RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015619
(403 letters)
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 459
Score = 391 bits (1006), Expect = e-134
Identities = 278/400 (69%), Positives = 319/400 (79%), Gaps = 1/400 (0%)
Query: 1 MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
G LDP I KAI QAA EVA GKL+DHFPLVV+QTGSGTQSNMNANEVI+NRA EILG
Sbjct: 60 ESLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILG 119
Query: 60 HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKD 119
K G K VHPN+H N+SQSSNDTFPTVMHIAA+++ + LIP L L N+L +KS EF
Sbjct: 120 GKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDH 179
Query: 120 IVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 179
IVKIGRTH QDATPLTLGQEFSGY QV+ GI RV L + LAQGGTAVGTGLNTK
Sbjct: 180 IVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKP 239
Query: 180 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGS 239
GFDVKIA +++ET L F TA N+FEALAAHDA VE SGALNT+A SL KIA D+R LGS
Sbjct: 240 GFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGS 299
Query: 240 GPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV 299
GPRCG EL+LPENEPGSSIMPGKVNPTQ EALT VC QV+GN+ AIT GS G FELNV
Sbjct: 300 GPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNV 359
Query: 300 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDN 359
FKP++ + LL+S+RL+ DA+ SF +CV GI+AN RI +LL +SLMLVT+LNPKIGYD
Sbjct: 360 FKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDA 419
Query: 360 AAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 399
A+ VAK AHK+G TLK++AL+LGVL +EFD VVPE M+
Sbjct: 420 ASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHML 459
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Length = 456
Score = 367 bits (944), Expect = e-125
Identities = 248/400 (62%), Positives = 298/400 (74%), Gaps = 2/400 (0%)
Query: 1 MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
+ G L AI QAA EV G+ +D FPL +WQTGSGTQSNMN NEV+ANRA+E+LG
Sbjct: 57 EDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLG 116
Query: 60 HKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFK 118
RG + VHPND VN+SQSSND FPT MH+AA + +LIP LK L +L+ KS F
Sbjct: 117 GVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFA 176
Query: 119 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 178
DIVKIGRTH QDATPLTLGQE SG+ +++ + + LP + +LA GGTAVGTGLNT
Sbjct: 177 DIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTH 236
Query: 179 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLG 238
+ ++A +A T PFVTA NKFEALA DA V+ GAL +AASLMKIANDVR L
Sbjct: 237 PEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLA 296
Query: 239 SGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 298
SGPRCG+GE+ +PENEPGSSIMPGKVNPTQCEALTM+C QV+GN VAI +GG++G+FELN
Sbjct: 297 SGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELN 356
Query: 299 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYD 358
VF+PM+ L S+RLL D SF K+C GI+ NRERI++LL+ESLMLVT+LN IGYD
Sbjct: 357 VFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYD 416
Query: 359 NAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 398
AA +AKKAHKEG TLK AAL LG L+ EFD+ V PE+M
Sbjct: 417 KAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQM 456
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}
Length = 460
Score = 361 bits (926), Expect = e-122
Identities = 226/402 (56%), Positives = 279/402 (69%), Gaps = 1/402 (0%)
Query: 1 MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
+E G L I KAI+QAA+EV +GK +DHFPLVV+QTGSGTQ+NMN NEVIANRA+EILG
Sbjct: 58 LELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILG 117
Query: 60 HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKD 119
G K HPNDHVNR QSSNDTFPT M++A A+ + RL P ++ L + +K+ F
Sbjct: 118 KPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQ 177
Query: 120 IVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 179
IVK+GRTH DA P+TLGQE + Q+K + V +Y LA GGTAVGTGLN
Sbjct: 178 IVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHP 237
Query: 180 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGS 239
F +A +AEET LPF AEN+F ALAAHD V GA+ T+A +LMKI NDVR L S
Sbjct: 238 RFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLAS 297
Query: 240 GPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV 299
GP G+GE+ +P NEPGSSIMPGKVNPTQ EALTMV +V GN + GS G+F+LNV
Sbjct: 298 GPYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNV 357
Query: 300 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDN 359
+KP++A L S+ LL DA ASF+ + +GI+ N ERI + L ++ ML T+LN IGYD
Sbjct: 358 YKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKAIGYDK 417
Query: 360 AAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 401
AA + KKA KE TLK AAL+LG L EEFD +VVP ++ P
Sbjct: 418 AAEIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKP 459
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp.,
ym55-1 [TaxId: 1409]}
Length = 462
Score = 301 bits (770), Expect = 3e-99
Identities = 169/404 (41%), Positives = 251/404 (62%), Gaps = 3/404 (0%)
Query: 1 MEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
ME G LD +G+ I++AA EV EGK ND F + Q G+GT NMNANEVIANRA E++G
Sbjct: 57 MEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMG 116
Query: 60 HKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFK 118
++G + PN HVN SQS+ND FPT HIA + ++LI K + K+ EF
Sbjct: 117 EEKGNYSKISPNSHVNMSQSTNDAFPTATHIAV-LSLLNQLIETTKYMQQEFMKKADEFA 175
Query: 119 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK 178
++K+GRTH QDA P+ LGQEF Y + I+R+ +Y + G TAVGTGLN
Sbjct: 176 GVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNAD 235
Query: 179 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLG 238
+ + +A+ + P +A++ +A D + E S AL ++ KIAND+RL+
Sbjct: 236 PEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMA 295
Query: 239 SGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 298
SGPR GL E++LP +PGSSIMPGKVNP E + V QV GN + IT G FELN
Sbjct: 296 SGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELN 355
Query: 299 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYD 358
V +P++ L+ S+ ++ + SF +NC++GI+AN ER+ + + +S+ ++T++NP +GY+
Sbjct: 356 VMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYE 415
Query: 359 NAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPS 402
AA +A++A+ G ++++ +K GVL E+ + ++ P +MI P
Sbjct: 416 TAAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHPG 459
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli
[TaxId: 562]}
Length = 459
Score = 287 bits (735), Expect = 5e-94
Identities = 158/395 (40%), Positives = 232/395 (58%), Gaps = 4/395 (1%)
Query: 1 MEYG-LDPAIGKAIMQAAQEV-AEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEIL 58
E + ++ AI+ A EV GK D FP+ V+Q G+GT NMN NEV+AN E++
Sbjct: 63 KELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELM 122
Query: 59 GHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEF 117
GH++GE + ++PNDHVN+ QS+ND +PT IA +L+ + L K+VEF
Sbjct: 123 GHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLI-KLVDAINQLREGFERKAVEF 181
Query: 118 KDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNT 177
+DI+K+GRT QDA P+TLGQEF ++ +K + + + ++ G TA+GTGLNT
Sbjct: 182 QDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLNT 241
Query: 178 KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLL 237
K + +AE T P V AE+ EA + A+V GAL +A + KI ND+RLL
Sbjct: 242 PKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLL 301
Query: 238 GSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFEL 297
SGPR GL E+ LPE + GSSIMP KVNP E + VC +VIGN +T+ G +L
Sbjct: 302 SSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQL 361
Query: 298 NVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGY 357
NV +P+I + S+ +L +A + + C+ GI AN+E ++ S+ +VT LNP IG+
Sbjct: 362 NVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGH 421
Query: 358 DNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNL 392
N V K + G ++++ L+ G+L E D++
Sbjct: 422 HNGDIVGKICAETGKSVREVVLERGLLTEAELDDI 456
>gi|89101013|ref|ZP_01173856.1|(9-416:430) adenylosuccinate lyase
[Bacillus sp. NRRL B-14911] gi|89084274|gb|EAR63432.1|
adenylosuccinate lyase [Bacillus sp. NRRL B-14911] E=0
s/c=1.85 id=87% cov=100%
Length = 408
Score = 178 bits (451), Expect = 2e-52
Identities = 71/408 (17%), Positives = 136/408 (33%), Gaps = 47/408 (11%)
Query: 1 MEYGLDPA-IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
E G P + I + A E + + T+ ++ A
Sbjct: 27 AELGDIPKEDVQKIRENASFDIER---------INEIEQETRHDVVAFT----------- 66
Query: 60 HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKD 119
E + V+ +S D T + + L +L+ L +K+ E K
Sbjct: 67 RAVSETLGEERKWVHYGLTSTDVVDTALSYLIKQANSILL-QDLENFVEILKNKAKEHKY 125
Query: 120 IVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 179
V +GRTH A P T G + + + ++K ++R + + AVGT N
Sbjct: 126 TVMMGRTHGVHAEPTTFGLKLALWYEEMKRNLERFKQAAS-GVEFGKMSGAVGTYANINP 184
Query: 180 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGS 239
+ + + D A++ +A S+ K A ++R L
Sbjct: 185 FVESYVCE-------KLGLQPAPISTQTLQRDRHAHYMAAISLIATSIEKFAVEIRGLQK 237
Query: 240 GPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV 299
+ E + + GSS MP K NP E +T + + G+ + E ++
Sbjct: 238 SETREVEEF-FAKGQKGSSAMPHKRNPIGSENMTGLARVIRGHMLTAY-ENVPLWHERDI 295
Query: 300 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTS--------- 350
+L + + + N V+ + E + + + +L L+ S
Sbjct: 296 SHSSAERIILPDATIALNYMLNRFGNIVKNLTVFPENMKRNMDRTLGLIYSQRVLLALID 355
Query: 351 --LNPKIGYDNAAAVAKKAHKEGTTLKDAALK----LGVLNSEEFDNL 392
+ + YD A +A ++ K L++EE ++
Sbjct: 356 KGMAREEAYDVVQPRAMEAWEKQVAFKSLVEADETISSRLSAEEIEDC 403
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Length = 448
Score = 163 bits (412), Expect = 2e-46
Identities = 85/417 (20%), Positives = 140/417 (33%), Gaps = 35/417 (8%)
Query: 1 MEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 60
GL P A + + + T N V A
Sbjct: 38 ASAGLVPH------SAVAAIEAACQAERYDTGALANAIATAGNSAIPLVKALGKVI---- 87
Query: 61 KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDI 120
+ +V+ +S D T + + + + +L L ++L ++++ D
Sbjct: 88 --ATGVPEAERYVHLGATSQDAMDTGLVLQLRDALD-LIEADLGKLADTLSQQALKHADT 144
Query: 121 VKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKG 180
+GRT Q ATP+TLG + +G + R+ PR+ L GG + K
Sbjct: 145 PLVGRTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGGASGSLAALGSKA 204
Query: 181 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSG 240
+A A+AE+ L D VE + L VA SL K D+ LL
Sbjct: 205 MP--VAEALAEQLKLTLPEQPWHT----QRDRLVEFASVLGLVAGSLGKFGRDISLLMQT 258
Query: 241 PRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVF 300
+ E + GSS MP K NP L +V G + H
Sbjct: 259 EAGEVFEPS-APGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLFAAMPQEHERSL-G 316
Query: 301 KPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTS------LNPK 354
L + L + + G++ + R+ + L + LV + L +
Sbjct: 317 LWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLAQR 376
Query: 355 IGYDNAAAV----AKKAHKEGTTLKDAALK----LGVLNSEEFDNLVVPEKMIGPSD 403
+G D A + ++A E L+ L+ EE D L+ P +G +
Sbjct: 377 LGRDRAHHLLEQCCQRAVAEQRHLRAVLGDEPQVSAELSGEELDRLLDPAHYLGQAR 433
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
[TaxId: 2336]}
Length = 429
Score = 152 bits (384), Expect = 1e-42
Identities = 67/356 (18%), Positives = 116/356 (32%), Gaps = 26/356 (7%)
Query: 63 GEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVK 122
G I + + +S+D T +A L + + L + +K
Sbjct: 77 GSMIGEDSRFFHYGLTSSDVLDTANSLALVEAGKILLESLKEF-CDVLWEVANRYKHTPT 135
Query: 123 IGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFD 182
IGRTH A P + G + G+ +++K + R+ + + G +
Sbjct: 136 IGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISGAVGNYANVPPEVE- 194
Query: 183 VKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPR 242
+ S + E + D L VAA + +IA ++R L
Sbjct: 195 -------EKALSYLGLKPEPVSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEV 247
Query: 243 CGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKP 302
+ E + + GSS MP K NP CE LT + + ++ E ++
Sbjct: 248 LEVEE-PFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDP-SLENIALWHERDISHS 305
Query: 303 MIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTS-----------L 351
+ + N VR ++ N ER+ K + + LV S L
Sbjct: 306 SVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGL 365
Query: 352 NPKIGYDNAAAVAKKAHKEGTTLKDAALK----LGVLNSEEFDNLVVPEKMIGPSD 403
K YD A K + L+ ++ EE + L + D
Sbjct: 366 TRKEAYDIVQRNALKTWNSEKHFLEYLLEDEEVKKLVTKEELEELFDISYYLKHVD 421
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 145 bits (366), Expect = 5e-40
Identities = 76/413 (18%), Positives = 143/413 (34%), Gaps = 34/413 (8%)
Query: 5 LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE 64
+ + I +AA+ D T +G N+ V A +
Sbjct: 42 IPQSAATVIQRAAKTAI-----DKIDFDALATATGLAGNIAIPFVKQLTAIVKDADE--- 93
Query: 65 KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIG 124
+V+ +S D T + + + + ++ + + S++ ++ V +G
Sbjct: 94 ---DAARYVHWGATSQDILDTACIL-QCRDALAIVQNQVQQCYETALSQAQTYRHQVMMG 149
Query: 125 RTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVK 184
RT Q A P+TLG + + + + K +DR+ R+ GG +G
Sbjct: 150 RTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGGAVGSLASLQDQGS--- 206
Query: 185 IASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCG 244
V E + + D VE + L + ++ K+A D L+
Sbjct: 207 ---IVVEAYAKQLKLGQTACTWHGERDRIVEIASVLGIITGNVGKMARDWSLMMQTEIAE 263
Query: 245 LGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMI 304
+ E + GSS MP K NP ++ +V +I E ++
Sbjct: 264 VFEPT-AKGRGGSSTMPHKRNPVAAASVLAAANRVPALMSSIYQ-SMVQEHERSLGAWHA 321
Query: 305 ASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTS------LNPKIGYD 358
L + L + + ++G++ N E + + + + L+ + L P +G
Sbjct: 322 EWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGLIMAEAVMMALAPHMGRL 381
Query: 359 NAAAV----AKKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGPSD 403
NA V K A E LKD ++ N + D + PE +G
Sbjct: 382 NAHHVVEAACKTAVAEQKHLKDIISQVDEVKQYFNPSQLDEIFKPESYLGNIQ 434
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 459
Score = 136 bits (343), Expect = 2e-36
Identities = 68/407 (16%), Positives = 126/407 (30%), Gaps = 39/407 (9%)
Query: 5 LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE 64
L A I+ +VAE F L T ANE E
Sbjct: 50 LTKAEMDQILHGLDKVAEEWAQGTFKLNSNDEDIHT-----ANERRLK-----------E 93
Query: 65 KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIG 124
I ++ +S ND T + + +T S L L L ++ ++ +D++ G
Sbjct: 94 LIGATAGKLHTGRSRNDQVVTDLRLWM-RQTCSTLSGLLWELIRTMVDRAEAERDVLFPG 152
Query: 125 RTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVK 184
TH Q A P+ + + +R++ R+ L G A+ ++
Sbjct: 153 YTHLQRAQPIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIAGNPLGVDRELLR 212
Query: 185 IASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCG 244
T N +A + D E + L ++A D+ L +
Sbjct: 213 AELNFGAIT-------LNSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLILYCTKEFS- 264
Query: 245 LGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMI 304
+ GSS+MP K NP E + +V G + + N
Sbjct: 265 -FVQLSDAYSTGSSLMPRKKNPDSLELIRSKAGRVFGRCAGLLMTLKGLPSTYNKDLQED 323
Query: 305 ASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLM-------LVTSLNP-KIG 356
+ + + +Q ++E + + L ++ LV P +
Sbjct: 324 KEAVFEVSDTMSAVL-QVATGVISTLQIHQENMGQALSPDMLATDLAYYLVRKGMPFRQA 382
Query: 357 YDNAAAVAKKAHKEGTTLKDAAL----KLGVLNSEEFDNLVVPEKMI 399
++ + A +G L +L + L S + + +
Sbjct: 383 HEASGKAVFMAETKGVALNQLSLQELQTISPLFSGDVICVWDYRHSV 429
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Escherichia coli [TaxId: 562]}
Length = 455
Score = 136 bits (342), Expect = 2e-36
Identities = 67/409 (16%), Positives = 127/409 (31%), Gaps = 41/409 (10%)
Query: 5 LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE 64
L + +A + E + +A ++ + +++
Sbjct: 48 LTAEEQAQLEEALNVLLED----------VRARPQQILESDAEDIHSWVEGKLIDK---- 93
Query: 65 KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIG 124
+ ++ +S ND T + + + + + L ++L + +D V G
Sbjct: 94 -VGQLGKKLHTGRSRNDQVATDLKLWCKDTVSEL-LTANRQLQSALVETAQNNQDAVMPG 151
Query: 125 RTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLA-QGGTAVGTGLNTKKGFDV 183
TH Q A P+T Y + R+ L R+ G GT +
Sbjct: 152 YTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDREQ-- 209
Query: 184 KIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRC 243
+A T N ++++ D +E A L + A D+ +G
Sbjct: 210 -----LAGWLGFASATR-NSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAG 263
Query: 244 GLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPM 303
+ GSS+MP K NP E + C +V G + + N
Sbjct: 264 FVELS--DRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQE 321
Query: 304 IASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKI-------- 355
GL +L D + GIQ R R + + T L +
Sbjct: 322 DKEGLFDALDTWLDCLHMA-ALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFR 380
Query: 356 -GYDNAAAVAKKAHKEGTTLKDAAL----KLGVLNSEEFDNLVVPEKMI 399
+ +A ++G L+D L K + E+ ++ + +
Sbjct: 381 EAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPILSLQSCL 429
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Domestic duck (Anas platyrhynchos), delta-crystallin
[TaxId: 8839]}
Length = 449
Score = 127 bits (319), Expect = 3e-33
Identities = 65/406 (16%), Positives = 129/406 (31%), Gaps = 37/406 (9%)
Query: 5 LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE 64
L + I+ ++++E F + ++E I A E + E
Sbjct: 39 LTKTELEKILSGLEKISEEWSKGVFVV------------KQSDEDIHT-ANE---RRLKE 82
Query: 65 KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIG 124
I ++ +S ND T + + + S + +L L +L ++ D++ G
Sbjct: 83 LIGDIAGKLHTGRSRNDQVVTDLKLFM-KNSLSIISTHLLQLIKTLVERAAIEIDVILPG 141
Query: 125 RTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVK 184
H Q A P+ Q + + +R+ R+ L G G D +
Sbjct: 142 YDHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLG---SGALAGNPLDIDRE 198
Query: 185 IASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCG 244
+ + N +A++ D VE + L K+A D+ + +
Sbjct: 199 ----MLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGF 254
Query: 245 LGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMI 304
+ GSS+MP K NP E + +V G +I + N
Sbjct: 255 --LTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQED 312
Query: 305 ASGLLHSLR----LLGDASASFEKNCVRGIQANRERISKLLHESLM--LVTSLNP-KIGY 357
+ + +L A+ + + ++L L LV P + +
Sbjct: 313 KEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGVPFRQAH 372
Query: 358 DNAAAVAKKAHKEGTTLKDAAL----KLGVLNSEEFDNLVVPEKMI 399
+ A +G T+ +L + S + + +
Sbjct: 373 TASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSV 418
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 402
Score = 118 bits (297), Expect = 2e-30
Identities = 65/392 (16%), Positives = 132/392 (33%), Gaps = 48/392 (12%)
Query: 1 MEYGLDP-AIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 59
E G+ + + +A+ E V++ T ++ + ++ +
Sbjct: 39 EELGVAERGCCEKVNKASVSADE----------VYRLERETGHDILSLVLLLEQ------ 82
Query: 60 HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKD 119
+V+ +SND T + + + + L S + ++K
Sbjct: 83 -------KSGCRYVHYGATSNDIIDTAWALLIRRALAAVKEKARA-VGDQLASMARKYKT 134
Query: 120 IVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK 179
+ +GRTH Q A P+TLG +F+ Y ++ + L + A+ G AVGT + +
Sbjct: 135 LEMVGRTHGQWAEPITLGFKFANYYYELYIACRQ--LALAEEFIRAKIGGAVGTMASWGE 192
Query: 180 GFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGS 239
+ +A ++F + AL +AA ++A ++R L
Sbjct: 193 LGLEVRR----RVAERLGLPHHVITTQVAPRESFAVLASALALMAAVFERLAVEIRELSR 248
Query: 240 GPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV 299
+ E GSS MP K NPT E + + V E ++
Sbjct: 249 PEIG-----EVVEGGGGSSAMPHKANPTASERIVSLARYVRALTHVAF-ENVALWHERDL 302
Query: 300 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTS--------- 350
+ L D + ++ + + ERI++ L ++L + +
Sbjct: 303 TNSANERVWIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIK 362
Query: 351 --LNPKIGYDNAAAVAKKAHKEGTTLKDAALK 380
+ Y A V + + ++
Sbjct: 363 EGASRAEAYKKAKEVKALTFEYQKWPVERLIE 394
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 29.5 bits (64), Expect = 0.77
Identities = 14/101 (13%), Positives = 27/101 (26%), Gaps = 15/101 (14%)
Query: 3 YGLDPAIGKAIMQAAQ------------EVAEGKLNDHF---PLVVWQTGSGTQSNMNAN 47
G+ P I + + A + + V GTQ+N+ A
Sbjct: 10 VGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIAC 69
Query: 48 EVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMH 88
+ ++ + G H + + T P
Sbjct: 70 SLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDG 110
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD
{Pseudomonas putida [TaxId: 303]}
Length = 345
Score = 29.0 bits (63), Expect = 0.99
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 14/84 (16%)
Query: 3 YGLDPAIGKAIMQAA------------QEVAEGKLNDHF--PLVVWQTGSGTQSNMNANE 48
G P + +A+++ + + K + F + V+ +GT +N
Sbjct: 13 AGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLS 72
Query: 49 VIANRAAEILGHKRGEKIVHPNDH 72
+ I H
Sbjct: 73 AMTPPWGNIYCHPASHINNDECGA 96
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 28.1 bits (61), Expect = 2.2
Identities = 10/69 (14%), Positives = 22/69 (31%)
Query: 3 YGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKR 62
+ P G A+ + +G + VV T G + + + +N ++
Sbjct: 390 MFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFS 449
Query: 63 GEKIVHPND 71
+ D
Sbjct: 450 NPPVDVKAD 458
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase,
N-terminal domain {North american leech (Macrobdella
decora) [TaxId: 6405]}
Length = 196
Score = 26.4 bits (57), Expect = 5.9
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 282 NHVAITVGGSNGHFELNVFKPMIASG 307
N VA+ +N L ++A+
Sbjct: 111 NTVALKADAANKQCRLFANGELLATL 136
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.373
Gapped
Lambda K H
0.267 0.0458 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,373,978
Number of extensions: 59738
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 18
Length of query: 403
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 316
Effective length of database: 1,213,086
Effective search space: 383335176
Effective search space used: 383335176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.2 bits)