BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015623
(403 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
pdb|1PXZ|B Chain B, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
Length = 346
Score = 331 bits (848), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 167/319 (52%), Positives = 214/319 (67%), Gaps = 16/319 (5%)
Query: 55 NPIDDCWRCDPNWEGNRQRLADCAIGFGRDAIGGRNGRIYVVTDSGDDNPTNPKPGTLRH 114
NPID CWR D NW+ NR +LADCA+GFG +GG+ G Y VT S DDNP NP PGTLR+
Sbjct: 2 NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVT-STDDNPVNPTPGTLRY 60
Query: 115 AVIQDEPLWIIFNRDMVIKLNQELVMNSHKTIDGRGASVHIADG-PCITIHFATNIIIHG 173
+++ LWIIF+++M IKL L + HKTIDGRGA VH+ +G PC+ + +++I+H
Sbjct: 61 GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120
Query: 174 IHIHDCKKAGNGNIRDS------PEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGL 227
+HIH C + G++ S P H A DGD +++ + + WIDH SLS+C DGL
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGL 175
Query: 228 IDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQ 287
ID GST ITISNN+F +H KVMLLGH D+Y DK+M+ T+AFN FG QRMPR R
Sbjct: 176 IDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARY 235
Query: 288 GYFHVVNNDYTEWQMYAIGGSAAPTINSQGNRFFAPNERFRKEVTKHE--DAPESEWRNW 345
G HV NN+Y W +YAIGGS+ PTI S+GN F AP+E ++KEVTK ++P S NW
Sbjct: 236 GLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESP-SACANW 294
Query: 346 NWRSEGDLMLNGAYFRQSG 364
WRS D +NGAYF SG
Sbjct: 295 VWRSTRDAFINGAYFVSSG 313
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The
Pectate Lyase From Thermotoga Maritima
Length = 340
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 102/209 (48%), Gaps = 24/209 (11%)
Query: 124 IIFNRDMVIKLNQELVMNSHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCKKAG 183
I+ + +V + +E+ + S KTI G + + G + I A N+II IH
Sbjct: 50 IVVDGTIVFEPKREIKVLSDKTIVGINDAKIVGGG--LVIKDAQNVIIRNIHFEGFY--- 104
Query: 184 NGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNY 243
+ D P + D D +++ +S HIWIDH + N DG +D S IT+S N
Sbjct: 105 ---MEDDPRGKKY----DFDYINVENSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNK 157
Query: 244 FTHHDKVMLLGHSDSYTQDKNMQA-TIAFNH-FGEGLVQRMPRCRQGYFHVVNNDYTE-- 299
F HDKV L+G SD ++ QA + ++H + + L+QRMPR R G HV NN Y+
Sbjct: 158 FVDHDKVSLVGSSDKEDPEQAGQAYKVTYHHNYFKNLIQRMPRIRFGMAHVFNNFYSMGL 217
Query: 300 --------WQMYAIGGSAAPTINSQGNRF 320
+ +Y + + ++ +GN F
Sbjct: 218 RTGVSGNVFPIYGVASAMGAKVHVEGNYF 246
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47
Length = 416
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 95/216 (43%), Gaps = 46/216 (21%)
Query: 138 LVMNSHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWW 197
+ + S+ +I G G I G + I N+II I + PE W
Sbjct: 128 VYVGSNTSIIGVGKDAKIKGGGFL-IKNVDNVIIRNIEFE-------APLDYFPE----W 175
Query: 198 DASDG---------DGVSIFSSQHIWIDHCSLSNC-----------------QDGLIDAI 231
D +DG D +SI S HIWIDH + ++ DG +D
Sbjct: 176 DPTDGTLGEWNSEYDSISIEGSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIK 235
Query: 232 HGSTAITISNNYFTHHDKVMLLGHSDSYTQDK-NMQATIAFNHFGEGLVQRMPRCRQGYF 290
+ S ITIS N FT+HDKV L+G SDS D +++ T+ N++ + + QR+PR R G
Sbjct: 236 NSSDFITISYNVFTNHDKVTLIGASDSRMADSGHLRVTLHHNYY-KNVTQRLPRVRFGQV 294
Query: 291 HVVNNDYTEWQM------YAIGGSAAPTINSQGNRF 320
H+ NN Y + YA G I +Q N F
Sbjct: 295 HIYNNYYEFSNLADYDFQYAWGVGVFSQIYAQNNYF 330
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase
Length = 420
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 28/138 (20%)
Query: 187 IRDSPEHSGWWDASDG---------DGVSIFSSQHIWIDHCSLSNC-------------- 223
+D+ ++ WD +DG D ++I HIWIDHC+ ++
Sbjct: 180 FQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRK 239
Query: 224 ---QDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDK-NMQATIAFNHFGEGLV 279
DG DA +G+ IT+S NY+ HDK + G SDS T D ++ T+ N + + +V
Sbjct: 240 YQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIV 298
Query: 280 QRMPRCRQGYFHVVNNDY 297
QR PR R G HV NN Y
Sbjct: 299 QRAPRVRFGQVHVYNNYY 316
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1OOC|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
Length = 361
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 127/295 (43%), Gaps = 47/295 (15%)
Query: 133 KLNQELVMNSHKTIDGRGASVHIADGPCIT--IHFATNIIIHGIHIHDCKKAGNGNIRDS 190
K ++ + ++ T+ G G +G I N+II ++I ++
Sbjct: 78 KARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPI-----DVEPH 132
Query: 191 PEHSGWWDASDGDGVSIFS-SQHIWIDHCSLSNC-----------------QDGLIDAIH 232
E W+A + D ++I + + H+WIDH ++S+ DG +D
Sbjct: 133 YEKGDGWNA-EWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKR 191
Query: 233 GSTAITISNNYFTHHDKVMLLGHSDSY-TQDKNMQATIAFNHFGEGLVQRMPRCRQGYFH 291
GS +TISN+ HDK ML+GHSDS +QDK FN+ + +R PR R G H
Sbjct: 192 GSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIH 251
Query: 292 VVNN-------DYTEWQMYAIGGSAAPTINSQGNRFFAPNERFRK--EVTKHEDAPESEW 342
NN D Y+ G + ++ S+GN F N K +V K
Sbjct: 252 SFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKK-------- 303
Query: 343 RNWNWRSEGDLMLNGAYFRQSGAGASSTYARASSL-NARPST--LVGPMTMRAGA 394
N + S+ +LNG+ SG G S+ ++ + + +P T L +T AG+
Sbjct: 304 FNGSIFSDNGSVLNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGS 358
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant
Length = 420
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 68/138 (49%), Gaps = 28/138 (20%)
Query: 187 IRDSPEHSGWWDASDG---------DGVSIFSSQHIWIDHCSLSNC-------------- 223
+D+ ++ WD +DG D ++I HIWIDHC+ ++
Sbjct: 180 FQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRK 239
Query: 224 ---QDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDK-NMQATIAFNHFGEGLV 279
DG DA +G+ IT+S NY+ HDK + G SDS T D ++ T+ N + + +V
Sbjct: 240 YQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIV 298
Query: 280 QRMPRCRQGYFHVVNNDY 297
Q+ PR R G HV NN Y
Sbjct: 299 QKAPRVRFGQVHVYNNYY 316
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase
pdb|2O04|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Ii
pdb|2O0V|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iii
pdb|2O0W|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iv
pdb|2O17|A Chain A, Pectate Lyase Bound To Hexasaccharide
pdb|2O1D|A Chain A, Pectate Lyase Bound To Trisaccharide
Length = 399
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 28/138 (20%)
Query: 187 IRDSPEHSGWWDASDG---------DGVSIFSSQHIWIDHCSLSNC-------------- 223
+D+ ++ WD +DG D ++I HIWIDHC+ ++
Sbjct: 159 FQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRK 218
Query: 224 ---QDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDK-NMQATIAFNHFGEGLV 279
DG DA +G+ IT+S NY+ HDK + G SDS T D ++ T+ N + + +V
Sbjct: 219 YQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIV 277
Query: 280 QRMPRCRQGYFHVVNNDY 297
Q PR R G HV NN Y
Sbjct: 278 QAAPRVRFGQVHVYNNYY 295
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JRG|B Chain B, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JTA|A Chain A, Crystal Structure Of Pectate Lyase A (C2 Form)
Length = 361
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 127/295 (43%), Gaps = 47/295 (15%)
Query: 133 KLNQELVMNSHKTIDGRGASVHIADGPCIT--IHFATNIIIHGIHIHDCKKAGNGNIRDS 190
K ++ + ++ T+ G G +G I N+II ++I ++
Sbjct: 78 KARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPI-----DVEPH 132
Query: 191 PEHSGWWDASDGDGVSIFS-SQHIWIDHCSLSNC-----------------QDGLIDAIH 232
E W+A + D ++I + + H+WIDH ++S+ DG +D
Sbjct: 133 YEKGDGWNA-EWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKR 191
Query: 233 GSTAITISNNYFTHHDKVMLLGHSDSYT-QDKNMQATIAFNHFGEGLVQRMPRCRQGYFH 291
GS +TISN+ HDK ML+GH+D+ + QDK FN+ + +R PR R G H
Sbjct: 192 GSDYVTISNSLIDQHDKTMLIGHNDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIH 251
Query: 292 VVNN-------DYTEWQMYAIGGSAAPTINSQGNRFFAPNERFRK--EVTKHEDAPESEW 342
NN D Y+ G + ++ S+GN F N K +V K
Sbjct: 252 SFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKK-------- 303
Query: 343 RNWNWRSEGDLMLNGAYFRQSGAGASSTYARASSL-NARPST--LVGPMTMRAGA 394
N + S+ +LNG+ SG G S+ ++ + + +P T L +T AG+
Sbjct: 304 FNGSIFSDNGSVLNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGS 358
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The
Anti Beta-Elimination Mechanism Of Pectate Lyase
Length = 399
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 62/122 (50%), Gaps = 20/122 (16%)
Query: 194 SGWWDASDGDGVSIFSSQHIWIDHCSLSNC-----------------QDGLIDAIHGSTA 236
SG W AS D ++I HIWIDHC+ ++ DG DA +G+
Sbjct: 176 SGNW-ASQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANY 234
Query: 237 ITISNNYFTHHDKVMLLGHSDSYTQDK-NMQATIAFNHFGEGLVQRMPRCRQGYFHVVNN 295
IT+S NY+ HD + G SDS T D ++ T+ N + + +VQR PR R G HV NN
Sbjct: 235 ITMSYNYYHDHDASSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPRVRFGQVHVYNN 293
Query: 296 DY 297
Y
Sbjct: 294 YY 295
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In
Pectate Lyases
Length = 355
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 44/225 (19%)
Query: 133 KLNQELVMNSHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPE 192
K ++ + S+ TI G G++ +G + I N+I+ ++I + +P
Sbjct: 71 KARSQISIPSNTTIIGVGSNGKFTNGSLV-IKGVKNVILRNLYIETP-------VDVAPH 122
Query: 193 HS---GW---WDASDGDGVSIFSSQHIWIDHCSLSNCQ-----------------DGLID 229
+ GW WDA+ I +S ++W+DH ++S+ DG +D
Sbjct: 123 YESGDGWNAEWDAA-----VIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALD 177
Query: 230 AIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAF-NHFGEGLVQRMPRCRQG 288
GS +TIS + F HDK +L+GHSDS + + + F N+ + + +R PR R G
Sbjct: 178 IKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFG 237
Query: 289 YFHVVNNDY-------TEWQMYAIGGSAAPTINSQGNRFFAPNER 326
H NN Y +Y+ G + +I S+ N F N +
Sbjct: 238 SIHAYNNVYLGDVKHSVYPYLYSFGLGTSGSILSESNSFTLSNLK 282
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165
pdb|3VMW|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165 In Complex With Trigalacturonate
Length = 326
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 40/179 (22%)
Query: 157 DGPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIF---SSQHI 213
DG I + A NIII + IH + +G+G +I S+++
Sbjct: 93 DGIGIRLSNAHNIIIQNVSIHHVR--------------------EGEGTAIEVTDDSKNV 132
Query: 214 WIDHCSL---------SNCQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSD--SYTQD 262
WIDH S+ DGL+D + IT+S N F +H K ML+GH+D S D
Sbjct: 133 WIDHNEFYSEFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHWKTMLVGHTDNASLAPD 192
Query: 263 KNMQATIAFNH-FGEGLVQRMPRCRQGYFHVVNNDYTEWQMYAIGGSAAPTINSQGNRF 320
K I ++H + L R+P R H+ NN + + AI + + N F
Sbjct: 193 K-----ITYHHNYFNNLNSRVPLIRYADVHMFNNYFKDINDTAINSRVGARVFVENNYF 246
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
pdb|2QX3|B Chain B, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
Length = 330
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Query: 213 IWIDH----CSLSNCQ-------DGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQ 261
IW+DH SL+ C DG ID G +T+S NY ++ KV L G+SDS T+
Sbjct: 129 IWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTK 188
Query: 262 DKNMQATIAFNHFGEGLVQRMPRCRQGYFHVVNNDYTEWQMYAIGGSAAPTINSQGNRFF 321
+ + T N F E + R+P R+G H+ NN + I + N F
Sbjct: 189 NSAARTTYHHNRF-ENVESRVPLQRRGLSHIYNNYFNNVTTSGINVRMGGIAKIESNYF- 246
Query: 322 APNERFRKEVTKHEDAPESEW 342
E + VT + + W
Sbjct: 247 ---ENIKNPVTSRDSSEIGYW 264
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris
pdb|2QXZ|B Chain B, Pectate Lyase R236f From Xanthomonas Campestris
Length = 330
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 60/141 (42%), Gaps = 16/141 (11%)
Query: 213 IWIDH----CSLSNCQ-------DGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQ 261
IW+DH SL+ C DG ID G +T+S NY ++ KV L G+SDS T+
Sbjct: 129 IWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTK 188
Query: 262 DKNMQATIAFNHFGEGLVQRMPRCRQGYFHVVNNDYTEWQMYAIGGSAAPTINSQGNRFF 321
+ + T N F E + R+P R G H+ NN + I + N F
Sbjct: 189 NSAARTTYHHNRF-ENVESRVPLQRFGLSHIYNNYFNNVTTSGINVRMGGIAKIESNYF- 246
Query: 322 APNERFRKEVTKHEDAPESEW 342
E + VT + + W
Sbjct: 247 ---ENIKNPVTSRDSSEIGYW 264
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris
pdb|2QY1|B Chain B, Pectate Lyase A31g/r236f From Xanthomonas Campestris
Length = 330
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 60/141 (42%), Gaps = 16/141 (11%)
Query: 213 IWIDH----CSLSNCQ-------DGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQ 261
IW+DH SL+ C DG ID G +T+S NY ++ KV L G+SDS T+
Sbjct: 129 IWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTK 188
Query: 262 DKNMQATIAFNHFGEGLVQRMPRCRQGYFHVVNNDYTEWQMYAIGGSAAPTINSQGNRFF 321
+ + T N F E + R+P R G H+ NN + I + N F
Sbjct: 189 NSAARTTYHHNRF-ENVESRVPLQRFGLSHIYNNYFNNVTTSGINVRMGGIAKIESNYF- 246
Query: 322 APNERFRKEVTKHEDAPESEW 342
E + VT + + W
Sbjct: 247 ---ENIKNPVTSRDSSEIGYW 264
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion
In The Putative Calcium Binding Site
pdb|1O88|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
30mm Ca2+
pdb|1O8D|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
5mm Ca2+
pdb|1O8E|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
1mm Ca2+
pdb|1O8F|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
30mm Ca2+
pdb|1O8G|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
5mm Ca2+
pdb|1O8H|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
0.3mm Ca2+ Added
pdb|1O8I|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
No Ca2+ Added
pdb|1O8J|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
30mm Ca2+
pdb|1O8K|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
20mm Ca2+
pdb|1O8L|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
5mm Ca2+
pdb|1O8M|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
No Ca2+ Added
pdb|1AIR|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi (Ec16) To A
Resolution Of 2.2 Angstroms With 128 Waters
pdb|2PEC|A Chain A, The Refined Three-Dimensional Structure Of Pectate Lyase C
From Erwinia Chrysanthemi At 2.2 Angstroms Resolution:
Implications For An Enzymatic Mechanism
Length = 353
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 17/113 (15%)
Query: 199 ASDGDGVSIFSSQHIWIDHCSL-------------SNCQDGLIDAIHGSTAITISNNYFT 245
A DGD + + S ++W+DH L + +D S +T+S NY
Sbjct: 127 AKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIH 186
Query: 246 HHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQGYFHVVNNDYT 298
KV L G S S D T N++ + + R+P R G H NN YT
Sbjct: 187 GVKKVGLDGSSSS---DTGRNITYHHNYYND-VNARLPLQRGGLVHAYNNLYT 235
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In
Complex With Pentagalacturonic Acid
Length = 353
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 17/113 (15%)
Query: 199 ASDGDGVSIFSSQHIWIDHCSL-------------SNCQDGLIDAIHGSTAITISNNYFT 245
A DGD + + S ++W+DH L + +D S +T+S NY
Sbjct: 127 AKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIH 186
Query: 246 HHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQGYFHVVNNDYT 298
KV L G S S D T N++ + + ++P R G H NN YT
Sbjct: 187 GVKKVGLDGSSSS---DTGRNITYHHNYYND-VNAKLPLQRGGLVHAYNNLYT 235
>pdb|1QCX|A Chain A, Pectin Lyase B
Length = 359
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 42/199 (21%)
Query: 138 LVMNSHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWW 197
+ +NS+K+I G+G I + A N+II I + D +P++ W
Sbjct: 104 ITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDI----------NPKYV-W- 151
Query: 198 DASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTA---ITISNNYFTHHDKVMLLG 254
GD +++ S +WIDH ++ + G + G++A +TIS + ++ G
Sbjct: 152 ---GGDAITVDDSDLVWIDH--VTTARIGRQHIVLGTSADNRVTISYS--------LIDG 198
Query: 255 HSD------------SYTQDKNMQATIAFNHFGEGLVQRMPRCR-QGYFHVVNNDYTEWQ 301
SD Y N T+ N+F L RMP+ + H VNN + +
Sbjct: 199 RSDYSATCNGHHYWGVYLDGSNDMVTLKGNYF-YNLSGRMPKVQGNTLLHAVNNLFHNFD 257
Query: 302 MYAIGGSAAPTINSQGNRF 320
+A + ++GN F
Sbjct: 258 GHAFEIGTGGYVLAEGNVF 276
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 19 LVSSSSIQDPELVAQDVHRSINASRRNLAYLSCGTGNPIDDCWRCDPNWEGNRQRLADCA 78
LV S P+ V + ++ + R++L+YL NP D W + + R LA C
Sbjct: 13 LVPRGSHMAPK-VGRLIYTAGGYFRQSLSYLE--AYNPSDGTWLRLADLQVPRSGLAGCV 69
Query: 79 IGFGRDAIGGRNGRIYVVTDSGDDNPTNP 107
+G A+GGRN TDS + NP
Sbjct: 70 VGGLLYAVGGRNNSPDGNTDSSALDCYNP 98
>pdb|1IDK|A Chain A, Pectin Lyase A
Length = 359
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 82/199 (41%), Gaps = 42/199 (21%)
Query: 138 LVMNSHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWW 197
+ + S+K++ G G+S I + A NIII I + D P++ W
Sbjct: 104 ITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDIN----------PKYV-W- 151
Query: 198 DASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTA---ITISNNYF---------- 244
GD +++ +WIDH ++ + G + G++A ++++NNY
Sbjct: 152 ---GGDAITLDDCDLVWIDH--VTTARIGRQHYVLGTSADNRVSLTNNYIDGVSDYSATC 206
Query: 245 --THHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQG-YFHVVNNDYTEWQ 301
H+ + L G +D T M+ ++ G R P+ + H VNN + +
Sbjct: 207 DGYHYWAIYLDGDADLVT----MKGNYIYHTSG-----RSPKVQDNTLLHAVNNYWYDIS 257
Query: 302 MYAIGGSAAPTINSQGNRF 320
+A + ++GN F
Sbjct: 258 GHAFEIGEGGYVLAEGNVF 276
>pdb|3I1I|A Chain A, X-Ray Crystal Structure Of Homoserine O-Acetyltransferase
From Bacillus Anthracis
pdb|3I1I|B Chain B, X-Ray Crystal Structure Of Homoserine O-Acetyltransferase
From Bacillus Anthracis
Length = 377
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
Query: 127 NRDMVIKLNQELVMNSHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCKKAGNGN 186
N ++K ++ ++ + +GR V T++ + +I H G
Sbjct: 2 NAXQIVK-KEKFILKEYTFENGRTIPVQXGYETYGTLNRERSNVILICHYFSATSHAAGK 60
Query: 187 IRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQ 224
E SGWWD G G +I ++Q+ I +L N Q
Sbjct: 61 YTAHDEESGWWDGLIGPGKAIDTNQYFVICTDNLCNVQ 98
>pdb|1IDJ|A Chain A, Pectin Lyase A
pdb|1IDJ|B Chain B, Pectin Lyase A
Length = 359
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 82/199 (41%), Gaps = 42/199 (21%)
Query: 138 LVMNSHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWW 197
+ + S+K++ G G+S I + A NIII I + D P++ W
Sbjct: 104 ITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDIN----------PKYV-W- 151
Query: 198 DASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTA---ITISNNYF---------- 244
GD +++ +WIDH ++ + G + G++A ++++NNY
Sbjct: 152 ---GGDAITLDDCDLVWIDH--VTTARIGRQHYVLGTSADNRVSLTNNYIDGVSDYSATC 206
Query: 245 --THHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQG-YFHVVNNDYTEWQ 301
H+ + L G +D T M+ ++ G R P+ + H VNN + +
Sbjct: 207 DGYHYWGIYLDGDADLVT----MKGNYIYHTSG-----RSPKVQDNTLLHCVNNYFYDIS 257
Query: 302 MYAIGGSAAPTINSQGNRF 320
+A + ++GN F
Sbjct: 258 GHAFEIGEGGYVLAEGNVF 276
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 31 VAQDVHRSINASRRNLAYLSCGTGNPIDDCWRCDPNWEGNRQRLADCAIGFGRDAIGGRN 90
V + ++ + R++L+YL NP D W + + R LA C +G A+GGRN
Sbjct: 23 VGRLIYTAGGYFRQSLSYLE--AYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRN 80
Query: 91 GRIYVVTDSGDDNPTNP 107
TDS + NP
Sbjct: 81 NSPDGNTDSSALDCYNP 97
>pdb|2G60|L Chain L, Structure Of Anti-Flag M2 Fab Domain
Length = 216
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 18/44 (40%)
Query: 284 RCRQGYFHVVNNDYTEWQMYAIGGSAAPTINSQGNRFFAPNERF 327
R Q H N Y EW + G S A I NRF +RF
Sbjct: 24 RSSQAIVHANGNTYLEWYLQKPGQSPALLIYKVANRFSGVPDRF 67
>pdb|3MCK|L Chain L, Crystal Structure Of Anti-Beta-Amyloid Antibody C705
pdb|3MCK|A Chain A, Crystal Structure Of Anti-Beta-Amyloid Antibody C705
Length = 219
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 17/44 (38%)
Query: 284 RCRQGYFHVVNNDYTEWQMYAIGGSAAPTINSQGNRFFAPNERF 327
R Q H N Y EW M G S I NRF +RF
Sbjct: 24 RSSQSLVHSNGNTYLEWYMQKPGQSPMLLIYKVSNRFSGVPDRF 67
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 31 VAQDVHRSINASRRNLAYLSCGTGNPIDDCWRCDPNWEGNRQRLADCAIGFGRDAIGGRN 90
V + ++ + R++L+YL NP + W + + R LA C +G A+GGRN
Sbjct: 17 VGRLIYTAGGYFRQSLSYLE--AYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRN 74
Query: 91 GRIYVVTDSGDDNPTNP 107
TDS + NP
Sbjct: 75 NSPDGNTDSSALDCYNP 91
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 43 RRNLAYLSCGTGNPIDDCWRCDPNWEGNRQRLADCAIGFGRDAIGGRNGRIYVVTDSGDD 102
R++L+YL NP + W + + R LA C +G A+GGRN TDS
Sbjct: 28 RQSLSYLE--AYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSAL 85
Query: 103 NPTNP 107
+ NP
Sbjct: 86 DCYNP 90
>pdb|1Q31|A Chain A, Crystal Structure Of The Tobacco Etch Virus Protease C151a
Mutant
pdb|1Q31|B Chain B, Crystal Structure Of The Tobacco Etch Virus Protease C151a
Mutant
Length = 242
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 220 LSNCQDGLIDAIHGSTAITISNNYFT 245
L + +DG I IH ++ T +NNYFT
Sbjct: 155 LVSTRDGFIVGIHSASNFTNTNNYFT 180
>pdb|1LVB|A Chain A, Catalytically Inactive Tobacco Etch Virus Protease
Complexed With Substrate
pdb|1LVB|B Chain B, Catalytically Inactive Tobacco Etch Virus Protease
Complexed With Substrate
Length = 243
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 220 LSNCQDGLIDAIHGSTAITISNNYFT 245
L + +DG I IH ++ T +NNYFT
Sbjct: 162 LVSTRDGFIVGIHSASNFTNTNNYFT 187
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 31 VAQDVHRSINASRRNLAYLSCGTGNPIDDCWRCDPNWEGNRQRLADCAIGFGRDAIGGRN 90
V + ++ + R++L+YL NP + W + + R LA C +G A+GGRN
Sbjct: 23 VGRLIYTAGGYFRQSLSYLE--AYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRN 80
Query: 91 GRIYVVTDSGDDNPTNP 107
TDS + NP
Sbjct: 81 NSPDGNTDSSALDCYNP 97
>pdb|1LVM|A Chain A, Catalytically Active Tobacco Etch Virus Protease Complexed
With Product
pdb|1LVM|B Chain B, Catalytically Active Tobacco Etch Virus Protease Complexed
With Product
Length = 229
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 220 LSNCQDGLIDAIHGSTAITISNNYFT 245
L + +DG I IH ++ T +NNYFT
Sbjct: 163 LVSTRDGFIVGIHSASNFTNTNNYFT 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,134,506
Number of Sequences: 62578
Number of extensions: 584574
Number of successful extensions: 1175
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1126
Number of HSP's gapped (non-prelim): 34
length of query: 403
length of database: 14,973,337
effective HSP length: 101
effective length of query: 302
effective length of database: 8,652,959
effective search space: 2613193618
effective search space used: 2613193618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)