Query 015623
Match_columns 403
No_of_seqs 309 out of 984
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:02:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 5.6E-58 1.2E-62 442.9 24.9 271 84-395 47-342 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 1E-51 2.2E-56 386.4 11.9 189 124-320 3-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 7.3E-48 1.6E-52 357.8 19.9 171 136-323 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 98.9 4.3E-07 9.4E-12 91.0 22.9 239 112-368 1-288 (314)
5 PF14592 Chondroitinas_B: Chon 98.4 4.7E-06 1E-10 86.3 14.2 183 111-299 6-234 (425)
6 PLN02218 polygalacturonase ADP 98.1 8E-05 1.7E-09 77.9 16.8 136 160-320 217-356 (431)
7 PLN03003 Probable polygalactur 98.1 8.8E-05 1.9E-09 77.9 16.3 98 200-301 186-287 (456)
8 PF13229 Beta_helix: Right han 97.9 0.00014 3.1E-09 62.7 11.2 133 160-324 2-138 (158)
9 PLN02793 Probable polygalactur 97.9 0.00055 1.2E-08 72.0 16.6 104 161-285 203-307 (443)
10 PLN02188 polygalacturonase/gly 97.8 0.0007 1.5E-08 70.4 16.5 105 160-285 180-285 (404)
11 PLN02155 polygalacturonase 97.8 0.00051 1.1E-08 71.2 15.2 123 160-303 170-297 (394)
12 PLN03010 polygalacturonase 97.8 0.0014 3.1E-08 68.2 17.9 114 200-321 205-322 (409)
13 TIGR03808 RR_plus_rpt_1 twin-a 97.7 0.0023 5E-08 67.0 17.7 115 111-245 56-176 (455)
14 PF00295 Glyco_hydro_28: Glyco 97.6 0.00064 1.4E-08 68.4 11.9 124 160-304 117-244 (326)
15 PLN02218 polygalacturonase ADP 97.5 0.005 1.1E-07 64.6 17.2 169 121-326 147-348 (431)
16 PF13229 Beta_helix: Right han 97.4 0.0018 3.9E-08 55.9 10.7 128 159-320 24-158 (158)
17 PLN02155 polygalacturonase 97.4 0.006 1.3E-07 63.3 15.9 141 122-299 107-268 (394)
18 PLN02480 Probable pectinestera 97.3 0.0056 1.2E-07 62.4 14.3 117 111-245 62-196 (343)
19 PF12708 Pectate_lyase_3: Pect 97.3 0.0058 1.3E-07 56.3 13.0 40 111-151 20-62 (225)
20 TIGR03805 beta_helix_1 paralle 97.3 0.0061 1.3E-07 61.3 14.0 155 141-305 62-247 (314)
21 PF01696 Adeno_E1B_55K: Adenov 97.2 0.036 7.9E-07 57.2 18.6 175 112-325 57-242 (386)
22 PLN02197 pectinesterase 97.1 0.08 1.7E-06 57.7 21.3 152 64-245 244-443 (588)
23 PF05048 NosD: Periplasmic cop 97.0 0.025 5.5E-07 53.6 15.2 63 203-275 80-142 (236)
24 PF05048 NosD: Periplasmic cop 97.0 0.011 2.4E-07 56.1 12.0 129 159-321 36-166 (236)
25 smart00656 Amb_all Amb_all dom 96.9 0.078 1.7E-06 49.6 17.0 134 142-299 45-188 (190)
26 TIGR03808 RR_plus_rpt_1 twin-a 96.9 0.036 7.9E-07 58.2 16.1 159 143-322 121-332 (455)
27 PLN02793 Probable polygalactur 96.9 0.021 4.5E-07 60.2 14.4 109 137-275 144-269 (443)
28 PF07602 DUF1565: Protein of u 96.7 0.077 1.7E-06 51.9 16.1 187 110-321 16-240 (246)
29 PF00295 Glyco_hydro_28: Glyco 96.7 0.015 3.1E-07 58.7 11.4 109 137-275 61-184 (326)
30 PLN03003 Probable polygalactur 96.7 0.019 4.1E-07 60.6 12.6 117 122-274 105-229 (456)
31 PLN03010 polygalacturonase 96.7 0.025 5.5E-07 59.0 13.0 139 160-326 159-313 (409)
32 PLN02176 putative pectinestera 96.5 0.056 1.2E-06 55.2 13.8 118 111-245 53-187 (340)
33 PLN02188 polygalacturonase/gly 96.3 0.045 9.8E-07 57.1 12.3 168 122-326 114-313 (404)
34 PLN02682 pectinesterase family 96.2 0.66 1.4E-05 48.0 19.7 171 111-298 84-303 (369)
35 PLN02416 probable pectinestera 95.9 0.087 1.9E-06 56.9 12.4 100 111-229 244-363 (541)
36 PLN02708 Probable pectinestera 95.9 0.12 2.6E-06 56.1 13.1 115 111-245 255-409 (553)
37 PLN02432 putative pectinestera 95.8 0.14 2.9E-06 51.4 12.2 113 111-246 25-153 (293)
38 PLN02773 pectinesterase 95.8 1.8 3.8E-05 44.0 20.2 167 111-298 19-238 (317)
39 PLN03043 Probable pectinestera 95.7 1 2.2E-05 48.8 19.3 166 111-298 237-460 (538)
40 PLN02665 pectinesterase family 95.7 1.2 2.6E-05 46.1 18.9 105 111-229 82-205 (366)
41 PLN02170 probable pectinestera 95.7 0.13 2.9E-06 55.2 12.4 100 111-229 239-359 (529)
42 PLN02217 probable pectinestera 95.5 1.2 2.7E-05 49.3 19.2 166 111-298 264-484 (670)
43 COG5434 PGU1 Endopygalactoruna 95.4 0.19 4.2E-06 54.2 12.4 102 160-285 263-375 (542)
44 PLN02995 Probable pectinestera 95.3 0.21 4.5E-06 54.1 12.4 112 111-245 237-371 (539)
45 PLN02201 probable pectinestera 95.3 0.23 4.9E-06 53.5 12.5 99 111-229 220-339 (520)
46 PLN02990 Probable pectinestera 95.2 1.7 3.8E-05 47.4 19.2 115 111-245 273-426 (572)
47 PLN02488 probable pectinestera 95.1 0.27 5.9E-06 52.7 12.5 98 111-228 211-329 (509)
48 PLN02301 pectinesterase/pectin 95.1 0.21 4.6E-06 54.1 11.8 116 111-245 250-402 (548)
49 PLN02916 pectinesterase family 95.1 0.28 6.1E-06 52.6 12.4 100 111-229 201-323 (502)
50 PLN02634 probable pectinestera 95.0 0.45 9.7E-06 49.0 13.4 118 111-245 70-213 (359)
51 PLN02933 Probable pectinestera 95.0 0.3 6.6E-06 52.6 12.7 99 111-229 232-351 (530)
52 PLN02304 probable pectinestera 95.0 0.52 1.1E-05 48.9 13.7 118 111-246 89-227 (379)
53 PLN02745 Putative pectinestera 94.9 0.33 7.1E-06 53.2 12.7 100 111-229 299-418 (596)
54 COG3420 NosD Nitrous oxidase a 94.8 0.57 1.2E-05 47.9 13.2 132 136-289 45-197 (408)
55 PLN02506 putative pectinestera 94.8 0.35 7.5E-06 52.3 12.3 100 111-229 246-365 (537)
56 PLN02314 pectinesterase 94.7 0.27 5.9E-06 53.7 11.4 115 111-245 292-444 (586)
57 PLN02313 Pectinesterase/pectin 94.7 0.33 7.2E-06 53.0 12.0 116 111-245 289-441 (587)
58 PLN02713 Probable pectinestera 94.7 0.41 8.8E-06 52.1 12.6 115 111-245 264-419 (566)
59 COG3420 NosD Nitrous oxidase a 94.6 0.8 1.7E-05 46.8 13.6 94 137-246 99-192 (408)
60 PLN02484 probable pectinestera 94.6 0.41 8.8E-06 52.3 12.4 115 111-245 286-439 (587)
61 PF00544 Pec_lyase_C: Pectate 94.5 0.28 6.2E-06 46.2 9.8 118 156-297 73-200 (200)
62 PRK10531 acyl-CoA thioesterase 94.3 3.3 7.2E-05 43.6 17.8 103 111-229 96-256 (422)
63 PF01095 Pectinesterase: Pecti 94.1 0.63 1.4E-05 46.6 11.6 114 111-246 14-147 (298)
64 PLN02468 putative pectinestera 94.0 0.57 1.2E-05 51.0 12.0 114 111-244 272-423 (565)
65 PLN02497 probable pectinestera 93.7 1.5 3.3E-05 44.7 13.7 119 111-245 46-181 (331)
66 PLN02671 pectinesterase 93.4 1.4 3.1E-05 45.4 13.0 117 111-245 73-217 (359)
67 COG5434 PGU1 Endopygalactoruna 91.6 0.84 1.8E-05 49.4 9.1 133 119-274 236-395 (542)
68 PF14592 Chondroitinas_B: Chon 88.5 1.7 3.8E-05 45.7 8.1 116 200-325 182-324 (425)
69 PF04431 Pec_lyase_N: Pectate 87.0 0.4 8.6E-06 36.6 1.7 17 24-40 24-40 (56)
70 PF08480 Disaggr_assoc: Disagg 86.7 7.8 0.00017 36.6 10.4 88 235-324 2-110 (198)
71 COG3866 PelB Pectate lyase [Ca 83.9 7 0.00015 39.6 9.2 119 201-322 115-250 (345)
72 PF12708 Pectate_lyase_3: Pect 78.5 31 0.00068 31.4 11.2 48 169-231 94-141 (225)
73 PF08480 Disaggr_assoc: Disagg 64.6 1.3E+02 0.0029 28.6 12.3 72 209-281 32-112 (198)
74 TIGR03804 para_beta_helix para 63.2 12 0.00027 26.1 3.7 40 204-245 1-40 (44)
75 PF07602 DUF1565: Protein of u 56.6 52 0.0011 32.4 8.0 89 141-252 96-193 (246)
76 PF12541 DUF3737: Protein of u 54.6 1.2E+02 0.0026 30.4 10.0 54 231-299 171-224 (277)
77 PF03211 Pectate_lyase: Pectat 52.2 36 0.00077 32.9 5.9 45 201-246 95-140 (215)
78 PF03211 Pectate_lyase: Pectat 49.4 2.1E+02 0.0046 27.7 10.7 50 200-251 73-123 (215)
79 PF10880 DUF2673: Protein of u 45.1 13 0.00027 28.6 1.3 33 1-34 1-33 (65)
80 PRK10123 wcaM putative colanic 40.4 54 0.0012 33.3 5.3 55 163-228 264-318 (464)
81 TIGR03804 para_beta_helix para 38.4 75 0.0016 22.0 4.5 42 160-223 1-42 (44)
82 PLN02698 Probable pectinestera 33.5 1.2E+02 0.0026 32.8 7.0 54 159-229 263-316 (497)
83 PF07822 Toxin_13: Neurotoxin 27.8 17 0.00036 27.0 -0.4 19 57-75 20-38 (55)
84 KOG1777 Putative Zn-finger pro 24.5 78 0.0017 34.0 3.5 54 125-181 458-515 (625)
85 PF12541 DUF3737: Protein of u 22.2 1.4E+02 0.0031 29.8 4.7 42 210-256 38-79 (277)
86 PF03718 Glyco_hydro_49: Glyco 20.8 3.3E+02 0.0072 30.0 7.4 70 200-274 371-443 (582)
87 TIGR02052 MerP mercuric transp 20.7 53 0.0011 24.8 1.2 20 1-20 1-20 (92)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-58 Score=442.93 Aligned_cols=271 Identities=32% Similarity=0.370 Sum_probs=221.3
Q ss_pred CCcCCCCCeEEEEcCCCCCCCCCCCchhHHHhhhcCCCeEEEEeeceEEEeC------ceeeecCCcEEEeeCCeEEEeC
Q 015623 84 DAIGGRNGRIYVVTDSGDDNPTNPKPGTLRHAVIQDEPLWIIFNRDMVIKLN------QELVMNSHKTIDGRGASVHIAD 157 (403)
Q Consensus 84 ~ttGG~gG~v~~VT~~~d~~~~~p~pGtLr~av~~~~P~~IvF~~~g~I~l~------~~L~i~snkTI~G~ga~i~I~~ 157 (403)
+||||.||++++|++.+| |...++..+|.++|+-+.|+|.+. .+|.+.|||||.|.|++.+|.
T Consensus 47 GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~- 115 (345)
T COG3866 47 GTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV- 115 (345)
T ss_pred CcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE-
Confidence 799999999999999988 889999999996666667899987 467789999999999999999
Q ss_pred CCeEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEe-eCCccEEEEeeeecC--------CCCCee
Q 015623 158 GPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSI-FSSQHIWIDHCSLSN--------CQDGLI 228 (403)
Q Consensus 158 G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi-~gs~nVWIDHcs~s~--------~~Dgli 228 (403)
|.+|.|+.+.|||||||+|++...++ ...|+|+| ..++|||||||+|+. ..||++
T Consensus 116 g~gl~i~~a~NVIirNltf~~~~~~d----------------~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~ 179 (345)
T COG3866 116 GGGLKIRDAGNVIIRNLTFEGFYQGD----------------PNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLV 179 (345)
T ss_pred eceEEEEeCCcEEEEeeEEEeeccCC----------------CCCCcEEeccCCeEEEEEeeEeccccccccccCCCccE
Confidence 55799999999999999999875321 12699999 679999999999999 789999
Q ss_pred eeeeCCceEEEEcceeccCCeeeecCCCCCc-cCCcceeEEEEeeEecCCCcCCCcccCCCeEEEEcceeeCCcc--eee
Q 015623 229 DAIHGSTAITISNNYFTHHDKVMLLGHSDSY-TQDKNMQATIAFNHFGEGLVQRMPRCRQGYFHVVNNDYTEWQM--YAI 305 (403)
Q Consensus 229 Dv~~gs~~VTISnn~f~~H~k~~LiG~sd~~-~~d~~~~VT~~hN~f~~n~~~R~Pr~R~G~~Hv~NN~y~~~~~--yai 305 (403)
||++++++||||||+|++|+|.+|+|.+|+. .+|...+||+||||| +|+.||+||+|||.+||+||||..... ||+
T Consensus 180 Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~ 258 (345)
T COG3866 180 DIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAI 258 (345)
T ss_pred EeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceEE
Confidence 9999999999999999999999999999985 456789999999999 799999999999999999999996554 555
Q ss_pred ecCCCceEEEEccEEeCCCcccccceeeccCCCcccccCceEeecCceEEeceEEecCCCCCC----CC--CCCCCcccc
Q 015623 306 GGSAAPTINSQGNRFFAPNERFRKEVTKHEDAPESEWRNWNWRSEGDLMLNGAYFRQSGAGAS----ST--YARASSLNA 379 (403)
Q Consensus 306 gg~~~~~i~~egN~F~~~~~~~~k~vt~r~~~~~~~~~~~~w~s~Gd~~~nGa~f~~sG~~~~----~~--~~~~~~~~~ 379 (403)
+-...++|++|+|||+....+..-.-+++. +..|.- -+|++|..++.... .. ++..|+|++
T Consensus 259 ~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~--------~GY~~~-----d~gsy~~~s~~~~~~~~G~~w~ps~~Y~Ytv 325 (345)
T COG3866 259 TIGTSAKIYVENNYFENGSEGLGFLDTKGT--------SGYANQ-----DSGSYLNSSKSMSVRAGGVTWNPSSYYSYTV 325 (345)
T ss_pred eeccceEEEEecceeccCCCCceeeecCCc--------cceEEe-----ccCceecccCCcccccCCccCCCCCCccccc
Confidence 544449999999999997655221112111 122321 23566666654432 22 445799999
Q ss_pred CCCCCcccc-cccccCC
Q 015623 380 RPSTLVGPM-TMRAGAL 395 (403)
Q Consensus 380 ~~~s~v~~l-t~~AG~~ 395 (403)
+|++.|++. |++||+-
T Consensus 326 d~~~dVks~Vt~yAGaG 342 (345)
T COG3866 326 DPPEDVKSFVTNYAGAG 342 (345)
T ss_pred CChHHhhhhhhccccce
Confidence 999999977 8999964
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=1e-51 Score=386.35 Aligned_cols=189 Identities=41% Similarity=0.656 Sum_probs=158.7
Q ss_pred EEEeeceEEEeCceeeecCCcEEEeeCCeEEEeCCCeEEEe-ccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCC
Q 015623 124 IIFNRDMVIKLNQELVMNSHKTIDGRGASVHIADGPCITIH-FATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDG 202 (403)
Q Consensus 124 IvF~~~g~I~l~~~L~i~snkTI~G~ga~i~I~~G~gi~i~-~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~ 202 (403)
+||+++|+|+++.+|.|.|||||+|+|++++|. +.++.+. +++|||||||+|+++. ++..++..+.....++
T Consensus 3 ~ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~-~~G~~i~~~~~NVIirNl~~~~~~------~~~~~~~~~~~~~~~~ 75 (200)
T PF00544_consen 3 LIIKVSGTIDLKSPISVGSNKTIIGIGAGATII-GGGLRIIKGASNVIIRNLRFRNVP------VDPGPDWSGDGDSSDG 75 (200)
T ss_dssp EEEEEHHCCHHHCEEEEESSEEEEEETTTTEEE-SSEEEEEESCEEEEEES-EEECEE------EECSTEEETTEEECS-
T ss_pred EEEEEEeEEccCCeEEECCCcEEEEccCCeEEE-CceEEEecCCCeEEEECCEEEecc------ccCCcccCCCccccCC
Confidence 455668899999999999999999999999998 5678886 8999999999999841 0111111112223589
Q ss_pred CcEEeeCCccEEEEeeeecCC--------CCCeeeeeeCCceEEEEcceeccCCeeeecCCCCCccCCcceeEEEEeeEe
Q 015623 203 DGVSIFSSQHIWIDHCSLSNC--------QDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHF 274 (403)
Q Consensus 203 DaIsi~gs~nVWIDHcs~s~~--------~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~~hN~f 274 (403)
|+|+|++++|||||||+|+|+ .||++|++.++++||||||+|++|+|++|+|++|....|..++||||||||
T Consensus 76 Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f 155 (200)
T PF00544_consen 76 DAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYF 155 (200)
T ss_dssp -SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EE
T ss_pred CeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEE
Confidence 999999999999999999999 999999999999999999999999999999999888777779999999999
Q ss_pred cCCCcCCCcccCCCeEEEEcceeeCCcceeeecCCCceEEEEccEE
Q 015623 275 GEGLVQRMPRCRQGYFHVVNNDYTEWQMYAIGGSAAPTINSQGNRF 320 (403)
Q Consensus 275 ~~n~~~R~Pr~R~G~~Hv~NN~y~~~~~yaigg~~~~~i~~egN~F 320 (403)
.++.+|+||+|+|++|+|||||+++..|+++.++++++++|+|||
T Consensus 156 -~~~~~R~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 156 -ANTNSRNPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp -EEEEE-TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred -CchhhCCCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 589999999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=7.3e-48 Score=357.77 Aligned_cols=171 Identities=58% Similarity=0.887 Sum_probs=157.9
Q ss_pred ceeeecCCcEEEeeCCeEEEeCCCeEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEE
Q 015623 136 QELVMNSHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWI 215 (403)
Q Consensus 136 ~~L~i~snkTI~G~ga~i~I~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWI 215 (403)
.+|.|.|||||+|+|++++|. |.+|+++.++|||||||+|++..+. .+ .++|+|++++++||||
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~-g~gl~i~~~~NVIirnl~i~~~~~~-----------~~----~~~D~i~~~~~~~VwI 73 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKPV-----------YG----SDGDAISIDGSSNVWI 73 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEE-eeEEEEEecceEEEeCCEEECCccC-----------CC----CCCCEEEEeCCCeEEE
Confidence 578899999999999999998 6689998899999999999976432 11 4789999999999999
Q ss_pred EeeeecCC---------CCCeeeeeeCCceEEEEcceeccCCeeeecCCCCCccCCcceeEEEEeeEecCCCcCCCcccC
Q 015623 216 DHCSLSNC---------QDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCR 286 (403)
Q Consensus 216 DHcs~s~~---------~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~~hN~f~~n~~~R~Pr~R 286 (403)
|||+|+|+ .|+++|++.++++||||||+|.+|+|++|+|++|+...+..++||+|||||. ++.+|+||+|
T Consensus 74 DHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~-~~~~R~P~~r 152 (190)
T smart00656 74 DHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVR 152 (190)
T ss_pred EccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEc-CcccCCCccc
Confidence 99999998 8999999999999999999999999999999998876666899999999995 7999999999
Q ss_pred CCeEEEEcceeeCCcceeeecCCCceEEEEccEEeCC
Q 015623 287 QGYFHVVNNDYTEWQMYAIGGSAAPTINSQGNRFFAP 323 (403)
Q Consensus 287 ~G~~Hv~NN~y~~~~~yaigg~~~~~i~~egN~F~~~ 323 (403)
+|++|++||||++|..|+++.++++++++|+|||+..
T Consensus 153 ~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 153 FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 9999999999999999999999999999999999875
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.89 E-value=4.3e-07 Score=90.95 Aligned_cols=239 Identities=15% Similarity=0.224 Sum_probs=131.4
Q ss_pred HHHhhhcCCCe-EEEEeeceEEEeCceeeec-CCcEEEeeCCe-EEEeC------CCeEEEeccccEEEEeEEEeeeecC
Q 015623 112 LRHAVIQDEPL-WIIFNRDMVIKLNQELVMN-SHKTIDGRGAS-VHIAD------GPCITIHFATNIIIHGIHIHDCKKA 182 (403)
Q Consensus 112 Lr~av~~~~P~-~IvF~~~g~I~l~~~L~i~-snkTI~G~ga~-i~I~~------G~gi~i~~a~NVIIrnL~i~~~~~~ 182 (403)
|++|+.+-.|- +|++. .|+.++++.|.|. +++||.|.+.. ..|.. +.+|.+ .++||.|++|+|++...
T Consensus 1 iQ~Ai~~A~~GDtI~l~-~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~~- 77 (314)
T TIGR03805 1 LQEALIAAQPGDTIVLP-EGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTKG- 77 (314)
T ss_pred CHhHHhhCCCCCEEEEC-CCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCCC-
Confidence 45677776665 56665 5788887888886 89999998764 33321 334655 57888888888875311
Q ss_pred CCCc-ccCCCCC------CCCC----CCCCCCcEEeeCCccEEEEeeeecCCCCCeeeeeeCCceEEEEcceeccCCeee
Q 015623 183 GNGN-IRDSPEH------SGWW----DASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTHHDKVM 251 (403)
Q Consensus 183 ~~~~-i~~~~~~------~g~~----~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~ 251 (403)
.+. ++.+..- ..|. .....+||.+..++++-|.+|.++...|--|-+ ..|++++|++|.+.+-..+.
T Consensus 78 -~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv-~~s~~~~v~nN~~~~n~~GI 155 (314)
T TIGR03805 78 -DGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYV-GQSQNIVVRNNVAEENVAGI 155 (314)
T ss_pred -CeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEE-CCCCCeEEECCEEccCcceE
Confidence 111 1100000 0000 012457777777888888888887776633333 45778888888776544444
Q ss_pred ecCCCCCccCCcceeEEEEeeEecCCCcCC----Cccc---CCCeEEEEcceeeCCcc----------------eeeecC
Q 015623 252 LLGHSDSYTQDKNMQATIAFNHFGEGLVQR----MPRC---RQGYFHVVNNDYTEWQM----------------YAIGGS 308 (403)
Q Consensus 252 LiG~sd~~~~d~~~~VT~~hN~f~~n~~~R----~Pr~---R~G~~Hv~NN~y~~~~~----------------yaigg~ 308 (403)
.+-.+. ++.+.+|.+..|...= .|.. -...+.|.||.+.+... .++-..
T Consensus 156 ~i~~S~--------~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~ 227 (314)
T TIGR03805 156 EIENSQ--------NADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVM 227 (314)
T ss_pred EEEecC--------CcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEE
Confidence 443332 3556666664332110 1111 11357778887753211 111122
Q ss_pred CCceEEEEccEEeCCCcccccceeeccC------CCcccccCceEeecCceEEeceEEecCCCCCC
Q 015623 309 AAPTINSQGNRFFAPNERFRKEVTKHED------APESEWRNWNWRSEGDLMLNGAYFRQSGAGAS 368 (403)
Q Consensus 309 ~~~~i~~egN~F~~~~~~~~k~vt~r~~------~~~~~~~~~~w~s~Gd~~~nGa~f~~sG~~~~ 368 (403)
....+.+++|.|..-.....- ++.... ..+..|..+ ..++.+-+|.|...|..+.
T Consensus 228 ~~~~v~I~~N~i~~n~~~~i~-~~~~~~~~~~~~~~~~~~~~~----~~~v~i~~N~~~~~g~~p~ 288 (314)
T TIGR03805 228 ANRDVEIFGNVISNNDTANVL-ISSYHSTGLPDQPPDDGFDPY----PRNISIHDNTFSDGGTNPD 288 (314)
T ss_pred cccceEEECCEEeCCcceeEE-EEecccccCCCCCcCCCccCC----CcceEEEccEeecCCCCCC
Confidence 235678899999876654221 121111 112223221 3677788899988886543
No 5
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.40 E-value=4.7e-06 Score=86.32 Aligned_cols=183 Identities=17% Similarity=0.232 Sum_probs=83.5
Q ss_pred hHHHhhhcCCCe-EEEEeeceEEEeCceeee------cCCcEEEeeCC-eEEEeCCCeEEEeccccEEEEeEEEeeeecC
Q 015623 111 TLRHAVIQDEPL-WIIFNRDMVIKLNQELVM------NSHKTIDGRGA-SVHIADGPCITIHFATNIIIHGIHIHDCKKA 182 (403)
Q Consensus 111 tLr~av~~~~P~-~IvF~~~g~I~l~~~L~i------~snkTI~G~ga-~i~I~~G~gi~i~~a~NVIIrnL~i~~~~~~ 182 (403)
+|..||.+-.|- +|++. +|+-+ ..+|.+ ...+||..+.+ .+.|.|...|+| ..+.++|.+|.|+++.+.
T Consensus 6 ~lq~Ai~~a~pGD~I~L~-~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i-~G~yl~v~GL~F~ng~~~ 82 (425)
T PF14592_consen 6 ELQSAIDNAKPGDTIVLA-DGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRI-SGSYLVVSGLKFKNGYTP 82 (425)
T ss_dssp HHHHHHHH--TT-EEEE--SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE---
T ss_pred HHHHHHHhCCCCCEEEEC-Cceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEE-EeeeEEEeCeEEecCCCC
Confidence 499999876654 44443 56655 334554 45689998865 688886678888 589999999999987643
Q ss_pred CCCcccCCCC--C-CC------------CCC-CCCCCcEEe----eCCccEEEEeeeecCC-CCC-eeeee-------eC
Q 015623 183 GNGNIRDSPE--H-SG------------WWD-ASDGDGVSI----FSSQHIWIDHCSLSNC-QDG-LIDAI-------HG 233 (403)
Q Consensus 183 ~~~~i~~~~~--~-~g------------~~~-~~~~DaIsi----~gs~nVWIDHcs~s~~-~Dg-liDv~-------~g 233 (403)
....|....+ . +. ... ..+.+...+ -.++|--||||+|..- ..| +|-+. .-
T Consensus 83 ~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~ 162 (425)
T PF14592_consen 83 TGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSI 162 (425)
T ss_dssp TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS---
T ss_pred CCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCcccc
Confidence 2222211110 0 00 000 012223344 2367777899999973 222 22222 12
Q ss_pred CceEEEEcceecc-------CCeeeecCCCCCccCCcceeEEEEeeEecCCCcCCCccc--CCCeEEEEcceeeC
Q 015623 234 STAITISNNYFTH-------HDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRC--RQGYFHVVNNDYTE 299 (403)
Q Consensus 234 s~~VTISnn~f~~-------H~k~~LiG~sd~~~~d~~~~VT~~hN~f~~n~~~R~Pr~--R~G~~Hv~NN~y~~ 299 (403)
..+-+|.+|+|.+ ...++.+|.|...-. .-+.++.+|+| ++|.+-.--+ +-+.--+.||.|++
T Consensus 163 ~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~--~s~t~Ve~NlF-e~cdGE~EIISvKS~~N~ir~Ntf~e 234 (425)
T PF14592_consen 163 ANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMS--DSNTTVENNLF-ERCDGEVEIISVKSSDNTIRNNTFRE 234 (425)
T ss_dssp ----EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EE-EEE-SSSEEEEEESBT-EEES-EEES
T ss_pred ccCceEEeccccccCCCCCCCceeEEEeccccccc--ccceeeecchh-hhcCCceeEEEeecCCceEeccEEEe
Confidence 3577999999983 557888887654321 23678899999 6777553322 23444555666554
No 6
>PLN02218 polygalacturonase ADPG
Probab=98.15 E-value=8e-05 Score=77.86 Aligned_cols=136 Identities=18% Similarity=0.221 Sum_probs=91.6
Q ss_pred eEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeeeeeeCCceEEE
Q 015623 160 CITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITI 239 (403)
Q Consensus 160 gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTI 239 (403)
.+.+..++||.|+||+|.. |. + ....|||.+.+++||.|.+|.++.+ |.+|.++.++++|+|
T Consensus 217 ~i~~~~~~nV~i~~v~I~a--~~------~---------spNTDGIdi~ss~nV~I~n~~I~tG-DDcIaIksgs~nI~I 278 (431)
T PLN02218 217 QISIEKCSNVQVSNVVVTA--PA------D---------SPNTDGIHITNTQNIRVSNSIIGTG-DDCISIESGSQNVQI 278 (431)
T ss_pred EEEEEceeeEEEEEEEEeC--CC------C---------CCCCCcEeecccceEEEEccEEecC-CceEEecCCCceEEE
Confidence 3445678999999999874 21 0 1357999999999999999999876 667899999999999
Q ss_pred EcceeccCCeeeecCCCCCcc-CCcceeEEEEeeEecCCCcCCCcccC---CCeEEEEcceeeCCcceeeecCCCceEEE
Q 015623 240 SNNYFTHHDKVMLLGHSDSYT-QDKNMQATIAFNHFGEGLVQRMPRCR---QGYFHVVNNDYTEWQMYAIGGSAAPTINS 315 (403)
Q Consensus 240 Snn~f~~H~k~~LiG~sd~~~-~d~~~~VT~~hN~f~~n~~~R~Pr~R---~G~~Hv~NN~y~~~~~yaigg~~~~~i~~ 315 (403)
+||.+.. ..+.-+|+--.+. .+..-.|++.++.| .+. .+.=|++ .|...+-|=.|.+..|..+. .| |.+
T Consensus 279 ~n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~-~~t-~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~---~p-I~I 351 (431)
T PLN02218 279 NDITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKL-SGT-DNGVRIKTYQGGSGTASNIIFQNIQMENVK---NP-III 351 (431)
T ss_pred EeEEEEC-CCCEEECcCCCCCCCceEEEEEEEccEE-ecC-CcceEEeecCCCCeEEEEEEEEeEEEEccc---cc-EEE
Confidence 9999963 3356688754332 23456889988888 353 3444443 23344445555665554432 23 555
Q ss_pred EccEE
Q 015623 316 QGNRF 320 (403)
Q Consensus 316 egN~F 320 (403)
.-+|.
T Consensus 352 dq~Y~ 356 (431)
T PLN02218 352 DQDYC 356 (431)
T ss_pred Eeecc
Confidence 55553
No 7
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.12 E-value=8.8e-05 Score=77.94 Aligned_cols=98 Identities=16% Similarity=0.184 Sum_probs=68.1
Q ss_pred CCCCcEEeeCCccEEEEeeeecCCCCCeeeeeeCCceEEEEcceeccCCeeeecCCCCCcc-CCcceeEEEEeeEecCCC
Q 015623 200 SDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYT-QDKNMQATIAFNHFGEGL 278 (403)
Q Consensus 200 ~~~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~-~d~~~~VT~~hN~f~~n~ 278 (403)
...|||.+..++||+|.+|.++.+ |.+|.++.++++|+|+|+.+.. ..+.-+|+--++. .+..-.|++.++.|. +.
T Consensus 186 pNTDGIDi~~S~nV~I~n~~I~tG-DDCIaiksgs~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~~-~T 262 (456)
T PLN03003 186 PNTDGIDVGASSNVVIQDCIIATG-DDCIAINSGTSNIHISGIDCGP-GHGISIGSLGKDGETATVENVCVQNCNFR-GT 262 (456)
T ss_pred CCCCcEeecCcceEEEEecEEecC-CCeEEeCCCCccEEEEeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEEE-CC
Confidence 367999999999999999999866 5566889999999999999864 2356688654332 234568999999994 53
Q ss_pred cCCCcccC---CCeEEEEcceeeCCc
Q 015623 279 VQRMPRCR---QGYFHVVNNDYTEWQ 301 (403)
Q Consensus 279 ~~R~Pr~R---~G~~Hv~NN~y~~~~ 301 (403)
.+.=|++ .|...+-|=.|.+..
T Consensus 263 -~nGvRIKT~~Gg~G~v~nItf~nI~ 287 (456)
T PLN03003 263 -MNGARIKTWQGGSGYARMITFNGIT 287 (456)
T ss_pred -CcEEEEEEeCCCCeEEEEEEEEeEE
Confidence 3444553 232334444444443
No 8
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.90 E-value=0.00014 Score=62.71 Aligned_cols=133 Identities=23% Similarity=0.281 Sum_probs=83.1
Q ss_pred eEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeeeeeeCCceEEE
Q 015623 160 CITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITI 239 (403)
Q Consensus 160 gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTI 239 (403)
||.+....++.|++.+|++. ..+||.+.+...+.|+.|+|.+...|+ .+ .+..+++|
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~---------------------~~~gi~~~~~~~~~i~n~~i~~~~~gi-~~-~~~~~~~i 58 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN---------------------GGDGIHVSGSSNITIENCTISNGGYGI-YV-SGGSNVTI 58 (158)
T ss_dssp CEEETTCEC-EEESEEEESS---------------------SSECEEE-SSCESEEES-EEESSTTSE-EE-ECCES-EE
T ss_pred EEEEECCcCeEEeeeEEEeC---------------------CCeEEEEEcCCCeEEECeEEECCCcEE-EE-ecCCCeEE
Confidence 47787888999999999953 478999999999999999999955555 54 45689999
Q ss_pred EcceeccCCeeeecCCCCCccCCcceeEEEEeeEecCCCcCCCcccC--CCeEEEEcceeeCCcceeeecC--CCceEEE
Q 015623 240 SNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCR--QGYFHVVNNDYTEWQMYAIGGS--AAPTINS 315 (403)
Q Consensus 240 Snn~f~~H~k~~LiG~sd~~~~d~~~~VT~~hN~f~~n~~~R~Pr~R--~G~~Hv~NN~y~~~~~yaigg~--~~~~i~~ 315 (403)
++|.|.+......+-.+. .+++.+|.|. ++..-.=.+. ...+.+.||.+.+-..+++... ..+.+.+
T Consensus 59 ~~~~~~~~~~~i~~~~~~--------~~~i~~~~i~-~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i 129 (158)
T PF13229_consen 59 SNNTISDNGSGIYVSGSS--------NITIENNRIE-NNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTI 129 (158)
T ss_dssp ES-EEES-SEEEECCS-C--------S-EEES-EEE-CSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EE
T ss_pred ECeEEEEccceEEEEecC--------CceecCcEEE-cCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEE
Confidence 999999877444443222 5788888884 4332122222 2358889999887654444322 2458889
Q ss_pred EccEEeCCC
Q 015623 316 QGNRFFAPN 324 (403)
Q Consensus 316 egN~F~~~~ 324 (403)
++|.|....
T Consensus 130 ~~n~i~~~~ 138 (158)
T PF13229_consen 130 ENNTISNNG 138 (158)
T ss_dssp ECEEEECES
T ss_pred EEEEEEeCc
Confidence 999998755
No 9
>PLN02793 Probable polygalacturonase
Probab=97.86 E-value=0.00055 Score=71.95 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=75.0
Q ss_pred EEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeeeeeeCCceEEEE
Q 015623 161 ITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITIS 240 (403)
Q Consensus 161 i~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTIS 240 (403)
|.+..++||.|++|+|.... .....|||.+..++||+|.+|.+..+ |.+|.++.++++|+|+
T Consensus 203 i~~~~~~nv~i~~l~I~~p~-----------------~spNTDGIdi~~s~nV~I~n~~I~~g-DDcIaik~~s~nI~I~ 264 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPA-----------------TSPNTDGIHISASRGVVIKDSIVRTG-DDCISIVGNSSRIKIR 264 (443)
T ss_pred EEEEccCcEEEEEEEEECCC-----------------CCCCCCcEeeeccceEEEEeCEEeCC-CCeEEecCCcCCEEEE
Confidence 44567889999999987421 01367999999999999999999854 6677888899999999
Q ss_pred cceeccCCeeeecCCCCCc-cCCcceeEEEEeeEecCCCcCCCccc
Q 015623 241 NNYFTHHDKVMLLGHSDSY-TQDKNMQATIAFNHFGEGLVQRMPRC 285 (403)
Q Consensus 241 nn~f~~H~k~~LiG~sd~~-~~d~~~~VT~~hN~f~~n~~~R~Pr~ 285 (403)
|+.+.. ..+.-+|+--.+ .......|++.++.|. +. .+.=|+
T Consensus 265 n~~c~~-GhGisIGSlg~~~~~~~V~nV~v~n~~~~-~t-~~GirI 307 (443)
T PLN02793 265 NIACGP-GHGISIGSLGKSNSWSEVRDITVDGAFLS-NT-DNGVRI 307 (443)
T ss_pred EeEEeC-CccEEEecccCcCCCCcEEEEEEEccEEe-CC-CceEEE
Confidence 999864 234668874322 2223567899998884 43 344444
No 10
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.82 E-value=0.0007 Score=70.38 Aligned_cols=105 Identities=19% Similarity=0.248 Sum_probs=76.7
Q ss_pred eEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeeeeeeCCceEEE
Q 015623 160 CITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITI 239 (403)
Q Consensus 160 gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTI 239 (403)
.|.+..++||.|++|+|... . .....|||-+..++||+|.+|.+..+-| +|.++.++++|+|
T Consensus 180 ~i~~~~~~~v~i~~v~I~~~--~---------------~spNtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI~I 241 (404)
T PLN02188 180 HIALVECRNFKGSGLKISAP--S---------------DSPNTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQVTI 241 (404)
T ss_pred EEEEEccccEEEEEEEEeCC--C---------------CCCCCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccEEE
Confidence 45566899999999999742 1 0135799999999999999999987766 7788889999999
Q ss_pred EcceeccCCeeeecCCCCCc-cCCcceeEEEEeeEecCCCcCCCccc
Q 015623 240 SNNYFTHHDKVMLLGHSDSY-TQDKNMQATIAFNHFGEGLVQRMPRC 285 (403)
Q Consensus 240 Snn~f~~H~k~~LiG~sd~~-~~d~~~~VT~~hN~f~~n~~~R~Pr~ 285 (403)
+|+.+.. ..++-+|+--.+ .....-.|++.++.|. +. .+.=|+
T Consensus 242 ~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~~-~t-~~Giri 285 (404)
T PLN02188 242 TRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTFT-GT-TNGIRI 285 (404)
T ss_pred EEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEEE-CC-CcEEEE
Confidence 9999864 335667873322 1223568899999984 43 344444
No 11
>PLN02155 polygalacturonase
Probab=97.81 E-value=0.00051 Score=71.15 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=85.5
Q ss_pred eEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeeeeeeCCceEEE
Q 015623 160 CITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITI 239 (403)
Q Consensus 160 gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTI 239 (403)
.+.+..++||.|+||+|... . .....|||.+..++||+|.+|.+..+-| +|.++.++++|+|
T Consensus 170 ~i~~~~~~nv~i~~v~I~~p--~---------------~~~NtDGidi~~s~nV~I~~~~I~~gDD-cIaik~gs~nI~I 231 (394)
T PLN02155 170 HMTLNGCTNVVVRNVKLVAP--G---------------NSPNTDGFHVQFSTGVTFTGSTVQTGDD-CVAIGPGTRNFLI 231 (394)
T ss_pred EEEEECeeeEEEEEEEEECC--C---------------CCCCCCccccccceeEEEEeeEEecCCc-eEEcCCCCceEEE
Confidence 45556889999999999852 1 0135799999999999999999987766 6688889999999
Q ss_pred EcceeccCCeeeecCCCCCc-cCCcceeEEEEeeEecCCCcCCCcccC----CCeEEEEcceeeCCcce
Q 015623 240 SNNYFTHHDKVMLLGHSDSY-TQDKNMQATIAFNHFGEGLVQRMPRCR----QGYFHVVNNDYTEWQMY 303 (403)
Q Consensus 240 Snn~f~~H~k~~LiG~sd~~-~~d~~~~VT~~hN~f~~n~~~R~Pr~R----~G~~Hv~NN~y~~~~~y 303 (403)
++|.+.. ..++-+|+--.+ +.....+|++.++.|. +. .+.=|++ .+...|-|=.|.+..|-
T Consensus 232 ~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~~-~t-~~GirIKT~~~~~gG~v~nI~f~ni~m~ 297 (394)
T PLN02155 232 TKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVFT-GS-QNGVRIKSWARPSTGFVRNVFFQDLVMK 297 (394)
T ss_pred EEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEEe-CC-CcEEEEEEecCCCCEEEEEEEEEeEEEc
Confidence 9999974 235678885332 2334568899999994 43 3444442 12234445455665443
No 12
>PLN03010 polygalacturonase
Probab=97.78 E-value=0.0014 Score=68.21 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=72.7
Q ss_pred CCCCcEEeeCCccEEEEeeeecCCCCCeeeeeeCCceEEEEcceeccCCeeeecCCCCCc-cCCcceeEEEEeeEecCCC
Q 015623 200 SDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSY-TQDKNMQATIAFNHFGEGL 278 (403)
Q Consensus 200 ~~~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~-~~d~~~~VT~~hN~f~~n~ 278 (403)
...|||-+..++||+|.+|.+..+ |.+|.++.++++++|.++.... ..+.-+|+--.. ..+..-.|++.++.|. +.
T Consensus 205 ~NTDGiDi~~s~nV~I~n~~I~~g-DDcIaiksgs~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~-~t 281 (409)
T PLN03010 205 PNTDGIDISYSTNINIFDSTIQTG-DDCIAINSGSSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFN-QT 281 (409)
T ss_pred CCCCceeeeccceEEEEeeEEecC-CCeEEecCCCCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEe-CC
Confidence 357999999999999999998877 7777988888888888776652 224557764332 2233568899888884 42
Q ss_pred cCCCcccC---CCeEEEEcceeeCCcceeeecCCCceEEEEccEEe
Q 015623 279 VQRMPRCR---QGYFHVVNNDYTEWQMYAIGGSAAPTINSQGNRFF 321 (403)
Q Consensus 279 ~~R~Pr~R---~G~~Hv~NN~y~~~~~yaigg~~~~~i~~egN~F~ 321 (403)
.+.=|++ .|...+-|=.|.+..|... ..| |.+.-+|..
T Consensus 282 -~~GirIKt~~G~~G~v~nItf~nI~m~~v---~~p-I~I~q~Y~~ 322 (409)
T PLN03010 282 -TNGARIKTWQGGQGYARNISFENITLINT---KNP-IIIDQQYID 322 (409)
T ss_pred -CcceEEEEecCCCEEEEEeEEEeEEEecC---Ccc-EEEEeeccC
Confidence 3444443 2334455555666544332 223 555555543
No 13
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.68 E-value=0.0023 Score=66.98 Aligned_cols=115 Identities=16% Similarity=0.162 Sum_probs=73.1
Q ss_pred hHHHhhhcCC-C-eEEEEeeceEEEeCceeeecCCcEEEeeCCeE--EEeCCCeEE-EeccccEEEEeEEEeeeecCCCC
Q 015623 111 TLRHAVIQDE-P-LWIIFNRDMVIKLNQELVMNSHKTIDGRGASV--HIADGPCIT-IHFATNIIIHGIHIHDCKKAGNG 185 (403)
Q Consensus 111 tLr~av~~~~-P-~~IvF~~~g~I~l~~~L~i~snkTI~G~ga~i--~I~~G~gi~-i~~a~NVIIrnL~i~~~~~~~~~ 185 (403)
.|+.|+.+-. | -.|++.. |+. +..+|.+.+++||.|+.... .|.++..+. -..++||-|++|+|++. +
T Consensus 56 ALQaAIdaAa~gG~tV~Lp~-G~Y-~~G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGs--G--- 128 (455)
T TIGR03808 56 ALQRAIDEAARAQTPLALPP-GVY-RTGPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDGG--G--- 128 (455)
T ss_pred HHHHHHHHhhcCCCEEEECC-Cce-ecccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEeC--C---
Confidence 4888876522 2 3466654 332 24778899999999994322 355443333 24899999999999863 1
Q ss_pred cccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCC-CCeeeeeeCCceEEEEcceec
Q 015623 186 NIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQ-DGLIDAIHGSTAITISNNYFT 245 (403)
Q Consensus 186 ~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~-DgliDv~~gs~~VTISnn~f~ 245 (403)
.......-+|.+.+++++-|.+|.|.... .|. .+ +++. ..|++|.+.
T Consensus 129 ----------~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI-~L-~~~~-~~I~~N~I~ 176 (455)
T TIGR03808 129 ----------IPLPQRRGLIHCQGGRDVRITDCEITGSGGNGI-WL-ETVS-GDISGNTIT 176 (455)
T ss_pred ----------CcccCCCCEEEEccCCceEEEeeEEEcCCcceE-EE-EcCc-ceEecceEe
Confidence 11113445888989999999999999884 665 32 3344 444444443
No 14
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.60 E-value=0.00064 Score=68.44 Aligned_cols=124 Identities=23% Similarity=0.241 Sum_probs=82.4
Q ss_pred eEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeeeeeeCCceEEE
Q 015623 160 CITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITI 239 (403)
Q Consensus 160 gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTI 239 (403)
.+.+..++||.|++|+|+.... ....|||-+.+++||.|++|.+..+ |.+|.++.++.+|+|
T Consensus 117 ~~~~~~~~nv~i~~i~I~~~~~-----------------~~NtDGid~~~s~nv~I~n~~i~~g-DD~Iaiks~~~ni~v 178 (326)
T PF00295_consen 117 HIHINDCDNVTISNITINNPAN-----------------SPNTDGIDIDSSKNVTIENCFIDNG-DDCIAIKSGSGNILV 178 (326)
T ss_dssp SEEEESEEEEEEESEEEEEGGG-----------------CTS--SEEEESEEEEEEESEEEESS-SESEEESSEECEEEE
T ss_pred EEEEEccCCeEEcceEEEecCC-----------------CCCcceEEEEeeeEEEEEEeecccc-cCcccccccccceEE
Confidence 5667789999999999996421 1357999999999999999999766 666788877889999
Q ss_pred EcceeccCCeeeecCCCCCcc-CCcceeEEEEeeEecCCCcCCCcccC---CCeEEEEcceeeCCccee
Q 015623 240 SNNYFTHHDKVMLLGHSDSYT-QDKNMQATIAFNHFGEGLVQRMPRCR---QGYFHVVNNDYTEWQMYA 304 (403)
Q Consensus 240 Snn~f~~H~k~~LiG~sd~~~-~d~~~~VT~~hN~f~~n~~~R~Pr~R---~G~~Hv~NN~y~~~~~ya 304 (403)
+||.|.. ..++-+|+-.... +...-.|+|.++.|. +. .|.-|++ .+...+-|=.|++..+..
T Consensus 179 ~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i~-~t-~~gi~iKt~~~~~G~v~nI~f~ni~~~~ 244 (326)
T PF00295_consen 179 ENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTII-NT-DNGIRIKTWPGGGGYVSNITFENITMEN 244 (326)
T ss_dssp ESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEEE-SE-SEEEEEEEETTTSEEEEEEEEEEEEEEE
T ss_pred EeEEEec-cccceeeeccCCccccEEEeEEEEEEEee-cc-ceEEEEEEecccceEEeceEEEEEEecC
Confidence 9999974 3346677533221 112357899888884 53 3544442 222333344455554443
No 15
>PLN02218 polygalacturonase ADPG
Probab=97.49 E-value=0.005 Score=64.57 Aligned_cols=169 Identities=15% Similarity=0.237 Sum_probs=104.6
Q ss_pred CeEEEEeeceEEEeCceeeecC--CcEEEeeCCeE----E-Ee------CCC-eEEEeccccEEEEeEEEeeeecCCCCc
Q 015623 121 PLWIIFNRDMVIKLNQELVMNS--HKTIDGRGASV----H-IA------DGP-CITIHFATNIIIHGIHIHDCKKAGNGN 186 (403)
Q Consensus 121 P~~IvF~~~g~I~l~~~L~i~s--nkTI~G~ga~i----~-I~------~G~-gi~i~~a~NVIIrnL~i~~~~~~~~~~ 186 (403)
..||.|..- +.|.|.. .=||+|+|..- . .. ..+ -|++.+++|+.|++|++++.
T Consensus 147 ~~wi~~~~~------~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nS------- 213 (431)
T PLN02218 147 SKWIMFDGV------NNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNA------- 213 (431)
T ss_pred ccCEEEecC------cEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcC-------
Confidence 356666431 3455533 26888888510 0 00 011 36778999999999999974
Q ss_pred ccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecC-----CCCCeeeeeeCCceEEEEcceeccCCeeeecCCCCCccC
Q 015623 187 IRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSN-----CQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQ 261 (403)
Q Consensus 187 i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~-----~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~ 261 (403)
..=.|.+..++||.|++.++.. -.||. |+ ..+++|+|++|.|...|...-+.+..+
T Consensus 214 --------------p~w~i~~~~~~nV~i~~v~I~a~~~spNTDGI-di-~ss~nV~I~n~~I~tGDDcIaIksgs~--- 274 (431)
T PLN02218 214 --------------QQIQISIEKCSNVQVSNVVVTAPADSPNTDGI-HI-TNTQNIRVSNSIIGTGDDCISIESGSQ--- 274 (431)
T ss_pred --------------CCEEEEEEceeeEEEEEEEEeCCCCCCCCCcE-ee-cccceEEEEccEEecCCceEEecCCCc---
Confidence 1235888999999999999865 47886 84 578999999999999888777765432
Q ss_pred CcceeEEEEeeEecCCCc------CCCccc-CCCeEEEEcceeeCCcceee------e-cCCCceEEEEccEEeCCCcc
Q 015623 262 DKNMQATIAFNHFGEGLV------QRMPRC-RQGYFHVVNNDYTEWQMYAI------G-GSAAPTINSQGNRFFAPNER 326 (403)
Q Consensus 262 d~~~~VT~~hN~f~~n~~------~R~Pr~-R~G~~Hv~NN~y~~~~~yai------g-g~~~~~i~~egN~F~~~~~~ 326 (403)
.|++.++.++.++. .+.+.- -.-.++|-|+.+.+.. +++ | ++.-..|.+++...+....|
T Consensus 275 ----nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~p 348 (431)
T PLN02218 275 ----NVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTD-NGVRIKTYQGGSGTASNIIFQNIQMENVKNP 348 (431)
T ss_pred ----eEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCC-cceEEeecCCCCeEEEEEEEEeEEEEccccc
Confidence 57777777643211 000000 0014666666665432 222 1 11223467777777766554
No 16
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.41 E-value=0.0018 Score=55.85 Aligned_cols=128 Identities=20% Similarity=0.203 Sum_probs=74.5
Q ss_pred CeEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeeeeeeCCceEE
Q 015623 159 PCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAIT 238 (403)
Q Consensus 159 ~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VT 238 (403)
.+|.+...+++.|++-+|++ .+.+|.+.+..++.|+.|.|+... ..+.+. .+..++
T Consensus 24 ~gi~~~~~~~~~i~n~~i~~----------------------~~~gi~~~~~~~~~i~~~~~~~~~-~~i~~~-~~~~~~ 79 (158)
T PF13229_consen 24 DGIHVSGSSNITIENCTISN----------------------GGYGIYVSGGSNVTISNNTISDNG-SGIYVS-GSSNIT 79 (158)
T ss_dssp ECEEE-SSCESEEES-EEES----------------------STTSEEEECCES-EEES-EEES-S-EEEECC-S-CS-E
T ss_pred eEEEEEcCCCeEEECeEEEC----------------------CCcEEEEecCCCeEEECeEEEEcc-ceEEEE-ecCCce
Confidence 35777666777888888874 357788888899999999999888 444543 788999
Q ss_pred EEcceeccCCe-eeecCCCCCccCCcceeEEEEeeEecCCCcCCCccc--C-CC--eEEEEcceeeCCcceeeecCCCce
Q 015623 239 ISNNYFTHHDK-VMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRC--R-QG--YFHVVNNDYTEWQMYAIGGSAAPT 312 (403)
Q Consensus 239 ISnn~f~~H~k-~~LiG~sd~~~~d~~~~VT~~hN~f~~n~~~R~Pr~--R-~G--~~Hv~NN~y~~~~~yaigg~~~~~ 312 (403)
|++|.|.+... ++.+.. ....+++.+|.|.++ . .+-+ . .. .+-+.+|.+++...+++....+..
T Consensus 80 i~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~~~~-~--~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~ 149 (158)
T PF13229_consen 80 IENNRIENNGDYGIYISN-------SSSNVTIENNTIHNN-G--GSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSS 149 (158)
T ss_dssp EES-EEECSSS-SCE-TC-------EECS-EEES-EEECC-T--TSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS
T ss_pred ecCcEEEcCCCccEEEec-------cCCCEEEEeEEEEeC-c--ceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCC
Confidence 99999987554 444432 012478888888532 2 2222 1 12 567788888877778875444444
Q ss_pred -EEEEccEE
Q 015623 313 -INSQGNRF 320 (403)
Q Consensus 313 -i~~egN~F 320 (403)
+.+.+|.|
T Consensus 150 ~~~v~~n~~ 158 (158)
T PF13229_consen 150 NCTVTNNTF 158 (158)
T ss_dssp --EEES-E-
T ss_pred eEEEECCCC
Confidence 77888876
No 17
>PLN02155 polygalacturonase
Probab=97.38 E-value=0.006 Score=63.33 Aligned_cols=141 Identities=18% Similarity=0.307 Sum_probs=93.6
Q ss_pred eEEEEeeceEEEeCceeeecCCcEEEeeCCeEEEe--CC-------CeEEEeccccEEEEeEEEeeeecCCCCcccCCCC
Q 015623 122 LWIIFNRDMVIKLNQELVMNSHKTIDGRGASVHIA--DG-------PCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPE 192 (403)
Q Consensus 122 ~~IvF~~~g~I~l~~~L~i~snkTI~G~ga~i~I~--~G-------~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~ 192 (403)
.||.|.. .+.+.|.. =||+|||..---. .+ ..|++.+++||.|++|++++.
T Consensus 107 ~wi~~~~------~~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nS------------- 166 (394)
T PLN02155 107 YWILFNK------VNRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNS------------- 166 (394)
T ss_pred eeEEEEC------cCCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcC-------------
Confidence 3676653 23455544 6899998642111 01 137778999999999999964
Q ss_pred CCCCCCCCCCCcEEeeCCccEEEEeeeecC-----CCCCeeeeeeCCceEEEEcceeccCCeeeecCCCCCccCCcceeE
Q 015623 193 HSGWWDASDGDGVSIFSSQHIWIDHCSLSN-----CQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQA 267 (403)
Q Consensus 193 ~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~-----~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~V 267 (403)
..=.|.+.+++||.|+|.++.. -.||. |+ ..+++|+|++|.|...|....+++..+ +|
T Consensus 167 --------p~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGi-di-~~s~nV~I~~~~I~~gDDcIaik~gs~-------nI 229 (394)
T PLN02155 167 --------QVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGF-HV-QFSTGVTFTGSTVQTGDDCVAIGPGTR-------NF 229 (394)
T ss_pred --------CCeEEEEECeeeEEEEEEEEECCCCCCCCCcc-cc-ccceeEEEEeeEEecCCceEEcCCCCc-------eE
Confidence 1234788899999999999964 46876 74 578999999999999888888876532 46
Q ss_pred EEEeeEecCCC------cCCCc-ccCCCeEEEEcceeeC
Q 015623 268 TIAFNHFGEGL------VQRMP-RCRQGYFHVVNNDYTE 299 (403)
Q Consensus 268 T~~hN~f~~n~------~~R~P-r~R~G~~Hv~NN~y~~ 299 (403)
++.++.+..+. ..+.+ .-..-.+.|.|+.+.+
T Consensus 230 ~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~ 268 (394)
T PLN02155 230 LITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTG 268 (394)
T ss_pred EEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeC
Confidence 66666553211 11112 1011257777888765
No 18
>PLN02480 Probable pectinesterase
Probab=97.29 E-value=0.0056 Score=62.44 Aligned_cols=117 Identities=18% Similarity=0.302 Sum_probs=77.1
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCe-EEEeC---------CCeEEEeccccEEEEe
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGAS-VHIAD---------GPCITIHFATNIIIHG 173 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~-i~I~~---------G~gi~i~~a~NVIIrn 173 (403)
|+.+||.+ +..+++||=..|+-+ +.|.| .+|+||.|.+.. ..|.. ++.++| .+++++++|
T Consensus 62 TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a~n 138 (343)
T PLN02480 62 SVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVAFG 138 (343)
T ss_pred cHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEEEe
Confidence 78899854 223556655566544 67777 577999999853 34432 335667 689999999
Q ss_pred EEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEee-CCccEEEEeeeecCCCCCeeeeeeCCceEEEEcceec
Q 015623 174 IHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIF-SSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFT 245 (403)
Q Consensus 174 L~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~ 245 (403)
|+|++..+.+.. ...+.-||-+. .++++.+.+|.|.-..|=|++- ...--+.+|++.
T Consensus 139 LTf~Nta~~g~~------------~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~C~Ie 196 (343)
T PLN02480 139 ISIRNDAPTGMA------------FTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDY---KGRHYYHSCYIQ 196 (343)
T ss_pred eEEEecCCCCCC------------CCCCCceEEEEecCCcEEEEeeEEecccceeEeC---CCCEEEEeCEEE
Confidence 999987532110 11234566664 6899999999999888887652 234445566665
No 19
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.25 E-value=0.0058 Score=56.26 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=29.3
Q ss_pred hHHHhh--h-cCCCeEEEEeeceEEEeCceeeecCCcEEEeeCC
Q 015623 111 TLRHAV--I-QDEPLWIIFNRDMVIKLNQELVMNSHKTIDGRGA 151 (403)
Q Consensus 111 tLr~av--~-~~~P~~IvF~~~g~I~l~~~L~i~snkTI~G~ga 151 (403)
.|+.|+ . ..+..+|.|- .|+..++++|.+.++++|.|.|.
T Consensus 20 Aiq~Ai~~~~~~~g~~v~~P-~G~Y~i~~~l~~~s~v~l~G~g~ 62 (225)
T PF12708_consen 20 AIQAAIDAAAAAGGGVVYFP-PGTYRISGTLIIPSNVTLRGAGG 62 (225)
T ss_dssp HHHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESST
T ss_pred HHHHhhhhcccCCCeEEEEc-CcEEEEeCCeEcCCCeEEEccCC
Confidence 388888 2 3455677775 57999999999999999999876
No 20
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.25 E-value=0.0061 Score=61.26 Aligned_cols=155 Identities=14% Similarity=0.108 Sum_probs=93.9
Q ss_pred cCCcEEEeeCCeEEEeCCCeEEEeccccEEEEeEEEeee------------ecCCCC--cccCCCCCCCCCCCCCCCcEE
Q 015623 141 NSHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDC------------KKAGNG--NIRDSPEHSGWWDASDGDGVS 206 (403)
Q Consensus 141 ~snkTI~G~ga~i~I~~G~gi~i~~a~NVIIrnL~i~~~------------~~~~~~--~i~~~~~~~g~~~~~~~DaIs 206 (403)
.+++||.|.+- +=..+.+|.++.++|++|+++++... ++.... .|++.. .+ ....+||.
T Consensus 62 a~~VtI~~ltI--~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~----i~-g~~d~GIy 134 (314)
T TIGR03805 62 SDDVTLSDLAV--ENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSY----VR-GASDAGIY 134 (314)
T ss_pred eCCeEEEeeEE--EcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCE----EE-CCCcccEE
Confidence 56677766632 11224578888888888888888621 111000 111100 00 12345899
Q ss_pred eeCCccEEEEeeeecCCCCCeeeeeeCCceEEEEcceeccCCeeeecCCCCCccCCcceeEEEEeeEecCCCcCCC----
Q 015623 207 IFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRM---- 282 (403)
Q Consensus 207 i~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~~hN~f~~n~~~R~---- 282 (403)
+..++++.|.+|.+.....|+ -+ ..|.++.|.+|.+.+-.-+.++-..+....-...++.+++|.|..+ ...+
T Consensus 135 v~~s~~~~v~nN~~~~n~~GI-~i-~~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n-~~~n~~~~ 211 (314)
T TIGR03805 135 VGQSQNIVVRNNVAEENVAGI-EI-ENSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDN-NTPNFAPA 211 (314)
T ss_pred ECCCCCeEEECCEEccCcceE-EE-EecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECC-CCCCCccc
Confidence 999999999999999988876 43 3588999999999876556655322221111123789999998644 2221
Q ss_pred -------cccCC------CeEEEEcceeeCCcceee
Q 015623 283 -------PRCRQ------GYFHVVNNDYTEWQMYAI 305 (403)
Q Consensus 283 -------Pr~R~------G~~Hv~NN~y~~~~~yai 305 (403)
|.-+. -.+.++||.+.+....++
T Consensus 212 gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i 247 (314)
T TIGR03805 212 GSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANV 247 (314)
T ss_pred CCceecCCCCcEEEEEcccceEEECCEEeCCcceeE
Confidence 11111 147999999987554443
No 21
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.16 E-value=0.036 Score=57.21 Aligned_cols=175 Identities=16% Similarity=0.168 Sum_probs=126.7
Q ss_pred HHHhhhcCCCeEEEEeeceEEEeCceeeecCCcEEEeeCCeEEEe--CCCeEEE---------eccccEEEEeEEEeeee
Q 015623 112 LRHAVIQDEPLWIIFNRDMVIKLNQELVMNSHKTIDGRGASVHIA--DGPCITI---------HFATNIIIHGIHIHDCK 180 (403)
Q Consensus 112 Lr~av~~~~P~~IvF~~~g~I~l~~~L~i~snkTI~G~ga~i~I~--~G~gi~i---------~~a~NVIIrnL~i~~~~ 180 (403)
|-+|+.+-. -|..+-+-+..++++|.|.+...|+|+||-|.|. ++..|++ .+-.+|.+.|++|..-
T Consensus 57 le~~I~~ha--KVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~- 133 (386)
T PF01696_consen 57 LEEAIRQHA--KVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR- 133 (386)
T ss_pred HHHHHHhcC--EEEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC-
Confidence 788877654 3566666677888999999999999999988884 2333554 2457899999998731
Q ss_pred cCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeeeeeeCCceEEEEcceeccCCeeeecCCCCCcc
Q 015623 181 KAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYT 260 (403)
Q Consensus 181 ~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~ 260 (403)
...-++-+...+++.|.-|+|....-=.|+.. ....|..|+|..-+|++.. .+
T Consensus 134 -------------------~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~-~~---- 186 (386)
T PF01696_consen 134 -------------------DTFSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVS-RG---- 186 (386)
T ss_pred -------------------CccceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeec-CC----
Confidence 12467788889999999999999887777753 5778999999888887632 22
Q ss_pred CCcceeEEEEeeEecCCCcCCCcccCCCeEEEEcceeeCCcceeeecCCCceEEEEccEEeCCCc
Q 015623 261 QDKNMQATIAFNHFGEGLVQRMPRCRQGYFHVVNNDYTEWQMYAIGGSAAPTINSQGNRFFAPNE 325 (403)
Q Consensus 261 ~d~~~~VT~~hN~f~~n~~~R~Pr~R~G~~Hv~NN~y~~~~~yaigg~~~~~i~~egN~F~~~~~ 325 (403)
+.++++.+|.| +.|.== -+-.|..++.+|...+-.-...-. .+-.+.+|.|..+..
T Consensus 187 ---~~~lsVk~C~F-ekC~ig--i~s~G~~~i~hn~~~ec~Cf~l~~---g~g~i~~N~v~~~~~ 242 (386)
T PF01696_consen 187 ---KSKLSVKKCVF-EKCVIG--IVSEGPARIRHNCASECGCFVLMK---GTGSIKHNMVCGPND 242 (386)
T ss_pred ---cceEEeeheee-eheEEE--EEecCCeEEecceecccceEEEEc---ccEEEeccEEeCCCC
Confidence 23688899999 555411 123578999999998765333322 234778999987765
No 22
>PLN02197 pectinesterase
Probab=97.08 E-value=0.08 Score=57.67 Aligned_cols=152 Identities=26% Similarity=0.429 Sum_probs=96.8
Q ss_pred CCCcc--ccccccccCccccccCCcCCCCCeE---EEEcCCCCCCCCCCCch---hHHHhhhc----CCCeEEEEeeceE
Q 015623 64 DPNWE--GNRQRLADCAIGFGRDAIGGRNGRI---YVVTDSGDDNPTNPKPG---TLRHAVIQ----DEPLWIIFNRDMV 131 (403)
Q Consensus 64 ~~~w~--~~~~~la~~a~GfG~~ttGG~gG~v---~~VT~~~d~~~~~p~pG---tLr~av~~----~~P~~IvF~~~g~ 131 (403)
.|.|- .+|+-|. +.+.|.++-||.++.+ ++|. .| +.| |+.+||.. +..|+||+=+.|+
T Consensus 244 ~p~w~~~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa--~d------GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv 313 (588)
T PLN02197 244 IPTWVSGADRKLMA--KAGRGANAGGGGGGKIKATHVVA--KD------GSGQFKTISQAVMACPDKNPGRCIIHIKAGI 313 (588)
T ss_pred CCCCCCccchhhhc--cCcccccccccccccccccEEEc--CC------CCCCcCCHHHHHHhccccCCceEEEEEeCce
Confidence 58897 4566664 3455667777776643 3332 12 444 88889854 3346666666676
Q ss_pred EEeCceeee---cCCcEEEeeCCeEE-Ee--------CCC------eEEEeccccEEEEeEEEeeeecCCCCcccCCCCC
Q 015623 132 IKLNQELVM---NSHKTIDGRGASVH-IA--------DGP------CITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEH 193 (403)
Q Consensus 132 I~l~~~L~i---~snkTI~G~ga~i~-I~--------~G~------gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~ 193 (403)
.++.+.| .+|+||.|.|.+-+ |. +|. .+.+ .+++++.|||.|++....
T Consensus 314 --Y~E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v-~~~~F~a~nitf~Ntag~----------- 379 (588)
T PLN02197 314 --YNEQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQV-ESEGFMAKWIGFKNTAGP----------- 379 (588)
T ss_pred --EEEEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEE-ECCcEEEEEeEEEeCCCC-----------
Confidence 4466777 36899999987433 32 121 3334 689999999999985310
Q ss_pred CCCCCCCCCCcEEee-CCccEEEEeeeecCCCC-----------------CeeeeeeCCceEEEEcceec
Q 015623 194 SGWWDASDGDGVSIF-SSQHIWIDHCSLSNCQD-----------------GLIDAIHGSTAITISNNYFT 245 (403)
Q Consensus 194 ~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~D-----------------gliDv~~gs~~VTISnn~f~ 245 (403)
...-|+-+. .+...-+.+|.|.-..| |.+|.+-|.-.+-+++|.|.
T Consensus 380 ------~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~i~ 443 (588)
T PLN02197 380 ------MGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLIV 443 (588)
T ss_pred ------CCCceEEEEecCCcEEEEEeEEEecCcceEecCCCEEEEeeEEEecccccccceeeeeecCEEE
Confidence 122344443 47889999999887544 45566666667788888875
No 23
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.04 E-value=0.025 Score=53.58 Aligned_cols=63 Identities=29% Similarity=0.323 Sum_probs=35.2
Q ss_pred CcEEeeCCccEEEEeeeecCCCCCeeeeeeCCceEEEEcceeccCCeeeecCCCCCccCCcceeEEEEeeEec
Q 015623 203 DGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFG 275 (403)
Q Consensus 203 DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~~hN~f~ 275 (403)
+||.+..+.+..|..+.|+...+|. - ..++...||++|.|.+...++.+-.+. +.++.+|.|.
T Consensus 80 ~Gi~l~~s~~~~I~~N~i~~n~~GI-~-l~~s~~~~I~~N~i~~~~~GI~l~~s~--------~n~I~~N~i~ 142 (236)
T PF05048_consen 80 YGIYLMGSSNNTISNNTISNNGYGI-Y-LYGSSNNTISNNTISNNGYGIYLSSSS--------NNTITGNTIS 142 (236)
T ss_pred CCEEEEcCCCcEEECCEecCCCceE-E-EeeCCceEEECcEEeCCCEEEEEEeCC--------CCEEECeEEe
Confidence 5666666665566666666666644 2 234555666666666555554443332 3455566664
No 24
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=96.95 E-value=0.011 Score=56.07 Aligned_cols=129 Identities=22% Similarity=0.143 Sum_probs=93.2
Q ss_pred CeEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeeeeeeCCceEE
Q 015623 159 PCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAIT 238 (403)
Q Consensus 159 ~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VT 238 (403)
.++.+..+.++.|++.+|++. ..||.+..++++-|..|.++.+.+|. .+ ..+.+.+
T Consensus 36 ~gi~~~~s~~~~I~~n~i~~~----------------------~~GI~~~~s~~~~i~~n~i~~n~~Gi-~l-~~s~~~~ 91 (236)
T PF05048_consen 36 DGIYVENSDNNTISNNTISNN----------------------RYGIHLMGSSNNTIENNTISNNGYGI-YL-MGSSNNT 91 (236)
T ss_pred CEEEEEEcCCeEEEeeEEECC----------------------CeEEEEEccCCCEEEeEEEEccCCCE-EE-EcCCCcE
Confidence 356677889999999988742 57799999999999999999999886 43 3455559
Q ss_pred EEcceeccCCeeeecCCCCCccCCcceeEEEEeeEecCCCcCCCcccCC-CeEEEEcceeeCCcceeee-cCCCceEEEE
Q 015623 239 ISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQ-GYFHVVNNDYTEWQMYAIG-GSAAPTINSQ 316 (403)
Q Consensus 239 ISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~~hN~f~~n~~~R~Pr~R~-G~~Hv~NN~y~~~~~yaig-g~~~~~i~~e 316 (403)
|++|.|.+...+.++-.+. ..++..|.|. +.. .--.+.. ....+.+|.+.+...|++. ........+.
T Consensus 92 I~~N~i~~n~~GI~l~~s~--------~~~I~~N~i~-~~~-~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~ 161 (236)
T PF05048_consen 92 ISNNTISNNGYGIYLYGSS--------NNTISNNTIS-NNG-YGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIY 161 (236)
T ss_pred EECCEecCCCceEEEeeCC--------ceEEECcEEe-CCC-EEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEE
Confidence 9999999766666554443 3678888884 322 2222222 4678889999877667776 4444567889
Q ss_pred ccEEe
Q 015623 317 GNRFF 321 (403)
Q Consensus 317 gN~F~ 321 (403)
+|+|.
T Consensus 162 ~N~f~ 166 (236)
T PF05048_consen 162 NNNFN 166 (236)
T ss_pred CCCcc
Confidence 99993
No 25
>smart00656 Amb_all Amb_all domain.
Probab=96.91 E-value=0.078 Score=49.58 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=80.8
Q ss_pred CCcEEEeeCCeEEEeCCCeEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCc-EEee-CCccEEEEeee
Q 015623 142 SHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDG-VSIF-SSQHIWIDHCS 219 (403)
Q Consensus 142 snkTI~G~ga~i~I~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~Da-Isi~-gs~nVWIDHcs 219 (403)
.|++|.+..... ..++-.|.+..++||+|.+..|...... +. .....|+ +.+. ++.+|=|-.|.
T Consensus 45 rnl~i~~~~~~~-~~~~D~i~~~~~~~VwIDHct~s~~~~~------------~~-~~~~~D~~~di~~~s~~vTvs~~~ 110 (190)
T smart00656 45 RNLTIHDPKPVY-GSDGDAISIDGSSNVWIDHVSLSGCTVT------------GF-GDDTYDGLIDIKNGSTYVTISNNY 110 (190)
T ss_pred eCCEEECCccCC-CCCCCEEEEeCCCeEEEEccEeEcceec------------cC-CCCCCCccEEECcccccEEEECce
Confidence 477777653321 1234578888999999999999975221 11 0122344 4454 57888888888
Q ss_pred ecCCCCCeeeeeeCC------ceEEEEcceeccCC-eeeecCCCCCccCCcceeEEEEeeEecCCCcCCCcccC-CCeEE
Q 015623 220 LSNCQDGLIDAIHGS------TAITISNNYFTHHD-KVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCR-QGYFH 291 (403)
Q Consensus 220 ~s~~~DgliDv~~gs------~~VTISnn~f~~H~-k~~LiG~sd~~~~d~~~~VT~~hN~f~~n~~~R~Pr~R-~G~~H 291 (403)
|....-+.+-....+ -.||+.+|+|.+.. +..++.. -++-+.+|+|- +..+-.--++ .+.+.
T Consensus 111 f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~---------g~~hv~NN~~~-n~~~~~~~~~~~~~v~ 180 (190)
T smart00656 111 FHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRF---------GYVHVYNNYYT-GWTSYAIGGRMGATIL 180 (190)
T ss_pred EecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccC---------CEEEEEeeEEe-CcccEeEecCCCcEEE
Confidence 876544444322112 26999999998632 3333321 15777889984 5332222222 36899
Q ss_pred EEcceeeC
Q 015623 292 VVNNDYTE 299 (403)
Q Consensus 292 v~NN~y~~ 299 (403)
+-||||.+
T Consensus 181 ~E~N~F~~ 188 (190)
T smart00656 181 SEGNYFEA 188 (190)
T ss_pred EECeEEEC
Confidence 99999976
No 26
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=96.90 E-value=0.036 Score=58.24 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=90.9
Q ss_pred CcEEEeeCCeEEEeCCCeEEEeccccEEEEeEEEeeee-c-----CCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEE
Q 015623 143 HKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCK-K-----AGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWID 216 (403)
Q Consensus 143 nkTI~G~ga~i~I~~G~gi~i~~a~NVIIrnL~i~~~~-~-----~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWID 216 (403)
.+||+|.|.+-.-. -++|.++.++++.|++.+|++.- - +....|.+.. -.+ ....+|.++.++++.|.
T Consensus 121 GLtIdGsG~dl~~r-dAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~-I~g----~~~~~I~lw~S~g~~V~ 194 (455)
T TIGR03808 121 GLTLDGGGIPLPQR-RGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNT-ITQ----IAVTAIVSFDALGLIVA 194 (455)
T ss_pred eeEEEeCCCcccCC-CCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecce-Eec----cccceEEEeccCCCEEE
Confidence 33666666533222 23688889999999999998751 0 0011111100 001 12345888899999999
Q ss_pred eeeecCCCCCeeeeee-----------------------------------CCceEEEEcceeccCCeeeecCCCCCccC
Q 015623 217 HCSLSNCQDGLIDAIH-----------------------------------GSTAITISNNYFTHHDKVMLLGHSDSYTQ 261 (403)
Q Consensus 217 Hcs~s~~~DgliDv~~-----------------------------------gs~~VTISnn~f~~H~k~~LiG~sd~~~~ 261 (403)
+++++.+.|+.|-+.+ .+.+++|++|.++++.+--+.+.+.+
T Consensus 195 ~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss--- 271 (455)
T TIGR03808 195 RNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSAS--- 271 (455)
T ss_pred CCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEccc---
Confidence 9999999886444332 35688888888888873333332222
Q ss_pred CcceeEEEEeeEecCCCcCCCcccCC-C-------e-EEEEcceeeCC-cceeee-cCCCce-EEEEccEEeC
Q 015623 262 DKNMQATIAFNHFGEGLVQRMPRCRQ-G-------Y-FHVVNNDYTEW-QMYAIG-GSAAPT-INSQGNRFFA 322 (403)
Q Consensus 262 d~~~~VT~~hN~f~~n~~~R~Pr~R~-G-------~-~Hv~NN~y~~~-~~yaig-g~~~~~-i~~egN~F~~ 322 (403)
++.+..|.|. ++|| + . ..+.||.++.. ..|++- -.++.. ..++||...+
T Consensus 272 ----~~~i~~N~~~--------~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn 332 (455)
T TIGR03808 272 ----NIQITGNSVS--------DVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRN 332 (455)
T ss_pred ----CcEEECcEee--------eeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeec
Confidence 2444455551 2344 2 1 34667777643 356663 223333 3567777765
No 27
>PLN02793 Probable polygalacturonase
Probab=96.88 E-value=0.021 Score=60.18 Aligned_cols=109 Identities=17% Similarity=0.264 Sum_probs=78.0
Q ss_pred eeeecCCcEEEeeCCeEE-----EeC-------CCeEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCc
Q 015623 137 ELVMNSHKTIDGRGASVH-----IAD-------GPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDG 204 (403)
Q Consensus 137 ~L~i~snkTI~G~ga~i~-----I~~-------G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~Da 204 (403)
.|.|...=||+|+|..-. ... -.-|.+.+++||.|++|++++. ..=.
T Consensus 144 ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nS---------------------p~~~ 202 (443)
T PLN02793 144 HLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDS---------------------QQMH 202 (443)
T ss_pred eEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcC---------------------CCeE
Confidence 455544568888886211 100 1136778999999999999964 1234
Q ss_pred EEeeCCccEEEEeeeecC-----CCCCeeeeeeCCceEEEEcceeccCCeeeecCCCCCccCCcceeEEEEeeEec
Q 015623 205 VSIFSSQHIWIDHCSLSN-----CQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFG 275 (403)
Q Consensus 205 Isi~gs~nVWIDHcs~s~-----~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~~hN~f~ 275 (403)
|.+.+++||.|++.++.. -.||. |+ ..+++|+|++|.|...|....+.+..+ +|++.++.+.
T Consensus 203 i~~~~~~nv~i~~l~I~~p~~spNTDGI-di-~~s~nV~I~n~~I~~gDDcIaik~~s~-------nI~I~n~~c~ 269 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPATSPNTDGI-HI-SASRGVVIKDSIVRTGDDCISIVGNSS-------RIKIRNIACG 269 (443)
T ss_pred EEEEccCcEEEEEEEEECCCCCCCCCcE-ee-eccceEEEEeCEEeCCCCeEEecCCcC-------CEEEEEeEEe
Confidence 778889999999999964 47886 84 578999999999999888877764322 4777666663
No 28
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=96.75 E-value=0.077 Score=51.89 Aligned_cols=187 Identities=21% Similarity=0.240 Sum_probs=102.4
Q ss_pred hhHHHhhhcCCCe-EEEEeeceEEEeC----ceeeecCCcEEEeeCC-----eEEEeC--------CC-------eEEEe
Q 015623 110 GTLRHAVIQDEPL-WIIFNRDMVIKLN----QELVMNSHKTIDGRGA-----SVHIAD--------GP-------CITIH 164 (403)
Q Consensus 110 GtLr~av~~~~P~-~IvF~~~g~I~l~----~~L~i~snkTI~G~ga-----~i~I~~--------G~-------gi~i~ 164 (403)
-||.+|+.+-.|- +|.+ ..|+.+-. -+|.+.+.+||.|..+ .+.+.+ |. .++|.
T Consensus 16 ~Ti~~A~~~a~~g~~i~l-~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~ 94 (246)
T PF07602_consen 16 KTITKALQAAQPGDTIQL-APGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTII 94 (246)
T ss_pred HHHHHHHHhCCCCCEEEE-CCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEE
Confidence 4888999876665 4444 45665543 2578888999988644 222222 21 14455
Q ss_pred ccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCC-CCCeeeee----eCCceEEE
Q 015623 165 FATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNC-QDGLIDAI----HGSTAITI 239 (403)
Q Consensus 165 ~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~-~DgliDv~----~gs~~VTI 239 (403)
.+++..|++++|++..+ ..+-||.|.++ +.-|..|+|+.+ .+|..... .....++|
T Consensus 95 ~~~~~~i~GvtItN~n~------------------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI 155 (246)
T PF07602_consen 95 LANNATISGVTITNPNI------------------ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVI 155 (246)
T ss_pred ecCCCEEEEEEEEcCCC------------------CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEe
Confidence 67888888888886421 25678999777 888999999996 56643311 13456778
Q ss_pred EcceeccCCeeeecCCCCCccCCcceeEEEEeeEecCCCc-----CCCcccCCC-eEEEEcceeeCCcceeeecCC--Cc
Q 015623 240 SNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLV-----QRMPRCRQG-YFHVVNNDYTEWQMYAIGGSA--AP 311 (403)
Q Consensus 240 Snn~f~~H~k~~LiG~sd~~~~d~~~~VT~~hN~f~~n~~-----~R~Pr~R~G-~~Hv~NN~y~~~~~yaigg~~--~~ 311 (403)
+.|.+.....+.-+-.... . ....+-+|++.+|.. ...|-+..+ ...+-||.+.+.+.|.+.-.. .-
T Consensus 156 ~GN~~~~~~~Gi~i~~~~~-~----~~n~I~NN~I~~N~~Gi~~~~~~pDlG~~s~~~~g~N~~~~N~~~Dl~~~~~~~~ 230 (246)
T PF07602_consen 156 SGNSIYFNKTGISISDNAA-P----VENKIENNIIENNNIGIVAIGDAPDLGTGSEGSPGNNIFRNNGRYDLNNSATPGQ 230 (246)
T ss_pred ecceEEecCcCeEEEcccC-C----ccceeeccEEEeCCcCeEeeccCCccccCCCCCCCCcEEecCcceeeEeccCCce
Confidence 8877664333222211110 0 011223444432211 111322211 223556777666666665422 23
Q ss_pred eEEEEccEEe
Q 015623 312 TINSQGNRFF 321 (403)
Q Consensus 312 ~i~~egN~F~ 321 (403)
++++.||-..
T Consensus 231 ~l~a~gN~ld 240 (246)
T PF07602_consen 231 TLYAVGNQLD 240 (246)
T ss_pred eEEEeCCccC
Confidence 6667777554
No 29
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=96.73 E-value=0.015 Score=58.68 Aligned_cols=109 Identities=20% Similarity=0.314 Sum_probs=75.5
Q ss_pred eeeecCCcEEEeeCCeEE-EeC---------CCeEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEE
Q 015623 137 ELVMNSHKTIDGRGASVH-IAD---------GPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVS 206 (403)
Q Consensus 137 ~L~i~snkTI~G~ga~i~-I~~---------G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIs 206 (403)
.+.+...=||+|+|..-. ..+ -..|++.+++|+.|++|++++.. .=.+.
T Consensus 61 ni~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp---------------------~w~~~ 119 (326)
T PF00295_consen 61 NITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSP---------------------FWHIH 119 (326)
T ss_dssp EEECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-S---------------------SESEE
T ss_pred EEEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCC---------------------eeEEE
Confidence 345555569999987100 000 11477888999999999999641 12488
Q ss_pred eeCCccEEEEeeeecC-----CCCCeeeeeeCCceEEEEcceeccCCeeeecCCCCCccCCcceeEEEEeeEec
Q 015623 207 IFSSQHIWIDHCSLSN-----CQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFG 275 (403)
Q Consensus 207 i~gs~nVWIDHcs~s~-----~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~~hN~f~ 275 (403)
+..++||+|+|.++.. -.||. |+ .++++|+|.+|.|...|...-+.+... .|++.+++|.
T Consensus 120 ~~~~~nv~i~~i~I~~~~~~~NtDGi-d~-~~s~nv~I~n~~i~~gDD~Iaiks~~~-------ni~v~n~~~~ 184 (326)
T PF00295_consen 120 INDCDNVTISNITINNPANSPNTDGI-DI-DSSKNVTIENCFIDNGDDCIAIKSGSG-------NILVENCTCS 184 (326)
T ss_dssp EESEEEEEEESEEEEEGGGCTS--SE-EE-ESEEEEEEESEEEESSSESEEESSEEC-------EEEEESEEEE
T ss_pred EEccCCeEEcceEEEecCCCCCcceE-EE-EeeeEEEEEEeecccccCccccccccc-------ceEEEeEEEe
Confidence 8899999999999864 36886 75 578999999999998887776655432 5777788874
No 30
>PLN03003 Probable polygalacturonase At3g15720
Probab=96.73 E-value=0.019 Score=60.65 Aligned_cols=117 Identities=19% Similarity=0.311 Sum_probs=84.5
Q ss_pred eEEEEeeceEEEeCceeeecCCcEEEeeCCeEEE---eCCCeEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCC
Q 015623 122 LWIIFNRDMVIKLNQELVMNSHKTIDGRGASVHI---ADGPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWD 198 (403)
Q Consensus 122 ~~IvF~~~g~I~l~~~L~i~snkTI~G~ga~i~I---~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~ 198 (403)
.||.|..- +.|.|...=||+|||..-.- ..-.-|++.+++|+.|++|++++.
T Consensus 105 ~wI~f~~~------~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NS------------------- 159 (456)
T PLN03003 105 QWILFTDI------EGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDS------------------- 159 (456)
T ss_pred ceEEEEcc------cceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecC-------------------
Confidence 48888641 23556545689999863110 001247788999999999999974
Q ss_pred CCCCCcEEeeCCccEEEEeeeecC-----CCCCeeeeeeCCceEEEEcceeccCCeeeecCCCCCccCCcceeEEEEeeE
Q 015623 199 ASDGDGVSIFSSQHIWIDHCSLSN-----CQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNH 273 (403)
Q Consensus 199 ~~~~DaIsi~gs~nVWIDHcs~s~-----~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~~hN~ 273 (403)
..=.|.+.+++||.|++.++.. -.||. |+ ..+++|+|.+|.+...|...-+.+..+ +|++.++.
T Consensus 160 --p~w~i~i~~c~nV~i~~l~I~ap~~spNTDGI-Di-~~S~nV~I~n~~I~tGDDCIaiksgs~-------NI~I~n~~ 228 (456)
T PLN03003 160 --PMAHIHISECNYVTISSLRINAPESSPNTDGI-DV-GASSNVVIQDCIIATGDDCIAINSGTS-------NIHISGID 228 (456)
T ss_pred --CcEEEEEeccccEEEEEEEEeCCCCCCCCCcE-ee-cCcceEEEEecEEecCCCeEEeCCCCc-------cEEEEeeE
Confidence 2234888899999999999975 47886 84 578999999999999888887776532 46666665
Q ss_pred e
Q 015623 274 F 274 (403)
Q Consensus 274 f 274 (403)
+
T Consensus 229 c 229 (456)
T PLN03003 229 C 229 (456)
T ss_pred E
Confidence 5
No 31
>PLN03010 polygalacturonase
Probab=96.67 E-value=0.025 Score=59.02 Aligned_cols=139 Identities=20% Similarity=0.239 Sum_probs=89.0
Q ss_pred eEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecC-----CCCCeeeeeeCC
Q 015623 160 CITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSN-----CQDGLIDAIHGS 234 (403)
Q Consensus 160 gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~-----~~DgliDv~~gs 234 (403)
-|++.+++||.|++|++++. ..=.|.+.+++||.|++..+.. -.||. |+ ..+
T Consensus 159 ~l~~~~~~nv~v~gitl~ns---------------------p~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGi-Di-~~s 215 (409)
T PLN03010 159 ALHISKCDNLTINGITSIDS---------------------PKNHISIKTCNYVAISKINILAPETSPNTDGI-DI-SYS 215 (409)
T ss_pred eEEEEeecCeEEeeeEEEcC---------------------CceEEEEeccccEEEEEEEEeCCCCCCCCCce-ee-ecc
Confidence 37788999999999999974 1234888899999999999864 47886 84 578
Q ss_pred ceEEEEcceeccCCeeeecCCCCCccCCcceeEEEEeeEecCCC----cCCCcc-cCCCeEEEEcceeeCCc-ceeee--
Q 015623 235 TAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGL----VQRMPR-CRQGYFHVVNNDYTEWQ-MYAIG-- 306 (403)
Q Consensus 235 ~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~~hN~f~~n~----~~R~Pr-~R~G~~Hv~NN~y~~~~-~yaig-- 306 (403)
++|+|++|.+...|...-+.+... ...|+..++..+++. ...... --.-.+++.|+.+++-. ...|-
T Consensus 216 ~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~ 290 (409)
T PLN03010 216 TNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTW 290 (409)
T ss_pred ceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEe
Confidence 999999999999998888876532 234544444433221 001000 00124677777776531 11111
Q ss_pred -cC--CCceEEEEccEEeCCCcc
Q 015623 307 -GS--AAPTINSQGNRFFAPNER 326 (403)
Q Consensus 307 -g~--~~~~i~~egN~F~~~~~~ 326 (403)
++ .-..|.+|+-.++....|
T Consensus 291 ~G~~G~v~nItf~nI~m~~v~~p 313 (409)
T PLN03010 291 QGGQGYARNISFENITLINTKNP 313 (409)
T ss_pred cCCCEEEEEeEEEeEEEecCCcc
Confidence 11 113467777777776655
No 32
>PLN02176 putative pectinesterase
Probab=96.50 E-value=0.056 Score=55.17 Aligned_cols=118 Identities=20% Similarity=0.275 Sum_probs=74.1
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCeEE-Ee--C------CCeEEEeccccEEEEeE
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGASVH-IA--D------GPCITIHFATNIIIHGI 174 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~i~-I~--~------G~gi~i~~a~NVIIrnL 174 (403)
|+.+||.. +..+++||-..|+-+ +.|.| .+|+||.|.|.+-+ |. + .+.+.+ .+++++.+||
T Consensus 53 TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~a~~F~a~nl 129 (340)
T PLN02176 53 TVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-YASNIIITGI 129 (340)
T ss_pred CHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-ECCCEEEEee
Confidence 78888843 233566666667644 66777 47899999987433 32 1 125556 6899999999
Q ss_pred EEeeeecCCCCcccCCCCCCCCCCCCCCCcEEee-CCccEEEEeeeecCCCCCeeeeeeCCceEEEEcceec
Q 015623 175 HIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIF-SSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFT 245 (403)
Q Consensus 175 ~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~ 245 (403)
+|++..+..+ ..+ ...+-|+-+. .+..+-+.+|.|.-..|=|.+- ...--+.+|++.
T Consensus 130 T~~Nt~~~~~--------~~~---~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~---~gRqyf~~CyIe 187 (340)
T PLN02176 130 TFKNTYNIAS--------NSS---RPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDG---KGRHYYKRCVIS 187 (340)
T ss_pred EEEeCCCccC--------CCC---CCccceEEEEecCccEEEEccEEecccceeEeC---CcCEEEEecEEE
Confidence 9998653100 000 0123444443 4788999999999877777651 234445555555
No 33
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=96.34 E-value=0.045 Score=57.07 Aligned_cols=168 Identities=21% Similarity=0.273 Sum_probs=104.3
Q ss_pred eEEEEeeceEEEeCceeeecCCcEEEeeCCeEE------Ee-C----CCeEEEeccccEEEEeEEEeeeecCCCCcccCC
Q 015623 122 LWIIFNRDMVIKLNQELVMNSHKTIDGRGASVH------IA-D----GPCITIHFATNIIIHGIHIHDCKKAGNGNIRDS 190 (403)
Q Consensus 122 ~~IvF~~~g~I~l~~~L~i~snkTI~G~ga~i~------I~-~----G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~ 190 (403)
.||.|.. -..|.|...=||+|+|..-- .. + -.-|.+..++||.|++|++++.
T Consensus 114 ~~i~~~~------~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS----------- 176 (404)
T PLN02188 114 DWIEFGW------VNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS----------- 176 (404)
T ss_pred ceEEEec------eeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC-----------
Confidence 4777641 13466666678888886210 00 0 1135677899999999999974
Q ss_pred CCCCCCCCCCCCCcEEeeCCccEEEEeeeecC-----CCCCeeeeeeCCceEEEEcceeccCCeeeecCCCCCccCCcce
Q 015623 191 PEHSGWWDASDGDGVSIFSSQHIWIDHCSLSN-----CQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNM 265 (403)
Q Consensus 191 ~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~-----~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~ 265 (403)
..=.|.+..++||.|++.++.. -.||. |+ ..+++|+|.+|.|...|...-+++..+
T Consensus 177 ----------p~w~i~~~~~~~v~i~~v~I~~~~~spNtDGi-di-~~s~nV~I~n~~I~~GDDcIaiksg~~------- 237 (404)
T PLN02188 177 ----------KFFHIALVECRNFKGSGLKISAPSDSPNTDGI-HI-ERSSGVYISDSRIGTGDDCISIGQGNS------- 237 (404)
T ss_pred ----------CCeEEEEEccccEEEEEEEEeCCCCCCCCCcE-ee-eCcccEEEEeeEEeCCCcEEEEccCCc-------
Confidence 2234888899999999999875 46886 84 578999999999999888887865432
Q ss_pred eEEEEeeEecCCC------cCCCcc-cCCCeEEEEcceeeCCcceeee-----c----CCCceEEEEccEEeCCCcc
Q 015623 266 QATIAFNHFGEGL------VQRMPR-CRQGYFHVVNNDYTEWQMYAIG-----G----SAAPTINSQGNRFFAPNER 326 (403)
Q Consensus 266 ~VT~~hN~f~~n~------~~R~Pr-~R~G~~Hv~NN~y~~~~~yaig-----g----~~~~~i~~egN~F~~~~~~ 326 (403)
+|++-++....+. ..+.+. -....+.+-|+.+.+-. +++. + ..-..|.+++-.++....|
T Consensus 238 nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~-~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~p 313 (404)
T PLN02188 238 QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRIKTWANSPGKSAATNMTFENIVMNNVTNP 313 (404)
T ss_pred cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEEEEecCCCCceEEEEEEEEeEEecCccce
Confidence 4666665553211 001000 01124677777776532 2211 0 1112466777777666554
No 34
>PLN02682 pectinesterase family protein
Probab=96.19 E-value=0.66 Score=47.99 Aligned_cols=171 Identities=15% Similarity=0.138 Sum_probs=94.2
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCe-EEEeC----------C--------CeEEEe
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGAS-VHIAD----------G--------PCITIH 164 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~-i~I~~----------G--------~gi~i~ 164 (403)
|+.+||.. +..+++|+=..|+ .++.|.| .+|+||.|.|.+ ..|.. | +.+.+
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~--Y~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v- 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGT--YREKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV- 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCce--eeEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE-
Confidence 77888853 2234445444565 3466777 579999999874 33321 1 13444
Q ss_pred ccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCC-----------------Ce
Q 015623 165 FATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQD-----------------GL 227 (403)
Q Consensus 165 ~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~D-----------------gl 227 (403)
.+++++.+||+|++..+.. ++ |.. ....-|+.+ .+.++-+.+|.|.-..| |.
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~------~~---g~~-g~QAVAL~v-~gDr~~fy~C~f~G~QDTLy~~~gRqyf~~C~IeG~ 229 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVP------PP---GAL-GKQAVALRI-SADTAAFYGCKFLGAQDTLYDHLGRHYFKDCYIEGS 229 (369)
T ss_pred ECCCeEEEeeEEEcccccC------CC---CCC-cccEEEEEe-cCCcEEEEcceEeccccceEECCCCEEEEeeEEccc
Confidence 6899999999999865321 00 110 012334444 47889999999887544 55
Q ss_pred eeeeeCCceEEEEcceecc--CCeeeecCCCCCccCCcceeEEEEeeEecCCC----cCCCcccCCCeEEEEcceee
Q 015623 228 IDAIHGSTAITISNNYFTH--HDKVMLLGHSDSYTQDKNMQATIAFNHFGEGL----VQRMPRCRQGYFHVVNNDYT 298 (403)
Q Consensus 228 iDv~~gs~~VTISnn~f~~--H~k~~LiG~sd~~~~d~~~~VT~~hN~f~~n~----~~R~Pr~R~G~~Hv~NN~y~ 298 (403)
+|.+.|.-..-+.+|.|.. ...+.+--++-.. .+...-.-|+++.+. .. -.| |.-.+..+-+.|.++.
T Consensus 230 VDFIFG~g~a~Fe~C~I~s~~~~~G~ITA~~r~~-~~~~~GfvF~~C~it-g~g~~yLGR-pW~~yarvVf~~t~m~ 303 (369)
T PLN02682 230 VDFIFGNGLSLYEGCHLHAIARNFGALTAQKRQS-VLEDTGFSFVNCKVT-GSGALYLGR-AWGTFSRVVFAYTYMD 303 (369)
T ss_pred ccEEecCceEEEEccEEEEecCCCeEEecCCCCC-CCCCceEEEEeeEec-CCCceEeec-CCCCcceEEEEeccCC
Confidence 5666666667777777752 1122222111100 011123445555552 10 134 3334567777777765
No 35
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=95.92 E-value=0.087 Score=56.92 Aligned_cols=100 Identities=17% Similarity=0.341 Sum_probs=66.3
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCeEE-EeC------C------CeEEEeccccEE
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGASVH-IAD------G------PCITIHFATNII 170 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~i~-I~~------G------~gi~i~~a~NVI 170 (403)
|+.+||.. +..++||+=..|+. ++.|.| .+|+||.|.|.+.+ |.+ | +.+.+ .+++++
T Consensus 244 TIq~Ai~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 320 (541)
T PLN02416 244 TITDAINFAPNNSNDRIIIYVREGVY--EENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAV-SGEGFL 320 (541)
T ss_pred CHHHHHHhhhhcCCceEEEEEeCcee--EEEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEE-ECCCeE
Confidence 78888853 44567776667764 466766 47999999998543 432 1 23445 689999
Q ss_pred EEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeee
Q 015623 171 IHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLID 229 (403)
Q Consensus 171 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliD 229 (403)
.+||.|++.... .....-|+.+ .+.++-+-+|.|.-..|=|.+
T Consensus 321 a~nitf~Ntag~---------------~~~QAVAl~v-~~D~~~fy~c~~~G~QDTLy~ 363 (541)
T PLN02416 321 ARDITIENTAGP---------------EKHQAVALRV-NADLVALYRCTINGYQDTLYV 363 (541)
T ss_pred EEeeEEEECCCC---------------CCCceEEEEE-cCccEEEEcceEecccchhcc
Confidence 999999985321 0123445555 478889999998876665543
No 36
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=95.85 E-value=0.12 Score=56.06 Aligned_cols=115 Identities=18% Similarity=0.314 Sum_probs=73.8
Q ss_pred hHHHhhhc-----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCeEE-EeC-------C------CeEEEecccc
Q 015623 111 TLRHAVIQ-----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGASVH-IAD-------G------PCITIHFATN 168 (403)
Q Consensus 111 tLr~av~~-----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~i~-I~~-------G------~gi~i~~a~N 168 (403)
|+.+||.. ...|.|||=+.|+.+ +.|.| ..|+||.|.|.+-+ |.+ | +.+.+ .+++
T Consensus 255 TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v-~~~~ 331 (553)
T PLN02708 255 TVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGV-LGDG 331 (553)
T ss_pred CHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEE-EcCC
Confidence 78888843 133566666667644 55666 57999999987533 331 2 12444 6899
Q ss_pred EEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEee-CCccEEEEeeeecCCCC-----------------Ceeee
Q 015623 169 IIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIF-SSQHIWIDHCSLSNCQD-----------------GLIDA 230 (403)
Q Consensus 169 VIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~D-----------------gliDv 230 (403)
++.+||+|++... + ...-|+-++ .+..+.+.+|.|.-..| |.+|.
T Consensus 332 f~a~~it~~Ntag--~---------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtVDF 394 (553)
T PLN02708 332 FMARDLTIQNTAG--P---------------DAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDF 394 (553)
T ss_pred eEEEeeEEEcCCC--C---------------CCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEEeecCCE
Confidence 9999999998521 1 123455554 57899999999987544 45555
Q ss_pred eeCCceEEEEcceec
Q 015623 231 IHGSTAITISNNYFT 245 (403)
Q Consensus 231 ~~gs~~VTISnn~f~ 245 (403)
+-|.-.+-+++|.|.
T Consensus 395 IFG~a~avfq~c~i~ 409 (553)
T PLN02708 395 IFGNSAAVFQDCAIL 409 (553)
T ss_pred EecCceEEEEccEEE
Confidence 555556666666664
No 37
>PLN02432 putative pectinesterase
Probab=95.76 E-value=0.14 Score=51.39 Aligned_cols=113 Identities=17% Similarity=0.316 Sum_probs=71.9
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCe-EEEe--------CCCeEEEeccccEEEEeE
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGAS-VHIA--------DGPCITIHFATNIIIHGI 174 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~-i~I~--------~G~gi~i~~a~NVIIrnL 174 (403)
|+.+||.. +..+++||=..|+ ..+.|.| .+|+||.|.+.. ..|. ..+.+.+ .++|++.+||
T Consensus 25 TIq~Aida~p~~~~~~~~I~I~~G~--Y~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~nl 101 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWVKPGI--YREKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRFL 101 (293)
T ss_pred CHHHHHhhccccCCceEEEEEeCce--eEEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEee
Confidence 67788853 2224444444564 3566766 589999999874 3332 1234555 6899999999
Q ss_pred EEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeeeeeeCCceEEEEcceecc
Q 015623 175 HIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTH 246 (403)
Q Consensus 175 ~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~ 246 (403)
+|++..+. ....-|+.+ .+.++-+.+|.|.-..|=|++ ....--+.+|++..
T Consensus 102 t~~Nt~g~----------------~~QAvAl~v-~gDr~~f~~c~~~G~QDTLy~---~~gr~yf~~c~I~G 153 (293)
T PLN02432 102 TIQNTFGS----------------SGKAVALRV-AGDRAAFYGCRILSYQDTLLD---DTGRHYYRNCYIEG 153 (293)
T ss_pred EEEeCCCC----------------CCceEEEEE-cCCcEEEEcceEecccceeEE---CCCCEEEEeCEEEe
Confidence 99985321 012334444 478999999999988887765 12344556666653
No 38
>PLN02773 pectinesterase
Probab=95.76 E-value=1.8 Score=44.01 Aligned_cols=167 Identities=12% Similarity=0.139 Sum_probs=94.2
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCe-EEEeCC----------------------Ce
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGAS-VHIADG----------------------PC 160 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~-i~I~~G----------------------~g 160 (403)
|+.+||.. +..+++||=..|+ ..+.|.| .+|+||.|++.. ..|... +.
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~--Y~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGV--YRQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCce--EEEEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 67888743 2234555545665 3466777 468999998873 333311 13
Q ss_pred EEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCC----------------
Q 015623 161 ITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQ---------------- 224 (403)
Q Consensus 161 i~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~---------------- 224 (403)
+.+ .++|++.+||+|++..+.+ ....-|+.+ .+..+-+.+|.|.-..
T Consensus 97 v~v-~a~~f~a~nlT~~Nt~~~~---------------~gQAvAl~v-~gDr~~f~~c~~~G~QDTL~~~~gr~yf~~c~ 159 (317)
T PLN02773 97 VIV-EGEDFIAENITFENSAPEG---------------SGQAVAIRV-TADRCAFYNCRFLGWQDTLYLHYGKQYLRDCY 159 (317)
T ss_pred EEE-ECCCeEEEeeEEEeCCCCC---------------CCcEEEEEe-cCccEEEEccEeecccceeEeCCCCEEEEeeE
Confidence 344 6899999999999864210 012334444 3677888888877543
Q ss_pred -CCeeeeeeCCceEEEEcceeccCCeeeecCCCCCccCCcceeEEEEeeEecCCC------cCCCcccCCCeEEEEccee
Q 015623 225 -DGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGL------VQRMPRCRQGYFHVVNNDY 297 (403)
Q Consensus 225 -DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~~hN~f~~n~------~~R~Pr~R~G~~Hv~NN~y 297 (403)
.|.+|.+.|.-.+-+.+|.|..-..+.+--++-.. .....-.-|+++.+.... -.| |.-.++.+-+.|.++
T Consensus 160 IeG~VDFIFG~g~a~Fe~c~i~s~~~g~ITA~~r~~-~~~~~GfvF~~c~it~~~~~~~~yLGR-pW~~~a~vVf~~t~l 237 (317)
T PLN02773 160 IEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKS-SQESTGYVFLRCVITGNGGSGYMYLGR-PWGPFGRVVFAYTYM 237 (317)
T ss_pred EeecccEEeeccEEEEEeeEEEEccCcEEECCCCCC-CCCCceEEEEccEEecCCCCcceeecC-CCCCCceEEEEeccc
Confidence 55666667777777888888532222222221110 011123455566653111 123 433467777777777
Q ss_pred e
Q 015623 298 T 298 (403)
Q Consensus 298 ~ 298 (403)
.
T Consensus 238 ~ 238 (317)
T PLN02773 238 D 238 (317)
T ss_pred C
Confidence 5
No 39
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=95.69 E-value=1 Score=48.79 Aligned_cols=166 Identities=15% Similarity=0.231 Sum_probs=100.9
Q ss_pred hHHHhhhc---CC----CeEEEEeeceEEEeCceeee---cCCcEEEeeCCeE-EEe------CC------CeEEEeccc
Q 015623 111 TLRHAVIQ---DE----PLWIIFNRDMVIKLNQELVM---NSHKTIDGRGASV-HIA------DG------PCITIHFAT 167 (403)
Q Consensus 111 tLr~av~~---~~----P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~i-~I~------~G------~gi~i~~a~ 167 (403)
|+.+||.. .. -|+||+=+.|+. ++.|.| .+|+||.|.|.+- .|+ +| +.+.+ .++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~~ 313 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYY--EEYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SGE 313 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeee--EEEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-ECC
Confidence 78888853 11 256666667764 466666 4799999998753 343 12 23444 689
Q ss_pred cEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEee-CCccEEEEeeeecCCC-----------------CCeee
Q 015623 168 NIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIF-SSQHIWIDHCSLSNCQ-----------------DGLID 229 (403)
Q Consensus 168 NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~-----------------DgliD 229 (403)
++|.+||.|++... + ...-|+-++ .+...-+.+|+|.-.. .|.+|
T Consensus 314 ~F~a~~it~~Ntag--~---------------~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVD 376 (538)
T PLN03043 314 RFVAVDVTFRNTAG--P---------------EKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVD 376 (538)
T ss_pred CEEEEeeEEEECCC--C---------------CCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccc
Confidence 99999999998531 1 123455554 4788889999988643 56677
Q ss_pred eeeCCceEEEEcceeccC-----CeeeecCCCCCccCCcceeEEEEeeEecCC------------CcCCCcccCCCeEEE
Q 015623 230 AIHGSTAITISNNYFTHH-----DKVMLLGHSDSYTQDKNMQATIAFNHFGEG------------LVQRMPRCRQGYFHV 292 (403)
Q Consensus 230 v~~gs~~VTISnn~f~~H-----~k~~LiG~sd~~~~d~~~~VT~~hN~f~~n------------~~~R~Pr~R~G~~Hv 292 (403)
.+-|.-.+-+++|.|.-- .+.++--++... .+...-+.|+++.+... --+| |.-.+..+-+
T Consensus 377 FIFG~a~avfq~c~i~~r~~~~~~~~~iTA~~r~~-~~~~tG~~~~~c~i~~~~~~~~~~~~~~~yLGR-pW~~ysr~v~ 454 (538)
T PLN03043 377 FIFGNAAAIFQNCNLYARKPMANQKNAFTAQGRTD-PNQNTGISIINCTIEAAPDLAMDPNSTMNFLGR-PWKPYSRTVY 454 (538)
T ss_pred eEeecceeeeeccEEEEecCCCCCCceEEecCCCC-CCCCceEEEEecEEecCCcccccccccceeccC-CCCCCceEEE
Confidence 777888888999998531 112222111111 11123466777766311 0134 4434677888
Q ss_pred Ecceee
Q 015623 293 VNNDYT 298 (403)
Q Consensus 293 ~NN~y~ 298 (403)
.|.++.
T Consensus 455 ~~s~i~ 460 (538)
T PLN03043 455 MQSYIG 460 (538)
T ss_pred EecccC
Confidence 888875
No 40
>PLN02665 pectinesterase family protein
Probab=95.68 E-value=1.2 Score=46.07 Aligned_cols=105 Identities=17% Similarity=0.230 Sum_probs=66.3
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCe-EEEeCC-----------CeEEEeccccEEE
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGAS-VHIADG-----------PCITIHFATNIII 171 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~-i~I~~G-----------~gi~i~~a~NVII 171 (403)
|+.+||.. +..++|||=..|+- .+.|.| .+++||.|++.. ..|... +.+.+ .+++++.
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~GvY--~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F~a 158 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGEY--NEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYFMA 158 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcEE--EEEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCeEE
Confidence 78888853 23356666666754 466777 478899999874 333311 24445 6899999
Q ss_pred EeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeee
Q 015623 172 HGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLID 229 (403)
Q Consensus 172 rnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliD 229 (403)
+||.|++..+.+++ ...| ...-|+.+ .+..+-+.+|.|.-..|=|.+
T Consensus 159 ~nitf~Nta~~~~~------~~~g----~QAVAl~v-~gDka~f~~C~f~G~QDTL~~ 205 (366)
T PLN02665 159 ANIIIKNSAPRPDG------KRKG----AQAVAMRI-SGDKAAFYNCRFIGFQDTLCD 205 (366)
T ss_pred EeeEEEeCCCCcCC------CCCC----cceEEEEE-cCCcEEEEcceeccccceeEe
Confidence 99999987542110 0001 23345554 368899999999876555544
No 41
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=95.66 E-value=0.13 Score=55.23 Aligned_cols=100 Identities=16% Similarity=0.293 Sum_probs=65.1
Q ss_pred hHHHhhhc-----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCeE-EEeC------C------CeEEEeccccE
Q 015623 111 TLRHAVIQ-----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGASV-HIAD------G------PCITIHFATNI 169 (403)
Q Consensus 111 tLr~av~~-----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~i-~I~~------G------~gi~i~~a~NV 169 (403)
|+.+||.. ...|++|+=+.|+. .+.|.| .+|+||.|.|.+- .|++ | +.+.+ .++++
T Consensus 239 TIq~AI~a~~~~~~~~r~vI~Ik~GvY--~E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~v-~~~~F 315 (529)
T PLN02170 239 TIGEALLSTSLESGGGRTVIYLKAGTY--HENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVAA-MGDGF 315 (529)
T ss_pred hHHHHHHhcccccCCceEEEEEeCCee--EEEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEEE-EcCCe
Confidence 78889853 22366666667763 466666 4799999998853 3432 1 13334 68999
Q ss_pred EEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeee
Q 015623 170 IIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLID 229 (403)
Q Consensus 170 IIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliD 229 (403)
+.+||.|++.... .....-|+.+ .+..+.+.+|.|.-..|=|.+
T Consensus 316 ~a~nitf~Ntag~---------------~~~QAVALrv-~gDr~~fy~C~f~GyQDTLy~ 359 (529)
T PLN02170 316 IARDITFVNSAGP---------------NSEQAVALRV-GSDKSVVYRCSVEGYQDSLYT 359 (529)
T ss_pred EEEeeEEEecCCC---------------CCCceEEEEe-cCCcEEEEeeeEeccCCccee
Confidence 9999999986311 0012344444 478889999999876655544
No 42
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=95.48 E-value=1.2 Score=49.35 Aligned_cols=166 Identities=16% Similarity=0.217 Sum_probs=99.3
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeeec---CCcEEEeeCCeEEE-eC------C------CeEEEeccccEE
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVMN---SHKTIDGRGASVHI-AD------G------PCITIHFATNII 170 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~i~I-~~------G------~gi~i~~a~NVI 170 (403)
|+.+||.. +..|+||+=+.|+ ..+.|.|. .|+||.|.|.+-+| .+ | +.+.+ .+++++
T Consensus 264 TIq~Av~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v-~g~~F~ 340 (670)
T PLN02217 264 TINEALNFVPKKKNTTFVVHIKAGI--YKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAI-VGDHFI 340 (670)
T ss_pred CHHHHHHhccccCCceEEEEEeCCc--eEEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEE-ECCCeE
Confidence 78888854 2335566555665 34667773 58899999875433 21 1 12334 689999
Q ss_pred EEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEee-CCccEEEEeeeecCCC-----------------CCeeeeee
Q 015623 171 IHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIF-SSQHIWIDHCSLSNCQ-----------------DGLIDAIH 232 (403)
Q Consensus 171 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~-----------------DgliDv~~ 232 (403)
.|||.|++.... ...-|+-++ .+...-+.+|.|.-.. .|.+|.+-
T Consensus 341 a~nitf~Ntag~-----------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 403 (670)
T PLN02217 341 AKNIGFENTAGA-----------------IKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLF 403 (670)
T ss_pred EEeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEe
Confidence 999999985311 123445554 4788889999887543 56677777
Q ss_pred CCceEEEEcceeccC-----CeeeecCCCCCccCCcceeEEEEeeEecCCC------------cCCCcccCCCeEEEEcc
Q 015623 233 GSTAITISNNYFTHH-----DKVMLLGHSDSYTQDKNMQATIAFNHFGEGL------------VQRMPRCRQGYFHVVNN 295 (403)
Q Consensus 233 gs~~VTISnn~f~~H-----~k~~LiG~sd~~~~d~~~~VT~~hN~f~~n~------------~~R~Pr~R~G~~Hv~NN 295 (403)
|.-.+-+++|.|.-- .+..+--++-. ..+...-..|+++.+...- -+| |.-.|..+-+.|.
T Consensus 404 G~a~avfq~C~I~~r~~~~~~~~~ITAqgr~-~~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGR-PW~~ysrvVf~~t 481 (670)
T PLN02217 404 GDAAAVFQNCTLLVRKPLLNQACPITAHGRK-DPRESTGFVLQGCTIVGEPDYLAVKETSKAYLGR-PWKEYSRTIIMNT 481 (670)
T ss_pred cCceEEEEccEEEEccCCCCCceeEecCCCC-CCCCCceEEEEeeEEecCccccccccccceeecc-CCCCCceEEEEec
Confidence 888888999998631 11111111100 0112234667777764210 123 4444677888888
Q ss_pred eee
Q 015623 296 DYT 298 (403)
Q Consensus 296 ~y~ 298 (403)
++.
T Consensus 482 ~l~ 484 (670)
T PLN02217 482 FIP 484 (670)
T ss_pred ccC
Confidence 765
No 43
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=95.37 E-value=0.19 Score=54.20 Aligned_cols=102 Identities=20% Similarity=0.231 Sum_probs=69.0
Q ss_pred eEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeeeeee-------
Q 015623 160 CITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIH------- 232 (403)
Q Consensus 160 gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~------- 232 (403)
++.++.++|+.++||+|..-.+ ...|||-+...+||-|+-|.|+.+.| +|-++-
T Consensus 263 ~~h~~~~~nl~~~nl~I~~~~~------------------~NtDG~d~~sc~NvlI~~~~fdtgDD-~I~iksg~~~~~~ 323 (542)
T COG5434 263 TVHPVDCDNLTFRNLTIDANRF------------------DNTDGFDPGSCSNVLIEGCRFDTGDD-CIAIKSGAGLDGK 323 (542)
T ss_pred EEeeecccCceecceEEECCCC------------------CCCCccccccceeEEEeccEEecCCc-eEEeecccCCccc
Confidence 4555789999999999984211 25799999999999999999998433 333322
Q ss_pred ----CCceEEEEcceeccCCeeeecCCCCCccCCcceeEEEEeeEecCCCcCCCccc
Q 015623 233 ----GSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRC 285 (403)
Q Consensus 233 ----gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~~hN~f~~n~~~R~Pr~ 285 (403)
-+.+|+|++|+|..-..+..+|+.... ....|++-.|.| .+ ..|--|+
T Consensus 324 ~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~g---gv~ni~ved~~~-~~-~d~GLRi 375 (542)
T COG5434 324 KGYGPSRNIVIRNCYFSSGHGGLVLGSEMGG---GVQNITVEDCVM-DN-TDRGLRI 375 (542)
T ss_pred ccccccccEEEecceecccccceEeeeecCC---ceeEEEEEeeee-cc-Ccceeee
Confidence 246899999999854444455543221 234677777888 34 3454454
No 44
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=95.29 E-value=0.21 Score=54.07 Aligned_cols=112 Identities=21% Similarity=0.284 Sum_probs=70.6
Q ss_pred hHHHhhhc-C-----CCeEEEEeeceEEEeCceeee---cCCcEEEeeCCe-EEEeCCC------------eEEEecccc
Q 015623 111 TLRHAVIQ-D-----EPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGAS-VHIADGP------------CITIHFATN 168 (403)
Q Consensus 111 tLr~av~~-~-----~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~-i~I~~G~------------gi~i~~a~N 168 (403)
|+.+||.. + ..|++|+=+.|+. ++.|.| .+|+|+.|.|.+ ..|.++. .+.+ .+++
T Consensus 237 TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~v-~~~~ 313 (539)
T PLN02995 237 TVQAAIDVAGRRKVTSGRFVIYVKRGIY--QENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAGI-EGLH 313 (539)
T ss_pred CHHHHHHhcccccCCCceEEEEEeCCEe--EEEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEEE-ECCC
Confidence 88888853 1 2255555556653 456666 479999999975 3443211 2334 6899
Q ss_pred EEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEee-CCccEEEEeeeecCCCCCeeeeeeCCceEEEEcceec
Q 015623 169 IIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIF-SSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFT 245 (403)
Q Consensus 169 VIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~ 245 (403)
++.+||+|++... . ..+-|+-+. .+....+.+|.|.-..|=|.+- +..--+.+|++.
T Consensus 314 F~a~nitf~Ntag--------------~---~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~---~~Rqyy~~C~I~ 371 (539)
T PLN02995 314 FIAKGITFRNTAG--------------P---AKGQAVALRSSSDLSIFYKCSIEGYQDTLMVH---SQRQFYRECYIY 371 (539)
T ss_pred eEEEeeEEEeCCC--------------C---CCCceEEEEEcCCceeEEcceEecccchhccC---CCceEEEeeEEe
Confidence 9999999998531 1 123455554 5789999999999877766541 223344455554
No 45
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=95.27 E-value=0.23 Score=53.50 Aligned_cols=99 Identities=17% Similarity=0.287 Sum_probs=63.1
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCeE-EEeC------C------CeEEEeccccEE
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGASV-HIAD------G------PCITIHFATNII 170 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~i-~I~~------G------~gi~i~~a~NVI 170 (403)
|+.+||.. +..+++|+=+.|+. ++.|.| .+|+||.|.|.+- .|++ | +.+.+ .+++++
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~~F~ 296 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGVY--LENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAV-SGRGFI 296 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCcee--EEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEE-ECCCeE
Confidence 77888843 22345555556654 466776 4689999998743 3321 1 13334 689999
Q ss_pred EEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEee-CCccEEEEeeeecCCCCCeee
Q 015623 171 IHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIF-SSQHIWIDHCSLSNCQDGLID 229 (403)
Q Consensus 171 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~DgliD 229 (403)
.+||.|++..+. ...-|+-++ .+...-+.+|.|.-..|=|.+
T Consensus 297 a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~ 339 (520)
T PLN02201 297 ARDITFQNTAGP-----------------EKHQAVALRSDSDLSVFYRCAMRGYQDTLYT 339 (520)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEeeeeeccCCeeEe
Confidence 999999986321 122344443 478899999999876665554
No 46
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=95.23 E-value=1.7 Score=47.41 Aligned_cols=115 Identities=19% Similarity=0.356 Sum_probs=77.2
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCe-EEEeC------C-------CeEEEeccccE
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGAS-VHIAD------G-------PCITIHFATNI 169 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~-i~I~~------G-------~gi~i~~a~NV 169 (403)
|+.+||.. +..|+||+=..|+. ++.+.| .+|+||.|.|.+ ..|++ | +.+.+ .++++
T Consensus 273 TIq~Av~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~v-~~~~F 349 (572)
T PLN02990 273 TINEALNAVPKANQKPFVIYIKQGVY--NEKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVAI-NGDHF 349 (572)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcee--EEEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEEE-EcCCE
Confidence 78888853 22355555556654 466767 478999999874 33431 1 12334 68999
Q ss_pred EEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEee-CCccEEEEeeeecCCC-----------------CCeeeee
Q 015623 170 IIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIF-SSQHIWIDHCSLSNCQ-----------------DGLIDAI 231 (403)
Q Consensus 170 IIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~-----------------DgliDv~ 231 (403)
+.|||.|++.... ...-|+-++ .+...-+.+|.|.-.. .|.+|.+
T Consensus 350 ~a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFI 412 (572)
T PLN02990 350 TAKNIGFENTAGP-----------------EGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFI 412 (572)
T ss_pred EEEeeEEEeCCCC-----------------CCCceEEEEEcCCcEEEEeeeEecccchhccCCCcEEEEeeEEecccceE
Confidence 9999999985311 123455554 5788899999987643 5667777
Q ss_pred eCCceEEEEcceec
Q 015623 232 HGSTAITISNNYFT 245 (403)
Q Consensus 232 ~gs~~VTISnn~f~ 245 (403)
-|.-.+-+++|.|.
T Consensus 413 FG~a~avf~~C~i~ 426 (572)
T PLN02990 413 FGDAKVVLQNCNIV 426 (572)
T ss_pred ccCceEEEEccEEE
Confidence 78778888999886
No 47
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=95.14 E-value=0.27 Score=52.66 Aligned_cols=98 Identities=17% Similarity=0.278 Sum_probs=63.7
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCeEE-EeCC------------CeEEEeccccEE
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGASVH-IADG------------PCITIHFATNII 170 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~i~-I~~G------------~gi~i~~a~NVI 170 (403)
|+.+||.+ +..+++|+=+.|+ .++.|.| .+|+||.|.|.+-+ |.++ +.+.+ .++++|
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v-~g~gF~ 287 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGV--YDEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVAS-NGDGFI 287 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCe--eEEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEE-EcCCeE
Confidence 78888853 2335555555665 3466777 47899999998533 3311 12333 689999
Q ss_pred EEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEee-CCccEEEEeeeecCCCCCee
Q 015623 171 IHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIF-SSQHIWIDHCSLSNCQDGLI 228 (403)
Q Consensus 171 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dgli 228 (403)
.+||.|++... + ..+-|+-++ .+...-+.+|.|.-..|=|.
T Consensus 288 A~nitf~Ntag--~---------------~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy 329 (509)
T PLN02488 288 GIDMCFRNTAG--P---------------AKGPAVALRVSGDMSVIYRCRIEGYQDALY 329 (509)
T ss_pred EEeeEEEECCC--C---------------CCCceEEEEecCCcEEEEcceeeccCccee
Confidence 99999998531 1 123455554 57899999999987655544
No 48
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=95.11 E-value=0.21 Score=54.06 Aligned_cols=116 Identities=19% Similarity=0.383 Sum_probs=73.0
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCeEEE-e------CCC------eEEEeccccEE
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGASVHI-A------DGP------CITIHFATNII 170 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~i~I-~------~G~------gi~i~~a~NVI 170 (403)
|+.+||.. +..|+|||=+.|+ .++.|.| .+|+||.|.|.+-+| + +|. .+.+ .+++++
T Consensus 250 TIq~Ai~a~P~~~~~r~vI~Ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v-~~~~F~ 326 (548)
T PLN02301 250 TVKEAVASAPDNSKTRYVIYVKKGT--YKENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAA-VGDGFI 326 (548)
T ss_pred cHHHHHHhhhhcCCceEEEEEeCce--eeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEE-ECCceE
Confidence 78888853 3346666666776 4466777 479999999975433 2 121 2333 689999
Q ss_pred EEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCe-----------------eeeeeC
Q 015623 171 IHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGL-----------------IDAIHG 233 (403)
Q Consensus 171 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~Dgl-----------------iDv~~g 233 (403)
.+||.|++... +. ....-|+.+ .+..+-+.+|.|.-..|=| +|.+-|
T Consensus 327 a~nitf~Ntag--~~-------------~~QAVAlrv-~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG 390 (548)
T PLN02301 327 AQDIWFQNTAG--PE-------------KHQAVALRV-SADQAVINRCRIDAYQDTLYAHSLRQFYRDSYITGTVDFIFG 390 (548)
T ss_pred EEeeEEEECCC--CC-------------CCceEEEEe-cCCcEEEEeeeeeeccccceecCCcEEEEeeEEEeccceecc
Confidence 99999998531 10 012334444 4788999999998765544 444445
Q ss_pred CceEEEEcceec
Q 015623 234 STAITISNNYFT 245 (403)
Q Consensus 234 s~~VTISnn~f~ 245 (403)
.-.+-+++|.|.
T Consensus 391 ~a~avfq~c~i~ 402 (548)
T PLN02301 391 NAAVVFQNCKIV 402 (548)
T ss_pred cceeEEeccEEE
Confidence 555555555553
No 49
>PLN02916 pectinesterase family protein
Probab=95.06 E-value=0.28 Score=52.56 Aligned_cols=100 Identities=17% Similarity=0.237 Sum_probs=64.1
Q ss_pred hHHHhhhc-------CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCeE-EEeC------CC------eEEEeccc
Q 015623 111 TLRHAVIQ-------DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGASV-HIAD------GP------CITIHFAT 167 (403)
Q Consensus 111 tLr~av~~-------~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~i-~I~~------G~------gi~i~~a~ 167 (403)
|+.+||.. +..|++|+=..|+.+ +.+.| .+|+||.|.|.+- .|.+ |. .+.+ .++
T Consensus 201 TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~ 277 (502)
T PLN02916 201 TINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGV-SGD 277 (502)
T ss_pred CHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEE-ECC
Confidence 78888843 234666666667544 66766 4689999998743 3331 21 3334 689
Q ss_pred cEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeee
Q 015623 168 NIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLID 229 (403)
Q Consensus 168 NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliD 229 (403)
+++.|||+|++.... .....-|+.+ .+...-+.+|.|.-..|=|.+
T Consensus 278 ~F~A~nitf~Ntag~---------------~~~QAVALrv-~~D~a~fy~C~f~G~QDTLy~ 323 (502)
T PLN02916 278 GFWARDITFENTAGP---------------HKHQAVALRV-SSDLSVFYRCSFKGYQDTLFV 323 (502)
T ss_pred CEEEEeeEEEeCCCC---------------CCCceEEEEE-cCCcEEEEeeeEeccCceeEe
Confidence 999999999985321 0013344444 478889999999876665554
No 50
>PLN02634 probable pectinesterase
Probab=95.05 E-value=0.45 Score=49.01 Aligned_cols=118 Identities=19% Similarity=0.249 Sum_probs=71.9
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCeEEEe-----------CC--------CeEEEe
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGASVHIA-----------DG--------PCITIH 164 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~i~I~-----------~G--------~gi~i~ 164 (403)
|+.+||.. +..+++|+=..|+ ..+.|.| .+|+||.|.|...+|. +| +.+.+
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V- 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGF--YREKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV- 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCce--EEEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-
Confidence 67777743 2234444444565 4466777 5789999998754432 11 13444
Q ss_pred ccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeeeeeeCCceEEEEccee
Q 015623 165 FATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYF 244 (403)
Q Consensus 165 ~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f 244 (403)
.+++++.+||+|++..+... .|.. ....-|+.+ .+.++-+.+|.|.-..|=|.+- ...--+.+|++
T Consensus 147 ~a~~F~a~niTf~Nta~~~~---------~g~~-~~QAVAl~v-~gDra~f~~C~f~G~QDTL~~~---~gR~yf~~CyI 212 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPM---------PGMQ-GWQAVAFRI-SGDKAFFFGCGFYGAQDTLCDD---AGRHYFKECYI 212 (359)
T ss_pred ECCCeEEEeCeEEeCCccCC---------CCCC-CCceEEEEe-cCCcEEEEEeEEecccceeeeC---CCCEEEEeeEE
Confidence 68999999999998754210 0110 023344444 4788999999999887777651 23444556665
Q ss_pred c
Q 015623 245 T 245 (403)
Q Consensus 245 ~ 245 (403)
.
T Consensus 213 e 213 (359)
T PLN02634 213 E 213 (359)
T ss_pred c
Confidence 5
No 51
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=95.04 E-value=0.3 Score=52.63 Aligned_cols=99 Identities=19% Similarity=0.273 Sum_probs=63.2
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCe-EEEeC------C------CeEEEeccccEE
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGAS-VHIAD------G------PCITIHFATNII 170 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~-i~I~~------G------~gi~i~~a~NVI 170 (403)
|+.+||.. +..+++|+=..|+.+ +.|.| .+|+||.|.|.+ ..|.+ | +.+.+ .+++++
T Consensus 232 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v-~a~~F~ 308 (530)
T PLN02933 232 TINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVGV-KGKGFI 308 (530)
T ss_pred CHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEEE-ECCCEE
Confidence 77778743 223455554556544 56666 468899999874 33321 1 23444 689999
Q ss_pred EEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEee-CCccEEEEeeeecCCCCCeee
Q 015623 171 IHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIF-SSQHIWIDHCSLSNCQDGLID 229 (403)
Q Consensus 171 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~DgliD 229 (403)
.+||+|++-... ...-|+-++ .+..+-+.+|.|.-..|=|.+
T Consensus 309 a~nitf~Ntag~-----------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~ 351 (530)
T PLN02933 309 AKDISFVNYAGP-----------------AKHQAVALRSGSDHSAFYRCEFDGYQDTLYV 351 (530)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEEcCCcEEEEEeEEEeccccccc
Confidence 999999985311 123344444 578899999999877665554
No 52
>PLN02304 probable pectinesterase
Probab=94.97 E-value=0.52 Score=48.89 Aligned_cols=118 Identities=20% Similarity=0.297 Sum_probs=75.5
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCeEE-EeCC------------CeEEEeccccEE
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGASVH-IADG------------PCITIHFATNII 170 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~i~-I~~G------------~gi~i~~a~NVI 170 (403)
|+.+||.. +..+++||=..|+ ..+.|.| .+|+||.|+|.+-+ |... +.+.+ .+++++
T Consensus 89 TIQ~AIdavP~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v-~a~~F~ 165 (379)
T PLN02304 89 TVQSAVDAVGNFSQKRNVIWINSGI--YYEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQV-FASNFI 165 (379)
T ss_pred CHHHHHhhCcccCCCcEEEEEeCeE--eEEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEE-ECCCeE
Confidence 78888853 2335555555665 3467777 58999999987432 3211 13344 689999
Q ss_pred EEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEee-CCccEEEEeeeecCCCCCeeeeeeCCceEEEEcceecc
Q 015623 171 IHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIF-SSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTH 246 (403)
Q Consensus 171 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~ 246 (403)
.+||+|++..+.. .+ | ..+.-|+-+. .+..+-+.+|.|.-..|=|.+- ...--+.+|++..
T Consensus 166 a~nITf~Nta~~~------~~---g---~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~---~gR~Yf~~CyIeG 227 (379)
T PLN02304 166 AKNISFMNVAPIP------KP---G---DVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDD---RGRHYFKDCYIQG 227 (379)
T ss_pred EEeeEEEecCCCC------CC---C---CCCccEEEEEecCCcEEEEeceEecccceeEeC---CCCEEEEeeEEcc
Confidence 9999999875421 01 1 1123345443 4899999999999988888762 2344566777663
No 53
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=94.92 E-value=0.33 Score=53.16 Aligned_cols=100 Identities=13% Similarity=0.287 Sum_probs=64.2
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCeEE-EeC------C------CeEEEeccccEE
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGASVH-IAD------G------PCITIHFATNII 170 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~i~-I~~------G------~gi~i~~a~NVI 170 (403)
|+.+||.. ...++||+=..|+.+ +.|.| .+|+||.|.|.+-+ |++ | +.+.+ .+++++
T Consensus 299 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 375 (596)
T PLN02745 299 TISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVA-LGEGFM 375 (596)
T ss_pred cHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEE-EcCCEE
Confidence 78888854 233566665567544 56777 36899999998533 332 1 12334 689999
Q ss_pred EEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeee
Q 015623 171 IHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLID 229 (403)
Q Consensus 171 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliD 229 (403)
.+||.|++... + .....-|+.+ .+...-+.+|.|.-..|=|.+
T Consensus 376 a~nitf~Ntag--~-------------~~~QAVAl~v-~~Dr~~f~~c~~~G~QDTLy~ 418 (596)
T PLN02745 376 AKSMGFRNTAG--P-------------EKHQAVAIRV-QSDRSIFLNCRFEGYQDTLYA 418 (596)
T ss_pred EEeeEEEECCC--C-------------CCCceEEEEE-cCCcEEEEeeEEeeccccccc
Confidence 99999998531 1 0012344444 478999999999877665544
No 54
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=94.84 E-value=0.57 Score=47.86 Aligned_cols=132 Identities=22% Similarity=0.371 Sum_probs=76.4
Q ss_pred ceeeecCCcEEEeeCCeEEEeC---CCeEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEee-CCc
Q 015623 136 QELVMNSHKTIDGRGASVHIAD---GPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIF-SSQ 211 (403)
Q Consensus 136 ~~L~i~snkTI~G~ga~i~I~~---G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~ 211 (403)
..++|+.-+|+-|. .++.+.+ |.-+++ .+.++|||+|++|+.-. ....-+-+|-+. .++
T Consensus 45 g~~vInr~l~l~ge-~ga~l~g~g~G~~vtv-~aP~~~v~Gl~vr~sg~---------------~lp~m~agI~v~~~at 107 (408)
T COG3420 45 GNFVINRALTLRGE-NGAVLDGGGKGSYVTV-AAPDVIVEGLTVRGSGR---------------SLPAMDAGIFVGRTAT 107 (408)
T ss_pred ccEEEccceeeccc-cccEEecCCcccEEEE-eCCCceeeeEEEecCCC---------------CcccccceEEeccCcc
Confidence 45666666666666 2233332 335777 79999999999995311 011223445442 466
Q ss_pred cEEEEeeeecCCCCCeeeeeeCCceEEEEcceec-----------------cCCeeeecCCCCCccCCcceeEEEEeeEe
Q 015623 212 HIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFT-----------------HHDKVMLLGHSDSYTQDKNMQATIAFNHF 274 (403)
Q Consensus 212 nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~-----------------~H~k~~LiG~sd~~~~d~~~~VT~~hN~f 274 (403)
.--|.||.+-.+.-|.. .+++..+-|--|.+. +-..+...|..-++..|...--|=+||.|
T Consensus 108 ~A~Vr~N~l~~n~~Gi~--l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S~~~~~ 185 (408)
T COG3420 108 GAVVRHNDLIGNSFGIY--LHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTSQHNVF 185 (408)
T ss_pred cceEEcccccccceEEE--EeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEccccccee
Confidence 66777777766666652 245555555555543 12234444444455566655556688888
Q ss_pred cCCCcCCCcccCCCe
Q 015623 275 GEGLVQRMPRCRQGY 289 (403)
Q Consensus 275 ~~n~~~R~Pr~R~G~ 289 (403)
. + .|+-.+|||.
T Consensus 186 ~-g--nr~~~~Rygv 197 (408)
T COG3420 186 K-G--NRFRDLRYGV 197 (408)
T ss_pred c-c--cchhheeeeE
Confidence 4 2 4777788874
No 55
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=94.78 E-value=0.35 Score=52.32 Aligned_cols=100 Identities=16% Similarity=0.287 Sum_probs=64.5
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCeE-EEeCC------------CeEEEeccccEE
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGASV-HIADG------------PCITIHFATNII 170 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~i-~I~~G------------~gi~i~~a~NVI 170 (403)
|+.+||.. +..|+|||=..|+. .+.+.| .+|+||.|.|.+- .|.+. +.+.+ .+++++
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~GvY--~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 322 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGVY--KENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAV-SGRGFI 322 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCee--eEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEE-EcCCeE
Confidence 67788853 33466666666753 455666 4799999998743 33321 12333 689999
Q ss_pred EEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeee
Q 015623 171 IHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLID 229 (403)
Q Consensus 171 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliD 229 (403)
.+||.|++... + . ....-|+.+ .+.++-+.+|.|.-..|=|.+
T Consensus 323 a~nit~~Ntag--~------------~-~~QAVAl~v-~~D~~~fy~C~~~G~QDTLy~ 365 (537)
T PLN02506 323 ARDITFRNTAG--P------------Q-NHQAVALRV-DSDQSAFYRCSMEGYQDTLYA 365 (537)
T ss_pred EEeeEEEeCCC--C------------C-CCceEEEEe-cCCcEEEEcceeeccccccee
Confidence 99999998531 1 0 023344555 488999999999877666554
No 56
>PLN02314 pectinesterase
Probab=94.69 E-value=0.27 Score=53.66 Aligned_cols=115 Identities=21% Similarity=0.329 Sum_probs=73.4
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCeEE-EeC------C------CeEEEeccccEE
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGASVH-IAD------G------PCITIHFATNII 170 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~i~-I~~------G------~gi~i~~a~NVI 170 (403)
|+.+||.. +..|+||+=+.|+. .+.+.| .+|+|+.|.|.+-+ |.+ | +.+.+ .+++++
T Consensus 292 TI~~Av~a~p~~~~~r~vI~ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v-~~~~F~ 368 (586)
T PLN02314 292 TINEAVASIPKKSKSRFVIYVKEGTY--VENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAA-AGKGFI 368 (586)
T ss_pred CHHHHHhhccccCCceEEEEEcCceE--EEEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEE-EcCCeE
Confidence 78888853 33466666666763 356666 46899999987433 331 1 12334 689999
Q ss_pred EEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEee-CCccEEEEeeeecCCCCCe-----------------eeeee
Q 015623 171 IHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIF-SSQHIWIDHCSLSNCQDGL-----------------IDAIH 232 (403)
Q Consensus 171 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dgl-----------------iDv~~ 232 (403)
.|||.|++.... ...-|+-++ ++...-+.+|.|.-..|=| +|.+-
T Consensus 369 a~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIF 431 (586)
T PLN02314 369 AKDMGFINTAGA-----------------AKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSNRQFYRDCDITGTIDFIF 431 (586)
T ss_pred EEeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeEEEeccchheeCCCCEEEEeeEEEeccceec
Confidence 999999985311 123445554 5788899999998765544 45555
Q ss_pred CCceEEEEcceec
Q 015623 233 GSTAITISNNYFT 245 (403)
Q Consensus 233 gs~~VTISnn~f~ 245 (403)
|.-.+-+++|.|.
T Consensus 432 G~a~avf~~c~i~ 444 (586)
T PLN02314 432 GNAAVVFQNCNIQ 444 (586)
T ss_pred cCceeeeeccEEE
Confidence 5555556666653
No 57
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=94.68 E-value=0.33 Score=53.03 Aligned_cols=116 Identities=16% Similarity=0.258 Sum_probs=74.7
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCeEE-EeC------C------CeEEEeccccEE
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGASVH-IAD------G------PCITIHFATNII 170 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~i~-I~~------G------~gi~i~~a~NVI 170 (403)
|+.+||.. +..|+||+=+.|+ ..+.+.| .+|+||.|.|.+-+ |++ | +.+.+ .+++++
T Consensus 289 TI~~Av~a~p~~~~~r~vI~ik~Gv--Y~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v-~~~~F~ 365 (587)
T PLN02313 289 TVAAAVAAAPEKSNKRFVIHIKAGV--YRENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAA-VGERFL 365 (587)
T ss_pred cHHHHHHhccccCCceEEEEEeCce--eEEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEE-ECCCeE
Confidence 77888853 2335666656675 3466666 36899999988533 331 2 12333 579999
Q ss_pred EEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCC-----------------CCeeeeeeC
Q 015623 171 IHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQ-----------------DGLIDAIHG 233 (403)
Q Consensus 171 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~-----------------DgliDv~~g 233 (403)
.|||.|++... + . ....-|+.+ ++...-+-+|.|.-.. .|.+|.+-|
T Consensus 366 a~~itf~Ntag--~------------~-~~QAvAlrv-~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG 429 (587)
T PLN02313 366 ARDITFQNTAG--P------------S-KHQAVALRV-GSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFG 429 (587)
T ss_pred EEeeEEEeCCC--C------------C-CCceEEEEe-cCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceecc
Confidence 99999998631 1 0 012334444 5788889999988643 556666666
Q ss_pred CceEEEEcceec
Q 015623 234 STAITISNNYFT 245 (403)
Q Consensus 234 s~~VTISnn~f~ 245 (403)
.-.+-+++|.|.
T Consensus 430 ~a~avfq~c~i~ 441 (587)
T PLN02313 430 NAAAVLQDCDIN 441 (587)
T ss_pred ceeEEEEccEEE
Confidence 667777777775
No 58
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=94.67 E-value=0.41 Score=52.12 Aligned_cols=115 Identities=19% Similarity=0.317 Sum_probs=72.1
Q ss_pred hHHHhhhc-------CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCe-EEEeC------C------CeEEEeccc
Q 015623 111 TLRHAVIQ-------DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGAS-VHIAD------G------PCITIHFAT 167 (403)
Q Consensus 111 tLr~av~~-------~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~-i~I~~------G------~gi~i~~a~ 167 (403)
|+.+||.. +..++||+=+.|+. ++.|.| .+|+||.|.|.+ ..|.+ | +.+.+ .++
T Consensus 264 TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v-~~~ 340 (566)
T PLN02713 264 TINDAVAAAPNNTDGSNGYFVIYVTAGVY--EEYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAV-VGQ 340 (566)
T ss_pred CHHHHHHhhhcccCCCCceEEEEEcCcEE--EEEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEE-ECC
Confidence 77888853 12255666566764 366766 578899999874 33431 2 23445 689
Q ss_pred cEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEee-CCccEEEEeeeecCCCCCe-----------------ee
Q 015623 168 NIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIF-SSQHIWIDHCSLSNCQDGL-----------------ID 229 (403)
Q Consensus 168 NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dgl-----------------iD 229 (403)
+++.+||+|++.... ...-|+-++ .+...-+.+|.|.-..|=| +|
T Consensus 341 ~F~a~nitf~Ntag~-----------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVD 403 (566)
T PLN02713 341 NFVAVNITFRNTAGP-----------------AKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVD 403 (566)
T ss_pred CeEEEeeEEEeCCCC-----------------CCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccc
Confidence 999999999985311 122344443 5788889999988765554 44
Q ss_pred eeeCCceEEEEcceec
Q 015623 230 AIHGSTAITISNNYFT 245 (403)
Q Consensus 230 v~~gs~~VTISnn~f~ 245 (403)
.+-|.-.+-+++|.|.
T Consensus 404 FIFG~a~avfq~C~i~ 419 (566)
T PLN02713 404 FIFGNAAVVFQNCNLY 419 (566)
T ss_pred eecccceEEEeccEEE
Confidence 4445555555555553
No 59
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=94.64 E-value=0.8 Score=46.83 Aligned_cols=94 Identities=17% Similarity=0.217 Sum_probs=65.9
Q ss_pred eeeecCCcEEEeeCCeEEEeCCCeEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEE
Q 015623 137 ELVMNSHKTIDGRGASVHIADGPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWID 216 (403)
Q Consensus 137 ~L~i~snkTI~G~ga~i~I~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWID 216 (403)
-|.+....|-++.-.+--|-..-||.+.++..+.|..-+|.+-.. + +...-++||++..++..-|-
T Consensus 99 gI~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~-----~---------r~~~rGnGI~vyNa~~a~V~ 164 (408)
T COG3420 99 GIFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLAD-----L---------RVAERGNGIYVYNAPGALVV 164 (408)
T ss_pred eEEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccc-----c---------chhhccCceEEEcCCCcEEE
Confidence 344455555444422211222347888899999999999985421 1 22357899999999999999
Q ss_pred eeeecCCCCCeeeeeeCCceEEEEcceecc
Q 015623 217 HCSLSNCQDGLIDAIHGSTAITISNNYFTH 246 (403)
Q Consensus 217 Hcs~s~~~DgliDv~~gs~~VTISnn~f~~ 246 (403)
-+.+|...||... .-|+.-+|+.|.|++
T Consensus 165 ~ndisy~rDgIy~--~~S~~~~~~gnr~~~ 192 (408)
T COG3420 165 GNDISYGRDGIYS--DTSQHNVFKGNRFRD 192 (408)
T ss_pred cCccccccceEEE--cccccceecccchhh
Confidence 9999999999865 456777777777764
No 60
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=94.58 E-value=0.41 Score=52.35 Aligned_cols=115 Identities=18% Similarity=0.315 Sum_probs=72.6
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCc-eeee---cCCcEEEeeCCe-EEEeCCC------------eEEEeccccE
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQ-ELVM---NSHKTIDGRGAS-VHIADGP------------CITIHFATNI 169 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~-~L~i---~snkTI~G~ga~-i~I~~G~------------gi~i~~a~NV 169 (403)
|+.+||.. +..|+||+=+.|+.+ + .|.| .+|+||.|.|.+ ..|+++. .+.+ .++++
T Consensus 286 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v-~~~~F 362 (587)
T PLN02484 286 TISEAIKKAPEHSSRRTIIYVKAGRYE--ENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAA-TGAGF 362 (587)
T ss_pred cHHHHHHhccccCCCcEEEEEeCCEEE--EEEEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEE-EcCCE
Confidence 78888853 334666666677644 4 3666 478999999884 3344321 2333 68999
Q ss_pred EEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEee-CCccEEEEeeeecCCCCCe-----------------eeee
Q 015623 170 IIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIF-SSQHIWIDHCSLSNCQDGL-----------------IDAI 231 (403)
Q Consensus 170 IIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dgl-----------------iDv~ 231 (403)
+.|||.|++..+. ...-|+-++ .+.+.-+.+|.|.-..|=| +|.+
T Consensus 363 ~a~~itf~Ntag~-----------------~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFI 425 (587)
T PLN02484 363 IARDMTFENWAGP-----------------AKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFI 425 (587)
T ss_pred EEEeeEEEECCCC-----------------CCCceEEEEecCCcEEEEeeeEeccCcccccCCCcEEEEecEEEecccee
Confidence 9999999985321 122344443 5788899999998765544 4444
Q ss_pred eCCceEEEEcceec
Q 015623 232 HGSTAITISNNYFT 245 (403)
Q Consensus 232 ~gs~~VTISnn~f~ 245 (403)
-|.-.+-+++|.|.
T Consensus 426 FG~a~avfq~C~i~ 439 (587)
T PLN02484 426 FGNAAVVLQNCSIY 439 (587)
T ss_pred cccceeEEeccEEE
Confidence 55555555555553
No 61
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=94.54 E-value=0.28 Score=46.15 Aligned_cols=118 Identities=18% Similarity=0.190 Sum_probs=67.4
Q ss_pred eCCCeEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCC-cEEee-CCccEEEEeeeecCCCCCeeee---
Q 015623 156 ADGPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGD-GVSIF-SSQHIWIDHCSLSNCQDGLIDA--- 230 (403)
Q Consensus 156 ~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~D-aIsi~-gs~nVWIDHcs~s~~~DgliDv--- 230 (403)
.++..|.|.+++||+|.|..|........ ....| .|.+. ++++|=|-+|-|.......+--
T Consensus 73 ~~~Dai~i~~~~nVWIDH~sfs~~~~~~~--------------~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d 138 (200)
T PF00544_consen 73 SDGDAISIDNSSNVWIDHCSFSWGNFECN--------------SDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSD 138 (200)
T ss_dssp CS--SEEEESTEEEEEES-EEEETTS-GG--------------GSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCT
T ss_pred cCCCeEEEEecccEEEeccEEeccccccc--------------cccCCceEEEEeCCceEEEEchhccccccccccCCCC
Confidence 34557999999999999999997621100 01133 35664 5788888888887653333221
Q ss_pred ---eeCCceEEEEcceeccCC-eeeecCCCCCccCCcceeEEEEeeEecCCCcCCCcccCC-CeEEEEccee
Q 015623 231 ---IHGSTAITISNNYFTHHD-KVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQ-GYFHVVNNDY 297 (403)
Q Consensus 231 ---~~gs~~VTISnn~f~~H~-k~~LiG~sd~~~~d~~~~VT~~hN~f~~n~~~R~Pr~R~-G~~Hv~NN~y 297 (403)
......||+.+|+|.+.. +..++.. -++-+.+|+|- +..+..=.+|. +.+-+-||||
T Consensus 139 ~~~~~~~~~vT~hhN~f~~~~~R~P~~r~---------G~~Hv~NN~~~-~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 139 SNSTDRGLRVTFHHNYFANTNSRNPRVRF---------GYVHVYNNYYY-NWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp TCGGGTTEEEEEES-EEEEEEE-TTEECS---------CEEEEES-EEE-EECSESEEEETTEEEEEES-EE
T ss_pred CccccCCceEEEEeEEECchhhCCCcccc---------cEEEEEEeeeE-CCCCEEEEccCCeEEEEECcCC
Confidence 122369999999997633 3334322 15777888883 44444433443 4788888886
No 62
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=94.32 E-value=3.3 Score=43.62 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=64.9
Q ss_pred hHHHhhhc-----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCC---eEEEeCC---------------------
Q 015623 111 TLRHAVIQ-----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGA---SVHIADG--------------------- 158 (403)
Q Consensus 111 tLr~av~~-----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga---~i~I~~G--------------------- 158 (403)
|+.+||.. ...+++||=..|+- ++.|.| .+++||.|.|. .+.|...
T Consensus 96 TIQaAIdAa~~~~~~~r~~I~Ik~GvY--~EkV~Ip~~kp~ItL~G~G~~~~~TvIt~~~~~~~~~~~~~~~~~~~g~~~ 173 (422)
T PRK10531 96 TVQAAVDAAIAKRTNKRQYIAVMPGTY--QGTVYVPAAAPPITLYGTGEKPIDVKIGLALDGEMSPADWRANVNPRGKYM 173 (422)
T ss_pred CHHHHHhhccccCCCceEEEEEeCcee--EEEEEeCCCCceEEEEecCCCCCceEEEecCcccccccccccccccccccc
Confidence 67788863 22355555555653 466777 57999999764 3455422
Q ss_pred -------------------------CeEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEee-CCcc
Q 015623 159 -------------------------PCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIF-SSQH 212 (403)
Q Consensus 159 -------------------------~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~n 212 (403)
+.+.+ .+++++.+||+|++..+.+. + ....-|+-+. .+..
T Consensus 174 ~~~p~~y~~d~~~~~~~~~~gT~~SATv~v-~ad~F~a~NLTf~Ntag~~~----------~---~~~~QAVALrv~GDr 239 (422)
T PRK10531 174 PGKPAWYMYDSCQSKRAATIGTLCSAVFWS-QNNGLQLQNLTIENTLGDSV----------D---AGNHPAVALRTDGDK 239 (422)
T ss_pred ccccccccccccccccCCCcCceeeEEEEE-ECCCEEEEeeEEEeCCCCCC----------C---CCcceeEEEEEcCCc
Confidence 01223 67999999999998653100 0 0122344443 4789
Q ss_pred EEEEeeeecCCCCCeee
Q 015623 213 IWIDHCSLSNCQDGLID 229 (403)
Q Consensus 213 VWIDHcs~s~~~DgliD 229 (403)
+.+.+|.|.-..|=|..
T Consensus 240 a~fy~C~flG~QDTLy~ 256 (422)
T PRK10531 240 VQIENVNILGRQDTFFV 256 (422)
T ss_pred EEEEeeEEecccceeee
Confidence 99999999888887765
No 63
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=94.05 E-value=0.63 Score=46.65 Aligned_cols=114 Identities=14% Similarity=0.227 Sum_probs=66.5
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeeec---CCcEEEeeCCe-EEEeCC------------CeEEEeccccEE
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVMN---SHKTIDGRGAS-VHIADG------------PCITIHFATNII 170 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i~---snkTI~G~ga~-i~I~~G------------~gi~i~~a~NVI 170 (403)
|+.+||.. +..+++||=..|+-+ +.|.|. +++||.|.+.. ..|.+. +.+.+ .+++++
T Consensus 14 TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v-~a~~f~ 90 (298)
T PF01095_consen 14 TIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSV-NADDFT 90 (298)
T ss_dssp SHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-E
T ss_pred CHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEeccccccccccccccccc-ccccee
Confidence 67888863 334566666667544 667773 69999999873 334321 24555 689999
Q ss_pred EEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeeeeeeCCceEEEEcceecc
Q 015623 171 IHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTH 246 (403)
Q Consensus 171 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~ 246 (403)
++||+|++... . .....-|+.+. ++++.+.+|.|.-..|=|.. .+...-+.+|++..
T Consensus 91 ~~nit~~Nt~g--------------~-~~~qAvAl~~~-~d~~~f~~c~~~g~QDTL~~---~~~r~y~~~c~IeG 147 (298)
T PF01095_consen 91 AENITFENTAG--------------P-SGGQAVALRVS-GDRAAFYNCRFLGYQDTLYA---NGGRQYFKNCYIEG 147 (298)
T ss_dssp EEEEEEEEHCS--------------G-SG----SEEET--TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEE
T ss_pred eeeeEEecCCC--------------C-cccceeeeeec-CCcEEEEEeEEccccceeee---ccceeEEEeeEEEe
Confidence 99999998531 1 01244677774 68899999999999998765 23456667887763
No 64
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=94.03 E-value=0.57 Score=51.03 Aligned_cols=114 Identities=19% Similarity=0.323 Sum_probs=70.9
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCeEE-Ee------CC------CeEEEeccccEE
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGASVH-IA------DG------PCITIHFATNII 170 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~i~-I~------~G------~gi~i~~a~NVI 170 (403)
|+.+||.. +..++|||=..|+. .+.+.| ..|+||.|.|.+-+ |. +| +.+.+ .+++++
T Consensus 272 tI~~Av~a~p~~~~~~~vI~ik~GvY--~E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v-~~~~f~ 348 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYVKKGVY--FENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV-FGKGFM 348 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCce--EEEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE-ECCCeE
Confidence 77778753 23355555556764 366666 46889999987433 32 12 13334 689999
Q ss_pred EEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEee-CCccEEEEeeeecCCCCC-----------------eeeeee
Q 015623 171 IHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIF-SSQHIWIDHCSLSNCQDG-----------------LIDAIH 232 (403)
Q Consensus 171 IrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~Dg-----------------liDv~~ 232 (403)
.|||.|++... . ...-|+-+. .+..+-+.+|.|.-..|= .+|.+-
T Consensus 349 a~~itf~Ntag--------------~---~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIF 411 (565)
T PLN02468 349 ARDMGFRNTAG--------------P---IKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQRQFYRECNIYGTVDFIF 411 (565)
T ss_pred EEEEEEEeCCC--------------C---CCCceEEEEEcCCcEEEEEeEEEeccchhccCCCceEEEeeEEecccceee
Confidence 99999998531 1 122344443 578899999999876554 445555
Q ss_pred CCceEEEEccee
Q 015623 233 GSTAITISNNYF 244 (403)
Q Consensus 233 gs~~VTISnn~f 244 (403)
|.-.+-+++|.|
T Consensus 412 G~a~avfq~c~i 423 (565)
T PLN02468 412 GNSAVVFQNCNI 423 (565)
T ss_pred ccceEEEeccEE
Confidence 555555555555
No 65
>PLN02497 probable pectinesterase
Probab=93.72 E-value=1.5 Score=44.74 Aligned_cols=119 Identities=14% Similarity=0.236 Sum_probs=73.3
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCCe-EEEe--------CCCeEEEeccccEEEEeE
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGAS-VHIA--------DGPCITIHFATNIIIHGI 174 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga~-i~I~--------~G~gi~i~~a~NVIIrnL 174 (403)
|+.+||.. +..+++|+=..|+ .++.|.| .+++||.|+|.+ ..|. +-+.+.+ .+++++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G~--Y~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAGL--YREKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCcE--EEEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEcc
Confidence 67777743 2334555545564 3466766 589999999873 2332 1124555 7899999999
Q ss_pred EEeeeecCCCCcccCCCCCCCCCCCCCCCcEEee-CCccEEEEeeeecCCCCCeeeeeeCCceEEEEcceec
Q 015623 175 HIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIF-SSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFT 245 (403)
Q Consensus 175 ~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~-gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~ 245 (403)
+|++..+... .+. ...+.-|+-+. .+.++-+.+|.|.-..|=|.+- ...--+.+|++.
T Consensus 123 T~~Nt~~~~~---------~~~-~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~Ie 181 (331)
T PLN02497 123 TFANSYNFPS---------KGN-KNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDS---DGRHYFKRCTIQ 181 (331)
T ss_pred EEEeCCCCcc---------ccC-CCCCcceEEEEecCCcEEEEeeEEeccccceeeC---CCcEEEEeCEEE
Confidence 9998643100 000 00122355544 5789999999999988888651 234455566665
No 66
>PLN02671 pectinesterase
Probab=93.43 E-value=1.4 Score=45.44 Aligned_cols=117 Identities=17% Similarity=0.203 Sum_probs=72.0
Q ss_pred hHHHhhhc----CCCeEEEEeeceEEEeCceeee---cCCcEEEeeCC---eEEEeC----------C--------CeEE
Q 015623 111 TLRHAVIQ----DEPLWIIFNRDMVIKLNQELVM---NSHKTIDGRGA---SVHIAD----------G--------PCIT 162 (403)
Q Consensus 111 tLr~av~~----~~P~~IvF~~~g~I~l~~~L~i---~snkTI~G~ga---~i~I~~----------G--------~gi~ 162 (403)
|+.+||.. +..+++|+=..|+ ..+.|.| .+++||.|.|. ...|.. | +.+.
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~Gv--Y~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGI--YREKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCce--EEEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 67777743 2224444444564 4466777 57899999874 344541 1 1233
Q ss_pred EeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeeeeeeCCceEEEEcc
Q 015623 163 IHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNN 242 (403)
Q Consensus 163 i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn 242 (403)
+ .+++++.+||+|++..+..+ |. .....-|+.+ .+.++-+.+|.|.-..|=|++- ...--+.+|
T Consensus 151 v-~a~~F~a~nitfeNt~~~~~----------g~-~~~QAVALrv-~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~C 214 (359)
T PLN02671 151 I-ESDYFCATGITFENTVVAEP----------GG-QGMQAVALRI-SGDKAFFYKVRVLGAQDTLLDE---TGSHYFYQC 214 (359)
T ss_pred E-ECCceEEEeeEEEcCCCCCC----------CC-CCccEEEEEE-cCccEEEEcceEeccccccEeC---CCcEEEEec
Confidence 4 68999999999998642111 10 0123445555 4789999999999888887752 233455566
Q ss_pred eec
Q 015623 243 YFT 245 (403)
Q Consensus 243 ~f~ 245 (403)
++.
T Consensus 215 yIe 217 (359)
T PLN02671 215 YIQ 217 (359)
T ss_pred EEE
Confidence 665
No 67
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=91.63 E-value=0.84 Score=49.41 Aligned_cols=133 Identities=16% Similarity=0.215 Sum_probs=84.9
Q ss_pred CCCeEEEEeeceEEEeCc------e---ee-e-cCCcEEEeeCCe-EEEeCCCeEEEeccccEEEEeEEEeeeecCCCCc
Q 015623 119 DEPLWIIFNRDMVIKLNQ------E---LV-M-NSHKTIDGRGAS-VHIADGPCITIHFATNIIIHGIHIHDCKKAGNGN 186 (403)
Q Consensus 119 ~~P~~IvF~~~g~I~l~~------~---L~-i-~snkTI~G~ga~-i~I~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~ 186 (403)
..|+.|.|...-.+.+.. + +. + -+++||.+..-. -++.+-.||.+..++||.|.+.+|..
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdt-------- 307 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDT-------- 307 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEec--------
Confidence 578889888765555431 1 11 1 355555555321 01112237888889999999999973
Q ss_pred ccCCCCCCCCCCCCCCCcEEee------------CCccEEEEeeeecCCCCCeeeeee---CCceEEEEcceeccCCeee
Q 015623 187 IRDSPEHSGWWDASDGDGVSIF------------SSQHIWIDHCSLSNCQDGLIDAIH---GSTAITISNNYFTHHDKVM 251 (403)
Q Consensus 187 i~~~~~~~g~~~~~~~DaIsi~------------gs~nVWIDHcs~s~~~DgliDv~~---gs~~VTISnn~f~~H~k~~ 251 (403)
..|+|.+. -+++|||-||.|+.++-+++...+ +-.+|++-+|.|.+-+.+.
T Consensus 308 --------------gDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GL 373 (542)
T COG5434 308 --------------GDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGL 373 (542)
T ss_pred --------------CCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCccee
Confidence 23444432 257899999999998888876443 4579999999999977777
Q ss_pred ecCCCCCccCCcceeEEEEeeEe
Q 015623 252 LLGHSDSYTQDKNMQATIAFNHF 274 (403)
Q Consensus 252 LiG~sd~~~~d~~~~VT~~hN~f 274 (403)
-|...+... -..-+|+|+-|.-
T Consensus 374 Rikt~~~~g-G~v~nI~~~~~~~ 395 (542)
T COG5434 374 RIKTNDGRG-GGVRNIVFEDNKM 395 (542)
T ss_pred eeeeecccc-eeEEEEEEecccc
Confidence 776655432 1123455554444
No 68
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=88.50 E-value=1.7 Score=45.66 Aligned_cols=116 Identities=20% Similarity=0.238 Sum_probs=54.3
Q ss_pred CCCCcEEeeC------CccEEEEeeeecCC--CCCeeeeeeCCceEEEEcceeccCCeeeecCCCCCccCCcceeEEEEe
Q 015623 200 SDGDGVSIFS------SQHIWIDHCSLSNC--QDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAF 271 (403)
Q Consensus 200 ~~~DaIsi~g------s~nVWIDHcs~s~~--~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~~h 271 (403)
.++.+|.|-. .++.-|.|+-|..| .-|.|+++ |..-||.+|.|.+..-.+-+=|.. ..|+..
T Consensus 182 NggEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~EIISvK--S~~N~ir~Ntf~es~G~ltlRHGn--------~n~V~g 251 (425)
T PF14592_consen 182 NGGETIRIGTSHSSMSDSNTTVENNLFERCDGEVEIISVK--SSDNTIRNNTFRESQGSLTLRHGN--------RNTVEG 251 (425)
T ss_dssp S---SEEE-SSTT-B-----EEES-EEEEE-SSSEEEEEE--SBT-EEES-EEES-SSEEEEEE-S--------S-EEES
T ss_pred CCceeEEEecccccccccceeeecchhhhcCCceeEEEee--cCCceEeccEEEeccceEEEecCC--------CceEec
Confidence 3566777732 36777777777765 44566653 667788888888766554443433 468888
Q ss_pred eEecCCCc-CCCcccC-CCeE-EEEcceeeCCcc----------eeeecCC------CceEEEEccEEeCCCc
Q 015623 272 NHFGEGLV-QRMPRCR-QGYF-HVVNNDYTEWQM----------YAIGGSA------APTINSQGNRFFAPNE 325 (403)
Q Consensus 272 N~f~~n~~-~R~Pr~R-~G~~-Hv~NN~y~~~~~----------yaigg~~------~~~i~~egN~F~~~~~ 325 (403)
|+|-.+-. ...+-+| +|.- .|+|||+++-.. +++-.+. -..+.+++|-|+....
T Consensus 252 N~FiGng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~ 324 (425)
T PF14592_consen 252 NVFIGNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCKS 324 (425)
T ss_dssp -EEEE-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-SE
T ss_pred cEEecCCCcCCCCceEEecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccCC
Confidence 88853211 1234555 3543 478999886422 2221111 1137888999988763
No 69
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=86.95 E-value=0.4 Score=36.65 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=15.2
Q ss_pred CCCChhhHHHhhhhhhh
Q 015623 24 SIQDPELVAQDVHRSIN 40 (403)
Q Consensus 24 ~~~~~~~~~~~~~~~~~ 40 (403)
-.|||++|+++||..|+
T Consensus 24 Y~pdP~~Vt~~FN~~V~ 40 (56)
T PF04431_consen 24 YVPDPENVTNEFNRHVH 40 (56)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 47999999999998875
No 70
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=86.73 E-value=7.8 Score=36.61 Aligned_cols=88 Identities=23% Similarity=0.219 Sum_probs=57.5
Q ss_pred ceEEEEcceeccCC--eeeecCCCCCccCCcceeEEEEeeEecCCCcCCCcccCC--C-------eEEEEcceeeCCc--
Q 015623 235 TAITISNNYFTHHD--KVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQ--G-------YFHVVNNDYTEWQ-- 301 (403)
Q Consensus 235 ~~VTISnn~f~~H~--k~~LiG~sd~~~~d~~~~VT~~hN~f~~n~~~R~Pr~R~--G-------~~Hv~NN~y~~~~-- 301 (403)
++|-|-||.+.+-. -.-|+|...+++.+....|-+|||.|. . ...+|...+ | ..-+.||+|+...
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY-~-tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~a 79 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFY-D-TGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHA 79 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEee-c-CCcCCCCceeeeEEeccccccEEEeeeecccccc
Confidence 47888899998643 456788766665555568999999995 3 456676653 3 2478999998643
Q ss_pred ----ceeee----cCCCceEEEEccEEeCCC
Q 015623 302 ----MYAIG----GSAAPTINSQGNRFFAPN 324 (403)
Q Consensus 302 ----~yaig----g~~~~~i~~egN~F~~~~ 324 (403)
||..+ ...+-+..+.+|.+.+..
T Consensus 80 ai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 80 AIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred eEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 33333 112345667788776644
No 71
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=83.89 E-value=7 Score=39.62 Aligned_cols=119 Identities=15% Similarity=0.140 Sum_probs=72.0
Q ss_pred CCCcEEeeCCccEEEEeeeecCCC-----CCeeeeeeCCceEEEEcceeccCCeeeecCCCCCccC--CcceeEEEEeeE
Q 015623 201 DGDGVSIFSSQHIWIDHCSLSNCQ-----DGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSYTQ--DKNMQATIAFNH 273 (403)
Q Consensus 201 ~~DaIsi~gs~nVWIDHcs~s~~~-----DgliDv~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~--d~~~~VT~~hN~ 273 (403)
-+-++.|..+.||+|...+|.... +..|.+..++.+|=|-+|-|..|....---+.|.... ...--||+-+|+
T Consensus 115 ~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~ 194 (345)
T COG3866 115 VGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNK 194 (345)
T ss_pred EeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeee
Confidence 356788988999999999999876 4456766788999999999987654311112222111 112469999999
Q ss_pred ecCCCcCCCcccC--------CC--eEEEEcceeeCCcceeeecCCCceEEEEccEEeC
Q 015623 274 FGEGLVQRMPRCR--------QG--YFHVVNNDYTEWQMYAIGGSAAPTINSQGNRFFA 322 (403)
Q Consensus 274 f~~n~~~R~Pr~R--------~G--~~Hv~NN~y~~~~~yaigg~~~~~i~~egN~F~~ 322 (403)
|.++-.+ -.+. -| .+-+-+|||.|--.-+-.-+ -..+-+-+|||+.
T Consensus 195 fhdh~Ks--sl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriR-fG~vHvyNNYy~~ 250 (345)
T COG3866 195 FHDHDKS--SLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIR-FGMVHVYNNYYEG 250 (345)
T ss_pred eecCCee--eeeccCCcccccCCceeEEEeccccccccccCCceE-eeEEEEecccccc
Confidence 9644221 1111 12 25666888887422111000 0235678899983
No 72
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=78.53 E-value=31 Score=31.36 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=31.7
Q ss_pred EEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeeeee
Q 015623 169 IIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAI 231 (403)
Q Consensus 169 VIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliDv~ 231 (403)
+-|+||.|...... . ....++|.+..+++++|++|++..+..-.+.+.
T Consensus 94 ~~i~nl~i~~~~~~-------------~--~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~ 141 (225)
T PF12708_consen 94 IQIRNLTIDGNGID-------------P--NNNNNGIRFNSSQNVSISNVRIENSGGDGIYFN 141 (225)
T ss_dssp EEEEEEEEEETCGC-------------E---SCEEEEEETTEEEEEEEEEEEES-SS-SEEEE
T ss_pred EEEEeeEEEccccc-------------C--CCCceEEEEEeCCeEEEEeEEEEccCccEEEEE
Confidence 44999999753211 0 012578888889999999999998755544543
No 73
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=64.63 E-value=1.3e+02 Score=28.59 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=42.4
Q ss_pred CCccEEEEeeeecCC-CCCeeee-----eeCCceEEEEcceecc--CCeeeecCCCCCc-cCCcceeEEEEeeEecCCCc
Q 015623 209 SSQHIWIDHCSLSNC-QDGLIDA-----IHGSTAITISNNYFTH--HDKVMLLGHSDSY-TQDKNMQATIAFNHFGEGLV 279 (403)
Q Consensus 209 gs~nVWIDHcs~s~~-~DgliDv-----~~gs~~VTISnn~f~~--H~k~~LiG~sd~~-~~d~~~~VT~~hN~f~~n~~ 279 (403)
.+++|+|.|+.|..+ ....++. ..|-.+..|-||.|.. |..+.-....... ........++.+|.+. |+.
T Consensus 32 ~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~-NT~ 110 (198)
T PF08480_consen 32 SAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIV-NTR 110 (198)
T ss_pred ccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEe-eee
Confidence 357999999999985 3333332 2344678999999985 2222222111111 1223456667778884 666
Q ss_pred CC
Q 015623 280 QR 281 (403)
Q Consensus 280 ~R 281 (403)
+|
T Consensus 111 ~r 112 (198)
T PF08480_consen 111 KR 112 (198)
T ss_pred ec
Confidence 55
No 74
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=63.18 E-value=12 Score=26.08 Aligned_cols=40 Identities=28% Similarity=0.262 Sum_probs=26.3
Q ss_pred cEEeeCCccEEEEeeeecCCCCCeeeeeeCCceEEEEcceec
Q 015623 204 GVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFT 245 (403)
Q Consensus 204 aIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~ 245 (403)
||.+..+++..|..+.++...||. .+ ..+.+-+|..|.|.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI-~~-~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGI-YL-TDSSNNTLSNNTAS 40 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEE-EE-EeCCCCEeECCEEE
Confidence 466666777777777777777754 32 34566666666665
No 75
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=56.55 E-value=52 Score=32.36 Aligned_cols=89 Identities=18% Similarity=0.183 Sum_probs=52.9
Q ss_pred cCCcEEEeeCCeE-EEeCCCeEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeC------CccE
Q 015623 141 NSHKTIDGRGASV-HIADGPCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFS------SQHI 213 (403)
Q Consensus 141 ~snkTI~G~ga~i-~I~~G~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~g------s~nV 213 (403)
.++.+|.|.+-.- .+..|.+|.|..+ +..|+|-+|+++. .+||.+.+ ..++
T Consensus 96 ~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~~---------------------~~GI~v~g~~~~~~i~~~ 153 (246)
T PF07602_consen 96 ANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNNG---------------------REGIFVTGTSANPGINGN 153 (246)
T ss_pred cCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECCc---------------------cccEEEEeeecCCcccce
Confidence 5666666653211 1123557889554 9999999999742 34565543 2456
Q ss_pred EEEeeeecCCCCCeeeeee--CCceEEEEcceeccCCeeee
Q 015623 214 WIDHCSLSNCQDGLIDAIH--GSTAITISNNYFTHHDKVML 252 (403)
Q Consensus 214 WIDHcs~s~~~DgliDv~~--gs~~VTISnn~f~~H~k~~L 252 (403)
.|.-+++....-|. ++.. ....-+|.||+|++-..++.
T Consensus 154 vI~GN~~~~~~~Gi-~i~~~~~~~~n~I~NN~I~~N~~Gi~ 193 (246)
T PF07602_consen 154 VISGNSIYFNKTGI-SISDNAAPVENKIENNIIENNNIGIV 193 (246)
T ss_pred EeecceEEecCcCe-EEEcccCCccceeeccEEEeCCcCeE
Confidence 67777777666665 3221 12224789999997554443
No 76
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=54.55 E-value=1.2e+02 Score=30.42 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=33.0
Q ss_pred eeCCceEEEEcceeccCCeeeecCCCCCccCCcceeEEEEeeEecCCCcCCCcccCCCeEEEEcceeeC
Q 015623 231 IHGSTAITISNNYFTHHDKVMLLGHSDSYTQDKNMQATIAFNHFGEGLVQRMPRCRQGYFHVVNNDYTE 299 (403)
Q Consensus 231 ~~gs~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~~hN~f~~n~~~R~Pr~R~G~~Hv~NN~y~~ 299 (403)
-+.+.+|||..+.+. +--+|.... .+|+.++.. .+. .|.|---.+.+.|.-+.+
T Consensus 171 FWn~eNVtVyDS~i~----GEYLgW~Sk-------NltliNC~I-~g~---QpLCY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 171 FWNCENVTVYDSVIN----GEYLGWNSK-------NLTLINCTI-EGT---QPLCYCDNLVLENCTMID 224 (277)
T ss_pred cccCCceEEEcceEe----eeEEEEEcC-------CeEEEEeEE-ecc---CccEeecceEEeCcEeec
Confidence 345667777776664 222332211 589999998 454 377755567777877764
No 77
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=52.22 E-value=36 Score=32.88 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=29.1
Q ss_pred CCCcEEeeCCc-cEEEEeeeecCCCCCeeeeeeCCceEEEEcceecc
Q 015623 201 DGDGVSIFSSQ-HIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTH 246 (403)
Q Consensus 201 ~~DaIsi~gs~-nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~ 246 (403)
..||+++.+.. .+.|.-..+..+.|-.|-. .+...++|++-+..+
T Consensus 95 cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~-Ng~Gtv~I~nF~a~d 140 (215)
T PF03211_consen 95 CEDAATFKGDGGTVTIIGGGARNASDKVFQH-NGGGTVTIKNFYAED 140 (215)
T ss_dssp SSESEEEESSEEEEEEESTEEEEEEEEEEEE--SSEEEEEEEEEEEE
T ss_pred ceeeeEEcCCCceEEEeCCcccCCCccEEEe-cCceeEEEEeEEEcC
Confidence 56777777666 7777777777777777663 445567777733333
No 78
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=49.35 E-value=2.1e+02 Score=27.67 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=32.2
Q ss_pred CCCCcEEeeCCccEEEEeeeecCCCCCeeeeeeCCceEEEEcceecc-CCeee
Q 015623 200 SDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTH-HDKVM 251 (403)
Q Consensus 200 ~~~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~-H~k~~ 251 (403)
...|+|...+ +..|+.+-+.+..+..+.++..+..++|...-+.+ .+|+.
T Consensus 73 ~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~ 123 (215)
T PF03211_consen 73 NQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVF 123 (215)
T ss_dssp S-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEE
T ss_pred CCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEE
Confidence 3579999998 67777777777666666876555577777776654 34554
No 79
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=45.07 E-value=13 Score=28.64 Aligned_cols=33 Identities=27% Similarity=0.458 Sum_probs=20.3
Q ss_pred CCCchhHHHHHHHHhhhccccCCCCCChhhHHHh
Q 015623 1 MSNISVFLIFFFSLLIPNLVSSSSIQDPELVAQD 34 (403)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (403)
|.|+.-++++ +.+..+.|+.+-+.|+|..|+-.
T Consensus 1 mknllkilli-lafa~pvfassmq~p~pasvttt 33 (65)
T PF10880_consen 1 MKNLLKILLI-LAFASPVFASSMQMPDPASVTTT 33 (65)
T ss_pred ChhHHHHHHH-HHHhhhHhhhcccCCCCcceeHH
Confidence 4555444333 34455667666789999998654
No 80
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=40.37 E-value=54 Score=33.34 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=37.8
Q ss_pred EeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCee
Q 015623 163 IHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLI 228 (403)
Q Consensus 163 i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~Dgli 228 (403)
+.+.++.||||++-+++.|..+. ..| -|...+.|+|..|..||..++-++.--+|
T Consensus 264 vengkhfvirnvkaknitpdfsk-------kag----idnatvaiygcdnfvidni~mvnsagmli 318 (464)
T PRK10123 264 VENGKHFVIRNIKAKNITPDFSK-------KAG----IDNATVAIYGCDNFVIDNIEMINSAGMLI 318 (464)
T ss_pred ecCCcEEEEEeeeccccCCCchh-------hcC----CCcceEEEEcccceEEeccccccccccEE
Confidence 34667888888888877653221 112 35566788899999999988877655554
No 81
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=38.35 E-value=75 Score=21.99 Aligned_cols=42 Identities=12% Similarity=0.125 Sum_probs=31.2
Q ss_pred eEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCC
Q 015623 160 CITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNC 223 (403)
Q Consensus 160 gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~ 223 (403)
||.+..+++..|++=+|.+ ..|||.+..+++.-|..+.++..
T Consensus 1 GI~l~~s~~~~i~~N~i~~----------------------~~~GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN----------------------NSYGIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred CEEEEecCCCEEECcEEeC----------------------CCCEEEEEeCCCCEeECCEEEcC
Confidence 3666677777777777663 35699999999888888887653
No 82
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=33.53 E-value=1.2e+02 Score=32.85 Aligned_cols=54 Identities=24% Similarity=0.324 Sum_probs=35.8
Q ss_pred CeEEEeccccEEEEeEEEeeeecCCCCcccCCCCCCCCCCCCCCCcEEeeCCccEEEEeeeecCCCCCeee
Q 015623 159 PCITIHFATNIIIHGIHIHDCKKAGNGNIRDSPEHSGWWDASDGDGVSIFSSQHIWIDHCSLSNCQDGLID 229 (403)
Q Consensus 159 ~gi~i~~a~NVIIrnL~i~~~~~~~~~~i~~~~~~~g~~~~~~~DaIsi~gs~nVWIDHcs~s~~~DgliD 229 (403)
+.+.+ .+++++.+||.|++... . .....-|+.+ .+.++-+.+|.|.-..|=|.+
T Consensus 263 aT~~v-~~~~F~a~nitf~Ntag--------------~-~~~QAvAl~v-~~D~~~fy~c~~~G~QDTLy~ 316 (497)
T PLN02698 263 ATFTI-TGDGFIARDIGFKNAAG--------------P-KGEQAIALSI-TSDHSVLYRCSIAGYQDTLYA 316 (497)
T ss_pred eeEEE-ECCCeEEEeeEEEECCC--------------C-CCCceEEEEe-cCCcEEEEcceeecccchhee
Confidence 45666 68999999999998531 1 0013344444 478888899988876555543
No 83
>PF07822 Toxin_13: Neurotoxin B-IV-like protein; InterPro: IPR012497 The members of this family resemble neurotoxin B-IV (P01525 from SWISSPROT), which is a crustacean-selective neurotoxin produced by the marine worm Cerebratulus lacteus. This highly cationic peptide is approximately 55 residues and is arranged to form two antiparallel helices connected by a well-defined loop in a hairpin structure. The branches of the hairpin are linked by four disulphide bonds. Three residues identified as being important for activity, namely Arg-17, -25 and -34, are found on the same face of the molecule, while another residue important for activity, Trp30, is on the opposite side. The protein's mode of action is not entirely understood, but it may act on voltage-gated sodium channels, possibly by binding to an as yet uncharacterised site on these proteins. Its site of interaction may also be less specific, for example it may interact with negatively charged membrane lipids []. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1VIB_A.
Probab=27.83 E-value=17 Score=26.95 Aligned_cols=19 Identities=47% Similarity=1.115 Sum_probs=12.7
Q ss_pred ccceeccCCCccccccccc
Q 015623 57 IDDCWRCDPNWEGNRQRLA 75 (403)
Q Consensus 57 id~cwr~~~~w~~~~~~la 75 (403)
.|+|.||.-.|+..|-.-|
T Consensus 20 yd~ci~cqgkwagkrgkca 38 (55)
T PF07822_consen 20 YDDCIRCQGKWAGKRGKCA 38 (55)
T ss_dssp HHHH--TTGGGTT-HHHHH
T ss_pred hhHHheecceeccccCcch
Confidence 7999999999997765443
No 84
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=24.45 E-value=78 Score=33.96 Aligned_cols=54 Identities=28% Similarity=0.435 Sum_probs=37.7
Q ss_pred EEeeceE---EEeCceeeecCCcEEEeeCCeEEEeCC-CeEEEeccccEEEEeEEEeeeec
Q 015623 125 IFNRDMV---IKLNQELVMNSHKTIDGRGASVHIADG-PCITIHFATNIIIHGIHIHDCKK 181 (403)
Q Consensus 125 vF~~~g~---I~l~~~L~i~snkTI~G~ga~i~I~~G-~gi~i~~a~NVIIrnL~i~~~~~ 181 (403)
+||-.|. |+..+.=.+.-||--+|++.+++|.+| .||. .+|-|+||--|++..|
T Consensus 458 IFDNaMagVwIKTds~PtlrRNKI~dgRdgGicifngGkGll---e~neif~Nalit~S~p 515 (625)
T KOG1777|consen 458 IFDNAMAGVWIKTDSNPTLRRNKIYDGRDGGICIFNGGKGLL---EHNEIFRNALITDSAP 515 (625)
T ss_pred chhhhhcceEEecCCCcceeecceecCCCCcEEEecCCceee---echhhhhccccccCCh
Confidence 5666653 454455556779999999999999865 3553 3788888887765544
No 85
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=22.18 E-value=1.4e+02 Score=29.80 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=22.5
Q ss_pred CccEEEEeeeecCCCCCeeeeeeCCceEEEEcceeccCCeeeecCCC
Q 015623 210 SQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTHHDKVMLLGHS 256 (403)
Q Consensus 210 s~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~H~k~~LiG~s 256 (403)
++||-+++|.|.|-+= . +-+++++|.+|+|.+-.+..+|-+.
T Consensus 38 s~nI~~~~~~F~~KYP----~-Wh~~~~~i~~~~f~~~aRa~iWYs~ 79 (277)
T PF12541_consen 38 SRNIELKNCIFKWKYP----L-WHSDNIKIENCYFTEMARAAIWYSN 79 (277)
T ss_pred ccceEEECCEEeeECc----e-EEECCeEEEeeEEeecceeeeeEeC
Confidence 4555555555544210 1 1245666677777666666666544
No 86
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=20.77 E-value=3.3e+02 Score=30.03 Aligned_cols=70 Identities=17% Similarity=0.392 Sum_probs=32.1
Q ss_pred CCCCcEEeeCCccEEEEeeeecCCCCCeeeeeeCCceEEEEcceecc-CC-eeeecCCCCCccCC-cceeEEEEeeEe
Q 015623 200 SDGDGVSIFSSQHIWIDHCSLSNCQDGLIDAIHGSTAITISNNYFTH-HD-KVMLLGHSDSYTQD-KNMQATIAFNHF 274 (403)
Q Consensus 200 ~~~DaIsi~gs~nVWIDHcs~s~~~DgliDv~~gs~~VTISnn~f~~-H~-k~~LiG~sd~~~~d-~~~~VT~~hN~f 274 (403)
...|||.+...+.| ++| |.++.|-.|-+.+ ++++|+++-+.. |+ -++-+|........ ..-++.+.||.+
T Consensus 371 ~qtDGi~ly~nS~i--~dc-F~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~ 443 (582)
T PF03718_consen 371 FQTDGIELYPNSTI--RDC-FIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRW 443 (582)
T ss_dssp TT----B--TT-EE--EEE-EEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE---
T ss_pred eccCCccccCCCee--eee-EEEecCchhheee--cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeee
Confidence 46899999866666 444 5566666655443 789999998874 43 45567766443222 134677777754
No 87
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=20.69 E-value=53 Score=24.81 Aligned_cols=20 Identities=20% Similarity=0.458 Sum_probs=14.4
Q ss_pred CCCchhHHHHHHHHhhhccc
Q 015623 1 MSNISVFLIFFFSLLIPNLV 20 (403)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (403)
|.||.-+|++|+++++++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (92)
T TIGR02052 1 MKKLATLLALFVLTSLPAWA 20 (92)
T ss_pred ChhHHHHHHHHHHhcchhhh
Confidence 67887777777777777664
Done!