BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015627
         (403 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1CF7|A Chain A, Structural Basis Of Dna Recognition By The Heterodimeric
           Cell Cycle Transcription Factor E2f-Dp
          Length = 76

 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 49/73 (67%), Positives = 60/73 (82%), Gaps = 1/73 (1%)

Query: 73  PAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEV-QKRRIYDITNVLEGIGLI 131
           P    R++ SLGLLT KF++L++ A+DG+LDL  AA+TL V QKRRIYDITNVLEGIGLI
Sbjct: 2   PGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLI 61

Query: 132 EKKLKNRIRWKGL 144
           EKK KN I+WKG+
Sbjct: 62  EKKSKNSIQWKGV 74


>pdb|2AZE|B Chain B, Structure Of The Rb C-Terminal Domain Bound To An E2f1-Dp1
           Heterodimer
          Length = 106

 Score = 37.7 bits (86), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 7/64 (10%)

Query: 195 KWLFVTEEDIKNLHCFQNQTLIAIKAPQGTTLEVPDPDEAVDYPQRRYRIILRSTMGPID 254
           +  +VT +D++++     Q ++ IKAP  T L+  D  E        ++I L+S  GPID
Sbjct: 47  RLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDSSE-------NFQISLKSKQGPID 99

Query: 255 VYLV 258
           V+L 
Sbjct: 100 VFLC 103


>pdb|1CF7|B Chain B, Structural Basis Of Dna Recognition By The Heterodimeric
           Cell Cycle Transcription Factor E2f-Dp
          Length = 95

 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 115 KRRIYDITNVLEGIGLIEKKLKNRIRWKGL 144
           +RR+YD  NVL  + +I K+ K  I+W GL
Sbjct: 61  RRRVYDALNVLMAMNIISKE-KKEIKWIGL 89


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.131    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,631,505
Number of Sequences: 62578
Number of extensions: 470672
Number of successful extensions: 845
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 841
Number of HSP's gapped (non-prelim): 8
length of query: 403
length of database: 14,973,337
effective HSP length: 101
effective length of query: 302
effective length of database: 8,652,959
effective search space: 2613193618
effective search space used: 2613193618
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)