Query 015620
Match_columns 403
No_of_seqs 329 out of 4113
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 08:01:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4E-36 8.7E-41 317.1 21.9 309 6-317 259-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.5E-32 9.8E-37 286.3 23.3 309 5-317 234-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.1E-31 2.5E-36 247.0 -0.4 283 5-290 100-405 (873)
4 KOG4194 Membrane glycoprotein 99.9 1.8E-29 3.9E-34 232.6 0.3 307 8-317 126-456 (873)
5 KOG0444 Cytoskeletal regulator 99.9 8.9E-27 1.9E-31 216.7 -3.4 286 5-319 76-381 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 9.3E-27 2E-31 216.5 -7.1 246 25-296 52-311 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 8.1E-25 1.7E-29 193.8 -8.3 140 8-154 138-292 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 1.2E-24 2.6E-29 192.7 -9.0 262 9-312 47-309 (565)
9 KOG4237 Extracellular matrix p 99.8 2.8E-23 6E-28 183.8 -3.1 267 8-290 68-359 (498)
10 PRK15387 E3 ubiquitin-protein 99.8 3.2E-20 6.9E-25 184.7 16.2 238 9-296 203-464 (788)
11 PLN03210 Resistant to P. syrin 99.8 6.4E-19 1.4E-23 187.5 21.9 297 5-313 556-906 (1153)
12 PRK15370 E3 ubiquitin-protein 99.8 3.9E-20 8.5E-25 185.0 11.0 237 7-290 178-428 (754)
13 PRK15370 E3 ubiquitin-protein 99.8 9.5E-20 2.1E-24 182.3 13.0 219 28-296 178-406 (754)
14 KOG0618 Serine/threonine phosp 99.8 1.7E-21 3.8E-26 189.0 -1.6 290 12-312 183-488 (1081)
15 PLN03210 Resistant to P. syrin 99.8 4.8E-18 1E-22 180.8 22.6 267 8-288 590-904 (1153)
16 KOG4237 Extracellular matrix p 99.8 4.5E-22 9.7E-27 176.2 -9.0 273 40-315 68-361 (498)
17 PRK15387 E3 ubiquitin-protein 99.8 2E-18 4.3E-23 172.0 12.7 184 40-274 283-466 (788)
18 KOG0617 Ras suppressor protein 99.8 1.4E-20 3.1E-25 148.6 -4.3 166 59-276 29-195 (264)
19 KOG0618 Serine/threonine phosp 99.7 4E-20 8.6E-25 179.7 -3.5 253 6-288 198-487 (1081)
20 cd00116 LRR_RI Leucine-rich re 99.7 7.1E-19 1.5E-23 162.9 1.0 87 204-290 192-291 (319)
21 cd00116 LRR_RI Leucine-rich re 99.7 1E-18 2.2E-23 161.8 -0.4 235 40-289 52-319 (319)
22 KOG0617 Ras suppressor protein 99.7 2.1E-19 4.5E-24 142.0 -5.4 161 40-252 34-195 (264)
23 PLN03150 hypothetical protein; 99.6 8.4E-16 1.8E-20 153.2 10.9 118 206-323 419-538 (623)
24 KOG0532 Leucine-rich repeat (L 99.4 8.9E-15 1.9E-19 135.9 -4.2 191 42-288 78-271 (722)
25 COG4886 Leucine-rich repeat (L 99.4 6.8E-13 1.5E-17 126.5 6.9 199 43-296 97-296 (394)
26 KOG0532 Leucine-rich repeat (L 99.3 3.4E-14 7.3E-19 132.1 -5.5 195 6-264 74-271 (722)
27 COG4886 Leucine-rich repeat (L 99.3 4.8E-12 1E-16 120.7 7.0 182 39-274 116-298 (394)
28 PLN03150 hypothetical protein; 99.2 1.5E-11 3.4E-16 122.9 8.3 108 41-150 420-528 (623)
29 KOG1259 Nischarin, modulator o 99.2 2.9E-12 6.2E-17 110.7 1.4 131 109-291 282-413 (490)
30 KOG3207 Beta-tubulin folding c 99.2 3.7E-12 8E-17 115.3 1.3 209 61-290 119-339 (505)
31 KOG1909 Ran GTPase-activating 99.2 1.5E-12 3.2E-17 114.7 -2.0 190 61-290 90-311 (382)
32 KOG3207 Beta-tubulin folding c 99.1 1.1E-11 2.4E-16 112.1 1.3 133 5-150 119-259 (505)
33 PF14580 LRR_9: Leucine-rich r 99.1 4.3E-11 9.3E-16 98.7 4.6 106 40-151 20-127 (175)
34 PF14580 LRR_9: Leucine-rich r 99.1 2.4E-11 5.3E-16 100.2 2.5 127 6-146 18-149 (175)
35 KOG1259 Nischarin, modulator o 99.1 1.5E-11 3.2E-16 106.4 -0.5 81 64-150 285-365 (490)
36 PF13855 LRR_8: Leucine rich r 99.0 3.1E-10 6.7E-15 77.1 3.2 58 41-98 3-60 (61)
37 PF13855 LRR_8: Leucine rich r 99.0 3.8E-10 8.2E-15 76.6 3.4 61 63-123 1-61 (61)
38 KOG0531 Protein phosphatase 1, 98.9 4.8E-10 1E-14 107.3 1.7 103 42-151 98-200 (414)
39 KOG4658 Apoptotic ATPase [Sign 98.9 1.4E-09 3E-14 111.6 5.1 128 7-148 523-653 (889)
40 KOG0531 Protein phosphatase 1, 98.9 1.6E-10 3.5E-15 110.6 -1.8 215 39-290 72-290 (414)
41 KOG1909 Ran GTPase-activating 98.8 3.2E-10 7E-15 100.1 -1.4 149 4-156 89-260 (382)
42 KOG4658 Apoptotic ATPase [Sign 98.5 1.4E-07 3.1E-12 97.0 6.6 109 5-122 543-653 (889)
43 KOG1859 Leucine-rich repeat pr 98.5 2.8E-09 6.1E-14 102.6 -5.9 125 39-172 164-289 (1096)
44 KOG2120 SCF ubiquitin ligase, 98.5 1.5E-09 3.3E-14 93.9 -7.0 86 65-150 187-273 (419)
45 KOG1859 Leucine-rich repeat pr 98.4 5.4E-09 1.2E-13 100.7 -5.6 106 204-314 186-293 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.3 4.2E-09 9.1E-14 91.3 -8.4 58 88-147 186-244 (419)
47 KOG2982 Uncharacterized conser 98.3 1.3E-07 2.8E-12 82.2 -0.3 222 42-284 48-286 (418)
48 KOG4579 Leucine-rich repeat (L 98.2 6.6E-08 1.4E-12 74.4 -3.3 98 204-304 52-149 (177)
49 COG5238 RNA1 Ran GTPase-activa 98.2 4.6E-07 1E-11 77.9 1.2 89 205-293 185-288 (388)
50 PF12799 LRR_4: Leucine Rich r 98.2 1.3E-06 2.9E-11 54.3 3.0 37 64-101 2-38 (44)
51 KOG4579 Leucine-rich repeat (L 98.1 4.9E-08 1.1E-12 75.1 -5.3 79 42-123 56-135 (177)
52 KOG2982 Uncharacterized conser 98.1 1.6E-06 3.4E-11 75.6 2.8 220 58-295 40-267 (418)
53 PF12799 LRR_4: Leucine Rich r 98.1 2.9E-06 6.4E-11 52.7 3.2 36 230-266 2-37 (44)
54 PRK15386 type III secretion pr 98.0 5.9E-05 1.3E-09 70.3 10.5 32 205-239 156-187 (426)
55 COG5238 RNA1 Ran GTPase-activa 98.0 2.4E-06 5.2E-11 73.5 0.9 88 203-290 212-316 (388)
56 KOG3665 ZYG-1-like serine/thre 97.9 3.5E-06 7.6E-11 84.7 1.9 119 39-159 148-272 (699)
57 KOG1644 U2-associated snRNP A' 97.8 2.9E-05 6.2E-10 64.2 5.3 107 40-148 43-151 (233)
58 KOG3665 ZYG-1-like serine/thre 97.7 1.5E-05 3.3E-10 80.2 2.6 119 7-127 122-266 (699)
59 KOG1644 U2-associated snRNP A' 97.7 7.4E-05 1.6E-09 61.8 5.4 83 39-122 64-151 (233)
60 PRK15386 type III secretion pr 97.7 0.00025 5.4E-09 66.2 9.5 139 59-264 48-188 (426)
61 KOG2739 Leucine-rich acidic nu 97.2 0.00019 4.2E-09 61.8 2.7 94 54-151 34-130 (260)
62 KOG2123 Uncharacterized conser 97.1 1.5E-05 3.4E-10 68.9 -5.5 89 62-155 18-106 (388)
63 KOG2739 Leucine-rich acidic nu 97.0 0.00041 9E-09 59.8 2.1 101 42-146 46-152 (260)
64 PF13306 LRR_5: Leucine rich r 96.8 0.0058 1.3E-07 48.0 7.6 101 39-146 12-112 (129)
65 PF13306 LRR_5: Leucine rich r 96.6 0.0051 1.1E-07 48.3 5.8 103 5-120 10-112 (129)
66 KOG4341 F-box protein containi 96.6 4.7E-05 1E-09 69.6 -6.9 84 204-287 345-436 (483)
67 KOG2123 Uncharacterized conser 96.1 0.00024 5.1E-09 61.8 -4.8 74 85-164 17-90 (388)
68 PF00560 LRR_1: Leucine Rich R 96.0 0.0026 5.6E-08 32.9 0.5 17 42-59 3-19 (22)
69 PF00560 LRR_1: Leucine Rich R 95.9 0.003 6.5E-08 32.6 0.6 19 65-84 2-20 (22)
70 KOG0473 Leucine-rich repeat pr 93.7 0.0012 2.6E-08 56.1 -7.0 88 58-150 37-124 (326)
71 KOG4308 LRR-containing protein 93.1 0.00036 7.9E-09 67.4 -12.7 110 41-150 89-217 (478)
72 KOG4308 LRR-containing protein 92.8 0.00028 6.2E-09 68.1 -13.8 186 9-242 89-303 (478)
73 KOG1947 Leucine rich repeat pr 92.8 0.011 2.3E-07 57.9 -3.2 111 39-150 188-308 (482)
74 smart00369 LRR_TYP Leucine-ric 92.0 0.14 3E-06 27.4 2.0 13 254-266 3-15 (26)
75 smart00370 LRR Leucine-rich re 92.0 0.14 3E-06 27.4 2.0 13 254-266 3-15 (26)
76 smart00370 LRR Leucine-rich re 91.8 0.16 3.4E-06 27.2 2.1 15 87-101 2-16 (26)
77 smart00369 LRR_TYP Leucine-ric 91.8 0.16 3.4E-06 27.2 2.1 15 87-101 2-16 (26)
78 KOG0473 Leucine-rich repeat pr 91.6 0.0032 7E-08 53.5 -7.2 83 39-124 42-124 (326)
79 KOG3864 Uncharacterized conser 88.7 0.035 7.5E-07 46.4 -3.3 33 42-74 104-136 (221)
80 KOG4341 F-box protein containi 88.0 0.11 2.4E-06 48.2 -0.9 128 39-167 320-457 (483)
81 KOG3864 Uncharacterized conser 86.6 0.065 1.4E-06 44.8 -2.9 81 206-286 102-185 (221)
82 PF13516 LRR_6: Leucine Rich r 85.4 0.14 3.1E-06 26.8 -1.0 14 87-100 2-15 (24)
83 smart00365 LRR_SD22 Leucine-ri 83.4 0.94 2E-05 24.3 1.6 15 87-101 2-16 (26)
84 KOG4242 Predicted myosin-I-bin 80.6 6.1 0.00013 37.8 6.9 93 7-99 165-280 (553)
85 KOG4242 Predicted myosin-I-bin 77.8 13 0.00027 35.7 8.0 66 39-106 165-233 (553)
86 smart00364 LRR_BAC Leucine-ric 77.4 1.8 3.8E-05 23.2 1.4 18 277-295 2-19 (26)
87 PF08693 SKG6: Transmembrane a 73.2 3.3 7.2E-05 24.7 2.0 7 350-356 12-18 (40)
88 smart00368 LRR_RI Leucine rich 72.7 3.3 7.2E-05 22.5 1.9 12 41-52 4-15 (28)
89 KOG1947 Leucine rich repeat pr 70.9 1.9 4E-05 42.1 1.0 88 202-289 211-307 (482)
90 KOG3763 mRNA export factor TAP 66.3 1.9 4.1E-05 41.9 -0.1 65 61-126 216-285 (585)
91 PF03672 UPF0154: Uncharacteri 62.5 6.3 0.00014 26.4 1.9 16 355-370 3-18 (64)
92 PF01034 Syndecan: Syndecan do 53.4 4.4 9.6E-05 27.0 0.0 10 354-363 17-26 (64)
93 KOG3763 mRNA export factor TAP 46.2 9.3 0.0002 37.3 1.0 62 204-267 217-284 (585)
94 PF13908 Shisa: Wnt and FGF in 45.8 25 0.00053 29.3 3.3 10 313-322 29-38 (179)
95 PRK01844 hypothetical protein; 45.2 19 0.0004 24.7 2.0 23 357-383 12-34 (72)
96 PF11980 DUF3481: Domain of un 45.0 6.8 0.00015 27.5 -0.1 24 348-371 16-39 (87)
97 TIGR00864 PCC polycystin catio 42.3 16 0.00035 42.9 2.1 33 235-267 1-33 (2740)
98 PF15176 LRR19-TM: Leucine-ric 41.8 9.4 0.0002 28.0 0.2 20 370-389 36-55 (102)
99 PF02439 Adeno_E3_CR2: Adenovi 37.9 18 0.0004 21.3 0.9 11 354-364 7-17 (38)
100 PF14991 MLANA: Protein melan- 35.3 12 0.00027 28.0 -0.0 7 378-384 53-59 (118)
101 PTZ00382 Variant-specific surf 34.0 24 0.00053 25.9 1.3 6 353-358 69-74 (96)
102 PF01102 Glycophorin_A: Glycop 33.9 5.7 0.00012 30.6 -2.0 12 353-364 67-78 (122)
103 PF15102 TMEM154: TMEM154 prot 33.3 19 0.00041 28.6 0.7 7 348-354 58-64 (146)
104 PF06295 DUF1043: Protein of u 33.3 15 0.00032 28.8 0.1 15 357-371 4-18 (128)
105 PF04478 Mid2: Mid2 like cell 32.9 17 0.00038 29.0 0.4 19 350-368 49-67 (154)
106 PRK00523 hypothetical protein; 32.9 14 0.0003 25.3 -0.1 23 357-383 13-35 (72)
107 smart00367 LRR_CC Leucine-rich 32.8 34 0.00073 17.9 1.5 13 276-288 1-13 (26)
108 PF01299 Lamp: Lysosome-associ 32.3 5.7 0.00012 36.4 -2.8 9 348-356 272-280 (306)
109 PF08114 PMP1_2: ATPase proteo 31.5 66 0.0014 19.3 2.5 6 375-380 31-36 (43)
110 TIGR00864 PCC polycystin catio 29.8 33 0.00072 40.6 2.1 33 69-101 1-33 (2740)
111 PF01102 Glycophorin_A: Glycop 29.8 7.7 0.00017 29.9 -1.9 21 348-368 66-86 (122)
112 PF15050 SCIMP: SCIMP protein 29.4 15 0.00033 27.8 -0.4 15 357-371 15-29 (133)
113 COG3105 Uncharacterized protei 28.8 21 0.00047 27.5 0.3 17 355-371 11-27 (138)
114 TIGR00985 3a0801s04tom mitocho 27.8 25 0.00053 28.2 0.5 33 354-386 10-45 (148)
115 smart00459 Sorb Sorbin homolog 26.7 44 0.00096 21.0 1.4 14 375-388 29-42 (50)
116 PF02064 MAS20: MAS20 protein 26.6 22 0.00047 27.5 0.0 28 357-384 3-33 (121)
117 PF10762 DUF2583: Protein of u 26.0 61 0.0013 22.9 2.1 16 373-388 70-85 (89)
118 PF14986 DUF4514: Domain of un 24.8 46 0.001 21.1 1.2 24 345-368 17-40 (61)
119 PF12191 stn_TNFRSF12A: Tumour 24.8 24 0.00053 27.1 0.0 13 359-371 90-102 (129)
120 COG3763 Uncharacterized protei 24.5 26 0.00057 23.8 0.1 18 353-370 8-25 (71)
121 PRK11677 hypothetical protein; 24.5 11 0.00024 29.6 -2.0 16 356-371 7-22 (134)
122 PF14575 EphA2_TM: Ephrin type 23.3 24 0.00051 24.6 -0.3 8 356-363 7-14 (75)
123 PF02208 Sorb: Sorbin homologo 22.9 60 0.0013 19.9 1.4 16 372-387 23-38 (47)
124 PF11120 DUF2636: Protein of u 22.6 40 0.00087 22.4 0.7 12 358-369 13-24 (62)
125 PF08374 Protocadherin: Protoc 22.3 51 0.0011 28.1 1.4 12 351-362 39-50 (221)
126 PF12732 YtxH: YtxH-like prote 21.8 53 0.0011 22.7 1.2 29 353-381 3-31 (74)
127 PF06305 DUF1049: Protein of u 20.5 47 0.001 22.3 0.8 16 355-370 24-39 (68)
128 PF05393 Hum_adeno_E3A: Human 20.3 28 0.00062 24.7 -0.4 18 354-371 38-55 (94)
129 PF04971 Lysis_S: Lysis protei 20.0 59 0.0013 22.1 1.1 11 353-363 36-46 (68)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4e-36 Score=317.06 Aligned_cols=309 Identities=28% Similarity=0.416 Sum_probs=200.5
Q ss_pred CCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEE
Q 015620 6 IATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69 (403)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 69 (403)
+++|+.|++++|.+.+..| ..+++|+.|++++| ++|+.|++++|.+++..|..+..+++|+.|+
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 338 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEE
Confidence 4556666666666655544 34455556666555 3555555555555555555555555555555
Q ss_pred ccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccC------------------------CCCCcEEEcccccccC
Q 015620 70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI------------------------LPELQVLILRSNRFWG 125 (403)
Q Consensus 70 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~------------------------l~~L~~L~l~~n~l~~ 125 (403)
+++|++++.+|..++.+++|+.|++++|.+++.+|.++.. +++|+.|++++|++++
T Consensus 339 L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~ 418 (968)
T PLN00113 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418 (968)
T ss_pred CcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence 5555555555555555555555555555555444544444 4444555555554444
Q ss_pred cCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCccccc-ccCCCCCCCcceEEEEEEe---ccchhhh
Q 015620 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVD-YMTPLNSSNYYESIILTIK---GIDIKME 201 (403)
Q Consensus 126 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~ 201 (403)
.+|..+ ..+++|+.|++++|.+++..+.. +..++.|+.+........ .++.......+..+..+.+ +..+..+
T Consensus 419 ~~p~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~ 495 (968)
T PLN00113 419 ELPSEF--TKLPLVYFLDISNNNLQGRINSR-KWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKL 495 (968)
T ss_pred ECChhH--hcCCCCCEEECcCCcccCccChh-hccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhh
Confidence 444433 44555555555555555443322 222333333322111110 0000000111222222222 2223345
Q ss_pred hhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCE
Q 015620 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV 281 (403)
Q Consensus 202 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 281 (403)
..+++|+.|++++|.+++.+|..+..+++|+.|+|++|.+++.+|..+..+++|+.|||++|++++.+|..+..+++|+.
T Consensus 496 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 575 (968)
T PLN00113 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575 (968)
T ss_pred hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCcCccCCCCCCCCCCCCCCcCCCCCCCCCCC
Q 015620 282 LNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFP 317 (403)
Q Consensus 282 L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~~lc~~~ 317 (403)
+++++|+++|.+|...++.++....+.||+.+||.+
T Consensus 576 l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 576 VNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred EeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999999999888899999999999999854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.5e-32 Score=286.34 Aligned_cols=309 Identities=28% Similarity=0.353 Sum_probs=243.7
Q ss_pred CCCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEE
Q 015620 5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 68 (403)
++++|++|++++|.+++..| ..+++|+.|++++| ++|++|++++|.+.+.+|..+.++++|++|
T Consensus 234 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 313 (968)
T PLN00113 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313 (968)
T ss_pred cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEE
Confidence 57899999999999998877 67889999999998 689999999999999999999999999999
Q ss_pred EccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCc
Q 015620 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (403)
Q Consensus 69 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 148 (403)
++++|.+++.+|..+.++++|+.|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..+ ..+++|+.|++++|.
T Consensus 314 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~--~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL--CSSGNLFKLILFSNS 391 (968)
T ss_pred ECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH--hCcCCCCEEECcCCE
Confidence 999999999999999999999999999999999999999999999999999999988887755 566666777777666
Q ss_pred cccccchhhhhhhhhhcccCCCccccc-----ccCCCC---------------------CCCcceEEEEEEeccc---hh
Q 015620 149 FTGVLLTGYLDNFKAMMHGNNISVEVD-----YMTPLN---------------------SSNYYESIILTIKGID---IK 199 (403)
Q Consensus 149 l~~~~~~~~~~~l~~L~~~~~~~~~~~-----~~~~~~---------------------~~~~~~~~~~~~~~~~---~~ 199 (403)
+.+..|.. +..++.|+.+........ .+.... ....++.+....+.+. +.
T Consensus 392 l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~ 470 (968)
T PLN00113 392 LEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470 (968)
T ss_pred ecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc
Confidence 66655543 333333333322111110 000000 0011122222111111 11
Q ss_pred hhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCC
Q 015620 200 MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYL 279 (403)
Q Consensus 200 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 279 (403)
.. ..++|+.|++++|.+++.+|..+..+++|+.|+|++|++.+.+|..+.++++|++|++++|++++.+|..+..+++|
T Consensus 471 ~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 549 (968)
T PLN00113 471 SF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549 (968)
T ss_pred cc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccC
Confidence 11 24679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEeCcCCcCccCCCCCC-CCCCCCCCcCCCCCCCCCCC
Q 015620 280 SVLNLSYNQFEGPIPRGS-QFNTFPNDSYVGNSGLCGFP 317 (403)
Q Consensus 280 ~~L~L~~N~l~~~ip~~~-~~~~~~~~~~~gn~~lc~~~ 317 (403)
+.|++++|+++|.+|... .+..+..+.+.+|+..+..|
T Consensus 550 ~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 999999999999999863 34556667777777665444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-31 Score=247.04 Aligned_cols=283 Identities=25% Similarity=0.284 Sum_probs=195.8
Q ss_pred CCCCccEEECCCCCCCCcCC--CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEE
Q 015620 5 GIATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 69 (403)
++++|+.+++.+|.++.++. ....++++|+|.+| +.|+.||||.|.|+......|..-.++++|+
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEe
Confidence 67888888888888887765 56667888998888 7889999999999855556777778899999
Q ss_pred ccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCcc
Q 015620 70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF 149 (403)
Q Consensus 70 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 149 (403)
|++|+|+..-...|.++.+|.+|.|+.|+++...+..|..+++|+.|+|..|++ .+.+..+|.++++|+.|.+..|++
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i--rive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI--RIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred eccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce--eeehhhhhcCchhhhhhhhhhcCc
Confidence 999999977778899999999999999999987777888899999999999988 445555668888888888888887
Q ss_pred ccccchhhhhhhhhhcccCCCccccc-----ccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcc
Q 015620 150 TGVLLTGYLDNFKAMMHGNNISVEVD-----YMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEV 224 (403)
Q Consensus 150 ~~~~~~~~~~~l~~L~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 224 (403)
..... +.+-.+.++..+++...... .+.++....-+......+..+........++|+.|+|+.|.++...+..
T Consensus 258 ~kL~D-G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~s 336 (873)
T KOG4194|consen 258 SKLDD-GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGS 336 (873)
T ss_pred ccccC-cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhH
Confidence 74433 33455566655555433322 2222222222222233344444455555777888888888888767777
Q ss_pred cCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCC---ccccCCCCCCEEeCcCCcCc
Q 015620 225 VGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIP---TQLTSLKYLSVLNLSYNQFE 290 (403)
Q Consensus 225 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~L~~N~l~ 290 (403)
|..+..|++|+|++|.++..-...|..+.+|+.|||++|.++..+. ..|.++++|+.|++.+|++.
T Consensus 337 f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 337 FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence 7777777777777776664444455555666666666655544332 23444555555555555554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=1.8e-29 Score=232.63 Aligned_cols=307 Identities=20% Similarity=0.196 Sum_probs=186.4
Q ss_pred CccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEcc
Q 015620 8 TLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71 (403)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 71 (403)
+|+.|+|.+|.|+.+.. ..++.|+.||||.| .++++|+|++|.|+..--+.|.++.+|..|.|+
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 45566666666555543 34455555666655 355666666666655445555555566666666
Q ss_pred CCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCcccc
Q 015620 72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151 (403)
Q Consensus 72 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 151 (403)
.|+++...+..|.++++|+.|+|..|+|.-..--.|.++++|+.|.+..|++.......+ ..+.++++|+|..|+++.
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F--y~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF--YGLEKMEHLNLETNRLQA 283 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcce--eeecccceeecccchhhh
Confidence 666664444455556666666666555543323344555555555555555533333322 445555555555555543
Q ss_pred ccchhhhhhhhhhcccCCCcccccccC--CCCC---CCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccC
Q 015620 152 VLLTGYLDNFKAMMHGNNISVEVDYMT--PLNS---SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG 226 (403)
Q Consensus 152 ~~~~~~~~~l~~L~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 226 (403)
+. .+++-+++.|..+++....+..+. .+.. ...+......+..++.+.+..+..|++|.|++|.++..-...|.
T Consensus 284 vn-~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 284 VN-EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred hh-cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence 32 222334444444443222222111 1111 11122222344555666677788999999999999977777888
Q ss_pred CCCCCCEEEecCCCCCCCcC---ccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCC
Q 015620 227 KLNLLKGLNISHNNLTGDIP---SSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFP 303 (403)
Q Consensus 227 ~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~ 303 (403)
.+++|++|||++|.+++.+. ..|.++++|+.|++.+|++....-.+|.++..|++|||.+|.|...-|..+.-..+.
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk 442 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELK 442 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhh
Confidence 99999999999999986554 357789999999999999996667899999999999999999975555543333455
Q ss_pred CCcCCCCCCCCCCC
Q 015620 304 NDSYVGNSGLCGFP 317 (403)
Q Consensus 304 ~~~~~gn~~lc~~~ 317 (403)
.+.+.....+|++.
T Consensus 443 ~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 443 ELVMNSSSFLCDCQ 456 (873)
T ss_pred hhhhcccceEEecc
Confidence 55566666777543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=8.9e-27 Score=216.68 Aligned_cols=286 Identities=26% Similarity=0.337 Sum_probs=221.6
Q ss_pred CCCCccEEECCCCCCC--CcCC--CCCCCCCeEeCCCC------------CCCCEEECcCCcCcccCCc-cccCCCCcCE
Q 015620 5 GIATLYYLDLSNNFLT--NIEY--FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPR-KFVKSCNLTS 67 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~--~~~~--~~~~~L~~L~l~~n------------~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~ 67 (403)
.+|.|+.+++..|+++ |+++ ..+..|..||||+| +++.+|+||+|+|. .+|. .|-+++.|-+
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLF 154 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence 5778888888888775 4555 67788889999998 78888999999998 5554 4568999999
Q ss_pred EEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccccccc-CcCCCCCCccCCCCccEEEccC
Q 015620 68 LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW-GPIGENTTIVPFPSLRIIDLSH 146 (403)
Q Consensus 68 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~l~~L~~L~l~~ 146 (403)
|+|++|++. .+|+.+..+..|++|+|++|.+...--..+..|++|++|.+++.+-+ ..+|..+ -.+.+|+.+|+|.
T Consensus 155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl--d~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL--DDLHNLRDVDLSE 231 (1255)
T ss_pred hccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch--hhhhhhhhccccc
Confidence 999999998 78888899999999999999876432233445677888888876543 3466655 7788999999999
Q ss_pred CccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccC
Q 015620 147 NEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG 226 (403)
Q Consensus 147 n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 226 (403)
|++..+ | .++-+++.|..+++.+..+..+. .. .....+|++|++|.|+++ .+|+.+.
T Consensus 232 N~Lp~v-P-ecly~l~~LrrLNLS~N~iteL~-------------------~~-~~~W~~lEtLNlSrNQLt-~LP~avc 288 (1255)
T KOG0444|consen 232 NNLPIV-P-ECLYKLRNLRRLNLSGNKITELN-------------------MT-EGEWENLETLNLSRNQLT-VLPDAVC 288 (1255)
T ss_pred cCCCcc-h-HHHhhhhhhheeccCcCceeeee-------------------cc-HHHHhhhhhhccccchhc-cchHHHh
Confidence 988743 3 33556666666665333222111 00 112467889999999999 8999999
Q ss_pred CCCCCCEEEecCCCCC-CCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCC-CCCCC
Q 015620 227 KLNLLKGLNISHNNLT-GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQF-NTFPN 304 (403)
Q Consensus 227 ~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~-~~~~~ 304 (403)
+++.|+.|.+.+|+++ ..+|..++.+.+|+++..++|.+. .+|..++.|..|+.|.|++|++- ++|+...+ ..+..
T Consensus 289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~v 366 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKV 366 (1255)
T ss_pred hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcce
Confidence 9999999999999876 368899999999999999999987 89999999999999999999998 78887654 45677
Q ss_pred CcCCCCCCCCCCCCC
Q 015620 305 DSYVGNSGLCGFPLL 319 (403)
Q Consensus 305 ~~~~gn~~lc~~~~~ 319 (403)
+++..||.+.-+|..
T Consensus 367 LDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 367 LDLRENPNLVMPPKP 381 (1255)
T ss_pred eeccCCcCccCCCCc
Confidence 788888888766654
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=9.3e-27 Score=216.54 Aligned_cols=246 Identities=25% Similarity=0.324 Sum_probs=162.7
Q ss_pred CCCCCCCeEeCCCC------------CCCCEEECcCCcCcc-cCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCE
Q 015620 25 FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNG-KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEV 91 (403)
Q Consensus 25 ~~~~~L~~L~l~~n------------~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 91 (403)
+.+++|++|.+++| +.|+.+++.+|++.. -+|..+..+..|+.|+|++|++. +.|..+..-+++-+
T Consensus 52 ~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 52 SRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIV 130 (1255)
T ss_pred HHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEE
Confidence 45566667776666 677888888887763 46777778888888888888888 78888888888888
Q ss_pred EEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCc
Q 015620 92 LNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNIS 171 (403)
Q Consensus 92 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~ 171 (403)
|+||+|+|..+....|.+++.|-+|||++|++. .+|..+ ..+..|++|+|++|.+.-..... +.++++|..+...+
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~--RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQI--RRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSN 206 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHH--HHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhhccc
Confidence 888888887744455667888888888888874 444444 67778888888888765321111 33334443333321
Q ss_pred ccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccC
Q 015620 172 VEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRN 251 (403)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 251 (403)
.... ..+++.. ...+.+|..+|+|.|++. .+|+.+-++++|..|+|++|.|+ .+.-..+.
T Consensus 207 TqRT-----------------l~N~Pts-ld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~ 266 (1255)
T KOG0444|consen 207 TQRT-----------------LDNIPTS-LDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGE 266 (1255)
T ss_pred ccch-----------------hhcCCCc-hhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHH
Confidence 1100 0111111 122566777777777777 67777777777777777777776 44445566
Q ss_pred CCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCc-cCCCCC
Q 015620 252 LTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE-GPIPRG 296 (403)
Q Consensus 252 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~ip~~ 296 (403)
..+|++|++|+|+++ ..|++++.++.|+.|.+.+|+++ .-||++
T Consensus 267 W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 267 WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccc
Confidence 677777777777777 66777777777777777777664 234554
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=8.1e-25 Score=193.84 Aligned_cols=140 Identities=29% Similarity=0.392 Sum_probs=98.8
Q ss_pred CccEEECCCCCCCCcCC--CCCCCCCeEeCCCC------------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCC
Q 015620 8 TLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN 73 (403)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 73 (403)
.++.++..+|+++..++ ..+..+..+++.+| +.|+.||..+|-++ .+|..++.+.+|+.|++..|
T Consensus 138 ~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 138 DLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhc
Confidence 34455555555555544 34444555555555 67788888888876 78888888888888888888
Q ss_pred cCcCCCCccccCCCCCCEEEccCCcCCcCCChhcc-CCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccc
Q 015620 74 RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE-ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152 (403)
Q Consensus 74 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 152 (403)
++. .+| .|.+|+.|.+|+++.|+|.- +|+... .++++.+||+.+|++.+ .|..+ +-+.+|.+||+++|.+++.
T Consensus 217 ki~-~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNklke-~Pde~--clLrsL~rLDlSNN~is~L 290 (565)
T KOG0472|consen 217 KIR-FLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKLKE-VPDEI--CLLRSLERLDLSNNDISSL 290 (565)
T ss_pred ccc-cCC-CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeecccccccc-CchHH--HHhhhhhhhcccCCccccC
Confidence 888 676 67888888888888887765 554444 77888888888888744 45544 6677788888888887765
Q ss_pred cc
Q 015620 153 LL 154 (403)
Q Consensus 153 ~~ 154 (403)
++
T Consensus 291 p~ 292 (565)
T KOG0472|consen 291 PY 292 (565)
T ss_pred Cc
Confidence 44
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=1.2e-24 Score=192.70 Aligned_cols=262 Identities=24% Similarity=0.292 Sum_probs=201.2
Q ss_pred ccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCC
Q 015620 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH 88 (403)
Q Consensus 9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 88 (403)
++.+++++|.+....+ .+.+|. .+.+|++.+|++. ..|.+++.+..++.|+.++|++. .+|+.+..+.+
T Consensus 47 l~~lils~N~l~~l~~-dl~nL~--------~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~ 115 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLRE-DLKNLA--------CLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLIS 115 (565)
T ss_pred hhhhhhccCchhhccH-hhhccc--------ceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhh
Confidence 4455666666554432 233333 4488999999988 78889999999999999999998 88899999999
Q ss_pred CCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccC
Q 015620 89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGN 168 (403)
Q Consensus 89 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~ 168 (403)
|..++.+.|.+.. +|+.++.+..|+.++..+|++.. .|+.+ ..+.+|..+++.+|++....+.. .. ++.|++++
T Consensus 116 l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~s-lp~~~--~~~~~l~~l~~~~n~l~~l~~~~-i~-m~~L~~ld 189 (565)
T KOG0472|consen 116 LVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQISS-LPEDM--VNLSKLSKLDLEGNKLKALPENH-IA-MKRLKHLD 189 (565)
T ss_pred hhhhhccccceee-cCchHHHHhhhhhhhcccccccc-CchHH--HHHHHHHHhhccccchhhCCHHH-HH-HHHHHhcc
Confidence 9999999999887 77788888899999999998854 45544 67888889999999988665543 33 77777766
Q ss_pred CCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCcc
Q 015620 169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSS 248 (403)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 248 (403)
+.......++ ...+.+.+|.-|++..|++. .+| +|.+++.|++|+++.|+++ .+|.+
T Consensus 190 ~~~N~L~tlP--------------------~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae 246 (565)
T KOG0472|consen 190 CNSNLLETLP--------------------PELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAE 246 (565)
T ss_pred cchhhhhcCC--------------------hhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHH
Confidence 5332222111 12233677888999999998 788 6889999999999999998 55654
Q ss_pred c-cCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCCCC
Q 015620 249 L-RNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSG 312 (403)
Q Consensus 249 ~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~~ 312 (403)
. .+++++.+|||.+|++. +.|+.++-+++|.+||+|+|.+++..++-..+ .+..+.+.|||.
T Consensus 247 ~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred Hhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 4 58999999999999998 88999999999999999999999655554444 677777888874
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=2.8e-23 Score=183.80 Aligned_cols=267 Identities=22% Similarity=0.208 Sum_probs=202.4
Q ss_pred CccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccC-CcCcCCCCccccCC
Q 015620 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG-NRLEGPLPPSLVNC 86 (403)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l 86 (403)
....++|..|+|+.++++.|+.|+.| +.||||+|+|+.+-|++|.++.+|.+|.+.+ |+|+....+.|.++
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~L--------RrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRL--------RRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhh--------ceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 45678999999999999999999888 9999999999999999999999999888766 99996666779999
Q ss_pred CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcc
Q 015620 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166 (403)
Q Consensus 87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 166 (403)
..|+.|.+.-|++.....+.|..+++|..|.+.+|.+.. ++.. ++..+.+++.+.+..|.+-... +++.+..
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~-i~~~-tf~~l~~i~tlhlA~np~icdC------nL~wla~ 211 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQS-ICKG-TFQGLAAIKTLHLAQNPFICDC------NLPWLAD 211 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhh-hccc-cccchhccchHhhhcCcccccc------ccchhhh
Confidence 999999999999999888999999999999999998843 3332 3477888999998888743211 1111110
Q ss_pred cCCC-----------------cccccccCCCCCCCcceEE------EE-EEeccchhhhhhcccceEEEcccCcccccCC
Q 015620 167 GNNI-----------------SVEVDYMTPLNSSNYYESI------IL-TIKGIDIKMERILTIFMTIDLSSNKFQGGIP 222 (403)
Q Consensus 167 ~~~~-----------------~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p 222 (403)
.... ......+.........+.. .. .....+..-++.+++|++|+|++|++++.-+
T Consensus 212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 0000 0000000000000010000 00 0111223446678999999999999998889
Q ss_pred cccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCc
Q 015620 223 EVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290 (403)
Q Consensus 223 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 290 (403)
.+|.+...+++|.|..|++....-..|.++..|+.|+|.+|+|+...|.+|..+.+|..|+|-.|.+.
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 99999999999999999998666678889999999999999999888999999999999999888875
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=3.2e-20 Score=184.73 Aligned_cols=238 Identities=22% Similarity=0.275 Sum_probs=139.9
Q ss_pred ccEEECCCCCCCCcCCCCCCCCCeEeCCCC---------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCC
Q 015620 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPL 79 (403)
Q Consensus 9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 79 (403)
-..|+++.+.++.+++....+|+.|+++.| ++|++|++++|.++ .+|.. .++|+.|++++|.++ .+
T Consensus 203 ~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~L 277 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HL 277 (788)
T ss_pred CcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCCCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hh
Confidence 445677777776555433446666666666 46666777776666 34432 234555555555555 33
Q ss_pred CccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCC-C-------------c-cCCCCccEEEc
Q 015620 80 PPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT-T-------------I-VPFPSLRIIDL 144 (403)
Q Consensus 80 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~-~-------------~-~~l~~L~~L~l 144 (403)
|..+ ++|+.|++++|+++. +|. .+++|+.|++++|++++ +|... . + ....+|+.|++
T Consensus 278 p~lp---~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdL 349 (788)
T PRK15387 278 PALP---SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSV 349 (788)
T ss_pred hhch---hhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEec
Confidence 3321 334445555555543 232 12345555555555433 11100 0 0 00135666666
Q ss_pred cCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcc
Q 015620 145 SHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEV 224 (403)
Q Consensus 145 ~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 224 (403)
++|++++.++ ...++..|...++ .+.. ++....+|+.|++++|.++ .+|..
T Consensus 350 S~N~Ls~LP~--lp~~L~~L~Ls~N----------------------~L~~----LP~l~~~L~~LdLs~N~Lt-~LP~l 400 (788)
T PRK15387 350 SDNQLASLPT--LPSELYKLWAYNN----------------------RLTS----LPALPSGLKELIVSGNRLT-SLPVL 400 (788)
T ss_pred CCCccCCCCC--CCcccceehhhcc----------------------cccc----CcccccccceEEecCCccc-CCCCc
Confidence 6666664321 1122222211110 0111 1122457899999999999 46653
Q ss_pred cCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCC
Q 015620 225 VGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG 296 (403)
Q Consensus 225 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~ 296 (403)
.++|+.|++++|+++ .+|... .+|+.|++++|+++ .+|..+.++++|+.|+|++|++++.+|..
T Consensus 401 ---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 401 ---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred ---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 367999999999998 567543 57889999999998 78989999999999999999999877764
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=6.4e-19 Score=187.48 Aligned_cols=297 Identities=16% Similarity=0.186 Sum_probs=156.1
Q ss_pred CCCCccEEECCCCCCC------CcCCC----CCCCCCeEeCCCC-----------CCCCEEECcCCcCcccCCccccCCC
Q 015620 5 GIATLYYLDLSNNFLT------NIEYF----PPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSC 63 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~------~~~~~----~~~~L~~L~l~~n-----------~~L~~L~Ls~n~l~~~~p~~~~~l~ 63 (403)
++++|+.|.+..+... ...|. ...+|+.|++.++ .+|+.|++++|.+. .+|..+..++
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~~~~~~l~ 634 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLWDGVHSLT 634 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-ccccccccCC
Confidence 4667777766544321 11221 1234666666655 46777777777776 5666677777
Q ss_pred CcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEE
Q 015620 64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID 143 (403)
Q Consensus 64 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 143 (403)
+|+.|+|+++.....+|. ++.+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|+
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~ 710 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLN 710 (1153)
T ss_pred CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEe
Confidence 777777776654435553 6677777777777766555577777777777777777765445555432 466677777
Q ss_pred ccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEE----------EEEeccchhhhhhcccceEEEcc
Q 015620 144 LSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESII----------LTIKGIDIKMERILTIFMTIDLS 213 (403)
Q Consensus 144 l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~L~~L~Ls 213 (403)
+++|...+..|.. ..+++.| .........++.......+..+. .....+.......+++|+.|+++
T Consensus 711 Lsgc~~L~~~p~~-~~nL~~L---~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 711 LSGCSRLKSFPDI-STNISWL---DLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred CCCCCCccccccc-cCCcCee---ecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence 7666443333221 1122222 11111111111000000000000 00001111112224567777777
Q ss_pred cCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCC---------------------CCCEEeccCCcCCCCCCcc
Q 015620 214 SNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLT---------------------EVESLDLSSNMLVGHIPTQ 272 (403)
Q Consensus 214 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~---------------------~L~~L~Ls~n~l~~~~p~~ 272 (403)
+|...+.+|..++++++|+.|++++|...+.+|..+ +++ +|+.|+|++|.++ .+|..
T Consensus 787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~s 864 (1153)
T PLN03210 787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWW 864 (1153)
T ss_pred CCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHH
Confidence 776666677777777777777777664333455433 344 4555555555555 45666
Q ss_pred ccCCCCCCEEeCcCC-cCccCCCCC-CCCCCCCCCcCCCCCCC
Q 015620 273 LTSLKYLSVLNLSYN-QFEGPIPRG-SQFNTFPNDSYVGNSGL 313 (403)
Q Consensus 273 ~~~l~~L~~L~L~~N-~l~~~ip~~-~~~~~~~~~~~~gn~~l 313 (403)
+..+++|+.|++++| .+. .+|.. ..+..+....+.+++.+
T Consensus 865 i~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred HhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCccc
Confidence 666777777777763 444 34332 23334444444444333
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=3.9e-20 Score=185.04 Aligned_cols=237 Identities=24% Similarity=0.338 Sum_probs=164.8
Q ss_pred CCccEEECCCCCCCCcCCCCCCCCCeEeCCCC----------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCc
Q 015620 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 76 (403)
.+...|+++++.++.++.....+++.|+|++| ++|+.|++++|.++ .+|..+. .+|+.|++++|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC
Confidence 34677888888888765544567888888888 57899999999988 5676654 37899999999998
Q ss_pred CCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchh
Q 015620 77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG 156 (403)
Q Consensus 77 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 156 (403)
.+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|++++ +|..+ .++|+.|++++|.++... ..
T Consensus 255 -~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l----p~sL~~L~Ls~N~Lt~LP-~~ 322 (754)
T PRK15370 255 -ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHL----PSGITHLNVQSNSLTALP-ET 322 (754)
T ss_pred -cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccc----hhhHHHHHhcCCccccCC-cc
Confidence 7777664 579999999999986 676554 589999999999864 44432 247889999999888543 22
Q ss_pred hhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEe
Q 015620 157 YLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNI 236 (403)
Q Consensus 157 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 236 (403)
...+++.|...++ . +..++. ...++|+.|++++|+++ .+|..+ .++|+.|+|
T Consensus 323 l~~sL~~L~Ls~N---~-------------------Lt~LP~---~l~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdL 374 (754)
T PRK15370 323 LPPGLKTLEAGEN---A-------------------LTSLPA---SLPPELQVLDVSKNQIT-VLPETL--PPTITTLDV 374 (754)
T ss_pred ccccceeccccCC---c-------------------cccCCh---hhcCcccEEECCCCCCC-cCChhh--cCCcCEEEC
Confidence 2223332221111 0 011111 11357888888888887 566554 357888888
Q ss_pred cCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccc----cCCCCCCEEeCcCCcCc
Q 015620 237 SHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQL----TSLKYLSVLNLSYNQFE 290 (403)
Q Consensus 237 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~----~~l~~L~~L~L~~N~l~ 290 (403)
++|+++ .+|..+. .+|+.|++++|++. .+|..+ ..++.+..+++.+|+++
T Consensus 375 s~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 375 SRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 888887 5665553 36888888888887 444433 34577788888888876
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=9.5e-20 Score=182.30 Aligned_cols=219 Identities=22% Similarity=0.357 Sum_probs=163.0
Q ss_pred CCCCeEeCCCC----------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCC
Q 015620 28 TNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN 97 (403)
Q Consensus 28 ~~L~~L~l~~n----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 97 (403)
.+...|+++++ +.++.|++++|.++ .+|..+. .+|++|++++|+++ .+|..+. ++|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCC
Confidence 34556666665 57899999999999 6676654 58999999999999 6787654 47999999999
Q ss_pred cCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCccccccc
Q 015620 98 QINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYM 177 (403)
Q Consensus 98 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~ 177 (403)
.+.. +|..+. .+|+.|++++|+++ .+|..+ .++|+.|++++|.+++.. ..+..++..|...++ ..
T Consensus 252 ~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~l----~~sL~~L~Ls~N~Lt~LP-~~lp~sL~~L~Ls~N---~L--- 316 (754)
T PRK15370 252 RITE-LPERLP--SALQSLDLFHNKIS-CLPENL----PEELRYLSVYDNSIRTLP-AHLPSGITHLNVQSN---SL--- 316 (754)
T ss_pred ccCc-CChhHh--CCCCEEECcCCccC-cccccc----CCCCcEEECCCCccccCc-ccchhhHHHHHhcCC---cc---
Confidence 9986 676654 58999999999996 466644 258999999999998643 332333444332221 10
Q ss_pred CCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCE
Q 015620 178 TPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVES 257 (403)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 257 (403)
..++. ...++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+.
T Consensus 317 ----------------t~LP~---~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~ 371 (754)
T PRK15370 317 ----------------TALPE---TLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITT 371 (754)
T ss_pred ----------------ccCCc---cccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCE
Confidence 01111 114679999999999994 676553 78999999999998 6777653 68999
Q ss_pred EeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCC
Q 015620 258 LDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG 296 (403)
Q Consensus 258 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~ 296 (403)
|++++|+++ .+|..+. ..|+.|++++|+++ .+|..
T Consensus 372 LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~s 406 (754)
T PRK15370 372 LDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPES 406 (754)
T ss_pred EECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchh
Confidence 999999999 5565554 46999999999998 66654
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=1.7e-21 Score=189.02 Aligned_cols=290 Identities=24% Similarity=0.291 Sum_probs=192.2
Q ss_pred EECCCCCCCCcCCCCCCCCCeEeCCCC---------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCcc
Q 015620 12 LDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPS 82 (403)
Q Consensus 12 L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 82 (403)
|||..|.+....-..+.+|+.+....| ++|+.|+.++|.++...+. + .-.+|++++++.|+++ .+|+.
T Consensus 183 ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~-p-~p~nl~~~dis~n~l~-~lp~w 259 (1081)
T KOG0618|consen 183 LDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH-P-VPLNLQYLDISHNNLS-NLPEW 259 (1081)
T ss_pred eecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc-c-ccccceeeecchhhhh-cchHH
Confidence 666666665222244445554444444 6777777777777632221 1 2246788888888887 56777
Q ss_pred ccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhh
Q 015620 83 LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFK 162 (403)
Q Consensus 83 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 162 (403)
+..+.+|+.++..+|++.. +|..+...++|+.|.+..|.+. .+|... ..+.+|++|||..|.+...+. .++..+.
T Consensus 260 i~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~l--e~~~sL~tLdL~~N~L~~lp~-~~l~v~~ 334 (1081)
T KOG0618|consen 260 IGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFL--EGLKSLRTLDLQSNNLPSLPD-NFLAVLN 334 (1081)
T ss_pred HHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcc--cccceeeeeeehhccccccch-HHHhhhh
Confidence 7778888888888888855 6777777788888888888774 344443 667888888888888875443 3333222
Q ss_pred h-hcccCCCcccccccCCCCC--CCcceEEEEEEeccc---hhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEe
Q 015620 163 A-MMHGNNISVEVDYMTPLNS--SNYYESIILTIKGID---IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNI 236 (403)
Q Consensus 163 ~-L~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 236 (403)
. +..++.............. ...++.+.+..+.+. .........|+.|+|++|.+.......+.+++.|++|+|
T Consensus 335 ~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~L 414 (1081)
T KOG0618|consen 335 ASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNL 414 (1081)
T ss_pred HHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhc
Confidence 2 3333332222222211110 001111111222222 223345788999999999998555566789999999999
Q ss_pred cCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCcc-CCCCCCCCCCCCCCcCCCCCC
Q 015620 237 SHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG-PIPRGSQFNTFPNDSYVGNSG 312 (403)
Q Consensus 237 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~ip~~~~~~~~~~~~~~gn~~ 312 (403)
++|.++ .+|.++..+..|++|...+|++. ..| .+..++.|+.+|++.|+|+. .+|......++..+++.||.+
T Consensus 415 SGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 415 SGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred ccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 999998 78899999999999999999998 667 78899999999999999974 455554457788888889885
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=4.8e-18 Score=180.85 Aligned_cols=267 Identities=19% Similarity=0.264 Sum_probs=158.1
Q ss_pred CccEEECCCCCCCCcCC-CCCCCCCeEeCCCC------------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCc
Q 015620 8 TLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74 (403)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 74 (403)
+|+.|++.++.++..+. ....+|+.|++++| ++|+.|+++++.....+| .+..+++|++|++++|.
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCS 668 (1153)
T ss_pred ccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCC
Confidence 47777777777766654 45567777777766 577788887765444666 36677788888887776
Q ss_pred CcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccc
Q 015620 75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (403)
Q Consensus 75 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 154 (403)
....+|..+.++++|+.|++++|.....+|..+ .+++|+.|++++|...+.+|.. .++|+.|++++|.+...+.
T Consensus 669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~-----~~nL~~L~L~~n~i~~lP~ 742 (1153)
T PLN03210 669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI-----STNISWLDLDETAIEEFPS 742 (1153)
T ss_pred CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc-----cCCcCeeecCCCccccccc
Confidence 555777777888888888888765444466544 5777777777777654444432 3466777777776654322
Q ss_pred hhhhhhhhhhcccCCCcccc----cccCC--------CC------------------CCCcceEEEEE----Eeccchhh
Q 015620 155 TGYLDNFKAMMHGNNISVEV----DYMTP--------LN------------------SSNYYESIILT----IKGIDIKM 200 (403)
Q Consensus 155 ~~~~~~l~~L~~~~~~~~~~----~~~~~--------~~------------------~~~~~~~~~~~----~~~~~~~~ 200 (403)
...+.++..|.......... ..+.+ +. ....+..+.+. ...++...
T Consensus 743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence 11112222111111000000 00000 00 00000001000 00001000
Q ss_pred hhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCC-cCCCCCCccccCCCCC
Q 015620 201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSN-MLVGHIPTQLTSLKYL 279 (403)
Q Consensus 201 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L 279 (403)
.+++|+.|++++|..-..+|.. ..+|+.|+|++|.++ .+|.++..+++|+.|++++| ++. .+|..+..+++|
T Consensus 823 --~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L 895 (1153)
T PLN03210 823 --NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHL 895 (1153)
T ss_pred --CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCC
Confidence 2445555555555433333332 356788888888887 78889999999999999996 455 677788899999
Q ss_pred CEEeCcCCc
Q 015620 280 SVLNLSYNQ 288 (403)
Q Consensus 280 ~~L~L~~N~ 288 (403)
+.+++++|.
T Consensus 896 ~~L~l~~C~ 904 (1153)
T PLN03210 896 ETVDFSDCG 904 (1153)
T ss_pred CeeecCCCc
Confidence 999999984
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=4.5e-22 Score=176.17 Aligned_cols=273 Identities=20% Similarity=0.141 Sum_probs=189.3
Q ss_pred CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccC-CcCCcCCChhccCCCCCcEEEc
Q 015620 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGN-NQINDNFPNWLEILPELQVLIL 118 (403)
Q Consensus 40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l 118 (403)
.-..++|..|.|+...|.+|+.+.+|+.|+|++|.|+.+-|++|.++.+|..|-+.+ |+|+....+.|.+|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 336689999999988888999999999999999999988899999999887776655 9999976688999999999999
Q ss_pred ccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCC------------CCcc
Q 015620 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNS------------SNYY 186 (403)
Q Consensus 119 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~------------~~~~ 186 (403)
.-|++.-...+. +..+++|..|.+.+|.+..+... .+..+..++.+.+...+..-.+.+.. +.+-
T Consensus 148 Nan~i~Cir~~a--l~dL~~l~lLslyDn~~q~i~~~-tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 148 NANHINCIRQDA--LRDLPSLSLLSLYDNKIQSICKG-TFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred ChhhhcchhHHH--HHHhhhcchhcccchhhhhhccc-cccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 998885544443 38889999999999988754432 35555555555543332111111110 0000
Q ss_pred eEEE-----EEEeccchhhh-hhcccceEEEcccCcccccCC-cccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEe
Q 015620 187 ESII-----LTIKGIDIKME-RILTIFMTIDLSSNKFQGGIP-EVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLD 259 (403)
Q Consensus 187 ~~~~-----~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 259 (403)
.... ..+......-+ .....+..--.+.....++.| ..|..+++|++|+|++|+++++-+.+|.++..++.|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 0000 00011111111 111111111112222333434 4588999999999999999999999999999999999
Q ss_pred ccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCC-CCCCCCCcCCCCCCCCC
Q 015620 260 LSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQ-FNTFPNDSYVGNSGLCG 315 (403)
Q Consensus 260 Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~-~~~~~~~~~~gn~~lc~ 315 (403)
|..|+|...-...|.++..|+.|+|.+|+|+..-|-..+ ...+..+.+.+||+.|.
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 999999977778899999999999999999966665422 23345566778888874
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=2e-18 Score=172.02 Aligned_cols=184 Identities=21% Similarity=0.216 Sum_probs=116.2
Q ss_pred CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcc
Q 015620 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (403)
Q Consensus 40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 119 (403)
+|+.|++++|.++ .+|.. .++|+.|++++|+++ .+|... .+|+.|++++|.+++ +|.. ..+|+.|+++
T Consensus 283 ~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~-~Lp~lp---~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS 350 (788)
T PRK15387 283 GLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQLTS-LPTL---PSGLQELSVS 350 (788)
T ss_pred hcCEEECcCCccc-ccccc---ccccceeECCCCccc-cCCCCc---ccccccccccCcccc-cccc---ccccceEecC
Confidence 3444455555444 23321 245566666666665 334321 235555566666554 3321 1478999999
Q ss_pred cccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchh
Q 015620 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK 199 (403)
Q Consensus 120 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (403)
+|++++ +|.. .++|+.|++++|.+++. |.. ..++. .+....... ..
T Consensus 351 ~N~Ls~-LP~l-----p~~L~~L~Ls~N~L~~L-P~l-~~~L~---~LdLs~N~L-------------------t~---- 396 (788)
T PRK15387 351 DNQLAS-LPTL-----PSELYKLWAYNNRLTSL-PAL-PSGLK---ELIVSGNRL-------------------TS---- 396 (788)
T ss_pred CCccCC-CCCC-----CcccceehhhccccccC-ccc-ccccc---eEEecCCcc-------------------cC----
Confidence 999865 4432 35788899999998853 321 22222 222211110 01
Q ss_pred hhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCcccc
Q 015620 200 MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLT 274 (403)
Q Consensus 200 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 274 (403)
++...+.|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+.++++|+.|+|++|++++..+..+.
T Consensus 397 LP~l~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 397 LPVLPSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred CCCcccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 1112467999999999999 46754 356889999999998 7899999999999999999999988777663
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.76 E-value=1.4e-20 Score=148.56 Aligned_cols=166 Identities=32% Similarity=0.573 Sum_probs=127.4
Q ss_pred ccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCC
Q 015620 59 FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPS 138 (403)
Q Consensus 59 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 138 (403)
+.++.+++.|.+++|+++ .+|+.++.+.+|+.|++++|+|.. +|..++.+++|+.|.++.|++ ...|..+ +.+|.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl-~~lprgf--gs~p~ 103 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRL-NILPRGF--GSFPA 103 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhh-hcCcccc--CCCch
Confidence 346677888889999988 777888889999999999999887 788888899999999988887 3456655 88888
Q ss_pred ccEEEccCCccccc-cchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcc
Q 015620 139 LRIIDLSHNEFTGV-LLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKF 217 (403)
Q Consensus 139 L~~L~l~~n~l~~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 217 (403)
|+.||+++|++... .|..|+ .+..|+.|+|++|.+
T Consensus 104 levldltynnl~e~~lpgnff--------------------------------------------~m~tlralyl~dndf 139 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFF--------------------------------------------YMTTLRALYLGDNDF 139 (264)
T ss_pred hhhhhccccccccccCCcchh--------------------------------------------HHHHHHHHHhcCCCc
Confidence 99999988887743 222221 144566677788887
Q ss_pred cccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCC
Q 015620 218 QGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSL 276 (403)
Q Consensus 218 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 276 (403)
. .+|..++++++|+.|.+..|.+- .+|..++.++.|+.|.+++|+++ .+|..++++
T Consensus 140 e-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 140 E-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred c-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 7 77777888888888888888877 67888888888888888888887 555555543
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=4e-20 Score=179.69 Aligned_cols=253 Identities=30% Similarity=0.384 Sum_probs=182.6
Q ss_pred CCCccEEECCCCCCCCcCCCCCCCCCeEeCCCC-----------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCc
Q 015620 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74 (403)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 74 (403)
+.+|+.+..+.|.+.... ..-+.|+.|+.++| .+|+++|+++|+++ .+|++++.+.+|+.+...+|+
T Consensus 198 ~~~l~~l~c~rn~ls~l~-~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSELE-ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred ccchhhhhhhhcccceEE-ecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchh
Confidence 445566666666665443 23356677777777 68899999999998 667999999999999999999
Q ss_pred CcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccC-------------------
Q 015620 75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVP------------------- 135 (403)
Q Consensus 75 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~------------------- 135 (403)
++ .+|..+..+++|+.|++..|.+.. +|....++..|++|+|..|++.. .|..+ +..
T Consensus 276 l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~-lp~~~-l~v~~~~l~~ln~s~n~l~~lp 351 (1081)
T KOG0618|consen 276 LV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPS-LPDNF-LAVLNASLNTLNVSSNKLSTLP 351 (1081)
T ss_pred HH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccc-cchHH-HhhhhHHHHHHhhhhccccccc
Confidence 97 788888888888888888888887 66677778888888888888733 33322 111
Q ss_pred ------CCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceE
Q 015620 136 ------FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMT 209 (403)
Q Consensus 136 ------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 209 (403)
.+.|+.|++.+|.++...... +.+..+|+.+++ ....+..++......+..|++
T Consensus 352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhL-------------------syNrL~~fpas~~~kle~Lee 411 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHL-------------------SYNRLNSFPASKLRKLEELEE 411 (1081)
T ss_pred cccchhhHHHHHHHHhcCcccccchhh-hccccceeeeee-------------------cccccccCCHHHHhchHHhHH
Confidence 123444444444444332211 222233333222 222334455666677889999
Q ss_pred EEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCC-CccccCCCCCCEEeCcCCc
Q 015620 210 IDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHI-PTQLTSLKYLSVLNLSYNQ 288 (403)
Q Consensus 210 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~N~ 288 (403)
|+||+|+++ .+|..+..+..|+.|...+|++. ..| .+..++.|+.+|++.|.++... |... ..+.|++||+++|.
T Consensus 412 L~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 412 LNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred Hhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 999999999 88899999999999999999998 777 7899999999999999998653 4333 33899999999997
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=7.1e-19 Score=162.87 Aligned_cols=87 Identities=26% Similarity=0.321 Sum_probs=59.5
Q ss_pred cccceEEEcccCccccc----CCcccCCCCCCCEEEecCCCCCCCcCcccc-----CCCCCCEEeccCCcCCC----CCC
Q 015620 204 LTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNISHNNLTGDIPSSLR-----NLTEVESLDLSSNMLVG----HIP 270 (403)
Q Consensus 204 ~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~Ls~n~l~~----~~p 270 (403)
.+.|+.|++++|.+++. ++..+..+++|++|++++|.+++.....+. ..+.|+.|++++|.++. .+.
T Consensus 192 ~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~ 271 (319)
T cd00116 192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLA 271 (319)
T ss_pred CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHH
Confidence 35788888888887633 334456678888888888888753222222 23688888888888762 233
Q ss_pred ccccCCCCCCEEeCcCCcCc
Q 015620 271 TQLTSLKYLSVLNLSYNQFE 290 (403)
Q Consensus 271 ~~~~~l~~L~~L~L~~N~l~ 290 (403)
..+..++.|+.+++++|.++
T Consensus 272 ~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 272 EVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHhcCCCccEEECCCCCCc
Confidence 44556678888888888886
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=1e-18 Score=161.84 Aligned_cols=235 Identities=20% Similarity=0.231 Sum_probs=141.4
Q ss_pred CCCEEECcCCcCcc------cCCccccCCCCcCEEEccCCcCcCCCCccccCCCC---CCEEEccCCcCCc----CCChh
Q 015620 40 THKVLDMRMNNFNG------KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH---LEVLNVGNNQIND----NFPNW 106 (403)
Q Consensus 40 ~L~~L~Ls~n~l~~------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~---L~~L~l~~n~l~~----~~p~~ 106 (403)
+++.++++++.+.+ .++..+..+++|++|++++|.+.+..+..+..+.+ |++|++++|.+++ .+...
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 35666776666552 23445666778888888888777555555554444 8888888887763 12234
Q ss_pred ccCC-CCCcEEEcccccccCcCCCCC--CccCCCCccEEEccCCccccccchhhhhhhh---hhcccCCCcccccccCCC
Q 015620 107 LEIL-PELQVLILRSNRFWGPIGENT--TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFK---AMMHGNNISVEVDYMTPL 180 (403)
Q Consensus 107 ~~~l-~~L~~L~l~~n~l~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~---~L~~~~~~~~~~~~~~~~ 180 (403)
+..+ ++|+.|++++|.+++.....+ .+..+++|++|++++|.+++.........+. .|+.+........ ..
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~---~~ 208 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT---DE 208 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC---hH
Confidence 4555 777888888887763221111 1245567888888887777532222222222 3333322111000 00
Q ss_pred CCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccC-----CCCCCCEEEecCCCCCC----CcCccccC
Q 015620 181 NSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG-----KLNLLKGLNISHNNLTG----DIPSSLRN 251 (403)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~----~~p~~~~~ 251 (403)
. . ..-......+++|+.|++++|.+++.....+. ..+.|++|++++|.++. .+...+..
T Consensus 209 ~-----------~-~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~ 276 (319)
T cd00116 209 G-----------A-SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAE 276 (319)
T ss_pred H-----------H-HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhc
Confidence 0 0 00011223367899999999998853332222 24799999999999972 23445666
Q ss_pred CCCCCEEeccCCcCCCC----CCccccCC-CCCCEEeCcCCcC
Q 015620 252 LTEVESLDLSSNMLVGH----IPTQLTSL-KYLSVLNLSYNQF 289 (403)
Q Consensus 252 l~~L~~L~Ls~n~l~~~----~p~~~~~l-~~L~~L~L~~N~l 289 (403)
+++|+.+++++|.++.. ....+... +.|+.+++.+|++
T Consensus 277 ~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 277 KESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 78999999999999855 34444444 6899999988864
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=2.1e-19 Score=142.02 Aligned_cols=161 Identities=31% Similarity=0.451 Sum_probs=139.3
Q ss_pred CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcc
Q 015620 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (403)
Q Consensus 40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 119 (403)
..+.|.+|+|+++ .+|..+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++.|++.. +|..|+.++.|++||++
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~-lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI-LPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc-CccccCCCchhhhhhcc
Confidence 3477889999998 78889999999999999999999 899999999999999999999976 89999999999999999
Q ss_pred cccccC-cCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch
Q 015620 120 SNRFWG-PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI 198 (403)
Q Consensus 120 ~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (403)
+|++.+ ..|..+ ..++.|+-|++++|.+.-.+++.
T Consensus 111 ynnl~e~~lpgnf--f~m~tlralyl~dndfe~lp~dv------------------------------------------ 146 (264)
T KOG0617|consen 111 YNNLNENSLPGNF--FYMTTLRALYLGDNDFEILPPDV------------------------------------------ 146 (264)
T ss_pred ccccccccCCcch--hHHHHHHHHHhcCCCcccCChhh------------------------------------------
Confidence 999865 456665 67888999999999987443321
Q ss_pred hhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCC
Q 015620 199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNL 252 (403)
Q Consensus 199 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 252 (403)
+.+.+|+.|.+..|.+- .+|.+++.+..|++|.+.+|+++ .+|..++++
T Consensus 147 ---g~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 147 ---GKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred ---hhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 22678899999999998 89999999999999999999998 777766653
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.64 E-value=8.4e-16 Score=153.24 Aligned_cols=118 Identities=36% Similarity=0.613 Sum_probs=106.2
Q ss_pred cceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCc
Q 015620 206 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLS 285 (403)
Q Consensus 206 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 285 (403)
.++.|+|++|.++|.+|..++.+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCccCCCCCCC--CCCCCCCcCCCCCCCCCCCCCCCCC
Q 015620 286 YNQFEGPIPRGSQ--FNTFPNDSYVGNSGLCGFPLLESCN 323 (403)
Q Consensus 286 ~N~l~~~ip~~~~--~~~~~~~~~~gn~~lc~~~~~~~C~ 323 (403)
+|+++|.+|.... ........+.+|+.+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999998632 1233456788999999987766664
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.40 E-value=8.9e-15 Score=135.93 Aligned_cols=191 Identities=27% Similarity=0.448 Sum_probs=153.7
Q ss_pred CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015620 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (403)
Q Consensus 42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 121 (403)
...|++.|.+. ++|..+..+..|+.+.+..|.+. .+|..++++..|..||++.|+++. +|..++.|+ |+.|.+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeEEEecC
Confidence 56899999997 89999999999999999999998 889999999999999999999987 777777665 899999999
Q ss_pred cccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhh
Q 015620 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201 (403)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (403)
++ +.+|+.+ +.++.|..||.+.|.+....+. +.
T Consensus 154 kl-~~lp~~i--g~~~tl~~ld~s~nei~slpsq--l~------------------------------------------ 186 (722)
T KOG0532|consen 154 KL-TSLPEEI--GLLPTLAHLDVSKNEIQSLPSQ--LG------------------------------------------ 186 (722)
T ss_pred cc-ccCCccc--ccchhHHHhhhhhhhhhhchHH--hh------------------------------------------
Confidence 98 4567766 6788999999999988754332 11
Q ss_pred hhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccC---CCC
Q 015620 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTS---LKY 278 (403)
Q Consensus 202 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~---l~~ 278 (403)
.+.+|+.|.+..|++. .+|+++..|+ |..||++.|+++ .+|-.|..|..|++|-|.+|.+. ..|..++. ..-
T Consensus 187 -~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHI 261 (722)
T KOG0532|consen 187 -YLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHI 261 (722)
T ss_pred -hHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceee
Confidence 1455667778888887 6777777654 889999999998 89999999999999999999998 56665543 333
Q ss_pred CCEEeCcCCc
Q 015620 279 LSVLNLSYNQ 288 (403)
Q Consensus 279 L~~L~L~~N~ 288 (403)
.++|+..-++
T Consensus 262 FKyL~~qA~q 271 (722)
T KOG0532|consen 262 FKYLSTQACQ 271 (722)
T ss_pred eeeecchhcc
Confidence 5566666664
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.37 E-value=6.8e-13 Score=126.50 Aligned_cols=199 Identities=31% Similarity=0.458 Sum_probs=146.7
Q ss_pred EEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCC-CCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015620 43 VLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH-HLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (403)
Q Consensus 43 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 121 (403)
.++++.|.+. .....+..++.++.|++.+|.++ .++.....++ +|+.|++++|.+.. +|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence 4777777764 23334556678889999999988 6777766664 89999999998877 5567788899999999999
Q ss_pred cccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhh
Q 015620 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201 (403)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (403)
++... +... +..++|+.|++++|.++......
T Consensus 174 ~l~~l-~~~~--~~~~~L~~L~ls~N~i~~l~~~~--------------------------------------------- 205 (394)
T COG4886 174 DLSDL-PKLL--SNLSNLNNLDLSGNKISDLPPEI--------------------------------------------- 205 (394)
T ss_pred hhhhh-hhhh--hhhhhhhheeccCCccccCchhh---------------------------------------------
Confidence 88543 3322 36788889999999887554321
Q ss_pred hhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCE
Q 015620 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV 281 (403)
Q Consensus 202 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 281 (403)
..+..|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..+..++.+++++.|++++|+++. ++. +..+.+++.
T Consensus 206 ~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~ 281 (394)
T COG4886 206 ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRE 281 (394)
T ss_pred hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCE
Confidence 01344777888888644 56666778888888888888887 446777888889999999998884 443 778888999
Q ss_pred EeCcCCcCccCCCCC
Q 015620 282 LNLSYNQFEGPIPRG 296 (403)
Q Consensus 282 L~L~~N~l~~~ip~~ 296 (403)
|++++|.++...|..
T Consensus 282 L~~s~n~~~~~~~~~ 296 (394)
T COG4886 282 LDLSGNSLSNALPLI 296 (394)
T ss_pred EeccCccccccchhh
Confidence 999998887655543
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.32 E-value=3.4e-14 Score=132.15 Aligned_cols=195 Identities=23% Similarity=0.311 Sum_probs=152.4
Q ss_pred CCCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccC
Q 015620 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN 85 (403)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 85 (403)
+..-...||+.|.+..++- .+.... .|+.+.+++|.+. .+|.+++++..|++|+|+.|+++ .+|..++.
T Consensus 74 ltdt~~aDlsrNR~~elp~-~~~~f~--------~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~ 142 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPE-EACAFV--------SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD 142 (722)
T ss_pred ccchhhhhccccccccCch-HHHHHH--------HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc
Confidence 3444456666666665532 222222 3377788999998 89999999999999999999999 89998888
Q ss_pred CCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhc
Q 015620 86 CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM 165 (403)
Q Consensus 86 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 165 (403)
|+ |+.|-+++|+++. +|..++.+..|..||.+.|.+. .+|..+ +.+.+|+.|.+..|++...+++..
T Consensus 143 lp-Lkvli~sNNkl~~-lp~~ig~~~tl~~ld~s~nei~-slpsql--~~l~slr~l~vrRn~l~~lp~El~-------- 209 (722)
T KOG0532|consen 143 LP-LKVLIVSNNKLTS-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQL--GYLTSLRDLNVRRNHLEDLPEELC-------- 209 (722)
T ss_pred Cc-ceeEEEecCcccc-CCcccccchhHHHhhhhhhhhh-hchHHh--hhHHHHHHHHHhhhhhhhCCHHHh--------
Confidence 86 8999999999987 8888998899999999999984 455555 889999999999998875543321
Q ss_pred ccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCc
Q 015620 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI 245 (403)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 245 (403)
.-.|..||+|.|+++ .+|-.|.++..|++|-|.+|.+. ..
T Consensus 210 --------------------------------------~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SP 249 (722)
T KOG0532|consen 210 --------------------------------------SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SP 249 (722)
T ss_pred --------------------------------------CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CC
Confidence 113778999999999 89999999999999999999998 66
Q ss_pred CccccCC---CCCCEEeccCCc
Q 015620 246 PSSLRNL---TEVESLDLSSNM 264 (403)
Q Consensus 246 p~~~~~l---~~L~~L~Ls~n~ 264 (403)
|..+.-. .=-++|+..-++
T Consensus 250 PAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 250 PAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hHHHHhccceeeeeeecchhcc
Confidence 6554322 234677777664
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.28 E-value=4.8e-12 Score=120.72 Aligned_cols=182 Identities=32% Similarity=0.474 Sum_probs=141.4
Q ss_pred CCCCEEECcCCcCcccCCccccCCC-CcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEE
Q 015620 39 LTHKVLDMRMNNFNGKIPRKFVKSC-NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI 117 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 117 (403)
+.++.|++.+|.++ .+|.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|++.. +|...+.++.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhhee
Confidence 45699999999998 7777777775 9999999999999 777778999999999999999998 666555889999999
Q ss_pred cccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccc
Q 015620 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID 197 (403)
Q Consensus 118 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (403)
+++|++. .+|... .....|+++.+++|.+..... . .
T Consensus 193 ls~N~i~-~l~~~~--~~~~~L~~l~~~~N~~~~~~~-~-~--------------------------------------- 228 (394)
T COG4886 193 LSGNKIS-DLPPEI--ELLSALEELDLSNNSIIELLS-S-L--------------------------------------- 228 (394)
T ss_pred ccCCccc-cCchhh--hhhhhhhhhhhcCCcceecch-h-h---------------------------------------
Confidence 9999985 455432 345569999999996322211 0 1
Q ss_pred hhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCcccc
Q 015620 198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLT 274 (403)
Q Consensus 198 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 274 (403)
..+..+..+.+.+|.+. ..+..++.++.++.|++++|.++ .++. ++.+.+++.|++++|.+....|....
T Consensus 229 ----~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 229 ----SNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred ----hhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhhhc
Confidence 11455666677788776 44777888888999999999998 4444 88889999999999998866665543
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.24 E-value=1.5e-11 Score=122.87 Aligned_cols=108 Identities=29% Similarity=0.409 Sum_probs=86.3
Q ss_pred CCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015620 41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (403)
Q Consensus 41 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 120 (403)
++.|+|++|.+.|.+|..++.+++|+.|+|++|.+.+.+|..++++++|+.|++++|.+++.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 47788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccccCcCCCCCCccC-CCCccEEEccCCccc
Q 015620 121 NRFWGPIGENTTIVP-FPSLRIIDLSHNEFT 150 (403)
Q Consensus 121 n~l~~~~~~~~~~~~-l~~L~~L~l~~n~l~ 150 (403)
|++++.+|..+ .. ..++..+++.+|...
T Consensus 500 N~l~g~iP~~l--~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAAL--GGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHH--hhccccCceEEecCCccc
Confidence 88888888765 33 245667777777543
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.22 E-value=2.9e-12 Score=110.69 Aligned_cols=131 Identities=31% Similarity=0.303 Sum_probs=96.2
Q ss_pred CCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceE
Q 015620 109 ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYES 188 (403)
Q Consensus 109 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~ 188 (403)
..+.|+++|+++|.++ .+.+.. .-.|.++.|++++|.+..+.. +
T Consensus 282 TWq~LtelDLS~N~I~-~iDESv--KL~Pkir~L~lS~N~i~~v~n------L--------------------------- 325 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESV--KLAPKLRRLILSQNRIRTVQN------L--------------------------- 325 (490)
T ss_pred hHhhhhhccccccchh-hhhhhh--hhccceeEEeccccceeeehh------h---------------------------
Confidence 3456888888888773 455555 567888888888888774321 1
Q ss_pred EEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCC
Q 015620 189 IILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGH 268 (403)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 268 (403)
..+++|+.||||+|.++ .+..+-.++-+.+.|.|++|.+. ....++.+-+|..||+++|+|...
T Consensus 326 -------------a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~l 389 (490)
T KOG1259|consen 326 -------------AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEEL 389 (490)
T ss_pred -------------hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhH
Confidence 12677888889988887 55566667788889999999886 223466777888899999988754
Q ss_pred C-CccccCCCCCCEEeCcCCcCcc
Q 015620 269 I-PTQLTSLKYLSVLNLSYNQFEG 291 (403)
Q Consensus 269 ~-p~~~~~l~~L~~L~L~~N~l~~ 291 (403)
. -..+++++.|+++.|.+|.+.+
T Consensus 390 deV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 390 DEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred HHhcccccccHHHHHhhcCCCccc
Confidence 2 3567888999999999998873
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.7e-12 Score=115.26 Aligned_cols=209 Identities=24% Similarity=0.251 Sum_probs=106.8
Q ss_pred CCCCcCEEEccCCcCcCCCC--ccccCCCCCCEEEccCCcCCcCCC--hhccCCCCCcEEEcccccccCcCCCCCCccCC
Q 015620 61 KSCNLTSLNLNGNRLEGPLP--PSLVNCHHLEVLNVGNNQINDNFP--NWLEILPELQVLILRSNRFWGPIGENTTIVPF 136 (403)
Q Consensus 61 ~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 136 (403)
++.+|+...|.++.+. ..+ .....|++++.|||+.|-+....| .....+++|+.|.++.|++.-....... ..+
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-LLL 196 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-hhh
Confidence 4566666677766665 233 244566777777777776654322 2234667777777777776433333221 345
Q ss_pred CCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCc
Q 015620 137 PSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNK 216 (403)
Q Consensus 137 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 216 (403)
+.|+.|.++.|.++.-........++.+..+.+...+.. .+ ...-...+..|+.|||++|+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~----------------~~---~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII----------------LI---KATSTKILQTLQELDLSNNN 257 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc----------------ce---ecchhhhhhHHhhccccCCc
Confidence 667777777776663322222222222222222111000 00 00011224556677777776
Q ss_pred ccccC-CcccCCCCCCCEEEecCCCCCCC-cCcc-----ccCCCCCCEEeccCCcCCCC-CCccccCCCCCCEEeCcCCc
Q 015620 217 FQGGI-PEVVGKLNLLKGLNISHNNLTGD-IPSS-----LRNLTEVESLDLSSNMLVGH-IPTQLTSLKYLSVLNLSYNQ 288 (403)
Q Consensus 217 l~~~~-p~~~~~l~~L~~L~L~~n~l~~~-~p~~-----~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~N~ 288 (403)
+-... -...+.++.|..|+++.+.+... .|+. -...++|+.|+++.|++... --..+..+++|+.|....|.
T Consensus 258 li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 258 LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred ccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 65222 13345667777777777766531 1221 23456677777777776421 11234445566666666666
Q ss_pred Cc
Q 015620 289 FE 290 (403)
Q Consensus 289 l~ 290 (403)
++
T Consensus 338 ln 339 (505)
T KOG3207|consen 338 LN 339 (505)
T ss_pred cc
Confidence 65
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.19 E-value=1.5e-12 Score=114.70 Aligned_cols=190 Identities=21% Similarity=0.241 Sum_probs=115.6
Q ss_pred CCCCcCEEEccCCcCcCCCCcc----ccCCCCCCEEEccCCcCCcCCChh-------------ccCCCCCcEEEcccccc
Q 015620 61 KSCNLTSLNLNGNRLEGPLPPS----LVNCHHLEVLNVGNNQINDNFPNW-------------LEILPELQVLILRSNRF 123 (403)
Q Consensus 61 ~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~l~~n~l~~~~p~~-------------~~~l~~L~~L~l~~n~l 123 (403)
.+++|++|+||+|.+...-+.. +..++.|++|.|.+|.+...--.. ...-++|+++...+|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 4556777777777666443333 345666777777776654211111 12234566666666665
Q ss_pred cCcCCCCC--CccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhh
Q 015620 124 WGPIGENT--TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201 (403)
Q Consensus 124 ~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (403)
.......+ .+...+.|+.+.++.|.+........ ...+
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al----------------------------------------~eal 209 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTAL----------------------------------------AEAL 209 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHH----------------------------------------HHHH
Confidence 22111100 12334556666666665542211111 1223
Q ss_pred hhcccceEEEcccCccccc----CCcccCCCCCCCEEEecCCCCCCCcCccc-----cCCCCCCEEeccCCcCCCC----
Q 015620 202 RILTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNISHNNLTGDIPSSL-----RNLTEVESLDLSSNMLVGH---- 268 (403)
Q Consensus 202 ~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~Ls~n~l~~~---- 268 (403)
.+++.|+.|||..|-++.. +...+..+++|+.|++++|.++..-..++ ...++|++|.+.+|.++..
T Consensus 210 ~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~ 289 (382)
T KOG1909|consen 210 EHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA 289 (382)
T ss_pred HhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH
Confidence 4588999999999998743 44567788999999999999975433332 2368999999999999754
Q ss_pred CCccccCCCCCCEEeCcCCcCc
Q 015620 269 IPTQLTSLKYLSVLNLSYNQFE 290 (403)
Q Consensus 269 ~p~~~~~l~~L~~L~L~~N~l~ 290 (403)
+...+...+.|..|+|++|.+.
T Consensus 290 la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 290 LAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHhcchhhHHhcCCccccc
Confidence 2233455788999999999983
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.1e-11 Score=112.15 Aligned_cols=133 Identities=25% Similarity=0.312 Sum_probs=62.5
Q ss_pred CCCCccEEECCCCCCCCcCC----CCCCCCCeEeCCCCCCCCEEECcCCcCcccCC--ccccCCCCcCEEEccCCcCcCC
Q 015620 5 GIATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIP--RKFVKSCNLTSLNLNGNRLEGP 78 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~ 78 (403)
++++|+...|.+..+..... ..+++++. |||++|-+....| .-...+++|+.|+++.|++...
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~-----------LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~ 187 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRD-----------LDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF 187 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCccee-----------ecchhhhHHhHHHHHHHHHhcccchhcccccccccCC
Confidence 45678888887777665542 34555554 4555554442111 1223455555555555555421
Q ss_pred CCcc-ccCCCCCCEEEccCCcCCcCCChh-ccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccc
Q 015620 79 LPPS-LVNCHHLEVLNVGNNQINDNFPNW-LEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (403)
Q Consensus 79 ~p~~-~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 150 (403)
.... -..++.|+.|.++.|.++-..-.+ ...+|+|+.|++..|.... ........+..|+.|||++|.+-
T Consensus 188 ~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~--~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 188 ISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL--IKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred ccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc--eecchhhhhhHHhhccccCCccc
Confidence 1111 113445555566555555322221 2244556666665553111 11111133445556666655544
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=4.3e-11 Score=98.73 Aligned_cols=106 Identities=27% Similarity=0.413 Sum_probs=40.6
Q ss_pred CCCEEECcCCcCcccCCcccc-CCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhc-cCCCCCcEEE
Q 015620 40 THKVLDMRMNNFNGKIPRKFV-KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWL-EILPELQVLI 117 (403)
Q Consensus 40 ~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ 117 (403)
+++.|+|++|.|+ .+. .++ .+.+|+.|++++|.|+ .++ .+..+++|++|++++|+|+.. +..+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence 3478888888887 343 454 5778899999999988 453 577889999999999999874 3334 3588999999
Q ss_pred cccccccCcCCCCCCccCCCCccEEEccCCcccc
Q 015620 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151 (403)
Q Consensus 118 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 151 (403)
+++|++.. +.+...+..+++|+.|++.+|.++.
T Consensus 95 L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 95 LSNNKISD-LNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp -TTS---S-CCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CcCCcCCC-hHHhHHHHcCCCcceeeccCCcccc
Confidence 99998854 3333344678899999999998874
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=2.4e-11 Score=100.18 Aligned_cols=127 Identities=29% Similarity=0.382 Sum_probs=51.2
Q ss_pred CCCccEEECCCCCCCCcCCCCCC-CCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccc-
Q 015620 6 IATLYYLDLSNNFLTNIEYFPPT-NMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL- 83 (403)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~~~~~-~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~- 83 (403)
...+++|+|.+|.|+.+.. +. .|. +|+.||+++|.|+ .++ .+..++.|++|++++|+|+ .+++.+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~--L~~~l~--------~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~ 84 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIEN--LGATLD--------KLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLD 84 (175)
T ss_dssp ------------------S----TT-T--------T--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHH
T ss_pred ccccccccccccccccccc--hhhhhc--------CCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchH
Confidence 3457889999999987642 22 233 3488999999998 443 5778999999999999999 565555
Q ss_pred cCCCCCCEEEccCCcCCcCCC-hhccCCCCCcEEEcccccccCcCCCC--CCccCCCCccEEEccC
Q 015620 84 VNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGEN--TTIVPFPSLRIIDLSH 146 (403)
Q Consensus 84 ~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~~l~~L~~L~l~~ 146 (403)
..+++|++|++++|+|..... ..+..+++|+.|++.+|.++.. +.. +.+..+|+|+.||-..
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEE
T ss_pred HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEE
Confidence 468999999999999986322 4567899999999999998643 221 1235678888887543
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=1.5e-11 Score=106.35 Aligned_cols=81 Identities=26% Similarity=0.338 Sum_probs=48.8
Q ss_pred CcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEE
Q 015620 64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID 143 (403)
Q Consensus 64 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 143 (403)
.|+++||++|.|+ .+.++..-.++++.|++++|.|... +.+..+++|+.||+++|.++. +..+- ..+-+.+.|.
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh--~KLGNIKtL~ 358 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWH--LKLGNIKTLK 358 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhH--hhhcCEeeee
Confidence 4666677777666 5555666666677777777766643 235666667777777766632 22222 3455666666
Q ss_pred ccCCccc
Q 015620 144 LSHNEFT 150 (403)
Q Consensus 144 l~~n~l~ 150 (403)
++.|.+.
T Consensus 359 La~N~iE 365 (490)
T KOG1259|consen 359 LAQNKIE 365 (490)
T ss_pred hhhhhHh
Confidence 6666554
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.99 E-value=3.1e-10 Score=77.09 Aligned_cols=58 Identities=29% Similarity=0.424 Sum_probs=26.4
Q ss_pred CCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCc
Q 015620 41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQ 98 (403)
Q Consensus 41 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 98 (403)
|++|++++|.++...++.|.++++|++|++++|+++...|..|.++++|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3444444444443333444444444444444444443333444444444444444443
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.98 E-value=3.8e-10 Score=76.64 Aligned_cols=61 Identities=36% Similarity=0.495 Sum_probs=47.6
Q ss_pred CCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccc
Q 015620 63 CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123 (403)
Q Consensus 63 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 123 (403)
++|++|++++|+++...+..|.++++|++|++++|.++...|.+|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888855556778888888888888888877777788888888888888764
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.89 E-value=4.8e-10 Score=107.33 Aligned_cols=103 Identities=29% Similarity=0.304 Sum_probs=48.6
Q ss_pred CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015620 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (403)
Q Consensus 42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 121 (403)
..|++..|.|. .+...+..+++|++|++++|.|+... .+..++.|+.|++++|.|+.. ..+..++.|+.+++++|
T Consensus 98 ~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 98 EALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYN 172 (414)
T ss_pred eeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCCcc
Confidence 55555555554 22222444555555555555555221 234445555555555555542 22333555555555555
Q ss_pred cccCcCCCCCCccCCCCccEEEccCCcccc
Q 015620 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151 (403)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 151 (403)
.+...-+... ..+.+++.+++.+|.+..
T Consensus 173 ~i~~ie~~~~--~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 173 RIVDIENDEL--SELISLEELDLGGNSIRE 200 (414)
T ss_pred hhhhhhhhhh--hhccchHHHhccCCchhc
Confidence 5533222001 344455555555555543
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=1.4e-09 Score=111.58 Aligned_cols=128 Identities=23% Similarity=0.261 Sum_probs=72.6
Q ss_pred CCccEEECCCCCCCCcCC-CCCCCCCeEeCCCCCCCCEEECcCCc--CcccCCccccCCCCcCEEEccCCcCcCCCCccc
Q 015620 7 ATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSNLTHKVLDMRMNN--FNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 83 (403)
...+.+.+.+|.+..+.. ...++| ++|-+..|. +....++.|..++.|+.|||++|.--+.+|..+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L-----------~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I 591 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKL-----------RTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI 591 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCcc-----------ceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence 456677777777665542 233344 344444443 332222335556666666666665444666666
Q ss_pred cCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCc
Q 015620 84 VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148 (403)
Q Consensus 84 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 148 (403)
+++-+|++|++++..+.. +|..+.++..|.+|++..+.....++... ..+++|++|.+....
T Consensus 592 ~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~--~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 592 GELVHLRYLDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRLESIPGIL--LELQSLRVLRLPRSA 653 (889)
T ss_pred hhhhhhhcccccCCCccc-cchHHHHHHhhheeccccccccccccchh--hhcccccEEEeeccc
Confidence 666666666666666664 66666666666666666655434443332 446666666665543
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.88 E-value=1.6e-10 Score=110.56 Aligned_cols=215 Identities=28% Similarity=0.315 Sum_probs=135.7
Q ss_pred CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015620 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 118 (403)
..++.++++.|.+. .+-..+..+++|+.|++.+|+|. .+...+..+++|++|++++|.|+...+ +..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchhhhee
Confidence 34466778888887 34455778899999999999999 455447789999999999999988543 567778999999
Q ss_pred ccccccCcCCCCCCccCCCCccEEEccCCccccccch--hhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEecc
Q 015620 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT--GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGI 196 (403)
Q Consensus 119 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (403)
++|.++. +.. + ..+++|+.+++++|.+...... .....++.+....+ .+...
T Consensus 148 ~~N~i~~-~~~-~--~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n---~i~~i------------------- 201 (414)
T KOG0531|consen 148 SGNLISD-ISG-L--ESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN---SIREI------------------- 201 (414)
T ss_pred ccCcchh-ccC-C--ccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC---chhcc-------------------
Confidence 9999843 222 2 5588999999999998866552 21222222211111 00000
Q ss_pred chhhhhhcccceEEEcccCcccccCCcccCCCC--CCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCcccc
Q 015620 197 DIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN--LLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLT 274 (403)
Q Consensus 197 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 274 (403)
.....+..+..+++..|.++..-+ +..+. +|+.+++++|.+. .++..+..+..+..|++.+|++...- .+.
T Consensus 202 --~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~ 274 (414)
T KOG0531|consen 202 --EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLE 274 (414)
T ss_pred --cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--ccc
Confidence 001112333444666776663222 11222 2778888888876 44455666777888888888776432 133
Q ss_pred CCCCCCEEeCcCCcCc
Q 015620 275 SLKYLSVLNLSYNQFE 290 (403)
Q Consensus 275 ~l~~L~~L~L~~N~l~ 290 (403)
....+..+....|.+.
T Consensus 275 ~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 275 RLPKLSELWLNDNKLA 290 (414)
T ss_pred ccchHHHhccCcchhc
Confidence 4455556666666654
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.83 E-value=3.2e-10 Score=100.12 Aligned_cols=149 Identities=24% Similarity=0.250 Sum_probs=96.5
Q ss_pred CCCCCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCccc-------------CCccccCCCCcCEEEc
Q 015620 4 LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK-------------IPRKFVKSCNLTSLNL 70 (403)
Q Consensus 4 ~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~-------------~p~~~~~l~~L~~L~L 70 (403)
++.+.|+++|||.|.+....+..+ ..| ++++..|+.|.|.+|.+.-. .....++-+.|+.+..
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l---~~l-l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGL---EEL-LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred hcCCceeEeeccccccCccchHHH---HHH-HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 356788888888888875544111 111 22234556667777766511 1112334568999999
Q ss_pred cCCcCcCC----CCccccCCCCCCEEEccCCcCCcC----CChhccCCCCCcEEEcccccccCcCCCC--CCccCCCCcc
Q 015620 71 NGNRLEGP----LPPSLVNCHHLEVLNVGNNQINDN----FPNWLEILPELQVLILRSNRFWGPIGEN--TTIVPFPSLR 140 (403)
Q Consensus 71 ~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~~l~~L~ 140 (403)
+.|++... +...|...+.|+.+.++.|.|... +...+..+++|++||+.+|.++..-... -++..++.|+
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 99998732 223467788999999999988532 2245678999999999999885432111 1236678899
Q ss_pred EEEccCCccccccchh
Q 015620 141 IIDLSHNEFTGVLLTG 156 (403)
Q Consensus 141 ~L~l~~n~l~~~~~~~ 156 (403)
.|+++++.+...-..+
T Consensus 245 El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIA 260 (382)
T ss_pred eecccccccccccHHH
Confidence 9999998887544333
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.52 E-value=1.4e-07 Score=96.96 Aligned_cols=109 Identities=28% Similarity=0.260 Sum_probs=87.8
Q ss_pred CCCCccEEECCCCC--CCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCcc
Q 015620 5 GIATLYYLDLSNNF--LTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPS 82 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~--l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 82 (403)
..+.|++|-+.+|. +..+....|..++.| ++|||++|.--+.+|+.++++-+|++|+++++.+. .+|..
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~L--------rVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~ 613 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLL--------RVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSG 613 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcce--------EEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchH
Confidence 45678888888886 555544556667666 88888887666789999999999999999999999 89999
Q ss_pred ccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccccc
Q 015620 83 LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR 122 (403)
Q Consensus 83 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 122 (403)
+.++++|.+|++..+.-...+|.....|++|++|.+..-.
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 9999999999999887666567777779999999887653
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.50 E-value=2.8e-09 Score=102.60 Aligned_cols=125 Identities=21% Similarity=0.133 Sum_probs=91.8
Q ss_pred CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChh-ccCCCCCcEEE
Q 015620 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNW-LEILPELQVLI 117 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~ 117 (403)
..|.+.+.++|.+. ....++.-++.|+.|+|++|+++ .. +.+..|++|++|||++|.+.. +|.. ...+ +|+.|.
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v-~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KV-DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hh-HHHHhcccccccccccchhcc-ccccchhhh-hheeee
Confidence 57788888888887 66667777888999999999998 33 378889999999999999886 4532 2233 489999
Q ss_pred cccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcc
Q 015620 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISV 172 (403)
Q Consensus 118 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~ 172 (403)
+++|.++..- .+.++.+|+.||+++|-+.+--.-.++..|..|..+.+.+.
T Consensus 239 lrnN~l~tL~----gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 239 LRNNALTTLR----GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred ecccHHHhhh----hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 9999875432 23678899999999998876544444556666666555443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.5e-09 Score=93.95 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=40.0
Q ss_pred cCEEEccCCcCcC-CCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEE
Q 015620 65 LTSLNLNGNRLEG-PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID 143 (403)
Q Consensus 65 L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 143 (403)
|+.|||++..++. .+-..++.|++|+.|.+.++++...+...+.+-.+|+.|+++.+.=.........+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 5555555555441 111223445555555555555555444455555555555555442111111111224455555566
Q ss_pred ccCCccc
Q 015620 144 LSHNEFT 150 (403)
Q Consensus 144 l~~n~l~ 150 (403)
++.+.++
T Consensus 267 lsWc~l~ 273 (419)
T KOG2120|consen 267 LSWCFLF 273 (419)
T ss_pred chHhhcc
Confidence 6555544
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.44 E-value=5.4e-09 Score=100.69 Aligned_cols=106 Identities=27% Similarity=0.303 Sum_probs=74.6
Q ss_pred cccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEe
Q 015620 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283 (403)
Q Consensus 204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 283 (403)
++.++.|+|++|+++. +. .+..++.|++|||++|.+. .+|.--..-..|..|.+++|.++.. ..+.++++|+.||
T Consensus 186 l~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhhhhhhccc
Confidence 6778889999999883 33 6778889999999999988 4554222223589999999988743 2467888999999
Q ss_pred CcCCcCccCCCC--CCCCCCCCCCcCCCCCCCC
Q 015620 284 LSYNQFEGPIPR--GSQFNTFPNDSYVGNSGLC 314 (403)
Q Consensus 284 L~~N~l~~~ip~--~~~~~~~~~~~~~gn~~lc 314 (403)
+++|-|++.-.- ...+..+..+.+.|||..|
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 999988753111 1122334556688888777
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=4.2e-09 Score=91.28 Aligned_cols=58 Identities=24% Similarity=0.253 Sum_probs=31.3
Q ss_pred CCCEEEccCCcCCcC-CChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCC
Q 015620 88 HLEVLNVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHN 147 (403)
Q Consensus 88 ~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 147 (403)
.|+++||++..|+.. +-..+..+.+|+.|.+.++++.+.+...+ ..-.+|+.++++.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i--AkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI--AKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH--hccccceeeccccc
Confidence 466666666655531 11233455666666666666654443333 44456666666653
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=1.3e-07 Score=82.21 Aligned_cols=222 Identities=17% Similarity=0.218 Sum_probs=113.3
Q ss_pred CEEECcCCcCcccC-Ccccc-CCCCcCEEEccCCcCc--CCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEE
Q 015620 42 KVLDMRMNNFNGKI-PRKFV-KSCNLTSLNLNGNRLE--GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI 117 (403)
Q Consensus 42 ~~L~Ls~n~l~~~~-p~~~~-~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 117 (403)
+.|.+.++.|-..- -..|+ ..+.+++|+|.+|.|+ .++...+.+|+.|++|+++.|++...+...-..+.+|++|.
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lV 127 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLV 127 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEE
Confidence 44555555544211 11233 3567778888888777 23444456778888888888877653322113456777777
Q ss_pred cccccccCcCCCCCCccCCCCccEEEccCCccccccch-----hhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEE
Q 015620 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT-----GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILT 192 (403)
Q Consensus 118 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (403)
|.+..+.-.-... .+..+|.++.|+++.|++...... .+......+....+.... +.+
T Consensus 128 LNgT~L~w~~~~s-~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~-----------w~~----- 190 (418)
T KOG2982|consen 128 LNGTGLSWTQSTS-SLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL-----------WLN----- 190 (418)
T ss_pred EcCCCCChhhhhh-hhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH-----------HHH-----
Confidence 7776652211111 125567777777777754322111 111111111111100000 000
Q ss_pred EeccchhhhhhcccceEEEcccCccccc-CCcccCCCCCCCEEEecCCCCCC-CcCccccCCCCCCEEeccCCcCCCCCC
Q 015620 193 IKGIDIKMERILTIFMTIDLSSNKFQGG-IPEVVGKLNLLKGLNISHNNLTG-DIPSSLRNLTEVESLDLSSNMLVGHIP 270 (403)
Q Consensus 193 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p 270 (403)
.....+..|++..+-+..+.+... ....+..++.+.-|+|+.|+|.. .--+++.++++|.-|.+++|.+.+...
T Consensus 191 ----~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 191 ----KNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred ----HHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 001122356666677777766532 22334456666677777777753 223456677777777777777754322
Q ss_pred c------cccCCCCCCEEeC
Q 015620 271 T------QLTSLKYLSVLNL 284 (403)
Q Consensus 271 ~------~~~~l~~L~~L~L 284 (403)
. .++.+++++.|+=
T Consensus 267 ~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 267 GGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred CCcceEEEEeeccceEEecC
Confidence 1 2345555655543
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.21 E-value=6.6e-08 Score=74.42 Aligned_cols=98 Identities=24% Similarity=0.303 Sum_probs=80.3
Q ss_pred cccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEe
Q 015620 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283 (403)
Q Consensus 204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 283 (403)
...|+..+|++|.+....+.....++.++.|++++|.++ .+|.++..++.|+.|+++.|.+. ..|..+..+.++..||
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 456888999999999555554566779999999999999 88999999999999999999998 5677777799999999
Q ss_pred CcCCcCccCCCCCCCCCCCCC
Q 015620 284 LSYNQFEGPIPRGSQFNTFPN 304 (403)
Q Consensus 284 L~~N~l~~~ip~~~~~~~~~~ 304 (403)
.-+|.+. .||......+...
T Consensus 130 s~~na~~-eid~dl~~s~~~a 149 (177)
T KOG4579|consen 130 SPENARA-EIDVDLFYSSLPA 149 (177)
T ss_pred CCCCccc-cCcHHHhccccHH
Confidence 9999987 7776644444443
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.20 E-value=4.6e-07 Score=77.87 Aligned_cols=89 Identities=17% Similarity=0.116 Sum_probs=46.5
Q ss_pred ccceEEEcccCcccccC-----CcccCCCCCCCEEEecCCCCCC----CcCccccCCCCCCEEeccCCcCCCCCCccc--
Q 015620 205 TIFMTIDLSSNKFQGGI-----PEVVGKLNLLKGLNISHNNLTG----DIPSSLRNLTEVESLDLSSNMLVGHIPTQL-- 273 (403)
Q Consensus 205 ~~L~~L~Ls~n~l~~~~-----p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~-- 273 (403)
..|+.+.+..|.|...- -..+..+.+|+.|+|..|-++. .+...+..++.|+.|.+.+|-++......+
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 45666666666554221 1123345667777777776652 112233445566667776666654432221
Q ss_pred ----cCCCCCCEEeCcCCcCccCC
Q 015620 274 ----TSLKYLSVLNLSYNQFEGPI 293 (403)
Q Consensus 274 ----~~l~~L~~L~L~~N~l~~~i 293 (403)
...++|..|-..+|...+-+
T Consensus 265 ~f~e~~~p~l~~L~~~Yne~~~~~ 288 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNERRGGI 288 (388)
T ss_pred HhhhhcCCCccccccchhhhcCce
Confidence 12355666666666665443
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.20 E-value=1.3e-06 Score=54.32 Aligned_cols=37 Identities=49% Similarity=0.776 Sum_probs=17.4
Q ss_pred CcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCc
Q 015620 64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND 101 (403)
Q Consensus 64 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 101 (403)
+|++|++++|+++ .+|+.+++|++|++|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 4455555555555 344444555555555555555443
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.14 E-value=4.9e-08 Score=75.11 Aligned_cols=79 Identities=30% Similarity=0.398 Sum_probs=50.3
Q ss_pred CEEECcCCcCcccCCcccc-CCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015620 42 KVLDMRMNNFNGKIPRKFV-KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (403)
Q Consensus 42 ~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 120 (403)
+..+|++|.+. .+|..|. .++.++.|++++|.++ .+|..++.++.|+.|+++.|.+.. .|..+..+.++..|+..+
T Consensus 56 ~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 56 TKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred EEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcCCC
Confidence 66667777666 4444443 3446666677777766 666666667777777777776665 555555566666666666
Q ss_pred ccc
Q 015620 121 NRF 123 (403)
Q Consensus 121 n~l 123 (403)
|..
T Consensus 133 na~ 135 (177)
T KOG4579|consen 133 NAR 135 (177)
T ss_pred Ccc
Confidence 655
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=1.6e-06 Score=75.64 Aligned_cols=220 Identities=18% Similarity=0.172 Sum_probs=131.4
Q ss_pred cccCCCCcCEEEccCCcCcCCCC-cccc-CCCCCCEEEccCCcCCcC--CChhccCCCCCcEEEcccccccCcCCCCCCc
Q 015620 58 KFVKSCNLTSLNLNGNRLEGPLP-PSLV-NCHHLEVLNVGNNQINDN--FPNWLEILPELQVLILRSNRFWGPIGENTTI 133 (403)
Q Consensus 58 ~~~~l~~L~~L~L~~n~l~~~~p-~~~~-~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 133 (403)
.+.....++-|.+.++.|...-- ..|+ .++.++.+||.+|.|+.- +...+.+||.|++|+++.|++...|...-
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-- 117 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-- 117 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--
Confidence 33444456677777776652211 1232 467899999999999862 22345689999999999999976654432
Q ss_pred cCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcc
Q 015620 134 VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLS 213 (403)
Q Consensus 134 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 213 (403)
..+.+|+.|-|.+..+.-.....++..++.++.++....+..-+. .. ........+.+.+|++-
T Consensus 118 ~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n------~D----------d~c~e~~s~~v~tlh~~ 181 (418)
T KOG2982|consen 118 LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLN------LD----------DNCIEDWSTEVLTLHQL 181 (418)
T ss_pred ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhc------cc----------cccccccchhhhhhhcC
Confidence 356789999999988765544455555555544433111000000 00 00000012233333333
Q ss_pred cCcccc--cCCcccCCCCCCCEEEecCCCCCCC-cCccccCCCCCCEEeccCCcCCCCC-CccccCCCCCCEEeCcCCcC
Q 015620 214 SNKFQG--GIPEVVGKLNLLKGLNISHNNLTGD-IPSSLRNLTEVESLDLSSNMLVGHI-PTQLTSLKYLSVLNLSYNQF 289 (403)
Q Consensus 214 ~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~N~l 289 (403)
.|.... .+..--.-++++..+-+..|.+... ....+..++.+..|+|+.|+|.... -+.+.++++|..|.+++|.+
T Consensus 182 ~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 182 PCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred CcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 332210 0111112357788888888877632 2345667788889999999997542 35678899999999999998
Q ss_pred ccCCCC
Q 015620 290 EGPIPR 295 (403)
Q Consensus 290 ~~~ip~ 295 (403)
..++-.
T Consensus 262 ~d~l~~ 267 (418)
T KOG2982|consen 262 SDPLRG 267 (418)
T ss_pred cccccC
Confidence 765443
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=2.9e-06 Score=52.74 Aligned_cols=36 Identities=42% Similarity=0.697 Sum_probs=17.8
Q ss_pred CCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCC
Q 015620 230 LLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLV 266 (403)
Q Consensus 230 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 266 (403)
+|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=5.9e-05 Score=70.32 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=14.9
Q ss_pred ccceEEEcccCcccccCCcccCCCCCCCEEEecCC
Q 015620 205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239 (403)
Q Consensus 205 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 239 (403)
++|+.|++++|... ..|..+. .+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 45555555555543 2232221 34555555544
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.95 E-value=2.4e-06 Score=73.54 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=54.2
Q ss_pred hcccceEEEcccCccccc----CCcccCCCCCCCEEEecCCCCCCCcCccc------cCCCCCCEEeccCCcCCCCCCcc
Q 015620 203 ILTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNISHNNLTGDIPSSL------RNLTEVESLDLSSNMLVGHIPTQ 272 (403)
Q Consensus 203 ~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~------~~l~~L~~L~Ls~n~l~~~~p~~ 272 (403)
.+.+|+.||++.|-++.. +...+..++.|..|.+..|-++.....++ ...++|..|-..+|.+.+.+-..
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~ 291 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILD 291 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeee
Confidence 367888888888887732 33445566778888888887764333222 12467788888888765432211
Q ss_pred c-------cCCCCCCEEeCcCCcCc
Q 015620 273 L-------TSLKYLSVLNLSYNQFE 290 (403)
Q Consensus 273 ~-------~~l~~L~~L~L~~N~l~ 290 (403)
+ ..++-|..|.+.+|.+.
T Consensus 292 ~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 292 ISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred echhhhhhcccHHHHHHHHccCcch
Confidence 1 23455555666666665
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.94 E-value=3.5e-06 Score=84.72 Aligned_cols=119 Identities=21% Similarity=0.256 Sum_probs=81.0
Q ss_pred CCCCEEECcCCcCcc-cCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCc-CCChhccCCCCCcEE
Q 015620 39 LTHKVLDMRMNNFNG-KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVL 116 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L 116 (403)
|.|+.|.+++-.+.. .+-....++++|..||+++++++. + ..++++++|++|.+.+=.+.. ..-..+..|++|++|
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 566777777765542 222334578899999999999883 4 678889999999888766654 112356789999999
Q ss_pred EcccccccCcC--CCCC--CccCCCCccEEEccCCccccccchhhhh
Q 015620 117 ILRSNRFWGPI--GENT--TIVPFPSLRIIDLSHNEFTGVLLTGYLD 159 (403)
Q Consensus 117 ~l~~n~l~~~~--~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 159 (403)
|+|..+..... .... ....+|+|+.||.|++.+.....+.+..
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence 99987653321 1100 0145899999999999888766555444
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.85 E-value=2.9e-05 Score=64.18 Aligned_cols=107 Identities=24% Similarity=0.249 Sum_probs=78.9
Q ss_pred CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCC-hhccCCCCCcEEEc
Q 015620 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLIL 118 (403)
Q Consensus 40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l 118 (403)
+...+||++|.+. .+ +.|..++.|.+|.+++|+|+..-|.--.-+++|+.|.+.+|.|..... +-+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 4477999999986 33 367788999999999999996555444456789999999999875321 23567899999999
Q ss_pred ccccccCcCCC-CCCccCCCCccEEEccCCc
Q 015620 119 RSNRFWGPIGE-NTTIVPFPSLRIIDLSHNE 148 (403)
Q Consensus 119 ~~n~l~~~~~~-~~~~~~l~~L~~L~l~~n~ 148 (403)
-+|..+..--- ...+..+|+|+.||+..-.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 99987543221 1134678999999987643
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.74 E-value=1.5e-05 Score=80.22 Aligned_cols=119 Identities=22% Similarity=0.228 Sum_probs=88.5
Q ss_pred CCccEEECCCCCCCCcCC-----CCCCCCCeEeCCCC--------------CCCCEEECcCCcCcccCCccccCCCCcCE
Q 015620 7 ATLYYLDLSNNFLTNIEY-----FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~-----~~~~~L~~L~l~~n--------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 67 (403)
.+|++||+++...-.... ..++.|+.|.+.+- ++|..||+|+++++.. ..+..+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 468889998865443221 67888998888873 8999999999999844 67789999999
Q ss_pred EEccCCcCcC-CCCccccCCCCCCEEEccCCcCCcCC--C----hhccCCCCCcEEEcccccccCcC
Q 015620 68 LNLNGNRLEG-PLPPSLVNCHHLEVLNVGNNQINDNF--P----NWLEILPELQVLILRSNRFWGPI 127 (403)
Q Consensus 68 L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~--p----~~~~~l~~L~~L~l~~n~l~~~~ 127 (403)
|.+.+=.+.. ..-..+.+|++|++||+|........ . +.-..||+|+.||.+++.+.+.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 9998877662 12235678999999999987655421 1 11235899999999998875543
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.69 E-value=7.4e-05 Score=61.80 Aligned_cols=83 Identities=24% Similarity=0.229 Sum_probs=64.8
Q ss_pred CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCC--ccccCCCCCCEEEccCCcCCcCCC---hhccCCCCC
Q 015620 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLP--PSLVNCHHLEVLNVGNNQINDNFP---NWLEILPEL 113 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~~~~p---~~~~~l~~L 113 (403)
+.|.+|.+.+|.|+..-|.--.-+++|+.|.|.+|.|. .+. +-+..+++|+.|.+-+|.++..-- -.+..+++|
T Consensus 64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l 142 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSL 142 (233)
T ss_pred cccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcc
Confidence 56699999999999666655556788999999999988 332 236789999999999999875321 246789999
Q ss_pred cEEEccccc
Q 015620 114 QVLILRSNR 122 (403)
Q Consensus 114 ~~L~l~~n~ 122 (403)
++||..+-.
T Consensus 143 ~~LDF~kVt 151 (233)
T KOG1644|consen 143 RTLDFQKVT 151 (233)
T ss_pred eEeehhhhh
Confidence 999987654
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.00025 Score=66.23 Aligned_cols=139 Identities=15% Similarity=0.191 Sum_probs=83.6
Q ss_pred ccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCC
Q 015620 59 FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPS 138 (403)
Q Consensus 59 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 138 (403)
+..+.+++.|++++|.++ .+|. + -.+|+.|.++++.--..+|+.+ ..+|+.|.+++|.....+| ++
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP--------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP--------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc--------cc
Confidence 345788899999998888 5662 2 2468899988754434466544 2578888888873222233 34
Q ss_pred ccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCccc
Q 015620 139 LRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQ 218 (403)
Q Consensus 139 L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 218 (403)
|+.|+++.+..... . ..+++|+.|.+.+++..
T Consensus 114 Le~L~L~~n~~~~L------~------------------------------------------~LPssLk~L~I~~~n~~ 145 (426)
T PRK15386 114 VRSLEIKGSATDSI------K------------------------------------------NVPNGLTSLSINSYNPE 145 (426)
T ss_pred cceEEeCCCCCccc------c------------------------------------------cCcchHhheeccccccc
Confidence 67777765543311 0 01345666666443211
Q ss_pred --ccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCc
Q 015620 219 --GGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNM 264 (403)
Q Consensus 219 --~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 264 (403)
..+|.. -.++|++|++++|... ..|..+. .+|+.|+++.+.
T Consensus 146 ~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 146 NQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred cccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 011211 1257999999998866 4454443 589999998764
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.25 E-value=0.00019 Score=61.83 Aligned_cols=94 Identities=20% Similarity=0.238 Sum_probs=61.6
Q ss_pred cCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCC--cCCcCCChhccCCCCCcEEEcccccccCcCCCCC
Q 015620 54 KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN--QINDNFPNWLEILPELQVLILRSNRFWGPIGENT 131 (403)
Q Consensus 54 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~ 131 (403)
.+....-.+..|+.|++.+..++. + ..|-.|++|+.|+++.| ++.+.++.....+++|+++++++|++.. +..+
T Consensus 34 ~~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl 109 (260)
T KOG2739|consen 34 KLGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTL 109 (260)
T ss_pred Ccccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--cccc
Confidence 344455556677777777777662 2 23556778888888888 6665555555566888888888888742 2222
Q ss_pred -CccCCCCccEEEccCCcccc
Q 015620 132 -TIVPFPSLRIIDLSHNEFTG 151 (403)
Q Consensus 132 -~~~~l~~L~~L~l~~n~l~~ 151 (403)
....+.+|..||+.+|..+.
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcchhhhhcccCCccc
Confidence 22456677788888876654
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=1.5e-05 Score=68.92 Aligned_cols=89 Identities=29% Similarity=0.297 Sum_probs=59.4
Q ss_pred CCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccE
Q 015620 62 SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRI 141 (403)
Q Consensus 62 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 141 (403)
+.+.++|++-++.++ .+ .....|+.|++|.|+-|+|+..-| +..+++|++|+|..|.+. .+.+-..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~-DI-sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI-SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCcc-HH-HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 445667777777776 33 234567778888888888776533 667777888888887763 3444334577788888
Q ss_pred EEccCCccccccch
Q 015620 142 IDLSHNEFTGVLLT 155 (403)
Q Consensus 142 L~l~~n~l~~~~~~ 155 (403)
|-|..|...+..+.
T Consensus 93 LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQ 106 (388)
T ss_pred HhhccCCcccccch
Confidence 87777777665543
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.97 E-value=0.00041 Score=59.83 Aligned_cols=101 Identities=26% Similarity=0.294 Sum_probs=66.7
Q ss_pred CEEECcCCcCcccCCccccCCCCcCEEEccCC--cCcCCCCccccCCCCCCEEEccCCcCCcCCChh---ccCCCCCcEE
Q 015620 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN--RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNW---LEILPELQVL 116 (403)
Q Consensus 42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~---~~~l~~L~~L 116 (403)
+.|++.+..++.. ..|-.+++|++|.++.| ++.+.++.-...+++|++|++++|+|.. +.. +..+.+|..|
T Consensus 46 e~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 46 ELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSL 121 (260)
T ss_pred hhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhh
Confidence 4555555555421 23456789999999999 7776666666677999999999999874 233 4466778888
Q ss_pred EcccccccCcCC-CCCCccCCCCccEEEccC
Q 015620 117 ILRSNRFWGPIG-ENTTIVPFPSLRIIDLSH 146 (403)
Q Consensus 117 ~l~~n~l~~~~~-~~~~~~~l~~L~~L~l~~ 146 (403)
++.+|.-+..-. ....|.-+++|++||-..
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhccccccc
Confidence 888887544111 011235578888876543
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.83 E-value=0.0058 Score=47.98 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=49.7
Q ss_pred CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015620 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 118 (403)
++|+.+.+.. .+...-...|.++.+|+.+.+.++ +...-..+|.++++++.+.+.+ .+.......|..+++|+.+++
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 3446666654 444444566777777888877764 5544445677777788887765 444444556666777877777
Q ss_pred ccccccCcCCCCCCccCCCCccEEEccC
Q 015620 119 RSNRFWGPIGENTTIVPFPSLRIIDLSH 146 (403)
Q Consensus 119 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 146 (403)
..+ +....... +.+. +|+.+.+..
T Consensus 89 ~~~-~~~i~~~~--f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 89 PSN-ITEIGSSS--FSNC-NLKEINIPS 112 (129)
T ss_dssp TTT--BEEHTTT--TTT--T--EEE-TT
T ss_pred Ccc-ccEEchhh--hcCC-CceEEEECC
Confidence 654 32222222 2444 677776654
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.62 E-value=0.0051 Score=48.29 Aligned_cols=103 Identities=18% Similarity=0.229 Sum_probs=61.1
Q ss_pred CCCCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCcccc
Q 015620 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 84 (403)
++++|+.+.+.. .+..+....+.+...| +.+++.++ +...-..+|.++.+|+.+.+.+ .+.......|.
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l--------~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSL--------KSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT---------SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccc--------cccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 445777888764 5665555555555444 88888775 6645566788888999999976 44434556788
Q ss_pred CCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015620 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (403)
Q Consensus 85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 120 (403)
++++|+.+++..+ +.......|... +|+.+.+..
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 8999999999876 666556778887 999998876
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.56 E-value=4.7e-05 Score=69.64 Aligned_cols=84 Identities=23% Similarity=0.245 Sum_probs=36.6
Q ss_pred cccceEEEcccCccc--ccCCcccCCCCCCCEEEecCCCCCCCc-----CccccCCCCCCEEeccCCcCC-CCCCccccC
Q 015620 204 LTIFMTIDLSSNKFQ--GGIPEVVGKLNLLKGLNISHNNLTGDI-----PSSLRNLTEVESLDLSSNMLV-GHIPTQLTS 275 (403)
Q Consensus 204 ~~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~ 275 (403)
.+.|+.+++.+.... +.+..--.+++.|+.|.|+++...... ...-..+..|+.+.|+++... +..-..+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 344555555544322 111222234455666666655432111 111233455566666665432 223334455
Q ss_pred CCCCCEEeCcCC
Q 015620 276 LKYLSVLNLSYN 287 (403)
Q Consensus 276 l~~L~~L~L~~N 287 (403)
++.|+.+++-.+
T Consensus 425 c~~Leri~l~~~ 436 (483)
T KOG4341|consen 425 CRNLERIELIDC 436 (483)
T ss_pred Ccccceeeeech
Confidence 555555555444
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.00024 Score=61.79 Aligned_cols=74 Identities=22% Similarity=0.233 Sum_probs=54.4
Q ss_pred CCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhh
Q 015620 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (403)
Q Consensus 85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 164 (403)
.+.+.+.|++.++.++.+ ....+|+.|++|.|+-|+++...|- ..+++|++|+|..|.|........+.+++.|
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl----~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPL----QRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhH----HHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 356778889999998863 3456899999999999998654442 6788999999999998765443444443333
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.96 E-value=0.0026 Score=32.85 Aligned_cols=17 Identities=41% Similarity=0.718 Sum_probs=7.6
Q ss_pred CEEECcCCcCcccCCccc
Q 015620 42 KVLDMRMNNFNGKIPRKF 59 (403)
Q Consensus 42 ~~L~Ls~n~l~~~~p~~~ 59 (403)
++||+++|.++ .+|..|
T Consensus 3 ~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 3 EYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp SEEEETSSEES-EEGTTT
T ss_pred cEEECCCCcCE-eCChhh
Confidence 44444444444 344333
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.89 E-value=0.003 Score=32.58 Aligned_cols=19 Identities=42% Similarity=0.739 Sum_probs=9.8
Q ss_pred cCEEEccCCcCcCCCCcccc
Q 015620 65 LTSLNLNGNRLEGPLPPSLV 84 (403)
Q Consensus 65 L~~L~L~~n~l~~~~p~~~~ 84 (403)
|++|++++|+++ .+|+.|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444443
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.72 E-value=0.0012 Score=56.06 Aligned_cols=88 Identities=20% Similarity=0.167 Sum_probs=46.8
Q ss_pred cccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCC
Q 015620 58 KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFP 137 (403)
Q Consensus 58 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 137 (403)
.+..+...+.||++.|++. .+-..|+-++.|..||++.|.+.- .|..+..+..++.+++.+|.. +..|.+. +..+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~-~~~p~s~--~k~~ 111 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNH-SQQPKSQ--KKEP 111 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccch-hhCCccc--cccC
Confidence 3444555555666555555 333445555555556666555544 555555555555555555555 2334433 5555
Q ss_pred CccEEEccCCccc
Q 015620 138 SLRIIDLSHNEFT 150 (403)
Q Consensus 138 ~L~~L~l~~n~l~ 150 (403)
.++++++-.|.++
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 5666555555543
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.10 E-value=0.00036 Score=67.40 Aligned_cols=110 Identities=21% Similarity=0.195 Sum_probs=55.9
Q ss_pred CCEEECcCCcCcccCC----ccccCCCCcCEEEccCCcCcCCCC----ccccCC-CCCCEEEccCCcCCcC----CChhc
Q 015620 41 HKVLDMRMNNFNGKIP----RKFVKSCNLTSLNLNGNRLEGPLP----PSLVNC-HHLEVLNVGNNQINDN----FPNWL 107 (403)
Q Consensus 41 L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l-~~L~~L~l~~n~l~~~----~p~~~ 107 (403)
+..|+|.+|.+..... ..+.....|+.|++++|.+...-- ..+... ..++.|++..|.++.. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4566666666664322 234456667777777777663211 112222 4455666666666542 23344
Q ss_pred cCCCCCcEEEcccccccCc----CCCCC--CccCCCCccEEEccCCccc
Q 015620 108 EILPELQVLILRSNRFWGP----IGENT--TIVPFPSLRIIDLSHNEFT 150 (403)
Q Consensus 108 ~~l~~L~~L~l~~n~l~~~----~~~~~--~~~~l~~L~~L~l~~n~l~ 150 (403)
.....++.++++.|.+... ++... .+....++++|.++++.++
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 4556666777777665210 01111 0013445666666666655
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.85 E-value=0.00028 Score=68.12 Aligned_cols=186 Identities=26% Similarity=0.283 Sum_probs=106.1
Q ss_pred ccEEECCCCCCCCcCC----CCCCCCCeEeCCCCCCCCEEECcCCcCcccCC----ccccCC-CCcCEEEccCCcCcCC-
Q 015620 9 LYYLDLSNNFLTNIEY----FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIP----RKFVKS-CNLTSLNLNGNRLEGP- 78 (403)
Q Consensus 9 L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p----~~~~~l-~~L~~L~L~~n~l~~~- 78 (403)
+..++|.+|.+..-.. ..+..+ .+|..|+++.|++.+.-- ..+... +.+++|++..|.++..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~--------~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g 160 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTL--------PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG 160 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhccc--------ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc
Confidence 5556666666654432 112222 455888888888874322 222232 5677788888888743
Q ss_pred ---CCccccCCCCCCEEEccCCcCCc----CCChhcc----CCCCCcEEEcccccccCcCCCCC--CccCCCC-ccEEEc
Q 015620 79 ---LPPSLVNCHHLEVLNVGNNQIND----NFPNWLE----ILPELQVLILRSNRFWGPIGENT--TIVPFPS-LRIIDL 144 (403)
Q Consensus 79 ---~p~~~~~l~~L~~L~l~~n~l~~----~~p~~~~----~l~~L~~L~l~~n~l~~~~~~~~--~~~~l~~-L~~L~l 144 (403)
+.+.+.....++.+|++.|.+.. .++..+. ...++++|.++++.++....... .+...+. +..+++
T Consensus 161 ~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l 240 (478)
T KOG4308|consen 161 AAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDL 240 (478)
T ss_pred hHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHH
Confidence 34455667888889999888742 1223333 35678899999887753221111 1133344 666888
Q ss_pred cCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhc-ccceEEEcccCccccc---
Q 015620 145 SHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERIL-TIFMTIDLSSNKFQGG--- 220 (403)
Q Consensus 145 ~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~--- 220 (403)
..|.+.+....... +.+. .+ ..++.++++.|.++..
T Consensus 241 ~~n~l~d~g~~~L~---~~l~-------------------------------------~~~~~l~~l~l~~nsi~~~~~~ 280 (478)
T KOG4308|consen 241 ASNKLGDVGVEKLL---PCLS-------------------------------------VLSETLRVLDLSRNSITEKGVR 280 (478)
T ss_pred HhcCcchHHHHHHH---HHhc-------------------------------------ccchhhhhhhhhcCCccccchH
Confidence 88877644211111 1110 02 4566777777777643
Q ss_pred -CCcccCCCCCCCEEEecCCCCC
Q 015620 221 -IPEVVGKLNLLKGLNISHNNLT 242 (403)
Q Consensus 221 -~p~~~~~l~~L~~L~L~~n~l~ 242 (403)
.+..+..+++++.+.++.|.+.
T Consensus 281 ~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 281 DLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHhhhHHHHHhhcccCccc
Confidence 2334455567777777777665
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.82 E-value=0.011 Score=57.89 Aligned_cols=111 Identities=24% Similarity=0.159 Sum_probs=58.9
Q ss_pred CCCCEEECcCCcCccc--CCccccCCCCcCEEEccCC-cCcCCCC----ccccCCCCCCEEEccCCc-CCcCCChhcc-C
Q 015620 39 LTHKVLDMRMNNFNGK--IPRKFVKSCNLTSLNLNGN-RLEGPLP----PSLVNCHHLEVLNVGNNQ-INDNFPNWLE-I 109 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~n-~l~~~~p----~~~~~l~~L~~L~l~~n~-l~~~~p~~~~-~ 109 (403)
+.|+.|.+..+.-... .-.....+++|+.|+++++ ......+ .....+++|+.|+++.+. ++...-..+. .
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 4445555555422212 2233446778888888763 1111111 233456778888888777 5543323333 3
Q ss_pred CCCCcEEEccccc-ccCcCCCCCCccCCCCccEEEccCCccc
Q 015620 110 LPELQVLILRSNR-FWGPIGENTTIVPFPSLRIIDLSHNEFT 150 (403)
Q Consensus 110 l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 150 (403)
+++|+.|.+.++. +++.--.. ....+++|++|+++.+...
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~-i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVS-IAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHH-HHHhcCcccEEeeecCccc
Confidence 6788888866554 22211111 1145677888888876543
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.98 E-value=0.14 Score=27.40 Aligned_cols=13 Identities=46% Similarity=0.639 Sum_probs=6.2
Q ss_pred CCCEEeccCCcCC
Q 015620 254 EVESLDLSSNMLV 266 (403)
Q Consensus 254 ~L~~L~Ls~n~l~ 266 (403)
+|+.|+|++|+|.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.98 E-value=0.14 Score=27.40 Aligned_cols=13 Identities=46% Similarity=0.639 Sum_probs=6.2
Q ss_pred CCCEEeccCCcCC
Q 015620 254 EVESLDLSSNMLV 266 (403)
Q Consensus 254 ~L~~L~Ls~n~l~ 266 (403)
+|+.|+|++|+|.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.82 E-value=0.16 Score=27.20 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=7.7
Q ss_pred CCCCEEEccCCcCCc
Q 015620 87 HHLEVLNVGNNQIND 101 (403)
Q Consensus 87 ~~L~~L~l~~n~l~~ 101 (403)
++|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345555555555554
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.82 E-value=0.16 Score=27.20 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=7.7
Q ss_pred CCCCEEEccCCcCCc
Q 015620 87 HHLEVLNVGNNQIND 101 (403)
Q Consensus 87 ~~L~~L~l~~n~l~~ 101 (403)
++|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345555555555554
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.57 E-value=0.0032 Score=53.52 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=72.7
Q ss_pred CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015620 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 118 (403)
...+.||++.|.+. .+-..|..++.|..|+++.|.+. ..|..++.+..+..+++..|..+. .|.++...+.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchhhh
Confidence 45589999999887 55567778889999999999998 899999999999999999998876 8999999999999999
Q ss_pred cccccc
Q 015620 119 RSNRFW 124 (403)
Q Consensus 119 ~~n~l~ 124 (403)
.+|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 998763
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.70 E-value=0.035 Score=46.37 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=18.4
Q ss_pred CEEECcCCcCcccCCccccCCCCcCEEEccCCc
Q 015620 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74 (403)
Q Consensus 42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 74 (403)
+.+|-++..|..+--+.+.+++.++.|.+.+++
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 555666655555444555555555555555554
No 80
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.97 E-value=0.11 Score=48.25 Aligned_cols=128 Identities=17% Similarity=0.146 Sum_probs=70.8
Q ss_pred CCCCEEECcCCc-CcccCCccc-cCCCCcCEEEccCCcCcCC--CCccccCCCCCCEEEccCCcCCcCC-----ChhccC
Q 015620 39 LTHKVLDMRMNN-FNGKIPRKF-VKSCNLTSLNLNGNRLEGP--LPPSLVNCHHLEVLNVGNNQINDNF-----PNWLEI 109 (403)
Q Consensus 39 ~~L~~L~Ls~n~-l~~~~p~~~-~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~-----p~~~~~ 109 (403)
.+|++|.++.++ ++..--..+ .+.+.|+.|++..+..... +..--.+++.|+.|.++++....-. ...-..
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 455555665553 221111122 2567889998888765421 2222347889999999987643211 122245
Q ss_pred CCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCcc-ccccchhhhhhhhhhccc
Q 015620 110 LPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF-TGVLLTGYLDNFKAMMHG 167 (403)
Q Consensus 110 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~~ 167 (403)
+..|+.+.+++++.+..-... .+...++|+.+++-++.- +......+...+++++..
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred ccccceeeecCCCCchHHHHH-HHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 678899999988763321111 124566888888877542 323333444455555443
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.61 E-value=0.065 Score=44.82 Aligned_cols=81 Identities=21% Similarity=0.120 Sum_probs=56.2
Q ss_pred cceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCC-CcCcccc-CCCCCCEEeccCC-cCCCCCCccccCCCCCCEE
Q 015620 206 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG-DIPSSLR-NLTEVESLDLSSN-MLVGHIPTQLTSLKYLSVL 282 (403)
Q Consensus 206 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~-~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L 282 (403)
.++.+|-++..+..+--+.+.+++.++.|.+.+|.--+ .-.+-++ -.++|+.|++++| +|+...-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 46778888888877777777888888888888775321 1111111 3478999999988 6876666677778888877
Q ss_pred eCcC
Q 015620 283 NLSY 286 (403)
Q Consensus 283 ~L~~ 286 (403)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7654
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.44 E-value=0.14 Score=26.77 Aligned_cols=14 Identities=50% Similarity=0.736 Sum_probs=5.4
Q ss_pred CCCCEEEccCCcCC
Q 015620 87 HHLEVLNVGNNQIN 100 (403)
Q Consensus 87 ~~L~~L~l~~n~l~ 100 (403)
++|++|++++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34444444444443
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.42 E-value=0.94 Score=24.31 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=8.8
Q ss_pred CCCCEEEccCCcCCc
Q 015620 87 HHLEVLNVGNNQIND 101 (403)
Q Consensus 87 ~~L~~L~l~~n~l~~ 101 (403)
++|+.|+++.|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456666666666544
No 84
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=80.56 E-value=6.1 Score=37.79 Aligned_cols=93 Identities=19% Similarity=0.122 Sum_probs=52.6
Q ss_pred CCccEEECCCCCCCCcCCCCCCC-CCeEeCCCC----------------CCCCEEECcCCcCcccCCccccC---CCCcC
Q 015620 7 ATLYYLDLSNNFLTNIEYFPPTN-MTQLNFDSN----------------LTHKVLDMRMNNFNGKIPRKFVK---SCNLT 66 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~-L~~L~l~~n----------------~~L~~L~Ls~n~l~~~~p~~~~~---l~~L~ 66 (403)
+.++++|++.|.+....|..+.. ---+.++.| ..+.++|++.|.....+|..... -.-++
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~ 244 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLF 244 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhh
Confidence 56788889988887766511110 111334433 56778888888777777755432 12456
Q ss_pred EEEccCCcCcC---CCCccccCCCCCCEEEccCCcC
Q 015620 67 SLNLNGNRLEG---PLPPSLVNCHHLEVLNVGNNQI 99 (403)
Q Consensus 67 ~L~L~~n~l~~---~~p~~~~~l~~L~~L~l~~n~l 99 (403)
.++.+...+.- .-+-.++.-+++...+++.|..
T Consensus 245 ~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 245 KLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccchhhcccccccccccccchhhhccCCC
Confidence 66666655441 1122233445677777766644
No 85
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=77.80 E-value=13 Score=35.75 Aligned_cols=66 Identities=20% Similarity=0.242 Sum_probs=32.9
Q ss_pred CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccc---cCCCCCCEEEccCCcCCcCCChh
Q 015620 39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL---VNCHHLEVLNVGNNQINDNFPNW 106 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~l~~n~l~~~~p~~ 106 (403)
+.++++|++.|.+....|-.+..=. --+.++.+.++...-..+ .+-..+.+++++.|.....+|..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~ 233 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRT 233 (553)
T ss_pred chhhhhccCCCcccccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhH
Confidence 6778889999988766554443210 014444444442111100 01123555666666655555543
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.44 E-value=1.8 Score=23.22 Aligned_cols=18 Identities=39% Similarity=0.551 Sum_probs=12.3
Q ss_pred CCCCEEeCcCCcCccCCCC
Q 015620 277 KYLSVLNLSYNQFEGPIPR 295 (403)
Q Consensus 277 ~~L~~L~L~~N~l~~~ip~ 295 (403)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35777788888776 5554
No 87
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=73.20 E-value=3.3 Score=24.74 Aligned_cols=7 Identities=14% Similarity=0.017 Sum_probs=2.7
Q ss_pred eeeeehe
Q 015620 350 FAKMGYG 356 (403)
Q Consensus 350 ~~~~~~~ 356 (403)
.+.+|++
T Consensus 12 aIa~~Vv 18 (40)
T PF08693_consen 12 AIAVGVV 18 (40)
T ss_pred EEEEEEE
Confidence 3333433
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.74 E-value=3.3 Score=22.52 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=5.7
Q ss_pred CCEEECcCCcCc
Q 015620 41 HKVLDMRMNNFN 52 (403)
Q Consensus 41 L~~L~Ls~n~l~ 52 (403)
|++|||++|.+.
T Consensus 4 L~~LdL~~N~i~ 15 (28)
T smart00368 4 LRELDLSNNKLG 15 (28)
T ss_pred cCEEECCCCCCC
Confidence 344455555443
No 89
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=70.89 E-value=1.9 Score=42.09 Aligned_cols=88 Identities=22% Similarity=0.064 Sum_probs=47.0
Q ss_pred hhcccceEEEcccC-cccccC----CcccCCCCCCCEEEecCCC-CCCCcCcccc-CCCCCCEEeccCCc-CCCCC-Ccc
Q 015620 202 RILTIFMTIDLSSN-KFQGGI----PEVVGKLNLLKGLNISHNN-LTGDIPSSLR-NLTEVESLDLSSNM-LVGHI-PTQ 272 (403)
Q Consensus 202 ~~~~~L~~L~Ls~n-~l~~~~----p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~-~l~~L~~L~Ls~n~-l~~~~-p~~ 272 (403)
...+.|+.|+++++ ...... ......+++|+.|+++++. ++...-..+. .+++|+.|.+.++. ++... -..
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 34667777777752 111111 1223345677777777776 4433222222 25677777766665 44332 233
Q ss_pred ccCCCCCCEEeCcCCcC
Q 015620 273 LTSLKYLSVLNLSYNQF 289 (403)
Q Consensus 273 ~~~l~~L~~L~L~~N~l 289 (403)
...++.|++|+++++..
T Consensus 291 ~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHG 307 (482)
T ss_pred HHhcCcccEEeeecCcc
Confidence 34566677777776644
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.30 E-value=1.9 Score=41.88 Aligned_cols=65 Identities=23% Similarity=0.201 Sum_probs=34.4
Q ss_pred CCCCcCEEEccCCcCcCCCC---ccccCCCCCCEEEccCCcCCcCCChhccC--CCCCcEEEcccccccCc
Q 015620 61 KSCNLTSLNLNGNRLEGPLP---PSLVNCHHLEVLNVGNNQINDNFPNWLEI--LPELQVLILRSNRFWGP 126 (403)
Q Consensus 61 ~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~l~~n~l~~~~p~~~~~--l~~L~~L~l~~n~l~~~ 126 (403)
+.+.+..++|++|++- .+. .--..-++|+.|+|++|...-....++.+ ...|++|-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 4556667777777765 221 11123467777777777221111223332 24566777777776544
No 91
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=62.51 E-value=6.3 Score=26.35 Aligned_cols=16 Identities=19% Similarity=0.521 Sum_probs=11.2
Q ss_pred heeehhhhhhhHHHHh
Q 015620 355 YGSGLVIGLSVGYMVF 370 (403)
Q Consensus 355 ~~~~~~~~~~~~~~~~ 370 (403)
+++++++|+++|+++.
T Consensus 3 iilali~G~~~Gff~a 18 (64)
T PF03672_consen 3 IILALIVGAVIGFFIA 18 (64)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566777777777765
No 92
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=53.35 E-value=4.4 Score=26.96 Aligned_cols=10 Identities=30% Similarity=0.501 Sum_probs=0.0
Q ss_pred eheeehhhhh
Q 015620 354 GYGSGLVIGL 363 (403)
Q Consensus 354 ~~~~~~~~~~ 363 (403)
|+++|+++++
T Consensus 17 G~Vvgll~ai 26 (64)
T PF01034_consen 17 GGVVGLLFAI 26 (64)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3334444333
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.20 E-value=9.3 Score=37.33 Aligned_cols=62 Identities=26% Similarity=0.320 Sum_probs=31.1
Q ss_pred cccceEEEcccCccccc--CCcccCCCCCCCEEEecCC--CCCCCcCccccC--CCCCCEEeccCCcCCC
Q 015620 204 LTIFMTIDLSSNKFQGG--IPEVVGKLNLLKGLNISHN--NLTGDIPSSLRN--LTEVESLDLSSNMLVG 267 (403)
Q Consensus 204 ~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~--l~~L~~L~Ls~n~l~~ 267 (403)
.+.+..+.|++|++... +...-...|+|+.|+|++| .+. ...++.. ...|+.|-+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCcccc
Confidence 45566677777766521 1111223466677777776 222 1111221 2345666666776643
No 94
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=45.82 E-value=25 Score=29.32 Aligned_cols=10 Identities=40% Similarity=0.773 Sum_probs=4.1
Q ss_pred CCCCCCCCCC
Q 015620 313 LCGFPLLESC 322 (403)
Q Consensus 313 lc~~~~~~~C 322 (403)
-||.=..+.|
T Consensus 29 CCG~C~~ryC 38 (179)
T PF13908_consen 29 CCGTCSLRYC 38 (179)
T ss_pred ecCCccCcch
Confidence 3444333333
No 95
>PRK01844 hypothetical protein; Provisional
Probab=45.22 E-value=19 Score=24.71 Aligned_cols=23 Identities=17% Similarity=0.673 Sum_probs=14.4
Q ss_pred eehhhhhhhHHHHhcCCchhHHHHHHH
Q 015620 357 SGLVIGLSVGYMVFGTGKPRWLVRMIE 383 (403)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~w~~~~~~ 383 (403)
+++++|+++|+++. |+|+.+.+.
T Consensus 12 ~~li~G~~~Gff~a----rk~~~k~lk 34 (72)
T PRK01844 12 VALVAGVALGFFIA----RKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHH
Confidence 56777777777665 455555554
No 96
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=44.98 E-value=6.8 Score=27.53 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=14.5
Q ss_pred eeeeeeeheeehhhhhhhHHHHhc
Q 015620 348 WKFAKMGYGSGLVIGLSVGYMVFG 371 (403)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~ 371 (403)
|.+++++.+++++++.++..++++
T Consensus 16 ~yyiiA~gga~llL~~v~l~vvL~ 39 (87)
T PF11980_consen 16 WYYIIAMGGALLLLVAVCLGVVLY 39 (87)
T ss_pred eeHHHhhccHHHHHHHHHHHHHHh
Confidence 666666666666666665444443
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=42.34 E-value=16 Score=42.94 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=26.5
Q ss_pred EecCCCCCCCcCccccCCCCCCEEeccCCcCCC
Q 015620 235 NISHNNLTGDIPSSLRNLTEVESLDLSSNMLVG 267 (403)
Q Consensus 235 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 267 (403)
||++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 578888886666778888889999998887763
No 98
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=41.82 E-value=9.4 Score=27.95 Aligned_cols=20 Identities=10% Similarity=0.218 Sum_probs=12.5
Q ss_pred hcCCchhHHHHHHHhhcccE
Q 015620 370 FGTGKPRWLVRMIEKYQSNK 389 (403)
Q Consensus 370 ~~~~~~~w~~~~~~~~~~~~ 389 (403)
+..+++.||.-+....+++.
T Consensus 36 laaKC~~~~k~~~SY~H~rL 55 (102)
T PF15176_consen 36 LAAKCPVWYKYLASYRHHRL 55 (102)
T ss_pred HHHHhHHHHHHHhccccccC
Confidence 33467888866666555554
No 99
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=37.86 E-value=18 Score=21.28 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=4.7
Q ss_pred eheeehhhhhh
Q 015620 354 GYGSGLVIGLS 364 (403)
Q Consensus 354 ~~~~~~~~~~~ 364 (403)
++.+++++|++
T Consensus 7 aIIv~V~vg~~ 17 (38)
T PF02439_consen 7 AIIVAVVVGMA 17 (38)
T ss_pred hHHHHHHHHHH
Confidence 33444444443
No 100
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=35.26 E-value=12 Score=28.01 Aligned_cols=7 Identities=14% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHh
Q 015620 378 LVRMIEK 384 (403)
Q Consensus 378 ~~~~~~~ 384 (403)
|+.+.+|
T Consensus 53 Yk~L~~k 59 (118)
T PF14991_consen 53 YKTLRDK 59 (118)
T ss_dssp -------
T ss_pred hhhhhhc
Confidence 5555444
No 101
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=34.02 E-value=24 Score=25.94 Aligned_cols=6 Identities=17% Similarity=0.285 Sum_probs=2.5
Q ss_pred eeheee
Q 015620 353 MGYGSG 358 (403)
Q Consensus 353 ~~~~~~ 358 (403)
+|++++
T Consensus 69 agi~vg 74 (96)
T PTZ00382 69 AGISVA 74 (96)
T ss_pred EEEEee
Confidence 344444
No 102
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=33.93 E-value=5.7 Score=30.61 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=5.7
Q ss_pred eeheeehhhhhh
Q 015620 353 MGYGSGLVIGLS 364 (403)
Q Consensus 353 ~~~~~~~~~~~~ 364 (403)
+++++|+++|++
T Consensus 67 ~~Ii~gv~aGvI 78 (122)
T PF01102_consen 67 IGIIFGVMAGVI 78 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred eehhHHHHHHHH
Confidence 344455555543
No 103
>PF15102 TMEM154: TMEM154 protein family
Probab=33.35 E-value=19 Score=28.59 Aligned_cols=7 Identities=0% Similarity=-0.201 Sum_probs=3.0
Q ss_pred eeeeeee
Q 015620 348 WKFAKMG 354 (403)
Q Consensus 348 ~~~~~~~ 354 (403)
..++++.
T Consensus 58 iLmIlIP 64 (146)
T PF15102_consen 58 ILMILIP 64 (146)
T ss_pred EEEEeHH
Confidence 3344444
No 104
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.32 E-value=15 Score=28.78 Aligned_cols=15 Identities=40% Similarity=0.857 Sum_probs=8.6
Q ss_pred eehhhhhhhHHHHhc
Q 015620 357 SGLVIGLSVGYMVFG 371 (403)
Q Consensus 357 ~~~~~~~~~~~~~~~ 371 (403)
+++++|++||+++.+
T Consensus 4 i~lvvG~iiG~~~~r 18 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGR 18 (128)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566666666554
No 105
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=32.93 E-value=17 Score=29.03 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=12.7
Q ss_pred eeeeeheeehhhhhhhHHH
Q 015620 350 FAKMGYGSGLVIGLSVGYM 368 (403)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~ 368 (403)
.+++|+++|+.+.+++++.
T Consensus 49 nIVIGvVVGVGg~ill~il 67 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGIL 67 (154)
T ss_pred cEEEEEEecccHHHHHHHH
Confidence 4567888887777765543
No 106
>PRK00523 hypothetical protein; Provisional
Probab=32.89 E-value=14 Score=25.31 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=13.2
Q ss_pred eehhhhhhhHHHHhcCCchhHHHHHHH
Q 015620 357 SGLVIGLSVGYMVFGTGKPRWLVRMIE 383 (403)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~w~~~~~~ 383 (403)
+++++|+++++++- |+++.+.+.
T Consensus 13 ~~li~G~~~Gffia----rk~~~k~l~ 35 (72)
T PRK00523 13 PLLIVGGIIGYFVS----KKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHH
Confidence 44667776666665 455555444
No 107
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=32.84 E-value=34 Score=17.93 Aligned_cols=13 Identities=31% Similarity=0.130 Sum_probs=9.6
Q ss_pred CCCCCEEeCcCCc
Q 015620 276 LKYLSVLNLSYNQ 288 (403)
Q Consensus 276 l~~L~~L~L~~N~ 288 (403)
+++|++|+++++.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4678888888874
No 108
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=32.28 E-value=5.7 Score=36.40 Aligned_cols=9 Identities=11% Similarity=-0.031 Sum_probs=4.1
Q ss_pred eeeeeeehe
Q 015620 348 WKFAKMGYG 356 (403)
Q Consensus 348 ~~~~~~~~~ 356 (403)
...|++|++
T Consensus 272 ~vPIaVG~~ 280 (306)
T PF01299_consen 272 LVPIAVGAA 280 (306)
T ss_pred hHHHHHHHH
Confidence 334445544
No 109
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=31.53 E-value=66 Score=19.27 Aligned_cols=6 Identities=33% Similarity=1.066 Sum_probs=3.3
Q ss_pred hhHHHH
Q 015620 375 PRWLVR 380 (403)
Q Consensus 375 ~~w~~~ 380 (403)
|+|..|
T Consensus 31 RKw~aR 36 (43)
T PF08114_consen 31 RKWQAR 36 (43)
T ss_pred HHHHHH
Confidence 567544
No 110
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.83 E-value=33 Score=40.56 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=28.6
Q ss_pred EccCCcCcCCCCccccCCCCCCEEEccCCcCCc
Q 015620 69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND 101 (403)
Q Consensus 69 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 101 (403)
+|++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 588999996666778899999999999998875
No 111
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.77 E-value=7.7 Score=29.92 Aligned_cols=21 Identities=10% Similarity=-0.138 Sum_probs=11.5
Q ss_pred eeeeeeeheeehhhhhhhHHH
Q 015620 348 WKFAKMGYGSGLVIGLSVGYM 368 (403)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~ 368 (403)
...|.+|+++|++..++++++
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISY 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHH
Confidence 445666766666555443333
No 112
>PF15050 SCIMP: SCIMP protein
Probab=29.44 E-value=15 Score=27.80 Aligned_cols=15 Identities=7% Similarity=0.474 Sum_probs=9.0
Q ss_pred eehhhhhhhHHHHhc
Q 015620 357 SGLVIGLSVGYMVFG 371 (403)
Q Consensus 357 ~~~~~~~~~~~~~~~ 371 (403)
+.+++++++|+++||
T Consensus 15 aII~vS~~lglIlyC 29 (133)
T PF15050_consen 15 AIILVSVVLGLILYC 29 (133)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355566666666664
No 113
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.76 E-value=21 Score=27.45 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=11.8
Q ss_pred heeehhhhhhhHHHHhc
Q 015620 355 YGSGLVIGLSVGYMVFG 371 (403)
Q Consensus 355 ~~~~~~~~~~~~~~~~~ 371 (403)
+++|+|+|++||+++.+
T Consensus 11 a~igLvvGi~IG~li~R 27 (138)
T COG3105 11 ALIGLVVGIIIGALIAR 27 (138)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45667777777777765
No 114
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=27.83 E-value=25 Score=28.22 Aligned_cols=33 Identities=15% Similarity=0.280 Sum_probs=19.8
Q ss_pred eheeehhhhhhhHHHHhcCCchhH---HHHHHHhhc
Q 015620 354 GYGSGLVIGLSVGYMVFGTGKPRW---LVRMIEKYQ 386 (403)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~w---~~~~~~~~~ 386 (403)
++++|++...++|++++.-++||- |+|-+++.+
T Consensus 10 ~~~ag~a~~~flgYciYFD~KRR~dPdFRkkLr~rr 45 (148)
T TIGR00985 10 VIAAGIAAAAFLGYAIYFDYKRRNDPDFRKKLRRRR 45 (148)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 445565666678888876444443 666665544
No 115
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=26.71 E-value=44 Score=20.96 Aligned_cols=14 Identities=14% Similarity=0.482 Sum_probs=10.9
Q ss_pred hhHHHHHHHhhccc
Q 015620 375 PRWLVRMIEKYQSN 388 (403)
Q Consensus 375 ~~w~~~~~~~~~~~ 388 (403)
..||++|++..+..
T Consensus 29 ~dWYk~MfkqiHk~ 42 (50)
T smart00459 29 KDWYRTMFKQIHRK 42 (50)
T ss_pred HHHHHHHHHHHHcc
Confidence 44999999987654
No 116
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=26.64 E-value=22 Score=27.49 Aligned_cols=28 Identities=18% Similarity=0.346 Sum_probs=0.0
Q ss_pred eehhhhhhhHHHHhcCCchhH---HHHHHHh
Q 015620 357 SGLVIGLSVGYMVFGTGKPRW---LVRMIEK 384 (403)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~w---~~~~~~~ 384 (403)
+|+..+.++|++++.-++||- |+|-+.+
T Consensus 3 ag~a~~~~lgYciYFD~KRR~dP~frkkL~~ 33 (121)
T PF02064_consen 3 AGVAAAAFLGYCIYFDYKRRSDPDFRKKLRE 33 (121)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHhhcccccccChHHHHHHHH
Confidence 344445567788876444443 4444443
No 117
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=25.97 E-value=61 Score=22.94 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=12.0
Q ss_pred CchhHHHHHHHhhccc
Q 015620 373 GKPRWLVRMIEKYQSN 388 (403)
Q Consensus 373 ~~~~w~~~~~~~~~~~ 388 (403)
..|-|+.|.++|++++
T Consensus 70 aDRYwWvkh~DkRcrr 85 (89)
T PF10762_consen 70 ADRYWWVKHFDKRCRR 85 (89)
T ss_pred hhhHHHHHhhhHhhcc
Confidence 3467888899987765
No 118
>PF14986 DUF4514: Domain of unknown function (DUF4514)
Probab=24.84 E-value=46 Score=21.13 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=14.6
Q ss_pred ccceeeeeeeheeehhhhhhhHHH
Q 015620 345 WFDWKFAKMGYGSGLVIGLSVGYM 368 (403)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~ 368 (403)
+...+|.++|.+.|+.+.......
T Consensus 17 eid~KYa~IGtalGvaisAgFLaL 40 (61)
T PF14986_consen 17 EIDIKYAIIGTALGVAISAGFLAL 40 (61)
T ss_pred eeeeeeeeehhHHHHHHHHHHHHH
Confidence 445678777777766665543333
No 119
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=24.82 E-value=24 Score=27.08 Aligned_cols=13 Identities=38% Similarity=0.823 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHhc
Q 015620 359 LVIGLSVGYMVFG 371 (403)
Q Consensus 359 ~~~~~~~~~~~~~ 371 (403)
+|++++.++++++
T Consensus 90 lVl~llsg~lv~r 102 (129)
T PF12191_consen 90 LVLALLSGFLVWR 102 (129)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHh
Confidence 3333333444443
No 120
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.52 E-value=26 Score=23.78 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=12.2
Q ss_pred eeheeehhhhhhhHHHHh
Q 015620 353 MGYGSGLVIGLSVGYMVF 370 (403)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~ 370 (403)
++++.++++|++.|+++.
T Consensus 8 l~ivl~ll~G~~~G~fia 25 (71)
T COG3763 8 LLIVLALLAGLIGGFFIA 25 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456677777777776655
No 121
>PRK11677 hypothetical protein; Provisional
Probab=24.46 E-value=11 Score=29.63 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=10.3
Q ss_pred eeehhhhhhhHHHHhc
Q 015620 356 GSGLVIGLSVGYMVFG 371 (403)
Q Consensus 356 ~~~~~~~~~~~~~~~~ 371 (403)
++++++|+++|+++.+
T Consensus 7 ~i~livG~iiG~~~~R 22 (134)
T PRK11677 7 LIGLVVGIIIGAVAMR 22 (134)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4566666666666654
No 122
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=23.33 E-value=24 Score=24.63 Aligned_cols=8 Identities=25% Similarity=0.297 Sum_probs=3.0
Q ss_pred eeehhhhh
Q 015620 356 GSGLVIGL 363 (403)
Q Consensus 356 ~~~~~~~~ 363 (403)
++|+++.+
T Consensus 7 ~~g~~~ll 14 (75)
T PF14575_consen 7 IVGVLLLL 14 (75)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33433333
No 123
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=22.89 E-value=60 Score=19.93 Aligned_cols=16 Identities=13% Similarity=0.385 Sum_probs=12.2
Q ss_pred CCchhHHHHHHHhhcc
Q 015620 372 TGKPRWLVRMIEKYQS 387 (403)
Q Consensus 372 ~~~~~w~~~~~~~~~~ 387 (403)
-+-+-||+.||++.+.
T Consensus 23 d~~kDWYktMFkqIHk 38 (47)
T PF02208_consen 23 DRPKDWYKTMFKQIHK 38 (47)
T ss_pred cchhHHHHHHHHHHHh
Confidence 3567899999987654
No 124
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=22.61 E-value=40 Score=22.44 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=5.0
Q ss_pred ehhhhhhhHHHH
Q 015620 358 GLVIGLSVGYMV 369 (403)
Q Consensus 358 ~~~~~~~~~~~~ 369 (403)
++++++.+|+..
T Consensus 13 ~AlI~~pLGyl~ 24 (62)
T PF11120_consen 13 CALIFFPLGYLA 24 (62)
T ss_pred HHHHHHhHHHHH
Confidence 334444444443
No 125
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=22.31 E-value=51 Score=28.08 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=5.1
Q ss_pred eeeeheeehhhh
Q 015620 351 AKMGYGSGLVIG 362 (403)
Q Consensus 351 ~~~~~~~~~~~~ 362 (403)
|++|+++|++..
T Consensus 39 I~iaiVAG~~tV 50 (221)
T PF08374_consen 39 IMIAIVAGIMTV 50 (221)
T ss_pred eeeeeecchhhh
Confidence 344444444333
No 126
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=21.80 E-value=53 Score=22.69 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=18.0
Q ss_pred eeheeehhhhhhhHHHHhcCCchhHHHHH
Q 015620 353 MGYGSGLVIGLSVGYMVFGTGKPRWLVRM 381 (403)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 381 (403)
.|+++|.++|+++++++--..-+.+..++
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP~sG~e~R~~l 31 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAPKSGKETREKL 31 (74)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 46677888888777776644444444333
No 127
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.54 E-value=47 Score=22.27 Aligned_cols=16 Identities=13% Similarity=0.372 Sum_probs=8.2
Q ss_pred heeehhhhhhhHHHHh
Q 015620 355 YGSGLVIGLSVGYMVF 370 (403)
Q Consensus 355 ~~~~~~~~~~~~~~~~ 370 (403)
+.+++++|+++++++.
T Consensus 24 il~~f~~G~llg~l~~ 39 (68)
T PF06305_consen 24 ILIAFLLGALLGWLLS 39 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555555544
No 128
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=20.35 E-value=28 Score=24.74 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=8.7
Q ss_pred eheeehhhhhhhHHHHhc
Q 015620 354 GYGSGLVIGLSVGYMVFG 371 (403)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~ 371 (403)
++++++++++++.+++.+
T Consensus 38 lvI~~iFil~VilwfvCC 55 (94)
T PF05393_consen 38 LVICGIFILLVILWFVCC 55 (94)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555443
No 129
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=20.03 E-value=59 Score=22.06 Aligned_cols=11 Identities=36% Similarity=0.758 Sum_probs=5.0
Q ss_pred eeheeehhhhh
Q 015620 353 MGYGSGLVIGL 363 (403)
Q Consensus 353 ~~~~~~~~~~~ 363 (403)
+|+.+++++++
T Consensus 36 IGvi~gi~~~~ 46 (68)
T PF04971_consen 36 IGVIGGIFFGL 46 (68)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
Done!