Query 015622
Match_columns 403
No_of_seqs 330 out of 1495
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 15:48:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oqy_A HHR23A, UV excision rep 100.0 4.2E-76 1.4E-80 592.3 29.8 354 1-402 8-368 (368)
2 2qsf_X RAD23, UV excision repa 100.0 2.3E-38 7.9E-43 285.0 11.2 127 274-400 21-171 (171)
3 1pve_A HHR23B, UV excision rep 99.8 7.3E-22 2.5E-26 153.2 4.9 62 275-336 3-64 (72)
4 2f4m_B UV excision repair prot 99.8 5.6E-21 1.9E-25 144.0 8.3 59 276-334 2-60 (61)
5 3m62_B UV excision repair prot 99.8 1.5E-19 5.1E-24 151.3 7.9 78 1-81 2-79 (106)
6 1uel_A HHR23B, UV excision rep 99.8 2.7E-18 9.2E-23 140.5 12.0 78 1-81 1-81 (95)
7 4fbj_B NEDD8; effector-HOST ta 99.8 1.4E-18 4.7E-23 140.3 9.7 80 1-83 1-80 (88)
8 4dwf_A HLA-B-associated transc 99.8 1.3E-18 4.3E-23 140.5 9.3 74 1-78 6-79 (90)
9 3phx_B Ubiquitin-like protein 99.8 1.8E-18 6.2E-23 136.1 9.7 74 1-77 5-78 (79)
10 2wyq_A HHR23A, UV excision rep 99.7 4.1E-18 1.4E-22 135.6 9.7 76 1-79 6-84 (85)
11 3v6c_B Ubiquitin; structural g 99.7 4.5E-18 1.5E-22 137.8 9.3 74 1-77 18-91 (91)
12 2kk8_A Uncharacterized protein 99.7 4E-18 1.4E-22 136.8 8.8 72 1-75 11-83 (84)
13 4a20_A Ubiquitin-like protein 99.7 2.5E-18 8.6E-23 142.2 7.8 74 1-77 20-97 (98)
14 2lxa_A Ubiquitin-like protein 99.7 3.3E-18 1.1E-22 138.5 7.2 73 1-76 2-78 (87)
15 3plu_A Ubiquitin-like modifier 99.7 6.3E-18 2.2E-22 137.9 8.8 71 1-74 22-92 (93)
16 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 1.2E-17 4.2E-22 136.1 10.3 77 1-80 2-78 (96)
17 1wx7_A Ubiquilin 3; ubiquitin- 99.7 1.6E-17 5.5E-22 138.6 11.2 76 1-80 18-93 (106)
18 4hcn_B Polyubiquitin, ubiquiti 99.7 1.4E-17 4.7E-22 137.1 9.7 75 1-78 23-97 (98)
19 1ndd_A NEDD8, protein (ubiquit 99.7 2.1E-17 7.1E-22 128.0 10.1 75 1-78 1-75 (76)
20 3dbh_I NEDD8; cell cycle, acti 99.7 1.1E-17 3.6E-22 133.9 8.5 75 1-78 13-87 (88)
21 1ttn_A DC-UBP, dendritic cell- 99.7 1.5E-17 5E-22 139.0 9.4 77 1-80 24-100 (106)
22 2faz_A Ubiquitin-like containi 99.7 1.8E-17 6.1E-22 129.9 9.0 73 1-76 3-77 (78)
23 1uh6_A Ubiquitin-like 5; beta- 99.7 9.7E-18 3.3E-22 139.0 7.6 71 1-74 29-99 (100)
24 3a9j_A Ubiquitin; protein comp 99.7 3.8E-17 1.3E-21 126.5 10.2 75 1-78 1-75 (76)
25 1wy8_A NP95-like ring finger p 99.7 4.8E-17 1.6E-21 130.8 11.1 76 1-79 8-85 (89)
26 3n3k_B Ubiquitin; hydrolase, p 99.7 2.1E-17 7.1E-22 131.2 8.8 76 1-79 4-79 (85)
27 2dzi_A Ubiquitin-like protein 99.7 2.8E-17 9.5E-22 129.3 9.3 73 1-76 8-80 (81)
28 2hj8_A Interferon-induced 17 k 99.7 2.5E-17 8.4E-22 132.9 8.9 75 1-78 5-79 (88)
29 1wgd_A Homocysteine-responsive 99.7 4E-17 1.4E-21 132.9 10.1 77 1-80 8-90 (93)
30 4eew_A Large proline-rich prot 99.7 2.7E-17 9.4E-22 132.0 8.9 71 1-75 18-88 (88)
31 3mtn_B UBA80, ubcep1, ubiquiti 99.7 3.6E-17 1.2E-21 129.6 9.4 76 1-79 4-79 (85)
32 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 4.7E-17 1.6E-21 130.1 9.9 75 1-78 8-82 (87)
33 2uyz_B Small ubiquitin-related 99.7 2.5E-17 8.5E-22 129.5 8.2 75 1-78 4-78 (79)
34 1wia_A Hypothetical ubiquitin- 99.7 4.9E-17 1.7E-21 132.7 9.7 74 1-80 8-82 (95)
35 1sif_A Ubiquitin; hydrophobic 99.7 4.7E-17 1.6E-21 131.3 9.5 75 1-78 10-84 (88)
36 2kan_A Uncharacterized protein 99.7 7.6E-17 2.6E-21 132.0 10.3 75 1-79 16-91 (94)
37 1v2y_A 3300001G02RIK protein; 99.7 2.6E-17 8.9E-22 137.7 7.6 77 1-80 8-100 (105)
38 1v5o_A 1700011N24RIK protein; 99.7 7.8E-17 2.7E-21 133.7 9.9 76 1-79 8-88 (102)
39 1wyw_B Ubiquitin-like protein 99.7 5.3E-17 1.8E-21 133.5 8.4 75 1-78 22-96 (97)
40 1wju_A NEDD8 ultimate buster-1 99.7 9.7E-17 3.3E-21 132.9 9.6 73 2-78 17-93 (100)
41 2bwf_A Ubiquitin-like protein 99.7 1.2E-16 4.1E-21 124.4 9.6 71 1-75 5-75 (77)
42 1wx8_A Riken cDNA 4931431F19; 99.7 6.2E-17 2.1E-21 132.3 8.0 75 1-79 18-92 (96)
43 3vdz_A Ubiquitin-40S ribosomal 99.7 1.1E-16 3.9E-21 134.7 9.5 75 1-78 36-110 (111)
44 1yx5_B Ubiquitin; proteasome, 99.7 2E-16 6.8E-21 129.8 10.4 75 1-78 1-75 (98)
45 2klc_A Ubiquilin-1; ubiquitin- 99.7 1.8E-16 6.3E-21 131.3 9.9 74 1-78 26-99 (101)
46 3b1l_X E3 ubiquitin-protein li 99.5 4.4E-18 1.5E-22 132.6 0.0 75 1-78 1-75 (76)
47 1yqb_A Ubiquilin 3; structural 99.7 1.4E-16 4.9E-21 131.8 9.1 75 1-79 23-97 (100)
48 1j8c_A Ubiquitin-like protein 99.7 1.9E-16 6.6E-21 136.3 9.9 75 1-79 33-107 (125)
49 2l7r_A Ubiquitin-like protein 99.7 2.3E-16 7.9E-21 128.7 8.9 73 1-78 20-92 (93)
50 1wgh_A Ubiquitin-like 3, HCG-1 99.7 3.9E-16 1.3E-20 132.8 10.6 76 1-76 17-99 (116)
51 1wgg_A Ubiquitin carboxyl-term 99.7 2.4E-16 8.2E-21 129.6 8.6 72 1-77 8-80 (96)
52 3l0w_B Monoubiquitinated proli 99.6 5.9E-16 2E-20 139.9 11.3 77 1-80 1-77 (169)
53 1x1m_A Ubiquitin-like protein 99.6 4.7E-16 1.6E-20 130.1 9.7 74 1-77 13-101 (107)
54 1dv0_A DNA repair protein HHR2 99.6 3.2E-17 1.1E-21 117.8 1.9 47 356-402 1-47 (47)
55 1ify_A HHR23A, UV excision rep 99.6 1.5E-16 5.3E-21 115.2 5.4 49 165-216 1-49 (49)
56 2ojr_A Ubiquitin; lanthide-bin 99.6 9.7E-16 3.3E-20 128.9 10.4 75 1-78 36-110 (111)
57 1v5t_A 8430435I17RIK protein; 99.6 9.4E-16 3.2E-20 124.3 9.5 72 1-76 8-83 (90)
58 1wxv_A BAG-family molecular ch 99.6 1.2E-15 4.3E-20 123.6 10.0 73 1-77 8-86 (92)
59 2fnj_B Transcription elongatio 99.6 5.1E-16 1.7E-20 132.2 7.9 72 1-75 1-80 (118)
60 3m63_B Ubiquitin domain-contai 99.6 2.4E-16 8.2E-21 130.7 5.5 72 1-76 29-100 (101)
61 2kdb_A Homocysteine-responsive 99.6 4.5E-16 1.5E-20 128.8 7.1 71 1-73 24-99 (99)
62 2gow_A HCG-1 protein, ubiquiti 99.6 7.3E-16 2.5E-20 132.8 8.5 74 1-77 18-101 (125)
63 4ajy_B Transcription elongatio 99.6 6.7E-16 2.3E-20 131.2 8.0 73 1-76 1-81 (118)
64 1se9_A Ubiquitin family; ubiqu 99.6 9.5E-16 3.3E-20 131.9 9.0 79 1-79 17-106 (126)
65 3rt3_B Ubiquitin-like protein 99.6 1.1E-15 3.9E-20 135.4 9.7 75 1-78 82-156 (159)
66 2kdi_A Ubiquitin, vacuolar pro 99.6 1.8E-15 6.3E-20 128.0 10.4 76 1-79 10-85 (114)
67 1we6_A Splicing factor, putati 99.6 1.2E-15 4.3E-20 128.2 8.8 76 1-79 28-107 (111)
68 1v86_A DNA segment, CHR 7, way 99.6 9.5E-16 3.3E-20 125.6 7.4 71 1-76 18-88 (95)
69 2kd0_A LRR repeats and ubiquit 99.6 2.6E-15 8.8E-20 120.5 9.5 70 3-75 14-83 (85)
70 3u30_A Ubiquitin, linear DI-ub 99.6 2.2E-15 7.6E-20 135.6 9.8 74 1-77 21-94 (172)
71 3rt3_B Ubiquitin-like protein 99.6 3E-15 1E-19 132.8 9.8 72 1-75 3-76 (159)
72 3q3f_A Ribonuclease/ubiquitin 99.6 2.1E-15 7.2E-20 138.5 8.9 76 1-79 106-181 (189)
73 4dbg_A Ranbp-type and C3HC4-ty 99.6 3.9E-15 1.3E-19 124.3 9.4 73 1-76 25-100 (105)
74 3u5e_m 60S ribosomal protein L 99.6 1.7E-16 5.9E-21 136.9 0.0 76 1-79 1-76 (128)
75 2daf_A FLJ35834 protein; hypot 99.6 8.3E-15 2.8E-19 124.0 9.4 73 2-77 17-90 (118)
76 3b08_A Polyubiquitin-C, ubiqui 99.6 1.2E-14 4.3E-19 126.8 10.3 73 1-76 1-73 (152)
77 1we7_A SF3A1 protein; structur 99.5 1.8E-14 6.2E-19 121.8 10.2 76 1-79 26-111 (115)
78 3u30_A Ubiquitin, linear DI-ub 99.5 8.2E-15 2.8E-19 131.9 8.3 75 1-78 97-171 (172)
79 3b08_A Polyubiquitin-C, ubiqui 99.5 1.6E-14 5.6E-19 126.1 9.9 75 1-78 77-151 (152)
80 3u5c_f 40S ribosomal protein S 99.5 8.7E-16 3E-20 136.5 0.9 77 1-80 1-77 (152)
81 2dzj_A Synaptic glycoprotein S 99.5 9.2E-15 3.2E-19 118.3 6.1 69 1-72 11-85 (88)
82 2dzm_A FAS-associated factor 1 99.5 2.4E-14 8.3E-19 118.6 7.0 71 1-75 9-81 (100)
83 3ai5_A Yeast enhanced green fl 99.5 9.5E-14 3.2E-18 136.2 9.1 74 1-77 234-307 (307)
84 4b6w_A Tubulin-specific chaper 99.4 8E-14 2.8E-18 112.4 6.0 73 2-77 4-85 (86)
85 2kjr_A CG11242; UBL, ubiquitin 99.4 3.9E-13 1.3E-17 110.3 9.4 70 1-73 16-93 (95)
86 1wf9_A NPL4 family protein; be 99.4 1.8E-13 6.1E-18 114.5 7.4 71 1-75 8-94 (107)
87 2lbc_A Ubiquitin carboxyl-term 99.4 7.5E-13 2.6E-17 113.9 10.0 41 361-401 80-121 (126)
88 2kj6_A Tubulin folding cofacto 99.4 7.1E-13 2.4E-17 109.2 8.7 71 2-75 16-95 (97)
89 2xzm_9 RPS31E; ribosome, trans 99.4 3.6E-14 1.2E-18 130.0 0.0 71 1-79 1-71 (189)
90 1v6e_A Cytoskeleton-associated 99.4 1E-12 3.6E-17 107.3 8.3 73 1-76 8-88 (95)
91 2kzr_A Ubiquitin thioesterase 99.4 1E-12 3.6E-17 105.3 7.2 71 1-75 1-77 (86)
92 2io1_B Small ubiquitin-related 99.3 5.4E-12 1.8E-16 103.3 7.9 76 1-79 8-83 (94)
93 3shq_A UBLCP1; phosphatase, hy 99.3 2.4E-12 8.2E-17 127.2 6.6 71 1-75 6-79 (320)
94 2g3q_A Protein YBL047C; endocy 99.3 4.6E-12 1.6E-16 88.9 5.9 40 172-214 4-43 (43)
95 1t0y_A Tubulin folding cofacto 99.3 9.8E-12 3.3E-16 106.3 9.1 74 1-77 7-88 (122)
96 1vg5_A RSGI RUH-014, rhomboid 99.3 4.8E-12 1.7E-16 98.7 6.1 44 169-215 26-69 (73)
97 1vej_A Riken cDNA 4931431F19; 99.3 6.4E-12 2.2E-16 98.2 6.0 45 170-217 27-72 (74)
98 1wm3_A Ubiquitin-like protein 99.2 3E-11 1E-15 93.8 9.0 71 1-74 2-72 (72)
99 2bwb_A Ubiquitin-like protein 99.2 9.7E-12 3.3E-16 88.7 5.5 40 171-213 6-46 (46)
100 4ae4_A Ubiquitin-associated pr 99.2 7.6E-11 2.6E-15 100.3 11.2 40 358-397 75-114 (118)
101 2io0_B Small ubiquitin-related 99.2 4.1E-11 1.4E-15 97.5 9.2 75 1-78 6-80 (91)
102 2knz_A Ubiquilin-4; cytoplasm, 99.2 2.2E-11 7.4E-16 89.4 5.8 43 170-215 9-52 (53)
103 3a4r_A Nfatc2-interacting prot 99.2 9.1E-11 3.1E-15 92.8 9.8 70 1-73 8-78 (79)
104 1veg_A NEDD8 ultimate buster-1 99.2 2.6E-11 8.9E-16 96.7 6.0 44 172-218 29-75 (83)
105 2d07_B Ubiquitin-like protein 99.2 8.8E-11 3E-15 95.8 8.6 74 1-77 18-91 (93)
106 2g3q_A Protein YBL047C; endocy 99.2 3.6E-11 1.2E-15 84.3 5.3 38 360-397 5-42 (43)
107 1wz0_A Ubiquitin-like protein 99.2 1E-10 3.4E-15 97.5 8.8 75 1-78 25-99 (104)
108 1wji_A Tudor domain containing 99.1 4.5E-11 1.6E-15 90.8 5.8 42 172-216 9-50 (63)
109 2jy5_A Ubiquilin-1; UBA, alter 99.1 5.3E-11 1.8E-15 87.0 5.6 41 170-213 10-51 (52)
110 2k8h_A Small ubiquitin protein 99.1 1.7E-10 5.9E-15 97.0 7.7 75 1-78 27-101 (110)
111 1wr1_B Ubiquitin-like protein 99.1 8.9E-11 3.1E-15 87.6 5.2 41 170-213 15-56 (58)
112 2dna_A Unnamed protein product 99.1 1.3E-10 4.4E-15 88.9 5.6 45 170-217 17-62 (67)
113 2dak_A Ubiquitin carboxyl-term 99.1 7.2E-11 2.4E-15 89.7 3.9 43 172-217 9-51 (63)
114 2eke_C Ubiquitin-like protein 99.1 3.1E-10 1.1E-14 94.8 7.9 73 1-77 32-104 (106)
115 1wji_A Tudor domain containing 99.0 1.6E-10 5.5E-15 87.7 5.1 43 359-401 9-51 (63)
116 1wiv_A UBP14, ubiquitin-specif 99.0 2.1E-10 7E-15 89.6 5.3 41 172-215 29-69 (73)
117 1z96_A DNA-damage, UBA-domain 99.0 2.5E-10 8.4E-15 78.5 5.0 39 170-211 2-40 (40)
118 1wjn_A Tubulin-folding protein 99.0 6.2E-10 2.1E-14 91.0 8.3 72 2-76 11-93 (97)
119 2crn_A Ubash3A protein; compac 99.0 2E-10 6.7E-15 87.5 3.9 44 171-217 8-52 (64)
120 2dag_A Ubiquitin carboxyl-term 99.0 4.7E-10 1.6E-14 87.8 5.8 43 172-217 9-52 (74)
121 1vg5_A RSGI RUH-014, rhomboid 99.0 3.8E-10 1.3E-14 88.0 5.0 47 353-399 23-69 (73)
122 2dkl_A Trinucleotide repeat co 99.0 7.2E-10 2.5E-14 89.0 6.2 44 359-402 21-64 (85)
123 2cpw_A CBL-interacting protein 99.0 6E-10 2.1E-14 84.8 5.5 42 361-402 21-63 (64)
124 1wgn_A UBAP1, ubiquitin associ 99.0 6.3E-10 2.2E-14 82.8 5.2 48 352-399 12-59 (63)
125 2ekk_A UBA domain from E3 ubiq 99.0 5.1E-10 1.7E-14 80.0 4.5 38 172-213 9-46 (47)
126 2cpw_A CBL-interacting protein 99.0 4.2E-10 1.4E-14 85.7 4.3 40 173-215 20-60 (64)
127 1whc_A RSGI RUH-027, UBA/UBX 3 99.0 4.2E-10 1.4E-14 85.7 4.2 42 173-217 10-52 (64)
128 1ify_A HHR23A, UV excision rep 98.9 7.7E-10 2.6E-14 79.8 5.2 42 357-398 6-47 (49)
129 1z96_A DNA-damage, UBA-domain 98.9 8.1E-10 2.8E-14 75.9 5.0 39 357-395 2-40 (40)
130 2dag_A Ubiquitin carboxyl-term 98.9 8.3E-10 2.8E-14 86.4 5.2 44 359-402 9-53 (74)
131 2dai_A Ubadc1, ubiquitin assoc 98.9 8E-10 2.7E-14 88.4 4.9 44 359-402 29-72 (83)
132 1whc_A RSGI RUH-027, UBA/UBX 3 98.9 1.1E-09 3.9E-14 83.3 5.3 42 361-402 11-53 (64)
133 1wiv_A UBP14, ubiquitin-specif 98.9 1.3E-09 4.4E-14 85.1 5.1 46 356-401 26-71 (73)
134 1wgn_A UBAP1, ubiquitin associ 98.9 1.6E-09 5.3E-14 80.7 4.9 43 167-213 15-57 (63)
135 2dak_A Ubiquitin carboxyl-term 98.9 6.5E-10 2.2E-14 84.3 2.8 43 359-401 9-51 (63)
136 2jy5_A Ubiquilin-1; UBA, alter 98.9 1.7E-09 5.8E-14 79.0 4.9 38 361-398 14-52 (52)
137 2dai_A Ubadc1, ubiquitin assoc 98.9 2.1E-09 7.1E-14 85.9 5.6 42 172-216 29-70 (83)
138 2crn_A Ubash3A protein; compac 98.9 2.2E-09 7.6E-14 81.7 5.3 42 361-402 11-53 (64)
139 1vek_A UBP14, ubiquitin-specif 98.9 1.9E-09 6.5E-14 86.4 5.0 43 172-217 29-72 (84)
140 2ooa_A E3 ubiquitin-protein li 98.8 2.9E-09 9.8E-14 76.7 5.2 37 361-397 13-49 (52)
141 2ekk_A UBA domain from E3 ubiq 98.8 2.6E-09 9.1E-14 76.2 4.1 38 360-398 10-47 (47)
142 2knz_A Ubiquilin-4; cytoplasm, 98.8 5.5E-09 1.9E-13 76.5 5.6 38 361-398 13-51 (53)
143 2lbc_A Ubiquitin carboxyl-term 98.8 6.1E-09 2.1E-13 89.4 5.7 41 172-215 78-118 (126)
144 1vek_A UBP14, ubiquitin-specif 98.8 6E-09 2.1E-13 83.4 5.2 44 359-402 29-73 (84)
145 1veg_A NEDD8 ultimate buster-1 98.8 7.7E-09 2.6E-13 82.4 5.6 41 360-400 30-70 (83)
146 2d9s_A CBL E3 ubiquitin protei 98.8 6.6E-09 2.3E-13 75.1 4.7 37 361-397 11-47 (53)
147 2dah_A Ubiquilin-3; UBA domain 98.8 6.5E-09 2.2E-13 76.5 4.8 41 171-214 8-49 (54)
148 2cwb_A Chimera of immunoglobul 98.7 1.1E-08 3.6E-13 85.5 5.9 42 171-215 65-107 (108)
149 3kyd_D Small ubiquitin-related 98.7 4.9E-08 1.7E-12 82.5 9.5 73 1-76 41-113 (115)
150 2dkl_A Trinucleotide repeat co 98.7 1.8E-08 6.2E-13 80.8 5.5 38 173-213 22-59 (85)
151 2bwb_A Ubiquitin-like protein 98.7 2.4E-08 8.2E-13 71.0 5.4 37 361-397 9-46 (46)
152 1vej_A Riken cDNA 4931431F19; 98.6 4.2E-08 1.4E-12 76.6 5.9 42 360-401 30-72 (74)
153 2dah_A Ubiquilin-3; UBA domain 98.6 5E-08 1.7E-12 71.7 5.6 41 360-400 10-51 (54)
154 1wr1_B Ubiquitin-like protein 98.6 4.3E-08 1.5E-12 73.1 5.2 38 361-398 19-57 (58)
155 1dv0_A DNA repair protein HHR2 98.6 9.3E-09 3.2E-13 73.5 1.3 42 170-214 2-43 (47)
156 2juj_A E3 ubiquitin-protein li 98.5 9.1E-08 3.1E-12 69.3 4.9 38 360-397 8-45 (56)
157 2pjh_A Protein NPL4, nuclear p 98.5 7.1E-08 2.4E-12 76.4 4.4 69 1-73 5-78 (80)
158 3pge_A SUMO-modified prolifera 98.5 4.2E-07 1.4E-11 83.9 9.1 76 1-80 30-105 (200)
159 2dna_A Unnamed protein product 98.5 2E-07 7E-12 71.2 5.6 47 355-401 13-62 (67)
160 2ooa_A E3 ubiquitin-protein li 98.5 2E-07 6.8E-12 67.1 5.2 38 172-212 11-48 (52)
161 4ae4_A Ubiquitin-associated pr 98.4 1.6E-07 5.5E-12 79.8 4.9 39 172-213 76-114 (118)
162 3tix_A Ubiquitin-like protein 98.4 2.9E-07 9.8E-12 84.0 6.8 74 1-78 58-131 (207)
163 3k9o_A Ubiquitin-conjugating e 98.4 1.9E-07 6.5E-12 86.2 5.5 75 311-397 127-201 (201)
164 2oo9_A E3 ubiquitin-protein li 98.4 3.2E-07 1.1E-11 64.1 4.9 37 361-397 6-42 (46)
165 2d9s_A CBL E3 ubiquitin protei 98.4 3.5E-07 1.2E-11 66.2 5.1 37 173-212 10-46 (53)
166 2oo9_A E3 ubiquitin-protein li 98.4 6.2E-07 2.1E-11 62.7 5.7 41 169-212 1-41 (46)
167 2juj_A E3 ubiquitin-protein li 98.2 1.1E-06 3.8E-11 63.7 4.9 38 172-212 7-44 (56)
168 2cwb_A Chimera of immunoglobul 98.2 9.9E-07 3.4E-11 73.6 5.3 39 360-398 67-106 (108)
169 3e46_A Ubiquitin-conjugating e 98.2 1.1E-06 3.9E-11 83.9 5.8 75 311-397 179-253 (253)
170 1wj7_A Hypothetical protein (R 98.2 2E-06 6.8E-11 71.0 6.4 41 359-399 39-80 (104)
171 3goe_A DNA repair protein RAD6 98.2 9.3E-06 3.2E-10 63.6 9.3 70 2-74 11-81 (82)
172 3k9o_A Ubiquitin-conjugating e 98.2 1.4E-06 4.9E-11 80.3 5.4 43 167-212 158-200 (201)
173 3v7o_A Minor nucleoprotein VP3 98.1 3.4E-07 1.2E-11 84.6 0.0 74 1-78 22-95 (227)
174 1wj7_A Hypothetical protein (R 98.1 4E-06 1.4E-10 69.2 6.0 44 170-216 37-81 (104)
175 2jxx_A Nfatc2-interacting prot 98.1 1.8E-05 6.2E-10 64.8 9.2 70 1-73 26-96 (97)
176 2cp8_A NEXT to BRCA1 gene 1 pr 98.0 3.7E-06 1.3E-10 61.4 3.7 46 356-401 4-52 (54)
177 1oqy_A HHR23A, UV excision rep 97.9 5E-06 1.7E-10 83.4 3.8 43 359-401 168-210 (368)
178 4efo_A Serine/threonine-protei 97.8 6.8E-05 2.3E-09 61.0 7.9 69 3-74 15-87 (94)
179 2qsf_X RAD23, UV excision repa 97.8 2.2E-05 7.4E-10 70.6 5.0 42 169-213 127-168 (171)
180 3uf8_A Ubiquitin-like protein 97.8 5.2E-05 1.8E-09 70.2 7.7 73 2-78 23-95 (209)
181 2cp8_A NEXT to BRCA1 gene 1 pr 97.8 2.4E-05 8.3E-10 57.1 4.3 41 170-213 7-48 (54)
182 2l76_A Nfatc2-interacting prot 97.7 0.00015 5E-09 59.0 8.7 72 1-76 22-93 (95)
183 2bps_A YUKD protein; ubiquitin 97.7 6.4E-05 2.2E-09 59.6 6.2 71 2-72 6-80 (81)
184 2al3_A TUG long isoform; TUG U 97.5 0.0003 1E-08 56.7 8.2 73 1-76 10-82 (90)
185 2kc2_A Talin-1, F1; FERM, adhe 97.5 0.00016 5.5E-09 62.0 7.1 69 2-73 13-120 (128)
186 3ix6_A TS, tsase, thymidylate 97.5 1.2E-05 4.1E-10 80.1 0.0 74 1-78 22-95 (360)
187 4da1_A Protein phosphatase 1K, 97.3 3.6E-05 1.2E-09 77.4 0.0 73 2-78 32-104 (389)
188 2cos_A Serine/threonine protei 97.3 0.00032 1.1E-08 50.8 4.8 42 172-216 9-52 (54)
189 2dzk_A UBX domain-containing p 97.2 0.003 1E-07 52.4 10.7 70 2-74 15-89 (109)
190 3qx1_A FAS-associated factor 1 97.2 0.0014 4.8E-08 51.7 8.2 68 2-73 9-81 (84)
191 3e46_A Ubiquitin-conjugating e 97.1 0.00043 1.5E-08 66.0 5.6 44 166-212 209-252 (253)
192 3ihp_A Ubiquitin carboxyl-term 97.0 0.00084 2.9E-08 74.1 6.9 40 361-400 722-761 (854)
193 2pwq_A Ubiquitin conjugating e 96.9 0.00017 5.7E-09 67.3 0.2 73 312-397 143-215 (216)
194 1wj4_A KIAA0794 protein; UBX d 96.4 0.0071 2.4E-07 51.4 7.3 69 2-74 45-118 (124)
195 1wgl_A TOLL-interacting protei 96.3 0.0048 1.6E-07 45.8 4.9 40 361-400 11-52 (59)
196 2cr5_A Reproduction 8; UBX dom 96.1 0.036 1.2E-06 45.8 9.7 69 2-74 25-97 (109)
197 1tte_A Ubiquitin-conjugating e 95.9 0.0052 1.8E-07 57.1 4.3 76 311-388 122-198 (215)
198 1s3s_G P47 protein; AAA ATPase 95.9 0.025 8.4E-07 48.2 8.0 65 2-68 54-121 (127)
199 2dam_A ETEA protein; KIAA0887, 95.7 0.025 8.4E-07 42.9 6.3 46 353-398 12-59 (67)
200 2dal_A Protein KIAA0794; FAS a 95.5 0.027 9.3E-07 42.0 5.9 47 352-398 8-55 (62)
201 1wgl_A TOLL-interacting protei 95.5 0.013 4.5E-07 43.4 4.0 41 172-213 9-49 (59)
202 2cos_A Serine/threonine protei 95.3 0.014 4.8E-07 42.2 3.6 41 358-398 8-49 (54)
203 2pwq_A Ubiquitin conjugating e 95.1 0.0035 1.2E-07 58.2 0.0 41 171-214 176-216 (216)
204 1v92_A NSFL1 cofactor P47; 3-h 95.0 0.036 1.2E-06 38.3 5.0 40 359-398 5-45 (46)
205 2daj_A KIAA0977 protein, COBL- 95.0 0.084 2.9E-06 41.8 7.4 70 2-77 12-84 (91)
206 2l32_A Small archaeal modifier 94.7 0.09 3.1E-06 40.5 6.9 60 1-73 1-60 (74)
207 2dhy_A CUE domain-containing p 94.5 0.065 2.2E-06 40.7 5.6 44 168-212 14-57 (67)
208 1otr_A Protein CUE2; protein-p 94.5 0.044 1.5E-06 39.1 4.3 41 172-213 4-44 (49)
209 4e71_A Plexin-B2, MM1; transme 94.2 0.24 8.3E-06 41.2 8.9 64 10-74 23-109 (111)
210 2dhy_A CUE domain-containing p 94.1 0.07 2.4E-06 40.5 5.0 38 360-397 19-58 (67)
211 4fp9_B Mterf domain-containing 94.0 0.37 1.3E-05 47.4 11.4 93 289-398 94-195 (335)
212 2di0_A Activating signal coint 94.0 0.15 5E-06 39.1 6.6 52 167-219 8-60 (71)
213 3ihp_A Ubiquitin carboxyl-term 94.0 0.039 1.3E-06 60.8 4.8 41 170-213 718-758 (854)
214 1ryj_A Unknown; beta/alpha pro 93.5 0.4 1.4E-05 36.1 8.3 61 1-74 5-65 (70)
215 1otr_A Protein CUE2; protein-p 93.3 0.092 3.2E-06 37.4 4.1 39 360-398 5-45 (49)
216 2r2o_A Plexin-B1; effector dom 93.2 0.29 9.9E-06 42.1 7.9 65 11-76 41-129 (138)
217 2cp9_A EF-TS, EF-TSMT, elongat 93.1 0.15 5.1E-06 38.3 5.1 36 174-212 11-47 (64)
218 2cp9_A EF-TS, EF-TSMT, elongat 92.8 0.16 5.3E-06 38.2 4.9 41 354-397 7-48 (64)
219 4a3p_A Ubiquitin carboxyl-term 92.7 0.24 8.2E-06 45.6 7.3 61 13-76 142-209 (217)
220 3jyu_A Ubiquitin carboxyl-term 92.6 0.55 1.9E-05 43.6 9.7 61 13-76 154-221 (231)
221 1vjk_A Molybdopterin convertin 92.0 0.85 2.9E-05 36.4 8.9 68 1-73 10-92 (98)
222 3rpf_C Molybdopterin convertin 90.9 0.66 2.2E-05 35.1 6.7 65 1-73 1-68 (74)
223 3h6n_A Plexin-D1; structural g 89.6 1.5 5.3E-05 37.1 8.5 65 10-75 16-104 (127)
224 2dzl_A Protein FAM100B; UBA-li 89.4 0.62 2.1E-05 35.0 5.4 42 358-399 16-58 (66)
225 3ivf_A Talin-1; FERM domain, c 89.4 0.99 3.4E-05 44.4 8.4 72 2-74 5-83 (371)
226 4e74_A Plexin-A4; RBD, structu 89.3 1 3.5E-05 37.7 7.1 64 12-76 28-115 (117)
227 1pve_A HHR23B, UV excision rep 89.2 0.18 6.3E-06 38.7 2.3 41 277-322 18-61 (72)
228 3m66_A Mterf3, mterf domain-co 88.9 1.6 5.5E-05 40.8 9.1 41 173-216 6-55 (270)
229 2qho_B E3 ubiquitin-protein li 87.9 0.96 3.3E-05 32.0 5.0 39 357-397 9-49 (53)
230 1ip9_A BEM1 protein; ubiquitin 87.5 0.91 3.1E-05 35.8 5.3 65 2-73 14-83 (85)
231 2f4m_B UV excision repair prot 87.3 0.28 9.4E-06 36.5 2.1 39 278-321 17-58 (61)
232 3po0_A Small archaeal modifier 87.2 4.9 0.00017 31.0 9.6 56 11-73 18-83 (89)
233 1ufz_A Hypothetical protein BA 86.5 1.3 4.6E-05 34.7 5.7 45 353-397 24-75 (83)
234 2di0_A Activating signal coint 86.4 1.3 4.4E-05 33.9 5.4 44 355-398 8-54 (71)
235 1p3q_Q VPS9P, vacuolar protein 86.0 0.33 1.1E-05 35.2 1.9 39 358-396 11-51 (54)
236 3e21_A HFAF1, FAS-associated f 85.6 0.6 2E-05 32.6 3.0 36 360-395 6-43 (45)
237 1oey_A P67-PHOX, neutrophil cy 85.3 1.3 4.6E-05 34.8 5.3 45 1-50 6-50 (83)
238 1wgk_A Riken cDNA 2900073H19 p 85.2 1.1 3.9E-05 37.1 5.1 69 1-74 12-103 (114)
239 2juo_A GA-binding protein alph 85.2 2.4 8.2E-05 33.4 6.5 61 13-76 5-65 (89)
240 1tyg_B YJBS; alpha beta barrel 85.2 1.4 4.7E-05 34.9 5.3 57 8-74 25-82 (87)
241 3mva_O Transcription terminati 84.8 1.3 4.5E-05 43.1 6.3 41 172-215 19-64 (343)
242 4dbg_B Ring finger protein 31; 83.0 0.93 3.2E-05 39.9 3.7 38 171-210 101-138 (162)
243 1q02_A Sequestosome 1; helical 82.4 1.3 4.3E-05 31.8 3.6 37 359-395 10-48 (52)
244 4dbg_B Ring finger protein 31; 81.9 1.6 5.4E-05 38.4 4.8 37 358-394 101-138 (162)
245 3dwg_C 9.5 kDa culture filtrat 81.2 4.4 0.00015 31.6 6.9 72 1-74 1-88 (93)
246 2k9x_A Tburm1, uncharacterized 81.1 0.58 2E-05 38.7 1.7 69 1-74 5-97 (110)
247 2kl0_A Putative thiamin biosyn 80.8 2 6.8E-05 32.6 4.5 60 1-74 1-60 (73)
248 1q02_A Sequestosome 1; helical 80.3 1 3.5E-05 32.3 2.5 38 170-210 8-47 (52)
249 2k5p_A THis protein, thiamine- 80.1 1.9 6.6E-05 33.2 4.3 63 1-74 1-64 (78)
250 1f0z_A THis protein; ubiquitin 80.0 2.8 9.7E-05 30.8 5.1 61 1-74 1-61 (66)
251 1vd2_A Protein kinase C, IOTA 80.0 4.9 0.00017 31.9 6.7 69 2-74 8-86 (89)
252 1ef1_A Moesin; membrane, FERM 79.5 6.6 0.00022 36.9 8.8 73 1-77 2-80 (294)
253 3onh_A Ubiquitin-activating en 79.0 4.8 0.00016 34.1 6.7 51 20-74 19-78 (127)
254 2llw_A Heat shock protein STI1 79.0 2 7E-05 32.7 4.0 27 296-324 27-53 (71)
255 1h4r_A Merlin; FERM, neurofibr 78.8 7.4 0.00025 37.0 9.0 73 1-77 23-100 (314)
256 2qjl_A URM1, ubiquitin-related 78.5 3.7 0.00013 32.7 5.7 35 1-35 2-46 (99)
257 1tr8_A Conserved protein (MTH1 78.5 2.7 9.3E-05 34.2 4.9 38 354-394 63-101 (102)
258 2kmm_A Guanosine-3',5'-BIS(dip 77.7 4.1 0.00014 30.0 5.4 62 1-74 1-62 (73)
259 1ixs_A Holliday junction DNA h 76.2 2.7 9.3E-05 31.0 3.9 28 169-199 14-41 (62)
260 2lnm_A Protein TIC 40, chlorop 75.6 2.7 9.3E-05 30.8 3.8 36 280-320 16-51 (62)
261 2l52_A Methanosarcina acetivor 75.2 11 0.00038 29.8 7.7 67 1-73 4-93 (99)
262 3hm6_X Plexin-B1; structural g 75.0 7.4 0.00025 41.2 8.2 64 12-76 275-362 (644)
263 3ig3_A Plxna3 protein; plexin 74.3 10 0.00035 40.0 9.0 65 11-76 247-335 (627)
264 1tte_A Ubiquitin-conjugating e 73.4 2.1 7.3E-05 39.3 3.3 24 173-199 170-193 (215)
265 2q5w_D Molybdopterin convertin 72.2 6.4 0.00022 29.3 5.3 54 11-73 16-71 (77)
266 2i1j_A Moesin; FERM, coiled-co 72.0 10 0.00035 39.8 8.5 74 1-78 5-84 (575)
267 3ivf_A Talin-1; FERM domain, c 71.1 13 0.00044 36.2 8.7 71 2-74 87-166 (371)
268 1fm0_D Molybdopterin convertin 71.1 22 0.00075 26.5 8.2 56 12-73 18-75 (81)
269 1wgr_A Growth factor receptor- 70.2 15 0.00053 29.6 7.4 74 3-78 12-95 (100)
270 3qij_A Protein 4.1; cytoskelet 69.1 15 0.00051 34.8 8.4 70 1-73 18-93 (296)
271 3kuz_A Plexin-C1; structural g 68.9 16 0.00053 30.9 7.3 60 11-73 39-124 (126)
272 1ufz_A Hypothetical protein BA 67.6 11 0.00039 29.4 5.8 41 173-213 35-75 (83)
273 2cu3_A Unknown function protei 67.0 7.2 0.00025 28.3 4.4 56 8-74 4-59 (64)
274 1aip_C EF-TS, elongation facto 65.8 7.1 0.00024 35.4 5.0 37 173-212 4-41 (196)
275 4eut_A Serine/threonine-protei 65.7 21 0.00071 34.5 8.8 51 11-64 322-374 (396)
276 1p3q_Q VPS9P, vacuolar protein 65.6 2.6 9E-05 30.5 1.6 42 170-212 10-51 (54)
277 1y8x_B Ubiquitin-activating en 65.5 5.7 0.00019 32.1 3.8 59 12-73 6-82 (98)
278 2ns5_A Partitioning-defective 65.3 47 0.0016 26.0 9.0 72 1-74 3-81 (85)
279 1xb2_B EF-TS, elongation facto 64.0 7.2 0.00025 37.5 5.0 36 174-212 6-42 (291)
280 1vdl_A Ubiquitin carboxyl-term 61.1 13 0.00045 28.5 4.8 37 362-398 27-65 (80)
281 1ixs_A Holliday junction DNA h 58.7 12 0.0004 27.5 4.2 25 359-383 17-41 (62)
282 2kvr_A Ubiquitin carboxyl-term 58.1 7.6 0.00026 32.8 3.5 32 14-48 59-90 (130)
283 1tr8_A Conserved protein (MTH1 57.9 11 0.00038 30.5 4.4 35 173-210 66-101 (102)
284 3qa8_A MGC80376 protein; kinas 56.8 11 0.00038 40.3 5.4 50 10-62 321-371 (676)
285 2lva_A Ubiquitin carboxyl-term 60.0 2.5 8.7E-05 35.5 0.0 36 362-397 21-58 (129)
286 2g1e_A Hypothetical protein TA 52.6 43 0.0015 25.3 6.9 58 15-73 19-84 (90)
287 1v92_A NSFL1 cofactor P47; 3-h 52.5 30 0.001 23.1 5.2 37 172-211 5-42 (46)
288 1b4u_A LIGA, LIGB, protocatech 51.8 27 0.00093 29.9 5.9 48 301-373 37-89 (139)
289 2llv_A Heat shock protein STI1 51.5 7.7 0.00026 29.2 2.2 32 283-319 30-62 (71)
290 4fp9_B Mterf domain-containing 50.5 27 0.00093 34.0 6.6 32 352-383 105-137 (335)
291 3m66_A Mterf3, mterf domain-co 50.4 35 0.0012 31.5 7.1 25 171-198 40-64 (270)
292 1wgy_A RAP guanine nucleotide 49.9 58 0.002 26.4 7.4 66 5-75 14-86 (104)
293 1rws_A Hypothetical protein PF 48.3 6.4 0.00022 29.8 1.3 48 14-73 24-71 (77)
294 2inc_C TOUB protein; DIIRON, 4 46.3 86 0.0029 24.4 7.4 61 13-74 15-81 (83)
295 2kmc_A Fermitin family homolog 46.2 1.2E+02 0.0039 24.5 9.0 71 2-75 21-99 (102)
296 4a6q_A Histone deacetylase com 45.0 82 0.0028 27.0 7.9 63 13-77 56-140 (143)
297 2lnm_A Protein TIC 40, chlorop 44.5 14 0.00046 27.0 2.6 41 278-324 5-45 (62)
298 3ge3_C Toluene-4-monooxygenase 44.5 69 0.0023 25.0 6.6 61 13-74 17-82 (84)
299 3q8g_A CRAL-TRIO domain-contai 44.3 31 0.0011 33.0 5.8 44 352-395 32-83 (320)
300 4g3o_A E3 ubiquitin-protein li 44.0 51 0.0017 24.0 5.5 47 165-213 10-56 (58)
301 2ylm_A Ubiquitin carboxyl-term 44.0 64 0.0022 33.3 8.5 58 12-72 353-418 (530)
302 1zoq_C CREB-binding protein, i 43.9 13 0.00044 25.7 2.1 24 287-310 19-42 (47)
303 2dal_A Protein KIAA0794; FAS a 43.7 35 0.0012 24.8 4.7 39 171-212 14-53 (62)
304 3e7l_A Transcriptional regulat 42.4 14 0.00047 26.7 2.3 24 371-394 19-42 (63)
305 2eel_A Cell death activator CI 41.7 1.3E+02 0.0044 23.8 8.5 50 21-76 28-79 (91)
306 3hvz_A Uncharacterized protein 41.3 63 0.0022 24.5 6.1 62 2-75 7-68 (78)
307 4gdk_A Ubiquitin-like protein 41.1 81 0.0028 24.8 6.8 60 14-76 23-86 (91)
308 1oai_A Nuclear RNA export fact 40.8 60 0.0021 23.4 5.6 40 354-393 2-42 (59)
309 1umq_A Photosynthetic apparatu 40.3 15 0.00051 28.4 2.3 23 372-394 42-64 (81)
310 3w1s_C Ubiquitin-like protein 40.0 1.3E+02 0.0044 23.6 7.8 57 14-75 26-85 (91)
311 1q1o_A Cell division control p 39.6 32 0.0011 27.7 4.2 26 10-35 22-47 (98)
312 3e7l_A Transcriptional regulat 38.7 33 0.0011 24.5 3.9 41 165-215 5-45 (63)
313 1ltl_A DNA replication initiat 38.6 22 0.00074 33.5 3.7 55 278-332 19-75 (279)
314 3rui_B Autophagy-related prote 38.1 1.3E+02 0.0045 24.7 8.0 59 15-76 51-113 (118)
315 2zjd_A Microtubule-associated 38.0 78 0.0027 26.6 6.7 58 15-75 57-119 (130)
316 3h9d_A ATG8, microtubule-assoc 37.8 1.1E+02 0.0039 25.2 7.5 59 15-76 52-114 (119)
317 2c7h_A RBBP6, retinoblastoma-b 37.6 51 0.0017 25.9 5.0 34 2-35 8-43 (86)
318 2llw_A Heat shock protein STI1 37.3 57 0.0019 24.5 5.1 36 280-320 24-59 (71)
319 2hj1_A Hypothetical protein; s 36.9 46 0.0016 26.5 4.8 59 11-74 26-84 (97)
320 3m95_A Autophagy related prote 36.3 1.1E+02 0.0036 25.6 7.2 59 15-76 57-119 (125)
321 2l9b_A MRNA 3'-END-processing 36.3 32 0.0011 28.3 3.8 29 287-319 58-86 (109)
322 2r2q_A Gamma-aminobutyric acid 36.1 1.1E+02 0.0037 24.7 7.1 57 15-74 48-108 (110)
323 1eo6_A GATE-16, golgi-associat 36.1 88 0.003 25.6 6.6 59 15-76 49-111 (117)
324 2kna_A Baculoviral IAP repeat- 35.9 37 0.0013 27.4 4.1 36 175-213 30-72 (104)
325 3au4_A Myosin-X; protein-prote 35.5 61 0.0021 33.2 6.8 35 1-35 217-251 (555)
326 3u52_E Phenol hydroxylase comp 35.1 1.2E+02 0.004 25.2 7.1 61 13-73 40-107 (119)
327 1f2r_I Inhibitor of caspase-ac 31.5 62 0.0021 26.1 4.7 49 21-75 37-89 (100)
328 2zc2_A DNAD-like replication p 30.3 53 0.0018 24.4 4.0 30 354-383 17-47 (78)
329 2dhz_A RAP guanine nucleotide 29.5 1.2E+02 0.004 25.2 6.2 63 8-75 17-92 (120)
330 1aua_A Phosphatidylinositol tr 29.0 66 0.0022 29.9 5.3 44 352-395 23-74 (296)
331 3k6g_A Telomeric repeat-bindin 28.9 85 0.0029 25.5 5.0 40 358-397 9-52 (111)
332 1v8c_A MOAD related protein; r 28.6 1.4E+02 0.0047 25.9 7.0 56 14-73 17-81 (168)
333 2dam_A ETEA protein; KIAA0887, 27.8 1.5E+02 0.0051 21.8 6.0 43 170-213 16-58 (67)
334 2jp7_A MRNA export factor MEX6 27.7 92 0.0031 22.4 4.6 39 355-393 2-41 (57)
335 2vl6_A SSO MCM N-TER, minichro 27.3 19 0.00066 33.5 1.2 53 279-331 16-75 (268)
336 3eye_A PTS system N-acetylgala 27.0 62 0.0021 28.4 4.4 22 351-372 123-144 (168)
337 3cz6_A DNA-binding protein RAP 27.0 57 0.0019 28.7 4.0 45 170-217 61-112 (168)
338 1ntc_A Protein (nitrogen regul 26.9 20 0.00069 27.8 1.0 24 371-394 51-74 (91)
339 2ztd_A Holliday junction ATP-d 26.9 37 0.0013 31.0 2.9 26 172-200 164-189 (212)
340 1wz3_A Autophagy 12B, ATG12B, 26.5 1.2E+02 0.0041 24.0 5.6 57 14-76 31-91 (96)
341 2nvu_B Maltose binding protein 26.1 95 0.0032 33.3 6.5 60 13-73 714-789 (805)
342 3pvl_A Myosin VIIA isoform 1; 25.7 1.2E+02 0.004 32.2 7.0 46 1-48 264-309 (655)
343 2kkc_A Sequestosome-1; P62, PB 25.6 1.4E+02 0.005 23.9 6.0 54 21-76 42-101 (102)
344 4gmv_A RAS-associated and plec 25.6 2.4E+02 0.0082 26.6 8.6 69 3-73 34-112 (281)
345 1oai_A Nuclear RNA export fact 25.2 1.3E+02 0.0045 21.6 5.1 45 170-217 5-55 (59)
346 1l6x_B Minimized B-domain of p 25.1 90 0.0031 20.2 3.6 26 323-368 6-32 (34)
347 2h5n_A Hypothetical protein PG 24.9 1.3E+02 0.0046 24.7 6.0 39 354-392 34-74 (133)
348 3hrd_D Nicotinate dehydrogenas 24.6 52 0.0018 28.6 3.4 27 1-28 4-30 (160)
349 2ylm_A Ubiquitin carboxyl-term 24.5 65 0.0022 33.2 4.7 70 3-75 133-217 (530)
350 1n62_A Carbon monoxide dehydro 24.4 54 0.0019 28.6 3.5 27 2-29 5-31 (166)
351 3kxe_C Antitoxin protein PARD- 24.1 78 0.0027 24.7 4.0 39 352-390 7-47 (88)
352 2v1y_A Phosphatidylinositol-4, 23.9 97 0.0033 25.2 4.7 69 3-74 22-103 (108)
353 1pqs_A Cell division control p 23.9 67 0.0023 24.5 3.5 36 12-50 3-43 (77)
354 3lxf_A Ferredoxin; iron, iron- 23.7 76 0.0026 25.0 4.0 28 2-29 2-29 (104)
355 1t3q_A Quinoline 2-oxidoreduct 23.1 58 0.002 28.2 3.4 28 1-29 10-37 (168)
356 2ejs_A Autocrine motility fact 23.1 1.9E+02 0.0064 20.9 5.5 42 170-213 11-52 (58)
357 2ekf_A Ancient ubiquitous prot 22.7 1.6E+02 0.0055 21.5 5.1 42 170-213 11-52 (61)
358 1cuk_A RUVA protein; DNA repai 22.6 42 0.0014 30.3 2.5 25 172-199 160-184 (203)
359 3hk0_A Growth factor receptor- 22.5 1.6E+02 0.0054 27.4 6.5 56 3-61 11-73 (256)
360 2ktr_A Sequestosome-1; autopha 22.2 1.5E+02 0.0051 24.5 5.5 54 21-76 57-116 (117)
361 2cu1_A Mitogen-activated prote 22.0 1.7E+02 0.0058 23.6 5.6 45 2-52 8-53 (103)
362 1g2h_A Transcriptional regulat 21.7 43 0.0015 23.9 1.9 22 372-394 22-43 (61)
363 1kbh_B CREB-binding protein, n 21.7 36 0.0012 24.6 1.4 15 292-306 31-45 (59)
364 2ba3_A NIKA; dimer, bacterial 21.5 89 0.0031 21.2 3.5 28 352-379 19-47 (51)
365 1ffv_A CUTS, iron-sulfur prote 21.3 69 0.0023 27.9 3.5 27 2-29 5-31 (163)
366 1eto_A FIS, factor for inversi 21.2 48 0.0017 26.3 2.3 23 372-394 59-81 (98)
367 1pgy_A SWA2P; UBA, ubiquitin, 20.8 1.9E+02 0.0064 19.9 4.7 32 357-388 4-36 (47)
368 3r8s_T 50S ribosomal protein L 20.7 1.7E+02 0.0057 23.1 5.3 40 11-53 28-68 (93)
369 3iqt_A Signal transduction his 20.2 55 0.0019 26.9 2.5 33 288-320 18-50 (123)
370 2jrh_A Mitogen-activated prote 20.2 2.2E+02 0.0075 22.5 5.7 45 3-53 5-50 (94)
No 1
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=100.00 E-value=4.2e-76 Score=592.32 Aligned_cols=354 Identities=36% Similarity=0.617 Sum_probs=246.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCCCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k~~ 80 (403)
|+|+||+++|++|.|+|++++||.+||++|+.++++..|++++|||||+||+|+|+++|++|||+++++|++|+.+.+..
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~~ 87 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAG 87 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCSS
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCCC
Confidence 89999999999999999999999999999999432111999999999999999999999999999999997777776654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 015622 81 SSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSVSDVYG 160 (403)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (403)
+....+++..+++.+++ .++.. +...+.+++...+...... +.+.+.+..+|..+..+.+.......++
T Consensus 88 ~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 156 (368)
T 1oqy_A 88 QGTSAPPEASPTAAPES---STSFP---PAPTSGMSHPPPAAREDKS-----PSEESAPTTSPESVSGSVPSSGSSGREE 156 (368)
T ss_dssp SCCCCCSSCCCCCSSSC---CCSCC---CSSSCCCCCCCSSSSCCCC-----CSCSCCCCSSTTCSCCCSCSCCCSCCCC
T ss_pred CCCCCCcccCCCCCccc---cCCCC---CCCCCCCCCCCccccccCC-----ccccCCCCCCCCcccccccccccccccc
Confidence 43211111111111110 00000 0000000000000000000 0000000001111110111111123345
Q ss_pred hhhccccCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCCCCCCCCccccccCCCCCCCCCCccc
Q 015622 161 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 240 (403)
Q Consensus 161 ~~~s~l~~g~~~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~GIP~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (403)
.+.|+||+|++++++|++||+|| |+|++|++|||++|||||||||||++|||++.+...+ ...+ . .
T Consensus 157 ~~~s~l~~g~~~~~~i~~l~~MG---f~~~~~~~AL~a~~nn~~~A~e~L~~gip~~~~~~~~--------~~~~--~-~ 222 (368)
T 1oqy_A 157 DAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHG--------SVQE--S-Q 222 (368)
T ss_dssp CCCTTTCCTTTHHHHHHHHHTTT---CCSHHHHHHHHHSCSSTTHHHHTTTTSSTTCSSCCCC--------CCCC--C-C
T ss_pred cccccccCCcchHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCcccccccC--------Cccc--c-c
Confidence 56789999999999999999999 9999999999999999999999999999987432210 0000 0 0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCchHHhhccHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHH
Q 015622 241 AQQPAAPAPTSGPNANPLDLFPQQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 320 (403)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~nlf~~~~~~~~~~~~~~~~l~~Lr~~pqf~~lR~~vq~NP~lL~~~Lqqi~~~nP~L~~lI~ 320 (403)
. . . . .+.++++.++|+|||++|||++||++||+||++|++|||+|+++||+|+++|+
T Consensus 223 -----~--~-~-------------~--~~~~~~~~~~l~~Lr~~pqf~~lR~~vq~nP~~l~~~lq~l~~~nP~l~~~I~ 279 (368)
T 1oqy_A 223 -----V--S-E-------------Q--PATEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQIS 279 (368)
T ss_dssp -----S--S-C-------------C--CCSSCCSCCTTHHHHHSHHHHHHHHSTTTCTTHHHHHHTTTTTTCHHHHHHHH
T ss_pred -----c--c-c-------------c--cCccccccchHHHHhcChHHHHHHHHHHhChHHHHHHHHHHHhhCHHHHHHHH
Confidence 0 0 0 0 01112346789999999999999999999999999999999999999999999
Q ss_pred HcHHHHHHHhcCCCCCC-CCc----cccccc--ccCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHH
Q 015622 321 EHQTDFLRLINEPVEGG-EGN----VLGQLA--SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 393 (403)
Q Consensus 321 ~n~e~Fl~~l~~~~~~~-~g~----~~~~~~--~~~~~~~~lt~ee~~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~ 393 (403)
+||++||+||+++++++ .+. +.+... ......|+||+||+++|+||++|||++++||+||++||||+++|+||
T Consensus 280 ~n~~~Fl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~ee~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~ 359 (368)
T 1oqy_A 280 RHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANF 359 (368)
T ss_dssp HHHHHHHHHHHSCCCCSCSSCCCSSSSCCCSCCCTTCSSCCCCTTTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHH
T ss_pred HCHHHHHHHHcCcccccccccccccccccccccCCccccccCCCcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999886421 110 001110 11234789999999999999999999999999999999999999999
Q ss_pred HhccCCCCC
Q 015622 394 LLDHMHEFE 402 (403)
Q Consensus 394 l~~~~~d~~ 402 (403)
||+|.+|+|
T Consensus 360 L~~~~~d~~ 368 (368)
T 1oqy_A 360 LLSQNFDDE 368 (368)
T ss_dssp HHHHHCCCC
T ss_pred HhhCcCcCC
Confidence 999987764
No 2
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=100.00 E-value=2.3e-38 Score=285.03 Aligned_cols=127 Identities=33% Similarity=0.564 Sum_probs=99.5
Q ss_pred CCCchHHhh-ccHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcCCCCCC------------CCc
Q 015622 274 GAGTLDFLR-NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------------EGN 340 (403)
Q Consensus 274 ~~~~l~~Lr-~~pqf~~lR~~vq~NP~lL~~~Lqqi~~~nP~L~~lI~~n~e~Fl~~l~~~~~~~------------~g~ 340 (403)
++++|++|| ++|+|++||++||+||++|++|||+|+++||+|+++|++||++||+||+++..+. ++.
T Consensus 21 ~~~~l~~L~~~~Pqf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~qNqe~Fl~mLnep~~~~~~~m~~~~~~~~~g~ 100 (171)
T 2qsf_X 21 QGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGE 100 (171)
T ss_dssp -------CCCCHHHHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHHCHHHHHHHHHHCCC-----------------
T ss_pred ccCCHHHHHhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHhCcccchhhhhccccccccccc
Confidence 457799999 9999999999999999999999999999999999999999999999999875431 010
Q ss_pred ------cccc----c-cccCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015622 341 ------VLGQ----L-ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400 (403)
Q Consensus 341 ------~~~~----~-~~~~~~~~~lt~ee~~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~~~~~d 400 (403)
..+. . +......|.+|+||+++|+||++|||+|+.||+||++|||||++|+||||++++|
T Consensus 101 ~~~~~~~~g~~~~~~~~~~~~~~i~~tpee~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~~~d 171 (171)
T 2qsf_X 101 DIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDHAD 171 (171)
T ss_dssp --------------------EECCCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC---
T ss_pred ccccccccccccccCCCCCCcccCCCCccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence 0000 0 0111247899999999999999999999999999999999999999999998765
No 3
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=99.84 E-value=7.3e-22 Score=153.20 Aligned_cols=62 Identities=44% Similarity=0.880 Sum_probs=58.9
Q ss_pred CCchHHhhccHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcCCCCC
Q 015622 275 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 336 (403)
Q Consensus 275 ~~~l~~Lr~~pqf~~lR~~vq~NP~lL~~~Lqqi~~~nP~L~~lI~~n~e~Fl~~l~~~~~~ 336 (403)
+++|+|||++|+|++||++||+||++|++|||+|+++||+|+++|++||++|++||+++.++
T Consensus 3 ~~~l~~Lr~~Pqf~qlR~~vqqNP~lL~~lLqqL~~~NPqL~q~I~~n~e~Fl~ll~e~~~~ 64 (72)
T 1pve_A 3 HMPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQE 64 (72)
T ss_dssp TCTTGGGTTCTTTTTHHHHHTTCGGGHHHHHHHHHTTCHHHHHHHHTTHHHHHHHHHSCSCC
T ss_pred CchHHHHHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcCCccC
Confidence 45799999999999999999999999999999999999999999999999999999998653
No 4
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=99.84 E-value=5.6e-21 Score=143.99 Aligned_cols=59 Identities=46% Similarity=0.935 Sum_probs=56.6
Q ss_pred CchHHhhccHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcCCC
Q 015622 276 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 334 (403)
Q Consensus 276 ~~l~~Lr~~pqf~~lR~~vq~NP~lL~~~Lqqi~~~nP~L~~lI~~n~e~Fl~~l~~~~ 334 (403)
++++|||++|+|++||++||+||++|+++||+|+++||+|+++|++||++|++||++++
T Consensus 2 ~~l~~Lr~~Pqf~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I~~n~e~Fl~ll~e~~ 60 (61)
T 2f4m_B 2 HPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 60 (61)
T ss_dssp CGGGGGTTCHHHHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHTSCC
T ss_pred chHHHHHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcccC
Confidence 46899999999999999999999999999999999999999999999999999998763
No 5
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.5e-19 Score=151.29 Aligned_cols=78 Identities=24% Similarity=0.397 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCCCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k~~ 80 (403)
|+|+||+++|++|.|+|++++||.+||++|+.++| +++++|||||+||+|+|+++|++|||++|++|+|++++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSIS---CEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTT---SCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876644
Q ss_pred C
Q 015622 81 S 81 (403)
Q Consensus 81 ~ 81 (403)
+
T Consensus 79 ~ 79 (106)
T 3m62_B 79 K 79 (106)
T ss_dssp -
T ss_pred C
Confidence 3
No 6
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=2.7e-18 Score=140.53 Aligned_cols=78 Identities=45% Similarity=0.705 Sum_probs=73.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETV---QGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~---~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~ 77 (403)
|+|+||+++|+.+.++|++++||.+||++|+.. .| +|+++|||+|+||.|+|+++|++|||++|++|+|+++++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDA---FPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTT---CCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCC---CChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 899999999999999999999999999999999 67 999999999999999999999999999999999999876
Q ss_pred CCCC
Q 015622 78 KVSS 81 (403)
Q Consensus 78 k~~~ 81 (403)
+..+
T Consensus 78 ~~~~ 81 (95)
T 1uel_A 78 KAVS 81 (95)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5443
No 7
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.76 E-value=1.4e-18 Score=140.35 Aligned_cols=80 Identities=34% Similarity=0.492 Sum_probs=72.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCCCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k~~ 80 (403)
|+|+||+++|++|.|+|++++||.+||++|+.++| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+...
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999988765
Q ss_pred CCC
Q 015622 81 SSG 83 (403)
Q Consensus 81 ~~~ 83 (403)
...
T Consensus 78 ~~~ 80 (88)
T 4fbj_B 78 GLR 80 (88)
T ss_dssp ---
T ss_pred CCC
Confidence 444
No 8
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.76 E-value=1.3e-18 Score=140.46 Aligned_cols=74 Identities=28% Similarity=0.392 Sum_probs=70.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|++|.|+|++++||.+||++|+.++| +++++|||+|+||.|+|+++|++|+| +|++|||+++.+.
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPP 79 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999 8999999998654
No 9
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=136.10 Aligned_cols=74 Identities=24% Similarity=0.320 Sum_probs=71.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~ 77 (403)
|+|+||+++|+++.++|++++||.+||++|+.++| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcC---CCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999999865
No 10
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.75 E-value=4.1e-18 Score=135.57 Aligned_cols=76 Identities=36% Similarity=0.640 Sum_probs=69.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETV---QGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~---~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~ 77 (403)
|+|+||+++|+.+.++|++++||.+||++|+.+ .| +|+++|||+|+||.|+|+++|++|||++|++|||+++++
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDA---FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTT---CCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccC---CCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 77 999999999999999999999999999999999999876
Q ss_pred CC
Q 015622 78 KV 79 (403)
Q Consensus 78 k~ 79 (403)
++
T Consensus 83 ~~ 84 (85)
T 2wyq_A 83 KA 84 (85)
T ss_dssp --
T ss_pred CC
Confidence 54
No 11
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.74 E-value=4.5e-18 Score=137.84 Aligned_cols=74 Identities=39% Similarity=0.646 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~ 77 (403)
|+|+||+++|++|.|+|++++||.+||++|+.++| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999998764
No 12
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.74 E-value=4e-18 Score=136.84 Aligned_cols=72 Identities=36% Similarity=0.517 Sum_probs=70.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCee-cCCcCchhhcccCCCCEEEEEEe
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV-LKDVTTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKi-L~D~~tL~d~gI~~~s~I~v~v~ 75 (403)
|+|+||+++|+.+.++|++++||.+||++|+.+.| +|+++|||+|+||. |+|+++|++|||++|++|+|+++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQH---IPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 89999999999999999999999999999999999 99999999999999 99999999999999999999875
No 13
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.74 E-value=2.5e-18 Score=142.19 Aligned_cols=74 Identities=27% Similarity=0.459 Sum_probs=69.0
Q ss_pred CEEEEEeCCCcEEEE--EeCCCCCHHHHHHHH-HHHhCCCCCCCCCcEEEeCCeecCCcCchhhccc-CCCCEEEEEEec
Q 015622 1 MKVFVKTLKGTHFEI--EVKPEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~gk~~~i--eV~~~~TV~~LK~kI-~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI-~~~s~I~v~v~k 76 (403)
|+|+||+++|++|.+ +|++++||.+||++| +...| +|+++|||||+||+|+|+.+|++|+| ++|++|+||+++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSC---SCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcC---CChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998777 566999999999999 88878 99999999999999999999999999 999999999987
Q ss_pred C
Q 015622 77 S 77 (403)
Q Consensus 77 ~ 77 (403)
+
T Consensus 97 p 97 (98)
T 4a20_A 97 N 97 (98)
T ss_dssp C
T ss_pred C
Confidence 5
No 14
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.3e-18 Score=138.46 Aligned_cols=73 Identities=29% Similarity=0.457 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEEEeC--CCCCHHHHHHHH-HHHhCCCCCCCCCcEEEeCCeecCCcCchhhccc-CCCCEEEEEEec
Q 015622 1 MKVFVKTLKGTHFEIEVK--PEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~--~~~TV~~LK~kI-~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI-~~~s~I~v~v~k 76 (403)
|+|+||+++|++|.|+|+ +++||.+||++| +.+.| +|+++|||||+||+|+|+.+|++|+| .+|++|+|++++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSC---SSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcC---CChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999988755 999999999999 99989 99999999999999999999999999 699999999864
No 15
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.73 E-value=6.3e-18 Score=137.90 Aligned_cols=71 Identities=27% Similarity=0.379 Sum_probs=68.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEE
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v 74 (403)
|+|+||++.|+++.|+|++++||.+||++|+++.| +|+++|||+|+||+|+|+.+|++|+|++|++|++..
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~G---ip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIG---TQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhC---CCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 68999999999999999999999999999999999 999999999999999999999999999999999863
No 16
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.73 E-value=1.2e-17 Score=136.05 Aligned_cols=77 Identities=36% Similarity=0.589 Sum_probs=73.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCCCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k~~ 80 (403)
|+|+||+++|++|.|+|++++||.+||++|+.++| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876543
No 17
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.6e-17 Score=138.56 Aligned_cols=76 Identities=26% Similarity=0.324 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCCCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k~~ 80 (403)
|+|+||+.+|+ |.|+|++++||.+||++|+.++| +++++|||+|+||+|+|+++|++|+|+++++|||+++++..+
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 93 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHT---CCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence 78999998886 79999999999999999999999 999999999999999999999999999999999999876543
No 18
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.4e-17 Score=137.06 Aligned_cols=75 Identities=36% Similarity=0.577 Sum_probs=72.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|++|.|+|++++||.+||++|+.++| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998764
No 19
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.72 E-value=2.1e-17 Score=127.99 Aligned_cols=75 Identities=36% Similarity=0.550 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+.+|+++.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999988653
No 20
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.72 E-value=1.1e-17 Score=133.91 Aligned_cols=75 Identities=36% Similarity=0.546 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|++|.|+|++++||.+||++|+.++| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998653
No 21
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.5e-17 Score=138.97 Aligned_cols=77 Identities=19% Similarity=0.364 Sum_probs=73.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCCCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k~~ 80 (403)
|+|+||+++|+++.|+|++++||.+||++|+.+.| +++++|||+|+||.|+|+++|++|||++|++|||++++++..
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~~ 100 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEG---VEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQN 100 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTC---CCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999999876653
No 22
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=1.8e-17 Score=129.92 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=70.1
Q ss_pred CEEEEEeCCCcEE-EEE-eCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEec
Q 015622 1 MKVFVKTLKGTHF-EIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~gk~~-~ie-V~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k 76 (403)
|+|+||+++|+.+ .++ |++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|||++|++|||+++.
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~g---ip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFH---VEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999985 899 9999999999999999999 99999999999999999999999999999999999875
No 23
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=9.7e-18 Score=138.96 Aligned_cols=71 Identities=17% Similarity=0.281 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEE
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v 74 (403)
|+|+||++.|+++.|+|++++||.+||++|+.+.| +|+++|||||+||+|+|+.+|++|||+++++|+|..
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~G---ip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTG---TRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999864
No 24
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.71 E-value=3.8e-17 Score=126.51 Aligned_cols=75 Identities=37% Similarity=0.601 Sum_probs=72.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+.+|+.+.++|++++||.+||++|+..+| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+.
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 75 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999988653
No 25
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=4.8e-17 Score=130.76 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=72.1
Q ss_pred CEEEEEeCCC-cEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKG-THFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~g-k~~~i-eV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++| +++.| +|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|+|+++++|||+++.+.
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFD---VRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSC---CCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHC---cChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 7999999999 69999 59999999999999999999 9999999999999999999999999999999999998765
Q ss_pred C
Q 015622 79 V 79 (403)
Q Consensus 79 ~ 79 (403)
.
T Consensus 85 G 85 (89)
T 1wy8_A 85 G 85 (89)
T ss_dssp S
T ss_pred C
Confidence 4
No 26
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.1e-17 Score=131.19 Aligned_cols=76 Identities=36% Similarity=0.546 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+++|+++.|+|++++||.+||++|+.+++ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.-
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987653
No 27
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.8e-17 Score=129.30 Aligned_cols=73 Identities=27% Similarity=0.424 Sum_probs=70.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEec
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k 76 (403)
|+|+||+++|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLN---VPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999875
No 28
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=132.85 Aligned_cols=75 Identities=24% Similarity=0.310 Sum_probs=70.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|+.+.++|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+.
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~g 79 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTC---SCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC---
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998654
No 29
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=4e-17 Score=132.86 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=71.0
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCCHHHHHHHHHHHh--CCCCCCCCCcEEEeCCeecCCcCchhhc--ccCCCCEEEEEE
Q 015622 1 MKVFVKTLKGT--HFEIEVKPEDKVSDVKKNIETVQ--GSDVYPASQQMLIHQGKVLKDVTTLEEN--KVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~gk--~~~ieV~~~~TV~~LK~kI~~~~--g~~~ip~~~QkLiy~GKiL~D~~tL~d~--gI~~~s~I~v~v 74 (403)
|+|+||+.+++ .+.|+|++++||.+||++|+.++ + +++++|||||+||+|+|+++|++| +|+++++|||++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~---i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPER---PRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTC---CCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCC---CChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 79999999988 67788889999999999999998 8 999999999999999999999999 999999999998
Q ss_pred ecCCCC
Q 015622 75 TKSKVS 80 (403)
Q Consensus 75 ~k~k~~ 80 (403)
+.+..+
T Consensus 85 ~~~gg~ 90 (93)
T 1wgd_A 85 NVKSGP 90 (93)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 30
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.70 E-value=2.7e-17 Score=132.02 Aligned_cols=71 Identities=30% Similarity=0.411 Sum_probs=68.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEe
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~ 75 (403)
|+|+||+++|+++.|+|++++||.+||++|+.++| +|+++|||+|+||.|+|+.+|++||| +|++|||++|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 78999999999999999999999999999999999 99999999999999999999999999 8999999875
No 31
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3.6e-17 Score=129.62 Aligned_cols=76 Identities=37% Similarity=0.577 Sum_probs=73.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+++|+++.|+|++++||.+||++|+.+++ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999999999999987653
No 32
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=4.7e-17 Score=130.09 Aligned_cols=75 Identities=29% Similarity=0.467 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|+++.++|++++||.+||++|+.++| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~G 82 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQG---LPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGS 82 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTC---CCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhC---CChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998765
No 33
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.70 E-value=2.5e-17 Score=129.52 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=72.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+|+.|+|+++|++|+|+++++|+|+++.+.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~g---i~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998653
No 34
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=4.9e-17 Score=132.73 Aligned_cols=74 Identities=28% Similarity=0.320 Sum_probs=68.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCc-CchhhcccCCCCEEEEEEecCCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~-~tL~d~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+++|+.+.|+|++++||.+||++|+.+. +++|||||+||.|+|+ ++|++|||++|++|||++++++.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~------~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ------ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST------TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC------cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 7899999999999999999999999999998763 7899999999999999 99999999999999999987654
Q ss_pred C
Q 015622 80 S 80 (403)
Q Consensus 80 ~ 80 (403)
.
T Consensus 82 ~ 82 (95)
T 1wia_A 82 A 82 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 35
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=4.7e-17 Score=131.27 Aligned_cols=75 Identities=33% Similarity=0.604 Sum_probs=69.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|+++.++|++++||.+||++|+.++| +|+++|||+|+||.|+|+++|++|||+++++|+|+++.+.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~G 84 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 84 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999988654
No 36
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.69 E-value=7.6e-17 Score=131.98 Aligned_cols=75 Identities=31% Similarity=0.370 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCc-CchhhcccCCCCEEEEEEecCCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~-~tL~d~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+++| ++.|+|++++||.+||++|+.++| +|+++|||+|+||+|+|+ ++|++|||+++++|+|+++.+..
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVEN---TPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSS---SCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 6899999888 899999999999999999999999 999999999999999999 99999999999999999987654
No 37
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=2.6e-17 Score=137.66 Aligned_cols=77 Identities=22% Similarity=0.234 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---------------CCcEEEeCCeecC-CcCchhhccc
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA---------------SQQMLIHQGKVLK-DVTTLEENKV 64 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~---------------~~QkLiy~GKiL~-D~~tL~d~gI 64 (403)
|+|+||+++|++|.|+|++++||.+||++|+.+.+ +++ ++|+|||+||+|. |+++|++|||
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~---i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQ---LKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHH---HHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 89999999999999999999999999999999998 766 4679999999996 5699999999
Q ss_pred CCCCEEEEEEecCCCC
Q 015622 65 AENSFVVVMLTKSKVS 80 (403)
Q Consensus 65 ~~~s~I~v~v~k~k~~ 80 (403)
++|++|||+++.+...
T Consensus 85 ~~g~~l~lv~~lr~~~ 100 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQKS 100 (105)
T ss_dssp CSSEEEEEEECSCSCC
T ss_pred CCCCEEEEEehhccCC
Confidence 9999999999887653
No 38
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=7.8e-17 Score=133.66 Aligned_cols=76 Identities=20% Similarity=0.334 Sum_probs=70.0
Q ss_pred CEEEEEeCCC----cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCc-CchhhcccCCCCEEEEEEe
Q 015622 1 MKVFVKTLKG----THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 1 MkI~VKtl~g----k~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~-~tL~d~gI~~~s~I~v~v~ 75 (403)
|+|+||+..+ ++|.|+|++++||.+||++|+.++| +++++|||+|+||.|+|+ ++|++|+|+++++|||+++
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESG---VPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTC---CCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHC---cChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 7899999754 7899999999999999999999999 999999999999999987 7999999999999999987
Q ss_pred cCCC
Q 015622 76 KSKV 79 (403)
Q Consensus 76 k~k~ 79 (403)
.+..
T Consensus 85 ~~gg 88 (102)
T 1v5o_A 85 DNVG 88 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6544
No 39
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.68 E-value=5.3e-17 Score=133.46 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|+++.|+|.+++||.+||++|+.+.| +|+++|||||+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~g---ip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998653
No 40
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=9.7e-17 Score=132.94 Aligned_cols=73 Identities=19% Similarity=0.132 Sum_probs=65.4
Q ss_pred EEEEEeCC----CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecC
Q 015622 2 KVFVKTLK----GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 2 kI~VKtl~----gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~ 77 (403)
.|.|+..+ +++|.|+|++++||.+||++|+.+.| +|+++|||||+||+|+|+++|++|+|++|++|+||+ .+
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~g---ip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~-lr 92 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFG---LQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLE-LK 92 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTT---CCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEEC-CC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHC---cCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEE-EC
Confidence 36677666 67899999999999999999999999 999999999999999999999999999999995554 44
Q ss_pred C
Q 015622 78 K 78 (403)
Q Consensus 78 k 78 (403)
.
T Consensus 93 g 93 (100)
T 1wju_A 93 Q 93 (100)
T ss_dssp C
T ss_pred C
Confidence 3
No 41
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.68 E-value=1.2e-16 Score=124.41 Aligned_cols=71 Identities=30% Similarity=0.517 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEe
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~ 75 (403)
|+|+||+ +|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhC---CCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 6899998 899999999999999999999999999 9999999999999999999999999999999999864
No 42
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=6.2e-17 Score=132.26 Aligned_cols=75 Identities=27% Similarity=0.322 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+. |+.+.|+|++++||.+||++|+.++| +++++|||+|+||.|+|+++|++|+|+++++|||+++.+..
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLH---CNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTC---SCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 78999998 89999999999999999999999999 99999999999999999999999999999999999887653
No 43
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.67 E-value=1.1e-16 Score=134.74 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|++|.|+|++++||.+||++|+.++| +|+++|||+|+||.|+|+++|++|+|+++++|||+++.+.
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---CChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 79999999999999999999999999999999999 9999999999999999999999999999999999998753
No 44
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.67 E-value=2e-16 Score=129.81 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+.+|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---i~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~g 75 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998654
No 45
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=131.31 Aligned_cols=74 Identities=30% Similarity=0.353 Sum_probs=70.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+. |+.+.|+|++++||.+||++|+..+| +|+++|||+|+||+|+|+++|++|||++|++|+|+++++.
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFK---SHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHT---CCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999998 88999999999999999999999999 9999999999999999999999999999999999987654
No 46
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.49 E-value=4.4e-18 Score=132.63 Aligned_cols=75 Identities=27% Similarity=0.408 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+.+|+++.++|++++||.+||++|+...| +|+++|+|+|+||.|+|+++|++|||++|++|||+++.+.
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQG---VPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998653
No 47
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.4e-16 Score=131.81 Aligned_cols=75 Identities=27% Similarity=0.324 Sum_probs=70.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+.+|+ +.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|||+++++|+|+++.+..
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 78999999886 79999999999999999999999 99999999999999999999999999999999999986553
No 48
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=1.9e-16 Score=136.29 Aligned_cols=75 Identities=28% Similarity=0.323 Sum_probs=69.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+. |+.+.|+|++++||.+||++|+.++| +++++|||||+||+|+|+++|++|||++|++|+|+++++..
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFK---SQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHC---SCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHC---cCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 78999998 89999999999999999999999999 99999999999999999999999999999999999987654
No 49
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=128.67 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=69.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+ |+++.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G 92 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEG---IAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG 92 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHT---CCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhC---cChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 7999997 88999999999999999999999999 9999999999999999999999999999999999988653
No 50
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=3.9e-16 Score=132.75 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=65.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCC---CC--CCCCcEEEeCCeecCCcCchhhcccCCCC--EEEEE
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD---VY--PASQQMLIHQGKVLKDVTTLEENKVAENS--FVVVM 73 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~---~i--p~~~QkLiy~GKiL~D~~tL~d~gI~~~s--~I~v~ 73 (403)
|+|+||+++|++++|+|++++||.+||++|+..++++ .+ ++++|||||.||+|+|+++|++|+|+.++ +|||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 7899999999999999999999999999999954321 14 69999999999999999999999998775 45666
Q ss_pred Eec
Q 015622 74 LTK 76 (403)
Q Consensus 74 v~k 76 (403)
++.
T Consensus 97 lr~ 99 (116)
T 1wgh_A 97 ARE 99 (116)
T ss_dssp ECS
T ss_pred ccC
Confidence 544
No 51
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=2.4e-16 Score=129.56 Aligned_cols=72 Identities=21% Similarity=0.276 Sum_probs=67.4
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecC
Q 015622 1 MKVFVKTLKGTHF-EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 1 MkI~VKtl~gk~~-~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~ 77 (403)
|+|+|| +.|+.| .|+|++++||.+||++|+.++| +|+++|||+|+||+|+|+ +|++|||+++++|+||.+..
T Consensus 8 m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tg---ip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTG---VQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTC---CCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 689999 578899 6999999999999999999999 999999999999999999 99999999999999997643
No 52
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.65 E-value=5.9e-16 Score=139.86 Aligned_cols=77 Identities=35% Similarity=0.549 Sum_probs=73.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCCCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k~~ 80 (403)
|+|+||+++|+++.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|||++|++|||+++.+...
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999887643
No 53
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=4.7e-16 Score=130.06 Aligned_cols=74 Identities=23% Similarity=0.152 Sum_probs=68.3
Q ss_pred CEEEEEeCCC---cEEEEEeC--------C-CCCHHHHHHHHHHHh--CCCCCCCCC-cEEEeCCeecCCcCchhhcccC
Q 015622 1 MKVFVKTLKG---THFEIEVK--------P-EDKVSDVKKNIETVQ--GSDVYPASQ-QMLIHQGKVLKDVTTLEENKVA 65 (403)
Q Consensus 1 MkI~VKtl~g---k~~~ieV~--------~-~~TV~~LK~kI~~~~--g~~~ip~~~-QkLiy~GKiL~D~~tL~d~gI~ 65 (403)
|+|+||+.++ ++|.|+|. + ++||.+||++|+.++ | +++++ |||||+||+|+|+++|++|||+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~g---ip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQES---VPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTT---CCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccC---CChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 7899999999 78999954 4 499999999999999 8 99999 9999999999999999999999
Q ss_pred CCCEEEEEEecC
Q 015622 66 ENSFVVVMLTKS 77 (403)
Q Consensus 66 ~~s~I~v~v~k~ 77 (403)
++++|||+++.+
T Consensus 90 ~g~~i~lv~~~~ 101 (107)
T 1x1m_A 90 PGSTVHVLRKSW 101 (107)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCEEEEEeCCC
Confidence 999999998754
No 54
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.64 E-value=3.2e-17 Score=117.76 Aligned_cols=47 Identities=53% Similarity=0.905 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCCC
Q 015622 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 402 (403)
Q Consensus 356 t~ee~~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~~~~~d~~ 402 (403)
|+||.++|+||++|||+|.+||+||++|+||+++|+||||+++.|++
T Consensus 1 ~~~e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~d~~ 47 (47)
T 1dv0_A 1 GSQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 47 (47)
T ss_dssp --CCHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCCCCC
T ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcCCCC
Confidence 68899999999999999999999999999999999999999987753
No 55
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.64 E-value=1.5e-16 Score=115.17 Aligned_cols=49 Identities=57% Similarity=1.000 Sum_probs=47.1
Q ss_pred cccCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCCC
Q 015622 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (403)
Q Consensus 165 ~l~~g~~~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~GIP~ 216 (403)
+|++|+.+++.|++|++|| |+|++|++|||+++||+|||||||++|||+
T Consensus 1 ~~~~~~~~~~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~e~L~~gip~ 49 (49)
T 1ify_A 1 TLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPG 49 (49)
T ss_dssp CCCCSHHHHHHHHHHHHTT---CCHHHHHHHHHTTTSCSHHHHHHHHHCCCC
T ss_pred CCCCCccCHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 4789999999999999999 999999999999999999999999999995
No 56
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.63 E-value=9.7e-16 Score=128.90 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|+.+.++|++++||.+||++|+.++| +++++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998653
No 57
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.63 E-value=9.4e-16 Score=124.28 Aligned_cols=72 Identities=25% Similarity=0.409 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEE---eCCeecCCcCchhhcccCCCCEEEEEEec
Q 015622 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~gk~~~i-eV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLi---y~GKiL~D~~tL~d~gI~~~s~I~v~v~k 76 (403)
|+|+||. .|++|.| +|++++||.+||++|+.++| +|+++|||+ |+||+|+|+.+|++|+|+++++|+||.+.
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~g---ip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTG---VLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTC---CCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 7899995 8899999 99999999999999999999 999999999 99999999999999999999999999753
No 58
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=1.2e-15 Score=123.61 Aligned_cols=73 Identities=29% Similarity=0.408 Sum_probs=67.0
Q ss_pred CEEEEEeCCCcEEEEEeCCC-----CCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCC-cCchhhcccCCCCEEEEEE
Q 015622 1 MKVFVKTLKGTHFEIEVKPE-----DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~-----~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D-~~tL~d~gI~~~s~I~v~v 74 (403)
|+|+||+ .|+.|.|+|+++ +||.+||++|+..+| +|+++|||+|+||.|+| +++|++|||+++++|||+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIG---VPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHC---cCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 6899997 588999999995 999999999999999 99999999999999998 6689999999999999997
Q ss_pred ecC
Q 015622 75 TKS 77 (403)
Q Consensus 75 ~k~ 77 (403)
+..
T Consensus 84 ~~~ 86 (92)
T 1wxv_A 84 KKN 86 (92)
T ss_dssp CCS
T ss_pred cCC
Confidence 543
No 59
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.62 E-value=5.1e-16 Score=132.19 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=67.7
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccC-------CCCEEEE
Q 015622 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA-------ENSFVVV 72 (403)
Q Consensus 1 MkI~VKtl~gk-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~-------~~s~I~v 72 (403)
|.++|+...++ ++.|+|++++||.+||++|+.+.| +|+++|||||+||+|+|+++|++|||+ ++++|||
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~eg---IP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L 77 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhC---CCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEE
Confidence 77888877776 589999999999999999999999 999999999999999999999999999 6999999
Q ss_pred EEe
Q 015622 73 MLT 75 (403)
Q Consensus 73 ~v~ 75 (403)
+++
T Consensus 78 ~lr 80 (118)
T 2fnj_B 78 AFR 80 (118)
T ss_dssp EEB
T ss_pred Eec
Confidence 997
No 60
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.4e-16 Score=130.72 Aligned_cols=72 Identities=29% Similarity=0.517 Sum_probs=68.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEec
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k 76 (403)
|+|+||+ +|+.|.|+|++++||.+||++|+.++| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHS---CCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 5688997 889999999999999999999999999 99999999999999999999999999999999999764
No 61
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.62 E-value=4.5e-16 Score=128.84 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=64.2
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCCHHHHHHHHHHHh-CCCCCCCCCcEEEeCCeecCCcCchhhc--ccCCCCEEEEE
Q 015622 1 MKVFVKTLKGT--HFEIEVKPEDKVSDVKKNIETVQ-GSDVYPASQQMLIHQGKVLKDVTTLEEN--KVAENSFVVVM 73 (403)
Q Consensus 1 MkI~VKtl~gk--~~~ieV~~~~TV~~LK~kI~~~~-g~~~ip~~~QkLiy~GKiL~D~~tL~d~--gI~~~s~I~v~ 73 (403)
|+|+||+++|+ .+.|+|++++||.+||++|+.++ |. +++++|||||+||+|+|+++|++| +|+++++|+|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~--pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSK--PLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTC--CCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCC--CChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 67899999999999999999874 51 446999999999999999999999 99999999974
No 62
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.62 E-value=7.3e-16 Score=132.76 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=65.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHH------HhCCCCC--CCCCcEEEeCCeecCCcCchhhcccCCCCE--E
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIET------VQGSDVY--PASQQMLIHQGKVLKDVTTLEENKVAENSF--V 70 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~------~~g~~~i--p~~~QkLiy~GKiL~D~~tL~d~gI~~~s~--I 70 (403)
|+|+||+++|+++.|+|++++||.+||++|+. +.| + ++++|||||+||+|+|+++|++|+|+++++ |
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~---ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEE---QVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCC---TTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccC---CCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 68999999999999999999999999999999 445 6 489999999999999999999999998875 5
Q ss_pred EEEEecC
Q 015622 71 VVMLTKS 77 (403)
Q Consensus 71 ~v~v~k~ 77 (403)
||+++.+
T Consensus 95 hlv~r~~ 101 (125)
T 2gow_A 95 HLVARET 101 (125)
T ss_dssp EEEECSC
T ss_pred EEEecCC
Confidence 5555543
No 63
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.62 E-value=6.7e-16 Score=131.15 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=69.2
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCC-------CCEEEE
Q 015622 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAE-------NSFVVV 72 (403)
Q Consensus 1 MkI~VKtl~gk-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~-------~s~I~v 72 (403)
|.|+|+...++ ++.++|++++||.+||++|+.+.| +|+++|||||+||+|+|++||++|||++ +++|||
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~g---iPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~L 77 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHC---CCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEE
Confidence 78888887777 688999999999999999999999 9999999999999999999999999999 999999
Q ss_pred EEec
Q 015622 73 MLTK 76 (403)
Q Consensus 73 ~v~k 76 (403)
+++.
T Consensus 78 vlr~ 81 (118)
T 4ajy_B 78 AFRA 81 (118)
T ss_dssp EECC
T ss_pred EEec
Confidence 9985
No 64
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.62 E-value=9.5e-16 Score=131.91 Aligned_cols=79 Identities=16% Similarity=0.261 Sum_probs=67.6
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCCHHHHHHHHHHHhCC--CCCCC--CCcEEEeCCeecCCcCchhhcccCCC------CE
Q 015622 1 MKVFVKTLKGTHF-EIEVKPEDKVSDVKKNIETVQGS--DVYPA--SQQMLIHQGKVLKDVTTLEENKVAEN------SF 69 (403)
Q Consensus 1 MkI~VKtl~gk~~-~ieV~~~~TV~~LK~kI~~~~g~--~~ip~--~~QkLiy~GKiL~D~~tL~d~gI~~~------s~ 69 (403)
|+|+||+++|+.| .+++++++||.+||++|+..++. ..+|+ ++|||||+||+|+|+++|++|+|+++ .+
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999988 69999999999999999765431 12776 79999999999999999999999998 56
Q ss_pred EEEEEecCCC
Q 015622 70 VVVMLTKSKV 79 (403)
Q Consensus 70 I~v~v~k~k~ 79 (403)
+||+++.+..
T Consensus 97 mhlVlrl~g~ 106 (126)
T 1se9_A 97 MHVIIQAPVT 106 (126)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeccCCc
Confidence 8888776643
No 65
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.62 E-value=1.1e-15 Score=135.45 Aligned_cols=75 Identities=24% Similarity=0.310 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+|+.|+|+++|++|||++|++|||+++.+.
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~G 156 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 156 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHC---CCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998765
No 66
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.8e-15 Score=128.03 Aligned_cols=76 Identities=33% Similarity=0.522 Sum_probs=72.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k~ 79 (403)
++|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|||+++++|+|+++.+..
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 48999999999999999999999999999999999 99999999999999999999999999999999999987654
No 67
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.61 E-value=1.2e-15 Score=128.17 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=72.0
Q ss_pred CEEEEEeC---CCcEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEec
Q 015622 1 MKVFVKTL---KGTHFEIEVKP-EDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl---~gk~~~ieV~~-~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k 76 (403)
|+|+||+. +|+.+.++|++ ++||.+||++|+..+| +|+++|||+|+||+|+|+++|++|||++|++|+|+++.
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQ---IPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTT---CCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 68999998 88999999998 9999999999999999 99999999999999999999999999999999999987
Q ss_pred CCC
Q 015622 77 SKV 79 (403)
Q Consensus 77 ~k~ 79 (403)
+..
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 68
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=9.5e-16 Score=125.61 Aligned_cols=71 Identities=23% Similarity=0.365 Sum_probs=65.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEec
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k 76 (403)
|+|+|| +.+++|.|+|++++||.+||++|+.++| +|+++|||+|+||+| |+.+|++|+|+++++||||.++
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tg---ip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITG---LPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHC---SCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecc
Confidence 688999 6789999999999999999999999999 999999999999999 5569999999999999998754
No 69
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.60 E-value=2.6e-15 Score=120.51 Aligned_cols=70 Identities=24% Similarity=0.436 Sum_probs=66.3
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEe
Q 015622 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 3 I~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~ 75 (403)
+++++++|+.|.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+++
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITN---VLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHC---CCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 567778999999999999999999999999999 9999999999999999999999999999999999864
No 70
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=135.60 Aligned_cols=74 Identities=38% Similarity=0.618 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~ 77 (403)
|+|+||+++|+++.|+|++++||.+||++|+.++| +|+++|||+|+||.|+|+.+|++|||+++++|+|+++.+
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~ 94 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 94 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCccccccCCHhHcCCcccceeeeeeccc
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999998754
No 71
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.59 E-value=3e-15 Score=132.76 Aligned_cols=72 Identities=29% Similarity=0.411 Sum_probs=70.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEE-e-CCeecCCcCchhhcccCCCCEEEEEEe
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-H-QGKVLKDVTTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLi-y-~GKiL~D~~tL~d~gI~~~s~I~v~v~ 75 (403)
|+|+||+++|+++.++|++++||.+||++|+.++| +|+++|||+ | +||.|+|+++|++|||++|++|+++++
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIG---VHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHC---CCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 89999999999999999999999999999999999 999999999 9 799999999999999999999999987
No 72
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.59 E-value=2.1e-15 Score=138.52 Aligned_cols=76 Identities=36% Similarity=0.549 Sum_probs=73.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+++|+++.|+|++++||.+||++|+.++| +|+++|||+|+||+|+|+.+|++|+|+++++|||+++.+..
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~g---Ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccC---CCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987654
No 73
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.58 E-value=3.9e-15 Score=124.28 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=68.3
Q ss_pred CEEEEEeCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhccc-CCCCEEEEEEec
Q 015622 1 MKVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~g--k~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI-~~~s~I~v~v~k 76 (403)
|+|+|++..+ .+++|+|++++||.+||++|++++| +|+++|||||+|+.|+|+++|.+||| ++|++|||++-.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~G---ipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYG---FPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhC---CCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899999885 6899999999999999999999999 99999999999999999999999999 599999999853
No 74
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.57 E-value=1.7e-16 Score=136.85 Aligned_cols=76 Identities=36% Similarity=0.555 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+++|+++.|+|++++||.+||.+|+..+| +|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++.+..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---cChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987654
No 75
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=8.3e-15 Score=123.99 Aligned_cols=73 Identities=25% Similarity=0.282 Sum_probs=67.0
Q ss_pred EEEEE-eCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecC
Q 015622 2 KVFVK-TLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 2 kI~VK-tl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~ 77 (403)
.|+|+ ...++.+.++++++.||++||++|+.+.+ +|++.|+|||+||+|+|+.||++|||++|.+|||+++..
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~---iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~ 90 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLG---IPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFST 90 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHT---CCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEES
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhC---CChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecC
Confidence 45555 55678999999999999999999999999 999999999999999999999999999999999998763
No 76
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.55 E-value=1.2e-14 Score=126.81 Aligned_cols=73 Identities=38% Similarity=0.627 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEec
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k 76 (403)
|+|+||+++|+.+.++|++++||.+||++|+.++| +|+++|+|+|+|+.|+|+++|++|||+++++|+|+.+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999864
No 77
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.55 E-value=1.8e-14 Score=121.82 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=69.7
Q ss_pred CEEEEEeC----------CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEE
Q 015622 1 MKVFVKTL----------KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFV 70 (403)
Q Consensus 1 MkI~VKtl----------~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I 70 (403)
++|+|+.. +|+++.|+|++++||.+||++|+..+| +|+++|||+|+||.|+|+++|++|+|+++++|
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATG---MPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSS---CCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHC---CChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 35777764 478999999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 015622 71 VVMLTKSKV 79 (403)
Q Consensus 71 ~v~v~k~k~ 79 (403)
||+++.+..
T Consensus 103 ~lv~rl~GG 111 (115)
T 1we7_A 103 HLALKERSG 111 (115)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999987754
No 78
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.54 E-value=8.2e-15 Score=131.88 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=69.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|.|+||+++|+++.++|++++||.+||++|+.++| +|+++|||+|+||.|+|+++|.+|+|++|++|||+++.+.
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrg 171 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 171 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC----
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhC---CCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCC
Confidence 57999999999999999999999999999999999 9999999999999999999999999999999999998653
No 79
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.54 E-value=1.6e-14 Score=126.07 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=71.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|+.+.++|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|||++|++|+|+++.++
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 151 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 68999999999999999999999999999999999 9999999999999999999999999999999999998754
No 80
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.53 E-value=8.7e-16 Score=136.54 Aligned_cols=77 Identities=35% Similarity=0.549 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCCCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k~~ 80 (403)
|+|+||+++|+++.|+|++++||.+||.+|+...| +|+++|+|+|+|++|+|+.+|++|+|+++++|+|+++.+...
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876543
No 81
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=9.2e-15 Score=118.32 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=63.3
Q ss_pred CEEEEEeCCCcEE--EE-EeCCCCCHHHHHHHHHHH-hCCCCCCCCCcEEEeC--CeecCCcCchhhcccCCCCEEEE
Q 015622 1 MKVFVKTLKGTHF--EI-EVKPEDKVSDVKKNIETV-QGSDVYPASQQMLIHQ--GKVLKDVTTLEENKVAENSFVVV 72 (403)
Q Consensus 1 MkI~VKtl~gk~~--~i-eV~~~~TV~~LK~kI~~~-~g~~~ip~~~QkLiy~--GKiL~D~~tL~d~gI~~~s~I~v 72 (403)
|+|+||+++|+.+ .| +|++++||.+||++|+.. .| +++++|||+|. ||+|+|+++|++|||+++++|||
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~---i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQ---WYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSS---SCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcC---CChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7999999998775 58 999999999999999995 67 99999999976 99999999999999999999775
No 82
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2.4e-14 Score=118.64 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=65.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEe--CCeecCCcCchhhcccCCCCEEEEEEe
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLKDVTTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy--~GKiL~D~~tL~d~gI~~~s~I~v~v~ 75 (403)
|.+++++++|+++.|+|++++||.+||++|++++| ||+++|||+| .|+ |+|+++|++|+|+.|++|||++.
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tg---Ipp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQ---IPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHC---CCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHC---CChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEec
Confidence 56778889999999999999999999999999999 9999999996 566 99999999999999999998763
No 83
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.46 E-value=9.5e-14 Score=136.16 Aligned_cols=74 Identities=38% Similarity=0.618 Sum_probs=69.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~ 77 (403)
|+|+||+++|+++.|+|++++||.+||++|+.+.| +|+++|||+|+||+|+|+++|++|+|+++++|+|+++.+
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~G---Ip~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999998753
No 84
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.44 E-value=8e-14 Score=112.36 Aligned_cols=73 Identities=15% Similarity=0.070 Sum_probs=63.9
Q ss_pred EEEEE--eCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEe-------CCeecCCcCchhhcccCCCCEEEE
Q 015622 2 KVFVK--TLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-------QGKVLKDVTTLEENKVAENSFVVV 72 (403)
Q Consensus 2 kI~VK--tl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy-------~GKiL~D~~tL~d~gI~~~s~I~v 72 (403)
+|.|. ..+.+.+++.|++++||.+||++|+.++| +|+++||||| .||.|+|+++|++|||++|++|||
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~G---ip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFA---TPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSC---CCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHC---CCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 45554 33456788999999999999999999999 9999999997 489999999999999999999999
Q ss_pred EEecC
Q 015622 73 MLTKS 77 (403)
Q Consensus 73 ~v~k~ 77 (403)
+-+.|
T Consensus 81 vd~~P 85 (86)
T 4b6w_A 81 VDLQP 85 (86)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 97653
No 85
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.43 E-value=3.9e-13 Score=110.34 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=62.4
Q ss_pred CEEEEEeCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeC--Ce---ec-CCcCchhhcccCCCCEEEE
Q 015622 1 MKVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ--GK---VL-KDVTTLEENKVAENSFVVV 72 (403)
Q Consensus 1 MkI~VKtl~g--k~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~--GK---iL-~D~~tL~d~gI~~~s~I~v 72 (403)
++|+|++..+ +.++++|++++||.+||++|+.++| +|+++|||+|. || .| +|+++|++|||++|++|+|
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~G---iP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTG---GCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHC---SCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHC---cCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 3678887665 4789999999999999999999999 99999999998 55 34 8999999999999999998
Q ss_pred E
Q 015622 73 M 73 (403)
Q Consensus 73 ~ 73 (403)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 7
No 86
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.43 E-value=1.8e-13 Score=114.48 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=65.5
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCe-----------e----cCCcCchhhccc
Q 015622 1 MKVFVKTLKGTHFEIEVK-PEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK-----------V----LKDVTTLEENKV 64 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~-~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GK-----------i----L~D~~tL~d~gI 64 (403)
|+|+||+.+|+. .|+|+ +++||.+||++|+.++| +|+++|+|+|.|+ . ++|+++|++|||
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~g---ip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQ---IPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSC---CCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhC---cCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 789999999965 79999 99999999999999999 9999999999998 4 588999999999
Q ss_pred CCCCEEEEEEe
Q 015622 65 AENSFVVVMLT 75 (403)
Q Consensus 65 ~~~s~I~v~v~ 75 (403)
++|++|||...
T Consensus 84 ~~G~~L~l~~~ 94 (107)
T 1wf9_A 84 AHGSMVYLAYE 94 (107)
T ss_dssp CTTCEEECCCS
T ss_pred CCCCEEEEEeC
Confidence 99999998865
No 87
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.41 E-value=7.5e-13 Score=113.91 Aligned_cols=41 Identities=29% Similarity=0.471 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCC-CC
Q 015622 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH-EF 401 (403)
Q Consensus 361 ~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~~~~~-d~ 401 (403)
+.|++|++|||+++.|++||.+|++|++.|++|||++.. |.
T Consensus 80 ~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~~~d~ 121 (126)
T 2lbc_A 80 EIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEE 121 (126)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCcc
Confidence 469999999999999999999999999999999999877 54
No 88
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.40 E-value=7.1e-13 Score=109.22 Aligned_cols=71 Identities=11% Similarity=0.019 Sum_probs=62.5
Q ss_pred EEEEEeCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCe---e----cCCcCchhhcccCCCCEEEE
Q 015622 2 KVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK---V----LKDVTTLEENKVAENSFVVV 72 (403)
Q Consensus 2 kI~VKtl~g--k~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GK---i----L~D~~tL~d~gI~~~s~I~v 72 (403)
+|+|++... +.++++|++++||.+||++|+.++| +|+++|||+|.|| . ++|+++|++|+|++|++|+|
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~G---ip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCG---TSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHC---CCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHC---cCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 577776443 4789999999999999999999999 9999999999884 3 48899999999999999999
Q ss_pred EEe
Q 015622 73 MLT 75 (403)
Q Consensus 73 ~v~ 75 (403)
+-.
T Consensus 93 vd~ 95 (97)
T 2kj6_A 93 IDL 95 (97)
T ss_dssp EEC
T ss_pred EeC
Confidence 864
No 89
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.38 E-value=3.6e-14 Score=129.95 Aligned_cols=71 Identities=21% Similarity=0.257 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+++|++|.|+|++++||.+||.+|+...| +|+++|||||+|++|+|+.+|+ ++++|||+++.+..
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keG---IP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG 71 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMG---FEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG 71 (189)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhC---cChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence 89999999999999999999999999999999999 9999999999999999999998 88999999987643
No 90
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=1e-12 Score=107.28 Aligned_cols=73 Identities=22% Similarity=0.209 Sum_probs=63.6
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCC---ee----cCCcCchhhcccCCCCEEEE
Q 015622 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV----LKDVTTLEENKVAENSFVVV 72 (403)
Q Consensus 1 MkI~VKtl~gk-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~G---Ki----L~D~~tL~d~gI~~~s~I~v 72 (403)
++|+|+..... .++++|++++||.+||++|+.++| +|+++|||+|.| |. |+|+++|++|||++|++|||
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~g---ip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVG---SPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTC---SCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHC---CCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 46788875543 688999999999999999999999 999999999986 54 58999999999999999998
Q ss_pred EEec
Q 015622 73 MLTK 76 (403)
Q Consensus 73 ~v~k 76 (403)
+...
T Consensus 85 ~d~~ 88 (95)
T 1v6e_A 85 IDHS 88 (95)
T ss_dssp BCCS
T ss_pred EECC
Confidence 8643
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.36 E-value=1e-12 Score=105.31 Aligned_cols=71 Identities=17% Similarity=0.304 Sum_probs=63.6
Q ss_pred CEEEEEeCCCcEEEEE-eCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeC--CeecC---CcCchhhcccCCCCEEEEEE
Q 015622 1 MKVFVKTLKGTHFEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ--GKVLK---DVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~gk~~~ie-V~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~--GKiL~---D~~tL~d~gI~~~s~I~v~v 74 (403)
|+|+||+.+|+. .++ |++++||.+||.+|++++| +++++|+|+|+ +|.|. |+++|++|||++|++|||..
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~g---i~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITG---IAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTC---CCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhC---CCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 899999999964 477 9999999999999999999 99999999987 48874 68899999999999998875
Q ss_pred e
Q 015622 75 T 75 (403)
Q Consensus 75 ~ 75 (403)
.
T Consensus 77 ~ 77 (86)
T 2kzr_A 77 D 77 (86)
T ss_dssp C
T ss_pred C
Confidence 4
No 92
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.29 E-value=5.4e-12 Score=103.32 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+.+|+.+.+.|.+++++..||++++++.| ++++.+||+|.|+.|.++.|+++|++.++++|+|+++.+..
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 68999999999999999999999999999999999 99999999999999999999999999999999999987654
No 93
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.28 E-value=2.4e-12 Score=127.20 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=65.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEE---eCCeecCCcCchhhcccCCCCEEEEEEe
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKVLKDVTTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLi---y~GKiL~D~~tL~d~gI~~~s~I~v~v~ 75 (403)
|+|+|| ++|++|.|+|++++||.+||++|++++| +|+++|||| |+||+|+|+.+|++|||++|++|+||.+
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tg---Vpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs 79 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQ---VRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGS 79 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEcc
Confidence 578999 6899999999999999999999999999 999999999 8999999999999999999999999953
No 94
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.28 E-value=4.6e-12 Score=88.92 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCC
Q 015622 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (403)
Q Consensus 172 ~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~GI 214 (403)
.++.|++|++|| |+|++|++||++++||+++|++||++||
T Consensus 4 ~e~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~~~L~~~~ 43 (43)
T 2g3q_A 4 KSLAVEELSGMG---FTEEEAHNALEKCNWDLEAATNFLLDSA 43 (43)
T ss_dssp HHHHHHHHHTTT---SCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCcCHHHHHHHHHcCC
Confidence 368999999999 9999999999999999999999999986
No 95
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.28 E-value=9.8e-12 Score=106.27 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=64.3
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCC---ee----cCCcCchhhcccCCCCEEEE
Q 015622 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV----LKDVTTLEENKVAENSFVVV 72 (403)
Q Consensus 1 MkI~VKtl~gk-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~G---Ki----L~D~~tL~d~gI~~~s~I~v 72 (403)
|+|+|+...+. .++++|++++||.+||.+|+.++| +|+++|||+|.| +. ++|+++|.+|||.+|++|||
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~G---ip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVG---TTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHC---CCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhC---CCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 46788876553 688999999999999999999999 999999999987 43 48899999999999999999
Q ss_pred EEecC
Q 015622 73 MLTKS 77 (403)
Q Consensus 73 ~v~k~ 77 (403)
+...+
T Consensus 84 vd~~p 88 (122)
T 1t0y_A 84 VDVTG 88 (122)
T ss_dssp EECTT
T ss_pred EeCCC
Confidence 97543
No 96
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.27 E-value=4.8e-12 Score=98.74 Aligned_cols=44 Identities=36% Similarity=0.389 Sum_probs=40.7
Q ss_pred CchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCC
Q 015622 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (403)
Q Consensus 169 g~~~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~GIP 215 (403)
.+.+++.|++||+|| |+|++|++|||+++||+|||||||++|+.
T Consensus 26 ~~~~ee~I~~L~eMG---F~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 26 VAASEEQIQKLVAMG---FDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp SCCCHHHHHHHHTTT---CCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred CcccHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 345789999999999 99999999999999999999999999854
No 97
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.25 E-value=6.4e-12 Score=98.19 Aligned_cols=45 Identities=18% Similarity=0.353 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCCHHHHHHHHHcCCCCC
Q 015622 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (403)
Q Consensus 170 ~~~e~~v~~i~eMG~~~f-~reqv~~ALrAafnNpdrAvEyL~~GIP~~ 217 (403)
..|++.|++|++|| | +|+.+++||+++++|++||||||++|||+.
T Consensus 27 ~~ye~qi~qL~eMG---F~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 27 GRYQQELEELKALG---FANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp TTSHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 56899999999999 9 899999999999999999999999998864
No 98
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.23 E-value=3e-11 Score=93.82 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=68.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEE
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v 74 (403)
|+|+|++.+|+.+.+.|.+++++..|+.+++++.| +++..+||+|.|+.|.++.|.++|++.+|++|+|++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHT---CCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999 999999999999999999999999999999999874
No 99
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.23 E-value=9.7e-12 Score=88.68 Aligned_cols=40 Identities=30% Similarity=0.473 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015622 171 NLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (403)
Q Consensus 171 ~~e~~v~~i~eMG~~~f-~reqv~~ALrAafnNpdrAvEyL~~G 213 (403)
.|+..|++|++|| | +|+.+++||+++++|++||||||++|
T Consensus 6 ~~~~~i~~L~~MG---F~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 6 RYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 5789999999999 9 78899999999999999999999986
No 100
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.21 E-value=7.6e-11 Score=100.35 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015622 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 358 ee~~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~~~ 397 (403)
+..+.|.+|++|||++.+|.+|+..|++|.+.|+.|||..
T Consensus 75 ~~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 75 EFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3556799999999999999999999999999999999965
No 101
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.21 E-value=4.1e-11 Score=97.50 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+.+|+.+.+.|.+++++..||+.++++.| +++..+||+|.|+.|.++.|.++|++.+|++|+|++...+
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g 80 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 80 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTT---CCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999987654
No 102
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.19 E-value=2.2e-11 Score=89.43 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=40.6
Q ss_pred chHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCCHHHHHHHHHcCCC
Q 015622 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIP 215 (403)
Q Consensus 170 ~~~e~~v~~i~eMG~~~f-~reqv~~ALrAafnNpdrAvEyL~~GIP 215 (403)
..|+..|++|++|| | +|+.+++||++++||.+||||||++|++
T Consensus 9 ~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gnve~Ave~L~~~~~ 52 (53)
T 2knz_A 9 VRFQQQLEQLNSMG---FINREANLQALIATGGDINAAIERLLGSQL 52 (53)
T ss_dssp HHHHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 45899999999999 9 9999999999999999999999999865
No 103
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.19 E-value=9.1e-11 Score=92.82 Aligned_cols=70 Identities=13% Similarity=0.236 Sum_probs=67.0
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEE
Q 015622 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 1 MkI~VKtl~gk-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~ 73 (403)
|+|+|++.+|+ .+.+.|..++++..||..++++.| ++++.+||+|.|+.|.++.|.++|++.+|++|+|+
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMG---LSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHT---CTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 67999999996 899999999999999999999999 99999999999999999999999999999999986
No 104
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.17 E-value=2.6e-11 Score=96.68 Aligned_cols=44 Identities=27% Similarity=0.381 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHc--C-CCCCC
Q 015622 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS--G-IPEQT 218 (403)
Q Consensus 172 ~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~--G-IP~~~ 218 (403)
.++.|++||+|| |+|++|++|||+++||++||+|||++ | ||+.+
T Consensus 29 ~ee~I~~Lv~MG---F~~~~A~~AL~~t~gdve~A~e~L~sh~~~ip~~~ 75 (83)
T 1veg_A 29 SQESINQLVYMG---FDTVVAEAALRVFGGNVQLAAQTLAHHGGSLPPDL 75 (83)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHTTTCHHHHHHHHHHHTSSCCTTS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCCchhh
Confidence 478999999999 99999999999999999999999999 6 77654
No 105
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.16 E-value=8.8e-11 Score=95.81 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=69.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~ 77 (403)
|+|+|++.+|+.+.+.|..++++..|+..++++.| ++++.+||+|.|+.|.++.|+.+|++.++++|+|++...
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhC---CCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 57889988999999999999999999999999999 999999999999999999999999999999999998754
No 106
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.15 E-value=3.6e-11 Score=84.35 Aligned_cols=38 Identities=37% Similarity=0.541 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015622 360 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 360 ~~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~~~ 397 (403)
.++|++|++|||++++|++||.+|++|.+.|++|||++
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 47899999999999999999999999999999999986
No 107
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.15 E-value=1e-10 Score=97.51 Aligned_cols=75 Identities=15% Similarity=0.229 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+|++.+|+.+.|.|..++++..||.+++++.| +++..+||+|.|+.|.++.|+.+|++.++++|+|++....
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHT---CCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999987654
No 108
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.14 E-value=4.5e-11 Score=90.77 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCCC
Q 015622 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (403)
Q Consensus 172 ~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~GIP~ 216 (403)
.++.|++|++|| |+|++|++|||+++||++||+|||+++..+
T Consensus 9 ~~~~I~~L~~MG---F~~~~a~~AL~~~~~nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 9 DEKALKHITEMG---FSKEASRQALMDNGNNLEAALNVLLTSNKQ 50 (63)
T ss_dssp CHHHHHHHHTTT---CCHHHHHHHHHHTTSCHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 478999999999 999999999999999999999999998543
No 109
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.13 E-value=5.3e-11 Score=87.02 Aligned_cols=41 Identities=27% Similarity=0.428 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015622 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (403)
Q Consensus 170 ~~~e~~v~~i~eMG~~~f-~reqv~~ALrAafnNpdrAvEyL~~G 213 (403)
..|+..|++|++|| | +|+.+++||++++||++||||||++|
T Consensus 10 ~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 10 VRFQQQLEQLSAMG---FLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 45889999999999 9 99999999999999999999999876
No 110
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.09 E-value=1.7e-10 Score=96.99 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+|++.+|+.+.|.|..++++..||..++++.| +++..+||+|.|+.|.++.|+.+|++.++++|+|++....
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~g---i~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQG---ISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHT---CCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 67999999999999999999999999999999999 9999999999999999999999999999999999987543
No 111
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.09 E-value=8.9e-11 Score=87.64 Aligned_cols=41 Identities=29% Similarity=0.464 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015622 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (403)
Q Consensus 170 ~~~e~~v~~i~eMG~~~f-~reqv~~ALrAafnNpdrAvEyL~~G 213 (403)
..|+..|++|++|| | +|+.+++||+++++|++||||||++|
T Consensus 15 ~~~~~qi~~L~~MG---F~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 15 ERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHTHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 56889999999999 9 79999999999999999999999988
No 112
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.07 E-value=1.3e-10 Score=88.91 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCCHHHHHHHHHcCCCCC
Q 015622 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (403)
Q Consensus 170 ~~~e~~v~~i~eMG~~~f-~reqv~~ALrAafnNpdrAvEyL~~GIP~~ 217 (403)
..|+..|.+|++|| | +|+.+++|||++++|++||||||++++++.
T Consensus 17 ~~y~~ql~qL~~MG---F~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 17 VRFSKEMECLQAMG---FVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp HHTHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 45889999999999 9 788889999999999999999999998863
No 113
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=7.2e-11 Score=89.65 Aligned_cols=43 Identities=40% Similarity=0.677 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCCCC
Q 015622 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 217 (403)
Q Consensus 172 ~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~GIP~~ 217 (403)
.++.|++||+|| |+|++|++|||+++||++||+|||+.++++.
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~A~e~L~~~~~d~ 51 (63)
T 2dak_A 9 PEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSHIDDL 51 (63)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCSHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCc
Confidence 578999999999 9999999999999999999999999997753
No 114
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.06 E-value=3.1e-10 Score=94.81 Aligned_cols=73 Identities=11% Similarity=0.157 Sum_probs=68.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~ 77 (403)
|+|+|++ +|+.+.+.|..++++..||.+++++.| +++..+||+|.|+.|.++.|..+|++.++++|+|++...
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~g---i~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhC---CCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 5788998 999999999999999999999999999 899999999999999999999999999999999998754
No 115
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.05 E-value=1.6e-10 Score=87.73 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015622 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 401 (403)
Q Consensus 359 e~~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~~~~~d~ 401 (403)
+.++|++|++|||++++|++||.+|++|.+.|++|||++..+.
T Consensus 9 ~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 9 DEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQK 51 (63)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 4578999999999999999999999999999999999986543
No 116
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.03 E-value=2.1e-10 Score=89.65 Aligned_cols=41 Identities=20% Similarity=0.455 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCC
Q 015622 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (403)
Q Consensus 172 ~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~GIP 215 (403)
.++.|++|++|| |+|++|++|||+++||++||||||+++..
T Consensus 29 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 29 DQSSVDTLLSFG---FAEDVARKALKASGGDIEKATDWVFNNSG 69 (73)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 478999999999 99999999999999999999999998743
No 117
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.03 E-value=2.5e-10 Score=78.48 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHH
Q 015622 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 211 (403)
Q Consensus 170 ~~~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~ 211 (403)
+++++.|++|++|| |+|+++++||+++.+|+++|++||+
T Consensus 2 ~~~~~~i~~L~~mG---f~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMG---FDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 45788999999999 9999999999999999999999994
No 118
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.02 E-value=6.2e-10 Score=90.97 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=62.0
Q ss_pred EEEEEe---CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCC------ee-c-CCcCchhhcccCCCCEE
Q 015622 2 KVFVKT---LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG------KV-L-KDVTTLEENKVAENSFV 70 (403)
Q Consensus 2 kI~VKt---l~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~G------Ki-L-~D~~tL~d~gI~~~s~I 70 (403)
+|+|+. .+|+.+++.+..++||.+||.+|+..+| +|+..|||+|.+ .+ | +|.++|.+|+|.+|++|
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~g---ip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLK---VPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTT---CCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHC---CChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 567775 4677899999999999999999999999 999999999873 22 5 56789999999999999
Q ss_pred EEEEec
Q 015622 71 VVMLTK 76 (403)
Q Consensus 71 ~v~v~k 76 (403)
||....
T Consensus 88 ~V~d~~ 93 (97)
T 1wjn_A 88 LVRWSG 93 (97)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 998754
No 119
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.00 E-value=2e-10 Score=87.53 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHhhC-CHHHHHHHHHcCCCCC
Q 015622 171 NLEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 217 (403)
Q Consensus 171 ~~e~~v~~i~eMG~~~f~reqv~~ALrAafn-NpdrAvEyL~~GIP~~ 217 (403)
..+..|++|++|| |+|+.|++||++++| |+++|++||+.++++.
T Consensus 8 ~~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~ 52 (64)
T 2crn_A 8 SSPSLLEPLLAMG---FPVHTALKALAATGRKTAEEALAWLHDHCNDP 52 (64)
T ss_dssp CSCSSHHHHHHTS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHSSST
T ss_pred CCHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 3566899999999 999999999999999 9999999999998753
No 120
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=4.7e-10 Score=87.83 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhC-CHHHHHHHHHcCCCCC
Q 015622 172 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 217 (403)
Q Consensus 172 ~e~~v~~i~eMG~~~f~reqv~~ALrAafn-NpdrAvEyL~~GIP~~ 217 (403)
.++.|++||+|| |+|++|++|||+++| |.++|+|||+.++++.
T Consensus 9 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~ 52 (74)
T 2dag_A 9 DESVIIQLVEMG---FPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP 52 (74)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTST
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 478999999999 999999999999997 7999999999998754
No 121
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.98 E-value=3.8e-10 Score=87.98 Aligned_cols=47 Identities=28% Similarity=0.374 Sum_probs=43.0
Q ss_pred ccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCC
Q 015622 353 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 399 (403)
Q Consensus 353 ~~lt~ee~~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~~~~~ 399 (403)
.+.+++..++|++|++|||+|++|++||.+|+||.+.|++|||++..
T Consensus 23 ~~~~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 23 QGRVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp CCCSCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred ccCCcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 46777778899999999999999999999999999999999998754
No 122
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.96 E-value=7.2e-10 Score=88.96 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCCC
Q 015622 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 402 (403)
Q Consensus 359 e~~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~~~~~d~~ 402 (403)
+.++|++|++|||+|+.|++||.+|++|.+.|++|||+|..|.|
T Consensus 21 n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D~D 64 (85)
T 2dkl_A 21 MSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVDVD 64 (85)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCCSS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCCcc
Confidence 35679999999999999999999999999999999999988876
No 123
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.96 E-value=6e-10 Score=84.82 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHhccCCCCC
Q 015622 361 EAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHMHEFE 402 (403)
Q Consensus 361 ~ai~~l~~lgf~~~~~~~a~~~c~~-ne~~a~~~l~~~~~d~~ 402 (403)
+.|++|++|||+++.|++||.+|++ |++.|++|||++..|.|
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~d 63 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPSS 63 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Confidence 5699999999999999999999997 99999999999887755
No 124
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.96 E-value=6.3e-10 Score=82.80 Aligned_cols=48 Identities=27% Similarity=0.433 Sum_probs=45.4
Q ss_pred cccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCC
Q 015622 352 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 399 (403)
Q Consensus 352 ~~~lt~ee~~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~~~~~ 399 (403)
...|++.|.++|+.|+.|||++++|+.|+-+|+.|.|.|++|||+|+.
T Consensus 12 l~~ls~se~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 12 LQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSG 59 (63)
T ss_dssp HHTCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred HHhhCcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 457999999999999999999999999999999999999999999865
No 125
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=5.1e-10 Score=79.98 Aligned_cols=38 Identities=37% Similarity=0.597 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015622 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (403)
Q Consensus 172 ~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~G 213 (403)
+++.|++|++|| |+|++|++|||++ ||+++|+|||++.
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~~-~n~e~A~~~L~~h 46 (47)
T 2ekk_A 9 NQQQLQQLMDMG---FTREHAMEALLNT-STMEQATEYLLTH 46 (47)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHS-CSHHHHHHHHHTC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHc-CCHHHHHHHHHcC
Confidence 478999999999 9999999999999 6999999999864
No 126
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.96 E-value=4.2e-10 Score=85.71 Aligned_cols=40 Identities=23% Similarity=0.408 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhhC-CHHHHHHHHHcCCC
Q 015622 173 EATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIP 215 (403)
Q Consensus 173 e~~v~~i~eMG~~~f~reqv~~ALrAafn-NpdrAvEyL~~GIP 215 (403)
+..|++||+|| |+|++|++|||++.| |+++|+|||++++-
T Consensus 20 e~~i~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 20 GSALDVLLSMG---FPRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp CCHHHHHHHHT---CCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 46899999999 999999999999998 99999999998854
No 127
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.95 E-value=4.2e-10 Score=85.69 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhh-CCHHHHHHHHHcCCCCC
Q 015622 173 EATVQQILDMGGGSWDRETVIRALRAAY-NNPERAVEYLYSGIPEQ 217 (403)
Q Consensus 173 e~~v~~i~eMG~~~f~reqv~~ALrAaf-nNpdrAvEyL~~GIP~~ 217 (403)
++.|++||+|| |+|++|++|||+++ +|+++|++||+.++++.
T Consensus 10 ~~~v~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~ 52 (64)
T 1whc_A 10 LTALESLIEMG---FPRGRAEKALALTGNQGIEAAMDWLMEHEDDP 52 (64)
T ss_dssp CCHHHHHHTTT---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCc
Confidence 45899999999 99999999999995 89999999999997753
No 128
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.95 E-value=7.7e-10 Score=79.82 Aligned_cols=42 Identities=26% Similarity=0.437 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015622 357 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 357 ~ee~~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~~~~ 398 (403)
++..+.|++|++|||+|++|+.||.+|++|.+.|++|||++.
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~gi 47 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGI 47 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHCC
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 456678999999999999999999999999999999999863
No 129
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.94 E-value=8.1e-10 Score=75.87 Aligned_cols=39 Identities=33% Similarity=0.488 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHh
Q 015622 357 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395 (403)
Q Consensus 357 ~ee~~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~ 395 (403)
++..++|++|++|||++++|++||.+|++|.+.|++|||
T Consensus 2 ~~~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 345678999999999999999999999999999999997
No 130
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=8.3e-10 Score=86.43 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHhccCCCCC
Q 015622 359 EREAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHMHEFE 402 (403)
Q Consensus 359 e~~ai~~l~~lgf~~~~~~~a~~~c~~-ne~~a~~~l~~~~~d~~ 402 (403)
+.+.|++|++|||+++.|++||++|++ |++.|++|||++..|.+
T Consensus 9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d 53 (74)
T 2dag_A 9 DESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPD 53 (74)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcc
Confidence 456799999999999999999999995 89999999999877654
No 131
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=8e-10 Score=88.36 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCCC
Q 015622 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 402 (403)
Q Consensus 359 e~~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~~~~~d~~ 402 (403)
+.++|++|++|||+++.|++||.+|++|++.|++|||++..|.+
T Consensus 29 ~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d~d 72 (83)
T 2dai_A 29 DEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPT 72 (83)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGCST
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCcc
Confidence 45679999999999999999999999999999999999876643
No 132
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.91 E-value=1.1e-09 Score=83.26 Aligned_cols=42 Identities=29% Similarity=0.442 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHh-CCCHHHHHHHHhccCCCCC
Q 015622 361 EAIERLEAMGFDRALVLEVFFAC-NKNEELAANYLLDHMHEFE 402 (403)
Q Consensus 361 ~ai~~l~~lgf~~~~~~~a~~~c-~~ne~~a~~~l~~~~~d~~ 402 (403)
+.|++|++|||++..|++||.+| ++|++.|++|||++..|.+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~d 53 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPD 53 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCcc
Confidence 46999999999999999999999 7999999999999877654
No 133
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.89 E-value=1.3e-09 Score=85.11 Aligned_cols=46 Identities=13% Similarity=0.287 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015622 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 401 (403)
Q Consensus 356 t~ee~~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~~~~~d~ 401 (403)
++.+.+.|++|++|||+|++|++||.+|++|.+.|++|||++..|.
T Consensus 26 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~d~ 71 (73)
T 1wiv_A 26 SDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGPS 71 (73)
T ss_dssp CSSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCSS
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 3445677999999999999999999999999999999999987664
No 134
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.88 E-value=1.6e-09 Score=80.71 Aligned_cols=43 Identities=28% Similarity=0.550 Sum_probs=38.4
Q ss_pred cCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015622 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (403)
Q Consensus 167 ~~g~~~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~G 213 (403)
+.++ -++.|..|++|| |.++|+++||++.-||.|||+|||++-
T Consensus 15 ls~s-e~e~V~~LvsMG---Fs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 15 LSPS-ERQCVETVVNMG---YSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp CCHH-HHHHHHHHHHHH---CCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hCcc-hHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3344 467899999999 999999999999999999999999975
No 135
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=6.5e-10 Score=84.34 Aligned_cols=43 Identities=23% Similarity=0.520 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015622 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 401 (403)
Q Consensus 359 e~~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~~~~~d~ 401 (403)
+.+.|++|++|||+|+.|++||.+|++|.+.|++|||++..|.
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~d~ 51 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDL 51 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCc
Confidence 3467999999999999999999999999999999999986554
No 136
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=98.88 E-value=1.7e-09 Score=78.98 Aligned_cols=38 Identities=32% Similarity=0.473 Sum_probs=36.0
Q ss_pred HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015622 361 EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 361 ~ai~~l~~lgf-~~~~~~~a~~~c~~ne~~a~~~l~~~~ 398 (403)
+.|++|++||| +|+.+++||.+|++|.+.|++|||+++
T Consensus 14 ~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 14 QQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 57999999999 999999999999999999999999863
No 137
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=2.1e-09 Score=85.95 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCCC
Q 015622 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (403)
Q Consensus 172 ~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~GIP~ 216 (403)
.++.|++||+|| |+|++|++|||+++||.++|++||+.++.+
T Consensus 29 ~e~~i~~L~~MG---F~~~~a~~AL~~t~~nve~A~ewL~~~~~d 70 (83)
T 2dai_A 29 DEAALRQLTEMG---FPENRATKALQLNHMSVPQAMEWLIEHAED 70 (83)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHGGGC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 578999999999 999999999999999999999999999764
No 138
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.86 E-value=2.2e-09 Score=81.65 Aligned_cols=42 Identities=31% Similarity=0.396 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHhccCCCCC
Q 015622 361 EAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHMHEFE 402 (403)
Q Consensus 361 ~ai~~l~~lgf~~~~~~~a~~~c~~-ne~~a~~~l~~~~~d~~ 402 (403)
+.|++|++|||+++.|++||++|++ |++.|.||||++..|.+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d 53 (64)
T 2crn_A 11 SLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPS 53 (64)
T ss_dssp SSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcc
Confidence 3599999999999999999999976 99999999999977643
No 139
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.86 E-value=1.9e-09 Score=86.36 Aligned_cols=43 Identities=26% Similarity=0.365 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhC-CHHHHHHHHHcCCCCC
Q 015622 172 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 217 (403)
Q Consensus 172 ~e~~v~~i~eMG~~~f~reqv~~ALrAafn-NpdrAvEyL~~GIP~~ 217 (403)
.+..|++||+|| |+|++|++|||+++| |.++|++||++++++.
T Consensus 29 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~ 72 (84)
T 1vek_A 29 NEEIVAQLVSMG---FSQLHCQKAAINTSNAGVEEAMNWLLSHMDDP 72 (84)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 478999999999 999999999999985 9999999999997753
No 140
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.85 E-value=2.9e-09 Score=76.68 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015622 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 361 ~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~~~ 397 (403)
+.|++|++|||+|++||+|+..|++|.++|+|+|++-
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 6799999999999999999999999999999999974
No 141
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=2.6e-09 Score=76.22 Aligned_cols=38 Identities=32% Similarity=0.579 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015622 360 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 360 ~~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~~~~ 398 (403)
.+.|++|++|||+++.|++||.+|+ |.+.|++|||+|+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTHP 47 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcCC
Confidence 4569999999999999999999996 9999999999874
No 142
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=98.81 E-value=5.5e-09 Score=76.52 Aligned_cols=38 Identities=29% Similarity=0.471 Sum_probs=35.9
Q ss_pred HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015622 361 EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 361 ~ai~~l~~lgf-~~~~~~~a~~~c~~ne~~a~~~l~~~~ 398 (403)
+.|++|++||| +|+.+++||.+|++|.+.|++|||++.
T Consensus 13 ~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 13 QQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 45999999999 999999999999999999999999874
No 143
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.77 E-value=6.1e-09 Score=89.38 Aligned_cols=41 Identities=41% Similarity=0.608 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCC
Q 015622 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (403)
Q Consensus 172 ~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~GIP 215 (403)
.+..|++|++|| |+|++|++|||+++||++||+|||+++++
T Consensus 78 ~e~~v~~L~~MG---F~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 78 PEEIVAIITSMG---FQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CHHHHHHHHHHT---SCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 578999999999 99999999999999999999999999987
No 144
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.77 E-value=6e-09 Score=83.45 Aligned_cols=44 Identities=30% Similarity=0.451 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHh-CCCHHHHHHHHhccCCCCC
Q 015622 359 EREAIERLEAMGFDRALVLEVFFAC-NKNEELAANYLLDHMHEFE 402 (403)
Q Consensus 359 e~~ai~~l~~lgf~~~~~~~a~~~c-~~ne~~a~~~l~~~~~d~~ 402 (403)
+.++|++|++|||+|..|++||++| +||++.|++|||+|..|.+
T Consensus 29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d 73 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPD 73 (84)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCST
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccc
Confidence 4577999999999999999997777 5899999999999877643
No 145
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.76 E-value=7.7e-09 Score=82.39 Aligned_cols=41 Identities=32% Similarity=0.386 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015622 360 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400 (403)
Q Consensus 360 ~~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~~~~~d 400 (403)
.+.|++|++|||+|++|++||.+|++|.+.|++|||+|..+
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 45699999999999999999999999999999999998664
No 146
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.76 E-value=6.6e-09 Score=75.14 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015622 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 361 ~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~~~ 397 (403)
+.|++|++|||+|++||+|+..|++|.|+|+|+|++.
T Consensus 11 ~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 11 SEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3499999999999999999999999999999999975
No 147
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.76 E-value=6.5e-09 Score=76.47 Aligned_cols=41 Identities=29% Similarity=0.442 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCCHHHHHHHHHcCC
Q 015622 171 NLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGI 214 (403)
Q Consensus 171 ~~e~~v~~i~eMG~~~f-~reqv~~ALrAafnNpdrAvEyL~~GI 214 (403)
.|+..|++|++|| | +|+.+++||+++.+|.+||||||+++.
T Consensus 8 ~~~~~l~~L~~MG---F~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 8 HFQVQLEQLRSMG---FLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp SSHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4788999999999 9 556689999999999999999999873
No 148
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.74 E-value=1.1e-08 Score=85.53 Aligned_cols=42 Identities=33% Similarity=0.509 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCCHHHHHHHHHcCCC
Q 015622 171 NLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIP 215 (403)
Q Consensus 171 ~~e~~v~~i~eMG~~~f-~reqv~~ALrAafnNpdrAvEyL~~GIP 215 (403)
.+++.|++|++|| | +|+.+++||+++++|++||||||++|.+
T Consensus 65 ~~~~qL~qL~eMG---F~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 65 QWQPQLQQLRDMG---IQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp TTHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 4788999999999 9 7899999999999999999999999854
No 149
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.72 E-value=4.9e-08 Score=82.50 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=68.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEec
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k 76 (403)
|+|+|++.+|+.+.+.|..++++..|+...+++.| ++...+||+|.|+.|.++.|..++++.+|++|.|++..
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~G---l~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhC---CChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 46888888899899999999999999999999999 99999999999999999999999999999999999754
No 150
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.68 E-value=1.8e-08 Score=80.79 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015622 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (403)
Q Consensus 173 e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~G 213 (403)
++.|++|++|| |+|++|++||++.++|+++|+|||+..
T Consensus 22 ~~~I~qL~~MG---F~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMG---FPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 78999999999 999999999999999999999999986
No 151
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.68 E-value=2.4e-08 Score=71.02 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=34.0
Q ss_pred HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015622 361 EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 361 ~ai~~l~~lgf-~~~~~~~a~~~c~~ne~~a~~~l~~~ 397 (403)
+.|++|++||| +++.+++|+.+|++|.+.|++|||++
T Consensus 9 ~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 9 HQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 45999999999 68889999999999999999999974
No 152
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.63 E-value=4.2e-08 Score=76.58 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015622 360 REAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHEF 401 (403)
Q Consensus 360 ~~ai~~l~~lgf-~~~~~~~a~~~c~~ne~~a~~~l~~~~~d~ 401 (403)
.+.|++|++||| +|+.+++||.+|++|.+.|++|||++...+
T Consensus 30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 30 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 346999999999 799999999999999999999999876543
No 153
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.61 E-value=5e-08 Score=71.72 Aligned_cols=41 Identities=24% Similarity=0.329 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCC-hHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015622 360 REAIERLEAMGFD-RALVLEVFFACNKNEELAANYLLDHMHE 400 (403)
Q Consensus 360 ~~ai~~l~~lgf~-~~~~~~a~~~c~~ne~~a~~~l~~~~~d 400 (403)
.+.|++|++|||+ ++.+++||.+|++|.+.|++|||++...
T Consensus 10 ~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 10 QVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 3469999999995 5567999999999999999999987643
No 154
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.60 E-value=4.3e-08 Score=73.06 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=35.1
Q ss_pred HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015622 361 EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 361 ~ai~~l~~lgf-~~~~~~~a~~~c~~ne~~a~~~l~~~~ 398 (403)
+.|++|++||| +|+.+++||.+|++|.+.|++|||++.
T Consensus 19 ~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 19 HQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 45999999999 688999999999999999999999864
No 155
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=98.60 E-value=9.3e-09 Score=73.49 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCC
Q 015622 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (403)
Q Consensus 170 ~~~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~GI 214 (403)
++.+++|++|++|| |+|.+|++||.+.-+|.++|++||+++.
T Consensus 2 ~~e~eaI~rL~~mG---F~~~~a~~Al~a~~~n~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 2 SQEKEAIERLKALG---FPESLVIQAYFACEKNENLAANFLLSQN 43 (47)
T ss_dssp -CCHHHHTTTTTTT---CCHHHHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred cchHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 34578999999999 9999999999999999999999999874
No 156
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.53 E-value=9.1e-08 Score=69.34 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015622 360 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 360 ~~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~~~ 397 (403)
.+.|.+|+.|||+|+.|++|+..|+.|.|+|.|+|+|-
T Consensus 8 e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 8 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 45799999999999999999999999999999999974
No 157
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.51 E-value=7.1e-08 Score=76.40 Aligned_cols=69 Identities=10% Similarity=0.181 Sum_probs=58.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCee---c--CCcCchhhcccCCCCEEEEE
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV---L--KDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKi---L--~D~~tL~d~gI~~~s~I~v~ 73 (403)
|.|.||+.+| .+.|+|++++||.+||.+|.+.++ ++.+.|.|.++-.. | .++.+|+++||+.||.|+|.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~---i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFG---FQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTC---CCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcC---CCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6789998887 788999999999999999999999 88888877654443 3 46789999999999999874
No 158
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.47 E-value=4.2e-07 Score=83.87 Aligned_cols=76 Identities=11% Similarity=0.116 Sum_probs=70.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCCCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k~~ 80 (403)
++|+|+ .+|+.+.+.|..++++..||+..+++.| ++...+||+|.|+.|.++.|..++++.+|++|+|++......
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~G---i~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHS---SCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhC---CChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 467887 4888999999999999999999999999 999999999999999999999999999999999999876644
No 159
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.46 E-value=2e-07 Score=71.19 Aligned_cols=47 Identities=26% Similarity=0.291 Sum_probs=39.1
Q ss_pred CCHHH--HHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015622 355 VTPEE--REAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHEF 401 (403)
Q Consensus 355 lt~ee--~~ai~~l~~lgf-~~~~~~~a~~~c~~ne~~a~~~l~~~~~d~ 401 (403)
..+|+ ...|++|++||| +++.+++|+.+|++|.+.|++|||++..+.
T Consensus 13 ~~pe~~y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 13 QAPEVRFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp CCHHHHTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred CChHHHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 34555 345999999998 677779999999999999999999986553
No 160
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.46 E-value=2e-07 Score=67.10 Aligned_cols=38 Identities=34% Similarity=0.424 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015622 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (403)
Q Consensus 172 ~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~ 212 (403)
.+..|+.||+|| |+|++|++||+.+-||.|-|..+|+.
T Consensus 11 ~~~~Ia~Lm~mG---Fsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 11 VDAKIAKLMGEG---YAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp CHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 357999999999 99999999999999999999999974
No 161
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.43 E-value=1.6e-07 Score=79.78 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015622 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (403)
Q Consensus 172 ~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~G 213 (403)
+.+.|.+|++|| |++++|+.||+...||.|||||||+++
T Consensus 76 ~~~~v~~L~eMG---F~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 76 FLQLMSKFKEMG---FELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 567899999999 999999999999999999999999976
No 162
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.43 E-value=2.9e-07 Score=84.03 Aligned_cols=74 Identities=11% Similarity=0.138 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+|+ .+|+.+.+.|..++++..|++..+++.| +++..+||+|.|+.|.++.|..++++.++|+|.|++....
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqG---L~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~G 131 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIG 131 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTT---CCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCT
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhC---CCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 457776 4888999999999999999999999999 9999999999999999999999999999999999987654
No 163
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.42 E-value=1.9e-07 Score=86.17 Aligned_cols=75 Identities=27% Similarity=0.282 Sum_probs=56.3
Q ss_pred hCHHHHHHHHHcHHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHH
Q 015622 311 QNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 390 (403)
Q Consensus 311 ~nP~L~~lI~~n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~~~lt~ee~~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a 390 (403)
-|++..++...|++.|.+...+-... ... .....++-.+.|++|++|||+|++|++|+..|+||++.|
T Consensus 127 ~n~~aa~~~~~~~~~f~~~a~~~~~~--------~a~----~~~~~~~~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A 194 (201)
T 3k9o_A 127 QDAVVANQYKQNPEMFKQTARLWAHV--------YAG----APVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETA 194 (201)
T ss_dssp SCHHHHHHHHHCHHHHHHHHHHHHHH--------HHC----CCCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHH
T ss_pred ccHHHHHHHHHCHHHHHHHHHHHHHH--------hcc----cccccchhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHH
Confidence 36788888889999998876432110 000 001233446789999999999999999999999999999
Q ss_pred HHHHhcc
Q 015622 391 ANYLLDH 397 (403)
Q Consensus 391 ~~~l~~~ 397 (403)
+++||++
T Consensus 195 ~e~L~~~ 201 (201)
T 3k9o_A 195 TELLLSN 201 (201)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9999974
No 164
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.40 E-value=3.2e-07 Score=64.11 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015622 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 361 ~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~~~ 397 (403)
.+|.+|+.|||+++.|++|+..|+.|.|+|.|.|++.
T Consensus 6 ~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 6 SEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 5699999999999999999999999999999999875
No 165
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.39 E-value=3.5e-07 Score=66.16 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015622 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (403)
Q Consensus 173 e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~ 212 (403)
+..|..||+|| |+|++|++||+.+-||.|-|..+|+.
T Consensus 10 e~~I~~L~~lG---F~r~~ai~AL~~a~nnve~Aa~iL~e 46 (53)
T 2d9s_A 10 SSEIERLMSQG---YSYQDIQKALVIAHNNIEMAKNILRE 46 (53)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 56699999999 99999999999999999999999985
No 166
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.37 E-value=6.2e-07 Score=62.69 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=38.7
Q ss_pred CchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015622 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (403)
Q Consensus 169 g~~~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~ 212 (403)
|+.+|..|..||+|| |+|+.|++||-.+-||.+-|-+.|+.
T Consensus 1 ~~~~e~~I~~L~s~G---f~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 1 GSQLSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp CCHHHHHHHHHHHTT---BCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcC---CCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 567899999999999 99999999999999999999999974
No 167
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.24 E-value=1.1e-06 Score=63.70 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015622 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (403)
Q Consensus 172 ~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~ 212 (403)
.|..|..||+|| |+|+.|++||+.+-||.+-|-.+|+.
T Consensus 7 ~e~~Ia~L~smG---fsr~da~~AL~ia~Ndv~~AtNiLlE 44 (56)
T 2juj_A 7 LSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILRE 44 (56)
T ss_dssp HHHHHHHHHTTT---CCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred ChHHHHHHHHcC---CCHHHHHHHHHHhcccHHHHHHHHHH
Confidence 578999999999 99999999999999999999999986
No 168
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.24 E-value=9.9e-07 Score=73.58 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015622 360 REAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 360 ~~ai~~l~~lgf-~~~~~~~a~~~c~~ne~~a~~~l~~~~ 398 (403)
.+.|++|++||| +++.+++||.+|++|++.|++|||+++
T Consensus 67 ~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 67 QPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 456999999999 678999999999999999999999875
No 169
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=98.21 E-value=1.1e-06 Score=83.85 Aligned_cols=75 Identities=25% Similarity=0.259 Sum_probs=58.0
Q ss_pred hCHHHHHHHHHcHHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHH
Q 015622 311 QNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 390 (403)
Q Consensus 311 ~nP~L~~lI~~n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~~~lt~ee~~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a 390 (403)
-|++.+++...|++.|.+...+-... ... .....++-.+.|++|++|||+|+.|++|+..|+||++.|
T Consensus 179 ln~eaa~l~~~d~~~f~~~ar~~t~~--------yA~----~~~~~~~~~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A 246 (253)
T 3e46_A 179 QDAVVANQYKQNPEMFKQTARLWAHV--------YAG----APVSSPEYTKKIENLCAAGFDRNAVIVALSSKSWDVETA 246 (253)
T ss_dssp SCHHHHHHHHHCHHHHHHHHHHHHHH--------HHC----CSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHH
T ss_pred hhHHHHHHHHHCHHHHHHHHHHHHHH--------hcc----cccCcchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHH
Confidence 47889999999999999886432210 000 011234556789999999999999999999999999999
Q ss_pred HHHHhcc
Q 015622 391 ANYLLDH 397 (403)
Q Consensus 391 ~~~l~~~ 397 (403)
.++||++
T Consensus 247 ~e~L~~~ 253 (253)
T 3e46_A 247 TELLLSN 253 (253)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9999974
No 170
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.21 E-value=2e-06 Score=70.99 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=37.7
Q ss_pred HHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhccCC
Q 015622 359 EREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHMH 399 (403)
Q Consensus 359 e~~ai~~l~~l-gf~~~~~~~a~~~c~~ne~~a~~~l~~~~~ 399 (403)
-.+.|++|++| ||++++|+.||..|+||++.|+++||+...
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~ 80 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNP 80 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 34569999999 999999999999999999999999998764
No 171
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.18 E-value=9.3e-06 Score=63.56 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=64.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CcEEEeCCeecCCcCchhhcccCCCCEEEEEE
Q 015622 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 2 kI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~-~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v 74 (403)
.+.+|+.+...+.+.|.++.+|.+|-+.-+.+.| |+.+ .++|.|.|..|..+.++.+|.+.+++.|-||+
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~---I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVK---ISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHT---CCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcC---CCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 4567777777899999999999999999999999 9999 89999999999999999999999999999986
No 172
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.17 E-value=1.4e-06 Score=80.26 Aligned_cols=43 Identities=33% Similarity=0.470 Sum_probs=40.2
Q ss_pred cCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015622 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (403)
Q Consensus 167 ~~g~~~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~ 212 (403)
..++.+++.|++|++|| |+|++|+.||+...+|.++|+|||++
T Consensus 158 ~~~~~~eekV~~l~~MG---f~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 158 VSSPEYTKKIENLCAMG---FDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp CCCHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 35678999999999999 99999999999999999999999985
No 173
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.12 E-value=3.4e-07 Score=84.58 Aligned_cols=74 Identities=11% Similarity=0.139 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
|+|+| +.+|+.+.+.|..++++..||+..+++.| +++..+|++|.|+.|.++.|..++++.+||+|.|+.....
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqG---Ls~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~G 95 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (227)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhC---CCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccC
Confidence 56777 66888889999999999999999999999 9999999999999999999999999999999999987654
No 174
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.10 E-value=4e-06 Score=69.17 Aligned_cols=44 Identities=27% Similarity=0.571 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCCC
Q 015622 170 SNLEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 216 (403)
Q Consensus 170 ~~~e~~v~~i~eM-G~~~f~reqv~~ALrAafnNpdrAvEyL~~GIP~ 216 (403)
+++++.|+.||+| | |++++|+.||.-+.+|.++|++||+.|.|+
T Consensus 37 ~d~eekVk~L~EmtG---~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 37 ADFEEKVKQLIDITG---KNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHHHHTC---CCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred ccHHHHHHHHHHhhC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 4678999999999 9 999999999999999999999999999884
No 175
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.06 E-value=1.8e-05 Score=64.84 Aligned_cols=70 Identities=10% Similarity=0.202 Sum_probs=63.7
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEE
Q 015622 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 1 MkI~VKtl~gk-~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~ 73 (403)
++|+|+..+|+ .+.+.|..+.++..|....+++.| +++...||+|.|..|..+.|..++++.+|++|.|+
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g---~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMG---LSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTT---CSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35777777784 788999999999999999999999 88999999999999999999999999999999886
No 176
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.01 E-value=3.7e-06 Score=61.45 Aligned_cols=46 Identities=28% Similarity=0.256 Sum_probs=39.3
Q ss_pred CHHHHHH--HHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015622 356 TPEEREA--IERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHEF 401 (403)
Q Consensus 356 t~ee~~a--i~~l~~lgf-~~~~~~~a~~~c~~ne~~a~~~l~~~~~d~ 401 (403)
.+||+.+ +++|.+||| +++..++++..|++|.+.|++.|+.....|
T Consensus 4 ~~ee~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~~ 52 (54)
T 2cp8_A 4 GSSGQTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSGPS 52 (54)
T ss_dssp SSCTTHHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSSC
T ss_pred CHHHhhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccCCC
Confidence 3455555 889999999 999999999999999999999999765544
No 177
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.90 E-value=5e-06 Score=83.41 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015622 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 401 (403)
Q Consensus 359 e~~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~~~~~d~ 401 (403)
..++|++|++|||+|++|++|+.+|++|.+.|++|||++..|.
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip~~ 210 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 210 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTSSTTC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 4467999999999999999999999999999999999876553
No 178
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.78 E-value=6.8e-05 Score=61.02 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=51.6
Q ss_pred EEEEeC-CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecC--CcCchhhccc-CCCCEEEEEE
Q 015622 3 VFVKTL-KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLK--DVTTLEENKV-AENSFVVVML 74 (403)
Q Consensus 3 I~VKtl-~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~--D~~tL~d~gI-~~~s~I~v~v 74 (403)
|+|=.+ .++.+.|.|.+++||..||++|++++| |++++|+|||.||.|. ..+.-..|-- ...+-|+|+-
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTg---Ip~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhC---CCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 334334 456788999999999999999999999 9999999999998764 4555556633 3344555543
No 179
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.76 E-value=2.2e-05 Score=70.57 Aligned_cols=42 Identities=24% Similarity=0.453 Sum_probs=38.9
Q ss_pred CchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015622 169 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (403)
Q Consensus 169 g~~~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~G 213 (403)
.++.+++|++|++|| |+|+.|++|+.++.+|.+.|++||+.+
T Consensus 127 tpee~eaI~rL~~mG---F~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 127 TPEDDQAISRLCELG---FERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp CHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 355678999999999 999999999999999999999999875
No 180
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.75 E-value=5.2e-05 Score=70.21 Aligned_cols=73 Identities=11% Similarity=0.141 Sum_probs=66.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 2 kI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
+|+|++ +++.+.+.|..++++..||+..+++.| ++..++||+|.|+.+.++.+..++.+.++++|.++..+..
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g---~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhC---CChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 567776 677788999999999999999999999 9999999999999999999999999999999999976654
No 181
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.75 E-value=2.4e-05 Score=57.09 Aligned_cols=41 Identities=24% Similarity=0.347 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015622 170 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 213 (403)
Q Consensus 170 ~~~e~~v~~i~eMG~~~f-~reqv~~ALrAafnNpdrAvEyL~~G 213 (403)
+.|...+.+|.+|| | +++..++|||...+|.++||+.|+.+
T Consensus 7 e~~a~~L~~L~eMG---F~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 7 GQTAALMAHLFEMG---FCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp TTHHHHHHHHHHHT---CCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 45778999999999 9 99999999999999999999999975
No 182
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.71 E-value=0.00015 Score=58.97 Aligned_cols=72 Identities=11% Similarity=0.202 Sum_probs=66.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEec
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k 76 (403)
+.|+|+. +|..+.+.|-.++....|.+..+.+.| +.+...|++|.|..+.++.|-.++++.++++|.+++.+
T Consensus 22 IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~g---v~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 22 FPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLG---VSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp EEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHT---SCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred EEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcC---CChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 3677884 688888999999999999999999999 89999999999999999999999999999999999864
No 183
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.69 E-value=6.4e-05 Score=59.56 Aligned_cols=71 Identities=13% Similarity=0.213 Sum_probs=58.9
Q ss_pred EEEEEe--CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CCcEEEeCCeecCCcCchhhcccCCCCEEEE
Q 015622 2 KVFVKT--LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA--SQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72 (403)
Q Consensus 2 kI~VKt--l~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~--~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v 72 (403)
+|+|.. ..++.|.+.|....||..|+..+.+.++.+..+. .+.|+.-+|.+|.+++.|.+|+|.+||.|.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 566664 5789999999999999999999999998431111 2457788999999999999999999999876
No 184
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.54 E-value=0.0003 Score=56.66 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=67.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEec
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k 76 (403)
|.|+|-..+++.+.|.|.++.++.++-+....++| +.+++-.|.|++|.|+-+..+.-.||-+|.+|.++.+.
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~g---l~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQD---FNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTT---CCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhC---CChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 67899999999999999999999999999999999 88888899999999988999999999999999988643
No 185
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.54 E-value=0.00016 Score=62.04 Aligned_cols=69 Identities=25% Similarity=0.243 Sum_probs=56.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-------------------------------------Cc
Q 015622 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-------------------------------------QQ 44 (403)
Q Consensus 2 kI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~-------------------------------------~Q 44 (403)
.|+|+.++|...++.|+.+.||.+++..|+.+.| |... .+
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kig---I~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 89 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIG---ITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQ 89 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHT---CCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhC---CCCcccccccccccccccccCchhhccccccccchhHHHHHHH
Confidence 3899999999999999999999999999999999 6533 34
Q ss_pred EEEe--CCeecCCcCchhhcccCCCCEEEEE
Q 015622 45 MLIH--QGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 45 kLiy--~GKiL~D~~tL~d~gI~~~s~I~v~ 73 (403)
||-. .+.-|+++++|.++||.++++|.+-
T Consensus 90 kL~~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 90 KLHTDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp SCCCSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred HhcccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 4422 2356788999999999999986543
No 186
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.54 E-value=1.2e-05 Score=80.11 Aligned_cols=74 Identities=11% Similarity=0.150 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
++|+|++ +|+.+.+.|..++++..|++..+++.| ++++.+|++|.|+.|.++.|.+++++.+||+|.|+.....
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G---~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g 95 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (360)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhC---CCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCc
Confidence 3567776 677788899999999999999999999 9999999999999999999999999999999999986543
No 187
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.30 E-value=3.6e-05 Score=77.41 Aligned_cols=73 Identities=10% Similarity=0.132 Sum_probs=0.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEecCC
Q 015622 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 2 kI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k~k 78 (403)
.|+|+. +++.+.+.|..++++..||+..+++.| ++...++++|.|+.|.++.|.+++++.+|++|.+++....
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g---~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~g 104 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIG 104 (389)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccc
Confidence 466665 667778899999999999999999999 9999999999999999999999999999999999987654
No 188
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.28 E-value=0.00032 Score=50.81 Aligned_cols=42 Identities=29% Similarity=0.414 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhC-CHHHHHHHHHc-CCCC
Q 015622 172 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYS-GIPE 216 (403)
Q Consensus 172 ~e~~v~~i~eMG~~~f~reqv~~ALrAafn-NpdrAvEyL~~-GIP~ 216 (403)
.-++++.|++|| |+++-|++||+..-| ..+-|+|||.. +.|+
T Consensus 9 n~qmlq~L~eMG---Fd~erae~Alk~Tg~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 9 NRQMLQELVNAG---CDQEMAGRALKQTGSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHHTSCCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHhCcccHHHHHHHHHHhcCCC
Confidence 457899999999 999999999999877 79999999975 4553
No 189
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.19 E-value=0.003 Score=52.41 Aligned_cols=70 Identities=13% Similarity=0.209 Sum_probs=59.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEE--eCCeecC--C-cCchhhcccCCCCEEEEEE
Q 015622 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK--D-VTTLEENKVAENSFVVVML 74 (403)
Q Consensus 2 kI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLi--y~GKiL~--D-~~tL~d~gI~~~s~I~v~v 74 (403)
+|.||..+|+.+.-.+..++||.+|...|....+ .+.....|+ |-.|.|. | +++|.++|+....+|+|..
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVG---NTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHT---TSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccC---CCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 6899999999998899999999999999999877 555677776 6788886 4 6899999999877766654
No 190
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.18 E-value=0.0014 Score=51.67 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=57.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEE--eCCeecC---CcCchhhcccCCCCEEEEE
Q 015622 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK---DVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 2 kI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLi--y~GKiL~---D~~tL~d~gI~~~s~I~v~ 73 (403)
+|.||..+|+.+.-.+..++||.+|...|.. .+ ++....+|+ |-.|.|. .+++|.++|+.+..+|+|-
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KG---FPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TT---CCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cC---CCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 6889999999888889999999999999987 56 667788887 5678884 4689999999998888764
No 191
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.13 E-value=0.00043 Score=65.95 Aligned_cols=44 Identities=30% Similarity=0.404 Sum_probs=40.7
Q ss_pred ccCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015622 166 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (403)
Q Consensus 166 l~~g~~~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~ 212 (403)
-+.+++|++.|++|++|| |+|++|+.||+....|-++|+|||+.
T Consensus 209 ~~~~~~~~~~v~~l~~mg---f~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 209 PVSSPEYTKKIENLCAAG---FDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp SCCCHHHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ccCcchHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 345678999999999999 99999999999999999999999985
No 192
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=96.98 E-value=0.00084 Score=74.15 Aligned_cols=40 Identities=25% Similarity=0.543 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015622 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400 (403)
Q Consensus 361 ~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~~~l~~~~~d 400 (403)
+.|..|.+|||++.++++|+.+|++|.+.|++|||++..|
T Consensus 722 e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~ 761 (854)
T 3ihp_A 722 DCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDD 761 (854)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCccc
Confidence 4488899999999999999999999999999999997654
No 193
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=96.88 E-value=0.00017 Score=67.25 Aligned_cols=73 Identities=21% Similarity=0.346 Sum_probs=16.9
Q ss_pred CHHHHHHHHHcHHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHH
Q 015622 312 NPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 391 (403)
Q Consensus 312 nP~L~~lI~~n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~~~lt~ee~~ai~~l~~lgf~~~~~~~a~~~c~~ne~~a~ 391 (403)
|++.+++...|++.|.+...+-... .... .. ..+-.+.|++|++|||+++.++.|+..|+||++.|+
T Consensus 143 n~eaa~~~~~d~~~f~~~ar~~t~~--------ya~~--~~---~~~~~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~ 209 (216)
T 2pwq_A 143 DAEVAKMYKENHALFVKTASVWTKT--------FATG--PK---EEPREVIIKKITEMGFSEDQAKNALIKANWNETLAL 209 (216)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHHH--------HSCC--C----------------------------------------
T ss_pred cHHHHHHHHHCHHHHHHHHHHHHHH--------hcCC--Cc---ccchhhHHHHHHHcCCCHHHHHHHHHHcCCchHHHH
Confidence 6777888888888888775432110 0000 00 002246799999999999999999999999999999
Q ss_pred HHHhcc
Q 015622 392 NYLLDH 397 (403)
Q Consensus 392 ~~l~~~ 397 (403)
+.||+.
T Consensus 210 ~~l~~~ 215 (216)
T 2pwq_A 210 NTLLEN 215 (216)
T ss_dssp ------
T ss_pred HHHhcC
Confidence 999964
No 194
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.43 E-value=0.0071 Score=51.37 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=58.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEE--eCCeec--CC-cCchhhcccCCCCEEEEEE
Q 015622 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVL--KD-VTTLEENKVAENSFVVVML 74 (403)
Q Consensus 2 kI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLi--y~GKiL--~D-~~tL~d~gI~~~s~I~v~v 74 (403)
+|.||..+|+.+.-.+..++||.+|...|... + ++....+|+ |-.|.| .| +++|.++|+.....|+|..
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~---~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-G---YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-H---CCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 68899999998888999999999999999876 6 666778887 668988 34 7899999999888777653
No 195
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.33 E-value=0.0048 Score=45.82 Aligned_cols=40 Identities=28% Similarity=0.377 Sum_probs=34.9
Q ss_pred HHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015622 361 EAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDHMHE 400 (403)
Q Consensus 361 ~ai~~l~~l--gf~~~~~~~a~~~c~~ne~~a~~~l~~~~~d 400 (403)
+.|+.|.+| +++++.+..+|.+|++|.+.|++.||+-.++
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE 52 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCC
Confidence 448889999 5689999999999999999999999986544
No 196
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.11 E-value=0.036 Score=45.81 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=56.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEE--eCCeecC-C-cCchhhcccCCCCEEEEEE
Q 015622 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK-D-VTTLEENKVAENSFVVVML 74 (403)
Q Consensus 2 kI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLi--y~GKiL~-D-~~tL~d~gI~~~s~I~v~v 74 (403)
+|.||..+|+.+.-.+..++||.+|...|... + +.....+|+ |-.|.|. | +++|.++||....+|+|-.
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~---~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-G---YHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-T---CCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 68899999998888899999999999999865 4 455677886 6688886 3 6899999999887776643
No 197
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=95.95 E-value=0.0052 Score=57.06 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=48.2
Q ss_pred hCHHHHHHHHHcHHHHHHHhcCCCCCC-CCcccccccccCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHH
Q 015622 311 QNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 388 (403)
Q Consensus 311 ~nP~L~~lI~~n~e~Fl~~l~~~~~~~-~g~~~~~~~~~~~~~~~lt~ee~~ai~~l~~lgf~~~~~~~a~~~c~~ne~ 388 (403)
.|++..++...|++.|.+...+-...- .....+..+.. ....+-..+.+.|++|++|||+++.|++||..|++|+.
T Consensus 122 ln~eaa~~~~~d~~~f~~~ar~~t~~yA~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~mg~~~~~~~~al~~~~~~~~ 198 (215)
T 1tte_A 122 QDAEVAQHYLRDRESFNKTAALWTRLYASETSNGQKGNV--EESDLYGIDHDLIDEFESQGFEKDKIVEVLRRLGVKSL 198 (215)
T ss_dssp SCHHHHHHHHHCHHHHHHHHHHHHHHSSCCCSCCSSCCC--SCSSCCCCSHHHHHHHHHHTCCHHHHHHHHHHSCCSSC
T ss_pred cCHHHHHHHHHCHHHHHHHHHHHHHHhccCCCcccccch--hhhhhccccHHHHHHHHHcCCCHHHHHHHHHHcCCCcc
Confidence 467777788888888877643211000 00000000000 12334556678899999999999999999999999984
No 198
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.90 E-value=0.025 Score=48.16 Aligned_cols=65 Identities=18% Similarity=0.292 Sum_probs=53.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEE--eCCeecCC-cCchhhcccCCCC
Q 015622 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKD-VTTLEENKVAENS 68 (403)
Q Consensus 2 kI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLi--y~GKiL~D-~~tL~d~gI~~~s 68 (403)
+|.||..+|+.+.-.+..++||.+|...|...... +......|+ |-.|.|.| +++|.++|+.+..
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~--~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psa 121 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPA--MAATSFVLMTTFPNKELADENQTLKEANLLNAV 121 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSG--GGTSCEEEEETTTTEECCSTTCBHHHHTCSSCE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcC--CCCCCeEEecCCCCCCCCCCCCcHHHCCCcCce
Confidence 58999999999988999999999999999886421 445667776 66899976 6899999999743
No 199
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.66 E-value=0.025 Score=42.94 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=42.1
Q ss_pred ccCCHHHHHHHHHHHHc-C-CChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015622 353 VTVTPEEREAIERLEAM-G-FDRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 353 ~~lt~ee~~ai~~l~~l-g-f~~~~~~~a~~~c~~ne~~a~~~l~~~~ 398 (403)
..||.+..+.|.+++++ | -+...|++.+.+|+||-+.|++..|++.
T Consensus 12 ~~Ls~~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~ 59 (67)
T 2dam_A 12 RDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQ 59 (67)
T ss_dssp CCCCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSS
T ss_pred hhcChhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 47899999999999997 8 6899999999999999999999999863
No 200
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.50 E-value=0.027 Score=41.98 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=42.4
Q ss_pred cccCCHHHHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015622 352 AVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 352 ~~~lt~ee~~ai~~l~~l-gf~~~~~~~a~~~c~~ne~~a~~~l~~~~ 398 (403)
...++....+.|++++++ |-++..+++-+.+|+||.+.|++..|++.
T Consensus 8 ~~~~s~~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~ 55 (62)
T 2dal_A 8 GSAASSALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGG 55 (62)
T ss_dssp CCSSCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSC
T ss_pred hhhcCccHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 457788888899999997 89999999999999999999999999864
No 201
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.47 E-value=0.013 Score=43.39 Aligned_cols=41 Identities=27% Similarity=0.288 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015622 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (403)
Q Consensus 172 ~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~G 213 (403)
.|+.|..|.+|= +.++++.|+..|++.-+|.|+||+.|+.-
T Consensus 9 ~ee~l~~L~emF-P~ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 9 SEEDLKAIQDMF-PNMDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp CHHHHHHHHHHC-SSSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHC-CCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 588999999992 33999999999999999999999999975
No 202
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.32 E-value=0.014 Score=42.23 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHhccC
Q 015622 358 EEREAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHM 398 (403)
Q Consensus 358 ee~~ai~~l~~lgf~~~~~~~a~~~c~~-ne~~a~~~l~~~~ 398 (403)
+-+.-++.|++|||+++.|..|+-..+. ..+.|..||+.-.
T Consensus 8 vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 8 VNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp CCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHhc
Confidence 3345599999999999999999988764 8999999998543
No 203
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=95.14 E-value=0.0035 Score=58.25 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCC
Q 015622 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 214 (403)
Q Consensus 171 ~~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~GI 214 (403)
.+++.|+++++|| |+|++++.||+..-.|-++|+|.|+.|+
T Consensus 176 ~~~~~v~~~~~mg---f~~~~~~~al~~~~~~~~~~~~~l~~~~ 216 (216)
T 2pwq_A 176 PREVIIKKITEMG---FSEDQAKNALIKANWNETLALNTLLENS 216 (216)
T ss_dssp --------------------------------------------
T ss_pred chhhHHHHHHHcC---CCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 4578999999999 9999999999999999999999999874
No 204
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=95.04 E-value=0.036 Score=38.32 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=35.9
Q ss_pred HHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015622 359 EREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 359 e~~ai~~l~~l-gf~~~~~~~a~~~c~~ne~~a~~~l~~~~ 398 (403)
..+.|++.+++ |.++..+++-+.+|+||-+.|++..|+++
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 45679999987 89999999999999999999999999864
No 205
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.98 E-value=0.084 Score=41.85 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=58.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEe---CCeecCCcCchhhcccCCCCEEEEEEecC
Q 015622 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH---QGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 2 kI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy---~GKiL~D~~tL~d~gI~~~s~I~v~v~k~ 77 (403)
++.|.....+++.+.|++..++.+|--.|.++.. +.++.-.|.. .+..|+-+++|.||||++ ++.+-.++
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kce---fdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~~~ 84 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCE---FDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDVNR 84 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTT---CCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEECCC
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhccc---CChhhEEEecCCCCCcccchhcchhhhhhhh---hheecccc
Confidence 5667767778888999999999999999999987 7788877763 456788899999999998 77666554
No 206
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=94.70 E-value=0.09 Score=40.46 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=47.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEE
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~ 73 (403)
|+|+||....+...+++....||.+|-++ .| ++++...+..+|+++..+. +.+||.|.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lg---l~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VD---LSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TC---CCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cC---CCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 89999977545566899999999998755 67 8888887788999986665 2358888776
No 207
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.51 E-value=0.065 Score=40.67 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=39.3
Q ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015622 168 AGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (403)
Q Consensus 168 ~g~~~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~ 212 (403)
.+.++++.|+.|.+|= +.++++.|+..|++.-+|.|+||+-|+.
T Consensus 14 ~~~~~~~~v~~L~~MF-P~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 14 RRLEFNQAMDDFKTMF-PNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp CCCCSHHHHHHHHHHC-SSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHC-CCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4567899999999992 4489999999999999999999999986
No 208
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=94.48 E-value=0.044 Score=39.07 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015622 172 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (403)
Q Consensus 172 ~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~G 213 (403)
-+..|+.|.||= +.-++++|+++|+++.+|-|||+..|+++
T Consensus 4 ~e~~v~~L~EMF-P~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 4 HESKLSILMDMF-PAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHHC-SSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHC-CCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 468899999993 22799999999999999999999999986
No 209
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.20 E-value=0.24 Score=41.16 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=45.1
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC------CCcEEEe----CCeecCCc-------------CchhhcccCC
Q 015622 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH----QGKVLKDV-------------TTLEENKVAE 66 (403)
Q Consensus 10 gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~------~~QkLiy----~GKiL~D~-------------~tL~d~gI~~ 66 (403)
+..+.+.|-..+||.++|+||-...-+. +|. +.+.|-| .|++|.|. .||..|+|.+
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~-~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRG-QPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcC-CccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 3457788889999999999998775332 443 3455655 35677662 3689999999
Q ss_pred CCEEEEEE
Q 015622 67 NSFVVVML 74 (403)
Q Consensus 67 ~s~I~v~v 74 (403)
|.+|.++-
T Consensus 102 gatl~l~~ 109 (111)
T 4e71_A 102 GATLILSK 109 (111)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 99998764
No 210
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.09 E-value=0.07 Score=40.50 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=33.3
Q ss_pred HHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015622 360 REAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 360 ~~ai~~l~~l--gf~~~~~~~a~~~c~~ne~~a~~~l~~~ 397 (403)
.++|++|.+| .++++.+..+|.+|++|.+.|++.|++-
T Consensus 19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4569999999 3479999999999999999999999963
No 211
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=94.01 E-value=0.37 Score=47.42 Aligned_cols=93 Identities=16% Similarity=0.296 Sum_probs=53.0
Q ss_pred HHHHHHHhCccchHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHH-HHHH-
Q 015622 289 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREA-IERL- 366 (403)
Q Consensus 289 ~lR~~vq~NP~lL~~~Lqqi~~~nP~L~~lI~~n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~~~lt~ee~~a-i~~l- 366 (403)
.+..+|..+|.+|.-=+.. |..+= +|++-|+..... ....-...|..+.++.+.... +.-|
T Consensus 94 ~V~kiL~k~P~lL~~s~e~-----------L~~~l-~fL~~lGl~~~~-----i~~ll~~~P~lL~~s~e~i~~~v~~L~ 156 (335)
T 4fp9_B 94 PVCVVLKKSPQLLKLPIMQ-----------MRKRS-SYLQKLGLGEGK-----LKRVLYCCPEIFTMRQQDINDTVRLLK 156 (335)
T ss_dssp HHHHHHHHCGGGGGSCHHH-----------HHHHH-HHHHHTTCTTTT-----HHHHHHHCGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhChhhccCCHHH-----------HHHHH-HHHHHcCCCHHH-----HHHHHHhCchhhccChHHHHHHHHHHH
Confidence 4678888889888622222 33332 456655443211 111111123467788887655 4555
Q ss_pred HHcCCChHHHHHHHHHhC-------CCHHHHHHHHhccC
Q 015622 367 EAMGFDRALVLEVFFACN-------KNEELAANYLLDHM 398 (403)
Q Consensus 367 ~~lgf~~~~~~~a~~~c~-------~ne~~a~~~l~~~~ 398 (403)
..+||+++++..++..|= .+-.--.+||...+
T Consensus 157 ~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~M 195 (335)
T 4fp9_B 157 EKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRM 195 (335)
T ss_dssp HTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTT
T ss_pred HHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHh
Confidence 478999999999998883 23344455565443
No 212
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=93.99 E-value=0.15 Score=39.13 Aligned_cols=52 Identities=13% Similarity=0.292 Sum_probs=43.6
Q ss_pred cCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC-CCCCCC
Q 015622 167 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTA 219 (403)
Q Consensus 167 ~~g~~~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~G-IP~~~~ 219 (403)
+.+.+.+..|..|.++= +-|....|.++|..-.+|+|+.|.+|+.| +|.++.
T Consensus 8 ~~~~~l~s~I~qV~DLf-PdLG~gfi~~~L~~y~~nvE~vin~LLE~~LPp~L~ 60 (71)
T 2di0_A 8 MCGVELDSLISQVKDLL-PDLGEGFILACLEYYHYDPEQVINNILEERLAPTLS 60 (71)
T ss_dssp CSSHHHHHHHHHHHHHC-CSSCHHHHHHHHHHTTTCHHHHHHHHHTTCCCTTTT
T ss_pred CcHHHHHHHHHHHHHHc-ccCCHHHHHHHHHHhCCCHHHHHHHHHccCCCHHHH
Confidence 46778999999999972 22779999999999778999999999998 777653
No 213
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=93.99 E-value=0.039 Score=60.85 Aligned_cols=41 Identities=39% Similarity=0.670 Sum_probs=37.6
Q ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015622 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (403)
Q Consensus 170 ~~~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~G 213 (403)
...++.|..|++|| |++++.++||++..||.+|||+||.+.
T Consensus 718 ~~~~e~i~~l~~mG---f~~~~a~~aL~~t~~~~eraidwlfs~ 758 (854)
T 3ihp_A 718 PPPEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSH 758 (854)
T ss_dssp -CCHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcC---CCHHHHHHHHHhhcCcHHHHHHhhhcC
Confidence 34578999999999 999999999999999999999999985
No 214
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=93.48 E-value=0.4 Score=36.08 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=44.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEE
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v 74 (403)
|+|+|.-.. ....+++....||.+|.+.+ + ++.....+..+|+++..+. -|++||.|.++-
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~---~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----E---IPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----T---CCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----C---CCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 566666322 23556777788999999876 5 5566677889999987665 588999998873
No 215
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=93.27 E-value=0.092 Score=37.39 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=34.8
Q ss_pred HHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015622 360 REAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 360 ~~ai~~l~~l--gf~~~~~~~a~~~c~~ne~~a~~~l~~~~ 398 (403)
.+.|+.|.+| ..++..+..+|.+|++|.+.|++.|++..
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~ 45 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEN 45 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 3569999999 57899999999999999999999999753
No 216
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=93.21 E-value=0.29 Score=42.15 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=46.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC------CcEEEe----CCe-ecCCc-------------CchhhcccCC
Q 015622 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPAS------QQMLIH----QGK-VLKDV-------------TTLEENKVAE 66 (403)
Q Consensus 11 k~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~------~QkLiy----~GK-iL~D~-------------~tL~d~gI~~ 66 (403)
..+.+.|-..+||.++|+||-...-++ +|.+ +.-|-+ .|+ +|.|. .||..|+|.+
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~-~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcC-CccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 357788889999999999999887543 5432 334444 344 46653 2899999999
Q ss_pred CCEEEEEEec
Q 015622 67 NSFVVVMLTK 76 (403)
Q Consensus 67 ~s~I~v~v~k 76 (403)
|.+|.++-+.
T Consensus 120 ga~l~l~~~~ 129 (138)
T 2r2o_A 120 GATVALVPCL 129 (138)
T ss_dssp TCEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 9999887554
No 217
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=93.06 E-value=0.15 Score=38.35 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=33.2
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015622 174 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (403)
Q Consensus 174 ~~v~~i~eM-G~~~f~reqv~~ALrAafnNpdrAvEyL~~ 212 (403)
+.|..|.++ | ....+|..||..+.+|.+.|++||..
T Consensus 11 ~~Vk~LRe~TG---ag~~dcKkAL~e~~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 11 ELLMKLRRKTG---YSFVNCKKALETCGGDLKQAEIWLHK 47 (64)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 579999997 8 99999999999999999999999963
No 218
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=92.77 E-value=0.16 Score=38.23 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015622 354 TVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 354 ~lt~ee~~ai~~l~~l-gf~~~~~~~a~~~c~~ne~~a~~~l~~~ 397 (403)
.+|.+. |+.|.+. |.+..+|.+||..||+|.+.|+.||-++
T Consensus 7 ~it~~~---Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 7 GSSKEL---LMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp CCCCHH---HHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCHHH---HHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345444 8888886 9999999999999999999999999653
No 219
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=92.75 E-value=0.24 Score=45.62 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=50.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CcEEE--e-CC--eecCC-cCchhhcccCCCCEEEEEEec
Q 015622 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLI--H-QG--KVLKD-VTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~-~QkLi--y-~G--KiL~D-~~tL~d~gI~~~s~I~v~v~k 76 (403)
+++.++..+||.+|++++...++ ++.+ ..||- | .+ ..|.| +++|.+++|.++..|+|=++.
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFS---IPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTT---CCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred eEEEEcccchHHHHHHHHHHHhC---CCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 56788999999999999999999 8886 68873 3 22 34666 579999999999999887764
No 220
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=92.61 E-value=0.55 Score=43.59 Aligned_cols=61 Identities=13% Similarity=0.249 Sum_probs=50.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CcEEEe-C----CeecCC-cCchhhcccCCCCEEEEEEec
Q 015622 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIH-Q----GKVLKD-VTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~-~QkLiy-~----GKiL~D-~~tL~d~gI~~~s~I~v~v~k 76 (403)
+++.++..+||.+|++++...++ ++.+ ..||-. . ...|.| +.+|.+++|.++..|.|=++.
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFN---IPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTT---CCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred EEEEecccCcHHHHHHHHHHHhC---CCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 55678999999999999999999 8887 688842 2 245766 589999999999999887764
No 221
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=92.05 E-value=0.85 Score=36.38 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=47.2
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCCHHHHHHHHHHHhCC--CCC------CCCCcEEEeCCeecCCcCchhhcccC
Q 015622 1 MKVFVKTLK------G-THFEIEVKPEDKVSDVKKNIETVQGS--DVY------PASQQMLIHQGKVLKDVTTLEENKVA 65 (403)
Q Consensus 1 MkI~VKtl~------g-k~~~ieV~~~~TV~~LK~kI~~~~g~--~~i------p~~~QkLiy~GKiL~D~~tL~d~gI~ 65 (403)
|+|+||.+. | ....+++....||.+|.+.+...... ..+ ......+..+|+.... +.-|+
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 678888663 3 45678887788999999999877421 000 0134566778887753 55688
Q ss_pred CCCEEEEE
Q 015622 66 ENSFVVVM 73 (403)
Q Consensus 66 ~~s~I~v~ 73 (403)
+||.|.++
T Consensus 85 dGDeV~i~ 92 (98)
T 1vjk_A 85 DGDVVGVF 92 (98)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99998876
No 222
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=90.86 E-value=0.66 Score=35.07 Aligned_cols=65 Identities=6% Similarity=0.184 Sum_probs=44.4
Q ss_pred CEEEEEeCCCcE-EEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CCcEEEeCCeecCCcCchhhcccCCCCEEEEE
Q 015622 1 MKVFVKTLKGTH-FEIEVKPEDKVSDVKKNIETVQGSDVYPA--SQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 1 MkI~VKtl~gk~-~~ieV~~~~TV~~LK~kI~~~~g~~~ip~--~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~ 73 (403)
|+|+||.+..-. ..+++ ...||.+|++.+....+ +.. ....+..+|+.+.+ .+.-|++||.|.++
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~---l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEG---LKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLL 68 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTT---TTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcC---HHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEE
Confidence 889999775421 34666 56799999999986533 221 34566678887543 24458899999887
No 223
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=89.59 E-value=1.5 Score=37.12 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=46.5
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC------CCcEEEe----CCe-ecCCc-------------CchhhcccC
Q 015622 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH----QGK-VLKDV-------------TTLEENKVA 65 (403)
Q Consensus 10 gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~------~~QkLiy----~GK-iL~D~-------------~tL~d~gI~ 65 (403)
+..+.+.|-..+||.++|+||-...-+. +|. +++.|-| .|+ +|.|. .||..|+|.
T Consensus 16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 16 MDSLSVRAMDTDTLTQVKEKILEAFCKN-VPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHSTT-SCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCceeeeeeccCchhhhhHHHHHHHhcc-CCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 4457788888999999999998776432 443 4556655 234 36552 368999999
Q ss_pred CCCEEEEEEe
Q 015622 66 ENSFVVVMLT 75 (403)
Q Consensus 66 ~~s~I~v~v~ 75 (403)
+|.+|.+..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999988754
No 224
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.44 E-value=0.62 Score=35.02 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhccCC
Q 015622 358 EEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHMH 399 (403)
Q Consensus 358 ee~~ai~~l~~l-gf~~~~~~~a~~~c~~ne~~a~~~l~~~~~ 399 (403)
.+.+.|.+.+.+ |-++..+++.+.+|+||-+.|++.+|++..
T Consensus 16 ~~q~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 16 RHQVMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred ccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 333579999987 899999999999999999999999997643
No 225
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=89.36 E-value=0.99 Score=44.38 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=54.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCC-CCCCCCcEEEe------CCeecCCcCchhhcccCCCCEEEEEE
Q 015622 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD-VYPASQQMLIH------QGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 2 kI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~-~ip~~~QkLiy------~GKiL~D~~tL~d~gI~~~s~I~v~v 74 (403)
.|.|... +.+-++.++++.||.++..+|.++.... ..+.++--|.. +|+=|++.++|..|++++++.|....
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 3455543 6677899999999999999998887520 12345556655 45668889999999999999887664
No 226
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=89.32 E-value=1 Score=37.73 Aligned_cols=64 Identities=25% Similarity=0.365 Sum_probs=44.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC------CcEEEe-CC---e-ecCCc-------------CchhhcccCCC
Q 015622 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPAS------QQMLIH-QG---K-VLKDV-------------TTLEENKVAEN 67 (403)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~------~QkLiy-~G---K-iL~D~-------------~tL~d~gI~~~ 67 (403)
.+.+.|-..+||.++|+||-...-+. .|.+ .+.|-| .| + +|.|. .||..|+|.+|
T Consensus 28 ~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 28 EVPVKILNCDTITQVKEKILDAIFKN-VPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred ceEeeeecCCchHHHHHHHHHHHhcC-CCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 47778888999999999998775332 4433 445544 22 3 35541 36899999999
Q ss_pred CEEEEEEec
Q 015622 68 SFVVVMLTK 76 (403)
Q Consensus 68 s~I~v~v~k 76 (403)
.+|.++-+.
T Consensus 107 atl~l~~~~ 115 (117)
T 4e74_A 107 SVVALVSKQ 115 (117)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEeCC
Confidence 999887543
No 227
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=89.21 E-value=0.18 Score=38.72 Aligned_cols=41 Identities=22% Similarity=0.428 Sum_probs=30.3
Q ss_pred chHHhhccHHHH--HHHHHHHhCccchHHHHHHHHhhCH-HHHHHHHHc
Q 015622 277 TLDFLRNSQQFQ--ALRTMVQANPQILQPMLQELGKQNP-HLMRLIQEH 322 (403)
Q Consensus 277 ~l~~Lr~~pqf~--~lR~~vq~NP~lL~~~Lqqi~~~nP-~L~~lI~~n 322 (403)
-.+.+++||+.. -|.++-++||++++ +.++|| +|+++|++-
T Consensus 18 lR~~vqqNP~lL~~lLqqL~~~NPqL~q-----~I~~n~e~Fl~ll~e~ 61 (72)
T 1pve_A 18 MRQIIQQNPSLLPALLQQIGRENPQLLQ-----QISQHQEHFIQMLNEP 61 (72)
T ss_dssp HHHHHTTCGGGHHHHHHHHHTTCHHHHH-----HHHTTHHHHHHHHHSC
T ss_pred HHHHHHHCHHHHHHHHHHHHhHCHHHHH-----HHHHCHHHHHHHHcCC
Confidence 356788889864 56788899999876 556775 588888653
No 228
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=88.85 E-value=1.6 Score=40.84 Aligned_cols=41 Identities=20% Similarity=0.393 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH-------hh-CCHHHHHHHHHc-CCCC
Q 015622 173 EATVQQILDMGGGSWDRETVIRALRA-------AY-NNPERAVEYLYS-GIPE 216 (403)
Q Consensus 173 e~~v~~i~eMG~~~f~reqv~~ALrA-------af-nNpdrAvEyL~~-GIP~ 216 (403)
..+|+.|.+|| ++..++++..+. .. .|...-++||.. |++.
T Consensus 6 s~~l~~L~~lG---v~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~ 55 (270)
T 3m66_A 6 SETLQKLVLLG---VDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIED 55 (270)
T ss_dssp HHHHHHHHHTT---CCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCG
T ss_pred hHHHHHHHHcC---CCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCH
Confidence 46899999999 999999877555 22 255667899977 7764
No 229
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=87.89 E-value=0.96 Score=31.95 Aligned_cols=39 Identities=31% Similarity=0.453 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHH--cCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015622 357 PEEREAIERLEA--MGFDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 357 ~ee~~ai~~l~~--lgf~~~~~~~a~~~c~~ne~~a~~~l~~~ 397 (403)
|||. |++... -|-+|+..|+-+...+-|.++|+|-|++.
T Consensus 9 Pe~l--i~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T 2qho_B 9 PEEL--ISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp CHHH--HHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred cHHH--HHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence 4444 444433 49999999999999999999999999987
No 230
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=87.47 E-value=0.91 Score=35.85 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=41.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEE-eCCe----ecCCcCchhhcccCCCCEEEEE
Q 015622 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-HQGK----VLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 2 kI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLi-y~GK----iL~D~~tL~d~gI~~~s~I~v~ 73 (403)
||.|- .++-.|.|.|..+.+..+||.||..+.. + +...|+ |++. .|.++..|.. -|..+..|.|.
T Consensus 14 KVK~y-y~DDIiAIrvP~di~~~~L~dKi~~RLk---~--~~~~l~~ykde~~g~~i~sD~dl~~-aiqrn~KL~l~ 83 (85)
T 1ip9_A 14 KIKFY-YKDDIFALMLKGDTTYKELRSKIAPRID---T--DNFKLQTKLFDGSGEEIKTDSQVSN-IIQAKLKISVH 83 (85)
T ss_dssp EEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHT---S--SCEEEEECCSSSCCSCCCSHHHHHH-HHHTTCCEEEE
T ss_pred EEEEE-ecCcEEEEECCCCCCHHHHHHHHHHHhc---c--cceEEEEecCCCCCCcccCHHHHHH-HHHhcCeeEEe
Confidence 44444 3456899999999999999999999987 4 455554 4433 3333333332 24555555543
No 231
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=87.25 E-value=0.28 Score=36.52 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=27.2
Q ss_pred hHHhhccHHHH--HHHHHHHhCccchHHHHHHHHhhCHH-HHHHHHH
Q 015622 278 LDFLRNSQQFQ--ALRTMVQANPQILQPMLQELGKQNPH-LMRLIQE 321 (403)
Q Consensus 278 l~~Lr~~pqf~--~lR~~vq~NP~lL~~~Lqqi~~~nP~-L~~lI~~ 321 (403)
.+.+++||+.. -|.++-++||++++ +.++||+ |+++|++
T Consensus 17 R~~vq~NP~~L~~lLqql~~~nP~l~~-----~I~~n~e~Fl~ll~e 58 (61)
T 2f4m_B 17 RQIIQQNPSLLPALLQQIGRENPQLLQ-----QISQHQEHFIQMLNE 58 (61)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHCHHHHH-----HHHHSHHHHHHHHTS
T ss_pred HHHHHHCHHHHHHHHHHHHhHCHHHHH-----HHHHCHHHHHHHHcc
Confidence 35566778754 56778889999776 5557754 7777743
No 232
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=87.18 E-value=4.9 Score=30.97 Aligned_cols=56 Identities=9% Similarity=0.153 Sum_probs=40.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------CCCcEEEeCCeecCCcCchhhcccCCCCEEEEE
Q 015622 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYP----------ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 11 k~~~ieV~~~~TV~~LK~kI~~~~g~~~ip----------~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~ 73 (403)
+...+++....||.+|++.+...+.. +. .....+..+|+.... +.-|++||.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~--~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPA--LESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGG--GHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcH--HHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEE
Confidence 56788888788999999999887531 10 012566778888765 4458889999887
No 233
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=86.49 E-value=1.3 Score=34.74 Aligned_cols=45 Identities=9% Similarity=0.265 Sum_probs=37.5
Q ss_pred ccCCHHHHHH----HHHHHH-cC--CChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015622 353 VTVTPEEREA----IERLEA-MG--FDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 353 ~~lt~ee~~a----i~~l~~-lg--f~~~~~~~a~~~c~~ne~~a~~~l~~~ 397 (403)
-+|++.|++. ++.+.+ +| .++...++|.++|+-|.+.|.|++|+.
T Consensus 24 ~~Ls~~d~arL~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 24 HQLSEIDQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 3588888876 455555 47 899999999999999999999999964
No 234
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=86.36 E-value=1.3 Score=33.89 Aligned_cols=44 Identities=14% Similarity=0.244 Sum_probs=36.5
Q ss_pred CCHHHHH-HHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015622 355 VTPEERE-AIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 355 lt~ee~~-ai~~l~~l--gf~~~~~~~a~~~c~~ne~~a~~~l~~~~ 398 (403)
++..+++ .|.++.+| -+....+.+.+..+|.|.|.++|.|||+.
T Consensus 8 ~~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~ 54 (71)
T 2di0_A 8 MCGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER 54 (71)
T ss_dssp CSSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccC
Confidence 3444444 48999998 57899999999999999999999999864
No 235
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=85.97 E-value=0.33 Score=35.22 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhc
Q 015622 358 EEREAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLD 396 (403)
Q Consensus 358 ee~~ai~~l~~l--gf~~~~~~~a~~~c~~ne~~a~~~l~~ 396 (403)
|-.++|+.|.+| .+|++.+.-+++++++|.+.|++.||+
T Consensus 11 e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 445679999999 689999999999999999999999986
No 236
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=85.57 E-value=0.6 Score=32.56 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=30.7
Q ss_pred HHHHHHHHHc-CCCh-HHHHHHHHHhCCCHHHHHHHHh
Q 015622 360 REAIERLEAM-GFDR-ALVLEVFFACNKNEELAANYLL 395 (403)
Q Consensus 360 ~~ai~~l~~l-gf~~-~~~~~a~~~c~~ne~~a~~~l~ 395 (403)
.+.|.+++++ |.+. +++++-+.+|+||-+.|++-.|
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 3569999998 9986 9999999999999999987543
No 237
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=85.25 E-value=1.3 Score=34.76 Aligned_cols=45 Identities=11% Similarity=0.049 Sum_probs=37.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG 50 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~G 50 (403)
|+|+|.. .-++.|.|.+..+..+|+.+|.++.+ ++.+..+|.|+-
T Consensus 6 ~~VKV~~--~~tvairvp~~~~y~~L~~~l~~kL~---l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHY--KYTVVMKTQPGLPYSQVRDMVSKKLE---LRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEES--SSEEEEEECTTCCHHHHHHHHHHHTT---CCGGGCCEEECC
T ss_pred EEEEEEE--EEEEEEECCCCCCHHHHHHHHHHHhC---CCcceeEEEeeC
Confidence 3455553 36889999999999999999999999 888889999964
No 238
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=85.18 E-value=1.1 Score=37.09 Aligned_cols=69 Identities=10% Similarity=0.055 Sum_probs=43.0
Q ss_pred CEEEEEeCC------C--cEEEEEeCC---CCCHHHHHHHHHHHhCCCCCCCCCcEEEeC-Ce------ecCCcCch---
Q 015622 1 MKVFVKTLK------G--THFEIEVKP---EDKVSDVKKNIETVQGSDVYPASQQMLIHQ-GK------VLKDVTTL--- 59 (403)
Q Consensus 1 MkI~VKtl~------g--k~~~ieV~~---~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~-GK------iL~D~~tL--- 59 (403)
|+|+|+... | +.++|++.. ..||.+|...|.+.+. ..+.+|+.. |+ +|-++..+
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~-----~~~~~lf~~~g~lr~~i~VlVN~~di~~l 86 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLL-----KERPELFIQGDSVRPGILVLINDADWELL 86 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTC-----CSCHHHHCCSSSCCSSEEEEESSSBHHHH
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHcc-----chhHhhCccCCcccCCeEEEECCeeeecc
Confidence 678888553 3 356788873 3699999999987753 233344322 32 23333322
Q ss_pred --hhcccCCCCEEEEEE
Q 015622 60 --EENKVAENSFVVVML 74 (403)
Q Consensus 60 --~d~gI~~~s~I~v~v 74 (403)
.++-+++||.|.++-
T Consensus 87 ~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 87 GELDYQLQDQDSILFIS 103 (114)
T ss_dssp CTTTCBCCSSEEEEEEE
T ss_pred CCcCcCCCCCCEEEEeC
Confidence 346799999988764
No 239
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=85.18 E-value=2.4 Score=33.42 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=51.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEec
Q 015622 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~k 76 (403)
+...++-..++..||+.++.+.| +..+.-.+...+..|+++++|.+-+|+-...|.+.+--
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~---i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQ---CSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHC---SCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhc---CCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 34456667889999999999999 88888888888888999999999999988888877653
No 240
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=85.16 E-value=1.4 Score=34.89 Aligned_cols=57 Identities=9% Similarity=0.239 Sum_probs=41.0
Q ss_pred CCCcEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEE
Q 015622 8 LKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 8 l~gk~~~ieV~~~-~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v 74 (403)
++|+. +++... .||.+|.+.+ + ++.....+..+|+++..+ ...+.-|++||.|.++-
T Consensus 25 vNGe~--~el~~~~~Tv~dLL~~L----~---~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 25 LNGKD--VKWKKDTGTIQDLLASY----Q---LENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp ETTEE--ECCSSSCCBHHHHHHHT----T---CTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred ECCEE--EECCCCCCcHHHHHHHh----C---CCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 35654 455665 8999998875 5 566677788999988543 34556689999998874
No 241
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=84.82 E-value=1.3 Score=43.11 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHH----HHhhCCHHHHHHHHHc-CCC
Q 015622 172 LEATVQQILDMGGGSWDRETVIRAL----RAAYNNPERAVEYLYS-GIP 215 (403)
Q Consensus 172 ~e~~v~~i~eMG~~~f~reqv~~AL----rAafnNpdrAvEyL~~-GIP 215 (403)
.+.+|..|.++| +++++++++- ..+-.|||.-++||.. |+.
T Consensus 19 ~~~~v~~L~s~G---l~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s 64 (343)
T 3mva_O 19 NEDLLKNLLTMG---VDIDMARKRQPGVFHRMITNEQDLKMFLLSKGAS 64 (343)
T ss_dssp -CCHHHHHHHHT---CCHHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHcC---CCHHHHHHhCchhhccCcccHHHHHHHHHHcCCC
Confidence 456899999999 9999886652 1233588988899865 543
No 242
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=82.98 E-value=0.93 Score=39.87 Aligned_cols=38 Identities=24% Similarity=0.222 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHH
Q 015622 171 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 210 (403)
Q Consensus 171 ~~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL 210 (403)
.+...|.+|++.| -|+|++|+.||+++-.|.++|+--|
T Consensus 101 ~R~~K~~eL~s~G--~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 101 TRRRKVQELQSLG--FGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHHHHHTT--CCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CchHHHHHHHHHHcCCcHHHHHHHH
Confidence 3556777888888 3499999999999999999999766
No 243
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=82.39 E-value=1.3 Score=31.75 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCChHHH--HHHHHHhCCCHHHHHHHHh
Q 015622 359 EREAIERLEAMGFDRALV--LEVFFACNKNEELAANYLL 395 (403)
Q Consensus 359 e~~ai~~l~~lgf~~~~~--~~a~~~c~~ne~~a~~~l~ 395 (403)
=.++|.++..|||+.+-- .+.+.+++.|...|.+.|=
T Consensus 10 l~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 10 LIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhh
Confidence 357899999999976655 5999999999999998763
No 244
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=81.93 E-value=1.6 Score=38.38 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHH
Q 015622 358 EEREAIERLEAMGF-DRALVLEVFFACNKNEELAANYL 394 (403)
Q Consensus 358 ee~~ai~~l~~lgf-~~~~~~~a~~~c~~ne~~a~~~l 394 (403)
+-+..++.|..+|| +++++++|+...++|++.|...|
T Consensus 101 ~R~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 101 TRRRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHH
Confidence 44566999999995 99999999999999999998876
No 245
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=81.18 E-value=4.4 Score=31.58 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=43.5
Q ss_pred CEEEEEeCC------CcEEEEEeCCCCCHHHHHHHHHHHhCC--CCC-C-------CCCcEEEeCCeecCCcCchhhccc
Q 015622 1 MKVFVKTLK------GTHFEIEVKPEDKVSDVKKNIETVQGS--DVY-P-------ASQQMLIHQGKVLKDVTTLEENKV 64 (403)
Q Consensus 1 MkI~VKtl~------gk~~~ieV~~~~TV~~LK~kI~~~~g~--~~i-p-------~~~QkLiy~GKiL~D~~tL~d~gI 64 (403)
|+|+||.+. |+...++++ ..||.+|++.+..++.. ..+ . .....+..+|+...+..-+ +.-|
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~~-~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSAS-GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEEC-CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEecC-CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCC
Confidence 788888542 333346654 57999999999887531 000 0 0124556678776542222 4568
Q ss_pred CCCCEEEEEE
Q 015622 65 AENSFVVVML 74 (403)
Q Consensus 65 ~~~s~I~v~v 74 (403)
++||.|.++-
T Consensus 79 ~~gDeV~i~P 88 (93)
T 3dwg_C 79 ADGDSVTILP 88 (93)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCEEEEEC
Confidence 9999998873
No 246
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=81.05 E-value=0.58 Score=38.68 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=42.9
Q ss_pred CEEEEEeCC------CcEEEEEeCC----CCCHHHHHHHHHHHhCCCCCCCCCcEEE-eCC--e------ecCCcCch--
Q 015622 1 MKVFVKTLK------GTHFEIEVKP----EDKVSDVKKNIETVQGSDVYPASQQMLI-HQG--K------VLKDVTTL-- 59 (403)
Q Consensus 1 MkI~VKtl~------gk~~~ieV~~----~~TV~~LK~kI~~~~g~~~ip~~~QkLi-y~G--K------iL~D~~tL-- 59 (403)
|+|+||... |+...+++.. ..||++|-..|.+.+. ..+-+|+ -+| + +|-++..+
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~-----~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~ 79 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV-----KERPDLLVDQTGQTLRPGILVLVNSCDAEV 79 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC-----CSCHHHHBCSSSSSBCTTEEEEESSSBHHH
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc-----ccchhhEecCCCcccCCCeEEEECCeeeec
Confidence 678888654 3545677763 2599999988877753 2344443 234 2 34444443
Q ss_pred ---hhcccCCCCEEEEEE
Q 015622 60 ---EENKVAENSFVVVML 74 (403)
Q Consensus 60 ---~d~gI~~~s~I~v~v 74 (403)
.+|-+++||.|.++-
T Consensus 80 l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 80 VGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp HTSSCCCCCSSCEEEEEE
T ss_pred cCCcccCCCCcCEEEEeC
Confidence 346799999987753
No 247
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=80.81 E-value=2 Score=32.64 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=43.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEE
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v 74 (403)
|+|+| +|+.+. + ...||.+|.+. .+ +++...-+.++|.++..+ ...++-+++||.|-++-
T Consensus 1 M~I~v---NG~~~e--~-~~~Tl~~LL~~----l~---~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 1 MLVTI---NGEQRE--V-QSASVAALMTE----LD---CTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCEEE---TTEEEC--C-CCSBHHHHHHH----TT---CCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEEC
T ss_pred CEEEE---CCEEEE--c-CCCcHHHHHHH----cC---CCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEc
Confidence 55555 476554 4 56899998764 56 777788888999988433 45566789999998874
No 248
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=80.33 E-value=1 Score=32.26 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHcCCCCCCHHHH--HHHHHHhhCCHHHHHHHH
Q 015622 170 SNLEATVQQILDMGGGSWDRETV--IRALRAAYNNPERAVEYL 210 (403)
Q Consensus 170 ~~~e~~v~~i~eMG~~~f~reqv--~~ALrAafnNpdrAvEyL 210 (403)
+..++.|..|++|| |+-+-- .+.|....+|-.+|++-|
T Consensus 8 ~rl~~al~qMl~MG---F~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 8 PRLIESLSQMLSMG---FSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHHHHHTTT---CCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHcC---CCccccHHHHHHHHccCCHHHHHHHh
Confidence 45789999999999 976544 589999999999999987
No 249
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=80.14 E-value=1.9 Score=33.19 Aligned_cols=63 Identities=16% Similarity=0.233 Sum_probs=44.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-CCCcEEEeCCeecCCcCchhhcccCCCCEEEEEE
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP-ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip-~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v 74 (403)
|+|+| +|+.+.+......||.+|.+.+ + ++ ....-+.++|.++..+ ...++-+++||.|-++-
T Consensus 1 M~I~v---NGe~~e~~~~~~~Tl~~LL~~l----~---~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 1 MNLTV---NGKPSTVDGAESLNVTELLSAL----K---VAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLY 64 (78)
T ss_dssp CEEEE---TTEEEECSSCSCEEHHHHHHHH----T---CSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECC
T ss_pred CEEEE---CCEEEEcCCCCCCcHHHHHHHc----C---CCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEe
Confidence 66655 4765544211568999998754 5 66 6677788999988543 46677789999998773
No 250
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=80.01 E-value=2.8 Score=30.75 Aligned_cols=61 Identities=7% Similarity=0.202 Sum_probs=42.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEE
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v 74 (403)
|+|+| +|+.+ ++....||.+|.+.+ + ++.....+..+|+.+..+ ...+.-+++||.|.++-
T Consensus 1 m~i~v---Ng~~~--~~~~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 1 MQILF---NDQAM--QCAAGQTVHELLEQL----D---QRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp CCEEE---SSCEE--CCCTTCCHHHHHHHH----T---CCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEE
T ss_pred CEEEE---CCEEE--EcCCCCcHHHHHHHc----C---CCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEe
Confidence 55544 57654 556778999999876 4 556667778899887532 23345688999998773
No 251
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=79.97 E-value=4.9 Score=31.89 Aligned_cols=69 Identities=7% Similarity=0.140 Sum_probs=45.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC-cEEEeCCee-----cCCc----CchhhcccCCCCEEE
Q 015622 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKV-----LKDV----TTLEENKVAENSFVV 71 (403)
Q Consensus 2 kI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~-QkLiy~GKi-----L~D~----~tL~d~gI~~~s~I~ 71 (403)
+|++. .+|..+.+.|+++.+..+|.++|...++ +...+ ..|.|.... +..+ ..|.-|.+..++.++
T Consensus 8 kvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~---~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ 83 (89)
T 1vd2_A 8 RVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCS---FDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELL 83 (89)
T ss_dssp EEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTT---CCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCCEE
T ss_pred EEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhC---CCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCCCEE
Confidence 44444 4678889999999999999999999988 65443 677776432 2221 123444555555555
Q ss_pred EEE
Q 015622 72 VML 74 (403)
Q Consensus 72 v~v 74 (403)
++|
T Consensus 84 ihv 86 (89)
T 1vd2_A 84 IHV 86 (89)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 252
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=79.54 E-value=6.6 Score=36.88 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=53.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CcEEEe---CCe--ecCCcCchhhcccCCCCEEEEEE
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIH---QGK--VLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~-~QkLiy---~GK--iL~D~~tL~d~gI~~~s~I~v~v 74 (403)
|.|.|..++| ++.+.|++..|+.+|-..|....| +... .-=|.| +|. -|+.++.|.+.+++.+..+.+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIG---LREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHT---CCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcC---CCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEE
Confidence 4688898888 688999999999999999999999 5432 223443 342 36778888888776666666655
Q ss_pred ecC
Q 015622 75 TKS 77 (403)
Q Consensus 75 ~k~ 77 (403)
+++
T Consensus 78 r~k 80 (294)
T 1ef1_A 78 RAK 80 (294)
T ss_dssp EES
T ss_pred EEE
Confidence 544
No 253
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=78.99 E-value=4.8 Score=34.06 Aligned_cols=51 Identities=25% Similarity=0.336 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCcEEEe--CCeec-----CC--cCchhhcccCCCCEEEEEE
Q 015622 20 EDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVL-----KD--VTTLEENKVAENSFVVVML 74 (403)
Q Consensus 20 ~~TV~~LK~kI~~~~g~~~ip~~~QkLiy--~GKiL-----~D--~~tL~d~gI~~~s~I~v~v 74 (403)
..|+.+|-+.|..++| +. +..-++- ..+.| +| +++|+++||+.|++|.|+-
T Consensus 19 ~~TL~dLV~~l~~~~g---y~-~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYS---YP-QDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHT---CC-SSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcC---CC-CcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 4799999888988898 54 2444432 23444 33 5899999999999998875
No 254
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=78.97 E-value=2 Score=32.67 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=14.4
Q ss_pred hCccchHHHHHHHHhhCHHHHHHHHHcHH
Q 015622 296 ANPQILQPMLQELGKQNPHLMRLIQEHQT 324 (403)
Q Consensus 296 ~NP~lL~~~Lqqi~~~nP~L~~lI~~n~e 324 (403)
+||++. .+||+|. +||..++-...||.
T Consensus 27 ~DP~~~-~~lq~~~-~NP~~~~k~~~nP~ 53 (71)
T 2llw_A 27 QDPVMQ-SILQQAQ-QNPAALQEHMKNPE 53 (71)
T ss_dssp TCTHHH-HHHHHHH-HCHHHHHHHHHSHH
T ss_pred CCHHHH-HHHHHHH-HCHHHHHHHHhCHH
Confidence 566533 3445443 46666655556664
No 255
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=78.83 E-value=7.4 Score=37.01 Aligned_cols=73 Identities=15% Similarity=0.067 Sum_probs=53.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-CCcEEEe--CCe--ecCCcCchhhcccCCCCEEEEEEe
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-SQQMLIH--QGK--VLKDVTTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~-~~QkLiy--~GK--iL~D~~tL~d~gI~~~s~I~v~v~ 75 (403)
+.+.|..++| ++.+.|+.+.|+.+|-..|....| +.. +..=|.| +|. -|+.++.|.+.+++.+..+.+..+
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLG---LRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT---CCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhC---CCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 3578888898 788999999999999999999999 543 2223433 443 277788898887766666655555
Q ss_pred cC
Q 015622 76 KS 77 (403)
Q Consensus 76 k~ 77 (403)
++
T Consensus 99 ~k 100 (314)
T 1h4r_A 99 AK 100 (314)
T ss_dssp ES
T ss_pred EE
Confidence 43
No 256
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=78.49 E-value=3.7 Score=32.65 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=26.0
Q ss_pred CEEEEEeC------C-C-cEEEEEeC--CCCCHHHHHHHHHHHhC
Q 015622 1 MKVFVKTL------K-G-THFEIEVK--PEDKVSDVKKNIETVQG 35 (403)
Q Consensus 1 MkI~VKtl------~-g-k~~~ieV~--~~~TV~~LK~kI~~~~g 35 (403)
|+|+||.. . | +.+++++. ...||.+|...+.+++.
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~ 46 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMI 46 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTC
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCc
Confidence 67888754 2 3 45667776 67899999999988864
No 257
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=78.47 E-value=2.7 Score=34.24 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=31.3
Q ss_pred cCCHHHHHHHHHHHH-cCCChHHHHHHHHHhCCCHHHHHHHH
Q 015622 354 TVTPEEREAIERLEA-MGFDRALVLEVFFACNKNEELAANYL 394 (403)
Q Consensus 354 ~lt~ee~~ai~~l~~-lgf~~~~~~~a~~~c~~ne~~a~~~l 394 (403)
.+++|| |+.+++ .|.+|..|++||..|++|.--|+-+|
T Consensus 63 ~i~~ed---i~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 63 EIPEDD---IELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCHHH---HHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCHHH---HHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 567777 555554 69999999999999999998887766
No 258
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=77.71 E-value=4.1 Score=30.01 Aligned_cols=62 Identities=18% Similarity=0.078 Sum_probs=40.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEE
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v 74 (403)
|+|+|+..+|+. +++....|+.+|-+.|....+ ....-...+|++.+-+ +-|++|+.|.++-
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~-----~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG-----DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH-----HTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc-----cceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 788998778876 455677899999888754332 1122224688876544 4456778777764
No 259
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=76.25 E-value=2.7 Score=31.02 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=24.8
Q ss_pred CchHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 015622 169 GSNLEATVQQILDMGGGSWDRETVIRALRAA 199 (403)
Q Consensus 169 g~~~e~~v~~i~eMG~~~f~reqv~~ALrAa 199 (403)
++..+++|.-|+.+| |.+.++.+|++..
T Consensus 14 ~~~~~ea~~AL~aLG---Y~~~ea~kav~~v 41 (62)
T 1ixs_A 14 SEAAEEAVMALAALG---FKEAQARAVVLDL 41 (62)
T ss_dssp CHHHHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 445678999999999 9999999999876
No 260
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=75.65 E-value=2.7 Score=30.85 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=24.4
Q ss_pred HhhccHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHH
Q 015622 280 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 320 (403)
Q Consensus 280 ~Lr~~pqf~~lR~~vq~NP~lL~~~Lqqi~~~nP~L~~lI~ 320 (403)
.+.++|+|.+.=+-+++||..+..++ +||.+.+.|+
T Consensus 16 ~~m~dP~~~~~lq~i~~NP~~~~~~~-----~dP~v~~~~~ 51 (62)
T 2lnm_A 16 MAFQNPRVQAALMECSENPMNIMKYQ-----NDKEVMDVFN 51 (62)
T ss_dssp HHTTSHHHHHHHHHHTTCGGGHHHHT-----TCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHCHHHHHHHH-----hChHHHHHHH
Confidence 34467888777777778888776432 4788777663
No 261
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=75.15 E-value=11 Score=29.85 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=41.6
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-----C----Cc-------EEEeCCeecCCcC
Q 015622 1 MKVFVKTLK------G-THFEIEVKPEDKVSDVKKNIETVQGSDVYPA-----S----QQ-------MLIHQGKVLKDVT 57 (403)
Q Consensus 1 MkI~VKtl~------g-k~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~-----~----~Q-------kLiy~GKiL~D~~ 57 (403)
|+|+||.+. | +.++++ ..||.+|.+.+...+.. +.. . .. .+..+|+......
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~--l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~ 78 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPA--LKYVIFEKGDEKSEILILCGSINILINGNNIRHLE 78 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGG--GTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChh--HHHHHhcccccccceeccccccEEEECCEEccccC
Confidence 788888663 3 244444 57999999999887421 111 1 12 5667777663221
Q ss_pred chhhcccCCCCEEEEE
Q 015622 58 TLEENKVAENSFVVVM 73 (403)
Q Consensus 58 tL~d~gI~~~s~I~v~ 73 (403)
-.++-+++||.|.++
T Consensus 79 -~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 79 -GLETLLKDSDEIGIL 93 (99)
T ss_dssp -STTSCCCTTEEEEEE
T ss_pred -CCCCCCCCCCEEEEE
Confidence 123458899998876
No 262
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=75.01 E-value=7.4 Score=41.17 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=44.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCC------CCcEEEe----CCe-ecCCc-------------CchhhcccCCC
Q 015622 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH----QGK-VLKDV-------------TTLEENKVAEN 67 (403)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~------~~QkLiy----~GK-iL~D~-------------~tL~d~gI~~~ 67 (403)
.+.+.|-..+||.++|+||-...-+. +|. ++..|-| .|+ +|.|. .||..|+|.+|
T Consensus 275 ~i~VkVLdCDTItQVKeKiLDavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 275 GVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred ceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 47788889999999999998654322 443 3344544 233 46652 37999999999
Q ss_pred CEEEEEEec
Q 015622 68 SFVVVMLTK 76 (403)
Q Consensus 68 s~I~v~v~k 76 (403)
.+|.++-+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999876543
No 263
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=74.26 E-value=10 Score=39.98 Aligned_cols=65 Identities=17% Similarity=0.271 Sum_probs=45.0
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC------CCcEEEe----CCe-ecCCc-------------CchhhcccCC
Q 015622 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH----QGK-VLKDV-------------TTLEENKVAE 66 (403)
Q Consensus 11 k~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~------~~QkLiy----~GK-iL~D~-------------~tL~d~gI~~ 66 (403)
..+.+.|-..+||.++|+||-...-+. +|. ++..|-| .|+ +|.|. .||..|+|.+
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKG-IPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 457788889999999999998765322 433 3445544 233 45541 3689999999
Q ss_pred CCEEEEEEec
Q 015622 67 NSFVVVMLTK 76 (403)
Q Consensus 67 ~s~I~v~v~k 76 (403)
|.+|.++-+.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999987543
No 264
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=73.43 E-value=2.1 Score=39.35 Aligned_cols=24 Identities=13% Similarity=0.476 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 015622 173 EATVQQILDMGGGSWDRETVIRALRAA 199 (403)
Q Consensus 173 e~~v~~i~eMG~~~f~reqv~~ALrAa 199 (403)
+..|+++++|| |+|+.|+.||+-.
T Consensus 170 ~~~v~~~~~mg---~~~~~~~~al~~~ 193 (215)
T 1tte_A 170 HDLIDEFESQG---FEKDKIVEVLRRL 193 (215)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHc
Confidence 67999999999 9999999999743
No 265
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=72.20 E-value=6.4 Score=29.32 Aligned_cols=54 Identities=7% Similarity=0.089 Sum_probs=39.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCc--EEEeCCeecCCcCchhhcccCCCCEEEEE
Q 015622 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ--MLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 11 k~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~Q--kLiy~GKiL~D~~tL~d~gI~~~s~I~v~ 73 (403)
+...+++....||.+|.+.+...+.. .... .+..+|+....+ .-+++||.|.++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~----~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ 71 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ----INNKKFQVAVNEEFVQKS-----DFIQPNDTVALI 71 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG----GTTCCCEEEETTEEECTT-----SEECTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc----hhcceEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 35667777778999999999877431 1233 677899988653 468899998876
No 266
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=72.01 E-value=10 Score=39.76 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=54.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-CCcEEEeC---C--eecCCcCchhhcccCCCCEEEEEE
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-SQQMLIHQ---G--KVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~-~~QkLiy~---G--KiL~D~~tL~d~gI~~~s~I~v~v 74 (403)
|.|.|..++| ++.|.|+++.|+.+|=..|....| +.. +..=|.|. | .-|+.+++|.+.+++.+..+.+..
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~Lg---L~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~F 80 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIG---LREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKF 80 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT---CCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcC---CCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEE
Confidence 4678888888 688999999999999999999999 532 22344442 2 246778888888777777666665
Q ss_pred ecCC
Q 015622 75 TKSK 78 (403)
Q Consensus 75 ~k~k 78 (403)
+++-
T Consensus 81 Rvkf 84 (575)
T 2i1j_A 81 RAKF 84 (575)
T ss_dssp EESS
T ss_pred EEEE
Confidence 5543
No 267
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=71.09 E-value=13 Score=36.25 Aligned_cols=71 Identities=23% Similarity=0.217 Sum_probs=50.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCC---------eecCCcCchhhcccCCCCEEEE
Q 015622 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---------KVLKDVTTLEENKVAENSFVVV 72 (403)
Q Consensus 2 kI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~G---------KiL~D~~tL~d~gI~~~s~I~v 72 (403)
.+.|..++|....+.|+...|+.+|-..|..+.|. ...+..-|.+.. .-|+-+++|.+.++.....+++
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~f 164 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGI--TNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLL 164 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTC--SCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEE
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCC--CCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEE
Confidence 57888999999999999999999999999999993 222334554432 2245567777776655555555
Q ss_pred EE
Q 015622 73 ML 74 (403)
Q Consensus 73 ~v 74 (403)
.+
T Consensus 165 rv 166 (371)
T 3ivf_A 165 RR 166 (371)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 268
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=71.08 E-value=22 Score=26.46 Aligned_cols=56 Identities=5% Similarity=0.087 Sum_probs=36.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCC--CCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEE
Q 015622 12 HFEIEVKPEDKVSDVKKNIETVQGS--DVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~--~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~ 73 (403)
.+.++ ....||.+|++.+...... ..+......+..+|+.... +.-|++||.|.++
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEE
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEe
Confidence 45566 5667999999998754210 0011234567789988753 4468899999887
No 269
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=70.22 E-value=15 Score=29.63 Aligned_cols=74 Identities=18% Similarity=0.071 Sum_probs=49.8
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEE------eCCeecCCcCchhh----cccCCCCEEEE
Q 015622 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI------HQGKVLKDVTTLEE----NKVAENSFVVV 72 (403)
Q Consensus 3 I~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLi------y~GKiL~D~~tL~d----~gI~~~s~I~v 72 (403)
|+|-..+|....|.|+..+|++++-+++..+.++. ....--|+ +--+.|+|...|-+ ..+.....+++
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~--~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F 89 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHAL--SDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCC--CCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCC--CCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEE
Confidence 45556789999999999999999999999998842 12222232 12367888765544 45666677766
Q ss_pred EEecCC
Q 015622 73 MLTKSK 78 (403)
Q Consensus 73 ~v~k~k 78 (403)
.-+.-|
T Consensus 90 ~kr~~K 95 (100)
T 1wgr_A 90 RKNFAS 95 (100)
T ss_dssp CSCCSS
T ss_pred ecchhc
Confidence 544333
No 270
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=69.07 E-value=15 Score=34.81 Aligned_cols=70 Identities=14% Similarity=-0.010 Sum_probs=48.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-CCcEEEeC---C--eecCCcCchhhcccCCCCEEEEE
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-SQQMLIHQ---G--KVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~-~~QkLiy~---G--KiL~D~~tL~d~gI~~~s~I~v~ 73 (403)
|.+.|..++|....+.|++..|+.+|-..|..+.| +.. +..-|.|. | .-|+.++.|.+......-.+++.
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLN---LLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHT---CSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEE
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcC---CCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEE
Confidence 56889999999999999999999999999999999 442 22344442 3 23677788877643333344443
No 271
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=68.86 E-value=16 Score=30.88 Aligned_cols=60 Identities=22% Similarity=0.234 Sum_probs=40.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHh----CCCCCCCC----CcEEEe-C---CeecCC----------c----Cchhhccc
Q 015622 11 THFEIEVKPEDKVSDVKKNIETVQ----GSDVYPAS----QQMLIH-Q---GKVLKD----------V----TTLEENKV 64 (403)
Q Consensus 11 k~~~ieV~~~~TV~~LK~kI~~~~----g~~~ip~~----~QkLiy-~---GKiL~D----------~----~tL~d~gI 64 (403)
..+.+.|-..+||.++|+||-... | +|.. .+.|-| . |.+|.| . .||..|+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~---~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V 115 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNG---SPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEI 115 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHS---SCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTC
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCC---CcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCC
Confidence 357888889999999999997543 5 5443 334433 1 233332 1 26788999
Q ss_pred CCCCEEEEE
Q 015622 65 AENSFVVVM 73 (403)
Q Consensus 65 ~~~s~I~v~ 73 (403)
.+|.+|-++
T Consensus 116 ~Dgatlal~ 124 (126)
T 3kuz_A 116 SNGSTIKVF 124 (126)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEe
Confidence 999999765
No 272
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=67.62 E-value=11 Score=29.44 Aligned_cols=41 Identities=7% Similarity=0.129 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015622 173 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (403)
Q Consensus 173 e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~G 213 (403)
..-+.+|-+.=|.+.++.+++.|.-.+-+|++||+.|+++.
T Consensus 35 ~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 35 YSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 33455555543467999999998888999999999999964
No 273
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=66.96 E-value=7.2 Score=28.32 Aligned_cols=56 Identities=11% Similarity=0.230 Sum_probs=39.4
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEE
Q 015622 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 8 l~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v 74 (403)
++|+.+. + ...||.+|.+.+ + ++.....+..+|+++..+ ...+.-+++||.|.++-
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----G---VELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----T---BCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----C---CCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 4676654 4 568999999876 4 555666777899987543 23344688999998873
No 274
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=65.77 E-value=7.1 Score=35.45 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=33.1
Q ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015622 173 EATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (403)
Q Consensus 173 e~~v~~i~eM-G~~~f~reqv~~ALrAafnNpdrAvEyL~~ 212 (403)
-.+|.+|-++ | +.=-+|..||..+.+|-|.|+|||..
T Consensus 4 a~~VKeLRe~TG---agmmdCKkAL~e~~GD~ekAie~LR~ 41 (196)
T 1aip_C 4 MELIKKLREATG---AGMMDVKRALEDAGWDEEKAVQLLRE 41 (196)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3578999987 7 88889999999999999999999975
No 275
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=65.70 E-value=21 Score=34.50 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=40.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCC-eecCC-cCchhhccc
Q 015622 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG-KVLKD-VTTLEENKV 64 (403)
Q Consensus 11 k~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~G-KiL~D-~~tL~d~gI 64 (403)
....+.+.+..|+.+||++|+..++ ++++.|.|+|.+ +..-+ ......|.-
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t~---i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHC---CCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred eEEEEEcCchhHHHHHHHHHHHhcC---CChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 3466788999999999999999999 999999999998 44434 445555543
No 276
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=65.58 E-value=2.6 Score=30.45 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015622 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (403)
Q Consensus 170 ~~~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~ 212 (403)
.+.++.|+.|.+|= +.++++-++.-|++--.|-|-+|+.||.
T Consensus 10 ~e~~~~~~~L~~MF-P~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 10 NERKDTLNTLQNMF-PDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHHS-TTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHHc-ccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46789999999994 2289999999999999999999999873
No 277
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=65.48 E-value=5.7 Score=32.08 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=40.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC-----------cEEEeCC-eecCC------cCchhhcccCCCCEEEEE
Q 015622 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQ-----------QMLIHQG-KVLKD------VTTLEENKVAENSFVVVM 73 (403)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~-----------QkLiy~G-KiL~D------~~tL~d~gI~~~s~I~v~ 73 (403)
...|+|++++|+.+|-+.|.+.-. +.... ..|++.+ ..|+. +++|.++|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~---~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSAS---LQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTT---CCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChH---hhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 356899999999999999988533 22222 2333332 23322 577999999999998874
No 278
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=65.34 E-value=47 Score=26.04 Aligned_cols=72 Identities=18% Similarity=0.119 Sum_probs=45.2
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCCHHHHHHHHHHHhCCC-CCCCCC-cE---EEe-CCeecCCcCchhhcccCCCCEEEEE
Q 015622 1 MKVFVKTLKGTHFEIEVK-PEDKVSDVKKNIETVQGSD-VYPASQ-QM---LIH-QGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~-~~~TV~~LK~kI~~~~g~~-~ip~~~-Qk---Liy-~GKiL~D~~tL~d~gI~~~s~I~v~ 73 (403)
|||+|+. ++..+.|-.. ...||..|-++--.++-+. ...++. .+ |-+ .|-+|+.+..|.+. +.++++|.-+
T Consensus 3 MKvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A~ 80 (85)
T 2ns5_A 3 FKVTVCF-GRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVAV 80 (85)
T ss_dssp EEEEEEE-TTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEEE
T ss_pred cEEEEEE-CCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEEE
Confidence 8999995 5666777653 4569998876655444210 011222 22 223 77899888889886 6677777654
Q ss_pred E
Q 015622 74 L 74 (403)
Q Consensus 74 v 74 (403)
.
T Consensus 81 ~ 81 (85)
T 2ns5_A 81 F 81 (85)
T ss_dssp E
T ss_pred e
Confidence 3
No 279
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=64.00 E-value=7.2 Score=37.49 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=32.8
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015622 174 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (403)
Q Consensus 174 ~~v~~i~eM-G~~~f~reqv~~ALrAafnNpdrAvEyL~~ 212 (403)
.+|++|-++ | +.=-+|..||..+.+|-|.|+|||..
T Consensus 6 ~~VKeLRe~TG---agmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 6 ELLMKLRRKTG---YSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 578899887 7 88889999999999999999999983
No 280
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=61.07 E-value=13 Score=28.53 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=31.8
Q ss_pred HHHHHHHc-CC-ChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015622 362 AIERLEAM-GF-DRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 362 ai~~l~~l-gf-~~~~~~~a~~~c~~ne~~a~~~l~~~~ 398 (403)
-+++|+|+ |+ |-...-+||-+.++|...|+.||-+..
T Consensus 27 lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~ 65 (80)
T 1vdl_A 27 FLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKN 65 (80)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhccc
Confidence 48899998 87 666777899999999999999998753
No 281
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=58.73 E-value=12 Score=27.54 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHh
Q 015622 359 EREAIERLEAMGFDRALVLEVFFAC 383 (403)
Q Consensus 359 e~~ai~~l~~lgf~~~~~~~a~~~c 383 (403)
..+++.-|+.|||++.++.+|.-.+
T Consensus 17 ~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 17 AEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3579999999999999999998876
No 282
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=58.10 E-value=7.6 Score=32.80 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=28.6
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEe
Q 015622 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH 48 (403)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy 48 (403)
.+.|-.+.||.+||..|+..+| +++++|||-+
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg---~~~~~~RlW~ 90 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMG---FPQDQIRLWP 90 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEE
T ss_pred eEEEeccCcHHHHHHHHHHHhC---CCcccEEEEE
Confidence 5677889999999999999999 9999999853
No 283
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=57.92 E-value=11 Score=30.54 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=31.4
Q ss_pred HHHHHHHHH-cCCCCCCHHHHHHHHHHhhCCHHHHHHHH
Q 015622 173 EATVQQILD-MGGGSWDRETVIRALRAAYNNPERAVEYL 210 (403)
Q Consensus 173 e~~v~~i~e-MG~~~f~reqv~~ALrAafnNpdrAvEyL 210 (403)
++.|.-+|+ +| -+|+++++||+.+.+|.=.|+-||
T Consensus 66 ~edi~lv~~q~~---vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 66 EDDIELVMNQTG---ASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 466888887 68 999999999999999999999987
No 284
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=56.77 E-value=11 Score=40.29 Aligned_cols=50 Identities=18% Similarity=0.339 Sum_probs=40.7
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCe-ecCCcCchhhc
Q 015622 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK-VLKDVTTLEEN 62 (403)
Q Consensus 10 gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GK-iL~D~~tL~d~ 62 (403)
.+.+.+.+.++.|+.+||..|+..+| ++.+.|.|++.+. .|........|
T Consensus 321 ~~~~~~~i~~~~tl~~l~~~i~~~T~---i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 321 GRVHTYPVTENENLQNLKSWLQQDTG---IPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SCCCEEECCTTCCHHHHHHHHHTTSC---CCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred cccceeecCCCccHHHHHHHHHHHhC---CCHHHHHHHhccCCCCCCCcchhhh
Confidence 44567889999999999999999999 9999999998654 45555566665
No 285
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=60.03 E-value=2.5 Score=35.54 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=31.3
Q ss_pred HHHHHHHc-CC-ChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015622 362 AIERLEAM-GF-DRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 362 ai~~l~~l-gf-~~~~~~~a~~~c~~ne~~a~~~l~~~ 397 (403)
-|++|+|+ |. |-+..-+||-+|++|.+.|+.||-++
T Consensus 21 lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 21 LLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 38889998 87 57777899999999999999999765
No 286
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=52.57 E-value=43 Score=25.28 Aligned_cols=58 Identities=10% Similarity=0.247 Sum_probs=36.4
Q ss_pred EEeCCCCCHHHHHHHHHHHhCC--C--CC----CCCCcEEEeCCeecCCcCchhhcccCCCCEEEEE
Q 015622 15 IEVKPEDKVSDVKKNIETVQGS--D--VY----PASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~--~--~i----p~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~ 73 (403)
++++...||.+|.+.+...... . .+ ......+..+|+...... -.+.-+++||.|.++
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEe
Confidence 4555568999999999877420 0 00 013456778888775221 234458999998886
No 287
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=52.51 E-value=30 Score=23.13 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=32.1
Q ss_pred HHHHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHH
Q 015622 172 LEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLY 211 (403)
Q Consensus 172 ~e~~v~~i~eM-G~~~f~reqv~~ALrAafnNpdrAvEyL~ 211 (403)
.++.|.+.++. | -+++.++.-|..+..|-++||...+
T Consensus 5 ~~~~i~~F~~iTg---~~~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 5 RQDALREFVAVTG---AEEDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp HHHHHHHHHHHTC---CCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHHHhC---cCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56789999997 6 6899999999999999999997544
No 288
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=51.85 E-value=27 Score=29.88 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=35.9
Q ss_pred hHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHHH-----HHHHHcCCCh
Q 015622 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAI-----ERLEAMGFDR 373 (403)
Q Consensus 301 L~~~Lqqi~~~nP~L~~lI~~n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~~~lt~ee~~ai-----~~l~~lgf~~ 373 (403)
|..++++|. .|++++...++|+++++-. .||+||++|| .+|..+|-.-
T Consensus 37 LNkf~~sL~--~~~~RerF~aDpeA~l~~~-----------------------gLTeEEr~AV~~rD~~~L~~lGgn~ 89 (139)
T 1b4u_A 37 LNQFAMSLM--KAENRERFKADESAYLDEW-----------------------NLTPAAKAAVLARDYNAMIDEGGNV 89 (139)
T ss_dssp HHHHHHHTT--SHHHHHHHHHCHHHHHHTT-----------------------TCCHHHHHHHHHTCHHHHHHTTCCH
T ss_pred HHHHHHHHC--CHHHHHHHHhCHHHHHHHc-----------------------CCCHHHHHHHHcCCHHHHHHcCCCH
Confidence 457778786 4999999999998887532 4688888884 5577777543
No 289
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=51.55 E-value=7.7 Score=29.22 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=17.7
Q ss_pred ccHHHHHHHHHHHhCccchHH-HHHHHHhhCHHHHHHH
Q 015622 283 NSQQFQALRTMVQANPQILQP-MLQELGKQNPHLMRLI 319 (403)
Q Consensus 283 ~~pqf~~lR~~vq~NP~lL~~-~Lqqi~~~nP~L~~lI 319 (403)
..|.|.++=+-|++||+.+.. .+ +||.+.+.|
T Consensus 30 ~DP~~~~~lq~i~~NP~~i~~~~~-----~dPrv~~~l 62 (71)
T 2llv_A 30 KDPQLVAKLIGYKQNPQAIGQDLF-----TDPRLMTIM 62 (71)
T ss_dssp HSCTHHHHHHHHHHSCTTHHHHTT-----TCHHHHHHH
T ss_pred cCHHHHHHHHHHHHCHHHHHHHHh-----hCcHHHHHH
Confidence 455555555556666666553 22 366666554
No 290
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=50.54 E-value=27 Score=33.99 Aligned_cols=32 Identities=13% Similarity=0.343 Sum_probs=22.5
Q ss_pred cccCCHHHHHH-HHHHHHcCCChHHHHHHHHHh
Q 015622 352 AVTVTPEEREA-IERLEAMGFDRALVLEVFFAC 383 (403)
Q Consensus 352 ~~~lt~ee~~a-i~~l~~lgf~~~~~~~a~~~c 383 (403)
...++.+.+.. |.-|..+||+++.+...+..|
T Consensus 105 lL~~s~e~L~~~l~fL~~lGl~~~~i~~ll~~~ 137 (335)
T 4fp9_B 105 LLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCC 137 (335)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCTTTTHHHHHHHC
T ss_pred hccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 44555555444 888999999988877776665
No 291
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=50.42 E-value=35 Score=31.49 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015622 171 NLEATVQQILDMGGGSWDRETVIRALRA 198 (403)
Q Consensus 171 ~~e~~v~~i~eMG~~~f~reqv~~ALrA 198 (403)
.....|.-+.++| |+++++.+.+..
T Consensus 40 ~l~~~l~fL~~lG---~~~~~i~~il~~ 64 (270)
T 3m66_A 40 DIKQMLLFLKDVG---IEDNQLGAFLTK 64 (270)
T ss_dssp HTHHHHHHHHHHT---CCGGGHHHHHHH
T ss_pred hHHHHHHHHHHcC---CCHHHHHHHHHh
Confidence 4667889999999 999999888754
No 292
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=49.95 E-value=58 Score=26.44 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=45.7
Q ss_pred EEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEE---eCCee--cCCcC--chhhcccCCCCEEEEEEe
Q 015622 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKV--LKDVT--TLEENKVAENSFVVVMLT 75 (403)
Q Consensus 5 VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLi---y~GKi--L~D~~--tL~d~gI~~~s~I~v~v~ 75 (403)
|-..+...+++.+..+.|+.+|+..+.++.+ +..+.++|+ ++|.. |+++. ....+++ +..|++..+
T Consensus 14 Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~--NgRLfvc~k 86 (104)
T 1wgy_A 14 VYITEHSYVSVKAKVSSIAQEILKVVAEKIQ---YAEEDLALVAITFSGEKHELQPNDLVISKSLEA--SGRIYVYRK 86 (104)
T ss_dssp EECSSSCEEEECCCTTCBSHHHHHHHHHHHT---SCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCS--SCEEEEEEC
T ss_pred EEeccCceEEEEEeccchHHHHHHHHHHHhc---CCccceEEEEEccCCcEeecCCcceEEEeeccc--cceEEEeeh
Confidence 4444566678888889999999999999998 655577775 67753 45433 3344444 567777654
No 293
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=48.34 E-value=6.4 Score=29.80 Aligned_cols=48 Identities=29% Similarity=0.495 Sum_probs=35.1
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEE
Q 015622 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~ 73 (403)
.+++....||.+|.+.+ + ++.....+..+|+.+..+ .-|++||.|.++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~---~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----G---FNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----T---CSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----C---CCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 35666678999998765 4 556667788899998765 457888887655
No 294
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=46.32 E-value=86 Score=24.43 Aligned_cols=61 Identities=7% Similarity=0.077 Sum_probs=47.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh-CCCCCC--CC-CcEEEeCC--eecCCcCchhhcccCCCCEEEEEE
Q 015622 13 FEIEVKPEDKVSDVKKNIETVQ-GSDVYP--AS-QQMLIHQG--KVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~~-g~~~ip--~~-~QkLiy~G--KiL~D~~tL~d~gI~~~s~I~v~v 74 (403)
.-+.|+..+|+.++-++++.-. |.. +. +. -.+..++| +.|..+.|+.+-||+.-+.|-+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrR-V~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRR-VHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTT-BCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhccee-cCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 4568999999999999998543 322 32 12 35667888 889999999999999999998875
No 295
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=46.24 E-value=1.2e+02 Score=24.55 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=52.6
Q ss_pred EEEEEeCCC---cEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCcEEEeCC---eecCCcCchhhcccCCCCEEEEE
Q 015622 2 KVFVKTLKG---THFEIEVKPEDKVSDVKKNIETVQGSDVYP--ASQQMLIHQG---KVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 2 kI~VKtl~g---k~~~ieV~~~~TV~~LK~kI~~~~g~~~ip--~~~QkLiy~G---KiL~D~~tL~d~gI~~~s~I~v~ 73 (403)
+|+|...+. ..+++.|..+.-|+-|.-+|-++.. ++ -++--|-.-- -.|+-..+|..|||..+..+++.
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~---i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ft 97 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMN---IAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFT 97 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHC---CSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEE
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcc---cccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeecc
Confidence 578887554 5588999999999999999987765 33 2334444322 24677889999999999999887
Q ss_pred Ee
Q 015622 74 LT 75 (403)
Q Consensus 74 v~ 75 (403)
-.
T Consensus 98 p~ 99 (102)
T 2kmc_A 98 PQ 99 (102)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 296
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=45.01 E-value=82 Score=27.03 Aligned_cols=63 Identities=13% Similarity=0.207 Sum_probs=43.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcE----EEe-----------------CCeec-CCcCchhhcccCCCCEE
Q 015622 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQM----LIH-----------------QGKVL-KDVTTLEENKVAENSFV 70 (403)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~Qk----Liy-----------------~GKiL-~D~~tL~d~gI~~~s~I 70 (403)
+.|-...+.|+.+|-..|.+.... .+...-+ +|| .|+.- +|++||.+++..-||.|
T Consensus 56 lQIYTW~daTLrEL~~Lvk~~~p~--ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 133 (143)
T 4a6q_A 56 LQIYTWMDATLKELTSLVKEVYPE--ARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYL 133 (143)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGG--GGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEE
T ss_pred eEEeeCCCCCHHHHHHHHHHhCcc--ccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEE
Confidence 567777899999999999887542 2222223 333 23322 46899999999999999
Q ss_pred EEEEecC
Q 015622 71 VVMLTKS 77 (403)
Q Consensus 71 ~v~v~k~ 77 (403)
.|-+..+
T Consensus 134 dvaI~pP 140 (143)
T 4a6q_A 134 DIAITPP 140 (143)
T ss_dssp EEEEECG
T ss_pred EEEEeCC
Confidence 9988543
No 297
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=44.53 E-value=14 Score=27.00 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=27.6
Q ss_pred hHHhhccHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHHcHH
Q 015622 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQT 324 (403)
Q Consensus 278 l~~Lr~~pqf~~lR~~vq~NP~lL~~~Lqqi~~~nP~L~~lI~~n~e 324 (403)
++-|.++|.+. .+-+||+++. .||+|. +||.-++-...||.
T Consensus 5 ~~kl~~dPe~~----~~m~dP~~~~-~lq~i~-~NP~~~~~~~~dP~ 45 (62)
T 2lnm_A 5 ISKIMENPDVA----MAFQNPRVQA-ALMECS-ENPMNIMKYQNDKE 45 (62)
T ss_dssp HHHHTTSHHHH----HHTTSHHHHH-HHHHHT-TCGGGHHHHTTCHH
T ss_pred HHHHHcChHHH----HHcCCHHHHH-HHHHHH-HCHHHHHHHHhChH
Confidence 45567777663 3346788664 667665 58887777777876
No 298
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=44.51 E-value=69 Score=25.01 Aligned_cols=61 Identities=10% Similarity=0.105 Sum_probs=48.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh-CCCCCC--CCCcEEEeCCee--cCCcCchhhcccCCCCEEEEEE
Q 015622 13 FEIEVKPEDKVSDVKKNIETVQ-GSDVYP--ASQQMLIHQGKV--LKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~~-g~~~ip--~~~QkLiy~GKi--L~D~~tL~d~gI~~~s~I~v~v 74 (403)
.-+.|+..+|+.++-++++... |.. +. +.-.+..++|.. |.++.++.+-||+.-+.|-++.
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrr-v~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRR-VAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTT-BCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhccee-eCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 4468999999999999998653 322 21 235677899988 9999999999999999998764
No 299
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=44.29 E-value=31 Score=33.04 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=37.8
Q ss_pred cccCCHHHHHHHHHHHHc----C----CChHHHHHHHHHhCCCHHHHHHHHh
Q 015622 352 AVTVTPEEREAIERLEAM----G----FDRALVLEVFFACNKNEELAANYLL 395 (403)
Q Consensus 352 ~~~lt~ee~~ai~~l~~l----g----f~~~~~~~a~~~c~~ne~~a~~~l~ 395 (403)
.-.||+++.++|++|.+. | .+....++=+.+|++|.+.|...|-
T Consensus 32 ~~~lt~~q~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~ 83 (320)
T 3q8g_A 32 PGNLTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFV 83 (320)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 457999999999988865 4 5778889999999999999998874
No 300
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=44.02 E-value=51 Score=24.00 Aligned_cols=47 Identities=23% Similarity=0.260 Sum_probs=40.1
Q ss_pred cccCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015622 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (403)
Q Consensus 165 ~l~~g~~~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~G 213 (403)
.+...+.++.+|+.+.+|= +-++++++..-|+.. +|.+.-+|=++.|
T Consensus 10 ~~~~~sql~~Mve~V~~mF-Pqv~~~~I~~DL~rT-gSVe~TienILeG 56 (58)
T 4g3o_A 10 NLYFQGQLNAMAHQIQEMF-PQVPYHLVLQDLQLT-RSVEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHH-CCHHHHHHHHHTT
T ss_pred HHhhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh-CCHHHHHHHHHcc
Confidence 3445578899999999994 338999999999987 9999999999888
No 301
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=43.96 E-value=64 Score=33.28 Aligned_cols=58 Identities=14% Similarity=0.068 Sum_probs=41.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCcEE--EeCCee---cCCcCchhhcccCCCCEEEE
Q 015622 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYP---ASQQML--IHQGKV---LKDVTTLEENKVAENSFVVV 72 (403)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip---~~~QkL--iy~GKi---L~D~~tL~d~gI~~~s~I~v 72 (403)
.+.|-|..+.||.||-..+.++.+ ++ ....|| +|+||+ +.++.+|..++=....++.+
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~---~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~ri 418 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVE---LGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRI 418 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCC---CCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC---CCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEE
Confidence 466778889999999999998888 55 456777 488875 67788888653221444444
No 302
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=43.85 E-value=13 Score=25.71 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=15.9
Q ss_pred HHHHHHHHHhCccchHHHHHHHHh
Q 015622 287 FQALRTMVQANPQILQPMLQELGK 310 (403)
Q Consensus 287 f~~lR~~vq~NP~lL~~~Lqqi~~ 310 (403)
=+++-.++.+||+|+-.+|.|-.+
T Consensus 19 qqqvl~ILksnPqLMAAfIkQR~~ 42 (47)
T 1zoq_C 19 QQQVLNILKSNPQLMAAFIKQRTA 42 (47)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHH
Confidence 345667777788777777766443
No 303
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.67 E-value=35 Score=24.76 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHHc
Q 015622 171 NLEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 212 (403)
Q Consensus 171 ~~e~~v~~i~eM-G~~~f~reqv~~ALrAafnNpdrAvEyL~~ 212 (403)
..++.|++.|++ | -+++.++.-|.++-+|.++||...+.
T Consensus 14 ~~~e~i~qF~~iTg---~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 14 ALKGLIQQFTTITG---ASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHHHHTC---CCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 456789999997 6 77999999999999999999986554
No 304
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=42.42 E-value=14 Score=26.66 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q 015622 371 FDRALVLEVFFACNKNEELAANYL 394 (403)
Q Consensus 371 f~~~~~~~a~~~c~~ne~~a~~~l 394 (403)
|.++.+.+++..|++|...||..|
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 457889999999999999998876
No 305
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.71 E-value=1.3e+02 Score=23.79 Aligned_cols=50 Identities=10% Similarity=0.128 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCcEEEe--CCeecCCcCchhhcccCCCCEEEEEEec
Q 015622 21 DKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 21 ~TV~~LK~kI~~~~g~~~ip~~~QkLiy--~GKiL~D~~tL~d~gI~~~s~I~v~v~k 76 (403)
.+..+|+.|...+++ ++....+|+. .|.+++|+.-+..+ +.+++.|++.+
T Consensus 28 ~sL~EL~~K~~~~l~---l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~ 79 (91)
T 2eel_A 28 SSLQELISKTLDALV---IATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEK 79 (91)
T ss_dssp SSHHHHHHHHHHHTT---CSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEET
T ss_pred CCHHHHHHHHHHHhc---CCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcC
Confidence 379999999999998 7655666653 69888887665543 24555555543
No 306
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=41.28 E-value=63 Score=24.55 Aligned_cols=62 Identities=24% Similarity=0.242 Sum_probs=42.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEEe
Q 015622 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 2 kI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v~ 75 (403)
+|+|.+.+|..+ ++....|+.|+=..|....+.. -.--..+|+...-+ +-+++|+.|.++..
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~~-----~v~AkVNG~~v~L~-----~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGNR-----MIGAKVDGRIVPID-----YKVKTGEIIDVLTT 68 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHHT-----EEEEEETTEEECTT-----CBCCTTCBEEEEEC
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhcc-----eEEEEECCEEcCCC-----cccCCCCEEEEEcc
Confidence 578888899765 4567789999988887776621 12223477766543 45778898887754
No 307
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=41.15 E-value=81 Score=24.75 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=41.6
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEe-CCeec-CCcCchhhc--ccCCCCEEEEEEec
Q 015622 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-QGKVL-KDVTTLEEN--KVAENSFVVVMLTK 76 (403)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy-~GKiL-~D~~tL~d~--gI~~~s~I~v~v~k 76 (403)
.+-|..+.||.+|...|.++.. +.+++--.+| +...+ ..+.+++++ ..+++.+++|.-..
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~---l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~Ys~ 86 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLK---LVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCK 86 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTT---CCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEEEES
T ss_pred EEEcCCCCCHHHHHHHHHHHhC---CCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEEEeC
Confidence 4567889999999999999988 6666544444 55544 446676655 23467888887653
No 308
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=40.79 E-value=60 Score=23.43 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHH
Q 015622 354 TVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANY 393 (403)
Q Consensus 354 ~lt~ee~~ai~~l~~l-gf~~~~~~~a~~~c~~ne~~a~~~ 393 (403)
.|+++..+-|.+|... |-..+=+...+..|+||-+.|..-
T Consensus 2 ~ls~~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~ 42 (59)
T 1oai_A 2 TLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQA 42 (59)
T ss_dssp CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4788888889888886 899999999999999999999874
No 309
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=40.25 E-value=15 Score=28.41 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHhCCCHHHHHHHH
Q 015622 372 DRALVLEVFFACNKNEELAANYL 394 (403)
Q Consensus 372 ~~~~~~~a~~~c~~ne~~a~~~l 394 (403)
.+..+.++|..|++|...||..|
T Consensus 42 Er~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 42 RWEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 36677899999999999999876
No 310
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=40.03 E-value=1.3e+02 Score=23.64 Aligned_cols=57 Identities=7% Similarity=-0.009 Sum_probs=41.1
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeec-CCcCchhhc--ccCCCCEEEEEEe
Q 015622 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL-KDVTTLEEN--KVAENSFVVVMLT 75 (403)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL-~D~~tL~d~--gI~~~s~I~v~v~ 75 (403)
.+-|..+.||..|...|.++.+ + +..-|+.+...+ .-+.+++++ ..+++++|+|.-.
T Consensus 26 KflV~~~~t~~~~v~~lRkrL~---l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Ys 85 (91)
T 3w1s_C 26 VCKISMSQSFAMVILFLKRRLK---M--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSYC 85 (91)
T ss_dssp EEEEETTSBHHHHHHHHHHHHT---C--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHhhC---C--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEEe
Confidence 4568899999999999999988 5 555555577644 446677665 3346778887764
No 311
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=39.60 E-value=32 Score=27.72 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=23.6
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhC
Q 015622 10 GTHFEIEVKPEDKVSDVKKNIETVQG 35 (403)
Q Consensus 10 gk~~~ieV~~~~TV~~LK~kI~~~~g 35 (403)
+..+.|-|.++.+..+|..+|..+.+
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~ 47 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKIS 47 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHc
Confidence 44688999999999999999999988
No 312
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=38.69 E-value=33 Score=24.51 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=31.7
Q ss_pred cccCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcCCC
Q 015622 165 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 215 (403)
Q Consensus 165 ~l~~g~~~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~GIP 215 (403)
.++.+..+.+.+.+ |+|+-+..||+.+-+|..+|.+.| ||.
T Consensus 5 ~~~~~~~l~~~l~~--------~E~~~i~~aL~~~~gn~~~aA~~L--Gis 45 (63)
T 3e7l_A 5 YLLKIKELKEAKKE--------FEKIFIEEKLREYDYDLKRTAEEI--GID 45 (63)
T ss_dssp TTTTCSCHHHHHHH--------HHHHHHHHHHHHTTTCHHHHHHHH--TCC
T ss_pred HhccCCCHHHHHHH--------HHHHHHHHHHHHhCCCHHHHHHHH--CcC
Confidence 34455556665553 789999999999999999999988 654
No 313
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=38.59 E-value=22 Score=33.51 Aligned_cols=55 Identities=16% Similarity=0.269 Sum_probs=41.0
Q ss_pred hHHhhccHHHHHHHHHHHhCcc--chHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcC
Q 015622 278 LDFLRNSQQFQALRTMVQANPQ--ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 332 (403)
Q Consensus 278 l~~Lr~~pqf~~lR~~vq~NP~--lL~~~Lqqi~~~nP~L~~lI~~n~e~Fl~~l~~ 332 (403)
.+||++.-...+|++|++.++. -|.-=+..|..-+|+|+..|..||..++.++.+
T Consensus 19 ~~Fl~~~~Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~ 75 (279)
T 1ltl_A 19 EEFFSLQDYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQ 75 (279)
T ss_dssp HHHTTSHHHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHhhCCCCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHH
Confidence 4688775456788998854443 333335677788999999999999999999753
No 314
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=38.11 E-value=1.3e+02 Score=24.70 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=40.9
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEe-CCeecCCcCchhhc--cc-CCCCEEEEEEec
Q 015622 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-QGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (403)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy-~GKiL~D~~tL~d~--gI-~~~s~I~v~v~k 76 (403)
+-|..+.||.+|...|..+.. +.+++--.+| ++....-+.+++++ .- .++.+|+|....
T Consensus 51 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~ 113 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIM---LPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSG 113 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhC---cCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 347889999999999999988 6665544444 55544556777665 22 356688887653
No 315
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=37.98 E-value=78 Score=26.58 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=41.7
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEE-eCCeec-CCcCchhhc--cc-CCCCEEEEEEe
Q 015622 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-HQGKVL-KDVTTLEEN--KV-AENSFVVVMLT 75 (403)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLi-y~GKiL-~D~~tL~d~--gI-~~~s~I~v~v~ 75 (403)
+-|..+.||.+|...|..+.+ +.+++--.+ |.++.+ .-+.+++++ .- .++.+|+|..+
T Consensus 57 flVp~~~tv~qf~~~iRkrL~---l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQ---LNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 119 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHhC---CCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEe
Confidence 457789999999999999998 766665545 766555 456677765 22 34678888765
No 316
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=37.83 E-value=1.1e+02 Score=25.18 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=42.5
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCC-cEEEeCCeecCCcCchhhc--cc-CCCCEEEEEEec
Q 015622 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (403)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~-QkLiy~GKiL~D~~tL~d~--gI-~~~s~I~v~v~k 76 (403)
+-|..+.||.+|...|..+.+ +.+++ .-|+.++....-+.+++++ .- .++.+|+|....
T Consensus 52 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~ 114 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQ---LEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSG 114 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEcCCCCCHHHHHHHHHHHhC---CCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 357889999999999999998 66665 4445577766667777765 23 356688887653
No 317
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=37.62 E-value=51 Score=25.88 Aligned_cols=34 Identities=18% Similarity=0.057 Sum_probs=25.2
Q ss_pred EEEEEeCCCcE-EEEEeC-CCCCHHHHHHHHHHHhC
Q 015622 2 KVFVKTLKGTH-FEIEVK-PEDKVSDVKKNIETVQG 35 (403)
Q Consensus 2 kI~VKtl~gk~-~~ieV~-~~~TV~~LK~kI~~~~g 35 (403)
.|+.|....+. ..|.++ ...+|.+||+.|..+.+
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~k 43 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREK 43 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHT
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhC
Confidence 35666665554 456777 45799999999999887
No 318
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=37.30 E-value=57 Score=24.51 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=24.2
Q ss_pred HhhccHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHH
Q 015622 280 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 320 (403)
Q Consensus 280 ~Lr~~pqf~~lR~~vq~NP~lL~~~Lqqi~~~nP~L~~lI~ 320 (403)
.+.++|++.++=+-+++||..+..++. ||.++..|+
T Consensus 24 ~im~DP~~~~~lq~~~~NP~~~~k~~~-----nP~v~~~i~ 59 (71)
T 2llw_A 24 AIMQDPVMQSILQQAQQNPAALQEHMK-----NPEVFKKIQ 59 (71)
T ss_dssp HHHTCTHHHHHHHHHHHCHHHHHHHHH-----SHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHCHHHHHHHHh-----CHHHHHHHH
Confidence 355677777666667777777765543 777777664
No 319
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=36.91 E-value=46 Score=26.53 Aligned_cols=59 Identities=8% Similarity=-0.046 Sum_probs=41.3
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCcCchhhcccCCCCEEEEEE
Q 015622 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 11 k~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~v 74 (403)
+.+.+++....||.++-+...-......+.....++-.+|++.. .+.-+++||.|-++-
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 35677888999999998887542221014455678888888887 344578899998874
No 320
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=36.34 E-value=1.1e+02 Score=25.61 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=41.5
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEe-CCeecCCcCchhhc--ccC-CCCEEEEEEec
Q 015622 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-QGKVLKDVTTLEEN--KVA-ENSFVVVMLTK 76 (403)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy-~GKiL~D~~tL~d~--gI~-~~s~I~v~v~k 76 (403)
+-|..+.||.+|...|..+.. +.+++--.+| ++....-+.+++++ .-+ ++.+|+|..+.
T Consensus 57 flVp~~~tv~qf~~~IRkrl~---L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~ 119 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSD 119 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEES
T ss_pred EEcCCCCEeeeehhhhHhhcC---CCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEecC
Confidence 356789999999999999988 6666644444 55544557777766 223 56788887654
No 321
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=36.33 E-value=32 Score=28.28 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=21.3
Q ss_pred HHHHHHHHHhCccchHHHHHHHHhhCHHHHHHH
Q 015622 287 FQALRTMVQANPQILQPMLQELGKQNPHLMRLI 319 (403)
Q Consensus 287 f~~lR~~vq~NP~lL~~~Lqqi~~~nP~L~~lI 319 (403)
+.+|++++..||+....+|. +||||.-.|
T Consensus 58 L~qmK~~~~~nP~~a~~LL~----q~PQLAyAl 86 (109)
T 2l9b_A 58 LQKFQEWTRAHPEDAASLLE----LCPQLSFVT 86 (109)
T ss_dssp HHHHHHHHHHCHHHHHHHHH----HCHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHH----HCchHHHHH
Confidence 34778888888887776665 688877554
No 322
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=36.09 E-value=1.1e+02 Score=24.73 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=39.0
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCC-cEEEeCCeecCCcCchhhc--cc-CCCCEEEEEE
Q 015622 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVML 74 (403)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~-QkLiy~GKiL~D~~tL~d~--gI-~~~s~I~v~v 74 (403)
+-|..+.||.+|...|....+ +.+++ .-|+.++....-+.+|+++ .. .++.+|+|..
T Consensus 48 flVp~~~tv~~~~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Y 108 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAY 108 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHhc---CCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEEEEE
Confidence 455668899999999999988 66655 3444455544556777766 22 3467888765
No 323
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=36.08 E-value=88 Score=25.63 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=40.6
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCc-EEEeCCeecCCcCchhhc--cc-CCCCEEEEEEec
Q 015622 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQ-MLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (403)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~~~ip~~~Q-kLiy~GKiL~D~~tL~d~--gI-~~~s~I~v~v~k 76 (403)
+-|..+.||.+|...|..+.+ +.+++- -|+.++....-+.+|+++ .. .++.+|+|....
T Consensus 49 flVp~~~tv~~f~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 111 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQ---LPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSG 111 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEcCCCCCHHHHHHhhHHhhc---CCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 346678899999999999988 666553 444455544556777766 22 347789888754
No 324
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=35.90 E-value=37 Score=27.38 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=27.6
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHh-------hCCHHHHHHHHHcC
Q 015622 175 TVQQILDMGGGSWDRETVIRALRAA-------YNNPERAVEYLYSG 213 (403)
Q Consensus 175 ~v~~i~eMG~~~f~reqv~~ALrAa-------fnNpdrAvEyL~~G 213 (403)
.|++.++|| |.+..|+++++-- |...+.-|.=|+.+
T Consensus 30 vV~~alemG---f~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~ 72 (104)
T 2kna_A 30 MVQEAIRMG---FSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNA 72 (104)
T ss_dssp HHHHHHHTT---CCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHH
T ss_pred HHHHHHHcC---ccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 799999999 9999999998763 45555555555544
No 325
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=35.52 E-value=61 Score=33.23 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=32.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhC
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQG 35 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g 35 (403)
|.+.|..++|....+.|+...|+.+|-..|..+.|
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lg 251 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLA 251 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTT
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcC
Confidence 45788999999999999999999999999999999
No 326
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=35.15 E-value=1.2e+02 Score=25.21 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=46.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHH-hCC--C--CCCCCCcEEEeCCeecC--CcCchhhcccCCCCEEEEE
Q 015622 13 FEIEVKPEDKVSDVKKNIETV-QGS--D--VYPASQQMLIHQGKVLK--DVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~-~g~--~--~ip~~~QkLiy~GKiL~--D~~tL~d~gI~~~s~I~v~ 73 (403)
+.+-|.++++.++|-+.+-.- ++. | .|.-++-.+..+|+... .+++|.+.||..++.|.+.
T Consensus 40 ~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 40 FALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp EEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred eeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 678899999999988776543 231 0 14455667888999984 4789999999999988765
No 327
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=31.53 E-value=62 Score=26.10 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHhCCCCCCCC--CcEEE--eCCeecCCcCchhhcccCCCCEEEEEEe
Q 015622 21 DKVSDVKKNIETVQGSDVYPAS--QQMLI--HQGKVLKDVTTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 21 ~TV~~LK~kI~~~~g~~~ip~~--~QkLi--y~GKiL~D~~tL~d~gI~~~s~I~v~v~ 75 (403)
.+..+|+.|...+++ ++.. ..+|+ ..|.+++|+.-+..+ .+ +++.+++.
T Consensus 37 ~SL~EL~~K~~~~l~---l~~~~~~~~lvLeeDGT~VddEeYF~tL--p~-nT~lmvL~ 89 (100)
T 1f2r_I 37 SSLEELRSKACELLA---IDKSLTPITLVLAEDGTIVDDDDYFLCL--PS-NTKFVALA 89 (100)
T ss_dssp SSHHHHHHHHHHHHC---CCGGGCSCEEEESSSCCBCCSSSSSSSS--CS-CCEEEEEC
T ss_pred CCHHHHHHHHHHHhc---cCCCCCceEEEEeeCCcEEechhHhhcC--CC-CCEEEEEc
Confidence 379999999999999 7542 34553 479999887665543 34 44444443
No 328
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=30.28 E-value=53 Score=24.42 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=26.6
Q ss_pred cCCHHHHHHHHHHHH-cCCChHHHHHHHHHh
Q 015622 354 TVTPEEREAIERLEA-MGFDRALVLEVFFAC 383 (403)
Q Consensus 354 ~lt~ee~~ai~~l~~-lgf~~~~~~~a~~~c 383 (403)
.||+-|++.|..+.+ .||+.+.+..|+.-|
T Consensus 17 ~ls~~e~~~i~~w~~~~~~~~elI~~A~~~a 47 (78)
T 2zc2_A 17 MLSPFELEDLQKTVSDDKTDPDLVRSALREA 47 (78)
T ss_dssp CCCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 578899999988875 699999999999998
No 329
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=29.46 E-value=1.2e+02 Score=25.23 Aligned_cols=63 Identities=14% Similarity=0.221 Sum_probs=41.8
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC------CcEEE---eCCee--cCCcC--chhhcccCCCCEEEEEE
Q 015622 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS------QQMLI---HQGKV--LKDVT--TLEENKVAENSFVVVML 74 (403)
Q Consensus 8 l~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~------~QkLi---y~GKi--L~D~~--tL~d~gI~~~s~I~v~v 74 (403)
.+...+++.+..+.|+.+|+..+..+.+ +..+ .++|+ ++|.. |+++. ....+++ +..|++..
T Consensus 17 ~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~--NgRLfvc~ 91 (120)
T 2dhz_A 17 PDHSYVTIRSRLSASVQDILGSVTEKLQ---YSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGI--NSHLFACT 91 (120)
T ss_dssp TTSCCCCEEECTTCCHHHHHHHHHHHST---TCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCS--SEEEEEEC
T ss_pred ccCceEEEEEeccccHHHHHHHHHHHhc---cccccccccCceEEEEEccCCcEeecCCcceEEEeeccc--cceEEEee
Confidence 3444566788888999999999999998 4333 67775 67743 45433 3455555 56676664
Q ss_pred e
Q 015622 75 T 75 (403)
Q Consensus 75 ~ 75 (403)
+
T Consensus 92 k 92 (120)
T 2dhz_A 92 R 92 (120)
T ss_dssp T
T ss_pred h
Confidence 3
No 330
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=29.00 E-value=66 Score=29.86 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=36.2
Q ss_pred cccCCHHHHHHHHHHHHc----C----CChHHHHHHHHHhCCCHHHHHHHHh
Q 015622 352 AVTVTPEEREAIERLEAM----G----FDRALVLEVFFACNKNEELAANYLL 395 (403)
Q Consensus 352 ~~~lt~ee~~ai~~l~~l----g----f~~~~~~~a~~~c~~ne~~a~~~l~ 395 (403)
.-.+|+++.++|+.|.+. | .+....++=+.+|++|.+.|...|-
T Consensus 23 ~~~l~~~q~~~l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~ 74 (296)
T 1aua_A 23 PGNLDSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFE 74 (296)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHH
Confidence 346899999999888763 4 5778888999999999999998874
No 331
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=28.94 E-value=85 Score=25.47 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHc----CCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015622 358 EEREAIERLEAM----GFDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 358 ee~~ai~~l~~l----gf~~~~~~~a~~~c~~ne~~a~~~l~~~ 397 (403)
|=-++|++|..| ..|--.|.+||+.+.++-+.|..||+..
T Consensus 9 ~vg~~~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~~ 52 (111)
T 3k6g_A 9 EVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASG 52 (111)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhCC
Confidence 333445555543 6688899999999999999999999864
No 332
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=28.64 E-value=1.4e+02 Score=25.93 Aligned_cols=56 Identities=11% Similarity=0.174 Sum_probs=37.1
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCC---------CCCcEEEeCCeecCCcCchhhcccCCCCEEEEE
Q 015622 14 EIEVKPEDKVSDVKKNIETVQGSDVYP---------ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g~~~ip---------~~~QkLiy~GKiL~D~~tL~d~gI~~~s~I~v~ 73 (403)
.++++. .||.+|.+.+...+.. +. .....+..||+...... -.++-|++||.|.++
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~--l~~~l~~~~~l~~~v~VaVNg~~v~~~~-~~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPA--LKEELFEGEGLAERVSVFLEGRDVRYLQ-GLSTPLSPGATLDLF 81 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGG--GHHHHEETTEECTTCEEEETTEEGGGTT-GGGCBCCTTCEEEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChh--hhhhhhcccccCCcEEEEECCEECCCcC-CCccCCCCCCEEEEE
Confidence 345655 8999999999877420 10 13446677888775432 234568999998887
No 333
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.81 E-value=1.5e+02 Score=21.76 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015622 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (403)
Q Consensus 170 ~~~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~G 213 (403)
.+.++.|++.+++-+ -=+.+.++.-|..+-+|-++||...+.+
T Consensus 16 ~~~~e~i~qF~~ITg-~~d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 16 QEQTEKLLQFQDLTG-IESMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHHHHHHHHHHHHC-CSCHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 446778999999852 1278889999999999999999877665
No 334
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=27.69 E-value=92 Score=22.37 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHH
Q 015622 355 VTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANY 393 (403)
Q Consensus 355 lt~ee~~ai~~l~~l-gf~~~~~~~a~~~c~~ne~~a~~~ 393 (403)
|+++..+-|.+|... |-..+=....+..|+||-+.|..-
T Consensus 2 l~~~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~ 41 (57)
T 2jp7_A 2 LNPVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKG 41 (57)
T ss_dssp CCHHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 677777778888776 888888888999999998888753
No 335
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=27.26 E-value=19 Score=33.52 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=41.1
Q ss_pred HHhhccH-------HHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHHcHHHHHHHhc
Q 015622 279 DFLRNSQ-------QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 331 (403)
Q Consensus 279 ~~Lr~~p-------qf~~lR~~vq~NP~lL~~~Lqqi~~~nP~L~~lI~~n~e~Fl~~l~ 331 (403)
+||++.- ...+|++++..+-.-|.-=+..|..-+|+|+..|..||..++.++.
T Consensus 16 ~Fl~~f~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~ 75 (268)
T 2vl6_A 16 EFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILE 75 (268)
T ss_dssp HHHHHCCCSSSSCTTHHHHHHHHHTTCCCEEEEHHHHHHHCHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHhhhcccCchHHHHHHHHHHHcCCcEEEEEHHHHHhhhHHHHHHHHHCHHHHHHHHH
Confidence 5676532 3678889888877666655677888899999999999998888864
No 336
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=27.03 E-value=62 Score=28.38 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=19.4
Q ss_pred ccccCCHHHHHHHHHHHHcCCC
Q 015622 351 QAVTVTPEEREAIERLEAMGFD 372 (403)
Q Consensus 351 ~~~~lt~ee~~ai~~l~~lgf~ 372 (403)
..+.+++||.+++++|.++|..
T Consensus 123 ~~V~v~~ed~~~lk~L~~~Gv~ 144 (168)
T 3eye_A 123 SKVYVDDQDLTDLRFIKQRGVN 144 (168)
T ss_dssp TTEEECHHHHHHHHHHHHTTCE
T ss_pred ccEeeCHHHHHHHHHHHHCCCE
Confidence 3688999999999999999953
No 337
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=26.98 E-value=57 Score=28.69 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=35.9
Q ss_pred chHHHHHHHH-HHcCCCCCCH---HHHHHHHHHhhCC-HHHHHHHHHcC--CCCC
Q 015622 170 SNLEATVQQI-LDMGGGSWDR---ETVIRALRAAYNN-PERAVEYLYSG--IPEQ 217 (403)
Q Consensus 170 ~~~e~~v~~i-~eMG~~~f~r---eqv~~ALrAafnN-pdrAvEyL~~G--IP~~ 217 (403)
+..+..|+.| .|-| |.+ ++|..||+..-.+ |..-.+||..| ||.+
T Consensus 61 s~~~~Lv~~l~~e~G---i~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N 112 (168)
T 3cz6_A 61 SQAEKLVQDLCDETG---IRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPN 112 (168)
T ss_dssp TCHHHHHHHHHHHHC---BCHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTT
T ss_pred hhHHHHHHHHHHHhC---cccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCC
Confidence 4567788888 6788 865 5777899999999 99888999998 7765
No 338
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=26.91 E-value=20 Score=27.76 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.7
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q 015622 371 FDRALVLEVFFACNKNEELAANYL 394 (403)
Q Consensus 371 f~~~~~~~a~~~c~~ne~~a~~~l 394 (403)
|.+..+.++|..|++|...||..|
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L 74 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL 74 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 457788999999999999999876
No 339
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=26.89 E-value=37 Score=30.99 Aligned_cols=26 Identities=12% Similarity=0.265 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Q 015622 172 LEATVQQILDMGGGSWDRETVIRALRAAY 200 (403)
Q Consensus 172 ~e~~v~~i~eMG~~~f~reqv~~ALrAaf 200 (403)
.++++.-|+.+| |.+.++.+|++...
T Consensus 164 ~~ea~~AL~~LG---y~~~ea~~av~~~~ 189 (212)
T 2ztd_A 164 RSPVVEALVGLG---FAAKQAEEATDTVL 189 (212)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 467999999999 99999999998873
No 340
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=26.53 E-value=1.2e+02 Score=24.00 Aligned_cols=57 Identities=11% Similarity=0.041 Sum_probs=39.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCe-ec-CCcCchhhc--ccCCCCEEEEEEec
Q 015622 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK-VL-KDVTTLEEN--KVAENSFVVVMLTK 76 (403)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GK-iL-~D~~tL~d~--gI~~~s~I~v~v~k 76 (403)
.+-|..+.||.+|...|.++.+ +. ..-| |-+. .+ .-+.+++++ ..+++.+|+|..+.
T Consensus 31 KflV~~~~t~~~~~~~lRkrL~---l~--alFl-yvn~~~~Ps~d~~m~~LY~~~kdDGfLyi~Ys~ 91 (96)
T 1wz3_A 31 KFKVSGSDKFANVIDFLRRQLH---SD--SLFV-YVNSAFSPNPDESVIDLYNNFGFDGKLVVNYAC 91 (96)
T ss_dssp EEEEETTSBTHHHHHHHHHHHT---CS--SCEE-EEEEEECCCTTSBHHHHHHHHCBTTBEEEEEES
T ss_pred EEEeCCCCcHHHHHHHHHHhcC---Cc--eEEE-EECCcccCChhhHHHHHHHHhCCCCEEEEEEeC
Confidence 4567889999999999999988 54 4455 4444 44 456677665 33446788877653
No 341
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=26.10 E-value=95 Score=33.33 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=39.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCC--------CcEEEeCCe--ec----CC--cCchhhcccCCCCEEEEE
Q 015622 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPAS--------QQMLIHQGK--VL----KD--VTTLEENKVAENSFVVVM 73 (403)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~--------~QkLiy~GK--iL----~D--~~tL~d~gI~~~s~I~v~ 73 (403)
..+.++.+.|+.+|-+.|..+.... +... ..+++|... .| ++ +++|+++||++|+.|+|.
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 714 QNIQFSPSAKLQEVLDYLTNSASLQ-MKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp EEEEECTTSBHHHHHHHHHHCTTTC-CSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred EEEEECCcChHHHHHHHHHhhhccC-cccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 4567777889999988888753300 2111 135566532 11 12 678999999999998875
No 342
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=25.69 E-value=1.2e+02 Score=32.20 Aligned_cols=46 Identities=9% Similarity=-0.000 Sum_probs=37.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEe
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH 48 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy 48 (403)
|.+.|..++|....+.|+...|+.+|-..|..+.|. ...+..-|.|
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL--~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISL--KDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTC--SSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCC--cccccceeEE
Confidence 467899999999999999999999999999999993 2334455554
No 343
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=25.64 E-value=1.4e+02 Score=23.88 Aligned_cols=54 Identities=0% Similarity=-0.015 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCcEEEeCC---ee--cCCc-CchhhcccCCCCEEEEEEec
Q 015622 21 DKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV--LKDV-TTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 21 ~TV~~LK~kI~~~~g~~~ip~~~QkLiy~G---Ki--L~D~-~tL~d~gI~~~s~I~v~v~k 76 (403)
.+...|+.+|...+.. +......|.|.. -. +.++ .....+.....+.+.|.|+.
T Consensus 42 ~s~~~L~~~V~~lFp~--l~~~~f~l~Y~DedGDlItiSsDeEL~~Al~~~~~~~lRlyVke 101 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPA--LRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVKDDIFRIYIKE 101 (102)
T ss_dssp CHHHHHHHHHHHHCTT--SCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCCSSEEEEEEEE
T ss_pred ccHHHHHHHHHHHccc--cCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcCCCeEEEEEEc
Confidence 4799999999999752 444567777754 22 2332 22222333345677777753
No 344
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=25.62 E-value=2.4e+02 Score=26.57 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=45.3
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEE--e-C---CeecCCcCchhhc----ccCCCCEEEE
Q 015622 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--H-Q---GKVLKDVTTLEEN----KVAENSFVVV 72 (403)
Q Consensus 3 I~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLi--y-~---GKiL~D~~tL~d~----gI~~~s~I~v 72 (403)
|.|-..+|....|.|++++|+.+|-..+..+.++ .....--|+ | . -+.|.|...|-+. .....+.+++
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~--~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f 111 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHC--GYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIF 111 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCC--CCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCC--CCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEE
Confidence 4444567888999999999999999998888873 222233332 1 1 2668887765543 4555566555
Q ss_pred E
Q 015622 73 M 73 (403)
Q Consensus 73 ~ 73 (403)
.
T Consensus 112 ~ 112 (281)
T 4gmv_A 112 M 112 (281)
T ss_dssp E
T ss_pred E
Confidence 4
No 345
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=25.23 E-value=1.3e+02 Score=21.59 Aligned_cols=45 Identities=20% Similarity=0.252 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHc-CCCCCCHHHHHHHHHHhhCCHHHHHHHHH----cC-CCCC
Q 015622 170 SNLEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLY----SG-IPEQ 217 (403)
Q Consensus 170 ~~~e~~v~~i~eM-G~~~f~reqv~~ALrAafnNpdrAvEyL~----~G-IP~~ 217 (403)
++.+++|..+... | ...+=...+|.-.-.|.+||+.-.. .| ||++
T Consensus 5 ~~q~~mv~~~s~~Tg---mn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 5 PEQQEMLQAFSTQSG---MNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp HHHHHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCSCGG
T ss_pred HHHHHHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHH
Confidence 3567888888887 7 8889999999999999999996532 24 8864
No 346
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=25.06 E-value=90 Score=20.19 Aligned_cols=26 Identities=27% Similarity=0.593 Sum_probs=18.7
Q ss_pred HHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHH-HHHHHH
Q 015622 323 QTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREA-IERLEA 368 (403)
Q Consensus 323 ~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~~~lt~ee~~a-i~~l~~ 368 (403)
|.+|..+|..+ .||+|++.. |++|++
T Consensus 6 QnaFYevLh~~--------------------nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 6 QRRFYEALHDP--------------------NLNEEQRNAKIKSIRD 32 (34)
T ss_dssp HHHHHHHHHCT--------------------TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--------------------CCCHHHHHhHHHHHhc
Confidence 45788888643 468888877 888865
No 347
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=24.95 E-value=1.3e+02 Score=24.70 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=30.2
Q ss_pred cCCHHHHHHHHHHHH-cCCChHHHHHHHHHhC-CCHHHHHH
Q 015622 354 TVTPEEREAIERLEA-MGFDRALVLEVFFACN-KNEELAAN 392 (403)
Q Consensus 354 ~lt~ee~~ai~~l~~-lgf~~~~~~~a~~~c~-~ne~~a~~ 392 (403)
.++++|++.+.++.. +|++..+..+.+..|+ -....+..
T Consensus 34 ~v~~~E~~~l~~~l~~lgl~~~e~~~l~~~~~~~~~~~~~~ 74 (133)
T 2h5n_A 34 KIKPAEIAVMTREFMRFGILQDQVDLLLKASDSIEASQAVA 74 (133)
T ss_dssp CCCHHHHHHHHHHHGGGTCCHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhccHHHHHH
Confidence 578999999999876 8999988888887775 34555554
No 348
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=24.56 E-value=52 Score=28.62 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=22.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHH
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKK 28 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~ 28 (403)
|+|+++ ++|+.+.++++++.|+.++-.
T Consensus 4 ~~i~~~-vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 4 ITINLN-LNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEEE-ETTEEEEEEECSSSBHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCCHHHHHH
Confidence 467776 789999999999999988754
No 349
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=24.48 E-value=65 Score=33.22 Aligned_cols=70 Identities=11% Similarity=0.242 Sum_probs=52.2
Q ss_pred EEEEeCC--CcEEE----EEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeC----C--eecC-CcCchhhc--ccCCC
Q 015622 3 VFVKTLK--GTHFE----IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ----G--KVLK-DVTTLEEN--KVAEN 67 (403)
Q Consensus 3 I~VKtl~--gk~~~----ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~----G--KiL~-D~~tL~d~--gI~~~ 67 (403)
|++|-.+ .+++. +-|..+.+|.+|-..|.+..| +|++.--++|. + ..|+ .+.++.++ .|.+|
T Consensus 133 lFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g---~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~G 209 (530)
T 2ylm_A 133 LFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAG---FIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDG 209 (530)
T ss_dssp EEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHT---CCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTT
T ss_pred EEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcC---CCCCCceEEEEecCCCceeEcccccccHHHHHhcccCC
Confidence 5666553 23332 578889999999999999999 88886655564 2 3467 47799999 99999
Q ss_pred CEEEEEEe
Q 015622 68 SFVVVMLT 75 (403)
Q Consensus 68 s~I~v~v~ 75 (403)
+.|++=..
T Consensus 210 dII~fQ~~ 217 (530)
T 2ylm_A 210 DIIVFQKD 217 (530)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEec
Confidence 98776653
No 350
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=24.44 E-value=54 Score=28.63 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=22.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 015622 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (403)
Q Consensus 2 kI~VKtl~gk~~~ieV~~~~TV~~LK~k 29 (403)
+|+|+ ++|+.+.+++++..||.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHH
Confidence 56666 7899999999999999987554
No 351
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=24.07 E-value=78 Score=24.72 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=32.4
Q ss_pred cccCCHHHHHHHHHHHHcC-C-ChHHHHHHHHHhCCCHHHH
Q 015622 352 AVTVTPEEREAIERLEAMG-F-DRALVLEVFFACNKNEELA 390 (403)
Q Consensus 352 ~~~lt~ee~~ai~~l~~lg-f-~~~~~~~a~~~c~~ne~~a 390 (403)
.|.|+++-.+-|+.+++-| | ++.+||+..+......+..
T Consensus 7 sIsL~~~l~~~i~~~V~sG~Y~s~SEviR~~lR~l~~re~~ 47 (88)
T 3kxe_C 7 SVVLGDHFQAFIDSQVADGRYGSASEVIRAGLRLLEENEAK 47 (88)
T ss_dssp EECCCHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHH
Confidence 6789999999999999987 6 8999999988777665543
No 352
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=23.89 E-value=97 Score=25.24 Aligned_cols=69 Identities=16% Similarity=0.238 Sum_probs=43.3
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-------CcEEE---eCCee--cCC-cCchhhcccCCCCE
Q 015622 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-------QQMLI---HQGKV--LKD-VTTLEENKVAENSF 69 (403)
Q Consensus 3 I~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~-------~QkLi---y~GKi--L~D-~~tL~d~gI~~~s~ 69 (403)
|.+-..+|-.+.+++..+.|+.++|..+.++-.. +|.. .-.+. ..|.+ |.| .+.|.++... -..
T Consensus 22 v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~--~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf-~pi 98 (108)
T 2v1y_A 22 VECLLPNGMIVTLECLREATLITIKHELFKEARK--YPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QPF 98 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGG--STTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-SSE
T ss_pred EEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHh--CchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-ceE
Confidence 3344457888899999999999999999988442 3221 11221 12333 755 4788888765 344
Q ss_pred EEEEE
Q 015622 70 VVVML 74 (403)
Q Consensus 70 I~v~v 74 (403)
+.|+-
T Consensus 99 Lklve 103 (108)
T 2v1y_A 99 LKVIE 103 (108)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 54443
No 353
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=23.88 E-value=67 Score=24.54 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=28.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----CCCcEEEeCC
Q 015622 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYP-----ASQQMLIHQG 50 (403)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~ip-----~~~QkLiy~G 50 (403)
.+.|-|.++.+..+|..+|..+.+ .. ....+|-|+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~---~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKIS---NTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTT---TTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHc---ccccccccceeEEEEEc
Confidence 578899999999999999999998 43 2456666654
No 354
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=23.69 E-value=76 Score=25.02 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=24.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 015622 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (403)
Q Consensus 2 kI~VKtl~gk~~~ieV~~~~TV~~LK~k 29 (403)
+|+|...+|+.++|++....||.+.-.+
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~ 29 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRD 29 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHH
Confidence 7899999999999999999999886543
No 355
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=23.15 E-value=58 Score=28.24 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=22.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 015622 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (403)
Q Consensus 1 MkI~VKtl~gk~~~ieV~~~~TV~~LK~k 29 (403)
|.|+|+ ++|+.+.+++++..||.++-..
T Consensus 10 m~i~~~-ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISAT-INGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 456666 7899999999999999887654
No 356
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.06 E-value=1.9e+02 Score=20.91 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=36.5
Q ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015622 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (403)
Q Consensus 170 ~~~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~G 213 (403)
+..+.+|..+.+|= +-++++.+..-|+-.- |.+.-+|=++.|
T Consensus 11 ~q~~~mv~~V~~mf-P~vp~~~I~~DL~~Tg-sVe~TienILeG 52 (58)
T 2ejs_A 11 SQLNAMAHQIQEMF-PQVPYHLVLQDLQLTR-SVEITTDNILEG 52 (58)
T ss_dssp CHHHHHHHHHHHHC-CSSCHHHHHHHHHHHC-SHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc-CCCCHHHHHHHHHHhC-CHHHHHHHHHhc
Confidence 56789999999994 3389999999998765 999999999988
No 357
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.67 E-value=1.6e+02 Score=21.54 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=36.4
Q ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCCHHHHHHHHHcC
Q 015622 170 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 213 (403)
Q Consensus 170 ~~~e~~v~~i~eMG~~~f~reqv~~ALrAafnNpdrAvEyL~~G 213 (403)
++++.+|..+.+|= +-++++.+..-|+-. +|.+.-+|=+|.|
T Consensus 11 ~ql~~mv~~V~~mf-P~vp~~~I~~DL~~T-gsVe~TienILeG 52 (61)
T 2ekf_A 11 VQLATLAQRVKEVL-PHVPLGVIQRDLAKT-GCVDLTITNLLEG 52 (61)
T ss_dssp CCHHHHHHHHHHHC-SSSCHHHHHHHHHTS-CCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHc-CCCCHHHHHHHHHHh-CCHHHHHHHHHcC
Confidence 45789999999994 338999999999876 5999999999998
No 358
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=22.61 E-value=42 Score=30.28 Aligned_cols=25 Identities=12% Similarity=0.347 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 015622 172 LEATVQQILDMGGGSWDRETVIRALRAA 199 (403)
Q Consensus 172 ~e~~v~~i~eMG~~~f~reqv~~ALrAa 199 (403)
.++++.-|+.+| |.+.++.+|++..
T Consensus 160 ~~ea~~AL~~LG---y~~~ea~~av~~~ 184 (203)
T 1cuk_A 160 EQEAVARLVALG---YKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHT---CCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHh
Confidence 468999999999 9999999999986
No 359
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=22.49 E-value=1.6e+02 Score=27.40 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=35.8
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeC-------CeecCCcCchhh
Q 015622 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ-------GKVLKDVTTLEE 61 (403)
Q Consensus 3 I~VKtl~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~-------GKiL~D~~tL~d 61 (403)
|+|-.-+|....|.|++++|+.+|-..+..+.+ +..+.-..+|. -+.|+|...+-+
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~---~~~~~~W~l~E~~~~l~lER~ledhE~V~e 73 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSH---SVDDNSWTLVEHHPHLGLERCLEDHELVVQ 73 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC----------EEEEEEETTTTEEEECCTTSBHHH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcC---CCCCCCEEEEEECCCcccccccccchhHHH
Confidence 455556788899999999999999998888766 33232222321 266888665543
No 360
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=22.21 E-value=1.5e+02 Score=24.49 Aligned_cols=54 Identities=0% Similarity=-0.015 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCcEEEeCC---ee--cCC-cCchhhcccCCCCEEEEEEec
Q 015622 21 DKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV--LKD-VTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 21 ~TV~~LK~kI~~~~g~~~ip~~~QkLiy~G---Ki--L~D-~~tL~d~gI~~~s~I~v~v~k 76 (403)
.+...|+.+|...+.. +......|.|.. -. +.+ +.....+.......+.|.|+.
T Consensus 57 ~s~~~L~~kV~~lFp~--L~~~~f~l~YkDEdGDlItISsDeEL~~Al~~~~~~~lRlyVke 116 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPA--LRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVKDDIFRIYIKE 116 (117)
T ss_dssp CHHHHHHHHHHHHCTT--SCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCCSSEEEEEEEE
T ss_pred CCHHHHHHHHHHHccc--cCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcCCCeEEEEEEe
Confidence 4899999999999842 444567777754 22 232 222222333335677777653
No 361
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.98 E-value=1.7e+02 Score=23.59 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=35.6
Q ss_pred EEEEEe-CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCee
Q 015622 2 KVFVKT-LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV 52 (403)
Q Consensus 2 kI~VKt-l~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKi 52 (403)
.|.||. ..|.++.|.|....+..+|..|+...+| ...-|.|-...
T Consensus 8 dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fG------q~ldL~y~n~E 53 (103)
T 2cu1_A 8 DVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFG------QSMDLHYTNNE 53 (103)
T ss_dssp EEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHS------SCEEEEECSSS
T ss_pred cEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhC------CeeeEEEecce
Confidence 355654 3678899999999999999999999999 35667776544
No 362
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=21.75 E-value=43 Score=23.85 Aligned_cols=22 Identities=9% Similarity=0.087 Sum_probs=18.3
Q ss_pred ChHHHHHHHHHhCCCHHHHHHHH
Q 015622 372 DRALVLEVFFACNKNEELAANYL 394 (403)
Q Consensus 372 ~~~~~~~a~~~c~~ne~~a~~~l 394 (403)
.+..+.++|..| +|...||..|
T Consensus 22 Er~~I~~aL~~~-gn~~~aA~~L 43 (61)
T 1g2h_A 22 EAQVLKLFYAEY-PSTRKLAQRL 43 (61)
T ss_dssp HHHHHHHHHHHS-CSHHHHHHHT
T ss_pred HHHHHHHHHHHh-CCHHHHHHHh
Confidence 466778899999 9999998876
No 363
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=21.73 E-value=36 Score=24.61 Aligned_cols=15 Identities=20% Similarity=0.736 Sum_probs=6.4
Q ss_pred HHHHhCccchHHHHH
Q 015622 292 TMVQANPQILQPMLQ 306 (403)
Q Consensus 292 ~~vq~NP~lL~~~Lq 306 (403)
.++.+||+|+-.+|.
T Consensus 31 ~ILksNPqLMAAfIK 45 (59)
T 1kbh_B 31 NILKSNPQLMAAFIK 45 (59)
T ss_dssp HHHTTSHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHH
Confidence 344444444444443
No 364
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=21.54 E-value=89 Score=21.17 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=22.2
Q ss_pred cccCCHHHHHHHHHHHHc-CCChHHHHHH
Q 015622 352 AVTVTPEEREAIERLEAM-GFDRALVLEV 379 (403)
Q Consensus 352 ~~~lt~ee~~ai~~l~~l-gf~~~~~~~a 379 (403)
.+.||+||.+.|+...+. |.+..+.|..
T Consensus 19 ~vRlt~eE~~~l~~~A~~~g~s~SeyiR~ 47 (51)
T 2ba3_A 19 TLRFSPVEDETIRKKAEDSGLTVSAYIRN 47 (51)
T ss_dssp EEEECHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 578999999999988775 8876666543
No 365
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=21.27 E-value=69 Score=27.87 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=22.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 015622 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (403)
Q Consensus 2 kI~VKtl~gk~~~ieV~~~~TV~~LK~k 29 (403)
.|+++ ++|+.+.++++++.||.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 5 IITVN-VNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 56665 7899999999999999986554
No 366
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=21.24 E-value=48 Score=26.27 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=20.0
Q ss_pred ChHHHHHHHHHhCCCHHHHHHHH
Q 015622 372 DRALVLEVFFACNKNEELAANYL 394 (403)
Q Consensus 372 ~~~~~~~a~~~c~~ne~~a~~~l 394 (403)
.+..+.++|..|++|...||..|
T Consensus 59 Er~~I~~aL~~~~gn~~~AA~~L 81 (98)
T 1eto_A 59 EQPLLDMVMQYTLGNQTRAALMM 81 (98)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 46778899999999999999876
No 367
>1pgy_A SWA2P; UBA, ubiquitin, auxilin, ubiquitin-associated domain, protein binding; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=20.77 E-value=1.9e+02 Score=19.91 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=23.9
Q ss_pred HHHHHH-HHHHHHcCCChHHHHHHHHHhCCCHH
Q 015622 357 PEEREA-IERLEAMGFDRALVLEVFFACNKNEE 388 (403)
Q Consensus 357 ~ee~~a-i~~l~~lgf~~~~~~~a~~~c~~ne~ 388 (403)
.|.++. |.||+.||++-+.+..-|..--.=|.
T Consensus 4 DEvkDmEiAkLMSLGl~id~A~~~Ye~gi~ye~ 36 (47)
T 1pgy_A 4 DEVKDMEIARLMSLGLSIEEATEFYENDVTYER 36 (47)
T ss_dssp HHHHHHHHHHHHHHCCCSHHHHHHHHHHCSSHH
T ss_pred hHHHHHHHHHHHHccCChhhHHHHHHcCchHHH
Confidence 344443 99999999999999988876555443
No 368
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=20.67 E-value=1.7e+02 Score=23.08 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=33.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCc-EEEeCCeec
Q 015622 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ-MLIHQGKVL 53 (403)
Q Consensus 11 k~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~Q-kLiy~GKiL 53 (403)
..+.|.|+...|=.++|+.|+..++ +.+... .|++.||.=
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~---VkV~~VnT~~~~gK~k 68 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFE---VEVEVVNTLVVKGKVK 68 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSC---CCCCEEEEEEECCCBC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcC---CceEEEEEEEeCCcee
Confidence 5799999999999999999999999 777776 456788753
No 369
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=20.19 E-value=55 Score=26.88 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=26.4
Q ss_pred HHHHHHHHhCccchHHHHHHHHhhCHHHHHHHH
Q 015622 288 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 320 (403)
Q Consensus 288 ~~lR~~vq~NP~lL~~~Lqqi~~~nP~L~~lI~ 320 (403)
+.+.++...||+++..||+.+..++|+-++.|+
T Consensus 18 ~~~l~~a~g~~~La~elL~~fl~~~~~~~~~l~ 50 (123)
T 3iqt_A 18 QLALRQAAGKTDLARDMLQMLLDFLPEVRNKVE 50 (123)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778899999999999888888777775
No 370
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=20.16 E-value=2.2e+02 Score=22.49 Aligned_cols=45 Identities=27% Similarity=0.206 Sum_probs=35.7
Q ss_pred EEEEe-CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCcEEEeCCeec
Q 015622 3 VFVKT-LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL 53 (403)
Q Consensus 3 I~VKt-l~gk~~~ieV~~~~TV~~LK~kI~~~~g~~~ip~~~QkLiy~GKiL 53 (403)
|.||. ..|.++.|.+..-....+|..++...+| ...-|.|-.+.|
T Consensus 5 vRIKfE~~gEKRIi~f~RPvkf~dl~qkv~~afG------q~ldl~y~nnEL 50 (94)
T 2jrh_A 5 VRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFG------QPLDLHYMNNEL 50 (94)
T ss_dssp EEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHC------SSEEEEEECSSC
T ss_pred eEEEEEecCceEEEecCCCccHHHHHHHHHHHhC------CeeeeEEeccee
Confidence 44443 3688899999999999999999999999 466777766543
Done!