC------HHHH----HHhhhcCCCEEEECCCCCCCCCCCCCCChH
Confidence 888765432111 1222211 23456777 5 443 2333 23556899988552111 1111 1123
Q ss_pred HH-HHhccCCCCEEEEE
Q 015614 172 IF-QLLSHCQVPIIAYS 187 (403)
Q Consensus 172 ll-~~~~~~~~p~i~~~ 187 (403)
++ .+....++|+++++
T Consensus 155 ~l~~~~~~~~iPvvAIG 171 (221)
T PRK06512 155 LAEWWAEMIEIPCIVQA 171 (221)
T ss_pred HHHHHHHhCCCCEEEEe
Confidence 34 33344578988886
No 272
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=85.48 E-value=30 Score=33.37 Aligned_cols=85 Identities=14% Similarity=0.094 Sum_probs=54.2
Q ss_pred EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---------------------chHHHHHH-hcCCCcEEEE
Q 015614 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---------------------GKDLEIIL-TKKPLPVLIV 70 (403)
Q Consensus 13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---------------------~~~l~~l~-~~~~~PiI~T 70 (403)
..++.-.|+++.....++...+.|+|+|||-+-+-.+.-+ .+.++.+| +..+.|+++.
T Consensus 14 ~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm 93 (259)
T PF00290_consen 14 PYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLM 93 (259)
T ss_dssp EEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEE
Confidence 3457778999999988888888899999999988765422 13456677 5679998765
Q ss_pred eecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEE
Q 015614 71 YRPKWAGGLYEGDEHKRLEALHLAEDLGADYVD 103 (403)
Q Consensus 71 ~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvD 103 (403)
-.-. +.-.--.-++++.+.+.|++-+=
T Consensus 94 ~Y~N------~i~~~G~e~F~~~~~~aGvdGlI 120 (259)
T PF00290_consen 94 TYYN------PIFQYGIERFFKEAKEAGVDGLI 120 (259)
T ss_dssp E-HH------HHHHH-HHHHHHHHHHHTEEEEE
T ss_pred eecc------HHhccchHHHHHHHHHcCCCEEE
Confidence 4421 00001122467788888876543
No 273
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=85.46 E-value=3.5 Score=41.26 Aligned_cols=48 Identities=21% Similarity=0.398 Sum_probs=38.0
Q ss_pred CCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEE
Q 015614 136 TPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIA 185 (403)
Q Consensus 136 tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~i~ 185 (403)
|-+.+...+++.++.+.|||||++|+. +.++...+-....+.++|+||
T Consensus 38 T~Dv~atv~Qi~~L~~aGceiVRvav~--~~~~a~al~~I~~~~~iPlvA 85 (360)
T PRK00366 38 TADVEATVAQIKRLARAGCEIVRVAVP--DMEAAAALPEIKKQLPVPLVA 85 (360)
T ss_pred chhHHHHHHHHHHHHHcCCCEEEEccC--CHHHHHhHHHHHHcCCCCEEE
Confidence 435567888889999999999999998 666766666666667888876
No 274
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=85.30 E-value=2.8 Score=37.44 Aligned_cols=37 Identities=30% Similarity=0.449 Sum_probs=28.2
Q ss_pred CCCCCCeEEEEcchh-HHHHHHHHHHHCCCeEEEEecC
Q 015614 364 SPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 364 ~~~~~~~~lilGaGG-aarai~~al~~~g~~i~v~nR~ 400 (403)
.+++||+++|+|.++ .++.++.-|.+.|+.|+++...
T Consensus 32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~ 69 (160)
T PF02882_consen 32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK 69 (160)
T ss_dssp -STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT
T ss_pred CCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC
Confidence 568899999999876 6999999999999999888653
No 275
>PRK14030 glutamate dehydrogenase; Provisional
Probab=85.26 E-value=2.9 Score=43.34 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEE
Q 015614 338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIF 397 (403)
Q Consensus 338 D~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~ 397 (403)
-+.|...+++..+... +..++|++++|=|.|.+|..++..|.++|++|..+
T Consensus 207 Tg~Gv~~~~~~~~~~~---------g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVav 257 (445)
T PRK14030 207 TGFGALYFVHQMLETK---------GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTI 257 (445)
T ss_pred cHHHHHHHHHHHHHHc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 4678888888877632 25688999999999999999999999999976653
No 276
>PRK09414 glutamate dehydrogenase; Provisional
Probab=85.21 E-value=2.7 Score=43.65 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=42.0
Q ss_pred ccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEE
Q 015614 337 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIF 397 (403)
Q Consensus 337 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~ 397 (403)
.-+.|...+++..+.+. +..++|++++|.|-|.+|+.++..|.+.|++|+.+
T Consensus 210 aTg~Gv~~~~~~~~~~~---------~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVav 261 (445)
T PRK09414 210 ATGYGLVYFAEEMLKAR---------GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTC 261 (445)
T ss_pred cccHHHHHHHHHHHHhc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 44568888888776632 25678999999999999999999999999976654
No 277
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=85.09 E-value=1.2 Score=44.25 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=30.0
Q ss_pred CCCeEEEEcchhHHHHHHHHHHH-CCC-eEEEEecCCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFGT 403 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~-~g~-~i~v~nR~~~k 403 (403)
.+.+++|+|+||.+..++..++. .|. +|+++.++++|
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k 201 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEK 201 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhH
Confidence 47899999999999988777775 565 89888887654
No 278
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=84.98 E-value=8.8 Score=38.81 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=45.7
Q ss_pred HHHHHhcCCCEEEEEecC-------C---CCCC-C-------------chHHHHHHhcCCCcEEEEeecC-CCCCCC---
Q 015614 29 MYQAKAEGADVVEIRLDC-------I---NNFQ-P-------------GKDLEIILTKKPLPVLIVYRPK-WAGGLY--- 80 (403)
Q Consensus 29 ~~~~~~~~~D~vElRlD~-------l---~~~~-~-------------~~~l~~l~~~~~~PiI~T~R~~-~eGG~~--- 80 (403)
+..+.+.|.|.|||..-+ | .+.. + .+.+..+|+...-.+++.+|-. +++..+
T Consensus 150 A~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~ 229 (361)
T cd04747 150 AADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTAR 229 (361)
T ss_pred HHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccC
Confidence 445567899999998765 1 1111 1 1455667766543444555633 221111
Q ss_pred -CCCHHHHHHHHHHHHHcCCcEEEE
Q 015614 81 -EGDEHKRLEALHLAEDLGADYVDF 104 (403)
Q Consensus 81 -~~~~~~~~~ll~~~~~~g~~yvDi 104 (403)
..+.++-.++++.+.+.|+|||++
T Consensus 230 ~g~~~~e~~~~~~~l~~~gvd~i~v 254 (361)
T cd04747 230 LADTPDELEALLAPLVDAGVDIFHC 254 (361)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 135567778888888889999776
No 279
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=84.98 E-value=1.1 Score=49.05 Aligned_cols=38 Identities=37% Similarity=0.600 Sum_probs=33.6
Q ss_pred CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.++.+|+++|.|+ ||.|++++..|.+.|++|.+++|+.
T Consensus 410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~ 448 (676)
T TIGR02632 410 KTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNL 448 (676)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3467899999995 8899999999999999999999874
No 280
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=84.96 E-value=1.7 Score=43.01 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.+.||++.|+|-|..||+++.-++..|++|..++|+.
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~ 178 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSG 178 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCc
Confidence 4679999999999999999999999999999999853
No 281
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=84.90 E-value=1.6 Score=44.50 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=31.8
Q ss_pred CCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 366 ~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~ 401 (403)
..+++++|.|+ |+.|+.++..|.+.|.+|+++.|+.
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 45789999996 8889999999999999999999875
No 282
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=84.84 E-value=6.1 Score=38.54 Aligned_cols=84 Identities=23% Similarity=0.303 Sum_probs=57.4
Q ss_pred EEEecccCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCC--------CC---chHHHHHHhcCCCcEEEEeecCCCCCC
Q 015614 13 ICAPLMAQSVEQVLSNMYQAKAE--GADVVEIRLDCINNF--------QP---GKDLEIILTKKPLPVLIVYRPKWAGGL 79 (403)
Q Consensus 13 icv~l~~~~~~e~~~~~~~~~~~--~~D~vElRlD~l~~~--------~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~ 79 (403)
+.++|.+.+.+++..-++...+. ++|.|||=+=+=... ++ .+.+..+++..++|+.+-+|.
T Consensus 93 l~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~------ 166 (300)
T TIGR01037 93 LIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP------ 166 (300)
T ss_pred EEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC------
Confidence 57999999999998777776443 499999976542210 11 234455566668898887763
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015614 80 YEGDEHKRLEALHLAEDLGADYVDFE 105 (403)
Q Consensus 80 ~~~~~~~~~~ll~~~~~~g~~yvDiE 105 (403)
+.++-.++.+.+.+.|+++|.+-
T Consensus 167 ---~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 167 ---NVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred ---ChhhHHHHHHHHHHcCCCEEEEE
Confidence 12344567777888999998874
No 283
>PRK06487 glycerate dehydrogenase; Provisional
Probab=84.80 E-value=1.5 Score=43.46 Aligned_cols=36 Identities=36% Similarity=0.444 Sum_probs=33.1
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
.+.||++.|+|-|..||+++..|+..|++|..++|.
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~ 180 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLP 180 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCC
Confidence 467999999999999999999999999999988875
No 284
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=84.77 E-value=17 Score=36.31 Aligned_cols=108 Identities=6% Similarity=0.061 Sum_probs=69.2
Q ss_pred EeecCCCCCC---CCCCHHHHHHHHHHHHHcCCcEEEE---------ecc--cc----chHHHHHHhccCCCcEEEEecc
Q 015614 70 VYRPKWAGGL---YEGDEHKRLEALHLAEDLGADYVDF---------ELK--VA----SNILGKQYSSHQSGTRFIVSCN 131 (403)
Q Consensus 70 T~R~~~eGG~---~~~~~~~~~~ll~~~~~~g~~yvDi---------El~--~~----~~~~~~l~~~~~~~~kiI~S~H 131 (403)
|+| +|++ +..+.++..++.+.+.+.|+++|.+ ... .+ .+.++.+... .+++++.+=..
T Consensus 10 TLR---DG~q~~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~-~~~~~~~~ll~ 85 (337)
T PRK08195 10 TLR---DGMHAVRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV-VKQAKIAALLL 85 (337)
T ss_pred CCC---CcCcCCCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh-CCCCEEEEEec
Confidence 555 6665 3457799999999999999999877 221 11 2334444332 34566654221
Q ss_pred CCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEE
Q 015614 132 LDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYS 187 (403)
Q Consensus 132 ~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~ 187 (403)
|..... +-++++.+.|.|++++++..+..+......+...+....+.+..
T Consensus 86 -----pg~~~~-~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l 135 (337)
T PRK08195 86 -----PGIGTV-DDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFL 135 (337)
T ss_pred -----cCcccH-HHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEE
Confidence 211122 34688888999999999988777777777777766665554433
No 285
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=84.75 E-value=15 Score=34.71 Aligned_cols=82 Identities=13% Similarity=0.162 Sum_probs=51.7
Q ss_pred EeecCCCCCC---CCCCHHHHHHHHHHHHHcCCcEEEEeccccc-------h---HHHHHHhccCCCcEEEEeccCCCCC
Q 015614 70 VYRPKWAGGL---YEGDEHKRLEALHLAEDLGADYVDFELKVAS-------N---ILGKQYSSHQSGTRFIVSCNLDCET 136 (403)
Q Consensus 70 T~R~~~eGG~---~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~-------~---~~~~l~~~~~~~~kiI~S~H~f~~t 136 (403)
|+| +|++ +..+.++..++++.+.+.|+++|++=.-.+. + .++.+... .++.++.+ +. +
T Consensus 4 tlR---DG~q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~-~~~~~~~~--l~---~ 74 (265)
T cd03174 4 TLR---DGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKL-VPNVKLQA--LV---R 74 (265)
T ss_pred CCC---CcccCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhc-cCCcEEEE--Ec---c
Confidence 566 4554 3457799999999999999999777543322 2 22333221 12344422 11 1
Q ss_pred CCHhHHHHHHHHHHHcCCCEEEEEeecC
Q 015614 137 PSEEDLGYLVSRMQATGADIIKLVFSVN 164 (403)
Q Consensus 137 p~~~~l~~~~~~~~~~gadivKia~~~~ 164 (403)
.. .+.++++.+.|.|.+.+.....
T Consensus 75 ~~----~~~i~~a~~~g~~~i~i~~~~s 98 (265)
T cd03174 75 NR----EKGIERALEAGVDEVRIFDSAS 98 (265)
T ss_pred Cc----hhhHHHHHhCCcCEEEEEEecC
Confidence 11 5567888888999999998877
No 286
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=84.66 E-value=6.6 Score=39.35 Aligned_cols=75 Identities=21% Similarity=0.245 Sum_probs=50.3
Q ss_pred HHHHHhcCCCEEEEEe--cCC-----CCC-C---C-------------chHHHHHHhcCCCcEEEEeecCC----CCCCC
Q 015614 29 MYQAKAEGADVVEIRL--DCI-----NNF-Q---P-------------GKDLEIILTKKPLPVLIVYRPKW----AGGLY 80 (403)
Q Consensus 29 ~~~~~~~~~D~vElRl--D~l-----~~~-~---~-------------~~~l~~l~~~~~~PiI~T~R~~~----eGG~~ 80 (403)
+..+.+.|.|.|||-. -|| .+. + + .+.+..+|+....++++.+|-.. +||.
T Consensus 147 A~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~- 225 (343)
T cd04734 147 ARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGL- 225 (343)
T ss_pred HHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCC-
Confidence 4455678999999998 332 211 1 1 14555667777778888888442 2332
Q ss_pred CCCHHHHHHHHHHHHHcC-CcEEEEec
Q 015614 81 EGDEHKRLEALHLAEDLG-ADYVDFEL 106 (403)
Q Consensus 81 ~~~~~~~~~ll~~~~~~g-~~yvDiEl 106 (403)
+.++-+++.+.+.+.| +|||+|--
T Consensus 226 --~~~e~~~~~~~l~~~G~vd~i~vs~ 250 (343)
T cd04734 226 --SPDEALEIAARLAAEGLIDYVNVSA 250 (343)
T ss_pred --CHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 4567788888888998 89998843
No 287
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=84.66 E-value=16 Score=35.03 Aligned_cols=104 Identities=7% Similarity=-0.003 Sum_probs=64.9
Q ss_pred EEeecCCCCCC---CCCCHHHHHHHHHHHHHcCCcEEEEecc-----------c----cchHHHHHHhccCCCcEEEEec
Q 015614 69 IVYRPKWAGGL---YEGDEHKRLEALHLAEDLGADYVDFELK-----------V----ASNILGKQYSSHQSGTRFIVSC 130 (403)
Q Consensus 69 ~T~R~~~eGG~---~~~~~~~~~~ll~~~~~~g~~yvDiEl~-----------~----~~~~~~~l~~~~~~~~kiI~S~ 130 (403)
.|+| +|++ +..+.++..++++...+.|+++|++=.. . +.+.++.+... .+++|+.+-.
T Consensus 6 ~TlR---DG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~-~~~~~~~~~~ 81 (263)
T cd07943 6 VTLR---DGMHAVRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA-LKQAKLGVLL 81 (263)
T ss_pred CCCC---cCcccCCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHh-ccCCEEEEEe
Confidence 3556 5665 3457799999999999999999777310 1 12334445322 2467764332
Q ss_pred cCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCC
Q 015614 131 NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVP 182 (403)
Q Consensus 131 H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p 182 (403)
+. ..+. .+-++++.+.|.|++.+....++........+.....+..
T Consensus 82 ~~--~~~~----~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~ 127 (263)
T cd07943 82 LP--GIGT----VDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMD 127 (263)
T ss_pred cC--CccC----HHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCe
Confidence 21 1111 1336777788999999999888776666666665555543
No 288
>PLN03139 formate dehydrogenase; Provisional
Probab=84.55 E-value=1.8 Score=44.22 Aligned_cols=38 Identities=26% Similarity=0.239 Sum_probs=34.5
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
..+.|+++.|+|.|..|++++..|...|++|..++|+.
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~ 232 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLK 232 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCC
Confidence 35789999999999999999999999999999999864
No 289
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=84.51 E-value=1 Score=43.93 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=28.6
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~ 401 (403)
++++++|+|+|+.|..++..++..|+ .|.+++++.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~ 179 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNP 179 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 36789999999999999988888999 577766553
No 290
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=84.41 E-value=4.4 Score=40.19 Aligned_cols=50 Identities=18% Similarity=0.377 Sum_probs=38.8
Q ss_pred CCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEE
Q 015614 134 CETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIA 185 (403)
Q Consensus 134 ~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~i~ 185 (403)
..|-+.+.-.+++.++.+.|||||++++. +.++...+-+...+.+.|+|+
T Consensus 30 T~T~Dv~aTv~QI~~L~~aG~dIVRvtv~--~~e~A~A~~~Ik~~~~vPLVa 79 (361)
T COG0821 30 TDTADVEATVAQIKALERAGCDIVRVTVP--DMEAAEALKEIKQRLNVPLVA 79 (361)
T ss_pred CCcccHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhCCCCEEE
Confidence 34445566788888999999999999987 667776776776777889875
No 291
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=84.31 E-value=1 Score=44.17 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=31.2
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCe-EEEEecCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFG 402 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~-i~v~nR~~~ 402 (403)
.+.+++|+|+|+.+.+++..++..|++ |+++.++.+
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~ 199 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPE 199 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 478999999999999999989999996 988887643
No 292
>PLN02686 cinnamoyl-CoA reductase
Probab=84.26 E-value=1.5 Score=44.06 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=32.4
Q ss_pred CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~ 401 (403)
...++|+++|.|+ |+.|++++..|.+.|++|+++.|+.
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~ 87 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQ 87 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3456899999996 8999999999999999988877763
No 293
>PRK05855 short chain dehydrogenase; Validated
Probab=84.25 E-value=1.1 Score=47.04 Aligned_cols=37 Identities=43% Similarity=0.706 Sum_probs=32.7
Q ss_pred CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~ 401 (403)
...+++++|.|+ ||.|++++..|.+.|++|.++.|+.
T Consensus 312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~ 349 (582)
T PRK05855 312 PFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDE 349 (582)
T ss_pred cCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 456789999995 8999999999999999999999974
No 294
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=84.25 E-value=34 Score=31.54 Aligned_cols=84 Identities=23% Similarity=0.258 Sum_probs=50.3
Q ss_pred EEEecccCCHHHHHHHHHHHHhcCCCEEE---EEecCCCCCCCchHHHHHH--hcCCCcEEEEeecCCCCCCCCCCHHHH
Q 015614 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVE---IRLDCINNFQPGKDLEIIL--TKKPLPVLIVYRPKWAGGLYEGDEHKR 87 (403)
Q Consensus 13 icv~l~~~~~~e~~~~~~~~~~~~~D~vE---lRlD~l~~~~~~~~l~~l~--~~~~~PiI~T~R~~~eGG~~~~~~~~~ 87 (403)
+..|..+-+-..++.... ..|+|.+- ++.+.+..... +...+. ...+.|+++.+... +.++.
T Consensus 3 ~~aPm~~~~~~~fR~l~~---~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~qi~g~--------~~~~~ 69 (231)
T cd02801 3 ILAPMVGVTDLPFRLLCR---RYGADLVYTEMISAKALLRGNR--KRLRLLTRNPEERPLIVQLGGS--------DPETL 69 (231)
T ss_pred EeCCCCCCcCHHHHHHHH---HHCCCEEEecCEEEhhhhhcCH--HHHHhhccCccCCCEEEEEcCC--------CHHHH
Confidence 344555555455554443 35688876 56665543221 222222 23478999888732 45667
Q ss_pred HHHHHHHHHcCCcEEEEecccc
Q 015614 88 LEALHLAEDLGADYVDFELKVA 109 (403)
Q Consensus 88 ~~ll~~~~~~g~~yvDiEl~~~ 109 (403)
.+..+.+.+.|++.|||-...+
T Consensus 70 ~~aa~~~~~aG~d~ieln~g~p 91 (231)
T cd02801 70 AEAAKIVEELGADGIDLNMGCP 91 (231)
T ss_pred HHHHHHHHhcCCCEEEEeCCCC
Confidence 7777788888999999976553
No 295
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=84.24 E-value=19 Score=36.17 Aligned_cols=106 Identities=20% Similarity=0.176 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCC---chHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015614 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQP---GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~ 99 (403)
.++...++.++..|+++|-+|.=-+.+.+. ...+..+-+..+.++|+.-| ...+.+.++
T Consensus 157 ~~ll~~l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~~~~~~lIIND~------------------vdlAl~~~a 218 (347)
T PRK02615 157 ENLLEVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCHRYGALFIVNDR------------------VDIALAVDA 218 (347)
T ss_pred hhHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeCh------------------HHHHHHcCC
Confidence 456667888889999999999444432111 12333444455788887733 234566788
Q ss_pred cEEEEecccc-chHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614 100 DYVDFELKVA-SNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (403)
Q Consensus 100 ~yvDiEl~~~-~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi 159 (403)
+.|=+..... ....+++ ..++..|-+|.|+ .++ ..++.+.|||++.+
T Consensus 219 DGVHLgq~dl~~~~aR~l---lg~~~iIG~S~Hs------~~e----~~~A~~~GaDYI~l 266 (347)
T PRK02615 219 DGVHLGQEDLPLAVARQL---LGPEKIIGRSTTN------PEE----MAKAIAEGADYIGV 266 (347)
T ss_pred CEEEeChhhcCHHHHHHh---cCCCCEEEEecCC------HHH----HHHHHHcCCCEEEE
Confidence 8887754322 1222222 2234456678885 233 34555679999987
No 296
>PTZ00188 adrenodoxin reductase; Provisional
Probab=84.02 E-value=1.7 Score=45.81 Aligned_cols=35 Identities=17% Similarity=0.009 Sum_probs=30.2
Q ss_pred CCCeEEEEcchhHHHHHHHHHH-HCCCeEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~-~~g~~i~v~nR~~ 401 (403)
..++|+|+|+|.+|-.+|..|. +.|++|+|+.|.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p 73 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP 73 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4679999999999999988764 6788999999875
No 297
>PRK06932 glycerate dehydrogenase; Provisional
Probab=83.99 E-value=1.8 Score=42.91 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=33.1
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.+.||++.|+|-|..||+++..|+.+|++|..++|..
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~ 180 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKG 180 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCc
Confidence 4679999999999999999999999999998888753
No 298
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=83.96 E-value=49 Score=33.09 Aligned_cols=196 Identities=16% Similarity=0.201 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEE---------ec-CCCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHH
Q 015614 23 EQVLSNMYQAKAEGADVVEIR---------LD-CINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEAL 91 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vElR---------lD-~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll 91 (403)
++.+.-++...+.|+|.||+- ++ -+...++.+.++.+++.. +.++..-+++. .. . .+-+
T Consensus 25 ~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg----~~--~----~~dl 94 (337)
T PRK08195 25 EQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPG----IG--T----VDDL 94 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccC----cc--c----HHHH
Confidence 333443444456799999993 22 122223345666665443 34444434421 11 1 2336
Q ss_pred HHHHHcCCcEEEEeccccc-hHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--CHh
Q 015614 92 HLAEDLGADYVDFELKVAS-NILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--DIT 167 (403)
Q Consensus 92 ~~~~~~g~~yvDiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~--~~~ 167 (403)
+.+.+.|++.|-|-....+ +...+.. ..+..+.++.++.-+. ...+.+++.++.+++.++|+|.+-++=+.- +++
T Consensus 95 ~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a-~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~ 173 (337)
T PRK08195 95 KMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMS-HMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPE 173 (337)
T ss_pred HHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEec-cCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHH
Confidence 8888999999877654433 1222222 3344456666654432 223568899999999999999987775554 588
Q ss_pred HHHHHHHHhccC---CCCEEEE-EcCcc--chhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614 168 EIARIFQLLSHC---QVPIIAY-SVGER--GLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (403)
Q Consensus 168 D~~~ll~~~~~~---~~p~i~~-~MG~~--G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~ 230 (403)
|+.++.+.+.+. +.|+ .+ +=-.. +...-+..-.-|....=+++.. +...|+++++++...++
T Consensus 174 ~v~~~v~~l~~~l~~~i~i-g~H~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG~~aGN~~tE~lv~~L~ 242 (337)
T PRK08195 174 DVRDRVRALRAALKPDTQV-GFHGHNNLGLGVANSLAAVEAGATRIDGSLAGLGAGAGNTPLEVLVAVLD 242 (337)
T ss_pred HHHHHHHHHHHhcCCCCeE-EEEeCCCcchHHHHHHHHHHhCCCEEEecChhhcccccCccHHHHHHHHH
Confidence 888888776532 2332 22 10111 1111121112233333333332 34678888877665544
No 299
>PLN02602 lactate dehydrogenase
Probab=83.74 E-value=1.8 Score=43.65 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=30.5
Q ss_pred CeEEEEcchhHHHHHHHHHHHCCC--eEEEEecCCC
Q 015614 369 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFG 402 (403)
Q Consensus 369 ~~~lilGaGGaarai~~al~~~g~--~i~v~nR~~~ 402 (403)
+++.|+|+|.+|.+++|.|...|. +|.+++++.+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~ 73 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPD 73 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence 699999999999999999998885 7999998764
No 300
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=83.67 E-value=5.8 Score=38.14 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=59.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE--ecccc-------chH---HHHHHhccCCCcEEEEeccCCCCCCCHhH
Q 015614 74 KWAGGLYEGDEHKRLEALHLAEDLGADYVDF--ELKVA-------SNI---LGKQYSSHQSGTRFIVSCNLDCETPSEED 141 (403)
Q Consensus 74 ~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDi--El~~~-------~~~---~~~l~~~~~~~~kiI~S~H~f~~tp~~~~ 141 (403)
=.+||.+.. .++-.+..+..++.|+++||| +-..+ ++. +..++...+..+++.+|.|.+ +.+.
T Consensus 13 F~dg~~~~~-~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~----~~~v 87 (257)
T TIGR01496 13 FSDGGRFLS-VDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTY----RAEV 87 (257)
T ss_pred CCCCCCCCC-HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCC----CHHH
Confidence 367888743 444555566667899999999 32221 111 222222212344677898853 3333
Q ss_pred HHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcC
Q 015614 142 LGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVG 189 (403)
Q Consensus 142 l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG 189 (403)
+ +.+.+.|+|++-=+..-+ .+ +++.+..+.+.++|+|.+.
T Consensus 88 i----~~al~~G~~iINsis~~~-~~---~~~~l~~~~~~~vV~m~~~ 127 (257)
T TIGR01496 88 A----RAALEAGADIINDVSGGQ-DP---AMLEVAAEYGVPLVLMHMR 127 (257)
T ss_pred H----HHHHHcCCCEEEECCCCC-Cc---hhHHHHHHcCCcEEEEeCC
Confidence 4 334445999877654433 23 3444455678899998774
No 301
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=83.62 E-value=71 Score=34.65 Aligned_cols=206 Identities=14% Similarity=0.086 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHHHH
Q 015614 23 EQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLA 94 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~ 94 (403)
++++.-+...-+.|...+|.= +|- +...+|.+.+..+|+.. +.|+-.=+|..+==|..+.+++--..+++.+
T Consensus 26 ~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a 105 (596)
T PRK14042 26 EDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLA 105 (596)
T ss_pred HHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHHH
Confidence 444444444445688888863 332 11225567788888665 6788777887666666666777777789999
Q ss_pred HHcCCcEEEEe--ccccchHHHHHHhccCCCcEEEEe--ccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--CH
Q 015614 95 EDLGADYVDFE--LKVASNILGKQYSSHQSGTRFIVS--CNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--DI 166 (403)
Q Consensus 95 ~~~g~~yvDiE--l~~~~~~~~~l~~~~~~~~kiI~S--~H~f~~tp--~~~~l~~~~~~~~~~gadivKia~~~~--~~ 166 (403)
.+.|.+.+=|= ++..+.....+...++.+..+.++ |- ..| +.+.+.++.+++.+.|||.+=|+=|+- ++
T Consensus 106 ~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt---~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P 182 (596)
T PRK14042 106 VNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYT---TSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTP 182 (596)
T ss_pred HHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEec---CCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCH
Confidence 99998887662 222233333333233344445444 42 233 457899999999999999988887774 57
Q ss_pred hHHHHHHHHhccC-CCCEEEE--EcCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhhh
Q 015614 167 TEIARIFQLLSHC-QVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV 231 (403)
Q Consensus 167 ~D~~~ll~~~~~~-~~p~i~~--~MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~~ 231 (403)
.++.++.+.+.+. +.|+-.= ++--.|..+-+..-.-|....-+++.. +..+||++.+++...++.
T Consensus 183 ~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~glGg~tGn~~tE~lv~~L~~ 251 (596)
T PRK14042 183 TVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAGCNHIDTAISSFSGGASHPPTEALVAALTD 251 (596)
T ss_pred HHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhCCCEEEeccccccCCCCcHhHHHHHHHHHh
Confidence 8888888776543 5554211 122223333333333344444344432 245799999888776653
No 302
>PRK07201 short chain dehydrogenase; Provisional
Probab=83.59 E-value=1.2 Score=48.16 Aligned_cols=38 Identities=34% Similarity=0.578 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
.+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.+
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~ 406 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGE 406 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 456899999995 88999999999999999999998753
No 303
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=83.54 E-value=42 Score=31.96 Aligned_cols=121 Identities=16% Similarity=0.120 Sum_probs=72.5
Q ss_pred HHHHHHhcCC-CcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCC
Q 015614 55 DLEIILTKKP-LPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLD 133 (403)
Q Consensus 55 ~l~~l~~~~~-~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f 133 (403)
.++.+++..+ .|+|+=.- .|... +.+.-.+..++.++.|++.|-||-.. +..+.+...+....-|| -+-+
T Consensus 63 ~~~~I~r~~~~~pviaD~~----~G~g~-~~~~~~~~~~~l~~aGa~gv~iED~~--~~~~~i~ai~~a~i~Vi-aRtd- 133 (240)
T cd06556 63 HVRAVRRGAPLALIVADLP----FGAYG-APTAAFELAKTFMRAGAAGVKIEGGE--WHIETLQMLTAAAVPVI-AHTG- 133 (240)
T ss_pred HHHHHHhhCCCCCEEEeCC----CCCCc-CHHHHHHHHHHHHHcCCcEEEEcCcH--HHHHHHHHHHHcCCeEE-EEeC-
Confidence 3344555554 69997653 45443 44666777888899999999999753 22222322222334333 2222
Q ss_pred CCCC-----------------CHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcCc
Q 015614 134 CETP-----------------SEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGE 190 (403)
Q Consensus 134 ~~tp-----------------~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~ 190 (403)
-+| ..+++.+......+.|||.+=+=.. +.++..+ +....+.|++++++|.
T Consensus 134 -~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~--~~e~~~~---i~~~~~~P~~~~gag~ 201 (240)
T cd06556 134 -LTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV--PVELAKQ---ITEALAIPLAGIGAGS 201 (240)
T ss_pred -CchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHH---HHHhCCCCEEEEecCc
Confidence 222 2345555566667889998877533 5555544 4445678999988886
No 304
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=83.36 E-value=1.7 Score=45.44 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=32.9
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
...+++|.|+|+|.++.++++-|.+.|+.|+|+.|.+
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~ 156 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA 156 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC
Confidence 3457999999999999999999999999999988753
No 305
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=83.36 E-value=46 Score=32.34 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=28.7
Q ss_pred CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcC--CcEEEEeccccc
Q 015614 63 KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG--ADYVDFELKVAS 110 (403)
Q Consensus 63 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g--~~yvDiEl~~~~ 110 (403)
.+.|+++.+.. .+.+++.+..+.+.+.+ +++||+-+..+.
T Consensus 89 ~~~pl~~qi~g--------~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~ 130 (300)
T TIGR01037 89 FPTPLIASVYG--------SSVEEFAEVAEKLEKAPPYVDAYELNLSCPH 130 (300)
T ss_pred CCCcEEEEeec--------CCHHHHHHHHHHHHhccCccCEEEEECCCCC
Confidence 35799999862 24567777777776653 899999887654
No 306
>PRK12999 pyruvate carboxylase; Reviewed
Probab=83.25 E-value=82 Score=36.95 Aligned_cols=208 Identities=13% Similarity=0.083 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHhc--CCCEEEEEe----cC---CCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHH
Q 015614 23 EQVLSNMYQAKAE--GADVVEIRL----DC---INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALH 92 (403)
Q Consensus 23 ~e~~~~~~~~~~~--~~D~vElRl----D~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 92 (403)
++++.-++..-.. |.+.+|.=- |. +...++.+.+..+|+.. +.|+-.-+|..+==|..+.++.-..++++
T Consensus 555 ~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~ 634 (1146)
T PRK12999 555 KDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVR 634 (1146)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHHHH
Confidence 3333333333345 899999853 21 11224567788888755 67777778865554544556666667899
Q ss_pred HHHHcCCcEEEEeccccc--hHHHHHHhccCCC--cEEEEecc----CCCCCC-CHhHHHHHHHHHHHcCCCEEEEEeec
Q 015614 93 LAEDLGADYVDFELKVAS--NILGKQYSSHQSG--TRFIVSCN----LDCETP-SEEDLGYLVSRMQATGADIIKLVFSV 163 (403)
Q Consensus 93 ~~~~~g~~yvDiEl~~~~--~~~~~l~~~~~~~--~kiI~S~H----~f~~tp-~~~~l~~~~~~~~~~gadivKia~~~ 163 (403)
.+.+.|++.+-|=....+ .....+...+..+ ..+-+||- |...+. +.+.+.++.+++.+.|||++-|+=|+
T Consensus 635 ~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~ 714 (1146)
T PRK12999 635 EAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMA 714 (1146)
T ss_pred HHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 999999999887533332 1111111122222 44666665 333332 45678899999999999999888777
Q ss_pred C--CHhHHHHHHHHhccC-CCCEEEE--EcCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614 164 N--DITEIARIFQLLSHC-QVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (403)
Q Consensus 164 ~--~~~D~~~ll~~~~~~-~~p~i~~--~MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~ 230 (403)
- ++.+...+.+.+.+. +.|+-.= ++--.+..+-+..-..|....=+++.. +--.||++++++...++
T Consensus 715 G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~av~glg~~tgn~~le~vv~~L~ 787 (1146)
T PRK12999 715 GLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAGVDIVDVAVASMSGLTSQPSLNSIVAALE 787 (1146)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHhCCCEEEecchhhcCCcCCHHHHHHHHHHH
Confidence 4 577887777765432 4443211 111122222332223343333333322 23467777777665554
No 307
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=83.22 E-value=12 Score=37.67 Aligned_cols=80 Identities=16% Similarity=0.048 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCCEEEEEecC-------CCCC-C---C-------------chHHHHHHhcCCCcEEEEeecCC-CCCCCC
Q 015614 27 SNMYQAKAEGADVVEIRLDC-------INNF-Q---P-------------GKDLEIILTKKPLPVLIVYRPKW-AGGLYE 81 (403)
Q Consensus 27 ~~~~~~~~~~~D~vElRlD~-------l~~~-~---~-------------~~~l~~l~~~~~~PiI~T~R~~~-eGG~~~ 81 (403)
..++.+.+.|.|.|||---. |.+. + + .+.++.+|+....++.+-+|-.. |...--
T Consensus 141 ~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g 220 (353)
T cd02930 141 RCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGG 220 (353)
T ss_pred HHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCC
Confidence 33445567899999997632 1111 1 0 14566677766667777777543 211111
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEec
Q 015614 82 GDEHKRLEALHLAEDLGADYVDFEL 106 (403)
Q Consensus 82 ~~~~~~~~ll~~~~~~g~~yvDiEl 106 (403)
.+.++-+++.+.+.+.|+|||+|-.
T Consensus 221 ~~~~e~~~i~~~Le~~G~d~i~vs~ 245 (353)
T cd02930 221 STWEEVVALAKALEAAGADILNTGI 245 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 2556778888898899999999854
No 308
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=83.22 E-value=40 Score=31.52 Aligned_cols=150 Identities=19% Similarity=0.200 Sum_probs=81.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC----CCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHH
Q 015614 19 AQSVEQVLSNMYQAKAEGADVVEIRLDCINNF----QPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLA 94 (403)
Q Consensus 19 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~----~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~ 94 (403)
..++.|....+ .+.|+|.+-+| |+=... .....++.+.+....|+++. ||-... + -.+.+
T Consensus 31 ~~~~~e~a~~~---~~~G~~~l~i~-dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~------GGi~~~--~----~~~~~ 94 (241)
T PRK13585 31 YGDPVEVAKRW---VDAGAETLHLV-DLDGAFEGERKNAEAIEKIIEAVGVPVQLG------GGIRSA--E----DAASL 94 (241)
T ss_pred CCCHHHHHHHH---HHcCCCEEEEE-echhhhcCCcccHHHHHHHHHHcCCcEEEc------CCcCCH--H----HHHHH
Confidence 34666665544 56799999888 543211 22345666767778999973 554322 1 22445
Q ss_pred HHcCCcEEEEeccccc--hHHHHHHhccCCCcEEEEec--cC-------CCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015614 95 EDLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVSC--NL-------DCETPSEEDLGYLVSRMQATGADIIKLVFSV 163 (403)
Q Consensus 95 ~~~g~~yvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~--H~-------f~~tp~~~~l~~~~~~~~~~gadivKia~~~ 163 (403)
++.|++.|.+--.... +.+.++... -+..++++|. ++ +.... ..+..+..+++.+.|++-+=+.-..
T Consensus 95 ~~~Ga~~v~iGs~~~~~~~~~~~i~~~-~g~~~i~~sid~~~~~v~~~g~~~~~-~~~~~~~~~~~~~~G~~~i~~~~~~ 172 (241)
T PRK13585 95 LDLGVDRVILGTAAVENPEIVRELSEE-FGSERVMVSLDAKDGEVVIKGWTEKT-GYTPVEAAKRFEELGAGSILFTNVD 172 (241)
T ss_pred HHcCCCEEEEChHHhhChHHHHHHHHH-hCCCcEEEEEEeeCCEEEECCCcccC-CCCHHHHHHHHHHcCCCEEEEEeec
Confidence 5689999988654432 344444422 1344676553 21 11111 1245666777778899866443221
Q ss_pred C----CHhHHHHHHHHhccCCCCEEEE
Q 015614 164 N----DITEIARIFQLLSHCQVPIIAY 186 (403)
Q Consensus 164 ~----~~~D~~~ll~~~~~~~~p~i~~ 186 (403)
. +..|...+-++....+.|+++-
T Consensus 173 ~~g~~~g~~~~~i~~i~~~~~iPvia~ 199 (241)
T PRK13585 173 VEGLLEGVNTEPVKELVDSVDIPVIAS 199 (241)
T ss_pred CCCCcCCCCHHHHHHHHHhCCCCEEEe
Confidence 1 1223333444444456787654
No 309
>PLN02256 arogenate dehydrogenase
Probab=83.16 E-value=2 Score=42.39 Aligned_cols=35 Identities=20% Similarity=0.113 Sum_probs=31.6
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
++.++.|+|.|..|.+++.+|.+.|.+|++++|+.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 46789999999999999999999998999999874
No 310
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=83.01 E-value=15 Score=34.26 Aligned_cols=199 Identities=12% Similarity=0.106 Sum_probs=110.3
Q ss_pred CCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHH
Q 015614 9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKR 87 (403)
Q Consensus 9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~ 87 (403)
..|++=+-|-..+++++...++++... +|.||.---++...- .+.++.+|+.. +.+++.-..+- +.|..
T Consensus 2 ~~p~LQvALD~~~l~~Ai~~a~~v~~~-~diiEvGTpLik~eG-~~aV~~lr~~~pd~~IvAD~Kt~-D~G~~------- 71 (217)
T COG0269 2 SPPLLQVALDLLDLEEAIEIAEEVADY-VDIIEVGTPLIKAEG-MRAVRALRELFPDKIIVADLKTA-DAGAI------- 71 (217)
T ss_pred CCcceEeeecccCHHHHHHHHHHhhhc-ceEEEeCcHHHHHhh-HHHHHHHHHHCCCCeEEeeeeec-chhHH-------
Confidence 357788899999999999999987665 999998666555322 25677888765 66677666654 33321
Q ss_pred HHHHHHHHHcCCcEEEEeccccchHHHHH-HhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH
Q 015614 88 LEALHLAEDLGADYVDFELKVASNILGKQ-YSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI 166 (403)
Q Consensus 88 ~~ll~~~~~~g~~yvDiEl~~~~~~~~~l-~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~ 166 (403)
..+++++.|+|++-|=--.+..-+... ..+++.+..+.+-.-+ .+++ .+..+...++|.|++=+=..-
T Consensus 72 --e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~---~~~~---~~~~~~l~~~gvd~~~~H~g~--- 140 (217)
T COG0269 72 --EARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIG---VWDP---EQRAKWLKELGVDQVILHRGR--- 140 (217)
T ss_pred --HHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeec---CCCH---HHHHHHHHHhCCCEEEEEecc---
Confidence 236788999999887544443322222 2334445555443332 2223 333344444676655332211
Q ss_pred hHHHHHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhccccccceEEeeecc
Q 015614 167 TEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISK 246 (403)
Q Consensus 167 ~D~~~ll~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~~~~~~~~~~~liG~ 246 (403)
|... . +.. -+-.....+-++... |..+ +--|-++.+++..+.. +. ....++|.
T Consensus 141 -D~q~---~----G~~---~~~~~l~~ik~~~~~--g~~v--------AVaGGI~~~~i~~~~~---~~---~~ivIvGr 193 (217)
T COG0269 141 -DAQA---A----GKS---WGEDDLEKIKKLSDL--GAKV--------AVAGGITPEDIPLFKG---IG---ADIVIVGR 193 (217)
T ss_pred -cHhh---c----CCC---ccHHHHHHHHHhhcc--CceE--------EEecCCCHHHHHHHhc---CC---CCEEEECc
Confidence 1100 0 000 000111222232221 1101 3345588888875543 22 35668899
Q ss_pred CCcccCCHH
Q 015614 247 PVGHSKGPI 255 (403)
Q Consensus 247 pi~hS~SP~ 255 (403)
.|.+|..|.
T Consensus 194 aIt~a~dp~ 202 (217)
T COG0269 194 AITGAKDPA 202 (217)
T ss_pred hhcCCCCHH
Confidence 999999997
No 311
>PTZ00367 squalene epoxidase; Provisional
Probab=83.00 E-value=1.5 Score=47.07 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=31.2
Q ss_pred CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
...++|+|+|-+|.+++.+|++.|.+|.|+.|+.
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 3579999999999999999999999999999875
No 312
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=82.94 E-value=4.6 Score=40.45 Aligned_cols=49 Identities=16% Similarity=0.409 Sum_probs=33.2
Q ss_pred CCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhcc-----CCCCEEE
Q 015614 135 ETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH-----CQVPIIA 185 (403)
Q Consensus 135 ~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~-----~~~p~i~ 185 (403)
.|-+.+...+++.++.+.|||||++|+. +.++...+-+...+ .++|++|
T Consensus 26 ~t~Dv~atv~QI~~L~~aGceivRvavp--~~~~a~al~~I~~~l~~~g~~iPlVA 79 (359)
T PF04551_consen 26 DTRDVEATVAQIKRLEEAGCEIVRVAVP--DMEAAEALKEIKKRLRALGSPIPLVA 79 (359)
T ss_dssp -TT-HHHHHHHHHHHHHCT-SEEEEEE---SHHHHHHHHHHHHHHHCTT-SS-EEE
T ss_pred CcccHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHHHHHHHHhhccCCCCCCeee
Confidence 3445677888899999999999999998 66666666555554 5788876
No 313
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.85 E-value=2 Score=44.36 Aligned_cols=36 Identities=42% Similarity=0.642 Sum_probs=31.7
Q ss_pred CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecC
Q 015614 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~ 400 (403)
+.++++++|.|+ ||.+++++..|.+.|++|.+++|.
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~ 243 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVP 243 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 356899999997 999999999999999998888774
No 314
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=82.78 E-value=10 Score=38.51 Aligned_cols=78 Identities=23% Similarity=0.119 Sum_probs=47.0
Q ss_pred HHHHHhcCCCEEEEEe---cCC--------CCC-CC-------------chHHHHHHhcCCCcEEEEeecCC--------
Q 015614 29 MYQAKAEGADVVEIRL---DCI--------NNF-QP-------------GKDLEIILTKKPLPVLIVYRPKW-------- 75 (403)
Q Consensus 29 ~~~~~~~~~D~vElRl---D~l--------~~~-~~-------------~~~l~~l~~~~~~PiI~T~R~~~-------- 75 (403)
++.+.+.|.|.|||-. -|| .+. ++ .+.++.+|+...-.+++.+|-..
T Consensus 156 A~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~ 235 (382)
T cd02931 156 AVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLR 235 (382)
T ss_pred HHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccc
Confidence 3444678999999997 443 111 11 14556666666444455555221
Q ss_pred -------CCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015614 76 -------AGGLYEGDEHKRLEALHLAEDLGADYVDFEL 106 (403)
Q Consensus 76 -------eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl 106 (403)
|...--.+.++..++++.+.+.|+|||+|-.
T Consensus 236 ~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~ 273 (382)
T cd02931 236 QGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDA 273 (382)
T ss_pred cccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCC
Confidence 1111112457788899999889999999854
No 315
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=82.70 E-value=1.4 Score=43.71 Aligned_cols=36 Identities=42% Similarity=0.621 Sum_probs=30.7
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
.+++++|+|+|+.+.+++..++..|++|+++.++.+
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~ 201 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPE 201 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHH
Confidence 478999999999999999988889998887777643
No 316
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=82.68 E-value=45 Score=31.76 Aligned_cols=191 Identities=16% Similarity=0.211 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCc
Q 015614 22 VEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGAD 100 (403)
Q Consensus 22 ~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~ 100 (403)
.++.+.-++...+.|+|.||+-+=.+.+ ++.+.+..+++.. +..+..-.|.. . +-++.+.+.|++
T Consensus 19 ~~~k~~i~~~L~~~Gv~~iE~g~p~~~~-~~~e~~~~l~~~~~~~~~~~~~r~~---------~----~~v~~a~~~g~~ 84 (259)
T cd07939 19 REEKLAIARALDEAGVDEIEVGIPAMGE-EEREAIRAIVALGLPARLIVWCRAV---------K----EDIEAALRCGVT 84 (259)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCH-HHHHHHHHHHhcCCCCEEEEeccCC---------H----HHHHHHHhCCcC
Confidence 3444444445556799999996422221 1124555665432 33333333321 1 124667788999
Q ss_pred EEEEeccccchH------------H---HHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC
Q 015614 101 YVDFELKVASNI------------L---GKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN 164 (403)
Q Consensus 101 yvDiEl~~~~~~------------~---~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~ 164 (403)
+|-+-....+.. + .+.. ..+..+..+..+.=+...+ +.+++.++++++.+.|+|.+-++=+.-
T Consensus 85 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~i~l~DT~G 163 (259)
T cd07939 85 AVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRA-DPDFLIEFAEVAQEAGADRLRFADTVG 163 (259)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCC-CHHHHHHHHHHHHHCCCCEEEeCCCCC
Confidence 888865443321 1 1122 2344455665555443222 467899999999999999887775553
Q ss_pred --CHhHHHHHHHHhcc-CCCCEEE-----EEcCccchhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614 165 --DITEIARIFQLLSH-CQVPIIA-----YSVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (403)
Q Consensus 165 --~~~D~~~ll~~~~~-~~~p~i~-----~~MG~~G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~ 230 (403)
++.++..+...+.+ .+.|+-. ++||..--+.=+ .-|..+.=+++.+ +-..|+++.+++...++
T Consensus 164 ~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~An~laAi---~aG~~~vd~s~~G~G~~aGN~~tE~lv~~l~ 235 (259)
T cd07939 164 ILDPFTTYELIRRLRAATDLPLEFHAHNDLGLATANTLAAV---RAGATHVSVTVNGLGERAGNAALEEVVMALK 235 (259)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHH---HhCCCEEEEecccccccccCcCHHHHHHHHH
Confidence 57888888776543 2333211 112221111112 1233232233322 24578888877766554
No 317
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=82.56 E-value=25 Score=37.12 Aligned_cols=134 Identities=22% Similarity=0.251 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHH---hcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCc
Q 015614 24 QVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGAD 100 (403)
Q Consensus 24 e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~ 100 (403)
++...++.++..|+++|-||.=.+......+....++ +..+.++|+.-| .+.+.+.|++
T Consensus 308 ~~~~~l~~~l~~Gv~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~liind~------------------~~lA~~~~ad 369 (502)
T PLN02898 308 STVDAVRAAIEGGATIVQLREKEAETREFIEEAKACLAICRSYGVPLLINDR------------------VDVALACDAD 369 (502)
T ss_pred hHHHHHHHHHHcCCCEEEEccCCCCHHHHHHHHHHHHHHHHHhCCEEEEcCh------------------HHHHHhcCCC
Confidence 3555677788899999999954333211112233333 345778887633 2345667888
Q ss_pred EEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE--EeecCCHh-----HHHHHH
Q 015614 101 YVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL--VFSVNDIT-----EIARIF 173 (403)
Q Consensus 101 yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi--a~~~~~~~-----D~~~ll 173 (403)
.|=+...... ....+.....+.-|=+|.|+ .++ ..++.+.|+|++++ ++...+.. ....+-
T Consensus 370 GvHl~~~d~~--~~~~r~~~~~~~~iG~S~h~------~~e----~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~ 437 (502)
T PLN02898 370 GVHLGQSDMP--VRLARSLLGPGKIIGVSCKT------PEQ----AEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLR 437 (502)
T ss_pred EEEeChHhcC--HHHHHHhcCCCCEEEEeCCC------HHH----HHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHH
Confidence 7766543211 11122111223333378885 233 35556689999996 44444422 222222
Q ss_pred HHhccCCCCEEEEE
Q 015614 174 QLLSHCQVPIIAYS 187 (403)
Q Consensus 174 ~~~~~~~~p~i~~~ 187 (403)
.+....++|+++++
T Consensus 438 ~~~~~~~~Pv~aiG 451 (502)
T PLN02898 438 EVCEASKLPVVAIG 451 (502)
T ss_pred HHHHcCCCCEEEEC
Confidence 33334477877763
No 318
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.53 E-value=2.1 Score=41.82 Aligned_cols=38 Identities=32% Similarity=0.707 Sum_probs=32.5
Q ss_pred CCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 364 ~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~ 401 (403)
...+|+.|||=|+ +|-||+++..++++|+++.+++.+.
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~ 72 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINK 72 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccc
Confidence 3567899999986 5779999999999999888888764
No 319
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=82.50 E-value=1.7 Score=42.89 Aligned_cols=36 Identities=28% Similarity=0.299 Sum_probs=30.1
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
.|.+++|.|+|+.+.+++..++..|++|+.+.++.+
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~ 200 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAA 200 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChH
Confidence 478999999999999888877888998877777654
No 320
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=82.49 E-value=44 Score=31.41 Aligned_cols=86 Identities=13% Similarity=0.190 Sum_probs=58.3
Q ss_pred CeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-CC-----chHHHHHHhcC-CCcEEEEeecCCCCCCCCC
Q 015614 10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-QP-----GKDLEIILTKK-PLPVLIVYRPKWAGGLYEG 82 (403)
Q Consensus 10 ~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-~~-----~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~ 82 (403)
+++|+.||..-|...+.+++++..+.|+|.+=+ |..+.. -| .+.++.+++.+ +.|+=+.+-..
T Consensus 6 ~~~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~--DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~-------- 75 (228)
T PTZ00170 6 KAIIAPSILAADFSKLADEAQDVLSGGADWLHV--DVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVS-------- 75 (228)
T ss_pred CCEEehhHhhcCHHHHHHHHHHHHHcCCCEEEE--ecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCC--------
Confidence 788999999999988888898887788888654 776521 11 24677777766 77776665521
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeccc
Q 015614 83 DEHKRLEALHLAEDLGADYVDFELKV 108 (403)
Q Consensus 83 ~~~~~~~ll~~~~~~g~~yvDiEl~~ 108 (403)
..+.++ +.+.+.|+++|-+=...
T Consensus 76 ~p~~~i---~~~~~~Gad~itvH~ea 98 (228)
T PTZ00170 76 NPEKWV---DDFAKAGASQFTFHIEA 98 (228)
T ss_pred CHHHHH---HHHHHcCCCEEEEeccC
Confidence 233333 55667777777664443
No 321
>PLN02740 Alcohol dehydrogenase-like
Probab=82.47 E-value=1.6 Score=43.97 Aligned_cols=36 Identities=39% Similarity=0.603 Sum_probs=31.4
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG 402 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~ 402 (403)
.+++++|+|+|+.+.+++..++.+|+ +|+++.++.+
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~ 234 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPE 234 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChH
Confidence 47899999999999999999999999 6888877654
No 322
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=82.26 E-value=1.6 Score=47.28 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=28.6
Q ss_pred CeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
..|||||+|+|+.+++..+++.|++|.|+...
T Consensus 30 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~ 61 (617)
T PTZ00139 30 YDAVVVGAGGAGLRAALGLVELGYKTACISKL 61 (617)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEecc
Confidence 46999999999999999999999999888764
No 323
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=82.18 E-value=54 Score=32.49 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=53.4
Q ss_pred CCCeeEEEecccCCHHHHHHHHHHHHhcCCCEE--EEEec-CCCCCCCchHHHHHH-hcCCCcEEEEeecCCCCCCCCCC
Q 015614 8 KNTTMICAPLMAQSVEQVLSNMYQAKAEGADVV--EIRLD-CINNFQPGKDLEIIL-TKKPLPVLIVYRPKWAGGLYEGD 83 (403)
Q Consensus 8 ~~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~v--ElRlD-~l~~~~~~~~l~~l~-~~~~~PiI~T~R~~~eGG~~~~~ 83 (403)
-+.|.+..|+.+=+--.+..... +.|+|+. |.--+ .+.-.+. .....+. .....|+++.+-. .+
T Consensus 8 ~~~~~~lAPM~g~td~~fR~l~~---~~g~~~~~temvs~~~~~~~~~-~~~~~~~~~~~~~~~~vQl~g--------~~ 75 (321)
T PRK10415 8 LRNRLIAAPMAGITDRPFRTLCY---EMGAGLTVSEMMSSNPQVWESD-KSRLRMVHIDEPGIRTVQIAG--------SD 75 (321)
T ss_pred CCCCEEecCCCCCCcHHHHHHHH---HHCCCEEEEccEEcchhhhcCH-hHHHHhccCccCCCEEEEEeC--------CC
Confidence 34578888998888877776554 4578863 53222 1111010 1111111 1224566666531 24
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccccch
Q 015614 84 EHKRLEALHLAEDLGADYVDFELKVASN 111 (403)
Q Consensus 84 ~~~~~~ll~~~~~~g~~yvDiEl~~~~~ 111 (403)
.++..+..+.+.+.|++.|||-+..|..
T Consensus 76 ~~~~~~aa~~~~~~g~d~IdlN~gCP~~ 103 (321)
T PRK10415 76 PKEMADAARINVESGAQIIDINMGCPAK 103 (321)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCHH
Confidence 5666666666777899999999988763
No 324
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=82.12 E-value=23 Score=33.96 Aligned_cols=110 Identities=23% Similarity=0.255 Sum_probs=70.1
Q ss_pred HHHHHHHHhcCCCEEEEEec--CCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEE
Q 015614 26 LSNMYQAKAEGADVVEIRLD--CINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVD 103 (403)
Q Consensus 26 ~~~~~~~~~~~~D~vElRlD--~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvD 103 (403)
...+..+...||+++=+-.| +|.. ..+.+..+++..++|+|. + + |=.+ .+ + ++.+...|+|.|=
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~f~g--~~~~l~~v~~~v~iPvl~--k---d---fi~~--~~-q-i~~a~~~GAD~Vl 138 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERFFQG--SLEYLRAARAAVSLPVLR--K---D---FIID--PY-Q-IYEARAAGADAIL 138 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCC--CHHHHHHHHHhcCCCEEe--e---e---ecCC--HH-H-HHHHHHcCCCEEE
Confidence 44455556789999944333 3332 235788888888999994 1 1 3222 23 2 5678889999998
Q ss_pred Eeccc-cchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015614 104 FELKV-ASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL 159 (403)
Q Consensus 104 iEl~~-~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKi 159 (403)
+.... ..+.+++++ ..+.-+..+++-.|+ .+|+ +++.+.|+|++=+
T Consensus 139 Li~~~l~~~~l~~li~~a~~lGl~~lvevh~------~~E~----~~A~~~gadiIgi 186 (260)
T PRK00278 139 LIVAALDDEQLKELLDYAHSLGLDVLVEVHD------EEEL----ERALKLGAPLIGI 186 (260)
T ss_pred EEeccCCHHHHHHHHHHHHHcCCeEEEEeCC------HHHH----HHHHHcCCCEEEE
Confidence 88776 333455555 344567888999997 2344 4466789987543
No 325
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=82.11 E-value=1.6 Score=47.43 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=30.5
Q ss_pred CCeEEEEcchhHHHHHHHHHHHC-CCeEEEEecCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSR-GARVVIFDIDF 401 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~-g~~i~v~nR~~ 401 (403)
...|+|+|||-+|.+++..|++. |+++.|+.|.+
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~ 66 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence 35799999999999999999995 99999999864
No 326
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=81.98 E-value=51 Score=31.81 Aligned_cols=200 Identities=16% Similarity=0.095 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCC--chHHHHHHhcC--CCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015614 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQP--GKDLEIILTKK--PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG 98 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~--~~~l~~l~~~~--~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g 98 (403)
++.+.-++...+.|+|.||+=. ...++ .+.+..+++.. +.++..-.|....+-. ...+ .-++.+++.|
T Consensus 20 e~k~~i~~~L~~~Gv~~IE~G~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~----~~~~~a~~~g 91 (273)
T cd07941 20 EDKLRIARKLDELGVDYIEGGW---PGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVK-AEED----PNLQALLEAG 91 (273)
T ss_pred HHHHHHHHHHHHcCCCEEEecC---CcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCC-ccch----HHHHHHHhCC
Confidence 3333334444567999999822 11122 23345554433 5667776776544322 1111 3466788889
Q ss_pred CcEEEEeccccc------------hH---HHHHH-hccCCCcEEEEe-ccCCCCCC-CHhHHHHHHHHHHHcCCCEEEEE
Q 015614 99 ADYVDFELKVAS------------NI---LGKQY-SSHQSGTRFIVS-CNLDCETP-SEEDLGYLVSRMQATGADIIKLV 160 (403)
Q Consensus 99 ~~yvDiEl~~~~------------~~---~~~l~-~~~~~~~kiI~S-~H~f~~tp-~~~~l~~~~~~~~~~gadivKia 160 (403)
++.|.+-....+ +. ..+.. ..+..+.++.++ -+.++.+. +.+.+.++++++.+.|+|.+-++
T Consensus 92 ~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~ 171 (273)
T cd07941 92 TPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLVLC 171 (273)
T ss_pred CCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 999888543321 11 12222 234455666553 23334433 35668999999999999988877
Q ss_pred eec--CCHhHHHHHHHHhccC-C-CCEEEEEcCcc--chhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614 161 FSV--NDITEIARIFQLLSHC-Q-VPIIAYSVGER--GLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (403)
Q Consensus 161 ~~~--~~~~D~~~ll~~~~~~-~-~p~i~~~MG~~--G~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~ 230 (403)
=+. .++.++..+++.+.+. + .|+-.=+=-.. |...-+..-.-|..+.-+++.+ +--.|+.+++++...++
T Consensus 172 DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~GlGeraGn~~~e~~~~~L~ 248 (273)
T cd07941 172 DTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTINGYGERCGNANLCSIIPNLQ 248 (273)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEeccccccccccccHHHHHHHHH
Confidence 444 3577887777775432 2 33321111111 1111122222233333333332 23467777777766554
No 327
>PRK06046 alanine dehydrogenase; Validated
Probab=81.95 E-value=1.4 Score=43.84 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=30.2
Q ss_pred CCeEEEEcchhHHHHHHHHHHH-CCC-eEEEEecCCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFG 402 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~-~g~-~i~v~nR~~~ 402 (403)
-+++.|+|+|+.|++.+.++.. .++ +|+|++|+.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~ 165 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKS 165 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHH
Confidence 4689999999999999999875 467 8999999864
No 328
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=81.69 E-value=35 Score=34.09 Aligned_cols=149 Identities=9% Similarity=0.088 Sum_probs=85.4
Q ss_pred EEeecCCCCCC---CCCCHHHHHHHHHHHHHcCCcEEEE---------eccc-----c-chHHHHHHhccCCCcEEEEec
Q 015614 69 IVYRPKWAGGL---YEGDEHKRLEALHLAEDLGADYVDF---------ELKV-----A-SNILGKQYSSHQSGTRFIVSC 130 (403)
Q Consensus 69 ~T~R~~~eGG~---~~~~~~~~~~ll~~~~~~g~~yvDi---------El~~-----~-~~~~~~l~~~~~~~~kiI~S~ 130 (403)
.|+| +|++ +..+.++..++...+.+.|+++|.+ .+.. + .+.++++... .+++++.+-.
T Consensus 8 ~TLR---DG~q~~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~-~~~~~~~~ll 83 (333)
T TIGR03217 8 VTLR---DGMHAIRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADV-VKRAKVAVLL 83 (333)
T ss_pred CCCC---CCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHh-CCCCEEEEEe
Confidence 3555 5664 4567899999999999999999887 2221 1 1334444433 2455654322
Q ss_pred cCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcCcc-chhh------hhhcCCCC
Q 015614 131 NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGER-GLVS------QLLSPKFN 203 (403)
Q Consensus 131 H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~~-G~~S------Ril~~~~g 203 (403)
. |.... .+-++.+.+.|.|++++++..+..+......+...+....+....|-.. -.+. +.+.. +|
T Consensus 84 ~-----pg~~~-~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~-~G 156 (333)
T TIGR03217 84 L-----PGIGT-VHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMES-YG 156 (333)
T ss_pred c-----cCccC-HHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHh-cC
Confidence 1 11111 2346888889999999999887777667777776666655544433221 1111 22211 23
Q ss_pred CcccccccCCCCCCCCCCHHHHHhhhhhc
Q 015614 204 GALVYGSLKGTPVLGLPTVESLRQTYKVE 232 (403)
Q Consensus 204 s~lty~~~~~~sApGQ~~~~~l~~~~~~~ 232 (403)
....|- . ..-|.++..++.+.+...
T Consensus 157 a~~i~i--~--DT~G~~~P~~v~~~v~~l 181 (333)
T TIGR03217 157 ADCVYI--V--DSAGAMLPDDVRDRVRAL 181 (333)
T ss_pred CCEEEE--c--cCCCCCCHHHHHHHHHHH
Confidence 322211 1 335777777777777643
No 329
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=81.55 E-value=2 Score=43.53 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=29.5
Q ss_pred CCeEEEEcchhHHHHHHHHHHHC-CC-eEEEEecC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDID 400 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~-g~-~i~v~nR~ 400 (403)
...++|||+|-++.+++|.|++. |. +|.|+.|.
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~ 64 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG 64 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 45799999999999999999985 86 89999885
No 330
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=81.45 E-value=1.9 Score=42.04 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=30.8
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
.+.+++|+|+|+.+++++..+..+|++|+++.++.+
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~ 197 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPD 197 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467899999999999998888899998888887653
No 331
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=81.40 E-value=3.5 Score=42.20 Aligned_cols=111 Identities=22% Similarity=0.292 Sum_probs=68.0
Q ss_pred cCCCceEeecCc---ccHHHHHHHhcCCCCceEEe---cccchHHHHcccccCCHHHhhccceeEEEEeccCCeEEEEec
Q 015614 264 VNYNGIYVPMFV---DDLKKFFSTYSSPDFAGFSV---GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNT 337 (403)
Q Consensus 264 ~gl~~~y~~~~~---~~~~~~~~~~~~~~~~G~~V---T~P~K~~v~~~~d~~~~~A~~igavNTi~~~~~~g~l~G~NT 337 (403)
-|+|..=..+++ +.+.++++.+ .+.|.|.|+ -.|-+-.+-..+.+. .|.=++. |+ .+|+-.
T Consensus 114 aGid~~pI~ld~~~~~ei~~~Vkal-~p~FgginLedi~ap~cf~ie~~lr~~---------~~IPvFh--DD-qqGTai 180 (432)
T COG0281 114 AGIDVLPIELDVGTNNEIIEFVKAL-EPTFGGINLEDIDAPRCFAIEERLRYR---------MNIPVFH--DD-QQGTAI 180 (432)
T ss_pred cCCCceeeEeeCCChHHHHHHHHHh-hhcCCCcceeecccchhhHHHHHHhhc---------CCCCccc--cc-ccHHHH
Confidence 367754444554 3566667766 578999975 345554444333221 2333443 21 334211
Q ss_pred c-HHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCC---eEEEEecC
Q 015614 338 D-CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDID 400 (403)
Q Consensus 338 D-~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~---~i~v~nR~ 400 (403)
= -.|++++|+-. +..++..++++.|||-|+-|++..|...|+ +|++++|.
T Consensus 181 v~lA~llnalk~~-------------gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~ 234 (432)
T COG0281 181 VTLAALLNALKLT-------------GKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRK 234 (432)
T ss_pred HHHHHHHHHHHHh-------------CCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence 1 12344444321 346777899999999999999999999997 59999874
No 332
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=81.40 E-value=2.6 Score=43.28 Aligned_cols=38 Identities=32% Similarity=0.470 Sum_probs=34.3
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
..+.||++.|+|-|..|++++..+..+|++|..++|+.
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~ 184 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIED 184 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence 35789999999999999999999999999999999853
No 333
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=81.38 E-value=16 Score=35.81 Aligned_cols=80 Identities=19% Similarity=0.054 Sum_probs=55.8
Q ss_pred EEecccC-CHHHHHHHHHHHHhcCCCEEEEEecCCCCC--CCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHH
Q 015614 14 CAPLMAQ-SVEQVLSNMYQAKAEGADVVEIRLDCINNF--QPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA 90 (403)
Q Consensus 14 cv~l~~~-~~~e~~~~~~~~~~~~~D~vElRlD~l~~~--~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l 90 (403)
.+.|... +.++....++.+...|+|+|++-+|+.... ...+.++.+++..+.|+++-.. .+. +.
T Consensus 119 ~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v---------~s~----~~ 185 (299)
T cd02809 119 WFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGI---------LTP----ED 185 (299)
T ss_pred EEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeec---------CCH----HH
Confidence 4455443 677776667777778999999999987521 1124677888878899998743 122 23
Q ss_pred HHHHHHcCCcEEEEec
Q 015614 91 LHLAEDLGADYVDFEL 106 (403)
Q Consensus 91 l~~~~~~g~~yvDiEl 106 (403)
.+.+.+.|+++|++.-
T Consensus 186 a~~a~~~G~d~I~v~~ 201 (299)
T cd02809 186 ALRAVDAGADGIVVSN 201 (299)
T ss_pred HHHHHHCCCCEEEEcC
Confidence 4667789999999873
No 334
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=81.23 E-value=11 Score=38.30 Aligned_cols=226 Identities=17% Similarity=0.182 Sum_probs=123.8
Q ss_pred ecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEee-----cCCCCCCCCCCHHHHHHH
Q 015614 16 PLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYR-----PKWAGGLYEGDEHKRLEA 90 (403)
Q Consensus 16 ~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R-----~~~eGG~~~~~~~~~~~l 90 (403)
|-...++++-+..++.+.+.|||.| .|+-..-+..+.-..+++.+++|+= |+- .+..+...+.++++.++.
T Consensus 70 S~~~~d~~~E~~K~~~A~~~GADti---MDLStGgdl~~iR~~il~~s~vpvG-TVPiYqa~~~~~~~~~~mt~d~~~~~ 145 (423)
T TIGR00190 70 SADTSDIEEEVEKALIAIKYGADTV---MDLSTGGDLDEIRKAILDAVPVPVG-TVPIYQAAEKVHGAVEDMDEDDMFRA 145 (423)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeE---eeccCCCCHHHHHHHHHHcCCCCcc-CccHHHHHHHhcCChhhCCHHHHHHH
Confidence 3344556666667888899999987 4665543322111233344555542 211 111234456788999999
Q ss_pred HHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEec----------cCCCCCCCHhHHHHHHHHHHHcCCCEEEE-
Q 015614 91 LHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSC----------NLDCETPSEEDLGYLVSRMQATGADIIKL- 159 (403)
Q Consensus 91 l~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~----------H~f~~tp~~~~l~~~~~~~~~~gadivKi- 159 (403)
++.=++-|+||+-|--....+.++.+.. .+..-=|+|. |+-.+.|=.++...+++-++++.. .+=+
T Consensus 146 ie~qa~dGVDfmTiH~Gi~~~~~~~~~~--~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~yDV-tlSLG 222 (423)
T TIGR00190 146 IEKQAKDGVDFMTIHAGVLLEYVERLKR--SGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKEYDV-TLSLG 222 (423)
T ss_pred HHHHHHhCCCEEEEccchhHHHHHHHHh--CCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCe-eeecc
Confidence 9999999999999987776666665542 2344446775 566778866666666666666541 0000
Q ss_pred -EeecC---CHhHHHHHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhhc-cc
Q 015614 160 -VFSVN---DITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE-HI 234 (403)
Q Consensus 160 -a~~~~---~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~~-~~ 234 (403)
...|- +..|-..+.++.. .|++-+-.|=.+ -.++. -.||.+++.++..-.++. .+
T Consensus 223 DglRPG~i~DA~D~aQi~El~~----------lgeL~~rA~e~g---VQvMV-------EGPGHvPl~~I~~nv~lqK~l 282 (423)
T TIGR00190 223 DGLRPGCIADATDRAQISELIT----------LGELVERAREAD---VQCMV-------EGPGHVPLDQIEANVRLQKEL 282 (423)
T ss_pred CCcCCCccccCCcHHHHHHHHH----------HHHHHHHHHHcC---CeEEE-------ECCCCCcHHHHHHHHHHHHHh
Confidence 12222 2334444444411 222222222211 01121 349999999988666543 33
Q ss_pred cccceEEeeeccCCccc------CCHHHHHHHHHhcCCCce
Q 015614 235 NADTKVFGLISKPVGHS------KGPILHNPTFRHVNYNGI 269 (403)
Q Consensus 235 ~~~~~~~~liG~pi~hS------~SP~ihn~~~~~~gl~~~ 269 (403)
... -=||++|-=++-. .+-.|=-+.....|-|..
T Consensus 283 c~~-APfYvLGPLvTDiApGYDHItsAIGgAiAa~~GAdfL 322 (423)
T TIGR00190 283 CDE-APFYVLGPLVTDIAPGYDHITSAIGAAIAGWAGADFL 322 (423)
T ss_pred hCC-CCeeecCCcccccCCCchHHHHHHHHHHHHHcCCCeE
Confidence 322 3467888433332 233344445566676654
No 335
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=81.15 E-value=3.5 Score=37.75 Aligned_cols=111 Identities=12% Similarity=0.158 Sum_probs=70.7
Q ss_pred ceEEeeeccCCcccCCHHHHHHHHHhcC-CCceEeecCcccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHHhh
Q 015614 238 TKVFGLISKPVGHSKGPILHNPTFRHVN-YNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA 316 (403)
Q Consensus 238 ~~~~~liG~pi~hS~SP~ihn~~~~~~g-l~~~y~~~~~~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~ 316 (403)
++++++.|+|=..|.|-.+-+.+.+.+. -.+.+..+++.++.. +.+ .+.. + ..+.+.+..+.
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~--~~~-----~~~~----~------~~~~~~~~~~~ 63 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAP--EDL-----LYAR----F------DSPALKTFTEQ 63 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCCh--HHH-----Hhcc----C------CCHHHHHHHHH
Confidence 4688999999999999998888776543 234555555433221 111 1100 0 01244566688
Q ss_pred ccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHH
Q 015614 317 IAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGR 381 (403)
Q Consensus 317 igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaar 381 (403)
+..+..|++-.+. ||-.+.|.++.+-+.+. ...+.+|.++++++||...
T Consensus 64 i~~AD~iIi~tP~-----Y~~s~pg~LKn~iD~l~-----------~~~l~~K~v~iiat~G~~~ 112 (191)
T PRK10569 64 LAQADGLIVATPV-----YKASFSGALKTLLDLLP-----------ERALEHKVVLPLATGGSVA 112 (191)
T ss_pred HHHCCEEEEECCc-----cCCCCCHHHHHHHHhCC-----------hhhhCCCEEEEEEecCCch
Confidence 8888998876212 67778888887765542 1246789999999887743
No 336
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=81.13 E-value=2.2 Score=44.47 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=31.1
Q ss_pred CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.+++||||+|-|+-.++-.|++.|++++++.+.+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep 157 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEP 157 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 4789999999999999999999999999988764
No 337
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=81.08 E-value=51 Score=31.22 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=51.6
Q ss_pred EEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---------------------chHHHHHHhcCCCcEEEEee
Q 015614 14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---------------------GKDLEIILTKKPLPVLIVYR 72 (403)
Q Consensus 14 cv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---------------------~~~l~~l~~~~~~PiI~T~R 72 (403)
-++.-.|+.+.....++...+.|+|++|+-+-+-.+.-+ .+.++.+|+..++|+++-..
T Consensus 5 y~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y 84 (242)
T cd04724 5 YITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGY 84 (242)
T ss_pred EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 457778899888888888888899999997633222211 12344555556789665333
Q ss_pred cCCCCCCCCCCH-HHH--HHHHHHHHHcCCcEEEE
Q 015614 73 PKWAGGLYEGDE-HKR--LEALHLAEDLGADYVDF 104 (403)
Q Consensus 73 ~~~eGG~~~~~~-~~~--~~ll~~~~~~g~~yvDi 104 (403)
- +. -.+ -++++.+.+.|++.+=+
T Consensus 85 ~---------n~~~~~G~~~fi~~~~~aG~~giii 110 (242)
T cd04724 85 Y---------NPILQYGLERFLRDAKEAGVDGLII 110 (242)
T ss_pred c---------CHHHHhCHHHHHHHHHHCCCcEEEE
Confidence 1 11 111 34567778888887665
No 338
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=80.77 E-value=2 Score=46.81 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=28.3
Q ss_pred CeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
..|||||+|+|+.+++..+++.|++|.|+...
T Consensus 51 ~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~ 82 (635)
T PLN00128 51 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 82 (635)
T ss_pred cCEEEECccHHHHHHHHHHHhcCCcEEEEEcC
Confidence 35999999999999999999999998888754
No 339
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=80.76 E-value=1.9 Score=40.07 Aligned_cols=35 Identities=40% Similarity=0.512 Sum_probs=30.1
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.+++++|.|+|+.+++++..+...|.+|+++.++.
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~ 168 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD 168 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 57899999999999999988888999888887763
No 340
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=80.70 E-value=1.9 Score=41.13 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=30.3
Q ss_pred CCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~ 400 (403)
..+++|+|+||-+-.++..|...|+ ++.|++.+
T Consensus 30 ~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d 63 (254)
T COG0476 30 DSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFD 63 (254)
T ss_pred hCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCC
Confidence 4579999999999999999999999 99999875
No 341
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=80.69 E-value=2.8 Score=41.93 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=29.3
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.+++++|.|+|+.+.+++..++.+|++|+++.++.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~ 217 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS 217 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 47899999999999999998899999776665543
No 342
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=80.65 E-value=5.7 Score=37.87 Aligned_cols=49 Identities=33% Similarity=0.407 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEE
Q 015614 339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV 395 (403)
Q Consensus 339 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~ 395 (403)
+.|+..+++..+...+ ...+++++++|-|.|.+++.++..|.++|++|.
T Consensus 11 g~GV~~~~~~~~~~~~--------~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv 59 (244)
T PF00208_consen 11 GYGVAYAIEAALEHLG--------GDSLEGKRVAIQGFGNVGSHAARFLAELGAKVV 59 (244)
T ss_dssp HHHHHHHHHHHHHHTT--------CHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHcC--------CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEE
Confidence 5688888887766322 134789999999999999999999999998653
No 343
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=80.65 E-value=23 Score=36.32 Aligned_cols=225 Identities=16% Similarity=0.173 Sum_probs=125.0
Q ss_pred ecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEe-------ec-CCCCCCCCCCHHHH
Q 015614 16 PLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVY-------RP-KWAGGLYEGDEHKR 87 (403)
Q Consensus 16 ~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~-------R~-~~eGG~~~~~~~~~ 87 (403)
|-...++++-+..++.+.+.|||.| .|+-..-+..+.-..+++.+++|+= |+ +. +..|+..+.++++.
T Consensus 70 S~~~~d~~~E~~K~~~A~~~GADti---MDLStggdl~~iR~~il~~s~vpvG-TVPiYqa~~~~~~k~~~~~~mt~d~~ 145 (431)
T PRK13352 70 SSDISDIEEELEKAKVAVKYGADTI---MDLSTGGDLDEIRRAIIEASPVPVG-TVPIYQAAVEAARKYGSVVDMTEDDL 145 (431)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeE---eeccCCCCHHHHHHHHHHcCCCCCc-ChhHHHHHHHHHhcCCChhhCCHHHH
Confidence 4445566666777888899999987 4665543322212233444555542 21 11 13455567889999
Q ss_pred HHHHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEec----------cCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015614 88 LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSC----------NLDCETPSEEDLGYLVSRMQATGADII 157 (403)
Q Consensus 88 ~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~----------H~f~~tp~~~~l~~~~~~~~~~gadiv 157 (403)
++.++.=++-|+||+-|--....+.++.+.. .+..-=|+|. |+..+.|=.++...+++-++++.. .
T Consensus 146 ~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~--~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDV--t 221 (431)
T PRK13352 146 FDVIEKQAKDGVDFMTIHCGVTRETLERLKK--SGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDV--T 221 (431)
T ss_pred HHHHHHHHHhCCCEEEEccchhHHHHHHHHh--cCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCe--e
Confidence 9999999999999999987776666655542 1333446664 666888866666666666666541 1
Q ss_pred E-E--EeecC---CHhHHHHHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhhh
Q 015614 158 K-L--VFSVN---DITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV 231 (403)
Q Consensus 158 K-i--a~~~~---~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~~ 231 (403)
= + ...|- +..|-..+.++.. .|++-+-.|=.+ -.++ -+ .||.+++.++..-.++
T Consensus 222 lSLGDglRPG~i~Da~D~aQi~El~~----------lgeL~~RA~e~g---VQvM-----VE--GPGHvPl~~I~~nv~l 281 (431)
T PRK13352 222 LSLGDGLRPGCIADATDRAQIQELIT----------LGELVKRAREAG---VQVM-----VE--GPGHVPLDQIEANVKL 281 (431)
T ss_pred eeccCCcCCCccccCCcHHHHHHHHH----------HHHHHHHHHHcC---CeEE-----EE--CCCCCCHHHHHHHHHH
Confidence 0 0 12222 2334444444311 122222222111 0112 23 3999999998866654
Q ss_pred c-cccccceEEeeeccCCccc------CCHHHHHHHHHhcCCCce
Q 015614 232 E-HINADTKVFGLISKPVGHS------KGPILHNPTFRHVNYNGI 269 (403)
Q Consensus 232 ~-~~~~~~~~~~liG~pi~hS------~SP~ihn~~~~~~gl~~~ 269 (403)
. .+... -=|||+|-=+.-. .+-.|=-+.....|-|..
T Consensus 282 ~K~lc~~-APfYvLGPLvTDiApGYDHIt~AIGgAiAa~~GAdfL 325 (431)
T PRK13352 282 QKRLCHG-APFYVLGPLVTDIAPGYDHITSAIGGAIAAAAGADFL 325 (431)
T ss_pred HHHhhCC-CCceecCccccccCCCchHHHHHHHHHHHHhcCCCeE
Confidence 3 33322 2466778433332 233444555666676654
No 344
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=80.35 E-value=69 Score=32.31 Aligned_cols=197 Identities=15% Similarity=0.202 Sum_probs=107.4
Q ss_pred EecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHHH
Q 015614 15 APLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHL 93 (403)
Q Consensus 15 v~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~ 93 (403)
++++..+..++.. ...+.|+|.||+-.=...+ ++.+.+..+++.. +..+..-.|.. .+-++.
T Consensus 18 ~~~s~~~k~~ia~---~L~~~Gv~~IEvG~p~~~~-~~~e~i~~i~~~~~~~~i~~~~r~~-------------~~di~~ 80 (365)
T TIGR02660 18 VAFTAAEKLAIAR---ALDEAGVDELEVGIPAMGE-EERAVIRAIVALGLPARLMAWCRAR-------------DADIEA 80 (365)
T ss_pred CCCCHHHHHHHHH---HHHHcCCCEEEEeCCCCCH-HHHHHHHHHHHcCCCcEEEEEcCCC-------------HHHHHH
Confidence 3344444444444 4445799999995322221 1124556665443 22333333321 223567
Q ss_pred HHHcCCcEEEEeccccch------------HHH---HHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015614 94 AEDLGADYVDFELKVASN------------ILG---KQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII 157 (403)
Q Consensus 94 ~~~~g~~yvDiEl~~~~~------------~~~---~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadiv 157 (403)
+.+.|++.|-+-....+. .++ +.+ ..+..+.++-.++=+...+ +.+.+.++++++.+.|+|.+
T Consensus 81 a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~-~~~~l~~~~~~~~~~Ga~~i 159 (365)
T TIGR02660 81 AARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRA-DPDFLVELAEVAAEAGADRF 159 (365)
T ss_pred HHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCC-CHHHHHHHHHHHHHcCcCEE
Confidence 788899988887665431 111 122 2344566776666555444 36789999999999999998
Q ss_pred EEEeecC--CHhHHHHHHHHhcc-CCCCEEEEEcCccc--hhhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhh
Q 015614 158 KLVFSVN--DITEIARIFQLLSH-CQVPIIAYSVGERG--LVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTY 229 (403)
Q Consensus 158 Kia~~~~--~~~D~~~ll~~~~~-~~~p~i~~~MG~~G--~~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~ 229 (403)
-++=+.- ++.++.++.+.+.+ .+.|+-.=+=-..| ...=+..-..|....-+++.+ +-..|+.+++++...+
T Consensus 160 ~l~DT~G~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGeraGN~~lE~lv~~L 237 (365)
T TIGR02660 160 RFADTVGILDPFSTYELVRALRQAVDLPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGERAGNAALEEVAMAL 237 (365)
T ss_pred EEcccCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeeccccccccCCHHHHHHHH
Confidence 8876553 57788777776543 24443221212222 122222223344333344432 2457888888877655
No 345
>PRK04148 hypothetical protein; Provisional
Probab=80.30 E-value=2 Score=37.17 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=29.5
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
++++++++|.| .+.+++-.|+++|.+|+.++.++
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 46789999999 88888989999999999888764
No 346
>PLN02661 Putative thiazole synthesis
Probab=80.03 E-value=2.5 Score=42.56 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=29.3
Q ss_pred CeEEEEcchhHHHHHHHHHHHC-CCeEEEEecCC
Q 015614 369 RMFVLAGAGGAGRALAFGAKSR-GARVVIFDIDF 401 (403)
Q Consensus 369 ~~~lilGaGGaarai~~al~~~-g~~i~v~nR~~ 401 (403)
..++|+|+|.++-++++.|++. |.+|.|+.|+.
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 4799999999999999999976 77999998864
No 347
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=80.01 E-value=12 Score=37.30 Aligned_cols=78 Identities=19% Similarity=0.199 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCCEEEEEecC-------CCCC-C---C-------------chHHHHHHhcCCCcEEEEeecC-C---CC
Q 015614 26 LSNMYQAKAEGADVVEIRLDC-------INNF-Q---P-------------GKDLEIILTKKPLPVLIVYRPK-W---AG 77 (403)
Q Consensus 26 ~~~~~~~~~~~~D~vElRlD~-------l~~~-~---~-------------~~~l~~l~~~~~~PiI~T~R~~-~---eG 77 (403)
..-++.+.+.|.|.|||-.-+ |.+. + + .+.++.+|+...-.+.+.+|-. . ++
T Consensus 152 ~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~ 231 (338)
T cd04733 152 AHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRG 231 (338)
T ss_pred HHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCC
Confidence 333455577899999998764 2221 1 1 1456667766543344455532 1 23
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015614 78 GLYEGDEHKRLEALHLAEDLGADYVDFEL 106 (403)
Q Consensus 78 G~~~~~~~~~~~ll~~~~~~g~~yvDiEl 106 (403)
|. +.++-.++.+.+.+.|++||.|-.
T Consensus 232 g~---~~eea~~ia~~Le~~Gvd~iev~~ 257 (338)
T cd04733 232 GF---TEEDALEVVEALEEAGVDLVELSG 257 (338)
T ss_pred CC---CHHHHHHHHHHHHHcCCCEEEecC
Confidence 42 556778888888899999987643
No 348
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=80.00 E-value=3.1 Score=41.36 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHH-HCCCeEEEEecC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAK-SRGARVVIFDID 400 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~-~~g~~i~v~nR~ 400 (403)
.+.||++.|+|-|..||+++.-|. ..|++|..++|.
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~ 178 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARR 178 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCC
Confidence 467999999999999999999887 789999888875
No 349
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=79.88 E-value=3.1 Score=41.47 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=34.6
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
..+.||++-|+|-|..|++++.-++-.|++|..++|++
T Consensus 142 ~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~ 179 (324)
T COG1052 142 FDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSP 179 (324)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCC
Confidence 45789999999999999999999998888999999875
No 350
>PRK12831 putative oxidoreductase; Provisional
Probab=79.87 E-value=2.5 Score=44.05 Aligned_cols=35 Identities=26% Similarity=0.239 Sum_probs=31.6
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
..+++++|+|+|-+|--++..|.++|++|+++.|.
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~ 313 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRR 313 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence 35799999999999999999999999999998874
No 351
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=79.86 E-value=1.5 Score=40.83 Aligned_cols=111 Identities=15% Similarity=0.192 Sum_probs=62.8
Q ss_pred EEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccc---------cchHHHHHH----hccCCCcEEEEeccCC
Q 015614 67 VLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKV---------ASNILGKQY----SSHQSGTRFIVSCNLD 133 (403)
Q Consensus 67 iI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~---------~~~~~~~l~----~~~~~~~kiI~S~H~f 133 (403)
+.+|-|+-..||.+.. +++..+-....++.|++||||=... .++..+++. ........+.+|.=
T Consensus 2 lNvt~dSf~~g~~~~~-~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSID-- 78 (210)
T PF00809_consen 2 LNVTPDSFSDGGRKFS-EDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSID-- 78 (210)
T ss_dssp EEESCCTTTTTTCHHH-HHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEE--
T ss_pred EEecCCCCcccCcccC-HHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEE--
Confidence 3467777788887633 3334444667788999999996443 112222222 22111345777753
Q ss_pred CCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcC
Q 015614 134 CETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVG 189 (403)
Q Consensus 134 ~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG 189 (403)
|+..+.+.+-+ +.|++++==. .+.++...++.+..+.+.|+|+|.|.
T Consensus 79 --T~~~~v~~~aL----~~g~~~ind~---~~~~~~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 79 --TFNPEVAEAAL----KAGADIINDI---SGFEDDPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp --ESSHHHHHHHH----HHTSSEEEET---TTTSSSTTHHHHHHHHTSEEEEESES
T ss_pred --CCCHHHHHHHH----HcCcceEEec---ccccccchhhhhhhcCCCEEEEEecc
Confidence 44444444433 3488764333 33333455566666677899999998
No 352
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=79.85 E-value=3.2 Score=39.87 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=29.5
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCC-----------eEEEEecC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGA-----------RVVIFDID 400 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~-----------~i~v~nR~ 400 (403)
.+++..+++++|||-++-+++.-|.+.++ +|++++|.
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~ 68 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRK 68 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCC
Confidence 45667899999999999999988766543 58888874
No 353
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=79.77 E-value=2 Score=43.02 Aligned_cols=36 Identities=31% Similarity=0.527 Sum_probs=30.8
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG 402 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~ 402 (403)
.+.+++|.|+|+.+.+++..++.+|+ +|+.+.++.+
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~ 221 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPA 221 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence 47899999999999999988889999 7888877643
No 354
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=79.77 E-value=1.8 Score=47.77 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=31.4
Q ss_pred CeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
+++.|||||-+|+.|++.++..|++|++++++++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 6899999999999999999999999999998753
No 355
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=79.73 E-value=51 Score=33.40 Aligned_cols=104 Identities=14% Similarity=0.083 Sum_probs=67.6
Q ss_pred hcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEE-EEeccccc------hHHH---HHH-h-ccCCCcEEEE
Q 015614 61 TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV-DFELKVAS------NILG---KQY-S-SHQSGTRFIV 128 (403)
Q Consensus 61 ~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yv-DiEl~~~~------~~~~---~l~-~-~~~~~~kiI~ 128 (403)
...+.|++-|+=.+ . |. +.++.-+++++.+.-|+|.| |-|.-..+ +-.+ +.+ . ....+.+.+.
T Consensus 122 gv~~rPl~~tiiKP-~-GL---~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y 196 (364)
T cd08210 122 GIPERPLLCSALKP-Q-GL---SAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLY 196 (364)
T ss_pred CCCCCceEEEEecc-c-cC---CHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceE
Confidence 34588999998644 4 65 67888999999999999998 76654332 1111 111 1 1122334444
Q ss_pred eccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHH
Q 015614 129 SCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARI 172 (403)
Q Consensus 129 S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l 172 (403)
...- |-..+|+.+..+.+++.|++.+-+.....-.+-+..+
T Consensus 197 ~~Ni---ta~~~em~~ra~~a~~~Ga~~vMv~~~~~G~~~~~~l 237 (364)
T cd08210 197 APNV---TGPPTQLLERARFAKEAGAGGVLIAPGLTGLDTFREL 237 (364)
T ss_pred EEec---CCCHHHHHHHHHHHHHcCCCEEEeecccchHHHHHHH
Confidence 4332 2224599999999999999999998887766633333
No 356
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=79.69 E-value=2.9 Score=44.40 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
.+.||++.|+|.|..|++++..|...|++|+.++|+
T Consensus 137 ~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~ 172 (526)
T PRK13581 137 ELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPY 172 (526)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCC
Confidence 467899999999999999999999999999999985
No 357
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=79.69 E-value=3.8 Score=37.76 Aligned_cols=57 Identities=26% Similarity=0.269 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCCeEEEEe
Q 015614 338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFD 398 (403)
Q Consensus 338 D~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~~i~v~n 398 (403)
--.|++.-|+..- ..++.-+.+.+++||+++|+|-+.. +|.++.-|.+.|+.|++++
T Consensus 36 Tp~avi~lL~~~~----i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~ 93 (197)
T cd01079 36 TPLAIVKILEFLG----IYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVD 93 (197)
T ss_pred CHHHHHHHHHHhC----CcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEe
Confidence 3467777776531 0000001124689999999997776 9999999999999999984
No 358
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=79.63 E-value=2.3 Score=46.35 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=27.7
Q ss_pred CeEEEEcchhHHHHHHHHHHHCCCeEEEEec
Q 015614 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR 399 (403)
..|+|+|+|+||.+++..+++.|++|.|+..
T Consensus 36 ~DVlVVG~G~AGl~AAi~Aae~G~~VilieK 66 (640)
T PRK07573 36 FDVIVVGTGLAGASAAATLGELGYNVKVFCY 66 (640)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEec
Confidence 4699999999999999999999999888853
No 359
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=79.62 E-value=3.1 Score=44.20 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=33.7
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
..+.||++.|+|-|..|++++..|...|++|+.++|.
T Consensus 134 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~ 170 (525)
T TIGR01327 134 TELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPY 170 (525)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCC
Confidence 3467899999999999999999999999999999984
No 360
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=79.47 E-value=2.8 Score=43.44 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=31.6
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
..+++++|+|+|-+|--++..|.++|++|+++.|.
T Consensus 270 ~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~ 304 (449)
T TIGR01316 270 YAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRR 304 (449)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeec
Confidence 35789999999999999999999999999998875
No 361
>PLN02306 hydroxypyruvate reductase
Probab=79.44 E-value=3.3 Score=42.23 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHH-HCCCeEEEEecCC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDF 401 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~-~~g~~i~v~nR~~ 401 (403)
.+.|+++.|+|.|..|++++.-|. .+|++|..++|+.
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~ 199 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 467999999999999999999875 7899999998764
No 362
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=79.42 E-value=2.3 Score=42.34 Aligned_cols=36 Identities=36% Similarity=0.568 Sum_probs=30.7
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG 402 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~ 402 (403)
.+++++|.|+|+.+.+++..++..|+ +|+.+.++.+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~ 212 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDR 212 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence 47899999999999999998888999 5888877643
No 363
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=79.39 E-value=33 Score=33.77 Aligned_cols=132 Identities=11% Similarity=0.093 Sum_probs=82.4
Q ss_pred eEEeeeccCCcccCCHHHHHHHHHhcCCCceEeecCc------ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCH
Q 015614 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV------DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP 312 (403)
Q Consensus 239 ~~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~------~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~ 312 (403)
...-+|=.|-. |+-.=+..+.+.||....|..... +.+.+....+... +.++-+=.|-...+..+.
T Consensus 45 ~v~~lF~e~ST--RTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~-~D~iv~R~~~~~~~~~~a----- 116 (304)
T PRK00779 45 TLAMIFEKPST--RTRVSFEVGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRY-VDAIMIRTFEHETLEELA----- 116 (304)
T ss_pred EEEEEecCCCc--hHHHHHHHHHHHcCCcEEEECcccccCCCCcCHHHHHHHHHHh-CCEEEEcCCChhHHHHHH-----
Confidence 34445556644 555556889999999887765322 4677777766443 566665555444433332
Q ss_pred HHhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcc-hhHHHHHHHHHHHCC
Q 015614 313 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-GGAGRALAFGAKSRG 391 (403)
Q Consensus 313 ~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGa-GGaarai~~al~~~g 391 (403)
+..+. -|++- .+ -..+=|=...=+.+|.+.++ .++|.+++++|. +.++++.+.+|..+|
T Consensus 117 --~~~~v--PVINa--g~-~~~HPtQaL~Dl~Ti~e~~g-------------~l~gl~i~~vGd~~~v~~Sl~~~l~~~g 176 (304)
T PRK00779 117 --EYSTV--PVING--LT-DLSHPCQILADLLTIYEHRG-------------SLKGLKVAWVGDGNNVANSLLLAAALLG 176 (304)
T ss_pred --HhCCC--CEEeC--CC-CCCChHHHHHHHHHHHHHhC-------------CcCCcEEEEEeCCCccHHHHHHHHHHcC
Confidence 22221 23333 22 23555555554555554432 367899999997 788999999999999
Q ss_pred CeEEEEe
Q 015614 392 ARVVIFD 398 (403)
Q Consensus 392 ~~i~v~n 398 (403)
++|+++.
T Consensus 177 ~~v~~~~ 183 (304)
T PRK00779 177 FDLRVAT 183 (304)
T ss_pred CEEEEEC
Confidence 9988875
No 364
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=79.34 E-value=2.3 Score=42.56 Aligned_cols=36 Identities=36% Similarity=0.555 Sum_probs=31.2
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG 402 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~ 402 (403)
.+.+++|+|+|+.+.+++..++.+|+ +|+.+.++.+
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~ 222 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPD 222 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence 47899999999999999998999999 7888877654
No 365
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=79.29 E-value=2.1 Score=42.93 Aligned_cols=36 Identities=33% Similarity=0.586 Sum_probs=30.7
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG 402 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~ 402 (403)
.+++++|.|+|+.+.+++..++..|+ +|+++.++.+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~ 227 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNED 227 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHH
Confidence 47899999999999999888888999 7888877653
No 366
>PLN02697 lycopene epsilon cyclase
Probab=79.24 E-value=2.4 Score=45.11 Aligned_cols=32 Identities=34% Similarity=0.378 Sum_probs=28.9
Q ss_pred CeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
..++|+|+|.+|.+++.+|++.|.+|.++.+.
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 47999999999999999999999999888753
No 367
>PLN02572 UDP-sulfoquinovose synthase
Probab=79.22 E-value=3.2 Score=43.00 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=30.7
Q ss_pred CCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEec
Q 015614 365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 365 ~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR 399 (403)
.+++++++|.|+ |+.|+.++..|.+.|++|++++|
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~ 79 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDN 79 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEec
Confidence 457899999995 99999999999999999988764
No 368
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=79.08 E-value=3.4 Score=41.10 Aligned_cols=36 Identities=36% Similarity=0.523 Sum_probs=33.6
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEec
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR 399 (403)
..+.||++-|+|.|-.|+.++.-|+.+|++|..+++
T Consensus 138 ~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~ 173 (324)
T COG0111 138 TELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDP 173 (324)
T ss_pred ccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECC
Confidence 456799999999999999999999999999999998
No 369
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=79.00 E-value=60 Score=30.81 Aligned_cols=123 Identities=18% Similarity=0.156 Sum_probs=76.4
Q ss_pred HHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecccc---------------chHHHHHH--
Q 015614 55 DLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVA---------------SNILGKQY-- 117 (403)
Q Consensus 55 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~---------------~~~~~~l~-- 117 (403)
.+..+.+...+|+|.-... |. ++.+...+..+..++.|+..|=||-... ++..+.+.
T Consensus 60 ~~~~I~~~~~~Pv~~D~~~----G~--g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa 133 (243)
T cd00377 60 AVRRIARAVDLPVIADADT----GY--GNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAA 133 (243)
T ss_pred HHHHHHhhccCCEEEEcCC----CC--CCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHH
Confidence 3445556679999987654 32 2445666778899999999999975542 22233333
Q ss_pred -hccCC--CcEEEEeccC-CCCC-CCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEc
Q 015614 118 -SSHQS--GTRFIVSCNL-DCET-PSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSV 188 (403)
Q Consensus 118 -~~~~~--~~kiI~S~H~-f~~t-p~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~M 188 (403)
..... ..-||.- -| +... ...++..++.+...+.|||.+=+- .+.+.++..++ ....+.|+..+.+
T Consensus 134 ~~a~~~~~~~~IiAR-TDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~-~~~~~~~~~~~---~~~~~~Pl~~~~~ 204 (243)
T cd00377 134 RDARDDLPDFVIIAR-TDALLAGEEGLDEAIERAKAYAEAGADGIFVE-GLKDPEEIRAF---AEAPDVPLNVNMT 204 (243)
T ss_pred HHHHhccCCeEEEEE-cCchhccCCCHHHHHHHHHHHHHcCCCEEEeC-CCCCHHHHHHH---HhcCCCCEEEEec
Confidence 22222 4444443 33 3222 467889999999999999998764 34455555444 4446678876643
No 370
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=79.00 E-value=3.2 Score=42.09 Aligned_cols=33 Identities=33% Similarity=0.544 Sum_probs=30.3
Q ss_pred CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
+++++|+|+|-+|--++..|.+.|.+|+|+.|.
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~ 176 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELA 176 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 578999999999999999999999999998874
No 371
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=78.99 E-value=2.9 Score=41.34 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=28.6
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEec
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDI 399 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR 399 (403)
...++|||||||-|--+..-|+-.|. ++.|++-
T Consensus 39 ~~~kiLviGAGGLGCElLKnLal~gF~~~~viDm 72 (422)
T KOG2015|consen 39 QDCKILVIGAGGLGCELLKNLALSGFRQLHVIDM 72 (422)
T ss_pred hhCcEEEEccCcccHHHHHhHHhhccceeEEEee
Confidence 35789999999999999999999998 7887764
No 372
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=78.91 E-value=2.4 Score=42.33 Aligned_cols=36 Identities=36% Similarity=0.577 Sum_probs=31.2
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG 402 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~ 402 (403)
.+.+++|.|+|+.+.+++..++.+|+ +|+++.|+.+
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~ 223 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPS 223 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence 47899999999999999988889999 7888887654
No 373
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=78.91 E-value=63 Score=30.98 Aligned_cols=163 Identities=14% Similarity=0.155 Sum_probs=87.1
Q ss_pred EEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---------------------chHHHHHHhc-CCCcEE-EE
Q 015614 14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---------------------GKDLEIILTK-KPLPVL-IV 70 (403)
Q Consensus 14 cv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---------------------~~~l~~l~~~-~~~PiI-~T 70 (403)
-++.-.|+.+.....+....+.|||+|||-+-+-++.-+ .+.++.+|+. .++|++ .|
T Consensus 15 y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~ 94 (256)
T TIGR00262 15 FVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLT 94 (256)
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 456678899888887887778999999999987654422 1335556655 678944 55
Q ss_pred eecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHH
Q 015614 71 YRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRM 149 (403)
Q Consensus 71 ~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~ 149 (403)
+... .+.. -..++++.+.+.|++.|=+--.-.+ ...++. ..++.+.+.|.-... .| +.+.+..+.+..
T Consensus 95 Y~Np----i~~~---G~e~f~~~~~~aGvdgviipDlp~e-e~~~~~~~~~~~gl~~i~lv~P--~T-~~eri~~i~~~~ 163 (256)
T TIGR00262 95 YYNL----IFRK---GVEEFYAKCKEVGVDGVLVADLPLE-ESGDLVEAAKKHGVKPIFLVAP--NA-DDERLKQIAEKS 163 (256)
T ss_pred eccH----Hhhh---hHHHHHHHHHHcCCCEEEECCCChH-HHHHHHHHHHHCCCcEEEEECC--CC-CHHHHHHHHHhC
Confidence 4431 1111 1234577888889887655321112 222222 223456666655431 12 234455554432
Q ss_pred HHcCCCEEEEEeecCC------HhHHHHHHHHhcc-CCCCEEEEEcCcc
Q 015614 150 QATGADIIKLVFSVND------ITEIARIFQLLSH-CQVPIIAYSVGER 191 (403)
Q Consensus 150 ~~~gadivKia~~~~~------~~D~~~ll~~~~~-~~~p~i~~~MG~~ 191 (403)
.| -|+=+.++..+ ..++...++.+++ .+.|+ .++=|-.
T Consensus 164 --~g-fiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi-~vgfGI~ 208 (256)
T TIGR00262 164 --QG-FVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPV-LVGFGIS 208 (256)
T ss_pred --CC-CEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCE-EEeCCCC
Confidence 12 35544433222 2344555554443 35674 3455554
No 374
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=78.79 E-value=2.4 Score=43.68 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=33.0
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
...++++|+|.|..|+.++-.|.+.|.+++++.++++
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~ 265 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE 265 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 3468999999999999999999999999999988754
No 375
>PRK02227 hypothetical protein; Provisional
Probab=78.71 E-value=24 Score=33.57 Aligned_cols=98 Identities=13% Similarity=0.061 Sum_probs=58.2
Q ss_pred HHHHcCCcEEEEeccc-------cchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCC
Q 015614 93 LAEDLGADYVDFELKV-------ASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVND 165 (403)
Q Consensus 93 ~~~~~g~~yvDiEl~~-------~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~ 165 (403)
.+++.|+|.||+-=-. +...+++++..-+++..+=...-|+.. ....+......+...|+|+||+-.+..+
T Consensus 15 ~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~--~p~~~~~aa~~~a~~GvDyVKvGl~~~~ 92 (238)
T PRK02227 15 EALAGGADIIDVKNPKEGSLGANFPWVIREIVAAVPGRKPVSATIGDVPY--KPGTISLAALGAAATGADYVKVGLYGGK 92 (238)
T ss_pred HHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeccCCCC--CchHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 4567889999984211 234456666443333222222233322 3356777788888899999999998654
Q ss_pred -HhHHHHHHHHh----cc--CCCCEEEEEcCccc
Q 015614 166 -ITEIARIFQLL----SH--CQVPIIAYSVGERG 192 (403)
Q Consensus 166 -~~D~~~ll~~~----~~--~~~p~i~~~MG~~G 192 (403)
.++....++-. .. .+..+++......+
T Consensus 93 ~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~ 126 (238)
T PRK02227 93 TAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAH 126 (238)
T ss_pred cHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccc
Confidence 44555544332 22 25678887777765
No 376
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=78.66 E-value=66 Score=31.13 Aligned_cols=175 Identities=14% Similarity=0.194 Sum_probs=98.4
Q ss_pred CCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---------------------chHHHHHHhc-CCCc
Q 015614 9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---------------------GKDLEIILTK-KPLP 66 (403)
Q Consensus 9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---------------------~~~l~~l~~~-~~~P 66 (403)
+-....++.-.|+.+..++.++...+.|+|++||-+-+-++.-+ .+.++.+|+. .++|
T Consensus 17 ~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~P 96 (265)
T COG0159 17 GALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVP 96 (265)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCC
Confidence 34455677788899999998888889999999999987665421 1344555533 5789
Q ss_pred EEEEee-cCCCCCCCCCCHHHHHHHHHHHHHcCCcEE---EEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCH-hH
Q 015614 67 VLIVYR-PKWAGGLYEGDEHKRLEALHLAEDLGADYV---DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSE-ED 141 (403)
Q Consensus 67 iI~T~R-~~~eGG~~~~~~~~~~~ll~~~~~~g~~yv---DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~-~~ 141 (403)
+++-.. .. .+.. --.++++.+.+.|++-+ |+-.+..+++.+.. .+.+...|. --+|++ ++
T Consensus 97 ivlm~Y~Np----i~~~---Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~---~~~gi~~I~-----lvaPtt~~~ 161 (265)
T COG0159 97 IVLMTYYNP----IFNY---GIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAA---EKHGIDPIF-----LVAPTTPDE 161 (265)
T ss_pred EEEEEeccH----HHHh---hHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHH---HHcCCcEEE-----EeCCCCCHH
Confidence 765443 22 0111 11236778889998754 43333333333222 234444442 234533 23
Q ss_pred HHHHHHHHHHcCCCEEEEEeecCCH------hHHHHHHHHhcc-CCCCE-EEEEcCccchhhhhhcC
Q 015614 142 LGYLVSRMQATGADIIKLVFSVNDI------TEIARIFQLLSH-CQVPI-IAYSVGERGLVSQLLSP 200 (403)
Q Consensus 142 l~~~~~~~~~~gadivKia~~~~~~------~D~~~ll~~~~~-~~~p~-i~~~MG~~G~~SRil~~ 200 (403)
..+.+.+..+ | -++=+.++.-|- .++.++++-.++ .+.|+ +.|+.-......++..-
T Consensus 162 rl~~i~~~a~-G-FiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~ 226 (265)
T COG0159 162 RLKKIAEAAS-G-FIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA 226 (265)
T ss_pred HHHHHHHhCC-C-cEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh
Confidence 3333333321 3 566666655442 234555555444 36664 46666666777777644
No 377
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=78.62 E-value=8.8 Score=42.75 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCCEEEEEecC-------CCCC----CC-------------chHHHHHHhcCCCcEEEEeecCC----CC
Q 015614 26 LSNMYQAKAEGADVVEIRLDC-------INNF----QP-------------GKDLEIILTKKPLPVLIVYRPKW----AG 77 (403)
Q Consensus 26 ~~~~~~~~~~~~D~vElRlD~-------l~~~----~~-------------~~~l~~l~~~~~~PiI~T~R~~~----eG 77 (403)
..-++.+.+.|.|.|||-.-. |.+. .+ .+.++.+|+...-.+.+++|-.. +|
T Consensus 554 ~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~ 633 (765)
T PRK08255 554 VAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEG 633 (765)
T ss_pred HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCC
Confidence 333445567899999997652 1111 00 14455566554333444455332 23
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015614 78 GLYEGDEHKRLEALHLAEDLGADYVDFEL 106 (403)
Q Consensus 78 G~~~~~~~~~~~ll~~~~~~g~~yvDiEl 106 (403)
| .+.++.+++.+.+.+.|+|||||-.
T Consensus 634 g---~~~~~~~~~~~~l~~~g~d~i~vs~ 659 (765)
T PRK08255 634 G---NTPDDAVEIARAFKAAGADLIDVSS 659 (765)
T ss_pred C---CCHHHHHHHHHHHHhcCCcEEEeCC
Confidence 3 2557778888888889999999853
No 378
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=78.56 E-value=2.3 Score=41.93 Aligned_cols=36 Identities=31% Similarity=0.416 Sum_probs=30.2
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCe-EEEEecCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFG 402 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~-i~v~nR~~~ 402 (403)
.+++++|.|+|+.+.+++..++.+|++ |+++.++.+
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~ 196 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSE 196 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH
Confidence 478999999999999999988899994 777776543
No 379
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=78.34 E-value=2.1 Score=47.19 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=32.1
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
.-+++.|||||-+|+.|++.++..|.+|++++++++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 346899999999999999999999999999998753
No 380
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=78.34 E-value=4 Score=39.25 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=27.2
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHC----CC-------eEEEEecC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSR----GA-------RVVIFDID 400 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~----g~-------~i~v~nR~ 400 (403)
.+++..+++++|||-++-+|+.-|.+. |. +|++++|.
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~ 68 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSK 68 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETT
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEecc
Confidence 456778999999999988888777655 86 49999874
No 381
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=78.32 E-value=65 Score=30.85 Aligned_cols=193 Identities=18% Similarity=0.148 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcC---
Q 015614 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG--- 98 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g--- 98 (403)
++.+.-++...+.|+|.||+=.....+ ++.+.+..+++.. +.++..-+|... +-++.+++.+
T Consensus 20 ~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~~~~l~~~~~~~~~~~l~r~~~-------------~~v~~a~~~~~~~ 85 (268)
T cd07940 20 EEKLEIARQLDELGVDVIEAGFPAASP-GDFEAVKRIAREVLNAEICGLARAVK-------------KDIDAAAEALKPA 85 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCH-HHHHHHHHHHHhCCCCEEEEEccCCH-------------hhHHHHHHhCCCC
Confidence 333444444456799999996432211 1234555565433 455555555431 2245566666
Q ss_pred -CcEEEEeccccch------------HHH---HH-HhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe
Q 015614 99 -ADYVDFELKVASN------------ILG---KQ-YSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF 161 (403)
Q Consensus 99 -~~yvDiEl~~~~~------------~~~---~l-~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~ 161 (403)
++.|.+=....+. .++ +. ...+..+.++..+.=+...+ +.+.+.++++++.++|+|.+-++=
T Consensus 86 ~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~i~l~D 164 (268)
T cd07940 86 KVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRT-DLDFLIEVVEAAIEAGATTINIPD 164 (268)
T ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCC-CHHHHHHHHHHHHHcCCCEEEECC
Confidence 8888885443211 111 12 22333455555444332222 467899999999999999887775
Q ss_pred ecC--CHhHHHHHHHHhccC-C---CCEEEEEcCccch--hhhhhcCCCCCcccccccCC-CCCCCCCCHHHHHhhhh
Q 015614 162 SVN--DITEIARIFQLLSHC-Q---VPIIAYSVGERGL--VSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK 230 (403)
Q Consensus 162 ~~~--~~~D~~~ll~~~~~~-~---~p~i~~~MG~~G~--~SRil~~~~gs~lty~~~~~-~sApGQ~~~~~l~~~~~ 230 (403)
+.- ++.++..+++.+.+. + .|+-.=+=-..|. ..=+..-..|..+.=+++.+ +-+.|+++.+++...++
T Consensus 165 T~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG~~aGN~~tE~lv~~L~ 242 (268)
T cd07940 165 TVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGERAGNAALEEVVMALK 242 (268)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeeccccccccccHHHHHHHHH
Confidence 553 588888888876543 2 3432111111111 11111111233333233322 24567788877765554
No 382
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=78.23 E-value=69 Score=31.83 Aligned_cols=152 Identities=16% Similarity=0.176 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCC-----CCCCchHHHHHHhcC--CCcEEEEeecCCCCCCCCCCHHHHHHHHHH
Q 015614 21 SVEQVLSNMYQAKAEGADVVEIRLDCIN-----NFQPGKDLEIILTKK--PLPVLIVYRPKWAGGLYEGDEHKRLEALHL 93 (403)
Q Consensus 21 ~~~e~~~~~~~~~~~~~D~vElRlD~l~-----~~~~~~~l~~l~~~~--~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~ 93 (403)
+.+++.++++++.+.|.+.+++.+..-. ...+.+.+..+|+.. +.++.+ .- . +.| +.++-+++++.
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~v--Da--N-~~~--~~~~a~~~~~~ 211 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMV--DA--N-GRW--DLAEAIRLARA 211 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEE--EC--C-CCC--CHHHHHHHHHH
Confidence 6888988898888899999999886421 001134566777654 445544 32 1 224 45667778888
Q ss_pred HHHcCCcEEEEeccccch---HHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC-CHhHH
Q 015614 94 AEDLGADYVDFELKVASN---ILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN-DITEI 169 (403)
Q Consensus 94 ~~~~g~~yvDiEl~~~~~---~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~-~~~D~ 169 (403)
+-+.+++|+. --.+.+ ..+.++. ..++.|++--+. .+.+++.+.++. -.+|++-+=.+-. .....
T Consensus 212 l~~~~i~~iE--qP~~~~~~~~~~~l~~--~~~ipi~~dE~~----~~~~~~~~~i~~---~~~d~v~~k~~~~GGi~~~ 280 (357)
T cd03316 212 LEEYDLFWFE--EPVPPDDLEGLARLRQ--ATSVPIAAGENL----YTRWEFRDLLEA---GAVDIIQPDVTKVGGITEA 280 (357)
T ss_pred hCccCCCeEc--CCCCccCHHHHHHHHH--hCCCCEEecccc----ccHHHHHHHHHh---CCCCEEecCccccCCHHHH
Confidence 7777888854 333322 2233332 234555553221 123344443332 3478888765554 58999
Q ss_pred HHHHHHhccCCCCEEEEEcCc
Q 015614 170 ARIFQLLSHCQVPIIAYSVGE 190 (403)
Q Consensus 170 ~~ll~~~~~~~~p~i~~~MG~ 190 (403)
.++.++....+.++..=||++
T Consensus 281 ~~i~~~a~~~g~~~~~~~~~~ 301 (357)
T cd03316 281 KKIAALAEAHGVRVAPHGAGG 301 (357)
T ss_pred HHHHHHHHHcCCeEeccCCCC
Confidence 999999888888876656655
No 383
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=78.22 E-value=8.7 Score=37.30 Aligned_cols=94 Identities=14% Similarity=0.172 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccc---------------chHHHHHHh-ccCCCcEEEEeccCCC--CCC-CHhH
Q 015614 81 EGDEHKRLEALHLAEDLGADYVDFELKVA---------------SNILGKQYS-SHQSGTRFIVSCNLDC--ETP-SEED 141 (403)
Q Consensus 81 ~~~~~~~~~ll~~~~~~g~~yvDiEl~~~---------------~~~~~~l~~-~~~~~~kiI~S~H~f~--~tp-~~~~ 141 (403)
..+-+.+.+++..|.+.|.+||=||.... ...+++|+. ++..+++|++=+|.-. ... -..+
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~ 107 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQ 107 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHH
Confidence 44667888899999999999999986663 335667763 4578999999888621 001 1123
Q ss_pred HHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHH
Q 015614 142 LGYLVSRMQATGADIIKLVFSVNDITEIARIFQ 174 (403)
Q Consensus 142 l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~ 174 (403)
+.+.+.++++.|..-||+=++..+.+...+..+
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~ 140 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYE 140 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHH
Confidence 688899999999999999999998777655443
No 384
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=78.16 E-value=15 Score=37.25 Aligned_cols=90 Identities=18% Similarity=0.106 Sum_probs=55.4
Q ss_pred cccCCHHHHHHH----HHHHHhcCCCEEEEEecC------C-CCC----CC-------------chHHHHHHhcCCCcEE
Q 015614 17 LMAQSVEQVLSN----MYQAKAEGADVVEIRLDC------I-NNF----QP-------------GKDLEIILTKKPLPVL 68 (403)
Q Consensus 17 l~~~~~~e~~~~----~~~~~~~~~D~vElRlD~------l-~~~----~~-------------~~~l~~l~~~~~~PiI 68 (403)
++..++++++++ .+.|.+.|.|.|||--=. | .+. ++ .+.+..+|+..+-..+
T Consensus 139 mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~ 218 (363)
T COG1902 139 LTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFP 218 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCce
Confidence 455555554443 455577999999996532 1 111 11 1455566666666667
Q ss_pred EEeecC-CCCCCC-CCCHHHHHHHHHHHHHcC-CcEEEEec
Q 015614 69 IVYRPK-WAGGLY-EGDEHKRLEALHLAEDLG-ADYVDFEL 106 (403)
Q Consensus 69 ~T~R~~-~eGG~~-~~~~~~~~~ll~~~~~~g-~~yvDiEl 106 (403)
+.+|-. .|-+.- -.+.++..++.+.+.+.| ++|+++--
T Consensus 219 vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~ 259 (363)
T COG1902 219 VGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSE 259 (363)
T ss_pred EEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeec
Confidence 788833 222111 235678899999999999 79999843
No 385
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=78.12 E-value=29 Score=31.85 Aligned_cols=89 Identities=17% Similarity=0.301 Sum_probs=58.2
Q ss_pred eeEEEecccCC----HHHHHHHHHHHHhcCCCEEEEEecCCC--CCC---CchHHHHHHhcC-CCcEEEEeecCCCCCCC
Q 015614 11 TMICAPLMAQS----VEQVLSNMYQAKAEGADVVEIRLDCIN--NFQ---PGKDLEIILTKK-PLPVLIVYRPKWAGGLY 80 (403)
Q Consensus 11 ~~icv~l~~~~----~~e~~~~~~~~~~~~~D~vElRlD~l~--~~~---~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~ 80 (403)
..+++.+.+|. .+....+++++++.|||.|++-++.-. +-+ ..+.+..+++.. ++|+.+-+-. |.
T Consensus 53 ~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~----~~- 127 (203)
T cd00959 53 VKVCTVIGFPLGATTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILET----GL- 127 (203)
T ss_pred cEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEec----CC-
Confidence 56666665444 577788899999999999999999642 211 124555666544 5676552222 22
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEe
Q 015614 81 EGDEHKRLEALHLAEDLGADYVDFE 105 (403)
Q Consensus 81 ~~~~~~~~~ll~~~~~~g~~yvDiE 105 (403)
.++++-...-+.+.++|+|||=.-
T Consensus 128 -l~~~~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 128 -LTDEEIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred -CCHHHHHHHHHHHHHhCCCEEEcC
Confidence 246666777788899999986544
No 386
>PLN02487 zeta-carotene desaturase
Probab=78.08 E-value=3.3 Score=44.47 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=30.2
Q ss_pred CeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
++++|+|+|-++.++++.|.+.|.+|+|+.+..
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~ 108 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRP 108 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCC
Confidence 599999999999999999999999999998753
No 387
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=77.99 E-value=3.3 Score=33.31 Aligned_cols=36 Identities=36% Similarity=0.588 Sum_probs=27.3
Q ss_pred CCeEEEEcchhHHHHHHHHHH-HCCC-eEEEEecCCCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAK-SRGA-RVVIFDIDFGT 403 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~-~~g~-~i~v~nR~~~k 403 (403)
..+++|+|+|+.+++.+|.+. ..|. -+.+++.++++
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~ 40 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEK 40 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTT
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCc
Confidence 357999999999999998764 4576 45777776653
No 388
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=77.98 E-value=2.3 Score=41.89 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=31.2
Q ss_pred CCeEEEEcchhHHHHHHHHHHHC-CC-eEEEEecCCCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFGT 403 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~-g~-~i~v~nR~~~k 403 (403)
.+++.|+|+|.-|+.-+.++... .. +|+|+||+++|
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~ 154 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDH 154 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHH
Confidence 47899999999999999998765 56 89999999764
No 389
>PLN02712 arogenate dehydrogenase
Probab=77.95 E-value=3.6 Score=45.02 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=33.3
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
...++++.|||.|..|++++.+|.+.|.+|++++|+.
T Consensus 366 ~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~ 402 (667)
T PLN02712 366 DGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSD 402 (667)
T ss_pred CCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECCh
Confidence 4467899999999999999999999999999999974
No 390
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=77.90 E-value=2.6 Score=41.43 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=29.3
Q ss_pred CCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.|++++|.|+ |+.+.+++.-++.+|++|+.+.++.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~ 186 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSD 186 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4789999997 9999999988888999877766654
No 391
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=77.71 E-value=65 Score=31.19 Aligned_cols=140 Identities=20% Similarity=0.203 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEec-CCCCC---CC---chHHHHHHhc-CCCcEEEEeecCCCCCCCCCCHHHHHHHHH
Q 015614 21 SVEQVLSNMYQAKAEGADVVEIRLD-CINNF---QP---GKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALH 92 (403)
Q Consensus 21 ~~~e~~~~~~~~~~~~~D~vElRlD-~l~~~---~~---~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 92 (403)
+.+|+..+..++.+.||.+|=+-.- --... ++ .+.+..+|+. .++++=+| -||....+.++|++.++
T Consensus 24 tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~T-----tg~~~~~~~~~R~~~v~ 98 (272)
T PF05853_consen 24 TPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPT-----TGGGGGPDPEERLAHVE 98 (272)
T ss_dssp SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEE-----SSTTTTSGHHHHCTHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeC-----CCCCCCCCHHHHHHHHH
Confidence 6788888888888999999988765 22211 11 2456677766 56666666 23333456688998887
Q ss_pred HHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccC--CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHH
Q 015614 93 LAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNL--DCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIA 170 (403)
Q Consensus 93 ~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~--f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~ 170 (403)
.. .+|.+-+++....- + ..+ |.++ .+.+.+.++.|++.| +|.-...-+..++.
T Consensus 99 ~~---~pd~asl~~gs~n~----------~-------~~~~~~~n~--~~~~~~~~~~~~e~G---i~pe~ev~d~~~l~ 153 (272)
T PF05853_consen 99 AW---KPDMASLNPGSMNF----------G-------TRDRVYINT--PADARELARRMRERG---IKPEIEVFDPGHLR 153 (272)
T ss_dssp HH-----SEEEEE-S-EEE----------S-------GGCSEE-----HHHHHHHHHHHHHTT----EEEEEESSHHHHH
T ss_pred hc---CCCeEEeccccccc----------c-------cCCceecCC--HHHHHHHHHHHHHcC---CeEEEEEEcHHHHH
Confidence 76 58888777654321 0 111 2223 467999999999999 56666666888887
Q ss_pred HHHHHhccC---CCCEEEEEcCc
Q 015614 171 RIFQLLSHC---QVPIIAYSVGE 190 (403)
Q Consensus 171 ~ll~~~~~~---~~p~i~~~MG~ 190 (403)
.+.++..+- ....+-+.||.
T Consensus 154 ~~~~l~~~G~l~~p~~~~~vlG~ 176 (272)
T PF05853_consen 154 NARRLIEKGLLPGPLLVNFVLGV 176 (272)
T ss_dssp HHHHHHHTTSS-SSEEEEEEES-
T ss_pred HHHHHHHCCCCCCCeEEEEcccC
Confidence 777765432 33455556644
No 392
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=77.63 E-value=2.8 Score=45.50 Aligned_cols=32 Identities=28% Similarity=0.527 Sum_probs=29.7
Q ss_pred CeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
..++|||+|-+|-++++.|+..|.+|.|+.|.
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~ 103 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGLRVGLVERE 103 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 46999999999999999999999999999885
No 393
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=77.62 E-value=3.1 Score=42.15 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=30.6
Q ss_pred CCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecC
Q 015614 368 GRMFVLAG-AGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 368 ~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~ 400 (403)
.+++.|+| .|..|++++.+|.+.|..|++++|+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 47899999 8999999999999999999999985
No 394
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=77.54 E-value=18 Score=36.01 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=32.2
Q ss_pred HHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccc
Q 015614 59 ILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVAS 110 (403)
Q Consensus 59 l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~ 110 (403)
+++..+.|+|+.++. .+.+++.++.+.+.+.|+++|++-+..++
T Consensus 96 ~~~~~~~pvi~sI~g--------~~~~e~~~~a~~~~~agad~ielN~scpp 139 (334)
T PRK07565 96 AKEAVDIPVIASLNG--------SSAGGWVDYARQIEQAGADALELNIYYLP 139 (334)
T ss_pred HHHhcCCcEEEEecc--------CCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 334457899999963 24567778888888889999998876533
No 395
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=77.50 E-value=2.6 Score=41.80 Aligned_cols=35 Identities=40% Similarity=0.471 Sum_probs=30.7
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~ 401 (403)
.+++++|.|+|+.+.+++..++.+|+ +|+++.++.
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~ 212 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSP 212 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 57899999999999999998999999 888887654
No 396
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=77.31 E-value=33 Score=34.01 Aligned_cols=102 Identities=13% Similarity=0.082 Sum_probs=54.8
Q ss_pred HHHHHhc--CCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccch----------HHHHH----Hhc
Q 015614 56 LEIILTK--KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASN----------ILGKQ----YSS 119 (403)
Q Consensus 56 l~~l~~~--~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~----------~~~~l----~~~ 119 (403)
+..+++. .+.|+|+.+-..... ..+...+++.+..+.+.. .++|+++.+..+.. ...++ +..
T Consensus 118 ~~~l~~~~~~~~plivsi~g~~~~-~~~~~~~d~~~~~~~~~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~ 195 (327)
T cd04738 118 AKRLKKRRPRGGPLGVNIGKNKDT-PLEDAVEDYVIGVRKLGP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEE 195 (327)
T ss_pred HHHHHHhccCCCeEEEEEeCCCCC-cccccHHHHHHHHHHHHh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHH
Confidence 4444432 368999998532211 123345777777777655 39999999866531 22222 211
Q ss_pred cC---CCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEee
Q 015614 120 HQ---SGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFS 162 (403)
Q Consensus 120 ~~---~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~ 162 (403)
.. ....|++-.-. ..+.+++.++.+.+.+.|+|.+.+.-+
T Consensus 196 ~~~~~~~~Pv~vKl~~---~~~~~~~~~ia~~l~~aGad~I~~~n~ 238 (327)
T cd04738 196 RNKLGKKVPLLVKIAP---DLSDEELEDIADVALEHGVDGIIATNT 238 (327)
T ss_pred HhhcccCCCeEEEeCC---CCCHHHHHHHHHHHHHcCCcEEEEECC
Confidence 10 01223333210 012346777777777788887776543
No 397
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=77.19 E-value=2.7 Score=42.17 Aligned_cols=36 Identities=33% Similarity=0.317 Sum_probs=31.0
Q ss_pred CCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT 403 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k 403 (403)
+.+++|+|+|..+..++..++..|+ +|.+++++++|
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~R 205 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPER 205 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHH
Confidence 3489999999999999888889998 89998887653
No 398
>PTZ00058 glutathione reductase; Provisional
Probab=77.12 E-value=3 Score=44.68 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=29.3
Q ss_pred CeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
-.++|||+|.+|.+++..+++.|.+|.++.|.
T Consensus 49 yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 49 YDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 36999999999999999999999999999874
No 399
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=77.06 E-value=69 Score=30.51 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 015614 20 QSVEQVLSNMYQAKAEGADVVEIRLDCIN 48 (403)
Q Consensus 20 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~ 48 (403)
-++++.++ .+.+.|.|.||+.+|...
T Consensus 10 ~~l~~~l~---~a~~~G~d~vEl~~~~~~ 35 (279)
T cd00019 10 FGLENALK---RAKEIGFDTVAMFLGNPR 35 (279)
T ss_pred ccHHHHHH---HHHHcCCCEEEEEcCCCC
Confidence 44555544 445679999999998764
No 400
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=77.00 E-value=84 Score=31.46 Aligned_cols=148 Identities=14% Similarity=0.194 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015614 20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA 99 (403)
Q Consensus 20 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~ 99 (403)
.|.+.-++|+.+..+.|||.|=+-+.-.+ ..+.+..+++..++|++.-+- |+ ..+-..+++.|+
T Consensus 31 ~Dv~atv~QI~~L~~aGceiVRvavp~~~---~A~al~~I~~~~~iPlVADIH-------Fd------~~lAl~a~~~g~ 94 (346)
T TIGR00612 31 IDIDSTVAQIRALEEAGCDIVRVTVPDRE---SAAAFEAIKEGTNVPLVADIH-------FD------YRLAALAMAKGV 94 (346)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEcCCCHH---HHHhHHHHHhCCCCCEEEeeC-------CC------cHHHHHHHHhcc
Confidence 45677788888888999999977554333 246788888889999996543 11 112223344455
Q ss_pred cEEEEecccc--chHHHHHH-hccCCCcEE-EEeccC---------C-CCCCC--HhHHHHHHHHHHHcCCCEEEEEeec
Q 015614 100 DYVDFELKVA--SNILGKQY-SSHQSGTRF-IVSCNL---------D-CETPS--EEDLGYLVSRMQATGADIIKLVFSV 163 (403)
Q Consensus 100 ~yvDiEl~~~--~~~~~~l~-~~~~~~~ki-I~S~H~---------f-~~tp~--~~~l~~~~~~~~~~gadivKia~~~ 163 (403)
+-+-|.=-.. ++.++.+. ..+..++-| |+--|= + ..||. .+...+..+.+.++|.+=+|+-..+
T Consensus 95 dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~Ks 174 (346)
T TIGR00612 95 AKVRINPGNIGFRERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMKA 174 (346)
T ss_pred CeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEc
Confidence 5544432111 11222222 122222222 222210 1 12442 2446677778888998888898998
Q ss_pred CCHhHHHHHHHHhcc-CCCCE
Q 015614 164 NDITEIARIFQLLSH-CQVPI 183 (403)
Q Consensus 164 ~~~~D~~~ll~~~~~-~~~p~ 183 (403)
.+..+..+..+.+.+ .+.|+
T Consensus 175 Sdv~~~i~ayr~la~~~dyPL 195 (346)
T TIGR00612 175 SDVAETVAAYRLLAERSDYPL 195 (346)
T ss_pred CCHHHHHHHHHHHHhhCCCCc
Confidence 888888777776543 46664
No 401
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=76.99 E-value=64 Score=30.03 Aligned_cols=150 Identities=18% Similarity=0.149 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEecCCCC--C--CCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHH
Q 015614 20 QSVEQVLSNMYQAKAEGADVVEIRLDCINN--F--QPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAE 95 (403)
Q Consensus 20 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~--~--~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~ 95 (403)
.++.++.+.++ +.|+|.+=+ +|+-.. . ...+.++.+++..+.|+++. ||-... +. ++.++
T Consensus 30 ~dp~~~a~~~~---~~g~~~i~i-~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~------ggi~~~--~d----~~~~~ 93 (232)
T TIGR03572 30 GDPVNAARIYN---AKGADELIV-LDIDASKRGREPLFELISNLAEECFMPLTVG------GGIRSL--ED----AKKLL 93 (232)
T ss_pred CCHHHHHHHHH---HcCCCEEEE-EeCCCcccCCCCCHHHHHHHHHhCCCCEEEE------CCCCCH--HH----HHHHH
Confidence 46777776663 468884433 333221 1 12345677777789999874 554322 21 12234
Q ss_pred HcCCcEEEEeccccc--hHHHHHHhccCCCcEEEEeccCCCC--------------CCCHhHHHHHHHHHHHcCCCEEEE
Q 015614 96 DLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVSCNLDCE--------------TPSEEDLGYLVSRMQATGADIIKL 159 (403)
Q Consensus 96 ~~g~~yvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~f~~--------------tp~~~~l~~~~~~~~~~gadivKi 159 (403)
+.|++.|++--.... ++++++.... +..+|++|.=.-.+ +-+..+..+..+++.+.|+|.+=+
T Consensus 94 ~~G~~~vilg~~~l~~~~~~~~~~~~~-~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i 172 (232)
T TIGR03572 94 SLGADKVSINTAALENPDLIEEAARRF-GSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILL 172 (232)
T ss_pred HcCCCEEEEChhHhcCHHHHHHHHHHc-CCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEE
Confidence 568999998654433 3445554321 33347777432111 001133567778888889886554
Q ss_pred EeecCC----HhHHHHHHHHhccCCCCEEEE
Q 015614 160 VFSVND----ITEIARIFQLLSHCQVPIIAY 186 (403)
Q Consensus 160 a~~~~~----~~D~~~ll~~~~~~~~p~i~~ 186 (403)
.-...+ ..|...+-++....+.|+++.
T Consensus 173 ~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~ 203 (232)
T TIGR03572 173 NSIDRDGTMKGYDLELIKTVSDAVSIPVIAL 203 (232)
T ss_pred eCCCccCCcCCCCHHHHHHHHhhCCCCEEEE
Confidence 432221 112233333334446776653
No 402
>PRK08999 hypothetical protein; Provisional
Probab=76.96 E-value=71 Score=31.13 Aligned_cols=133 Identities=20% Similarity=0.227 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhcCCCEEEEEecCCCCCCCch---HHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCc
Q 015614 24 QVLSNMYQAKAEGADVVEIRLDCINNFQPGK---DLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGAD 100 (403)
Q Consensus 24 e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~---~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~ 100 (403)
++...++.++..|+++|-+|.-.+...+..+ ++..+.+..+.|+|+.-| .+.+.++|++
T Consensus 145 ~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~~~~l~~~~~~~~~~liind~------------------~~la~~~~~~ 206 (312)
T PRK08999 145 AFLARLERALAAGIRLIQLRAPQLPPAAYRALARAALGLCRRAGAQLLLNGD------------------PELAEDLGAD 206 (312)
T ss_pred HHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEECc------------------HHHHHhcCCC
Confidence 4556677778899999999987555322222 233333455789988733 1345677888
Q ss_pred EEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec--CCHhH-----HHHHH
Q 015614 101 YVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV--NDITE-----IARIF 173 (403)
Q Consensus 101 yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~--~~~~D-----~~~ll 173 (403)
.|=+--...... ..+. ...+..|-+|.|+ .++ ..++.+.|+|.+=+-..- .|..+ ...+-
T Consensus 207 GvHl~~~d~~~~--~~r~-~~~~~~ig~S~h~------~~~----~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~ 273 (312)
T PRK08999 207 GVHLTSAQLAAL--AARP-LPAGRWVAASCHD------AEE----LARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFA 273 (312)
T ss_pred EEEcChhhcChH--hhcc-CCCCCEEEEecCC------HHH----HHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHH
Confidence 876654322211 1111 1233445588896 223 345667799987554221 12111 22223
Q ss_pred HHhccCCCCEEEEE
Q 015614 174 QLLSHCQVPIIAYS 187 (403)
Q Consensus 174 ~~~~~~~~p~i~~~ 187 (403)
++....+.|+++++
T Consensus 274 ~~~~~~~~Pv~AiG 287 (312)
T PRK08999 274 ALIAGVPLPVYALG 287 (312)
T ss_pred HHHHhCCCCEEEEC
Confidence 33344467877764
No 403
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=76.81 E-value=3.4 Score=43.91 Aligned_cols=122 Identities=16% Similarity=0.231 Sum_probs=70.6
Q ss_pred eeccCCcccCCHHHHHHHHHhcCCCceEeecCc---ccHHHHHHHhcCCCCceEEe-cccchHHHHcccccCCHHHhhcc
Q 015614 243 LISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV---DDLKKFFSTYSSPDFAGFSV-GFPYKEAVMKFCDEVHPLAQAIA 318 (403)
Q Consensus 243 liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~---~~~~~~~~~~~~~~~~G~~V-T~P~K~~v~~~~d~~~~~A~~ig 318 (403)
+.|-||-++.- -....++++.+.....+.. +..+.+++.+... |+.| ++|.=.+++. ..+. .+.+.
T Consensus 158 i~Gv~V~g~~~---i~~~v~~~~~~~iiiAips~~~~~~~~i~~~l~~~---~~~v~~lP~~~~l~~---~~~~-lreI~ 227 (588)
T COG1086 158 IRGVPVLGRIE---IERVVEELGIQLILIAIPSASQEERRRILLRLART---GIAVRILPQLTDLKD---LNGQ-LREIE 227 (588)
T ss_pred EeceeeechhH---HHHHHHHcCCceEEEecCCCCHHHHHHHHHHHHhc---CCcEEecCcHHHHHH---hccc-cccCC
Confidence 44566666544 4567788888866665543 4566777666443 3333 3344333332 1111 12221
Q ss_pred ceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH-HHHHHHHHHHCCC-eEEE
Q 015614 319 AVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGA-RVVI 396 (403)
Q Consensus 319 avNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa-arai~~al~~~g~-~i~v 396 (403)
.-+.+-|+| --.|..-+.+ .+.||+++|-||||. |+.++-.+.+.+. +|.+
T Consensus 228 ieDLLgR~p-------V~~d~~~i~~--------------------~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l 280 (588)
T COG1086 228 IEDLLGRPP-------VALDTELIGA--------------------MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIIL 280 (588)
T ss_pred HHHHhCCCC-------CCCCHHHHHh--------------------HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEE
Confidence 111121211 0122222221 256899999999999 9999999999998 8999
Q ss_pred EecCC
Q 015614 397 FDIDF 401 (403)
Q Consensus 397 ~nR~~ 401 (403)
++|+.
T Consensus 281 ~~~~E 285 (588)
T COG1086 281 FSRDE 285 (588)
T ss_pred ecCch
Confidence 99974
No 404
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=76.77 E-value=3 Score=47.62 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=33.0
Q ss_pred CCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 366 ~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
..|+++.|||+|.++.|++-.|.+.|..|+|+.|+.
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence 358999999999999999999999999999999863
No 405
>PRK06199 ornithine cyclodeaminase; Validated
Probab=76.71 E-value=2.4 Score=43.18 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=31.1
Q ss_pred CCeEEEEcchhHHHHHHHHHHHC--CC-eEEEEecCCCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSR--GA-RVVIFDIDFGT 403 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~--g~-~i~v~nR~~~k 403 (403)
.+++.|+|+|.-|+.-+.++... .. +|+|+||++++
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~ 193 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKS 193 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHH
Confidence 47899999999999999998874 37 89999999753
No 406
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=76.56 E-value=4.1 Score=40.72 Aligned_cols=39 Identities=23% Similarity=0.265 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
..+.||++.|+|.|..+++++.-|...|+.|.-.+|+..
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~ 196 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQL 196 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCC
Confidence 456799999999999999999999999987888888653
No 407
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=76.48 E-value=68 Score=30.14 Aligned_cols=86 Identities=15% Similarity=0.281 Sum_probs=60.1
Q ss_pred CCeeEEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC-----CCC-chHHHHHHhcCCCcEEEEeecCCCCCCCCC
Q 015614 9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN-----FQP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEG 82 (403)
Q Consensus 9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~-----~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~ 82 (403)
.+.+|.-||..-|..-+..+++...+.|+|.+=+ |.+.. +.- ...++.+|+.++.|+=+++=-.
T Consensus 2 ~~~~iapSILsaD~~~l~~el~~~~~agad~iH~--DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~-------- 71 (220)
T COG0036 2 KMMKIAPSILSADFARLGEELKALEAAGADLIHI--DVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVE-------- 71 (220)
T ss_pred CCceeeeehhhCCHhHHHHHHHHHHHcCCCEEEE--eccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecC--------
Confidence 3567888999999998888898887789999765 76652 111 2578888887788877765421
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc
Q 015614 83 DEHKRLEALHLAEDLGADYVDFELK 107 (403)
Q Consensus 83 ~~~~~~~ll~~~~~~g~~yvDiEl~ 107 (403)
+.+.| ++..++.|++||-+=.+
T Consensus 72 ~p~~~---i~~fa~agad~It~H~E 93 (220)
T COG0036 72 NPDRY---IEAFAKAGADIITFHAE 93 (220)
T ss_pred CHHHH---HHHHHHhCCCEEEEEec
Confidence 23333 45667777888766444
No 408
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=76.30 E-value=3.6 Score=43.01 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=32.1
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
.+++|+|+|+|+|-.|.-++..|...+.+|+++.|.
T Consensus 201 ~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 201 PFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 457899999999999999999999887799998884
No 409
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=76.29 E-value=4.1 Score=41.92 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=30.7
Q ss_pred CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.++++|+|+|-+|-.++..|.++|.+|+++.|..
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~ 190 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS 190 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 4789999999999999999999999999998853
No 410
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=76.24 E-value=64 Score=31.50 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=30.6
Q ss_pred CCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccccc
Q 015614 64 PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVAS 110 (403)
Q Consensus 64 ~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~ 110 (403)
+.|+|+.+--. .+.+++.+..+.+.+.|+++||+.+..+.
T Consensus 99 ~~p~i~si~G~-------~~~~~~~~~a~~~~~~gad~ielN~sCP~ 138 (299)
T cd02940 99 DKILIASIMCE-------YNKEDWTELAKLVEEAGADALELNFSCPH 138 (299)
T ss_pred CCeEEEEecCC-------CCHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 57999887521 14578888888887788999999988765
No 411
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=76.23 E-value=52 Score=32.91 Aligned_cols=131 Identities=14% Similarity=0.138 Sum_probs=82.4
Q ss_pred EEeeeccCCcccCCHHHHHHHHHhcCCCceEeecC---c---ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHH
Q 015614 240 VFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMF---V---DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPL 313 (403)
Q Consensus 240 ~~~liG~pi~hS~SP~ihn~~~~~~gl~~~y~~~~---~---~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~ 313 (403)
..-+|=.|-. |+-.=+..+.+.||....|.... . +.+.+....+..- +.++-+=.|-...+-.+
T Consensus 49 v~~lF~epST--RTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~rvls~y-~D~iviR~~~~~~~~~~------- 118 (331)
T PRK02102 49 IALIFEKTST--RTRCAFEVAAIDLGAHVTYLGPNDSQLGKKESIEDTARVLGRM-YDGIEYRGFKQEIVEEL------- 118 (331)
T ss_pred EEEEeCCCCh--hHHHHHHHHHHHcCCCEEEcCcccccCCCCcCHHHHHHHHhhc-CCEEEEECCchHHHHHH-------
Confidence 3446666644 55556688999999988876432 1 5677777776433 66666665533333222
Q ss_pred HhhccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcch--hHHHHHHHHHHHCC
Q 015614 314 AQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG--GAGRALAFGAKSRG 391 (403)
Q Consensus 314 A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaG--Gaarai~~al~~~g 391 (403)
|+..+. -|++- .++ ..+=|=...=+.++++..+ .++|.+++++|.+ +++++.+.++..+|
T Consensus 119 a~~~~v--PVINa-~~~--~~HPtQaLaDl~Ti~e~~g-------------~l~g~~va~vGd~~~~v~~Sl~~~~~~~g 180 (331)
T PRK02102 119 AKYSGV--PVWNG-LTD--EWHPTQMLADFMTMKEHFG-------------PLKGLKLAYVGDGRNNMANSLMVGGAKLG 180 (331)
T ss_pred HHhCCC--CEEEC-CCC--CCChHHHHHHHHHHHHHhC-------------CCCCCEEEEECCCcccHHHHHHHHHHHcC
Confidence 222111 13332 122 3455655555556655432 3678999999986 89999999999999
Q ss_pred CeEEEEe
Q 015614 392 ARVVIFD 398 (403)
Q Consensus 392 ~~i~v~n 398 (403)
++|+++.
T Consensus 181 ~~v~~~~ 187 (331)
T PRK02102 181 MDVRICA 187 (331)
T ss_pred CEEEEEC
Confidence 9988875
No 412
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=76.13 E-value=2.7 Score=42.06 Aligned_cols=34 Identities=38% Similarity=0.540 Sum_probs=28.9
Q ss_pred CCeEEEEcchhHHHHHHHHHHHC----CCeEEEEecCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSR----GARVVIFDIDF 401 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~----g~~i~v~nR~~ 401 (403)
...++|||.||.+.+++|-|++. |.+|.|+.|+.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd 123 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD 123 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccC
Confidence 46799999999999999999754 56899998863
No 413
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=76.13 E-value=38 Score=31.56 Aligned_cols=90 Identities=19% Similarity=0.230 Sum_probs=60.1
Q ss_pred CeeEEEecccCC----HHHHHHHHHHHHhcCCCEEEEEecCCC--CCCC---chHHHHHHhcC-CCcEEEEeecCCCCCC
Q 015614 10 TTMICAPLMAQS----VEQVLSNMYQAKAEGADVVEIRLDCIN--NFQP---GKDLEIILTKK-PLPVLIVYRPKWAGGL 79 (403)
Q Consensus 10 ~~~icv~l~~~~----~~e~~~~~~~~~~~~~D~vElRlD~l~--~~~~---~~~l~~l~~~~-~~PiI~T~R~~~eGG~ 79 (403)
..++|..+.+|. .+.-..+++++...|||.|++-+++-. +-+. .+.++.+++.. +.|+.+-+-+ |.
T Consensus 53 ~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~----~~ 128 (211)
T TIGR00126 53 EVRICTVVGFPLGASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIET----GL 128 (211)
T ss_pred CCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEec----CC
Confidence 567888777664 456677888999999999999999743 2111 23455555543 5665553322 33
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015614 80 YEGDEHKRLEALHLAEDLGADYVDFE 105 (403)
Q Consensus 80 ~~~~~~~~~~ll~~~~~~g~~yvDiE 105 (403)
.++++....-+.+.+.|+|||=.-
T Consensus 129 --L~~~ei~~a~~ia~eaGADfvKTs 152 (211)
T TIGR00126 129 --LTDEEIRKACEICIDAGADFVKTS 152 (211)
T ss_pred --CCHHHHHHHHHHHHHhCCCEEEeC
Confidence 456666788888999999996543
No 414
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=76.06 E-value=3.6 Score=40.33 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=30.8
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
.+++++|.|+|+.+.+++..++..|++|+++.++.+
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~ 198 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSD 198 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChH
Confidence 468999999999999999988999998888877643
No 415
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=76.04 E-value=2.9 Score=41.67 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=28.9
Q ss_pred CCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.|.+++|.|+ |+.+.+++..++.+|++|+.+.++.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~ 193 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSS 193 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 4789999998 8999999888888999877666543
No 416
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=76.02 E-value=9.1 Score=39.16 Aligned_cols=57 Identities=28% Similarity=0.351 Sum_probs=41.6
Q ss_pred EEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcc-----------------hhHHHHHHHHHHHCCCeEEE
Q 015614 334 GYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-----------------GGAGRALAFGAKSRGARVVI 396 (403)
Q Consensus 334 G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGa-----------------GGaarai~~al~~~g~~i~v 396 (403)
|---+..-++..+.+.+.. ..+++|++++|-|+ |..|++++.+|...|++|++
T Consensus 161 g~~~~~~~i~~~v~~~~~~----------~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~ 230 (390)
T TIGR00521 161 GRLAEPETIVKAAEREFSP----------KEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTL 230 (390)
T ss_pred CCCCCHHHHHHHHHHHHhh----------ccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEE
Confidence 3345555666666665531 12477999999987 46999999999999999888
Q ss_pred EecC
Q 015614 397 FDID 400 (403)
Q Consensus 397 ~nR~ 400 (403)
+.+.
T Consensus 231 ~~g~ 234 (390)
T TIGR00521 231 ITGP 234 (390)
T ss_pred eCCC
Confidence 7764
No 417
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=75.99 E-value=2.9 Score=44.51 Aligned_cols=38 Identities=18% Similarity=0.353 Sum_probs=32.1
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
..++||+|||+|+|-+|-=|+..|.....+|++.-|+.
T Consensus 179 ~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 179 EPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp GGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred hhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 35789999999999999999999988766999988864
No 418
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=75.93 E-value=3.1 Score=40.84 Aligned_cols=35 Identities=26% Similarity=0.237 Sum_probs=29.3
Q ss_pred CCeEEEEcc-hhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614 368 GRMFVLAGA-GGAGRALAFGAKSRGA-RVVIFDIDFG 402 (403)
Q Consensus 368 ~~~~lilGa-GGaarai~~al~~~g~-~i~v~nR~~~ 402 (403)
+++++|.|+ ||.+.+++..++.+|+ +|+.+.++.+
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~ 191 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDE 191 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHH
Confidence 479999997 9999999888888999 7888877643
No 419
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=75.89 E-value=53 Score=31.55 Aligned_cols=146 Identities=16% Similarity=0.129 Sum_probs=77.6
Q ss_pred hcCCCEEEEEecCCC-----CCCC-----c---hHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHH-cCC
Q 015614 34 AEGADVVEIRLDCIN-----NFQP-----G---KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAED-LGA 99 (403)
Q Consensus 34 ~~~~D~vElRlD~l~-----~~~~-----~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~-~g~ 99 (403)
+.|+|++ +-=|.+. ..+. . ...+.+++..+.|+|+ .-. .- |.+..+.++-.+-..+.++ .|+
T Consensus 30 ~aG~d~i-~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~vi-aD~-~f-g~y~~~~~~av~~a~r~~~~aGa 105 (254)
T cd06557 30 EAGVDVI-LVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVV-ADM-PF-GSYQTSPEQALRNAARLMKEAGA 105 (254)
T ss_pred HcCCCEE-EECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEE-EeC-CC-CcccCCHHHHHHHHHHHHHHhCC
Confidence 4689999 4444431 1111 1 2334455667889554 221 11 3344556665555555555 899
Q ss_pred cEEEEeccccchHHHHHHhccCCCcEEE------EeccCCC-------CCCC-HhHHHHHHHHHHHcCCCEEEEEeecCC
Q 015614 100 DYVDFELKVASNILGKQYSSHQSGTRFI------VSCNLDC-------ETPS-EEDLGYLVSRMQATGADIIKLVFSVND 165 (403)
Q Consensus 100 ~yvDiEl~~~~~~~~~l~~~~~~~~kiI------~S~H~f~-------~tp~-~~~l~~~~~~~~~~gadivKia~~~~~ 165 (403)
+.|=||=.. +..+.+......+..++ -..+++. +|.. .+++.+....+.+.|||.+=+=..+
T Consensus 106 ~aVkiEd~~--~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v~-- 181 (254)
T cd06557 106 DAVKLEGGA--EVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECVP-- 181 (254)
T ss_pred eEEEEcCcH--HHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCCC--
Confidence 999999763 22222222222333333 2222221 1221 2456666666778999988775553
Q ss_pred HhHHHHHHHHhccCCCCEEEEEcCc
Q 015614 166 ITEIARIFQLLSHCQVPIIAYSVGE 190 (403)
Q Consensus 166 ~~D~~~ll~~~~~~~~p~i~~~MG~ 190 (403)
.+.. -++....+.|+|.|+-|+
T Consensus 182 ~~~~---~~i~~~v~iP~igiGaG~ 203 (254)
T cd06557 182 AELA---KEITEALSIPTIGIGAGP 203 (254)
T ss_pred HHHH---HHHHHhCCCCEEEeccCC
Confidence 2222 333444578999988776
No 420
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=75.77 E-value=3 Score=40.57 Aligned_cols=35 Identities=31% Similarity=0.325 Sum_probs=29.6
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCe-EEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~-i~v~nR~~ 401 (403)
.+.+++|+|+|+.+++++..++.+|++ |+++.++.
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~ 194 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNE 194 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence 468999999998999999888899995 88887764
No 421
>PRK06823 ornithine cyclodeaminase; Validated
Probab=75.64 E-value=2.9 Score=41.48 Aligned_cols=36 Identities=11% Similarity=0.072 Sum_probs=31.0
Q ss_pred CCeEEEEcchhHHHHHHHHHHHC-CC-eEEEEecCCCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFGT 403 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~-g~-~i~v~nR~~~k 403 (403)
.+++.|+|+|.-|+.-+.++... .. +|+|+||+++|
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~ 165 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETA 165 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHH
Confidence 47899999999999999998765 45 89999999764
No 422
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=75.57 E-value=45 Score=32.24 Aligned_cols=111 Identities=11% Similarity=0.072 Sum_probs=67.1
Q ss_pred EeecCCCC-CCCCCCHHHHHHHHHHHHHcCCcEEEEeccc---------cc---hHHHHHHhccCCCcEEEEec-----c
Q 015614 70 VYRPKWAG-GLYEGDEHKRLEALHLAEDLGADYVDFELKV---------AS---NILGKQYSSHQSGTRFIVSC-----N 131 (403)
Q Consensus 70 T~R~~~eG-G~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~---------~~---~~~~~l~~~~~~~~kiI~S~-----H 131 (403)
|+|.-+|. +....+.+++.++...+.+.|+++|++=... .+ +.++.+... .+++++..-. .
T Consensus 5 TlRDG~Qs~~~~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~-~~~~~l~~~~r~~~~~ 83 (275)
T cd07937 5 TLRDAHQSLLATRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKA-MPNTPLQMLLRGQNLV 83 (275)
T ss_pred cccchhhchhceeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHh-CCCCceehhccccccc
Confidence 66744333 1123577889999999999999997764311 11 223333322 2455654221 1
Q ss_pred CCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCC
Q 015614 132 LDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVP 182 (403)
Q Consensus 132 ~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p 182 (403)
-+...|. +-..+.++...+.|.|++.+....++.+......+........
T Consensus 84 ~~~~~p~-~~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~ 133 (275)
T cd07937 84 GYRHYPD-DVVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKH 133 (275)
T ss_pred CccCCCc-HHHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCe
Confidence 1222332 2356677888889999999999888877777676666555543
No 423
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=75.38 E-value=5.8 Score=35.43 Aligned_cols=110 Identities=17% Similarity=0.225 Sum_probs=68.8
Q ss_pred eEEeeeccCCcccCCHHHHHHHHHhc--CCCceEeecCcccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHHhh
Q 015614 239 KVFGLISKPVGHSKGPILHNPTFRHV--NYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA 316 (403)
Q Consensus 239 ~~~~liG~pi~hS~SP~ihn~~~~~~--gl~~~y~~~~~~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~ 316 (403)
|+.++.|+|-..|.|-.+-+.+.+.+ .-++....+++.++.- . +....+.+ ..-|.+.+..+.
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~~idL~~~~~--~-~~~~~~~~------------~~~~~~~~~~~~ 65 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPRTIDLADLAP--S-LGGALWRS------------QLPPDAERILQA 65 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEhhhcCh--h-hccccccC------------CCCHHHHHHHHH
Confidence 46789999999999999888887754 2234455555433210 0 10011111 122455677788
Q ss_pred ccceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhH
Q 015614 317 IAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA 379 (403)
Q Consensus 317 igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGa 379 (403)
+-+++.|++-.+. ||-...|.++.+-+.+. ...+.+|+++++++||.
T Consensus 66 i~~AD~iIi~tP~-----Y~~s~~~~LKn~lD~~~-----------~~~l~~K~~~~v~~~g~ 112 (174)
T TIGR03566 66 IESADLLVVGSPV-----YRGSYTGLFKHLFDLVD-----------PNALIGKPVLLAATGGS 112 (174)
T ss_pred HHHCCEEEEECCc-----CcCcCcHHHHHHHHhcC-----------HhHhCCCEEEEEEecCC
Confidence 8889998876222 67777888887655432 12467899999998765
No 424
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=75.33 E-value=3.7 Score=47.05 Aligned_cols=34 Identities=38% Similarity=0.467 Sum_probs=30.6
Q ss_pred CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.+.++|||+|-|+.+++..+++.|.+|+|+.++.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~ 196 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQP 196 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3679999999999999999999999999998753
No 425
>PRK13748 putative mercuric reductase; Provisional
Probab=75.28 E-value=3.7 Score=43.67 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=29.7
Q ss_pred CeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
..++|||+|.+|.+++..|+++|.+|.|+.|.
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 57999999999999999999999999999875
No 426
>PLN02827 Alcohol dehydrogenase-like
Probab=75.28 E-value=3.2 Score=41.87 Aligned_cols=35 Identities=40% Similarity=0.581 Sum_probs=29.5
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~ 401 (403)
.+++++|.|+|+.+.+++..++.+|+ .|+++.++.
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~ 228 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINP 228 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH
Confidence 47899999999999999998888998 577776553
No 427
>PLN02342 ornithine carbamoyltransferase
Probab=75.18 E-value=97 Score=31.24 Aligned_cols=186 Identities=13% Similarity=0.055 Sum_probs=113.6
Q ss_pred EEEcCccchhhhhhcCCCCCcccccccCCCCC------CCCCCHHHHHhhhhh----cc----------ccccceEEeee
Q 015614 185 AYSVGERGLVSQLLSPKFNGALVYGSLKGTPV------LGLPTVESLRQTYKV----EH----------INADTKVFGLI 244 (403)
Q Consensus 185 ~~~MG~~G~~SRil~~~~gs~lty~~~~~~sA------pGQ~~~~~l~~~~~~----~~----------~~~~~~~~~li 244 (403)
+++.....+-+|+.+..+|+.-++.++..... -.|++-+++..+++. .. ........-+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lsi~dls~~ei~~ll~~A~~lk~~~~~~~~~~~~L~gk~va~lF 92 (348)
T PLN02342 13 AVSSSSRARRGLVVCAASSSAAAPSPIKGKSKPKHFLHIDDFDKEEILGLLDRAKEVKALLKSGDRSFQPFKGKSMAMIF 92 (348)
T ss_pred cccchhHHHHhhhHhhhhcCCCCcccccCCCCCCCccchhhCCHHHHHHHHHHHHHHHhhhhcCccccccCCCCEEEEEe
Confidence 44555566778888888888877665544322 245677777777652 11 01112233355
Q ss_pred ccCCcccCCHHHHHHHHHhcCCCceEeecCc------ccHHHHHHHhcCCCCceEEecccchHHHHcccccCCHHHhhcc
Q 015614 245 SKPVGHSKGPILHNPTFRHVNYNGIYVPMFV------DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIA 318 (403)
Q Consensus 245 G~pi~hS~SP~ihn~~~~~~gl~~~y~~~~~------~~~~~~~~~~~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~ig 318 (403)
=.|-. |+-.=+..+.++||-...|..... +.+.+....+... +.++-+=.|-...+..+. +..+
T Consensus 93 ~epST--RTR~SFE~A~~~LGg~~i~l~~~~ss~~kGESl~DTarvLs~y-~D~IviR~~~~~~~~~la-------~~~~ 162 (348)
T PLN02342 93 TKPSM--RTRVSFETGFFLLGGHALYLGPDDIQLGKREETRDIARVLSRY-NDIIMARVFAHQDVLDLA-------EYSS 162 (348)
T ss_pred cCCCc--chHHHHHHHHHHcCCcEEEeCcccccCCCCcCHHHHHHHHHHh-CCEEEEeCCChHHHHHHH-------HhCC
Confidence 56644 455556889999999888764322 4677777766443 667766666444332222 2211
Q ss_pred ceeEEEEeccCCeEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEE
Q 015614 319 AVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIF 397 (403)
Q Consensus 319 avNTi~~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGa-GGaarai~~al~~~g~~i~v~ 397 (403)
| -|++- .++ ..|=|=...=+.++.+..+ .++|.+++++|- .-++++.+.++..+|++|+++
T Consensus 163 -v-PVINA-~~~--~~HPtQaLaDl~Ti~e~~G-------------~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~ 224 (348)
T PLN02342 163 -V-PVING-LTD--YNHPCQIMADALTIIEHIG-------------RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCA 224 (348)
T ss_pred -C-CEEEC-CCC--CCChHHHHHHHHHHHHHhC-------------CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEE
Confidence 1 34443 122 2466666665566654432 367899999996 457999999999999998887
Q ss_pred e
Q 015614 398 D 398 (403)
Q Consensus 398 n 398 (403)
.
T Consensus 225 ~ 225 (348)
T PLN02342 225 C 225 (348)
T ss_pred C
Confidence 5
No 428
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=75.08 E-value=38 Score=33.06 Aligned_cols=39 Identities=28% Similarity=0.476 Sum_probs=28.8
Q ss_pred chHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEE
Q 015614 53 GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVD 103 (403)
Q Consensus 53 ~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvD 103 (403)
.+.+..+++..++|+|--+|.- ++.=.+.+...|+||||
T Consensus 56 p~~I~~I~~~V~iPVig~~kig------------h~~Ea~~L~~~GvDiID 94 (287)
T TIGR00343 56 PKMIKEIMDAVSIPVMAKVRIG------------HFVEAQILEALGVDYID 94 (287)
T ss_pred HHHHHHHHHhCCCCEEEEeecc------------HHHHHHHHHHcCCCEEE
Confidence 3678888888999999888842 13333455678999999
No 429
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=75.00 E-value=3.4 Score=41.25 Aligned_cols=36 Identities=33% Similarity=0.518 Sum_probs=30.6
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFG 402 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~ 402 (403)
.+.+++|+|+|+.+.+++..++.+|+ +|+++.++.+
T Consensus 184 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~ 220 (365)
T cd08277 184 PGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINED 220 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence 47899999999999999888888999 7888877643
No 430
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=75.00 E-value=3.3 Score=40.39 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=28.7
Q ss_pred CCCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.|.+++|.| +|+.+.+++..++..|++|+.+.++.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~ 173 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSD 173 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 478999999 58899999888888899877776653
No 431
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=74.93 E-value=3.3 Score=40.15 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=29.2
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
.+.+++|.|+|+.+.+++..++.+|++|+++.++
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~ 188 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRH 188 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCC
Confidence 4689999999999999999899999987776654
No 432
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=74.76 E-value=65 Score=33.64 Aligned_cols=158 Identities=19% Similarity=0.218 Sum_probs=87.4
Q ss_pred CCCeeEEEecccC-CHHHHHHHHHHH-----HhcC----CCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCC
Q 015614 8 KNTTMICAPLMAQ-SVEQVLSNMYQA-----KAEG----ADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAG 77 (403)
Q Consensus 8 ~~~~~icv~l~~~-~~~e~~~~~~~~-----~~~~----~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eG 77 (403)
.|+|.|++-|... +.+++...++.. ...| +|+|=||...-....-...++.+++..+.|+++--
T Consensus 89 ~np~~Ia~eI~D~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~dp~~v~~~Vk~V~~~~dvPLSIDT------ 162 (450)
T PRK04165 89 FNPTGIAVDVSDTMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASGDPEKFAKAVKKVAETTDLPLILCS------ 162 (450)
T ss_pred CCCCEEEEEEeCCCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEeC------
Confidence 3678888888332 235565555555 3455 99999988754221112345556555688976542
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEE-EEeccccchHHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCC
Q 015614 78 GLYEGDEHKRLEALHLAEDLGADYV-DFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGAD 155 (403)
Q Consensus 78 G~~~~~~~~~~~ll~~~~~~g~~yv-DiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gad 155 (403)
..-+.++++++.+++.. ||=--..+ -.+.+. .....+..+|++. . +.+.+.++.+++.+.|-
T Consensus 163 --------~dpevleaAleagad~~plI~Sat~d-N~~~m~~la~~yg~pvVv~~-~-----dl~~L~~lv~~~~~~GI- 226 (450)
T PRK04165 163 --------EDPAVLKAALEVVADRKPLLYAATKE-NYEEMAELAKEYNCPLVVKA-P-----NLEELKELVEKLQAAGI- 226 (450)
T ss_pred --------CCHHHHHHHHHhcCCCCceEEecCcc-hHHHHHHHHHHcCCcEEEEc-h-----hHHHHHHHHHHHHHcCC-
Confidence 12246677777775521 22111112 112222 1223466777753 2 16778899999999885
Q ss_pred EEEEEeecC------CHhHHHHHHHH-----hccCCCCEEEEEc
Q 015614 156 IIKLVFSVN------DITEIARIFQL-----LSHCQVPIIAYSV 188 (403)
Q Consensus 156 ivKia~~~~------~~~D~~~ll~~-----~~~~~~p~i~~~M 188 (403)
-+++.-|- +.++..++-++ ....+.|+++...
T Consensus 227 -~dIILDPg~ggf~ksl~~~~~iRr~Al~~~~~~lgyPil~~~s 269 (450)
T PRK04165 227 -KDLVLDPGTENIKETLDDFVQIRRAAIKKGDRPLGYPIIAFPI 269 (450)
T ss_pred -CcEEECCCCchhhhhHHHHHHHHhhhhhcccccCCCCEEEcch
Confidence 57776663 34443333332 1223789887544
No 433
>PRK08227 autoinducer 2 aldolase; Validated
Probab=74.72 E-value=66 Score=31.14 Aligned_cols=122 Identities=14% Similarity=0.144 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHH---h---cCCCcEEEEeecCCCCCCCCCCHHHHHHH-HHHH
Q 015614 22 VEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL---T---KKPLPVLIVYRPKWAGGLYEGDEHKRLEA-LHLA 94 (403)
Q Consensus 22 ~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~---~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~l-l~~~ 94 (403)
.+.+...+++++..|||+|=+-+-.=.+.+ .+++..+. + ...+|+|. +. ..|.... ++...+.. -..+
T Consensus 93 ~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E-~~~l~~l~~v~~ea~~~G~Plla-~~--prG~~~~-~~~~~ia~aaRia 167 (264)
T PRK08227 93 NEAVAVDMEDAVRLNACAVAAQVFIGSEYE-HQSIKNIIQLVDAGLRYGMPVMA-VT--AVGKDMV-RDARYFSLATRIA 167 (264)
T ss_pred cccceecHHHHHHCCCCEEEEEEecCCHHH-HHHHHHHHHHHHHHHHhCCcEEE-Ee--cCCCCcC-chHHHHHHHHHHH
Confidence 355566678888999999999887654333 23444443 2 35899998 43 3344433 23333333 3356
Q ss_pred HHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCC
Q 015614 95 EDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGAD 155 (403)
Q Consensus 95 ~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gad 155 (403)
.++|+|.|=+.+.- +-++++.. ...+.|+++== .++ +.+++.+..+.+.+.||.
T Consensus 168 aELGADiVK~~y~~--~~f~~vv~--a~~vPVviaGG--~k~-~~~~~L~~v~~ai~aGa~ 221 (264)
T PRK08227 168 AEMGAQIIKTYYVE--EGFERITA--GCPVPIVIAGG--KKL-PERDALEMCYQAIDEGAS 221 (264)
T ss_pred HHHcCCEEecCCCH--HHHHHHHH--cCCCcEEEeCC--CCC-CHHHHHHHHHHHHHcCCc
Confidence 78899998888753 44556654 35678887632 233 456777777777777863
No 434
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=74.69 E-value=7.6 Score=39.76 Aligned_cols=53 Identities=28% Similarity=0.329 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 339 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
+.|...+.+..+... +..++|++|.|=|.|-+|+-++.-|.++|++|+.++-+
T Consensus 187 g~Gv~~~~~~a~~~~---------g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds 239 (411)
T COG0334 187 GYGVFYAIREALKAL---------GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDS 239 (411)
T ss_pred ceehHHHHHHHHHHc---------CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcC
Confidence 346666666544422 24488999999999999999999999999988776643
No 435
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=74.67 E-value=3.4 Score=39.05 Aligned_cols=35 Identities=40% Similarity=0.363 Sum_probs=30.1
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCe-EEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~-i~v~nR~~ 401 (403)
++.+++|.|+|+.+.+++..+..+|++ |+++.++.
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~ 132 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDA 132 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCH
Confidence 578999999999999999988899996 88887654
No 436
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=74.53 E-value=76 Score=29.76 Aligned_cols=139 Identities=14% Similarity=0.081 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHH---hcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHH
Q 015614 20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAED 96 (403)
Q Consensus 20 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~ 96 (403)
.+.+++.+..+++.+.++..|=+.-. .+...+ +.+++.+. |+=.-+.|.. .-+.+..-.+.+++
T Consensus 19 ~t~~~i~~~~~~A~~~~~~avcv~p~---------~v~~a~~~l~~~~v~v~-tVigFP~G~~---~~~~K~~e~~~Ai~ 85 (221)
T PRK00507 19 ATEEDIDKLCDEAKEYGFASVCVNPS---------YVKLAAELLKGSDVKVC-TVIGFPLGAN---TTAVKAFEAKDAIA 85 (221)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEECHH---------HHHHHHHHhCCCCCeEE-EEecccCCCC---hHHHHHHHHHHHHH
Confidence 44677888888887776666554221 333333 22344443 4444444433 23455556678889
Q ss_pred cCCcEEEEeccccc-------hHHHHH---Hhc-cCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEee---
Q 015614 97 LGADYVDFELKVAS-------NILGKQ---YSS-HQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFS--- 162 (403)
Q Consensus 97 ~g~~yvDiEl~~~~-------~~~~~l---~~~-~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~--- 162 (403)
.|++-+|+=++... ...+++ ... ++.-.|+|+---+. +.+++....+.+.+.|+|++|--+.
T Consensus 86 ~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L----~~e~i~~a~~~~~~agadfIKTsTG~~~ 161 (221)
T PRK00507 86 NGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLL----TDEEKVKACEIAKEAGADFVKTSTGFST 161 (221)
T ss_pred cCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcC----CHHHHHHHHHHHHHhCCCEEEcCCCCCC
Confidence 99999997554421 122222 222 23457888764432 4567888888888889998887543
Q ss_pred -cCCHhHHHHHHHH
Q 015614 163 -VNDITEIARIFQL 175 (403)
Q Consensus 163 -~~~~~D~~~ll~~ 175 (403)
..+.+|+..+.+.
T Consensus 162 ~gat~~~v~~m~~~ 175 (221)
T PRK00507 162 GGATVEDVKLMRET 175 (221)
T ss_pred CCCCHHHHHHHHHH
Confidence 2456666555544
No 437
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=74.51 E-value=5 Score=32.94 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=25.0
Q ss_pred eEEEEcchhHHHHHHHHHHHCC-C-eEEEEecC
Q 015614 370 MFVLAGAGGAGRALAFGAKSRG-A-RVVIFDID 400 (403)
Q Consensus 370 ~~lilGaGGaarai~~al~~~g-~-~i~v~nR~ 400 (403)
++||+|+||---|++++|.+-- + +||++--+
T Consensus 2 kVLviGsGgREHAia~~l~~s~~v~~v~~aPGN 34 (100)
T PF02844_consen 2 KVLVIGSGGREHAIAWKLSQSPSVEEVYVAPGN 34 (100)
T ss_dssp EEEEEESSHHHHHHHHHHTTCTTEEEEEEEE--
T ss_pred EEEEECCCHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 6999999999999999998653 5 78887543
No 438
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=74.50 E-value=3 Score=46.26 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=31.7
Q ss_pred CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
-+++.|||||-+|..|++.++..|++|++++++++
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 46899999999999999999999999999998753
No 439
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=74.40 E-value=3.9 Score=40.16 Aligned_cols=35 Identities=37% Similarity=0.564 Sum_probs=30.2
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.+++++|.|+|+.+.+++..++.+|++|+++.++.
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~ 199 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDD 199 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 47899999999999999999999999887776654
No 440
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=74.34 E-value=4.2 Score=39.33 Aligned_cols=35 Identities=23% Similarity=0.165 Sum_probs=29.8
Q ss_pred CCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCCC
Q 015614 368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFG 402 (403)
Q Consensus 368 ~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~~ 402 (403)
+++++|.|+ |+.+.+++..++..|++|+++.++.+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~ 182 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKAD 182 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHH
Confidence 579999998 99999999888899998888777643
No 441
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=74.23 E-value=3.6 Score=39.46 Aligned_cols=35 Identities=34% Similarity=0.382 Sum_probs=30.3
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCe-EEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~-i~v~nR~~ 401 (403)
.+.+++|.|+|+.+.+++..++.+|++ |+++.++.
T Consensus 129 ~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~ 164 (312)
T cd08269 129 AGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRP 164 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence 478999999999999999888899996 88888764
No 442
>PLN02815 L-aspartate oxidase
Probab=74.20 E-value=3.8 Score=44.28 Aligned_cols=31 Identities=32% Similarity=0.418 Sum_probs=27.0
Q ss_pred CeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
..|||+|+|+||.+++..+++.| +|.|+...
T Consensus 30 ~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~ 60 (594)
T PLN02815 30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKD 60 (594)
T ss_pred cCEEEECccHHHHHHHHHHhhCC-CEEEEECC
Confidence 46999999999999999999999 88887754
No 443
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=74.20 E-value=3.2 Score=45.78 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=31.0
Q ss_pred CCeEEEEcchhHHHHHHHHHH-HCCCeEEEEecCCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDFG 402 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~-~~g~~i~v~nR~~~ 402 (403)
-+++.|||||-+|+.|++.++ ..|++|++++++++
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~ 344 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ 344 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence 478999999999999999998 77999999998743
No 444
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.19 E-value=4 Score=40.50 Aligned_cols=35 Identities=37% Similarity=0.439 Sum_probs=30.7
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~ 401 (403)
.|.++||+|||..+.....+++..|+ +|.+++-.+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~ 204 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVA 204 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCH
Confidence 57899999999999999999999999 898877543
No 445
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=74.06 E-value=4 Score=43.17 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=28.1
Q ss_pred CCeEEEEcchhHHHHHHHHHHHCCCeEEEEe
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFD 398 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~g~~i~v~n 398 (403)
...++|+|+|.+|-+++..|++.|.+++|+.
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~ 242 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVA 242 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence 4689999999999999999999999888775
No 446
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=73.88 E-value=28 Score=33.45 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=57.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCcEEEE--ecccc-------chHHHHH---HhccCCCcEEEEeccCCCCCCCHhHH
Q 015614 75 WAGGLYEGDEHKRLEALHLAEDLGADYVDF--ELKVA-------SNILGKQ---YSSHQSGTRFIVSCNLDCETPSEEDL 142 (403)
Q Consensus 75 ~eGG~~~~~~~~~~~ll~~~~~~g~~yvDi--El~~~-------~~~~~~l---~~~~~~~~kiI~S~H~f~~tp~~~~l 142 (403)
.+||.+ .+.+.-++..+..++.|+++||| |-..+ ++..+++ +...+...++.+|.= |++.+.+
T Consensus 15 ~dg~~~-~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSID----T~~~~v~ 89 (257)
T cd00739 15 SDGGRF-LSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVD----TFRAEVA 89 (257)
T ss_pred CCCCCC-CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEe----CCCHHHH
Confidence 678876 34555555566667899999999 33322 1122222 211123335667753 4444344
Q ss_pred HHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEc
Q 015614 143 GYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSV 188 (403)
Q Consensus 143 ~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~M 188 (403)
+++.+.|+|++-=+..-+ .| .+++.+..+.+.++|++.+
T Consensus 90 ----e~al~~G~~iINdisg~~--~~-~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 90 ----RAALEAGADIINDVSGGS--DD-PAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred ----HHHHHhCCCEEEeCCCCC--CC-hHHHHHHHHcCCCEEEECC
Confidence 344445888765332221 12 4556666777889999877
No 447
>PLN02612 phytoene desaturase
Probab=73.86 E-value=5.2 Score=42.92 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=31.6
Q ss_pred CCCCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 365 ~~~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
+.++++++|+|+|-++.++++.|.+.|.+++|+.+.
T Consensus 90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~ 125 (567)
T PLN02612 90 PAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEAR 125 (567)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecC
Confidence 345678999999999999999999999998888764
No 448
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=73.76 E-value=5.1 Score=41.67 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=30.8
Q ss_pred CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.++++|+|+|-+|-.++..|.++|.+|+++.|..
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 4799999999999999999999999999998753
No 449
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=73.76 E-value=3.7 Score=41.26 Aligned_cols=35 Identities=34% Similarity=0.632 Sum_probs=30.6
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~ 401 (403)
.+.+++|+|+|+.+.+++..+..+|+ +|+++.|+.
T Consensus 190 ~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~ 225 (373)
T cd08299 190 PGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINK 225 (373)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 47899999999999999999999999 888887754
No 450
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=73.70 E-value=4 Score=39.90 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=29.9
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCC-CeEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g-~~i~v~nR~~ 401 (403)
.+++++|.|+|+.+.+++..++.+| .+|+.+.++.
T Consensus 167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~ 202 (340)
T cd05284 167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSE 202 (340)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 4789999999999999999888999 6888777754
No 451
>PRK07589 ornithine cyclodeaminase; Validated
Probab=73.66 E-value=3.4 Score=41.54 Aligned_cols=36 Identities=28% Similarity=0.465 Sum_probs=30.5
Q ss_pred CCeEEEEcchhHHHHHHHHHHHC-CC-eEEEEecCCCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFGT 403 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~-g~-~i~v~nR~~~k 403 (403)
-++++|+|+|.-|+.-+.++... .. +|+|+||++++
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~ 166 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAA 166 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHH
Confidence 47899999999999999888765 46 89999999753
No 452
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=73.60 E-value=3.8 Score=40.43 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=30.5
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~ 401 (403)
.+++++|.|+|+.+.+++..++.+|+ +|+++.++.
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~ 207 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSE 207 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 47899999999999999998999999 888887654
No 453
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=73.47 E-value=4.4 Score=45.25 Aligned_cols=34 Identities=32% Similarity=0.297 Sum_probs=30.3
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
..++|+|+|||-+|.++++.|.+.|.+|+|+..+
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~ 270 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGR 270 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecc
Confidence 4578999999999999999999999998888754
No 454
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=73.46 E-value=4.1 Score=39.51 Aligned_cols=35 Identities=31% Similarity=0.374 Sum_probs=28.9
Q ss_pred CCCeEEEEc-chhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilG-aGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.|.+++|.| +|+.+.+++..++.+|++|+.+.++.
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~ 178 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSD 178 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 478999999 58999998888888999887776654
No 455
>PLN02507 glutathione reductase
Probab=73.38 E-value=4.3 Score=42.80 Aligned_cols=31 Identities=29% Similarity=0.314 Sum_probs=28.9
Q ss_pred CeEEEEcchhHHHHHHHHHHHCCCeEEEEec
Q 015614 369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDI 399 (403)
Q Consensus 369 ~~~lilGaGGaarai~~al~~~g~~i~v~nR 399 (403)
..++|||+|.+|.+++..+.++|.+|.|+.+
T Consensus 26 yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 26 FDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 4599999999999999999999999999986
No 456
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=73.38 E-value=4.2 Score=40.54 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=29.3
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.+.+++|.|+|+.+.+++..++..|++++++.++.
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~ 214 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSD 214 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 47899999999999999988888999777666543
No 457
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=73.30 E-value=77 Score=29.25 Aligned_cols=95 Identities=11% Similarity=0.048 Sum_probs=64.2
Q ss_pred EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHH
Q 015614 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALH 92 (403)
Q Consensus 13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~ 92 (403)
+|+.+-.++.++.++.+++. ...+|++|+-+|++..... +.+..+++.. .|+++=+... +-|. ..+. ..+
T Consensus 1 ~ivAlD~~~~~~a~~~~~~~-~~~v~~iKig~~l~~~~G~-~~v~~l~~~~-~~v~lD~K~~-Dig~---t~~~---~~~ 70 (213)
T TIGR01740 1 LIVALDVTTKDEALDLADSL-GPEIEVIKVGIDLLLDGGD-KIIDELAKLN-KLIFLDLKFA-DIPN---TVKL---QYE 70 (213)
T ss_pred CEEECCCCCHHHHHHHHHhc-CCcCcEEEECHHHHHhcCH-HHHHHHHHcC-CCEEEEEeec-chHH---HHHH---HHH
Confidence 58899999999999888775 3338999999999986543 4677776644 4666665542 1111 1222 344
Q ss_pred HHHHcCCcEEEEeccccchHHHHHH
Q 015614 93 LAEDLGADYVDFELKVASNILGKQY 117 (403)
Q Consensus 93 ~~~~~g~~yvDiEl~~~~~~~~~l~ 117 (403)
.++++|++++-+=.....+-++.+.
T Consensus 71 ~~~~~gad~vTvh~~~g~~~l~~~~ 95 (213)
T TIGR01740 71 SKIKQGADMVNVHGVAGSESVEAAK 95 (213)
T ss_pred HHHhcCCCEEEEcCCCCHHHHHHHH
Confidence 5678999999998777666555544
No 458
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=73.23 E-value=4.2 Score=43.73 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=27.6
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEE
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIF 397 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~ 397 (403)
+..+|+|+|.||.+..+++.|...|+ +|..+
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~v 159 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAI 159 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCCCcEEEE
Confidence 46789999999999999999999998 77555
No 459
>PLN02444 HMP-P synthase
Probab=73.22 E-value=21 Score=37.94 Aligned_cols=131 Identities=21% Similarity=0.121 Sum_probs=81.0
Q ss_pred EecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEee-----cCCCCCCCCCCHHHHHH
Q 015614 15 APLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYR-----PKWAGGLYEGDEHKRLE 89 (403)
Q Consensus 15 v~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R-----~~~eGG~~~~~~~~~~~ 89 (403)
.|-..+++++-+..+..+...|||.| +|+-..-+..+.-..+++++++||= |+- .+..|...+.+++..++
T Consensus 229 tS~~~s~ie~EveK~~~A~~~GADTv---MDLSTGgdi~~iR~~Il~~spvPVG-TVPIYqA~~~~~~~~~~lt~d~~~d 304 (642)
T PLN02444 229 NSAVTSSIEEEVYKLQWATMWGADTV---MDLSTGRHIHETREWILRNSPVPVG-TVPIYQALEKVDGIAENLTWEVFRE 304 (642)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCeE---eeccCCCCHHHHHHHHHHcCCCCcc-CccHHHHHHHhcCChhhCCHHHHHH
Confidence 34455667777777888899999987 4766544322212234455566542 221 11223445678999999
Q ss_pred HHHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEec----------cCCCCCCCHhHHHHHHHHHHHcC
Q 015614 90 ALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSC----------NLDCETPSEEDLGYLVSRMQATG 153 (403)
Q Consensus 90 ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~----------H~f~~tp~~~~l~~~~~~~~~~g 153 (403)
.++.=++-|+||+-|--....+.++.+. +..-=|+|. |+-++.|=.+...++++-++++.
T Consensus 305 ~ieeQaeqGVDfmTIH~Gv~~~~v~~~~----~R~tgIVSRGGSi~a~Wml~~~kENPlYe~FD~ileI~k~YD 374 (642)
T PLN02444 305 TLIEQAEQGVDYFTIHAGVLLRYIPLTA----KRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQYD 374 (642)
T ss_pred HHHHHHHhCCCEEEEChhhHHHHHHHHh----CcccCceeCCcHHHHHHHHHcCCcCchHHHHHHHHHHHHHhC
Confidence 9999999999999987666554444332 233335553 44567775566666666666654
No 460
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=73.07 E-value=5.9 Score=37.73 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=30.6
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.+++++|+|+|-+|--++..|.+.|.+|+++.|..
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 46899999999999999999998888999988753
No 461
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=73.00 E-value=20 Score=38.02 Aligned_cols=130 Identities=21% Similarity=0.129 Sum_probs=80.4
Q ss_pred ecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHHHhcCCCcEEEEee-----cCCCCCCCCCCHHHHHHH
Q 015614 16 PLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYR-----PKWAGGLYEGDEHKRLEA 90 (403)
Q Consensus 16 ~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R-----~~~eGG~~~~~~~~~~~l 90 (403)
|-..+++++-+..+..+...|||.| +|+-..-+..+.-..+++++++||= |+- .+..|...+.+++..++.
T Consensus 225 S~~~s~ieeEveK~~~A~~~GADtv---MDLSTGgdi~~~R~~Il~~spvPvG-TVPiYqA~~~~~~~~~~lt~e~~~d~ 300 (607)
T PRK09284 225 SAVTSSIEEEVEKMVWATRWGADTV---MDLSTGKNIHETREWILRNSPVPIG-TVPIYQALEKVNGVAEDLTWEIFRDT 300 (607)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEE---EecCCCCCHHHHHHHHHHcCCCCcc-CccHHHHHHHhcCChhhCCHHHHHHH
Confidence 4455667777777888899999987 4766554322222234455666653 222 112334456788999999
Q ss_pred HHHHHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEec----------cCCCCCCCHhHHHHHHHHHHHcC
Q 015614 91 LHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSC----------NLDCETPSEEDLGYLVSRMQATG 153 (403)
Q Consensus 91 l~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~----------H~f~~tp~~~~l~~~~~~~~~~g 153 (403)
++.=++-|+||+-|--....+.++.+. +...=|+|. |+-++.|=.+...++++-|+++.
T Consensus 301 ieeQAeqGVDf~TIHaGv~~~~v~~~~----~R~tgIVSRGGSima~Wml~h~kENplYe~FD~ileI~k~YD 369 (607)
T PRK09284 301 LIEQAEQGVDYFTIHAGVLLRYVPLTA----KRVTGIVSRGGSIMAKWCLAHHKENFLYTHFEEICEIMAAYD 369 (607)
T ss_pred HHHHHHhCCCEEEEChhhHHHHHHHHh----CcccCcccCCHHHHHHHHHHcCCcCcHHHHHHHHHHHHHHhC
Confidence 999999999999997666554444331 233335553 44567775555666666666653
No 462
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=72.91 E-value=5.2 Score=40.36 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=29.2
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
.+++++|.|+|+.+.+++..++.+|++|+++.++
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~ 211 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS 211 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC
Confidence 4789999999999999999888999987776654
No 463
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=72.80 E-value=5.8 Score=40.55 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=30.6
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.+++++|+|+|-+|-.++..|.+.|.+|+++.|..
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 170 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE 170 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 35799999999999999999999999999988753
No 464
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=72.74 E-value=5.8 Score=39.53 Aligned_cols=34 Identities=29% Similarity=0.306 Sum_probs=30.1
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~ 400 (403)
.+++++|+|+|-.|--++..|...|+ +|+|+.|.
T Consensus 171 ~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 171 EGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 47899999999999999999988999 59999874
No 465
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=72.70 E-value=5.5 Score=41.16 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=30.7
Q ss_pred CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.++++|+|+|.+|-.++..|.++|.+|+++.|..
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 203 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD 203 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 4789999999999999999999999999998853
No 466
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=72.69 E-value=4 Score=40.83 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=28.3
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC--eEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~--~i~v~nR~~ 401 (403)
.+++++|||+|-+|.-|+..|.+.+. +|+.+.|++
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 46899999999999999999988775 899999975
No 467
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=72.68 E-value=3.8 Score=45.13 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=30.6
Q ss_pred CCeEEEEcchhHHHHHHHHHH-HCCCeEEEEecCCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDFG 402 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~-~~g~~i~v~nR~~~ 402 (403)
-+++.|||||-+|+.|++.++ ..|++|++++++++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 368999999999999999988 57999999998753
No 468
>PRK13529 malate dehydrogenase; Provisional
Probab=72.62 E-value=8.6 Score=40.99 Aligned_cols=37 Identities=32% Similarity=0.506 Sum_probs=29.9
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHH----CCC-------eEEEEecC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKS----RGA-------RVVIFDID 400 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~----~g~-------~i~v~nR~ 400 (403)
.+++..+++++|||.|+-+|+.-|.+ .|. +|+++++.
T Consensus 291 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~ 338 (563)
T PRK13529 291 EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQ 338 (563)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCC
Confidence 45667899999999999888887765 676 68888874
No 469
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=72.28 E-value=6.1 Score=39.72 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=30.0
Q ss_pred CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~ 400 (403)
+++++|+|+|-.+--++..|.+.|.+|+++.|.
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~ 173 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNA 173 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecC
Confidence 578999999999999999999999999998875
No 470
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=72.11 E-value=5.6 Score=40.61 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=41.3
Q ss_pred eEEEEeccHHHHHHHHHHHHHhcCcCCCCCcCCCCCCCCeEEEEcc-hhHHHH--HHHHHHHCCCeEEEEec
Q 015614 331 KLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-GGAGRA--LAFGAKSRGARVVIFDI 399 (403)
Q Consensus 331 ~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lilGa-GGaara--i~~al~~~g~~i~v~nR 399 (403)
..+..|+--.|-.+..++...-....+ .....+|++||.|+ +|-++| ++.+| +.|+++.++.+
T Consensus 9 g~i~~~~hp~gc~~~v~~qi~~~~~~~-----~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~ 74 (398)
T PRK13656 9 GFICTTAHPVGCEANVKEQIEYVKAQG-----PIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFF 74 (398)
T ss_pred ceeECCCCCHHHHHHHHHHHHHHHhcC-----CcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEec
Confidence 356677777888777765432111000 11223689999995 788999 88899 89997766664
No 471
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=72.07 E-value=14 Score=39.32 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=34.3
Q ss_pred CCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhcc-----CCCCEEE
Q 015614 135 ETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH-----CQVPIIA 185 (403)
Q Consensus 135 ~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~-----~~~p~i~ 185 (403)
.|-+.+...+++.++.+.|||||++++.. .+|...+-....+ .+.|++|
T Consensus 40 ~T~D~~atv~Qi~~L~~aGceiVRvtvp~--~~~A~al~~I~~~L~~~g~~iPLVA 93 (606)
T PRK00694 40 ATTDVDGTVRQICALQEWGCDIVRVTVQG--LKEAQACEHIKERLIQQGISIPLVA 93 (606)
T ss_pred CcccHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHHHHhccCCCCCEEe
Confidence 34456778888999999999999999984 4444444444333 4678775
No 472
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=72.07 E-value=94 Score=29.73 Aligned_cols=103 Identities=15% Similarity=0.127 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeccc-----c-chHHHHH----HhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHH
Q 015614 82 GDEHKRLEALHLAEDLGADYVDFELKV-----A-SNILGKQ----YSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQA 151 (403)
Q Consensus 82 ~~~~~~~~ll~~~~~~g~~yvDiEl~~-----~-~~~~~~l----~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~ 151 (403)
.+.+...++++..++.|++.|-+=-.. . .+.++++ ....+++..||++.. .++.++..++.+.+++
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~----~~~~~~~i~~a~~a~~ 90 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG----ANSTREAIELARHAEE 90 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC----CccHHHHHHHHHHHHH
Confidence 344555555666666666665542111 1 1111122 122235677887753 4567889999999999
Q ss_pred cCCCEEEEEeecC---CHhHHHHHHHHhc-cCCCCEEEEEc
Q 015614 152 TGADIIKLVFSVN---DITEIARIFQLLS-HCQVPIIAYSV 188 (403)
Q Consensus 152 ~gadivKia~~~~---~~~D~~~ll~~~~-~~~~p~i~~~M 188 (403)
.|+|.+=+....- +.+++.+-++... ..+.|++.++.
T Consensus 91 ~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~ 131 (281)
T cd00408 91 AGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNI 131 (281)
T ss_pred cCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 9999887765433 4455555444443 35789988876
No 473
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=72.05 E-value=93 Score=29.66 Aligned_cols=147 Identities=16% Similarity=0.169 Sum_probs=85.4
Q ss_pred ccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC----CCch-------HHHHHHhcCCCcEEEEeecCCCCCCCCCCHHH
Q 015614 18 MAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF----QPGK-------DLEIILTKKPLPVLIVYRPKWAGGLYEGDEHK 86 (403)
Q Consensus 18 ~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~----~~~~-------~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~ 86 (403)
...+.++++..+.+..+.|||+|.+-...-.+. +..+ .++.+++..+.|+. +-| .
T Consensus 19 ~~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piS--IDT------------~ 84 (258)
T cd00423 19 KFLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPIS--VDT------------F 84 (258)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEE--EeC------------C
Confidence 345778888888888899999999988775322 1112 22333333466643 222 3
Q ss_pred HHHHHHHHHHcCCcEE-EEecccc-chHHHHHHhccCCCcEEEEeccCCCCCCC---------------HhHHHHHHHHH
Q 015614 87 RLEALHLAEDLGADYV-DFELKVA-SNILGKQYSSHQSGTRFIVSCNLDCETPS---------------EEDLGYLVSRM 149 (403)
Q Consensus 87 ~~~ll~~~~~~g~~yv-DiEl~~~-~~~~~~l~~~~~~~~kiI~S~H~f~~tp~---------------~~~l~~~~~~~ 149 (403)
+.+.++++++.|+++| |+..... ++..+ +.. ..+..+|+-+-+ ++|. .+.+.+.++++
T Consensus 85 ~~~v~~aaL~~g~~iINdis~~~~~~~~~~-l~~--~~~~~vV~m~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 159 (258)
T cd00423 85 NAEVAEAALKAGADIINDVSGGRGDPEMAP-LAA--EYGAPVVLMHMD--GTPQTMQNNPYYADVVDEVVEFLEERVEAA 159 (258)
T ss_pred cHHHHHHHHHhCCCEEEeCCCCCCChHHHH-HHH--HcCCCEEEECcC--CCCcccccCCCcchHHHHHHHHHHHHHHHH
Confidence 4568889999986654 4444332 23332 322 346677777532 2221 24466777888
Q ss_pred HHcCCCEEEEEeec-----CCHhHHHHHHHHh---ccC-CCCE
Q 015614 150 QATGADIIKLVFSV-----NDITEIARIFQLL---SHC-QVPI 183 (403)
Q Consensus 150 ~~~gadivKia~~~-----~~~~D~~~ll~~~---~~~-~~p~ 183 (403)
.+.|-+.=||..=| .+..++..+++.+ +.. +.|+
T Consensus 160 ~~~Gi~~~~IilDPg~g~~k~~~~~~~~l~~i~~~~~~~g~Pi 202 (258)
T cd00423 160 TEAGIPPEDIILDPGIGFGKTEEHNLELLRRLDAFRELPGLPL 202 (258)
T ss_pred HHcCCCHHHEEEeCCCCccCCHHHHHHHHHHHHHHHhcCCCcE
Confidence 88886555666543 3555666665554 333 5664
No 474
>PRK12861 malic enzyme; Reviewed
Probab=71.92 E-value=6.9 Score=43.37 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=32.0
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCC---eEEEEecC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDID 400 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~---~i~v~nR~ 400 (403)
.+++..++++.|||-||-+++..|...|+ +|++++|.
T Consensus 185 k~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~ 224 (764)
T PRK12861 185 KSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIE 224 (764)
T ss_pred CChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCC
Confidence 35667899999999999999999999998 69999863
No 475
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=71.75 E-value=65 Score=30.98 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=64.2
Q ss_pred cccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---chHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHH
Q 015614 17 LMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHL 93 (403)
Q Consensus 17 l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~ 93 (403)
+...|.+.++..+.+..+.|||+|.+-...-...+. ...+..+++..+.|+.+= | .+-+.+++
T Consensus 19 ~~~~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~~plsID--T------------~~~~v~ea 84 (261)
T PRK07535 19 IEAKDAAFIQKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVDVPLCID--S------------PNPAAIEA 84 (261)
T ss_pred HHcCCHHHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCCCCEEEe--C------------CCHHHHHH
Confidence 455677777877777788999999998874322111 123334444457776432 2 23356777
Q ss_pred HHHc--CCcE-EEEeccc--cchHHHHHHhccCCCcEEEEeccCCCCCCCH-----hHHHHHHHHHHHcC
Q 015614 94 AEDL--GADY-VDFELKV--ASNILGKQYSSHQSGTRFIVSCNLDCETPSE-----EDLGYLVSRMQATG 153 (403)
Q Consensus 94 ~~~~--g~~y-vDiEl~~--~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~-----~~l~~~~~~~~~~g 153 (403)
+++. |++. =||.... .++..+ +. ++.+..+|+-+.+..+.|.. +.+.+.++++.+.|
T Consensus 85 aL~~~~G~~iINsIs~~~~~~~~~~~-l~--~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~G 151 (261)
T PRK07535 85 GLKVAKGPPLINSVSAEGEKLEVVLP-LV--KKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYG 151 (261)
T ss_pred HHHhCCCCCEEEeCCCCCccCHHHHH-HH--HHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 8877 7554 3454432 222222 22 13455666644333556632 22344455555555
No 476
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=71.74 E-value=17 Score=36.12 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=47.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-----C-C-c---hHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHH
Q 015614 19 AQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-----Q-P-G---KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRL 88 (403)
Q Consensus 19 ~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-----~-~-~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~ 88 (403)
+.+.+++...++. .++|++|+.++..++. + + . ++++.+++..+.|+++-.. |. ..+ .
T Consensus 126 ~~~~~~~~~~i~~---~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~-----g~-g~s----~ 192 (326)
T cd02811 126 GYGVEEARRAVEM---IEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKEV-----GF-GIS----R 192 (326)
T ss_pred CCCHHHHHHHHHh---cCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEec-----CC-CCC----H
Confidence 4466777665544 3699999998764321 1 1 1 4677777778999997643 21 122 2
Q ss_pred HHHHHHHHcCCcEEEEe
Q 015614 89 EALHLAEDLGADYVDFE 105 (403)
Q Consensus 89 ~ll~~~~~~g~~yvDiE 105 (403)
+..+.+.+.|+++||+-
T Consensus 193 ~~a~~l~~~Gvd~I~vs 209 (326)
T cd02811 193 ETAKRLADAGVKAIDVA 209 (326)
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 44556678899999984
No 477
>PRK06370 mercuric reductase; Validated
Probab=71.66 E-value=6.3 Score=40.85 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=31.0
Q ss_pred CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
+++++|+|+|-.|--++..|.++|.+|+++.|..
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 204 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP 204 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 5799999999999999999999999999998864
No 478
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=71.52 E-value=32 Score=32.91 Aligned_cols=112 Identities=19% Similarity=0.178 Sum_probs=63.3
Q ss_pred EeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecccc---------chHHH---HHHhccCCCcEEEEeccCCCCCC
Q 015614 70 VYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVA---------SNILG---KQYSSHQSGTRFIVSCNLDCETP 137 (403)
Q Consensus 70 T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~---------~~~~~---~l~~~~~~~~kiI~S~H~f~~tp 137 (403)
|-.+-.+||.+ .+.+.-++..+..++.|+++|||=.... ++..+ .++.......++.+|.= |.
T Consensus 10 t~dsf~~~~~~-~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSID----T~ 84 (258)
T cd00423 10 TPDSFSDGGKF-LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVD----TF 84 (258)
T ss_pred CCCchhhcccc-CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEe----CC
Confidence 33455677776 3456666666777889999999965443 11111 12211123334556642 33
Q ss_pred CHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcCccch
Q 015614 138 SEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGL 193 (403)
Q Consensus 138 ~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~ 193 (403)
+.+ .++.+.+.|++++-=+..-+. | ..++++..+.+.|+|.+.|...|.
T Consensus 85 ~~~----v~~aaL~~g~~iINdis~~~~--~-~~~~~l~~~~~~~vV~m~~~~~~~ 133 (258)
T cd00423 85 NAE----VAEAALKAGADIINDVSGGRG--D-PEMAPLAAEYGAPVVLMHMDGTPQ 133 (258)
T ss_pred cHH----HHHHHHHhCCCEEEeCCCCCC--C-hHHHHHHHHcCCCEEEECcCCCCc
Confidence 333 344555567777554433221 1 455666667788999999876553
No 479
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=71.42 E-value=4.8 Score=38.84 Aligned_cols=35 Identities=34% Similarity=0.426 Sum_probs=29.8
Q ss_pred CCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.+.+++|.|+ |+.+++++..++..|++|+.+.|+.
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~ 197 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSP 197 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 4678999997 8889999999999999887777754
No 480
>PLN02852 ferredoxin-NADP+ reductase
Probab=71.41 E-value=6.1 Score=41.65 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=29.5
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHC--------------------CC-eEEEEecC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSR--------------------GA-RVVIFDID 400 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~--------------------g~-~i~v~nR~ 400 (403)
.+++++|+|+|-+|--++..|.+. |+ +|+|+.|.
T Consensus 165 ~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RR 219 (491)
T PLN02852 165 SSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRR 219 (491)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcC
Confidence 478999999999998888887766 88 79999985
No 481
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=71.39 E-value=99 Score=29.70 Aligned_cols=103 Identities=15% Similarity=0.135 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeccc------cchHHHHH----HhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHH
Q 015614 82 GDEHKRLEALHLAEDLGADYVDFELKV------ASNILGKQ----YSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQA 151 (403)
Q Consensus 82 ~~~~~~~~ll~~~~~~g~~yvDiEl~~------~~~~~~~l----~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~ 151 (403)
.+++...++++..++.|++.+-+==.. ..+.++++ ....+++..||+..- .++.++..++.+.+++
T Consensus 18 iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~----~~~~~~~~~~a~~a~~ 93 (284)
T cd00950 18 VDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG----SNNTAEAIELTKRAEK 93 (284)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC----CccHHHHHHHHHHHHH
Confidence 445555556666666666655542111 11111122 122234556665542 3467899999999999
Q ss_pred cCCCEEEEEeec---CCHhHHHHHHHHhc-cCCCCEEEEEc
Q 015614 152 TGADIIKLVFSV---NDITEIARIFQLLS-HCQVPIIAYSV 188 (403)
Q Consensus 152 ~gadivKia~~~---~~~~D~~~ll~~~~-~~~~p~i~~~M 188 (403)
.|+|.+=+.... .+.+++...++... ..+.|++.+++
T Consensus 94 ~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~ 134 (284)
T cd00950 94 AGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNV 134 (284)
T ss_pred cCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 999987766443 24455555554443 35889998876
No 482
>PRK10262 thioredoxin reductase; Provisional
Probab=71.38 E-value=6.8 Score=38.34 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=31.1
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.+++++|+|+|-.|--++..|.+.|.+|+++.|..
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 47899999999999999999999998999998753
No 483
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=71.25 E-value=96 Score=29.45 Aligned_cols=191 Identities=14% Similarity=0.089 Sum_probs=100.8
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCC----CchHHHHHHhcCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHH
Q 015614 20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQ----PGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAE 95 (403)
Q Consensus 20 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~----~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~ 95 (403)
.++.|+.+.+ ...|+|.+=+ +|+-.... ..+.+..+++....|+++. ||.... +. ++.++
T Consensus 30 ~dp~~~a~~~---~~~G~~~l~v-~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~------GGi~s~--~d----~~~~~ 93 (254)
T TIGR00735 30 GDPVELAQRY---DEEGADELVF-LDITASSEGRTTMIDVVERTAETVFIPLTVG------GGIKSI--ED----VDKLL 93 (254)
T ss_pred CCHHHHHHHH---HHcCCCEEEE-EcCCcccccChhhHHHHHHHHHhcCCCEEEE------CCCCCH--HH----HHHHH
Confidence 3666666555 4568887754 55543211 1245566777788999986 676433 22 23334
Q ss_pred HcCCcEEEEeccc--cchHHHHHHhccCCCcEEEEeccCCCCCC----------------CHhHHHHHHHHHHHcCCCEE
Q 015614 96 DLGADYVDFELKV--ASNILGKQYSSHQSGTRFIVSCNLDCETP----------------SEEDLGYLVSRMQATGADII 157 (403)
Q Consensus 96 ~~g~~yvDiEl~~--~~~~~~~l~~~~~~~~kiI~S~H~f~~tp----------------~~~~l~~~~~~~~~~gadiv 157 (403)
..|++.|-+=-.. ..++++++... -+.-+|++|.=.....+ +..+..+..+++.+.|+|.+
T Consensus 94 ~~Ga~~vivgt~~~~~p~~~~~~~~~-~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~i 172 (254)
T TIGR00735 94 RAGADKVSINTAAVKNPELIYELADR-FGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEI 172 (254)
T ss_pred HcCCCEEEEChhHhhChHHHHHHHHH-cCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEE
Confidence 5688988764333 33455555422 13357888874222211 23457788888899999977
Q ss_pred EEEeecCC----HhHHHHHHHHhccCCCCEEEEE-cCccchhhhhhcCCCCCcccccccCCCCCCCCCCHHHHHhhhh
Q 015614 158 KLVFSVND----ITEIARIFQLLSHCQVPIIAYS-VGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK 230 (403)
Q Consensus 158 Kia~~~~~----~~D~~~ll~~~~~~~~p~i~~~-MG~~G~~SRil~~~~gs~lty~~~~~~sApGQ~~~~~l~~~~~ 230 (403)
=+....+. .-|...+-++....+.|+|+.+ ....-.+.+++.. |. ..-+.+...---|.+++.++++..+
T Consensus 173 ivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~--g~-~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 173 LLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTK--GK-ADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred EEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHc--CC-cceeeEhHHHhCCCCCHHHHHHHHH
Confidence 66433331 1233333344444578887653 3333334444432 11 0001111111246677777776655
No 484
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=71.19 E-value=4.2 Score=40.41 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=29.8
Q ss_pred CCeEEEEcchhHHHHHHHHHHHC-CC-eEEEEecCCCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFGT 403 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~-g~-~i~v~nR~~~k 403 (403)
.+++.|+|+|..|++-+.++... .. +|+|++|+.++
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~ 165 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPST 165 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHH
Confidence 47899999999999988887654 35 89999998753
No 485
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=71.07 E-value=98 Score=29.51 Aligned_cols=145 Identities=19% Similarity=0.187 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEEec---------C-CCCCCCchHHHHHHhcC-CCcEEEEeecCCCCCCCCCCHHHHHHHH
Q 015614 23 EQVLSNMYQAKAEGADVVEIRLD---------C-INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEAL 91 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vElRlD---------~-l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll 91 (403)
++.+.-++...+.|+|.||+=.- . +...++.+.+..+++.. +.++.+-++. |.. +.+-+
T Consensus 22 ~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~----~~~------~~~~i 91 (263)
T cd07943 22 EQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLP----GIG------TVDDL 91 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecC----Ccc------CHHHH
Confidence 33333344445679999999521 1 11123445667775433 4555544432 111 12346
Q ss_pred HHHHHcCCcEEEEeccccc--hHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--CHh
Q 015614 92 HLAEDLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--DIT 167 (403)
Q Consensus 92 ~~~~~~g~~yvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~--~~~ 167 (403)
+++.+.|+++|-+-....+ ...+.+...+..+..+.++.-+... -+.+++.++.+++.+.|+|.+-++=+.- ++.
T Consensus 92 ~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~-~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~ 170 (263)
T cd07943 92 KMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHM-ASPEELAEQAKLMESYGADCVYVTDSAGAMLPD 170 (263)
T ss_pred HHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccC-CCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHH
Confidence 7888889999888655543 2222222334455566555433211 2357899999999999999987774443 578
Q ss_pred HHHHHHHHhcc
Q 015614 168 EIARIFQLLSH 178 (403)
Q Consensus 168 D~~~ll~~~~~ 178 (403)
++.++.+.+.+
T Consensus 171 ~v~~lv~~l~~ 181 (263)
T cd07943 171 DVRERVRALRE 181 (263)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 486
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=70.86 E-value=44 Score=31.10 Aligned_cols=79 Identities=23% Similarity=0.391 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecccc-ch---HHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCE
Q 015614 81 EGDEHKRLEALHLAEDLGADYVDFELKVA-SN---ILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADI 156 (403)
Q Consensus 81 ~~~~~~~~~ll~~~~~~g~~yvDiEl~~~-~~---~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadi 156 (403)
..+.++..++++.+.+.|+++|++-+... ++ .++.+.... ..+++. ++. .+..+++...++.+...|+|+
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~-~~~~~~-~~~----~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREAL-PNARLQ-ALC----RANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHH-HSSEEE-EEE----ESCHHHHHHHHHHHHHTTSSE
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhh-cccccc-eee----eehHHHHHHHHHhhHhccCCE
Confidence 35778999999999999999988874332 22 233343222 224442 332 134566777788888999999
Q ss_pred EEEEeecCC
Q 015614 157 IKLVFSVND 165 (403)
Q Consensus 157 vKia~~~~~ 165 (403)
+.+....++
T Consensus 84 i~i~~~~s~ 92 (237)
T PF00682_consen 84 IRIFISVSD 92 (237)
T ss_dssp EEEEEETSH
T ss_pred EEecCcccH
Confidence 999988877
No 487
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=70.72 E-value=30 Score=34.37 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=29.8
Q ss_pred cCCCcEEEEeecCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccc
Q 015614 62 KKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKV 108 (403)
Q Consensus 62 ~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~ 108 (403)
..+.|+|+.+- | .+.+++.++.+.+.+.|+|++++-+..
T Consensus 97 ~~~~pvi~si~-----g---~~~~~~~~~a~~~~~~gad~iElN~s~ 135 (325)
T cd04739 97 AVSIPVIASLN-----G---VSAGGWVDYARQIEEAGADALELNIYA 135 (325)
T ss_pred ccCCeEEEEeC-----C---CCHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 34789999982 2 245677888888888899999888875
No 488
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=70.71 E-value=30 Score=34.97 Aligned_cols=78 Identities=15% Similarity=0.124 Sum_probs=46.5
Q ss_pred HHHHHHhcCCCEEEEEecC------C-CCC----CC-------------chHHHHHHhcCCCcEEEEeecCCCC---CCC
Q 015614 28 NMYQAKAEGADVVEIRLDC------I-NNF----QP-------------GKDLEIILTKKPLPVLIVYRPKWAG---GLY 80 (403)
Q Consensus 28 ~~~~~~~~~~D~vElRlD~------l-~~~----~~-------------~~~l~~l~~~~~~PiI~T~R~~~eG---G~~ 80 (403)
-++.+.+.|.|.|||---. | .+. ++ .+.+..+|+...-.. +-+|-..++ +.-
T Consensus 164 AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~-igvRis~~~~~~~~~ 242 (362)
T PRK10605 164 AIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADR-IGIRISPLGTFNNVD 242 (362)
T ss_pred HHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCe-EEEEECCccccccCC
Confidence 3445577999999996543 1 111 11 155666776554333 677844321 111
Q ss_pred C-CCHHH-HHHHHHHHHHcCCcEEEEec
Q 015614 81 E-GDEHK-RLEALHLAEDLGADYVDFEL 106 (403)
Q Consensus 81 ~-~~~~~-~~~ll~~~~~~g~~yvDiEl 106 (403)
. .+.++ ..++++.+.+.|+|||+|-.
T Consensus 243 ~G~~~~e~~~~~~~~L~~~giD~i~vs~ 270 (362)
T PRK10605 243 NGPNEEADALYLIEQLGKRGIAYLHMSE 270 (362)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEecc
Confidence 1 24455 78888888888999999853
No 489
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=70.71 E-value=6 Score=39.56 Aligned_cols=37 Identities=38% Similarity=0.585 Sum_probs=32.4
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCC-eEEEEecCCCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFGT 403 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~-~i~v~nR~~~k 403 (403)
.|.++.|+|-||.+.|++..++..|+ +|.-++.+++|
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~K 222 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEK 222 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHH
Confidence 47899999999999999999999999 88877776554
No 490
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=70.61 E-value=1.1e+02 Score=29.77 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=42.7
Q ss_pred CCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec---CCHhHHHHHHHHhc-cCCCCEEEEE
Q 015614 121 QSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV---NDITEIARIFQLLS-HCQVPIIAYS 187 (403)
Q Consensus 121 ~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~---~~~~D~~~ll~~~~-~~~~p~i~~~ 187 (403)
+++..||++.- . +..+..+..+.+++.|+|.+=+.... .+.+.+.+.++... ..+.|++.++
T Consensus 67 ~~~~pvi~gv~----~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn 132 (289)
T cd00951 67 AGRVPVLAGAG----Y-GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYN 132 (289)
T ss_pred CCCCCEEEecC----C-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 46677888753 2 56788999999999999998554332 23455555554443 4579999987
No 491
>PLN02712 arogenate dehydrogenase
Probab=70.59 E-value=8 Score=42.41 Aligned_cols=35 Identities=23% Similarity=0.196 Sum_probs=31.4
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
+.+++.|||.|..|++++.+|.+.|.+|++++|+.
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~ 85 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD 85 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34689999999999999999999999999999863
No 492
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=70.55 E-value=5 Score=39.26 Aligned_cols=35 Identities=46% Similarity=0.656 Sum_probs=29.3
Q ss_pred CCCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.+++++|.|+|+.+.+++..+..+|++++++.++.
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~ 193 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDD 193 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCH
Confidence 46799999999899999888888999887776653
No 493
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=70.51 E-value=5.1 Score=38.02 Aligned_cols=35 Identities=34% Similarity=0.384 Sum_probs=29.8
Q ss_pred CCCeEEEEcc-hhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 367 ~~~~~lilGa-GGaarai~~al~~~g~~i~v~nR~~ 401 (403)
++++++|.|+ |+.+++++..++..|++|+++.++.
T Consensus 139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~ 174 (323)
T cd05276 139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSE 174 (323)
T ss_pred CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCH
Confidence 4789999996 7889999999999999888877753
No 494
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=70.27 E-value=95 Score=29.04 Aligned_cols=80 Identities=18% Similarity=0.239 Sum_probs=51.1
Q ss_pred EEEecccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-----CC-chHHHHHHhc-CCCcEEEEeecCCCCCCCCCCHH
Q 015614 13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-----QP-GKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEH 85 (403)
Q Consensus 13 icv~l~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-----~~-~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~ 85 (403)
|+.||..-|...+.+++++..+.|+|.+= +|.++.. .- .+.++.+|+. +++|+=+++=.. .++
T Consensus 2 i~pSil~ad~~~l~~~i~~l~~~g~~~lH--~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~--------~p~ 71 (220)
T PRK08883 2 IAPSILSADFARLGEDVEKVLAAGADVVH--FDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVK--------PVD 71 (220)
T ss_pred cchhhhhcCHHHHHHHHHHHHHcCCCEEE--EecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccC--------CHH
Confidence 56788888888888889888777888865 4776621 11 2467788876 577765554432 234
Q ss_pred HHHHHHHHHHHcCCcEEEEe
Q 015614 86 KRLEALHLAEDLGADYVDFE 105 (403)
Q Consensus 86 ~~~~ll~~~~~~g~~yvDiE 105 (403)
.|+ +...+.|+++|-+=
T Consensus 72 ~~i---~~~~~~gad~i~~H 88 (220)
T PRK08883 72 RII---PDFAKAGASMITFH 88 (220)
T ss_pred HHH---HHHHHhCCCEEEEc
Confidence 444 34455566665543
No 495
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=70.20 E-value=11 Score=40.29 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=29.8
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHH----HCCC-------eEEEEecC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAK----SRGA-------RVVIFDID 400 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~----~~g~-------~i~v~nR~ 400 (403)
.+++..+++++|||.|+-+|+..|. +.|. +|+++++.
T Consensus 293 ~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~ 340 (559)
T PTZ00317 293 VPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSK 340 (559)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCC
Confidence 4577789999999999988888765 4676 68888864
No 496
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=70.03 E-value=1.1e+02 Score=29.62 Aligned_cols=126 Identities=18% Similarity=0.226 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCCCCCchHHHHH---Hh---cCCCcEEEEeecCCCCCC--CCCCHHHHHH-HHHH
Q 015614 23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEII---LT---KKPLPVLIVYRPKWAGGL--YEGDEHKRLE-ALHL 93 (403)
Q Consensus 23 ~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~l~~l---~~---~~~~PiI~T~R~~~eGG~--~~~~~~~~~~-ll~~ 93 (403)
..+....+++...|+|+|=.-+-.-.+.+ .+++..+ +. ...+|++.-.......=. +..+ .+... .-..
T Consensus 97 ~~~~~~ve~ai~lgadAV~~~Vy~Gse~e-~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d-~~~v~~aaRl 174 (265)
T COG1830 97 QVLVATVEDAIRLGADAVGATVYVGSETE-REMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRD-ADLVGYAARL 174 (265)
T ss_pred ceeeeeHHHHHhCCCcEEEEEEecCCcch-HHHHHHHHHHHHHHHHcCCceEEEEeccCCccccccccc-HHHHHHHHHH
Confidence 33455577777899999999988766554 3445443 32 358999875543311110 1222 22332 2346
Q ss_pred HHHcCCcEEEEeccccchHHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCC
Q 015614 94 AEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGA 154 (403)
Q Consensus 94 ~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~ga 154 (403)
+.++|+|.|=..+.-..+-++++... -+ +.||+|== .++.+..+++++...+.+.||
T Consensus 175 aaelGADIiK~~ytg~~e~F~~vv~~-~~-vpVviaGG--~k~~~~~~~l~~~~~ai~aGa 231 (265)
T COG1830 175 AAELGADIIKTKYTGDPESFRRVVAA-CG-VPVVIAGG--PKTETEREFLEMVTAAIEAGA 231 (265)
T ss_pred HHHhcCCeEeecCCCChHHHHHHHHh-CC-CCEEEeCC--CCCCChHHHHHHHHHHHHccC
Confidence 77889999999988877777777744 23 88999853 244455677788777777676
No 497
>PRK07846 mycothione reductase; Reviewed
Probab=69.99 E-value=7.3 Score=40.41 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=30.8
Q ss_pred CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
.++++|+|+|-.|--++..|.++|.+|+++.|..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~ 199 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG 199 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 4789999999999999999999999999998853
No 498
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=69.97 E-value=6.7 Score=40.51 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=30.8
Q ss_pred CCeEEEEcchhHHHHHHHHHHHCCCeEEEEecCC
Q 015614 368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF 401 (403)
Q Consensus 368 ~~~~lilGaGGaarai~~al~~~g~~i~v~nR~~ 401 (403)
+++++|+|+|-.|--++..|.++|.+|+++.|..
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 5799999999999999999999999999998753
No 499
>PRK12862 malic enzyme; Reviewed
Probab=69.96 E-value=9.1 Score=42.58 Aligned_cols=37 Identities=27% Similarity=0.240 Sum_probs=32.2
Q ss_pred CCCCCCeEEEEcchhHHHHHHHHHHHCCC---eEEEEecC
Q 015614 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDID 400 (403)
Q Consensus 364 ~~~~~~~~lilGaGGaarai~~al~~~g~---~i~v~nR~ 400 (403)
.+++..+++++|||.|+-+++.-|...|+ +|++++|.
T Consensus 189 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~ 228 (763)
T PRK12862 189 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIK 228 (763)
T ss_pred CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCC
Confidence 45667899999999999999999999998 69998864
No 500
>PLN02417 dihydrodipicolinate synthase
Probab=69.96 E-value=1.1e+02 Score=29.58 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=42.0
Q ss_pred CCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec---CCHhHHHHHHHHhccCCCCEEEEEc
Q 015614 121 QSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV---NDITEIARIFQLLSHCQVPIIAYSV 188 (403)
Q Consensus 121 ~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~---~~~~D~~~ll~~~~~~~~p~i~~~M 188 (403)
++...||+.. .+.+.++..+..+.+++.|+|.+=++... .+.+.+.+-++...... |++.++.
T Consensus 68 ~~~~pvi~gv----~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~-pi~lYn~ 133 (280)
T PLN02417 68 GGKIKVIGNT----GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMG-PTIIYNV 133 (280)
T ss_pred CCCCcEEEEC----CCccHHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhC-CEEEEEC
Confidence 4567777764 34567899999999999999987766432 23445555444444444 8877765
Done!