Query 015618
Match_columns 403
No_of_seqs 121 out of 211
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 15:44:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015618.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015618hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2omoa1 d.58.4.11 (A:1-98) Hyp 50.8 2.6 0.00019 31.1 1.4 28 52-84 71-98 (98)
2 d1i60a_ c.1.15.4 (A:) Hypothet 11.7 44 0.0032 27.8 1.9 21 49-80 224-244 (278)
3 d1t27a_ d.129.3.4 (A:) Phoshat 9.9 18 0.0013 32.8 -1.5 27 341-367 66-96 (269)
4 d1ha8a_ g.58.1.1 (A:) Pheromon 9.8 39 0.0029 22.8 0.7 23 62-84 7-34 (51)
5 d2hkja2 d.14.1.3 (A:307-470) T 8.6 48 0.0035 27.9 0.9 8 48-55 87-94 (164)
6 d1sddb1 b.6.1.3 (B:1657-1723) 8.4 47 0.0034 23.6 0.7 11 220-230 6-16 (67)
7 d1ghha_ d.57.1.1 (A:) DNA dama 6.7 85 0.0062 23.3 1.5 20 104-123 12-33 (81)
8 d2a90a2 d.289.1.1 (A:132-211) 6.6 22 0.0016 25.6 -2.0 34 44-83 45-78 (80)
9 d2id6a2 a.121.1.1 (A:76-200) T 6.4 1.7E+02 0.013 22.1 3.3 44 21-64 71-117 (125)
10 d2c9qa1 b.1.18.17 (A:1-102) Co 6.4 98 0.0072 22.6 1.7 13 226-238 78-90 (102)
No 1
>d2omoa1 d.58.4.11 (A:1-98) Hypothetical protein NE0621 {Nitrosomonas europaea [TaxId: 915]}
Probab=50.78 E-value=2.6 Score=31.10 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=24.1
Q ss_pred HHHHHHHhhhhcccccccccccCCCCCccccch
Q 015618 52 WDAYMSQVSGFLEGERDYSNLKGDTGPLVYPAG 84 (403)
Q Consensus 52 w~AYMqqv~~~l~Ge~DYs~i~GdTGPLVYPAG 84 (403)
+++|++++..++.|.++-..+.+ |||||
T Consensus 71 ~~~~~~~~~~ll~~p~~~~~~~~-----v~p~~ 98 (98)
T d2omoa1 71 YLTWRDTVADWMAEPRKGVIYGG-----LYPTG 98 (98)
T ss_dssp HHHHHHHHGGGBSSCCEEEEEEE-----EESCC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEE-----ecCCC
Confidence 67899999999999988777766 88988
No 2
>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]}
Probab=11.65 E-value=44 Score=27.78 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=13.8
Q ss_pred ccCHHHHHHHhhhhcccccccccccCCCCCcc
Q 015618 49 KIDWDAYMSQVSGFLEGERDYSNLKGDTGPLV 80 (403)
Q Consensus 49 EIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPLV 80 (403)
+|||+++++.++. .|.+||++
T Consensus 224 ~id~~~~~~~l~~-----------~gy~G~~~ 244 (278)
T d1i60a_ 224 AIDLDAHLSALKE-----------IGFSDVVS 244 (278)
T ss_dssp SSCHHHHHHHHHH-----------TTCCSEEE
T ss_pred ccCHHHHHHHHHH-----------HCCCeEEE
Confidence 5777777776665 46666664
No 3
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.93 E-value=18 Score=32.81 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=18.8
Q ss_pred CCCChhHHHH----HHHHhHhhcccCCCchH
Q 015618 341 TPFPTLLRLI----LFMGVELCWNVYPSNIY 367 (403)
Q Consensus 341 t~~p~~~~~~----~~~~~E~~WNvyPST~~ 367 (403)
+++|.+++-+ .+.++|-|||.||-|-+
T Consensus 66 sklP~wir~~~P~~al~v~EkaWNaYPy~~T 96 (269)
T d1t27a_ 66 SKVPTFVRMLAPEGALNIHEKAWNAYPYCRT 96 (269)
T ss_dssp TTSCHHHHTTSCTTTTCEEEEEEEETTEEEE
T ss_pred hhChHHHHHhCCccccEEEEEeeccCceeEE
Confidence 4555555432 56789999999997753
No 4
>d1ha8a_ g.58.1.1 (A:) Pheromone ER-23 {Euplotes raikovi [TaxId: 5938]}
Probab=9.79 E-value=39 Score=22.78 Aligned_cols=23 Identities=39% Similarity=0.735 Sum_probs=15.1
Q ss_pred hcccccccccccCCCCCcc-----ccch
Q 015618 62 FLEGERDYSNLKGDTGPLV-----YPAG 84 (403)
Q Consensus 62 ~l~Ge~DYs~i~GdTGPLV-----YPAG 84 (403)
|-||.---+-...+|||+- ||||
T Consensus 7 fsdggdcttcfnngtgpcanclagypag 34 (51)
T d1ha8a_ 7 FSDGGDCTTCFNNGTGPCANCLAGYPAG 34 (51)
T ss_dssp HHTTCCSHHHHTTTTSSTTTTTSSCTTS
T ss_pred hcCCCccceeecCCCcchhhhhccCCCC
Confidence 4455443444567899975 9998
No 5
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=8.63 E-value=48 Score=27.86 Aligned_cols=8 Identities=38% Similarity=1.269 Sum_probs=7.1
Q ss_pred cccCHHHH
Q 015618 48 TKIDWDAY 55 (403)
Q Consensus 48 TEIDw~AY 55 (403)
.+|||+.|
T Consensus 87 ~~inW~~Y 94 (164)
T d2hkja2 87 EELDWKRY 94 (164)
T ss_dssp HHSCGGGG
T ss_pred HhcChhhc
Confidence 58999999
No 6
>d1sddb1 b.6.1.3 (B:1657-1723) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.44 E-value=47 Score=23.59 Aligned_cols=11 Identities=9% Similarity=0.610 Sum_probs=8.8
Q ss_pred cceeeEeeeee
Q 015618 220 GRVFIHFWSVN 230 (403)
Q Consensus 220 ~R~Fl~kWTVN 230 (403)
|.+|.|+|+|+
T Consensus 6 G~t~tY~w~v~ 16 (67)
T d1sddb1 6 NKTYTYVWHAT 16 (67)
T ss_dssp TCCEECCEECC
T ss_pred CCeEEEEEEcC
Confidence 56888999885
No 7
>d1ghha_ d.57.1.1 (A:) DNA damage-inducible protein DinI {Escherichia coli [TaxId: 562]}
Probab=6.73 E-value=85 Score=23.30 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=15.4
Q ss_pred cCChhHHHHHh--hhhhhhhhh
Q 015618 104 QLPWWGLSLLC--LSKRVHSIF 123 (403)
Q Consensus 104 Q~Pp~~l~ll~--lSKRlHSIf 123 (403)
++|+-++-.+- |+||+|.+|
T Consensus 12 ~lp~ga~~aL~~EL~kRl~~~f 33 (81)
T d1ghha_ 12 PLPAGAIDALAGELSRRIQYAF 33 (81)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHC
T ss_pred CCCchHHHHHHHHHHHHHHhhC
Confidence 36766666665 899999998
No 8
>d2a90a2 d.289.1.1 (A:132-211) Deltex (Dx) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=6.63 E-value=22 Score=25.60 Aligned_cols=34 Identities=24% Similarity=0.515 Sum_probs=20.9
Q ss_pred hccccccCHHHHHHHhhhhcccccccccccCCCCCccccc
Q 015618 44 YVPYTKIDWDAYMSQVSGFLEGERDYSNLKGDTGPLVYPA 83 (403)
Q Consensus 44 ~VpYTEIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPLVYPA 83 (403)
.-+|+ ||+++ |.|+.. ..|.. ..|+=-..| .||+
T Consensus 45 ~~~Y~-IDf~~-m~Q~n~-~tg~~--R~IrR~~~~-~~p~ 78 (80)
T d2a90a2 45 GLPYT-INFSN-LTQLRQ-PSGPM--RSIRRTQQA-PYPL 78 (80)
T ss_dssp SCCEE-EETTT-TEEEET-TTCCE--EEEEEEECC-CCCE
T ss_pred CccEE-EECCC-CEEEeC-CCCCE--EeeEecCCC-CCCc
Confidence 44777 99999 888864 44543 445444444 5553
No 9
>d2id6a2 a.121.1.1 (A:76-200) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=6.38 E-value=1.7e+02 Score=22.10 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=31.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhc--c-ccccCHHHHHHHhhhhcc
Q 015618 21 SSKVAFAFGLIIMDALLVALIITYV--P-YTKIDWDAYMSQVSGFLE 64 (403)
Q Consensus 21 ~p~~~~~~~lll~e~~l~~~II~~V--p-YTEIDw~AYMqqv~~~l~ 64 (403)
||+.++--+.++.|....+..-..- | =+|+|..+++.+++.++|
T Consensus 71 d~e~~~~~l~~~~~g~~~ky~~~~~~~~~~~~~d~~~l~~e~~~~ld 117 (125)
T d2id6a2 71 TEEIALKFLMWFFSGFEEVYLRTYQGKPELLKRDMNTLVEEVKVMLR 117 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHhhHHHHHHHHHHHHH
Confidence 4555566677777887766644432 2 478999999999998764
No 10
>d2c9qa1 b.1.18.17 (A:1-102) Copper resistance protein C (CopC, PcoC) {Pseudomonas syringae [TaxId: 317]}
Probab=6.36 E-value=98 Score=22.55 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=10.6
Q ss_pred eeeeeeeecCccC
Q 015618 226 FWSVNFKFVPEPV 238 (403)
Q Consensus 226 kWTVNWrFv~Ee~ 238 (403)
++||.||.++++-
T Consensus 78 ~Y~V~wrvvs~DG 90 (102)
T d2c9qa1 78 TYKVDWRAVSSDT 90 (102)
T ss_dssp EEEEEEEECCTTC
T ss_pred eEEEEEEEEecCC
Confidence 5789999998873
Done!