Query 015627
Match_columns 403
No_of_seqs 214 out of 459
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 15:54:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aze_B Transcription factor E2 100.0 1.5E-37 5.1E-42 263.2 10.1 102 152-260 4-105 (106)
2 1cf7_A Protein (transcription 100.0 1.3E-29 4.4E-34 203.4 5.6 74 72-145 1-75 (76)
3 1cf7_B Protein (transcription 99.3 7.3E-13 2.5E-17 110.6 3.7 67 78-147 7-92 (95)
4 1oyi_A Double-stranded RNA-bin 92.7 0.1 3.6E-06 42.2 4.1 61 80-143 12-72 (82)
5 2xvc_A ESCRT-III, SSO0910; cel 92.5 0.088 3E-06 40.6 3.2 44 88-132 13-56 (59)
6 1qgp_A Protein (double strande 92.4 0.094 3.2E-06 41.1 3.4 55 88-142 17-72 (77)
7 1qbj_A Protein (double-strande 91.8 0.14 4.7E-06 40.8 3.8 56 87-142 12-68 (81)
8 2heo_A Z-DNA binding protein 1 91.6 0.15 5.1E-06 38.6 3.6 53 86-139 11-63 (67)
9 1r7j_A Conserved hypothetical 90.5 0.49 1.7E-05 38.2 5.9 46 85-134 8-53 (95)
10 2oqg_A Possible transcriptiona 89.9 1.5 5.2E-05 34.5 8.3 47 89-138 25-71 (114)
11 3r0a_A Putative transcriptiona 89.0 0.49 1.7E-05 39.2 5.0 47 88-134 29-75 (123)
12 2htj_A P fimbrial regulatory p 88.0 0.44 1.5E-05 36.4 3.7 44 88-133 3-46 (81)
13 3jw4_A Transcriptional regulat 87.9 2 6.7E-05 35.1 7.9 46 90-135 46-91 (148)
14 3deu_A Transcriptional regulat 87.8 1.9 6.4E-05 36.6 7.9 37 99-135 66-102 (166)
15 3eco_A MEPR; mutlidrug efflux 86.8 1.4 4.9E-05 35.3 6.4 46 89-134 35-80 (139)
16 1y0u_A Arsenical resistance op 83.8 0.7 2.4E-05 36.1 3.0 48 89-141 35-82 (96)
17 1ku9_A Hypothetical protein MJ 83.4 3.9 0.00013 32.6 7.5 45 89-134 30-74 (152)
18 2kko_A Possible transcriptiona 83.4 0.71 2.4E-05 37.2 3.0 46 90-138 30-75 (108)
19 2gxg_A 146AA long hypothetical 83.3 1.7 5.9E-05 35.0 5.3 36 99-134 48-83 (146)
20 3cuo_A Uncharacterized HTH-typ 82.4 0.89 3E-05 34.8 3.1 46 90-137 29-74 (99)
21 2a61_A Transcriptional regulat 82.4 1.8 6.3E-05 34.8 5.1 44 90-135 38-81 (145)
22 2y75_A HTH-type transcriptiona 81.9 1.3 4.6E-05 36.3 4.2 46 89-134 13-59 (129)
23 1sfx_A Conserved hypothetical 81.8 0.82 2.8E-05 34.9 2.7 45 89-135 24-68 (109)
24 2d1h_A ST1889, 109AA long hypo 81.5 0.71 2.4E-05 35.4 2.2 38 99-136 34-71 (109)
25 3bro_A Transcriptional regulat 81.5 1 3.5E-05 36.2 3.2 47 89-135 38-84 (141)
26 1on2_A Transcriptional regulat 81.4 1.2 4.1E-05 36.6 3.7 37 100-136 21-57 (142)
27 2fu4_A Ferric uptake regulatio 81.3 0.82 2.8E-05 34.7 2.5 47 89-135 21-72 (83)
28 3qph_A TRMB, A global transcri 80.8 0.35 1.2E-05 47.3 0.3 51 90-143 24-74 (342)
29 1sfu_A 34L protein; protein/Z- 80.0 0.98 3.4E-05 36.2 2.6 61 80-142 10-70 (75)
30 2hr3_A Probable transcriptiona 79.2 2.3 7.9E-05 34.4 4.7 44 90-134 40-83 (147)
31 3nrv_A Putative transcriptiona 78.9 4.9 0.00017 32.5 6.6 43 90-134 45-87 (148)
32 2x4h_A Hypothetical protein SS 78.8 1.6 5.6E-05 35.5 3.7 38 98-135 28-65 (139)
33 1j5y_A Transcriptional regulat 78.5 1.7 6E-05 38.2 4.0 53 88-142 24-77 (187)
34 3rkx_A Biotin-[acetyl-COA-carb 78.2 1.8 6.1E-05 42.0 4.3 57 87-143 5-62 (323)
35 3f6o_A Probable transcriptiona 78.1 2.6 8.8E-05 34.2 4.6 50 89-141 22-71 (118)
36 3u2r_A Regulatory protein MARR 77.9 2.2 7.4E-05 35.8 4.3 46 90-135 51-96 (168)
37 2frh_A SARA, staphylococcal ac 77.1 1.6 5.6E-05 35.5 3.2 45 90-134 42-86 (127)
38 1r1u_A CZRA, repressor protein 75.9 1.5 5.3E-05 34.8 2.7 46 89-137 30-75 (106)
39 3s2w_A Transcriptional regulat 75.9 12 0.00039 30.9 8.1 37 99-135 62-98 (159)
40 3mq0_A Transcriptional repress 75.8 2.6 9E-05 39.4 4.6 50 90-140 35-84 (275)
41 2pg4_A Uncharacterized protein 74.9 2.1 7.3E-05 33.2 3.2 53 80-132 8-62 (95)
42 1lj9_A Transcriptional regulat 74.6 5.9 0.0002 31.8 5.9 35 100-134 42-76 (144)
43 2eth_A Transcriptional regulat 74.3 2.5 8.5E-05 34.8 3.6 35 100-134 57-91 (154)
44 1s3j_A YUSO protein; structura 74.3 2.5 8.7E-05 34.4 3.7 36 100-135 50-85 (155)
45 2bv6_A MGRA, HTH-type transcri 74.0 0.66 2.2E-05 37.5 0.0 37 99-135 49-85 (142)
46 3jth_A Transcription activator 73.7 1.9 6.6E-05 33.4 2.7 38 100-137 35-72 (98)
47 1ub9_A Hypothetical protein PH 73.3 7.8 0.00027 29.3 6.0 44 90-135 21-64 (100)
48 2fbh_A Transcriptional regulat 73.1 7.9 0.00027 30.9 6.3 38 98-135 49-86 (146)
49 3k0l_A Repressor protein; heli 72.7 2.5 8.4E-05 35.2 3.3 37 99-135 58-94 (162)
50 2hzt_A Putative HTH-type trans 72.7 2.4 8.1E-05 33.9 3.0 37 99-135 25-62 (107)
51 2lkp_A Transcriptional regulat 72.4 2.5 8.7E-05 33.8 3.2 36 100-135 44-79 (119)
52 3mkl_A HTH-type transcriptiona 72.3 3.3 0.00011 33.4 3.8 39 86-124 8-46 (120)
53 2p4w_A Transcriptional regulat 72.3 19 0.00065 32.5 9.3 44 89-135 19-62 (202)
54 3bpv_A Transcriptional regulat 72.2 3.5 0.00012 32.8 3.9 43 90-134 34-76 (138)
55 2fsw_A PG_0823 protein; alpha- 72.2 0.71 2.4E-05 37.0 -0.2 57 76-135 12-73 (107)
56 4b8x_A SCO5413, possible MARR- 72.1 1.8 6.1E-05 36.2 2.3 45 91-135 41-85 (147)
57 3bj6_A Transcriptional regulat 72.0 3.1 0.0001 33.8 3.6 36 100-135 53-88 (152)
58 2jt1_A PEFI protein; solution 71.9 2.4 8.1E-05 33.4 2.8 47 88-134 7-57 (77)
59 2f2e_A PA1607; transcription f 71.5 1.3 4.6E-05 37.7 1.4 57 76-135 11-71 (146)
60 3f6v_A Possible transcriptiona 71.0 3.7 0.00013 35.4 4.1 51 89-142 62-112 (151)
61 3oou_A LIN2118 protein; protei 70.6 3.5 0.00012 32.6 3.5 43 86-128 6-48 (108)
62 3gpv_A Transcriptional regulat 70.6 6 0.00021 34.0 5.3 39 101-143 16-56 (148)
63 3pfi_A Holliday junction ATP-d 70.4 2.7 9.1E-05 39.0 3.2 55 83-137 261-316 (338)
64 3tgn_A ADC operon repressor AD 69.7 5.8 0.0002 31.9 4.8 45 88-135 41-85 (146)
65 3g3z_A NMB1585, transcriptiona 69.6 2.6 8.9E-05 34.1 2.7 34 101-134 45-78 (145)
66 1z7u_A Hypothetical protein EF 69.6 19 0.00066 28.7 7.9 36 100-135 34-70 (112)
67 3hsr_A HTH-type transcriptiona 69.6 1.4 4.8E-05 35.9 1.0 38 97-134 46-83 (140)
68 1u2w_A CADC repressor, cadmium 69.5 2.6 8.8E-05 34.6 2.6 46 90-137 47-92 (122)
69 3oio_A Transcriptional regulat 69.4 4.3 0.00015 32.3 3.9 43 85-127 7-49 (113)
70 1i1g_A Transcriptional regulat 69.1 3.4 0.00012 33.9 3.3 45 88-134 7-51 (141)
71 2cfx_A HTH-type transcriptiona 69.1 3 0.0001 34.8 3.0 48 85-134 5-52 (144)
72 1a93_B MAX protein, coiled coi 69.0 6.6 0.00023 27.2 4.1 30 151-180 4-33 (34)
73 3nqo_A MARR-family transcripti 68.9 2.7 9.2E-05 36.5 2.7 45 90-134 46-90 (189)
74 1xn7_A Hypothetical protein YH 68.6 3.5 0.00012 32.5 3.1 45 88-134 5-49 (78)
75 2dbb_A Putative HTH-type trans 68.5 3 0.0001 34.8 2.9 50 83-134 7-56 (151)
76 2xrn_A HTH-type transcriptiona 68.2 3.8 0.00013 37.4 3.7 49 90-139 11-60 (241)
77 1yyv_A Putative transcriptiona 68.1 2 6.7E-05 36.2 1.7 60 76-135 22-83 (131)
78 3oop_A LIN2960 protein; protei 67.8 2.7 9.1E-05 34.0 2.4 44 90-135 42-85 (143)
79 1tbx_A ORF F-93, hypothetical 67.8 3.4 0.00012 32.0 2.9 39 99-137 20-62 (99)
80 3fm5_A Transcriptional regulat 67.7 2.9 9.8E-05 34.2 2.5 36 100-135 53-88 (150)
81 3bdd_A Regulatory protein MARR 67.7 2.1 7E-05 34.2 1.6 36 100-135 44-79 (142)
82 3pqk_A Biofilm growth-associat 67.6 2.6 8.9E-05 33.0 2.2 45 90-137 28-72 (102)
83 2nnn_A Probable transcriptiona 67.2 3.1 0.00011 33.1 2.6 35 100-134 51-85 (140)
84 3e6m_A MARR family transcripti 67.1 4.4 0.00015 33.6 3.6 36 100-135 66-101 (161)
85 3bja_A Transcriptional regulat 67.0 4 0.00014 32.4 3.2 43 90-134 38-80 (139)
86 3mn2_A Probable ARAC family tr 67.0 4.5 0.00015 31.8 3.5 43 86-128 3-45 (108)
87 2fa5_A Transcriptional regulat 67.0 3.5 0.00012 33.9 3.0 37 99-135 61-97 (162)
88 2p5v_A Transcriptional regulat 66.8 3.6 0.00012 35.0 3.0 50 83-134 8-57 (162)
89 2rdp_A Putative transcriptiona 66.6 5 0.00017 32.4 3.8 35 100-134 55-89 (150)
90 1mkm_A ICLR transcriptional re 66.4 4.7 0.00016 36.8 4.0 44 90-134 13-56 (249)
91 2k02_A Ferrous iron transport 66.3 4 0.00014 33.1 3.1 46 88-135 5-50 (87)
92 3ech_A MEXR, multidrug resista 66.2 4.5 0.00015 32.7 3.4 44 90-135 42-85 (142)
93 2fbi_A Probable transcriptiona 66.0 3.1 0.00011 33.2 2.4 36 100-135 49-84 (142)
94 2cg4_A Regulatory protein ASNC 65.4 3.8 0.00013 34.4 2.9 50 83-134 6-55 (152)
95 3cjn_A Transcriptional regulat 65.4 5.2 0.00018 33.0 3.7 36 99-134 64-99 (162)
96 3boq_A Transcriptional regulat 65.3 4.9 0.00017 32.9 3.5 36 99-134 60-95 (160)
97 2jsc_A Transcriptional regulat 65.2 2.6 8.8E-05 34.4 1.8 45 89-136 25-69 (118)
98 1p6r_A Penicillinase repressor 65.0 3.9 0.00013 30.9 2.6 47 87-135 11-61 (82)
99 3kp7_A Transcriptional regulat 64.9 7.8 0.00027 31.6 4.7 37 98-134 48-84 (151)
100 2nyx_A Probable transcriptiona 64.9 4.6 0.00016 34.0 3.3 35 100-134 58-92 (168)
101 2ip2_A Probable phenazine-spec 64.8 3.9 0.00013 37.9 3.2 43 100-142 40-82 (334)
102 3f3x_A Transcriptional regulat 64.8 3.4 0.00012 33.4 2.4 43 90-135 42-84 (144)
103 2qww_A Transcriptional regulat 64.3 4.2 0.00014 33.2 2.9 42 90-133 46-87 (154)
104 2w25_A Probable transcriptiona 63.4 4.7 0.00016 33.7 3.1 50 83-134 5-54 (150)
105 2o0y_A Transcriptional regulat 63.1 5.3 0.00018 36.8 3.7 41 99-139 36-76 (260)
106 2cyy_A Putative HTH-type trans 63.1 4.8 0.00017 33.7 3.1 50 83-134 5-54 (151)
107 3lsg_A Two-component response 63.0 6.4 0.00022 30.7 3.7 43 86-128 3-46 (103)
108 2wte_A CSA3; antiviral protein 62.8 5.6 0.00019 37.1 3.8 50 85-136 152-201 (244)
109 3cdh_A Transcriptional regulat 62.5 3.8 0.00013 33.6 2.3 38 98-135 54-91 (155)
110 2dk5_A DNA-directed RNA polyme 62.3 6.2 0.00021 31.7 3.5 47 88-134 23-69 (91)
111 1r1t_A Transcriptional repress 62.0 4.8 0.00017 33.2 2.9 45 90-137 51-95 (122)
112 4hbl_A Transcriptional regulat 61.9 4.7 0.00016 33.0 2.8 36 99-134 53-88 (149)
113 1bl0_A Protein (multiple antib 61.6 5.3 0.00018 32.7 3.1 43 85-127 11-53 (129)
114 3r4k_A Transcriptional regulat 61.2 3.1 0.0001 38.5 1.7 42 99-140 19-61 (260)
115 2fbk_A Transcriptional regulat 60.9 6.2 0.00021 33.5 3.5 35 101-135 86-120 (181)
116 2h09_A Transcriptional regulat 60.7 9.2 0.00031 31.7 4.4 45 90-136 45-89 (155)
117 4ham_A LMO2241 protein; struct 60.6 26 0.0009 29.0 7.2 50 86-135 19-72 (134)
118 3i53_A O-methyltransferase; CO 60.5 3.8 0.00013 38.2 2.2 51 89-142 29-79 (332)
119 2ia0_A Putative HTH-type trans 60.1 5.7 0.00019 34.6 3.1 50 83-134 15-64 (171)
120 2g7u_A Transcriptional regulat 60.1 4 0.00014 37.5 2.3 41 99-140 27-67 (257)
121 1ylf_A RRF2 family protein; st 59.5 7.5 0.00026 33.0 3.7 45 90-134 19-63 (149)
122 2pn6_A ST1022, 150AA long hypo 59.3 6 0.00021 32.9 3.0 45 88-134 6-50 (150)
123 2k9s_A Arabinose operon regula 59.1 9.2 0.00032 30.0 4.0 41 86-126 4-45 (107)
124 1v4r_A Transcriptional repress 57.9 12 0.00042 29.4 4.5 54 84-137 14-71 (102)
125 2vn2_A DNAD, chromosome replic 57.9 6.1 0.00021 32.9 2.8 36 101-136 51-86 (128)
126 3k69_A Putative transcription 57.8 9.1 0.00031 33.4 4.0 47 88-134 15-61 (162)
127 3hh0_A Transcriptional regulat 56.5 16 0.00054 31.4 5.3 37 101-141 4-42 (146)
128 3lst_A CALO1 methyltransferase 56.5 5 0.00017 37.9 2.3 44 98-142 52-95 (348)
129 2r3s_A Uncharacterized protein 56.2 4.7 0.00016 37.1 2.0 42 99-141 37-78 (335)
130 1fxk_C Protein (prefoldin); ar 56.1 19 0.00066 30.0 5.6 50 138-187 72-128 (133)
131 2pex_A Transcriptional regulat 56.0 3.6 0.00012 33.6 1.1 37 99-135 59-95 (153)
132 4a5n_A Uncharacterized HTH-typ 55.7 7.4 0.00025 33.2 3.1 59 76-135 13-74 (131)
133 3by6_A Predicted transcription 55.1 22 0.00076 29.4 5.9 52 86-137 16-71 (126)
134 1r8e_A Multidrug-efflux transp 55.0 28 0.00095 31.6 7.0 41 100-144 4-47 (278)
135 2e1c_A Putative HTH-type trans 54.9 8.2 0.00028 33.6 3.3 50 83-134 25-74 (171)
136 3gwz_A MMCR; methyltransferase 54.7 5 0.00017 38.3 2.0 44 98-141 68-112 (369)
137 1jgs_A Multiple antibiotic res 53.9 3.6 0.00012 32.8 0.7 35 100-134 47-81 (138)
138 2qlz_A Transcription factor PF 53.7 20 0.00068 33.3 5.8 42 89-133 16-57 (232)
139 1wi9_A Protein C20ORF116 homol 53.1 12 0.00042 29.7 3.6 55 86-142 8-64 (72)
140 4aik_A Transcriptional regulat 52.9 40 0.0014 28.1 7.2 35 101-135 46-80 (151)
141 3ihu_A Transcriptional regulat 51.9 17 0.00057 32.2 4.9 57 80-136 14-74 (222)
142 3df8_A Possible HXLR family tr 51.8 39 0.0013 27.1 6.7 55 79-136 17-78 (111)
143 1qzz_A RDMB, aclacinomycin-10- 51.7 6.4 0.00022 37.0 2.2 49 90-141 41-91 (374)
144 1bia_A BIRA bifunctional prote 51.5 9.2 0.00032 36.6 3.3 53 88-142 8-61 (321)
145 2ia2_A Putative transcriptiona 51.5 11 0.00038 34.7 3.8 44 99-144 34-77 (265)
146 1q1h_A TFE, transcription fact 51.1 8.4 0.00029 30.4 2.5 37 98-134 30-66 (110)
147 1z91_A Organic hydroperoxide r 50.8 3.2 0.00011 33.5 -0.0 36 100-135 53-88 (147)
148 4fx0_A Probable transcriptiona 50.3 11 0.00036 31.6 3.1 36 99-134 50-85 (148)
149 2ek5_A Predicted transcription 50.2 19 0.00065 30.1 4.7 50 88-137 11-64 (129)
150 1hsj_A Fusion protein consisti 50.1 8.4 0.00029 37.6 2.8 45 90-134 409-453 (487)
151 1xmk_A Double-stranded RNA-spe 49.9 20 0.00069 28.4 4.5 56 85-142 11-67 (79)
152 3tqn_A Transcriptional regulat 49.6 16 0.00056 29.5 4.1 52 86-137 14-69 (113)
153 3dp7_A SAM-dependent methyltra 48.8 11 0.00037 35.9 3.3 48 90-139 40-87 (363)
154 3b73_A PHIH1 repressor-like pr 48.8 13 0.00045 31.0 3.4 53 83-137 11-65 (111)
155 2v79_A DNA replication protein 48.5 8.1 0.00028 33.0 2.1 37 98-134 48-84 (135)
156 1okr_A MECI, methicillin resis 48.1 9 0.00031 30.4 2.2 46 88-135 13-62 (123)
157 3neu_A LIN1836 protein; struct 48.0 25 0.00087 28.9 5.1 52 86-137 18-73 (125)
158 3sxy_A Transcriptional regulat 47.0 16 0.00056 32.2 4.0 41 97-137 31-71 (218)
159 1x19_A CRTF-related protein; m 46.8 10 0.00035 35.7 2.7 43 99-142 62-104 (359)
160 1z4h_A TORI, TOR inhibition pr 46.6 8.4 0.00029 28.6 1.7 26 98-123 7-32 (66)
161 1tw3_A COMT, carminomycin 4-O- 46.4 9.6 0.00033 35.7 2.5 50 90-142 44-93 (360)
162 2zdi_C Prefoldin subunit alpha 46.2 40 0.0014 28.8 6.2 100 88-187 12-138 (151)
163 2vz4_A Tipal, HTH-type transcr 45.9 31 0.001 27.8 5.1 37 102-142 2-40 (108)
164 3k2z_A LEXA repressor; winged 45.8 9.5 0.00032 33.5 2.2 37 98-134 21-57 (196)
165 3he5_B Synzip2; heterodimeric 44.7 58 0.002 23.9 5.8 36 154-189 10-45 (52)
166 3i4p_A Transcriptional regulat 44.7 14 0.00049 31.5 3.1 47 86-134 4-50 (162)
167 1q06_A Transcriptional regulat 44.5 33 0.0011 28.9 5.3 36 103-142 2-39 (135)
168 2qvo_A Uncharacterized protein 44.1 9.9 0.00034 29.4 1.9 35 98-132 27-61 (95)
169 1umq_A Photosynthetic apparatu 42.7 40 0.0014 26.7 5.2 41 81-123 36-76 (81)
170 3t8r_A Staphylococcus aureus C 42.3 22 0.00076 30.1 3.9 47 88-134 14-61 (143)
171 1p4x_A Staphylococcal accessor 42.3 14 0.00048 34.4 2.9 44 91-134 164-207 (250)
172 1uly_A Hypothetical protein PH 42.1 15 0.00053 32.7 3.0 44 88-134 23-66 (192)
173 1fp2_A Isoflavone O-methyltran 41.9 13 0.00043 35.1 2.5 52 90-142 41-97 (352)
174 2esh_A Conserved hypothetical 41.7 85 0.0029 25.3 7.2 44 91-134 19-68 (118)
175 2qko_A Possible transcriptiona 41.6 19 0.00066 30.2 3.4 43 78-120 25-67 (215)
176 2b0l_A GTP-sensing transcripti 41.3 9.9 0.00034 30.8 1.5 38 98-135 39-77 (102)
177 1mzb_A Ferric uptake regulatio 41.2 17 0.00059 30.2 3.0 46 90-135 23-73 (136)
178 2yy0_A C-MYC-binding protein; 40.7 56 0.0019 24.2 5.4 33 153-185 18-50 (53)
179 2o03_A Probable zinc uptake re 39.8 20 0.00068 29.7 3.2 46 90-136 16-66 (131)
180 2id3_A Putative transcriptiona 39.5 7.9 0.00027 33.2 0.7 44 78-121 37-80 (225)
181 3gbg_A TCP pilus virulence reg 39.1 23 0.00079 31.7 3.7 38 86-123 170-207 (276)
182 3m91_A Proteasome-associated A 38.9 80 0.0027 23.4 5.9 38 153-190 8-45 (51)
183 4dzo_A Mitotic spindle assembl 38.0 84 0.0029 26.7 6.8 35 154-188 4-38 (123)
184 3c7j_A Transcriptional regulat 37.6 19 0.00065 32.7 2.9 51 86-136 31-84 (237)
185 2zqm_A Prefoldin beta subunit 37.1 79 0.0027 25.3 6.3 74 111-188 32-111 (117)
186 2g9w_A Conserved hypothetical 36.7 21 0.00072 29.4 2.8 47 88-135 12-62 (138)
187 3bvo_A CO-chaperone protein HS 36.7 66 0.0023 29.3 6.4 51 79-131 55-122 (207)
188 2jn6_A Protein CGL2762, transp 36.3 7.5 0.00026 30.2 0.0 40 89-130 13-52 (97)
189 2pjp_A Selenocysteine-specific 35.9 28 0.00095 28.5 3.4 56 82-139 63-118 (121)
190 1j9i_A GPNU1 DBD;, terminase s 35.7 14 0.00048 27.3 1.4 40 101-143 2-43 (68)
191 2k4b_A Transcriptional regulat 35.5 17 0.00057 29.5 2.0 44 90-135 40-87 (99)
192 2kfs_A Conserved hypothetical 35.4 14 0.00049 32.8 1.6 26 98-123 28-53 (148)
193 1r8d_A Transcription activator 35.2 51 0.0018 26.4 4.9 37 102-142 3-41 (109)
194 2wt7_A Proto-oncogene protein 35.2 88 0.003 23.4 5.9 34 155-188 24-57 (63)
195 1d5y_A ROB transcription facto 35.2 20 0.00069 32.3 2.7 40 86-125 4-43 (292)
196 1zg3_A Isoflavanone 4'-O-methy 35.1 16 0.00056 34.4 2.1 44 90-134 35-81 (358)
197 3hrs_A Metalloregulator SCAR; 34.4 27 0.00091 31.3 3.3 39 98-136 17-55 (214)
198 3dcf_A Transcriptional regulat 34.4 25 0.00087 28.9 3.0 44 77-120 27-70 (218)
199 3ic7_A Putative transcriptiona 34.3 14 0.00047 30.7 1.3 52 86-137 16-71 (126)
200 3lwf_A LIN1550 protein, putati 34.0 26 0.00089 30.6 3.1 48 87-134 29-77 (159)
201 3dv8_A Transcriptional regulat 34.0 19 0.00066 30.4 2.2 39 101-140 169-207 (220)
202 3viq_B Mating-type switching p 33.7 27 0.00093 28.5 2.9 31 156-186 3-33 (85)
203 2p5k_A Arginine repressor; DNA 33.7 29 0.00099 24.4 2.8 38 91-134 11-53 (64)
204 1jko_C HIN recombinase, DNA-in 33.6 19 0.00063 23.7 1.7 22 102-123 22-43 (52)
205 3fiw_A Putative TETR-family tr 33.6 26 0.0009 30.4 3.1 46 76-121 20-65 (211)
206 1fp1_D Isoliquiritigenin 2'-O- 33.3 18 0.00061 34.4 2.1 34 101-134 62-101 (372)
207 3mcz_A O-methyltransferase; ad 33.2 21 0.00073 33.2 2.6 39 101-140 56-94 (352)
208 1ft9_A Carbon monoxide oxidati 33.2 35 0.0012 29.1 3.8 36 102-137 164-199 (222)
209 2rae_A Transcriptional regulat 32.3 39 0.0013 27.8 3.8 45 76-120 12-56 (207)
210 1hw1_A FADR, fatty acid metabo 32.0 21 0.00072 31.6 2.2 48 88-135 14-65 (239)
211 3e6c_C CPRK, cyclic nucleotide 32.0 28 0.00097 30.4 3.0 40 101-141 177-216 (250)
212 2qc0_A Uncharacterized protein 32.0 22 0.00076 34.7 2.6 37 100-136 310-346 (373)
213 2zcx_A SCO7815, TETR-family tr 31.8 23 0.0008 30.8 2.4 43 78-120 20-62 (231)
214 1xd7_A YWNA; structural genomi 31.5 48 0.0016 27.8 4.3 47 86-134 10-56 (145)
215 2fxa_A Protease production reg 31.4 11 0.00037 33.4 0.2 36 100-135 61-96 (207)
216 1tc3_C Protein (TC3 transposas 31.4 24 0.00083 22.6 1.9 26 102-127 22-47 (51)
217 1m1j_C Fibrinogen gamma chain; 31.2 20 0.00068 36.4 2.1 10 329-338 311-320 (409)
218 1hqc_A RUVB; extended AAA-ATPa 31.0 31 0.0011 31.2 3.2 54 83-136 245-300 (324)
219 3dkw_A DNR protein; CRP-FNR, H 30.9 32 0.0011 29.2 3.1 39 101-140 178-216 (227)
220 1fxk_A Prefoldin; archaeal pro 30.7 1.9E+02 0.0066 22.6 8.3 71 111-186 27-104 (107)
221 3bru_A Regulatory protein, TET 30.7 38 0.0013 28.2 3.5 43 78-120 27-69 (222)
222 2bgc_A PRFA; bacterial infecti 30.6 33 0.0011 29.9 3.2 39 101-140 169-208 (238)
223 3he0_A Transcriptional regulat 30.4 38 0.0013 27.5 3.3 42 78-119 8-49 (196)
224 2obp_A Putative DNA-binding pr 30.4 23 0.00078 29.0 2.0 38 97-134 32-69 (96)
225 3ppb_A Putative TETR family tr 30.4 41 0.0014 27.0 3.5 42 79-120 7-48 (195)
226 2zqm_A Prefoldin beta subunit 30.3 94 0.0032 24.8 5.7 34 156-189 72-105 (117)
227 3p9c_A Caffeic acid O-methyltr 30.2 27 0.00092 33.4 2.8 45 90-134 45-94 (364)
228 4dzn_A Coiled-coil peptide CC- 30.2 1E+02 0.0036 20.7 4.8 27 156-182 4-30 (33)
229 1p4x_A Staphylococcal accessor 30.2 35 0.0012 31.6 3.5 44 91-134 40-83 (250)
230 2fmy_A COOA, carbon monoxide o 29.5 32 0.0011 29.3 2.8 40 101-141 167-207 (220)
231 2dg7_A Putative transcriptiona 29.5 45 0.0015 27.3 3.7 40 82-121 8-47 (195)
232 4a6d_A Hydroxyindole O-methylt 29.4 28 0.00095 33.2 2.7 46 90-136 33-78 (353)
233 2iu5_A DHAS, YCEG, HTH-type dh 29.1 42 0.0014 27.7 3.5 38 83-120 15-52 (195)
234 2fe3_A Peroxide operon regulat 29.1 38 0.0013 28.5 3.2 46 90-136 27-77 (145)
235 3uo3_A J-type CO-chaperone JAC 28.9 3.1E+02 0.01 24.3 9.9 108 76-190 25-147 (181)
236 2qtq_A Transcriptional regulat 28.9 48 0.0016 27.1 3.8 44 77-120 12-55 (213)
237 2di3_A Bacterial regulatory pr 28.6 26 0.00089 31.3 2.2 37 97-133 23-60 (239)
238 2hs5_A Putative transcriptiona 28.6 29 0.00098 31.4 2.5 40 97-136 47-86 (239)
239 3edp_A LIN2111 protein; APC883 28.5 44 0.0015 30.3 3.8 51 85-135 13-67 (236)
240 1t2k_D Cyclic-AMP-dependent tr 28.3 1.4E+02 0.0047 22.0 5.9 33 156-188 24-56 (61)
241 3u1d_A Uncharacterized protein 28.3 41 0.0014 29.7 3.4 46 90-135 34-80 (151)
242 3q8t_A Beclin-1; autophagy, AT 28.2 1.1E+02 0.0038 24.9 5.7 35 157-191 21-55 (96)
243 2xdj_A Uncharacterized protein 28.2 1E+02 0.0035 24.7 5.4 38 153-190 26-63 (83)
244 3qqa_A CMER; alpha-helical, he 28.1 17 0.0006 30.0 0.9 44 76-119 14-57 (216)
245 4ev0_A Transcription regulator 28.1 40 0.0014 28.3 3.2 39 101-140 163-201 (216)
246 3gp4_A Transcriptional regulat 28.0 85 0.0029 26.7 5.3 33 154-186 88-120 (142)
247 2wv0_A YVOA, HTH-type transcri 28.0 49 0.0017 30.1 4.0 49 86-134 15-67 (243)
248 1nkp_B MAX protein, MYC proto- 27.8 97 0.0033 24.0 5.2 34 155-188 48-81 (83)
249 2j5u_A MREC protein; bacterial 27.8 37 0.0013 31.9 3.2 45 154-199 26-71 (255)
250 1fxk_A Prefoldin; archaeal pro 27.8 95 0.0033 24.4 5.2 26 162-187 73-98 (107)
251 3on2_A Probable transcriptiona 27.5 57 0.0019 26.3 3.9 42 79-120 10-51 (199)
252 1sgm_A Putative HTH-type trans 27.4 51 0.0017 26.5 3.6 38 83-120 8-45 (191)
253 2hxo_A Putative TETR-family tr 27.4 64 0.0022 28.5 4.6 44 77-120 12-55 (237)
254 2zhg_A Redox-sensitive transcr 27.1 99 0.0034 26.6 5.6 39 100-142 10-49 (154)
255 2w57_A Ferric uptake regulatio 27.1 31 0.0011 29.4 2.3 46 90-135 22-72 (150)
256 2aze_A Transcription factor DP 26.9 97 0.0033 27.8 5.5 19 215-233 66-84 (155)
257 2yve_A Transcriptional regulat 26.9 43 0.0015 27.6 3.1 37 84-120 7-43 (185)
258 1y6u_A XIS, excisionase from t 26.7 27 0.00091 26.9 1.7 26 98-123 13-38 (70)
259 1zk8_A Transcriptional regulat 26.7 43 0.0015 27.0 3.1 43 78-120 5-47 (183)
260 3kkc_A TETR family transcripti 26.6 22 0.00074 28.6 1.2 41 80-120 11-51 (177)
261 3qkx_A Uncharacterized HTH-typ 26.3 38 0.0013 27.1 2.6 37 83-119 10-46 (188)
262 1lwu_C Fibrinogen gamma chain; 26.0 30 0.001 34.1 2.3 101 151-256 2-104 (323)
263 2v7f_A RPS19, RPS19E SSU ribos 25.9 40 0.0014 29.5 2.9 45 89-136 58-116 (150)
264 4etp_A Kinesin-like protein KA 25.5 73 0.0025 31.8 5.0 52 155-206 4-59 (403)
265 3kz9_A SMCR; transcriptional r 25.4 54 0.0019 26.5 3.4 40 81-120 17-56 (206)
266 1sd4_A Penicillinase repressor 25.3 40 0.0014 26.6 2.5 46 88-135 13-62 (126)
267 1ci6_A Transcription factor AT 25.2 1.7E+02 0.0057 22.0 5.9 32 156-187 25-56 (63)
268 1jnm_A Proto-oncogene C-JUN; B 24.9 1.4E+02 0.0048 22.1 5.3 33 155-187 23-55 (62)
269 3cta_A Riboflavin kinase; stru 24.7 23 0.00078 31.7 1.1 38 98-135 24-61 (230)
270 3mwm_A ZUR, putative metal upt 24.6 47 0.0016 27.8 3.0 45 90-135 19-68 (139)
271 1fxk_C Protein (prefoldin); ar 24.5 1.3E+02 0.0043 24.9 5.6 33 157-189 91-123 (133)
272 3vp5_A Transcriptional regulat 24.3 55 0.0019 27.2 3.3 37 83-119 14-50 (189)
273 2xig_A Ferric uptake regulatio 24.1 54 0.0019 27.8 3.3 45 90-135 32-81 (150)
274 1gmj_A ATPase inhibitor; coile 24.1 1.5E+02 0.0053 24.1 5.7 28 163-190 53-80 (84)
275 3on4_A Transcriptional regulat 24.1 64 0.0022 25.8 3.6 43 78-120 7-49 (191)
276 3col_A Putative transcription 24.1 43 0.0015 26.9 2.6 43 78-120 7-49 (196)
277 3knw_A Putative transcriptiona 24.1 37 0.0013 27.8 2.2 44 77-120 10-53 (212)
278 1fx7_A Iron-dependent represso 24.0 21 0.00071 32.1 0.7 35 102-136 25-59 (230)
279 2qlz_A Transcription factor PF 23.9 38 0.0013 31.4 2.4 43 99-141 176-218 (232)
280 3him_A Probable transcriptiona 23.7 50 0.0017 26.8 2.9 43 78-120 13-55 (211)
281 3ke2_A Uncharacterized protein 23.2 55 0.0019 28.2 3.1 33 100-132 32-64 (117)
282 2yko_A LINE-1 ORF1P; RNA-bindi 23.0 81 0.0028 30.0 4.5 41 150-190 9-49 (233)
283 3bqz_B HTH-type transcriptiona 22.8 49 0.0017 26.7 2.7 36 85-120 6-41 (194)
284 3bwg_A Uncharacterized HTH-typ 22.8 69 0.0024 28.9 3.9 50 86-135 10-63 (239)
285 1g2h_A Transcriptional regulat 22.7 64 0.0022 23.5 3.0 38 82-123 17-55 (61)
286 3lwj_A Putative TETR-family tr 22.7 37 0.0013 27.7 1.9 43 78-120 9-51 (202)
287 4aci_A HTH-type transcriptiona 22.7 26 0.00088 28.5 0.9 45 77-121 10-54 (191)
288 2dg8_A Putative TETR-family tr 22.5 53 0.0018 27.0 2.9 40 81-120 9-48 (193)
289 3nmd_A CGMP dependent protein 22.0 1.8E+02 0.0061 23.1 5.6 8 156-163 21-28 (72)
290 3egq_A TETR family transcripti 21.9 50 0.0017 26.4 2.5 37 85-121 8-44 (170)
291 2zb9_A Putative transcriptiona 21.6 33 0.0011 28.6 1.4 44 78-121 20-63 (214)
292 3b02_A Transcriptional regulat 21.4 38 0.0013 28.3 1.8 38 102-140 140-177 (195)
293 2g7s_A Transcriptional regulat 21.4 46 0.0016 26.7 2.2 37 84-120 11-47 (194)
294 2hxi_A Putative transcriptiona 21.4 69 0.0023 28.5 3.6 45 76-120 24-68 (241)
295 1ntc_A Protein (nitrogen regul 21.2 73 0.0025 24.8 3.3 40 83-124 48-87 (91)
296 3ccy_A Putative TETR-family tr 21.2 1E+02 0.0034 25.4 4.3 42 79-120 12-53 (203)
297 3e97_A Transcriptional regulat 21.2 39 0.0013 28.8 1.9 39 101-140 175-213 (231)
298 3eqx_A FIC domain containing t 21.1 52 0.0018 32.4 2.9 36 100-135 310-345 (373)
299 2g7l_A TETR-family transcripti 21.0 72 0.0025 28.5 3.6 44 78-121 16-59 (243)
300 3hho_A CO-chaperone protein HS 20.9 2.2E+02 0.0074 25.0 6.7 97 82-190 19-142 (174)
301 3kcc_A Catabolite gene activat 20.7 1E+02 0.0035 27.2 4.6 38 101-139 217-254 (260)
302 3m9b_A Proteasome-associated A 20.6 88 0.003 30.0 4.3 38 153-190 53-90 (251)
303 3e7l_A Transcriptional regulat 20.5 75 0.0026 23.0 3.0 40 83-124 16-55 (63)
304 1zyb_A Transcription regulator 20.5 84 0.0029 27.1 3.9 39 101-140 186-224 (232)
305 3ryp_A Catabolite gene activat 20.5 1.1E+02 0.0036 25.5 4.4 39 101-140 167-205 (210)
306 2qq9_A Diphtheria toxin repres 20.3 89 0.0031 28.0 4.1 38 99-136 22-59 (226)
307 2oz6_A Virulence factor regula 20.3 39 0.0013 28.2 1.6 38 102-140 165-202 (207)
308 3eet_A Putative GNTR-family tr 20.2 85 0.0029 29.2 4.0 51 85-135 33-87 (272)
309 3u06_A Protein claret segregat 20.2 1.1E+02 0.0038 30.7 5.2 51 156-206 5-59 (412)
310 3f1b_A TETR-like transcription 20.2 49 0.0017 26.8 2.2 38 83-120 16-53 (203)
311 2ozu_A Histone acetyltransfera 20.2 1.1E+02 0.0037 30.0 4.8 50 81-133 188-243 (284)
312 3l7w_A Putative uncharacterize 20.1 71 0.0024 25.4 3.1 45 90-134 14-59 (108)
313 3gzi_A Transcriptional regulat 20.0 61 0.0021 26.8 2.7 40 82-121 18-57 (218)
314 2qen_A Walker-type ATPase; unk 20.0 92 0.0031 28.0 4.1 40 100-140 294-338 (350)
No 1
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=100.00 E-value=1.5e-37 Score=263.16 Aligned_cols=102 Identities=29% Similarity=0.470 Sum_probs=97.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccCHHHHhhccCCCCceEEEEeCCCCCeEEecCC
Q 015627 152 VDADASILQADIDNLSMEELRVDEQTRELRERLRELIENENNRKWLFVTEEDIKNLHCFQNQTLIAIKAPQGTTLEVPDP 231 (403)
Q Consensus 152 ~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted~~n~~~aYVT~eDI~~l~~f~~qTvIAIKAP~gT~LEVPdP 231 (403)
+..++..||+|+++|..+|+.||++|++|+++|++|++|+.|.+|+|||++||++|+||++|||||||||+||+||||+|
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~~n~~~aYVT~~Di~~i~~f~~qtviaIkAP~gT~LeVpdp 83 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDS 83 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEEEEEEECCTTCEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceecHHHHhcCcCCCcCeEEEEECCCCCeeeeCCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCcEEEEEecCCCceEEEEecC
Q 015627 232 DEAVDYPQRRYRIILRSTMGPIDVYLVSR 260 (403)
Q Consensus 232 ~e~~~~~q~~YqI~LkSt~GPIdVyL~~~ 260 (403)
++ +|||||||++||||||||++
T Consensus 84 ~~-------~yqi~LkS~~GPIdV~L~~~ 105 (106)
T 2aze_B 84 SE-------NFQISLKSKQGPIDVFLCPE 105 (106)
T ss_dssp SS-------CEEEEEECSSSCCEEECCTT
T ss_pred Cc-------ceEEEEECCCCCEEEEEeCC
Confidence 84 69999999999999999996
No 2
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.95 E-value=1.3e-29 Score=203.38 Aligned_cols=74 Identities=66% Similarity=1.037 Sum_probs=65.8
Q ss_pred CCCCCCCCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhcc-ceeehhhhHHHhhhccchhhccCCeEEEeccC
Q 015627 72 TPAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEV-QKRRIYDITNVLEGIGLIEKKLKNRIRWKGLD 145 (403)
Q Consensus 72 ~p~~~~R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIeK~sKN~i~W~G~~ 145 (403)
+|.+.+|+++||++||++||++|+++++++++|++||+.|+| +|||||||+|||||||||+|.+||.|+|+|.+
T Consensus 1 ~~~~~~R~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~k~~~~W~G~~ 75 (76)
T 1cf7_A 1 PPGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVG 75 (76)
T ss_dssp -----CTTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEETTEEEEC---
T ss_pred CCCCCCCccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhcceeecCCCcEEEeCCC
Confidence 366789999999999999999999999999999999999999 99999999999999999999999999999975
No 3
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.31 E-value=7.3e-13 Score=110.64 Aligned_cols=67 Identities=30% Similarity=0.540 Sum_probs=46.1
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHh-------------------ccceeehhhhHHHhhhccchhhccCCe
Q 015627 78 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETL-------------------EVQKRRIYDITNVLEGIGLIEKKLKNR 138 (403)
Q Consensus 78 R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L-------------------~VqKRRIYDItNVLEgIGLIeK~sKN~ 138 (403)
+..+.|..++.+..+.++. .+....+++|+.| ..+||||||++|||++||||+| .|+.
T Consensus 7 k~~~GLr~fS~kVcekVk~--k~~Tty~eVAdeLV~e~~~~~~~~~~~~~~d~~~~rRRvYD~~NVl~a~gii~K-~k~~ 83 (95)
T 1cf7_B 7 KNGKGLRHFSMKVCEKVQR--KGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISK-EKKE 83 (95)
T ss_dssp --CCHHHHHHHHHHHHHHH--HSEECHHHHHHHHHHHHHTCTTCCGGGSHHHHHHHHHHHHHHHHHHHHTTSBCC-CSSC
T ss_pred ccCccHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHhcccccCccchhcccccchhhHHHHHHHHHHhcceec-CCCE
Confidence 3445555555555555543 2333455555444 4599999999999999999999 7999
Q ss_pred EEEeccCCC
Q 015627 139 IRWKGLDNS 147 (403)
Q Consensus 139 i~W~G~~~s 147 (403)
|+|+|++.+
T Consensus 84 i~W~g~~~~ 92 (95)
T 1cf7_B 84 IKWIGLPTN 92 (95)
T ss_dssp EEBCCCC--
T ss_pred EEEecCCcc
Confidence 999998754
No 4
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=92.69 E-value=0.1 Score=42.24 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=53.7
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEEEec
Q 015627 80 DSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKG 143 (403)
Q Consensus 80 dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~G 143 (403)
|-.-..+.++.+.+|+. ++ +...++|+.||++|.-++=.++-||.=|+|.+..-+--+|.=
T Consensus 12 d~~~~~~~~~IL~lL~~--~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP~W~~ 72 (82)
T 1oyi_A 12 ERSNAEIVCEAIKTIGI--EG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPRWFM 72 (82)
T ss_dssp -CCSHHHHHHHHHHHSS--ST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSCEEES
T ss_pred ccchHHHHHHHHHHHHH--cC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCccee
Confidence 44566788999999984 45 999999999999999999999999999999999999999984
No 5
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=92.46 E-value=0.088 Score=40.59 Aligned_cols=44 Identities=23% Similarity=0.520 Sum_probs=39.6
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchh
Q 015627 88 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIE 132 (403)
Q Consensus 88 kKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe 132 (403)
.+.++++++ .+|++|+..+|.+++|.|--+||+.+=||.=|||.
T Consensus 13 ~~lL~yIr~-sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 13 RELLDYIVN-NGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHH-TTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHH-cCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 456777766 68999999999999999999999999999999985
No 6
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=92.41 E-value=0.094 Score=41.05 Aligned_cols=55 Identities=15% Similarity=0.274 Sum_probs=47.4
Q ss_pred HHHHHHHhhCC-CCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEEEe
Q 015627 88 KKFINLIKHAE-DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 142 (403)
Q Consensus 88 kKFI~Ll~~ap-~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 142 (403)
++.+.+|.+.+ +..+...++|+.|+|.|+.|.-.+.-||.-|+|.+...+.=.|.
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W~ 72 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWK 72 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCceE
Confidence 66788887665 66799999999999999999999999999999999866556675
No 7
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=91.79 E-value=0.14 Score=40.84 Aligned_cols=56 Identities=14% Similarity=0.268 Sum_probs=47.6
Q ss_pred HHHHHHHHhhCC-CCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEEEe
Q 015627 87 TKKFINLIKHAE-DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 142 (403)
Q Consensus 87 TkKFI~Ll~~ap-~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 142 (403)
-++.+.+|.+.+ +..+...++|+.|+|.|+-|.-.+.-||.-|+|.+...+.=.|.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~ 68 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWK 68 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeE
Confidence 466778777654 55799999999999999999999999999999998766667775
No 8
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=91.56 E-value=0.15 Score=38.60 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeE
Q 015627 86 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRI 139 (403)
Q Consensus 86 LTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i 139 (403)
.-++.+++|.+ .+..+.+.++|+.|++.|--++-+++.|+.-|+|....+..|
T Consensus 11 ~~~~IL~~L~~-~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~~~G~y 63 (67)
T 2heo_A 11 LEQKILQVLSD-DGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPKYW 63 (67)
T ss_dssp HHHHHHHHHHH-HCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEETTEE
T ss_pred HHHHHHHHHHH-cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecCCCceE
Confidence 34578888876 335699999999999999999999999999999987544433
No 9
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=90.50 E-value=0.49 Score=38.20 Aligned_cols=46 Identities=9% Similarity=0.098 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 85 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 85 lLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
.+.-..+..+. .+ +....+|..+++..|++-.+++.|+.-|||++.
T Consensus 8 eIi~~IL~~i~---~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 8 EIIQAILEACK---SG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp HHHHHHHHHHT---TC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH---cC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 34445555554 34 889999999999999999999999999999998
No 10
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=89.93 E-value=1.5 Score=34.47 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=38.4
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCe
Q 015627 89 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNR 138 (403)
Q Consensus 89 KFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~ 138 (403)
+.+.++. ++.+.+.++|+.|++.+-.++-.++.|+.-|+|++.....
T Consensus 25 ~IL~~L~---~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~gr 71 (114)
T 2oqg_A 25 EILTELG---RADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGR 71 (114)
T ss_dssp HHHHHHH---HSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecCC
Confidence 3555563 2458999999999999999999999999999998764443
No 11
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=89.03 E-value=0.49 Score=39.20 Aligned_cols=47 Identities=9% Similarity=0.194 Sum_probs=39.3
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 88 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 88 kKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
.+.+.++...++.-+...++|+.|++.|-.+|-.++.|+..|+|.|.
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 34566666554433999999999999999999999999999999986
No 12
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=87.96 E-value=0.44 Score=36.42 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=37.7
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhh
Q 015627 88 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEK 133 (403)
Q Consensus 88 kKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 133 (403)
++.+.++... +.+...++|+.|++.+.-++-+++.|+.-|+|++
T Consensus 3 ~~Il~~L~~~--~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 3 NEILEFLNRH--NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHHS--CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3456666553 4689999999999999999999999999999984
No 13
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=87.94 E-value=2 Score=35.12 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=33.6
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
++.++...+++.+...++|+.|++.+=.+.-+++-||.-|||+|..
T Consensus 46 vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 46 MIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp HHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC-
T ss_pred HHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 4555556666789999999999999999999999999999999883
No 14
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=87.80 E-value=1.9 Score=36.63 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=33.7
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 99 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 99 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
++.+.+.++|+.|++.+-.+.-+++-||.-|||+|..
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 3459999999999999999999999999999999874
No 15
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=86.75 E-value=1.4 Score=35.35 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=40.5
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 89 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 89 KFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
..+.++...+++.+.+.++|+.|++.+-.+.-+++-||.-|+|+|.
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 3555566666678999999999999999999999999999999987
No 16
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=83.80 E-value=0.7 Score=36.12 Aligned_cols=48 Identities=23% Similarity=0.169 Sum_probs=39.7
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEEE
Q 015627 89 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRW 141 (403)
Q Consensus 89 KFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W 141 (403)
+.+.++ .+.+.+.++|+.|++.+--++-.++.|+.-|+|++.. ..|..
T Consensus 35 ~Il~~L----~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~-g~y~l 82 (96)
T 1y0u_A 35 KILRML----DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG-ERWVV 82 (96)
T ss_dssp HHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEE
T ss_pred HHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC-CEEEE
Confidence 345555 3568999999999999999999999999999999876 54443
No 17
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=83.43 E-value=3.9 Score=32.64 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=37.6
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 89 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 89 KFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
+.+.++.-. ++.+.+.++|+.|++.|=.++.+++.||.-|+|++.
T Consensus 30 ~il~~L~~~-~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 30 AVYAILYLS-DKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHC-SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 345555323 356999999999999999999999999999999986
No 18
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=83.40 E-value=0.71 Score=37.21 Aligned_cols=46 Identities=15% Similarity=0.222 Sum_probs=38.3
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCe
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNR 138 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~ 138 (403)
.+.++. .+.+.+.++|+.|++.+..++-.++.|+..|||++...+.
T Consensus 30 IL~~L~---~~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr 75 (108)
T 2kko_A 30 ILDLLA---QGERAVEAIATATGMNLTTASANLQALKSGGLVEARREGT 75 (108)
T ss_dssp HHHHHT---TCCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETT
T ss_pred HHHHHH---cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 444554 3678999999999999999999999999999998765444
No 19
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=83.31 E-value=1.7 Score=34.96 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=34.2
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 99 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 99 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
.+.+...++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEee
Confidence 667999999999999999999999999999999986
No 20
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=82.43 E-value=0.89 Score=34.75 Aligned_cols=46 Identities=7% Similarity=0.067 Sum_probs=38.3
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCC
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 137 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 137 (403)
.+.++. .++.+.+.++|+.|++.+--++-.++.|+.-|+|++....
T Consensus 29 il~~l~--~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~ 74 (99)
T 3cuo_A 29 ILCMLS--GSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDA 74 (99)
T ss_dssp HHHHHT--TCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHH--hCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 444443 3557899999999999999999999999999999987443
No 21
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=82.42 E-value=1.8 Score=34.75 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=36.9
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.+.++.. .+.+.+.++|+.|++.+-.++-+++-||.-|+|++..
T Consensus 38 iL~~l~~--~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 38 ILQKIYF--EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp HHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHH--cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecC
Confidence 3444433 3468999999999999999999999999999999873
No 22
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=81.88 E-value=1.3 Score=36.34 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=38.5
Q ss_pred HHHHHHhhC-CCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 89 KFINLIKHA-EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 89 KFI~Ll~~a-p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
+.+.++... +++.+...++|+.+++.++-++.|++.|+.-|+|+..
T Consensus 13 ~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 13 TIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEec
Confidence 344445443 4678999999999999999999999999999999876
No 23
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=81.81 E-value=0.82 Score=34.94 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=37.8
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 89 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 89 KFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
+.+.++.. .+.+...++|+.|++.+-.+|.+++.|+.-|+|++..
T Consensus 24 ~il~~l~~--~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 24 RIYSLLLE--RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 34555544 3458999999999999999999999999999999864
No 24
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=81.52 E-value=0.71 Score=35.42 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=34.8
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhccchhhccC
Q 015627 99 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 136 (403)
Q Consensus 99 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 136 (403)
++.+...++|+.|++.+-.+|.+++.|+.-|+|++...
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecc
Confidence 45689999999999999999999999999999998743
No 25
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=81.49 E-value=1 Score=36.15 Aligned_cols=47 Identities=9% Similarity=0.127 Sum_probs=39.9
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 89 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 89 KFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.++.++...+++.+...++|+.|++.+-.++-+++-||.-|+|++..
T Consensus 38 ~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 38 TIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeC
Confidence 34555656655579999999999999999999999999999999873
No 26
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=81.43 E-value=1.2 Score=36.58 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=34.1
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchhhccC
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 136 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 136 (403)
+.+.+.++|+.|+|.+-.+.-+++.||.-|+|++...
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~~ 57 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKY 57 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeeC
Confidence 4599999999999999999999999999999998743
No 27
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=81.28 E-value=0.82 Score=34.70 Aligned_cols=47 Identities=13% Similarity=0.386 Sum_probs=39.8
Q ss_pred HHHHHHhhCCCCcccHHHHHHHh-----ccceeehhhhHHHhhhccchhhcc
Q 015627 89 KFINLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 89 KFI~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
..++++...+++.+.+.++++.| ++.+=-+|-.++.|+..|+|.+..
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEe
Confidence 35666665443689999999999 999999999999999999999863
No 28
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=80.85 E-value=0.35 Score=47.26 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=41.8
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEEEec
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKG 143 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~G 143 (403)
++.|+.. |.....++|+.+|+.|.++|++++.|+.-|||++...+..+|.-
T Consensus 24 Y~~Ll~~---g~~t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~~g~p~~y~a 74 (342)
T 3qph_A 24 YWTLLVY---GPSTAKEISTKSGIPYNRVYDTISSLKLRGFVTEIEGTPKVYAA 74 (342)
T ss_dssp SHHHHHH---HHHHHSCCSSSTTSSSCSCCHHHHHHHHHTSEEEECCTTCEEEE
T ss_pred HHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCceeEEEE
Confidence 5666643 45777889999999999999999999999999988666666663
No 29
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=80.02 E-value=0.98 Score=36.17 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=50.6
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEEEe
Q 015627 80 DSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 142 (403)
Q Consensus 80 dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 142 (403)
|.....+.+++|..|. +++.+..+.+|.+||+.|+-|=-++.-|+.=|.|.+...+.-.|.
T Consensus 10 ~~~~~~~v~~~i~~L~--~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~PP~W~ 70 (75)
T 1sfu_A 10 DAEIFSLVKKEVLSLN--TNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSNPPKWF 70 (75)
T ss_dssp SHHHHHHHHHHHHTSC--TTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCEEE
T ss_pred hHHHHHHHHHHHHhCC--CCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCCCCCCcc
Confidence 3455566667776553 445599999999999999999999999999999999999999996
No 30
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=79.22 E-value=2.3 Score=34.35 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=37.2
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
.+.++... .+.+...++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 40 iL~~l~~~-~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 40 VLGAIDRL-GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHc-CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeC
Confidence 34444441 456999999999999999999999999999999987
No 31
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=78.93 E-value=4.9 Score=32.51 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=36.1
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
.+.++.. .+.+.+.++|+.|++.+=.+.-+++-||.-|+|+|.
T Consensus 45 iL~~l~~--~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 45 IISVLSS--ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHHHHHH--SSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHc--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 4444444 347999999999999999999999999999999987
No 32
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=78.80 E-value=1.6 Score=35.52 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=35.4
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 98 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 98 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.++.+.+.++|+.|++.+--++-+++.||.-|||++..
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 45779999999999999999999999999999999875
No 33
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=78.47 E-value=1.7 Score=38.20 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=40.9
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccc-hhhccCCeEEEe
Q 015627 88 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGL-IEKKLKNRIRWK 142 (403)
Q Consensus 88 kKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGL-IeK~sKN~i~W~ 142 (403)
.+.+.+|++. ++.+...++|+.|+|++|-||.=++.|+..|+ |.+. ..-|.+.
T Consensus 24 ~~Il~~L~~~-~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~~-~~Gy~l~ 77 (187)
T 1j5y_A 24 KSIVRILERS-KEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVAT-PRGYVLA 77 (187)
T ss_dssp HHHHHHHHHC-SSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEE-TTEEECC
T ss_pred HHHHHHHHHc-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE-CCEEEEC
Confidence 3456666653 34599999999999999999999999999999 8764 3445444
No 34
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=78.24 E-value=1.8 Score=41.97 Aligned_cols=57 Identities=12% Similarity=0.204 Sum_probs=48.7
Q ss_pred HHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccc-hhhccCCeEEEec
Q 015627 87 TKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGL-IEKKLKNRIRWKG 143 (403)
Q Consensus 87 TkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGL-IeK~sKN~i~W~G 143 (403)
-++.+++|.++.+..+.-.++|+.|+|+|+-|+--++.|+..|+ |+...+.-|+...
T Consensus 5 ~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~~~~~GY~L~~ 62 (323)
T 3rkx_A 5 SQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQ 62 (323)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEEETTTEEEEEE
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEEeCCCeEEEec
Confidence 35788888877788999999999999999999999999999998 6655555688775
No 35
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=78.08 E-value=2.6 Score=34.23 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=40.3
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEEE
Q 015627 89 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRW 141 (403)
Q Consensus 89 KFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W 141 (403)
+.+.++. ++.+...++|+.|++.+-.+.-.+++|+..|||++.......+
T Consensus 22 ~Il~~L~---~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~ 71 (118)
T 3f6o_A 22 AVLGRLS---RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRT 71 (118)
T ss_dssp HHHHHHH---TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHH---hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEE
Confidence 3555565 4678999999999999999999999999999998765443333
No 36
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=77.87 E-value=2.2 Score=35.83 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=36.1
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.+.++....++.+...++|+.|++.+=.+.-+++-||.-|||+|..
T Consensus 51 vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 96 (168)
T 3u2r_A 51 TLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTR 96 (168)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecC
Confidence 4444555445689999999999999999999999999999999873
No 37
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=77.10 E-value=1.6 Score=35.52 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=39.2
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
++.++...+++.+...++|+.|++.+=.+.-+++-||.-|+|+|.
T Consensus 42 vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 42 VLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 445555555578999999999999999999999999999999986
No 38
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=75.92 E-value=1.5 Score=34.83 Aligned_cols=46 Identities=11% Similarity=0.286 Sum_probs=38.0
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCC
Q 015627 89 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 137 (403)
Q Consensus 89 KFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 137 (403)
+.+.++. ++.+.+.++|+.|++.+-.++-.++.|+..|+|++...+
T Consensus 30 ~IL~~L~---~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~g 75 (106)
T 1r1u_A 30 RIMELLS---VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQG 75 (106)
T ss_dssp HHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3445554 355899999999999999999999999999999976443
No 39
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=75.85 E-value=12 Score=30.91 Aligned_cols=37 Identities=11% Similarity=0.150 Sum_probs=34.1
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 99 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 99 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.+.+...++|+.|++.|=.+.-+++-||.-|||+|..
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 3568999999999999999999999999999999873
No 40
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=75.78 E-value=2.6 Score=39.42 Aligned_cols=50 Identities=14% Similarity=0.286 Sum_probs=39.4
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEE
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 140 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 140 (403)
.++++...+ +.+.|.++|+.|++.|=.+|-|++.|+..|+|++.....|.
T Consensus 35 IL~~l~~~~-~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~~~~Y~ 84 (275)
T 3mq0_A 35 ILDLVAGSP-RDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSADGTLR 84 (275)
T ss_dssp HHHHHHHCS-SCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECTTSEEE
T ss_pred HHHHHhhCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCcEE
Confidence 455565544 56999999999999999999999999999999998644443
No 41
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=74.95 E-value=2.1 Score=33.16 Aligned_cols=53 Identities=17% Similarity=0.309 Sum_probs=40.8
Q ss_pred cCcHHHHHHHHHHHHhhCCCC-cccHHHHHHHhccceee-hhhhHHHhhhccchh
Q 015627 80 DSSLGLLTKKFINLIKHAEDG-ILDLNKAAETLEVQKRR-IYDITNVLEGIGLIE 132 (403)
Q Consensus 80 dkSLglLTkKFI~Ll~~ap~g-~ldLn~aA~~L~VqKRR-IYDItNVLEgIGLIe 132 (403)
...+|.+.+-|.-|+--...+ .+.+.++|+.|++.+-. ++-+++.||.-|+|+
T Consensus 8 ~~~~g~~~~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 8 RLQFGHLIRILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp GSBHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 345566666554433222233 68999999999999999 999999999999999
No 42
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=74.65 E-value=5.9 Score=31.76 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=33.2
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
+.+...++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 46899999999999999999999999999999986
No 43
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=74.33 E-value=2.5 Score=34.84 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=33.1
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
+.+.+.++|+.|++.+-.++-+++.||.-|+|++.
T Consensus 57 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 36899999999999999999999999999999986
No 44
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=74.31 E-value=2.5 Score=34.42 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=33.6
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
+.+.+.++|+.|++.+-.++-+++-||.-|+|++..
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecC
Confidence 468999999999999999999999999999999873
No 45
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=73.98 E-value=0.66 Score=37.53 Aligned_cols=37 Identities=14% Similarity=0.328 Sum_probs=34.1
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 99 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 99 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.+.+...++|+.|++.+-.++-+++-||.-|+|++..
T Consensus 49 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 49 ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeec
Confidence 3468999999999999999999999999999999874
No 46
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=73.75 E-value=1.9 Score=33.42 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=34.9
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchhhccCC
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 137 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 137 (403)
+.+...++|+.|++.+..++--++.|+.-|||++....
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEA 72 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 78999999999999999999999999999999876443
No 47
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=73.27 E-value=7.8 Score=29.32 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=36.7
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.+.++.. ++.+...++|+.|++.+-.+|-.++.||.-|+|++..
T Consensus 21 iL~~L~~--~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 21 IMIFLLP--RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHHHHHH--HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHh--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4444433 3468999999999999999999999999999999753
No 48
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=73.08 E-value=7.9 Score=30.90 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=34.9
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 98 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 98 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
..+.+...++|+.|++.+-.++.+++-||.-|+|++..
T Consensus 49 ~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp CSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred cCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecC
Confidence 45678999999999999999999999999999999873
No 49
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=72.75 E-value=2.5 Score=35.25 Aligned_cols=37 Identities=27% Similarity=0.147 Sum_probs=34.2
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 99 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 99 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.+.+...++|+.|++.+=.+.-+++-||.-|||+|..
T Consensus 58 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp CTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecC
Confidence 3568999999999999999999999999999999873
No 50
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=72.70 E-value=2.4 Score=33.94 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=34.8
Q ss_pred CCcccHHHHHHHh-ccceeehhhhHHHhhhccchhhcc
Q 015627 99 DGILDLNKAAETL-EVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 99 ~g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
++.+...++|+.| ++.+..++..++.||.-|||+|..
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~ 62 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIV 62 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEee
Confidence 5779999999999 999999999999999999999874
No 51
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=72.43 E-value=2.5 Score=33.80 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=33.2
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
+...+.++|+.|++.+--++-.++.||..|+|.+..
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 468999999999999999999999999999998764
No 52
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=72.28 E-value=3.3 Score=33.42 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHH
Q 015627 86 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNV 124 (403)
Q Consensus 86 LTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNV 124 (403)
+..++++++.......++|.++|+.+++.+|.|.-+..-
T Consensus 8 ~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 8 MRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 568899999999888999999999999999998877654
No 53
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=72.28 E-value=19 Score=32.51 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=37.3
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 89 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 89 KFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
+.+.++. .+.+...++|+.|++.+--+|-.++.|+.-|||++..
T Consensus 19 ~IL~~L~---~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~ 62 (202)
T 2p4w_A 19 RILFLLT---KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRV 62 (202)
T ss_dssp HHHHHHH---HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEe
Confidence 3455554 3568999999999999999999999999999999853
No 54
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=72.21 E-value=3.5 Score=32.80 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=36.7
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
.+.++.. .+.+...++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 34 iL~~l~~--~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~ 76 (138)
T 3bpv_A 34 CLLRIHR--EPGIKQDELATFFHVDKGTIARTLRRLEESGFIERE 76 (138)
T ss_dssp HHHHHHH--STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 3444444 366899999999999999999999999999999985
No 55
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=72.16 E-value=0.71 Score=36.96 Aligned_cols=57 Identities=25% Similarity=0.423 Sum_probs=44.6
Q ss_pred CCCCcCcHHHHHHHH----HHHHhhCCCCcccHHHHHHHh-ccceeehhhhHHHhhhccchhhcc
Q 015627 76 SCRYDSSLGLLTKKF----INLIKHAEDGILDLNKAAETL-EVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 76 ~~R~dkSLglLTkKF----I~Ll~~ap~g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.|.....|..+..++ +.++. .+.+...++++.| ++.+..++-.++.||.-|||+|..
T Consensus 12 ~c~~~~~l~~l~~~~~~~IL~~L~---~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~ 73 (107)
T 2fsw_A 12 ECPVRKSMQIFAGKWTLLIIFQIN---RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQ 73 (107)
T ss_dssp TCHHHHHHHHHTSSSHHHHHHHHT---TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHcCccHHHHHHHHH---hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEee
Confidence 465666667666543 22332 5779999999999 599999999999999999999874
No 56
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=72.12 E-value=1.8 Score=36.18 Aligned_cols=45 Identities=24% Similarity=0.391 Sum_probs=40.4
Q ss_pred HHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 91 INLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 91 I~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
+.++..++++.+...++|+.|++.|=.+--+++-||.-|||+|..
T Consensus 41 L~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 41 LVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp HHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEee
Confidence 445566788899999999999999999999999999999999873
No 57
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=72.04 E-value=3.1 Score=33.81 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=33.6
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
+.+...++|+.|++.+-.+.-+++-||.-|+|++..
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecC
Confidence 468999999999999999999999999999999863
No 58
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=71.86 E-value=2.4 Score=33.43 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=39.6
Q ss_pred HHHHHHHhhC----CCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 88 KKFINLIKHA----EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 88 kKFI~Ll~~a----p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
++.+++++.. .++.+.+.++|+.|+|+.--+..-++.||.-|+|.|.
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEec
Confidence 4455555554 3688999999999999988899999999999999987
No 59
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=71.53 E-value=1.3 Score=37.67 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=45.7
Q ss_pred CCCCcCcHHHHHHHH----HHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 76 SCRYDSSLGLLTKKF----INLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 76 ~~R~dkSLglLTkKF----I~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.|.....|..+..++ +..+. .+.+...++++.|++.+..+...++.||.-|||+|..
T Consensus 11 ~c~~~~~l~~l~~~w~l~IL~~L~---~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~ 71 (146)
T 2f2e_A 11 SCPVARPLDVIGDGWSMLIVRDAF---EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVP 71 (146)
T ss_dssp SCTTTTTHHHHCSSSHHHHHHHHH---TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcHHHHHHHhCCchHHHHHHHHH---hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 455666777776543 23332 5679999999999999999999999999999999874
No 60
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=70.99 E-value=3.7 Score=35.45 Aligned_cols=51 Identities=22% Similarity=0.404 Sum_probs=41.1
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEEEe
Q 015627 89 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 142 (403)
Q Consensus 89 KFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 142 (403)
+.+.+|. .+.+.+.++|+.|++.+-.++-.+.+|+.-|||++....+..+.
T Consensus 62 ~IL~~L~---~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y 112 (151)
T 3f6v_A 62 RLVQLLT---SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYY 112 (151)
T ss_dssp HHHHHGG---GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEE
Confidence 3455554 46699999999999999999999999999999998755544443
No 61
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=70.58 E-value=3.5 Score=32.60 Aligned_cols=43 Identities=7% Similarity=0.096 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhc
Q 015627 86 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGI 128 (403)
Q Consensus 86 LTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgI 128 (403)
+..+++.++.+.....++|.++|+.+|+++|.|+-+..-.-|+
T Consensus 6 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~ 48 (108)
T 3oou_A 6 IIQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGE 48 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCc
Confidence 4678888998888889999999999999999999887654443
No 62
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=70.56 E-value=6 Score=34.04 Aligned_cols=39 Identities=13% Similarity=0.149 Sum_probs=28.4
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhccchh--hccCCeEEEec
Q 015627 101 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIE--KKLKNRIRWKG 143 (403)
Q Consensus 101 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe--K~sKN~i~W~G 143 (403)
.+.+.++|+.+||..|-|- -.|.+|||. +...|.|+.-.
T Consensus 16 ~~~I~evA~~~gvs~~tLR----~Ye~~Gll~p~~r~~~g~R~Y~ 56 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIR----YYDKQGLFPFLQRNEKGDRIFN 56 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHH----HHHHTTCCTTCEECTTCCEEBC
T ss_pred ceeHHHHHHHHCcCHHHHH----HHHHCCCCCCCcCCCCCCeecC
Confidence 5889999999999988442 226788885 44567676643
No 63
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=70.45 E-value=2.7 Score=38.95 Aligned_cols=55 Identities=22% Similarity=0.365 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHH-HhhhccchhhccCC
Q 015627 83 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITN-VLEGIGLIEKKLKN 137 (403)
Q Consensus 83 LglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItN-VLEgIGLIeK~sKN 137 (403)
|..+-++++..+-...++.+++.++|+.||+.++.+|+.+. .|...|||.+..+.
T Consensus 261 l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g 316 (338)
T 3pfi_A 261 FDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKG 316 (338)
T ss_dssp CCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTE
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCc
Confidence 44455777777666566789999999999999999999998 99999999877544
No 64
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=69.72 E-value=5.8 Score=31.89 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=36.6
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 88 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 88 kKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
-..+.++.. .+ +...++|+.|++.|=.+.-+++.||.-|+|+|..
T Consensus 41 ~~iL~~l~~--~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 41 EHILMLLSE--ES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHHTT--CC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHh--CC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 344455544 44 9999999999999999999999999999999874
No 65
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=69.62 E-value=2.6 Score=34.15 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=32.5
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 101 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 101 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
.+.+.++|+.|++.+-.++-+++-||.-|+|+|.
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 78 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQ 78 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 3999999999999999999999999999999986
No 66
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=69.61 E-value=19 Score=28.74 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=33.8
Q ss_pred CcccHHHHHHHh-ccceeehhhhHHHhhhccchhhcc
Q 015627 100 GILDLNKAAETL-EVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 100 g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
+.+...++|+.| ++.+-.++.+++.||.-|||+|..
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~ 70 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRES 70 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEee
Confidence 568999999999 999999999999999999999874
No 67
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=69.56 E-value=1.4 Score=35.88 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=35.3
Q ss_pred CCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 97 AEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 97 ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
...+.+...++|+.|++.+-.+.-+++-||.-|+|+|.
T Consensus 46 ~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 83 (140)
T 3hsr_A 46 ENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRT 83 (140)
T ss_dssp CTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEec
Confidence 34678999999999999999999999999999999987
No 68
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=69.54 E-value=2.6 Score=34.60 Aligned_cols=46 Identities=15% Similarity=0.087 Sum_probs=36.8
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCC
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 137 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 137 (403)
.+.++.. .+.+.+.++|+.|++.+-.++-.++.|+..|||++...+
T Consensus 47 IL~~L~~--~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~g 92 (122)
T 1u2w_A 47 ITYALCQ--DEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEG 92 (122)
T ss_dssp HHHHHHH--SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC---
T ss_pred HHHHHHH--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4555543 456899999999999999999999999999999876433
No 69
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=69.43 E-value=4.3 Score=32.30 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhh
Q 015627 85 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEG 127 (403)
Q Consensus 85 lLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEg 127 (403)
.+..++++++.......++|.++|+.+++.+|.|+-+..-.-|
T Consensus 7 ~~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G 49 (113)
T 3oio_A 7 PKLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLG 49 (113)
T ss_dssp HHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 3567899999998888899999999999999999888765433
No 70
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=69.15 E-value=3.4 Score=33.85 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=39.0
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 88 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 88 kKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
.+.+.+++. ++.+...++|+.||+++..++..++-|+.-|+|.+.
T Consensus 7 ~~il~~L~~--~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 7 KIILEILEK--DARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 466777754 456799999999999999999999999999999875
No 71
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=69.12 E-value=3 Score=34.81 Aligned_cols=48 Identities=17% Similarity=0.338 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 85 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 85 lLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
.+-++.+.+++. ++.+...++|+.||+++..+...++-|+.-|+|.+.
T Consensus 5 ~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 5 QIDLNIIEELKK--DSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHH--CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 344678888865 366999999999999999999999999999999874
No 72
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=68.95 E-value=6.6 Score=27.25 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=25.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015627 151 EVDADASILQADIDNLSMEELRVDEQTREL 180 (403)
Q Consensus 151 ~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~ 180 (403)
.+-.+....+++|++|+.+-..|+++|+++
T Consensus 4 ~mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 4 GMRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 345667889999999999999999999875
No 73
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=68.88 E-value=2.7 Score=36.47 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=40.2
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
.+.++...+++.+.+.++|+.|++.+=.+.-+++-||.-|||+|.
T Consensus 46 vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 90 (189)
T 3nqo_A 46 TILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVI 90 (189)
T ss_dssp HHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 455566667789999999999999999999999999999999986
No 74
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=68.57 E-value=3.5 Score=32.49 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=38.7
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 88 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 88 kKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
.+.+++++. .+.+.+.++|+.|+|+.=-|--.++.||.-|+|.|.
T Consensus 5 ~~Il~~L~~--~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLAL--RGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHH--SCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 455667755 688999999999999988888889999999999987
No 75
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=68.52 E-value=3 Score=34.85 Aligned_cols=50 Identities=20% Similarity=0.389 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 83 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 83 LglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
|..+-++.+.+++. ++.+...++|+.||+++..+...++-|+.-|+|.+.
T Consensus 7 ld~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 7 LDRVDMQLVKILSE--NSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 44455678888875 467999999999999999999999999999999864
No 76
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=68.22 E-value=3.8 Score=37.37 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=40.0
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccC-CeE
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK-NRI 139 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK-N~i 139 (403)
.++++... ++.+.+.++|+.+++.|=-+|-+++.|+..|+|++... ..|
T Consensus 11 iL~~l~~~-~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~~Y 60 (241)
T 2xrn_A 11 IMRALGSH-PHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGPAGGF 60 (241)
T ss_dssp HHHHHHTC-TTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGGGCEE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCeE
Confidence 45555443 34689999999999999999999999999999999754 444
No 77
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=68.13 E-value=2 Score=36.20 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=46.8
Q ss_pred CCCCcCcHHHHHHHHH-HHHhhCCCCcccHHHHHHHh-ccceeehhhhHHHhhhccchhhcc
Q 015627 76 SCRYDSSLGLLTKKFI-NLIKHAEDGILDLNKAAETL-EVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 76 ~~R~dkSLglLTkKFI-~Ll~~ap~g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.|.....|..+..++- .+|..-..+.+...++++.| ++.+..+...++.||.-|||+|..
T Consensus 22 ~c~~~~~l~~l~~~w~l~IL~~L~~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~ 83 (131)
T 1yyv_A 22 QCPSREVLKHVTSRWGVLILVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVS 83 (131)
T ss_dssp TCTHHHHHHHHHSHHHHHHHHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHcCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEe
Confidence 4666777888886642 12221125779999999999 799999999999999999999874
No 78
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=67.77 E-value=2.7 Score=34.01 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=37.1
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.+.++... +.+.+.++|+.|++.+-.+.-+++-||.-|+|+|..
T Consensus 42 iL~~l~~~--~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 42 VLEGIEAN--EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp HHHHHHHH--SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHc--CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccC
Confidence 34444433 678999999999999999999999999999999873
No 79
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=67.76 E-value=3.4 Score=31.96 Aligned_cols=39 Identities=10% Similarity=0.226 Sum_probs=34.3
Q ss_pred CCcccHHHH----HHHhccceeehhhhHHHhhhccchhhccCC
Q 015627 99 DGILDLNKA----AETLEVQKRRIYDITNVLEGIGLIEKKLKN 137 (403)
Q Consensus 99 ~g~ldLn~a----A~~L~VqKRRIYDItNVLEgIGLIeK~sKN 137 (403)
.+.+...++ |+.|++.+-.++-+++-||.-|+|+|....
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~ 62 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQER 62 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 456888888 999999999999999999999999987433
No 80
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=67.68 E-value=2.9 Score=34.20 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=32.2
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
+.+...++|+.|++.|=.+.-+++-||.-|||+|..
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeC
Confidence 348999999999999999999999999999999863
No 81
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=67.66 E-value=2.1 Score=34.25 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=33.6
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
+.+...++|+.|++.+-.++.+++-||.-|+|++..
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 459999999999999999999999999999999874
No 82
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=67.58 E-value=2.6 Score=33.00 Aligned_cols=45 Identities=11% Similarity=0.277 Sum_probs=37.5
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCC
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 137 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 137 (403)
.+.++.+ +.+...++|+.|++.+-.++-.+..|+.-|||++....
T Consensus 28 Il~~L~~---~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (102)
T 3pqk_A 28 LVCTLVE---GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNI 72 (102)
T ss_dssp HHHHHHT---CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSS
T ss_pred HHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4445533 55899999999999999999999999999999876443
No 83
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=67.21 E-value=3.1 Score=33.09 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=33.1
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
+.+...++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 51 ~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 36899999999999999999999999999999986
No 84
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=67.14 E-value=4.4 Score=33.64 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=33.8
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
+.+...++|+.|++.+=.+.-+++-||.-|||+|..
T Consensus 66 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 578999999999999999999999999999999873
No 85
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=67.04 E-value=4 Score=32.36 Aligned_cols=43 Identities=12% Similarity=0.275 Sum_probs=36.8
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
++.++.. .+.+.+.++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 38 iL~~l~~--~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 38 VIQVLAK--SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHH--SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH--cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeec
Confidence 4444544 346999999999999999999999999999999986
No 86
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=67.02 E-value=4.5 Score=31.84 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhc
Q 015627 86 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGI 128 (403)
Q Consensus 86 LTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgI 128 (403)
+..+.++++.......++|.++|+.+++.+|.|.-+..-.-|+
T Consensus 3 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~G~ 45 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSRGY 45 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHHhCc
Confidence 4577888888888888999999999999999998887654433
No 87
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=67.01 E-value=3.5 Score=33.89 Aligned_cols=37 Identities=11% Similarity=0.068 Sum_probs=33.1
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 99 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 99 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.+.+...++|+.|++.+-.++-+++-||.-|||+|..
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeec
Confidence 4578999999999999999999999999999999863
No 88
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=66.78 E-value=3.6 Score=34.97 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 83 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 83 LglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
|...-++.+.+++. ++.+...++|+.||+++..++..++-||.-|+|.+.
T Consensus 8 ld~~~~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 8 LDKTDIKILQVLQE--NGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeee
Confidence 44555778888866 456899999999999999999999999999999864
No 89
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=66.62 E-value=5 Score=32.44 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=33.1
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
+.+...++|+.|++.+-.++-+++.||.-|+|++.
T Consensus 55 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 55 GDLTVGELSNKMYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 46899999999999999999999999999999986
No 90
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=66.44 E-value=4.7 Score=36.79 Aligned_cols=44 Identities=23% Similarity=0.412 Sum_probs=37.8
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
.++++... ++.+.+.++|+.|++.|=-+|-+++.|+..|+|++.
T Consensus 13 iL~~l~~~-~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 13 ILDFIVKN-PGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp HHHHHHHC-SSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC
Confidence 45555543 346999999999999999999999999999999987
No 91
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=66.31 E-value=4 Score=33.07 Aligned_cols=46 Identities=11% Similarity=0.240 Sum_probs=39.3
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 88 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 88 kKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.+.+++++. .|.+.+.++|+.|+|+.=-|--.++.||.-|+|.|..
T Consensus 5 ~~Il~~L~~--~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLAL--QGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHH--SCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 355666755 5889999999999999888888899999999999984
No 92
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=66.16 E-value=4.5 Score=32.68 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=32.9
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.+.++... +.+...++|+.|++.+=.+.-+++-||.-|||+|..
T Consensus 42 vL~~l~~~--~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 42 VLKLIDEQ--RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp HHHHHHHT--TTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeecc
Confidence 44444443 468999999999999999999999999999999873
No 93
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=66.01 E-value=3.1 Score=33.18 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=33.4
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
+.+.+.++|+.|++.+-.++-+++-||.-|+|++..
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 348999999999999999999999999999999873
No 94
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=65.44 E-value=3.8 Score=34.38 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 83 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 83 LglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
|..+-++.+.+++.. +.+...++|+.||+++..+...++-|+.-|+|.+.
T Consensus 6 ld~~d~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 6 IDNLDRGILEALMGN--ARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp CCHHHHHHHHHHHHC--TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceE
Confidence 334456788888764 67999999999999999999999999999999974
No 95
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=65.43 E-value=5.2 Score=32.95 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=33.7
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 99 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 99 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
.+.+.+.++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 456899999999999999999999999999999986
No 96
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=65.30 E-value=4.9 Score=32.93 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=33.8
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 99 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 99 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
.+.+.+.++|+.|++.+-.+.-+++-||.-|||+|.
T Consensus 60 ~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 60 PDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp TTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC
T ss_pred CCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 456999999999999999999999999999999986
No 97
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=65.20 E-value=2.6 Score=34.38 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=36.9
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccC
Q 015627 89 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 136 (403)
Q Consensus 89 KFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 136 (403)
+.+.++.. +.+...++|+.|++.+..++-.++.|+..|||++...
T Consensus 25 ~IL~~L~~---~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 69 (118)
T 2jsc_A 25 RILVALLD---GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYE 69 (118)
T ss_dssp HHHHHHHT---TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEEC
T ss_pred HHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEE
Confidence 35555543 4478889999999999999999999999999987643
No 98
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=65.02 E-value=3.9 Score=30.88 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=38.8
Q ss_pred HHHHHHHHhhCCCCcccHHHHHHHhc----cceeehhhhHHHhhhccchhhcc
Q 015627 87 TKKFINLIKHAEDGILDLNKAAETLE----VQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 87 TkKFI~Ll~~ap~g~ldLn~aA~~L~----VqKRRIYDItNVLEgIGLIeK~s 135 (403)
=..++.++.. .+.+...++++.|+ +.+--+|-+++.|+.-|+|+|..
T Consensus 11 e~~vL~~L~~--~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 11 ELEVMKVIWK--HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHT--SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHc--CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 3456666655 56799999999998 46778999999999999999875
No 99
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=64.94 E-value=7.8 Score=31.57 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=33.9
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 98 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 98 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
..+.+...++|+.|++.|=.+.-+++-||.-|+|++.
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 84 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLE 84 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 4567999999999999999999999999999999984
No 100
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=64.93 E-value=4.6 Score=33.97 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=33.0
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
+.+.+.++|+.|++.+-.++-+++-||.-|||+|.
T Consensus 58 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 58 GPINLATLATLLGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp CSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 46899999999999999999999999999999986
No 101
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=64.78 E-value=3.9 Score=37.91 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=38.6
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEEEe
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 142 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 142 (403)
+.+++.++|+.+++..|+++-+..+|.++|++++...+.|.=.
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~~~~y~~t 82 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYANT 82 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecCCCeEecC
Confidence 6799999999999999999999999999999998876766653
No 102
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=64.78 E-value=3.4 Score=33.44 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=36.4
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.+.++...++ ...++|+.|++.+=.+.-+++-||.-|+|+|..
T Consensus 42 iL~~l~~~~~---~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~ 84 (144)
T 3f3x_A 42 ILKATSEEPR---SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIR 84 (144)
T ss_dssp HHHHHHHSCE---EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCCC---CHHHHHHHHCCChhHHHHHHHHHHHCCCEEecc
Confidence 4445555443 999999999999999999999999999999873
No 103
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=64.31 E-value=4.2 Score=33.17 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=36.0
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhh
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEK 133 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 133 (403)
.+.++... +.+...++|+.|++.+-.+.-+++-||.-|+|+|
T Consensus 46 iL~~l~~~--~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 46 MINVIYST--PGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHS--TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 34444443 4599999999999999999999999999999998
No 104
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=63.42 E-value=4.7 Score=33.71 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 83 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 83 LglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
|...-.+.+.+++. ++.+...++|+.||+.+..++..++-||.-|+|.+.
T Consensus 5 ld~~~~~iL~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 5 LDDIDRILVRELAA--DGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 33445677888865 467999999999999999999999999999999753
No 105
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=63.15 E-value=5.3 Score=36.82 Aligned_cols=41 Identities=7% Similarity=0.139 Sum_probs=36.4
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeE
Q 015627 99 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRI 139 (403)
Q Consensus 99 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i 139 (403)
++.+.+.++|+.|++.|--+|-+++.|+..|+|++.....|
T Consensus 36 ~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~~~Y 76 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRADGSY 76 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTSCE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCeE
Confidence 45799999999999999999999999999999999754433
No 106
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=63.13 E-value=4.8 Score=33.74 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 83 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 83 LglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
|..+-++.+.+++.. +.+...++|+.||+++..+...++-|+.-|+|.+.
T Consensus 5 ld~~~~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 5 LDEIDKKIIKILQND--GKAPLREISKITGLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp CCHHHHHHHHHHHHC--TTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred cCHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 344556788888763 67999999999999999999999999999999863
No 107
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=63.05 E-value=6.4 Score=30.66 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhCCCC-cccHHHHHHHhccceeehhhhHHHhhhc
Q 015627 86 LTKKFINLIKHAEDG-ILDLNKAAETLEVQKRRIYDITNVLEGI 128 (403)
Q Consensus 86 LTkKFI~Ll~~ap~g-~ldLn~aA~~L~VqKRRIYDItNVLEgI 128 (403)
+..++++++.+.... .+++.++|+.+++.+|.|+-+..-.-|+
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g~ 46 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGI 46 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCc
Confidence 457788888777655 8999999999999999998877654433
No 108
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=62.79 E-value=5.6 Score=37.11 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccC
Q 015627 85 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 136 (403)
Q Consensus 85 lLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 136 (403)
....+.+.++... +.+.+.++|+.|++.|-.++-+++.|+.-|+|++..+
T Consensus 152 ~~~~~IL~~L~~~--~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~~r 201 (244)
T 2wte_A 152 REEMKLLNVLYET--KGTGITELAKMLDKSEKTLINKIAELKKFGILTQKGK 201 (244)
T ss_dssp HHHHHHHHHHHHH--TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 3445566666543 4589999999999999999999999999999999743
No 109
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=62.49 E-value=3.8 Score=33.55 Aligned_cols=38 Identities=13% Similarity=0.330 Sum_probs=34.7
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 98 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 98 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
..+.+...++|+.|++.+-.++-+++-||.-|+|+|..
T Consensus 54 ~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 54 DNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp SCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 34679999999999999999999999999999999863
No 110
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=62.35 E-value=6.2 Score=31.74 Aligned_cols=47 Identities=19% Similarity=0.114 Sum_probs=41.7
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 88 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 88 kKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
..++.++.++.+.-++..++|+++++.+.-+-=|+.-||.-|||.+.
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 56777788777777999999999999999999999999999999943
No 111
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=61.99 E-value=4.8 Score=33.22 Aligned_cols=45 Identities=13% Similarity=0.257 Sum_probs=37.2
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCC
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 137 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 137 (403)
.+.++. .+.+.+.++|+.|++.+-.++-.++.||..|+|.+...+
T Consensus 51 IL~~L~---~~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~g 95 (122)
T 1r1t_A 51 LLSLLA---RSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQG 95 (122)
T ss_dssp HHHHHT---TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 344443 356899999999999999999999999999999876433
No 112
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=61.86 E-value=4.7 Score=33.02 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=33.1
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 99 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 99 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
.+.+...++|+.|++.+-.+.-+++-||.-|||+|.
T Consensus 53 ~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 88 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRE 88 (149)
T ss_dssp SSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC-
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeC
Confidence 366899999999999999999999999999999987
No 113
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=61.59 E-value=5.3 Score=32.67 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhh
Q 015627 85 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEG 127 (403)
Q Consensus 85 lLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEg 127 (403)
.+..++++++.+.....++|.++|+.+++.+|.|.-+..-.-|
T Consensus 11 ~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~G 53 (129)
T 1bl0_A 11 ITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETG 53 (129)
T ss_dssp HHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 4678899999998888899999999999999999887754433
No 114
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=61.24 E-value=3.1 Score=38.52 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=37.6
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhccchhhccC-CeEE
Q 015627 99 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK-NRIR 140 (403)
Q Consensus 99 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK-N~i~ 140 (403)
++.+.+.++|+.||+.|=-+|-+++.|+..|+|++... ..|+
T Consensus 19 ~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~~~~Y~ 61 (260)
T 3r4k_A 19 RLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEGARSYR 61 (260)
T ss_dssp BSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSSSSEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEE
Confidence 47899999999999999999999999999999999865 4553
No 115
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=60.87 E-value=6.2 Score=33.54 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=33.1
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 101 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 101 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.+...++|+.|++.+-.++-+++-||.-|||+|..
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 120 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERRE 120 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecC
Confidence 58999999999999999999999999999999873
No 116
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=60.70 E-value=9.2 Score=31.73 Aligned_cols=45 Identities=24% Similarity=0.269 Sum_probs=36.8
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccC
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 136 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 136 (403)
++.++... +.+...++|+.|+|.+=.+-.+++.||.-|||++...
T Consensus 45 i~~~l~~~--~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~ 89 (155)
T 2h09_A 45 ISDLIREV--GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPW 89 (155)
T ss_dssp HHHHHHHH--SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred HHHHHHhC--CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 33444432 4578899999999999999999999999999998743
No 117
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=60.64 E-value=26 Score=28.98 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=40.1
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 86 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 86 LTkKFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
+...+...+.. .|+..+ ...++|+.|+|+|=-+-.....|+.-|||+...
T Consensus 19 I~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~ 72 (134)
T 4ham_A 19 IVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVK 72 (134)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEc
Confidence 44455555543 466667 899999999999999999999999999998764
No 118
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=60.49 E-value=3.8 Score=38.20 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=43.3
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEEEe
Q 015627 89 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 142 (403)
Q Consensus 89 KFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 142 (403)
+..+.+. ++.+++.++|+++++..|.++-+..+|.++|++++..+..|.-.
T Consensus 29 glf~~l~---~g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~~~~y~~t 79 (332)
T 3i53_A 29 RVADHIA---AGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGLT 79 (332)
T ss_dssp THHHHHH---TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEEC
T ss_pred ChHHHHh---cCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecCCCeEEcC
Confidence 3555554 36899999999999999999999999999999999877777653
No 119
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=60.09 E-value=5.7 Score=34.61 Aligned_cols=50 Identities=26% Similarity=0.362 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 83 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 83 LglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
|..+-++.+.+++. ++.+...++|+.||+++-.+...++-||.-|+|.+.
T Consensus 15 ld~~d~~IL~~L~~--~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 15 LDDLDRNILRLLKK--DARLTISELSEQLKKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 45566788888876 457999999999999999999999999999999864
No 120
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=60.08 E-value=4 Score=37.50 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=36.3
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEE
Q 015627 99 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 140 (403)
Q Consensus 99 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 140 (403)
++.+.+.++|+.|++.|=-+|-+++.|+..|+|++.. ..|.
T Consensus 27 ~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~~-~~Y~ 67 (257)
T 2g7u_A 27 RPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSG-GRWS 67 (257)
T ss_dssp CSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCC-CEEE
Confidence 4679999999999999999999999999999999974 4443
No 121
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=59.46 E-value=7.5 Score=32.99 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=37.8
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
.+-+|...+++.+.+.++|+.+++.++-+..|+..|...|||+..
T Consensus 19 ~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~ 63 (149)
T 1ylf_A 19 ILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVN 63 (149)
T ss_dssp HHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEc
Confidence 333443346678999999999999999999999999999999854
No 122
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=59.34 E-value=6 Score=32.85 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=39.3
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 88 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 88 kKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
.+.+.+++. ++.+...++|+.||+.+-.+...++-|+.-|+|.+.
T Consensus 6 ~~il~~L~~--~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 6 LRILKILQY--NAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHTT--CTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 466777754 557999999999999999999999999999999973
No 123
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=59.12 E-value=9.2 Score=30.03 Aligned_cols=41 Identities=10% Similarity=0.095 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhCCC-CcccHHHHHHHhccceeehhhhHHHhh
Q 015627 86 LTKKFINLIKHAED-GILDLNKAAETLEVQKRRIYDITNVLE 126 (403)
Q Consensus 86 LTkKFI~Ll~~ap~-g~ldLn~aA~~L~VqKRRIYDItNVLE 126 (403)
...+.++++.+... ..++|.++|+.+++++|.|.-+..-.-
T Consensus 4 ~i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 45 (107)
T 2k9s_A 4 RVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQL 45 (107)
T ss_dssp HHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45678888888887 899999999999999999988775443
No 124
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=57.91 E-value=12 Score=29.37 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhccchhhccCC
Q 015627 84 GLLTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 137 (403)
Q Consensus 84 glLTkKFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 137 (403)
..+...+...+.. .++..+ ...++|+.|+|++=-+...++.|+.-|||++....
T Consensus 14 ~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~g~ 71 (102)
T 1v4r_A 14 ADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGAL 71 (102)
T ss_dssp HHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTT
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 4455555555443 356667 99999999999999999999999999999887543
No 125
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=57.88 E-value=6.1 Score=32.95 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=33.1
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhccchhhccC
Q 015627 101 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 136 (403)
Q Consensus 101 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 136 (403)
-++..++|+.+++.++.+..+++-||.-|+|++...
T Consensus 51 ~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 51 FPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp SCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 379999999999999999999999999999999744
No 126
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=57.81 E-value=9.1 Score=33.40 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=39.6
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 88 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 88 kKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
-+.+.+|...++..+...++|+.+++.+.-+.-|+..|..-|||+-.
T Consensus 15 lr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 15 VHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp HHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 34455555556778999999999999999999999999999999754
No 127
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=56.49 E-value=16 Score=31.42 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=23.0
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhccchhh--ccCCeEEE
Q 015627 101 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEK--KLKNRIRW 141 (403)
Q Consensus 101 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK--~sKN~i~W 141 (403)
.+.+.++|+.+||+.+.|- -.|-.|||.- ...|.++.
T Consensus 4 ~~tI~evA~~~Gvs~~tLR----~ye~~GLl~p~~r~~~g~R~ 42 (146)
T 3hh0_A 4 AWLISEFASVGDVTVRALR----YYDKINLLKPSDYTEGGHRL 42 (146)
T ss_dssp CBCHHHHHHHHTCCHHHHH----HHHHTTSSCCSEECTTSCEE
T ss_pred CCcHHHHHHHHCcCHHHHH----HHHHCCCCCCCeECCCCCEe
Confidence 4678889999998877332 1255677742 33455554
No 128
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=56.48 E-value=5 Score=37.89 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=38.5
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEEEe
Q 015627 98 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 142 (403)
Q Consensus 98 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 142 (403)
.++.+++.++|+++++..|.++-+..+|.++|++++ ..+.|.=.
T Consensus 52 ~~g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~-~~~~y~~t 95 (348)
T 3lst_A 52 VDGPRTPAELAAATGTDADALRRVLRLLAVRDVVRE-SDGRFALT 95 (348)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEEC
T ss_pred hCCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEe-cCCEEecC
Confidence 457899999999999999999999999999999999 56665543
No 129
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=56.22 E-value=4.7 Score=37.11 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=36.9
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEEE
Q 015627 99 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRW 141 (403)
Q Consensus 99 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W 141 (403)
++.+++.++|+++++..|+++.+..+|.+.|++++. .+.|.=
T Consensus 37 ~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~-~~~y~~ 78 (335)
T 2r3s_A 37 QGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQ-AEGYRL 78 (335)
T ss_dssp TSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEE
T ss_pred cCCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEec-CCEEec
Confidence 378999999999999999999999999999999873 455554
No 130
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=56.09 E-value=19 Score=29.99 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=29.3
Q ss_pred eEEEeccCCCCCCC-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015627 138 RIRWKGLDNSIPGE-------VDADASILQADIDNLSMEELRVDEQTRELRERLREL 187 (403)
Q Consensus 138 ~i~W~G~~~s~~~~-------~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~L 187 (403)
-|.|.|.+..--.. +..++..|+..++.|......+-+.|..+.+.|+++
T Consensus 72 V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 72 VIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899965431111 233455556666666666666666666666666655
No 131
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=55.97 E-value=3.6 Score=33.63 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=34.0
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 99 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 99 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.+.+...++|+.|++.+-.+.-+++-||.-|+|++..
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecC
Confidence 3568999999999999999999999999999999873
No 132
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=55.75 E-value=7.4 Score=33.16 Aligned_cols=59 Identities=17% Similarity=0.212 Sum_probs=46.3
Q ss_pred CCCCcCcHHHHHHH--HHHHHhhCCCCcccHHHHHHHh-ccceeehhhhHHHhhhccchhhcc
Q 015627 76 SCRYDSSLGLLTKK--FINLIKHAEDGILDLNKAAETL-EVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 76 ~~R~dkSLglLTkK--FI~Ll~~ap~g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.|-....|..|..| ++-|..-. .|....+++++.| ++.++.+...+..||.-|||+|..
T Consensus 13 ~Cpi~~~l~~lg~kW~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~ 74 (131)
T 4a5n_A 13 GSPVEFTLDVIGGKWKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREV 74 (131)
T ss_dssp CCHHHHHHHHHCSSSHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcHHHHHHHHcCcCHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEe
Confidence 45566677777654 22222222 6889999999999 999999999999999999999984
No 133
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=55.14 E-value=22 Score=29.44 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=41.1
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhccchhhccCC
Q 015627 86 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 137 (403)
Q Consensus 86 LTkKFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 137 (403)
+...+...+.. .++..+ ...++|+.|+|+|--+-..++.|+.-|||++....
T Consensus 16 i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~ 71 (126)
T 3by6_A 16 LVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGK 71 (126)
T ss_dssp HHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 33444444443 356677 99999999999999999999999999999987544
No 134
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=54.98 E-value=28 Score=31.56 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=28.3
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchh--hc-cCCeEEEecc
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIE--KK-LKNRIRWKGL 144 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe--K~-sKN~i~W~G~ 144 (403)
..+.+.++|+.+||++|.|- -.|.+||+. +. ..|.|+.-..
T Consensus 4 ~~~~i~e~a~~~gvs~~tlr----~y~~~gll~p~~~d~~~g~R~y~~ 47 (278)
T 1r8e_A 4 SYYSIGEVSKLANVSIKALR----YYDKIDLFKPAYVDPDTSYRYYTD 47 (278)
T ss_dssp CEEEHHHHHHHHTCCHHHHH----HHHHTTSSCCSEECTTTCCEEEET
T ss_pred CcEeHHHHHHHHCcCHHHHH----HHHHCCCCCCCccCCCCCccccCH
Confidence 35788999999999988662 225678874 33 4677776543
No 135
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=54.86 E-value=8.2 Score=33.63 Aligned_cols=50 Identities=24% Similarity=0.361 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 83 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 83 LglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
|..+-++++.+|+. ++.+...++|+.||+++..+...++-|+.-|+|.+.
T Consensus 25 ld~~d~~IL~~L~~--~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 25 LDEIDKKIIKILQN--DGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 55666788988876 467999999999999999999999999999999863
No 136
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=54.68 E-value=5 Score=38.34 Aligned_cols=44 Identities=11% Similarity=0.220 Sum_probs=39.1
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCe-EEE
Q 015627 98 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNR-IRW 141 (403)
Q Consensus 98 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~-i~W 141 (403)
+++.+++.++|+++++..|.++-+..+|.++|++++...+. |.-
T Consensus 68 ~~g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~~~~~y~~ 112 (369)
T 3gwz_A 68 QEGPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDDLFAQ 112 (369)
T ss_dssp TTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECSSTTEEEC
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeCCCceEec
Confidence 46789999999999999999999999999999999976666 544
No 137
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=53.88 E-value=3.6 Score=32.83 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=32.8
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
+.+...++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEec
Confidence 45789999999999999999999999999999986
No 138
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=53.74 E-value=20 Score=33.34 Aligned_cols=42 Identities=7% Similarity=0.151 Sum_probs=36.2
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhh
Q 015627 89 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEK 133 (403)
Q Consensus 89 KFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 133 (403)
+.+.++.. +.+...++|+.|++.+--++-.+++|+.-|||+.
T Consensus 16 ~IL~~L~~---g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 16 DLLSHLTC---MECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHHHTT---TTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 45566653 5688889999999999999999999999999997
No 139
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=53.07 E-value=12 Score=29.73 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc--cCCeEEEe
Q 015627 86 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK--LKNRIRWK 142 (403)
Q Consensus 86 LTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~--sKN~i~W~ 142 (403)
|-+.||++++. ..++.|.++|..+++..--.-+=++-||.-|.|.=. .+.+|-++
T Consensus 8 ll~~Fi~yIk~--~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyI 64 (72)
T 1wi9_A 8 FLTEFINYIKK--SKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYI 64 (72)
T ss_dssp HHHHHHHHHHH--CSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEEC
T ss_pred HHHHHHHHHHH--cCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEe
Confidence 34899999988 468999999999999766666777778887776643 23444444
No 140
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=52.87 E-value=40 Score=28.05 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=31.7
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 101 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 101 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.+...++|+.|++.|=.+--+++-||.-|||+|..
T Consensus 46 ~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~ 80 (151)
T 4aik_A 46 EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHT 80 (151)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeec
Confidence 45678999999999999999999999999999873
No 141
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=51.94 E-value=17 Score=32.20 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=42.7
Q ss_pred cCcHHHHH-HHHHHHHhh---CCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccC
Q 015627 80 DSSLGLLT-KKFINLIKH---AEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 136 (403)
Q Consensus 80 dkSLglLT-kKFI~Ll~~---ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 136 (403)
..+|.... ....+.+.. .|+..+.-.++|+.|||+|=-+=+.+..|+.-|||+....
T Consensus 14 ~~~~~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~ 74 (222)
T 3ihu_A 14 DGSASDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRH 74 (222)
T ss_dssp --CHHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECST
T ss_pred cCcHHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 34454443 334444433 4778899999999999999999999999999999996643
No 142
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=51.82 E-value=39 Score=27.13 Aligned_cols=55 Identities=24% Similarity=0.345 Sum_probs=42.5
Q ss_pred CcCcHHHHHHH----HHHHHhhCCCCccc--HHHHHHHh-ccceeehhhhHHHhhhccchhhccC
Q 015627 79 YDSSLGLLTKK----FINLIKHAEDGILD--LNKAAETL-EVQKRRIYDITNVLEGIGLIEKKLK 136 (403)
Q Consensus 79 ~dkSLglLTkK----FI~Ll~~ap~g~ld--Ln~aA~~L-~VqKRRIYDItNVLEgIGLIeK~sK 136 (403)
....|..|..+ .+.++. .|... ..++++.| ++.+..+...+..||.-|||+|...
T Consensus 17 ~~~~l~~l~~~wrl~IL~~L~---~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 17 SESVLHLLGKKYTMLIISVLG---NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp TSSTHHHHHSTTHHHHHHHHT---SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHcCccHHHHHHHHh---cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 34567777644 222332 45555 99999999 9999999999999999999999754
No 143
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=51.71 E-value=6.4 Score=37.00 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=39.9
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCC--eEEE
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN--RIRW 141 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN--~i~W 141 (403)
.++++. ++.+.+.++|+.+++..++++-+..+|..+|++++...+ .|.-
T Consensus 41 i~~~l~---~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~~~~~~y~~ 91 (374)
T 1qzz_A 41 LVDHLL---AGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRP 91 (374)
T ss_dssp HHHHHH---TTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCCEE
T ss_pred hHHHHh---CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeCCCCeEEEE
Confidence 455553 367999999999999999999999999999999986555 5544
No 144
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=51.53 E-value=9.2 Score=36.56 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=41.3
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc-cCCeEEEe
Q 015627 88 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK-LKNRIRWK 142 (403)
Q Consensus 88 kKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~-sKN~i~W~ 142 (403)
.+.+.+++ .++.+...++|+.|+|+++-|+--++.|+..|++... ...-|+..
T Consensus 8 ~~Il~~L~--~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i~~~~g~GY~l~ 61 (321)
T 1bia_A 8 LKLIALLA--NGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSLP 61 (321)
T ss_dssp HHHHHHHT--TSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTTEEECS
T ss_pred HHHHHHHH--cCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEecCCCcEEe
Confidence 45667774 5678999999999999999999999999999998533 22245443
No 145
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=51.45 E-value=11 Score=34.71 Aligned_cols=44 Identities=9% Similarity=0.067 Sum_probs=37.7
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEEEecc
Q 015627 99 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGL 144 (403)
Q Consensus 99 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~G~ 144 (403)
.+.+.+.++|+.|++.|--+|-+++.|+..|+|++.. ..|. .|.
T Consensus 34 ~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~~-~~Y~-Lg~ 77 (265)
T 2ia2_A 34 NQRRTLSDVARATDLTRATARRFLLTLVELGYVATDG-SAFW-LTP 77 (265)
T ss_dssp CSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEESS-SEEE-ECG
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-CEEE-EcH
Confidence 4679999999999999999999999999999999973 4554 343
No 146
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=51.08 E-value=8.4 Score=30.43 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=33.5
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 98 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 98 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
++..+...++|+.|||.+=-+...++.|+.-|+|++.
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3435899999999999999999999999999999876
No 147
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=50.76 E-value=3.2 Score=33.49 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=33.6
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
+.+...++|+.|++.+-.++-+++-||.-|+|++..
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCB
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEecc
Confidence 478999999999999999999999999999999863
No 148
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=50.28 E-value=11 Score=31.60 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=29.3
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 99 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 99 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
++.+...++|+.|++.|=.+--+++-||.-|||.+.
T Consensus 50 ~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~~ 85 (148)
T 4fx0_A 50 GIDLTMSELAARIGVERTTLTRNLEVMRRDGLVRVM 85 (148)
T ss_dssp ----CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC--
T ss_pred CCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 467999999999999999999999999999999554
No 149
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=50.17 E-value=19 Score=30.11 Aligned_cols=50 Identities=16% Similarity=0.076 Sum_probs=39.9
Q ss_pred HHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhccchhhccCC
Q 015627 88 KKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 137 (403)
Q Consensus 88 kKFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 137 (403)
..+...+.. .++..+ ...++|+.|+|+|--+-..++.|+.-|||++....
T Consensus 11 ~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g~ 64 (129)
T 2ek5_A 11 SLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRGI 64 (129)
T ss_dssp HHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTT
T ss_pred HHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCC
Confidence 344444433 366677 89999999999999999999999999999987443
No 150
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=50.08 E-value=8.4 Score=37.58 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=38.9
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
++.+|.+.+++.+.+.++|+.|++.+=++=-+++-||.-|||+|.
T Consensus 409 vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~ 453 (487)
T 1hsj_A 409 ILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKK 453 (487)
T ss_dssp HHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCE
T ss_pred HHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 344444555588999999999999999999999999999999997
No 151
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=49.94 E-value=20 Score=28.37 Aligned_cols=56 Identities=13% Similarity=0.133 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhcccee-ehhhhHHHhhhccchhhccCCeEEEe
Q 015627 85 LLTKKFINLIKHAEDGILDLNKAAETLEVQKR-RIYDITNVLEGIGLIEKKLKNRIRWK 142 (403)
Q Consensus 85 lLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKR-RIYDItNVLEgIGLIeK~sKN~i~W~ 142 (403)
..-.+.+.+|+... .....++|+.|++.+= -+=-..+.||.=|+|++...++-.|.
T Consensus 11 ~~~~~IL~~Lk~~g--~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP~w~ 67 (79)
T 1xmk_A 11 EIKEKICDYLFNVS--DSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPPIWH 67 (79)
T ss_dssp HHHHHHHHHHHHTC--CEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSCEEE
T ss_pred hHHHHHHHHHHHcC--CcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCCCCCCeE
Confidence 45678888888754 5779999999999884 77778889999999998866666774
No 152
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=49.59 E-value=16 Score=29.49 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=41.2
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhccchhhccCC
Q 015627 86 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 137 (403)
Q Consensus 86 LTkKFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 137 (403)
+...+...+.. .++..+ ...++|+.|+|+|--+-..++.|+.-|+|++....
T Consensus 14 i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~~ 69 (113)
T 3tqn_A 14 LRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRGL 69 (113)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 34445555543 456667 89999999999999999999999999999877443
No 153
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=48.83 E-value=11 Score=35.92 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=38.7
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeE
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRI 139 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i 139 (403)
..++|..+ ++.+.+.++|+++++..|.++-+..+|.++|++++. .+.|
T Consensus 40 ifd~L~~~-~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~-~~~y 87 (363)
T 3dp7_A 40 IFQLLSGK-REGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLE-EDRY 87 (363)
T ss_dssp HHHHHHTC-TTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE-TTEE
T ss_pred HHHHHHhc-CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEec-CCEE
Confidence 33444332 478999999999999999999999999999999875 4443
No 154
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=48.83 E-value=13 Score=30.98 Aligned_cols=53 Identities=9% Similarity=0.189 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHh--ccceeehhhhHHHhhhccchhhccCC
Q 015627 83 LGLLTKKFINLIKHAEDGILDLNKAAETL--EVQKRRIYDITNVLEGIGLIEKKLKN 137 (403)
Q Consensus 83 LglLTkKFI~Ll~~ap~g~ldLn~aA~~L--~VqKRRIYDItNVLEgIGLIeK~sKN 137 (403)
+...-++.+.+|+. +|.+...++|+.+ ++++-.+-.-+.+|+.-|||++..+.
T Consensus 11 md~~d~~IL~~L~~--~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~rg 65 (111)
T 3b73_A 11 MTIWDDRILEIIHE--EGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANG 65 (111)
T ss_dssp CCHHHHHHHHHHHH--HSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTT
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecCCc
Confidence 44455788888865 3579999999999 99999999999999999999987544
No 155
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=48.48 E-value=8.1 Score=33.02 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=33.7
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 98 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 98 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
...-.++.++|+.+++..+.|+.+++-|+.=|+|++.
T Consensus 48 g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 48 GSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp TCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3455799999999999999999999999999999985
No 156
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=48.06 E-value=9 Score=30.35 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=38.0
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhc----cceeehhhhHHHhhhccchhhcc
Q 015627 88 KKFINLIKHAEDGILDLNKAAETLE----VQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 88 kKFI~Ll~~ap~g~ldLn~aA~~L~----VqKRRIYDItNVLEgIGLIeK~s 135 (403)
...+.++.. .+.+...++|+.|+ +.+=.+|-+++.||.-|+|+|..
T Consensus 13 ~~vL~~l~~--~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 13 WEVMNIIWM--KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp HHHHHHHHH--HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHh--CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEe
Confidence 345555544 45689999999999 67999999999999999999874
No 157
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=47.99 E-value=25 Score=28.92 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=41.3
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhccchhhccCC
Q 015627 86 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 137 (403)
Q Consensus 86 LTkKFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 137 (403)
+...+...+.. .++..+ ...++|+.|+|+|--+-..+..|+.-|+|++....
T Consensus 18 i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~ 73 (125)
T 3neu_A 18 ISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125)
T ss_dssp HHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCC
Confidence 44555555543 456667 59999999999999999999999999999987543
No 158
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=47.01 E-value=16 Score=32.16 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=36.9
Q ss_pred CCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCC
Q 015627 97 AEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 137 (403)
Q Consensus 97 ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 137 (403)
.|+..+.-.++|+.|||+|=-+=+.+..|+.-|||+.....
T Consensus 31 ~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~ 71 (218)
T 3sxy_A 31 KLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRV 71 (218)
T ss_dssp CTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTT
T ss_pred CCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 47778999999999999999999999999999999976443
No 159
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=46.82 E-value=10 Score=35.73 Aligned_cols=43 Identities=16% Similarity=0.154 Sum_probs=37.5
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEEEe
Q 015627 99 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 142 (403)
Q Consensus 99 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 142 (403)
++.+.+.++|+++++..|+++.+..+|.++|++++.. +.|.-.
T Consensus 62 ~~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~-~~y~~t 104 (359)
T 1x19_A 62 EGPKDLATLAADTGSVPPRLEMLLETLRQMRVINLED-GKWSLT 104 (359)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEEC
T ss_pred CCCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEeeC-CeEecC
Confidence 4789999999999999999999999999999999874 455543
No 160
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=46.64 E-value=8.4 Score=28.56 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.9
Q ss_pred CCCcccHHHHHHHhccceeehhhhHH
Q 015627 98 EDGILDLNKAAETLEVQKRRIYDITN 123 (403)
Q Consensus 98 p~g~ldLn~aA~~L~VqKRRIYDItN 123 (403)
++..+.+.++|+.|||+|..||..++
T Consensus 7 ~~~~l~~~eva~~lgvsrstiy~~~~ 32 (66)
T 1z4h_A 7 PDSLVDLKFIMADTGFGKTFIYDRIK 32 (66)
T ss_dssp SSSEECHHHHHHHHSSCHHHHHHHHH
T ss_pred cccccCHHHHHHHHCcCHHHHHHHHH
Confidence 45689999999999999999999987
No 161
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=46.43 E-value=9.6 Score=35.66 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=41.2
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEEEe
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 142 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 142 (403)
.+++|. ++.+.+.++|+.+++..+.++-+..+|...|++++.....|.-.
T Consensus 44 i~~~l~---~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~~g~y~~t 93 (360)
T 1tw3_A 44 LVDHIL---AGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPT 93 (360)
T ss_dssp HHHHHH---TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred HHHHHh---CCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecCCCeEEeC
Confidence 445553 36689999999999999999999999999999998666666543
No 162
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=46.20 E-value=40 Score=28.84 Aligned_cols=100 Identities=15% Similarity=0.184 Sum_probs=49.0
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc--------------------cCCeEEEeccCCC
Q 015627 88 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK--------------------LKNRIRWKGLDNS 147 (403)
Q Consensus 88 kKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~--------------------sKN~i~W~G~~~s 147 (403)
.+|..+++.-....-.|..--..|..-.-+|=|+..+|+.|..+.+. ..+-+.|.|.+..
T Consensus 12 ~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g~~ 91 (151)
T 2zdi_C 12 EKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYA 91 (151)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCCeE
Confidence 34455554444444444444444433344555666666665555421 1235778885532
Q ss_pred CCCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015627 148 IPGEV-------DADASILQADIDNLSMEELRVDEQTRELRERLREL 187 (403)
Q Consensus 148 ~~~~~-------~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~L 187 (403)
-.... ..++..|+..++.|......+.+.|..+...|+.+
T Consensus 92 vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 92 VERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112 23344455555555555555555555555555554
No 163
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=45.87 E-value=31 Score=27.77 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=23.9
Q ss_pred ccHHHHHHHhccceeehhhhHHHhhhccchh--hccCCeEEEe
Q 015627 102 LDLNKAAETLEVQKRRIYDITNVLEGIGLIE--KKLKNRIRWK 142 (403)
Q Consensus 102 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe--K~sKN~i~W~ 142 (403)
+.+.++|+.+||+.+.|.=. |-.||+. +...|.+++-
T Consensus 2 ~~i~e~A~~~gvs~~tLR~y----e~~Gll~p~~r~~~g~R~Y 40 (108)
T 2vz4_A 2 YSVGQVAGFAGVTVRTLHHY----DDIGLLVPSERSHAGHRRY 40 (108)
T ss_dssp BCHHHHHHHHTCCHHHHHHH----HHHTSSCCSEECSSCCEEB
T ss_pred CCHHHHHHHHCcCHHHHHHH----HHCCCCCCCccCCCCCeec
Confidence 56788999999988766432 4557774 3244555553
No 164
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=45.76 E-value=9.5 Score=33.54 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=33.8
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 98 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 98 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
.+....+.++|+.|++.+--++..++.||.-|+|.+.
T Consensus 21 ~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 21 NGYPPSVREIARRFRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred hCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEec
Confidence 4557899999999999988999999999999999886
No 165
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=44.72 E-value=58 Score=23.88 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015627 154 ADASILQADIDNLSMEELRVDEQTRELRERLRELIE 189 (403)
Q Consensus 154 ~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lte 189 (403)
.++.+|+..--+|+..|+.|+..|..++..|-.|-.
T Consensus 10 kkiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 10 KKIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 457778877778899999999999999999877743
No 166
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=44.67 E-value=14 Score=31.46 Aligned_cols=47 Identities=17% Similarity=0.391 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 86 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 86 LTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
+-++.+.+|+. ++.+...++|+.||++.-.+..-++-|+.-|+|.+.
T Consensus 4 ~d~~il~~L~~--~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQE--DSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTT--CSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHH--CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeec
Confidence 34677888865 677899999999999999999999999999999864
No 167
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=44.53 E-value=33 Score=28.86 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=24.1
Q ss_pred cHHHHHHHhccceeehhhhHHHhhhccchhh--ccCCeEEEe
Q 015627 103 DLNKAAETLEVQKRRIYDITNVLEGIGLIEK--KLKNRIRWK 142 (403)
Q Consensus 103 dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK--~sKN~i~W~ 142 (403)
.+.++|+.+||+.|.|-=. |-.||+.- ...|.|+.-
T Consensus 2 ~I~e~A~~~gvs~~tLR~y----e~~Gll~p~~r~~~g~R~Y 39 (135)
T 1q06_A 2 NISDVAKITGLTSKAIRFY----EEKGLVTPPMRSENGYRTY 39 (135)
T ss_dssp CHHHHHHHHTCCHHHHHHH----HHTTCSCCCEECTTSCEEC
T ss_pred CHHHHHHHHCcCHHHHHHH----HHCCCCCCCccCCCCCeee
Confidence 5778999999988766422 56788753 345666653
No 168
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=44.10 E-value=9.9 Score=29.43 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=31.9
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhccchh
Q 015627 98 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIE 132 (403)
Q Consensus 98 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe 132 (403)
+++.+.+.++|+.|++.|=.++-+++.||.-|+|.
T Consensus 27 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~ 61 (95)
T 2qvo_A 27 GGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVE 61 (95)
T ss_dssp TTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCcc
Confidence 34458999999999999999999999999999993
No 169
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=42.65 E-value=40 Score=26.65 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=29.5
Q ss_pred CcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHH
Q 015627 81 SSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITN 123 (403)
Q Consensus 81 kSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItN 123 (403)
.+|..+-+++|...-..-+| +..+||+.||+.|+.||.-+.
T Consensus 36 ~~l~~~Er~~I~~aL~~~~G--N~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 36 MSADRVRWEHIQRIYEMCDR--NVSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp SCHHHHHHHHHHHHHHHTTS--CHHHHHHHHTSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCC--CHHHHHHHhCCCHHHHHHHHH
Confidence 56777778877654333333 467999999999999997643
No 170
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=42.32 E-value=22 Score=30.08 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=38.0
Q ss_pred HHHHHHHhhCC-CCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 88 KKFINLIKHAE-DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 88 kKFI~Ll~~ap-~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
-+.+.+|-..+ ++.+.+.++|+.+++.++-+..|+..|..-|||+-.
T Consensus 14 l~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~ 61 (143)
T 3t8r_A 14 LTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSV 61 (143)
T ss_dssp HHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEec
Confidence 33444454444 457999999999999999999999999999999843
No 171
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=42.26 E-value=14 Score=34.36 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=37.7
Q ss_pred HHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 91 INLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 91 I~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
+..+...+++.+...++|+.+++.+=.+--+++-||.-|+|+|.
T Consensus 164 L~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~ 207 (250)
T 1p4x_A 164 LAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKE 207 (250)
T ss_dssp HHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEE
T ss_pred HHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 33444445457999999999999999999999999999999997
No 172
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=42.10 E-value=15 Score=32.73 Aligned_cols=44 Identities=25% Similarity=0.474 Sum_probs=38.8
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 88 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 88 kKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
.+.+.++. ++.+...++|+.|++.+-.++-.++.||.-|+|++.
T Consensus 23 ~~IL~~L~---~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 23 RKILKLLR---NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHT---TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45666775 367999999999999999999999999999999987
No 173
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=41.86 E-value=13 Score=35.06 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=40.0
Q ss_pred HHHHHhhCCCCcccHHHHHHHhcc---ceeehhhhHHHhhhccchhhc--cCCeEEEe
Q 015627 90 FINLIKHAEDGILDLNKAAETLEV---QKRRIYDITNVLEGIGLIEKK--LKNRIRWK 142 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~V---qKRRIYDItNVLEgIGLIeK~--sKN~i~W~ 142 (403)
.++.+... ++.+.+.++|+++++ ..|+++.+..+|.++|++++. ..+.|.-.
T Consensus 41 if~~L~~~-~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~t 97 (352)
T 1fp2_A 41 IPNIIQNH-GKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYALT 97 (352)
T ss_dssp HHHHHHHH-TSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEEC
T ss_pred hhhhhhhc-CCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEecCCCCeEeCC
Confidence 34444432 357999999999999 588999999999999999987 34555543
No 174
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=41.68 E-value=85 Score=25.31 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=29.3
Q ss_pred HHHHhhCCCCcccHHHHHHHh---c--cce-eehhhhHHHhhhccchhhc
Q 015627 91 INLIKHAEDGILDLNKAAETL---E--VQK-RRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 91 I~Ll~~ap~g~ldLn~aA~~L---~--VqK-RRIYDItNVLEgIGLIeK~ 134 (403)
+.+|...+.-..+|.+..... . +.. --||-+++-||.-|||++.
T Consensus 19 L~~L~~~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~ 68 (118)
T 2esh_A 19 LLLVAEKPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTE 68 (118)
T ss_dssp HHHHHHSCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEE
T ss_pred HHHHHcCCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEE
Confidence 344555443334443333222 3 888 9999999999999999876
No 175
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=41.59 E-value=19 Score=30.19 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=35.4
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 78 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 78 R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
|.+..=..|...+++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 25 r~~~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~ 67 (215)
T 2qko_A 25 QNPERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASN 67 (215)
T ss_dssp --CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHH
Confidence 3455556788889999988777789999999999999999994
No 176
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=41.26 E-value=9.9 Score=30.81 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=34.5
Q ss_pred CCCcc-cHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 98 EDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 98 p~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
+++.+ ...++|+.|+|++=-+-..+..|+.-|+|++..
T Consensus 39 ~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 39 GNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp TTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 55566 999999999999999999999999999999875
No 177
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=41.16 E-value=17 Score=30.23 Aligned_cols=46 Identities=17% Similarity=0.380 Sum_probs=38.9
Q ss_pred HHHHHhhCCCCcccHHHHHHHh-----ccceeehhhhHHHhhhccchhhcc
Q 015627 90 FINLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.+++|.++.++.++..++.+.| .+.+=-+|-.++.|+..|||.|..
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 5667766554789999999999 788999999999999999999874
No 178
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.73 E-value=56 Score=24.15 Aligned_cols=33 Identities=12% Similarity=0.370 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015627 153 DADASILQADIDNLSMEELRVDEQTRELRERLR 185 (403)
Q Consensus 153 ~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~ 185 (403)
...+..|+.|++.|+.+-..|-+.+.+++.+|.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346889999999999999999998888888775
No 179
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=39.76 E-value=20 Score=29.68 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=39.4
Q ss_pred HHHHHhhCCCCcccHHHHHHHh-----ccceeehhhhHHHhhhccchhhccC
Q 015627 90 FINLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKKLK 136 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~sK 136 (403)
.+++|.++ ++.++..++.+.| ++.+=-+|-.++.|+..|||.|..-
T Consensus 16 Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 16 ISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 56667654 5689999999999 8899999999999999999998753
No 180
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=39.49 E-value=7.9 Score=33.25 Aligned_cols=44 Identities=18% Similarity=0.088 Sum_probs=35.0
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhh
Q 015627 78 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDI 121 (403)
Q Consensus 78 R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDI 121 (403)
|.+..-..|....++++.+..-.-+.+.++|+..||.|.-||--
T Consensus 37 r~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~ 80 (225)
T 2id3_A 37 RTARIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRR 80 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHH
Confidence 34444556777788898887667799999999999999999854
No 181
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=39.08 E-value=23 Score=31.74 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHH
Q 015627 86 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITN 123 (403)
Q Consensus 86 LTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItN 123 (403)
+..+|++++.+.....++|.++|+.+++++|.+..+.-
T Consensus 170 ~~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 170 AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp HHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 57889999999988899999999999999999988763
No 182
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=38.91 E-value=80 Score=23.36 Aligned_cols=38 Identities=32% Similarity=0.410 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 015627 153 DADASILQADIDNLSMEELRVDEQTRELRERLRELIEN 190 (403)
Q Consensus 153 ~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted 190 (403)
..+...|+.++..|..+-.+|-+.++..+++|..|.+.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkee 45 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677899999999999999999999999999888664
No 183
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=37.95 E-value=84 Score=26.75 Aligned_cols=35 Identities=11% Similarity=0.262 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015627 154 ADASILQADIDNLSMEELRVDEQTRELRERLRELI 188 (403)
Q Consensus 154 ~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lt 188 (403)
.++..||+||+.++.+.++|-+.-..-.+.+|+..
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav 38 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKAC 38 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999988888887666666555543
No 184
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=37.59 E-value=19 Score=32.67 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=41.9
Q ss_pred HHHHHHHHHhh---CCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccC
Q 015627 86 LTKKFINLIKH---AEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 136 (403)
Q Consensus 86 LTkKFI~Ll~~---ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 136 (403)
+...+.+.+.. .|+..+...++|+.|||+|=-|-.-++.|+.-|||+....
T Consensus 31 v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~ 84 (237)
T 3c7j_A 31 IEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVETH 84 (237)
T ss_dssp HHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 44555554433 5778899999999999999999999999999999998743
No 185
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=37.06 E-value=79 Score=25.28 Aligned_cols=74 Identities=12% Similarity=0.193 Sum_probs=36.9
Q ss_pred hccceeehhhhHHHhhhccchhhccCCeEEEeccCCCCCC------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015627 111 LEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDNSIPG------EVDADASILQADIDNLSMEELRVDEQTRELRERL 184 (403)
Q Consensus 111 L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~G~~~s~~~------~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L 184 (403)
|..+++++-++.+=|+. +.- ..+.|+=+|.-..... .+..++..+..+++.|..+...+...+..++..|
T Consensus 32 l~~~~~e~~~~~~eL~~---l~~-d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 32 VQLELTEAKKALDEIES---LPD-DAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHT---SCT-TCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc---CCC-CcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544 432 3446766774322110 1223344455555556666666666666666666
Q ss_pred HHhh
Q 015627 185 RELI 188 (403)
Q Consensus 185 ~~Lt 188 (403)
+.+.
T Consensus 108 ~~~~ 111 (117)
T 2zqm_A 108 QSAL 111 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 186
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=36.72 E-value=21 Score=29.44 Aligned_cols=47 Identities=9% Similarity=0.108 Sum_probs=38.6
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhc----cceeehhhhHHHhhhccchhhcc
Q 015627 88 KKFINLIKHAEDGILDLNKAAETLE----VQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 88 kKFI~Ll~~ap~g~ldLn~aA~~L~----VqKRRIYDItNVLEgIGLIeK~s 135 (403)
..++.++... .+.+...++++.|+ +.+=.+|-+++-||.-|+|+|..
T Consensus 12 ~~vL~~L~~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 12 RAVMDHLWSR-TEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHTC-SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHhc-CCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 3456666543 35689999999998 78889999999999999999874
No 187
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=36.69 E-value=66 Score=29.33 Aligned_cols=51 Identities=24% Similarity=0.295 Sum_probs=35.7
Q ss_pred CcCcHHHHHHHHHHHHh-hCCCCc---------------ccHHHHHHHhcc-ceeehhhhHHHhhhccch
Q 015627 79 YDSSLGLLTKKFINLIK-HAEDGI---------------LDLNKAAETLEV-QKRRIYDITNVLEGIGLI 131 (403)
Q Consensus 79 ~dkSLglLTkKFI~Ll~-~ap~g~---------------ldLn~aA~~L~V-qKRRIYDItNVLEgIGLI 131 (403)
++.+...|-+.|..|.+ -+||.. .-||+|=+.|.- .||+.||. -|.|+.+-
T Consensus 55 ~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~--~l~G~~~~ 122 (207)
T 3bvo_A 55 FRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL--KLHGIEIP 122 (207)
T ss_dssp SCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH--HHTTCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH--HhcCCCcc
Confidence 45788999999999864 456542 346777777764 78889997 45565543
No 188
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=36.35 E-value=7.5 Score=30.17 Aligned_cols=40 Identities=10% Similarity=0.063 Sum_probs=29.1
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccc
Q 015627 89 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGL 130 (403)
Q Consensus 89 KFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGL 130 (403)
+.+.++... .-..+.++|..+||.+..||-++.-...-|.
T Consensus 13 ~~v~~~~~~--~g~s~~~ia~~~gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 13 DAVALYENS--DGASLQQIANDLGINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp HHHHHHTTG--GGSCHHHHHHHHTSCHHHHHHHHHHHCCCST
T ss_pred HHHHHHHHc--CCChHHHHHHHHCcCHHHHHHHHHHHhhcCc
Confidence 345555321 1468999999999999999999987765443
No 189
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=35.92 E-value=28 Score=28.53 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeE
Q 015627 82 SLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRI 139 (403)
Q Consensus 82 SLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i 139 (403)
.+..+...+.++++. ++.+++.++-+.||++|+..-=|..-|..+|+..|++-.++
T Consensus 63 ~~~~~~~~l~~~~~~--~~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~TrR~gd~R~ 118 (121)
T 2pjp_A 63 RIVEFANMIRDLDQE--CGSTCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRGNDHL 118 (121)
T ss_dssp HHHHHHHHHHHHHHH--HSSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEETTEEE
T ss_pred HHHHHHHHHHHHHHH--CCCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeEeeCCEee
Confidence 344455556666655 37899999999999999999999999999999988754444
No 190
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=35.74 E-value=14 Score=27.28 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=28.8
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhccchhhccC--CeEEEec
Q 015627 101 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK--NRIRWKG 143 (403)
Q Consensus 101 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK--N~i~W~G 143 (403)
.++..++|+.|||+++.||..+.- |+ -+.+... .++.|.-
T Consensus 2 ~lt~~e~a~~LgvS~~Tl~rw~~~--G~-P~~~~~g~~~~~~y~~ 43 (68)
T 1j9i_A 2 EVNKKQLADIFGASIRTIQNWQEQ--GM-PVLRGGGKGNEVLYDS 43 (68)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHTTT--TC-CCSSCCCSSSCCEEEH
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHC--CC-CeEeeCCCcceEEECH
Confidence 467899999999999999999864 55 3333333 3666653
No 191
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=35.52 E-value=17 Score=29.50 Aligned_cols=44 Identities=7% Similarity=0.072 Sum_probs=35.7
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccc----eeehhhhHHHhhhccchhhcc
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQ----KRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~Vq----KRRIYDItNVLEgIGLIeK~s 135 (403)
++.+|.. .+.+...++++.|+.. +=-+|-+++-||.-|+|+|..
T Consensus 40 VL~~L~~--~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 40 VMRVIWS--LGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp HHHHHHH--HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHh--CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 4555554 3468999999999864 568999999999999999874
No 192
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=35.35 E-value=14 Score=32.83 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=23.2
Q ss_pred CCCcccHHHHHHHhccceeehhhhHH
Q 015627 98 EDGILDLNKAAETLEVQKRRIYDITN 123 (403)
Q Consensus 98 p~g~ldLn~aA~~L~VqKRRIYDItN 123 (403)
.+..+.+.++|+.|+|.+.|+|+.+.
T Consensus 28 ~~~~LTv~EVAe~LgVs~srV~~LIr 53 (148)
T 2kfs_A 28 DEPTYDLPRVAELLGVPVSKVAQQLR 53 (148)
T ss_dssp TSCEEEHHHHHHHHTCCHHHHHHHHH
T ss_pred cCceEcHHHHHHHhCCCHHHHHHHHH
Confidence 34789999999999999999999765
No 193
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=35.25 E-value=51 Score=26.40 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=24.4
Q ss_pred ccHHHHHHHhccceeehhhhHHHhhhccchh--hccCCeEEEe
Q 015627 102 LDLNKAAETLEVQKRRIYDITNVLEGIGLIE--KKLKNRIRWK 142 (403)
Q Consensus 102 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe--K~sKN~i~W~ 142 (403)
+.+.++|+.+||+.+.|--. |..||+. +...|.+++-
T Consensus 3 ~~i~e~A~~~gvs~~tLR~y----e~~Gll~p~~~~~~g~R~Y 41 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHY----DNIELLNPSALTDAGYRLY 41 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHH----HHTTSSCCSEECTTCCEEB
T ss_pred ccHHHHHHHHCcCHHHHHHH----HHCCCCCCCeECCCCCeee
Confidence 57889999999998877433 4467764 2234555543
No 194
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=35.23 E-value=88 Score=23.36 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015627 155 DASILQADIDNLSMEELRVDEQTRELRERLRELI 188 (403)
Q Consensus 155 ~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lt 188 (403)
.+..|+.+++.|..+-..|...|..+++++..|.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888888887777766653
No 195
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=35.23 E-value=20 Score=32.32 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHh
Q 015627 86 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVL 125 (403)
Q Consensus 86 LTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVL 125 (403)
+..++++++.+..+..++|.++|+.+++++|.|.-+..-.
T Consensus 4 ~~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~~~ 43 (292)
T 1d5y_A 4 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDV 43 (292)
T ss_dssp HHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5678999999998999999999999999999998885433
No 196
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=35.15 E-value=16 Score=34.39 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=36.7
Q ss_pred HHHHHhhCCCCcccHHHHHHHhcc---ceeehhhhHHHhhhccchhhc
Q 015627 90 FINLIKHAEDGILDLNKAAETLEV---QKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~V---qKRRIYDItNVLEgIGLIeK~ 134 (403)
.++.|... ++.+.+.++|+++++ ..|+++-+..+|.++|++++.
T Consensus 35 if~~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 35 IADAIHNH-GKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp HHHHHHHH-TSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEE
T ss_pred hHhHHhhc-CCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEe
Confidence 45555443 357999999999999 588999999999999999987
No 197
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=34.42 E-value=27 Score=31.33 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=36.4
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccC
Q 015627 98 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 136 (403)
Q Consensus 98 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 136 (403)
.++.+...++|+.|+|.+-.+-.+++-||.-|||++...
T Consensus 17 ~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 55 (214)
T 3hrs_A 17 RHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK 55 (214)
T ss_dssp SCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred cCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC
Confidence 577899999999999999999999999999999999854
No 198
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=34.39 E-value=25 Score=28.93 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=35.2
Q ss_pred CCCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 77 CRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 77 ~R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
.|.+..=..|...+++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 27 ~~~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~ 70 (218)
T 3dcf_A 27 RTGNDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYY 70 (218)
T ss_dssp ---CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHH
Confidence 33444556788889999988777789999999999999999993
No 199
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=34.33 E-value=14 Score=30.69 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=40.5
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhccchhhccCC
Q 015627 86 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 137 (403)
Q Consensus 86 LTkKFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 137 (403)
+...+...+.. .++..+ ...++|+.|+|+|--+-..+..|+.-|+|++....
T Consensus 16 i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~~ 71 (126)
T 3ic7_A 16 IADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRGI 71 (126)
T ss_dssp HHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEcCC
Confidence 44455555543 456677 89999999999999999999999999999987544
No 200
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=34.01 E-value=26 Score=30.59 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=38.2
Q ss_pred HHHHHHHHhh-CCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 87 TKKFINLIKH-AEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 87 TkKFI~Ll~~-ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
.-+.+-+|-. ..++.+.+.++|+.+++.++-+..|+..|..-|||+-.
T Consensus 29 Alr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~ 77 (159)
T 3lwf_A 29 GLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSI 77 (159)
T ss_dssp HHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 3333444433 34567999999999999999999999999999999854
No 201
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=33.96 E-value=19 Score=30.41 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=34.1
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEE
Q 015627 101 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 140 (403)
Q Consensus 101 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 140 (403)
.+...++|..||++|..+.-+.+-|+.-|+|++. +++|.
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~ 207 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLS-RGKIT 207 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC-CCEEE
Confidence 5678999999999999999999999999999865 55554
No 202
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=33.74 E-value=27 Score=28.52 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015627 156 ASILQADIDNLSMEELRVDEQTRELRERLRE 186 (403)
Q Consensus 156 ~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~ 186 (403)
...|+++++.|+.+...|+..|..+..+|++
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~ 33 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLKN 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3578888888988888888888887776653
No 203
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=33.67 E-value=29 Score=24.43 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=29.4
Q ss_pred HHHHhhCCCCcccHHHHHHHh-----ccceeehhhhHHHhhhccchhhc
Q 015627 91 INLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 91 I~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
+.++.. ++.+...++++.| +|.++-||-.++ .+|+| |.
T Consensus 11 ~~ll~~--~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v-~~ 53 (64)
T 2p5k_A 11 REIITS--NEIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLV-KV 53 (64)
T ss_dssp HHHHHH--SCCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCE-EE
T ss_pred HHHHHc--CCCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCE-EE
Confidence 344443 4679999999999 999999997777 55777 54
No 204
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=33.64 E-value=19 Score=23.73 Aligned_cols=22 Identities=9% Similarity=0.048 Sum_probs=19.9
Q ss_pred ccHHHHHHHhccceeehhhhHH
Q 015627 102 LDLNKAAETLEVQKRRIYDITN 123 (403)
Q Consensus 102 ldLn~aA~~L~VqKRRIYDItN 123 (403)
+.+.++|+.|||.+.-||.+++
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSC
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
Confidence 7899999999999999998754
No 205
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=33.58 E-value=26 Score=30.41 Aligned_cols=46 Identities=11% Similarity=0.102 Sum_probs=35.5
Q ss_pred CCCCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhh
Q 015627 76 SCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDI 121 (403)
Q Consensus 76 ~~R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDI 121 (403)
..|...+=..|....++++....-.-+.+.++|+.+||.|.-||--
T Consensus 20 ~~r~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~~ 65 (211)
T 3fiw_A 20 QGMTKMNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYWY 65 (211)
T ss_dssp ----CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHTT
T ss_pred ccccccCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHH
Confidence 3445556678888899999887666799999999999999999843
No 206
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=33.26 E-value=18 Score=34.37 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=32.0
Q ss_pred cccHHHHHHHhcc------ceeehhhhHHHhhhccchhhc
Q 015627 101 ILDLNKAAETLEV------QKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 101 ~ldLn~aA~~L~V------qKRRIYDItNVLEgIGLIeK~ 134 (403)
.+++.++|+++++ ..|+++.+..+|.++|++++.
T Consensus 62 ~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 101 (372)
T 1fp1_D 62 FMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTST 101 (372)
T ss_dssp CBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEec
Confidence 3999999999999 789999999999999999986
No 207
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=33.20 E-value=21 Score=33.19 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=35.5
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEE
Q 015627 101 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 140 (403)
Q Consensus 101 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 140 (403)
.+++.++|+++++..|.++-+..+|.++|++++.. +.|.
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~-~~y~ 94 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAALGLLTKEG-DAFR 94 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEE
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecC-Ceee
Confidence 89999999999999999999999999999999875 5554
No 208
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=33.18 E-value=35 Score=29.13 Aligned_cols=36 Identities=14% Similarity=0.203 Sum_probs=32.8
Q ss_pred ccHHHHHHHhccceeehhhhHHHhhhccchhhccCC
Q 015627 102 LDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 137 (403)
Q Consensus 102 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 137 (403)
+...++|..||+.|..+.-+.+-|+.-|+|++..+.
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~ 199 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRG 199 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTT
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCCc
Confidence 678999999999999999999999999999887443
No 209
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=32.28 E-value=39 Score=27.83 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=37.4
Q ss_pred CCCCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 76 SCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 76 ~~R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
..|....-..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 12 ~~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 56 (207)
T 2rae_A 12 GRRPSTTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFR 56 (207)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHH
T ss_pred ccchHhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhh
Confidence 344556667788889999988777789999999999999999884
No 210
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=32.02 E-value=21 Score=31.60 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=39.7
Q ss_pred HHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 88 KKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 88 kKFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
..+.+.+.. .|+..+ .-.++|++|||+|=-+-..+..|+.-|||++..
T Consensus 14 ~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~ 65 (239)
T 1hw1_A 14 EYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQH 65 (239)
T ss_dssp HHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEec
Confidence 344444443 467788 799999999999999999999999999999773
No 211
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=32.02 E-value=28 Score=30.41 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=34.6
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEEE
Q 015627 101 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRW 141 (403)
Q Consensus 101 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W 141 (403)
.+...++|..||++|..+.-+.+-|+.-|+|++.. ++|.-
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~-~~i~i 216 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKK-NKIIV 216 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS-SEEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCC-CEEEE
Confidence 46889999999999999999999999999999864 44543
No 212
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=31.98 E-value=22 Score=34.75 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=32.6
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchhhccC
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 136 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 136 (403)
..+.+..+++.++|+++-+.-.++-|+..|+|++..+
T Consensus 310 p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~~ 346 (373)
T 2qc0_A 310 PYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQS 346 (373)
T ss_dssp SEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--
T ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEecC
Confidence 4678889999999999999999999999999998753
No 213
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=31.80 E-value=23 Score=30.81 Aligned_cols=43 Identities=12% Similarity=0.025 Sum_probs=33.9
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 78 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 78 R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
|.+..-..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 20 ~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~ 62 (231)
T 2zcx_A 20 AKQQREEAILDAARELGTERGIREITLTDIAATVGMHKSALLR 62 (231)
T ss_dssp TTHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHH
Confidence 3444445666778888877666689999999999999999984
No 214
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=31.51 E-value=48 Score=27.79 Aligned_cols=47 Identities=11% Similarity=0.244 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 86 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 86 LTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
..-+.+-+|-..++. .+.++|+.+++..+.+..|+.-|.--|||+-.
T Consensus 10 yAl~~L~~La~~~~~--s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~ 56 (145)
T 1xd7_A 10 VAIHILSLISMDEKT--SSEIIADSVNTNPVVVRRMISLLKKADILTSR 56 (145)
T ss_dssp HHHHHHHHHHTCSCC--CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHHhCCCC--CHHHHHHHHCcCHHHHHHHHHHHHHCCceEee
Confidence 333444444444553 99999999999999999999999999999755
No 215
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=31.41 E-value=11 Score=33.44 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=33.6
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
+.+...++|+.|++.+-.+.-+++-||.-|||+|..
T Consensus 61 ~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 458999999999999999999999999999999873
No 216
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=31.40 E-value=24 Score=22.59 Aligned_cols=26 Identities=8% Similarity=0.045 Sum_probs=22.3
Q ss_pred ccHHHHHHHhccceeehhhhHHHhhh
Q 015627 102 LDLNKAAETLEVQKRRIYDITNVLEG 127 (403)
Q Consensus 102 ldLn~aA~~L~VqKRRIYDItNVLEg 127 (403)
+...++|+.|+|.+.-||.+++-++.
T Consensus 22 ~s~~~IA~~lgis~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 22 VSLHEMSRKISRSRHCIRVYLKDPVS 47 (51)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHCSTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHhhHHh
Confidence 67999999999999999998875543
No 217
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=31.24 E-value=20 Score=36.42 Aligned_cols=10 Identities=40% Similarity=0.524 Sum_probs=5.4
Q ss_pred eeccCCCCCC
Q 015627 329 KIVPSDVDND 338 (403)
Q Consensus 329 ki~psd~~~d 338 (403)
+..--|-|+|
T Consensus 311 ~FST~DrDnD 320 (409)
T 1m1j_C 311 RFSTFDNDND 320 (409)
T ss_dssp CCBBTTBCCS
T ss_pred eeeccCcCCC
Confidence 5555555555
No 218
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=31.05 E-value=31 Score=31.23 Aligned_cols=54 Identities=17% Similarity=0.264 Sum_probs=38.7
Q ss_pred HHHHHHHHHHH-HhhCCCCcccHHHHHHHhccceeehhhhHHH-hhhccchhhccC
Q 015627 83 LGLLTKKFINL-IKHAEDGILDLNKAAETLEVQKRRIYDITNV-LEGIGLIEKKLK 136 (403)
Q Consensus 83 LglLTkKFI~L-l~~ap~g~ldLn~aA~~L~VqKRRIYDItNV-LEgIGLIeK~sK 136 (403)
|...-++++.. ++...+..+.+..+|+.||+.+..+|..+.- |...|+|.+..+
T Consensus 245 l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~ 300 (324)
T 1hqc_A 245 LEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPR 300 (324)
T ss_dssp CCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETT
T ss_pred CCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCc
Confidence 33344455544 4555667789999999999999999995543 677888876543
No 219
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=30.91 E-value=32 Score=29.18 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=33.6
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEE
Q 015627 101 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 140 (403)
Q Consensus 101 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 140 (403)
.+...++|..||+++..+.-+.+-|+.-|+|++. +++|.
T Consensus 178 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~ 216 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLD-GREIS 216 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEES-SSCEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEec-CCEEE
Confidence 3566899999999999999999999999999886 44454
No 220
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=30.71 E-value=1.9e+02 Score=22.59 Aligned_cols=71 Identities=17% Similarity=0.098 Sum_probs=32.6
Q ss_pred hccceeehhhhHHHhhhccchhhccCCeEEEeccCCCCCCCchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015627 111 LEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDNSIPGEVDA-------DASILQADIDNLSMEELRVDEQTRELRER 183 (403)
Q Consensus 111 L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~G~~~s~~~~~~~-------~~~~Lk~El~~L~~~E~~LD~lI~~~~q~ 183 (403)
|..+++.+-++.+=|+. +.- ....|+=+|.-... ....+ +...+..+++.|..+...+...+..++..
T Consensus 27 l~~~~~e~~~~~~EL~~---l~~-d~~vy~~iG~vfv~-~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 27 VEMQINETQKALEELSR---AAD-DAEVYKSSGNILIR-VAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHH---SCT-TCCEEEEETTEEEE-ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc---CCC-CchHHHHHhHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544 442 23466667643221 12222 33344444445555555555555555544
Q ss_pred HHH
Q 015627 184 LRE 186 (403)
Q Consensus 184 L~~ 186 (403)
|+.
T Consensus 102 l~~ 104 (107)
T 1fxk_A 102 IQE 104 (107)
T ss_dssp HHT
T ss_pred HHH
Confidence 443
No 221
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=30.68 E-value=38 Score=28.16 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=36.4
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 78 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 78 R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
|.+..-..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 27 ~~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~ 69 (222)
T 3bru_A 27 DASLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYH 69 (222)
T ss_dssp CGGGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhh
Confidence 3455567788889999988777789999999999999999984
No 222
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=30.59 E-value=33 Score=29.86 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=33.4
Q ss_pred cccHHHHHHHhcccee-ehhhhHHHhhhccchhhccCCeEE
Q 015627 101 ILDLNKAAETLEVQKR-RIYDITNVLEGIGLIEKKLKNRIR 140 (403)
Q Consensus 101 ~ldLn~aA~~L~VqKR-RIYDItNVLEgIGLIeK~sKN~i~ 140 (403)
.+...++|..||++|| .+.-+.+-|+.-|+|++.. ++|.
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~-~~i~ 208 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKN-SCFY 208 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEET-TEEE
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecC-CEEE
Confidence 4667899999999998 9999999999999998873 4443
No 223
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=30.44 E-value=38 Score=27.46 Aligned_cols=42 Identities=19% Similarity=0.083 Sum_probs=34.3
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehh
Q 015627 78 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 119 (403)
Q Consensus 78 R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 119 (403)
|.+..=..|....++++....-.-+.+.++|+..||.|.-||
T Consensus 8 ~~~~~r~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y 49 (196)
T 3he0_A 8 PAVDKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIY 49 (196)
T ss_dssp ---CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchHH
Confidence 444555778888999998877778999999999999999999
No 224
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=30.40 E-value=23 Score=29.02 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=35.6
Q ss_pred CCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 97 AEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 97 ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
++++.+.+.++|+.+++.+=++-=.+..||.-|||++.
T Consensus 32 ~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~ 69 (96)
T 2obp_A 32 NGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVS 69 (96)
T ss_dssp TTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEee
Confidence 47888999999999999999999999999999999975
No 225
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=30.37 E-value=41 Score=27.02 Aligned_cols=42 Identities=7% Similarity=-0.009 Sum_probs=34.9
Q ss_pred CcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 79 YDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 79 ~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
.+..-..|...+++++.+..-..+.+.++|+..||.|.-||-
T Consensus 7 ~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~ 48 (195)
T 3ppb_A 7 KRTKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTLFH 48 (195)
T ss_dssp -CCHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHH
Confidence 344456788889999988777789999999999999999994
No 226
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=30.33 E-value=94 Score=24.80 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015627 156 ASILQADIDNLSMEELRVDEQTRELRERLRELIE 189 (403)
Q Consensus 156 ~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lte 189 (403)
...|+..++.+...-..|...+..++.++.++..
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777777777777777776643
No 227
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=30.22 E-value=27 Score=33.42 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=38.5
Q ss_pred HHHHHhhCCCCcccHHHHHHHhcc--cee---ehhhhHHHhhhccchhhc
Q 015627 90 FINLIKHAEDGILDLNKAAETLEV--QKR---RIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~V--qKR---RIYDItNVLEgIGLIeK~ 134 (403)
..+.|..+.++.+.+.++|+++++ ..| .++-|..+|-++|++++.
T Consensus 45 ifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~ 94 (364)
T 3p9c_A 45 LLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCL 94 (364)
T ss_dssp HHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEe
Confidence 556666655578999999999998 777 899999999999999986
No 228
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=30.20 E-value=1e+02 Score=20.72 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015627 156 ASILQADIDNLSMEELRVDEQTRELRE 182 (403)
Q Consensus 156 ~~~Lk~El~~L~~~E~~LD~lI~~~~q 182 (403)
+..|++|+..|..+-..|.-.|..+.|
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566777777777766666665555443
No 229
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=30.16 E-value=35 Score=31.63 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=37.7
Q ss_pred HHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 91 INLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 91 I~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
+..+.....+.+...++|+.|++.+-.+--+++=||.-|+|+|.
T Consensus 40 L~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~ 83 (250)
T 1p4x_A 40 LTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKV 83 (250)
T ss_dssp HHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEE
T ss_pred HHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEec
Confidence 33444444567899999999999999999999999999999987
No 230
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=29.52 E-value=32 Score=29.30 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=34.7
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhccchhhc-cCCeEEE
Q 015627 101 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK-LKNRIRW 141 (403)
Q Consensus 101 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~-sKN~i~W 141 (403)
.+...++|..||+.|..+.-+.+-|+.-|+|++. .+ .|.-
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~-~i~i 207 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQR-TLLL 207 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSSS-EEEE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEcCCC-EEEE
Confidence 4678999999999999999999999999999986 44 5543
No 231
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=29.47 E-value=45 Score=27.34 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhh
Q 015627 82 SLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDI 121 (403)
Q Consensus 82 SLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDI 121 (403)
.=..|....++++.+..-.-+.+.++|+..||.|.-||--
T Consensus 8 ~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 47 (195)
T 2dg7_A 8 AEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRY 47 (195)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHH
Confidence 3356777888899887767899999999999999999853
No 232
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=29.43 E-value=28 Score=33.16 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=38.1
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccC
Q 015627 90 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 136 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 136 (403)
.+++|.+. .+.+++.++|+++++..+.++-+..+|.++|++++...
T Consensus 33 lfd~L~~~-~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~ 78 (353)
T 4a6d_A 33 VFDLLAEA-PGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETR 78 (353)
T ss_dssp HHHHHHHS-SSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHhcC-CCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEecc
Confidence 44555443 46799999999999999999999999999999986543
No 233
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=29.15 E-value=42 Score=27.68 Aligned_cols=38 Identities=13% Similarity=0.384 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 83 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 83 LglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
=..|...+++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 15 r~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~ 52 (195)
T 2iu5_A 15 QKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYN 52 (195)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGG
T ss_pred HHHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHHH
Confidence 35677788999988766689999999999999999983
No 234
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.07 E-value=38 Score=28.49 Aligned_cols=46 Identities=11% Similarity=0.210 Sum_probs=38.7
Q ss_pred HHHHHhhCCCCcccHHHHHHHh-----ccceeehhhhHHHhhhccchhhccC
Q 015627 90 FINLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKKLK 136 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~sK 136 (403)
.+++|..+ ++.++..++.+.| ++.+=-+|-.++.|+..|||.|..-
T Consensus 27 Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 77 (145)
T 2fe3_A 27 ILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTY 77 (145)
T ss_dssp HHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEee
Confidence 56666654 5679999999999 7889999999999999999998743
No 235
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=28.91 E-value=3.1e+02 Score=24.33 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=62.7
Q ss_pred CCCCcCcHHHHHHHHHHHHhh-CCCCc-------ccHHHHHHHhcc-ceeehhhhHHHhhhccchhhccCCeEEEeccCC
Q 015627 76 SCRYDSSLGLLTKKFINLIKH-AEDGI-------LDLNKAAETLEV-QKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDN 146 (403)
Q Consensus 76 ~~R~dkSLglLTkKFI~Ll~~-ap~g~-------ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIeK~sKN~i~W~G~~~ 146 (403)
..+++.+...|.+.|..|.+. +||.. .-|++|=+.|.= .+|+.||..= +.|+.+-.-.... +...
T Consensus 25 ~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l-~~g~~~~~e~~~~-----~~~~ 98 (181)
T 3uo3_A 25 LPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL-LRNIDLTQEQTSN-----EVTT 98 (181)
T ss_dssp SCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH-HHCCCTTSHHHHH-----HHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH-HhCCCcccccccc-----cccc
Confidence 344788999999999999754 56643 468888888865 8899999731 1455543321000 0000
Q ss_pred CCCCCchHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhh
Q 015627 147 SIPGEVDADASILQADIDN------LSMEELRVDEQTRELRERLRELIEN 190 (403)
Q Consensus 147 s~~~~~~~~~~~Lk~El~~------L~~~E~~LD~lI~~~~q~L~~Lted 190 (403)
..+ ++.-++-.+.++|+. |..-..++++.|..|.++|....+.
T Consensus 99 ~d~-~fLme~me~rE~leea~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 147 (181)
T 3uo3_A 99 SDP-QLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYND 147 (181)
T ss_dssp TCH-HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCH-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 011 222223344444443 4444556667777777777766654
No 236
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=28.91 E-value=48 Score=27.12 Aligned_cols=44 Identities=9% Similarity=0.053 Sum_probs=36.6
Q ss_pred CCCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 77 CRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 77 ~R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
.|.+..-..|....++++....-.-+.+.++|+..||.|.-||-
T Consensus 12 ~~~~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~ 55 (213)
T 2qtq_A 12 LETPGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKY 55 (213)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHhH
Confidence 34455567788889999988777789999999999999998884
No 237
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=28.62 E-value=26 Score=31.29 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=34.0
Q ss_pred CCCCcc-cHHHHHHHhccceeehhhhHHHhhhccchhh
Q 015627 97 AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEK 133 (403)
Q Consensus 97 ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 133 (403)
.|+..+ .-.++|+.|||+|=-+=+.+..|+.-|||+.
T Consensus 23 ~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 23 KIGDHLPSERALSETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp CTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred CCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 467788 5889999999999999999999999999997
No 238
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=28.58 E-value=29 Score=31.39 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=36.7
Q ss_pred CCCCcccHHHHHHHhccceeehhhhHHHhhhccchhhccC
Q 015627 97 AEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 136 (403)
Q Consensus 97 ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 136 (403)
.|+..+.-.++|+.|||+|=-|=+.+..|+.-|||+....
T Consensus 47 ~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~ 86 (239)
T 2hs5_A 47 RPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELN 86 (239)
T ss_dssp CTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 4777899999999999999999999999999999997754
No 239
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=28.49 E-value=44 Score=30.34 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 85 LLTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 85 lLTkKFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.+...+.+.+.. .++..+ .-.++|++++|+|=-+-..++.|+.-|+|++..
T Consensus 13 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 67 (236)
T 3edp_A 13 VIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKN 67 (236)
T ss_dssp HHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC
Confidence 355666666655 456677 899999999999999999999999999999874
No 240
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=28.29 E-value=1.4e+02 Score=21.98 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015627 156 ASILQADIDNLSMEELRVDEQTRELRERLRELI 188 (403)
Q Consensus 156 ~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lt 188 (403)
+..|+.+++.|..+-..|...|..++.++..|.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777787777777777777777776653
No 241
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=28.28 E-value=41 Score=29.72 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=40.3
Q ss_pred HHHHHhhCCCCcccHHHHHHHhc-cceeehhhhHHHhhhccchhhcc
Q 015627 90 FINLIKHAEDGILDLNKAAETLE-VQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L~-VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.+.++...+.+...+.++++.++ +.+=-||--++.|+..|||++..
T Consensus 34 IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~ 80 (151)
T 3u1d_A 34 VLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIP 80 (151)
T ss_dssp HHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEee
Confidence 44556667888899999999999 99999999999999999999874
No 242
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=28.19 E-value=1.1e+02 Score=24.87 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 015627 157 SILQADIDNLSMEELRVDEQTRELRERLRELIENE 191 (403)
Q Consensus 157 ~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted~ 191 (403)
..|.+||..|..++..||..|..++..++.|-..+
T Consensus 21 ~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE 55 (96)
T 3q8t_A 21 ERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEE 55 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHH
Confidence 35567888888899999999999998888886543
No 243
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=28.16 E-value=1e+02 Score=24.73 Aligned_cols=38 Identities=24% Similarity=0.228 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 015627 153 DADASILQADIDNLSMEELRVDEQTRELRERLRELIEN 190 (403)
Q Consensus 153 ~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted 190 (403)
-..+..|+.||..|..+-..+.-.|..++++-+++-.|
T Consensus 26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777777666544
No 244
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=28.11 E-value=17 Score=30.00 Aligned_cols=44 Identities=11% Similarity=-0.016 Sum_probs=37.1
Q ss_pred CCCCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehh
Q 015627 76 SCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 119 (403)
Q Consensus 76 ~~R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 119 (403)
..|.+..-..|....++++....-.-+.+.++|+..||.|.-||
T Consensus 14 ~~r~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY 57 (216)
T 3qqa_A 14 SQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSGGSYSNIY 57 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTTSCCSSS
T ss_pred CcccHHHHHHHHHHHHHHHHHcChhhCCHHHHHHHhCCCHHHHH
Confidence 45566666778888999998877778999999999999998888
No 245
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=28.10 E-value=40 Score=28.29 Aligned_cols=39 Identities=8% Similarity=0.159 Sum_probs=33.9
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEE
Q 015627 101 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 140 (403)
Q Consensus 101 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 140 (403)
.+...++|..||+++..+.-+.+-|+.-|+|++. +++|.
T Consensus 163 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~ 201 (216)
T 4ev0_A 163 QIRHHELAALAGTSRETVSRVLHALAEEGVVRLG-PGTVE 201 (216)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec-CCEEE
Confidence 4678999999999999999999999999999875 44443
No 246
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=28.03 E-value=85 Score=26.67 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015627 154 ADASILQADIDNLSMEELRVDEQTRELRERLRE 186 (403)
Q Consensus 154 ~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~ 186 (403)
+++..|+++++.|....+.|+..|..+++.+..
T Consensus 88 ~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 120 (142)
T 3gp4_A 88 KQRIELKNRIDVMQEALDRLDFKIDNYDTHLIP 120 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666665543
No 247
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=28.03 E-value=49 Score=30.10 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=39.9
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 86 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 86 LTkKFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
+...+.+.+.. .++..+ ...++|+.|+|+|=-+-..++.|+.-|+|.+.
T Consensus 15 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 67 (243)
T 2wv0_A 15 IMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRL 67 (243)
T ss_dssp HHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence 33445555544 366677 89999999999999999999999999999976
No 248
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=27.84 E-value=97 Score=23.97 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015627 155 DASILQADIDNLSMEELRVDEQTRELRERLRELI 188 (403)
Q Consensus 155 ~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lt 188 (403)
.+..|+.+++.|..+-..|-+.+..++++|..|.
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677888888888777788888888888877653
No 249
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=27.80 E-value=37 Score=31.86 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-cccccc
Q 015627 154 ADASILQADIDNLSMEELRVDEQTRELRERLRELIENENN-RKWLFV 199 (403)
Q Consensus 154 ~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted~~n-~~~aYV 199 (403)
++.+.|++|+..|+.+..+++++..+ .++|+.|.+-... ..|-|+
T Consensus 26 ~eN~~Lk~e~~~l~~~~~~~~~l~~E-n~rLr~lL~~~~~~~~~~~i 71 (255)
T 2j5u_A 26 TENQHLKERLEELAQLESEVADLKKE-NKDLKESLDITDSIRDYDPL 71 (255)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTCCSCTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCccccccCceE
Confidence 34567889999998888888887665 4567777665443 334333
No 250
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=27.78 E-value=95 Score=24.44 Aligned_cols=26 Identities=19% Similarity=0.523 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015627 162 DIDNLSMEELRVDEQTRELRERLREL 187 (403)
Q Consensus 162 El~~L~~~E~~LD~lI~~~~q~L~~L 187 (403)
.++.+...-..|+..+..++..|.++
T Consensus 73 ~~e~i~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 73 KLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555544
No 251
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=27.53 E-value=57 Score=26.26 Aligned_cols=42 Identities=14% Similarity=0.012 Sum_probs=29.1
Q ss_pred CcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 79 YDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 79 ~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
.+..=..|....++++....-.-+.+.++|+..||.|.-||-
T Consensus 10 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~ 51 (199)
T 3on2_A 10 HGSLRRVLLARAESTLEKDGVDGLSLRQLAREAGVSHAAPSK 51 (199)
T ss_dssp CCCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTC-----CCC
T ss_pred HHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHhCCChHHHHH
Confidence 333446677888888887766789999999999999998883
No 252
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=27.42 E-value=51 Score=26.46 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 83 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 83 LglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
=..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 8 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 45 (191)
T 1sgm_A 8 REKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYH 45 (191)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHH
T ss_pred HHHHHHHHHHHHHHcCccccCHHHHHHHHCCCchhHHH
Confidence 35677888999988777789999999999999998884
No 253
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=27.36 E-value=64 Score=28.52 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=35.9
Q ss_pred CCCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 77 CRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 77 ~R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
.|...+-..|....++++....-.-+.+.++|+.+||.|.-||-
T Consensus 12 ~~~~~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~ 55 (237)
T 2hxo_A 12 RQEPLSRERIVGAAVELLDTVGERGLTFRALAERLATGPGAIYW 55 (237)
T ss_dssp ----CCHHHHHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGG
T ss_pred CCCccCHHHHHHHHHHHHHhcCcccCCHHHHHHHHCCChHHHHH
Confidence 44556667888999999988777789999999999999999995
No 254
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=27.11 E-value=99 Score=26.60 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=26.0
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchhh-ccCCeEEEe
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEK-KLKNRIRWK 142 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK-~sKN~i~W~ 142 (403)
..+.+.++|+.+||..|.|.= .|.+|||.- ...|.|+.-
T Consensus 10 ~~~~i~e~A~~~gvs~~TLR~----ye~~Gll~p~r~~~g~R~Y 49 (154)
T 2zhg_A 10 ALLTPGEVAKRSGVAVSALHF----YESKGLITSIRNSGNQRRY 49 (154)
T ss_dssp CCBCHHHHHHHHTSCHHHHHH----HHHTTSSCCEECTTSCEEB
T ss_pred cCCCHHHHHHHHCcCHHHHHH----HHHcCCCCcccCCCCCEEe
Confidence 458899999999999886632 255677642 234555554
No 255
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.07 E-value=31 Score=29.36 Aligned_cols=46 Identities=13% Similarity=0.370 Sum_probs=38.4
Q ss_pred HHHHHhhCCCCcccHHHHHHHh-----ccceeehhhhHHHhhhccchhhcc
Q 015627 90 FINLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.+++|..+.++.++..++.+.| .+.+=-+|-.++.|+..|||.|..
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 5666765543679999999998 688889999999999999999874
No 256
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=26.86 E-value=97 Score=27.78 Aligned_cols=19 Identities=11% Similarity=0.359 Sum_probs=16.3
Q ss_pred EEEEeCCCCCeEEecCCCc
Q 015627 215 LIAIKAPQGTTLEVPDPDE 233 (403)
Q Consensus 215 vIAIKAP~gT~LEVPdP~e 233 (403)
.|.|+.-+.|+|++-..++
T Consensus 66 FIlV~T~k~t~I~ceISeD 84 (155)
T 2aze_A 66 FIIVNTSKKTVIDCSISND 84 (155)
T ss_dssp CEEEEEESSCCEEEEECTT
T ss_pred EEEEEcCCCCEEEEEEecC
Confidence 6999999999999987654
No 257
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=26.86 E-value=43 Score=27.62 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 84 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 84 glLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
..|...+++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 7 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 43 (185)
T 2yve_A 7 EMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIY 43 (185)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHH
Confidence 4577788999988777789999999999999999994
No 258
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=26.75 E-value=27 Score=26.92 Aligned_cols=26 Identities=12% Similarity=0.310 Sum_probs=23.3
Q ss_pred CCCcccHHHHHHHhccceeehhhhHH
Q 015627 98 EDGILDLNKAAETLEVQKRRIYDITN 123 (403)
Q Consensus 98 p~g~ldLn~aA~~L~VqKRRIYDItN 123 (403)
....+.+.+||+-|++.+..+|.+++
T Consensus 13 ~K~~LTi~EaAeylgIg~~~l~~L~~ 38 (70)
T 1y6u_A 13 ERYTLTIEEASKYFRIGENKLRRLAE 38 (70)
T ss_dssp TSSEEEHHHHHHHTCSCHHHHHHHHH
T ss_pred ccceeCHHHHHHHHCcCHHHHHHHHH
Confidence 45689999999999999999999874
No 259
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=26.74 E-value=43 Score=27.03 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=35.0
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 78 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 78 R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
|....-..|....++++....-.-+.+.++|+..||.|.-||-
T Consensus 5 r~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 47 (183)
T 1zk8_A 5 RIGLTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYN 47 (183)
T ss_dssp -CCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHhcCccccCHHHHHHHcCCCchHHHH
Confidence 3344456788889999988777789999999999999999984
No 260
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=26.58 E-value=22 Score=28.59 Aligned_cols=41 Identities=12% Similarity=0.265 Sum_probs=33.2
Q ss_pred cCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 80 DSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 80 dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
...-..|..-+++++.+..-..+.+.++|+..||.|.-||-
T Consensus 11 ~~tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~ 51 (177)
T 3kkc_A 11 QKTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYS 51 (177)
T ss_dssp HHHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHHH
Confidence 33445667778888888766789999999999999998883
No 261
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=26.26 E-value=38 Score=27.13 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehh
Q 015627 83 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 119 (403)
Q Consensus 83 LglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 119 (403)
=..|....++++.+..-.-+.+.++|+..||.|.-||
T Consensus 10 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 46 (188)
T 3qkx_A 10 AEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIY 46 (188)
T ss_dssp HHHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHH
Confidence 3557777889998877778999999999999999999
No 262
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=26.03 E-value=30 Score=34.07 Aligned_cols=101 Identities=16% Similarity=0.080 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccCHHHHhhccCCCCceE--EEEeCCCCCeEEe
Q 015627 151 EVDADASILQADIDNLSMEELRVDEQTRELRERLRELIENENNRKWLFVTEEDIKNLHCFQNQTL--IAIKAPQGTTLEV 228 (403)
Q Consensus 151 ~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted~~n~~~aYVT~eDI~~l~~f~~qTv--IAIKAP~gT~LEV 228 (403)
.+.++.++|.+|+..|+..-...+..|+.++..|..+...-...+-.....+..+..+| ..++ -.-..++..+.++
T Consensus 2 ~~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~~~--~~~~~~~~~~~~~~dC~~i 79 (323)
T 1lwu_C 2 SGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPC--QDTTANKISPITGKDCQQV 79 (323)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC--EEHHHHTBCSCCCSSHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--ccccccccCCCCCcCHHHH
Q ss_pred cCCCcccCCCCCcEEEEEecCCCceEEE
Q 015627 229 PDPDEAVDYPQRRYRIILRSTMGPIDVY 256 (403)
Q Consensus 229 PdP~e~~~~~q~~YqI~LkSt~GPIdVy 256 (403)
........ .-|.|+......|+.||
T Consensus 80 ~~~g~~~S---GvY~I~p~~~~~pf~V~ 104 (323)
T 1lwu_C 80 VDNGGKDS---GLYYIKPLKAKQPFLVF 104 (323)
T ss_dssp HTTTCCSS---EEEEECCTTCSSCEEEE
T ss_pred HhcCCCCC---eEEEEecCCCCCcEEEE
No 263
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=25.91 E-value=40 Score=29.48 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=34.7
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhc--------------cceeehhhhHHHhhhccchhhccC
Q 015627 89 KFINLIKHAEDGILDLNKAAETLE--------------VQKRRIYDITNVLEGIGLIEKKLK 136 (403)
Q Consensus 89 KFI~Ll~~ap~g~ldLn~aA~~L~--------------VqKRRIYDItNVLEgIGLIeK~sK 136 (403)
.+.+++...+.|. .++|+.+| |++=-|-.++..||..|||++..+
T Consensus 58 ~lr~~i~~g~~G~---~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~ 116 (150)
T 2v7f_A 58 ILRRVYLDGPVGI---ERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPG 116 (150)
T ss_dssp HHHHHHHHCSBCH---HHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHhCCCCH---HHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeCC
Confidence 3444454445554 99999999 777779999999999999998743
No 264
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.47 E-value=73 Score=31.80 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----cccccccccCHHHHhh
Q 015627 155 DASILQADIDNLSMEELRVDEQTRELRERLRELIEN----ENNRKWLFVTEEDIKN 206 (403)
Q Consensus 155 ~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted----~~n~~~aYVT~eDI~~ 206 (403)
++..|++|++.|+++-.+|++.|+.++.+++.+.+- +.-++-+|-.-+|+++
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 356777777777777777777777777777665442 2223445555555553
No 265
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=25.37 E-value=54 Score=26.54 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=33.3
Q ss_pred CcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 81 SSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 81 kSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
..=..|....++++....-.-+.+.++|+..||.|.-||-
T Consensus 17 ~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~ 56 (206)
T 3kz9_A 17 KRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFN 56 (206)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHHH
Confidence 3345677778889988777789999999999999999984
No 266
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=25.26 E-value=40 Score=26.63 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=37.6
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhcc----ceeehhhhHHHhhhccchhhcc
Q 015627 88 KKFINLIKHAEDGILDLNKAAETLEV----QKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 88 kKFI~Ll~~ap~g~ldLn~aA~~L~V----qKRRIYDItNVLEgIGLIeK~s 135 (403)
-.++.++-.. +.+...++|+.|++ .+--++-+++-||.-|+|+|..
T Consensus 13 ~~vL~~L~~~--~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 13 WDVMNIIWDK--KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHS--SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 3456666553 46899999999985 6889999999999999999875
No 267
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=25.17 E-value=1.7e+02 Score=21.96 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015627 156 ASILQADIDNLSMEELRVDEQTRELRERLREL 187 (403)
Q Consensus 156 ~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~L 187 (403)
...|+.+++.|..+-..|...|..++..+..|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666655444
No 268
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=24.86 E-value=1.4e+02 Score=22.09 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015627 155 DASILQADIDNLSMEELRVDEQTRELRERLREL 187 (403)
Q Consensus 155 ~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~L 187 (403)
.+..|+.+++.|..+-..|...|..++.++..|
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888887778888888777777665
No 269
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=24.73 E-value=23 Score=31.73 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=34.5
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 98 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 98 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
..+.+.+.++|+.|++.+=.+--.+.-||..|||+|..
T Consensus 24 ~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~ 61 (230)
T 3cta_A 24 NRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTV 61 (230)
T ss_dssp SEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34568899999999999999999999999999999973
No 270
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=24.60 E-value=47 Score=27.82 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=38.1
Q ss_pred HHHHHhhCCCCcccHHHHHHHh-----ccceeehhhhHHHhhhccchhhcc
Q 015627 90 FINLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.+++|.++. +-++..++.+.| .+.+=-+|-.++.|+..|||.|..
T Consensus 19 Il~~L~~~~-~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 68 (139)
T 3mwm_A 19 VSAALQEVE-EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLR 68 (139)
T ss_dssp HHHHHTTCS-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 566676654 589999999998 578889999999999999999974
No 271
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.54 E-value=1.3e+02 Score=24.90 Aligned_cols=33 Identities=12% Similarity=0.234 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015627 157 SILQADIDNLSMEELRVDEQTRELRERLRELIE 189 (403)
Q Consensus 157 ~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lte 189 (403)
.-|+..++.|...-..|.+.+..+++++..+.+
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~ 123 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSP 123 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777777777777766643
No 272
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=24.30 E-value=55 Score=27.16 Aligned_cols=37 Identities=8% Similarity=0.124 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehh
Q 015627 83 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 119 (403)
Q Consensus 83 LglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 119 (403)
=..+...+++++....-..+.+.++|+..||.|.-||
T Consensus 14 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 50 (189)
T 3vp5_A 14 RNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFY 50 (189)
T ss_dssp HHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHH
Confidence 3567778899998877778999999999999999988
No 273
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.13 E-value=54 Score=27.81 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=38.0
Q ss_pred HHHHHhhCCCCcccHHHHHHHh-----ccceeehhhhHHHhhhccchhhcc
Q 015627 90 FINLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 90 FI~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.+++|..+ ++.++..++.+.| .+.+=-+|-.++.|+..|||.|..
T Consensus 32 IL~~l~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 32 VVSVLYRS-GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHHC-SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEE
Confidence 55666655 4579999999998 788999999999999999999874
No 274
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=24.09 E-value=1.5e+02 Score=24.08 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 015627 163 IDNLSMEELRVDEQTRELRERLRELIEN 190 (403)
Q Consensus 163 l~~L~~~E~~LD~lI~~~~q~L~~Lted 190 (403)
|+.-..+-..|.+.|...++.|++|..+
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3333344445555566666777776543
No 275
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=24.08 E-value=64 Score=25.84 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=35.2
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 78 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 78 R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
|....=..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 7 ~~~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 49 (191)
T 3on4_A 7 NISNTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHY 49 (191)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhhh
Confidence 3344556788888999988776789999999999999999984
No 276
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=24.06 E-value=43 Score=26.92 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=33.9
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 78 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 78 R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
|.+..-..|....++++....-.-+.+.++|+..||.|.-||-
T Consensus 7 ~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 49 (196)
T 3col_A 7 KDMNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYL 49 (196)
T ss_dssp ---CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHH
Confidence 3344456777888899988766789999999999999999984
No 277
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=24.06 E-value=37 Score=27.85 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=35.3
Q ss_pred CCCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 77 CRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 77 ~R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
.|.+..-..|....++++....-.-+.+.++|+..||.|.-||-
T Consensus 10 ~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~ 53 (212)
T 3knw_A 10 KKSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYH 53 (212)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHHH
Confidence 34455557777888889988777789999999999999999884
No 278
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=24.01 E-value=21 Score=32.15 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=31.6
Q ss_pred ccHHHHHHHhccceeehhhhHHHhhhccchhhccC
Q 015627 102 LDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 136 (403)
Q Consensus 102 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 136 (403)
....++|+.|++.+-.+..+++-||.-|||++...
T Consensus 25 ~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (230)
T 1fx7_A 25 PLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD 59 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred CcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 34499999999999999999999999999999853
No 279
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=23.89 E-value=38 Score=31.44 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=39.3
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEEE
Q 015627 99 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRW 141 (403)
Q Consensus 99 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W 141 (403)
++..+..++|+.|++..+-+-..++-|.-.|+|++...+.|.-
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~~~~~~~~ 218 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKISEMARFVPVKIINDNTVVL 218 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEETTTEEEE
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEecCCeEEe
Confidence 5788999999999999999999999999999999887777763
No 280
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=23.70 E-value=50 Score=26.85 Aligned_cols=43 Identities=12% Similarity=0.174 Sum_probs=35.0
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 78 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 78 R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
|.+..-..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 13 ~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 55 (211)
T 3him_A 13 GTSKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVYP 55 (211)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChhhh
Confidence 3444456788889999988777789999999999999999983
No 281
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=23.18 E-value=55 Score=28.23 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=29.3
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchh
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIE 132 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe 132 (403)
+.-+|..+.+..|..||-|.|.+..|..+|+.-
T Consensus 32 ~~~nvp~L~~~TGmPRRTiQd~I~aL~elgI~~ 64 (117)
T 3ke2_A 32 ARHNLLSLGKLTGMPRRTLQDAIASFADIGIEV 64 (117)
T ss_dssp SCCCHHHHHHHHCCCHHHHHHHHHTGGGGTCEE
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHhhhCCeEE
Confidence 444999999999999999999999999999753
No 282
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=22.98 E-value=81 Score=29.96 Aligned_cols=41 Identities=12% Similarity=0.265 Sum_probs=36.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 015627 150 GEVDADASILQADIDNLSMEELRVDEQTRELRERLRELIEN 190 (403)
Q Consensus 150 ~~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted 190 (403)
.++++++..|...++.+.+.|+.....|+.+.++|++|-+.
T Consensus 9 d~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~ 49 (233)
T 2yko_A 9 DQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDY 49 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677899999999999999999999999999999999664
No 283
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=22.80 E-value=49 Score=26.72 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 85 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 85 lLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
.|....++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 6 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 41 (194)
T 3bqz_B 6 KILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYY 41 (194)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHH
Confidence 466778888888777789999999999999999984
No 284
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=22.76 E-value=69 Score=28.95 Aligned_cols=50 Identities=22% Similarity=0.233 Sum_probs=40.1
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 86 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 86 LTkKFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
+...+.+.+.. .++..+ ...++|+.++|+|=-+-..++.|+.-|+|.+..
T Consensus 10 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~~ 63 (239)
T 3bwg_A 10 IATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVR 63 (239)
T ss_dssp HHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeC
Confidence 33445555543 456677 899999999999999999999999999999863
No 285
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=22.72 E-value=64 Score=23.47 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHH-HhhCCCCcccHHHHHHHhccceeehhhhHH
Q 015627 82 SLGLLTKKFINL-IKHAEDGILDLNKAAETLEVQKRRIYDITN 123 (403)
Q Consensus 82 SLglLTkKFI~L-l~~ap~g~ldLn~aA~~L~VqKRRIYDItN 123 (403)
.|..+-+.+|.. +... | +...+|+.||+.|+.||.-+.
T Consensus 17 ~l~~~Er~~I~~aL~~~--g--n~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEY--P--STRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp SCSHHHHHHHHHHHHHS--C--SHHHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--C--CHHHHHHHhCCCHHHHHHHHH
Confidence 355566666654 4554 3 678999999999999997654
No 286
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=22.70 E-value=37 Score=27.75 Aligned_cols=43 Identities=9% Similarity=0.022 Sum_probs=34.8
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 78 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 78 R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
|.+..-..|....++++....-.-+.+.++|+..||.|.-||-
T Consensus 9 ~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 51 (202)
T 3lwj_A 9 QNKERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYN 51 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHHH
Confidence 3444455677788899988777789999999999999998884
No 287
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=22.68 E-value=26 Score=28.53 Aligned_cols=45 Identities=7% Similarity=-0.057 Sum_probs=34.0
Q ss_pred CCCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhh
Q 015627 77 CRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDI 121 (403)
Q Consensus 77 ~R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDI 121 (403)
.|.+..=..|....++++....-.-+.+.++|+..||.|.-||--
T Consensus 10 ~~~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~ 54 (191)
T 4aci_A 10 DKPTNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHH 54 (191)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchHHHHH
Confidence 444555567888888888776656799999999999999999853
No 288
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=22.46 E-value=53 Score=26.99 Aligned_cols=40 Identities=10% Similarity=0.019 Sum_probs=33.9
Q ss_pred CcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 81 SSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 81 kSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
..=..|...+++++....-.-+.+.++|+..||.|.-||-
T Consensus 9 ~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~ 48 (193)
T 2dg8_A 9 QRRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTY 48 (193)
T ss_dssp THHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHH
T ss_pred hHHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCchhhhe
Confidence 3446677889999988777789999999999999999983
No 289
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.04 E-value=1.8e+02 Score=23.05 Aligned_cols=8 Identities=25% Similarity=0.077 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 015627 156 ASILQADI 163 (403)
Q Consensus 156 ~~~Lk~El 163 (403)
+..||..+
T Consensus 21 i~eLq~~L 28 (72)
T 3nmd_A 21 LRDLQYAL 28 (72)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444333
No 290
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=21.87 E-value=50 Score=26.39 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhh
Q 015627 85 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDI 121 (403)
Q Consensus 85 lLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDI 121 (403)
.|....++++....-.-+.+.++|+..||.|.-||--
T Consensus 8 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 44 (170)
T 3egq_A 8 RIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYH 44 (170)
T ss_dssp HHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHHH
Confidence 4666778888776666799999999999999999853
No 291
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=21.62 E-value=33 Score=28.59 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=34.7
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhh
Q 015627 78 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDI 121 (403)
Q Consensus 78 R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDI 121 (403)
|.+..-..|....++++....-.-+.+.++|+..||.|.-||--
T Consensus 20 r~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~ 63 (214)
T 2zb9_A 20 PAEEVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYKW 63 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHH
Confidence 33344456677788888887667899999999999999999853
No 292
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=21.44 E-value=38 Score=28.34 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=33.3
Q ss_pred ccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEE
Q 015627 102 LDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 140 (403)
Q Consensus 102 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 140 (403)
+...++|..||+++..+.-+.+-|+.-|+|++.. ++|.
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~-~~i~ 177 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLRREGLIATAY-RRVY 177 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEET-TEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC-CEEE
Confidence 6778999999999999999999999999998763 4444
No 293
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=21.38 E-value=46 Score=26.68 Aligned_cols=37 Identities=8% Similarity=0.062 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 84 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 84 glLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
..|....++++....-.-+.+.++|+..||.|.-||-
T Consensus 11 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 47 (194)
T 2g7s_A 11 DDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHH 47 (194)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHHHH
Confidence 4566778888888766789999999999999999884
No 294
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=21.37 E-value=69 Score=28.48 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=35.5
Q ss_pred CCCCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 76 SCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 76 ~~R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
..|...+-..+..--++++....-.-+.+.++|+.+||.+.-||-
T Consensus 24 ~~~~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~ 68 (241)
T 2hxi_A 24 AGRRRWSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLYR 68 (241)
T ss_dssp ----CCCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHHHH
Confidence 344556667888899999987766689999999999999999993
No 295
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=21.17 E-value=73 Score=24.82 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHH
Q 015627 83 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNV 124 (403)
Q Consensus 83 LglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNV 124 (403)
|..+-+.+|...-...+| +..++|+.|||.|+.||.-+.-
T Consensus 48 l~~~E~~~i~~aL~~~~g--n~~~aA~~LGIsr~tL~rklkk 87 (91)
T 1ntc_A 48 QPELERTLLTTALRHTQG--HKQEAARLLGWGAATLTAKLKE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHTTT--CTTHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC--CHHHHHHHHCcCHHHHHHHHHH
Confidence 344445555543333333 3458999999999999976543
No 296
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=21.17 E-value=1e+02 Score=25.44 Aligned_cols=42 Identities=14% Similarity=0.266 Sum_probs=34.4
Q ss_pred CcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 79 YDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 79 ~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
.+..=..|....++++.+..-.-+.++++|+..||.|.-||-
T Consensus 12 ~~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~ 53 (203)
T 3ccy_A 12 YENIRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYH 53 (203)
T ss_dssp CTTHHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTT
T ss_pred hhhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcCeeee
Confidence 344446677788889988777789999999999999999984
No 297
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=21.16 E-value=39 Score=28.84 Aligned_cols=39 Identities=10% Similarity=0.160 Sum_probs=33.7
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEE
Q 015627 101 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 140 (403)
Q Consensus 101 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 140 (403)
.+...++|..||+++..+.-+.+-|+.-|+|++. +++|.
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~ 213 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEVS-PRSVT 213 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-SSCEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEec-CCEEE
Confidence 3678999999999999999999999999999876 34443
No 298
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=21.10 E-value=52 Score=32.43 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=32.4
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 100 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 100 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
..+....+++.++++++...-.++-|...|++++..
T Consensus 310 p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~~~~ 345 (373)
T 3eqx_A 310 PYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQ 345 (373)
T ss_dssp SEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC-
T ss_pred CCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEEEeC
Confidence 468889999999999999999999999999998864
No 299
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.04 E-value=72 Score=28.45 Aligned_cols=44 Identities=11% Similarity=0.167 Sum_probs=36.9
Q ss_pred CCcCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhh
Q 015627 78 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDI 121 (403)
Q Consensus 78 R~dkSLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDI 121 (403)
|...+-..|....++++....-.-+.+.++|+.+||.|.-||--
T Consensus 16 r~~~tr~~Il~AA~~l~~e~G~~~~S~~~IA~~aGvs~~tlY~h 59 (243)
T 2g7l_A 16 KPALSRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYVY 59 (243)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTTT
T ss_pred CcccCHHHHHHHHHHHHHhcCchhcCHHHHHHHHCCChhHHHHH
Confidence 44456678888999999887777899999999999999999953
No 300
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=20.93 E-value=2.2e+02 Score=24.99 Aligned_cols=97 Identities=21% Similarity=0.282 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHHHh-hCCCCc---------------ccHHHHHHHhcc-ceeehhhhHHHhhhccchhhccCCeEEEecc
Q 015627 82 SLGLLTKKFINLIK-HAEDGI---------------LDLNKAAETLEV-QKRRIYDITNVLEGIGLIEKKLKNRIRWKGL 144 (403)
Q Consensus 82 SLglLTkKFI~Ll~-~ap~g~---------------ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIeK~sKN~i~W~G~ 144 (403)
....|-+.|..+.+ -+||.. .-|++|=+.|.= .+|+.||.. |.|+.+-.-.
T Consensus 19 d~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~--l~g~~~~~e~---------- 86 (174)
T 3hho_A 19 DGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS--LQGIEMNAEQ---------- 86 (174)
T ss_dssp CHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH--HTTCCCC-------------
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH--ccCCCccccc----------
Confidence 37888999999875 356542 235666666654 889999974 4566553321
Q ss_pred CCCCCCCchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhhh
Q 015627 145 DNSIPGEVDADASILQADIDN----------LSMEELRVDEQTRELRERLRELIEN 190 (403)
Q Consensus 145 ~~s~~~~~~~~~~~Lk~El~~----------L~~~E~~LD~lI~~~~q~L~~Lted 190 (403)
......++.-.+-.+.++++. |..-...+++.|+.+.++|....++
T Consensus 87 ~~~~d~~fLme~me~rE~le~~~~~~d~~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 142 (174)
T 3hho_A 87 QTLQDPMFLMEQMELREELESVTACADPEAALVAFDTKVTAMQRHYLAQLQGQLAQ 142 (174)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 001111222223334444443 4455566777777777777776654
No 301
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=20.72 E-value=1e+02 Score=27.24 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=33.3
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeE
Q 015627 101 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRI 139 (403)
Q Consensus 101 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i 139 (403)
.+...++|..||+.|..+.-+.+-|+.-|+|++. +++|
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~-~~~i 254 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAH-GKTI 254 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-SSEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEc-CCEE
Confidence 4677999999999999999999999999999976 4444
No 302
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.62 E-value=88 Score=30.02 Aligned_cols=38 Identities=32% Similarity=0.410 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 015627 153 DADASILQADIDNLSMEELRVDEQTRELRERLRELIEN 190 (403)
Q Consensus 153 ~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted 190 (403)
..++..|+.++..|.++..+|-+.++.++++|..|.+.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeE 90 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 90 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999999999998999999999988888653
No 303
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=20.53 E-value=75 Score=23.04 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHH
Q 015627 83 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNV 124 (403)
Q Consensus 83 LglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNV 124 (403)
|..+-+.+|.-.-..-+| +..+||+.|||.|+.+|.-+.-
T Consensus 16 l~~~E~~~i~~aL~~~~g--n~~~aA~~LGisr~tL~rklkk 55 (63)
T 3e7l_A 16 KKEFEKIFIEEKLREYDY--DLKRTAEEIGIDLSNLYRKIKS 55 (63)
T ss_dssp HHHHHHHHHHHHHHHTTT--CHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC--CHHHHHHHHCcCHHHHHHHHHH
Confidence 444556666544333333 4679999999999999987643
No 304
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=20.51 E-value=84 Score=27.06 Aligned_cols=39 Identities=26% Similarity=0.338 Sum_probs=34.1
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEE
Q 015627 101 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 140 (403)
Q Consensus 101 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 140 (403)
.+...++|..||+.|..+.-+.+-|+.-|+|++. +++|.
T Consensus 186 ~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~-~~~i~ 224 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKTLNELQDNGLIELH-RKEIL 224 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEE-TTEEE
T ss_pred cCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEec-CCEEE
Confidence 3678999999999999999999999999999876 44554
No 305
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=20.47 E-value=1.1e+02 Score=25.51 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=33.8
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEE
Q 015627 101 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 140 (403)
Q Consensus 101 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 140 (403)
.+...++|..||++|..+.-+.+-|+.-|+|++. +++|.
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~ 205 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAH-GKTIV 205 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeC-CCEEE
Confidence 4677999999999999999999999999999976 44443
No 306
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=20.33 E-value=89 Score=27.96 Aligned_cols=38 Identities=18% Similarity=0.073 Sum_probs=33.0
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhccchhhccC
Q 015627 99 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 136 (403)
Q Consensus 99 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 136 (403)
+......++|+.|+|.+-.+-.+++-||.-|||++...
T Consensus 22 ~~~~~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (226)
T 2qq9_A 22 GVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASD 59 (226)
T ss_dssp TCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred CCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 33445699999999999999999999999999999743
No 307
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=20.31 E-value=39 Score=28.17 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=33.5
Q ss_pred ccHHHHHHHhccceeehhhhHHHhhhccchhhccCCeEE
Q 015627 102 LDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 140 (403)
Q Consensus 102 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 140 (403)
+...++|..||+.+..+.-+.+-|+.-|+|++. ++.|.
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~ 202 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVK-GKTMV 202 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec-CCEEE
Confidence 677899999999999999999999999999876 44454
No 308
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=20.22 E-value=85 Score=29.18 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhccchhhcc
Q 015627 85 LLTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 135 (403)
Q Consensus 85 lLTkKFI~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 135 (403)
.+...+.+.+.. .++..+ .-.++|+.++|+|=-+-..++.|+.-|+|++..
T Consensus 33 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 87 (272)
T 3eet_A 33 RVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGRS 87 (272)
T ss_dssp HHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 445556666654 356677 899999999999999999999999999998763
No 309
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.18 E-value=1.1e+02 Score=30.66 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----cccccccccCHHHHhh
Q 015627 156 ASILQADIDNLSMEELRVDEQTRELRERLRELIEN----ENNRKWLFVTEEDIKN 206 (403)
Q Consensus 156 ~~~Lk~El~~L~~~E~~LD~lI~~~~q~L~~Lted----~~n~~~aYVT~eDI~~ 206 (403)
...|++|+..|.++..+|++.|++++..++.+.+. +..++-+|-+-+|+++
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35677777777777777777777777766665432 2223344555555543
No 310
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=20.17 E-value=49 Score=26.81 Aligned_cols=38 Identities=11% Similarity=0.098 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 015627 83 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 120 (403)
Q Consensus 83 LglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 120 (403)
=..|...+++++....-.-+.+.++|+..||.|.-||-
T Consensus 16 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 53 (203)
T 3f1b_A 16 EQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYL 53 (203)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHH
Confidence 34577778899988777789999999999999999985
No 311
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=20.17 E-value=1.1e+02 Score=29.96 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=33.7
Q ss_pred CcHHHHH------HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccchhh
Q 015627 81 SSLGLLT------KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEK 133 (403)
Q Consensus 81 kSLglLT------kKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 133 (403)
+-||++. ...++++....++.++++++++..++. .-||+..|+.+|++..
T Consensus 188 SDLG~~sYrsYW~~~il~~L~~~~~~~isi~~is~~T~i~---~~DIi~tL~~l~~l~~ 243 (284)
T 2ozu_A 188 SDLGRLSYMAYWKSVILECLYHQNDKQISIKKLSKLTGIC---PQDITSTLHHLRMLDF 243 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHCBC---HHHHHHHHHHTTCC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHhCCC---HHHHHHHHHHCCCEEe
Confidence 3455555 235666666677889999999999985 5799999999999963
No 312
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=20.07 E-value=71 Score=25.43 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=32.0
Q ss_pred HHHHHhhCCCCcccH-HHHHHHhccceeehhhhHHHhhhccchhhc
Q 015627 90 FINLIKHAEDGILDL-NKAAETLEVQKRRIYDITNVLEGIGLIEKK 134 (403)
Q Consensus 90 FI~Ll~~ap~g~ldL-n~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 134 (403)
.+.+|...|..-.+| ..+++.+++..-.||-++.-||.-|+|++.
T Consensus 14 IL~~L~~~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~ 59 (108)
T 3l7w_A 14 ILAIVSKHDSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTY 59 (108)
T ss_dssp HHHHHHHSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHcCCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEE
Confidence 444555544333444 234445789999999999999999999986
No 313
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=20.04 E-value=61 Score=26.77 Aligned_cols=40 Identities=13% Similarity=-0.034 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhh
Q 015627 82 SLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDI 121 (403)
Q Consensus 82 SLglLTkKFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDI 121 (403)
.-..|....++++....-.-+.+.++|+..||.|.-||--
T Consensus 18 ~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~ 57 (218)
T 3gzi_A 18 NRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYY 57 (218)
T ss_dssp HHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHHH
Confidence 4456667788888877767899999999999999999953
No 314
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=20.03 E-value=92 Score=27.96 Aligned_cols=40 Identities=18% Similarity=0.340 Sum_probs=31.9
Q ss_pred CcccHHHHHHHh-----ccceeehhhhHHHhhhccchhhccCCeEE
Q 015627 100 GILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKKLKNRIR 140 (403)
Q Consensus 100 g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 140 (403)
+.+++..++..+ ++....+++.++.|+..|||++. .+.|+
T Consensus 294 g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~ 338 (350)
T 2qen_A 294 GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYK 338 (350)
T ss_dssp TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEE
Confidence 346788888777 78888999999999999999886 24444
Done!