RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015619
(403 letters)
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken
structural genomics/proteomics in RSGI, structural
genomics, lyase; 1.80A {Thermus thermophilus} SCOP:
a.127.1.1
Length = 466
Score = 818 bits (2116), Expect = 0.0
Identities = 226/404 (55%), Positives = 280/404 (69%), Gaps = 1/404 (0%)
Query: 1 MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
+E G L I KAI+QAA+EV +GK +DHFPLVV+QTGSGTQ+NMN NEVIANRA+EILG
Sbjct: 61 LELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILG 120
Query: 60 HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKD 119
G K HPNDHVNR QSSNDTFPT M++A A+ + RL P ++ L + +K+ F
Sbjct: 121 KPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQ 180
Query: 120 IVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 179
IVK+GRTH DA P+TLGQE + Q+K + V +Y LA GGTAVGTGLN
Sbjct: 181 IVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHP 240
Query: 180 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGS 239
F +A +AEET LPF AEN+F ALAAHD V GA+ T+A +LMKI NDVR L S
Sbjct: 241 RFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLAS 300
Query: 240 GPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV 299
GP G+GE+ +P NEPGSSIMPGKVNPTQ EALTMV +V GN + GS G+F+LNV
Sbjct: 301 GPYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNV 360
Query: 300 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDN 359
+KP++A L S+ LL DA ASF+ + +GI+ N ERI + L ++ ML T+LN IGYD
Sbjct: 361 YKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKAIGYDK 420
Query: 360 AAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 403
AA + KKA KE TLK AAL+LG L EEFD +VVP ++ P +
Sbjct: 421 AAEIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKPHE 464
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase,
subunit active site; 2.60A {Saccharomyces cerevisiae}
SCOP: a.127.1.1
Length = 488
Score = 817 bits (2113), Expect = 0.0
Identities = 280/402 (69%), Positives = 321/402 (79%), Gaps = 1/402 (0%)
Query: 1 MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
G LDP I KAI QAA EVA GKL+DHFPLVV+QTGSGTQSNMNANEVI+NRA EILG
Sbjct: 86 ESLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILG 145
Query: 60 HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKD 119
K G K VHPN+H N+SQSSNDTFPTVMHIAA+++ + LIP L L N+L +KS EF
Sbjct: 146 GKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDH 205
Query: 120 IVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 179
IVKIGRTH QDATPLTLGQEFSGY QV+ GI RV L + LAQGGTAVGTGLNTK
Sbjct: 206 IVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKP 265
Query: 180 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGS 239
GFDVKIA +++ET L F TA N+FEALAAHDA VE SGALNT+A SL KIA D+R LGS
Sbjct: 266 GFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGS 325
Query: 240 GPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV 299
GPRCG EL+LPENEPGSSIMPGKVNPTQ EALT VC QV+GN+ AIT GS G FELNV
Sbjct: 326 GPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNV 385
Query: 300 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDN 359
FKP++ + LL+S+RL+ DA+ SF +CV GI+AN RI +LL +SLMLVT+LNPKIGYD
Sbjct: 386 FKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDA 445
Query: 360 AAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 401
A+ VAK AHK+G TLK++AL+LGVL +EFD VVPE M+GP
Sbjct: 446 ASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHMLGP 487
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics
consortium, alterna initiation, anti-oncogene, cell
cycle, disease mutation; 1.95A {Homo sapiens}
Length = 490
Score = 816 bits (2110), Expect = 0.0
Identities = 292/402 (72%), Positives = 336/402 (83%), Gaps = 1/402 (0%)
Query: 1 MEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 60
+YGLDP I AIM+AA EVAEGKLNDHFPLVVWQTGSGTQ+NMN NEVI+NRA E+LG
Sbjct: 88 QDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGG 147
Query: 61 KRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKD 119
+ G K VHPNDHVN+SQSSNDTFPT MHIAAA+E + L+P L+ LH++L +KS EF
Sbjct: 148 ELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDAKSKEFAQ 207
Query: 120 IVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 179
I+KIGRTHTQDA PLTLGQEFSGY QVKY + R+ +PR+Y+LA GGTAVGTGLNT+
Sbjct: 208 IIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAVGTGLNTRI 267
Query: 180 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGS 239
GF K+A+ VA T LPFVTA NKFEALAAHDA VE SGA+NT A SLMKIAND+R LGS
Sbjct: 268 GFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGS 327
Query: 240 GPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV 299
GPR GLGELILPENEPGSSIMPGKVNPTQCEA+TMV AQV+GNHVA+TVGGSNGHFELNV
Sbjct: 328 GPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNV 387
Query: 300 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDN 359
FKPM+ +LHS RLLGDAS SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD
Sbjct: 388 FKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDK 447
Query: 360 AAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 401
AA +AK AHK G+TLK+ A++LG L +E+FD V P+ M+GP
Sbjct: 448 AAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGP 489
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle
enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP:
a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A*
2fus_A* 3tv2_A
Length = 467
Score = 809 bits (2092), Expect = 0.0
Identities = 248/403 (61%), Positives = 300/403 (74%), Gaps = 2/403 (0%)
Query: 1 MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
+ G L AI QAA EV G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG
Sbjct: 60 EDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLG 119
Query: 60 HKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFK 118
RG + VHPND VN+SQSSND FPT MH+AA + +LIP LK L +L+ KS F
Sbjct: 120 GVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFA 179
Query: 119 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 178
DIVKIGRT+ QDATPLTLGQE SG+ +++ + + LP + +LA GGTAVGTGLNT
Sbjct: 180 DIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTH 239
Query: 179 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLG 238
+ ++A +A T PFVTA NKFEALA DA V+ GAL +AASLMKIANDVR L
Sbjct: 240 PEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLA 299
Query: 239 SGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 298
SGPRCG+GE+ +PENEPGSSIMPGKVNPTQCEALTM+C QV+GN VAI +GG++G+FELN
Sbjct: 300 SGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELN 359
Query: 299 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYD 358
VF+PM+ L S+RLL D SF K+C GI+ NRERI++LL+ESLMLVT+LN IGYD
Sbjct: 360 VFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYD 419
Query: 359 NAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 401
AA +AKKAHKEG TLK AAL LG L+ EFD+ V PE+M+G
Sbjct: 420 KAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQMVGS 462
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics,
ssgcid, lyase, tricarboxylic acid cycle; 2.40A
{Rickettsia prowazekii}
Length = 482
Score = 805 bits (2082), Expect = 0.0
Identities = 258/401 (64%), Positives = 306/401 (76%), Gaps = 2/401 (0%)
Query: 1 MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
E+G L+ I +I +A + G+ D+FPLVVWQTGSGTQ+NMN NEVIA+ A E L
Sbjct: 81 YEFGDLEYKIATSIDKAIDRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELT 140
Query: 60 HKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFK 118
K+G K VHPNDHVN+ QSSND+FPT MHIA + T +LIP L L L KS ++
Sbjct: 141 GKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTYLQDKSKDWD 200
Query: 119 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 178
I+KIGRTH QDATPLTL QEFSGY TQ++Y ++R+ L ++Y LAQGGTAVGTG+N+K
Sbjct: 201 KIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLAQGGTAVGTGINSK 260
Query: 179 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLG 238
GFD+K A VAE T PF TA NKFE+LAAHDA VE SG LNT+A SLMKIAND+RLLG
Sbjct: 261 IGFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLG 320
Query: 239 SGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 298
SGPRCGLGEL LPENEPGSSIMPGKVNPTQ EALTMVC QV+GNHV +T+ GSNGH ELN
Sbjct: 321 SGPRCGLGELHLPENEPGSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSNGHLELN 380
Query: 299 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYD 358
VFKP+I +L S+ LL D+ SF +CV+G++ N RI+ L +SLMLVT LNP IGYD
Sbjct: 381 VFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINTLRDKSLMLVTVLNPHIGYD 440
Query: 359 NAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 399
NAA +AK+AHK G TLK+AA KL L+ EEFD +VVPEKMI
Sbjct: 441 NAAKIAKEAHKYGITLKEAAKKLNFLSEEEFDKIVVPEKMI 481
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid
cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB:
4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Length = 495
Score = 786 bits (2031), Expect = 0.0
Identities = 208/409 (50%), Positives = 268/409 (65%), Gaps = 12/409 (2%)
Query: 1 MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
+ G L P AI+ AA E+A+G+ +D FP+ V+QTGSGT SNMN NEVIA+ AA+
Sbjct: 88 SDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAAK--- 144
Query: 60 HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKD 119
G +HPND VN SQSSNDTFPT HIAA + LIP L+ LH++L +K++++
Sbjct: 145 ---GGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHT 201
Query: 120 IVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 179
+VK GRTH DA P+TLGQEFSGY Q++ GI+RV CLPR+ +LA GGTAVGTGLN
Sbjct: 202 VVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGLNAPD 261
Query: 180 GFDVKIASAVAEETSLP-FVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLG 238
F V++ + + +T L TA N FEA AA D VE SGAL T+A SL KIAND+R +G
Sbjct: 262 DFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMG 321
Query: 239 SGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 298
SGP GL E+ LP+ +PGSSIMPGKVNP EA+T V AQVIGN AI GG+NG FELN
Sbjct: 322 SGPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELN 381
Query: 299 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYD 358
V+ PM+A +L S +LL + S F + C+ G+ AN E + +L S +VT LN IGY+
Sbjct: 382 VYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYE 441
Query: 359 NAAAVAKKAHKEGTTLKDAALKLGV----LNSEEFDNLVVPEKMIGPSD 403
AAAVAK+A KE T++ + G+ L+ E+ D + M
Sbjct: 442 EAAAVAKQALKERKTIRQTVIDRGLIGDRLSIEDLDRRLDVLAMAKAEQ 490
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} PDB:
1j3u_A 3r6v_A 3r6y_A
Length = 468
Score = 770 bits (1990), Expect = 0.0
Identities = 169/403 (41%), Positives = 251/403 (62%), Gaps = 3/403 (0%)
Query: 1 MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
ME G LD +G+ I++AA EV EGK ND F + Q G+GT NMNANEVIANRA E++G
Sbjct: 61 MEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMG 120
Query: 60 HKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFK 118
++G + PN HVN SQS+ND FPT HIA + ++LI K + K+ EF
Sbjct: 121 EEKGNYSKISPNSHVNMSQSTNDAFPTATHIAV-LSLLNQLIETTKYMQQEFMKKADEFA 179
Query: 119 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 178
++K+GRTH QDA P+ LGQEF Y + I+R+ +Y + G TAVGTGLN
Sbjct: 180 GVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNAD 239
Query: 179 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLG 238
+ + +A+ + P +A++ +A D + E S AL ++ KIAND+RL+
Sbjct: 240 PEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMA 299
Query: 239 SGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 298
SGPR GL E++LP +PGSSIMPGKVNP E + V QV GN + IT G FELN
Sbjct: 300 SGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELN 359
Query: 299 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYD 358
V +P++ L+ S+ ++ + SF +NC++GI+AN ER+ + + +S+ ++T++NP +GY+
Sbjct: 360 VMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYE 419
Query: 359 NAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 401
AA +A++A+ G ++++ +K GVL E+ + ++ P +MI P
Sbjct: 420 TAAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHP 462
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase;
HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Length = 478
Score = 752 bits (1943), Expect = 0.0
Identities = 159/405 (39%), Positives = 236/405 (58%), Gaps = 4/405 (0%)
Query: 1 MEYG-LDPAIGKAIMQAAQEV-AEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEIL 58
E + ++ AI+ A EV GK D FP+ V+Q G+GT NMN NEV+AN E++
Sbjct: 63 KELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELM 122
Query: 59 GHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEF 117
GH++GE ++PNDHVN+ QS+ND +PT IA +L+ + L K+VEF
Sbjct: 123 GHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLI-KLVDAINQLREGFERKAVEF 181
Query: 118 KDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNT 177
+DI+K+GRT QDA P+TLGQEF ++ +K + + + ++ G TA+GTGLNT
Sbjct: 182 QDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLNT 241
Query: 178 KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLL 237
K + +AE T P V AE+ EA + A+V GAL +A + KI ND+RLL
Sbjct: 242 PKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLL 301
Query: 238 GSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFEL 297
SGPR GL E+ LPE + GSSIMP KVNP E + VC +VIGN +T+ G +L
Sbjct: 302 SSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQL 361
Query: 298 NVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGY 357
NV +P+I + S+ +L +A + + C+ GI AN+E ++ S+ +VT LNP IG+
Sbjct: 362 NVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGH 421
Query: 358 DNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 402
N V K + G ++++ L+ G+L E D++ + ++ P+
Sbjct: 422 HNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQNLMHPA 466
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis,
epididymiti mastitis, dehydration of fumarate to malate,
KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Length = 478
Score = 748 bits (1933), Expect = 0.0
Identities = 164/400 (41%), Positives = 233/400 (58%), Gaps = 4/400 (1%)
Query: 1 MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
+ L AI+ A ++ +G L + F + V+Q G+GT SNMNANEVIANRA E LG
Sbjct: 81 YKLRQLPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHLG 140
Query: 60 HKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFK 118
RG+ +HPND VN SQS+ND +PT + +A + N ++ L L + +K EF
Sbjct: 141 RPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQN-QVQTALHRLIAAFEAKGREFA 199
Query: 119 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 178
++KIGRT QDA P+TLGQEF + ++ R+ ++ GGTA+GT +N
Sbjct: 200 TVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAIGTRINAS 259
Query: 179 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLG 238
+ + +++ + + N EA AFV SG L +A L KIAND+RLL
Sbjct: 260 HAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLS 319
Query: 239 SGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 298
SGPR GLGE+ LP +PGSSIMPGKVNP E++ VC QVIGN + +T+ +G +LN
Sbjct: 320 SGPRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLN 379
Query: 299 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYD 358
F+P+I +L S+RLLG A + + CV GI+AN ER ES+ L T+L P +GY
Sbjct: 380 AFEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGYA 439
Query: 359 NAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 398
AA +AK+A G T+ + A+ G L++ ++ P +M
Sbjct: 440 RAAEIAKQALASGQTVMEVAISKG-LDASALTIMLDPLRM 478
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic
degradation; 2.30A {Acinetobacter calcoaceticus} SCOP:
a.127.1.1
Length = 454
Score = 113 bits (284), Expect = 9e-28
Identities = 69/338 (20%), Positives = 128/338 (37%), Gaps = 50/338 (14%)
Query: 94 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 153
+ + + ++ + + S++ ++ V +GRT Q A P+TLG + + + + K +DR
Sbjct: 124 DALAIVQNQVQQCYETALSQAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDR 183
Query: 154 VICCLPRMYQLAQGGTAVGTGLNT-KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDA 212
+ R+ GG AVG+ + +G V A A++ L D
Sbjct: 184 INAIKARVLVAQLGG-AVGSLASLQDQGSIV--VEAYAKQLKLGQTACTW----HGERDR 236
Query: 213 FVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCE 270
VE + L + ++ K+A D L+ + + E+ P + GSS MP K NP
Sbjct: 237 IVEIASVLGIITGNVGKMARDWSLMM---QTEIAEVFEPTAKGRGGSSTMPHKRNPVAAA 293
Query: 271 ALTMVCAQVIGNHVAITVG---------GSNGHFELNVFKPMIASGLLHSLRLLGDASAS 321
++ A + ++ H E L +L A
Sbjct: 294 SVL-AAANRVPALMSSIYQSMVQEHERSLGAWHAEWLS--------LPEIFQLTAGALER 344
Query: 322 FEKNCVRGIQANRERISKLLH--------ESLMLVTSLNPKIG----YDNAAAVAKKAHK 369
+ ++G++ N E + + + E++M+ +L P +G + A K A
Sbjct: 345 T-LDVLKGMEVNAENMHQNIECTHGLIMAEAVMM--ALAPHMGRLNAHHVVEAACKTAVA 401
Query: 370 EGTTLKDAALK----LGVLNSEEFDNLVVPEKMIGPSD 403
E LKD + N + D + PE +G
Sbjct: 402 EQKHLKDIISQVDEVKQYFNPSQLDEIFKPESYLGNIQ 439
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase
class II cycloisomerase, molecular EV isomerase; HET:
CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Length = 450
Score = 111 bits (279), Expect = 4e-27
Identities = 76/338 (22%), Positives = 123/338 (36%), Gaps = 50/338 (14%)
Query: 94 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 153
+ + +L L ++L ++++ D +GRT Q ATP+TLG + +G + R
Sbjct: 120 DALDLIEADLGKLADTLSQQALKHADTPLVGRTWLQHATPVTLGMKLAGVLGALTRHRQR 179
Query: 154 VICCLPRMYQLAQGGTAVGTGLNT-KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDA 212
+ PR+ L GG A G+ K V A A+AE+ L D
Sbjct: 180 LQELRPRLLVLQFGG-ASGSLAALGSKAMPV--AEALAEQLKLTLPEQPWH----TQRDR 232
Query: 213 FVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCE 270
VE + L VA SL K D+ LL + GE+ P + GSS MP K NP
Sbjct: 233 LVEFASVLGLVAGSLGKFGRDISLLM---QTEAGEVFEPSAPGKGGSSTMPHKRNPVGAA 289
Query: 271 ALTMVCAQVIGNHVAITVG---------GSNGHFELNVFKPMIASGLLHSLRLLGDASAS 321
L A + ++ H E L L+ A
Sbjct: 290 VLI-GAATRVPGLLSTLFAAMPQEHERSLGLWHAEWET--------LPDICCLVSGALRQ 340
Query: 322 FEKNCVRGIQANRERISKLLH--------ESLMLVTSLNPKIG----YDNAAAVAKKAHK 369
+ G++ + R+ + L E++ + L ++G + ++A
Sbjct: 341 A-QVIAEGMEVDAARMRRNLDLTQGLVLAEAVSI--VLAQRLGRDRAHHLLEQCCQRAVA 397
Query: 370 EGTTLKDAALK----LGVLNSEEFDNLVVPEKMIGPSD 403
E L+ L+ EE D L+ P +G +
Sbjct: 398 EQRHLRAVLGDEPQVSAELSGEELDRLLDPAHYLGQAR 435
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
initiat YORK SGX research center for structural
genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Length = 451
Score = 110 bits (278), Expect = 5e-27
Identities = 73/342 (21%), Positives = 130/342 (38%), Gaps = 58/342 (16%)
Query: 94 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 153
+ + + ++ + +L + + +D GRTH Q A P+T G + + + + R
Sbjct: 118 DGLALISRRIESVRKALAALARNHRDTPMAGRTHLQHALPVTFGYKAAVWLSAFDRHAAR 177
Query: 154 VICCLPRMYQLAQGGTAVGTGLNT-KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDA 212
+ PR+ + G A GT + +G DV +A E +L + +A DA
Sbjct: 178 LEEISPRVLVVEFSG-ASGTLASLGTRGLDV--QRELARELNLGVPSITW----HSARDA 230
Query: 213 FVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEP------GSSIMPGKVNP 266
ET L V+ SL K+A D+ ++ LGE+ EP SS MP K NP
Sbjct: 231 VAETVQFLALVSGSLGKLAMDISIMM---TTELGEV----AEPFVRHRGASSTMPQKQNP 283
Query: 267 TQCEALTMVCAQVIGNHVAITVG---------GSNGHFELNVFKPMIASGLLHSLRLLGD 317
CE + A+++ NH + H E + + +
Sbjct: 284 VSCELIL-AGARIVRNHATSMLDAMIHDFERATGPWHLEWSA--------VPEGFAVASG 334
Query: 318 ASASFEKNCVRGIQANRERISKLLH--------ESLMLVTSLNPKIG----YDNAAAVAK 365
+ + G+Q +R+ + L E++M+ +L P G +D +
Sbjct: 335 ILYQA-EFMLGGLQVFPDRMRENLDHSRGLIVAEAVMM--ALAPHTGRKEAHDIVYLGCR 391
Query: 366 KAHKEGTTLKDAALK----LGVLNSEEFDNLVVPEKMIGPSD 403
+A ++ T L + L E +L P +G +
Sbjct: 392 RAVEDKTGLFEVLRTMPEVAKPLGEEALRDLTDPRNYLGSAG 433
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 100 bits (250), Expect = 3e-23
Identities = 70/338 (20%), Positives = 119/338 (35%), Gaps = 51/338 (15%)
Query: 94 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 153
+ N ++ +L+ + L +K+ E K + +GRTH A P T G + + ++K ++R
Sbjct: 119 QANEIILKDLENFVSILANKAKEHKYTIMMGRTHGVHAEPTTFGLKLGLWYEEMKRNVER 178
Query: 154 VICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAF 213
+ G AVGT N D + V E L + D
Sbjct: 179 FKQAANTVRVGKLSG-AVGTYAN----IDPFVEKYVCENLGLEAAPISTQ---TLQRDRH 230
Query: 214 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEA 271
L +A S+ K+A ++R L + E+ + + GSS MP K NP E
Sbjct: 231 AHYMSTLALIATSIEKMAVEIRGLQ---KSETREVEEAFAKGQKGSSAMPHKRNPIGSEN 287
Query: 272 LTMVCAQVIGNHVAITV---------GGSNGHFELNVFKPMIASGLLHSLRLLGDASASF 322
+T A+VI ++ S+ E + P L + L
Sbjct: 288 MT-GLARVIRGYMMTAYENVPLWHERDISHSSAERVIL-PDATIALNYMLNRF------- 338
Query: 323 EKNCVRGIQANRERISK--------LLHESLMLVTSLNPK-IG----YDNAAAVAKKAHK 369
N V+ + E + + + + +ML +L K + YD A +A +
Sbjct: 339 -GNIVKNLTVYPENMKRNMTRTYGLIYSQRVML--TLIDKGMVREEAYDIVQPKAMEAWE 395
Query: 370 EGTTLKDAALK----LGVLNSEEFDNLVVPEKMIGPSD 403
K+ L EE + E + D
Sbjct: 396 TQVQFKELVEADERITSKLTQEEINECFNYEHHMQHVD 433
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 96.6 bits (241), Expect = 3e-22
Identities = 73/338 (21%), Positives = 124/338 (36%), Gaps = 51/338 (15%)
Query: 94 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 153
E L+ +LK + L + +K IGRTH A P + G + G+ +++K + R
Sbjct: 107 EAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQR 166
Query: 154 VICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAF 213
+ + + G AVG N ++ L + + D
Sbjct: 167 LERAIEEVSYGKISG-AVGNYAN----VPPEVEEKALSYLGLKPEPVSTQ---VVPRDRH 218
Query: 214 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEA 271
L VAA + +IA ++R L R + E+ P + + GSS MP K NP CE
Sbjct: 219 AFYLSTLAIVAAGIERIAVEIRHLQ---RTEVLEVEEPFRKGQRGSSAMPHKKNPITCER 275
Query: 272 LTMVCAQVIGNHVAITV---------GGSNGHFELNVFKPMIASGLLHSLRLLGDASASF 322
LT ++++ +V ++ S+ E VF P L + +
Sbjct: 276 LT-GLSRMMRAYVDPSLENIALWHERDISHSSVERYVF-PDATQTLYYMIVTA------- 326
Query: 323 EKNCVRGIQANRERISKLLH--------ESLMLVTSLNPK-IG----YDNAAAVAKKAHK 369
N VR ++ N ER+ K + + ++L L K + YD A K
Sbjct: 327 -TNVVRNMKVNEERMKKNIDLTKGLVFSQRVLL--KLIEKGLTRKEAYDIVQRNALKTWN 383
Query: 370 EGTTLKDAALK----LGVLNSEEFDNLVVPEKMIGPSD 403
+ L+ ++ EE + L + D
Sbjct: 384 SEKHFLEYLLEDEEVKKLVTKEELEELFDISYYLKHVD 421
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation,
sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium
tumefaciens} PDB: 2fen_A
Length = 359
Score = 90.8 bits (226), Expect = 2e-20
Identities = 39/200 (19%), Positives = 64/200 (32%), Gaps = 26/200 (13%)
Query: 94 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 153
+ L L ++L + G T Q A +T+ +G+ ++ + R
Sbjct: 122 MAAEIIATRLGHLIDTLGDLASRDGHKPLTGYTRMQAAIGITVADRAAGWIAPLERHLLR 181
Query: 154 VICCLPRMYQLAQGGTAVGTGLNT-KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDA 212
+ + L GG A GT V + +A+ L + D
Sbjct: 182 LETFAQNGFALQFGG-AAGTLEKLGDNAGAV--RADLAKRLGLADRPQWH-----NQRDG 233
Query: 213 FVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEP------GSSIMPGKVNP 266
E + L+ V +L K D+ L+ +E GSS MP K NP
Sbjct: 234 IAEFANLLSLVTGTLGKFGQDIALMAE-----------IGSEIRLSGGGGSSAMPHKQNP 282
Query: 267 TQCEALTMVCAQVIGNHVAI 286
E L + A+
Sbjct: 283 VNAETLVTLARFNAVQISAL 302
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum
aerophilum} SCOP: a.127.1.1
Length = 403
Score = 86.5 bits (215), Expect = 7e-19
Identities = 63/306 (20%), Positives = 117/306 (38%), Gaps = 39/306 (12%)
Query: 94 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 153
+ + + + + L S + ++K + +GRTH Q A P+TLG +F+ Y ++ +
Sbjct: 110 RALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYYELYIACRQ 169
Query: 154 VICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAF 213
+ + GG AVGT + + +++ VAE LP + +A ++F
Sbjct: 170 -LALAEEFIRAKIGG-AVGTMASWGE-LGLEVRRRVAERLGLPHHVITTQ---VAPRESF 223
Query: 214 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALT 273
+ AL +AA ++A ++R L R +GE + E GSS MP K NPT E +
Sbjct: 224 AVLASALALMAAVFERLAVEIRELS---RPEIGE--VVEGGGGSSAMPHKANPTASERIV 278
Query: 274 MVCAQVIGNHVAITVG--------GSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKN 325
+ V +N E P L L
Sbjct: 279 SLARYVRALTHVAFENVALWHERDLTNSANERVWI-PEALLALDEILTSA--------LR 329
Query: 326 CVRGIQANRERISKLLHESLMLVTS------LNPKIG-----YDNAAAVAKKAHKEGTTL 374
++ + + ERI++ L ++L + + + + Y A V +
Sbjct: 330 VLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAKEVKALTFEYQKWP 389
Query: 375 KDAALK 380
+ ++
Sbjct: 390 VERLIE 395
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: AMP;
1.92A {Francisella tularensis subsp}
Length = 438
Score = 86.2 bits (214), Expect = 1e-18
Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 13/182 (7%)
Query: 94 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 153
++ S +I +L+ L +SL +K+ E K+I+ +GR+H A P++ GQ+F G + K +
Sbjct: 108 DSMSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSFGQKFLGAYVEFKRRLKD 167
Query: 154 VICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAF 213
+ + G AVG + A+ LP + + D
Sbjct: 168 LKDFQKDGLTVQFSG-AVGNYCI----LTTEDEKKAADILGLPVEEVSTQ---VIPRDRI 219
Query: 214 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEA 271
+ +A+++ ++A ++R L R + E+ + + GSS MP K NP E
Sbjct: 220 AKLISIHGLIASAIERLAVEIRHLH---RSDVFEVYEGFSKGQKGSSTMPHKKNPISTEN 276
Query: 272 LT 273
LT
Sbjct: 277 LT 278
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG; 1.90A
{Legionella pneumophila subsp}
Length = 459
Score = 73.1 bits (179), Expect = 3e-14
Identities = 47/222 (21%), Positives = 77/222 (34%), Gaps = 14/222 (6%)
Query: 50 IANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNS 109
+ ++ E K +H S+ N+ +M I A+ + P + + S
Sbjct: 103 LQDKFQENEQLKSCVAFIH---FACTSEDINNLAYALM-IKQAIAQV--IQPTIAEIMGS 156
Query: 110 LHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGT 169
+ + D+ + RTH Q ATP T+G+E + + R L + A+
Sbjct: 157 ITLLGKQHADVAMLSRTHGQPATPTTMGKELVNFV----ARLKRPQQQLAEVLIPAKFNG 212
Query: 170 AVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEA-LAAHDAFVETSGALNTVAASLM 228
AVG + + N + + HD E S + + L+
Sbjct: 213 AVGNYNAHVAAYPEVDWRKHCANFVTSLGLSFNAYTTQIEPHDGIAEVSQIMVRINNILL 272
Query: 229 KIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCE 270
D+ S G + E GSS MP KVNP E
Sbjct: 273 DYTQDIWSYIS---LGYFKQKTIAEEVGSSTMPHKVNPIDFE 311
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure
initiative, southeast collaboratory for structura
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 73.1 bits (180), Expect = 3e-14
Identities = 44/202 (21%), Positives = 80/202 (39%), Gaps = 30/202 (14%)
Query: 99 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 158
++ + + L + S++ K++V +GRTH Q A+ +T+G+ + ++ +
Sbjct: 127 ILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELLMAFQSLSEFR 186
Query: 159 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAA--------- 209
+M G A GT + F + A + VT + F
Sbjct: 187 DKMRFRGIKG-ATGTQDSFLTLFAGDESKVEALDE---LVTKKANFSNRFLITGQTYSRQ 242
Query: 210 HDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEP------GSSIMPGK 263
D+ + +L+ + A+ K+ D+R+L GEL EP GSS MP K
Sbjct: 243 QDSQLVF--SLSLLGAAAKKVCTDIRVL-----QAFGEL----LEPFEKDQIGSSAMPYK 291
Query: 264 VNPTQCEALTMVCAQVIGNHVA 285
NP + E + ++I
Sbjct: 292 KNPMKSERCCALSRKLINAPQE 313
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A
{Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Length = 462
Score = 73.1 bits (179), Expect = 3e-14
Identities = 48/196 (24%), Positives = 76/196 (38%), Gaps = 11/196 (5%)
Query: 76 SQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLT 135
S+ N+ +M A E ++P + L + L +V+++DI + RT Q ATP T
Sbjct: 123 SEDINNLSHALMLKTARDEV---ILPYWRQLIDGLKDLAVQYRDIPLLSRTAGQPATPST 179
Query: 136 LGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSL 195
+G+E + V Y ++R L ++ L + AVG + +EE
Sbjct: 180 IGKEMA----NVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVT 235
Query: 196 PFVTAENKFEA-LAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENE 254
N + + HD E + L+ DV + + E
Sbjct: 236 SLGIQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIAL---NHFKQKTIAGE 292
Query: 255 PGSSIMPGKVNPTQCE 270
GSS MP KVNP E
Sbjct: 293 IGSSTMPHKVNPIDFE 308
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
AMP-lyase, purin biosynthesis, adenylosuccinase DEFI
AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens}
PDB: 2vd6_A*
Length = 503
Score = 72.7 bits (179), Expect = 4e-14
Identities = 43/202 (21%), Positives = 73/202 (36%), Gaps = 30/202 (14%)
Query: 99 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 158
L+P L + + L + E + +G TH Q A T+G+ + + + +
Sbjct: 153 LLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVR 212
Query: 159 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAA--------- 209
+ G GT + + F+ + VT + F+
Sbjct: 213 DDLRFRGVKG-TTGTQASFLQLFEGDDHKVEQLDK---MVTEKAGFKRAFIITGQTYTRK 268
Query: 210 HDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEP------GSSIMPGK 263
D V + L ++ AS+ KI D+RLL L E+ EP GSS MP K
Sbjct: 269 VDIEVLS--VLASLGASVHKICTDIRLL-----ANLKEM----EEPFEKQQIGSSAMPYK 317
Query: 264 VNPTQCEALTMVCAQVIGNHVA 285
NP + E + ++ +
Sbjct: 318 RNPMRSERCCSLARHLMTLVMD 339
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G
consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB:
2hvg_A
Length = 465
Score = 69.5 bits (170), Expect = 4e-13
Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 9/174 (5%)
Query: 99 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 158
+IP L+ + L +VE+ + + RTH Q A+ T G+E + + ++ + + +
Sbjct: 142 VIPCLEKIMLKLKDLAVEYSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVI---- 197
Query: 159 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEE--TSLPFVTAENKFEALAAHDAFVET 216
R+ A+ AVG K +T + HD E
Sbjct: 198 RRVKVCAKFNGAVGNFNAHKVASKDTDWVNTIGLFLKKHFNLTYSIYCTQIQDHDYICEL 257
Query: 217 SGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCE 270
L +L+ + D+ L S L +L + E E GSS MP KVNP E
Sbjct: 258 CDGLARANGTLIDLCVDIWLYISN---NLLKLKVKEKEVGSSTMPHKVNPIDFE 308
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 4e-07
Identities = 57/368 (15%), Positives = 99/368 (26%), Gaps = 110/368 (29%)
Query: 94 ETNSRLIPNLKVLHNSLHS--KSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY-- 149
ET +L + + + KD+ QD L +E ++ +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDV--------QDMPKSILSKE------EIDHII 55
Query: 150 -------GIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAEN 202
G R+ L Q V L F + S + E P +
Sbjct: 56 MSKDAVSGTLRLFWTL-LSKQEEMVQKFVEEVLRINYKF---LMSPIKTEQRQPSMMTRM 111
Query: 203 KFEALAAHDAFVETSGALNTVAASLMKIANDVRL-----LGSGPRCGLGELILPENEPGS 257
++E L K N RL L R L EL P
Sbjct: 112 ----------YIEQRDRLYNDNQVFAKY-NVSRLQPYLKL----RQALLEL-----RPAK 151
Query: 258 SI----MPG--KVNPTQCEALTMVCA-----QVIGNHVA-ITVGGSNGHFELNVFKPMIA 305
++ + G K AL VC + + + + N + +
Sbjct: 152 NVLIDGVLGSGK----TWVAL-DVCLSYKVQCKMDFKIFWLNLKNCNSPETV----LEML 202
Query: 306 SGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE-----SL--------------- 345
LL+ + + + N I + + + +LL L
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 346 -----MLVTSLNPKIGYDNAAAVAKKA---HKEGTTLKDAALKL--GVLNSEEFDNLVVP 395
+L+T+ ++ +AA H T D L L+ D +P
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD---LP 319
Query: 396 EKM--IGP 401
++ P
Sbjct: 320 REVLTTNP 327
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.4 bits (88), Expect = 0.001
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 12/39 (30%)
Query: 334 RERISKLLHESLMLVTSLNPKIGY--DNAAAVAKKAHKE 370
++ + KL ++ SL Y D+A A+A KA E
Sbjct: 19 KQALKKL--QA-----SLKL---YADDSAPALAIKATME 47
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
1k62_A
Length = 468
Score = 39.1 bits (92), Expect = 0.002
Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 15/196 (7%)
Query: 94 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 153
+ S + +L L +L ++ D++ G TH Q A P+ Q + + +R
Sbjct: 129 NSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSER 188
Query: 154 VICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAEETSLPFVTA-ENKFEALAAHD 211
+ R+ L G A+ G L+ + + E L F + N +A++ D
Sbjct: 189 LGEVKKRINVLPLGSGALAGNPLDIDREM-------LRSE--LEFASISLNSMDAISERD 239
Query: 212 AFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCE 270
VE + L K+A D+ + + G L L + G+S+MP K NP E
Sbjct: 240 FVVEFLSFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGASLMPQKKNPDSLE 296
Query: 271 ALTMVCAQVIGNHVAI 286
+ +V G +I
Sbjct: 297 LIRSKAGRVFGRLASI 312
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.002
Identities = 52/332 (15%), Positives = 94/332 (28%), Gaps = 105/332 (31%)
Query: 7 PAIGKAIMQAAQEVAEGKL-----NDHFPLVVWQTG-------------SGTQSNMNANE 48
P IG ++Q A V KL + + TG + + + +
Sbjct: 239 PLIG--VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS- 295
Query: 49 VIANRAAEIL------GHKRGEKIVHPNDHVNRSQSSNDTFPTVM-------------HI 89
+A +L ++ P + S +N+ P+ M ++
Sbjct: 296 --VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 90 AAAMETNSRLIPNLKV---LHN------------SLHSKSVEFKDIVKIGRTHTQDATP- 133
+TNS L +V L N SL+ ++ + K Q P
Sbjct: 354 N---KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK-AKAPSGLDQSRIPF 409
Query: 134 ----LTLGQEF--------SGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGF 181
L F S I++ + + V +T G
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV---YDTFDGS 466
Query: 182 DVKIASAVAEETSLPFVTAEN-KFEALAAHDA--FVETSGALNTVAASLMKIANDVRLLG 238
D+++ S E + + K+E A ++ G
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD---------------------FG 505
Query: 239 SGPRCGLGELILPENEPGSS---IMPGKVNPT 267
G GLG L N+ G+ I+ G ++
Sbjct: 506 PGGASGLGVLTH-RNKDGTGVRVIVAGTLDIN 536
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase;
2.44A {Escherichia coli} SCOP: a.127.1.1
Length = 457
Score = 37.5 bits (88), Expect = 0.007
Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 15/192 (7%)
Query: 98 RLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICC 157
L+ + L ++L + +D V G TH Q A P+T Y + R+
Sbjct: 127 ELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDA 186
Query: 158 LPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAEETSLPFVT-AENKFEALAAHDAFVE 215
L R+ G A+ GT + +A L F + N ++++ D +E
Sbjct: 187 LKRLDVSPLGCGALAGTAYEIDREQ-------LAGW--LGFASATRNSLDSVSDRDHVLE 237
Query: 216 TSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTM 274
A L + A D+ +G G + L + GSS+MP K NP E +
Sbjct: 238 LLSAAAIGMVHLSRFAEDLIFFNTGE---AGFVELSDRVTSGSSLMPQKKNPDALELIRG 294
Query: 275 VCAQVIGNHVAI 286
C +V G +
Sbjct: 295 KCGRVQGALTGM 306
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus}
Length = 462
Score = 37.2 bits (87), Expect = 0.009
Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 17/194 (8%)
Query: 98 RLIPNLKVLHNSLHSKSVEFKDIVKI--GRTHTQDATPLTLGQEFSGYTTQVKYGIDRVI 155
L+ L L L ++ + D + + G TH Q A P+ L F Y +K R+
Sbjct: 128 ELLALLLALRRVLVREAEKHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRDAGRLE 187
Query: 156 CCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAEETSLPFVT-AENKFEALAAHDAF 213
R+ + G A+ GTG + F A E L F N +A+A+ D
Sbjct: 188 DAKERLNESPLGAAALAGTGFPIDRHF-------TARE--LGFKAPMRNSLDAVASRDFA 238
Query: 214 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEAL 272
+E ALN L ++A ++ L + G + +P+ GSSIMP K NP E +
Sbjct: 239 LEVLSALNIGMLHLSRMAEELILYSTEE---FGFVEVPDAFATGSSIMPQKKNPDILELI 295
Query: 273 TMVCAQVIGNHVAI 286
+V+G V +
Sbjct: 296 RAKAGRVLGAFVGL 309
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL
protein structure initiative, midwest center for
structural genomics, MCSG; 2.98A {Veillonella parvula}
Length = 349
Score = 29.9 bits (68), Expect = 1.4
Identities = 5/17 (29%), Positives = 9/17 (52%), Gaps = 2/17 (11%)
Query: 79 SNDTFPTVMHIAAAMET 95
+ND+ P MH+ +
Sbjct: 267 TNDSGP--MHVGISQGV 281
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
substrate channeling, amidotransferase, TIM-barrel AS A
SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
1ox4_A
Length = 555
Score = 29.7 bits (67), Expect = 1.8
Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 35/135 (25%)
Query: 113 KSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVK-----YGIDRVICCLPRMYQLAQG 167
K V + P G+++ Y +K + +L +
Sbjct: 409 KRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVW--------ELTRA 460
Query: 168 GTAVGTG---LN------TKKGFDVKIASAVAEETSLPFV------TAENKFEALAAHDA 212
A+G G LN + G+D+++ V + +P + E+ EA A
Sbjct: 461 CEALGAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRA 520
Query: 213 FVETSGALNTVAASL 227
L A +
Sbjct: 521 ----DACL---GAGM 528
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo
protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Length = 247
Score = 27.8 bits (63), Expect = 5.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 177 TKKGFDVKIASAVAEETSLP 196
TK G+D ++ V T+LP
Sbjct: 183 TKSGYDTEMIRFVRPLTTLP 202
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix,
zinc-LESS finger, hydrolase, DNA DAMA repair,
DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis
thaliana} PDB: 3twm_A* 3twk_A
Length = 310
Score = 28.0 bits (63), Expect = 5.5
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 262 GKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHF--ELNV 299
++ QCEAL +VI A+ V + F
Sbjct: 205 SSLSKEQCEALHTSIKEVIEK--AVEVDADSSQFPSNWIF 242
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion
protein, cobalamin, precorrin, novel fold, VIT; 2.10A
{Thermotoga maritima}
Length = 266
Score = 27.9 bits (63), Expect = 5.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 177 TKKGFDVKIASAVAEETSLP 196
TK G+D ++ V T+LP
Sbjct: 183 TKSGYDTEMIRFVRPLTTLP 202
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics,
NYSGXRC, LPS biosynthetic pathway, PSI, protein
structure initiative; 2.00A {Escherichia coli} SCOP:
c.87.1.7
Length = 348
Score = 27.7 bits (62), Expect = 6.6
Identities = 7/17 (41%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
Query: 79 SNDTFPTVMHIAAAMET 95
+ND+ MH+AAA+
Sbjct: 267 TNDSGL--MHVAAALNR 281
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF,
half barrel, de novo protein; 3.10A {Thermotoga
maritima} PDB: 2lle_A
Length = 237
Score = 27.5 bits (62), Expect = 6.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 177 TKKGFDVKIASAVAEETSLP 196
TK G+D ++ V T+LP
Sbjct: 157 TKSGYDTEMIRFVRPLTTLP 176
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta
barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans}
SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Length = 907
Score = 28.0 bits (63), Expect = 7.5
Identities = 4/36 (11%), Positives = 7/36 (19%), Gaps = 3/36 (8%)
Query: 162 YQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPF 197
L G G + + A +
Sbjct: 646 VTLGNSWEDHGQGADAGS---LGTAHEALRPLGITP 678
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A
{Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Length = 326
Score = 27.2 bits (61), Expect = 9.3
Identities = 6/17 (35%), Positives = 9/17 (52%), Gaps = 2/17 (11%)
Query: 79 SNDTFPTVMHIAAAMET 95
S DT H+ AA++
Sbjct: 259 SVDTGL--SHLTAALDR 273
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum
aerophilum} SCOP: c.1.2.1
Length = 253
Score = 27.1 bits (61), Expect = 9.5
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 177 TKKGFDVKIASAVAEETSLP 196
T G+DV++ VA+ +P
Sbjct: 181 TGLGYDVELIRRVADSVRIP 200
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.1.2.1
Length = 252
Score = 27.1 bits (61), Expect = 9.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 177 TKKGFDVKIASAVAEETSLP 196
TK+G+D+++ VAE +P
Sbjct: 179 TKEGYDLRLTRMVAEAVGVP 198
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis,
lyase, phosphate-binding sites; 1.45A {Thermotoga
maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A
1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Length = 253
Score = 27.1 bits (61), Expect = 9.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 177 TKKGFDVKIASAVAEETSLP 196
TK G+D ++ V T+LP
Sbjct: 178 TKSGYDTEMIRFVRPLTTLP 197
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.373
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,910,207
Number of extensions: 355909
Number of successful extensions: 836
Number of sequences better than 10.0: 1
Number of HSP's gapped: 797
Number of HSP's successfully gapped: 46
Length of query: 403
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 307
Effective length of database: 4,021,377
Effective search space: 1234562739
Effective search space used: 1234562739
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)