BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015619
(403 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E04|A Chain A, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|B Chain B, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|C Chain C, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|D Chain D, Crystal Structure Of Human Fumarate Hydratase
Length = 490
Score = 605 bits (1560), Expect = e-173, Method: Compositional matrix adjust.
Identities = 293/401 (73%), Positives = 337/401 (84%), Gaps = 1/401 (0%)
Query: 2 EYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHK 61
+YGLDP I AIM+AA EVAEGKLNDHFPLVVWQTGSGTQ+NMN NEVI+NRA E+LG +
Sbjct: 89 DYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGE 148
Query: 62 RGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDI 120
G KI VHPNDHVN+SQSSNDTFPT MHIAAA+E + L+P L+ LH++L +KS EF I
Sbjct: 149 LGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDAKSKEFAQI 208
Query: 121 VKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKG 180
+KIGRTHTQDA PLTLGQEFSGY QVKY + R+ +PR+Y+LA GGTAVGTGLNT+ G
Sbjct: 209 IKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAVGTGLNTRIG 268
Query: 181 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSG 240
F K+A+ VA T LPFVTA NKFEALAAHDA VE SGA+NT A SLMKIAND+R LGSG
Sbjct: 269 FAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSG 328
Query: 241 PRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVF 300
PR GLGELILPENEPGSSIMPGKVNPTQCEA+TMV AQV+GNHVA+TVGGSNGHFELNVF
Sbjct: 329 PRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVF 388
Query: 301 KPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNA 360
KPM+ +LHS RLLGDAS SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD A
Sbjct: 389 KPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKA 448
Query: 361 AAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 401
A +AK AHK G+TLK+ A++LG L +E+FD V P+ M+GP
Sbjct: 449 AKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGP 489
>pdb|1YFM|A Chain A, Recombinant Yeast Fumarase
Length = 488
Score = 563 bits (1450), Expect = e-161, Method: Compositional matrix adjust.
Identities = 280/398 (70%), Positives = 321/398 (80%)
Query: 4 GLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG 63
GLDP I KAI QAA EVA GKL+DHFPLVV+QTGSGTQSNMNANEVI+NRA EILG K G
Sbjct: 90 GLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGKIG 149
Query: 64 EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKI 123
K VHPN+H N+SQSSNDTFPTVMHIAA+++ + LIP L L N+L +KS EF IVKI
Sbjct: 150 SKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHIVKI 209
Query: 124 GRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDV 183
GRTH QDATPLTLGQEFSGY QV+ GI RV L + LAQGGTAVGTGLNTK GFDV
Sbjct: 210 GRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPGFDV 269
Query: 184 KIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRC 243
KIA +++ET L F TA N+FEALAAHDA VE SGALNT+A SL KIA D+R LGSGPRC
Sbjct: 270 KIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRC 329
Query: 244 GLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPM 303
G EL+LPENEPGSSIMPGKVNPTQ EALT VC QV+GN+ AIT GS G FELNVFKP+
Sbjct: 330 GYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKPV 389
Query: 304 IASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAV 363
+ + LL+S+RL+ DA+ SF +CV GI+AN RI +LL +SLMLVT+LNPKIGYD A+ V
Sbjct: 390 MIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAASKV 449
Query: 364 AKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 401
AK AHK+G TLK++AL+LGVL +EFD VVPE M+GP
Sbjct: 450 AKNAHKKGITLKESALELGVLTEKEFDEWVVPEHMLGP 487
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
pdb|3GTD|B Chain B, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
Length = 482
Score = 524 bits (1349), Expect = e-149, Method: Compositional matrix adjust.
Identities = 258/400 (64%), Positives = 306/400 (76%), Gaps = 2/400 (0%)
Query: 2 EYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 60
E+G L+ I +I +A + G+ D+FPLVVWQTGSGTQ+NMN NEVIA+ A E L
Sbjct: 82 EFGDLEYKIATSIDKAIDRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELTG 141
Query: 61 KRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKD 119
K+G K VHPNDHVN+ QSSND+FPT MHIA + T +LIP L L L KS ++
Sbjct: 142 KKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTYLQDKSKDWDK 201
Query: 120 IVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 179
I+KIGRTH QDATPLTL QEFSGY TQ++Y ++R+ L ++Y LAQGGTAVGTG+N+K
Sbjct: 202 IIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLAQGGTAVGTGINSKI 261
Query: 180 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGS 239
GFD+K A VAE T PF TA NKFE+LAAHDA VE SG LNT+A SLMKIAND+RLLGS
Sbjct: 262 GFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGS 321
Query: 240 GPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV 299
GPRCGLGEL LPENEPGSSIMPGKVNPTQ EALTMVC QV+GNHV +T+ GSNGH ELNV
Sbjct: 322 GPRCGLGELHLPENEPGSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSNGHLELNV 381
Query: 300 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDN 359
FKP+I +L S+ LL D+ SF +CV+G++ N RI+ L +SLMLVT LNP IGYDN
Sbjct: 382 FKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINTLRDKSLMLVTVLNPHIGYDN 441
Query: 360 AAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 399
AA +AK+AHK G TLK+AA KL L+ EEFD +VVPEKMI
Sbjct: 442 AAKIAKEAHKYGITLKEAAKKLNFLSEEEFDKIVVPEKMI 481
>pdb|3TV2|A Chain A, Structure Of A Class Ii Fumarate Hydratase From
Burkholderia Pseudomallei
Length = 459
Score = 512 bits (1319), Expect = e-145, Method: Compositional matrix adjust.
Identities = 251/390 (64%), Positives = 292/390 (74%), Gaps = 1/390 (0%)
Query: 12 AIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPN 70
AI+ AA E+ G+ D FPL VWQTGSGTQ+NMN NEVIANRA+E+LG +RGE + VHPN
Sbjct: 68 AIVAAADEIIAGRHADEFPLAVWQTGSGTQTNMNLNEVIANRASELLGGERGESRAVHPN 127
Query: 71 DHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQD 130
D VNR QSSND FPT MHIAAA L+P L+ L +L +K+ F DIVKIGRTH QD
Sbjct: 128 DDVNRGQSSNDVFPTAMHIAAARAIVDHLLPALRTLRATLDAKAAAFADIVKIGRTHLQD 187
Query: 131 ATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVA 190
ATPLTLGQEFSGY Q+ GI V LP +Y+LAQGGTAVGTGLN F +A+ +
Sbjct: 188 ATPLTLGQEFSGYVAQLDQGIRHVEAALPHLYELAQGGTAVGTGLNAHPKFAAGVAAEIG 247
Query: 191 EETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELIL 250
T LPFV+A NKFE +AA DA V GAL TVAASLMKIAND+R L SGPRCGLGEL +
Sbjct: 248 RLTGLPFVSAPNKFEVMAAADALVFAHGALKTVAASLMKIANDIRWLASGPRCGLGELSI 307
Query: 251 PENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLH 310
PENEPGSSIMPGKVNPTQ EA+TM+C QV GN VA+ GG++G+FELNVF+PMIA +L
Sbjct: 308 PENEPGSSIMPGKVNPTQSEAVTMLCCQVFGNDVAVNFGGASGNFELNVFRPMIAHNVLQ 367
Query: 311 SLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKE 370
S+RLL D + F +C GI+ NR RI LL+ESLMLVT+LNP IGYD AA +AKKAHKE
Sbjct: 368 SVRLLADGAQGFNDHCAVGIEPNRARIDALLNESLMLVTALNPHIGYDKAAQIAKKAHKE 427
Query: 371 GTTLKDAALKLGVLNSEEFDNLVVPEKMIG 400
GTTLK AAL LG + +FD V PE M+G
Sbjct: 428 GTTLKAAALALGYVTDAQFDEWVRPEHMVG 457
>pdb|4HGV|A Chain A, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|B Chain B, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|C Chain C, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|D Chain D, Crystal Structure Of A Fumarate Hydratase
Length = 495
Score = 509 bits (1311), Expect = e-145, Method: Compositional matrix adjust.
Identities = 254/399 (63%), Positives = 295/399 (73%), Gaps = 1/399 (0%)
Query: 5 LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG- 63
LDPAIG AI++AAQEV +GKL++HFPLVVWQTGSGTQSN NANEV++NRA E+LG G
Sbjct: 97 LDPAIGDAIVKAAQEVIDGKLDEHFPLVVWQTGSGTQSNXNANEVVSNRAIELLGGVXGS 156
Query: 64 EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKI 123
+K VHPNDHVN SQSSNDT+PT HIA A L+P LK LH +L K F I+KI
Sbjct: 157 KKPVHPNDHVNXSQSSNDTYPTAXHIACAERVIHDLLPALKHLHKALEEKVKAFDHIIKI 216
Query: 124 GRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDV 183
GRTHTQDATPLTLGQEFSGY QV I R+ LP + +LAQGGTAVGTGLN GF
Sbjct: 217 GRTHTQDATPLTLGQEFSGYAAQVASSIKRIEXTLPGLCELAQGGTAVGTGLNAPVGFAE 276
Query: 184 KIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRC 243
K+A +A T + F +A NKFEALAAHD+ V + GA+N AA+L KIAND+R LGSGPR
Sbjct: 277 KVAEEIAAITGIGFTSAPNKFEALAAHDSXVFSHGAINATAAALFKIANDIRFLGSGPRS 336
Query: 244 GLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPM 303
GLGEL LPENEPGSSI PGKVNPTQCEALT VC QV GNH A+T GS GHFELNV+ P+
Sbjct: 337 GLGELSLPENEPGSSIXPGKVNPTQCEALTQVCVQVFGNHAALTFAGSQGHFELNVYNPL 396
Query: 304 IASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAV 363
A L S++LL DA+ SF NCV GI+A + I L SL LVT+L PKIGYDNAA +
Sbjct: 397 XAYNFLQSVQLLADAAISFTDNCVVGIEAREDNIKAALDRSLXLVTALAPKIGYDNAAKI 456
Query: 364 AKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 402
AK AHK GTTL++ A+ G + EEFD +V PE IGP+
Sbjct: 457 AKTAHKNGTTLREEAVGGGYVTDEEFDAVVRPETXIGPA 495
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate
pdb|1FUO|B Chain B, Fumarase C With Bound Citrate
pdb|1YFE|A Chain A, Crystal Structure Of Apo Fumarase C From Escherichia Coli
Length = 467
Score = 491 bits (1263), Expect = e-139, Method: Compositional matrix adjust.
Identities = 248/390 (63%), Positives = 298/390 (76%), Gaps = 1/390 (0%)
Query: 12 AIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPN 70
AI QAA EV G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG RG E+ VHPN
Sbjct: 72 AIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPN 131
Query: 71 DHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQD 130
D VN+SQSSND FPT MH+AA + +LIP LK L +L+ KS F DIVKIGRTH QD
Sbjct: 132 DDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTHLQD 191
Query: 131 ATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVA 190
ATPLTLGQE SG+ +++ + + LP + +LA GGTAVGTGLNT + ++A +A
Sbjct: 192 ATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELA 251
Query: 191 EETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELIL 250
T PFVTA NKFEALA DA V+ GAL +AASLMKIANDVR L SGPRCG+GE+ +
Sbjct: 252 VITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISI 311
Query: 251 PENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLH 310
PENEPGSSIMPGKVNPTQCEALTM+C QV+GN VAI +GG++G+FELNVF+PM+ L
Sbjct: 312 PENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQ 371
Query: 311 SLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKE 370
S+RLL D SF K+C GI+ NRERI++LL+ESLMLVT+LN IGYD AA +AKKAHKE
Sbjct: 372 SVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKE 431
Query: 371 GTTLKDAALKLGVLNSEEFDNLVVPEKMIG 400
G TLK AAL LG L+ EFD+ V PE+M+G
Sbjct: 432 GLTLKAAALALGYLSEAEFDSWVRPEQMVG 461
>pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|B Chain B, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|B Chain B, Fumarase With Bound Pyromellitic Acid
Length = 472
Score = 490 bits (1262), Expect = e-139, Method: Compositional matrix adjust.
Identities = 248/390 (63%), Positives = 298/390 (76%), Gaps = 1/390 (0%)
Query: 12 AIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPN 70
AI QAA EV G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG RG E+ VHPN
Sbjct: 72 AIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPN 131
Query: 71 DHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQD 130
D VN+SQSSND FPT MH+AA + +LIP LK L +L+ KS F DIVKIGRTH QD
Sbjct: 132 DDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTHLQD 191
Query: 131 ATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVA 190
ATPLTLGQE SG+ +++ + + LP + +LA GGTAVGTGLNT + ++A +A
Sbjct: 192 ATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELA 251
Query: 191 EETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELIL 250
T PFVTA NKFEALA DA V+ GAL +AASLMKIANDVR L SGPRCG+GE+ +
Sbjct: 252 VITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISI 311
Query: 251 PENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLH 310
PENEPGSSIMPGKVNPTQCEALTM+C QV+GN VAI +GG++G+FELNVF+PM+ L
Sbjct: 312 PENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQ 371
Query: 311 SLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKE 370
S+RLL D SF K+C GI+ NRERI++LL+ESLMLVT+LN IGYD AA +AKKAHKE
Sbjct: 372 SVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKE 431
Query: 371 GTTLKDAALKLGVLNSEEFDNLVVPEKMIG 400
G TLK AAL LG L+ EFD+ V PE+M+G
Sbjct: 432 GLTLKAAALALGYLSEAEFDSWVRPEQMVG 461
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli
pdb|1KQ7|B Chain B, E315q Mutant Form Of Fumarase C From E.Coli
Length = 467
Score = 489 bits (1260), Expect = e-139, Method: Compositional matrix adjust.
Identities = 247/390 (63%), Positives = 298/390 (76%), Gaps = 1/390 (0%)
Query: 12 AIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPN 70
AI QAA EV G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG RG E+ VHPN
Sbjct: 72 AIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPN 131
Query: 71 DHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQD 130
D VN+SQSSND FPT MH+AA + +LIP LK L +L+ KS F DIVKIGRTH QD
Sbjct: 132 DDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTHLQD 191
Query: 131 ATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVA 190
ATPLTLGQE SG+ +++ + + LP + +LA GGTAVGTGLNT + ++A +A
Sbjct: 192 ATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELA 251
Query: 191 EETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELIL 250
T PFVTA NKFEALA DA V+ GAL +AASLMKIANDVR L SGPRCG+GE+ +
Sbjct: 252 VITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISI 311
Query: 251 PENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLH 310
PEN+PGSSIMPGKVNPTQCEALTM+C QV+GN VAI +GG++G+FELNVF+PM+ L
Sbjct: 312 PENQPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQ 371
Query: 311 SLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKE 370
S+RLL D SF K+C GI+ NRERI++LL+ESLMLVT+LN IGYD AA +AKKAHKE
Sbjct: 372 SVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKE 431
Query: 371 GTTLKDAALKLGVLNSEEFDNLVVPEKMIG 400
G TLK AAL LG L+ EFD+ V PE+M+G
Sbjct: 432 GLTLKAAALALGYLSEAEFDSWVRPEQMVG 461
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
pdb|1FUR|B Chain B, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
Length = 467
Score = 488 bits (1255), Expect = e-138, Method: Compositional matrix adjust.
Identities = 247/390 (63%), Positives = 298/390 (76%), Gaps = 1/390 (0%)
Query: 12 AIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPN 70
AI QAA EV G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG RG E+ VHPN
Sbjct: 72 AIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPN 131
Query: 71 DHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQD 130
D VN+SQSSND FPT MH+AA + +LIP LK L +L+ KS F DIVKIGRT+ QD
Sbjct: 132 DDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTNLQD 191
Query: 131 ATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVA 190
ATPLTLGQE SG+ +++ + + LP + +LA GGTAVGTGLNT + ++A +A
Sbjct: 192 ATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELA 251
Query: 191 EETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELIL 250
T PFVTA NKFEALA DA V+ GAL +AASLMKIANDVR L SGPRCG+GE+ +
Sbjct: 252 VITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISI 311
Query: 251 PENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLH 310
PENEPGSSIMPGKVNPTQCEALTM+C QV+GN VAI +GG++G+FELNVF+PM+ L
Sbjct: 312 PENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQ 371
Query: 311 SLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKE 370
S+RLL D SF K+C GI+ NRERI++LL+ESLMLVT+LN IGYD AA +AKKAHKE
Sbjct: 372 SVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKE 431
Query: 371 GTTLKDAALKLGVLNSEEFDNLVVPEKMIG 400
G TLK AAL LG L+ EFD+ V PE+M+G
Sbjct: 432 GLTLKAAALALGYLSEAEFDSWVRPEQMVG 461
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
pdb|2FUS|B Chain B, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
Length = 467
Score = 488 bits (1255), Expect = e-138, Method: Compositional matrix adjust.
Identities = 247/390 (63%), Positives = 298/390 (76%), Gaps = 1/390 (0%)
Query: 12 AIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPN 70
AI QAA EV G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG RG E+ V+PN
Sbjct: 72 AIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVNPN 131
Query: 71 DHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQD 130
D VN+SQSSND FPT MH+AA + +LIP LK L +L+ KS F DIVKIGRTH QD
Sbjct: 132 DDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTHLQD 191
Query: 131 ATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVA 190
ATPLTLGQE SG+ +++ + + LP + +LA GGTAVGTGLNT + ++A +A
Sbjct: 192 ATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELA 251
Query: 191 EETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELIL 250
T PFVTA NKFEALA DA V+ GAL +AASLMKIANDVR L SGPRCG+GE+ +
Sbjct: 252 VITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISI 311
Query: 251 PENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLH 310
PENEPGSSIMPGKVNPTQCEALTM+C QV+GN VAI +GG++G+FELNVF+PM+ L
Sbjct: 312 PENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQ 371
Query: 311 SLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKE 370
S+RLL D SF K+C GI+ NRERI++LL+ESLMLVT+LN IGYD AA +AKKAHKE
Sbjct: 372 SVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKE 431
Query: 371 GTTLKDAALKLGVLNSEEFDNLVVPEKMIG 400
G TLK AAL LG L+ EFD+ V PE+M+G
Sbjct: 432 GLTLKAAALALGYLSEAEFDSWVRPEQMVG 461
>pdb|1VDK|A Chain A, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
pdb|1VDK|B Chain B, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
Length = 466
Score = 450 bits (1157), Expect = e-127, Method: Compositional matrix adjust.
Identities = 223/395 (56%), Positives = 276/395 (69%)
Query: 9 IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVH 68
I KAI+QAA+EV +GK +DHFPLVV+QTGSGTQ+NMN NEVIANRA+EILG G K H
Sbjct: 70 IAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKPLGSKYAH 129
Query: 69 PNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHT 128
PNDHVNR QSSNDTFPT M++A A+ + RL P ++ L + +K+ F IVK+GRTH
Sbjct: 130 PNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQIVKVGRTHL 189
Query: 129 QDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASA 188
DA P+TLGQE + Q+K + V +Y LA GGTAVGTGLN F +A
Sbjct: 190 MDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHPRFGELVAKY 249
Query: 189 VAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGEL 248
+AEET LPF AEN+F ALAAHD V GA+ T+A +LMKI NDVR L SGP G+GE+
Sbjct: 250 LAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEI 309
Query: 249 ILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGL 308
+P NEPGSSIMPGKVNPTQ EALTMV +V GN + GS G+F+LNV+KP++A
Sbjct: 310 TIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKPVMAYST 369
Query: 309 LHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAH 368
L S+ LL DA ASF+ + +GI+ N ERI + L ++ ML T+LN IGYD AA + KKA
Sbjct: 370 LESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKAIGYDKAAEIVKKAL 429
Query: 369 KEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 403
KE TLK AAL+LG L EEFD +VVP ++ P +
Sbjct: 430 KEKKTLKQAALELGYLTEEEFDRIVVPMRLAKPHE 464
>pdb|3QBP|A Chain A, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|B Chain B, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|C Chain C, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|D Chain D, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
Length = 478
Score = 384 bits (987), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/374 (53%), Positives = 253/374 (67%), Gaps = 11/374 (2%)
Query: 22 EGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSND 81
+G+ +D FP+ V+QTGSGT SNMN NEVIA+ A VHPND VN SQSSND
Sbjct: 97 DGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAGA------NGVAVHPNDDVNMSQSSND 150
Query: 82 TFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFS 141
TFPT HIAA S LIP L++L ++L +K++E++ +VK GRTH DA P+TLGQEFS
Sbjct: 151 TFPTATHIAATEAAVSHLIPALEILQDALATKALEWQSVVKSGRTHLMDAVPVTLGQEFS 210
Query: 142 GYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLP-FVTA 200
GY Q++ GI+RV LPR+ +LA GGTAVGTGLN +GF VK+ S + +T LP TA
Sbjct: 211 GYARQIEAGIERVRATLPRLGELAIGGTAVGTGLNAPEGFGVKVVSVLVSQTGLPQLRTA 270
Query: 201 ENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIM 260
N FEA AA D VE SGAL T+A SL KIAND+R +GSGP GL E+ LP+ +PGSSIM
Sbjct: 271 ANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLPDLQPGSSIM 330
Query: 261 PGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASA 320
PGKVNP EA+T V AQVIGN A+ GG+NG FELNV+ PM+A +L S LL + S
Sbjct: 331 PGKVNPVLPEAVTQVAAQVIGNDAAVAWGGANGAFELNVYIPMMARNILESFTLLTNVSK 390
Query: 321 SFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALK 380
F + C+ G+ AN E + +L S +VT LN IGY+ AAAVAK+A KE T++ +
Sbjct: 391 LFAQRCIAGLTANAEHLRELAESSPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVID 450
Query: 381 LGV----LNSEEFD 390
G+ L+ EE D
Sbjct: 451 RGLIGDKLSLEELD 464
>pdb|4ADL|A Chain A, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|B Chain B, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|C Chain C, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|D Chain D, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADM|A Chain A, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|B Chain B, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|C Chain C, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|D Chain D, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
Length = 495
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/373 (53%), Positives = 253/373 (67%), Gaps = 11/373 (2%)
Query: 23 GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDT 82
G+ +D FP+ V+QTGSGT SNMN NEVIA+ AA +G +HPND VN SQSSNDT
Sbjct: 111 GQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAA------KGGVTLHPNDDVNMSQSSNDT 164
Query: 83 FPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSG 142
FPT HIAA + LIP L+ LH++L +K++++ +VK GRTH DA P+TLGQEFSG
Sbjct: 165 FPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSG 224
Query: 143 YTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLP-FVTAE 201
Y Q++ GI+RV CLPR+ +LA GGTAVGTGLN F V++ + + +T L TA
Sbjct: 225 YARQIEAGIERVRACLPRLGELAIGGTAVGTGLNAPDDFGVRVVAVLVAQTGLSELRTAA 284
Query: 202 NKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMP 261
N FEA AA D VE SGAL T+A SL KIAND+R +GSGP GL E+ LP+ +PGSSIMP
Sbjct: 285 NSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLPDLQPGSSIMP 344
Query: 262 GKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASAS 321
GKVNP EA+T V AQVIGN AI GG+NG FELNV+ PM+A +L S +LL + S
Sbjct: 345 GKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVYIPMMARNILESFKLLTNVSRL 404
Query: 322 FEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKL 381
F + C+ G+ AN E + +L S +VT LN IGY+ AAAVAK+A KE T++ +
Sbjct: 405 FAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDR 464
Query: 382 GV----LNSEEFD 390
G+ L+ E+ D
Sbjct: 465 GLIGDRLSIEDLD 477
>pdb|3NO9|A Chain A, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|B Chain B, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|C Chain C, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|D Chain D, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
Length = 475
Score = 380 bits (977), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/373 (53%), Positives = 253/373 (67%), Gaps = 11/373 (2%)
Query: 23 GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDT 82
G+ +D FP+ V+QTGSGT SNMN NEVIA+ AA +G +HPND VN SQSSNDT
Sbjct: 90 GQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAA------KGGVTLHPNDDVNMSQSSNDT 143
Query: 83 FPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSG 142
FPT HIAA + LIP L+ LH++L +K++++ +VK GRTH DA P+TLGQEFSG
Sbjct: 144 FPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSG 203
Query: 143 YTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLP-FVTAE 201
Y Q++ GI+RV CLPR+ +LA GGTAVGTGLN F V++ + + +T L TA
Sbjct: 204 YARQIEAGIERVRACLPRLGELAIGGTAVGTGLNAPDDFGVRVVAVLVAQTGLSELRTAA 263
Query: 202 NKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMP 261
N FEA AA D VE SGAL T+A SL KIAND+R +GSGP GL E+ LP+ +PGSSIMP
Sbjct: 264 NSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLPDLQPGSSIMP 323
Query: 262 GKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASAS 321
GKVNP EA+T V AQVIGN AI GG+NG FELNV+ PM+A +L S +LL + S
Sbjct: 324 GKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVYIPMMARNILESFKLLTNVSRL 383
Query: 322 FEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKL 381
F + C+ G+ AN E + +L S +VT LN IGY+ AAAVAK+A KE T++ +
Sbjct: 384 FAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDR 443
Query: 382 GV----LNSEEFD 390
G+ L+ E+ D
Sbjct: 444 GLIGDRLSIEDLD 456
>pdb|4APA|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
Length = 474
Score = 379 bits (974), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/373 (52%), Positives = 253/373 (67%), Gaps = 11/373 (2%)
Query: 23 GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDT 82
G+ +D FP+ V+QTGSGT SNMN NEVIA+ AA +G +HPND VN SQSSNDT
Sbjct: 89 GQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAA------KGGVTLHPNDDVNMSQSSNDT 142
Query: 83 FPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSG 142
FPT HIAA + LIP L+ LH++L +K++++ +VK GRTH DA P+TLGQEFSG
Sbjct: 143 FPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSG 202
Query: 143 YTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLP-FVTAE 201
Y Q++ GI+RV CLPR+ +LA GGTAVGTGLN F V++ + + +T L TA
Sbjct: 203 YARQIEAGIERVRACLPRLGELAIGGTAVGTGLNAPDDFGVRVVAVLVAQTGLSELRTAA 262
Query: 202 NKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMP 261
N FEA AA D VE SGAL T+A SL KIAND+R +GSGP GL E+ LP+ +PG+SIMP
Sbjct: 263 NSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLPDLQPGASIMP 322
Query: 262 GKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASAS 321
GKVNP EA+T V AQVIGN AI GG+NG FELNV+ PM+A +L S +LL + S
Sbjct: 323 GKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVYIPMMARNILESFKLLTNVSRL 382
Query: 322 FEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKL 381
F + C+ G+ AN E + +L S +VT LN IGY+ AAAVAK+A KE T++ +
Sbjct: 383 FAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDR 442
Query: 382 GV----LNSEEFD 390
G+ L+ E+ D
Sbjct: 443 GLIGDRLSIEDLD 455
>pdb|4APB|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
Length = 474
Score = 379 bits (972), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/373 (52%), Positives = 252/373 (67%), Gaps = 11/373 (2%)
Query: 23 GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDT 82
G+ +D FP+ V+QTGSGT SNMN NEVIA+ AA +G +HPND VN SQSSNDT
Sbjct: 89 GQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAA------KGGVTLHPNDDVNMSQSSNDT 142
Query: 83 FPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSG 142
FPT HIAA + LIP L+ LH++L +K++++ +VK GRTH DA P+TLGQEFSG
Sbjct: 143 FPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSG 202
Query: 143 YTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLP-FVTAE 201
Y Q++ GI+RV CLPR+ +LA GGTAVGTGLN F V++ + + +T L TA
Sbjct: 203 YARQIEAGIERVRACLPRLGELAIGGTAVGTGLNAPDDFGVRVVAVLVAQTGLSELRTAA 262
Query: 202 NKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMP 261
N FEA AA D VE SGAL T+A SL KIAND+R +GSGP GL E+ LP+ +PG SIMP
Sbjct: 263 NSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLPDLQPGCSIMP 322
Query: 262 GKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASAS 321
GKVNP EA+T V AQVIGN AI GG+NG FELNV+ PM+A +L S +LL + S
Sbjct: 323 GKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVYIPMMARNILESFKLLTNVSRL 382
Query: 322 FEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKL 381
F + C+ G+ AN E + +L S +VT LN IGY+ AAAVAK+A KE T++ +
Sbjct: 383 FAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDR 442
Query: 382 GV----LNSEEFD 390
G+ L+ E+ D
Sbjct: 443 GLIGDRLSIEDLD 455
>pdb|3RD8|A Chain A, Crystal Structure Of Fumarate Hydratase Class Ii
Mycobacterium Smegmatis
Length = 489
Score = 374 bits (959), Expect = e-104, Method: Compositional matrix adjust.
Identities = 209/391 (53%), Positives = 258/391 (65%), Gaps = 11/391 (2%)
Query: 5 LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE 64
LDP AI+ AA E+AEGK +D FP+ V+QTGSGT SNMN NEVIA+ AA
Sbjct: 90 LDPEKADAIIAAAGEIAEGKHDDQFPIDVFQTGSGTSSNMNTNEVIASIAAA------NG 143
Query: 65 KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIG 124
VHPNDHVN SQSSNDTFPT HIAA LIP L+VLH SL +K+ +++ +VK G
Sbjct: 144 VTVHPNDHVNMSQSSNDTFPTATHIAATEAAVRHLIPALEVLHASLAAKAKQWRTVVKSG 203
Query: 125 RTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVK 184
RTH DA P+TLGQEF GY Q++ GI+RV LPR+ +LA GGTAVGTGLN +GF K
Sbjct: 204 RTHLMDAVPVTLGQEFGGYARQIEAGIERVKATLPRLGELAIGGTAVGTGLNAPEGFGAK 263
Query: 185 IASAVAEETSLP-FVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRC 243
+ + ET L TA + FEA AA D VE SGAL T+A SL KIAND+R +GSGP
Sbjct: 264 VVEVLVNETGLAELRTAVDSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPLT 323
Query: 244 GLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPM 303
GL E+ LP+ +PGSSIMPGKVNP EA+T V QV+GN AI GG++G FELNV+ PM
Sbjct: 324 GLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVACQVVGNDAAIAFGGASGAFELNVYIPM 383
Query: 304 IASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAV 363
+A LL S LL + S F + C+ G+ AN ER+ +L S +VT LN IGY+ AA V
Sbjct: 384 MARNLLESFTLLSNVSRLFAERCIDGLVANEERLRELAESSPSIVTPLNSAIGYEEAAKV 443
Query: 364 AKKAHKEGTTLKDAALKLGV----LNSEEFD 390
AK+A E T++ + G+ L+ EE D
Sbjct: 444 AKQALAEKKTIRQTVIDRGLIGDKLSLEELD 474
>pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
pdb|3RRP|B Chain B, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
Length = 471
Score = 357 bits (915), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 246/373 (65%), Gaps = 9/373 (2%)
Query: 23 GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDT 82
GK +D FP+ V+QTGSGT SNMNANEVIA+ AA+ +VHPND VN SQSSNDT
Sbjct: 90 GKHDDQFPIDVFQTGSGTSSNMNANEVIASIAAQ----ATPPVVVHPNDDVNMSQSSNDT 145
Query: 83 FPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSG 142
FPT H+AA LIP L+ L +L +K+ +K +VK GRTH DA P+TLGQEF G
Sbjct: 146 FPTATHLAATEAAVRDLIPALEYLQQALATKAKAWKTVVKSGRTHLMDAVPVTLGQEFGG 205
Query: 143 YTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLP-FVTAE 201
Y Q++ GI+RV LPR+ +L GGTAVGTGLN GF K+ + + T L TA
Sbjct: 206 YARQIEAGIERVKATLPRLGELPIGGTAVGTGLNAPDGFGAKVVEVLKQSTGLSELKTAS 265
Query: 202 NKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMP 261
+ FEA AA D VE SGAL T+AASL KIAND+R +GSGP GLGE+ LP+ +PGSSIMP
Sbjct: 266 DSFEAQAARDGLVEGSGALKTIAASLTKIANDIRWMGSGPLTGLGEIQLPDLQPGSSIMP 325
Query: 262 GKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASAS 321
GKVNP EA+T V AQVIGN AITVGG +G FELNV+ P++A LL S LL + S
Sbjct: 326 GKVNPVLPEAVTQVAAQVIGNDAAITVGGLSGAFELNVYIPVMARNLLESFTLLANVSRL 385
Query: 322 FEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKL 381
F CV G+ AN + + L S +VT LN IGY+ AAAVAK+A KE T++ +
Sbjct: 386 FVDKCVDGLVANEDHLRTLAESSPSIVTPLNSAIGYEEAAAVAKEALKERKTIRQTVIDR 445
Query: 382 GV----LNSEEFD 390
G+ L+ EE D
Sbjct: 446 GLIGDKLSIEELD 458
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 338 bits (867), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 170/403 (42%), Positives = 250/403 (62%), Gaps = 3/403 (0%)
Query: 1 MEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
ME GL D +G+ I++AA EV EGK ND F + Q G+GT NMNANEVIANRA E++G
Sbjct: 61 MEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMG 120
Query: 60 HKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFK 118
++G + PN HVN SQS+ND FPT HIA N +LI K + K+ EF
Sbjct: 121 EEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLN-QLIETTKYMQQEFMKKADEFA 179
Query: 119 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 178
++K+GRTH QDA P+ LGQEF Y + I+R+ +Y + G TAVGTGLN
Sbjct: 180 GVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNAD 239
Query: 179 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLG 238
+ + +A+ + P +A++ +A D + E S AL ++ KIAND+RL+
Sbjct: 240 PEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMA 299
Query: 239 SGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 298
SGPR GL E++LP +PGSSIMPGKVNP E + V QV GN + IT G FELN
Sbjct: 300 SGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELN 359
Query: 299 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYD 358
V +P++ L+ S+ ++ + SF +NC++GI+AN ER+ + + +S+ ++T++NP +GY+
Sbjct: 360 VMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYE 419
Query: 359 NAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 401
AA +A++A+ G ++++ +K GVL E+ + ++ P +MI P
Sbjct: 420 TAAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHP 462
>pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
Length = 474
Score = 299 bits (765), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 167/395 (42%), Positives = 236/395 (59%), Gaps = 7/395 (1%)
Query: 12 AIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPN 70
AI+ A ++ +G L + F + V+Q G+GT SNMNANEVIANRA E LG RG+ + +HPN
Sbjct: 76 AIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHLGRPRGDYQTIHPN 135
Query: 71 DHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQD 130
D VN SQS+ND +PT + +A + N ++ L L + +K EF ++KIGRT QD
Sbjct: 136 DDVNMSQSTNDVYPTAVRLALLLSQN-QVQTALHRLIAAFEAKGREFATVIKIGRTQLQD 194
Query: 131 ATPLTLGQEFSGYTTQVKYGIDRV--ICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASA 188
A P+TLGQEF + ++ R+ + L R L GGTA+GT +N + +
Sbjct: 195 AVPITLGQEFEAFAATLREDTARLEEVAALFREVNL--GGTAIGTRINASHAYAEQAIVE 252
Query: 189 VAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGEL 248
+++ + + N EA AFV SG L +A L KIAND+RLL SGPR GLGE+
Sbjct: 253 LSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEI 312
Query: 249 ILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGL 308
LP +PGSSIMPGKVNP E++ VC QVIGN + +T+ +G +LN F+P+I +
Sbjct: 313 RLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPLIVYNI 372
Query: 309 LHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAH 368
L S+RLLG A + + CV GI+AN ER ES+ L T+L P +GY AA +AK+A
Sbjct: 373 LSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGYARAAEIAKQAL 432
Query: 369 KEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 403
G T+ + A+ G L++ ++ P +M P +
Sbjct: 433 ASGQTVMEVAISKG-LDASALTIMLDPLRMAFPPE 466
>pdb|3OCF|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
Length = 478
Score = 299 bits (765), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 166/390 (42%), Positives = 234/390 (60%), Gaps = 7/390 (1%)
Query: 12 AIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPN 70
AI+ A ++ +G L + F + V+Q G+GT SNMNANEVIANRA E LG RG+ + +HPN
Sbjct: 93 AIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHLGRPRGDYQTIHPN 152
Query: 71 DHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQD 130
D VN SQS+ND +PT + +A + N ++ L L + +K EF ++KIGRT QD
Sbjct: 153 DDVNMSQSTNDVYPTAVRLALLLSQN-QVQTALHRLIAAFEAKGREFATVIKIGRTQLQD 211
Query: 131 ATPLTLGQEFSGYTTQVKYGIDRV--ICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASA 188
A P+TLGQEF + ++ R+ + L R L GGTA+GT +N + +
Sbjct: 212 AVPITLGQEFEAFAATLREDTARLEEVAALFREVNL--GGTAIGTRINASHAYAEQAIVE 269
Query: 189 VAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGEL 248
+++ + + N EA AFV SG L +A L KIAND+RLL SGPR GLGE+
Sbjct: 270 LSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGEI 329
Query: 249 ILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGL 308
LP +PGSSIMPGKVNP E++ VC QVIGN + +T+ +G +LN F+P+I +
Sbjct: 330 RLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPLIVYNI 389
Query: 309 LHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAH 368
L S+RLLG A + + CV GI+AN ER ES+ L T+L P +GY AA +AK+A
Sbjct: 390 LSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGYARAAEIAKQAL 449
Query: 369 KEGTTLKDAALKLGVLNSEEFDNLVVPEKM 398
G T+ + A+ G L++ ++ P +M
Sbjct: 450 ASGQTVMEVAISKG-LDASALTIMLDPLRM 478
>pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase
pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase
pdb|1JSW|C Chain C, Native L-Aspartate Ammonia Lyase
pdb|1JSW|D Chain D, Native L-Aspartate Ammonia Lyase
Length = 478
Score = 291 bits (744), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 158/397 (39%), Positives = 236/397 (59%), Gaps = 3/397 (0%)
Query: 8 AIGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-K 65
++ AI+ A EV GK D FP+ V+Q G+GT NMN NEV+AN E++GH++GE +
Sbjct: 71 SVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQ 130
Query: 66 IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGR 125
++PNDHVN+ QS+ND +PT IA + +L+ + L K+VEF+DI+K+GR
Sbjct: 131 YLNPNDHVNKCQSTNDAYPTGFRIAV-YSSLIKLVDAINQLREGFERKAVEFQDILKMGR 189
Query: 126 THTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKI 185
T QDA P+TLGQEF ++ +K + + + ++ G TA+GTGLNT K +
Sbjct: 190 TQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLNTPKEYSPLA 249
Query: 186 ASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGL 245
+AE T P V AE+ EA + A+V GAL +A + KI ND+RLL SGPR GL
Sbjct: 250 VKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGL 309
Query: 246 GELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIA 305
E+ LPE + GSSIMP KVNP E + VC +VIGN +T+ G +LNV +P+I
Sbjct: 310 NEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIG 369
Query: 306 SGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAK 365
+ S+ +L +A + + C+ GI AN+E ++ S+ +VT LNP IG+ N V K
Sbjct: 370 QAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGK 429
Query: 366 KAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 402
+ G ++++ L+ G+L E D++ + ++ P+
Sbjct: 430 ICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPA 466
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|B Chain B, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|C Chain C, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|D Chain D, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|E Chain E, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|F Chain F, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|G Chain G, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|H Chain H, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
Length = 401
Score = 291 bits (744), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 150/341 (43%), Positives = 207/341 (60%), Gaps = 3/341 (0%)
Query: 1 MEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
ME GL D +G+ I++AA EV EGK ND F + Q G+GT NMNANEVIANRA E++G
Sbjct: 61 MEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMG 120
Query: 60 HKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFK 118
++G + PN HVN SQS+ND FPT HIA N +LI K + K+ EF
Sbjct: 121 EEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLN-QLIETTKYMQQEFMKKADEFA 179
Query: 119 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 178
++K+GRTH QDA P+ LGQEF Y + I+R+ +Y + G TAVGTGLN
Sbjct: 180 GVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNAD 239
Query: 179 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLG 238
+ + +A+ + P +A++ +A D + E S AL ++ KIAND+RL+
Sbjct: 240 PEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMA 299
Query: 239 SGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 298
SGPR GL E++LP +PGSSIMPGKVNP E + V QV GN + IT G FELN
Sbjct: 300 SGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELN 359
Query: 299 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 339
V +P++ L+ S+ ++ + SF +NC++GI+AN ER+ +
Sbjct: 360 VMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKE 400
>pdb|3C8T|A Chain A, Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp.
Bnc1
Length = 451
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 16/210 (7%)
Query: 76 SQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLT 135
+Q DT TV+ I + SR I +++ +L + + +D GRTH Q A P+T
Sbjct: 104 TQDIMDT-ATVLQIRDGLALISRRIESVR---KALAALARNHRDTPMAGRTHLQHALPVT 159
Query: 136 LGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSL 195
G + + + + R+ PR+ + G + +G DV+ A +
Sbjct: 160 FGYKAAVWLSAFDRHAARLEEISPRVLVVEFSGASGTLASLGTRGLDVQRELARELNLGV 219
Query: 196 PFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--EN 253
P +T + A DA ET L V+ SL K+A D+ ++ + LGE+ P +
Sbjct: 220 PSITWHS------ARDAVAETVQFLALVSGSLGKLAMDISIMMT---TELGEVAEPFVRH 270
Query: 254 EPGSSIMPGKVNPTQCEALTMVCAQVIGNH 283
SS MP K NP CE L + A+++ NH
Sbjct: 271 RGASSTMPQKQNPVSCE-LILAGARIVRNH 299
>pdb|1RE5|A Chain A, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|B Chain B, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|C Chain C, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|D Chain D, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
Length = 450
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 16/214 (7%)
Query: 72 HVNRSQSSNDTFPT--VMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQ 129
+V+ +S D T V+ + A++ + +L L ++L ++++ D +GRT Q
Sbjct: 99 YVHLGATSQDAMDTGLVLQLRDALDL---IEADLGKLADTLSQQALKHADTPLVGRTWLQ 155
Query: 130 DATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAV 189
ATP+TLG + +G + R+ PR+ L GG + K V A A+
Sbjct: 156 HATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGGASGSLAALGSKAMPV--AEAL 213
Query: 190 AEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELI 249
AE+ L E + D VE + L VA SL K D+ LL + GE+
Sbjct: 214 AEQ--LKLTLPEQPWH--TQRDRLVEFASVLGLVAGSLGKFGRDISLL---MQTEAGEVF 266
Query: 250 LPE--NEPGSSIMPGKVNPTQCEALTMVCAQVIG 281
P + GSS MP K NP L +V G
Sbjct: 267 EPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPG 300
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
pdb|4EEI|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
Length = 438
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 98/201 (48%), Gaps = 22/201 (10%)
Query: 94 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGI-- 151
++ S +I +L+ L +SL +K+ E K+I+ +GR+H A P++ GQ+F G + K +
Sbjct: 108 DSMSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSFGQKFLGAYVEFKRRLKD 167
Query: 152 --DRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAA 209
D L + A G + T + KK D I EE S + + + ++
Sbjct: 168 LKDFQKDGLTVQFSGAVGNYCILTTEDEKKAAD--ILGLPVEEVSTQVIPRDRIAKLISI 225
Query: 210 HDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELI--LPENEPGSSIMPGKVNPT 267
H +A+++ ++A ++R L R + E+ + + GSS MP K NP
Sbjct: 226 H----------GLIASAIERLAVEIRHLH---RSDVFEVYEGFSKGQKGSSTMPHKKNPI 272
Query: 268 QCEALTMVCAQVIGNHVAITV 288
E LT + A+++ +HV+I +
Sbjct: 273 STENLTGM-ARMLRSHVSIAL 292
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|C Chain C, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|D Chain D, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|B Chain B, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
Length = 462
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 15/167 (8%)
Query: 124 GRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFD 182
G TH Q A P+ L F Y +K R+ R+ + G A+ GTG + F
Sbjct: 156 GYTHLQRAQPVLLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGAAALAGTGFPIDRHFT 215
Query: 183 VKIASAVAEETSLPF-VTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGP 241
+ L F N +A+A+ D +E ALN L ++A ++ +L S
Sbjct: 216 AR---------ELGFKAPMRNSLDAVASRDFALEVLSALNIGMLHLSRMAEEL-ILYSTE 265
Query: 242 RCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAIT 287
G E+ P+ GSSIMP K NP E + +V+G V ++
Sbjct: 266 EFGFVEV--PDAFATGSSIMPQKKNPDILELIRAKAGRVLGAFVGLS 310
>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate
Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus
Sp. Adp1
Length = 454
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 131/318 (41%), Gaps = 52/318 (16%)
Query: 112 SKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV 171
S++ ++ V +GRT Q A P+TLG + + + + K +DR+ R+ +AQ G AV
Sbjct: 142 SQAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVL-VAQLGGAV 200
Query: 172 GTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIA 231
G+ + + + + A A++ L E D VE + L + ++ K+A
Sbjct: 201 GSLASLQDQGSI-VVEAYAKQLKLGQTACTWHGE----RDRIVEIASVLGIITGNVGKMA 255
Query: 232 NDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPT----------QCEALTMVCAQV 279
D L+ + + E+ P + GSS MP K NP + AL Q
Sbjct: 256 RDWSLM---MQTEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANRVPALMSSIYQS 312
Query: 280 IGNHVAITVGGSNGHF-ELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 338
+ ++G + + L + A L +L +L +G++ N E +
Sbjct: 313 MVQEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVL------------KGMEVNAENMH 360
Query: 339 K--------LLHESLMLVTSLNPKIGYDNA----AAVAKKAHKEGTTLKDAALKLG---- 382
+ ++ E++M+ +L P +G NA A K A E LKD ++
Sbjct: 361 QNIECTHGLIMAEAVMM--ALAPHMGRLNAHHVVEAACKTAVAEQKHLKDIISQVDEVKQ 418
Query: 383 VLNSEEFDNLVVPEKMIG 400
N + D + PE +G
Sbjct: 419 YFNPSQLDEIFKPESYLG 436
>pdb|2QGA|B Chain B, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With Amp
Bound
pdb|2QGA|C Chain C, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With Amp
Bound
Length = 465
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 92/228 (40%), Gaps = 31/228 (13%)
Query: 56 EILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSV 115
E L + + E ++ ++V+ +S D N +IP L+ + L +V
Sbjct: 99 EKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAV 158
Query: 116 EFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYG---IDRVICCLP--------RMYQL 164
E+ + + RTH Q A+ T G+E + + ++ + I RV C +++
Sbjct: 159 EYSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVKVCAKFNGAVGNFNAHKV 218
Query: 165 AQGGT-AVGT-GLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNT 222
A T V T GL KK F++ + + + HD E L
Sbjct: 219 ASKDTDWVNTIGLFLKKHFNLTYSIYCTQ---------------IQDHDYICELCDGLAR 263
Query: 223 VAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCE 270
+L+ + D+ L S L +L + E E GSS MP KVNP E
Sbjct: 264 ANGTLIDLCVDIWLYISN---NLLKLKVKEKEVGSSTMPHKVNPIDFE 308
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases
Length = 431
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 15/183 (8%)
Query: 94 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 153
+ N L+ +L+ + + K+ E K V +GRTH A P T G + + + ++K ++R
Sbjct: 108 QANDILLKDLERFVDIIKEKAKEHKYTVMMGRTHGVHAEPTTFGLKLALWHEEMKRNLER 167
Query: 154 VICCLPRMYQLAQGGTAVGT---GLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAH 210
++ A+ G VG + T D + V E+ L + H
Sbjct: 168 --------FKQAKAGIEVGKISGAVGTYANIDPFVEQYVCEKLGLKAAPISTQTLQRDRH 219
Query: 211 DAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCE 270
++ T L +A S+ K A ++R L + E + + GSS MP K NP E
Sbjct: 220 ADYMAT---LALIATSIEKFAVEIRGLQKSETREVEEF-FAKGQKGSSAMPHKRNPIGSE 275
Query: 271 ALT 273
+T
Sbjct: 276 NMT 278
>pdb|2HVG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Plasmodium Vivax
pdb|2HVG|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Plasmodium Vivax
Length = 482
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 31/228 (13%)
Query: 56 EILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSV 115
E L + + E ++ ++V+ +S D N +IP L+ + L +V
Sbjct: 116 EKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIXLKLKDLAV 175
Query: 116 EFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYG---IDRVICCLP--------RMYQL 164
E+ + + RTH Q A+ T G+E + + ++ + I RV C +++
Sbjct: 176 EYSHVPLLSRTHGQPASSTTFGKEXANFYARIHHHVGVIRRVKVCAKFNGAVGNFNAHKV 235
Query: 165 AQGGT-AVGT-GLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNT 222
A T V T GL KK F++ + + + HD E L
Sbjct: 236 ASKDTDWVNTIGLFLKKHFNLTYSIYCTQ---------------IQDHDYICELCDGLAR 280
Query: 223 VAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCE 270
+L+ + D+ L S L +L + E E GSS P KVNP E
Sbjct: 281 ANGTLIDLCVDIWLYISN---NLLKLKVKEKEVGSSTXPHKVNPIDFE 325
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 113/283 (39%), Gaps = 53/283 (18%)
Query: 78 SSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLG 137
+S+D T +A +E L+ +LK + L + +K IGRTH A P + G
Sbjct: 93 TSSDVLDTANSLAL-VEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFG 151
Query: 138 QEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPF 197
+ G+ +++K + R L + V G KI+ AV ++P
Sbjct: 152 LKVLGWYSEMKRNVQR----------LERAIEEVSYG---------KISGAVGNYANVPP 192
Query: 198 VTAENKFEALAAHDAFVETS-----------GALNTVAASLMKIANDVRLLGSGPRCGLG 246
E L V T L VAA + +IA ++R L R +
Sbjct: 193 EVEEKALSYLGLKPEPVSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHL---QRTEVL 249
Query: 247 ELILP--ENEPGSSIMPGKVNPTQCEALT----MVCAQVIGNHVAITVGG----SNGHFE 296
E+ P + + GSS MP K NP CE LT M+ A V + I + S+ E
Sbjct: 250 EVEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLENIALWHERDISHSSVE 309
Query: 297 LNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 339
VF P L + + +A+ N VR ++ N ER+ K
Sbjct: 310 RYVF-PDATQTLYYMI-----VTAT---NVVRNMKVNEERMKK 343
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 113/283 (39%), Gaps = 53/283 (18%)
Query: 78 SSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLG 137
+S+D T +A +E L+ +LK + L + +K IGRTH A P + G
Sbjct: 92 TSSDVLDTANSLAL-VEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFG 150
Query: 138 QEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPF 197
+ G+ +++K + R L + V G KI+ AV ++P
Sbjct: 151 LKVLGWYSEMKRNVQR----------LERAIEEVSYG---------KISGAVGNYANVPP 191
Query: 198 VTAENKFEALAAHDAFVETS-----------GALNTVAASLMKIANDVRLLGSGPRCGLG 246
E L V T L VAA + +IA ++R L R +
Sbjct: 192 EVEEKALSYLGLKPEPVSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHL---QRTEVL 248
Query: 247 ELILP--ENEPGSSIMPGKVNPTQCEALT----MVCAQVIGNHVAITVGG----SNGHFE 296
E+ P + + GSS MP K NP CE LT M+ A V + I + S+ E
Sbjct: 249 EVEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLENIALWHERDISHSSVE 308
Query: 297 LNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 339
VF P L + + +A+ N VR ++ N ER+ K
Sbjct: 309 RYVF-PDATQTLYYMI-----VTAT---NVVRNMKVNEERMKK 342
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|B Chain B, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|C Chain C, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|D Chain D, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
Length = 403
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 39/229 (17%)
Query: 72 HVNRSQSSNDTFPT-----VMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRT 126
+V+ +SND T + AA++ +R + + L S + ++K + +GRT
Sbjct: 89 YVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGD------QLASMARKYKTLEMVGRT 142
Query: 127 HTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIA 186
H Q A P+TLG +F+ Y ++ ++ L + A+ G AVGT + + +++
Sbjct: 143 HGQWAEPITLGFKFANYYYELYIACRQL--ALAEEFIRAKIGGAVGT-MASWGELGLEVR 199
Query: 187 SAVAEETSLP--FVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCG 244
VAE LP +T + +A ++F + AL +AA ++A ++R
Sbjct: 200 RRVAERLGLPHHVITTQ-----VAPRESFAVLASALALMAAVFERLAVEIR--------- 245
Query: 245 LGELILPE------NEPGSSIMPGKVNPTQCEALTMVCAQVIG-NHVAI 286
EL PE GSS MP K NPT E + + V HVA
Sbjct: 246 --ELSRPEIGEVVEGGGGSSAMPHKANPTASERIVSLARYVRALTHVAF 292
>pdb|3GZH|A Chain A, Crystal Structure Of Phosphate-Bound Adenylosuccinate
Lyase From E. Coli
Length = 482
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 30/184 (16%)
Query: 99 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 158
++P + L + + +V+++DI + RTH Q ATP T+G+E + V Y ++R L
Sbjct: 169 ILPYWRQLIDGIKDLAVQYRDIPLLSRTHGQPATPSTIGKEMAN----VAYRMERQYRQL 224
Query: 159 PRMYQLAQGGTAVGTGLNTKKGFDVKIAS---AVAEETSLPFVTA----ENKFEA-LAAH 210
++ L + AVG ++ IA+ + S FVT+ N + + H
Sbjct: 225 NQVEILGKINGAVG-------NYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPH 277
Query: 211 DAFVETSGALNTVAASLMKIANDVR----LLGSGPRCGLGELILPENEPGSSIMPGKVNP 266
D E + L+ DV L + GE+ GSS MP KVNP
Sbjct: 278 DYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEI-------GSSTMPHKVNP 330
Query: 267 TQCE 270
E
Sbjct: 331 IDFE 334
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
pdb|1TJ7|B Chain B, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
Length = 457
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 83/211 (39%), Gaps = 14/211 (6%)
Query: 72 HVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDA 131
H RS+ ND T + + +T S L+ + L ++L + +D V G TH Q A
Sbjct: 104 HTGRSR--NDQVATDLKLWCK-DTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRA 160
Query: 132 TPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAE 191
P+T Y + R+ L R+ + +G G +++
Sbjct: 161 QPVTFAHWCLAYVEMLARDESRLQDALKRL-----DVSPLGCGALAGTAYEIDREQLAG- 214
Query: 192 ETSLPFVTA-ENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELIL 250
L F +A N ++++ D +E A L + A D+ +G G EL
Sbjct: 215 --WLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTG-EAGFVELS- 270
Query: 251 PENEPGSSIMPGKVNPTQCEALTMVCAQVIG 281
GSS+MP K NP E + C +V G
Sbjct: 271 DRVTSGSSLMPQKKNPDALELIRGKCGRVQG 301
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
pdb|2PFM|B Chain B, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
Length = 444
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 9/180 (5%)
Query: 94 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 153
+ N ++ +L+ + L +K+ E K + +GRTH A P T G + + ++K ++R
Sbjct: 119 QANEIILKDLENFVSILANKAKEHKYTIMMGRTHGVHAEPTTFGLKLGLWYEEMKRNVER 178
Query: 154 VICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAF 213
++ + AVGT N D + V E L + H +
Sbjct: 179 FKQA-ANTVRVGKLSGAVGTYAN----IDPFVEKYVCENLGLEAAPISTQTLQRDRHAHY 233
Query: 214 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALT 273
+ T L +A S+ K+A ++R L + E + + GSS MP K NP E +T
Sbjct: 234 MST---LALIATSIEKMAVEIRGLQKSETREVEE-AFAKGQKGSSAMPHKRNPIGSENMT 289
>pdb|4EFC|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Trypanosoma Brucei, Tb427tmp.160.5560
pdb|4EFC|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Trypanosoma Brucei, Tb427tmp.160.5560
Length = 472
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 24/212 (11%)
Query: 68 HPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTH 127
H + V+ +S D T + + + +P L + SL SK V++ D+ + RTH
Sbjct: 128 HVTEFVHFGLTSQDINNTAIPMMIRDAIVTLYLPALDGIIGSLTSKLVDW-DVPMLARTH 186
Query: 128 TQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGT---------GLNTK 178
Q A+P L +EF + +++ R +C +P + G A G +N +
Sbjct: 187 GQPASPTNLAKEFVVWIERLREQ-RRQLCEVP---TTGKFGGATGNFNAHLVAYPSVNWR 242
Query: 179 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLG 238
D+ +A + + EN ++ LA A + L+ + L+ + DV
Sbjct: 243 AFADMFLAKYLGLKRQQATTQIEN-YDHLA---ALCDACARLHVI---LIDMCRDVWQYI 295
Query: 239 SGPRCGLGELILPENEPGSSIMPGKVNPTQCE 270
S G + + E E GSS MP KVNP E
Sbjct: 296 S---MGFFKQKVKEGEVGSSTMPHKVNPIDFE 324
>pdb|2X75|A Chain A, Staphylococcus Aureus Adenylosuccinate Lyase
Length = 431
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 18/232 (7%)
Query: 50 IANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNS 109
+ +E LG +R K VH +S D T + + N + +L+ +
Sbjct: 73 FTRQVSETLGEER--KWVH------YGLTSTDVVDTALSFVIK-QANDIIEKDLERFIDV 123
Query: 110 LHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGT 169
L K+ +K + +GRTH A P T G + + + T+++ + R + ++ +
Sbjct: 124 LAEKAKNYKYTLMMGRTHGVHAEPTTFGVKMALWYTEMQRNLQRFKQVREEI-EVGKMSG 182
Query: 170 AVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMK 229
AVGT N +I S V + + + H ++ T L +A SL K
Sbjct: 183 AVGTFANIPP----EIESYVCKHLGIGTAPVSTQTLQRDRHAYYIAT---LALIATSLEK 235
Query: 230 IANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIG 281
A ++R L + E + + GSS MP K NP E +T + + G
Sbjct: 236 FAVEIRNLQKTETREVEEA-FAKGQKGSSAMPHKRNPIGSENITGISRVIRG 286
>pdb|2PTQ|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
pdb|2PTQ|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
Length = 462
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 30/184 (16%)
Query: 99 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 158
++P + L + L +V+++DI + RT+ Q ATP T+G+E + V Y ++R L
Sbjct: 143 ILPYWRQLIDGLKDLAVQYRDIPLLSRTNGQPATPSTIGKEMAN----VAYRMERQYRQL 198
Query: 159 PRMYQLAQGGTAVGTGLNTKKGFDVKIAS---AVAEETSLPFVTA----ENKFEA-LAAH 210
++ L + AVG ++ IA+ + S FVT+ N + + H
Sbjct: 199 NQVEILGKINGAVG-------NYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPH 251
Query: 211 DAFVETSGALNTVAASLMKIANDVR----LLGSGPRCGLGELILPENEPGSSIMPGKVNP 266
D E + L+ DV L + GE+ GSS MP KVNP
Sbjct: 252 DYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEI-------GSSTMPHKVNP 304
Query: 267 TQCE 270
E
Sbjct: 305 IDFE 308
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 103/251 (41%), Gaps = 26/251 (10%)
Query: 40 TQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 99
TQS+ + I R E++G G+ + +S N+ T + + ++++ +
Sbjct: 82 TQSDEDIQTAIERRLKELIGDIAGK--------LQTGRSRNEQVVTDLKLL--LKSSISV 131
Query: 100 IPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICC 157
I L+++ + ++E DI+ G TH Q A P+ Q + + +R+
Sbjct: 132 ISTHLLQLIKTLVERAAIEI-DIIMPGYTHLQKALPIRWSQFLLSHAVALTRDSERLGEV 190
Query: 158 LPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVET 216
R+ L G G G L D ++ + + TS+ N +A++ D VE
Sbjct: 191 KKRITVLPLGSGVLAGNPLE----IDRELLRSELDMTSITL----NSIDAISERDFVVEL 242
Query: 217 SGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE-NEPGSSIMPGKVNPTQCEALTMV 275
+ L K+A D+ + + G + L + GSS++P K NP E +
Sbjct: 243 ISVATLLMIHLSKLAEDLIIFST---TEFGFVTLSDAYSTGSSLLPQKKNPDSLELIRSK 299
Query: 276 CAQVIGNHVAI 286
+V G AI
Sbjct: 300 AGRVFGRLAAI 310
>pdb|2PTR|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
pdb|2PTR|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
Length = 462
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 30/184 (16%)
Query: 99 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 158
++P + L + L +V+++DI + RT Q ATP T+G+E + V Y ++R L
Sbjct: 143 ILPYWRQLIDGLKDLAVQYRDIPLLSRTAGQPATPSTIGKEMAN----VAYRMERQYRQL 198
Query: 159 PRMYQLAQGGTAVGTGLNTKKGFDVKIAS---AVAEETSLPFVTA----ENKFEA-LAAH 210
++ L + AVG ++ IA+ + S FVT+ N + + H
Sbjct: 199 NQVEILGKINGAVG-------NYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPH 251
Query: 211 DAFVETSGALNTVAASLMKIANDVR----LLGSGPRCGLGELILPENEPGSSIMPGKVNP 266
D E + L+ DV L + GE+ GSS MP KVNP
Sbjct: 252 DYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEI-------GSSTMPHKVNP 304
Query: 267 TQCE 270
E
Sbjct: 305 IDFE 308
>pdb|2PTS|A Chain A, Crystal Structure Of Wild Type Escherichia Coli
Adenylosuccinate Lyase
Length = 462
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 76/184 (41%), Gaps = 30/184 (16%)
Query: 99 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 158
++P + L + L +V+++DI + RTH Q ATP T+G+E + V Y +R L
Sbjct: 143 ILPYWRQLIDGLKDLAVQYRDIPLLSRTHGQPATPSTIGKEXAN----VAYRXERQYRQL 198
Query: 159 PRMYQLAQGGTAVGTGLNTKKGFDVKIAS---AVAEETSLPFVTA----ENKFEA-LAAH 210
++ L + AVG ++ IA+ + S FVT+ N + + H
Sbjct: 199 NQVEILGKINGAVG-------NYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPH 251
Query: 211 DAFVETSGALNTVAASLMKIANDVR----LLGSGPRCGLGELILPENEPGSSIMPGKVNP 266
D E + L+ DV L + GE+ GSS P KVNP
Sbjct: 252 DYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEI-------GSSTXPHKVNP 304
Query: 267 TQCE 270
E
Sbjct: 305 IDFE 308
>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 105/260 (40%), Gaps = 32/260 (12%)
Query: 31 LVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIA 90
+VV Q+ Q+ ANE R E++G G+ H RS++ V +
Sbjct: 79 IVVTQSDEDIQT---ANE---RRLKELIGDIAGKL------HTGRSRNEQ----VVTDLK 122
Query: 91 AAMETNSRLIPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVK 148
M+ + +I L+++ + ++E D++ G TH Q A P+ Q + +
Sbjct: 123 LFMKNSLSIISTHLLQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALT 181
Query: 149 YGIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEAL 207
+R+ R+ L G G G L+ D ++ + E S+ N +A+
Sbjct: 182 RDSERLGEVKKRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAI 233
Query: 208 AAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNP 266
+ D VE + L K+A D+ + + G L L + GSS+MP K NP
Sbjct: 234 SERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGSSLMPQKKNP 290
Query: 267 TQCEALTMVCAQVIGNHVAI 286
E + +V G +I
Sbjct: 291 DSLELIRSKSGRVFGRLASI 310
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 106/261 (40%), Gaps = 32/261 (12%)
Query: 34 WQTGSGT--QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 91
W G QS+ + N R E++G G+ H RS+ ND T + +
Sbjct: 76 WSKGVFVVKQSDEDINTANERRLKELIGDIAGKL------HTGRSR--NDQVVTDLKLF- 126
Query: 92 AMETNSRLIPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 149
M+ + +I L+++ + ++E D++ G TH Q A P+ Q + +
Sbjct: 127 -MKNSLSIISTHLLQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALTR 184
Query: 150 GIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALA 208
+R+ R+ L G G G L+ D ++ + E S+ N +A++
Sbjct: 185 DSERLGEVKKRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAIS 236
Query: 209 AHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEP---GSSIMPGKVN 265
D VE + L K+A D+ ++ S G L +++ GSS+MP K N
Sbjct: 237 ERDFVVEFLSFATLLMIHLSKMAEDL-IIYSTSEFGF----LTDSDAFSTGSSLMPQKKN 291
Query: 266 PTQCEALTMVCAQVIGNHVAI 286
P E + +V G +I
Sbjct: 292 PDSLELIRSKAGRVFGRLASI 312
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 104/259 (40%), Gaps = 28/259 (10%)
Query: 34 WQTGSGT--QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 91
W G QS+ + + R E++G G+ H RS+ ND T + +
Sbjct: 76 WSKGVFVVKQSDEDIHTANERRLKELIGDIAGKL------HTGRSR--NDQVVTDLKLF- 126
Query: 92 AMETNSRLIPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 149
M+ + +I L+++ + ++E D++ G TH Q A P+ Q + +
Sbjct: 127 -MKNSLSIISTHLLQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALTR 184
Query: 150 GIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALA 208
+R+ R+ L G G G L+ D ++ + E S+ N +A++
Sbjct: 185 DSERLGEVKKRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAIS 236
Query: 209 AHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPT 267
D VE + L K+A D+ + + G L L + GSS+MP K NP
Sbjct: 237 ERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGSSLMPQKKNPD 293
Query: 268 QCEALTMVCAQVIGNHVAI 286
E + +V G +I
Sbjct: 294 SLELIRSKAGRVFGRLASI 312
>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|B Chain B, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|C Chain C, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|D Chain D, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U16|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm) In Complex With Sulfate
Length = 472
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 102/259 (39%), Gaps = 28/259 (10%)
Query: 34 WQTGSGT--QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 91
W G QS+ + + R E++G G+ H RS++ V +
Sbjct: 74 WSKGVFVVKQSDEDIHTANERRLKELIGDIAGKL------HTGRSRNEQ----VVTDLKL 123
Query: 92 AMETNSRLIPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 149
M+ + +I L+++ + ++E D++ G TH Q A P+ Q + +
Sbjct: 124 FMKNSLSIISTHLLQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALTR 182
Query: 150 GIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALA 208
+R+ R+ L G G G L+ D ++ + E S+ N +A++
Sbjct: 183 DSERLGEVKKRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAIS 234
Query: 209 AHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPT 267
D VE + L K+A D+ + + G L L + GSS+MP K NP
Sbjct: 235 ERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGSSLMPQKKNPD 291
Query: 268 QCEALTMVCAQVIGNHVAI 286
E + +V G +I
Sbjct: 292 SLELIRSKAGRVFGRLASI 310
>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|B Chain B, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|C Chain C, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|D Chain D, Crystal Structrue Of Goose Delta Crystallin
Length = 465
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 103/260 (39%), Gaps = 30/260 (11%)
Query: 34 WQTGSG--TQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 91
W G TQS+ + + R E++G G+ +N +S N+ T + +
Sbjct: 73 WSKGVFVVTQSDEDIHTANERRLKELIGDIAGK--------LNTGRSRNEQVVTDLKLF- 123
Query: 92 AMETNSRLIPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 149
M+ + +I L+++ + ++E D++ G TH Q A P+ Q + +
Sbjct: 124 -MKNSLSVISTHLLQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALTR 181
Query: 150 GIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAE-NKFEAL 207
+R+ R+ L G G G L+ + + L F + N +A+
Sbjct: 182 DSERLGEVKRRINVLPLGSGALAGNPLDIDREM---------LRSELDFASISLNSMDAI 232
Query: 208 AAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNP 266
+ D VE + L K+A D+ + + G L L + GSS+MP K NP
Sbjct: 233 SERDFVVEFLSVATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGSSLMPQKKNP 289
Query: 267 TQCEALTMVCAQVIGNHVAI 286
E + +V G +I
Sbjct: 290 DSLELIRSKAGRVFGRLASI 309
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 104/259 (40%), Gaps = 28/259 (10%)
Query: 34 WQTGSGT--QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 91
W G QS+ + + R E++G G+ H RS+ ND T + +
Sbjct: 76 WSKGVFVVKQSDEDIHTANERRLKELIGDIAGKL------HTGRSR--NDQVVTDLKLF- 126
Query: 92 AMETNSRLIPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 149
M+ + +I L+++ + ++E D++ G TH Q A P+ Q + +
Sbjct: 127 -MKNSLSIISTHLLQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALTR 184
Query: 150 GIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALA 208
+R+ R+ L G G G L+ D ++ + E S+ N +A++
Sbjct: 185 DSERLGEVKKRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAIS 236
Query: 209 AHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPT 267
D VE + L K+A D+ + + G L L + G+S+MP K NP
Sbjct: 237 ERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGASLMPQKKNPD 293
Query: 268 QCEALTMVCAQVIGNHVAI 286
E + +V G +I
Sbjct: 294 SLELIRSKAGRVFGRLASI 312
>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|B Chain B, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|C Chain C, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|D Chain D, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
Length = 474
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 104/259 (40%), Gaps = 28/259 (10%)
Query: 34 WQTGSGT--QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 91
W G QS+ + + R E++G G+ H RS+ ND T + +
Sbjct: 76 WSKGVFVVKQSDEDIHTANERRLKELIGDIAGKL------HTGRSR--NDQVVTDLKLF- 126
Query: 92 AMETNSRLIPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 149
M+ + +I L+++ + ++E D++ G +H Q A P+ Q + +
Sbjct: 127 -MKNSLSIISTHLLQLIKTLVERAAIEI-DVILPGYSHLQKAQPIRWSQFLLSHAVALTR 184
Query: 150 GIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALA 208
+R+ R+ L G G G L+ D ++ + E S+ N +A++
Sbjct: 185 DSERLGEVKKRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAIS 236
Query: 209 AHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPT 267
D VE + L K+A D+ + + G L L + GSS+MP K NP
Sbjct: 237 ERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGSSLMPQKKNPD 293
Query: 268 QCEALTMVCAQVIGNHVAI 286
E + +V G +I
Sbjct: 294 SLELIRSKAGRVFGRLASI 312
>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJW|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
Length = 474
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 28/259 (10%)
Query: 34 WQTGSGT--QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 91
W G QS+ + + R E++G G+ H RS+ ND T + +
Sbjct: 76 WSKGVFVVKQSDEDIHTANERRLKELIGDIAGKL------HTGRSR--NDQVVTDLKLF- 126
Query: 92 AMETNSRLIPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 149
M+ + +I L+++ + ++E D++ G H Q A P+ Q + +
Sbjct: 127 -MKNSLSIISTHLLQLIKTLVERAAIEI-DVILPGYDHLQKAQPIRWSQFLLSHAVALTR 184
Query: 150 GIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALA 208
+R+ R+ L G G G L+ D ++ + E S+ N +A++
Sbjct: 185 DSERLGEVKKRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAIS 236
Query: 209 AHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPT 267
D VE + L K+A D+ + + G L L + GSS+MP K NP
Sbjct: 237 ERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGSSLMPQKKNPD 293
Query: 268 QCEALTMVCAQVIGNHVAI 286
E + +V G +I
Sbjct: 294 SLELIRSKAGRVFGRLASI 312
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 447
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 104/259 (40%), Gaps = 28/259 (10%)
Query: 34 WQTGSGT--QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 91
W G QS+ + + R E++G G+ +N +S ND T + +
Sbjct: 58 WSKGVFVVKQSDEDIHTANERRLKELIGDIAGK--------LNTGRSRNDQVVTDLKLF- 108
Query: 92 AMETNSRLIPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 149
M+ + +I L+++ + ++E D++ G T+ Q A P+ Q + +
Sbjct: 109 -MKNSLSIISTHLLQLIKTLVERAAIEI-DVILPGYTNLQKAQPIRWSQFLLSHAVALTR 166
Query: 150 GIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALA 208
+R+ R+ L G G G L+ D ++ + E S+ N +A++
Sbjct: 167 DSERLGEVKKRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAIS 218
Query: 209 AHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPT 267
D VE + L K+A D+ + + G L L + GSS+MP K NP
Sbjct: 219 ERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGSSLMPQKKNPD 275
Query: 268 QCEALTMVCAQVIGNHVAI 286
E + +V G +I
Sbjct: 276 SLELIRSKSGRVFGRLASI 294
>pdb|1YIS|A Chain A, Structural Genomics Of Caenorhabditis Elegans:
Adenylosuccinate Lyase
Length = 478
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 52/278 (18%), Positives = 114/278 (41%), Gaps = 36/278 (12%)
Query: 89 IAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLG----------- 137
+ A ++ ++ + + L + S++ K++V +GRTH Q A+ +T+G
Sbjct: 117 LIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELL 176
Query: 138 ---QEFSGYTTQVKY-GIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEET 193
Q S + + ++ GI L G + L+ ++ + A +
Sbjct: 177 XAFQSLSEFRDKXRFRGIKGATGTQDSFLTLFAGDESKVEALD-------ELVTKKANFS 229
Query: 194 SLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP-- 251
+ +T + + F +L+ + A+ K+ D+R+L + GEL+ P
Sbjct: 230 NRFLITGQTYSRQQDSQLVF-----SLSLLGAAAKKVCTDIRVLQA-----FGELLEPFE 279
Query: 252 ENEPGSSIMPGKVNPTQCEALTMVCAQVI-GNHVAITVGGSNGHFELNVFKPMIASGLLH 310
+++ GSS P K NP + E + ++I A+T+ G E + L+
Sbjct: 280 KDQIGSSAXPYKKNPXKSERCCALSRKLINAPQEALTILADQG-LERTLDDSAGRRXLIP 338
Query: 311 SLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLV 348
+ L +A + +N G+ + + K++ + + +
Sbjct: 339 DVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFL 376
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 214 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEA 271
+E L ++ AS+ KI D+RLL + L E+ P + + GSS MP K NP + E
Sbjct: 252 IEVLSVLASLGASVHKICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSE- 305
Query: 272 LTMVCAQVIGNHVAITV 288
C + H+ V
Sbjct: 306 ----CCCSLARHLMTLV 318
>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|B Chain B, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|C Chain C, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|D Chain D, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate
Length = 503
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 214 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCE 270
+E L ++ AS+ KI D+RLL + L E+ P + + GSS MP K NP + E
Sbjct: 271 IEVLSVLASLGASVHKICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSE 324
>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|B Chain B, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|C Chain C, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|D Chain D, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
Length = 503
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 214 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCE 270
+E L ++ AS+ KI D+RLL + L E+ P + + GSS MP K NP + E
Sbjct: 271 IEVLSVLASLGASVHKICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSE 324
>pdb|3BHG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Legionella Pneumophila
Length = 459
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 58/156 (37%), Gaps = 14/156 (8%)
Query: 119 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVI-CCLPRMYQLAQGGTAVGTGLNT 177
D+ + RTH Q ATP T G+E + ++K ++ +P + A G
Sbjct: 166 DVAXLSRTHGQPATPTTXGKELVNFVARLKRPQQQLAEVLIPAKFNGAVGNYNAHVAAYP 225
Query: 178 KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVR-- 235
+ + A+ V L F + E HD E S + L+ D+
Sbjct: 226 EVDWRKHCANFVT-SLGLSFNAYTTQIE---PHDGIAEVSQIXVRINNILLDYTQDIWSY 281
Query: 236 -LLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCE 270
LG + + E E GSS P KVNP E
Sbjct: 282 ISLGYFKQKTIAE------EVGSSTXPHKVNPIDFE 311
>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 214 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCE 270
+E L ++ AS+ KI D+RLL + L E+ P + + GSS MP K NP + E
Sbjct: 252 IEVLSVLASLGASVHKICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSE 305
>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase
From Escherichia Coli
pdb|4A2C|B Chain B, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase
From Escherichia Coli
Length = 346
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 133 PLTLGQEFSGYTTQVKYGIDRV-----ICCLPRM 161
P+TLG EFSGY V G+D + + C+P +
Sbjct: 54 PITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLL 87
>pdb|1K62|A Chain A, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
pdb|1K62|B Chain B, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
Length = 464
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 102/270 (37%), Gaps = 26/270 (9%)
Query: 13 IMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDH 72
I+ +VAE F L S + ANE R E++G G+ H
Sbjct: 63 ILHGLDKVAEEWAQGTFKL-----NSNDEDIHTANE---RRLKELIGATAGKL------H 108
Query: 73 VNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDAT 132
RS+ ND T + + +T S L L L ++ ++ +D++ G TH Q A
Sbjct: 109 TGRSR--NDQVVTDLRLWMR-QTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQ 165
Query: 133 PLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEE 192
P+ + + +R++ R+ L G A+ G D ++ A E
Sbjct: 166 PIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIA---GNPLGVDRELLRA---E 219
Query: 193 TSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE 252
+ +T N +A + D E + L ++A D+ L + + +
Sbjct: 220 LNFGAITL-NSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLILYCTKEFSFVQ--LSDA 276
Query: 253 NEPGSSIMPGKVNPTQCEALTMVCAQVIGN 282
GSS+MP K NP E + +V G
Sbjct: 277 YSTGSSLMPRKKNPDSLELIRSKAGRVFGR 306
>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase
pdb|1AOS|B Chain B, Human Argininosuccinate Lyase
Length = 464
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 102/270 (37%), Gaps = 26/270 (9%)
Query: 13 IMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDH 72
I+ +VAE F L S + ANE R E++G G+ H
Sbjct: 63 ILHGLDKVAEEWAQGTFKL-----NSNDEDIHTANE---RRLKELIGATAGKL------H 108
Query: 73 VNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDAT 132
RS+ ND T + + +T S L L L ++ ++ +D++ G TH Q A
Sbjct: 109 TGRSR--NDQVVTDLRLWMR-QTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQ 165
Query: 133 PLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEE 192
P+ + + +R++ R+ L G A+ G D ++ A E
Sbjct: 166 PIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIA---GNPLGVDRELLRA---E 219
Query: 193 TSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE 252
+ +T N +A + D E + L ++A D+ L + + +
Sbjct: 220 LNFGAITL-NSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLILYCTKEFSFVQ--LSDA 276
Query: 253 NEPGSSIMPGKVNPTQCEALTMVCAQVIGN 282
GSS+MP K NP E + +V G
Sbjct: 277 YSTGSSLMPQKKNPDSLELIRSKAGRVFGR 306
>pdb|2FEL|A Chain A, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|B Chain B, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|D Chain D, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|C Chain C, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|E Chain E, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|F Chain F, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|G Chain G, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|H Chain H, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|I Chain I, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|J Chain J, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|L Chain L, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|K Chain K, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|A Chain A, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|B Chain B, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|D Chain D, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|C Chain C, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|E Chain E, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|F Chain F, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|H Chain H, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|G Chain G, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|I Chain I, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|J Chain J, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|L Chain L, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|K Chain K, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
Length = 359
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 210 HDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQC 269
D E + L+ V +L K D+ L+ +G I GSS MP K NP
Sbjct: 231 RDGIAEFANLLSLVTGTLGKFGQDIALMAE-----IGSEIRLSGGGGSSAMPHKQNPVNA 285
Query: 270 EALTMVC 276
E L +
Sbjct: 286 ETLVTLA 292
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 29 FPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHP 69
+PLVV+ G+G + N +V NR A + R ++VHP
Sbjct: 174 YPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPR-YQVVHP 213
>pdb|1IRI|A Chain A, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|B Chain B, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|C Chain C, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|D Chain D, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1JIQ|A Chain A, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|B Chain B, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|C Chain C, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|D Chain D, Crystal Structure Of Human Autocrine Motility Factor
pdb|1NUH|A Chain A, The Crystal Structure Of Human Phosphoglucose Isomerase
Complexed With 5-Phosphoarabinonate
Length = 558
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 282 NHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERI 337
NH ++T+ ++GH ++ K ++ + +R+L D + S RG++A RER+
Sbjct: 38 NHFSLTLNTNHGHILVDYSKNLVTEDV---MRMLVDLAKS------RGVEAARERM 84
>pdb|1JLH|A Chain A, Human Glucose-6-Phosphate Isomerase
pdb|1JLH|B Chain B, Human Glucose-6-Phosphate Isomerase
pdb|1JLH|C Chain C, Human Glucose-6-Phosphate Isomerase
pdb|1JLH|D Chain D, Human Glucose-6-Phosphate Isomerase
Length = 558
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 282 NHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERI 337
NH ++T+ ++GH ++ K ++ + +R+L D + S RG++A RER+
Sbjct: 38 NHFSLTLNTNHGHILVDYSKNLVTEDV---MRMLVDLAKS------RGVEAARERM 84
>pdb|1IAT|A Chain A, Crystal Structure Of Human Phosphoglucose
IsomeraseNEUROLEUKINAUTOCRINE MOTILITY FACTORMATURATION
FACTOR
Length = 557
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 282 NHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERI 337
NH ++T+ ++GH ++ K ++ + +R+L D + S RG++A RER+
Sbjct: 37 NHFSLTLNTNHGHILVDYSKNLVTEDV---MRMLVDLAKS------RGVEAARERM 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,495,045
Number of Sequences: 62578
Number of extensions: 448683
Number of successful extensions: 1112
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1008
Number of HSP's gapped (non-prelim): 78
length of query: 403
length of database: 14,973,337
effective HSP length: 101
effective length of query: 302
effective length of database: 8,652,959
effective search space: 2613193618
effective search space used: 2613193618
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)