Query 015620
Match_columns 403
No_of_seqs 329 out of 4113
Neff 10.1
Searched_HMMs 13730
Date Mon Mar 25 15:47:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015620.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015620hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ogqa_ c.10.2.8 (A:) Polygala 100.0 5.6E-34 4.1E-38 259.7 14.7 258 8-322 51-312 (313)
2 d1ogqa_ c.10.2.8 (A:) Polygala 100.0 3.6E-29 2.6E-33 227.6 11.1 233 5-294 74-310 (313)
3 d1xkua_ c.10.2.7 (A:) Decorin 99.9 3.1E-25 2.3E-29 200.6 24.3 247 10-296 13-260 (305)
4 d1ozna_ c.10.2.7 (A:) Reticulo 99.9 8.4E-25 6.1E-29 195.6 22.5 225 11-292 15-240 (284)
5 d1ozna_ c.10.2.7 (A:) Reticulo 99.9 2.9E-25 2.1E-29 198.7 15.2 235 7-296 32-267 (284)
6 d1p9ag_ c.10.2.7 (G:) von Will 99.9 4E-24 2.9E-28 189.2 21.1 198 41-291 12-209 (266)
7 d2omza2 c.10.2.1 (A:33-416) In 99.9 1.2E-23 8.4E-28 196.2 21.5 84 204-293 284-367 (384)
8 d1p9ag_ c.10.2.7 (G:) von Will 99.9 2.4E-23 1.8E-27 184.1 21.2 202 5-267 8-209 (266)
9 d2omza2 c.10.2.1 (A:33-416) In 99.9 4.2E-22 3.1E-26 185.5 20.7 80 202-287 304-383 (384)
10 d1xkua_ c.10.2.7 (A:) Decorin 99.9 2.9E-21 2.1E-25 174.2 22.9 254 7-295 31-291 (305)
11 d1h6ua2 c.10.2.1 (A:36-262) In 99.8 1.1E-18 7.7E-23 150.2 18.9 185 40-286 42-226 (227)
12 d1xwdc1 c.10.2.7 (C:18-259) Fo 99.8 5.9E-19 4.3E-23 153.3 16.5 220 10-285 11-233 (242)
13 d1jl5a_ c.10.2.6 (A:) Leucine 99.8 8E-17 5.8E-21 147.2 27.6 260 8-295 39-341 (353)
14 d1xwdc1 c.10.2.7 (C:18-259) Fo 99.8 2.8E-18 2E-22 149.0 16.6 213 42-305 11-227 (242)
15 d1h6ta2 c.10.2.1 (A:31-240) In 99.8 2.8E-18 2.1E-22 145.5 15.2 180 45-286 30-209 (210)
16 d1h6ua2 c.10.2.1 (A:36-262) In 99.8 4.6E-18 3.3E-22 146.1 15.4 188 5-262 39-226 (227)
17 d1h6ta2 c.10.2.1 (A:31-240) In 99.8 8.1E-18 5.9E-22 142.6 16.5 163 40-262 47-209 (210)
18 d1w8aa_ c.10.2.7 (A:) Slit {Fr 99.8 2.5E-18 1.9E-22 143.7 12.7 133 9-154 10-143 (192)
19 d2omxa2 c.10.2.1 (A:37-235) In 99.8 1.1E-17 8.2E-22 140.5 16.2 176 45-282 24-199 (199)
20 d1w8aa_ c.10.2.7 (A:) Slit {Fr 99.7 4.2E-18 3.1E-22 142.3 11.5 78 67-149 12-90 (192)
21 d1jl5a_ c.10.2.6 (A:) Leucine 99.7 3.1E-16 2.2E-20 143.3 24.2 251 6-285 57-352 (353)
22 d2omxa2 c.10.2.1 (A:37-235) In 99.7 5.3E-17 3.9E-21 136.3 16.7 177 12-258 23-199 (199)
23 d2astb2 c.10.1.3 (B:2136-2419) 99.6 3.8E-17 2.8E-21 145.0 3.5 86 61-147 44-131 (284)
24 d1dcea3 c.10.2.2 (A:444-567) R 99.6 1.5E-15 1.1E-19 116.6 11.4 104 42-151 1-104 (124)
25 d2astb2 c.10.1.3 (B:2136-2419) 99.6 3.8E-16 2.8E-20 138.5 6.5 207 39-292 46-261 (284)
26 d1dcea3 c.10.2.2 (A:444-567) R 99.6 5.5E-15 4E-19 113.4 10.7 120 10-142 1-122 (124)
27 d1z7xw1 c.10.1.1 (W:1-460) Rib 99.6 2.1E-17 1.5E-21 156.6 -4.5 92 8-99 3-124 (460)
28 d1a9na_ c.10.2.4 (A:) Spliceso 99.5 6.2E-15 4.5E-19 118.8 8.4 61 60-123 15-75 (162)
29 d1a9na_ c.10.2.4 (A:) Spliceso 99.5 1.1E-14 7.9E-19 117.3 8.2 107 41-151 20-126 (162)
30 d2ca6a1 c.10.1.2 (A:2-345) Rna 99.5 2.1E-15 1.5E-19 137.6 3.6 238 6-290 30-315 (344)
31 d2ca6a1 c.10.1.2 (A:2-345) Rna 99.5 3.7E-15 2.7E-19 135.9 2.9 212 39-290 31-286 (344)
32 d1m9la_ c.10.3.1 (A:) Outer ar 99.3 6.4E-15 4.6E-19 122.9 -4.8 56 204-259 114-180 (198)
33 d2ifga3 c.10.2.7 (A:36-191) Hi 99.3 4.2E-12 3.1E-16 101.2 11.0 106 42-151 11-117 (156)
34 d2ifga3 c.10.2.7 (A:36-191) Hi 99.3 2.9E-12 2.1E-16 102.2 9.9 107 206-314 9-117 (156)
35 d1z7xw1 c.10.1.1 (W:1-460) Rib 99.3 2.4E-13 1.8E-17 128.1 3.7 192 83-291 222-440 (460)
36 d1m9la_ c.10.3.1 (A:) Outer ar 99.3 1.9E-14 1.4E-18 120.0 -4.2 76 205-283 93-180 (198)
37 d1koha1 c.10.2.3 (A:201-362) m 98.4 2.2E-09 1.6E-13 85.6 -4.2 88 56-143 58-152 (162)
38 d1koha1 c.10.2.3 (A:201-362) m 98.2 1.3E-07 9.8E-12 74.9 0.6 82 202-283 62-152 (162)
39 d1pgva_ c.10.1.1 (A:) Tropomod 97.8 3.7E-06 2.7E-10 66.7 2.9 84 205-288 44-142 (167)
40 d1pgva_ c.10.1.1 (A:) Tropomod 97.6 1.7E-05 1.2E-09 62.7 4.2 109 39-149 15-143 (167)
41 d1io0a_ c.10.1.1 (A:) Tropomod 97.0 4.8E-05 3.5E-09 59.9 0.3 62 227-288 72-143 (166)
42 d1io0a_ c.10.1.1 (A:) Tropomod 96.8 0.00026 1.9E-08 55.5 2.7 114 5-123 15-144 (166)
No 1
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Probab=100.00 E-value=5.6e-34 Score=259.74 Aligned_cols=258 Identities=29% Similarity=0.444 Sum_probs=180.3
Q ss_pred CccEEECCCCCCCCc--CCCCCCCCCeEeCCCCCCCCEEECcC-CcCcccCCccccCCCCcCEEEccCCcCcCCCCcccc
Q 015620 8 TLYYLDLSNNFLTNI--EYFPPTNMTQLNFDSNLTHKVLDMRM-NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (403)
Q Consensus 8 ~L~~L~Ls~n~l~~~--~~~~~~~L~~L~l~~n~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 84 (403)
+++.|||+++.+++. +|..+.+|+.| ++|+|++ |.++|.+|..|+++++|++|++++|++.+..+..+.
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L--------~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~ 122 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYL--------NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTC--------SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccc--------cccccccccccccccccccccccccchhhhcccccccccccccc
Confidence 355555555555553 23333444333 5555554 455555555555555566666655555555555555
Q ss_pred CCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCc-cEEEccCCccccccchhhhhhhhh
Q 015620 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL-RIIDLSHNEFTGVLLTGYLDNFKA 163 (403)
Q Consensus 85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~ 163 (403)
.+.+|+.+++++|.+.+.+|..+..++.|+.+++++|.+.+.+|..+ ..+..+ +.+++++|++++..+..
T Consensus 123 ~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~--~~l~~l~~~l~~~~n~l~~~~~~~------- 193 (313)
T d1ogqa_ 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPT------- 193 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGG-------
T ss_pred chhhhcccccccccccccCchhhccCcccceeecccccccccccccc--cccccccccccccccccccccccc-------
Confidence 55555566655555555555555555555555555555555555443 444443 55555555555443322
Q ss_pred hcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCC
Q 015620 164 MMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243 (403)
Q Consensus 164 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 243 (403)
...+ ....++++.+...+.+|..+..+++++.+++++|.+.+
T Consensus 194 -------------------------------------~~~l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~ 235 (313)
T d1ogqa_ 194 -------------------------------------FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp -------------------------------------GGGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred -------------------------------------cccc-cccccccccccccccccccccccccccccccccccccc
Confidence 1112 34569999999999999999999999999999999986
Q ss_pred CcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCC
Q 015620 244 DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESC 322 (403)
Q Consensus 244 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~~lc~~~~~~~C 322 (403)
.+| .++.+++|+.|+|++|++++.+|..+.++++|++|+|++|+++|.+|+...+..+....+.||+.+||.|.. .|
T Consensus 236 ~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c 312 (313)
T d1ogqa_ 236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp BGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred ccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence 655 688899999999999999999999999999999999999999999998877888988999999999998864 55
No 2
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Probab=99.95 E-value=3.6e-29 Score=227.63 Aligned_cols=233 Identities=27% Similarity=0.374 Sum_probs=203.9
Q ss_pred CCCCccEEECCC-CCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccc
Q 015620 5 GIATLYYLDLSN-NFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83 (403)
Q Consensus 5 ~~~~L~~L~Ls~-n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 83 (403)
++++|++|+|++ |.++|.+|..+.+|+.| ++|++++|.+.+..+..+..+..|+.+++++|.+.+.+|..+
T Consensus 74 ~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L--------~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l 145 (313)
T d1ogqa_ 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQL--------HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTC--------SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred cCcccccccccccccccccccccccccccc--------chhhhccccccccccccccchhhhcccccccccccccCchhh
Confidence 678999999997 89998888777777766 999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEccCCcCCcCCChhccCCCCC-cEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhh
Q 015620 84 VNCHHLEVLNVGNNQINDNFPNWLEILPEL-QVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFK 162 (403)
Q Consensus 84 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 162 (403)
.++++++.+++++|.+.+.+|..+..+..+ +.+++++|++++..+..+ ..+. ...++++.+...+..+...
T Consensus 146 ~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~--~~l~-~~~l~l~~~~~~~~~~~~~----- 217 (313)
T d1ogqa_ 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLN-LAFVDLSRNMLEGDASVLF----- 217 (313)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGCC-CSEEECCSSEEEECCGGGC-----
T ss_pred ccCcccceeeccccccccccccccccccccccccccccccccccccccc--cccc-ccccccccccccccccccc-----
Confidence 999999999999999999999999988876 899999999998887755 5554 4579999988887665431
Q ss_pred hhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCC
Q 015620 163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242 (403)
Q Consensus 163 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 242 (403)
..++.++.+++++|.+++.+| .++.+++|+.|+|++|+++
T Consensus 218 ---------------------------------------~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~ 257 (313)
T d1ogqa_ 218 ---------------------------------------GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp ---------------------------------------CTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCE
T ss_pred ---------------------------------------ccccccccccccccccccccc-ccccccccccccCccCeec
Confidence 126788999999999997665 5888999999999999999
Q ss_pred CCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCc-CccC-CC
Q 015620 243 GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQ-FEGP-IP 294 (403)
Q Consensus 243 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~-ip 294 (403)
|.+|..++++++|++|+|++|+++|.+|. +.++++|+.+++++|+ +.|. +|
T Consensus 258 g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp 310 (313)
T d1ogqa_ 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSS
T ss_pred ccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCC
Confidence 99999999999999999999999999985 5788999999999997 5653 44
No 3
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.94 E-value=3.1e-25 Score=200.63 Aligned_cols=247 Identities=21% Similarity=0.254 Sum_probs=151.7
Q ss_pred cEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCC
Q 015620 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL 89 (403)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 89 (403)
+.+|=++++++.+|+.-.++ +++|++++|.|+...+.+|.++++|++|++++|.++...|..|.++++|
T Consensus 13 ~~~~C~~~~L~~lP~~l~~~-----------l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L 81 (305)
T d1xkua_ 13 RVVQCSDLGLEKVPKDLPPD-----------TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81 (305)
T ss_dssp TEEECTTSCCCSCCCSCCTT-----------CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CEEEecCCCCCccCCCCCCC-----------CCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCcc
Confidence 44555555566554322222 2555666666654334456666666666666666665455556666666
Q ss_pred CEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCcccccc-chhhhhhhhhhcccC
Q 015620 90 EVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL-LTGYLDNFKAMMHGN 168 (403)
Q Consensus 90 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~~~ 168 (403)
++|++++|+++. +|..+ ...++.|++.+|.+.+..+.. +.....+..++...|...... ....+..++.|+.+.
T Consensus 82 ~~L~l~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~--~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~ 156 (305)
T d1xkua_ 82 ERLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSV--FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 156 (305)
T ss_dssp CEEECCSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHH--HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred CEecccCCccCc-Cccch--hhhhhhhhccccchhhhhhhh--hhccccccccccccccccccCCCccccccccccCccc
Confidence 666666666655 33222 245566666666554322221 133444555555554332211 111122333332222
Q ss_pred CCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCcc
Q 015620 169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSS 248 (403)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 248 (403)
........+. ...+++|+.|++++|..++..+..+..++.++.|++++|.+++..+..
T Consensus 157 l~~n~l~~l~----------------------~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~ 214 (305)
T d1xkua_ 157 IADTNITTIP----------------------QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 214 (305)
T ss_dssp CCSSCCCSCC----------------------SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred cccCCccccC----------------------cccCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccc
Confidence 2111110000 011578899999999999888999999999999999999999777888
Q ss_pred ccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCC
Q 015620 249 LRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG 296 (403)
Q Consensus 249 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~ 296 (403)
+.++++|++|+|++|+++ .+|..+..+++|++|++++|+|+ .++..
T Consensus 215 ~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~ 260 (305)
T d1xkua_ 215 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSN 260 (305)
T ss_dssp GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTT
T ss_pred ccccccceeeeccccccc-ccccccccccCCCEEECCCCccC-ccChh
Confidence 899999999999999998 56888999999999999999998 55543
No 4
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.93 E-value=8.4e-25 Score=195.63 Aligned_cols=225 Identities=20% Similarity=0.140 Sum_probs=183.3
Q ss_pred EEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCC
Q 015620 11 YLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLE 90 (403)
Q Consensus 11 ~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 90 (403)
.++.++++++.++..-. +.+++|+|++|+|+...+.+|.++++|++|++++|++....+..+.+++.++
T Consensus 15 ~v~c~~~~L~~iP~~ip-----------~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~ 83 (284)
T d1ozna_ 15 TTSCPQQGLQAVPVGIP-----------AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83 (284)
T ss_dssp EEECCSSCCSSCCTTCC-----------TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred EEEcCCCCCCccCCCCC-----------CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccc
Confidence 45677777776643222 2347788999999866667899999999999999999987788888888999
Q ss_pred EEEcc-CCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCC
Q 015620 91 VLNVG-NNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN 169 (403)
Q Consensus 91 ~L~l~-~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~ 169 (403)
.++.. .+.++...|..|..+++|++|++++|.+....+..+ ...++|+.+++++|.+++..+..
T Consensus 84 ~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~~~L~~l~l~~N~l~~i~~~~------------- 148 (284)
T d1ozna_ 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQALPDDT------------- 148 (284)
T ss_dssp EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT-------------
T ss_pred ccccccccccccccchhhcccccCCEEecCCccccccccccc--chhcccchhhhccccccccChhH-------------
Confidence 88765 566777778888999999999999998865555544 67888999999999988654432
Q ss_pred CcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccc
Q 015620 170 ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSL 249 (403)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 249 (403)
+...+.|+.|++++|++++..+..|.++++|+.+++++|++++..|..|
T Consensus 149 -------------------------------f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f 197 (284)
T d1ozna_ 149 -------------------------------FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197 (284)
T ss_dssp -------------------------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred -------------------------------hccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHh
Confidence 1125678899999999998888888999999999999999998888999
Q ss_pred cCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccC
Q 015620 250 RNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP 292 (403)
Q Consensus 250 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 292 (403)
.++++|+.||+++|++.+..+..|..+++|++|++++|++.+.
T Consensus 198 ~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~ 240 (284)
T d1ozna_ 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (284)
T ss_dssp TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred hhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence 9999999999999999988888899999999999999998854
No 5
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.92 E-value=2.9e-25 Score=198.71 Aligned_cols=235 Identities=19% Similarity=0.183 Sum_probs=195.0
Q ss_pred CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEcc-CCcCcCCCCccccC
Q 015620 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN-GNRLEGPLPPSLVN 85 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~-~n~l~~~~p~~~~~ 85 (403)
+++++|+|++|.|+.+++..+.+++.| ++|++++|.+....+..+..+..++.+... .+.++...+..|++
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L--------~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 103 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFRACRNL--------TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTC--------CEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred CCCCEEECcCCcCCCCCHHHhhccccc--------cccccccccccccccccccccccccccccccccccccccchhhcc
Confidence 368999999999999888778888766 999999999998888889999999998865 66777667888999
Q ss_pred CCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhc
Q 015620 86 CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM 165 (403)
Q Consensus 86 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 165 (403)
+++|++|++++|.+....+..+..+++|+.+++++|.+++..+..+ ..+++|++|++++|.+++..+..+
T Consensus 104 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f--~~~~~L~~L~l~~N~l~~l~~~~f-------- 173 (284)
T d1ozna_ 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRISSVPERAF-------- 173 (284)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCEECTTTT--------
T ss_pred cccCCEEecCCcccccccccccchhcccchhhhccccccccChhHh--ccccchhhcccccCcccccchhhh--------
Confidence 9999999999999988777888889999999999999976555555 788999999999999986654332
Q ss_pred ccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCc
Q 015620 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI 245 (403)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 245 (403)
..+++|+.+++++|.+++..|..|..+++|++|++++|.+.+..
T Consensus 174 ------------------------------------~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~ 217 (284)
T d1ozna_ 174 ------------------------------------RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (284)
T ss_dssp ------------------------------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ------------------------------------ccccccchhhhhhccccccChhHhhhhhhccccccccccccccc
Confidence 22788999999999999999999999999999999999999888
Q ss_pred CccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCC
Q 015620 246 PSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG 296 (403)
Q Consensus 246 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~ 296 (403)
+..|+.+++|+.|++++|++...-+.. .-...++.+....+++.+..|..
T Consensus 218 ~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~~ 267 (284)
T d1ozna_ 218 TEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (284)
T ss_dssp HHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred ccccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCchH
Confidence 889999999999999999988543211 11122444555566666655554
No 6
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.92 E-value=4e-24 Score=189.20 Aligned_cols=198 Identities=24% Similarity=0.260 Sum_probs=144.4
Q ss_pred CCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015620 41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (403)
Q Consensus 41 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 120 (403)
+..+|.+++.++ .+|..+. +++++|+|++|++++..+..|.++++|++|++++|+|+. +| .++.+++|++|++++
T Consensus 12 ~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~ 86 (266)
T d1p9ag_ 12 HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSH 86 (266)
T ss_dssp CCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCS
T ss_pred CeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccc
Confidence 355677777777 4665553 367777787777775555667777778888888777775 33 346677788888888
Q ss_pred ccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhh
Q 015620 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKM 200 (403)
Q Consensus 121 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (403)
|++++. +..+ ..+++|+.|++++|.+.+..+..
T Consensus 87 N~l~~~-~~~~--~~l~~L~~L~l~~~~~~~~~~~~-------------------------------------------- 119 (266)
T d1p9ag_ 87 NQLQSL-PLLG--QTLPALTVLDVSFNRLTSLPLGA-------------------------------------------- 119 (266)
T ss_dssp SCCSSC-CCCT--TTCTTCCEEECCSSCCCCCCSST--------------------------------------------
T ss_pred cccccc-cccc--ccccccccccccccccceeeccc--------------------------------------------
Confidence 777543 3333 67777888888777766543322
Q ss_pred hhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCC
Q 015620 201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLS 280 (403)
Q Consensus 201 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 280 (403)
+..+..++.|++++|.++...+..+..+++++.+++++|++++..+..+..+++|++|+|++|+|+ .+|..+..+++|+
T Consensus 120 ~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~ 198 (266)
T d1p9ag_ 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP 198 (266)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCS
T ss_pred cccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCC
Confidence 112566778888888888777777778888888999998888777777888888999999999888 6777777888888
Q ss_pred EEeCcCCcCcc
Q 015620 281 VLNLSYNQFEG 291 (403)
Q Consensus 281 ~L~L~~N~l~~ 291 (403)
.|+|++|++.+
T Consensus 199 ~L~L~~Np~~C 209 (266)
T d1p9ag_ 199 FAFLHGNPWLC 209 (266)
T ss_dssp EEECCSCCBCC
T ss_pred EEEecCCCCCC
Confidence 88888887763
No 7
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
Probab=99.91 E-value=1.2e-23 Score=196.16 Aligned_cols=84 Identities=23% Similarity=0.351 Sum_probs=51.4
Q ss_pred cccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEe
Q 015620 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283 (403)
Q Consensus 204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 283 (403)
++.++.++++.|.+++ + ..+..+++++.|++++|++++.. .+..+++|+.|++++|++++ ++ .+..+++|++|+
T Consensus 284 ~~~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~ 357 (384)
T d2omza2 284 LTALTNLELNENQLED-I-SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLS 357 (384)
T ss_dssp CTTCSEEECCSSCCSC-C-GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEE
T ss_pred cccccccccccccccc-c-cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEE
Confidence 5556666666666653 2 23556666677777777666432 25666677777777776663 33 466666777777
Q ss_pred CcCCcCccCC
Q 015620 284 LSYNQFEGPI 293 (403)
Q Consensus 284 L~~N~l~~~i 293 (403)
+++|++++..
T Consensus 358 l~~N~l~~l~ 367 (384)
T d2omza2 358 AGHNQISDLT 367 (384)
T ss_dssp CCSSCCCBCG
T ss_pred CCCCcCCCCh
Confidence 7777666443
No 8
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.91 E-value=2.4e-23 Score=184.14 Aligned_cols=202 Identities=20% Similarity=0.148 Sum_probs=170.8
Q ss_pred CCCCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCcccc
Q 015620 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 84 (403)
....+.++|.++++++.+++.-.+ .+++|+|++|.|++..+.+|.++++|++|+|++|+++ .+| .++
T Consensus 8 ~~~~~~~v~C~~~~L~~iP~~lp~-----------~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~ 74 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLTALPPDLPK-----------DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDG 74 (266)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCCT-----------TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCS
T ss_pred ccCCCeEEEccCCCCCeeCcCcCc-----------CCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccc
Confidence 345667789999999987543222 3478899999999777788999999999999999999 454 468
Q ss_pred CCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhh
Q 015620 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (403)
Q Consensus 85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 164 (403)
.+++|++|++++|+++. .+..+..+++|+.|++++|.+.+..+..+ ..+.++++|++++|.++...+..
T Consensus 75 ~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~l~~L~l~~n~l~~l~~~~-------- 143 (266)
T d1p9ag_ 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGAL--RGLGELQELYLKGNELKTLPPGL-------- 143 (266)
T ss_dssp CCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTT--TTCTTCCEEECTTSCCCCCCTTT--------
T ss_pred ccccccccccccccccc-cccccccccccccccccccccceeecccc--ccccccccccccccccceecccc--------
Confidence 89999999999999987 57788999999999999999876655554 78899999999999998654432
Q ss_pred cccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCC
Q 015620 165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD 244 (403)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 244 (403)
+..++.++.+++++|++++..+..|..+++|++|+|++|+|+ .
T Consensus 144 ------------------------------------~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~ 186 (266)
T d1p9ag_ 144 ------------------------------------LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186 (266)
T ss_dssp ------------------------------------TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred ------------------------------------ccccccchhcccccccccccCccccccccccceeecccCCCc-c
Confidence 122678999999999999888888999999999999999999 8
Q ss_pred cCccccCCCCCCEEeccCCcCCC
Q 015620 245 IPSSLRNLTEVESLDLSSNMLVG 267 (403)
Q Consensus 245 ~p~~~~~l~~L~~L~Ls~n~l~~ 267 (403)
+|..+..+++|+.|+|++|.+..
T Consensus 187 lp~~~~~~~~L~~L~L~~Np~~C 209 (266)
T d1p9ag_ 187 IPKGFFGSHLLPFAFLHGNPWLC 209 (266)
T ss_dssp CCTTTTTTCCCSEEECCSCCBCC
T ss_pred cChhHCCCCCCCEEEecCCCCCC
Confidence 88888899999999999998763
No 9
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
Probab=99.89 E-value=4.2e-22 Score=185.45 Aligned_cols=80 Identities=25% Similarity=0.305 Sum_probs=49.0
Q ss_pred hhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCE
Q 015620 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV 281 (403)
Q Consensus 202 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 281 (403)
..++.++.|++++|++++.. .+..+++|++|++++|++++ ++ .++++++|+.|++++|++++..| +.++++|+.
T Consensus 304 ~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~ 377 (384)
T d2omza2 304 SNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQ 377 (384)
T ss_dssp GGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSE
T ss_pred chhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCE
Confidence 34566666666666666432 25566666666666666652 33 46666666666666666664433 566666666
Q ss_pred EeCcCC
Q 015620 282 LNLSYN 287 (403)
Q Consensus 282 L~L~~N 287 (403)
|++++|
T Consensus 378 L~L~~N 383 (384)
T d2omza2 378 LGLNDQ 383 (384)
T ss_dssp EECCCE
T ss_pred eeCCCC
Confidence 666665
No 10
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.88 E-value=2.9e-21 Score=174.18 Aligned_cols=254 Identities=22% Similarity=0.226 Sum_probs=198.4
Q ss_pred CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCC
Q 015620 7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC 86 (403)
Q Consensus 7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 86 (403)
+++++|+|++|.|+.+++..+.++..| ++|++++|.+....|..|.++++|++|++++|+++ .+|..+ .
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L--------~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~--~ 99 (305)
T d1xkua_ 31 PDTALLDLQNNKITEIKDGDFKNLKNL--------HTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--P 99 (305)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTC--------CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC--C
T ss_pred CCCCEEECcCCcCCCcChhHhhccccc--------cccccccccccccchhhhhCCCccCEecccCCccC-cCccch--h
Confidence 679999999999999988778777766 99999999999878889999999999999999999 566543 4
Q ss_pred CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcc
Q 015620 87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166 (403)
Q Consensus 87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 166 (403)
..++.|++.+|.+.+..+..+.....+..++...|...........+..+++|+.+++++|.++... .....+++.|..
T Consensus 100 ~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~-~~~~~~L~~L~l 178 (305)
T d1xkua_ 100 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP-QGLPPSLTELHL 178 (305)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC-SSCCTTCSEEEC
T ss_pred hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC-cccCCccCEEEC
Confidence 6899999999999987667777888888998888765433333334577889999999999887543 333334333322
Q ss_pred cCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcC
Q 015620 167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIP 246 (403)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 246 (403)
..+ . ........+..++.++.|++++|.+++..+..+.++++|++|+|++|+++ .+|
T Consensus 179 ~~n---~-------------------~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp 235 (305)
T d1xkua_ 179 DGN---K-------------------ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 235 (305)
T ss_dssp TTS---C-------------------CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCC
T ss_pred CCC---c-------------------CCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccc
Confidence 111 0 01112233445788999999999999888999999999999999999998 678
Q ss_pred ccccCCCCCCEEeccCCcCCCCCCcc------ccCCCCCCEEeCcCCcCc-cCCCC
Q 015620 247 SSLRNLTEVESLDLSSNMLVGHIPTQ------LTSLKYLSVLNLSYNQFE-GPIPR 295 (403)
Q Consensus 247 ~~~~~l~~L~~L~Ls~n~l~~~~p~~------~~~l~~L~~L~L~~N~l~-~~ip~ 295 (403)
..+..+++|++|+|++|+|+...... .....+|+.|++++|.++ ..+++
T Consensus 236 ~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~ 291 (305)
T d1xkua_ 236 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 291 (305)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred cccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCH
Confidence 89999999999999999998653333 345788999999999985 34444
No 11
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}
Probab=99.80 E-value=1.1e-18 Score=150.17 Aligned_cols=185 Identities=18% Similarity=0.236 Sum_probs=134.8
Q ss_pred CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcc
Q 015620 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (403)
Q Consensus 40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 119 (403)
+|+.|++++|.++ .++ .+..+++|++|++++|++++ ++ .+..+++|+.+++++|.++. + ..+..+++|+.++++
T Consensus 42 ~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~-~~-~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~ 115 (227)
T d1h6ua2 42 GITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITD-LA-PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLT 115 (227)
T ss_dssp TCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECT
T ss_pred CcCEEECCCCCCC-cch-hHhcCCCCcEeecCCceeec-cc-cccccccccccccccccccc-c-ccccccccccccccc
Confidence 3477777777777 343 57778888888888888874 32 37788888888888887775 3 346778888888888
Q ss_pred cccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchh
Q 015620 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK 199 (403)
Q Consensus 120 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (403)
++...+..+ +...+.++.+.++++.+....+
T Consensus 116 ~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~--------------------------------------------- 146 (227)
T d1h6ua2 116 STQITDVTP----LAGLSNLQVLYLDLNQITNISP--------------------------------------------- 146 (227)
T ss_dssp TSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG---------------------------------------------
T ss_pred cccccccch----hccccchhhhhchhhhhchhhh---------------------------------------------
Confidence 776643322 2456677777777776653321
Q ss_pred hhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCC
Q 015620 200 MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYL 279 (403)
Q Consensus 200 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 279 (403)
....++|+.|++++|.+++.. .+.++++|++|++++|++++ ++. ++++++|+.|++++|++++. + .+.++++|
T Consensus 147 -~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L 219 (227)
T d1h6ua2 147 -LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDV-S-PLANTSNL 219 (227)
T ss_dssp -GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBC-G-GGTTCTTC
T ss_pred -hccccccccccccccccccch--hhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCCC-c-ccccCCCC
Confidence 112677899999999887432 37889999999999999984 443 78899999999999999854 4 37889999
Q ss_pred CEEeCcC
Q 015620 280 SVLNLSY 286 (403)
Q Consensus 280 ~~L~L~~ 286 (403)
+.|++++
T Consensus 220 ~~L~lsn 226 (227)
T d1h6ua2 220 FIVTLTN 226 (227)
T ss_dssp CEEEEEE
T ss_pred CEEEeeC
Confidence 9999874
No 12
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.80 E-value=5.9e-19 Score=153.34 Aligned_cols=220 Identities=15% Similarity=0.067 Sum_probs=129.7
Q ss_pred cEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCC-CccccCCCC
Q 015620 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPL-PPSLVNCHH 88 (403)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~ 88 (403)
+.++.++..++.+++.-.++ +++||+++|.++...+.+|.++++|++|++++|.+...+ +..|.++++
T Consensus 11 ~~i~c~~~~l~~iP~~l~~~-----------l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~ 79 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDLPRN-----------AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79 (242)
T ss_dssp SEEEEESCSCSSCCSCSCSC-----------CSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTT
T ss_pred CEEEEeCCCCCCcCCCCCCC-----------CCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccc
Confidence 45566666666544322222 256667777776444456677777777777777665433 335666777
Q ss_pred CCEEEccC-CcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhccc
Q 015620 89 LEVLNVGN-NQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHG 167 (403)
Q Consensus 89 L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~ 167 (403)
++++++.. |.+....+..|..+++|+++++++|.+....+ ...+..+..+..+..+++.+.......+
T Consensus 80 l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~-~~~~~~l~~l~~~~~~n~~l~~i~~~~~---------- 148 (242)
T d1xwdc1 80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIERNSF---------- 148 (242)
T ss_dssp CCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC-CTTTCBSSCEEEEEESCTTCCEECTTSS----------
T ss_pred cccccccccccccccccccccccccccccccchhhhccccc-cccccccccccccccccccccccccccc----------
Confidence 77776653 55666566666777777777777776643222 1112334445555555555443322111
Q ss_pred CCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEE-EecCCCCCCCcC
Q 015620 168 NNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGL-NISHNNLTGDIP 246 (403)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L-~L~~n~l~~~~p 246 (403)
......++.|++++|+++...+.. ....+++++ .+++|+++...+
T Consensus 149 ---------------------------------~~~~~~l~~L~l~~n~l~~i~~~~-~~~~~l~~~~~l~~n~l~~l~~ 194 (242)
T d1xwdc1 149 ---------------------------------VGLSFESVILWLNKNGIQEIHNCA-FNGTQLDELNLSDNNNLEELPN 194 (242)
T ss_dssp ---------------------------------TTSBSSCEEEECCSSCCCEECTTT-TTTCCEEEEECTTCTTCCCCCT
T ss_pred ---------------------------------ccccccceeeeccccccccccccc-ccchhhhccccccccccccccH
Confidence 011346778888888888544443 344555544 567777874445
Q ss_pred ccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCc
Q 015620 247 SSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLS 285 (403)
Q Consensus 247 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 285 (403)
..|.++++|++|++++|+++...+..|.+++.|+.+++.
T Consensus 195 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~ 233 (242)
T d1xwdc1 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233 (242)
T ss_dssp TTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred HHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence 567888888888888888885555566666666655543
No 13
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
Probab=99.78 E-value=8e-17 Score=147.24 Aligned_cols=260 Identities=22% Similarity=0.251 Sum_probs=132.8
Q ss_pred CccEEECCCCCCCCcCCCCCCCCCeEeCCCC---------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCC
Q 015620 8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP 78 (403)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 78 (403)
++++|||+++.++.++ ...++|+.|++++| .+|+.|++++|.++ .+++. .+.|++|++++|.++ .
T Consensus 39 ~l~~LdLs~~~L~~lp-~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n~l~-~ 112 (353)
T d1jl5a_ 39 QAHELELNNLGLSSLP-ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLE-K 112 (353)
T ss_dssp TCSEEECTTSCCSCCC-SCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCS-S
T ss_pred CCCEEEeCCCCCCCCC-CCCCCCCEEECCCCCCcccccchhhhhhhhhhhcccc-hhhhh---ccccccccccccccc-c
Confidence 5789999999998754 45677877777776 46777777777776 33321 135777777777777 4
Q ss_pred CCccccCCCCCCEEEccCCcCCcCCC------------------hhccCCCCCcEEEcccccccCcCCCC----------
Q 015620 79 LPPSLVNCHHLEVLNVGNNQINDNFP------------------NWLEILPELQVLILRSNRFWGPIGEN---------- 130 (403)
Q Consensus 79 ~p~~~~~l~~L~~L~l~~n~l~~~~p------------------~~~~~l~~L~~L~l~~n~l~~~~~~~---------- 130 (403)
+|. ++.+++|++|+++++.+....+ ..+..++.++.+.+++|.........
T Consensus 113 lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~ 191 (353)
T d1jl5a_ 113 LPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN 191 (353)
T ss_dssp CCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCS
T ss_pred ccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccc
Confidence 553 5667777777777776654211 11223344444444444332110000
Q ss_pred ------CCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhc
Q 015620 131 ------TTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERIL 204 (403)
Q Consensus 131 ------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (403)
.....++.|+.+++++|....... ...++..+..... ........ .............. .......
T Consensus 192 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~--~~~~l~~~~~~~~---~~~~~~~~--~~~l~~~~~~~~~~-~~l~~l~ 263 (353)
T d1jl5a_ 192 NILEELPELQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDN---YLTDLPEL--PQSLTFLDVSENIF-SGLSELP 263 (353)
T ss_dssp SCCSSCCCCTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSS---CCSCCCCC--CTTCCEEECCSSCC-SEESCCC
T ss_pred cccccccccccccccccccccccccccccc--ccccccccccccc---cccccccc--cccccccccccccc-ccccccc
Confidence 001223444444444443332110 0111111110000 00000000 00000000000000 0000001
Q ss_pred ccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeC
Q 015620 205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNL 284 (403)
Q Consensus 205 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 284 (403)
......++..+.+. .....+++|++|+|++|+++ .+|.. +++|+.|+|++|+|+ .+|.. +.+|++|++
T Consensus 264 ~~~~~~~~~~~~~~----~~~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L 331 (353)
T d1jl5a_ 264 PNLYYLNASSNEIR----SLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHV 331 (353)
T ss_dssp TTCCEEECCSSCCS----EECCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEEC
T ss_pred chhcccccccCccc----cccccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEEC
Confidence 22334444444443 22234678899999999888 56643 578889999999888 56643 457889999
Q ss_pred cCCcCccCCCC
Q 015620 285 SYNQFEGPIPR 295 (403)
Q Consensus 285 ~~N~l~~~ip~ 295 (403)
++|+++ .+|.
T Consensus 332 ~~N~L~-~lp~ 341 (353)
T d1jl5a_ 332 EYNPLR-EFPD 341 (353)
T ss_dssp CSSCCS-SCCC
T ss_pred cCCcCC-CCCc
Confidence 999887 5665
No 14
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.78 E-value=2.8e-18 Score=148.98 Aligned_cols=213 Identities=14% Similarity=0.110 Sum_probs=159.1
Q ss_pred CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCC-ChhccCCCCCcEEEccc
Q 015620 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNF-PNWLEILPELQVLILRS 120 (403)
Q Consensus 42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~ 120 (403)
+.++.++.+++ .+|..+. +++++|++++|+++...+..|.++++|++|++++|.+...+ +.+|..++.++++.+..
T Consensus 11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~ 87 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence 67889998888 7776653 48999999999999655567999999999999999987644 46788999999998765
Q ss_pred -ccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchh
Q 015620 121 -NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK 199 (403)
Q Consensus 121 -n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (403)
|.+....+..+ .++++|+++++++|.+....+.....
T Consensus 88 ~n~l~~~~~~~~--~~l~~L~~l~l~~~~l~~~~~~~~~~---------------------------------------- 125 (242)
T d1xwdc1 88 ANNLLYINPEAF--QNLPNLQYLLISNTGIKHLPDVHKIH---------------------------------------- 125 (242)
T ss_dssp CTTCCEECTTSE--ECCTTCCEEEEESCCCCSCCCCTTTC----------------------------------------
T ss_pred cccccccccccc--cccccccccccchhhhcccccccccc----------------------------------------
Confidence 56655555544 88999999999999887543322111
Q ss_pred hhhhcccceEEEcccCcccccCCcccCCCC-CCCEEEecCCCCCCCcCccccCCCCCCEE-eccCCcCCCCCCccccCCC
Q 015620 200 MERILTIFMTIDLSSNKFQGGIPEVVGKLN-LLKGLNISHNNLTGDIPSSLRNLTEVESL-DLSSNMLVGHIPTQLTSLK 277 (403)
Q Consensus 200 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L-~Ls~n~l~~~~p~~~~~l~ 277 (403)
.+..+..+..+++.+....+..+..++ .++.|++++|+++. ++.......+++.+ ++++|+++...+..|.+++
T Consensus 126 ---~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~ 201 (242)
T d1xwdc1 126 ---SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGAS 201 (242)
T ss_dssp ---BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSC
T ss_pred ---cccccccccccccccccccccccccccccceeeecccccccc-cccccccchhhhccccccccccccccHHHhcCCC
Confidence 134556666677777766666666654 78899999999984 44444455665554 6788899866667789999
Q ss_pred CCCEEeCcCCcCccCCCCCCCCCCCCCC
Q 015620 278 YLSVLNLSYNQFEGPIPRGSQFNTFPND 305 (403)
Q Consensus 278 ~L~~L~L~~N~l~~~ip~~~~~~~~~~~ 305 (403)
+|++|++++|.++ .+|.. .+..+..+
T Consensus 202 ~L~~L~Ls~N~l~-~l~~~-~~~~l~~L 227 (242)
T d1xwdc1 202 GPVILDISRTRIH-SLPSY-GLENLKKL 227 (242)
T ss_dssp CCSEEECTTSCCC-CCCSS-SCTTCCEE
T ss_pred CCCEEECCCCcCC-ccCHH-HHcCCccc
Confidence 9999999999998 66654 24444433
No 15
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.77 E-value=2.8e-18 Score=145.47 Aligned_cols=180 Identities=21% Similarity=0.309 Sum_probs=114.5
Q ss_pred ECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccccccc
Q 015620 45 DMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124 (403)
Q Consensus 45 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 124 (403)
++..+.+++.++. ..+.+|++|++++|.++. ++ .+..+++|++|++++|++++. + .++.+++|++|++++|+++
T Consensus 30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~ 103 (210)
T d1h6ta2 30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK 103 (210)
T ss_dssp HTTCSCTTSEECH--HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred HhCcCccCCccCH--HHhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccc
Confidence 3444444433332 234566777777777763 33 356677777777777777663 2 2566777777777777764
Q ss_pred CcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhc
Q 015620 125 GPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERIL 204 (403)
Q Consensus 125 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (403)
+ ++. +..+++|+.|++++|.+..... ...+
T Consensus 104 ~-l~~---l~~l~~L~~L~l~~~~~~~~~~----------------------------------------------l~~l 133 (210)
T d1h6ta2 104 D-LSS---LKDLKKLKSLSLEHNGISDING----------------------------------------------LVHL 133 (210)
T ss_dssp C-GGG---GTTCTTCCEEECTTSCCCCCGG----------------------------------------------GGGC
T ss_pred c-ccc---cccccccccccccccccccccc----------------------------------------------cccc
Confidence 3 221 2566777777777776543211 0114
Q ss_pred ccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeC
Q 015620 205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNL 284 (403)
Q Consensus 205 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 284 (403)
+.++.+++++|.+++ +..+..+++|+.+++++|++++ ++ .+.++++|+.|++++|+++ .+| .+.++++|++|+|
T Consensus 134 ~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~L 207 (210)
T d1h6ta2 134 PQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLEL 207 (210)
T ss_dssp TTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEE
T ss_pred ccccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEc
Confidence 567777777777763 2345667888888888888874 33 2778888888888888887 344 4788888888887
Q ss_pred cC
Q 015620 285 SY 286 (403)
Q Consensus 285 ~~ 286 (403)
++
T Consensus 208 s~ 209 (210)
T d1h6ta2 208 FS 209 (210)
T ss_dssp EE
T ss_pred cC
Confidence 64
No 16
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}
Probab=99.76 E-value=4.6e-18 Score=146.11 Aligned_cols=188 Identities=20% Similarity=0.277 Sum_probs=148.5
Q ss_pred CCCCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCcccc
Q 015620 5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84 (403)
Q Consensus 5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 84 (403)
++++|+.|++++|.|+... .+.++ ++|++|++++|.+++.. .+..+++|+++++++|.++ .++ .+.
T Consensus 39 ~l~~L~~L~l~~~~i~~l~--~l~~l--------~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~-~l~ 104 (227)
T d1h6ua2 39 DLDGITTLSAFGTGVTTIE--GVQYL--------NNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVS-AIA 104 (227)
T ss_dssp HHHTCCEEECTTSCCCCCT--TGGGC--------TTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCG-GGT
T ss_pred HcCCcCEEECCCCCCCcch--hHhcC--------CCCcEeecCCceeeccc--ccccccccccccccccccc-ccc-ccc
Confidence 3567888888888887652 12333 45589999999998544 3889999999999999988 454 588
Q ss_pred CCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhh
Q 015620 85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM 164 (403)
Q Consensus 85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 164 (403)
++++|+.++++++...+. ..+...+.++.+.++++.+....+ +...++|++|++++|.+.+..+ +
T Consensus 105 ~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n~~~~~~~---l------ 169 (227)
T d1h6ua2 105 GLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVSDLTP---L------ 169 (227)
T ss_dssp TCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG---G------
T ss_pred cccccccccccccccccc--chhccccchhhhhchhhhhchhhh----hccccccccccccccccccchh---h------
Confidence 999999999999988764 346778899999999988754332 3678899999999998874322 1
Q ss_pred cccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCC
Q 015620 165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD 244 (403)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 244 (403)
..+++|+.|++++|++++ ++. ++.+++|++|+|++|++++
T Consensus 170 -------------------------------------~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~- 209 (227)
T d1h6ua2 170 -------------------------------------ANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD- 209 (227)
T ss_dssp -------------------------------------TTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-
T ss_pred -------------------------------------cccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCC-
Confidence 126789999999999985 443 7899999999999999984
Q ss_pred cCccccCCCCCCEEeccC
Q 015620 245 IPSSLRNLTEVESLDLSS 262 (403)
Q Consensus 245 ~p~~~~~l~~L~~L~Ls~ 262 (403)
++ .++++++|+.|++++
T Consensus 210 i~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 210 VS-PLANTSNLFIVTLTN 226 (227)
T ss_dssp CG-GGTTCTTCCEEEEEE
T ss_pred Cc-ccccCCCCCEEEeeC
Confidence 44 388999999999974
No 17
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.76 E-value=8.1e-18 Score=142.63 Aligned_cols=163 Identities=27% Similarity=0.385 Sum_probs=133.0
Q ss_pred CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcc
Q 015620 40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119 (403)
Q Consensus 40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 119 (403)
+|+.|++++|.++. ++ .+..+++|++|++++|++++ ++ .++++++|++|++++|++++ +| .+..+++|+.|+++
T Consensus 47 ~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~ 120 (210)
T d1h6ta2 47 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (210)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred CccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-cccccccccccccc
Confidence 45888999999874 33 47889999999999999994 54 47899999999999999987 44 58889999999999
Q ss_pred cccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchh
Q 015620 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK 199 (403)
Q Consensus 120 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (403)
+|.+.. ++ .+..+++++.+++++|.+++....
T Consensus 121 ~~~~~~-~~---~l~~l~~l~~l~~~~n~l~~~~~~-------------------------------------------- 152 (210)
T d1h6ta2 121 HNGISD-IN---GLVHLPQLESLYLGNNKITDITVL-------------------------------------------- 152 (210)
T ss_dssp TSCCCC-CG---GGGGCTTCCEEECCSSCCCCCGGG--------------------------------------------
T ss_pred cccccc-cc---cccccccccccccccccccccccc--------------------------------------------
Confidence 998743 22 237789999999999988754221
Q ss_pred hhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccC
Q 015620 200 MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSS 262 (403)
Q Consensus 200 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 262 (403)
..+++|+.+++++|++++ ++. +.++++|++|+|++|+++ .+| .+.++++|++|+|++
T Consensus 153 --~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 153 --SRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp --GGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred --cccccccccccccccccc-ccc-ccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence 126789999999999985 443 789999999999999998 455 589999999999974
No 18
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.76 E-value=2.5e-18 Score=143.66 Aligned_cols=133 Identities=22% Similarity=0.204 Sum_probs=112.3
Q ss_pred ccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccC-CccccCCCCcCEEEccCCcCcCCCCccccCCC
Q 015620 9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKI-PRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH 87 (403)
Q Consensus 9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 87 (403)
.+.++.++++++.+++.-.+ .+++|+|++|.|++.+ +..|.++++|++|++++|++....+..|..++
T Consensus 10 ~~~v~Cs~~~L~~iP~~lp~-----------~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~ 78 (192)
T d1w8aa_ 10 GTTVDCTGRGLKEIPRDIPL-----------HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT-----------TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred CCEEEEeCCCcCccCCCCCC-----------CCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc
Confidence 46789999999987653322 3377899999998644 66788999999999999999988888999999
Q ss_pred CCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccc
Q 015620 88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL 154 (403)
Q Consensus 88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 154 (403)
+|++|++++|+++.+.|.+|.++++|++|+|++|++++..+..+ ..+++|++|++++|.+.....
T Consensus 79 ~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f--~~l~~L~~l~L~~N~~~~~~~ 143 (192)
T d1w8aa_ 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGG
T ss_pred ccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHh--cCCcccccccccccccccccc
Confidence 99999999999999888889999999999999999987666655 889999999999998876543
No 19
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.75 E-value=1.1e-17 Score=140.49 Aligned_cols=176 Identities=27% Similarity=0.350 Sum_probs=105.5
Q ss_pred ECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccccccc
Q 015620 45 DMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124 (403)
Q Consensus 45 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 124 (403)
.++.+.+++.++ ...+.++++|++++|.++ .++ .+..+++|++|++++|++++..| +..+++|++|++++|.+.
T Consensus 24 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~-~l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~ 97 (199)
T d2omxa2 24 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 97 (199)
T ss_dssp HTTCSSTTSEEC--HHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred HhCCCCCCCccC--HHHhcCCCEEECCCCCCC-Ccc-ccccCCCcCcCccccccccCccc--ccCCcccccccccccccc
Confidence 344444443322 234556666777776666 332 35666777777777777666322 666677777777766653
Q ss_pred CcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhc
Q 015620 125 GPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERIL 204 (403)
Q Consensus 125 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (403)
.. + .+..++.|+.|+++++......+ ...+
T Consensus 98 ~~-~---~l~~l~~L~~L~l~~~~~~~~~~----------------------------------------------~~~l 127 (199)
T d2omxa2 98 DI-T---PLANLTNLTGLTLFNNQITDIDP----------------------------------------------LKNL 127 (199)
T ss_dssp CC-G---GGTTCTTCSEEECCSSCCCCCGG----------------------------------------------GTTC
T ss_pred cc-c---ccccccccccccccccccccccc----------------------------------------------cchh
Confidence 32 2 12566667777776666553211 0114
Q ss_pred ccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEE
Q 015620 205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL 282 (403)
Q Consensus 205 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 282 (403)
++|+.|++++|.++ .++ .+..+++|+.|++.+|++++ ++ .++++++|+.|++++|++++ ++ .+.++++|+.|
T Consensus 128 ~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L 199 (199)
T d2omxa2 128 TNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL 199 (199)
T ss_dssp TTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred hhhHHhhhhhhhhc-ccc-cccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence 56677777777765 333 36677777778887777774 32 36777788888888887764 33 36667777654
No 20
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.74 E-value=4.2e-18 Score=142.31 Aligned_cols=78 Identities=19% Similarity=0.283 Sum_probs=32.4
Q ss_pred EEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcC-CChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEcc
Q 015620 67 SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLS 145 (403)
Q Consensus 67 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 145 (403)
.++.++++++ .+|..+. +++++|+|++|+|+.. .+..|..+++|+.|++++|.+.+..+..+ ..+++|++|+++
T Consensus 12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~--~~~~~L~~L~Ls 86 (192)
T d1w8aa_ 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF--EGASHIQELQLG 86 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT--TTCTTCCEEECC
T ss_pred EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccc--ccccccceeeec
Confidence 4444444444 3443331 3444445555544432 22334444444444444444433333322 333333433333
Q ss_pred CCcc
Q 015620 146 HNEF 149 (403)
Q Consensus 146 ~n~l 149 (403)
+|++
T Consensus 87 ~N~l 90 (192)
T d1w8aa_ 87 ENKI 90 (192)
T ss_dssp SCCC
T ss_pred cccc
Confidence 3333
No 21
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
Probab=99.73 E-value=3.1e-16 Score=143.30 Aligned_cols=251 Identities=20% Similarity=0.204 Sum_probs=165.9
Q ss_pred CCCccEEECCCCCCCCcCCCCCCCCCeEeCCCC---------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCc
Q 015620 6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE 76 (403)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 76 (403)
.++|++|++++|+|+.+ |..+.+|+.|++++| +.|++|++++|.+. .+|. ++.+++|+.|+++++.+.
T Consensus 57 ~~~L~~L~Ls~N~l~~l-p~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~ 133 (353)
T d1jl5a_ 57 PPHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK 133 (353)
T ss_dssp CTTCSEEECCSSCCSSC-CCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred CCCCCEEECCCCCCccc-ccchhhhhhhhhhhcccchhhhhccccccccccccccc-cccc-hhhhccceeecccccccc
Confidence 47899999999999966 566789999999999 57999999999998 5664 678999999999999877
Q ss_pred CCC------------------CccccCCCCCCEEEccCCcCCcCC------------------ChhccCCCCCcEEEccc
Q 015620 77 GPL------------------PPSLVNCHHLEVLNVGNNQINDNF------------------PNWLEILPELQVLILRS 120 (403)
Q Consensus 77 ~~~------------------p~~~~~l~~L~~L~l~~n~l~~~~------------------p~~~~~l~~L~~L~l~~ 120 (403)
... +..+..++.++.+++++|...... ...+..++.|+.+++++
T Consensus 134 ~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 213 (353)
T d1jl5a_ 134 KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213 (353)
T ss_dssp CCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCS
T ss_pred ccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 321 123456778888888887654411 11245678899999999
Q ss_pred ccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhh
Q 015620 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKM 200 (403)
Q Consensus 121 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (403)
|.... ++ ....++..+++..+.+...... ...+........ ....+....... ..... ........
T Consensus 214 n~~~~-~~-----~~~~~l~~~~~~~~~~~~~~~~--~~~l~~~~~~~~---~~~~l~~l~~~~--~~~~~-~~~~~~~~ 279 (353)
T d1jl5a_ 214 NLLKT-LP-----DLPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSEN---IFSGLSELPPNL--YYLNA-SSNEIRSL 279 (353)
T ss_dssp SCCSS-CC-----SCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSS---CCSEESCCCTTC--CEEEC-CSSCCSEE
T ss_pred ccccc-cc-----cccccccccccccccccccccc--cccccccccccc---cccccccccchh--ccccc-ccCccccc
Confidence 87643 33 2345677888888877643221 111111111110 000111110000 00000 00011112
Q ss_pred hhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCC
Q 015620 201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLS 280 (403)
Q Consensus 201 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 280 (403)
...+++|++|++++|+++ .+|.. +++|+.|+|++|+|+ .+|.. +++|+.|++++|+++ .+|... .+|+
T Consensus 280 ~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~---~~L~ 347 (353)
T d1jl5a_ 280 CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIP---ESVE 347 (353)
T ss_dssp CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCC---TTCC
T ss_pred cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccc---cccC
Confidence 233688999999999998 67754 678999999999998 67753 568999999999998 667543 3567
Q ss_pred EEeCc
Q 015620 281 VLNLS 285 (403)
Q Consensus 281 ~L~L~ 285 (403)
.|.+.
T Consensus 348 ~L~~~ 352 (353)
T d1jl5a_ 348 DLRMN 352 (353)
T ss_dssp EEECC
T ss_pred eeECc
Confidence 77654
No 22
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.73 E-value=5.3e-17 Score=136.31 Aligned_cols=177 Identities=28% Similarity=0.307 Sum_probs=135.0
Q ss_pred EECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCE
Q 015620 12 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEV 91 (403)
Q Consensus 12 L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 91 (403)
..++.+.+++.++. ..+ .+++.|++++|.++. + +.+..+++|++|++++|++++ +++ ++++++|++
T Consensus 23 ~~l~~~~~~~~~~~--~~l--------~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~ 88 (199)
T d2omxa2 23 TVLGKTNVTDTVSQ--TDL--------DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVD 88 (199)
T ss_dssp HHTTCSSTTSEECH--HHH--------TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCE
T ss_pred HHhCCCCCCCccCH--HHh--------cCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccC-ccc-ccCCccccc
Confidence 34566666655431 112 344788888888873 4 357889999999999999984 443 899999999
Q ss_pred EEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCc
Q 015620 92 LNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNIS 171 (403)
Q Consensus 92 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~ 171 (403)
|++++|.+... + .+..++.|+.|++++|......+ +..+++|+.|++++|.+..... +
T Consensus 89 L~l~~n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~---l------------- 146 (199)
T d2omxa2 89 ILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSNTISDISA---L------------- 146 (199)
T ss_dssp EECCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCCCGG---G-------------
T ss_pred ccccccccccc-c-ccccccccccccccccccccccc----cchhhhhHHhhhhhhhhccccc---c-------------
Confidence 99999998773 3 48899999999999998754322 3778999999999998864321 1
Q ss_pred ccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccC
Q 015620 172 VEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRN 251 (403)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 251 (403)
..+++++.|++++|++++ ++ .++++++|++|++++|++++ ++ .+++
T Consensus 147 ------------------------------~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~ 192 (199)
T d2omxa2 147 ------------------------------SGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSD-IS-VLAK 192 (199)
T ss_dssp ------------------------------TTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CG-GGGG
T ss_pred ------------------------------cccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCC-Cc-cccC
Confidence 116788999999999985 33 37899999999999999984 44 5788
Q ss_pred CCCCCEE
Q 015620 252 LTEVESL 258 (403)
Q Consensus 252 l~~L~~L 258 (403)
+++|+.|
T Consensus 193 L~~L~~L 199 (199)
T d2omxa2 193 LTNLESL 199 (199)
T ss_dssp CTTCSEE
T ss_pred CCCCCcC
Confidence 9999876
No 23
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.63 E-value=3.8e-17 Score=145.05 Aligned_cols=86 Identities=20% Similarity=0.214 Sum_probs=46.6
Q ss_pred CCCCcCEEEccCCcCcCC-CCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccccc-ccCcCCCCCCccCCCC
Q 015620 61 KSCNLTSLNLNGNRLEGP-LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR-FWGPIGENTTIVPFPS 138 (403)
Q Consensus 61 ~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~ 138 (403)
...+|++|+++++.++.. ++..+.++++|++|+++++.+++..+..+..+++|++|+++++. ++...-.. ....+++
T Consensus 44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~-l~~~~~~ 122 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSR 122 (284)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTT
T ss_pred cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccch-hhHHHHh
Confidence 344666666666665522 23345566666666666666665555566666666666666642 22110000 0134566
Q ss_pred ccEEEccCC
Q 015620 139 LRIIDLSHN 147 (403)
Q Consensus 139 L~~L~l~~n 147 (403)
|++|+++++
T Consensus 123 L~~L~ls~c 131 (284)
T d2astb2 123 LDELNLSWC 131 (284)
T ss_dssp CCEEECCCC
T ss_pred ccccccccc
Confidence 666666664
No 24
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.62 E-value=1.5e-15 Score=116.64 Aligned_cols=104 Identities=29% Similarity=0.460 Sum_probs=61.7
Q ss_pred CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015620 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121 (403)
Q Consensus 42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 121 (403)
++||+++|+++ .++ .+..+++|++|++++|+++ .+|+.|+.+++|++|++++|.|+. +| .+..+++|++|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence 35666666665 333 3566666666666666666 455566666666666666666665 33 3566666666666666
Q ss_pred cccCcCCCCCCccCCCCccEEEccCCcccc
Q 015620 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151 (403)
Q Consensus 122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 151 (403)
++... +....+..+++|++|++++|.++.
T Consensus 76 ~i~~~-~~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 76 RLQQS-AAIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp CCCSS-STTGGGGGCTTCCEEECTTSGGGG
T ss_pred ccCCC-CCchhhcCCCCCCEEECCCCcCCc
Confidence 66432 221123556666666666666654
No 25
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.59 E-value=3.8e-16 Score=138.51 Aligned_cols=207 Identities=16% Similarity=0.192 Sum_probs=135.5
Q ss_pred CCCCEEECcCCcCccc-CCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCC-cCCcC-CChhccCCCCCcE
Q 015620 39 LTHKVLDMRMNNFNGK-IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN-QINDN-FPNWLEILPELQV 115 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~ 115 (403)
.+|++||++++.++.. ++..+..+++|++|+++++.++...+..++.+++|++|+++++ .++.. +......+++|++
T Consensus 46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~ 125 (284)
T d2astb2 46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125 (284)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence 4679999999888743 4455778899999999999988777778888999999999985 45532 2223456889999
Q ss_pred EEccccc-ccCcCCCCCCccCCCCccEEEccCCc--cccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEE
Q 015620 116 LILRSNR-FWGPIGENTTIVPFPSLRIIDLSHNE--FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILT 192 (403)
Q Consensus 116 L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (403)
|+++++. +++...........++|+.|+++++. ++.....
T Consensus 126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~------------------------------------- 168 (284)
T d2astb2 126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS------------------------------------- 168 (284)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH-------------------------------------
T ss_pred cccccccccccccchhhhcccccccchhhhccccccccccccc-------------------------------------
Confidence 9998863 32111000001234678888887642 2211110
Q ss_pred EeccchhhhhhcccceEEEcccC-cccccCCcccCCCCCCCEEEecCC-CCCCCcCccccCCCCCCEEeccCCcCCCC-C
Q 015620 193 IKGIDIKMERILTIFMTIDLSSN-KFQGGIPEVVGKLNLLKGLNISHN-NLTGDIPSSLRNLTEVESLDLSSNMLVGH-I 269 (403)
Q Consensus 193 ~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~ 269 (403)
.+...+++|++|++++| .+++.....+..+++|++|++++| .+++.....++++++|+.|+++++ ++.. +
T Consensus 169 ------~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l 241 (284)
T d2astb2 169 ------TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTL 241 (284)
T ss_dssp ------HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCH
T ss_pred ------ccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHH
Confidence 11223678888888875 477677777788888888888885 566666666778888888888877 3322 2
Q ss_pred CccccCCCCCCEEeCcCCcCccC
Q 015620 270 PTQLTSLKYLSVLNLSYNQFEGP 292 (403)
Q Consensus 270 p~~~~~l~~L~~L~L~~N~l~~~ 292 (403)
+.....+++| ++..++++..
T Consensus 242 ~~l~~~lp~L---~i~~~~ls~~ 261 (284)
T d2astb2 242 QLLKEALPHL---QINCSHFTTI 261 (284)
T ss_dssp HHHHHHSTTS---EESCCCSCCT
T ss_pred HHHHHhCccc---cccCccCCCC
Confidence 2222334444 4455666643
No 26
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.57 E-value=5.5e-15 Score=113.39 Aligned_cols=120 Identities=23% Similarity=0.251 Sum_probs=94.6
Q ss_pred cEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCC
Q 015620 10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL 89 (403)
Q Consensus 10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 89 (403)
|+|||++|+++... .+.++. +|++|++++|.++ .+|+.|+.+++|+.|++++|+++ .+| .+.++++|
T Consensus 1 R~L~Ls~n~l~~l~--~l~~l~--------~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L 67 (124)
T d1dcea3 1 RVLHLAHKDLTVLC--HLEQLL--------LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRL 67 (124)
T ss_dssp SEEECTTSCCSSCC--CGGGGT--------TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSC
T ss_pred CEEEcCCCCCCCCc--ccccCC--------CCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-cccccccc
Confidence 68999999998664 244444 4499999999998 67888999999999999999999 555 58999999
Q ss_pred CEEEccCCcCCcCCC-hhccCCCCCcEEEcccccccCcCCCCC-CccCCCCccEE
Q 015620 90 EVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGENT-TIVPFPSLRII 142 (403)
Q Consensus 90 ~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L 142 (403)
++|++++|+++.... ..+..+++|++|++++|+++....... ....+|+|+.|
T Consensus 68 ~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 68 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 999999999987432 568899999999999999865322111 11345666654
No 27
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.57 E-value=2.1e-17 Score=156.58 Aligned_cols=92 Identities=20% Similarity=0.314 Sum_probs=54.0
Q ss_pred CccEEECCCCCCCCcCC----CCCCCCCeEeCCCC-----------------CCCCEEECcCCcCccc----CCcccc-C
Q 015620 8 TLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGK----IPRKFV-K 61 (403)
Q Consensus 8 ~L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n-----------------~~L~~L~Ls~n~l~~~----~p~~~~-~ 61 (403)
+|+.||++.|++++..- ..+++++.|+|++| ++|+.|||++|.++.. +...+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 46667777777765421 44566666666666 5677777777766521 122222 2
Q ss_pred CCCcCEEEccCCcCcCC----CCccccCCCCCCEEEccCCcC
Q 015620 62 SCNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQI 99 (403)
Q Consensus 62 l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l 99 (403)
.++|++|++++|+++.. ++..+..+++|++|++++|.+
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i 124 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 124 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence 24577777777766532 334456667777777776654
No 28
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.54 E-value=6.2e-15 Score=118.81 Aligned_cols=61 Identities=16% Similarity=0.331 Sum_probs=28.1
Q ss_pred cCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccc
Q 015620 60 VKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123 (403)
Q Consensus 60 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 123 (403)
.+..++++|+|++|+|+ .++..+..+++|++|++++|.|+.. + .+..+++|++|++++|++
T Consensus 15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i 75 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRI 75 (162)
T ss_dssp ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCC
T ss_pred cCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc-C-CcccCcchhhhhcccccc
Confidence 34444455555555554 3343344444555555555554432 1 244444444444444444
No 29
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.52 E-value=1.1e-14 Score=117.35 Aligned_cols=107 Identities=22% Similarity=0.263 Sum_probs=54.6
Q ss_pred CCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015620 41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (403)
Q Consensus 41 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 120 (403)
++.|||++|.|+ .+++.+..+++|+.|++++|+++ .++ .|..+++|++|++++|+++...+..+..+++|++|++++
T Consensus 20 lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~ 96 (162)
T d1a9na_ 20 DRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 96 (162)
T ss_dssp CEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred CcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceecc
Confidence 355555555555 33444445555555555555555 232 355555555555555555554344444555555555555
Q ss_pred ccccCcCCCCCCccCCCCccEEEccCCcccc
Q 015620 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151 (403)
Q Consensus 121 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 151 (403)
|++... ++...+..+++|++|++++|.++.
T Consensus 97 N~i~~~-~~l~~l~~l~~L~~L~l~~N~i~~ 126 (162)
T d1a9na_ 97 NSLVEL-GDLDPLASLKSLTYLCILRNPVTN 126 (162)
T ss_dssp CCCCCG-GGGGGGGGCTTCCEEECCSSGGGG
T ss_pred cccccc-ccccccccccccchhhcCCCcccc
Confidence 555321 111122455555666666555543
No 30
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=99.51 E-value=2.1e-15 Score=137.61 Aligned_cols=238 Identities=16% Similarity=0.111 Sum_probs=156.1
Q ss_pred CCCccEEECCCCCCCCcCC----CCCCCCCeEeCCCCCCCCEEECcCCcCccc----------CCccccCCCCcCEEEcc
Q 015620 6 IATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSNLTHKVLDMRMNNFNGK----------IPRKFVKSCNLTSLNLN 71 (403)
Q Consensus 6 ~~~L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~----------~p~~~~~l~~L~~L~L~ 71 (403)
.+.++.|+|++|.+..... ..+... ++|+.++++++..... +...+..+++|+.|+|+
T Consensus 30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~--------~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~ 101 (344)
T d2ca6a1 30 DDSVKEIVLSGNTIGTEAARWLSENIASK--------KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 101 (344)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTC--------TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred CCCCCEEECcCCcCCHHHHHHHHHHHHhC--------CCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence 4567777777776654321 112222 4557888877654321 12335567899999999
Q ss_pred CCcCcCC----CCccccCCCCCCEEEccCCcCCcCCChh-------------ccCCCCCcEEEcccccccCcCCCCC--C
Q 015620 72 GNRLEGP----LPPSLVNCHHLEVLNVGNNQINDNFPNW-------------LEILPELQVLILRSNRFWGPIGENT--T 132 (403)
Q Consensus 72 ~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~~-------------~~~l~~L~~L~l~~n~l~~~~~~~~--~ 132 (403)
+|.++.. +...+..+++|++|++++|.+....... ....+.|+.+.+++|.+.......+ .
T Consensus 102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~ 181 (344)
T d2ca6a1 102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 181 (344)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence 9998854 3334557899999999999875321111 1356789999999998743221111 1
Q ss_pred ccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEc
Q 015620 133 IVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDL 212 (403)
Q Consensus 133 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 212 (403)
+...+.|+.|++++|.++.......+. ......+.|+.|++
T Consensus 182 l~~~~~L~~L~L~~n~i~~~g~~~~l~---------------------------------------~~l~~~~~L~~L~L 222 (344)
T d2ca6a1 182 FQSHRLLHTVKMVQNGIRPEGIEHLLL---------------------------------------EGLAYCQELKVLDL 222 (344)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHH---------------------------------------TTGGGCTTCCEEEC
T ss_pred hhhhhhhcccccccccccccccccchh---------------------------------------hhhcchhhhccccc
Confidence 245678999999999887432111110 01122678999999
Q ss_pred ccCccccc----CCcccCCCCCCCEEEecCCCCCCCcCc----cccC--CCCCCEEeccCCcCCCCC----Cccc-cCCC
Q 015620 213 SSNKFQGG----IPEVVGKLNLLKGLNISHNNLTGDIPS----SLRN--LTEVESLDLSSNMLVGHI----PTQL-TSLK 277 (403)
Q Consensus 213 s~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~--l~~L~~L~Ls~n~l~~~~----p~~~-~~l~ 277 (403)
++|.++.. +...+..+++|++|+|++|.+++.... .+.. .+.|++|++++|+++... ...+ .+++
T Consensus 223 s~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~ 302 (344)
T d2ca6a1 223 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302 (344)
T ss_dssp CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred ccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCC
Confidence 99998643 445677889999999999999753222 2222 367999999999987532 3333 2578
Q ss_pred CCCEEeCcCCcCc
Q 015620 278 YLSVLNLSYNQFE 290 (403)
Q Consensus 278 ~L~~L~L~~N~l~ 290 (403)
.|+.|++++|.+.
T Consensus 303 ~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 303 DLLFLELNGNRFS 315 (344)
T ss_dssp TCCEEECTTSBSC
T ss_pred CCCEEECCCCcCC
Confidence 8999999999986
No 31
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=99.48 E-value=3.7e-15 Score=135.92 Aligned_cols=212 Identities=17% Similarity=0.225 Sum_probs=150.3
Q ss_pred CCCCEEECcCCcCccc----CCccccCCCCcCEEEccCCcCcCC----------CCccccCCCCCCEEEccCCcCCcCC-
Q 015620 39 LTHKVLDMRMNNFNGK----IPRKFVKSCNLTSLNLNGNRLEGP----------LPPSLVNCHHLEVLNVGNNQINDNF- 103 (403)
Q Consensus 39 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----------~p~~~~~l~~L~~L~l~~n~l~~~~- 103 (403)
.+++.|+|++|.+... +...+...++|+.|+++++..... +...+..+++|+.|++++|.++...
T Consensus 31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 110 (344)
T d2ca6a1 31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 110 (344)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence 6679999999988643 334566789999999998765421 1233567899999999999987643
Q ss_pred ---ChhccCCCCCcEEEcccccccCcCCCCC-----------CccCCCCccEEEccCCccccccchhhhhhhhhhcccCC
Q 015620 104 ---PNWLEILPELQVLILRSNRFWGPIGENT-----------TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN 169 (403)
Q Consensus 104 ---p~~~~~l~~L~~L~l~~n~l~~~~~~~~-----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~ 169 (403)
...+...++|+.|++++|.+.......+ .....+.|+.+++++|.++......+...
T Consensus 111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~--------- 181 (344)
T d2ca6a1 111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT--------- 181 (344)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH---------
T ss_pred cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch---------
Confidence 2344567899999999998632110000 01346789999999998874432222111
Q ss_pred CcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCccccc-----CCcccCCCCCCCEEEecCCCCCCC
Q 015620 170 ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG-----IPEVVGKLNLLKGLNISHNNLTGD 244 (403)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----~p~~~~~l~~L~~L~L~~n~l~~~ 244 (403)
....+.++.|++++|.++.. +...+...++|+.|+|++|.++..
T Consensus 182 -------------------------------l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~ 230 (344)
T d2ca6a1 182 -------------------------------FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 230 (344)
T ss_dssp -------------------------------HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH
T ss_pred -------------------------------hhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccc
Confidence 12256789999999998742 344567789999999999998632
Q ss_pred ----cCccccCCCCCCEEeccCCcCCCCCCcc----cc--CCCCCCEEeCcCCcCc
Q 015620 245 ----IPSSLRNLTEVESLDLSSNMLVGHIPTQ----LT--SLKYLSVLNLSYNQFE 290 (403)
Q Consensus 245 ----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~----~~--~l~~L~~L~L~~N~l~ 290 (403)
+...+...++|+.|++++|.+++..... +. ..+.|++|++++|+++
T Consensus 231 g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~ 286 (344)
T d2ca6a1 231 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 286 (344)
T ss_dssp HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred ccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence 3455678899999999999997643222 22 2467999999999986
No 32
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.34 E-value=6.4e-15 Score=122.95 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=30.8
Q ss_pred cccceEEEcccCcccccCC-cccCCCCCCCEEEecCCCCCCCcCc----------cccCCCCCCEEe
Q 015620 204 LTIFMTIDLSSNKFQGGIP-EVVGKLNLLKGLNISHNNLTGDIPS----------SLRNLTEVESLD 259 (403)
Q Consensus 204 ~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~----------~~~~l~~L~~L~ 259 (403)
+++|+.|++++|+++.... ..+..+++|+.|++++|.+....+. .+..+++|+.||
T Consensus 114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred cccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 3455556666666552211 3456666666666666665432221 145577777776
No 33
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.32 E-value=4.2e-12 Score=101.19 Aligned_cols=106 Identities=19% Similarity=0.086 Sum_probs=84.9
Q ss_pred CEEECcCCcCcccCCccccCCCCcCEEEccCC-cCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015620 42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN-RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120 (403)
Q Consensus 42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 120 (403)
+.++.+++.+. ..|..+..+++|++|++++| .++...+++|.++++|+.|++++|+|+.+.|.+|..+++|++|+|++
T Consensus 11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~ 89 (156)
T d2ifga3 11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (156)
T ss_dssp SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence 56788888877 66778888899999999766 58866667789999999999999999988788899999999999999
Q ss_pred ccccCcCCCCCCccCCCCccEEEccCCcccc
Q 015620 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151 (403)
Q Consensus 121 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 151 (403)
|+++...+..+ ...+|+.|++++|.+.-
T Consensus 90 N~l~~l~~~~~---~~~~l~~L~L~~Np~~C 117 (156)
T d2ifga3 90 NALESLSWKTV---QGLSLQELVLSGNPLHC 117 (156)
T ss_dssp SCCSCCCSTTT---CSCCCCEEECCSSCCCC
T ss_pred CCCcccChhhh---ccccccccccCCCcccC
Confidence 99865443333 33469999999998864
No 34
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.32 E-value=2.9e-12 Score=102.16 Aligned_cols=107 Identities=21% Similarity=0.146 Sum_probs=78.9
Q ss_pred cceEEEcccCcccccCCcccCCCCCCCEEEecCCC-CCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeC
Q 015620 206 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN-LTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNL 284 (403)
Q Consensus 206 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 284 (403)
..+.++.+++.++ ..|..+..+++|++|++++|+ ++...+..|.++++|+.|++++|+|+...+.+|..+++|++|+|
T Consensus 9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 87 (156)
T d2ifga3 9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (156)
T ss_dssp SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence 3456778888777 567777788888888887664 77555667888888888888888888777888888888888888
Q ss_pred cCCcCccCCCCC-CCCCCCCCCcCCCCCCCC
Q 015620 285 SYNQFEGPIPRG-SQFNTFPNDSYVGNSGLC 314 (403)
Q Consensus 285 ~~N~l~~~ip~~-~~~~~~~~~~~~gn~~lc 314 (403)
++|+|+ .+|.+ .....+..+.+.+||+-|
T Consensus 88 s~N~l~-~l~~~~~~~~~l~~L~L~~Np~~C 117 (156)
T d2ifga3 88 SFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117 (156)
T ss_dssp CSSCCS-CCCSTTTCSCCCCEEECCSSCCCC
T ss_pred cCCCCc-ccChhhhccccccccccCCCcccC
Confidence 888888 55554 333345555566665554
No 35
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.32 E-value=2.4e-13 Score=128.06 Aligned_cols=192 Identities=17% Similarity=0.144 Sum_probs=110.9
Q ss_pred ccCCCCCCEEEccCCcCCcC-----CChhccCCCCCcEEEcccccccCcCCCCC--CccCCCCccEEEccCCccccccch
Q 015620 83 LVNCHHLEVLNVGNNQINDN-----FPNWLEILPELQVLILRSNRFWGPIGENT--TIVPFPSLRIIDLSHNEFTGVLLT 155 (403)
Q Consensus 83 ~~~l~~L~~L~l~~n~l~~~-----~p~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~ 155 (403)
+...+.++.+++++|.+... .+........++.+++++|.+........ .+...+.++.+++++|.++.....
T Consensus 222 l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~ 301 (460)
T d1z7xw1 222 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301 (460)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred ccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34578899999999876431 22334456789999999997743221100 124567889999999988643222
Q ss_pred hhhhhhh----hhcccCCCcccccccCCCCCCCcceEEEEEEeccc--hhhhhhcccceEEEcccCccccc----CCccc
Q 015620 156 GYLDNFK----AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID--IKMERILTIFMTIDLSSNKFQGG----IPEVV 225 (403)
Q Consensus 156 ~~~~~l~----~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~ 225 (403)
.+...+. .|+.+...... +. ..... .......++|++|+|++|++++. ++..+
T Consensus 302 ~l~~~l~~~~~~L~~l~l~~~~---l~--------------~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l 364 (460)
T d1z7xw1 302 LLCETLLEPGCQLESLWVKSCS---FT--------------AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 364 (460)
T ss_dssp HHHHHHTSTTCCCCEEECTTSC---CB--------------GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH
T ss_pred hhhccccccccccccccccccc---hh--------------hhhhhhcccccccccchhhhheeeecccCcccchhhhhh
Confidence 2111111 11111110000 00 00000 11223356788888888888643 23333
Q ss_pred C-CCCCCCEEEecCCCCCCC----cCccccCCCCCCEEeccCCcCCCCCCccc----c-CCCCCCEEeCcCCcCcc
Q 015620 226 G-KLNLLKGLNISHNNLTGD----IPSSLRNLTEVESLDLSSNMLVGHIPTQL----T-SLKYLSVLNLSYNQFEG 291 (403)
Q Consensus 226 ~-~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~----~-~l~~L~~L~L~~N~l~~ 291 (403)
. ..+.|++|+|++|+++.. ++..+...++|++|||++|+++......+ . ....|+.|++.+|.+..
T Consensus 365 ~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~ 440 (460)
T d1z7xw1 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440 (460)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred hcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence 3 456788888888888632 34455667888888888888875432222 2 33468888888887753
No 36
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.30 E-value=1.9e-14 Score=119.99 Aligned_cols=76 Identities=25% Similarity=0.293 Sum_probs=48.8
Q ss_pred ccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcC--ccccCCCCCCEEeccCCcCCCCCCcc----------
Q 015620 205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIP--SSLRNLTEVESLDLSSNMLVGHIPTQ---------- 272 (403)
Q Consensus 205 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~n~l~~~~p~~---------- 272 (403)
+.|+.|++++|.++. ++ .+..+++|+.|++++|+++. ++ ..+..+++|+.|++++|++....+..
T Consensus 93 ~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~v 169 (198)
T d1m9la_ 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHCCEEECSEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHH
T ss_pred ccccccccccccccc-cc-cccccccccccccccchhcc-ccccccccCCCccceeecCCCccccCcccccchhhHHHHH
Confidence 456667777777663 22 35566777788888877763 33 35677777888888877775433321
Q ss_pred ccCCCCCCEEe
Q 015620 273 LTSLKYLSVLN 283 (403)
Q Consensus 273 ~~~l~~L~~L~ 283 (403)
+..+++|+.||
T Consensus 170 i~~lp~L~~LD 180 (198)
T d1m9la_ 170 VKRLPNLKKLD 180 (198)
T ss_dssp HHHCSSCCEES
T ss_pred HHHCCCcCEeC
Confidence 45567777766
No 37
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.44 E-value=2.2e-09 Score=85.63 Aligned_cols=88 Identities=23% Similarity=0.198 Sum_probs=51.4
Q ss_pred CccccCCCCcCEEEccCCcCcCC--CCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCC--
Q 015620 56 PRKFVKSCNLTSLNLNGNRLEGP--LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT-- 131 (403)
Q Consensus 56 p~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~-- 131 (403)
+..+..+++|++|++++|+++.. ++..+..+++|+.|++++|.|+...+-.+.....|+.|++++|.+........
T Consensus 58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y 137 (162)
T d1koha1 58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137 (162)
T ss_dssp HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence 33444567777777777777732 12335567777777777777776433333344567777777777654433210
Q ss_pred ---CccCCCCccEEE
Q 015620 132 ---TIVPFPSLRIID 143 (403)
Q Consensus 132 ---~~~~l~~L~~L~ 143 (403)
.+..+|+|+.||
T Consensus 138 ~~~i~~~~P~L~~LD 152 (162)
T d1koha1 138 ISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHTTSTTCCEET
T ss_pred HHHHHHHCCCCCEEC
Confidence 123456666654
No 38
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.17 E-value=1.3e-07 Score=74.94 Aligned_cols=82 Identities=23% Similarity=0.193 Sum_probs=57.9
Q ss_pred hhcccceEEEcccCcccccC--CcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCc-------c
Q 015620 202 RILTIFMTIDLSSNKFQGGI--PEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPT-------Q 272 (403)
Q Consensus 202 ~~~~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-------~ 272 (403)
..++.|++|+|++|+++... +..+..+++|+.|+|++|.++...+-.+.....|+.|++++|.+...... .
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i 141 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence 34778888999999888432 34456788888889998888843332344456788888888888765432 2
Q ss_pred ccCCCCCCEEe
Q 015620 273 LTSLKYLSVLN 283 (403)
Q Consensus 273 ~~~l~~L~~L~ 283 (403)
+..+++|+.||
T Consensus 142 ~~~~P~L~~LD 152 (162)
T d1koha1 142 RERFPKLLRLD 152 (162)
T ss_dssp HTTSTTCCEET
T ss_pred HHHCCCCCEEC
Confidence 56678888776
No 39
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=97.82 E-value=3.7e-06 Score=66.65 Aligned_cols=84 Identities=13% Similarity=0.135 Sum_probs=43.7
Q ss_pred ccceEEEcccCccccc----CCcccCCCCCCCEEEecCCCCCCC----cCccccCCCCCCEEeccCCcCCCC-------C
Q 015620 205 TIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNISHNNLTGD----IPSSLRNLTEVESLDLSSNMLVGH-------I 269 (403)
Q Consensus 205 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~-------~ 269 (403)
+.|+.|+|++|.++.. +...+...+.|++|+|++|.++.. +-..+...++|+.|++++|++... +
T Consensus 44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l 123 (167)
T d1pgva_ 44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 123 (167)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHH
Confidence 3455566666555422 112233445666666666666532 122344556677777766654422 2
Q ss_pred CccccCCCCCCEEeCcCCc
Q 015620 270 PTQLTSLKYLSVLNLSYNQ 288 (403)
Q Consensus 270 p~~~~~l~~L~~L~L~~N~ 288 (403)
...+...+.|+.|+++.+.
T Consensus 124 ~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 124 MMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhCCCccEeeCcCCC
Confidence 3334445667777776554
No 40
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=97.64 E-value=1.7e-05 Score=62.74 Aligned_cols=109 Identities=14% Similarity=0.091 Sum_probs=67.7
Q ss_pred CCCCEEECcCC-cCccc----CCccccCCCCcCEEEccCCcCcC----CCCccccCCCCCCEEEccCCcCCcCC----Ch
Q 015620 39 LTHKVLDMRMN-NFNGK----IPRKFVKSCNLTSLNLNGNRLEG----PLPPSLVNCHHLEVLNVGNNQINDNF----PN 105 (403)
Q Consensus 39 ~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~----p~ 105 (403)
++|+.|+|+++ .+... +-..+...+.|++|+|++|.++. .+...+...+.|++|++++|.++... ..
T Consensus 15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~ 94 (167)
T d1pgva_ 15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 94 (167)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence 56677777763 45422 23345566778888888887763 22334556678888888888876532 23
Q ss_pred hccCCCCCcEEEcccccccCc-------CCCCCCccCCCCccEEEccCCcc
Q 015620 106 WLEILPELQVLILRSNRFWGP-------IGENTTIVPFPSLRIIDLSHNEF 149 (403)
Q Consensus 106 ~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~~~l~~L~~L~l~~n~l 149 (403)
.+...+.|++|++++|..... +.. .+..-++|+.|+++.+..
T Consensus 95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~--~L~~n~sL~~l~l~~~~~ 143 (167)
T d1pgva_ 95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMM--AIEENESLLRVGISFASM 143 (167)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHH--HHHHCSSCCEEECCCCCH
T ss_pred HHHhCCcCCEEECCCCcCCCccHHHHHHHHH--HHHhCCCccEeeCcCCCc
Confidence 455667788888888764321 111 113457788888877654
No 41
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=97.05 E-value=4.8e-05 Score=59.92 Aligned_cols=62 Identities=26% Similarity=0.320 Sum_probs=29.6
Q ss_pred CCCCCCEEEecCCCCCCC----cCccccCCCCCCEEec--cCCcCCCC----CCccccCCCCCCEEeCcCCc
Q 015620 227 KLNLLKGLNISHNNLTGD----IPSSLRNLTEVESLDL--SSNMLVGH----IPTQLTSLKYLSVLNLSYNQ 288 (403)
Q Consensus 227 ~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L--s~n~l~~~----~p~~~~~l~~L~~L~L~~N~ 288 (403)
..+.++.+++++|.+... +...+...++|+.++| ++|.+... +...+...+.|+.|+++.++
T Consensus 72 ~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 72 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred hcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 344555555555555421 1233444555655444 34444321 23334455666666666554
No 42
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=96.80 E-value=0.00026 Score=55.52 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=74.4
Q ss_pred CCCCccEEECCC-CCCCCcCCC-CCCCCCeEeCCCCCCCCEEECcCCcCccc----CCccccCCCCcCEEEccCCcCcCC
Q 015620 5 GIATLYYLDLSN-NFLTNIEYF-PPTNMTQLNFDSNLTHKVLDMRMNNFNGK----IPRKFVKSCNLTSLNLNGNRLEGP 78 (403)
Q Consensus 5 ~~~~L~~L~Ls~-n~l~~~~~~-~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~ 78 (403)
+.+.|++|+|++ +.++...-. -+. .+..|+.|+.|++++|.++.. +-+.+...+.++.+++++|.++..
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~-----al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~ 89 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAE-----ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 89 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHH-----HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHH-----HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence 457888999987 456543210 000 112335568889999988743 233455678999999999988732
Q ss_pred ----CCccccCCCCCCEEEcc--CCcCCc----CCChhccCCCCCcEEEcccccc
Q 015620 79 ----LPPSLVNCHHLEVLNVG--NNQIND----NFPNWLEILPELQVLILRSNRF 123 (403)
Q Consensus 79 ----~p~~~~~l~~L~~L~l~--~n~l~~----~~p~~~~~l~~L~~L~l~~n~l 123 (403)
+...+...++|+.++|+ +|.+.. .+...+...+.|+.|+++.+..
T Consensus 90 g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 90 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence 33456778889886664 566654 2334556788999999977653
Done!