Query 015618
Match_columns 403
No_of_seqs 121 out of 211
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 07:59:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05208 ALG3: ALG3 protein; 100.0 2E-152 5E-157 1135.8 28.8 341 26-369 1-368 (368)
2 KOG2762 Mannosyltransferase [C 100.0 1E-148 3E-153 1098.7 29.8 367 15-391 16-411 (429)
3 KOG3893 Mannosyltransferase [C 97.5 0.00014 3.1E-09 73.8 6.2 291 43-383 46-401 (405)
4 PLN02841 GPI mannosyltransfera 97.2 0.068 1.5E-06 56.5 21.9 271 44-386 34-417 (440)
5 COG5650 Predicted integral mem 96.4 0.0083 1.8E-07 64.2 7.5 133 130-264 219-354 (536)
6 PF05007 Mannosyl_trans: Manno 96.2 0.13 2.9E-06 50.9 14.1 210 130-383 8-258 (259)
7 TIGR03459 crt_membr carotene b 95.1 0.21 4.6E-06 53.3 11.5 135 46-180 94-269 (470)
8 PF13231 PMT_2: Dolichyl-phosp 94.3 0.67 1.5E-05 39.5 10.8 99 82-180 3-132 (159)
9 PRK13375 pimE mannosyltransfer 93.9 2.2 4.7E-05 45.0 15.5 192 26-222 19-241 (409)
10 PF09594 DUF2029: Protein of u 92.8 0.38 8.3E-06 44.0 7.2 84 129-219 76-162 (241)
11 PF03155 Alg6_Alg8: ALG6, ALG8 92.7 0.48 1E-05 50.5 8.6 100 131-231 160-269 (469)
12 PF14897 EpsG: EpsG family 91.0 6.5 0.00014 37.6 13.6 117 50-177 23-162 (330)
13 COG5542 Predicted integral mem 89.4 1.2 2.5E-05 47.1 7.5 78 122-200 162-241 (420)
14 KOG2575 Glucosyltransferase - 88.3 2.1 4.5E-05 45.6 8.4 186 36-223 41-296 (510)
15 TIGR03766 conserved hypothetic 83.1 44 0.00096 35.5 15.4 129 45-180 87-253 (483)
16 PF09852 DUF2079: Predicted me 81.4 30 0.00064 36.2 13.2 132 47-181 7-166 (449)
17 PF02366 PMT: Dolichyl-phospha 75.8 27 0.00059 32.9 10.0 56 122-177 129-197 (245)
18 PF04188 Mannosyl_trans2: Mann 75.3 8.8 0.00019 40.4 7.2 94 121-214 157-258 (443)
19 TIGR03663 conserved hypothetic 74.9 1.2E+02 0.0026 32.2 26.6 118 49-173 23-173 (439)
20 KOG2576 Glucosyltransferase - 71.5 15 0.00032 39.3 7.7 101 131-231 158-270 (500)
21 PF06728 PIG-U: GPI transamida 70.4 17 0.00036 37.6 7.8 88 130-217 146-246 (382)
22 KOG3359 Dolichyl-phosphate-man 49.0 45 0.00098 37.9 6.8 75 130-206 174-271 (723)
23 PRK13279 arnT 4-amino-4-deoxy- 41.2 5.3E+02 0.011 28.5 15.3 158 42-204 23-223 (552)
24 PF11028 DUF2723: Protein of u 41.1 67 0.0014 30.2 5.8 34 149-182 138-171 (178)
25 KOG4214 Myotrophin and similar 40.5 18 0.00039 31.9 1.8 60 39-104 4-64 (117)
26 cd08888 SRPBCC_PITPNA-B_like L 39.5 9.9 0.00021 38.0 0.0 28 340-367 64-95 (258)
27 cd09071 FAR_C C-terminal domai 39.4 11 0.00023 30.5 0.2 24 43-69 67-90 (92)
28 COG4346 Predicted membrane-bou 37.0 1.1E+02 0.0024 32.6 7.0 69 136-204 215-284 (438)
29 COG3463 Predicted membrane pro 31.3 4.6E+02 0.01 28.6 10.6 141 36-178 23-191 (458)
30 cd07815 SRPBCC_PITP Lipid-bind 31.0 15 0.00032 36.7 -0.3 28 340-367 64-95 (251)
31 TIGR03718 R_switched_Alx integ 30.9 1.5E+02 0.0033 30.4 6.8 68 306-379 221-292 (302)
32 KOG2446 Glucose-6-phosphate is 27.1 42 0.00091 36.4 2.2 31 51-81 348-381 (546)
33 PF11057 Cortexin: Cortexin of 26.5 1.1E+02 0.0023 25.9 3.9 28 44-71 53-80 (81)
34 cd08889 SRPBCC_PITPNM1-2_like 25.8 23 0.0005 35.5 0.1 28 340-367 66-97 (260)
35 cd08890 SRPBCC_PITPNC1_like Li 25.3 23 0.00049 35.4 -0.1 28 340-367 64-94 (250)
36 PF03929 PepSY_TM: PepSY-assoc 25.0 58 0.0013 22.0 1.8 20 117-141 2-21 (27)
37 COG1928 PMT1 Dolichyl-phosphat 22.2 1.7E+02 0.0036 33.5 5.7 47 128-174 162-220 (699)
38 KOG2515 Mannosyltransferase [C 21.7 3.8E+02 0.0082 29.7 8.0 75 132-208 151-227 (568)
39 PF10716 NdhL: NADH dehydrogen 21.3 2.5E+02 0.0055 23.8 5.3 47 128-176 11-69 (81)
No 1
>PF05208 ALG3: ALG3 protein; InterPro: IPR007873 The formation of N-glycosidic linkages of glycoproteins involves the ordered assembly of the common Glc3Man9GlcNAc2 core-oligosaccharide on the lipid carrier dolichyl pyrophosphate. Whereas early mannosylation steps occur on the cytoplasmic side of the endoplasmic reticulum with GDP-Man as donor, the final reactions from Man5GlcNAc2-PP-Dol to Man9GlcNAc2-PP-Dol on the lumenal side use Dol-P-Man []. The ALG3 gene encodes the Dol-P-Man:Man5GlcNAc2-PP-Dol mannosyltransferase.; GO: 0016758 transferase activity, transferring hexosyl groups, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=100.00 E-value=2.3e-152 Score=1135.79 Aligned_cols=341 Identities=54% Similarity=0.982 Sum_probs=315.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCHHHHHHHhhhhcccccccccccCCCCCccccchhHHHHHHHHHHh--ccccccc
Q 015618 26 FAFGLIIMDALLVALIITYVPYTKIDWDAYMSQVSGFLEGERDYSNLKGDTGPLVYPAGFLYVYSAIQYIT--GGEVYSA 103 (403)
Q Consensus 26 ~~~~lll~e~~l~~~II~~VpYTEIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPLVYPAGfVyiYs~Ly~lT--G~nI~~a 103 (403)
++|+++++|+++|++||+|||||||||+|||||||+|+||||||+|||||||||||||||||||++||++| |+||+.|
T Consensus 1 v~~~lll~e~~l~~~II~~VpYTEIDw~aYMqqv~~~~~Ge~DYs~i~GdTGPlVYPAGfVyiY~~Ly~lT~~G~~I~~a 80 (368)
T PF05208_consen 1 VAPLLLLAESVLCKLIIWKVPYTEIDWKAYMQQVEGFLNGERDYSKIKGDTGPLVYPAGFVYIYSFLYYLTDGGENIRLA 80 (368)
T ss_pred CcchHHHHHHHHHHHheeeccCccccHHHHHHHHHHHHcCcccHHHhcCCCCCccccchHHHHHHHHHHHhcCCCcHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred c-----------------------CChhHHHHHhhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHhhh
Q 015618 104 Q-----------------------LPWWGLSLLCLSKRVHSIFVLRLFNDCFAMTFLHAALALLLDQRWHLGLIIFSVAV 160 (403)
Q Consensus 104 Q-----------------------~Pp~~l~ll~lSKRlHSIfVLRLFND~~a~~~l~~ai~l~~~~~w~~gs~~ySlav 160 (403)
| +|||+++++|+|||+||||||||||||+||+++|+||++++++||.+||++||+||
T Consensus 81 Q~iF~~lyl~t~~~v~~~Y~~~~~~Pp~~~~ll~lSkRlHSI~vLRlFND~~a~~~~~~ai~~~~~~~w~~g~~~yS~av 160 (368)
T PF05208_consen 81 QYIFAGLYLATLALVFRIYSRSRKLPPWLLILLCLSKRLHSIFVLRLFNDCFAMLFLYAAILLFQRRRWLLGSLLYSLAV 160 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhhhheecHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHHHHHHHhcChHHHHHHHHHHHHHHHHHhccccccChHhHhhhcccccceeeEeeeeeeeecCccCCC
Q 015618 161 SIKMNVLLYAPPLFLLLLKALGIFGVISTLASAALVQILFGFPFLISHPVAYVSRAFNLGRVFIHFWSVNFKFVPEPVFV 240 (403)
Q Consensus 161 SIKMN~LLf~Pallv~l~~~~g~~~~~~~l~i~~~vQvllg~PFL~~~p~~Yl~~AFdf~R~Fl~kWTVNWrFv~Ee~F~ 240 (403)
|||||+|||+||+++++++++|+.+++.++.+|+++|+++|+|||++||++|++|||||||||+|||||||||||||+|+
T Consensus 161 SIKMN~LL~~Pall~~~l~~~g~~~~~~~l~v~~~vQvllg~PFL~~~p~~Yl~~AFdf~R~Fl~kWTVNwrFv~Ee~F~ 240 (368)
T PF05208_consen 161 SIKMNALLFAPALLVLLLQSLGLLKTLWYLAVCALVQVLLGLPFLLTNPWSYLSRAFDFSRQFLYKWTVNWRFVPEEIFL 240 (368)
T ss_pred HHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhHHHHhCHHHHHHHhcccCceEEEEEEEeeEEcCHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhccccc-ChHHHHHHHHHHHHhhhcCCCCCCCCccccchhHHHH-HHHHHHHHHHHh
Q 015618 241 SKGFAISLLTTHLVVLAAFSHYRWCKHEG-GLLNFLHSRYVAMKMKFAGLSSSNSSSRILKKEHIVT-TMFAGNFIGIVC 318 (403)
Q Consensus 241 s~~F~~~LL~~H~~~L~~F~~~rw~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~l~tsNfIGi~f 318 (403)
||+||++||++|+++|++|+.+||++..+ ...++.++.. ++.++.... ++....+.+|+++++ +|++||+|||+|
T Consensus 241 s~~F~~~LL~~H~~~L~~F~~~rw~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~lftsNfIGIlf 317 (368)
T PF05208_consen 241 SKRFHLALLALHLALLLLFAFTRWIRPSGRSLRGLIKSLL--KPFRPNSQL-NSVISSPLTPDYIVTTPLFTSNFIGILF 317 (368)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHH--hcccccccc-cccccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997553 3333333322 221111111 112334566776655 599999999999
Q ss_pred hcccchhhHHHHHhhhhHHhhcCCCChhHHHHHHHHhHhhcccCCCchHHH
Q 015618 319 ARSLHYQFYLWYFYSLPYLLWRTPFPTLLRLILFMGVELCWNVYPSNIYSS 369 (403)
Q Consensus 319 ARSLHYQFy~WY~~tlP~LLw~t~~p~~~~~~~~~~~E~~WNvyPST~~SS 369 (403)
||||||||||||+||+|+|||+||+|+++++++|++|||||||||||+.||
T Consensus 318 ARSLHYQFysWY~~tlP~LLw~t~~p~~~~~~~~~~~E~~WNvyPST~~SS 368 (368)
T PF05208_consen 318 ARSLHYQFYSWYFWTLPFLLWCTGLPPPLKIALWGAIEYCWNVYPSTPLSS 368 (368)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCcCCCcCCC
Confidence 999999999999999999999999999999999999999999999999998
No 2
>KOG2762 consensus Mannosyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-148 Score=1098.65 Aligned_cols=367 Identities=56% Similarity=0.973 Sum_probs=342.6
Q ss_pred eeeeecCchhH--HHHHHHHHHHHHHHHHHhhccccccCHHHHHHHhhhhcccccccccccCCCCCccccchhHHHHHHH
Q 015618 15 FLGIFKSSKVA--FAFGLIIMDALLVALIITYVPYTKIDWDAYMSQVSGFLEGERDYSNLKGDTGPLVYPAGFLYVYSAI 92 (403)
Q Consensus 15 ~~~~~~~p~~~--~~~~lll~e~~l~~~II~~VpYTEIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPLVYPAGfVyiYs~L 92 (403)
+--++.||... +++.++++|++++.+||.|||||||||+|||||||+|++||+||++++||||||||||||||||+++
T Consensus 16 ~r~l~~~~~~~~iv~~~L~LaE~~l~~~iI~kV~YTEIDw~AYM~qve~fl~G~~dY~ql~GdTGPLVYPAGhv~iy~~l 95 (429)
T KOG2762|consen 16 VRVLFDDPRAGLIVAALLILAEAVLVFLIISKVPYTEIDWKAYMEQVEGFLNGELDYSQLVGDTGPLVYPAGHVYIYSLL 95 (429)
T ss_pred hhheecCCcchhHHHHHHHHHHHHHHHheeeecCcceecHHHHHHHHHHHHhcccchhhhcCCCCCccccchHHHHHHHH
Confidence 34458999987 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh--cccccccc-----------------------CChhHHHHHhhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHhh
Q 015618 93 QYIT--GGEVYSAQ-----------------------LPWWGLSLLCLSKRVHSIFVLRLFNDCFAMTFLHAALALLLDQ 147 (403)
Q Consensus 93 y~lT--G~nI~~aQ-----------------------~Pp~~l~ll~lSKRlHSIfVLRLFND~~a~~~l~~ai~l~~~~ 147 (403)
||+| |+||++|| +|||+++++|+|||+||||||||||||+||+++|++++.+..+
T Consensus 96 y~lTs~g~nv~~aQ~iF~~lYl~tLalv~~iy~kt~~vPp~vlvL~~lskRiHSIfVLRLFND~fa~lll~~~i~~~l~q 175 (429)
T KOG2762|consen 96 YYLTSGGTNVRRAQYIFAGLYLLTLALVLRIYHKTVRVPPWVLVLLCLSKRIHSIFVLRLFNDPFAMLLLYVAILLFLKQ 175 (429)
T ss_pred HHHHcCCCeeehHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhhhHHhcchHHHHHHHHHHHHHHHH
Confidence 9999 89999999 8999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhcChHHHHHHHHHHHHHHHHHhccccccChHhHhhhcccccceeeEee
Q 015618 148 RWHLGLIIFSVAVSIKMNVLLYAPPLFLLLLKALGIFGVISTLASAALVQILFGFPFLISHPVAYVSRAFNLGRVFIHFW 227 (403)
Q Consensus 148 ~w~~gs~~ySlavSIKMN~LLf~Pallv~l~~~~g~~~~~~~l~i~~~vQvllg~PFL~~~p~~Yl~~AFdf~R~Fl~kW 227 (403)
||.+||++||+|||||||+|||+||+++.++++.|..+|+..+.+|+++|+++|+|||+++|.+|+++||||||+|+|||
T Consensus 176 kw~~gs~~fSlAvSVKMNvLLyaPall~~lL~~~~~~~tl~~L~v~~~vQilvg~PFLl~~p~~Yl~~aFDlGR~F~~kW 255 (429)
T KOG2762|consen 176 KWLVGSIFFSLAVSVKMNVLLYAPALLLLLLQNLGPIGTLLHLAVCILVQILVGLPFLLYFPSSYLTQAFDLGRVFMYKW 255 (429)
T ss_pred HHHhHhhhheeehhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCchHhhChHHHHhhhcccccceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecCccCCCCchHHHHHHHHHHHHHHHHHHhhhc--ccccChHHHHHHHHHHHHhhhcCCCCCCCCccccchhHHH
Q 015618 228 SVNFKFVPEPVFVSKGFAISLLTTHLVVLAAFSHYRWC--KHEGGLLNFLHSRYVAMKMKFAGLSSSNSSSRILKKEHIV 305 (403)
Q Consensus 228 TVNWrFv~Ee~F~s~~F~~~LL~~H~~~L~~F~~~rw~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 305 (403)
||||||+|||+|+||+||.+||++|+++|++|+.+||+ |+..+...-+.+.+ ++ .+ ....+..++.+.
T Consensus 256 tVNwrflpe~~F~~k~Fh~aLL~~HL~lL~aFa~~~w~~~Rr~~~~~~sl~~~l--~k----~~----~~~~~~~t~~~~ 325 (429)
T KOG2762|consen 256 TVNWRFLPEEVFEDKRFHLALLILHLTLLVAFACYRWNKLRRLEDLLSSLNSML--SK----RP----LPALPAATPQIV 325 (429)
T ss_pred eeeeEeCcHHHhccchHHHHHHHHHHHHHHHHHHhcchhhhcchhHHHhhhhhh--hc----CC----CCCCcCccchhh
Confidence 99999999999999999999999999999999999998 55555554333333 11 11 112223334577
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHHHhhhhHHhhcCCCChhHHHHHHHHhHhhcccCCCchHHHHHHHHHHHHHHHHHhh
Q 015618 306 TTMFAGNFIGIVCARSLHYQFYLWYFYSLPYLLWRTPFPTLLRLILFMGVELCWNVYPSNIYSSLLLLCLHLVILYGLWS 385 (403)
Q Consensus 306 ~~l~tsNfIGi~fARSLHYQFy~WY~~tlP~LLw~t~~p~~~~~~~~~~~E~~WNvyPST~~SS~~L~~~~~~ll~~l~~ 385 (403)
+++++||+|||+||||||||||+|||||+|||+|++++|..+++++|++||+||||||||+.||++|++||++++.++|.
T Consensus 326 ~~l~tsNlIGI~fsRSLHYQFysWYf~~lPyLl~~~~~p~~~r~~~~~liE~~WNvYPsT~~SS~lL~~~h~Iill~L~l 405 (429)
T KOG2762|consen 326 FTLFTSNLIGILFSRSLHYQFYSWYFHTLPYLLWQTPFPFLVRLILLGLIELCWNVYPSTSLSSALLHCLHLIILLGLAL 405 (429)
T ss_pred HHHHhhchhhhhhhhhhHHHHHHHHHHhchHHHhhCCccHHHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 015618 386 APTEYP 391 (403)
Q Consensus 386 ~~~~~~ 391 (403)
.+...|
T Consensus 406 ~~~~~p 411 (429)
T KOG2762|consen 406 TPYRKP 411 (429)
T ss_pred CCCCCc
Confidence 877665
No 3
>KOG3893 consensus Mannosyltransferase [Carbohydrate transport and metabolism]
Probab=97.54 E-value=0.00014 Score=73.77 Aligned_cols=291 Identities=19% Similarity=0.287 Sum_probs=166.3
Q ss_pred hhccccccCHHHHHHHhhhhcccccc-------cccccCC-CCCcc--ccchhHHHHH--------HHHHHh-ccccccc
Q 015618 43 TYVPYTKIDWDAYMSQVSGFLEGERD-------YSNLKGD-TGPLV--YPAGFLYVYS--------AIQYIT-GGEVYSA 103 (403)
Q Consensus 43 ~~VpYTEIDw~AYMqqv~~~l~Ge~D-------Ys~i~Gd-TGPLV--YPAGfVyiYs--------~Ly~lT-G~nI~~a 103 (403)
.+||||+||++-.-+-.+.+.+|.-- |+-+.|- --|-+ .|+===++|. .+|.+- -+.|..-
T Consensus 46 ~~v~~TDIDY~VftDaar~Vs~G~sPf~R~TYRYtP~la~ll~pni~~~p~~GK~Lf~~~Dll~a~L~~kLl~~~~i~~~ 125 (405)
T KOG3893|consen 46 SAVPYTDIDYKVFTDAARQVSAGDSPFARATYRYTPILAWLLTPNIYLFPAWGKLLFAIFDLLIATLIYKLLHMRSISRK 125 (405)
T ss_pred ccCCccccceeEeehhhHHhhcCCChhhhhhhcccHHHHHHhccceecCchHHHHHHHHHHHHHHHHHHHHHhhhhcchh
Confidence 47999999999999999999988643 4333221 01212 2442223332 233333 3556666
Q ss_pred c----CChhHHHHHh--hhhhhhhhhhhhhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhHHHHH
Q 015618 104 Q----LPWWGLSLLC--LSKRVHSIFVLRLFNDCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLFLLL 177 (403)
Q Consensus 104 Q----~Pp~~l~ll~--lSKRlHSIfVLRLFND~~a~~~l~~ai~l~~~~~w~~gs~~ySlavSIKMN~LLf~Pallv~l 177 (403)
| .--|++=.+. .|-|=. -||+.-.+.-+.++++++++|..+++++.+||=.|.==+.|.|++.+-+
T Consensus 126 ~a~~~~~fWLlNPl~aiIStRGN--------aesi~~~lvi~~lyllqK~~v~~A~l~~GlaIh~KIYPliY~l~i~l~l 197 (405)
T KOG3893|consen 126 QALIYASFWLLNPLTAIISTRGN--------AESIVAFLVILTLYLLQKSEVFLAGLAHGLAIHLKIYPLIYSLAIYLSL 197 (405)
T ss_pred hhhHhhhhhhcCchheeeecCCc--------hHHHHHHHHHHHHHHHHHhHHHHHHHHhhheeeeEechHHhhhhhheEE
Confidence 6 2223322222 355532 4888888899999999999999999999999999999999999998765
Q ss_pred HHhc---Ch-----------------HHHHHHHHHHH-HHHHHHhccccccChHhHhh---hcccccceeeEeeeeeeee
Q 015618 178 LKAL---GI-----------------FGVISTLASAA-LVQILFGFPFLISHPVAYVS---RAFNLGRVFIHFWSVNFKF 233 (403)
Q Consensus 178 ~~~~---g~-----------------~~~~~~l~i~~-~vQvllg~PFL~~~p~~Yl~---~AFdf~R~Fl~kWTVNWrF 233 (403)
.... +. .+++.....|. ..=-.-|+|||-+.-.=-+. .+=|||-.|+- ..
T Consensus 198 s~~~~~s~~~~~l~sLL~~~k~l~~~~~tLtsf~~~~~~fY~iYG~eFLd~~ylYH~~R~D~rHNFS~~f~l------lY 271 (405)
T KOG3893|consen 198 STRKTQSTPLDKLCSLLSINKQLCLILGTLTSFAACTWTFYYIYGWEFLDEAYLYHFVRRDHRHNFSLYFLL------LY 271 (405)
T ss_pred ecCCCCCcHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhheecccccccCCHHHHH------HH
Confidence 5411 11 23333344441 12234566666422000000 12244444431 12
Q ss_pred cCccC-CCCchHHHHHHHHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHhhhcCCCCCCCCccccchhHHHHHHHHHH
Q 015618 234 VPEPV-FVSKGFAISLLTTHLVVLAAFSHYRWCKHEGGLLNFLHSRYVAMKMKFAGLSSSNSSSRILKKEHIVTTMFAGN 312 (403)
Q Consensus 234 v~Ee~-F~s~~F~~~LL~~H~~~L~~F~~~rw~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~tsN 312 (403)
++++- +-|+.-+..-.+=++.+++.+.+.-|.+. +. ..+|..-
T Consensus 272 l~sas~~~s~~l~~~AflPQllLi~~~~~~~~~~~---Lp---------------------------------fc~F~~T 315 (405)
T KOG3893|consen 272 LGSASAEGSAILGLLAFLPQLLLILYLSLSFGQQD---LP---------------------------------FCLFAQT 315 (405)
T ss_pred HHccCccHHHHHhHHHHHHHHHHHHHHHHHhcccC---CC---------------------------------ceeeeee
Confidence 34443 44444444444556666665555433311 00 0011111
Q ss_pred HHHHHhhcccchhhHHHHHhhhhHHhhcCCCChhH----------HHHHHHHhHh-----hcccCCCchHHHHHHHHHHH
Q 015618 313 FIGIVCARSLHYQFYLWYFYSLPYLLWRTPFPTLL----------RLILFMGVEL-----CWNVYPSNIYSSLLLLCLHL 377 (403)
Q Consensus 313 fIGi~fARSLHYQFy~WY~~tlP~LLw~t~~p~~~----------~~~~~~~~E~-----~WNvyPST~~SS~~L~~~~~ 377 (403)
|+=|.+-.=---|++.||---+|+.+..+.++.-- .=++|.+.-| .||||=.--.+|.+....|.
T Consensus 316 fafVTyNKVcTSQYFvWYLv~LPl~l~~~~l~wkr~l~ll~lW~~~Q~lWL~~aY~lEf~gkNtF~~i~Lag~lFf~~N~ 395 (405)
T KOG3893|consen 316 FAFVTYNKVCTSQYFVWYLVLLPLVLPNFMLSWKRALGLLFLWFITQALWLLPAYLLEFQGKNTFYPIFLAGLLFFATNV 395 (405)
T ss_pred eeEEEechhhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 11111111112499999999999999999887532 2233443333 49999778889999999998
Q ss_pred HHHHHH
Q 015618 378 VILYGL 383 (403)
Q Consensus 378 ~ll~~l 383 (403)
.+|--+
T Consensus 396 ~iL~qi 401 (405)
T KOG3893|consen 396 YILKQI 401 (405)
T ss_pred HHHHHH
Confidence 887654
No 4
>PLN02841 GPI mannosyltransferase
Probab=97.25 E-value=0.068 Score=56.47 Aligned_cols=271 Identities=21% Similarity=0.377 Sum_probs=154.9
Q ss_pred hccccccCHHHHHHHhhhhcccccccccccCCC---CCcc----ccchh------HHHHHHHHHHhccccccccCChhHH
Q 015618 44 YVPYTKIDWDAYMSQVSGFLEGERDYSNLKGDT---GPLV----YPAGF------LYVYSAIQYITGGEVYSAQLPWWGL 110 (403)
Q Consensus 44 ~VpYTEIDw~AYMqqv~~~l~Ge~DYs~i~GdT---GPLV----YPAGf------VyiYs~Ly~lTG~nI~~aQ~Pp~~l 110 (403)
.|+||.|||+-+-|-+..+.+|+=-| +||| =||. -|.-+ -.+|...--++| |.+
T Consensus 34 eVsytdidY~vftDga~lv~~G~SPY---~r~TYrytPLLa~LllPn~~~~~~fgk~LF~l~Dll~a----------~ll 100 (440)
T PLN02841 34 EVRYTDVDYLVFSDAAALVASGKSPF---ARDTYRYSPLLALLLVPNSLLHRSWGKFLFSAADLLVG----------LFI 100 (440)
T ss_pred cccccccchHHHHHHHHHHHcCCCCC---CCCCCCcChHHHHHHcchhhhhhhHHHHHHHHHHHHHH----------HHH
Confidence 69999999999999999999997555 3443 2321 12111 112222211221 100
Q ss_pred HHHhhhh-----hhhhh-hhhhhhc------------chhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhh
Q 015618 111 SLLCLSK-----RVHSI-FVLRLFN------------DCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPP 172 (403)
Q Consensus 111 ~ll~lSK-----RlHSI-fVLRLFN------------D~~a~~~l~~ai~l~~~~~w~~gs~~ySlavSIKMN~LLf~Pa 172 (403)
.-+ +.+ +...+ -.+=||| |++..+++-.+++..+++|+..+++.+.+|+-.|+--..|+|.
T Consensus 101 ~~i-l~~~~~~~~~~~~~a~~wL~NPlti~istrGSse~i~~~lvl~~L~~l~~g~~~~Aa~~lglavhfkiYPiIy~~P 179 (440)
T PLN02841 101 HTI-LRLRGVPEKVCTWSVMVWLFNPFTFTIGTRGNCEPIVCAVILWILICLMNGRLLQAAFWYGLVVHFRIYPIIYALP 179 (440)
T ss_pred HHH-HHHhCccccccHHHHHHHHhCcHHHHHhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 000 000 00011 1123556 7888888888999999999999999999999999999999988
Q ss_pred HHHHHHHhc---------------C---------------------------------hHHHHHHHHHHHHHHHHHhccc
Q 015618 173 LFLLLLKAL---------------G---------------------------------IFGVISTLASAALVQILFGFPF 204 (403)
Q Consensus 173 llv~l~~~~---------------g---------------------------------~~~~~~~l~i~~~vQvllg~PF 204 (403)
++..+-... . +......+..-+..-.+-|.||
T Consensus 180 i~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~s~~tf~~l~~~~y~~YG~~F 259 (440)
T PLN02841 180 IILVLDKQYFGPGGRPALTKWNSKQNKTPSSNTEATSFLFNLWTFLTSLFSRERIMFGLISGGVFFALTGVSFYLYGWEF 259 (440)
T ss_pred HHHHhccccccccccccchhhhccccccccccccccchhhhhhHHHHhccCHhhhhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 887772110 0 0011122222344456778899
Q ss_pred cc-------------cC--h---HhHhhhcccccceeeEeeeeeeeecCccCCCCchHHHHHHHHHHHHHHHHHHhhhcc
Q 015618 205 LI-------------SH--P---VAYVSRAFNLGRVFIHFWSVNFKFVPEPVFVSKGFAISLLTTHLVVLAAFSHYRWCK 266 (403)
Q Consensus 205 L~-------------~~--p---~~Yl~~AFdf~R~Fl~kWTVNWrFv~Ee~F~s~~F~~~LL~~H~~~L~~F~~~rw~~ 266 (403)
|. || | .-|++.+-+.+ ..-...-.+=++.+.++..+ ++.+
T Consensus 260 L~eaylYHl~R~DhRHNFS~yfy~lYL~~~~~~~---------------------~~~~~~aFlPQl~l~~~~~~-~~~~ 317 (440)
T PLN02841 260 LNEALLYHLTRTDPRHNFSIYFYHIYLHHEQGFS---------------------LVERLASFLPQFLVQLALIL-CFSQ 317 (440)
T ss_pred HHHHHHHhheecCCCccCcHHHHHHHHhCCCcch---------------------hHHHHHHHHHHHHHHHHHHH-HHHc
Confidence 86 33 2 44566421110 00011112223333222211 2211
Q ss_pred cccChHHHHHHHHHHHHhhhcCCCCCCCCccccchhHHHHHHHHHHHHHHHhhcccchhhHHHHHhhhhHHhhcCCCCh-
Q 015618 267 HEGGLLNFLHSRYVAMKMKFAGLSSSNSSSRILKKEHIVTTMFAGNFIGIVCARSLHYQFYLWYFYSLPYLLWRTPFPT- 345 (403)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~tsNfIGi~fARSLHYQFy~WY~~tlP~LLw~t~~p~- 345 (403)
+- ...||.=-+.=|.|-+=-==|++.||.--+|+.+-.+.++.
T Consensus 318 -dl-----------------------------------~~~~f~qT~~FVtfNKVcTsQYF~Wyl~lLPl~l~~~~~~~~ 361 (440)
T PLN02841 318 -DL-----------------------------------PFCLFLQTVAFVAFNKVITAQYFVWFFCLLPLILPWSRMKLK 361 (440)
T ss_pred -cc-----------------------------------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccchh
Confidence 11 11222222222333333334999999999999998877765
Q ss_pred ---hHHHHHHHHhHhhc------------ccCCCchHHHHHHHHHHHHHHHHHhhc
Q 015618 346 ---LLRLILFMGVELCW------------NVYPSNIYSSLLLLCLHLVILYGLWSA 386 (403)
Q Consensus 346 ---~~~~~~~~~~E~~W------------NvyPST~~SS~~L~~~~~~ll~~l~~~ 386 (403)
...+++|++-+-.| |+|=.--.+|.+..++|..++..+...
T Consensus 362 ~~~~~~l~lW~~~Q~~WL~~aY~LEF~G~n~F~~lw~asl~Ff~~n~~il~~~i~~ 417 (440)
T PLN02841 362 WKGLLCILVWMGSQLHWLMWAYLLEFKGRNVFLQLWIASLLFLAANTFVLLMIIQH 417 (440)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55678888887765 555545569999999999888777754
No 5
>COG5650 Predicted integral membrane protein [Function unknown]
Probab=96.41 E-value=0.0083 Score=64.22 Aligned_cols=133 Identities=25% Similarity=0.305 Sum_probs=113.2
Q ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhcChHHHHHHHHHHHHHHHHHhccccccCh
Q 015618 130 DCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLFLLLLKALGIFGVISTLASAALVQILFGFPFLISHP 209 (403)
Q Consensus 130 D~~a~~~l~~ai~l~~~~~w~~gs~~ySlavSIKMN~LLf~Pallv~l~~~~g~~~~~~~l~i~~~vQvllg~PFL~~~p 209 (403)
|.++++++-++..+ |+|=.++.+++.+|.|.|---+..+|.++...++.-|.+.+.......+..=+++-.||+..+|
T Consensus 219 DtI~~ffla~a~v~--r~rP~lAGvl~Gls~a~K~~P~Ivl~pll~~~~keyg~~~a~~f~~~aa~t~lLvN~PfiI~~P 296 (536)
T COG5650 219 DTIWAFFLAAALVC--RGRPKLAGVLIGLSSAFKQIPLIVLPPLLYLIYKEYGLRPAIKFIATAAITWLLVNLPFIILGP 296 (536)
T ss_pred hHHHHHHHHHHHHh--cCCchHHHHHHHHHHHhhcCchhhHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHcCceEEech
Confidence 77788888777777 8888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhhcccccceee---EeeeeeeeecCccCCCCchHHHHHHHHHHHHHHHHHHhhh
Q 015618 210 VAYVSRAFNLGRVFI---HFWSVNFKFVPEPVFVSKGFAISLLTTHLVVLAAFSHYRW 264 (403)
Q Consensus 210 ~~Yl~~AFdf~R~Fl---~kWTVNWrFv~Ee~F~s~~F~~~LL~~H~~~L~~F~~~rw 264 (403)
+++.+..+-+.|+=. =.|++==.|.|-+-+.-..|....|.+-+.+...++.+.|
T Consensus 297 ~aw~~sil~~~~r~~~~~~~~~sI~s~aG~~~~~P~~F~~~~l~l~v~lf~lya~~~~ 354 (536)
T COG5650 297 RAWVESILLFARRGLIGVGIGISIPSFAGFYAVDPLLFIIPPLVLNVFLFVLYALYCN 354 (536)
T ss_pred HHHHHHHHhHHhcCCcccccceecccccccccccceEEehhHHHHHHHHHHHHHHHHH
Confidence 999999987776421 2355556777788888888888888877777777775444
No 6
>PF05007 Mannosyl_trans: Mannosyltransferase (PIG-M); InterPro: IPR007704 PIG-M has a DXD motif. The DXD motif is found in many glycosyltransferases that utilise nucleotide sugars. It is thought that the motif is involved in the binding of a manganese ion that is required for association of the enzymes with nucleotide sugar substrates [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=96.20 E-value=0.13 Score=50.90 Aligned_cols=210 Identities=21% Similarity=0.395 Sum_probs=123.4
Q ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhcC--h-------------HHHHHHHHHHH
Q 015618 130 DCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLFLLLLKALG--I-------------FGVISTLASAA 194 (403)
Q Consensus 130 D~~a~~~l~~ai~l~~~~~w~~gs~~ySlavSIKMN~LLf~Pallv~l~~~~g--~-------------~~~~~~l~i~~ 194 (403)
|++..++.-+++++++++||..+++++.+||-.|.==.-|+|++..-+..+.. . .-++..+...+
T Consensus 8 Esl~~~lVl~~l~~l~~~~~~~Aa~~lGlaVHfKIYPiIY~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~f~~~s~~tf~ 87 (259)
T PF05007_consen 8 ESLLCFLVLLTLYFLLKGRWFLAAILLGLAVHFKIYPIIYALPILLYLSNRKNGSFRSRLKRLLNPNRLKFGLISAITFA 87 (259)
T ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHhhHHHHhhhccHHHHHHHHHHHhccccchHHHHHHHhcCHhHhhhHHHHHHHHH
Confidence 77888888999999999999999999999999999999999999987654321 1 11111111111
Q ss_pred HH----HHHHhccccccChHhHhhhcccccceeeEeee--e--eeeecCccCC--CCchHHHHHHHHHHHHHHHHHHhhh
Q 015618 195 LV----QILFGFPFLISHPVAYVSRAFNLGRVFIHFWS--V--NFKFVPEPVF--VSKGFAISLLTTHLVVLAAFSHYRW 264 (403)
Q Consensus 195 ~v----Qvllg~PFL~~~p~~Yl~~AFdf~R~Fl~kWT--V--NWrFv~Ee~F--~s~~F~~~LL~~H~~~L~~F~~~rw 264 (403)
.. =.+-|.|||.|- | -+-+.|+ .++=- + -...++++.= .|......-.+=++.+++.... ++
T Consensus 88 ~l~~~~Y~~YG~~FL~ea---y---lYHl~R~-DhRHNFS~yfy~lYL~~~~~~~~s~~~~~~aflPQl~l~~~~~~-~~ 159 (259)
T PF05007_consen 88 ALTLLMYYIYGWEFLYEA---Y---LYHLTRK-DHRHNFSPYFYLLYLSSSSPTYSSSILGLLAFLPQLILILVISL-KF 159 (259)
T ss_pred HHHHHHHHHHChHHHHHH---H---hhheEee-cCCccCcHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHH-HH
Confidence 11 124477776521 1 1122332 11100 0 0011222211 2344444445555544444332 22
Q ss_pred cccccChHHHHHHHHHHHHhhhcCCCCCCCCccccchhHHHHHHHHHHHHHHHhhcccchhhHHHHHhhhhHHhhcCCC-
Q 015618 265 CKHEGGLLNFLHSRYVAMKMKFAGLSSSNSSSRILKKEHIVTTMFAGNFIGIVCARSLHYQFYLWYFYSLPYLLWRTPF- 343 (403)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~tsNfIGi~fARSLHYQFy~WY~~tlP~LLw~t~~- 343 (403)
++ + ....+|..-+.=|.|-+=.==|++.||..-+|..+-.+++
T Consensus 160 -~~--d---------------------------------L~~~~f~qT~~FVtFNKVcTsQYF~Wyl~lLPl~l~~~~l~ 203 (259)
T PF05007_consen 160 -YR--D---------------------------------LPFCLFLQTFAFVTFNKVCTSQYFLWYLCLLPLVLPRSRLL 203 (259)
T ss_pred -HC--c---------------------------------cchHHHHHHHHHHHhchhhcchHHHHHHHHHHHHhchhccc
Confidence 11 1 1122333333334444444569999999999999999887
Q ss_pred C---hhHHHHHHHHhHhhc------------ccCCCchHHHHHHHHHHHHHHHHH
Q 015618 344 P---TLLRLILFMGVELCW------------NVYPSNIYSSLLLLCLHLVILYGL 383 (403)
Q Consensus 344 p---~~~~~~~~~~~E~~W------------NvyPST~~SS~~L~~~~~~ll~~l 383 (403)
+ ....+++|++-+-.| |+|=.--.||.+...+|..++..+
T Consensus 204 s~~~~~~~l~~W~~~Q~~WL~~AY~LEF~G~n~F~~lw~asl~Ff~~N~~iL~~~ 258 (259)
T PF05007_consen 204 SWRKGVFLLALWVASQALWLLQAYLLEFLGKNTFLPLWLASLVFFIANVWILGQI 258 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 233466777777665 666555679999999998887643
No 7
>TIGR03459 crt_membr carotene biosynthesis associated membrane protein. This model represents a family of hydrophobic and presumed membrane proteins. The genes encoding these proteins are syntenically associated with (found proximal to) genes of carotene biosynthesis ususally including phytoene synthase (crtB), phytoene dehydrogenase (crtI) and geranylgeranyl pyrophosphate synthase (ispA).
Probab=95.12 E-value=0.21 Score=53.26 Aligned_cols=135 Identities=21% Similarity=0.290 Sum_probs=94.6
Q ss_pred cccccCHHHHHHHhhhhcccccccccccC-CCC-------------CccccchhHHHHHHHHHHhcccccccc-------
Q 015618 46 PYTKIDWDAYMSQVSGFLEGERDYSNLKG-DTG-------------PLVYPAGFLYVYSAIQYITGGEVYSAQ------- 104 (403)
Q Consensus 46 pYTEIDw~AYMqqv~~~l~Ge~DYs~i~G-dTG-------------PLVYPAGfVyiYs~Ly~lTG~nI~~aQ------- 104 (403)
|=--=|-=.|.-|=+...+|-=-|+.--. ..| |=.||=-|+++.++.-.+||+|+..+=
T Consensus 94 PlfSrDvYsYlaqG~l~~~G~dPY~~gP~~~~~~~~~~v~~~W~~t~aPYGPl~l~i~~~v~~l~g~~i~~~v~~~Rl~~ 173 (470)
T TIGR03459 94 PMMSRDVYSYLMQGALLRDGFDPYTVGAAANPGPLLDEVSPDWRNTTTPYGPLHLLVGQAITTVTGDNVTAGTLAFKLLS 173 (470)
T ss_pred CcccHHHHHHHHHHHHHHcCCCccccCCccCCchHhhhcCchhccCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 33344888898888888888555544211 112 446888899999999999999888654
Q ss_pred CChhHHHHHhh---hhh----hhhhhhh-------------hhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhh
Q 015618 105 LPWWGLSLLCL---SKR----VHSIFVL-------------RLFNDCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKM 164 (403)
Q Consensus 105 ~Pp~~l~ll~l---SKR----lHSIfVL-------------RLFND~~a~~~l~~ai~l~~~~~w~~gs~~ySlavSIKM 164 (403)
+.--+++.-++ .+| -|.+.-| =+=||...+.++-+++++..++||..|.++-++|++||-
T Consensus 174 l~g~~l~~w~~~rLar~~g~~~~~AlWL~~~NPLviihlvgg~HnealM~gl~l~gl~~~~r~~~~~g~vli~~a~~VK~ 253 (470)
T TIGR03459 174 LPGLAVMVWAVPKLATHLGGNPTVALWLGVLNPLVVIHLIGGMHNEMLMVGLVSAGILLALKRRPVAGIALIAVAVALKA 253 (470)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCchhhhhhhcchhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhH
Confidence 11111111111 111 1122211 123899999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHh
Q 015618 165 NVLLYAPPLFLLLLKA 180 (403)
Q Consensus 165 N~LLf~Pallv~l~~~ 180 (403)
..++.+|-+..+....
T Consensus 254 ~a~l~Lpf~~~~~~~~ 269 (470)
T TIGR03459 254 TAGIALPFVVWIWVAH 269 (470)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988766554
No 8
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=94.32 E-value=0.67 Score=39.45 Aligned_cols=99 Identities=23% Similarity=0.371 Sum_probs=64.8
Q ss_pred cchhHHHHHHHHHHhccccccccCChhHHHHHh------hhhhh------------------hhhhhhhhhcchhHHHHH
Q 015618 82 PAGFLYVYSAIQYITGGEVYSAQLPWWGLSLLC------LSKRV------------------HSIFVLRLFNDCFAMTFL 137 (403)
Q Consensus 82 PAGfVyiYs~Ly~lTG~nI~~aQ~Pp~~l~ll~------lSKRl------------------HSIfVLRLFND~~a~~~l 137 (403)
|-++-++.+..+.++|++....|++..+...+. +.||+ ...+....-+|...+++.
T Consensus 3 pPl~~~~~~~~~~l~G~~~~~~~~~~~l~~~~~~~~~y~i~r~~~~~~~a~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~ 82 (159)
T PF13231_consen 3 PPLYFLLLALFFKLFGDSVWALRLFNILFSLLTLLLIYLIARRLFGRRAALIAALLLALSPMFIFYSASARPDMLLLFFF 82 (159)
T ss_pred ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHH
Confidence 445667777777777766665662211111000 12222 223334555699999999
Q ss_pred HHHHHHHHh-------hhhhHHHHHHHhhhhhhhhhhhhhhhHHHHHHHh
Q 015618 138 HAALALLLD-------QRWHLGLIIFSVAVSIKMNVLLYAPPLFLLLLKA 180 (403)
Q Consensus 138 ~~ai~l~~~-------~~w~~gs~~ySlavSIKMN~LLf~Pallv~l~~~ 180 (403)
..+++.+.+ +.|-+.+++.++|.-.|.+.+.+.|++.+.++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k~~~~~~~~~~~~~l~~~ 132 (159)
T PF13231_consen 83 LLALYAFYRYIKSKKWRWWILAGLLLGLAFLTKYTFLLLIPALLLYLLLS 132 (159)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988863 3466899999999999999999999887754443
No 9
>PRK13375 pimE mannosyltransferase; Provisional
Probab=93.87 E-value=2.2 Score=44.96 Aligned_cols=192 Identities=16% Similarity=0.200 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHhh-c-cccccCHHHHHHHhhhhcccccccccc----cCCC-CCccccchhHHHHHHHHHHh-c
Q 015618 26 FAFGLIIMDALLVALIITY-V-PYTKIDWDAYMSQVSGFLEGERDYSNL----KGDT-GPLVYPAGFLYVYSAIQYIT-G 97 (403)
Q Consensus 26 ~~~~lll~e~~l~~~II~~-V-pYTEIDw~AYMqqv~~~l~Ge~DYs~i----~GdT-GPLVYPAGfVyiYs~Ly~lT-G 97 (403)
.+|.++....+.-.+.+-. . +..-||-+-|.+-.+.+++|+-=|+.- .+|. -|=.||=..--++.=|-++. +
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~vDl~VYr~g~~~~~~g~~LYd~~~~~~~~~~~LpFtYPPfaallf~PLalLp~~ 98 (409)
T PRK13375 19 AAPLLLVLSVAARLAWTYLAPNGANFVDLHVYVGGAAALDHPGTLYDYVYADQTPDFPLPFTYPPFAALVFYPLHLLPFG 98 (409)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCccHHHHHHhHHHHccCCcccCccccccCCCCCCCCCCCcHHHHHHHHHHhccHH
Confidence 4666665555544443322 2 234489999999999999987655443 2243 39999988888877776654 2
Q ss_pred cccccccCChh-HHHHHh-hhhhhhh-------hhh----hhhhcchh---------HHHHHHHHHHHHHhhhhhHHHHH
Q 015618 98 GEVYSAQLPWW-GLSLLC-LSKRVHS-------IFV----LRLFNDCF---------AMTFLHAALALLLDQRWHLGLII 155 (403)
Q Consensus 98 ~nI~~aQ~Pp~-~l~ll~-lSKRlHS-------IfV----LRLFND~~---------a~~~l~~ai~l~~~~~w~~gs~~ 155 (403)
...-.-|+=-. ++...+ ++.|... ... +=+.-+++ ..++|-+.+.-+.++||..+.++
T Consensus 99 ~a~~l~~~~~~~al~~~v~~~~r~l~~~~~~~~~a~~~~~~~l~~ePv~~tl~~GQIN~lL~~Lv~~dll~~r~~~aGvl 178 (409)
T PRK13375 99 VVAFLWQLATIAALYGVVRISQRLLGGGAGGHRVAMLWTAVGIWLEPVRSTFDYGQINVFLMLAVLYAVYSSRWWLSGLL 178 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHhHHHHHHHHhCcHHHHHHHHHHHHHhcCCccHHHHH
Confidence 11111111000 000000 1112110 000 00112332 23333333334457777788999
Q ss_pred HHhhhhhhhhhhhhhhhHHHHHHHhcChHHHHHHHHHHHHHHHHHhccccccChHhHhhhc-ccccce
Q 015618 156 FSVAVSIKMNVLLYAPPLFLLLLKALGIFGVISTLASAALVQILFGFPFLISHPVAYVSRA-FNLGRV 222 (403)
Q Consensus 156 ySlavSIKMN~LLf~Pallv~l~~~~g~~~~~~~l~i~~~vQvllg~PFL~~~p~~Yl~~A-Fdf~R~ 222 (403)
..+|.+||-. |+++.+++.-.+-.+++.........=+.+|+...-.++++|..+. +|.+|.
T Consensus 179 iGLAaaIKlT-----Pavf~l~lL~~RrWra~~~A~~t~~~~~~lg~~~~p~~s~~ywt~~l~~~~ri 241 (409)
T PRK13375 179 VGLAAGVKLT-----PAITGLYFLGARRWAAAAFSAVVFLATVGVSYLVVGDQARYYFTDLLGDADRV 241 (409)
T ss_pred HHHHHHhhhh-----hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcccccc
Confidence 9999999976 6666666677777788877777778788888888888899999986 577875
No 10
>PF09594 DUF2029: Protein of unknown function (DUF2029); InterPro: IPR018584 This is a putative transmembrane protein from prokaryotes. It is likely to be conserved between Mycobacterium species []. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=92.80 E-value=0.38 Score=44.02 Aligned_cols=84 Identities=27% Similarity=0.328 Sum_probs=55.5
Q ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhcChHHHHHHHHHHHHHHHHHhccccccC
Q 015618 129 NDCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLFLLLLKALGIFGVISTLASAALVQILFGFPFLISH 208 (403)
Q Consensus 129 ND~~a~~~l~~ai~l~~~~~w~~gs~~ySlavSIKMN~LLf~Pallv~l~~~~g~~~~~~~l~i~~~vQvllg~PFL~~~ 208 (403)
+|.+.++++..+++...++|+..++++.++|..+|---+++.|.+++ +...+..... ...+.+ ..++|++...
T Consensus 76 ~~~l~~~l~~~a~~~~~r~r~~~agv~lgla~~~K~~p~~~l~~ll~----~r~~r~~~~~-~~~~~~--~~~~~~~~~~ 148 (241)
T PF09594_consen 76 FDLLVAALLLLALLALRRGRPWLAGVLLGLAAAIKLYPALLLPALLI----RRRWRAALWA-AATAAV--LFALPFLLFG 148 (241)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHh----cchHHHHHHH-HHHHHH--HHHHHHHHcC
Confidence 58889999999999999998889999999999999887776663333 3333333333 222222 2333665433
Q ss_pred ---hHhHhhhcccc
Q 015618 209 ---PVAYVSRAFNL 219 (403)
Q Consensus 209 ---p~~Yl~~AFdf 219 (403)
...|.+.-++-
T Consensus 149 ~~~~~~~~~~l~~~ 162 (241)
T PF09594_consen 149 PDSWQDFLSVLFQN 162 (241)
T ss_pred chHHHHHHHHHHHH
Confidence 56666644444
No 11
>PF03155 Alg6_Alg8: ALG6, ALG8 glycosyltransferase family; InterPro: IPR004856 N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). The addition of the three glucose residues is the final series of steps in the synthesis of the oligosaccharide precursor. Alg6 transfers the first glucose residue, and Alg8 transfers the second one []. In the human alg6 gene, a C-T transition, which causes Ala333 to be replaced with Val, has been identified as the cause of a congenital disorder of glycosylation, designated as type Ic OMIM:603147 []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0005789 endoplasmic reticulum membrane
Probab=92.65 E-value=0.48 Score=50.54 Aligned_cols=100 Identities=33% Similarity=0.505 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhc--------ChHHHHHHHHHHHHHHHHHhc
Q 015618 131 CFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLFLLLLKAL--------GIFGVISTLASAALVQILFGF 202 (403)
Q Consensus 131 ~~a~~~l~~ai~l~~~~~w~~gs~~ySlavSIKMN~LLf~Pallv~l~~~~--------g~~~~~~~l~i~~~vQvllg~ 202 (403)
|+..-++-.|+..+.+++-.+|+++|++++.-|==.|-++|++++-++.++ ++.+.+....+...+-.+.=.
T Consensus 160 ~~~lGl~l~si~~~~~~~~l~~a~~F~~~Ln~Kqm~LY~Ap~~f~yLL~~c~~~~~~~~~~~~~~~lg~~Vi~~f~~~~~ 239 (469)
T PF03155_consen 160 GFLLGLLLLSIAALIRGRYLLGAILFSLLLNFKQMFLYYAPAFFVYLLGSCFQRKSFRFSIKRLIKLGIVVIATFALSFG 239 (469)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 667778888999999999999999999999999999999999999988742 245555555555555566668
Q ss_pred ccccc-ChHhHhhhcccccceeeE-eeeeee
Q 015618 203 PFLIS-HPVAYVSRAFNLGRVFIH-FWSVNF 231 (403)
Q Consensus 203 PFL~~-~p~~Yl~~AFdf~R~Fl~-kWTVNW 231 (403)
||+.. .-.+=++|=|-|+|-..+ ||- |+
T Consensus 240 PF~~~~~l~Qvl~RlFPF~RGL~hdy~A-Nf 269 (469)
T PF03155_consen 240 PFLYSGQLQQVLSRLFPFKRGLFHDYWA-NF 269 (469)
T ss_pred HHHHhhhHHHHHHHhCccccchHHHHHH-HH
Confidence 99854 456778999999998765 677 75
No 12
>PF14897 EpsG: EpsG family
Probab=90.99 E-value=6.5 Score=37.56 Aligned_cols=117 Identities=17% Similarity=0.249 Sum_probs=74.7
Q ss_pred cCHHHHHHHhhhhcccccccccccCCCCCccccchhHHHHHHHHHHhcccccccc------------------CC---hh
Q 015618 50 IDWDAYMSQVSGFLEGERDYSNLKGDTGPLVYPAGFLYVYSAIQYITGGEVYSAQ------------------LP---WW 108 (403)
Q Consensus 50 IDw~AYMqqv~~~l~Ge~DYs~i~GdTGPLVYPAGfVyiYs~Ly~lTG~nI~~aQ------------------~P---p~ 108 (403)
-||.+|.+.-+...+++-++++ ++.-| |+..+-..++.++ .|-..-. .+ ++
T Consensus 23 ~D~~~Y~~~y~~~~~~~~~~~~--~~~E~-----~~~~l~~~~~~~~-~~~~~~~~i~~~i~~~~~~~~i~~~~~~~~~~ 94 (330)
T PF14897_consen 23 TDYYNYYEIYDEISNNSFNFSE--YGFEP-----GFYLLNYLFSYFG-FNYQFFFFIISFISLFLFFFFIKKYSKNYPIF 94 (330)
T ss_pred ccHHHHHHHHHHHhcccccccc--ccCCH-----HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHhHHHcccchHHH
Confidence 3999999999999887755333 33333 6666666655544 2311111 11 12
Q ss_pred HHHHHh--hhhhhhhhhhhhhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhHHHHH
Q 015618 109 GLSLLC--LSKRVHSIFVLRLFNDCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLFLLL 177 (403)
Q Consensus 109 ~l~ll~--lSKRlHSIfVLRLFND~~a~~~l~~ai~l~~~~~w~~gs~~ySlavSIKMN~LLf~Pallv~l 177 (403)
..+++. ..-=..+...+| -+.|+.++..|+..+.+|||..+..+.-+|..+--.+++++|...+.-
T Consensus 95 ~~~~l~~~~~~~~~~~~~iR---q~~A~~~~~~a~~~~~~~k~~~~~~~~lla~~fH~Saii~l~~~~l~~ 162 (330)
T PF14897_consen 95 LSLFLFFSFFFFFYSFNQIR---QSLAISFFLLALSYLYKKKWIKFILLVLLAILFHYSAIIFLPLYFLSR 162 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 122233444445 367888888888888899998888888899999999999999866555
No 13
>COG5542 Predicted integral membrane protein [Function unknown]
Probab=89.44 E-value=1.2 Score=47.13 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=61.0
Q ss_pred hhhhhhh--cchhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhcChHHHHHHHHHHHHHHHH
Q 015618 122 IFVLRLF--NDCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLFLLLLKALGIFGVISTLASAALVQIL 199 (403)
Q Consensus 122 IfVLRLF--ND~~a~~~l~~ai~l~~~~~w~~gs~~ySlavSIKMN~LLf~Pallv~l~~~~g~~~~~~~l~i~~~vQvl 199 (403)
||.=-+- -|.+=|++..++++++-.++--.+++.+|+|.+.|-|..++.|.+++-+.+... .+.+......+.+|+.
T Consensus 162 i~~s~iw~~teSlf~ll~~l~iyf~~~k~~~~a~~~faLa~l~Rsngi~~~p~fl~~~ik~~~-ik~i~~~l~~~~l~~~ 240 (420)
T COG5542 162 IYNSAIWGQTESLFTLLSILAIYFFSIKKQIPALFFFALATLFRSNGIFLSPLFLIPLIKNRK-IKIIWYLLPSGSLTYL 240 (420)
T ss_pred HhhhhHHhccchHHHHHHHHHHHHHHccchhHHHHHHHHHHHhccchhHHHHHHHHHHHhhhh-HHHhhhhhhhHHHHHH
Confidence 4444444 677888999999999999998999999999999999999999999999998776 4444444444444443
Q ss_pred H
Q 015618 200 F 200 (403)
Q Consensus 200 l 200 (403)
.
T Consensus 241 ~ 241 (420)
T COG5542 241 S 241 (420)
T ss_pred H
Confidence 3
No 14
>KOG2575 consensus Glucosyltransferase - Alg6p [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=88.26 E-value=2.1 Score=45.57 Aligned_cols=186 Identities=25% Similarity=0.364 Sum_probs=116.6
Q ss_pred HHHHHHHhhcccccc-------CHHHH--HHH------hhh-hcccccccccccC-CCCCccccchhHHHHHHHHHH---
Q 015618 36 LLVALIITYVPYTKI-------DWDAY--MSQ------VSG-FLEGERDYSNLKG-DTGPLVYPAGFLYVYSAIQYI--- 95 (403)
Q Consensus 36 ~l~~~II~~VpYTEI-------Dw~AY--Mqq------v~~-~l~Ge~DYs~i~G-dTGPLVYPAGfVyiYs~Ly~l--- 95 (403)
+.....|.--||.-- |++|= -|| |++ +.||+.|=-+--| |--||. |=|=|+....-.-
T Consensus 41 l~~r~~Isl~pYSG~~~PPmyGDyEAQRHWmEIT~nLPv~qWY~n~t~NDLqYWGLDYPPLT--AYhSyl~G~i~~f~NP 118 (510)
T KOG2575|consen 41 LCVRSAISLNPYSGAGSPPMYGDYEAQRHWMEITVNLPVSQWYFNGTHNDLQYWGLDYPPLT--AYHSYLLGIIGNFINP 118 (510)
T ss_pred HHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHhhcCcHHHHhhcCCCCccceecCCCCcHH--HHHHHHHHHHHhhcCh
Confidence 555666777787643 66662 223 333 3577655444444 223332 5666666544321
Q ss_pred ------h--c-ccccccc--------------CChhHHHHHhhh----hhhhhhh-hhhhhcc-------------hhHH
Q 015618 96 ------T--G-GEVYSAQ--------------LPWWGLSLLCLS----KRVHSIF-VLRLFND-------------CFAM 134 (403)
Q Consensus 96 ------T--G-~nI~~aQ--------------~Pp~~l~ll~lS----KRlHSIf-VLRLFND-------------~~a~ 134 (403)
| | |.+..-- +||-++...+++ +.=..++ .+-|+|- |+..
T Consensus 119 ~wvaL~tSRGfES~~hKlfMR~TViisd~liy~Pa~ify~~~~~r~~~~~~~~a~~~~iLl~P~L~LID~GHFQYNsisL 198 (510)
T KOG2575|consen 119 EWVALHTSRGFESIAHKLFMRSTVIISDLLIYLPALIFYFKWLHRTRSKKSKIAYAALILLYPSLLLIDHGHFQYNSISL 198 (510)
T ss_pred hHhhhhccCCcccHHHHHHHHHHHHHHhHHHHhhHHHHHHHHhhhccCcccHHHHHHHHHhCCceEEEecCcceechhHH
Confidence 1 3 2222111 566666555552 2112233 5556653 5566
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhc-------ChHHHHHHHHHHHHHHHHHhcccccc
Q 015618 135 TFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLFLLLLKAL-------GIFGVISTLASAALVQILFGFPFLIS 207 (403)
Q Consensus 135 ~~l~~ai~l~~~~~w~~gs~~ySlavSIKMN~LLf~Pallv~l~~~~-------g~~~~~~~l~i~~~vQvllg~PFL~~ 207 (403)
-+.-.||..+.+++..+||++|++|++-|==.|-++|++..-++.++ ++.+.+.......+.=+++=+||+.+
T Consensus 199 Gl~~~ai~~ll~~~~~~as~~F~LAlnyKQMeLY~A~pfF~fLLg~c~k~k~~~~f~ri~~ia~~Vv~TF~iiw~P~~~~ 278 (510)
T KOG2575|consen 199 GLTLYAIAALLKNFYVLASVLFVLALNYKQMELYHALPFFAFLLGSCLKPKLFNSFARIIKIALAVVGTFVIIWLPFLLS 278 (510)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66677888888999999999999999999889999999988777632 24455555555556667788899864
Q ss_pred --ChHhHhhhccccccee
Q 015618 208 --HPVAYVSRAFNLGRVF 223 (403)
Q Consensus 208 --~p~~Yl~~AFdf~R~F 223 (403)
+-..=+.|-|-|.|--
T Consensus 279 ~~~~~qvl~RlFPf~RGl 296 (510)
T KOG2575|consen 279 GDTALQVLHRLFPFARGL 296 (510)
T ss_pred cchHHHHHHHhCchhcch
Confidence 5778899999999974
No 15
>TIGR03766 conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.
Probab=83.15 E-value=44 Score=35.50 Aligned_cols=129 Identities=17% Similarity=0.188 Sum_probs=79.4
Q ss_pred ccccccCHHHHHHHhhhhcccccccccccCCCCCcccc--chhHHHHHHHHHHhcc-ccccccC--------ChhHHHHH
Q 015618 45 VPYTKIDWDAYMSQVSGFLEGERDYSNLKGDTGPLVYP--AGFLYVYSAIQYITGG-EVYSAQL--------PWWGLSLL 113 (403)
Q Consensus 45 VpYTEIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPLVYP--AGfVyiYs~Ly~lTG~-nI~~aQ~--------Pp~~l~ll 113 (403)
-+.-+=|..+.-++... +++-|+ .|.- -.|| =|++.+.+.++.+.|+ +...+|+ --+.+...
T Consensus 87 ~~~p~~D~~~v~~~A~~--~~~~~~---~~Y~--~~yPnn~g~~l~~~~l~kifg~~~~~~~~llNil~~~~si~liy~i 159 (483)
T TIGR03766 87 HPLIGWDAGAVHTAATK--SNESSI---SNYF--SRNPNNLFLLLFMHFLYKLFGETSWLFFDVVNIVLVDLSALILYKA 159 (483)
T ss_pred CCCcCcCHHHHHHHHhc--CCCccc---Ccee--eECCchHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455688777777763 233333 2222 2455 4788888888888886 7777781 11111111
Q ss_pred h---hhhhh-------------hhhhhhhhhcchhHHHHHHHHHHHHH--hh----hh-----hHHHHHHHhhhhhhhhh
Q 015618 114 C---LSKRV-------------HSIFVLRLFNDCFAMTFLHAALALLL--DQ----RW-----HLGLIIFSVAVSIKMNV 166 (403)
Q Consensus 114 ~---lSKRl-------------HSIfVLRLFND~~a~~~l~~ai~l~~--~~----~w-----~~gs~~ySlavSIKMN~ 166 (403)
. ..+|. ...|..=.-.|.++++++-++++++. .+ ++ -+..++.++|.-+|-|.
T Consensus 160 ~k~lf~~~~a~~a~~l~~l~~~~~~y~~~~Ysd~~~l~~~~l~l~~~~~~~~~~~~~~~~~~~Il~gillal~~~iKp~~ 239 (483)
T TIGR03766 160 VKKVFNKKKAFVALYLFVLLLALSPYILIPYTDTWVLPFVSLFLFLYTVISKKTDLRKKIALSILLGVLLAIAYFIKPSA 239 (483)
T ss_pred HHHHhCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1 11111 22333346689999998888876543 11 11 26778889999999999
Q ss_pred hhhhhhHHHHHHHh
Q 015618 167 LLYAPPLFLLLLKA 180 (403)
Q Consensus 167 LLf~Pallv~l~~~ 180 (403)
+.++||+++..+..
T Consensus 240 iI~liA~~i~~~l~ 253 (483)
T TIGR03766 240 IIFVIAIFIVLFLQ 253 (483)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999877663
No 16
>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains a family of various integral membrane proteins with no known function.
Probab=81.40 E-value=30 Score=36.23 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=88.8
Q ss_pred ccccCHHHHHHHhhhhcccccccccccCCCCCccccchhHHHHHHHHHHh--cccccccc--------CChhHHHHHh--
Q 015618 47 YTKIDWDAYMSQVSGFLEGERDYSNLKGDTGPLVYPAGFLYVYSAIQYIT--GGEVYSAQ--------LPWWGLSLLC-- 114 (403)
Q Consensus 47 YTEIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPLVYPAGfVyiYs~Ly~lT--G~nI~~aQ--------~Pp~~l~ll~-- 114 (403)
++-.|.--|+|.+..+..|+.=++.++|+.-==+--.=-+++..-+|++- ..-+...| +|-|.+.--.
T Consensus 7 ~~~~DlGif~Q~~~~~~~g~~~~~t~~~~~~lg~HfsPil~ll~Ply~l~Ps~~tLli~Qal~la~~~~pl~~lar~~~~ 86 (449)
T PF09852_consen 7 SPSFDLGIFDQAIWSYAHGRAPISTIEGQNHLGDHFSPILYLLAPLYRLFPSPLTLLIVQALLLALGAIPLYRLARRRLL 86 (449)
T ss_pred CCchhHHHHHHHHHHHhCCCCceecccccccccccchHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46679999999999999999889999886110011111145566777776 35677778 1222222222
Q ss_pred -------------hhhhhhhhhhhhhhc---chhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhHHHHHH
Q 015618 115 -------------LSKRVHSIFVLRLFN---DCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLFLLLL 178 (403)
Q Consensus 115 -------------lSKRlHSIfVLRLFN---D~~a~~~l~~ai~l~~~~~w~~gs~~ySlavSIKMN~LLf~Pallv~l~ 178 (403)
+|-=++++ =+|+ ||+++-++..+.+.+.++||...++.--+.+.+|=..-++.-++.+.+.
T Consensus 87 ~~~~a~~~~~~ylL~p~~~~~---~~~dFH~~~~avPll~~~~~~~~~~r~~~~~~~~ll~llvKEd~~l~v~~~gl~~~ 163 (449)
T PF09852_consen 87 SRRLALLIALAYLLSPGLQGA---NLFDFHPVAFAVPLLLWALYALERRRWRLFILWALLLLLVKEDLGLTVAGIGLYLL 163 (449)
T ss_pred CcHHHHHHHHHHHHhHHHHhh---hhCCCcHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23333333 1233 6899888888888999999999999999999999777777777776666
Q ss_pred Hhc
Q 015618 179 KAL 181 (403)
Q Consensus 179 ~~~ 181 (403)
...
T Consensus 164 ~~~ 166 (449)
T PF09852_consen 164 LRR 166 (449)
T ss_pred HhC
Confidence 544
No 17
>PF02366 PMT: Dolichyl-phosphate-mannose-protein mannosyltransferase ; InterPro: IPR003342 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Dolichyl-phosphate-mannose-protein mannosyltransferase proteins 2.4.1.109 from EC belong to the glycosyltransferase family 39 (GT39 from CAZY) and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. The transfer of mannose to seryl and threonyl residues of secretory proteins is catalyzed by a family of protein mannosyltransferases in Saccharomyces cerevisiae coded for by seven genes (PMT1-7). Protein O-glycosylation is essential for cell wall rigidity and cell integrity and this protein modification is vital for S. cerevisiae [].; GO: 0000030 mannosyltransferase activity, 0006493 protein O-linked glycosylation, 0016020 membrane
Probab=75.77 E-value=27 Score=32.90 Aligned_cols=56 Identities=27% Similarity=0.308 Sum_probs=40.7
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHhhh-----------h-hHHHHHHHhhhhhhhhhhhhh-hhHHHHH
Q 015618 122 IFVLRLFNDCFAMTFLHAALALLLDQR-----------W-HLGLIIFSVAVSIKMNVLLYA-PPLFLLL 177 (403)
Q Consensus 122 IfVLRLFND~~a~~~l~~ai~l~~~~~-----------w-~~gs~~ySlavSIKMN~LLf~-Pallv~l 177 (403)
..-...-+|...++++-++++++.+.+ | -++.+.-++|+++|-+.++.. |+.++..
T Consensus 129 ~~sr~~~~D~~l~~f~~la~~~~~~~~~~~~~~~~~~~~~~l~gi~lGla~~~K~~~~~~~~~~~~~~~ 197 (245)
T PF02366_consen 129 VQSRYALLDSILLFFILLAIYCLLRWYRYQPFRRKWWLWLLLAGIALGLAILTKGPGLLLVLPAGLLFL 197 (245)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 333445699999999999999887541 2 267788899999999988654 5554443
No 18
>PF04188 Mannosyl_trans2: Mannosyltransferase (PIG-V)); InterPro: IPR007315 This is a family of eukaryotic ER membrane proteins that are involved in the synthesis of glycosylphosphatidylinositol (GPI), a glycolipid that anchors many proteins to the eukaryotic cell surface. Proteins in this family are involved in transferring the second mannose in the biosynthetic pathway of GPI [], [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=75.30 E-value=8.8 Score=40.44 Aligned_cols=94 Identities=29% Similarity=0.364 Sum_probs=65.9
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhc-------C-hHHHHHHHHH
Q 015618 121 SIFVLRLFNDCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLFLLLLKAL-------G-IFGVISTLAS 192 (403)
Q Consensus 121 SIfVLRLFND~~a~~~l~~ai~l~~~~~w~~gs~~ySlavSIKMN~LLf~Pallv~l~~~~-------g-~~~~~~~l~i 192 (403)
|||.--.-..+.-.++.+.+++++.+++|..+++++++|..+.-|-++.+..+....+... + ..+.+..+..
T Consensus 157 siF~sa~YsEslf~~lsf~gl~~~~~~~~~~a~~~~~la~~~RsnGll~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 236 (443)
T PF04188_consen 157 SIFLSAPYSESLFALLSFAGLYLLERGRWWLAGLLFALATLTRSNGLLLAGFFAYELLGIYYLDLRQLRRQRRLVRALIS 236 (443)
T ss_pred HHHhhcCccHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4566666677778888899999999999999999999999999999998877766655421 1 1223333322
Q ss_pred HHHHHHHHhccccccChHhHhh
Q 015618 193 AALVQILFGFPFLISHPVAYVS 214 (403)
Q Consensus 193 ~~~vQvllg~PFL~~~p~~Yl~ 214 (403)
..+-=.+++.||+..+-.+|-.
T Consensus 237 ~~l~~~~i~~pf~~~q~~~y~~ 258 (443)
T PF04188_consen 237 AILSGLLIFLPFVLFQYYAYYR 258 (443)
T ss_pred hhhhhHHHHHHHHHHHHHHHhh
Confidence 2222346788998866555543
No 19
>TIGR03663 conserved hypothetical protein TIGR03663. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with Pfam family pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.
Probab=74.87 E-value=1.2e+02 Score=32.15 Aligned_cols=118 Identities=21% Similarity=0.195 Sum_probs=69.1
Q ss_pred ccCHH--HHHHHh-hhhcccccccccccCCCCCccccchhHHHHHHHHHHhccccccccCChhHHHHHh-----h-hhhh
Q 015618 49 KIDWD--AYMSQV-SGFLEGERDYSNLKGDTGPLVYPAGFLYVYSAIQYITGGEVYSAQLPWWGLSLLC-----L-SKRV 119 (403)
Q Consensus 49 EIDw~--AYMqqv-~~~l~Ge~DYs~i~GdTGPLVYPAGfVyiYs~Ly~lTG~nI~~aQ~Pp~~l~ll~-----l-SKRl 119 (403)
-+||+ .|-+.. |+..+|+.+|.-. .+||+.| |+=...+.+-|.+-..+-+||-++-+++ + .+++
T Consensus 23 ~~~~DEa~ya~~a~~ml~~g~~~~~p~--~h~Pll~-----wl~A~~~~lFG~se~a~RL~~aL~g~~v~l~~~~~r~~~ 95 (439)
T TIGR03663 23 VFHHDEAIHASFILKLLETGVYSYDPA--YHGPFLY-----HITAAVFHLFGISDATARLLPAVFGVLLPLTAWLYRKRL 95 (439)
T ss_pred CCCCCchhHHHHHHHHHhcCCCCcCCC--CCCCHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35555 344434 5566788877533 2467642 4444455555765444445554332211 1 1111
Q ss_pred h-----------------hhhhhhhhcchhHHHHHHHHHHHHHh-------hhhhHHHHHHHhhhhhhhhhhhhhhhH
Q 015618 120 H-----------------SIFVLRLFNDCFAMTFLHAALALLLD-------QRWHLGLIIFSVAVSIKMNVLLYAPPL 173 (403)
Q Consensus 120 H-----------------SIfVLRLFND~~a~~~l~~ai~l~~~-------~~w~~gs~~ySlavSIKMN~LLf~Pal 173 (403)
. -.+-.-..+|...++++-++++++.+ +.+.++.+..++|+..|-+++++.+.+
T Consensus 96 ~~~~al~AAllla~sp~~~~~sr~~~~D~~l~~f~~lal~~l~r~~~~~~~~~~~lag~~~gLa~ltKg~~~l~~~~~ 173 (439)
T TIGR03663 96 GDNEVLWAAVLLAFSPVMVYYSRFMRNDIFVAFFTLLAVGAAFRYLDTGKRRYLFLAASALALAFTSKENAYLIILIF 173 (439)
T ss_pred CcHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 01122256899999999888888763 224478899999999999988877554
No 20
>KOG2576 consensus Glucosyltransferase - Alg8p [Transcription]
Probab=71.55 E-value=15 Score=39.34 Aligned_cols=101 Identities=27% Similarity=0.394 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhHHHHHHH----hcC------hHHHHHHHHHHHHHHHHH
Q 015618 131 CFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLFLLLLK----ALG------IFGVISTLASAALVQILF 200 (403)
Q Consensus 131 ~~a~~~l~~ai~l~~~~~w~~gs~~ySlavSIKMN~LLf~Pallv~l~~----~~g------~~~~~~~l~i~~~vQvll 200 (403)
++-.-.+-.||...+++|..+++.+||..+--|-=-|-+|||..+-++. ..| ..+.+....+...+=.+-
T Consensus 158 gfLfgilLlSI~~l~~kr~l~~A~~fsvll~FKHIflY~ApaY~vylLr~Yc~~~nn~~~~~~~~vikL~~vv~~~F~~s 237 (500)
T KOG2576|consen 158 GFLFGILLLSIVFLKTKRYLLSAFLFSVLLNFKHIFLYVAPAYFVYLLRNYCLTSNNVFLANFLNVIKLGIVVLIPFAAS 237 (500)
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhheeeechhHHHHHHHHHHhcccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 4555667778888889999999999999999999999999998877654 222 233333333333322233
Q ss_pred hccccccC-hHhHhhhcccccceeeEe-eeeee
Q 015618 201 GFPFLISH-PVAYVSRAFNLGRVFIHF-WSVNF 231 (403)
Q Consensus 201 g~PFL~~~-p~~Yl~~AFdf~R~Fl~k-WTVNW 231 (403)
=.||+-.+ --.=++|-|-|||-..|- |-=|+
T Consensus 238 ~gPf~~~~qlpqvlSRLFPfsRGLtHAYWAPNF 270 (500)
T KOG2576|consen 238 FGPFIYVQQLPQVLSRLFPFSRGLTHAYWAPNF 270 (500)
T ss_pred hccHHHHHHhHHHHHHhCCcccccchhhccchH
Confidence 34655433 345678999999998884 66664
No 21
>PF06728 PIG-U: GPI transamidase subunit PIG-U; InterPro: IPR009600 Many eukaryotic proteins are anchored to the cell surface via glycosylphosphatidylinositol (GPI), which is posttranslationally attached to the C terminus by GPI transamidase. The mammalian GPI transamidase is a complex of at least four subunits, GPI8, GAA1, PIG-S, and PIG-T. PIG-U is thought to represent a fifth subunit in this complex and may be involved in the recognition of either the GPI attachment signal or the lipid portion of GPI [].; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=70.42 E-value=17 Score=37.59 Aligned_cols=88 Identities=20% Similarity=0.340 Sum_probs=65.1
Q ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhHHHHHHH---------hcC---hHHHHH-HHHHHHHH
Q 015618 130 DCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLFLLLLK---------ALG---IFGVIS-TLASAALV 196 (403)
Q Consensus 130 D~~a~~~l~~ai~l~~~~~w~~gs~~ySlavSIKMN~LLf~Pallv~l~~---------~~g---~~~~~~-~l~i~~~v 196 (403)
|.+..+++-.+++...+++...+++..++|.-..++-.+.+|.++..+.. ..+ ..+.+. .+..++.+
T Consensus 146 ~~f~nl~i~~sl~~a~~g~~~~s~i~lAlatylSlYpi~Ll~Plll~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 225 (382)
T PF06728_consen 146 TVFTNLFILLSLYFAVKGNVFLSAISLALATYLSLYPILLLPPLLLLLYSSWKQSKSKNSSKSSKWSSFLQILLIFIASL 225 (382)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhccccccccccHHHHHHHHHHHHHHHH
Confidence 67778888888998899999999999999999999999988888877766 111 233333 23344455
Q ss_pred HHHHhccccccChHhHhhhcc
Q 015618 197 QILFGFPFLISHPVAYVSRAF 217 (403)
Q Consensus 197 Qvllg~PFL~~~p~~Yl~~AF 217 (403)
.+++.+.|+..+.|+++.+.+
T Consensus 226 ~~L~~~S~~~~~sw~fl~~ty 246 (382)
T PF06728_consen 226 AALLLLSYLITGSWNFLDSTY 246 (382)
T ss_pred HHHHHHHHHHcCChHHHHHHH
Confidence 666667787777777776654
No 22
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=49.05 E-value=45 Score=37.88 Aligned_cols=75 Identities=28% Similarity=0.460 Sum_probs=51.6
Q ss_pred chhHHHHHHHHHHHHHh----------hhhh----HHHHHHHhhhhhhhhhhhhhhhHHHHHHH---------hcChHHH
Q 015618 130 DCFAMTFLHAALALLLD----------QRWH----LGLIIFSVAVSIKMNVLLYAPPLFLLLLK---------ALGIFGV 186 (403)
Q Consensus 130 D~~a~~~l~~ai~l~~~----------~~w~----~gs~~ySlavSIKMN~LLf~Pallv~l~~---------~~g~~~~ 186 (403)
|...++++-++++++.+ .+|. +.++.-|+|+|+|+=-++-.=.+++.... +....+.
T Consensus 174 Ds~Llff~~~~~y~~~r~~~~~~~pfs~~W~~wL~~tGvsLgcaiSvK~vGlft~~~Vgl~~v~~LW~Ll~D~~~s~~~~ 253 (723)
T KOG3359|consen 174 DSMLLFFMAAAVYCFVRFYTQRKRPFSLRWWKWLLLTGVSLGCAISVKYVGLFTIALVGLYTVRELWCLLGDLGLSIKQI 253 (723)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhhheeehhhhhHHHHHHHHHHHHHHHHHHHhhcCCcHHHH
Confidence 89999999999999874 1233 56788899999999877765555544322 2335556
Q ss_pred HHHHHHHHHHHHHHhccccc
Q 015618 187 ISTLASAALVQILFGFPFLI 206 (403)
Q Consensus 187 ~~~l~i~~~vQvllg~PFL~ 206 (403)
+.+++.++.. ++++||+.
T Consensus 254 ~kh~~ar~~~--LI~iP~~i 271 (723)
T KOG3359|consen 254 VKHLLARLFF--LIGIPFLI 271 (723)
T ss_pred HHHHHHHHHH--HHHHHHHH
Confidence 6665555443 67889765
No 23
>PRK13279 arnT 4-amino-4-deoxy-L-arabinose transferase; Provisional
Probab=41.21 E-value=5.3e+02 Score=28.47 Aligned_cols=158 Identities=15% Similarity=0.151 Sum_probs=84.4
Q ss_pred HhhccccccCHHHHHHHhhhh-ccccccccccc----CCCCCccccchhHHHHHHHHHHhccccccccCChhHHHHH---
Q 015618 42 ITYVPYTKIDWDAYMSQVSGF-LEGERDYSNLK----GDTGPLVYPAGFLYVYSAIQYITGGEVYSAQLPWWGLSLL--- 113 (403)
Q Consensus 42 I~~VpYTEIDw~AYMqqv~~~-l~Ge~DYs~i~----GdTGPLVYPAGfVyiYs~Ly~lTG~nI~~aQ~Pp~~l~ll--- 113 (403)
..-.+-.+-|=..|.|-.+.. .+|+.=--.+- =|..|+.| |+=.+.+++.|.|-..+-+|.-+...+
T Consensus 23 L~~r~lw~~DE~ryA~iareMl~sGdWlvP~~~g~~y~eKPPL~y-----Wl~Als~~LFG~~~~a~RLpsaL~~~lt~l 97 (552)
T PRK13279 23 LNTRLLWQPDETRYAEISREMLASGDWIVPHFLGLRYFEKPIAGY-----WINSIGQWLFGDNNFGVRFGSVFSTLLSAL 97 (552)
T ss_pred hcCCCCCCCchHHHHHHHHHHHHhCCcCccccCCCcCCCCCcHHH-----HHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 334445566777888877654 46632111112 24555544 888888888887655555555433211
Q ss_pred -h--hhhhhh-h----------------hhhhhhhc--chhHHHHHHHHHHHHH---h-----hh---hhHHHHHHHhhh
Q 015618 114 -C--LSKRVH-S----------------IFVLRLFN--DCFAMTFLHAALALLL---D-----QR---WHLGLIIFSVAV 160 (403)
Q Consensus 114 -~--lSKRlH-S----------------IfVLRLFN--D~~a~~~l~~ai~l~~---~-----~~---w~~gs~~ySlav 160 (403)
+ +.+|+. + ++...-.+ |+..++++.+|+..+. + ++ |.+..+.-++|+
T Consensus 98 lvy~larrl~~~r~~AllAaLIlls~~~v~~~g~~a~~D~~l~~fi~lal~~f~~~~~~~~~~~~~~~~lllGla~Glg~ 177 (552)
T PRK13279 98 LVYWLALRLWRDRRTALLAALIYLSLFLVYGIGTYAVLDPMITLWLTAAMCSFWLALQAQTRRGKIGGYLLLGLACGMGF 177 (552)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHH
Confidence 1 345542 1 11111123 8877777777765442 1 12 334445668888
Q ss_pred hhhhhhhhhhhhHHHHHHH--hcChHHHHHHHHHHHHHHHHHhccc
Q 015618 161 SIKMNVLLYAPPLFLLLLK--ALGIFGVISTLASAALVQILFGFPF 204 (403)
Q Consensus 161 SIKMN~LLf~Pallv~l~~--~~g~~~~~~~l~i~~~vQvllg~PF 204 (403)
=.|-.+-+.+|++.++.+. .....+......+..++=+++++|.
T Consensus 178 LTKG~ial~lP~l~il~~ll~~rr~~~ll~~~~l~llvalli~lPW 223 (552)
T PRK13279 178 MTKGFLALAVPVISVLPWVIWQKRWKELLIYGPLAVLSAVLVSLPW 223 (552)
T ss_pred HhcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999898899977655443 2334333333222333344455554
No 24
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=41.06 E-value=67 Score=30.23 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=29.7
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhcC
Q 015618 149 WHLGLIIFSVAVSIKMNVLLYAPPLFLLLLKALG 182 (403)
Q Consensus 149 w~~gs~~ySlavSIKMN~LLf~Pallv~l~~~~g 182 (403)
..+++.+..+|+++-+-.++.+|++..+++.+..
T Consensus 138 l~l~afl~GLs~g~H~~~ll~lP~~~~~~~~~~~ 171 (178)
T PF11028_consen 138 LLLIAFLCGLSLGVHLLNLLALPAIALLYFFKRY 171 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3478999999999999999999999998887654
No 25
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=40.49 E-value=18 Score=31.91 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=47.2
Q ss_pred HHHHhhccccccCHHHHHHHhhhhcccccccccccCCCCCccccchhHHHHHHHHHHh-cccccccc
Q 015618 39 ALIITYVPYTKIDWDAYMSQVSGFLEGERDYSNLKGDTGPLVYPAGFLYVYSAIQYIT-GGEVYSAQ 104 (403)
Q Consensus 39 ~~II~~VpYTEIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPLVYPAGfVyiYs~Ly~lT-G~nI~~aQ 104 (403)
+-++|.|.--||| ||+.+.+-..|-..+.|+--||=|-|-+=.+=-.=|.+. |.||..--
T Consensus 4 ~~~~W~vkNG~~D------eVk~~v~~g~nVn~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kD 64 (117)
T KOG4214|consen 4 MSVAWNVKNGEID------EVKQSVNEGLNVNEIYGGRTPLHYAADYGQLSILEFLISIGANIQDKD 64 (117)
T ss_pred hhHhhhhccCcHH------HHHHHHHccccHHHHhCCcccchHhhhcchHHHHHHHHHhccccCCcc
Confidence 3578888889988 899887544899999999999999998877644444455 99987654
No 26
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=39.47 E-value=9.9 Score=38.04 Aligned_cols=28 Identities=25% Similarity=0.511 Sum_probs=22.5
Q ss_pred cCCCChhHHHHH----HHHhHhhcccCCCchH
Q 015618 340 RTPFPTLLRLIL----FMGVELCWNVYPSNIY 367 (403)
Q Consensus 340 ~t~~p~~~~~~~----~~~~E~~WNvyPST~~ 367 (403)
.+++|.+++-++ +.++|-|||.||-+-+
T Consensus 64 ~sklP~wir~~~P~~al~v~EkaWNaYPy~~T 95 (258)
T cd08888 64 QSKVPGFVRMLAPEGSLEIHEKAWNAYPYCRT 95 (258)
T ss_pred cccchhHHHHhCCCcceEEehhhhcCCCceEE
Confidence 567788887665 6789999999998765
No 27
>cd09071 FAR_C C-terminal domain of fatty acyl CoA reductases. C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear.
Probab=39.44 E-value=11 Score=30.48 Aligned_cols=24 Identities=33% Similarity=0.703 Sum_probs=16.9
Q ss_pred hhccccccCHHHHHHHhhhhccccccc
Q 015618 43 TYVPYTKIDWDAYMSQVSGFLEGERDY 69 (403)
Q Consensus 43 ~~VpYTEIDw~AYMqqv~~~l~Ge~DY 69 (403)
-..-.++|||+.|++.+ .-|-+.|
T Consensus 67 F~fD~~~idW~~Y~~~~---~~G~r~y 90 (92)
T cd09071 67 FNFDIRSIDWDDYFENY---IPGLRKY 90 (92)
T ss_pred CCCCCCCCCHHHHHHHH---HHHHHHH
Confidence 34567899999999876 4454444
No 28
>COG4346 Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=36.98 E-value=1.1e+02 Score=32.57 Aligned_cols=69 Identities=23% Similarity=0.220 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhcChHHHHHHHHHH-HHHHHHHhccc
Q 015618 136 FLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLFLLLLKALGIFGVISTLASA-ALVQILFGFPF 204 (403)
Q Consensus 136 ~l~~ai~l~~~~~w~~gs~~ySlavSIKMN~LLf~Pallv~l~~~~g~~~~~~~l~i~-~~vQvllg~PF 204 (403)
|..++++++.++|-.++.+.-.+|-|+||+.-.-+|-+-+......++.+-+....++ +.+=++.-.|-
T Consensus 215 FtaL~~~fl~~~R~l~sgiAlGLAAs~K~SG~~vfpil~~~~l~~~~~k~~~iagilip~~vfll~~~Pi 284 (438)
T COG4346 215 FTALFMYFLANDRPLWSGIALGLAASVKLSGAFVFPILWYAILKENDLKERFIAGILIPALVFLLPEIPI 284 (438)
T ss_pred HHHHHHHHHhcCCeehHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHhhhhHhhHHHHhcccHH
Confidence 3444455666788889999999999999999888899988888888877776655444 34444444443
No 29
>COG3463 Predicted membrane protein [Function unknown]
Probab=31.26 E-value=4.6e+02 Score=28.59 Aligned_cols=141 Identities=21% Similarity=0.249 Sum_probs=89.2
Q ss_pred HHHHHHHhhccccccCHHHHHHHhhhhcccccccccccCC-CCCccc--cchhHHHHHHHHHHh--------cccccccc
Q 015618 36 LLVALIITYVPYTKIDWDAYMSQVSGFLEGERDYSNLKGD-TGPLVY--PAGFLYVYSAIQYIT--------GGEVYSAQ 104 (403)
Q Consensus 36 ~l~~~II~~VpYTEIDw~AYMqqv~~~l~Ge~DYs~i~Gd-TGPLVY--PAGfVyiYs~Ly~lT--------G~nI~~aQ 104 (403)
..+...-+--.+|--|=-=|||-++.-.+|+.=|+..++. |++-|+ |+-|+ +|- +|++- =|+|..|=
T Consensus 23 ~~~v~ky~sf~~ta~DLGI~sq~l~~~~~Gk~~Y~t~~~~~~~f~vhfqpilfL-lyP-~Y~l~Psp~~Lll~Q~i~ial 100 (458)
T COG3463 23 YYSVVKYWSFNSTALDLGIFSQSLYTTSHGKLFYNTVEFQLTHFGVHFQPILFL-LYP-FYKLFPSPETLLLIQAIAIAL 100 (458)
T ss_pred HHHHHHhhhhcceeechHHHHHHHHHHhCCeeeccchhhhcccceeehhhHHHH-HHH-HHHhCCcHHHHHHHHHHHHHH
Confidence 3444455566889999999999999999999999999999 998654 33222 111 34433 22232221
Q ss_pred --CChhHHH--------------HH-hhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhhh
Q 015618 105 --LPWWGLS--------------LL-CLSKRVHSIFVLRLFNDCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNVL 167 (403)
Q Consensus 105 --~Pp~~l~--------------ll-~lSKRlHSIfVLRLFND~~a~~~l~~ai~l~~~~~w~~gs~~ySlavSIKMN~L 167 (403)
.|-|.+. .+ .++-=+|+|..---==-.+|..++..|++.+.+++|.++-+.--+-++.|=-+.
T Consensus 101 s~~p~y~lA~eil~~E~~al~isilYll~p~i~gi~~FDFH~m~~avp~~~~a~~f~~r~k~~l~li~lvlIl~tk~~a~ 180 (458)
T COG3463 101 SSLPIYLLAKEILNGEKEALAISILYLLNPYIEGINLFDFHPMAFAVPLFLLAYYFLKRKKWKLFLIFLVLILLTKEDAF 180 (458)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhchhccCchhhhcchHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcccH
Confidence 2322221 11 134445555432111235777888999999999999999998888888886555
Q ss_pred hhhhhHHHHHH
Q 015618 168 LYAPPLFLLLL 178 (403)
Q Consensus 168 Lf~Pallv~l~ 178 (403)
+..=.+++..-
T Consensus 181 liiIsl~i~~~ 191 (458)
T COG3463 181 LIIISLLIWLR 191 (458)
T ss_pred HHHHHHHHHHH
Confidence 54444444433
No 30
>cd07815 SRPBCC_PITP Lipid-binding SRPBCC domain of Class I and Class II Phosphatidylinositol Transfer Proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of the phosphatidylinositol transfer protein (PITP) family of lipid transfer proteins. This family of proteins includes Class 1 PITPs (PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator and related proteins), Class IIA PITPs (PITPNM1/PITPalphaI/Nir2, PITPNM2/PITPalphaII/Nir3, Drosophila RdgB, and related proteins), and Class IIB PITPs (PITPNC1/RdgBbeta and related proteins). The PITP family belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns
Probab=31.04 E-value=15 Score=36.72 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=21.9
Q ss_pred cCCCChhHHHHH----HHHhHhhcccCCCchH
Q 015618 340 RTPFPTLLRLIL----FMGVELCWNVYPSNIY 367 (403)
Q Consensus 340 ~t~~p~~~~~~~----~~~~E~~WNvyPST~~ 367 (403)
.+++|.+++-++ +.++|-|||.||=+-+
T Consensus 64 ~sklP~w~~~~~P~~al~v~EkaWNaYPy~~T 95 (251)
T cd07815 64 GSKLPSWLRALAPKSALTIEEKSWNAYPYCKT 95 (251)
T ss_pred cccchhHHHHhCCccceEEEhhhhCCCCceeE
Confidence 466777776554 6789999999998764
No 31
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=30.86 E-value=1.5e+02 Score=30.39 Aligned_cols=68 Identities=21% Similarity=0.279 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHHHhhhhHHhhcCCCChhHHHHHHHHhHhhccc--C--CCchHHHHHHHHHHHHH
Q 015618 306 TTMFAGNFIGIVCARSLHYQFYLWYFYSLPYLLWRTPFPTLLRLILFMGVELCWNV--Y--PSNIYSSLLLLCLHLVI 379 (403)
Q Consensus 306 ~~l~tsNfIGi~fARSLHYQFy~WY~~tlP~LLw~t~~p~~~~~~~~~~~E~~WNv--y--PST~~SS~~L~~~~~~l 379 (403)
.++++||.+||+.=||+ |...+=.-.-.|+|-+.. ..++.++..+..... + .|+..|-++..++....
T Consensus 221 ~iV~tsnifaIlgLR~l-yf~l~~ll~rf~~L~~~~-----a~iL~fIGvkmll~~~~~~~ip~~~sl~vi~~~l~~~ 292 (302)
T TIGR03718 221 FIVFTSNIFAILGLRSL-YFLLAGLLERFHYLKYGL-----AVILVFIGVKMLLHATDVYHIPIGVSLGVIVGILAVS 292 (302)
T ss_pred eEEehHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHhhcCcCCCChhHHHHHHHHHHHHH
Confidence 46889999999999999 444555566677775542 334455555555442 2 56666666655554433
No 32
>KOG2446 consensus Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=27.06 E-value=42 Score=36.42 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=25.6
Q ss_pred CHHHHHHHhhhhccc---ccccccccCCCCCccc
Q 015618 51 DWDAYMSQVSGFLEG---ERDYSNLKGDTGPLVY 81 (403)
Q Consensus 51 Dw~AYMqqv~~~l~G---e~DYs~i~GdTGPLVY 81 (403)
-+.+|.||.+|=-|| +||=.-..-+|||+||
T Consensus 348 rF~~YlQQ~~MESnGK~vt~~g~~v~~~tG~ivw 381 (546)
T KOG2446|consen 348 RFAAYLQQLSMESNGKEVTRDGNPVNYSTGLIVW 381 (546)
T ss_pred HHHHHHHHhhhhhcCceeecCCccccccccceee
Confidence 588999999999888 4665566667999998
No 33
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=26.50 E-value=1.1e+02 Score=25.86 Aligned_cols=28 Identities=21% Similarity=0.476 Sum_probs=24.5
Q ss_pred hccccccCHHHHHHHhhhhccccccccc
Q 015618 44 YVPYTKIDWDAYMSQVSGFLEGERDYSN 71 (403)
Q Consensus 44 ~VpYTEIDw~AYMqqv~~~l~Ge~DYs~ 71 (403)
-=||..+-=++.-++.|++..|+.||+.
T Consensus 53 lDPYssmPtStW~d~~eglekGqFdyaL 80 (81)
T PF11057_consen 53 LDPYSSMPTSTWTDHKEGLEKGQFDYAL 80 (81)
T ss_pred cChhhcCCcchhhhhhhhhhcccccccc
Confidence 3599999888888999999999999974
No 34
>cd08889 SRPBCC_PITPNM1-2_like Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs). This subgroup includes an N-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class II phosphatidylinositol transfer protein (PITPs), PITPNM1/PITPalphaI/Nir2 (PYK2 N-terminal domain-interacting receptor2) and PITPNM2/PITPalphaII/Nir3), Drosophila RdgB, and related proteins. These are membrane associated multidomain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Ablation of the mouse gene en
Probab=25.76 E-value=23 Score=35.51 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=21.1
Q ss_pred cCCCChhHHHHH----HHHhHhhcccCCCchH
Q 015618 340 RTPFPTLLRLIL----FMGVELCWNVYPSNIY 367 (403)
Q Consensus 340 ~t~~p~~~~~~~----~~~~E~~WNvyPST~~ 367 (403)
.+++|.+++-++ +.++|-|||.||=|-+
T Consensus 66 ~sklP~wl~~~~P~~al~v~EkaWNaYPy~~T 97 (260)
T cd08889 66 GSHIPGWFRAILPKSALRVEEEAWNAYPYTRT 97 (260)
T ss_pred cccChHHHHHhCCCcceEEehhHhCCCCceEE
Confidence 456777776554 4689999999998764
No 35
>cd08890 SRPBCC_PITPNC1_like Lipid-binding SRPBCC domain of mammalian PITPNC1,and related proteins (Class IIB PITPs). This subgroup includes the N-terminal SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain of mammalian Class IIB phosphatidylinositol transfer protein (PITP), PITPNC1/RdgBbeta, and related proteins. These are metazoan proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Mammalian PITPNC1 contains an amino-terminal SRPBCC PITP-like domain and a short carboxyl-terminal domain. It is a cytoplasmic protein, and is ubiquitously
Probab=25.30 E-value=23 Score=35.40 Aligned_cols=28 Identities=32% Similarity=0.679 Sum_probs=18.3
Q ss_pred cCCCChhHHHHH---HHHhHhhcccCCCchH
Q 015618 340 RTPFPTLLRLIL---FMGVELCWNVYPSNIY 367 (403)
Q Consensus 340 ~t~~p~~~~~~~---~~~~E~~WNvyPST~~ 367 (403)
.+++|.+++-++ +.++|-|||.||=|-+
T Consensus 64 ~sklP~w~r~~~P~~l~v~EkaWNaYPy~~T 94 (250)
T cd08890 64 NSRLPSWARAVVPKIFYVTEKAWNYYPYTIT 94 (250)
T ss_pred cccChhHHHHhCCcceEEehhhhccCCceee
Confidence 345555554332 3579999999997654
No 36
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=24.96 E-value=58 Score=21.96 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=15.2
Q ss_pred hhhhhhhhhhhhcchhHHHHHHHHH
Q 015618 117 KRVHSIFVLRLFNDCFAMTFLHAAL 141 (403)
Q Consensus 117 KRlHSIfVLRLFND~~a~~~l~~ai 141 (403)
+|+|+ .|+|-+|.+++..++
T Consensus 2 ~~LH~-----w~~~i~al~~lv~~i 21 (27)
T PF03929_consen 2 NDLHK-----WFGDIFALFMLVFAI 21 (27)
T ss_pred hHHHH-----HHHHHHHHHHHHHHH
Confidence 58888 778888877776665
No 37
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=22.20 E-value=1.7e+02 Score=33.45 Aligned_cols=47 Identities=30% Similarity=0.360 Sum_probs=35.3
Q ss_pred hcchhHHHHHHHHHHHHHh--------hhhh----HHHHHHHhhhhhhhhhhhhhhhHH
Q 015618 128 FNDCFAMTFLHAALALLLD--------QRWH----LGLIIFSVAVSIKMNVLLYAPPLF 174 (403)
Q Consensus 128 FND~~a~~~l~~ai~l~~~--------~~w~----~gs~~ySlavSIKMN~LLf~Pall 174 (403)
..|...++|+.++++++.+ ++|. +..+..++|+|+|++-++-.=.++
T Consensus 162 LLDs~LlfF~~~~~y~~~r~~~~~p~s~~w~~~Ll~tGisLGcaiS~KwvGlft~~~vg 220 (699)
T COG1928 162 LLDSFLLFFIVAAAYCFLRFHRQQPFSRRWLKWLLLTGISLGCAISVKWVGLFTTGVVG 220 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHhcceeeeEEEeeehhHHHHHHHH
Confidence 3799999999999998863 3444 566889999999999755443333
No 38
>KOG2515 consensus Mannosyltransferase [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.72 E-value=3.8e+02 Score=29.72 Aligned_cols=75 Identities=21% Similarity=0.283 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHhhhhh--HHHHHHHhhhhhhhhhhhhhhhHHHHHHHhcChHHHHHHHHHHHHHHHHHhccccccC
Q 015618 132 FAMTFLHAALALLLDQRWH--LGLIIFSVAVSIKMNVLLYAPPLFLLLLKALGIFGVISTLASAALVQILFGFPFLISH 208 (403)
Q Consensus 132 ~a~~~l~~ai~l~~~~~w~--~gs~~ySlavSIKMN~LLf~Pallv~l~~~~g~~~~~~~l~i~~~vQvllg~PFL~~~ 208 (403)
++|.+..+|.-....++|. ++++..|.-+|=--.++|.+|-++-.+..+.+++.++..-..|.++-+ |.|=+.++
T Consensus 151 F~M~~~~~al~a~l~~n~~~av~~~a~gailGWPFsa~l~lPi~~~lll~k~r~k~~F~~~~l~~~~~~--~v~~i~~D 227 (568)
T KOG2515|consen 151 FAMYLTVLALGAWLTENYTKAVAYVAIGAILGWPFSALLGLPILLELLLLKHRFKSTFITWFLCILILL--LVPVIVTD 227 (568)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHh--ccceEEEe
Confidence 4555555555555566766 667777777788899999999555555556678887888777777644 55544444
No 39
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=21.25 E-value=2.5e+02 Score=23.78 Aligned_cols=47 Identities=28% Similarity=0.414 Sum_probs=30.7
Q ss_pred hcchhHHHHHHHHHH------------HHHhhhhhHHHHHHHhhhhhhhhhhhhhhhHHHH
Q 015618 128 FNDCFAMTFLHAALA------------LLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLFLL 176 (403)
Q Consensus 128 FND~~a~~~l~~ai~------------l~~~~~w~~gs~~ySlavSIKMN~LLf~Pallv~ 176 (403)
.+|...++..|+++- ..+++||+..+-+=- ..+=|=+.+|.||+++.
T Consensus 11 ~~~~l~vl~~y~~l~~~YLlVvP~~l~~wm~~RWy~~~~~Er--~~~y~lvF~FFPGllL~ 69 (81)
T PF10716_consen 11 PSDTLLVLLAYAALAGLYLLVVPLILYFWMNKRWYVMSSFER--LFMYFLVFLFFPGLLLL 69 (81)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHH
Confidence 577777777776553 446899997654321 11335678899998765
Done!