Query 015618
Match_columns 403
No_of_seqs 121 out of 211
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 15:44:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gio_A Putative lipoprotein; u 16.6 12 0.0004 31.3 -2.5 11 319-330 49-59 (107)
2 3a5f_A Dihydrodipicolinate syn 14.5 62 0.0021 30.5 1.6 52 45-96 12-67 (291)
3 3n7x_A Capsid protein; icosahe 13.4 57 0.0019 30.8 1.0 32 45-76 183-217 (329)
4 2wkj_A N-acetylneuraminate lya 12.1 1E+02 0.0034 29.3 2.3 50 45-94 21-75 (303)
5 2pcq_A Putative dihydrodipicol 11.8 1.2E+02 0.0042 28.4 2.8 32 46-78 9-43 (283)
6 1xky_A Dihydrodipicolinate syn 10.8 1.2E+02 0.004 28.8 2.3 51 46-96 23-78 (301)
7 2nuw_A 2-keto-3-deoxygluconate 10.3 1.2E+02 0.0043 28.4 2.3 33 46-78 10-45 (288)
8 3b4u_A Dihydrodipicolinate syn 10.2 1.3E+02 0.0043 28.4 2.3 48 46-93 14-66 (294)
9 2ojp_A DHDPS, dihydrodipicolin 10.1 1.1E+02 0.0039 28.7 1.9 50 46-95 12-66 (292)
10 1ha8_A Pheromone, ER-23; NMR { 9.8 84 0.0029 22.8 0.7 23 62-84 7-34 (51)
No 1
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=16.58 E-value=12 Score=31.27 Aligned_cols=11 Identities=27% Similarity=0.788 Sum_probs=9.1
Q ss_pred hcccchhhHHHH
Q 015618 319 ARSLHYQFYLWY 330 (403)
Q Consensus 319 ARSLHYQFy~WY 330 (403)
.+.|||+|| ||
T Consensus 49 ~~~l~Yrf~-Wy 59 (107)
T 4gio_A 49 AKDVIYKVD-WL 59 (107)
T ss_dssp CEEEEEEEE-EE
T ss_pred ceEEEEEEE-EE
Confidence 578999998 66
No 2
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=14.45 E-value=62 Score=30.48 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=36.1
Q ss_pred ccccc--cCHHHHHHHhhhhcccccccccccCCCCC--ccccchhHHHHHHHHHHh
Q 015618 45 VPYTK--IDWDAYMSQVSGFLEGERDYSNLKGDTGP--LVYPAGFLYVYSAIQYIT 96 (403)
Q Consensus 45 VpYTE--IDw~AYMqqv~~~l~Ge~DYs~i~GdTGP--LVYPAGfVyiYs~Ly~lT 96 (403)
-|+|| ||++++-+.++-..++..|---+-|.||= ..=++=..-+-...-...
T Consensus 12 TPf~~dgiD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~ 67 (291)
T 3a5f_A 12 TPFTNTGVDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKV 67 (291)
T ss_dssp CCBCSSSBCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHH
T ss_pred cCcCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHh
Confidence 37776 99999999999988777888777887763 333444555555444333
No 3
>3n7x_A Capsid protein; icosahedral virus capsid, virus-like particle, capsid protei barrel, parvovirus; 2.50A {Infectious hypodermal and hematopoietinecrosis virus}
Probab=13.37 E-value=57 Score=30.79 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=20.5
Q ss_pred ccccccCHHHHHHHh---hhhcccccccccccCCC
Q 015618 45 VPYTKIDWDAYMSQV---SGFLEGERDYSNLKGDT 76 (403)
Q Consensus 45 VpYTEIDw~AYMqqv---~~~l~Ge~DYs~i~GdT 76 (403)
|.-|.-.++.=+||. |+...|+|.--.|.|||
T Consensus 183 vqstaanyedpiqqfgfmeqmrtgdrkaytihgdt 217 (329)
T 3n7x_A 183 VQSTAANYEDPIQQFGFMEQMRTGDRKAYTIHGDT 217 (329)
T ss_dssp SCTTCCSTTHHHHHCSEEEEECTTCEEEEEEECCC
T ss_pred EeeccccccCHHHHhhHHHHhhcCCceeEEecccc
Confidence 556777788778875 44556777555555553
No 4
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=12.08 E-value=1e+02 Score=29.32 Aligned_cols=50 Identities=16% Similarity=0.079 Sum_probs=35.5
Q ss_pred cccc---ccCHHHHHHHhhhhcccccccccccCCCCCc--cccchhHHHHHHHHH
Q 015618 45 VPYT---KIDWDAYMSQVSGFLEGERDYSNLKGDTGPL--VYPAGFLYVYSAIQY 94 (403)
Q Consensus 45 VpYT---EIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPL--VYPAGfVyiYs~Ly~ 94 (403)
-|+| +||++++-+.++-..++..|---+-|.||=- .=+.=..-+-+..-.
T Consensus 21 TPF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~ 75 (303)
T 2wkj_A 21 TPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAE 75 (303)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHH
T ss_pred cCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHH
Confidence 3666 5999999999999988778888888888743 334445555444443
No 5
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=11.82 E-value=1.2e+02 Score=28.35 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=27.0
Q ss_pred ccc---ccCHHHHHHHhhhhcccccccccccCCCCC
Q 015618 46 PYT---KIDWDAYMSQVSGFLEGERDYSNLKGDTGP 78 (403)
Q Consensus 46 pYT---EIDw~AYMqqv~~~l~Ge~DYs~i~GdTGP 78 (403)
|+| +||++++-+.++-..++ .|---+-|.||=
T Consensus 9 Pf~~dg~iD~~~l~~lv~~li~~-v~gl~v~GttGE 43 (283)
T 2pcq_A 9 PFDREGRLDEEAFRELAQALEPL-VDGLLVYGSNGE 43 (283)
T ss_dssp CBCTTCCBCHHHHHHHHHHHGGG-SSCCEETCTTTT
T ss_pred CCCCCCCcCHHHHHHHHHHHHhh-CCEEEECCcCcC
Confidence 665 59999999999999888 888777888874
No 6
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=10.80 E-value=1.2e+02 Score=28.82 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=36.4
Q ss_pred ccc---ccCHHHHHHHhhhhcccccccccccCCCCCc--cccchhHHHHHHHHHHh
Q 015618 46 PYT---KIDWDAYMSQVSGFLEGERDYSNLKGDTGPL--VYPAGFLYVYSAIQYIT 96 (403)
Q Consensus 46 pYT---EIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPL--VYPAGfVyiYs~Ly~lT 96 (403)
|+| +||++++-+.++-..++..|---+-|.||=- .=+.=..-+-+..-...
T Consensus 23 Pf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~ 78 (301)
T 1xky_A 23 PFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVV 78 (301)
T ss_dssp CBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHh
Confidence 666 5999999999999988778888888888743 33445555555444433
No 7
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=10.27 E-value=1.2e+02 Score=28.38 Aligned_cols=33 Identities=30% Similarity=0.471 Sum_probs=27.2
Q ss_pred ccc---ccCHHHHHHHhhhhcccccccccccCCCCC
Q 015618 46 PYT---KIDWDAYMSQVSGFLEGERDYSNLKGDTGP 78 (403)
Q Consensus 46 pYT---EIDw~AYMqqv~~~l~Ge~DYs~i~GdTGP 78 (403)
|+| +||++++-+.++-..++..|---+-|.||=
T Consensus 10 Pf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE 45 (288)
T 2nuw_A 10 PFDKQGKVNVDALKTHAKNLLEKGIDAIFVNGTTGL 45 (288)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHTTCCEEEETSTTTT
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccC
Confidence 665 599999999999888777787777888874
No 8
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=10.22 E-value=1.3e+02 Score=28.43 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=33.7
Q ss_pred ccc---ccCHHHHHHHhhhhcccccccccccCCCCCc--cccchhHHHHHHHH
Q 015618 46 PYT---KIDWDAYMSQVSGFLEGERDYSNLKGDTGPL--VYPAGFLYVYSAIQ 93 (403)
Q Consensus 46 pYT---EIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPL--VYPAGfVyiYs~Ly 93 (403)
|+| +||+++.-+.++-..++..|---+-|.||=- .=+.=..-+-...-
T Consensus 14 Pf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~ 66 (294)
T 3b4u_A 14 PFKTDGTVDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFI 66 (294)
T ss_dssp CBCTTSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHH
Confidence 666 5999999999999888778887778888743 22344444444433
No 9
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=10.09 E-value=1.1e+02 Score=28.66 Aligned_cols=50 Identities=10% Similarity=0.008 Sum_probs=35.3
Q ss_pred ccc---ccCHHHHHHHhhhhcccccccccccCCCCCc--cccchhHHHHHHHHHH
Q 015618 46 PYT---KIDWDAYMSQVSGFLEGERDYSNLKGDTGPL--VYPAGFLYVYSAIQYI 95 (403)
Q Consensus 46 pYT---EIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPL--VYPAGfVyiYs~Ly~l 95 (403)
|+| +||++++-+.++-..++..|---+-|.||=- .=+.=+.-+-+..-..
T Consensus 12 Pf~~dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~ 66 (292)
T 2ojp_A 12 PMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDL 66 (292)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHH
Confidence 666 5999999999999887778887788888743 3344455555544433
No 10
>1ha8_A Pheromone, ER-23; NMR {Euplotes raikovi} SCOP: g.58.1.1
Probab=9.79 E-value=84 Score=22.78 Aligned_cols=23 Identities=39% Similarity=0.735 Sum_probs=15.1
Q ss_pred hcccccccccccCCCCCcc-----ccch
Q 015618 62 FLEGERDYSNLKGDTGPLV-----YPAG 84 (403)
Q Consensus 62 ~l~Ge~DYs~i~GdTGPLV-----YPAG 84 (403)
|-||.---+-...+|||+- ||||
T Consensus 7 fsdggdcttcfnngtgpcanclagypag 34 (51)
T 1ha8_A 7 FSDGGDCTTCFNNGTGPCANCLAGYPAG 34 (51)
T ss_dssp HHTTCCSHHHHTTTTSSTTTTTSSCTTS
T ss_pred hcCCCccceeecCCCcchhhhhccCCCC
Confidence 4455443444567899975 9998
Done!