Query 015624
Match_columns 403
No_of_seqs 300 out of 2114
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:03:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02805 D-lactate dehydrogena 100.0 2.1E-57 4.6E-62 476.6 36.3 374 11-392 2-375 (555)
2 PRK11230 glycolate oxidase sub 100.0 4.6E-47 1E-51 395.6 32.1 278 112-392 18-300 (499)
3 TIGR00387 glcD glycolate oxida 100.0 6.1E-44 1.3E-48 365.1 25.4 239 154-392 1-243 (413)
4 PRK11183 D-lactate dehydrogena 100.0 5.5E-44 1.2E-48 366.5 24.2 279 113-402 3-339 (564)
5 COG0277 GlcD FAD/FMN-containin 100.0 2.7E-41 5.9E-46 348.2 26.0 268 119-391 2-279 (459)
6 KOG1231 Proteins containing th 100.0 3.8E-39 8.2E-44 319.1 15.9 240 146-391 59-319 (505)
7 KOG1232 Proteins containing th 100.0 2.7E-39 5.9E-44 313.5 13.7 296 106-403 46-350 (511)
8 PLN02441 cytokinin dehydrogena 100.0 4.2E-36 9E-41 312.2 24.1 232 123-363 39-279 (525)
9 PRK11282 glcE glycolate oxidas 100.0 6.9E-36 1.5E-40 298.1 20.7 198 159-360 3-204 (352)
10 TIGR01676 GLDHase galactonolac 100.0 3.9E-32 8.5E-37 282.4 23.8 205 147-361 58-263 (541)
11 TIGR01678 FAD_lactone_ox sugar 100.0 1.6E-31 3.4E-36 274.8 23.9 196 147-352 11-207 (438)
12 TIGR01679 bact_FAD_ox FAD-link 100.0 1.7E-31 3.7E-36 273.6 21.5 191 148-351 9-200 (419)
13 TIGR01677 pln_FAD_oxido plant- 100.0 3.1E-31 6.7E-36 278.6 23.6 198 146-350 27-235 (557)
14 KOG1233 Alkyl-dihydroxyacetone 100.0 2.1E-31 4.4E-36 259.3 15.6 220 147-367 157-382 (613)
15 PLN02465 L-galactono-1,4-lacto 100.0 8.6E-29 1.9E-33 259.4 23.9 196 147-352 93-289 (573)
16 PF01565 FAD_binding_4: FAD bi 100.0 5.1E-29 1.1E-33 217.3 12.6 136 151-287 1-138 (139)
17 PRK13905 murB UDP-N-acetylenol 99.9 3.8E-26 8.2E-31 224.4 16.1 164 145-325 25-193 (298)
18 PRK14652 UDP-N-acetylenolpyruv 99.9 3.7E-25 8.1E-30 217.3 19.3 189 112-325 3-196 (302)
19 PRK12436 UDP-N-acetylenolpyruv 99.9 5.6E-24 1.2E-28 209.3 17.4 188 113-324 4-197 (305)
20 PRK13906 murB UDP-N-acetylenol 99.9 1.6E-23 3.4E-28 206.3 18.6 188 113-324 4-197 (307)
21 TIGR00179 murB UDP-N-acetyleno 99.9 3.2E-23 7E-28 202.2 15.2 167 144-323 6-174 (284)
22 PRK13903 murB UDP-N-acetylenol 99.9 3E-22 6.5E-27 200.5 17.7 165 141-325 24-197 (363)
23 PRK14653 UDP-N-acetylenolpyruv 99.9 3.5E-22 7.6E-27 195.5 16.5 190 113-325 3-194 (297)
24 KOG4730 D-arabinono-1, 4-lacto 99.9 5.6E-22 1.2E-26 197.4 15.2 183 149-340 48-231 (518)
25 PRK14649 UDP-N-acetylenolpyruv 99.9 4.7E-21 1E-25 187.8 16.1 172 145-325 15-193 (295)
26 COG0812 MurB UDP-N-acetylmuram 99.8 1.2E-19 2.7E-24 175.2 16.6 165 144-324 14-183 (291)
27 PRK14650 UDP-N-acetylenolpyruv 99.8 1.1E-19 2.4E-24 177.6 16.0 164 145-326 27-196 (302)
28 PRK00046 murB UDP-N-acetylenol 99.8 2.3E-19 5.1E-24 177.8 16.7 169 144-324 14-188 (334)
29 PRK14648 UDP-N-acetylenolpyruv 99.8 2.7E-18 5.9E-23 170.3 15.5 172 141-325 21-237 (354)
30 PRK14651 UDP-N-acetylenolpyruv 99.7 3.9E-16 8.4E-21 150.8 14.5 150 145-324 15-170 (273)
31 KOG1262 FAD-binding protein DI 99.6 1.3E-15 2.9E-20 149.4 8.5 145 199-347 106-251 (543)
32 PRK13904 murB UDP-N-acetylenol 99.5 4.1E-14 8.8E-19 135.6 9.9 146 144-326 12-161 (257)
33 PF00941 FAD_binding_5: FAD bi 97.3 0.0002 4.3E-09 65.0 3.3 102 151-257 2-116 (171)
34 PRK09799 putative oxidoreducta 97.2 0.00067 1.5E-08 65.6 5.9 100 153-256 4-110 (258)
35 TIGR03312 Se_sel_red_FAD proba 96.9 0.0015 3.2E-08 63.3 5.7 100 154-257 4-110 (257)
36 PF02913 FAD-oxidase_C: FAD li 96.8 0.00046 9.9E-09 64.7 1.3 69 324-392 1-71 (248)
37 TIGR02963 xanthine_xdhA xanthi 96.6 0.0047 1E-07 64.8 6.8 102 151-256 192-303 (467)
38 PRK09971 xanthine dehydrogenas 95.9 0.024 5.2E-07 55.8 7.3 97 153-256 6-118 (291)
39 PLN02906 xanthine dehydrogenas 94.6 0.048 1E-06 64.1 5.7 102 152-257 229-351 (1319)
40 PLN00192 aldehyde oxidase 94.3 0.077 1.7E-06 62.5 6.4 106 151-256 233-352 (1344)
41 TIGR02969 mam_aldehyde_ox alde 93.8 0.11 2.4E-06 61.1 6.7 102 152-257 237-359 (1330)
42 TIGR03195 4hydrxCoA_B 4-hydrox 93.3 0.19 4.1E-06 50.2 6.5 100 152-256 5-117 (321)
43 TIGR03199 pucC xanthine dehydr 92.4 0.22 4.8E-06 48.2 5.3 95 157-256 1-109 (264)
44 COG4630 XdhA Xanthine dehydrog 91.9 0.23 5E-06 50.1 4.8 126 149-285 201-339 (493)
45 COG1319 CoxM Aerobic-type carb 90.2 0.71 1.5E-05 45.3 6.3 102 151-257 3-118 (284)
46 PF09330 Lact-deh-memb: D-lact 86.6 1.1 2.4E-05 43.5 5.0 68 330-402 1-69 (291)
47 PLN02683 pyruvate dehydrogenas 57.5 1E+02 0.0022 31.3 10.6 171 153-352 167-353 (356)
48 COG4981 Enoyl reductase domain 35.8 47 0.001 35.6 4.2 31 149-179 150-181 (717)
49 cd07033 TPP_PYR_DXS_TK_like Py 34.0 57 0.0012 28.7 4.1 28 153-180 126-153 (156)
50 KOG0430 Xanthine dehydrogenase 31.6 91 0.002 36.4 5.9 101 152-257 215-332 (1257)
51 PRK04322 peptidyl-tRNA hydrola 31.5 73 0.0016 26.9 4.0 32 148-179 45-76 (113)
52 PF02779 Transket_pyr: Transke 26.1 82 0.0018 28.3 3.7 34 150-183 136-172 (178)
53 cd02407 PTH2_family Peptidyl-t 25.9 1.1E+02 0.0024 25.8 4.3 32 147-178 46-77 (115)
54 KOG3282 Uncharacterized conser 25.3 1.2E+02 0.0027 27.9 4.6 31 149-179 123-153 (190)
55 PF00076 RRM_1: RNA recognitio 24.4 1.7E+02 0.0036 20.8 4.6 46 299-348 14-59 (70)
56 PF01981 PTH2: Peptidyl-tRNA h 23.5 1.5E+02 0.0034 24.7 4.7 36 148-183 48-84 (116)
57 COG0351 ThiD Hydroxymethylpyri 22.9 4.1E+02 0.0088 26.0 7.9 114 106-240 112-229 (263)
58 TIGR00283 arch_pth2 peptidyl-t 21.6 1.9E+02 0.004 24.5 4.7 32 148-179 47-78 (115)
59 PF14259 RRM_6: RNA recognitio 21.5 2.1E+02 0.0046 20.6 4.7 45 299-347 14-58 (70)
60 COG4359 Uncharacterized conser 21.3 92 0.002 29.0 3.0 24 163-186 78-101 (220)
61 PF07317 YcgR: Flagellar regul 21.3 2E+02 0.0044 23.7 4.9 67 157-239 4-70 (108)
62 cd06568 GH20_SpHex_like A subg 21.0 77 0.0017 31.7 2.7 22 159-180 73-94 (329)
63 cd02742 GH20_hexosaminidase Be 20.8 80 0.0017 31.1 2.7 23 158-180 69-91 (303)
64 cd07036 TPP_PYR_E1-PDHc-beta_l 20.5 1.4E+02 0.0031 26.8 4.1 29 152-180 136-164 (167)
65 cd02429 PTH2_like Peptidyl-tRN 20.3 2.1E+02 0.0045 24.3 4.7 32 148-179 53-84 (116)
No 1
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=2.1e-57 Score=476.58 Aligned_cols=374 Identities=79% Similarity=1.216 Sum_probs=307.7
Q ss_pred hhccccceeccccccCcccccccccccccccCCCCCCCCCcccccccchhHHHHHHhhhcccccccCCCCccCCCCCCcc
Q 015624 11 LRSSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASAGSLAMQSQTHPSLCDSSALDSR 90 (403)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (403)
+|+.+|.++-+.+++.+..++...++ +.+|+.++. .+.+|. ...+.++.+.+++..+.-.....++|+.+..+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (555)
T PLN02805 2 LRSLLRTSRPNRALPSFPKSTLDVTV---TTPVKGRRR-LPTSWS-SSLLPLAIAASAGSLAYLNQSNPSLCDSSDLDSR 76 (555)
T ss_pred cchhhhhccccccCCCCcccccCccc---cccccCCCC-CCCccc-cccchHHHHHHHHHHHHhcCcceeeccccccccc
Confidence 44555555555555544444322221 333333333 333331 1112333333332222222334466765555554
Q ss_pred ccccCCCcccceeecCCCCCCcHHHHHHHHHhcCCCeeeChhhhhhccCCCCCcCcCCCCCcEEEEcCCHHHHHHHHHHH
Q 015624 91 DVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCC 170 (403)
Q Consensus 91 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~L~~~lg~~v~~~~~~~~~~~~~~~s~~~~~~~P~~Vv~P~s~eeV~~iv~~a 170 (403)
+|++...++..+..++.++++++++|++++++++.++.+++..|+++...+++....|.+|++|+|++||+++|++|
T Consensus 77 ---~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~v~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~ivk~a 153 (555)
T PLN02805 77 ---VGGKGSTEFVVKGEHKLVPQELIDELKAILQDNMTLDYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKSC 153 (555)
T ss_pred ---ccCccccchhhccccccchHHHHHHHHHhcCCceecCHHHHHHhccCcccccccCCCCCEEEEcCCHHHHHHHHHHH
Confidence 79999999998888888889999999999998899999999999887654544445799999999999999999999
Q ss_pred HhCCCCeeeeCCCCCCCcccccCCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHHHHHhcCCCeecCCCCcccccc
Q 015624 171 DKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIG 250 (403)
Q Consensus 171 ~~~~~pv~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~p~~~~~~~TvG 250 (403)
+++++|++|+|||||+.|++++.++|++|||++||+|+++|+++.+++||||++|.+|+++|.++|+++|++|++.+|||
T Consensus 154 ~~~~ipv~prGgGts~~G~~~~~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L~~~L~~~Gl~~p~~p~~~~TIG 233 (555)
T PLN02805 154 NKYKVPIVPYGGATSIEGHTLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNEYLEPYGLFFPLDPGPGATIG 233 (555)
T ss_pred HHCCCcEEEECCCCCCCCCccCCCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHHHHHHHHcCCEeCCCCccccChh
Confidence 99999999999999999999887789999999999999999999999999999999999999999999999999889999
Q ss_pred ccccccccCCCccccccccceEEEEEEEeCCCeEEEcccccccccccccchhhhhccCCceeEEEEEEEEeEecCCccEE
Q 015624 251 GMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVV 330 (403)
Q Consensus 251 G~ia~n~~G~~s~~yG~~~D~V~~levV~~dG~iv~~~~~~~~~~~g~dL~~~~~Gs~GtlGIIT~~tLkl~p~p~~~~~ 330 (403)
|++++|++|..+.+||.++|+|+++|||++||++++++.+..++..||||+|+++||+|+|||||+++||++|.|+....
T Consensus 234 G~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~ 313 (555)
T PLN02805 234 GMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVV 313 (555)
T ss_pred hHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceEE
Confidence 99999999999999999999999999999999999987776777889999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHcCCCceEEEecCHHHHHHHHHhhCCCCCCCCceEEEEcCChh
Q 015624 331 ATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTRE 392 (403)
Q Consensus 331 ~~~~f~~~~~a~~~~~~i~~~~~~~~~~e~~D~~~~~~~~~~~~~~~p~~~~l~~e~~g~~~ 392 (403)
.++.|++++++.+++.++++.++.|.++|+||+..++.++...+..+|+.+.|++||+|+++
T Consensus 314 ~~~~f~~~~~a~~av~~i~~~g~~psa~ElmD~~~~~~~~~~~~~~~p~~~~Ll~e~~g~~~ 375 (555)
T PLN02805 314 AMCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQIRAINMANGKNLPEAPTLMFEFIGTEA 375 (555)
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCCcEEEEEECHHHHHHHHHhcCCCCCcceEEEEEEecCcH
Confidence 99999999999999999998999999999999999888776655567777899999999865
No 2
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=4.6e-47 Score=395.62 Aligned_cols=278 Identities=24% Similarity=0.430 Sum_probs=250.2
Q ss_pred cHHHHHHHHHhcCC-CeeeChhhhhhccCCCCCcCcCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCccc
Q 015624 112 PQELVDELKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHT 190 (403)
Q Consensus 112 ~~~~~~~L~~~lg~-~v~~~~~~~~~~~~~~~s~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~ 190 (403)
.++++++|++++|. +|.++.+++..|+.|..+.++ ..|.+|++|+|++||+++|++|+++++|+++||+||++.|++
T Consensus 18 ~~~~~~~l~~~~g~~~v~~~~~~~~~y~~d~~~~~~--~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~ 95 (499)
T PRK11230 18 RTSLLMALREHLPGLEILHTDEELIPYECDGLSAYR--TRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGA 95 (499)
T ss_pred HHHHHHHHHHhcCcceEEcCHHHHHHhccCcccccC--CCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCc
Confidence 35689999999985 788888888888877544433 589999999999999999999999999999999999999998
Q ss_pred ccCCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHHHHHhcCCCeecCCCCc--cccccccccccccCCCccccccc
Q 015624 191 LSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLAVRYGTM 268 (403)
Q Consensus 191 ~~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~p~~~~~--~~TvGG~ia~n~~G~~s~~yG~~ 268 (403)
.+..+|++|||++||+|+++|+++++++||||++|.+|+++|.++|++++++|+. .+||||++++|++|+.+.+||.+
T Consensus 96 ~~~~~gividl~~ln~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~ 175 (499)
T PRK11230 96 LPLEKGVLLVMARFNRILDINPVGRRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLT 175 (499)
T ss_pred ccCCCcEEEEcccCCCceEEcCCCCEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCCh
Confidence 8877899999999999999999999999999999999999999999999988865 59999999999999999999999
Q ss_pred cceEEEEEEEeCCCeEEEcccccccccccccchhhhhccCCceeEEEEEEEEeEecCCccEEEEEeCCCHHHHHHHHHHH
Q 015624 269 RDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIAT 348 (403)
Q Consensus 269 ~D~V~~levV~~dG~iv~~~~~~~~~~~g~dL~~~~~Gs~GtlGIIT~~tLkl~p~p~~~~~~~~~f~~~~~a~~~~~~i 348 (403)
+|+|+++|||++||++++++... .+..||||+|+++||+|+|||||++|||++|.|+......+.|++++++.+++.++
T Consensus 176 ~d~v~~levVl~~G~i~~~~~~~-~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~ 254 (499)
T PRK11230 176 VHNLLKVEILTLDGEALTLGSDA-LDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDI 254 (499)
T ss_pred hhheeEEEEEcCCCcEEEeCCcc-CCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHH
Confidence 99999999999999999987653 34569999999999999999999999999999999888899999999999999999
Q ss_pred HHcCCCceEEEecCHHHHHHHHHhhCCCCC--CCCceEEEEcCChh
Q 015624 349 MLSGIQVSRVELLDEVQVRAVNIANGKNLP--ELPTLMFEFIGTRE 392 (403)
Q Consensus 349 ~~~~~~~~~~e~~D~~~~~~~~~~~~~~~p--~~~~l~~e~~g~~~ 392 (403)
++.++.|.++|+||+..+..++.+....+| ..+.+++|++|+++
T Consensus 255 ~~~~~~p~~~el~d~~~~~~~~~~~~~~~p~~~~~~ll~e~~g~~~ 300 (499)
T PRK11230 255 IAAGIIPGGLEMMDNLSIRAAEDFIHAGYPVDAEAILLCELDGVES 300 (499)
T ss_pred HhcCCCcEEEEeeCHHHHHHHHHhcCCCCCCCcceEEEEEecCCch
Confidence 999999999999999988766655444444 34689999999865
No 3
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=100.00 E-value=6.1e-44 Score=365.08 Aligned_cols=239 Identities=37% Similarity=0.688 Sum_probs=220.8
Q ss_pred EEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHHHHHh
Q 015624 154 IVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLE 233 (403)
Q Consensus 154 Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~~~l~ 233 (403)
||+|+|+|||++++++|+++++|++++|+|||+.|++++.+++++|||++||+|+++|+++.+++||||+++.+|+++|.
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l~ 80 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEEGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAVE 80 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCCCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHHH
Confidence 67899999999999999999999999999999999988877899999999999999999999999999999999999999
Q ss_pred cCCCeecCCCCc--cccccccccccccCCCccccccccceEEEEEEEeCCCeEEEcccccccccccccchhhhhccCCce
Q 015624 234 PYGLFFPLDPGP--GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTL 311 (403)
Q Consensus 234 ~~Gl~~p~~~~~--~~TvGG~ia~n~~G~~s~~yG~~~D~V~~levV~~dG~iv~~~~~~~~~~~g~dL~~~~~Gs~Gtl 311 (403)
++|+++|++|+. .+||||++++|++|..+.+||.++|+|++++||++||++++++....++..||||+++++|++|+|
T Consensus 81 ~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~Gtl 160 (413)
T TIGR00387 81 EHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSEGTL 160 (413)
T ss_pred HcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCCccc
Confidence 999999988875 699999999999999999999999999999999999999998877677889999999999999999
Q ss_pred eEEEEEEEEeEecCCccEEEEEeCCCHHHHHHHHHHHHHcCCCceEEEecCHHHHHHHHHhhCCCCCCC--CceEEEEcC
Q 015624 312 GIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPEL--PTLMFEFIG 389 (403)
Q Consensus 312 GIIT~~tLkl~p~p~~~~~~~~~f~~~~~a~~~~~~i~~~~~~~~~~e~~D~~~~~~~~~~~~~~~p~~--~~l~~e~~g 389 (403)
||||+++||++|.|+......+.|++++++.+++..+++.++.|.++|++|+..+..+.......+|.. ..+++||+|
T Consensus 161 Giit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~a~el~d~~~~~~~~~~~~~~~p~~~~~~l~v~~~g 240 (413)
T TIGR00387 161 GIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIAAGIIPAGMEFLDNLSIKAVEDISGIGLPKDAGAILLVEIDG 240 (413)
T ss_pred eEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHhcCCCcEEEEccCHHHHHHHHHhcCCCCCCCCceEEEEEecC
Confidence 999999999999999998899999999999999999999999999999999998876665444445543 478999999
Q ss_pred Chh
Q 015624 390 TRE 392 (403)
Q Consensus 390 ~~~ 392 (403)
.++
T Consensus 241 ~~~ 243 (413)
T TIGR00387 241 VHE 243 (413)
T ss_pred CcH
Confidence 765
No 4
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=5.5e-44 Score=366.47 Aligned_cols=279 Identities=18% Similarity=0.208 Sum_probs=250.3
Q ss_pred HHHHHHHHHhcCC-CeeeChhhhhhccCCCCCcCcCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccc
Q 015624 113 QELVDELKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191 (403)
Q Consensus 113 ~~~~~~L~~~lg~-~v~~~~~~~~~~~~~~~s~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~ 191 (403)
++++++|++++|+ +|.+++..+..|.+++. . ..+.|.+||+|.|++||+++|++|+++++||++|||||++.|+++
T Consensus 3 ~~li~~L~~IvG~~~Vltd~~~l~~Y~~D~r-~--~~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAv 79 (564)
T PRK11183 3 KALINELTRIVGSSHVLTDPAKTERYRKGFR-S--GQGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGST 79 (564)
T ss_pred HHHHHHHHHhcCcccEecCHHHHHHhccCcc-c--cCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcc
Confidence 5688999999995 78899998888887742 2 246899999999999999999999999999999999999999999
Q ss_pred cCCC-----cEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHHHHHhcCCCeecCCCCc---cccccccccccccCCCcc
Q 015624 192 SPNG-----GVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP---GATIGGMCATRCSGSLAV 263 (403)
Q Consensus 192 ~~~~-----gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~p~~~~~---~~TvGG~ia~n~~G~~s~ 263 (403)
|..+ +|+|||.+||+|+++| ++..++||||+++.+|+++|+++|+.++.++++ ++||||+|++|++|....
T Consensus 80 P~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vl 158 (564)
T PRK11183 80 PNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPGTTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQ 158 (564)
T ss_pred cCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhhe
Confidence 8643 7999999999999999 667899999999999999999999998776533 689999999999999999
Q ss_pred ccccccceEEEEEEEeCCCeE-------EEcccccc--c---ccccc---------------------------------
Q 015624 264 RYGTMRDNVINLKVVLANGDV-------VKTASRAR--K---SAAGY--------------------------------- 298 (403)
Q Consensus 264 ~yG~~~D~V~~levV~~dG~i-------v~~~~~~~--~---~~~g~--------------------------------- 298 (403)
+||.+.+++++ ++|++||++ ++.+...+ . .+.||
T Consensus 159 Rgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfn 237 (564)
T PRK11183 159 RGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFN 237 (564)
T ss_pred Ecchhhhhhhh-hEECCCCcEEEeeccCcccCCCHHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCccccc
Confidence 99999999999 999999999 76665542 2 35677
Q ss_pred -cchhhh--hccCCceeEEEEEEEEeEecCCccEEEEEeCCCHHHHHHHHHHHHHc-CCCceEEEecCHHHHHHHHHhhC
Q 015624 299 -DLTRLI--IGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLS-GIQVSRVELLDEVQVRAVNIANG 374 (403)
Q Consensus 299 -dL~~~~--~Gs~GtlGIIT~~tLkl~p~p~~~~~~~~~f~~~~~a~~~~~~i~~~-~~~~~~~e~~D~~~~~~~~~~~~ 374 (403)
|+.+++ .||+|+|||| +++|+++|.|+...++++.|++.+++.+..+.++.. +..|.++||||+..+++++++.+
T Consensus 238 aDl~~LfeasGseGkLgV~-avrLdtfp~p~~~~vf~ig~n~~~~~~~~rr~il~~~~~lP~a~Eym~r~~~d~~~~ygk 316 (564)
T PRK11183 238 ADPRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFYIGTNDPAVLTEIRRHILANFKNLPVAGEYMHRDAFDIAEKYGK 316 (564)
T ss_pred CCHHHHhhccCCCceEEEE-EEEeccccCCCcceEEEEeCCCHHHHHHHHHHHHHhCCCCceeEeecCHHHHHHHHHhCC
Confidence 999999 9999999999 999999999999999999999999999999999887 89999999999999999998766
Q ss_pred CCCCCCCceEEEEcCChhhHhhhhcccC
Q 015624 375 KNLPELPTLMFEFIGTREMISLFAFNTF 402 (403)
Q Consensus 375 ~~~p~~~~l~~e~~g~~~~~~~~~~~~~ 402 (403)
.. .++|+.-|++..+..|++|.+
T Consensus 317 d~-----~~~i~~~gt~~~p~~f~~k~~ 339 (564)
T PRK11183 317 DT-----FLMIDKLGTDKLPKLFALKGR 339 (564)
T ss_pred cc-----EEehhhhCchhHHHHHhhHHH
Confidence 44 788999999999999999853
No 5
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=2.7e-41 Score=348.19 Aligned_cols=268 Identities=38% Similarity=0.659 Sum_probs=231.2
Q ss_pred HHHhcCC-CeeeChhhhhhccCCCCCcCcCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCCcE
Q 015624 119 LKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGV 197 (403)
Q Consensus 119 L~~~lg~-~v~~~~~~~~~~~~~~~s~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~gv 197 (403)
|.++++. .+.++...+..|..+.. . ....|.+|+.|+|++||++++++|+++++||+|||+||++.|++.+. +||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~d~~-~--~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~gv 77 (459)
T COG0277 2 LKRILGELNVLTDPADRAAYRTDAS-V--YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-GGV 77 (459)
T ss_pred hhHhcCccceecCHHHHhhccCCcc-h--hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-CcE
Confidence 4556664 46677777777776654 2 33689999999999999999999999999999999999999999987 799
Q ss_pred EEEcCCCCCcEEeeecCcEEEEccCCCHHHHHHHHhcCCCeecCCCCc--cccccccccccccCCCccccccccceEEEE
Q 015624 198 CIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLAVRYGTMRDNVINL 275 (403)
Q Consensus 198 vIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~p~~~~~--~~TvGG~ia~n~~G~~s~~yG~~~D~V~~l 275 (403)
+|||++||+|+++|+++.+++||||+++.+|+++|.++|+++|++|++ .+||||++++|++|..+.+||.++|+|+++
T Consensus 78 vl~l~~mn~i~~id~~~~~~~v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l 157 (459)
T COG0277 78 VLDLSRLNRILEIDPEDGTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGL 157 (459)
T ss_pred EEEchhhcchhccCcCCCEEEEcCCccHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEE
Confidence 999999999988999999999999999999999999999999999987 599999999999999999999999999999
Q ss_pred EEEeCCCeEEEcccccccccccccchhhhhccCCceeEEEEEEEEeEecCCccEEEEEeCCCHHHHHHHHH-HH---HHc
Q 015624 276 KVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAI-AT---MLS 351 (403)
Q Consensus 276 evV~~dG~iv~~~~~~~~~~~g~dL~~~~~Gs~GtlGIIT~~tLkl~p~p~~~~~~~~~f~~~~~a~~~~~-~i---~~~ 351 (403)
++|++||++++++.+..|+..||||++++.|++|+|||||+++||+.|.|+.....+..|++.+.+..... .. ...
T Consensus 158 ~vV~~dG~i~~~~~~~~k~~~g~dl~~l~iGs~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (459)
T COG0277 158 RVVLPDGEILRLGRKLRKDNAGYDLTALFVGSEGTLGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEAL 237 (459)
T ss_pred EEEcCCceehhhcCcccCCCCCCCHHHhcccCCccceEEEEEEEEeccCCchheEEEEeCCCHHHHHHHHHHHHHhhhhc
Confidence 99999999999999888889999999999999999999999999999999999999999999988776333 22 234
Q ss_pred CCCceEEEecCHHHHHHHHHh-hCCCCCCC--CceEEEEcCCh
Q 015624 352 GIQVSRVELLDEVQVRAVNIA-NGKNLPEL--PTLMFEFIGTR 391 (403)
Q Consensus 352 ~~~~~~~e~~D~~~~~~~~~~-~~~~~p~~--~~l~~e~~g~~ 391 (403)
+..+..+|++|.. +...... ....+|.. ..+++|++|.+
T Consensus 238 ~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (459)
T COG0277 238 GVIPAALEFMDRP-IKAAEAYLGGGALPLEAPARLLVEVEGSD 279 (459)
T ss_pred CCCceeeeecchh-HHHHHHhccccCCCCCCceEEEEEEcCCc
Confidence 4679999999998 3333322 22334443 34888888876
No 6
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=3.8e-39 Score=319.11 Aligned_cols=240 Identities=40% Similarity=0.642 Sum_probs=217.0
Q ss_pred cCCCCCcEEEEcCCHHHHHHHHHHHHhC--CCCeeeeCCCCCCCcccccCCCcEEEEcC---CCCCcEEeeecCcEEEEc
Q 015624 146 KAVNIPDIIVFPRSEDEVSKIVKCCDKH--KVPIIPYGGATSIEGHTLSPNGGVCIDLS---LMKSVKALHIEDMDVVVE 220 (403)
Q Consensus 146 ~~~~~P~~Vv~P~s~eeV~~iv~~a~~~--~~pv~~~GgG~s~~g~~~~~~~gvvIdl~---~mn~i~~id~~~~~v~Ve 220 (403)
+....|.+|..|+|+|||++++|+|+.+ .+||.+||+|||+.|++.+..+|++|.|+ .|+++..+..++.+|.|+
T Consensus 59 ~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~~GvvV~m~~~~~~~~~~~~~~~~~yvdV~ 138 (505)
T KOG1231|consen 59 RTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATRGGVVVCMDSSLLMKDVPVLVVDDLYVDVS 138 (505)
T ss_pred cCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCCCCeEEEEehhhccCCCceeecccceEEee
Confidence 4557999999999999999999999999 99999999999999999998899776554 567776778888999999
Q ss_pred cCCCHHHHHHHHhcCCC--eecCCCCccccccccccccccCCCccccccccceEEEEEEEeCCCeEEEcccccccccccc
Q 015624 221 PGIGWMELNEYLEPYGL--FFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGY 298 (403)
Q Consensus 221 aGv~~~~L~~~l~~~Gl--~~p~~~~~~~TvGG~ia~n~~G~~s~~yG~~~D~V~~levV~~dG~iv~~~~~~~~~~~g~ 298 (403)
||..|-+|++++.++|+ .++.|+++ .||||++++.|.|..+.+||++.+||++++||+++|++++|..+ .|+
T Consensus 139 ~g~~Widll~~t~e~GL~p~swtDyl~-ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r-----~n~ 212 (505)
T KOG1231|consen 139 AGTLWIDLLDYTLEYGLSPFSWTDYLP-LTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKR-----ANS 212 (505)
T ss_pred CChhHHHHHHHHHHcCCCccCcCCccc-eeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccc-----cCc
Confidence 99999999999999999 68889888 99999999999999999999999999999999999999999765 489
Q ss_pred cchhhhhccCCceeEEEEEEEEeEecC---CccEEEEE-eCCCHHHHHHHHHHHHHcCCCceEEEecCHHHHHHHHHhhC
Q 015624 299 DLTRLIIGSEGTLGIITEVTLRLQKIP---QHSVVATC-NFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANG 374 (403)
Q Consensus 299 dL~~~~~Gs~GtlGIIT~~tLkl~p~p---~~~~~~~~-~f~~~~~a~~~~~~i~~~~~~~~~~e~~D~~~~~~~~~~~~ 374 (403)
+||.++.||+|+|||||+++++|+|.| +.....+. .|+.+++++...+..++.+++.+.+|+.|+.++..++....
T Consensus 213 ~lf~~vlGglGqfGIITrArI~le~aP~~dQe~lis~~~~fd~veg~~~~~~~gl~~n~r~s~f~l~D~~~i~~~~~~~~ 292 (505)
T KOG1231|consen 213 NLFFLVLGGLGQFGIITRARIKLEPAPKRDQERLISVCGSFDTVEGAAIVARNGLQSNIRVSRFELLDEVQIAAINSDHS 292 (505)
T ss_pred eeeeeeeccCcceeeEEEEEEEeccCCccchHHhhhhhcCCcchhhhhhhhhccccccceeeccccCcHHHHHHHHhcCC
Confidence 999999999999999999999999999 66666666 89999999888878888999999999999999998887655
Q ss_pred CC----------CCCCCceEEEEcCCh
Q 015624 375 KN----------LPELPTLMFEFIGTR 391 (403)
Q Consensus 375 ~~----------~p~~~~l~~e~~g~~ 391 (403)
.. +++.|+++.|++|..
T Consensus 293 ~~yclev~ky~d~~e~pti~~e~~~l~ 319 (505)
T KOG1231|consen 293 TNYCLEVAKYYDLTEAPTLFQEIGGLS 319 (505)
T ss_pred eeeeeehhhccCcccCchHHHHHhccc
Confidence 33 677899999998854
No 7
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=2.7e-39 Score=313.47 Aligned_cols=296 Identities=27% Similarity=0.434 Sum_probs=260.2
Q ss_pred CCCCCCcHHHHHHHHHhcCC-CeeeChhhhhhccCCCCCcCcCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCC
Q 015624 106 GSHKEIPQELVDELKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGAT 184 (403)
Q Consensus 106 ~~~~~~~~~~~~~L~~~lg~-~v~~~~~~~~~~~~~~~s~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~ 184 (403)
..+..+.++.+..+++++|. .+.++.++...|..| ++.++.+.-..|..|+|++||++|+++|++.++.|+|+||.|
T Consensus 46 p~fa~l~~~Dl~~Fk~iLg~d~~~~~~edL~~~n~d--wm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNT 123 (511)
T KOG1232|consen 46 PNFAKLDSKDLAYFKSILGKDEVSTDKEDLENFNTD--WMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNT 123 (511)
T ss_pred CCcccccHHHHHHHHHHhcccccccChHHHhhhhhH--HHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCc
Confidence 36678888999999999995 577888888777665 345666889999999999999999999999999999999999
Q ss_pred CCCcccccCCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHHHHHhcCCCeecCCCCc--cccccccccccccCCCc
Q 015624 185 SIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLA 262 (403)
Q Consensus 185 s~~g~~~~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~p~~~~~--~~TvGG~ia~n~~G~~s 262 (403)
++.|+++|.-+.||++|.+||+|..+|+-.+++++++|+.+.++..+|.++|+.||.|-+. .|.|||.++||++|.+-
T Consensus 124 gLVGgSVPvfDEiVlsl~~mNKi~sfDevsGil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrl 203 (511)
T KOG1232|consen 124 GLVGGSVPVFDEIVLSLGLMNKILSFDEVSGILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRL 203 (511)
T ss_pred ccccCcccchHHHhhhhhhhccccccccccceEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEE
Confidence 9999999999999999999999999999999999999999999999999999999998876 69999999999999999
Q ss_pred cccccccceEEEEEEEeCCCeEEEcccccccccccccchhhhhccCCceeEEEEEEEEeEecCCccEEEEEeCCCHHHHH
Q 015624 263 VRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAA 342 (403)
Q Consensus 263 ~~yG~~~D~V~~levV~~dG~iv~~~~~~~~~~~g~dL~~~~~Gs~GtlGIIT~~tLkl~p~p~~~~~~~~~f~~~~~a~ 342 (403)
.+||...-+|+++|+|+|+|+++.....-+|++.|||+.++|+||||++||||.+.+-..|.|+..-..++..+++++..
T Consensus 204 lRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~kpksvn~af~gi~sf~~v~ 283 (511)
T KOG1232|consen 204 LRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPPKPKSVNVAFIGIESFDDVQ 283 (511)
T ss_pred EEecccccceeeeEEEcCCCchhhhhhhhcccCccccchhheecCCceeeEEeeEEEeecCCCcceeEEEEccccHHHHH
Confidence 99999999999999999999999988888999999999999999999999999999999999999989999999998887
Q ss_pred HHHHHHHH-cCCCceEEEecCHHHHHHHHHhhC-CCCCC---CC-ceEEEEcCChhhHhhhhcccCC
Q 015624 343 DVAIATML-SGIQVSRVELLDEVQVRAVNIANG-KNLPE---LP-TLMFEFIGTREMISLFAFNTFL 403 (403)
Q Consensus 343 ~~~~~i~~-~~~~~~~~e~~D~~~~~~~~~~~~-~~~p~---~~-~l~~e~~g~~~~~~~~~~~~~~ 403 (403)
.++....+ -+-..+++|+||+..+..+..+.+ ...|- .| .++||..|+...-+.-++.+||
T Consensus 284 k~fv~Aks~L~EILSafElmD~~s~~~~~~~l~~l~~pl~~~~pFyiLiETsGSn~dhD~eKl~afl 350 (511)
T KOG1232|consen 284 KVFVEAKSNLTEILSAFELMDNASMELVLEYLKDLHFPLEDEHPFYILIETSGSNKDHDEEKLTAFL 350 (511)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhccCCCCccCCCceEEEEEecCCCccccHHHHHHHH
Confidence 77655432 122578899999999987766654 33332 24 6899999998776666666553
No 8
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=4.2e-36 Score=312.17 Aligned_cols=232 Identities=19% Similarity=0.283 Sum_probs=201.5
Q ss_pred cCCCeeeChhhhhhccCCCCCcCcCCCCCcEEEEcCCHHHHHHHHHHHH--hCCCCeeeeCCCCCCCcccccCCCcEEEE
Q 015624 123 CQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCD--KHKVPIIPYGGATSIEGHTLSPNGGVCID 200 (403)
Q Consensus 123 lg~~v~~~~~~~~~~~~~~~s~~~~~~~P~~Vv~P~s~eeV~~iv~~a~--~~~~pv~~~GgG~s~~g~~~~~~~gvvId 200 (403)
++.++.+|+.+...|++++.... ...|.+|++|+|++||+++|++|+ +++++|.+||+|||+.|++.+ ++|++||
T Consensus 39 ~~~~v~~d~~~~~~~s~d~g~~~--~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~-~~GivId 115 (525)
T PLN02441 39 LDGHLSFDPVSTASASKDFGNLV--HSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQA-PGGVVVD 115 (525)
T ss_pred cCceEEeCHHHHHHHhcCccccc--CCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccC-CCeEEEE
Confidence 56678888888877877765443 368999999999999999999997 679999999999999998876 4799999
Q ss_pred cCCCCC------cEEeeecCcEEEEccCCCHHHHHHHHhcCCCeecCCCCc-cccccccccccccCCCccccccccceEE
Q 015624 201 LSLMKS------VKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLAVRYGTMRDNVI 273 (403)
Q Consensus 201 l~~mn~------i~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~p~~~~~-~~TvGG~ia~n~~G~~s~~yG~~~D~V~ 273 (403)
|++||+ ++++|.+..+|+|++|++|.++.+++.++|+.++..+.. ..|+||++++++.|..+.+||.+.|+|+
T Consensus 116 ms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~GlaP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl 195 (525)
T PLN02441 116 MRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVL 195 (525)
T ss_pred CCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCccCCccccCceEEeEEcCCCCccccccccCcHHHhEE
Confidence 999999 678888999999999999999999999999875544433 6899999999998888999999999999
Q ss_pred EEEEEeCCCeEEEcccccccccccccchhhhhccCCceeEEEEEEEEeEecCCccEEEEEeCCCHHHHHHHHHHHHHcCC
Q 015624 274 NLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGI 353 (403)
Q Consensus 274 ~levV~~dG~iv~~~~~~~~~~~g~dL~~~~~Gs~GtlGIIT~~tLkl~p~p~~~~~~~~~f~~~~~a~~~~~~i~~~~~ 353 (403)
++|||++||++++++.. .++||||+++|++|+|||||+++||++|.|+...+..+.|++++++.+....+.. +.
T Consensus 196 ~leVVtadGevv~~s~~-----~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~li~-~~ 269 (525)
T PLN02441 196 ELDVVTGKGEVVTCSPT-----QNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERLIS-RP 269 (525)
T ss_pred EEEEEeCCceEEEeCCC-----CChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHHHh-cC
Confidence 99999999999998653 3689999999999999999999999999999888888889999999998887765 33
Q ss_pred CceEEEecCH
Q 015624 354 QVSRVELLDE 363 (403)
Q Consensus 354 ~~~~~e~~D~ 363 (403)
.+..+|++|.
T Consensus 270 ~~~~~d~veg 279 (525)
T PLN02441 270 PENSFDYVEG 279 (525)
T ss_pred CCCCcceEeE
Confidence 4445566554
No 9
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=100.00 E-value=6.9e-36 Score=298.11 Aligned_cols=198 Identities=24% Similarity=0.379 Sum_probs=174.9
Q ss_pred CHHHHHHHHHHHHhCCCCeeeeCCCCC-CCcccccCCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHHHHHhcCCC
Q 015624 159 SEDEVSKIVKCCDKHKVPIIPYGGATS-IEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGL 237 (403)
Q Consensus 159 s~eeV~~iv~~a~~~~~pv~~~GgG~s-~~g~~~~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl 237 (403)
.++||+++|++|+++++|+.|+|+||+ ..|. +. ++++|||++||+|+++|+++.+++|+||+++.+|+++|.++|+
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~--~~-~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G~ 79 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGR--AL-AGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAGQ 79 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCC--CC-CCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcCC
Confidence 479999999999999999999999975 4444 22 4689999999999999999999999999999999999999999
Q ss_pred eecCCCC---ccccccccccccccCCCccccccccceEEEEEEEeCCCeEEEcccccccccccccchhhhhccCCceeEE
Q 015624 238 FFPLDPG---PGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGII 314 (403)
Q Consensus 238 ~~p~~~~---~~~TvGG~ia~n~~G~~s~~yG~~~D~V~~levV~~dG~iv~~~~~~~~~~~g~dL~~~~~Gs~GtlGII 314 (403)
.+|++|. ..+||||++++|++|+.+.+||.++|+|+++++|++||++++++.+..|+..||||+|+++||+|+||||
T Consensus 80 ~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~GtLGVi 159 (352)
T PRK11282 80 MLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSLGTLGVL 159 (352)
T ss_pred eeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCCchhhhh
Confidence 9887653 3489999999999999999999999999999999999999999877678889999999999999999999
Q ss_pred EEEEEEeEecCCccEEEEEeCCCHHHHHHHHHHHHHcCCCceEEEe
Q 015624 315 TEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVEL 360 (403)
Q Consensus 315 T~~tLkl~p~p~~~~~~~~~f~~~~~a~~~~~~i~~~~~~~~~~e~ 360 (403)
|+++||++|.|+......+.++ .+++.+.+.++...++.+...++
T Consensus 160 tevtlkl~P~p~~~~t~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~ 204 (352)
T PRK11282 160 LEVSLKVLPRPRAELTLRLEMD-AAEALRKLNEWGGQPLPISASCW 204 (352)
T ss_pred eEEEEEEEecCceEEEEEEecC-HHHHHHHHHHHhcCCCCCchhhh
Confidence 9999999999988766666665 57778888887777666665443
No 10
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=3.9e-32 Score=282.45 Aligned_cols=205 Identities=22% Similarity=0.279 Sum_probs=177.9
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHH
Q 015624 147 AVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWM 226 (403)
Q Consensus 147 ~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~ 226 (403)
....|..+++|+|++||+++|+.|++++.+|+++|+|||+.|.+.+ ++.+|||++||+|+++|+++++|+|+||+++.
T Consensus 58 ~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t--~g~lldL~~ln~Vl~vD~~~~tVtV~AG~~l~ 135 (541)
T TIGR01676 58 HEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLS--RAGMVNLALMDKVLEVDEEKKRVRVQAGIRVQ 135 (541)
T ss_pred cccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccC--CCeEEEhhhCCCCEEEcCCCCEEEEcCCCCHH
Confidence 3468999999999999999999999999999999999999887765 34579999999999999999999999999999
Q ss_pred HHHHHHhcCCCeecCCCCc-cccccccccccccCCCccccccccceEEEEEEEeCCCeEEEcccccccccccccchhhhh
Q 015624 227 ELNEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLII 305 (403)
Q Consensus 227 ~L~~~l~~~Gl~~p~~~~~-~~TvGG~ia~n~~G~~s~~yG~~~D~V~~levV~~dG~iv~~~~~~~~~~~g~dL~~~~~ 305 (403)
+|.++|.++|+.++..+.. .+||||++++|+||+. .+||.++|+|+++++|++||++++++.. .++|||++++
T Consensus 136 ~L~~~L~~~Glal~n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~-----~~pdLF~Aar 209 (541)
T TIGR01676 136 QLVDAIKEYGITLQNFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKD-----KDPELFFLAR 209 (541)
T ss_pred HHHHHHHHcCCEeccCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCC-----CCHHHHHHHh
Confidence 9999999999999876665 5999999999999994 5899999999999999999999988643 2579999999
Q ss_pred ccCCceeEEEEEEEEeEecCCccEEEEEeCCCHHHHHHHHHHHHHcCCCceEEEec
Q 015624 306 GSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELL 361 (403)
Q Consensus 306 Gs~GtlGIIT~~tLkl~p~p~~~~~~~~~f~~~~~a~~~~~~i~~~~~~~~~~e~~ 361 (403)
|++|+|||||++|||+.|.+....... ..++++..+.+.++....-...-+.+.
T Consensus 210 gslG~LGVItevTLr~~Pa~~l~~~~~--~~~~~e~l~~~~~~~~~~~h~~f~wfP 263 (541)
T TIGR01676 210 CGLGGLGVVAEVTLQCVERQELVEHTF--ISNMKDIKKNHKKFLADNKHVKYLHIP 263 (541)
T ss_pred cCCCceEeEEEEEEEEEeccceeEEEE--ecCHHHHHHHHHHHHhcCCcEEEEEEc
Confidence 999999999999999999887543322 366888888888777665555444444
No 11
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=1.6e-31 Score=274.82 Aligned_cols=196 Identities=24% Similarity=0.318 Sum_probs=173.5
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHH
Q 015624 147 AVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWM 226 (403)
Q Consensus 147 ~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~ 226 (403)
....|.+|++|+|++||+++|+.|+++++|++++|+|||+.+.+. .+|++|||++||+|+++|.++++|+|+||+++.
T Consensus 11 ~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~--~~gvvIdl~~l~~i~~id~~~~~vtV~aG~~l~ 88 (438)
T TIGR01678 11 YSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIAC--TDGFLIHLDKMNKVLQFDKEKKQITVEAGIRLY 88 (438)
T ss_pred ccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCcc--CCeEEEEhhhcCCceEEcCCCCEEEEcCCCCHH
Confidence 346899999999999999999999999999999999999976544 468999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeecCCCCc-cccccccccccccCCCccccccccceEEEEEEEeCCCeEEEcccccccccccccchhhhh
Q 015624 227 ELNEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLII 305 (403)
Q Consensus 227 ~L~~~l~~~Gl~~p~~~~~-~~TvGG~ia~n~~G~~s~~yG~~~D~V~~levV~~dG~iv~~~~~~~~~~~g~dL~~~~~ 305 (403)
+|.++|.++|+.+|+.++. .+||||++++++||. +.+||.++|+|+++++|++||++++++... ++|||++.+
T Consensus 89 ~L~~~L~~~Gl~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~-----~~dlf~a~~ 162 (438)
T TIGR01678 89 QLHEQLDEHGYSMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEER-----NADVFQAAR 162 (438)
T ss_pred HHHHHHHHcCCEecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCC-----ChhHHHHHh
Confidence 9999999999999976665 499999999999997 789999999999999999999999986542 679999999
Q ss_pred ccCCceeEEEEEEEEeEecCCccEEEEEeCCCHHHHHHHHHHHHHcC
Q 015624 306 GSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSG 352 (403)
Q Consensus 306 Gs~GtlGIIT~~tLkl~p~p~~~~~~~~~f~~~~~a~~~~~~i~~~~ 352 (403)
|++|+|||||++|||+.|..... ......++++.++.+.+..+..
T Consensus 163 ~~~G~lGIIt~vtl~l~p~~~l~--~~~~~~~~~~~~~~~~~~~~~~ 207 (438)
T TIGR01678 163 VSLGCLGIIVTVTIQVVPQFHLQ--ETSFVSTLKELLDNWDSHWKSS 207 (438)
T ss_pred cCCCceEeeEEEEEEEEeccceE--EEEecCCHHHHHHHHHHHhhcC
Confidence 99999999999999999976543 3345677888888877665543
No 12
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=99.98 E-value=1.7e-31 Score=273.63 Aligned_cols=191 Identities=23% Similarity=0.283 Sum_probs=167.6
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHH
Q 015624 148 VNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWME 227 (403)
Q Consensus 148 ~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~ 227 (403)
...|.+|++|+|++||+++|+.|++ |++++|+|||+.+.+. .+|++|||++||+|+++|+++++|+||||+++.+
T Consensus 9 ~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~--~~g~~idl~~l~~i~~~d~~~~~v~v~aG~~l~~ 83 (419)
T TIGR01679 9 VAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLAC--TDGTMISLTGLQGVVDVDQPTGLATVEAGTRLGA 83 (419)
T ss_pred cCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCccc--CCCEEEEhhHcCCceeecCCCCEEEEcCCCCHHH
Confidence 4689999999999999999999974 7999999999976543 4689999999999989999999999999999999
Q ss_pred HHHHHhcCCCeecCCCCc-cccccccccccccCCCccccccccceEEEEEEEeCCCeEEEcccccccccccccchhhhhc
Q 015624 228 LNEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIG 306 (403)
Q Consensus 228 L~~~l~~~Gl~~p~~~~~-~~TvGG~ia~n~~G~~s~~yG~~~D~V~~levV~~dG~iv~~~~~~~~~~~g~dL~~~~~G 306 (403)
|.++|.++|+.+|+.++. ..||||++++++||. ..+||.+.|+|++++||++||++++++.. .++||||+++|
T Consensus 84 l~~~L~~~G~~l~~~~~~~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~-----~~~dLf~a~~g 157 (419)
T TIGR01679 84 LGPQLAQRGLGLENQGDIDPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEG-----DDQDMYLAARV 157 (419)
T ss_pred HHHHHHHcCCccccCCCCCCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCC-----CCHHHHHHHHh
Confidence 999999999999987766 689999999999998 56899999999999999999999998654 26899999999
Q ss_pred cCCceeEEEEEEEEeEecCCccEEEEEeCCCHHHHHHHHHHHHHc
Q 015624 307 SEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLS 351 (403)
Q Consensus 307 s~GtlGIIT~~tLkl~p~p~~~~~~~~~f~~~~~a~~~~~~i~~~ 351 (403)
++|+|||||++|||++|.+...... ...+++++.+.+.+++..
T Consensus 158 ~~G~lGVIt~vtl~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~ 200 (419)
T TIGR01679 158 SLGALGVISQVTLQTVALFRLRRRD--WRRPLAQTLERLDEFVDG 200 (419)
T ss_pred CCCceEEEEEEEEEeecceEeEEEE--EecCHHHHHHHHHHHHhc
Confidence 9999999999999999987644332 345677777777766553
No 13
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.98 E-value=3.1e-31 Score=278.58 Aligned_cols=198 Identities=24% Similarity=0.273 Sum_probs=170.2
Q ss_pred cCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeC-CCCCCCcccccC--CCcEEEEcCCCCCcEEeeecCcEEEEccC
Q 015624 146 KAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYG-GATSIEGHTLSP--NGGVCIDLSLMKSVKALHIEDMDVVVEPG 222 (403)
Q Consensus 146 ~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~G-gG~s~~g~~~~~--~~gvvIdl~~mn~i~~id~~~~~v~VeaG 222 (403)
.....|.+|++|+|++||+++|++|+++++||.++| +||++.+.+... ++|++|||++||+|+++|.++.+|+|+||
T Consensus 27 ~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVtV~AG 106 (557)
T TIGR01677 27 RSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVTVESG 106 (557)
T ss_pred cccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEEECCC
Confidence 345689999999999999999999999999999995 689987655442 24699999999999899999999999999
Q ss_pred CCHHHHHHHHhcCCCeecCCCCc-cccccccccccccCCCc-cccccccceEEEEEEEeCCC------eEEEcccccccc
Q 015624 223 IGWMELNEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLA-VRYGTMRDNVINLKVVLANG------DVVKTASRARKS 294 (403)
Q Consensus 223 v~~~~L~~~l~~~Gl~~p~~~~~-~~TvGG~ia~n~~G~~s-~~yG~~~D~V~~levV~~dG------~iv~~~~~~~~~ 294 (403)
+++.+|.++|.++|+.++..+.. ..||||++++|+||+.. ++||.++|+|++++||++|| ++++++..
T Consensus 107 ~~l~~L~~~L~~~Glal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s~~---- 182 (557)
T TIGR01677 107 MSLRELIVEAEKAGLALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILSEG---- 182 (557)
T ss_pred CcHHHHHHHHHHcCCEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeCCC----
Confidence 99999999999999999998765 68999999999999866 58899999999999999998 77776542
Q ss_pred cccccchhhhhccCCceeEEEEEEEEeEecCCccEEEEEeCCCHHHHHHHHHHHHH
Q 015624 295 AAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATML 350 (403)
Q Consensus 295 ~~g~dL~~~~~Gs~GtlGIIT~~tLkl~p~p~~~~~~~~~f~~~~~a~~~~~~i~~ 350 (403)
.++||||+++|++|+|||||++|||++|.+.. .....+...++..+.+.++..
T Consensus 183 -~~~dLf~a~rgslG~lGVVtevTL~~~P~~~~--~~~~~~~~~~~l~~~~~~~~~ 235 (557)
T TIGR01677 183 -DTPNEFNAAKVSLGVLGVISQVTLALQPMFKR--SVTYTMRDDSDFEDQFVTFGK 235 (557)
T ss_pred -CCHHHHHhhccCCCccEeeeEEEEEEEccccc--eEEEEcCCHHHHHHHHHHhhc
Confidence 25799999999999999999999999998763 334556777777776665554
No 14
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.97 E-value=2.1e-31 Score=259.27 Aligned_cols=220 Identities=32% Similarity=0.515 Sum_probs=198.8
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCC----cEEEEcCCCCCcEEeeecCcEEEEccC
Q 015624 147 AVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG----GVCIDLSLMKSVKALHIEDMDVVVEPG 222 (403)
Q Consensus 147 ~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~----gvvIdl~~mn~i~~id~~~~~v~VeaG 222 (403)
....|+.||.|+..+||.+||+.|.+|++-++|.|||||..++-..+.. -+.+|++.||+|+.+|.++.++.+|+|
T Consensus 157 f~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~~eaG 236 (613)
T KOG1233|consen 157 FPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCRAEAG 236 (613)
T ss_pred cCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEEEecC
Confidence 3468999999999999999999999999999999999999876655433 245789999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCeecCCCCc--cccccccccccccCCCccccccccceEEEEEEEeCCCeEEEcccccccccccccc
Q 015624 223 IGWMELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDL 300 (403)
Q Consensus 223 v~~~~L~~~l~~~Gl~~p~~~~~--~~TvGG~ia~n~~G~~s~~yG~~~D~V~~levV~~dG~iv~~~~~~~~~~~g~dL 300 (403)
++-++|.+.|.+.|++..+.|.+ -+|+||++++.++|+.-..||.+.|.|+-+++|+|.|.+.+--.. ..-+.|||+
T Consensus 237 IvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~-PRmS~GPDi 315 (613)
T KOG1233|consen 237 IVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQV-PRMSSGPDI 315 (613)
T ss_pred cchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcC-CcccCCCCc
Confidence 99999999999999997666654 699999999999999999999999999999999999988754332 345679999
Q ss_pred hhhhhccCCceeEEEEEEEEeEecCCccEEEEEeCCCHHHHHHHHHHHHHcCCCceEEEecCHHHHH
Q 015624 301 TRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVR 367 (403)
Q Consensus 301 ~~~~~Gs~GtlGIIT~~tLkl~p~p~~~~~~~~~f~~~~~a~~~~~~i~~~~~~~~~~e~~D~~~~~ 367 (403)
.+.+.|||||||||||+++|++|+|+......+.||++++....++++....++|.++++||..++.
T Consensus 316 hh~IlGSEGTLGVitEvtiKirPiPe~~ryGS~aFPNFEqGV~f~REvA~qRCqPAS~RLMDN~QF~ 382 (613)
T KOG1233|consen 316 HHIILGSEGTLGVITEVTIKIRPIPEVKRYGSFAFPNFEQGVNFFREVAIQRCQPASLRLMDNDQFV 382 (613)
T ss_pred ceEEeccCcceeEEEEEEEEEeechhhhhcCccccCcHHHHHHHHHHHHHHhcCchheeeeccccee
Confidence 9999999999999999999999999999999999999999999999999889999999999997653
No 15
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.96 E-value=8.6e-29 Score=259.35 Aligned_cols=196 Identities=22% Similarity=0.250 Sum_probs=170.0
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHH
Q 015624 147 AVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWM 226 (403)
Q Consensus 147 ~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~ 226 (403)
....|.+++.|+|++||+++|+.|+++++||+++|+|||..+.... ++.+|||++||+|+++|.+.++|+|++|+++.
T Consensus 93 ~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~t--d~glIdL~~l~~Il~vD~e~~~VtV~AG~~l~ 170 (573)
T PLN02465 93 HEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFS--REGMVNLALMDKVLEVDKEKKRVTVQAGARVQ 170 (573)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeC--CCEEEECcCCCCcEEEeCCCCEEEEccCCCHH
Confidence 3468999999999999999999999999999999999998776653 34578999999999999999999999999999
Q ss_pred HHHHHHhcCCCeecCCCCc-cccccccccccccCCCccccccccceEEEEEEEeCCCeEEEcccccccccccccchhhhh
Q 015624 227 ELNEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLII 305 (403)
Q Consensus 227 ~L~~~l~~~Gl~~p~~~~~-~~TvGG~ia~n~~G~~s~~yG~~~D~V~~levV~~dG~iv~~~~~~~~~~~g~dL~~~~~ 305 (403)
+|.++|.++|+.++..+++ .+||||++++++||+. .+||.+.|+|+++++|+++|+++++... .++|||++.+
T Consensus 171 ~L~~~L~~~GLal~n~g~I~~~TIGGaIstGtHGtG-~~~g~i~d~V~~l~lVta~G~vv~~s~~-----~~pdLF~aar 244 (573)
T PLN02465 171 QVVEALRPHGLTLQNYASIREQQIGGFIQVGAHGTG-ARIPPIDEQVVSMKLVTPAKGTIELSKE-----DDPELFRLAR 244 (573)
T ss_pred HHHHHHHHcCCEeccCCCCCCeeecchhhCCCCCcC-CCcCcHhheEEEEEEEECCCCEEEECCC-----CCHHHHhHhh
Confidence 9999999999999988777 7999999999999984 5799999999999999999999987653 2579999999
Q ss_pred ccCCceeEEEEEEEEeEecCCccEEEEEeCCCHHHHHHHHHHHHHcC
Q 015624 306 GSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSG 352 (403)
Q Consensus 306 Gs~GtlGIIT~~tLkl~p~p~~~~~~~~~f~~~~~a~~~~~~i~~~~ 352 (403)
++.|+|||||++|||+.|.+...... ...+.++..+.+.++.+..
T Consensus 245 ~glG~lGVIteVTLql~P~~~L~~~~--~~~~~~~~~~~~~~~~~~~ 289 (573)
T PLN02465 245 CGLGGLGVVAEVTLQCVPAHRLVEHT--FVSNRKEIKKNHKKWLSEN 289 (573)
T ss_pred ccCCCCcEEEEEEEEEEecCceEEEE--EEecHHHHHHHHHHHHHhC
Confidence 99999999999999999987643222 2245677777776666543
No 16
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.96 E-value=5.1e-29 Score=217.30 Aligned_cols=136 Identities=40% Similarity=0.686 Sum_probs=126.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHHH
Q 015624 151 PDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNE 230 (403)
Q Consensus 151 P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~~ 230 (403)
|++|++|++++||++++++|+++++|+.++|+||++.+.+. .+++++|||++||+|+++|+++++++|+||++|.||++
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~-~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~ 79 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSS-DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYE 79 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTS-STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccc-cCCcEEEeeccccccccccccceeEEEeccccchhccc
Confidence 78999999999999999999999999999999999987665 46899999999999889999999999999999999999
Q ss_pred HHhcCCCeecCCC--CccccccccccccccCCCccccccccceEEEEEEEeCCCeEEEc
Q 015624 231 YLEPYGLFFPLDP--GPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKT 287 (403)
Q Consensus 231 ~l~~~Gl~~p~~~--~~~~TvGG~ia~n~~G~~s~~yG~~~D~V~~levV~~dG~iv~~ 287 (403)
+|.++|+.++..+ ..++|+||++++|++|..+..||...|+|+++|+|++||+++++
T Consensus 80 ~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~~ 138 (139)
T PF01565_consen 80 ALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVRC 138 (139)
T ss_dssp HHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEEE
T ss_pred ccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEEe
Confidence 9999999988544 44789999999999999999999999999999999999999986
No 17
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.94 E-value=3.8e-26 Score=224.36 Aligned_cols=164 Identities=18% Similarity=0.269 Sum_probs=140.5
Q ss_pred CcCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCCcEEEEcCC-CCCcEEeeecCcEEEEccCC
Q 015624 145 HKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSL-MKSVKALHIEDMDVVVEPGI 223 (403)
Q Consensus 145 ~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~gvvIdl~~-mn~i~~id~~~~~v~VeaGv 223 (403)
+++++.|+++++|++++||++++++|+++++|++++|+|||+...... -+|++|||++ |+.| +.++.+++|+||+
T Consensus 25 ~~igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g-~~gvvI~l~~~l~~i---~~~~~~v~v~aG~ 100 (298)
T PRK13905 25 FRVGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGG-IRGVVIRLGKGLNEI---EVEGNRITAGAGA 100 (298)
T ss_pred eecCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCC-cceEEEEecCCcceE---EecCCEEEEECCC
Confidence 478899999999999999999999999999999999999998422111 1389999998 8877 3456789999999
Q ss_pred CHHHHHHHHhcCCCe-ecCCCCccccccccccccccCCCccccc-cccceEEEEEEEeCCCeEEEcccccccccccccch
Q 015624 224 GWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYG-TMRDNVINLKVVLANGDVVKTASRARKSAAGYDLT 301 (403)
Q Consensus 224 ~~~~L~~~l~~~Gl~-~p~~~~~~~TvGG~ia~n~~G~~s~~yG-~~~D~V~~levV~~dG~iv~~~~~~~~~~~g~dL~ 301 (403)
.|.+|.+++.++|+. +++..++++||||++++|+ +.|| .++|+|.++++|++||+++++... |++
T Consensus 101 ~~~~L~~~l~~~Gl~gle~~~gipGTVGGai~~Na-----G~~G~~~~d~v~~v~vv~~~G~~~~~~~~--------e~~ 167 (298)
T PRK13905 101 PLIKLARFAAEAGLSGLEFAAGIPGTVGGAVFMNA-----GAYGGETADVLESVEVLDRDGEIKTLSNE--------ELG 167 (298)
T ss_pred cHHHHHHHHHHcCCCcchhccCCCcchhHHHHHcC-----CcCceEhheeEEEEEEEeCCCCEEEEEHH--------HcC
Confidence 999999999999995 7777788899999999994 4587 599999999999999999987532 778
Q ss_pred hhhhccCCc--eeEEEEEEEEeEecC
Q 015624 302 RLIIGSEGT--LGIITEVTLRLQKIP 325 (403)
Q Consensus 302 ~~~~Gs~Gt--lGIIT~~tLkl~p~p 325 (403)
|.++++... +||||+++||+.|..
T Consensus 168 ~~yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 168 FGYRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred CcCccccCCCCCEEEEEEEEEEcCCC
Confidence 888887543 799999999999874
No 18
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.93 E-value=3.7e-25 Score=217.29 Aligned_cols=189 Identities=22% Similarity=0.339 Sum_probs=148.4
Q ss_pred cHHHHHHHHHhcCCCeeeChhhhhhccCCCCCcCcCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccc
Q 015624 112 PQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191 (403)
Q Consensus 112 ~~~~~~~L~~~lg~~v~~~~~~~~~~~~~~~s~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~ 191 (403)
..++.++|++.++.++..+ +.+ ..+++ +++++.|+++++|++++||++++++|+++++|++++|+|||+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~--~~l---~~~tt-~~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNll---- 72 (302)
T PRK14652 3 EATWRDEIARRVRGEVLRD--APL---APRTA-VRVGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTL---- 72 (302)
T ss_pred hHHHHHHHHHhhccccccC--CCc---ccccE-eecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCccee----
Confidence 4578999999887664332 222 22344 4889999999999999999999999999999999999999983
Q ss_pred cCCC---cEEEEcCCC-CCcEEeeecCcEEEEccCCCHHHHHHHHhcCCCe-ecCCCCccccccccccccccCCCccccc
Q 015624 192 SPNG---GVCIDLSLM-KSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYG 266 (403)
Q Consensus 192 ~~~~---gvvIdl~~m-n~i~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~-~p~~~~~~~TvGG~ia~n~~G~~s~~yG 266 (403)
..++ |++|+++++ +.+ +.++.+++|+||+.|.+|.+++.++||. +++..++++||||++.||++ ..||
T Consensus 73 v~d~g~~gvVI~l~~~~~~i---~~~~~~v~v~AG~~~~~L~~~~~~~GL~GlE~l~gIPGTvGGav~mNaG----a~gg 145 (302)
T PRK14652 73 VADAGVRGVVLRLPQDFPGE---STDGGRLVLGAGAPISRLPARAHAHGLVGMEFLAGIPGTLGGAVAMNAG----TKLG 145 (302)
T ss_pred ecCCCEeeEEEEecCCcceE---EecCCEEEEECCCcHHHHHHHHHHcCCcccccccCCCcchhHHHHHcCC----CCce
Confidence 3333 799999764 433 3456799999999999999999999998 88888889999999999953 3566
Q ss_pred cccceEEEEEEEeCCCeEEEcccccccccccccchhhhhccCCceeEEEEEEEEeEecC
Q 015624 267 TMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIP 325 (403)
Q Consensus 267 ~~~D~V~~levV~~dG~iv~~~~~~~~~~~g~dL~~~~~Gs~GtlGIIT~~tLkl~p~p 325 (403)
.++|+|.++++|++|| +.+... ...+|++.+.+.+. + ||||+++||++|.+
T Consensus 146 ei~d~v~~v~vv~~~G-~~~~~~----~e~~f~YR~s~~~~-~--~II~~a~~~L~~~~ 196 (302)
T PRK14652 146 EMKDVVTAVELATADG-AGFVPA----AALGYAYRTCRLPP-G--AVITRVEVRLRPGD 196 (302)
T ss_pred EhhheEEEEEEECCCC-cEEeeh----hhcCcccceeccCC-C--eEEEEEEEEEecCC
Confidence 7999999999999999 444432 22244444444443 3 89999999999864
No 19
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.92 E-value=5.6e-24 Score=209.35 Aligned_cols=188 Identities=19% Similarity=0.308 Sum_probs=148.3
Q ss_pred HHHHHHHHHhcCC-CeeeChhhhhhccCCCCCcCcCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccc
Q 015624 113 QELVDELKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191 (403)
Q Consensus 113 ~~~~~~L~~~lg~-~v~~~~~~~~~~~~~~~s~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~ 191 (403)
++++++|++++++ .+..+ ..... ++++ ++++.|+++++|++++||++++++|+++++|++++|+|||+.
T Consensus 4 ~~~~~~l~~~l~~~~~~~~-~~l~~----~tt~-~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll---- 73 (305)
T PRK12436 4 QEVYEYLSTVLPEGHVKQD-EMLKN----HTHI-KVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVI---- 73 (305)
T ss_pred HHHHHHHHHhcCcCceecC-Ccchh----ccCc-ccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEE----
Confidence 3467888888864 44333 22222 2333 678899999999999999999999999999999999999994
Q ss_pred cCCC---cEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHHHHHhcCCCe-ecCCCCccccccccccccccCCCcccccc
Q 015624 192 SPNG---GVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT 267 (403)
Q Consensus 192 ~~~~---gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~-~p~~~~~~~TvGG~ia~n~~G~~s~~yG~ 267 (403)
..++ |++|+|++|++| +++ +.+++|++|+.|.+|.+++.++|+. ++...++++||||++.+|+ +.||.
T Consensus 74 ~~d~g~~GvvI~l~~l~~i-~~~--~~~v~v~aG~~~~~L~~~~~~~gl~Gle~~~giPGtVGGav~~NA-----GayG~ 145 (305)
T PRK12436 74 IKDGGIRGITVSLIHITGV-TVT--GTTIVAQCGAAIIDVSRIALDHNLTGLEFACGIPGSVGGALYMNA-----GAYGG 145 (305)
T ss_pred EeCCCeeEEEEEeCCcCcE-EEe--CCEEEEEeCCcHHHHHHHHHHcCCccchhhcCCccchhHHHHhcC-----ccchh
Confidence 3333 899999889987 344 5689999999999999999999997 6667778999999999994 45885
Q ss_pred -ccceEEEEEEEeCCCeEEEcccccccccccccchhhhhccCCceeEEEEEEEEeEec
Q 015624 268 -MRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKI 324 (403)
Q Consensus 268 -~~D~V~~levV~~dG~iv~~~~~~~~~~~g~dL~~~~~Gs~GtlGIIT~~tLkl~p~ 324 (403)
+.|.+..++|+++||++++.... ++.++|+-..+ .....||++++||+.|.
T Consensus 146 ~~~dvl~~v~vv~~~G~v~~~~~~--e~~f~YR~s~~----~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 146 EISFVLTEAVVMTGDGELRTLTKE--AFEFGYRKSVF----ANNHYIILEARFELEEG 197 (305)
T ss_pred ehheeeeEEEEEeCCCCEEEEEHH--HhcCcCCCCcC----CCCCEEEEEEEEEEcCC
Confidence 88888899999999999987654 34445553322 22247999999999765
No 20
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=1.6e-23 Score=206.25 Aligned_cols=188 Identities=19% Similarity=0.324 Sum_probs=151.7
Q ss_pred HHHHHHHHHhcCC-CeeeChhhhhhccCCCCCcCcCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccc
Q 015624 113 QELVDELKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191 (403)
Q Consensus 113 ~~~~~~L~~~lg~-~v~~~~~~~~~~~~~~~s~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~ 191 (403)
++++++|++.+++ .+..+ .+.. .++++ ++++.++++++|++++||++++++|+++++|++++|+|||+.
T Consensus 4 ~~~~~~l~~~~~~~~v~~~-~~L~----~~tt~-~iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll---- 73 (307)
T PRK13906 4 KDIYQALQQLIPNEKIKVD-EPLK----RYTYT-KTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNII---- 73 (307)
T ss_pred HHHHHHHHHhcCCCeeecC-Cccc----cceEc-CcCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEe----
Confidence 4578999999864 55544 2221 22333 678899999999999999999999999999999999999984
Q ss_pred cCCC---cEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHHHHHhcCCCe-ecCCCCccccccccccccccCCCccccc-
Q 015624 192 SPNG---GVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYG- 266 (403)
Q Consensus 192 ~~~~---gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~-~p~~~~~~~TvGG~ia~n~~G~~s~~yG- 266 (403)
..++ |++|++++|+++ +++ +.+++|+||+.|.+|.+++.++|+. ++...++++||||++.|| ++.||
T Consensus 74 ~~d~g~~GvvI~l~~l~~i-~~~--~~~v~v~aG~~~~~l~~~~~~~Gl~GlE~~~gIPGtVGGav~mN-----aGayGg 145 (307)
T PRK13906 74 IREGGIRGIVISLLSLDHI-EVS--DDAIIAGSGAAIIDVSRVARDYALTGLEFACGIPGSIGGAVYMN-----AGAYGG 145 (307)
T ss_pred ecCCCcceEEEEecCccce-EEe--CCEEEEECCCcHHHHHHHHHHcCCccchhhcCCCccHhHHHHhh-----CCcchh
Confidence 3333 899999889998 344 4689999999999999999999997 666677889999999999 44585
Q ss_pred cccceEEEEEEEeCCCeEEEcccccccccccccchhhhhccCCceeEEEEEEEEeEec
Q 015624 267 TMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKI 324 (403)
Q Consensus 267 ~~~D~V~~levV~~dG~iv~~~~~~~~~~~g~dL~~~~~Gs~GtlGIIT~~tLkl~p~ 324 (403)
.++|+|.++++|++||++++.... ++.++|+-..+.. . --||++++|+|.|.
T Consensus 146 ~i~D~l~~v~vv~~~G~~~~~~~~--e~~f~YR~S~~~~---~-~~ii~~~~~~l~~~ 197 (307)
T PRK13906 146 EVKDCIDYALCVNEQGSLIKLTTK--ELELDYRNSIIQK---E-HLVVLEAAFTLAPG 197 (307)
T ss_pred hhhhheeEEEEEeCCCCEEEEEHH--HccCcCCcccCCC---C-CEEEEEEEEEECCC
Confidence 699999999999999999987654 5667777543321 1 25999999999863
No 21
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.90 E-value=3.2e-23 Score=202.17 Aligned_cols=167 Identities=20% Similarity=0.295 Sum_probs=140.1
Q ss_pred cCcCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCCcEEEEcCCCCCcEEeeecCcEEEEccCC
Q 015624 144 FHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGI 223 (403)
Q Consensus 144 ~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv 223 (403)
.+++++.|+++++|+|++||++++++|+++++|++++|+|||+..... ..+|++|++.+|+++. +++ +.+++|+||+
T Consensus 6 t~~igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~-~~~gvvi~l~~~~~~~-~~~-~~~v~v~aG~ 82 (284)
T TIGR00179 6 TYKIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDD-GRGGVIINLGKGIDIE-DDE-GEYVHVGGGE 82 (284)
T ss_pred eeecCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccC-CcCeEEEECCCCceEE-Eec-CCEEEEEcCC
Confidence 347899999999999999999999999999999999999999964442 2468999999998874 555 5789999999
Q ss_pred CHHHHHHHHhcCCCe-ecCCCCccccccccccccccCCCcccccc-ccceEEEEEEEeCCCeEEEcccccccccccccch
Q 015624 224 GWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLANGDVVKTASRARKSAAGYDLT 301 (403)
Q Consensus 224 ~~~~L~~~l~~~Gl~-~p~~~~~~~TvGG~ia~n~~G~~s~~yG~-~~D~V~~levV~~dG~iv~~~~~~~~~~~g~dL~ 301 (403)
.|.+|.+++.++||. ++...++++||||++.|| ++.||. +.|.|+++++|++||++++...+ ++.++|+-.
T Consensus 83 ~~~~l~~~~~~~Gl~GlE~l~giPGtvGGai~mN-----AGayG~~i~d~l~~v~vv~~~G~~~~~~~~--~~~f~YR~S 155 (284)
T TIGR00179 83 NWHKLVKYALKNGLSGLEFLAGIPGTVGGAVIMN-----AGAYGVEISEVLVYATILLATGKTEWLTNE--QLGFGYRTS 155 (284)
T ss_pred cHHHHHHHHHHCCCcccccCCCCCchHHHHHHHh-----cccchhehhheEEEEEEEeCCCCEEEEEHH--HccccCCcc
Confidence 999999999999997 888888889999999999 566998 67789999999999999987664 566677754
Q ss_pred hhhhccCCceeEEEEEEEEeEe
Q 015624 302 RLIIGSEGTLGIITEVTLRLQK 323 (403)
Q Consensus 302 ~~~~Gs~GtlGIIT~~tLkl~p 323 (403)
.+.. . ...||++++|++.+
T Consensus 156 ~f~~--~-~~~iil~a~~~l~~ 174 (284)
T TIGR00179 156 IFQH--K-YVGLVLKAEFQLTL 174 (284)
T ss_pred ccCC--C-CcEEEEEEEEEecc
Confidence 4321 1 13699999999933
No 22
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.89 E-value=3e-22 Score=200.54 Aligned_cols=165 Identities=18% Similarity=0.246 Sum_probs=142.3
Q ss_pred CCCcCcCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCC---cEEEEcCCCCCcEEeeecCcEE
Q 015624 141 QNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG---GVCIDLSLMKSVKALHIEDMDV 217 (403)
Q Consensus 141 ~~s~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~---gvvIdl~~mn~i~~id~~~~~v 217 (403)
++++ ++++.|++++.|++++||++++++|+++++|++++|+|||+ +..++ |++|+++ ++.+ +++.++.++
T Consensus 24 ~tt~-~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNl----Lv~D~g~~GvVI~l~-~~~i-~i~~~~~~v 96 (363)
T PRK13903 24 LTTL-RVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNL----VIADDGFDGTVVRVA-TRGV-TVDCGGGLV 96 (363)
T ss_pred ccEe-ecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeE----eECCCCccEEEEEeC-CCcE-EEeCCCCEE
Confidence 3444 88999999999999999999999999999999999999998 34444 7999997 5777 466557799
Q ss_pred EEccCCCHHHHHHHHhcCCCe-ecCCCCccccccccccccccCCCcccccc-ccceEEEEEEEeCC-CeEEEcccccccc
Q 015624 218 VVEPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLAN-GDVVKTASRARKS 294 (403)
Q Consensus 218 ~VeaGv~~~~L~~~l~~~Gl~-~p~~~~~~~TvGG~ia~n~~G~~s~~yG~-~~D~V~~levV~~d-G~iv~~~~~~~~~ 294 (403)
+|++|+.|.+|.+++.++|+. ++...++++||||++.|| ++.||. +.|.|.++++++.+ |++++....
T Consensus 97 ~vgAG~~~~~l~~~a~~~GL~GlE~laGIPGTVGGAv~mN-----aGayG~ei~D~l~sV~vvd~~~G~~~~~~~~---- 167 (363)
T PRK13903 97 RAEAGAVWDDVVARTVEAGLGGLECLSGIPGSAGATPVQN-----VGAYGQEVSDTITRVRLLDRRTGEVRWVPAA---- 167 (363)
T ss_pred EEEcCCCHHHHHHHHHHcCCccccccCCCCcchhhHhhcC-----CChhHHHHhhhEeEEEEEECCCCEEEEEEHH----
Confidence 999999999999999999999 999999999999999999 667898 89999999999965 999986533
Q ss_pred cccccchhhhhcc---CCceeEEEEEEEEeEecC
Q 015624 295 AAGYDLTRLIIGS---EGTLGIITEVTLRLQKIP 325 (403)
Q Consensus 295 ~~g~dL~~~~~Gs---~GtlGIIT~~tLkl~p~p 325 (403)
|+.|.+|+| .+..+|||+++|+|.|..
T Consensus 168 ----el~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 168 ----DLGFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred ----HcceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 666777765 234789999999999874
No 23
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.88 E-value=3.5e-22 Score=195.47 Aligned_cols=190 Identities=18% Similarity=0.268 Sum_probs=151.3
Q ss_pred HHHHHHHHHhcCCCeeeChhhhhhccCCCCCcCcCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCccccc
Q 015624 113 QELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLS 192 (403)
Q Consensus 113 ~~~~~~L~~~lg~~v~~~~~~~~~~~~~~~s~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~ 192 (403)
.++++.|-+-.+. +.. ++.+ .+++++ ++++.+++++.|++++|+++++++|++ ++|+++.|+|||+....-.
T Consensus 3 ~~~~~~~~~~~~~-~~~--~~~L---~~~tt~-~iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g 74 (297)
T PRK14653 3 RKIIETLLKYGND-VFI--NEEM---KCHVSF-KIGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEP 74 (297)
T ss_pred hHHHHHHHHhcCe-ecc--CCcc---cccCEe-eeCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCC
Confidence 4566666655442 322 2222 223444 899999999999999999999999999 9999999999999544433
Q ss_pred CCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHHHHHhcCCCe-ecCCCCccccccccccccccCCCcccccc-ccc
Q 015624 193 PNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRD 270 (403)
Q Consensus 193 ~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~-~p~~~~~~~TvGG~ia~n~~G~~s~~yG~-~~D 270 (403)
. +|++|.+.+|+.+ +++ +..++|+||+.|.+|..++.++||. +++..++|+||||++.|| ++.||. ++|
T Consensus 75 ~-~gvVI~l~~~~~i-~i~--~~~v~v~AG~~l~~L~~~~~~~GL~GlE~l~gIPGTVGGAv~mN-----AGayG~ei~d 145 (297)
T PRK14653 75 M-DFVVVSTERLDDI-FVD--NDKIICESGLSLKKLCLVAAKNGLSGFENAYGIPGSVGGAVYMN-----AGAYGWETAE 145 (297)
T ss_pred c-cEEEEEeCCcCce-EEe--CCEEEEeCCCcHHHHHHHHHHCCCcchhhhcCCchhHHHHHHHh-----CccCchhhhe
Confidence 2 3899999779988 465 4679999999999999999999998 999999999999999999 556999 999
Q ss_pred eEEEEEEEeCCCeEEEcccccccccccccchhhhhccCCceeEEEEEEEEeEecC
Q 015624 271 NVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIP 325 (403)
Q Consensus 271 ~V~~levV~~dG~iv~~~~~~~~~~~g~dL~~~~~Gs~GtlGIIT~~tLkl~p~p 325 (403)
+|.++++++ +|++++...+ ++.++|+ +....+++.+ ||++++|+|.|.+
T Consensus 146 ~l~~V~~~d-~g~v~~~~~~--e~~f~YR--~S~~~~~~~~-iI~~a~f~L~~~~ 194 (297)
T PRK14653 146 NIVEVVAYD-GKKIIRLGKN--EIKFSYR--NSIFKEEKDL-IILRVTFKLKKGN 194 (297)
T ss_pred eEEEEEEEC-CCEEEEEchh--hccccCc--cccCCCCCcE-EEEEEEEEEecCC
Confidence 999999999 7888877554 4545554 4444555555 9999999998854
No 24
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.88 E-value=5.6e-22 Score=197.42 Aligned_cols=183 Identities=23% Similarity=0.268 Sum_probs=154.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHH
Q 015624 149 NIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMEL 228 (403)
Q Consensus 149 ~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L 228 (403)
.++.-|-+|++++||.++|+.|++++.++++.|.||+..+-.+. +|.+|++++||+++++|++..+|+||+|+++.+|
T Consensus 48 c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ct--dg~lisl~~lnkVv~~dpe~~tvTV~aGirlrQL 125 (518)
T KOG4730|consen 48 CKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCT--DGLLISLDKLNKVVEFDPELKTVTVQAGIRLRQL 125 (518)
T ss_pred hhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceec--cccEEEhhhhccceeeCchhceEEeccCcCHHHH
Confidence 45667889999999999999999999999999999999877654 5699999999999999999999999999999999
Q ss_pred HHHHhcCCCeecCCCCc-cccccccccccccCCCccccccccceEEEEEEEeCCCeEEEcccccccccccccchhhhhcc
Q 015624 229 NEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGS 307 (403)
Q Consensus 229 ~~~l~~~Gl~~p~~~~~-~~TvGG~ia~n~~G~~s~~yG~~~D~V~~levV~~dG~iv~~~~~~~~~~~g~dL~~~~~Gs 307 (403)
++++++.|+.+|..+.+ ..+|||++.+++||+...-++.....+.-..++.+||.++.+.... .+++|++.+-|
T Consensus 126 ie~~~~~GlsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~-----dpe~F~AAkvS 200 (518)
T KOG4730|consen 126 IEELAKLGLSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEK-----DPELFNAAKVS 200 (518)
T ss_pred HHHHHhcCccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccC-----CHHHHhhhhhc
Confidence 99999999999998876 7999999999999985443555555555555666799988775442 57999999999
Q ss_pred CCceeEEEEEEEEeEecCCccEEEEEeCCCHHH
Q 015624 308 EGTLGIITEVTLRLQKIPQHSVVATCNFPTIKD 340 (403)
Q Consensus 308 ~GtlGIIT~~tLkl~p~p~~~~~~~~~f~~~~~ 340 (403)
.|.||||.++||++.|.-+.... ..+.+..+
T Consensus 201 LG~LGVIs~VTl~~vp~Fk~s~t--~~v~n~~d 231 (518)
T KOG4730|consen 201 LGVLGVISQVTLSVVPAFKRSLT--YVVTNDSD 231 (518)
T ss_pred ccceeEEEEEEEEEEecceeeeE--EEEechHH
Confidence 99999999999999997654333 33344444
No 25
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=4.7e-21 Score=187.79 Aligned_cols=172 Identities=19% Similarity=0.212 Sum_probs=139.2
Q ss_pred CcCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCCcEEEEcCCCC-CcEEeeecCcEEEEccCC
Q 015624 145 HKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMK-SVKALHIEDMDVVVEPGI 223 (403)
Q Consensus 145 ~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~gvvIdl~~mn-~i~~id~~~~~v~VeaGv 223 (403)
+++++.++++++|++++||++++++|+++++|+.++|+|||+....-. .+|++|++++++ ++. .+.++.+++|++|+
T Consensus 15 ~~iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g-~~GvVI~l~~~~~~i~-~~~~~~~v~v~AG~ 92 (295)
T PRK14649 15 WRIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEG-FDGLVARYRGQRWELH-EHGDTAEVWVEAGA 92 (295)
T ss_pred eeeCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCC-cCeEEEEecCCCcEEE-EeCCcEEEEEEcCC
Confidence 489999999999999999999999999999999999999999432211 248999998754 553 44444489999999
Q ss_pred CHHHHHHHHhcCCCe-ecCCCCccccccccccccccCCCcccccc-ccceEEEEEEEeCCCeEEEcccccccccccccch
Q 015624 224 GWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLANGDVVKTASRARKSAAGYDLT 301 (403)
Q Consensus 224 ~~~~L~~~l~~~Gl~-~p~~~~~~~TvGG~ia~n~~G~~s~~yG~-~~D~V~~levV~~dG~iv~~~~~~~~~~~g~dL~ 301 (403)
.|.+|.+++.++||. +++..++|+||||++.|| ++.||. +.|.|.++++++.+|++++.... ++.++|+-.
T Consensus 93 ~~~~l~~~~~~~GL~GlE~l~GIPGTvGGa~~mN-----aGayg~ei~d~l~~V~~~~~~g~~~~~~~~--el~f~YR~S 165 (295)
T PRK14649 93 PMAGTARRLAAQGWAGLEWAEGLPGTIGGAIYGN-----AGCYGGDTATVLIRAWLLLNGSECVEWSVH--DFAYGYRTS 165 (295)
T ss_pred cHHHHHHHHHHcCCccccccCCCCcchhHHHHhh-----ccccceEhheeEEEEEEEeCCCCEEEEeHH--HcCccccee
Confidence 999999999999999 999999999999999999 667887 99999999999999999987554 556677643
Q ss_pred hhhhccCCc----eeEEEEEEEEeEecC
Q 015624 302 RLIIGSEGT----LGIITEVTLRLQKIP 325 (403)
Q Consensus 302 ~~~~Gs~Gt----lGIIT~~tLkl~p~p 325 (403)
.+.....+. --||++++|++.|..
T Consensus 166 ~~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 166 VLKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred ecccccccccccCCeEEEEEEEEECCCC
Confidence 332210011 139999999997753
No 26
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=1.2e-19 Score=175.15 Aligned_cols=165 Identities=22% Similarity=0.392 Sum_probs=143.0
Q ss_pred cCcCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCC---cEEEEcCCCCCcEEeeecCcEEEEc
Q 015624 144 FHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG---GVCIDLSLMKSVKALHIEDMDVVVE 220 (403)
Q Consensus 144 ~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~---gvvIdl~~mn~i~~id~~~~~v~Ve 220 (403)
++++++.++.++.|++.+|+.++++++.+.++|+.+.|+|+|+ +..++ +++|.+.+++.+ +++.++..++|+
T Consensus 14 tfriGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNl----Lv~d~g~~gvvi~~~~~~~~-~~~~~~~~i~a~ 88 (291)
T COG0812 14 TFRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNL----LVRDGGIGGVVIKLGKLNFI-EIEGDDGLIEAG 88 (291)
T ss_pred eEecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceE----EEecCCCceEEEEcccccce-eeeccCCeEEEc
Confidence 3489999999999999999999999999999999999999997 44444 788988877776 466666699999
Q ss_pred cCCCHHHHHHHHhcCCCe-ecCCCCccccccccccccccCCCcccccc-ccceEEEEEEEeCCCeEEEcccccccccccc
Q 015624 221 PGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLANGDVVKTASRARKSAAGY 298 (403)
Q Consensus 221 aGv~~~~L~~~l~~~Gl~-~p~~~~~~~TvGG~ia~n~~G~~s~~yG~-~~D~V~~levV~~dG~iv~~~~~~~~~~~g~ 298 (403)
+|+.|.+|.+++.++|+. |+...++|+||||++.|| ++.||. ++|.+.++++++.+|++.+.... ++.++|
T Consensus 89 aG~~~~~l~~~~~~~gl~GlE~l~gIPGsvGgav~mN-----aGAyG~Ei~d~~~~v~~ld~~G~~~~l~~~--el~f~Y 161 (291)
T COG0812 89 AGAPWHDLVRFALENGLSGLEFLAGIPGSVGGAVIMN-----AGAYGVEISDVLVSVEVLDRDGEVRWLSAE--ELGFGY 161 (291)
T ss_pred cCCcHHHHHHHHHHcCCcchhhhcCCCcccchhhhcc-----CcccccchheeEEEEEEEcCCCCEEEEEHH--HhCccc
Confidence 999999999999999999 999999999999999999 789999 99999999999999999988665 455677
Q ss_pred cchhhhhccCCceeEEEEEEEEeEec
Q 015624 299 DLTRLIIGSEGTLGIITEVTLRLQKI 324 (403)
Q Consensus 299 dL~~~~~Gs~GtlGIIT~~tLkl~p~ 324 (403)
+-.-+-. +. .||++++|+|.|.
T Consensus 162 R~S~f~~--~~--~vvl~v~f~L~~~ 183 (291)
T COG0812 162 RTSPFKK--EY--LVVLSVEFKLTKG 183 (291)
T ss_pred ccCcCCC--CC--EEEEEEEEEeCCC
Confidence 6433321 11 7999999999875
No 27
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.83 E-value=1.1e-19 Score=177.62 Aligned_cols=164 Identities=20% Similarity=0.292 Sum_probs=140.1
Q ss_pred CcCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCC----cEEEEcCCCCCcEEeeecCcEEEEc
Q 015624 145 HKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG----GVCIDLSLMKSVKALHIEDMDVVVE 220 (403)
Q Consensus 145 ~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~----gvvIdl~~mn~i~~id~~~~~v~Ve 220 (403)
+++++.++.++.|++.+|+++++++++++++|+.+.|+|||+ +..|+ |++|.+.+|+.+ +++ +..++|+
T Consensus 27 ~~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNl----Lv~D~g~~~g~vi~~~~~~~i-~~~--~~~v~a~ 99 (302)
T PRK14650 27 YKIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNI----LINDEEEIDFPIIYTGHLNKI-EIH--DNQIVAE 99 (302)
T ss_pred eeeCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEE----EEECCCccceEEEEECCcCcE-EEe--CCEEEEE
Confidence 489999999999999999999999999999999999999998 44444 578888668887 354 3579999
Q ss_pred cCCCHHHHHHHHhcCCCe-ecCCCCccccccccccccccCCCcccccc-ccceEEEEEEEeCCCeEEEcccccccccccc
Q 015624 221 PGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLANGDVVKTASRARKSAAGY 298 (403)
Q Consensus 221 aGv~~~~L~~~l~~~Gl~-~p~~~~~~~TvGG~ia~n~~G~~s~~yG~-~~D~V~~levV~~dG~iv~~~~~~~~~~~g~ 298 (403)
+|+.|.+|..++.++||. +++..++|+||||++.|| ++.||. +.|.|.++++++.+|++++.... ++.++|
T Consensus 100 AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mN-----AGayG~ei~d~l~sV~~~d~~g~~~~~~~~--e~~f~Y 172 (302)
T PRK14650 100 CGTNFEDLCKFALQNELSGLEFIYGLPGTLGGAIWMN-----ARCFGNEISEILDKITFIDEKGKTICKKFK--KEEFKY 172 (302)
T ss_pred eCCcHHHHHHHHHHcCCchhhhhcCCCcchhHHHHhh-----CCccccchheeEEEEEEEECCCCEEEEEHH--HcCccc
Confidence 999999999999999999 999999999999999999 778998 99999999999999999876554 566777
Q ss_pred cchhhhhccCCceeEEEEEEEEeEecCC
Q 015624 299 DLTRLIIGSEGTLGIITEVTLRLQKIPQ 326 (403)
Q Consensus 299 dL~~~~~Gs~GtlGIIT~~tLkl~p~p~ 326 (403)
+-..+-. . -.||++++|+|.|.++
T Consensus 173 R~S~f~~--~--~~iIl~a~f~L~~~~~ 196 (302)
T PRK14650 173 KISPFQN--K--NTFILKATLNLKKGNK 196 (302)
T ss_pred ccccCCC--C--CEEEEEEEEEEcCCCH
Confidence 7544321 1 2599999999987643
No 28
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.82 E-value=2.3e-19 Score=177.76 Aligned_cols=169 Identities=17% Similarity=0.184 Sum_probs=139.2
Q ss_pred cCcCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCCcEEEEcCCCCCcEEee-ecC--cEEEEc
Q 015624 144 FHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALH-IED--MDVVVE 220 (403)
Q Consensus 144 ~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~id-~~~--~~v~Ve 220 (403)
.+++++.++.++.|+|++|+++++++|+++++|+++.|+|||+.-.. . -.|++|.+ +|+.+. ++ .++ ..++|+
T Consensus 14 t~riGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~-~~g~vI~~-~~~~~~-~~~~~~~~~~v~a~ 89 (334)
T PRK00046 14 TFGIDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-D-FDGTVLLN-RIKGIE-VLSEDDDAWYLHVG 89 (334)
T ss_pred eeccCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-C-CCEEEEEe-cCCceE-EEecCCCeEEEEEE
Confidence 34899999999999999999999999999999999999999984222 1 24888887 588874 42 222 379999
Q ss_pred cCCCHHHHHHHHhcCCCe-ecCCCCccccccccccccccCCCcccccc-ccceEEEEEEEeCC-CeEEEccccccccccc
Q 015624 221 PGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLAN-GDVVKTASRARKSAAG 297 (403)
Q Consensus 221 aGv~~~~L~~~l~~~Gl~-~p~~~~~~~TvGG~ia~n~~G~~s~~yG~-~~D~V~~levV~~d-G~iv~~~~~~~~~~~g 297 (403)
+|+.|.+|.+++.++||. ++...++|+||||++.|| ++.||. +.|.|.++++++.+ |++++.... ++.++
T Consensus 90 AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mN-----aGayG~ei~d~l~~V~v~d~~~g~~~~~~~~--e~~f~ 162 (334)
T PRK00046 90 AGENWHDLVLWTLQQGMPGLENLALIPGTVGAAPIQN-----IGAYGVELKDVCDYVEALDLATGEFVRLSAA--ECRFG 162 (334)
T ss_pred cCCcHHHHHHHHHHcCchhhHHhcCCCcchhHHHHhc-----CCcCcccHheeEEEEEEEECCCCcEEEEEHH--HcCcc
Confidence 999999999999999999 999999999999999999 778998 99999999999987 999877654 56667
Q ss_pred ccchhhhhccCCceeEEEEEEEEeEec
Q 015624 298 YDLTRLIIGSEGTLGIITEVTLRLQKI 324 (403)
Q Consensus 298 ~dL~~~~~Gs~GtlGIIT~~tLkl~p~ 324 (403)
|+-..+-.. .-.--||++++|+|.|.
T Consensus 163 YR~S~f~~~-~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 163 YRDSIFKHE-YPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cccccCCCC-CcCCEEEEEEEEEecCC
Confidence 775443211 00124999999999885
No 29
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.78 E-value=2.7e-18 Score=170.30 Aligned_cols=172 Identities=17% Similarity=0.268 Sum_probs=137.1
Q ss_pred CCCcCcCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCC---cEEEEcCCCCCcEEee--ecC-
Q 015624 141 QNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG---GVCIDLSLMKSVKALH--IED- 214 (403)
Q Consensus 141 ~~s~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~---gvvIdl~~mn~i~~id--~~~- 214 (403)
++++ ++++.++.++.|++.+|+++++++++++++|+++.|+|+|+ +..|+ |++|.+.+|+.+. +. .++
T Consensus 21 ~tT~-rIGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNl----L~~D~g~~G~VI~l~~~~~i~-i~~~~~~~ 94 (354)
T PRK14648 21 RCSF-RIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNV----LIADEGVPGLMLSLRRFRSLH-TQTQRDGS 94 (354)
T ss_pred ccee-eeCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEE----EEeCCCccEEEEEeCCcCceE-EeeccCCc
Confidence 3444 89999999999999999999999999999999999999998 44443 8999986788874 31 133
Q ss_pred cEEEEccCCCHHHHHHHHhcCCCe-ecCCCCccccccccccccccCCCcccccc-ccceEEEEEEE--------------
Q 015624 215 MDVVVEPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVV-------------- 278 (403)
Q Consensus 215 ~~v~VeaGv~~~~L~~~l~~~Gl~-~p~~~~~~~TvGG~ia~n~~G~~s~~yG~-~~D~V~~levV-------------- 278 (403)
..++|++|+.|.+|.+++.++||. ++...++|+||||++.|| ++.||. +.|.|.+++++
T Consensus 95 ~~v~agAG~~~~~Lv~~~~~~gl~GlE~laGIPGTVGGAv~mN-----AGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~ 169 (354)
T PRK14648 95 VLVHAGAGLPVAALLAFCAHHALRGLETFAGLPGSVGGAAYMN-----ARCYGRAIADCFHSARTLVLHPVRSRAKELPE 169 (354)
T ss_pred EEEEEEeCCcHHHHHHHHHHcCCcchhhhcCCCcchhhHhhhc-----CCccceEhhheEEEEEEEeccCcccccccccc
Confidence 479999999999999999999999 999999999999999999 789998 99999999999
Q ss_pred ------eCCCeE-------------EEcccccccccccccchhhhhccCC----ceeEEEEEEEEeEecC
Q 015624 279 ------LANGDV-------------VKTASRARKSAAGYDLTRLIIGSEG----TLGIITEVTLRLQKIP 325 (403)
Q Consensus 279 ------~~dG~i-------------v~~~~~~~~~~~g~dL~~~~~Gs~G----tlGIIT~~tLkl~p~p 325 (403)
+.+|++ .+... .++.++|+-..+...... .--||++++|+|.|.+
T Consensus 170 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 170 VRKNAQDKRGECLGLDGGPFTCSSFQTVFA--RAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred cccccccCCCceecccccccccccceEecH--HHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 456776 33322 245567765443221100 0149999999998754
No 30
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.69 E-value=3.9e-16 Score=150.79 Aligned_cols=150 Identities=19% Similarity=0.230 Sum_probs=124.5
Q ss_pred CcCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCC---cEEEEcCC-CCCcEEeeecCcEEEEc
Q 015624 145 HKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG---GVCIDLSL-MKSVKALHIEDMDVVVE 220 (403)
Q Consensus 145 ~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~---gvvIdl~~-mn~i~~id~~~~~v~Ve 220 (403)
+++++.++.++ |++.+|+++++ ++|+.+.|+|||+ +..|+ |++|.+.+ ++.+ ++ ++ +|+
T Consensus 15 ~riGG~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNl----L~~D~g~~g~vI~l~~~~~~~-~~--~~---~a~ 77 (273)
T PRK14651 15 LGVGGPAELWT-VETHEQLAEAT------EAPYRVLGGGSNL----LVSDAGVPERVIRLGGEFAEW-DL--DG---WVG 77 (273)
T ss_pred eecCceEEEEe-cCCHHHHHHHH------CCCeEEEeceeEE----EEcCCCcceEEEEECCcceeE-eE--CC---EEE
Confidence 48899999999 99999999987 5899999999998 44443 78888755 4544 22 33 699
Q ss_pred cCCCHHHHHHHHhcCCCe-ecCCCCccccccccccccccCCCcccccc-ccceEEEEEEEeCCCeEEEcccccccccccc
Q 015624 221 PGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLANGDVVKTASRARKSAAGY 298 (403)
Q Consensus 221 aGv~~~~L~~~l~~~Gl~-~p~~~~~~~TvGG~ia~n~~G~~s~~yG~-~~D~V~~levV~~dG~iv~~~~~~~~~~~g~ 298 (403)
+|+.|.+|.+++.++|+. ++...++|+||||++.|| ++.||. +.|.|.++++++ +|++++.... ++.++|
T Consensus 78 AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mN-----aGayG~ei~d~l~~V~~~~-~g~~~~~~~~--e~~f~Y 149 (273)
T PRK14651 78 GGVPLPGLVRRAARLGLSGLEGLVGIPAQVGGAVKMN-----AGTRFGEMADALHTVEIVH-DGGFHQYSPD--ELGFGY 149 (273)
T ss_pred CCCcHHHHHHHHHHCCCcchhhhcCCCcchhhHHHhh-----CCccccChheeEEEEEEEE-CCCEEEEEHH--Hccccc
Confidence 999999999999999998 999999999999999999 778998 999999999997 8999887654 566677
Q ss_pred cchhhhhccCCceeEEEEEEEEeEec
Q 015624 299 DLTRLIIGSEGTLGIITEVTLRLQKI 324 (403)
Q Consensus 299 dL~~~~~Gs~GtlGIIT~~tLkl~p~ 324 (403)
+-..+- .. -||++++|+|.|.
T Consensus 150 R~S~~~----~~-~iIl~a~f~l~~~ 170 (273)
T PRK14651 150 RHSGLP----PG-HVVTRVRLKLRPS 170 (273)
T ss_pred cccCCC----CC-EEEEEEEEEECCC
Confidence 754332 11 4999999999775
No 31
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.61 E-value=1.3e-15 Score=149.44 Aligned_cols=145 Identities=23% Similarity=0.349 Sum_probs=127.9
Q ss_pred EEcCCCCCcEEeeecCcEEEEccCCCHHHHHHHHhcCCCeecCCCCc-cccccccccccccCCCccccccccceEEEEEE
Q 015624 199 IDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLAVRYGTMRDNVINLKV 277 (403)
Q Consensus 199 Idl~~mn~i~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~p~~~~~-~~TvGG~ia~n~~G~~s~~yG~~~D~V~~lev 277 (403)
|++..+..|+++|.+.++|+|||+++++++.++|.+.|+++|+.+-. ..|+||.+.+-|.-+.+.+||...|.+.+.||
T Consensus 106 v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~EldDlTvGGLinG~Gies~ShkyGlfq~~~~aYEv 185 (543)
T KOG1262|consen 106 VPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPELDDLTVGGLINGVGIESSSHKYGLFQHICTAYEV 185 (543)
T ss_pred CCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeecccccceecceeeecccccccchhhhHHhhhheeEE
Confidence 44555678889999999999999999999999999999999998876 69999999877777889999999999999999
Q ss_pred EeCCCeEEEcccccccccccccchhhhhccCCceeEEEEEEEEeEecCCccEEEEEeCCCHHHHHHHHHH
Q 015624 278 VLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIA 347 (403)
Q Consensus 278 V~~dG~iv~~~~~~~~~~~g~dL~~~~~Gs~GtlGIIT~~tLkl~p~p~~~~~~~~~f~~~~~a~~~~~~ 347 (403)
|++||+++++.++. ...|||.++-.|+||||....+++|+.|..+......+.....++..+-+.+
T Consensus 186 VladGelv~~t~dn----e~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvkltyip~~~l~e~c~k~~e 251 (543)
T KOG1262|consen 186 VLADGELVRVTPDN----EHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVKLTYIPVHGLDEYCKKITE 251 (543)
T ss_pred EecCCeEEEecCCc----ccCceEEEcccccCchheeeeeEEEEEeccceEEEEEEecccHHHHHHHHHh
Confidence 99999999886543 3569999999999999999999999999999888888888887776665544
No 32
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.52 E-value=4.1e-14 Score=135.59 Aligned_cols=146 Identities=15% Similarity=0.120 Sum_probs=116.7
Q ss_pred cCcCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCC--cEEEEcCCCCCcEEeeecCcEEEEcc
Q 015624 144 FHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG--GVCIDLSLMKSVKALHIEDMDVVVEP 221 (403)
Q Consensus 144 ~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~--gvvIdl~~mn~i~~id~~~~~v~Vea 221 (403)
.+++++.++.++.|++.+ + ++|+.+.|+|||+ +..|+ +.++-+++|+.+ ++ ++..++|++
T Consensus 12 t~~iGG~A~~~~~~~~~~-l----------~~p~~vlG~GSNl----Lv~D~g~~~vv~~~~~~~~-~~--~~~~v~~~A 73 (257)
T PRK13904 12 SVKIGPPLEVLVLEEIDD-F----------SQDGQIIGGANNL----LISPNPKNLAILGKNFDYI-KI--DGECLEIGG 73 (257)
T ss_pred ceeECceEEEEEEechhh-h----------CCCeEEEeceeEE----EEecCCccEEEEccCcCeE-EE--eCCEEEEEc
Confidence 348999999999998888 6 8999999999998 44332 334434567776 34 345799999
Q ss_pred CCCHHHHHHHHhcCCCe-ecCCCCccccccccccccccCCCcccccc-ccceEEEEEEEeCCCeEEEccccccccccccc
Q 015624 222 GIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLANGDVVKTASRARKSAAGYD 299 (403)
Q Consensus 222 Gv~~~~L~~~l~~~Gl~-~p~~~~~~~TvGG~ia~n~~G~~s~~yG~-~~D~V~~levV~~dG~iv~~~~~~~~~~~g~d 299 (403)
|+.|.+|.+++.++|+. +++..++|+||||++.|| ++.||. +.|.|.++++++ |+ ... .++.++|+
T Consensus 74 G~~l~~l~~~~~~~gl~GlE~l~gIPGtVGGAv~mN-----aGa~g~ei~d~l~~V~~~~--~~---~~~--~e~~f~YR 141 (257)
T PRK13904 74 ATKSGKIFNYAKKNNLGGFEFLGKLPGTLGGLVKMN-----AGLKEYEISNNLESICTNG--GW---IEK--EDIGFGYR 141 (257)
T ss_pred CCcHHHHHHHHHHCCCchhhhhcCCCccHHHHHHhc-----CCcCccchheeEEEEEEEe--eE---EeH--HHCccccc
Confidence 99999999999999999 999999999999999999 778998 999999999998 42 222 24566776
Q ss_pred chhhhhccCCceeEEEEEEEEeEecCC
Q 015624 300 LTRLIIGSEGTLGIITEVTLRLQKIPQ 326 (403)
Q Consensus 300 L~~~~~Gs~GtlGIIT~~tLkl~p~p~ 326 (403)
-..+- .||++++|+|.|.++
T Consensus 142 ~S~~~-------~iIl~a~f~l~~~~~ 161 (257)
T PRK13904 142 SSGIN-------GVILEARFKKTHGFD 161 (257)
T ss_pred CcCCC-------cEEEEEEEEECCCCH
Confidence 54321 399999999988643
No 33
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=97.27 E-value=0.0002 Score=65.01 Aligned_cols=102 Identities=23% Similarity=0.241 Sum_probs=65.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCccccc--CCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHH
Q 015624 151 PDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLS--PNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMEL 228 (403)
Q Consensus 151 P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~--~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L 228 (403)
+..+++|+|.+|+.++++ .+-...+.+|||.+.-.--. .....+||++++.++..++.+++.+++++++++.++
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l 77 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSEL 77 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHH
Confidence 346789999999999988 22257889999987311100 123589999988777777778899999999999999
Q ss_pred HHHHhcCCCeec---------CCCCc--cccccccccccc
Q 015624 229 NEYLEPYGLFFP---------LDPGP--GATIGGMCATRC 257 (403)
Q Consensus 229 ~~~l~~~Gl~~p---------~~~~~--~~TvGG~ia~n~ 257 (403)
.+.-.-... +| ..+.. .+|+||++++..
T Consensus 78 ~~~~~~~~~-~p~L~~~~~~ias~~IRn~aTiGGNl~~~~ 116 (171)
T PF00941_consen 78 EESPLIQQY-FPALAQAARRIASPQIRNRATIGGNLCNAS 116 (171)
T ss_dssp HHHHHHHHH-HHHHHHHHCTSS-HHHHTT-BHHHHHHHTB
T ss_pred hhcchhhhh-HHHHHHHHHHhCCHhHeeeeeeccccccCc
Confidence 887111110 11 11111 499999997663
No 34
>PRK09799 putative oxidoreductase; Provisional
Probab=97.16 E-value=0.00067 Score=65.63 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=68.4
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHHHHH
Q 015624 153 IIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYL 232 (403)
Q Consensus 153 ~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~~~l 232 (403)
-++.|+|.+|+.++++- ++-...+.+|||.+.-..-.....++||++++ .+..+..+++.+++++++++.++.+..
T Consensus 4 ~y~~P~sl~Ea~~ll~~---~~~~a~ilAGGT~L~~~~~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~~ 79 (258)
T PRK09799 4 QFFRPDSVEQALELKRR---YQDEAVWFAGGSKLNATPTRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDAR 79 (258)
T ss_pred cEeCCCCHHHHHHHHHh---CCCCCEEEecCCChHhhhCCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhCc
Confidence 46799999999887753 43335789999998321111134689999987 777777788899999999999998753
Q ss_pred hcC-CCe--ec--CCCCc--ccccccccccc
Q 015624 233 EPY-GLF--FP--LDPGP--GATIGGMCATR 256 (403)
Q Consensus 233 ~~~-Gl~--~p--~~~~~--~~TvGG~ia~n 256 (403)
.-. .+. +- .++.+ .+|+||++++.
T Consensus 80 ~~~~~L~~a~~~vas~qIRN~aTiGGNl~~a 110 (258)
T PRK09799 80 FIPAALREALGFVYSRHLRNQSTIGGEIAAR 110 (258)
T ss_pred ccHHHHHHHHHHhCCHHHhccchhHHHhhcC
Confidence 211 011 00 11112 49999999876
No 35
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=96.92 E-value=0.0015 Score=63.28 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=66.4
Q ss_pred EEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHHHHHh
Q 015624 154 IVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLE 233 (403)
Q Consensus 154 Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~~~l~ 233 (403)
+++|+|.+|..++++ +++-.-.+.+|||.+.-.....+..++||++++ .+..|..+++.+++++++++.++.+...
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~~ 79 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPTRTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNEL 79 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhcccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCcc
Confidence 678999999888765 343235678999998422111223688999987 6766777778899999999999975321
Q ss_pred cCC-Ce----ecCCCCc--cccccccccccc
Q 015624 234 PYG-LF----FPLDPGP--GATIGGMCATRC 257 (403)
Q Consensus 234 ~~G-l~----~p~~~~~--~~TvGG~ia~n~ 257 (403)
-.. +. .-..+.. -+|+||++++..
T Consensus 80 ~~~~L~~aa~~va~~qIRN~gTlGGNl~~a~ 110 (257)
T TIGR03312 80 TPAALKEALGFVYSRHIRNQATIGGEIAAFQ 110 (257)
T ss_pred hHHHHHHHHHHhCCHHHhccccHHHHhhcCC
Confidence 000 10 0012222 499999998763
No 36
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=96.82 E-value=0.00046 Score=64.66 Aligned_cols=69 Identities=35% Similarity=0.450 Sum_probs=57.5
Q ss_pred cCCccEEEEEeCCCHHHHHHHHHHHHHcCCCceEEEecCHHHHHHHHHhhCCC--CCCCCceEEEEcCChh
Q 015624 324 IPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKN--LPELPTLMFEFIGTRE 392 (403)
Q Consensus 324 ~p~~~~~~~~~f~~~~~a~~~~~~i~~~~~~~~~~e~~D~~~~~~~~~~~~~~--~p~~~~l~~e~~g~~~ 392 (403)
+|+......+.|++++++.+++.++++.++.|.++|++|+..++......+.. .+..+.+++||+|+++
T Consensus 1 lPe~~~~~~~~f~~~~~a~~~~~~i~~~g~~p~a~el~d~~~~~~~~~~~~~~~~~~~~~~llv~~~g~~~ 71 (248)
T PF02913_consen 1 LPEARATALVFFPSFEDAADAVRAIMQSGIIPSAIELLDSAALKLALEHWGEPLPPEGGAVLLVEFEGSDE 71 (248)
T ss_dssp --SEEEEEEEEESCHHHHHHHHCCCCHHCSSCCECCCCHHHHHHHHHHSEEETSSTTTSEEEEEECCCHHH
T ss_pred CCcceEEEEEEcCCHHHHHHHHHHHHHcCCCceEEeeeCHHHHHHHHhhcCCCccCCcccEEEEEECCCcH
Confidence 47888889999999999999999999999999999999999998887765542 2334689999999985
No 37
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=96.57 E-value=0.0047 Score=64.76 Aligned_cols=102 Identities=14% Similarity=0.125 Sum_probs=71.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCccc-c-cCCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHH
Q 015624 151 PDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHT-L-SPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMEL 228 (403)
Q Consensus 151 P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~-~-~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L 228 (403)
..-+++|+|.+|+.++++- +. ...+.+|||.+.-.. . ..+...+||++++..+..+..+++.+++++++++.++
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el 267 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDA 267 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHH
Confidence 4568999999999988764 32 357799999973111 0 0123689999988777667777888999999999999
Q ss_pred HHHHhcC--CCe--ec--CCCCc--ccccccccccc
Q 015624 229 NEYLEPY--GLF--FP--LDPGP--GATIGGMCATR 256 (403)
Q Consensus 229 ~~~l~~~--Gl~--~p--~~~~~--~~TvGG~ia~n 256 (403)
.+.+.++ .+. +. ..+.+ .+||||++++.
T Consensus 268 ~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~a 303 (467)
T TIGR02963 268 YAALAKRYPELGELLRRFASLQIRNAGTLGGNIANG 303 (467)
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHcCceecccccccC
Confidence 8776553 111 11 11222 49999999876
No 38
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=95.85 E-value=0.024 Score=55.80 Aligned_cols=97 Identities=13% Similarity=0.162 Sum_probs=65.8
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCccc-cc-CCCcEEEEcCCCCCcEEeee-cCcEEEEccCCCHHHHH
Q 015624 153 IIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHT-LS-PNGGVCIDLSLMKSVKALHI-EDMDVVVEPGIGWMELN 229 (403)
Q Consensus 153 ~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~-~~-~~~gvvIdl~~mn~i~~id~-~~~~v~VeaGv~~~~L~ 229 (403)
-++.|+|.+|..++++- +. ...+.+|||.+.-.- .. .....+||+++++.+..|.. +++.+++++++++.++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~ 81 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQII 81 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHh
Confidence 57899999998888763 32 357899999873111 11 12368899998776666663 45679999999999998
Q ss_pred H--HHhcCCCeecC---------CCCc--ccccccccccc
Q 015624 230 E--YLEPYGLFFPL---------DPGP--GATIGGMCATR 256 (403)
Q Consensus 230 ~--~l~~~Gl~~p~---------~~~~--~~TvGG~ia~n 256 (403)
+ .+.++ +|. ++.. .+|+||++++.
T Consensus 82 ~~~~i~~~---~p~L~~a~~~ia~~qIRN~aTiGGNi~~a 118 (291)
T PRK09971 82 EDPIIQKH---LPALAEAAVSIGGPQIRNVATIGGNICNG 118 (291)
T ss_pred cChHHHHH---hHHHHHHHHHhCCHHHhcceecccccccC
Confidence 6 22211 121 1111 49999999875
No 39
>PLN02906 xanthine dehydrogenase
Probab=94.58 E-value=0.048 Score=64.12 Aligned_cols=102 Identities=15% Similarity=0.084 Sum_probs=71.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCccc-c-cCCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHH
Q 015624 152 DIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHT-L-SPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELN 229 (403)
Q Consensus 152 ~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~-~-~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~ 229 (403)
.-+++|+|.+|+.++++-. . .-.+.+|||.+.-.. . -.+..++||++++..+..|..++..+++++++++.+|.
T Consensus 229 ~~~~~P~tl~ea~~ll~~~---~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAEY---P-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred ceEECcCCHHHHHHHHHhC---C-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 4688999999999876642 2 246789999983211 0 11237899999887777777778889999999999999
Q ss_pred HHHhcCCC--------eecC---------CCCc--cccccccccccc
Q 015624 230 EYLEPYGL--------FFPL---------DPGP--GATIGGMCATRC 257 (403)
Q Consensus 230 ~~l~~~Gl--------~~p~---------~~~~--~~TvGG~ia~n~ 257 (403)
+.|.+.=. .+|. .+.+ .+||||+|++..
T Consensus 305 ~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~as 351 (1319)
T PLN02906 305 NLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTAS 351 (1319)
T ss_pred HHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccCC
Confidence 87554310 1221 1112 499999998763
No 40
>PLN00192 aldehyde oxidase
Probab=94.27 E-value=0.077 Score=62.50 Aligned_cols=106 Identities=13% Similarity=0.057 Sum_probs=72.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHHH
Q 015624 151 PDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNE 230 (403)
Q Consensus 151 P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~~ 230 (403)
..-+++|.|.+|+.++++.....+-...+..|||.+.-.-....-.++||++++..+..+..+++.+++++++++.++.+
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~~ 312 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKDEELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAIE 312 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeeccCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHHH
Confidence 45688999999998887642100123567889998732111112268999998877777777788999999999999998
Q ss_pred HHhcCCC---eecC---------CCCc--ccccccccccc
Q 015624 231 YLEPYGL---FFPL---------DPGP--GATIGGMCATR 256 (403)
Q Consensus 231 ~l~~~Gl---~~p~---------~~~~--~~TvGG~ia~n 256 (403)
.+...-. .+|. .+.+ .+||||+|++.
T Consensus 313 ~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~A 352 (1344)
T PLN00192 313 ALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMA 352 (1344)
T ss_pred HHHhhccccchHHHHHHHHHHhcChhhccceechhhhccc
Confidence 8765421 1221 1111 49999999876
No 41
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=93.81 E-value=0.11 Score=61.08 Aligned_cols=102 Identities=13% Similarity=0.092 Sum_probs=71.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCccc-c-cCCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHH
Q 015624 152 DIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHT-L-SPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELN 229 (403)
Q Consensus 152 ~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~-~-~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~ 229 (403)
..++.|+|.+|+.++++. +. .-.+.+|||.+.-.- . ..+...+||++++..+..+..+++.+++++++++.++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 468899999999988764 22 356789999983111 0 11235899999888777777778889999999999999
Q ss_pred HHHhcC----C----CeecCC---------CCc--cccccccccccc
Q 015624 230 EYLEPY----G----LFFPLD---------PGP--GATIGGMCATRC 257 (403)
Q Consensus 230 ~~l~~~----G----l~~p~~---------~~~--~~TvGG~ia~n~ 257 (403)
+.|.+. . -.+|.. +.+ .+||||++++..
T Consensus 313 ~~l~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~as 359 (1330)
T TIGR02969 313 DILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISRH 359 (1330)
T ss_pred HHHHHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccCC
Confidence 876533 0 012221 112 499999998764
No 42
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=93.34 E-value=0.19 Score=50.22 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=66.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCccccc--CCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHH
Q 015624 152 DIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLS--PNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELN 229 (403)
Q Consensus 152 ~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~--~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~ 229 (403)
--+++|+|.+|..++++- ++ .-.+.+|||.+.-.... .....+||++++..+..|+.+++.+++++++++.+|.
T Consensus 5 f~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~ 80 (321)
T TIGR03195 5 FRTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALA 80 (321)
T ss_pred ceEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHh
Confidence 357899999998887763 32 34679999986211110 1226889999877666666677889999999999996
Q ss_pred HHHhcCCCeecC---------CCCc--ccccccccccc
Q 015624 230 EYLEPYGLFFPL---------DPGP--GATIGGMCATR 256 (403)
Q Consensus 230 ~~l~~~Gl~~p~---------~~~~--~~TvGG~ia~n 256 (403)
+.-.-.. .+|. ++.. -+|+||++++.
T Consensus 81 ~~~~i~~-~~p~L~~a~~~ias~qIRN~aTiGGNi~~~ 117 (321)
T TIGR03195 81 EDALVRT-RWPALAQAARAVAGPTHRAAATLGGNLCLD 117 (321)
T ss_pred hChhhHh-HhHHHHHHHHHhCCHHHhCceecHHhhhcc
Confidence 5311000 1221 1112 49999999964
No 43
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=92.38 E-value=0.22 Score=48.23 Aligned_cols=95 Identities=21% Similarity=0.191 Sum_probs=64.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCccccc---CCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHHHHHh
Q 015624 157 PRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLS---PNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLE 233 (403)
Q Consensus 157 P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~---~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~~~l~ 233 (403)
|+|.+|+.++++- +. ...+.+|||.+.-.-.. .....+||++++..+..++.+++.+++++++++.++.+.=.
T Consensus 1 P~sl~ea~~ll~~---~~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~~ 76 (264)
T TIGR03199 1 PAALDEAWSLLEK---AP-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNPL 76 (264)
T ss_pred CCCHHHHHHHHHh---CC-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhChH
Confidence 7889998887764 22 35789999987322111 11368899999888777887888999999999999974210
Q ss_pred cCCCeecC---------CCCc--ccccccccccc
Q 015624 234 PYGLFFPL---------DPGP--GATIGGMCATR 256 (403)
Q Consensus 234 ~~Gl~~p~---------~~~~--~~TvGG~ia~n 256 (403)
-.-.+|. ++.. .+|+||++++.
T Consensus 77 -i~~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 77 -IKRALPCFVDAASAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred -hHhHhHHHHHHHHHhcCHHHhcceecHHhccCc
Confidence 0001221 1111 49999999765
No 44
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=91.86 E-value=0.23 Score=50.08 Aligned_cols=126 Identities=13% Similarity=0.147 Sum_probs=80.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccC---CCcEEEEcCCCCCcEEeeecCcEEEEccCCCH
Q 015624 149 NIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSP---NGGVCIDLSLMKSVKALHIEDMDVVVEPGIGW 225 (403)
Q Consensus 149 ~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~---~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~ 225 (403)
.-.+.++.|.+.+|+.+++.. +=..++..|+|.+.=. +.. +-..+|-..++..+..|+...+.+++++|+++
T Consensus 201 ~~~~r~~~P~~l~D~a~l~aa----~P~AtivAGsTDvgLw-Vtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~ 275 (493)
T COG4630 201 SGDDRFIVPATLADFADLLAA----HPGATIVAGSTDVGLW-VTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTY 275 (493)
T ss_pred CCCceeEeeccHHHHHHHHhh----CCCCEEEecCcchhhH-HHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccH
Confidence 445778999999999988754 2245677788876311 111 12455656677777777788899999999999
Q ss_pred HHHHHHHhcCCCe----ecCCCC----ccccccccccccccCCCcccccc--ccceEEEEEEEeCCCeEE
Q 015624 226 MELNEYLEPYGLF----FPLDPG----PGATIGGMCATRCSGSLAVRYGT--MRDNVINLKVVLANGDVV 285 (403)
Q Consensus 226 ~~L~~~l~~~Gl~----~p~~~~----~~~TvGG~ia~n~~G~~s~~yG~--~~D~V~~levV~~dG~iv 285 (403)
.+.+++|.++=-. ++--.+ ..+|+||+|++++- -|. ..=..++.++++-.|+-.
T Consensus 276 t~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSP------IGDtPPaLIALgA~ltLr~g~~~ 339 (493)
T COG4630 276 TQAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSP------IGDTPPALIALGATLTLRSGDGR 339 (493)
T ss_pred HHHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCc------CCCCCchhhhcCcEEEEEecCCc
Confidence 9999999864111 110011 14999999988731 121 111346677777655433
No 45
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=90.16 E-value=0.71 Score=45.34 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=64.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccc--cCCCcEEEEcCCCCCcEE-eeecCcEEEEccCCCHHH
Q 015624 151 PDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL--SPNGGVCIDLSLMKSVKA-LHIEDMDVVVEPGIGWME 227 (403)
Q Consensus 151 P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~--~~~~gvvIdl~~mn~i~~-id~~~~~v~VeaGv~~~~ 227 (403)
+-.+++|.|.+|...+++ +++ --.+.+|||++.-.-- ......+||++++..... ...+++.+++++-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 456789999999777665 444 5678999999831110 012356789888753222 334567799999999999
Q ss_pred HHHHHhcCCCeec---------CCCCc--cccccccccccc
Q 015624 228 LNEYLEPYGLFFP---------LDPGP--GATIGGMCATRC 257 (403)
Q Consensus 228 L~~~l~~~Gl~~p---------~~~~~--~~TvGG~ia~n~ 257 (403)
+.+--..+.. +| .++.. .+||||+++.+.
T Consensus 79 i~~~~~~~~~-~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~ 118 (284)
T COG1319 79 IARHPAVRRI-PPALSEAASAIASPQVRNRATIGGNLCNAD 118 (284)
T ss_pred HHhChhhhhh-chHHHHHHHHhcChhhcceeeecchhccCC
Confidence 9643211111 11 12222 499999987763
No 46
>PF09330 Lact-deh-memb: D-lactate dehydrogenase, membrane binding; InterPro: IPR015409 Members of this entry are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices. They allow for membrane association []. ; GO: 0050660 flavin adenine dinucleotide binding, 0055085 transmembrane transport; PDB: 1F0X_A.
Probab=86.63 E-value=1.1 Score=43.52 Aligned_cols=68 Identities=15% Similarity=0.055 Sum_probs=30.3
Q ss_pred EEEEeCCCHHHHHHHHHHHHHc-CCCceEEEecCHHHHHHHHHhhCCCCCCCCceEEEEcCChhhHhhhhcccC
Q 015624 330 VATCNFPTIKDAADVAIATMLS-GIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTREMISLFAFNTF 402 (403)
Q Consensus 330 ~~~~~f~~~~~a~~~~~~i~~~-~~~~~~~e~~D~~~~~~~~~~~~~~~p~~~~l~~e~~g~~~~~~~~~~~~~ 402 (403)
++++..++.++..+.-+.++.+ ...|.+.|||.+..+++.+++.+.. .++|+.-|++..+.+|+++.+
T Consensus 1 VFYIGTNd~~~L~~lRR~iL~~f~~LPisgEYmHRdafdia~~YGKDt-----fl~I~~lGt~~lP~lFa~K~~ 69 (291)
T PF09330_consen 1 VFYIGTNDPAVLTDLRRHILSNFKNLPISGEYMHRDAFDIAEKYGKDT-----FLMIKKLGTDRLPRLFALKAR 69 (291)
T ss_dssp EEEEEES-HHHHHHHHHHHHHH-SS--SEEEEEEHHHHHHH---------------------------------
T ss_pred CeEeccCCHHHHHHHHHHHHhCCccCChhhhhhhhHHHHHHHHhcchH-----HHHHHHhCchhHHHHHHHHHH
Confidence 3677889999988888777643 4568999999999999988877654 788999999999999999864
No 47
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=57.52 E-value=1e+02 Score=31.34 Aligned_cols=171 Identities=11% Similarity=0.085 Sum_probs=85.7
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCCeeee----CCCCCCCcccccCCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHH
Q 015624 153 IIVFPRSEDEVSKIVKCCDKHKVPIIPY----GGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMEL 228 (403)
Q Consensus 153 ~Vv~P~s~eeV~~iv~~a~~~~~pv~~~----GgG~s~~g~~~~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L 228 (403)
.|+.|.+.+|+..+++++.+++-|+.+| ..+....-.....+..-.+. +.+...+.+.+....+.-|....+.
T Consensus 167 ~V~~Pad~~e~~~~l~~a~~~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~---~Gk~~v~r~G~dvtIia~G~~v~~A 243 (356)
T PLN02683 167 KVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLP---IGKAKIEREGKDVTIVAFSKMVGYA 243 (356)
T ss_pred EEEEeCCHHHHHHHHHHHHhCCCcEEEEEehhhccCCCCCCCCCCCcccccc---CCeeEEEEcCCCEEEEEccHHHHHH
Confidence 5888999999999999999888899997 33322110000000001111 1222123334455667778777666
Q ss_pred H---HHHhcCCCeecC-CC-Cc----cccccccccccccCCCccccccccceEEEEEEEeCCCeEEEccccccccccccc
Q 015624 229 N---EYLEPYGLFFPL-DP-GP----GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYD 299 (403)
Q Consensus 229 ~---~~l~~~Gl~~p~-~~-~~----~~TvGG~ia~n~~G~~s~~yG~~~D~V~~levV~~dG~iv~~~~~~~~~~~g~d 299 (403)
. +.|+++|+...+ +. .. .-++--.+ .+ .|.+++..........|-.
T Consensus 244 l~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~---------~~----------------t~~vvtvEE~~~~GGlGs~ 298 (356)
T PLN02683 244 LKAAEILAKEGISAEVINLRSIRPLDRDTINASV---------RK----------------TNRLVTVEEGWPQHGVGAE 298 (356)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHH---------hh----------------cCeEEEEeCCCcCCCHHHH
Confidence 5 445667765332 11 00 01111111 01 1222222211111111222
Q ss_pred chhhhhccCC--cee-EEEEEEEEeEecCCccEEEEEeCCCHHHHHHHHHHHHHcC
Q 015624 300 LTRLIIGSEG--TLG-IITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSG 352 (403)
Q Consensus 300 L~~~~~Gs~G--tlG-IIT~~tLkl~p~p~~~~~~~~~f~~~~~a~~~~~~i~~~~ 352 (403)
+...+... + .++ -|.++.++=.|.|.........+++.++..+++.+++.+.
T Consensus 299 Va~~l~e~-~f~~~~~~v~rlg~~d~~~p~~~~le~~~~p~~~~i~~a~~~~~~~~ 353 (356)
T PLN02683 299 ICASVVEE-SFDYLDAPVERIAGADVPMPYAANLERLALPQVEDIVRAAKRACYRS 353 (356)
T ss_pred HHHHHHHh-chhccCCCeEEeccCCcCCCccHHHHHhhCCCHHHHHHHHHHHHHhh
Confidence 22222211 1 011 4667777666777665556667889999888888877554
No 48
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=35.85 E-value=47 Score=35.62 Aligned_cols=31 Identities=16% Similarity=0.444 Sum_probs=27.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhC-CCCeee
Q 015624 149 NIPDIIVFPRSEDEVSKIVKCCDKH-KVPIIP 179 (403)
Q Consensus 149 ~~P~~Vv~P~s~eeV~~iv~~a~~~-~~pv~~ 179 (403)
+.|-.++.|.+.|+|..++++|+++ ..|++.
T Consensus 150 G~~yv~fKPGtIeqI~svi~IAka~P~~pIil 181 (717)
T COG4981 150 GFPYVAFKPGTIEQIRSVIRIAKANPTFPIIL 181 (717)
T ss_pred CceeEEecCCcHHHHHHHHHHHhcCCCCceEE
Confidence 6788899999999999999999998 567776
No 49
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=34.02 E-value=57 Score=28.65 Aligned_cols=28 Identities=11% Similarity=0.193 Sum_probs=25.3
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCCeeee
Q 015624 153 IIVFPRSEDEVSKIVKCCDKHKVPIIPY 180 (403)
Q Consensus 153 ~Vv~P~s~eeV~~iv~~a~~~~~pv~~~ 180 (403)
.|+.|.+.+|+..+++.|-+.+-|+.+|
T Consensus 126 ~v~~Ps~~~~~~~ll~~a~~~~~P~~ir 153 (156)
T cd07033 126 TVLRPADANETAAALEAALEYDGPVYIR 153 (156)
T ss_pred EEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 5888999999999999999888888876
No 50
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=31.59 E-value=91 Score=36.39 Aligned_cols=101 Identities=24% Similarity=0.212 Sum_probs=65.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHHHH
Q 015624 152 DIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEY 231 (403)
Q Consensus 152 ~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~~~ 231 (403)
.....|.|.+|+.++.+ +........|.|...-.--..+....||.++...+..++.++..+++++++++.++.+.
T Consensus 215 ~~W~~P~sl~eL~~~~~----~~~~~~Lv~GNT~~gv~~r~~~~~~~Id~~~v~el~~~~~~~~gi~lGa~~sls~~~~~ 290 (1257)
T KOG0430|consen 215 IRWYWPVSLEELFELKA----NKPDAKLVAGNTAHGVYRRSPDYQKFIDVSGVPELKALNVDDNGLELGAALSLSETMEL 290 (1257)
T ss_pred cEEeCcccHHHHHHHHh----cCcceEEEeccccceEEeccCCCcceechhcCchhhhcccCCCceEEcccccHHHHHHH
Confidence 34568999999999887 44445555565554211122233566888776655445556777999999999999888
Q ss_pred HhcCCCeec-------------C--CCC--ccccccccccccc
Q 015624 232 LEPYGLFFP-------------L--DPG--PGATIGGMCATRC 257 (403)
Q Consensus 232 l~~~Gl~~p-------------~--~~~--~~~TvGG~ia~n~ 257 (403)
+.+.-- .| . ... ..+|+||+|.+..
T Consensus 291 l~~~~~-~~~~~~~~~~~~hl~~~A~~~IRN~atigGnI~~~~ 332 (1257)
T KOG0430|consen 291 LRKLVK-RPGFEYFKALWEHLKWFANVQIRNVGTIGGNICTKA 332 (1257)
T ss_pred HHHHHh-CcHHHHHHHHHHHHHHhcccceeccccccceeEecc
Confidence 865321 11 0 111 1489999997764
No 51
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=31.45 E-value=73 Score=26.88 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=28.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhCCCCeee
Q 015624 148 VNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIP 179 (403)
Q Consensus 148 ~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~ 179 (403)
.+.+..|+...|++|+.++.+.|++.+++...
T Consensus 45 ~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~ 76 (113)
T PRK04322 45 EGQKKVVLKVNSEEELLELKEKAERLGLPTAL 76 (113)
T ss_pred CCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEE
Confidence 46889999999999999999999999988543
No 52
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=26.05 E-value=82 Score=28.26 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=27.0
Q ss_pred CCc-EEEEcCCHHHHHHHHHHHHh--CCCCeeeeCCC
Q 015624 150 IPD-IIVFPRSEDEVSKIVKCCDK--HKVPIIPYGGA 183 (403)
Q Consensus 150 ~P~-~Vv~P~s~eeV~~iv~~a~~--~~~pv~~~GgG 183 (403)
.|. .|+.|.+.+|+..+++++-+ .+-|+++|-..
T Consensus 136 iPg~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r 172 (178)
T PF02779_consen 136 IPGMKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPR 172 (178)
T ss_dssp STTEEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEES
T ss_pred ccccccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeH
Confidence 444 58889999999999999999 67888887544
No 53
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=25.89 E-value=1.1e+02 Score=25.78 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=28.1
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHHhCCCCee
Q 015624 147 AVNIPDIIVFPRSEDEVSKIVKCCDKHKVPII 178 (403)
Q Consensus 147 ~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~ 178 (403)
..+.+..|+...+++|+.++.+.|.+.+++..
T Consensus 46 ~~g~~KvVl~v~~~~~l~~l~~~a~~~gl~~~ 77 (115)
T cd02407 46 LEGQKKVVLKVPSEEELLELAKKAKELGLPHS 77 (115)
T ss_pred hCCCcEEEEECCCHHHHHHHHHHHHHcCCCeE
Confidence 34788999999999999999999999888754
No 54
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.26 E-value=1.2e+02 Score=27.86 Aligned_cols=31 Identities=23% Similarity=0.185 Sum_probs=28.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhCCCCeee
Q 015624 149 NIPDIIVFPRSEDEVSKIVKCCDKHKVPIIP 179 (403)
Q Consensus 149 ~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~ 179 (403)
+.|..||..++++++.++.+.|+..+++...
T Consensus 123 GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~ 153 (190)
T KOG3282|consen 123 GQAKIVVKAESEEELMELQKDAKKLGLYTHL 153 (190)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHcCCcEEE
Confidence 7899999999999999999999999987654
No 55
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=24.40 E-value=1.7e+02 Score=20.75 Aligned_cols=46 Identities=15% Similarity=0.173 Sum_probs=30.8
Q ss_pred cchhhhhccCCceeEEEEEEEEeEecCCccEEEEEeCCCHHHHHHHHHHH
Q 015624 299 DLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIAT 348 (403)
Q Consensus 299 dL~~~~~Gs~GtlGIIT~~tLkl~p~p~~~~~~~~~f~~~~~a~~~~~~i 348 (403)
+|..+|. .+|.|..+.+...+........++.|.+.+++..++..+
T Consensus 14 ~l~~~f~----~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l 59 (70)
T PF00076_consen 14 ELRDFFS----QFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEEL 59 (70)
T ss_dssp HHHHHHH----TTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----HhhhcccccccccccccccceEEEEEcCHHHHHHHHHHc
Confidence 4555543 256776666665534455567889999999998887653
No 56
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=23.49 E-value=1.5e+02 Score=24.69 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=29.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhCCCCeee-eCCC
Q 015624 148 VNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIP-YGGA 183 (403)
Q Consensus 148 ~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~-~GgG 183 (403)
.+.+..|+...|++|+.++.+.|.+.++|..+ +-.|
T Consensus 48 ~g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i~Dag 84 (116)
T PF01981_consen 48 NGQKKIVLKVPSEEELLELAKKAKEAGLPHYLIRDAG 84 (116)
T ss_dssp TTTSEEEEEESSHHHHHHHHHHHHHTT-SEEEEEETS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 36788999999999999999999999998653 3444
No 57
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=22.87 E-value=4.1e+02 Score=25.96 Aligned_cols=114 Identities=10% Similarity=0.000 Sum_probs=67.8
Q ss_pred CCCCCCcHHHHHHHHH-hcCC-CeeeChhhhhhccCCCCCcCcCCCCCcEEEEcCCHHHHHHHHHHHHhCCCCeeeeCCC
Q 015624 106 GSHKEIPQELVDELKA-ICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGA 183 (403)
Q Consensus 106 ~~~~~~~~~~~~~L~~-~lg~-~v~~~~~~~~~~~~~~~s~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~GgG 183 (403)
+-..-+.++.++.|++ +++. .+++++-..... ..+. ...++.+|++++.+...+.|.+-++.=||
T Consensus 112 sG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~---------L~g~----~~i~~~~d~~~a~~~i~~~g~~~VliKGG 178 (263)
T COG0351 112 SGDPLLDEEAVEALREELLPLATVVTPNLPEAEA---------LSGL----PKIKTEEDMKEAAKLLHELGAKAVLIKGG 178 (263)
T ss_pred CCCcccChHHHHHHHHHhhccCeEecCCHHHHHH---------HcCC----CccCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 3344556778888874 4553 566654332210 0011 26789999999999999999998888888
Q ss_pred CCCCcccccCCCcEEEEcCCCCCc--EEeeecCcEEEEccCCCHHHHHHHHhcCCCeec
Q 015624 184 TSIEGHTLSPNGGVCIDLSLMKSV--KALHIEDMDVVVEPGIGWMELNEYLEPYGLFFP 240 (403)
Q Consensus 184 ~s~~g~~~~~~~gvvIdl~~mn~i--~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~p 240 (403)
|... . ...++.|-..+..+ -.++.. =+=+.|+++......-..+|+.+.
T Consensus 179 H~~~---~--~~D~l~~~~~~~~f~~~ri~t~---~tHGTGCTlSaAIaa~LA~G~~l~ 229 (263)
T COG0351 179 HLEG---E--AVDVLYDGGSFYTFEAPRIPTK---NTHGTGCTLSAAIAANLAKGLSLE 229 (263)
T ss_pred CCCC---C--ceeEEEcCCceEEEeccccCCC---CCCCccHHHHHHHHHHHHcCCCHH
Confidence 8763 1 12344432211000 001111 135799999988877777787654
No 58
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=21.60 E-value=1.9e+02 Score=24.52 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=28.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhCCCCeee
Q 015624 148 VNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIP 179 (403)
Q Consensus 148 ~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~ 179 (403)
.+.+..++...+++|+.++.+.|.+.+++..+
T Consensus 47 ~G~~KVvlk~~~~~el~~l~~~a~~~~l~~~~ 78 (115)
T TIGR00283 47 EGQKKVVLKVNSLEELLEIYHKAESLGLVTGL 78 (115)
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCEEE
Confidence 36788999999999999999999999998653
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=21.45 E-value=2.1e+02 Score=20.64 Aligned_cols=45 Identities=24% Similarity=0.220 Sum_probs=31.6
Q ss_pred cchhhhhccCCceeEEEEEEEEeEecCCccEEEEEeCCCHHHHHHHHHH
Q 015624 299 DLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIA 347 (403)
Q Consensus 299 dL~~~~~Gs~GtlGIIT~~tLkl~p~p~~~~~~~~~f~~~~~a~~~~~~ 347 (403)
||..++.. +|.|.++.+...+.......+++.|.+.++|..++..
T Consensus 14 ~l~~~f~~----~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~ 58 (70)
T PF14259_consen 14 DLRNFFSR----FGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALEL 58 (70)
T ss_dssp HHHHHCTT----SSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHh----cCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHH
Confidence 45555432 4668888887765444456789999999999888755
No 60
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=21.34 E-value=92 Score=28.98 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCCCeeeeCCCCCC
Q 015624 163 VSKIVKCCDKHKVPIIPYGGATSI 186 (403)
Q Consensus 163 V~~iv~~a~~~~~pv~~~GgG~s~ 186 (403)
+.+.+++++++++|+++.++|.+.
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~ 101 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDP 101 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCch
Confidence 456788999999999999999886
No 61
>PF07317 YcgR: Flagellar regulator YcgR; InterPro: IPR009926 This entry represents the N-terminal domain of YcgR proteins. The function of this domain is not known, but it is known to interact with the C-terminal which has cyclic-di-GMP bound []. YcgR is involved in the flagellar motor function and is a member of the flagellar regulon [, ].; PDB: 2GJG_A 3KYF_A.
Probab=21.30 E-value=2e+02 Score=23.67 Aligned_cols=67 Identities=19% Similarity=0.224 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCeeeeCCCCCCCcccccCCCcEEEEcCCCCCcEEeeecCcEEEEccCCCHHHHHHHHhcCC
Q 015624 157 PRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYG 236 (403)
Q Consensus 157 P~s~eeV~~iv~~a~~~~~pv~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~id~~~~~v~VeaGv~~~~L~~~l~~~G 236 (403)
-++..||..+++...+++.|+.++-+ .+- . .+ .+|+++|++++++..-.|..-.+-...+...-
T Consensus 4 ~~~p~eI~~~Lr~L~~~~~~l~v~~~-~g~---------~-f~-----T~iL~VD~~~~~l~lD~~~~~~~n~~~l~a~~ 67 (108)
T PF07317_consen 4 LRNPREILAVLRDLAKQRSPLTVRHP-RGQ---------S-FI-----TSILAVDPDRGTLVLDEGSDEEENQRLLNAEE 67 (108)
T ss_dssp E-SHHHHHHHHHHHHHTT--EEEETT--SS---------E-EE-----E-EEEEETTTTEEEEE--BSGGGHHHHHTT--
T ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeC-CCC---------E-EE-----EEEEEEeCCCCEEEEEcCCChHHHHHHhcCCc
Confidence 46788999999999999999999833 111 1 22 25678899998888877776666555555444
Q ss_pred Cee
Q 015624 237 LFF 239 (403)
Q Consensus 237 l~~ 239 (403)
+.+
T Consensus 68 ~~~ 70 (108)
T PF07317_consen 68 LTF 70 (108)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 62
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=21.05 E-value=77 Score=31.71 Aligned_cols=22 Identities=14% Similarity=0.478 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHhCCCCeeee
Q 015624 159 SEDEVSKIVKCCDKHKVPIIPY 180 (403)
Q Consensus 159 s~eeV~~iv~~a~~~~~pv~~~ 180 (403)
|.+|+++++++|+++++.|+|-
T Consensus 73 T~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 73 TQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred CHHHHHHHHHHHHHcCCEEEEe
Confidence 7899999999999999999983
No 63
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=20.83 E-value=80 Score=31.09 Aligned_cols=23 Identities=13% Similarity=0.328 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHhCCCCeeee
Q 015624 158 RSEDEVSKIVKCCDKHKVPIIPY 180 (403)
Q Consensus 158 ~s~eeV~~iv~~a~~~~~pv~~~ 180 (403)
=|.+|+++++++|+++|+.|+|-
T Consensus 69 yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 69 YTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred ECHHHHHHHHHHHHHcCCEEEEe
Confidence 46799999999999999999983
No 64
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=20.53 E-value=1.4e+02 Score=26.76 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=25.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCCeeee
Q 015624 152 DIIVFPRSEDEVSKIVKCCDKHKVPIIPY 180 (403)
Q Consensus 152 ~~Vv~P~s~eeV~~iv~~a~~~~~pv~~~ 180 (403)
..|+.|.+.+|...+++.+.+++-|++++
T Consensus 136 ~~V~~Psd~~e~~~~l~~~~~~~~P~~~~ 164 (167)
T cd07036 136 LKVVAPSTPYDAKGLLKAAIRDDDPVIFL 164 (167)
T ss_pred CEEEeeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 46888999999999999999988787764
No 65
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=20.29 E-value=2.1e+02 Score=24.35 Aligned_cols=32 Identities=6% Similarity=0.072 Sum_probs=28.9
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhCCCCeee
Q 015624 148 VNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIP 179 (403)
Q Consensus 148 ~~~P~~Vv~P~s~eeV~~iv~~a~~~~~pv~~ 179 (403)
.+.+..|+...+++|+.++-+.+++.+++..+
T Consensus 53 ~g~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l 84 (116)
T cd02429 53 DNMHKVVLEVPDEAALKNLSSKLTENSIKHKL 84 (116)
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCCeEE
Confidence 35789999999999999999999999998766
Done!