RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 015619
(403 letters)
>gnl|CDD|215069 PLN00134, PLN00134, fumarate hydratase; Provisional.
Length = 458
Score = 798 bits (2063), Expect = 0.0
Identities = 353/405 (87%), Positives = 370/405 (91%), Gaps = 2/405 (0%)
Query: 1 MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
MEYG LDP IGKAIMQAA EVAEGKL+DHFPLVVWQTGSGTQ+NMNANEVIANRAAEILG
Sbjct: 52 MEYGLLDPDIGKAIMQAADEVAEGKLDDHFPLVVWQTGSGTQTNMNANEVIANRAAEILG 111
Query: 60 HKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFK 118
GEK VHPNDHVNRSQSSNDTFPT MHIAAA E +SRLIP LK LH SL +KS EFK
Sbjct: 112 GPVGEKSPVHPNDHVNRSQSSNDTFPTAMHIAAATEIHSRLIPALKELHESLRAKSFEFK 171
Query: 119 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 178
DIVKIGRTH QDA PLTLGQEFSGY TQVKYG++RV C LPR+Y+LAQGGTAVGTGLNTK
Sbjct: 172 DIVKIGRTHLQDAVPLTLGQEFSGYATQVKYGLNRVQCTLPRLYELAQGGTAVGTGLNTK 231
Query: 179 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLG 238
KGFD KIA+AVAEET LPFVTA NKFEALAAHDAFVE SGALNTVA SLMKIAND+RLLG
Sbjct: 232 KGFDEKIAAAVAEETGLPFVTAPNKFEALAAHDAFVELSGALNTVAVSLMKIANDIRLLG 291
Query: 239 SGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 298
SGPRCGLGEL LPENEPGSSIMPGKVNPTQCEALTMVCAQV+GNHVAITVGGS GHFELN
Sbjct: 292 SGPRCGLGELNLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGSAGHFELN 351
Query: 299 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYD 358
VFKP+IA LLHS+RLLGDASASF KNCVRGI+ANRERISKLLHESLMLVT+LNPKIGYD
Sbjct: 352 VFKPLIAYNLLHSIRLLGDASASFRKNCVRGIEANRERISKLLHESLMLVTALNPKIGYD 411
Query: 359 NAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 403
AAAVAKKAHKEGTTLK+AALKLGVL +EEFD LVVPEKM GPSD
Sbjct: 412 KAAAVAKKAHKEGTTLKEAALKLGVLTAEEFDELVVPEKMTGPSD 456
>gnl|CDD|234779 PRK00485, fumC, fumarate hydratase; Reviewed.
Length = 464
Score = 783 bits (2024), Expect = 0.0
Identities = 276/398 (69%), Positives = 313/398 (78%), Gaps = 1/398 (0%)
Query: 5 LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE 64
LD AI+ AA EV GK +DHFPL VWQTGSGTQSNMN NEVIANRA+E+LG + G
Sbjct: 65 LDAEKADAIVAAADEVIAGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGGELGS 124
Query: 65 KI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKI 123
K VHPNDHVN SQSSNDTFPT MHIAA + RL+P L+ L ++L +K+ EF DIVKI
Sbjct: 125 KKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAIVERLLPALEHLRDTLAAKAEEFADIVKI 184
Query: 124 GRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDV 183
GRTH QDATPLTLGQEFSGY Q+++GI+R+ LP +Y+LA GGTAVGTGLN GF
Sbjct: 185 GRTHLQDATPLTLGQEFSGYAAQLEHGIERIEAALPHLYELALGGTAVGTGLNAHPGFAE 244
Query: 184 KIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRC 243
++A +AE T LPFVTA NKFEALAAHDA VE SGAL T+A SLMKIAND+R L SGPRC
Sbjct: 245 RVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLASGPRC 304
Query: 244 GLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPM 303
GLGE+ LPENEPGSSIMPGKVNPTQCEALTMVCAQV+GN A+T GS G+FELNVFKP+
Sbjct: 305 GLGEISLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNDAAVTFAGSQGNFELNVFKPV 364
Query: 304 IASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAV 363
IA L S+RLL DA SF +CV GI+ NRERI +LL SLMLVT+LNP IGYD AA +
Sbjct: 365 IAYNFLQSIRLLADAMRSFADHCVVGIEPNRERIKELLERSLMLVTALNPHIGYDKAAKI 424
Query: 364 AKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 401
AKKAHKEG TLK+AAL+LG L EEFD V PEKM GP
Sbjct: 425 AKKAHKEGLTLKEAALELGYLTEEEFDRWVDPEKMTGP 462
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases. This subgroup
contains Escherichia coli fumarase C, human
mitochondrial fumarase, and related proteins. It is a
member of the Lyase class I family. Members of this
family for the most part catalyze similar
beta-elimination reactions in which a C-N or C-O bond is
cleaved with the release of fumarate as one of the
products. These proteins are active as tetramers. The
four active sites of the homotetrameric enzyme are each
formed by residues from three different subunits.
Fumarase catalyzes the reversible hydration/dehydration
of fumarate to L-malate during the Krebs cycle.
Length = 455
Score = 770 bits (1990), Expect = 0.0
Identities = 285/400 (71%), Positives = 319/400 (79%), Gaps = 2/400 (0%)
Query: 1 MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
E G LD AI+QAA EV GKL+DHFPLVVWQTGSGTQ+NMN NEVIANRA E+LG
Sbjct: 56 AELGLLDEEKADAIVQAADEVIAGKLDDHFPLVVWQTGSGTQTNMNVNEVIANRAIELLG 115
Query: 60 HKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFK 118
G K VHPNDHVN SQSSNDTFPT MHIAAA+ RL+P LK L ++L +K+ EFK
Sbjct: 116 GVLGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALALQERLLPALKHLIDALDAKADEFK 175
Query: 119 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 178
DIVKIGRTH QDATPLTLGQEFSGY Q+++ I R+ LPR+Y+LA GGTAVGTGLN
Sbjct: 176 DIVKIGRTHLQDATPLTLGQEFSGYAAQLEHAIARIEAALPRLYELALGGTAVGTGLNAH 235
Query: 179 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLG 238
GF K+A+ +AE T LPFVTA NKFEALAAHDA VE SGAL T+A SLMKIAND+R LG
Sbjct: 236 PGFAEKVAAELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLG 295
Query: 239 SGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 298
SGPRCGLGEL LPENEPGSSIMPGKVNPTQCEALTMV AQV+GN AIT+ GS+G+FELN
Sbjct: 296 SGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNDAAITIAGSSGNFELN 355
Query: 299 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYD 358
VFKP+I LL S+RLL DA SF CV GI+ NRERI++LL SLMLVT+LNP IGYD
Sbjct: 356 VFKPVIIYNLLQSIRLLADACRSFADKCVAGIEPNRERIAELLERSLMLVTALNPHIGYD 415
Query: 359 NAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 398
AA +AKKAHKEG TLK+AAL+LG L EEFD LV PEKM
Sbjct: 416 KAAKIAKKAHKEGLTLKEAALELGYLTEEEFDRLVDPEKM 455
>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and
fumarase class II enzymes. This group contains
aspartase (L-aspartate ammonia-lyase), fumarase class II
enzymes, and related proteins. It is a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. Aspartase catalyzes the
reversible deamination of aspartic acid. Fumarase
catalyzes the reversible hydration/dehydration of
fumarate to L-malate during the Krebs cycle.
Length = 450
Score = 719 bits (1860), Expect = 0.0
Identities = 244/395 (61%), Positives = 287/395 (72%), Gaps = 1/395 (0%)
Query: 1 MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
E G LD AI+QA EV GKL+D FPL VWQTGSGT +NMN NEVIANRA E+LG
Sbjct: 56 AELGLLDEEKADAIVQACDEVIAGKLDDQFPLDVWQTGSGTSTNMNVNEVIANRALELLG 115
Query: 60 HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKD 119
K+G+ VHPND VN SQSSND FP HIAAA+ RL+P L+ L ++L +K+ EF D
Sbjct: 116 GKKGKYPVHPNDDVNNSQSSNDDFPPAAHIAAALALLERLLPALEQLQDALDAKAEEFAD 175
Query: 120 IVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 179
IVKIGRTH QDA PLTLGQEFSGY Q+ I R+ L R+ +L GGTAVGTGLN
Sbjct: 176 IVKIGRTHLQDAVPLTLGQEFSGYAAQLARDIARIEAALERLRELNLGGTAVGTGLNAPP 235
Query: 180 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGS 239
G+ K+A+ +AE T LPFVTA N FEA AAHDA VE SGAL T+A SL KIAND+RLL S
Sbjct: 236 GYAEKVAAELAELTGLPFVTAPNLFEATAAHDALVEVSGALKTLAVSLSKIANDLRLLSS 295
Query: 240 GPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV 299
GPR GLGE+ LP N+PGSSIMPGKVNP EA+ MV AQVIGN AIT+ GS G ELNV
Sbjct: 296 GPRAGLGEINLPANQPGSSIMPGKVNPVIPEAVNMVAAQVIGNDTAITMAGSAGQLELNV 355
Query: 300 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDN 359
FKP+IA LL S+RLL +A SF CV GI+AN ER + + SLMLVT+LNP IGY+
Sbjct: 356 FKPVIAYNLLQSIRLLANACRSFRDKCVEGIEANEERCKEYVENSLMLVTALNPHIGYEK 415
Query: 360 AAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVV 394
AA +AK+A KEG TL++AAL+LG+L EE D ++
Sbjct: 416 AAEIAKEALKEGRTLREAALELGLLTEEELDEILD 450
>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion].
Length = 462
Score = 719 bits (1858), Expect = 0.0
Identities = 276/398 (69%), Positives = 315/398 (79%), Gaps = 1/398 (0%)
Query: 5 LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE 64
LDP AI+ AA EV GK +DHFPL VWQTGSGTQSNMN NEVIANRA+E+LG + G
Sbjct: 64 LDPEKADAIIAAADEVLAGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGGELGS 123
Query: 65 KI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKI 123
K VHPNDHVN SQSSNDTFPT MHIAA + +RLIP LK L +L +K+ EF D+VKI
Sbjct: 124 KKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAVVNRLIPALKHLIKTLAAKAEEFADVVKI 183
Query: 124 GRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDV 183
GRTH QDATPLTLGQEFSGY Q+++ ++R+ LP +Y+LA GGTAVGTGLN F
Sbjct: 184 GRTHLQDATPLTLGQEFSGYAAQLEHALERIEASLPHLYELAIGGTAVGTGLNAHPEFGE 243
Query: 184 KIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRC 243
K+A +AE T LPFVTA NKFEALAAHDA VE SGAL T+A SLMKIAND+R LGSGPRC
Sbjct: 244 KVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALRTLAVSLMKIANDIRWLGSGPRC 303
Query: 244 GLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPM 303
GLGE+ LPENEPGSSIMPGKVNPTQCEALTMV AQVIGN AI GS G+FELNVFKP+
Sbjct: 304 GLGEIELPENEPGSSIMPGKVNPTQCEALTMVAAQVIGNDAAIAFAGSQGNFELNVFKPV 363
Query: 304 IASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAV 363
IA L S+RLL DA SF +C+ GI+ N ERI +LL SLMLVT+LNP IGYD AA +
Sbjct: 364 IAYNFLQSVRLLADAMRSFADHCIVGIEPNEERIKELLERSLMLVTALNPHIGYDKAAKI 423
Query: 364 AKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 401
AKKAHKEGTTL++AAL+LG+L+ EEFD LV PEKM+GP
Sbjct: 424 AKKAHKEGTTLREAALELGLLSEEEFDKLVDPEKMVGP 461
>gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II. Putative
fumarases from several species (Mycobacterium
tuberculosis, Streptomyces coelicolor, Pseudomonas
aeruginosa) branch deeply, although within the same
branch of a phylogenetic tree rooted by aspartate
ammonia-lyase sequences, and score between the trusted
and noise cutoffs [Energy metabolism, TCA cycle].
Length = 458
Score = 669 bits (1728), Expect = 0.0
Identities = 278/398 (69%), Positives = 320/398 (80%), Gaps = 1/398 (0%)
Query: 4 GLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG 63
LD AI+QAA E+ GKL+DHFPLVVWQTGSGTQSNMN NEVIANRA E+LG K G
Sbjct: 61 KLDAKKADAIVQAADEILAGKLDDHFPLVVWQTGSGTQSNMNVNEVIANRAIELLGGKLG 120
Query: 64 EK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVK 122
K VHPNDHVN+SQSSNDTFPT MHIAA + ++LIP L+ L +L +KS EF IVK
Sbjct: 121 SKQPVHPNDHVNKSQSSNDTFPTAMHIAAVLAIKNQLIPALENLKKTLDAKSKEFAHIVK 180
Query: 123 IGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFD 182
IGRTH QDATPLTLGQEFSGY Q+++G++R+ LP +Y+LA GGTAVGTGLNT GFD
Sbjct: 181 IGRTHLQDATPLTLGQEFSGYVAQLEHGLERIAYSLPHLYELAIGGTAVGTGLNTHPGFD 240
Query: 183 VKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPR 242
K+A +A+ET LPFVTA NKFEALAAHDA VE GAL T+AASLMKIAND+R LGSGPR
Sbjct: 241 EKVAEEIAKETGLPFVTAPNKFEALAAHDAIVEAHGALKTLAASLMKIANDIRWLGSGPR 300
Query: 243 CGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKP 302
CGLGEL +PENEPGSSIMPGKVNPTQCEALTMVC QV+GN I GS G+FELNVFKP
Sbjct: 301 CGLGELFIPENEPGSSIMPGKVNPTQCEALTMVCVQVMGNDATIGFAGSQGNFELNVFKP 360
Query: 303 MIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAA 362
+I L S+RLL DA SF +CV GI+ N+ERI +LL+ SLMLVT+LNP IGYDNAA
Sbjct: 361 VIIYNFLQSVRLLSDAMESFRDHCVVGIEPNKERIQQLLNNSLMLVTALNPHIGYDNAAK 420
Query: 363 VAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 400
+AKKAHKEG TLK+AAL+LG+L+ EEFD VVPE+M+G
Sbjct: 421 IAKKAHKEGITLKEAALELGLLSEEEFDEWVVPEQMVG 458
>gnl|CDD|237031 PRK12273, aspA, aspartate ammonia-lyase; Provisional.
Length = 472
Score = 509 bits (1313), Expect = e-180
Identities = 187/403 (46%), Positives = 253/403 (62%), Gaps = 3/403 (0%)
Query: 1 MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
E G LD AI+ A E+ GKL+D F + V Q G+GT +NMNANEVIANRA E+LG
Sbjct: 63 KELGLLDEEKADAIVAACDEILAGKLHDQFVVDVIQGGAGTSTNMNANEVIANRALELLG 122
Query: 60 HKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFK 118
H++GE + VHPNDHVN SQS+ND +PT + IA + +L+ L+ L + +K+ EF
Sbjct: 123 HEKGEYQYVHPNDHVNMSQSTNDAYPTAIRIALLLSLR-KLLDALEQLQEAFEAKAKEFA 181
Query: 119 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 178
DI+K+GRT QDA P+TLGQEF Y + R+ + ++ G TA+GTGLN
Sbjct: 182 DILKMGRTQLQDAVPMTLGQEFGAYAVALAEDRKRLYRAAELLREVNLGATAIGTGLNAP 241
Query: 179 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLG 238
G+ + +AE T LP V AE+ EA AFVE SGAL +A L KI ND+RLL
Sbjct: 242 PGYIELVVEKLAEITGLPLVPAEDLIEATQDTGAFVEVSGALKRLAVKLSKICNDLRLLS 301
Query: 239 SGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 298
SGPR GL E+ LP + GSSIMPGKVNP E + VC QVIGN +T+ G ELN
Sbjct: 302 SGPRAGLNEINLPAVQAGSSIMPGKVNPVIPEVVNQVCFQVIGNDTTVTMAAEAGQLELN 361
Query: 299 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYD 358
V +P+IA L S+ +L +A + + C+ GI AN ER + + S+ +VT+LNP IGY+
Sbjct: 362 VMEPVIAYNLFESISILTNACRTLREKCIDGITANEERCREYVENSIGIVTALNPYIGYE 421
Query: 359 NAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 401
NAA +AK+A + G ++++ L+ G+L EE D+++ PE M P
Sbjct: 422 NAAEIAKEALETGKSVRELVLERGLLTEEELDDILSPENMTHP 464
>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional.
Length = 464
Score = 499 bits (1286), Expect = e-176
Identities = 230/398 (57%), Positives = 279/398 (70%), Gaps = 1/398 (0%)
Query: 5 LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE 64
L I + I QAA EV +G+ +D FPLVVWQTGSGTQSNMN NEVIA RA E+ G+ RG
Sbjct: 63 LPADIARLIEQAADEVLDGQHDDQFPLVVWQTGSGTQSNMNVNEVIAGRANELAGNGRGG 122
Query: 65 KI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKI 123
K VHPNDHVNRSQSSND FPT MHIAAA + +L+P + L L +S +VK
Sbjct: 123 KSPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEQLLPAIAELSGGLAEQSARHAKLVKT 182
Query: 124 GRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDV 183
GRTH DATP+T GQE S + Q+ Y + LP + +LAQGGTAVGTGLN GF
Sbjct: 183 GRTHMMDATPITFGQELSAFVAQLDYAERAIRAALPAVCELAQGGTAVGTGLNAPHGFAE 242
Query: 184 KIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRC 243
IA+ +A + LPFVTA NKF ALA H+ V SGAL T+A +LMKIAND+RLLGSGPR
Sbjct: 243 AIAAELAALSGLPFVTAPNKFAALAGHEPLVSLSGALKTLAVALMKIANDLRLLGSGPRA 302
Query: 244 GLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPM 303
GL E+ LP NEPGSSIMPGKVNPTQCEAL+M+ QV+GN I S GH +LNVFKP+
Sbjct: 303 GLAEVRLPANEPGSSIMPGKVNPTQCEALSMLACQVMGNDATIGFAASQGHLQLNVFKPV 362
Query: 304 IASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAV 363
I LL S+RLL D +F+++CV G++ + E+++ L LMLVT+LNP IGYD AA +
Sbjct: 363 IIHNLLQSIRLLADGCRNFQQHCVAGLEPDAEQMAAHLERGLMLVTALNPHIGYDKAAEI 422
Query: 364 AKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 401
AKKA+ EGTTL++AAL LG L E+FD V PE M+
Sbjct: 423 AKKAYAEGTTLREAALALGYLTDEQFDAWVRPENMLEA 460
>gnl|CDD|176462 cd01357, Aspartase, Aspartase. This subgroup contains Escherichia
coli aspartase (L-aspartate ammonia-lyase), Bacillus
aspartase and related proteins. It is a member of the
Lyase class I family, which includes both aspartase
(L-aspartate ammonia-lyase) and fumarase class II
enzymes. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. Aspartase catalyzes the reversible deamination
of aspartic acid.
Length = 450
Score = 497 bits (1281), Expect = e-175
Identities = 185/389 (47%), Positives = 254/389 (65%), Gaps = 2/389 (0%)
Query: 5 LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE 64
LD +AI++A E+ GKL+D F + V Q G+GT +NMNANEVIANRA E+LGH++GE
Sbjct: 61 LDEEKAEAIVKACDEIIAGKLHDQFVVDVIQGGAGTSTNMNANEVIANRALELLGHEKGE 120
Query: 65 -KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKI 123
+ VHPNDHVN SQS+ND +PT + +A + +L+ L L + +K+ EF D++K+
Sbjct: 121 YQYVHPNDHVNMSQSTNDVYPTALRLALILLLR-KLLDALAALQEAFQAKAREFADVLKM 179
Query: 124 GRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDV 183
GRT QDA P+TLGQEF Y T +K R+ R+ ++ GGTA+GTG+N G+
Sbjct: 180 GRTQLQDAVPMTLGQEFGAYATALKRDRARIYKARERLREVNLGGTAIGTGINAPPGYIE 239
Query: 184 KIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRC 243
+ ++E T LP AEN +A DAFVE SGAL +A L KIAND+RLL SGPR
Sbjct: 240 LVVEKLSEITGLPLKRAENLIDATQNTDAFVEVSGALKRLAVKLSKIANDLRLLSSGPRA 299
Query: 244 GLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPM 303
GLGE+ LP +PGSSIMPGKVNP E + V QVIGN + IT+ G ELNVF+P+
Sbjct: 300 GLGEINLPAVQPGSSIMPGKVNPVIPEVVNQVAFQVIGNDLTITMAAEAGQLELNVFEPV 359
Query: 304 IASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAV 363
IA LL S+ +L +A + + C+ GI AN ER + + S+ +VT+LNP IGY+ AA +
Sbjct: 360 IAYNLLESIDILTNAVRTLRERCIDGITANEERCREYVENSIGIVTALNPYIGYEAAAEI 419
Query: 364 AKKAHKEGTTLKDAALKLGVLNSEEFDNL 392
AK+A + G ++++ L+ G+L EE D +
Sbjct: 420 AKEALETGRSVRELVLEEGLLTEEELDEI 448
>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional.
Length = 473
Score = 470 bits (1212), Expect = e-165
Identities = 188/398 (47%), Positives = 255/398 (64%), Gaps = 2/398 (0%)
Query: 5 LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE 64
L I +AI+QA E+ GKL+D F + Q G+GT +NMNANEVIANRA E+LG ++G+
Sbjct: 66 LPRRIAEAIVQACDEILAGKLHDQFIVDPIQGGAGTSTNMNANEVIANRALELLGGEKGD 125
Query: 65 -KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKI 123
V PNDHVN +QS+ND FPT + IAA L+ + L + K+ EF ++K+
Sbjct: 126 YHYVSPNDHVNMAQSTNDVFPTAIRIAALNLL-EGLLAAMGALQDVFEEKAAEFDHVIKM 184
Query: 124 GRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDV 183
GRT QDA P+TLGQEFS Y +K R+ +Y++ GGTAVGTGLN +
Sbjct: 185 GRTQLQDAVPITLGQEFSAYARALKRDRKRIQQAREHLYEVNLGGTAVGTGLNADPEYIE 244
Query: 184 KIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRC 243
++ +A T LP V AE+ +A DAFVE SGAL A +L KIAND+RLL SGPR
Sbjct: 245 RVVKHLAAITGLPLVGAEDLVDATQNTDAFVEVSGALKVCAVNLSKIANDLRLLSSGPRT 304
Query: 244 GLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPM 303
GLGE+ LP +PGSSIMPGKVNP E + + QVIGN V IT+ G ELNV +P+
Sbjct: 305 GLGEINLPAVQPGSSIMPGKVNPVMPEVVNQIAFQVIGNDVTITLAAEAGQLELNVMEPV 364
Query: 304 IASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAV 363
IA LL S+ +L +A +F NCV+GI+AN ER + + +S+ + T+LNP IGY+ AA +
Sbjct: 365 IAFNLLESISILTNACRAFTDNCVKGIEANEERCKEYVEKSVGIATALNPHIGYEAAARI 424
Query: 364 AKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 401
AK+A G ++++ AL+ G+L+ EE D ++ P +M P
Sbjct: 425 AKEAIATGRSVRELALENGLLSEEELDLILDPFRMTHP 462
>gnl|CDD|223958 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and
metabolism].
Length = 471
Score = 456 bits (1176), Expect = e-159
Identities = 185/398 (46%), Positives = 255/398 (64%), Gaps = 2/398 (0%)
Query: 5 LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE 64
L I AI++A E+ +GK +D F + V+Q G+GT +NMNANEVIANRA E+LGH++GE
Sbjct: 67 LPKEIADAIVKACDEILDGKCHDQFVVDVYQGGAGTSTNMNANEVIANRALELLGHEKGE 126
Query: 65 -KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKI 123
+ +HPNDHVN SQS+ND +PT IA ++ +LI L+ L + K+ EF DI+K+
Sbjct: 127 YQYLHPNDHVNMSQSTNDAYPTAFRIAV-YKSLRKLIDALEDLIEAFERKAKEFADILKM 185
Query: 124 GRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDV 183
GRT QDA P+TLGQEF + +K I R+ + ++ GGTA+GTG+N KG+
Sbjct: 186 GRTQLQDAVPMTLGQEFGAFAVALKEDIKRIYRAAELLLEVNLGGTAIGTGINAPKGYIE 245
Query: 184 KIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRC 243
+ +AE T LP V AEN EA AFV SGAL +A L KI ND+RLL SGPR
Sbjct: 246 LVVKKLAEVTGLPLVPAENLIEATQDTGAFVMVSGALKRLAVKLSKICNDLRLLSSGPRA 305
Query: 244 GLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPM 303
GL E+ LP + GSSIMPGKVNP E + VC +VIGN IT+ G +LNV +P+
Sbjct: 306 GLNEINLPAVQAGSSIMPGKVNPVIPEVVNQVCFKVIGNDTTITMAAEAGQLQLNVMEPV 365
Query: 304 IASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAV 363
IA L S+ +L +A + + C+ GI AN ER + + S+ +VT+LNP IGY+NAA +
Sbjct: 366 IAYALFESISILTNACRNLREKCIDGITANEERCEEYVENSIGIVTALNPYIGYENAAII 425
Query: 364 AKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 401
AK+A + G ++++ L+ G+L EE D+++ PE M P
Sbjct: 426 AKEALETGKSVREVVLERGLLTEEELDDILSPENMTKP 463
>gnl|CDD|213564 TIGR00839, aspA, aspartate ammonia-lyase. This enzyme, aspartate
ammonia-lyase, shows local homology to a number of other
lyases, as modeled by Pfam model pfam00206. Fumarate
hydratase scores as high as 570 bits against this model
[Energy metabolism, Amino acids and amines].
Length = 468
Score = 390 bits (1004), Expect = e-133
Identities = 163/400 (40%), Positives = 237/400 (59%), Gaps = 3/400 (0%)
Query: 5 LDPAIGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG 63
+ +I AI+ A E+ GK +D FP+ V+Q G+GT NMN NEVIAN A E++GH++G
Sbjct: 63 IPESIANAIVAACDEILNNGKCHDQFPVDVYQGGAGTSVNMNTNEVIANLALELMGHQKG 122
Query: 64 EKIV-HPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVK 122
E +PNDHVN+SQS+ND +PT IA + +L+ + L + K+ EF DI+K
Sbjct: 123 EYQYLNPNDHVNKSQSTNDAYPTGFRIAV-YSSLIKLVDAINQLRDGFEQKAKEFADILK 181
Query: 123 IGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFD 182
+GRT QDA P+TLGQEF ++ ++ + + + ++ G TA+GTGLNT +
Sbjct: 182 MGRTQLQDAVPMTLGQEFEAFSILLEEEVKNIKRTAELLLEVNLGATAIGTGLNTPPEYS 241
Query: 183 VKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPR 242
+ +AE T LP V AEN EA + A+V GAL +A + KI ND+RLL SGPR
Sbjct: 242 PLVVKKLAEVTGLPCVPAENLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPR 301
Query: 243 CGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKP 302
GL E+ LPE + GSSIMP KVNP E + VC +VIGN +T+ G +LNV +P
Sbjct: 302 AGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTLAAEAGQLQLNVMEP 361
Query: 303 MIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAA 362
+I + S+ +L +A + CV GI AN+E + S+ +VT LNP IG+ N
Sbjct: 362 VIGQAMFESIHILTNACYNLTDKCVNGITANKEICEGYVFNSIGIVTYLNPFIGHHNGDI 421
Query: 363 VAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 402
V K + G ++++ L+ G+L EE D++ E ++ P+
Sbjct: 422 VGKICAETGKSVREVVLEKGLLTEEELDDIFSVENLMHPA 461
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase.
Length = 312
Score = 330 bits (848), Expect = e-112
Identities = 140/277 (50%), Positives = 167/277 (60%), Gaps = 13/277 (4%)
Query: 7 PAIGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEK 65
AI++A EVAE GK +D FPL V Q GSGT NMN NEVI E+LG
Sbjct: 47 KEEAAAIIKALDEVAEEGKADDAFPLKVIQEGSGTAVNMNLNEVIG----ELLGQL---- 98
Query: 66 IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGR 125
VHPND V+ QSSND PT + +A + + L+P L L ++L K+ EF D+VK GR
Sbjct: 99 -VHPNDKVHTGQSSNDQVPTALRLALKLALSEVLLPALGQLIDALKEKAKEFADVVKPGR 157
Query: 126 THTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRM-YQLAQGGTAVGTGLNTKKGFDVK 184
TH QDATP+TLGQE SGY + ++R+ LPR+ + GGTAVGTGLN F
Sbjct: 158 THLQDATPVTLGQELSGYAVALTRDLERLKQLLPRILVEPLGGGTAVGTGLNADPEFAEL 217
Query: 185 IASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCG 244
+A + T LP V A N FEA + DA VE SGAL +A L K AND+RLL SGP G
Sbjct: 218 LAKELGFFTGLP-VPAPNSFEATSDRDAVVEFSGALALLATHLSKFANDLRLLSSGP-FG 275
Query: 245 LGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIG 281
EL LPE EPGSSIMPGKVNP Q E L +V G
Sbjct: 276 FVELSLPEGEPGSSIMPGKVNPDQLELLRGKAGRVFG 312
>gnl|CDD|237743 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional.
Length = 479
Score = 336 bits (863), Expect = e-112
Identities = 165/398 (41%), Positives = 249/398 (62%), Gaps = 2/398 (0%)
Query: 5 LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE 64
L+ G AI +AAQE+ +GK +DHF + Q G+GT NMNANEVIANRA E+LG ++G+
Sbjct: 72 LELNKGGAIAEAAQEILDGKWHDHFIVDPIQGGAGTSMNMNANEVIANRALELLGMEKGD 131
Query: 65 KI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKI 123
+ PN HVN +QS+ND FPT +HIA L+ + +H+ K+ +F ++K+
Sbjct: 132 YHYISPNSHVNMAQSTNDAFPTAIHIATLNALE-GLLQTMGYMHDVFELKAEQFDHVIKM 190
Query: 124 GRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDV 183
GRTH QDA P+ LGQEF Y+ ++ + R+ +Y++ G TAVGTGLN +
Sbjct: 191 GRTHLQDAVPIRLGQEFKAYSRVLERDMKRIQQSRQHLYEVNMGATAVGTGLNADPEYIE 250
Query: 184 KIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRC 243
+ +A + LP V AE+ +A DA+ E S AL ++ KIAND+RL+ SGPR
Sbjct: 251 AVVKHLAAISELPLVGAEDLVDATQNTDAYTEVSAALKVCMMNMSKIANDLRLMASGPRV 310
Query: 244 GLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPM 303
GL E++LP +PGSSIMPGKVNP E + + QVIGN I + G ELNV +P+
Sbjct: 311 GLAEIMLPARQPGSSIMPGKVNPVMPEVINQIAFQVIGNDHTICLASEAGQLELNVMEPV 370
Query: 304 IASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAV 363
+ LL S+ ++ + +F NC++GI+AN +R+ + + +S+ ++T++NP IGY+ AA V
Sbjct: 371 LVFNLLQSISIMNNGFRAFTDNCLKGIEANEDRLKEYVEKSVGIITAVNPHIGYEAAARV 430
Query: 364 AKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 401
AK+A G ++++ +K GVL+ E+ + ++ P +M P
Sbjct: 431 AKEAIATGQSVRELCVKNGVLSQEDLELILDPFEMTHP 468
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 329 bits (846), Expect = e-111
Identities = 116/335 (34%), Positives = 157/335 (46%), Gaps = 27/335 (8%)
Query: 1 MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
E G L +AI+ A E+ EG D Q GSGT M EV+A RA E+
Sbjct: 16 AELGLLPKEAAEAILAALDEILEGIAADQV----EQEGSGTHDVMAVEEVLAERAGEL-- 69
Query: 60 HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKD 119
N + S++ A + L+P LK L ++L +K+ E KD
Sbjct: 70 ----------NGGYVHTGRSSNDIVDTALRLALRDALDILLPALKALIDALAAKAEEHKD 119
Query: 120 IVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 179
V GRTH QDA P TLG E + + +++ ++R+ L R+ L GG AVGTG N
Sbjct: 120 TVMPGRTHLQDAQPTTLGHELAAWAAELERDLERLEEALKRLNVLPLGGGAVGTGANAPP 179
Query: 180 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGS 239
++A + F A N +A++ D VE AL +A SL KIAND+RLL S
Sbjct: 180 IDRERVAELLGF-----FGPAPNSTQAVSDRDFLVELLSALALLAVSLSKIANDLRLLSS 234
Query: 240 GPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 298
G GE+ LP+ +PGSSIMP KVNP E + + +VIGN A+ G E N
Sbjct: 235 G---EFGEVELPDAKQPGSSIMPQKVNPVILELVRGLAGRVIGNLAALLEALKGGPLEDN 291
Query: 299 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQAN 333
V P+ L S LL A G++ N
Sbjct: 292 VDSPVEREALPDSFDLLDAALRLLTGVL-EGLEVN 325
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the
lyase class I family, histidine ammonia-lyase and
phenylalanine ammonia-lyase, which catalyze similar
beta-elimination reactions. Lyase class I_like
superfamily of enzymes that catalyze beta-elimination
reactions and are active as homotetramers. The four
active sites of the homotetrameric enzyme are each
formed by residues from three different subunits. This
superfamily contains the lyase class I family, histidine
ammonia-lyase and phenylalanine ammonia-lyase. The lyase
class I family comprises proteins similar to class II
fumarase, aspartase, adenylosuccinate lyase,
argininosuccinate lyase, and 3-carboxy-cis, cis-muconate
lactonizing enzyme which, for the most part catalyze
similar beta-elimination reactions in which a C-N or C-O
bond is cleaved with the release of fumarate as one of
the products. Histidine or phenylalanine ammonia-lyase
catalyze a beta-elimination of ammonia from histidine
and phenylalanine, respectively.
Length = 231
Score = 190 bits (485), Expect = 1e-58
Identities = 86/279 (30%), Positives = 109/279 (39%), Gaps = 62/279 (22%)
Query: 44 MNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNL 103
EV+A RA E+ G G +VH S++ T A + L+P L
Sbjct: 14 ALVEEVLAGRAGELAGGLHGSALVH-------KGRSSNDIGTTALRLALRDALDDLLPLL 66
Query: 104 KVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQ 163
K L ++L K+ K V GRTH QDA P+TLG E + + ++R+
Sbjct: 67 KALIDALALKAEAHKGTVMPGRTHLQDAQPVTLGYELRAWAQVLGRDLERL--------- 117
Query: 164 LAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTV 223
+AVAE AL
Sbjct: 118 ---------------------EEAAVAE------------------------ALDALALA 132
Query: 224 AASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNH 283
AA L KIA D+RLL SG LGE LP +PGSSIMP KVNP E + + VIGN
Sbjct: 133 AAHLSKIAEDLRLLLSGEFGELGEPFLP-GQPGSSIMPQKVNPVAAELVRGLAGLVIGNL 191
Query: 284 VAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASF 322
VA+ G N P + L SL LL DA
Sbjct: 192 VAVLTALKGGPERDNEDSPSMREILADSLLLLIDALRLL 230
>gnl|CDD|204481 pfam10415, FumaraseC_C, Fumarase C C-terminus. Fumarase C
catalyzes the stereo-specific interconversion of
fumarate to L-malate as part of the Kreb's cycle. The
full-length protein forms a tetramer with visible
globular shape. FumaraseC_C is the C-terminal 65
residues referred to as domain 3. The core of the
molecule consists of a bundle of 20 alpha-helices from
the five-helix bundle of domain 2. The projections from
the core of the tetramer are generated from domains 1
and 3 of each subunit. FumaraseC_C does not appear to be
part of either the active site or the activation site
but is helical in structure forming a little bundle.
Length = 55
Score = 97.9 bits (245), Expect = 1e-25
Identities = 32/55 (58%), Positives = 41/55 (74%)
Query: 347 LVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 401
LVT+LNP IGYD AA +AK+A K G TL++ AL+LG+L EE D ++ PE M GP
Sbjct: 1 LVTALNPHIGYDKAAKIAKEALKTGRTLREVALELGLLTEEELDEILDPENMTGP 55
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase
(ASL)_like. This group contains ASL, prokaryotic-type
3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and
related proteins. These proteins are members of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). pCMLE catalyzes the
cyclization of 3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone, in the beta-ketoadipate
pathway. ASL deficiency has been linked to several
pathologies including psychomotor retardation with
autistic features, epilepsy and muscle wasting.
Length = 381
Score = 98.3 bits (246), Expect = 9e-23
Identities = 80/286 (27%), Positives = 126/286 (44%), Gaps = 33/286 (11%)
Query: 76 SQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLT 135
SQ NDT + + A++ ++P+L L ++L ++E KD +GRTH Q A P T
Sbjct: 89 SQDINDT-ALALQLRDALD---IILPDLDALIDALAKLALEHKDTPMLGRTHGQHALPTT 144
Query: 136 LGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLN-TKKGFDVKIASAVAEETS 194
G++F+ + ++ ++R+ R+ G AVGT + KG +V VAE+
Sbjct: 145 FGKKFAVWAAELLRHLERLEEARERVLVGGISG-AVGTHASLGPKGPEV--EERVAEKLG 201
Query: 195 LPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--E 252
L + E D E AL +A +L KIA D+RLL R +GE+ P +
Sbjct: 202 LKVPPITTQIE---PRDRIAELLSALALIAGTLEKIATDIRLLQ---RTEIGEVEEPFEK 255
Query: 253 NEPGSSIMPGKVNPTQCEALT----MVCAQVIGNHVAITV----GGSNGHFELNVFKPMI 304
+ GSS MP K NP E + +V A + S+ E N+ P
Sbjct: 256 GQVGSSTMPHKRNPIDSENIEGLARLVRALAAPALENLVQWHERDLSDSSVERNIL-PDA 314
Query: 305 ASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTS 350
L +L L + + G+ N ER+ + L + L+ S
Sbjct: 315 FLLLDAALSRL--------QGLLEGLVVNPERMRRNLDLTWGLILS 352
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and
metabolism].
Length = 438
Score = 90.4 bits (225), Expect = 9e-20
Identities = 82/321 (25%), Positives = 134/321 (41%), Gaps = 30/321 (9%)
Query: 99 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 158
++P+LK L +L ++E KD +GRTH Q A P T G++F+ + ++ ++R+
Sbjct: 117 ILPDLKRLIEALAELALEHKDTPMLGRTHGQPAEPTTFGKKFANWLAELLRHLERLEEAE 176
Query: 159 PRMYQLAQGGTAVGTGLNTK-KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETS 217
R+ GG AVGT G +V VAE+ L + D E
Sbjct: 177 ERIIVGKIGG-AVGTLAALGDLGAEV--EERVAEKLGLKPAPISTQVS---PRDRIAEFF 230
Query: 218 GALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEALT-- 273
AL +A SL K A D+RLL R +GE+ P + + GSS MP K NP E +T
Sbjct: 231 SALALLAGSLEKFARDIRLLQ---RTEVGEVEEPFAKGQVGSSAMPHKRNPIDSENVTGL 287
Query: 274 --MVCAQVIGNHVAITV----GGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCV 327
+ A V + + ++ E + + +L L + E N
Sbjct: 288 ARVARALVSTLLENLVLWHERDLTDSSVERVILPDAFIA-ADGALNRLLNVLEGLEVNPE 346
Query: 328 RGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAV----AKKAHKEGTTLKDAALK--- 380
R ++ N + L+ +++ +G + A + A KA ++G + L
Sbjct: 347 R-MRRNLDLTLGLIASERVMLALRKKGMGREEAHELVREKAMKAWEQGKEFLELLLADER 405
Query: 381 -LGVLNSEEFDNLVVPEKMIG 400
L+ EE L+ P +G
Sbjct: 406 VTKYLSEEELLELLDPANYLG 426
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate
cycloisomerase (CMLE)_like. This subgroup contains
pCLME and related proteins, and belongs to the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. CMLE catalyzes the cyclization of
3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone in the beta-ketoadipate pathway.
This pathway is responsible for the catabolism of a
variety of aromatic compounds into intermediates of the
citric cycle in prokaryotic and eukaryotic
micro-organisms.
Length = 437
Score = 88.1 bits (219), Expect = 6e-19
Identities = 80/319 (25%), Positives = 128/319 (40%), Gaps = 50/319 (15%)
Query: 110 LHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGT 169
L + +D +GRTH Q A P+T G + + + +++ +R+ PR+ + GG
Sbjct: 129 LARLAATHRDTPMVGRTHLQHALPITFGLKVAVWLSELLRHRERLDELRPRVLVVQFGG- 187
Query: 170 AVGTGLN-TKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLM 228
A GT + +G V A+A E L A D E + L + +L
Sbjct: 188 AAGTLASLGDQGLAV--QEALAAELGL----GVPAIPWHTARDRIAELASFLALLTGTLG 241
Query: 229 KIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAI 286
KIA DV LL + +GE+ P + GSS MP K NP CE + A+ + A+
Sbjct: 242 KIARDVYLLM---QTEIGEVAEPFAKGRGGSSTMPHKRNPVGCELIV-ALARRVPGLAAL 297
Query: 287 TV---------GGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERI 337
+ H E P I +L + + G++ N +R+
Sbjct: 298 LLDAMVQEHERDAGAWHAEWIAL-PEIFLLASGALEQA--------EFLLSGLEVNEDRM 348
Query: 338 SKLLH--------ESLMLVTSLNPKIGYDNA----AAVAKKAHKEGTTLKDAALK----L 381
L E++M+ L PK+G A +A +EG L++ L+
Sbjct: 349 RANLDLTGGLILSEAVMMA--LAPKLGRQEAHDLVYEACMRAVEEGRPLREVLLEDPEVA 406
Query: 382 GVLNSEEFDNLVVPEKMIG 400
L+ EE D L+ P +G
Sbjct: 407 AYLSDEELDALLDPANYLG 425
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase. This family consists of
adenylosuccinate lyase, the enzyme that catalyzes step 8
in the purine biosynthesis pathway for de novo synthesis
of IMP and also the final reaction in the two-step
sequence from IMP to AMP [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 435
Score = 81.2 bits (201), Expect = 9e-17
Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 22/183 (12%)
Query: 99 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 158
++P LK L + L +VE+KD V +GRTH Q A P TLG++F+ + D + L
Sbjct: 116 ILPKLKQLIDRLKDLAVEYKDTVMLGRTHGQHAEPTTLGKKFALW-------ADEMKRQL 168
Query: 159 PRMYQLAQGGT------AVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDA 212
R+ Q + AVGT + ++ V E L V + E D
Sbjct: 169 ERLLQAKERIKVGGISGAVGTHAAAYPLVE-EVEERVTEFLGLKPVPISTQIE---PRDR 224
Query: 213 FVETSGALNTVAASLMKIANDVRLLGSGPRCGLGEL--ILPENEPGSSIMPGKVNPTQCE 270
E AL +A +L K A D+RLL R E+ + + GSS MP K NP E
Sbjct: 225 HAELLDALALLATTLEKFAVDIRLL---QRTEHFEVEEPFGKGQVGSSAMPHKRNPIDFE 281
Query: 271 ALT 273
+
Sbjct: 282 NVC 284
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed.
Length = 449
Score = 79.6 bits (197), Expect = 3e-16
Identities = 95/339 (28%), Positives = 149/339 (43%), Gaps = 74/339 (21%)
Query: 103 LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMY 162
LK L L K+ E K+ V IGRTH Q A P T G F+ + ++++ ++R+ PR+
Sbjct: 126 LKKLRGVLLKKAEEHKNTVCIGRTHGQHAVPTTYGMRFAIWASEIQRHLERLEQLKPRV- 184
Query: 163 QLAQGGTAVGT----GLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 218
+ Q AVGT G +KG +++ V E L V N+ H F+
Sbjct: 185 CVGQMTGAVGTQAAFG---EKGIEIQ--KRVMEILGLKPVLISNQVIQRDRHAEFMMF-- 237
Query: 219 ALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEALTMVC 276
L +A +L KI ++R L R +GE+ + + GSS MP K NP E +C
Sbjct: 238 -LANIATTLDKIGLEIRNL---QRTEIGEVEEEFGKKQVGSSTMPHKRNPITSE---QIC 290
Query: 277 --AQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASAS---FEKNCV---- 327
A+V+ ++V +P + + L R L ++S F ++CV
Sbjct: 291 GLARVVRSNV----------------EPALLNNPLWDERDLTNSSCERIIFPESCVLTDH 334
Query: 328 ---------RGIQANRERISK---LLH-----ESLMLVTSLNPK-IGYDNAAAV----AK 365
G++ N E I + L E++M+ L + +G A + A
Sbjct: 335 ILKLMIKVLEGLRFNPENIRRNLELTKGLIMAEAVMI--ELAKRGMGRQEAHELVRQAAM 392
Query: 366 KAHKEGTTLKDAALK----LGVLNSEEFDNLVVPEKMIG 400
KAH+EG LK+ L+ + L EE + L+ PE IG
Sbjct: 393 KAHEEGRHLKEVLLEDEEVMKYLTEEELEELLDPETYIG 431
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase
(ASL)_subgroup 1. This subgroup contains bacterial and
archeal proteins similar to ASL, a member of the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASL catalyzes two steps in the de novo purine
biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 387
Score = 76.1 bits (188), Expect = 4e-15
Identities = 58/200 (29%), Positives = 92/200 (46%), Gaps = 20/200 (10%)
Query: 79 SNDTFPTVMHIAAAM---ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLT 135
S+D V+ A A+ E ++ +LK L L K++E KD V +GRTH A P T
Sbjct: 91 SSD----VVDTALALQLREALDIILKDLKELLEVLKKKALEHKDTVMVGRTHGIHAEPTT 146
Query: 136 LGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSL 195
G +F+ + + K ++R+ R+ + + AVGT N ++ VAE+ L
Sbjct: 147 FGLKFALWYAEFKRHLERLKEARERI-LVGKISGAVGTYAN----LGPEVEERVAEKLGL 201
Query: 196 PFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--EN 253
+ + D E L +A++L KIA ++R L R + E+ P +
Sbjct: 202 KPEPISTQ---VIQRDRHAEYLSTLALIASTLEKIATEIRHL---QRTEVLEVEEPFSKG 255
Query: 254 EPGSSIMPGKVNPTQCEALT 273
+ GSS MP K NP E +
Sbjct: 256 QKGSSAMPHKRNPILSENIC 275
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional.
Length = 451
Score = 69.9 bits (171), Expect = 4e-13
Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 24/208 (11%)
Query: 78 SSNDTFPTVMHIAAAMETN---SRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPL 134
+SND T A A++ + S + ++K L +L E+KD +GRTH Q A+P+
Sbjct: 101 TSNDINDT----ATALQIHDFVSIIKDDIKNLMETLIKLIDEYKDSPMMGRTHGQHASPI 156
Query: 135 TLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNT-KKGFDVK-----IASA 188
T G +F+ Y ++ +DR+ R + G VGTG K D++ I
Sbjct: 157 TFGLKFAVYLDEMSRHLDRLTEMGDRAFAGKVLG-PVGTGAALGKDALDIQNRVMEILGI 215
Query: 189 VAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGEL 248
+E S V D ++E +N ++ +L KIA ++R L + E
Sbjct: 216 YSEIGSTQIVN----------RDRYIEYLSVINGISVTLEKIATEIRNLQRPEIDEVSEY 265
Query: 249 ILPENEPGSSIMPGKVNPTQCEALTMVC 276
E++ GSS MP KVNP E + +
Sbjct: 266 FDEESQVGSSSMPSKVNPINSENVVSLS 293
>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 452
Score = 66.6 bits (163), Expect = 6e-12
Identities = 99/361 (27%), Positives = 147/361 (40%), Gaps = 70/361 (19%)
Query: 76 SQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLT 135
SQ DT V+ + A++ L P+L L ++L + + + +GRT Q A P+T
Sbjct: 108 SQDIIDT-GLVLQLRDALD---LLEPDLDRLCDALATLAARHRATPMVGRTWLQQALPVT 163
Query: 136 LGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGT--GLNTKKGFDVKIASAVAEET 193
LG +F+G+ + R+ PR L Q G A GT L + V A A+A E
Sbjct: 164 LGLKFAGWLDALLRHRQRLAALRPRALVL-QFGGAAGTLASLGE-QALPV--AQALAAEL 219
Query: 194 SLPFVTAENKFEALAAH---DAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELIL 250
L AL H D E + AL +A +L KIA DV LL + +GE+
Sbjct: 220 QLA-------LPALPWHTQRDRIAEFASALGLLAGTLGKIARDVSLL---MQTEVGEVFE 269
Query: 251 P--ENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMI---- 304
P + GSS MP K NP C A+ + G + T +F M
Sbjct: 270 PAAAGKGGSSTMPHKRNPVGCAAVLTAATRAPG--LVAT-----------LFAAMPQEHE 316
Query: 305 -ASGLLHS--------LRLLGDASASFEKNCVRGIQANRERISK--------LLHESLML 347
A G H+ L A A + V G++ + R+ +L E++ML
Sbjct: 317 RALGGWHAEWDTLPELACLAAGALAQMAQ-IVEGLEVDAARMRANLDLTHGLILAEAVML 375
Query: 348 VTSLNPKIGYDNAAAV----AKKAHKEGTTLKDA----ALKLGVLNSEEFDNLVVPEKMI 399
L +IG +A + +K+A EG L+D L+ D L+ P +
Sbjct: 376 A--LADRIGRLDAHHLVEQASKRAVAEGRHLRDVLAEDPQVSAHLSPAALDRLLDPAHYL 433
Query: 400 G 400
G
Sbjct: 434 G 434
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes
argininosuccinate lyase, but may include examples of
avian delta crystallins, in which argininosuccinate
lyase activity may or may not be present and the
biological role is to provide the optically clear
cellular protein of the eye lens [Amino acid
biosynthesis, Glutamate family].
Length = 455
Score = 65.8 bits (161), Expect = 1e-11
Identities = 65/277 (23%), Positives = 104/277 (37%), Gaps = 33/277 (11%)
Query: 12 AIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPND 71
+ + +E EG + + I + +G G K+
Sbjct: 59 GLNELKEEGREGPFILDPDD------------EDIHMAIERELIDRVGEDLGGKL----- 101
Query: 72 HVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDA 131
H RS+ ND T + + + L L L ++L + + + + G TH Q A
Sbjct: 102 HTGRSR--NDQVATDLRLYLR-DHVLELAEALLDLQDALIELAEKHVETLMPGYTHLQRA 158
Query: 132 TPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVA 190
P+TL Y + +R+ L R+ G A+ GTG + + +A
Sbjct: 159 QPITLAHHLLAYAEMLLRDYERLQDALKRVNVSPLGSGALAGTGFPIDREY-------LA 211
Query: 191 EETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELIL 250
E VT EN +A++ D +E + L + A D+ L +G G + L
Sbjct: 212 ELLGFDAVT-ENSLDAVSDRDFILELLFVAALIMVHLSRFAEDLILWSTGE---FGFVEL 267
Query: 251 P-ENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAI 286
P E GSSIMP K NP E + +V GN +
Sbjct: 268 PDEFSSGSSIMPQKKNPDVAELIRGKTGRVQGNLTGM 304
>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate
cycloisomerase. Members of this family are
3-carboxy-cis,cis-muconate cycloisomerase, the enzyme
the catalyzes the second step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. All members of the seed alignment for
this model were chosen from within protocatechuate
degradation operons of at least three genes of the
pathway, from genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 338
Score = 59.0 bits (143), Expect = 1e-09
Identities = 65/207 (31%), Positives = 89/207 (42%), Gaps = 23/207 (11%)
Query: 72 HVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDA 131
+V+R +S D T + + L+ +L L ++L + +D GRT Q A
Sbjct: 92 YVHRGATSQDVIDTSLMLQLRDAL-DLLLADLGRLADALADLAARHRDTPMTGRTLLQQA 150
Query: 132 TPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGT--GLNTKKGFDVKIASAV 189
P T G + +G+ V DR+ R L GG A GT L T+ G +A+A+
Sbjct: 151 VPTTFGLKAAGWLAAVLRARDRLAALRTRALPLQFGG-AAGTLAALGTRGG---AVAAAL 206
Query: 190 AEETSLPFVTAENKFEALAAH---DAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLG 246
A LP AL H D E AL VA +L KIA D+ LL + +G
Sbjct: 207 AARLGLP-------LPALPWHTQRDRIAEFGSALALVAGALGKIAGDIALLS---QTEVG 256
Query: 247 ELILPENEP-GSSIMPGKVNPTQCEAL 272
E+ E GSS MP K NP L
Sbjct: 257 EVF--EAGGGGSSAMPHKRNPVGAALL 281
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and
metabolism].
Length = 459
Score = 56.1 bits (136), Expect = 1e-08
Identities = 86/362 (23%), Positives = 132/362 (36%), Gaps = 58/362 (16%)
Query: 48 EVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAM-----ETNSRLIPN 102
I R E +G G K+ H RS+ ND +A + + L+
Sbjct: 87 TAIEARLIERIGDV-GGKL-----HTGRSR--ND------QVATDLRLWLRDKLLELLEL 132
Query: 103 LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMY 162
+++L +L + E + V G TH Q A P+T Y + I+R+ L R+
Sbjct: 133 IRILQKALLDLAEEHAETVMPGYTHLQRAQPVTFAHHLLAYAEMLARDIERLRDALKRVN 192
Query: 163 QLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALN 221
G G GT + AE VT N +A++ D +E A
Sbjct: 193 VSPLGAGALAGTPFPIDRER-------TAELLGFDAVT-RNSLDAVSDRDFILEFLSAAA 244
Query: 222 TVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVI 280
+ L ++A D+ L S G + LP+ GSSIMP K NP E + +VI
Sbjct: 245 LIMVHLSRLAEDLILWSSPE---FGFIELPDEFSTGSSIMPQKKNPDVLELIRGKAGRVI 301
Query: 281 GNHVAITVGGSNG----HFELNVFKPMI---ASGLLHSLRLLGDASASFEKNCVRGIQAN 333
G + + +L K + L SLR+L V G+ N
Sbjct: 302 GALTGLLTIMKGLPLAYNRDLQEDKEPLFDSVDTLEDSLRVLAG--------MVSGLTVN 353
Query: 334 RERISKLLHESLMLVTSLN--------P-KIGYDNAAAVAKKAHKEGTTLKDAALKLGVL 384
+ER+ + T L P + ++ ++A + G L D L L L
Sbjct: 354 KERMREAAEAGFSTATDLADYLVRKGVPFREAHEIVGEAVRRAEERGKDLAD--LSLEEL 411
Query: 385 NS 386
S
Sbjct: 412 QS 413
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase
(argininosuccinase, ASAL). This group contains ASAL and
related proteins. It is a member of the Lyase class I
family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASAL is a cytosolic enzyme which catalyzes the
reversible breakdown of argininosuccinate to arginine
and fumarate during arginine biosynthesis. In ureotelic
species ASAL also catalyzes a reaction involved in the
production of urea. Included in this group are the major
soluble avian eye lens proteins from duck, delta 1 and
delta 2 crystallin. Of these two isoforms only delta 2
has retained ASAL activity. These crystallins may have
evolved by, gene recruitment of ASAL followed by gene
duplication. In humans, mutations in ASAL result in the
autosomal recessive disorder argininosuccinic aciduria.
Length = 435
Score = 54.1 bits (131), Expect = 6e-08
Identities = 70/284 (24%), Positives = 109/284 (38%), Gaps = 31/284 (10%)
Query: 78 SSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLG 137
S ND T + + + L+ L L +L ++ E D + G TH Q A P+T G
Sbjct: 86 SRNDQVATDLRLYL-RDALLELLELLLDLQRALLDRAEEHADTIMPGYTHLQRAQPITFG 144
Query: 138 QEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTA-VGTGLNTKKGFDVKIASAVAEETSLP 196
Y ++ ++R+ R+ G A GT + AE L
Sbjct: 145 HYLLAYAEMLERDLERLADAYKRVNVSPLGAGALAGTTFPIDRER-------TAEL--LG 195
Query: 197 FVT-AENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-E 254
F EN +A++ D +E A + L ++A D+ L + G + LP+
Sbjct: 196 FDGPTENSLDAVSDRDFVLEFLSAAALLMVHLSRLAEDLILWSTQEF---GFVELPDAYS 252
Query: 255 PGSSIMPGKVNPTQCEALTMVCAQVIGNHVAI--TVGG--SNGHFELNVFKPMI---ASG 307
GSSIMP K NP E + +VIG + T+ G + +L K +
Sbjct: 253 TGSSIMPQKKNPDVLELIRGKAGRVIGALAGLLTTLKGLPLAYNKDLQEDKEPLFDAVDT 312
Query: 308 LLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSL 351
L+ SLRLL + + N ER+ + T L
Sbjct: 313 LIASLRLLTG--------VISTLTVNPERMREAAEAGFSTATDL 348
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase.
Length = 474
Score = 53.2 bits (128), Expect = 1e-07
Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 13/193 (6%)
Query: 98 RLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICC 157
+ +K L +L + + D+V G TH Q A P+ L + Q++ R++ C
Sbjct: 141 VIRKRIKTLQVALVELAEKNVDLVVPGYTHLQRAQPVLLSHWLLSHVEQLERDAGRLVDC 200
Query: 158 LPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVET 216
PR+ G A+ GTGL + A + + N +A++ D +E
Sbjct: 201 RPRVNFCPLGSCALAGTGLPIDRFM---TAKDLGFTAPMR-----NSIDAVSDRDFVLEF 252
Query: 217 SGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMV 275
A + A L ++ + L S G + + GSSIMP K NP E +
Sbjct: 253 LFANSITAIHLSRLGEEWVLWASEE---FGFVTPSDAVSTGSSIMPQKKNPDPMELVRGK 309
Query: 276 CAQVIGNHVAITV 288
A+VIG+ V +
Sbjct: 310 SARVIGDLVTVLA 322
>gnl|CDD|176470 cd01598, PurB, PurB_like adenylosuccinases (adenylsuccinate lyase,
ASL). This subgroup contains EcASL, the product of the
purB gene in Escherichia coli, and related proteins. It
is a member of the Lyase class I family of the Lyase_I
superfamily. Members of the Lyase class I family
function as homotetramers to catalyze similar
beta-elimination reactions in which a Calpha-N or
Calpha-O bond is cleaved with the subsequent release of
fumarate as one of the products. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits. ASL catalyzes two
non-sequential steps in the de novo purine biosynthesis
pathway: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 425
Score = 53.0 bits (128), Expect = 1e-07
Identities = 57/198 (28%), Positives = 86/198 (43%), Gaps = 44/198 (22%)
Query: 87 MHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQ 146
+ I A N ++P LK + +SL + E+ D+ + RTH Q ATP TLG+E + +
Sbjct: 111 LMIKEAR--NEVILPLLKEIIDSLKKLAKEYADVPMLSRTHGQPATPTTLGKELAVFV-- 166
Query: 147 VKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIAS-------AVAEE--TSL-- 195
Y ++R L ++ L + AVG F+ + + +E TSL
Sbjct: 167 --YRLERQYKQLKQIEILGKFNGAVGN-------FNAHLVAYPDVDWRKFSEFFVTSLGL 217
Query: 196 ---PFVTA-ENKFEALAAHDAFVETSGAL---NTVAASLMKIANDVRLLGSGPRCGLGEL 248
P+ T E HD E AL NT+ L+ + D+ S G +
Sbjct: 218 TWNPYTTQIEP-------HDYIAELFDALARINTI---LIDLCRDIWGYIS---LGYFKQ 264
Query: 249 ILPENEPGSSIMPGKVNP 266
+ + E GSS MP KVNP
Sbjct: 265 KVKKGEVGSSTMPHKVNP 282
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase
(ASL)_subgroup 2. This subgroup contains mainly
eukaryotic proteins similar to ASL, a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). ASL deficiency has
been linked to several pathologies including psychomotor
retardation with autistic features, epilepsy and muscle
wasting.
Length = 436
Score = 50.8 bits (122), Expect = 7e-07
Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 30/187 (16%)
Query: 99 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 158
++P L + + L ++E+KD+ +G TH Q A T+G+ + + + +
Sbjct: 115 ILPKLAAVIDRLAEFALEYKDLPTLGFTHYQPAQLTTVGKRACLWIQDLLMDLRNLERLR 174
Query: 159 PRM-YQLAQGGTAVGTG---LNTKKGFDVKIAS---AVAEETSLPFV------TAENKFE 205
+ ++ +G GT L+ +G K+ + V ++ V T K +
Sbjct: 175 DDLRFRGVKG--TTGTQASFLDLFEGDHDKVEALDELVTKKAGFKKVYPVTGQTYSRKVD 232
Query: 206 ALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGK 263
++ AL+++ A+ KIA D+RLL L E+ P + + GSS MP K
Sbjct: 233 --------IDVLNALSSLGATAHKIATDIRLLA-----NLKEVEEPFEKGQIGSSAMPYK 279
Query: 264 VNPTQCE 270
NP + E
Sbjct: 280 RNPMRSE 286
>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional.
Length = 431
Score = 50.4 bits (121), Expect = 8e-07
Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 14/188 (7%)
Query: 99 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 158
L+ L+ L ++ ++ E ++ V IGR+H A P+T G + +G+ + +R + L
Sbjct: 113 LLEELEDLIQAIRYQAREHRNTVMIGRSHGIHAEPITFGFKLAGWLAETLRNRER-LVRL 171
Query: 159 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 218
+ Q AVGT NT D ++ + ++ L TA + + H +V+T
Sbjct: 172 REDIAVGQISGAVGTYANT----DPRVEAITCQKLGLKPDTASTQVISRDRHAEYVQT-- 225
Query: 219 ALNTVAASLMKIANDVRLLGSGPRCGLGEL--ILPENEPGSSIMPGKVNPTQCEALTMVC 276
L V ASL + A ++R L R + E+ + + GSS MP K NP + E L+ +
Sbjct: 226 -LALVGASLERFATEIRNL---QRTDVLEVEEYFAKGQKGSSAMPHKRNPIRSERLSGL- 280
Query: 277 AQVIGNHV 284
A+V+ ++
Sbjct: 281 ARVLRSYA 288
>gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional.
Length = 216
Score = 47.7 bits (114), Expect = 2e-06
Identities = 48/200 (24%), Positives = 76/200 (38%), Gaps = 23/200 (11%)
Query: 219 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQ 278
L +A SL K AN++RLL E + + GSS MP K NP E +T A+
Sbjct: 22 VLALIATSLEKFANEIRLL-QRSEIREVEEPFAKGQKGSSAMPHKRNPIGSERIT-GLAR 79
Query: 279 VIGNHVAITVGGSNGHFELNVF-KPM--IASGLLHSLRLLGDASASFEKNCVRGIQANRE 335
V+ +++ + E ++ IA L + L D + N + + E
Sbjct: 80 VLRSYLVTALENVPLWHERDLSHSSAERIA--LPDAF-LALDYILNRFVNILENLVVFPE 136
Query: 336 RISKLLHESLMLVTSLNP-----KIGYDNAAA------VAKKAHKEGTTLKDAALK---- 380
I + L ++L + + + G A A +A K L++
Sbjct: 137 NIERNLDKTLGFIATERVLLELVEKGMGREEAHELIREKAMEAWKNQKDLRELLEADERF 196
Query: 381 LGVLNSEEFDNLVVPEKMIG 400
L EE D L PE +G
Sbjct: 197 TKQLTKEELDELFDPEAFVG 216
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional.
Length = 435
Score = 48.4 bits (116), Expect = 4e-06
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 31/195 (15%)
Query: 99 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 158
L+ +L + +L ++ E KD IGR+H A P T G + + + + +R++
Sbjct: 116 LLADLDRVLAALKKRAFEHKDTPTIGRSHGIHAEPTTFGLKLARFYAEFARNRERLVAAR 175
Query: 159 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAA-------HD 211
+ A G AVGT N D ++ VA++ L K E ++ H
Sbjct: 176 EEIATCAISG-AVGTFAN----IDPRVEEHVAKKLGL-------KPEPVSTQVIPRDRHA 223
Query: 212 AFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQC 269
F T L +A+S+ ++A ++R L R + E + GSS MP K NP
Sbjct: 224 MFFAT---LGVIASSIERLAIEIRHL---QRTEVLEAEEFFSPGQKGSSAMPHKRNPVLT 277
Query: 270 EALT----MVCAQVI 280
E LT +V + V+
Sbjct: 278 ENLTGLARLVRSYVV 292
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional.
Length = 502
Score = 46.5 bits (110), Expect = 2e-05
Identities = 58/226 (25%), Positives = 91/226 (40%), Gaps = 24/226 (10%)
Query: 76 SQSSNDTFPTVMHIA-------AAMETNS------RLIPNLKVLHNSLHSKSVEFKDIVK 122
SQ + F + MHI M S RL+ + +L S+ + + K+ +
Sbjct: 99 SQEAKSDFVSNMHIGRSRNDMGVTMYRMSLRRYVLRLMEHHLLLQESILQLAADHKETIM 158
Query: 123 IGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFD 182
THTQ A P T G YT + + R + + + Y+L L+T F
Sbjct: 159 PAYTHTQPAQPTTFGH----YTLAIYDTMQRDLERMKKTYKLLNQSPMGAAALSTTS-FP 213
Query: 183 VKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPR 242
+K VA+ V EN ++A+A D +E S L + + + +D LL +
Sbjct: 214 IK-RERVADLLGFTNVI-ENSYDAVAGADYLLEVSSLLMVMMTNTSRWIHDFLLLATKEY 271
Query: 243 CGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITV 288
G+ + SSIMP K NP E + + +G A TV
Sbjct: 272 DGI--TVARPYVQISSIMPQKRNPVSIEHARAITSSALGE--AFTV 313
>gnl|CDD|236452 PRK09285, PRK09285, adenylosuccinate lyase; Provisional.
Length = 456
Score = 42.4 bits (101), Expect = 3e-04
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 99 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEF 140
L+P L+ L ++L + E+ D+ + RTH Q ATP TLG+E
Sbjct: 143 LLPALRELIDALKELAHEYADVPMLSRTHGQPATPTTLGKEM 184
Score = 30.5 bits (70), Expect = 1.8
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 252 ENEPGSSIMPGKVNP 266
E GSS MP KVNP
Sbjct: 290 AGEIGSSTMPHKVNP 304
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate
lyase/N-acetylglutamate synthase; Provisional.
Length = 614
Score = 40.9 bits (96), Expect = 0.001
Identities = 77/323 (23%), Positives = 120/323 (37%), Gaps = 45/323 (13%)
Query: 72 HVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDA 131
H RS+ ND T + + + +L+ L L + + + + V G TH Q A
Sbjct: 104 HTGRSR--NDQVATDLKLWCR-QQGQQLLLALDQLQQQMVNVAERHQGTVLPGYTHLQRA 160
Query: 132 TPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVA 190
P+T Y + R+ L R+ G G GT + A+A
Sbjct: 161 QPVTFAHWCLAYVEMFERDYSRLEDALTRLDTCPLGSGALAGTAYPIDR-------EALA 213
Query: 191 EETSLPFVTA-ENKFEALAAHDAFVETSGALNTVAASLM---KIANDVRLLGSGPRCGLG 246
+L F A N ++++ D +E ++ + S++ ++A D+ SG G
Sbjct: 214 H--NLGFRRATRNSLDSVSDRDHVMEL---MSVASISMLHLSRLAEDLIFYNSGES---G 265
Query: 247 ELILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAI--TVGGSNGHFELNVFKPM 303
+ L + GSS+MP K NP E + +V G + TV L K M
Sbjct: 266 FIELADTVTSGSSLMPQKKNPDALELIRGKTGRVYGALAGMMMTVKA----LPLAYNKDM 321
Query: 304 I--ASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAA 361
GL +L D C GI+ N ER T K GY NA
Sbjct: 322 QEDKEGLFDALDTWND-CMEMAALCFDGIKVNGER------------TLEAAKQGYANAT 368
Query: 362 AVAKKAHKEGTTLKDAALKLGVL 384
+A +G ++A +GV
Sbjct: 369 ELADYLVAKGIPFREAHHIVGVA 391
>gnl|CDD|178440 PLN02848, PLN02848, adenylosuccinate lyase.
Length = 458
Score = 39.7 bits (93), Expect = 0.002
Identities = 53/189 (28%), Positives = 80/189 (42%), Gaps = 34/189 (17%)
Query: 96 NSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVI 155
NS ++P + + ++ S + EF + + RTH Q A+P TLG+E + Y + R
Sbjct: 143 NSVVLPTMDEIIKAISSLAHEFAYVPMLSRTHGQPASPTTLGKEMA----NFAYRLSRQR 198
Query: 156 CCLPRMYQLAQGGTAVGTGLNTKKGFDVKIAS-------AVAEE--TSL-----PFVTAE 201
L + + AVG ++ +++ AVAEE TSL P+VT
Sbjct: 199 KQLSEVKIKGKFAGAVGN-------YNAHMSAYPEVDWPAVAEEFVTSLGLTFNPYVT-- 249
Query: 202 NKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMP 261
+ HD E A++ L+ D+ S G + I E GSS MP
Sbjct: 250 ----QIEPHDYMAELFNAVSRFNNILIDFDRDIWSYIS---LGYFKQITKAGEVGSSTMP 302
Query: 262 GKVNPTQCE 270
KVNP E
Sbjct: 303 HKVNPIDFE 311
>gnl|CDD|168324 PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 351
Score = 37.3 bits (87), Expect = 0.011
Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 124 GRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDV 183
G T Q A P+T+ + + + DR+ ++ L GG A GT L G
Sbjct: 152 GHTRMQAAIPITVADRLASWRAPLLRHRDRLEALRADVFPLQFGG-AAGT-LEKLGGKAA 209
Query: 184 KIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRC 243
+ + +A+ L E+ + + D + + L+ V SL K D+ L+
Sbjct: 210 AVRARLAKRLGL-----EDAPQWHSQRDFIADFAHLLSLVTGSLGKFGQDIALMAQ---- 260
Query: 244 GLGELILPENEPGSSIMPGKVNPTQCEAL 272
G+ I GSS MP K NP E L
Sbjct: 261 -AGDEISLSGGGGSSAMPHKQNPVAAETL 288
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 37.4 bits (88), Expect = 0.011
Identities = 53/202 (26%), Positives = 78/202 (38%), Gaps = 36/202 (17%)
Query: 78 SSNDTFPTVMHIAAAM-----ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDAT 132
S ND +A + + + L L +L + E D + G TH Q A
Sbjct: 110 SRND------QVATDLRLYLRDEIDEIAELLLELQKALLDLAEEHADTIMPGYTHLQRAQ 163
Query: 133 PLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTA-VGTGLNTKKGFDVKIASAVAE 191
P+T G Y + ++R+ R+ + G A GT + AE
Sbjct: 164 PVTFGHHLLAYAEMLARDLERLRDARKRVNRSPLGSAALAGTTFPIDRER-------TAE 216
Query: 192 ETSLPF--VTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELI 249
L F VT EN +A++ D +E A + + L ++A ++ L S G EL
Sbjct: 217 L--LGFDGVT-ENSLDAVSDRDFALEFLSAASLLMVHLSRLAEELILWSS-QEFGFVEL- 271
Query: 250 LPENEP-----GSSIMPGKVNP 266
P GSSIMP K NP
Sbjct: 272 -----PDAFSTGSSIMPQKKNP 288
>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional.
Length = 442
Score = 35.9 bits (83), Expect = 0.031
Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 16/202 (7%)
Query: 78 SSNDTFPTVMHIAAAMETNSRL---IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPL 134
+S+D T A A++ L I ++K L ++ +++E KD + +GR+H P+
Sbjct: 93 TSSDCIDT----AVALQMRDSLKLIIEDVKNLMEAIKKRALEHKDTLMVGRSHGIHGEPI 148
Query: 135 TLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETS 194
T G + + ++K + + + + + + A+G + +++ V EE
Sbjct: 149 TFGLVLAIWYDEIKRHLKALEHTME-VISVGKISGAMGNFAHAP----LELEELVCEELG 203
Query: 195 LPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENE 254
L N+ + D + + AL +A+S KIA +R L E +
Sbjct: 204 LKPAPVSNQ---VIQRDRYARLASALALLASSCEKIAVAIRHLQRTEVYEAEEYFSK-GQ 259
Query: 255 PGSSIMPGKVNPTQCEALTMVC 276
GSS MP K NP E +T +C
Sbjct: 260 KGSSAMPHKRNPVLSENITGLC 281
>gnl|CDD|219928 pfam08602, Mgr1, Mgr1-like, i-AAA protease complex subunit. The S.
cerevisiae Mgr1 protein has been shown to be required
for mitochondrial viability in yeast lacking
mitochondrial DNA. It is a mitochondrial inner membrane
protein, which interacts with Yme1 and is a new subunit
of the i-AAA protease complex.
Length = 362
Score = 33.7 bits (77), Expect = 0.17
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 305 ASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYD 358
+ GLL+S+ G + + + NR+RI KLLHE L V LN D
Sbjct: 254 SGGLLNSISNKGKYLEIYTE----LNEENRKRILKLLHEDLNEVNELNKAPRLD 303
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional.
Length = 455
Score = 33.0 bits (76), Expect = 0.30
Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 19/175 (10%)
Query: 119 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQG-GTAVGTGLNT 177
D V G TH Q A P+T Y + R+ L R+ G G GT
Sbjct: 148 DAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGSGALAGTAYEI 207
Query: 178 KKGFDVKIASAVAEETSLPFVTA-ENKFEALAAHDAFVETSGALNTVAASLM---KIAND 233
+ ++A L F +A N ++++ D +E L+ + S++ + A D
Sbjct: 208 DR---EQLAG------WLGFASATRNSLDSVSDRDHVLEL---LSDASISMVHLSRFAED 255
Query: 234 VRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITV 288
+ SG G EL GSS+MP K NP E + C +V G + +
Sbjct: 256 LIFFNSG-EAGFVELS-DRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMLM 308
>gnl|CDD|214497 smart00062, PBPb, Bacterial periplasmic substrate-binding proteins.
bacterial proteins, eukaryotic ones are in PBPe.
Length = 219
Score = 31.5 bits (72), Expect = 0.61
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 180 GFDVKIASAVAEETSLPF----VTAENKFEALAAHDAFVETSGALNT 222
GFDV +A A+A+E L V+ ++ AL + V +G T
Sbjct: 24 GFDVDLAKAIAKELGLKVEFVEVSFDSLLTALKSGKIDVVAAGMTIT 70
>gnl|CDD|235791 PRK06389, PRK06389, argininosuccinate lyase; Provisional.
Length = 434
Score = 31.8 bits (72), Expect = 0.74
Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 18/167 (10%)
Query: 124 GRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQG---GTAVGTGLNTKKG 180
G TH + A P+T + Y +K + I L + G G G +
Sbjct: 147 GYTHFRQAMPMT----VNTYINYIKSILYHHINNLDSFLMDLREMPYGYGSGYGSPSSVK 202
Query: 181 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSG 240
F+ ++E + + + S ++++A L +I D+ +
Sbjct: 203 FNQ-----MSELLGMEKNIKNPVYSSSLYIKTIENISYLISSLAVDLSRICQDIIIYYEN 257
Query: 241 PRCGLGELILP-ENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAI 286
G + +P E GSS+MP K NP E + A+ I I
Sbjct: 258 -----GIITIPDEFTTGSSLMPNKRNPDYLELFQGIAAESISVLSFI 299
>gnl|CDD|197308 cd09074, INPP5c, Catalytic domain of inositol polyphosphate
5-phosphatases. Inositol polyphosphate 5-phosphatases
(5-phosphatases) are signal-modifying enzymes, which
hydrolyze the 5-phosphate from the inositol ring of
specific 5-position phosphorylated phosphoinositides
(PIs) and inositol phosphates (IPs), such as PI(4,5)P2,
PI(3,4,5)P3, PI(3,5)P2, I(1,4,5)P3, and I(1,3,4,5)P4.
These enzymes are Mg2+-dependent, and belong to the
large EEP (exonuclease/endonuclease/phosphatase)
superfamily that contains functionally diverse enzymes
that share a common catalytic mechanism of cleaving
phosphodiester bonds. In addition to this INPP5c domain,
5-phosphatases often contain additional domains and
motifs, such as the SH2 domain, the Sac-1 domain, the
proline-rich domain (PRD), CAAX, RhoGAP
(RhoGTPase-activating protein), and SKICH [SKIP
(skeletal muscle- and kidney-enriched inositol
phosphatase) carboxyl homology] domains, that are
important for protein-protein interactions and/or for
the subcellular localization of these enzymes.
5-phosphatases incorporate into large signaling
complexes, and regulate diverse cellular processes
including postsynaptic vesicular trafficking, insulin
signaling, cell growth and survival, and endocytosis.
Loss or gain of function of 5-phosphatases is implicated
in certain human diseases. This family also contains a
functionally unrelated nitric oxide transport protein,
Cimex lectularius (bedbug) nitrophorin, which catalyzes
a heme-assisted S-nitrosation of a proximal thiolate;
the heme however binds at a site distinct from the
active site of the 5-phosphatases.
Length = 299
Score = 30.8 bits (70), Expect = 1.2
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 157 CLPRMYQLAQGGTAVGTGLNTK---KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAF 213
LP++ L G VGTG K KG V I +TS FV + LAA
Sbjct: 96 HLPQIKDLEVEGVTVGTGGGGKLGNKGG-VAI-RFQINDTSFCFVNSH-----LAAGQEE 148
Query: 214 VETS 217
VE
Sbjct: 149 VERR 152
>gnl|CDD|240082 cd04731, HisF, The cyclase subunit of imidazoleglycerol phosphate
synthase (HisF). Imidazole glycerol phosphate synthase
(IGPS) catalyzes the fifth step of histidine
biosynthesis, the formation of the imidazole ring. IGPS
converts
N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-
carboxamide ribonucleotide (PRFAR) to imidazole glycerol
phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide)
ribonucleotide (AICAR). This conversion involves two
tightly coupled reactions in distinct active sites of
IGPS. The two catalytic domains can be fused, like in
fungi and plants, or peformed by a heterodimer
(HisH-glutaminase and HisF-cyclase), like in bacteria.
Length = 243
Score = 30.5 bits (70), Expect = 1.4
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Query: 177 TKKGFDVKIASAVAEETSLPFV------TAENKFEALAAHDAFVETSGALNTVAASL 227
TKKG+D+++ AV+ ++P + E+ EA A AL AAS+
Sbjct: 176 TKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGA----DAAL---AASI 225
>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase;
Provisional.
Length = 347
Score = 30.2 bits (68), Expect = 2.1
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 86 VMHIAAAMETNSRLIPNLKVLHNSL---HSKSVEFKDIVKIGRTHTQDATPLTLGQEFSG 142
V + IP +K + L S + DI +I + + P+TLG EFSG
Sbjct: 5 VNDTDGIVRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFK-NGAHYYPITLGHEFSG 63
Query: 143 YTTQVKYGIDR-----VICCLP 159
Y V G+D + C+P
Sbjct: 64 YVEAVGSGVDDLHPGDAVACVP 85
>gnl|CDD|238078 cd00134, PBPb, Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as,
amino acids, peptides, sugars, vitamins and inorganic
ions. PBPs have two cell-membrane translocation
functions: bind substrate, and interact with the
membrane bound complex. A diverse group of periplasmic
transport receptors for lysine/arginine/ornithine (LAO),
glutamine, histidine, sulfate, phosphate, molybdate, and
methanol are included in the PBPb CD.
Length = 218
Score = 29.6 bits (67), Expect = 2.1
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 180 GFDVKIASAVAEETSLPF----VTAENKFEALAAHDAFVETSGALNT 222
GFDV +A A+A+E + V + AL + + +G T
Sbjct: 23 GFDVDLAKAIAKELGVKVKFVEVDWDGLITALKSGKVDLIAAGMTIT 69
>gnl|CDD|235034 PRK02395, PRK02395, hypothetical protein; Provisional.
Length = 279
Score = 29.7 bits (67), Expect = 2.6
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 3 YGLDPAIGKAIMQAAQEVA-EGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHK 61
G PA+ I A+ V + + + L V G GT+ N N+ + I A +
Sbjct: 109 VGTHPAMADVIAARARSVTGDPDVGEDTALAV--VGHGTERNENSAKAIYYHADRLRERG 166
Query: 62 R 62
R
Sbjct: 167 R 167
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 30.2 bits (68), Expect = 2.7
Identities = 43/219 (19%), Positives = 76/219 (34%), Gaps = 29/219 (13%)
Query: 129 QDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIAS 187
Q A P +LG + + + G G GT F +A
Sbjct: 565 QPALPGSLGHYLLAVDGALARETHALFALFEHIDVCPLGAGAGGGTTFPIDPEF---VAR 621
Query: 188 AVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGE 247
+ E A N +A+A+ D + A+ ++ L ++A D++L +
Sbjct: 622 LLGFEQP-----APNSLDAVASRDGVLHFLSAMAAISTVLSRLAQDLQLWTTRE---FAL 673
Query: 248 LILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHF--ELNVFKPMI 304
+ LP+ GSS++P K NP E + V G + + F PM
Sbjct: 674 VSLPDALTGGSSMLPQKKNPFLLEFVKGRAGVVAGALASASAALGKTPFSNSFEAGSPMN 733
Query: 305 ASGLLHSLRLLGDASASFEKNC------VRGIQANRERI 337
+ A A+ E + G++A++ R+
Sbjct: 734 G--------PIAQACAAIEDAAAVLVLLIDGLEADQARM 764
>gnl|CDD|189052 cd09882, PIN_MtRv0301, PIN domain of the Rv0301 toxin of
Mycobacterium tuberculosis and other uncharacterized,
annotated PilT protein domain proteins. Virulence
associated protein C (VapC)-like PIN (PilT N terminus)
domain of Mycobacterium tuberculosis protein Rv0301 and
similar bacterial proteins are included in this
subfamily. They are PIN domain homologs of the
Mycobacterium tuberculosis VapC and Neisseria
gonorrhoeae FitB toxins of the prokaryotic
toxin/antitoxin operons, VapBC and FitAB, respectively,
which are believed to be involved in growth inhibition
by regulating translation. These toxins are nearly
always co-expressed with an antitoxin, a cognate protein
inhibitor, forming an inert protein complex.
Disassociation of the protein complex activates the
ribonuclease activity of the toxin by an, as yet
undefined mechanism. VapC-like PIN domains are homologs
of flap endonuclease-1 (FEN1)-like PIN domains, but lack
the extensive arch/clamp region and the H3TH
(helix-3-turn-helix) domain, an atypical
helix-hairpin-helix-2-like region, seen in FEN1-like PIN
domains. PIN domains within this subgroup contain four
highly conserved acidic residues. These putative active
site residues are thought to bind Mg2+ and/or Mn2+ ions
and be essential for single-stranded ribonuclease
activity.
Length = 128
Score = 28.8 bits (65), Expect = 2.8
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 177 TKKGF------DVKIASAVAEETSLPFVTAENKFEALAAH 210
KKG D+ IA A A E L + + F+ +AA
Sbjct: 83 RKKGITIRSTVDLLIA-ATALEHGLTLLHNDRDFDTIAAV 121
>gnl|CDD|200222 TIGR02965, xanthine_xdhB, xanthine dehydrogenase, molybdopterin
binding subunit. Members of the protein family are the
molybdopterin-containing large subunit (or, in,
eukaryotes, the molybdopterin-binding domain) of
xanthine dehydrogenase, and enzyme that reduces the
purine pool by catabolizing xanthine to urate. This
model is based primarily on bacterial sequences; it does
not manage to include all eukaryotic xanthine
dehydrogenases and thereby discriminate them from the
closely related enzyme aldehyde dehydrogenase [Purines,
pyrimidines, nucleosides, and nucleotides, Other].
Length = 758
Score = 29.3 bits (66), Expect = 4.1
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 10/44 (22%)
Query: 163 QLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPF----VTAEN 202
L GGT +G GLNT K+A VAEE + +TA +
Sbjct: 461 HLNHGGTEMGQGLNT------KVAQVVAEEFQVDIDRVKITATD 498
>gnl|CDD|227510 COG5183, SSM4, Protein involved in mRNA turnover and stability [RNA
processing and modification].
Length = 1175
Score = 29.5 bits (66), Expect = 4.1
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 76 SQSSNDTFPTVMHIAAAMETN-SRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPL 134
S S+N+ V + + N SR + N++ + ++ H S F+ IV +
Sbjct: 259 SDSNNNVINPVSDNVPSRDMNDSRNVENVRPVRSNDHMNSFLFRPIVDSIS-------GM 311
Query: 135 TLGQEFS 141
TL FS
Sbjct: 312 TLPDSFS 318
>gnl|CDD|130598 TIGR01535, glucan_glucosid, glucan 1,4-alpha-glucosidase. Glucan
1,4-alpha-glucosidase catalyzes the hydrolysis of
terminal 1,4-linked alpha-D-glucose residues from
non-reducing ends of polysaccharides, releasing a
beta-D-glucose monomer. Some forms of this enzyme can
hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds
in polysaccharides as well [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 648
Score = 29.0 bits (65), Expect = 4.9
Identities = 12/57 (21%), Positives = 21/57 (36%)
Query: 6 DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKR 62
DP I++ E +G + D+ ++ N+ VI E+L K
Sbjct: 80 DPKRNALILKVTFEALKGSIGDYKLYLLLDPHLANTGGGNSGYVIKYANNEMLMAKG 136
>gnl|CDD|226118 COG3590, PepO, Predicted metalloendopeptidase [Posttranslational
modification, protein turnover, chaperones].
Length = 654
Score = 28.9 bits (65), Expect = 4.9
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 317 DASASFEKNCVRGIQANRERISKL-------LHESLMLVTSLNPKIGYDNAAAVAKKAHK 369
+A A E+ I+A + RISKL ++L + KIGY + K
Sbjct: 352 EAKADMEELVANLIKAYKARISKLDWMTPETREKALEKLNKFTAKIGYPDPWRYYSKLEI 411
Query: 370 EGTTLKDAALKLGVLN 385
+ +L L+ N
Sbjct: 412 KRDSLYGNVLRASAFN 427
>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog
Ypt1. Rab1/Ypt1 subfamily. Rab1 is found in every
eukaryote and is a key regulatory component for the
transport of vesicles from the ER to the Golgi
apparatus. Studies on mutations of Ypt1, the yeast
homolog of Rab1, showed that this protein is necessary
for the budding of vesicles of the ER as well as for
their transport to, and fusion with, the Golgi
apparatus. GTPase activating proteins (GAPs) interact
with GTP-bound Rab and accelerate the hydrolysis of GTP
to GDP. Guanine nucleotide exchange factors (GEFs)
interact with GDP-bound Rabs to promote the formation of
the GTP-bound state. Rabs are further regulated by
guanine nucleotide dissociation inhibitors (GDIs), which
facilitate Rab recycling by masking C-terminal lipid
binding and promoting cytosolic localization. Most Rab
GTPases contain a lipid modification site at the
C-terminus, with sequence motifs CC, CXC, or CCX. Lipid
binding is essential for membrane attachment, a key
feature of most Rab proteins. Due to the presence of
truncated sequences in this CD, the lipid modification
site is not available for annotation.
Length = 166
Score = 28.1 bits (63), Expect = 5.2
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 175 LNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGAL 220
L KK D A A+E +PF+ K A +AF+ + +
Sbjct: 119 LTDKKVVDYTEAKEFADELGIPFLETSAK-NATNVEEAFMTMAREI 163
>gnl|CDD|178459 PLN02868, PLN02868, acyl-CoA thioesterase family protein.
Length = 413
Score = 28.9 bits (65), Expect = 5.3
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 224 AASLMKIANDVRLLGSGPRCGLGELILPENEPG 256
++SL KIA V G GE ++ E EPG
Sbjct: 21 SSSLKKIAEVVVPKRYGK----GEYVVREGEPG 49
>gnl|CDD|153283 cd07599, BAR_Rvs167p, The Bin/Amphiphysin/Rvs (BAR) domain of
Saccharomyces cerevisiae Reduced viability upon
starvation protein 167 and similar proteins. BAR
domains are dimerization, lipid binding and curvature
sensing modules found in many different proteins with
diverse functions. This subfamily is composed of fungal
proteins with similarity to Saccharomyces cerevisiae
Reduced viability upon starvation protein 167 (Rvs167p)
and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S.
cerevisiae Rvs167p plays a role in regulation of the
actin cytoskeleton, endocytosis, and sporulation. It
forms a heterodimer with another BAR domain protein
Rvs161p. Rvs161p and Rvs167p share common functions but
are not interchangeable. Their BAR domains cannot be
replaced with each other and the overexpression of one
cannot suppress the mutant phenotypes of the other.
Rvs167p also interacts with the GTPase activating
protein (GAP) Gyp5p, which is involved in ER to Golgi
vesicle trafficking. BAR domains form dimers that bind
to membranes, induce membrane bending and curvature, and
may also be involved in protein-protein interactions.
Length = 216
Score = 28.4 bits (64), Expect = 5.3
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 66 IVHPNDHVNRSQSSNDTFPTVMHIAAAMET-NSRLIPNLKVLHNSLHSKSVEFKDIVK 122
IV P + V + T + A+E L+ L+ + + E K +K
Sbjct: 53 IVGPKESVGSHPAPESTLARLSRYVKALEELKKELLEELEFFEERVILPAKELKKYIK 110
>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional.
Length = 276
Score = 27.9 bits (62), Expect = 9.7
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 151 IDRVICCLPRMYQ---LAQGGTAVGTGLNTKKGFDVKIASAVA 190
+D VI L R++Q A G A+G GL D+++AS+ A
Sbjct: 98 LDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSA 140
>gnl|CDD|235510 PRK05573, rplU, 50S ribosomal protein L21; Validated.
Length = 103
Score = 26.6 bits (60), Expect = 9.9
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 55 AEILGHKRGEKIV 67
AE++ H RG+K++
Sbjct: 61 AEVVEHGRGKKVI 73
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.131 0.373
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,727,346
Number of extensions: 1858399
Number of successful extensions: 1772
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1702
Number of HSP's successfully gapped: 83
Length of query: 403
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 304
Effective length of database: 6,546,556
Effective search space: 1990153024
Effective search space used: 1990153024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.9 bits)