BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015628
(403 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225452017|ref|XP_002283656.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 1 [Vitis
vinifera]
gi|296087286|emb|CBI33660.3| unnamed protein product [Vitis vinifera]
Length = 381
Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust.
Identities = 309/403 (76%), Positives = 337/403 (83%), Gaps = 22/403 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIE V G+DVYPA+QQMLIHQGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQGKVLKDATTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+VAE+SFVV+ML+K+KVS+ GAST SAAP +QAQ SS+PPTS QP+T Q AP VA
Sbjct: 61 ENQVAESSFVVIMLSKNKVSAGGASTTSAAPTSQAQPVSSSPPTSNQPSTAPQ--APVVA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P+ +PE PAPA AP SS SD+YGQAASNLVAG+NLE T+QQI
Sbjct: 119 LPEVIPE-----------------PAPAVAPSISSDSDIYGQAASNLVAGNNLEVTIQQI 161
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
LDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ PP AR A G A N P Q
Sbjct: 162 LDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEGPPAARPPASGLAVNLPTQA 221
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
Q P +SGPNANPLDLFPQGLP+MGSNA AGTLDFLRNS QFQALR MVQANPQI
Sbjct: 222 -PQGPQTTVASSGPNANPLDLFPQGLPSMGSNASAGTLDFLRNSPQFQALRAMVQANPQI 280
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 360
LQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPVE GEGNVLGQL + +PQAVT+TPEER
Sbjct: 281 LQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVE-GEGNVLGQLGT-VPQAVTITPEER 338
Query: 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
E+IERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE+
Sbjct: 339 ESIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFEE 381
>gi|255551362|ref|XP_002516727.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223544100|gb|EEF45625.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 381
Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust.
Identities = 306/403 (75%), Positives = 335/403 (83%), Gaps = 22/403 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGT+FEI+VKPED V DVK NIE QG+DVYPASQQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTNFEIDVKPEDTVEDVKNNIEIAQGADVYPASQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSF+V+ML+K KVS SG ST S+AP +QAQ S+ PP++TQP+TT+Q PA T
Sbjct: 61 ENKVAENSFIVIMLSKRKVSPSGGSTASSAPPSQAQPASTLPPSATQPSTTAQAPAVTAE 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PQS ES P PVSS +D+YGQAASNLVAGSNLEATVQQI
Sbjct: 121 LPQSAAES-----------------TPVVNPVSSE-TDIYGQAASNLVAGSNLEATVQQI 162
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
LDMGGGSWDRETV RALRAA+NNPERAVEYLYSGIPEQ V P+ RA + GQA P A
Sbjct: 163 LDMGGGSWDRETVARALRAAFNNPERAVEYLYSGIPEQPEVQPLPRAPSSGQAAIPSA-- 220
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
AQ+PAAP + G NANPLDLFPQGLP +GS AGTLDFLRNSQQFQALR MVQANPQI
Sbjct: 221 TAQEPAAPT-SGGANANPLDLFPQGLPTIGSTTSAGTLDFLRNSQQFQALRAMVQANPQI 279
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 360
LQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPVE G+GN+LGQLASA+PQ+V+VTPEER
Sbjct: 280 LQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVE-GDGNLLGQLASAVPQSVSVTPEER 338
Query: 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
EAIERLEAMGFDRA+VLEVFFACNKNEELAANYLLDHMH+FE+
Sbjct: 339 EAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHDFEE 381
>gi|224079274|ref|XP_002305813.1| predicted protein [Populus trichocarpa]
gi|222848777|gb|EEE86324.1| predicted protein [Populus trichocarpa]
Length = 385
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 304/408 (74%), Positives = 336/408 (82%), Gaps = 28/408 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGT+FEIEVKPED V+DVKKNIE+VQG+DVYPA+QQML++QGKVLKD TTL+
Sbjct: 1 MKVFVKTLKGTNFEIEVKPEDTVADVKKNIESVQGADVYPAAQQMLVYQGKVLKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+SF VVML+KSKVSS G ST AAPA+QA SS P TQP+ TSQ P P A
Sbjct: 61 ENKVSESSFFVVMLSKSKVSSGGPSTAPAAPASQAPPASSLPSNVTQPSITSQAPVPAAA 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSD--VYGQAASNLVAGSNLEATVQ 178
PQS ES+P A V+S++ D +YGQAASNLVAGSNLEAT+Q
Sbjct: 121 LPQSAAESSP-------------------AVVTSALLDTNMYGQAASNLVAGSNLEATIQ 161
Query: 179 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG---GQAGN 235
+ILDMGGG W+RETV+RALRAA+NNPERA++YLYSGIPEQ VPPVA+ G G A N
Sbjct: 162 EILDMGGGDWNRETVVRALRAAFNNPERAIDYLYSGIPEQAEVPPVAQVVQGPASGNAVN 221
Query: 236 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 295
PPA A QP AP SGPNANPLDLFPQG + GSNAG G LDFLRNSQQFQALR MVQ
Sbjct: 222 PPAL--APQPVV-APNSGPNANPLDLFPQGHHSTGSNAGTGNLDFLRNSQQFQALRAMVQ 278
Query: 296 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTV 355
ANPQILQPMLQELGKQNP+LMRLIQEHQ DFLRLINEPVE GEGNVLGQLASAMPQAVTV
Sbjct: 279 ANPQILQPMLQELGKQNPYLMRLIQEHQADFLRLINEPVE-GEGNVLGQLASAMPQAVTV 337
Query: 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
TPEEREAIERLEAMGFDRA+VLEV+FACNKNEELAANYLLDHMHEF++
Sbjct: 338 TPEEREAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFDE 385
>gi|363807216|ref|NP_001242098.1| uncharacterized protein LOC100813881 [Glycine max]
gi|255641670|gb|ACU21107.1| unknown [Glycine max]
Length = 400
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 307/405 (75%), Positives = 333/405 (82%), Gaps = 7/405 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P D +S+VKKNIETVQG+DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAE+SF+V+ML+K+K SS ST S AP+ + SA PTST +T Q PA T A
Sbjct: 61 ENKVAESSFIVIMLSKTKSSSGEGSTTSTAPSAK----PSATPTSTSVSTAPQAPASTGA 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
V PA APAPAPAP + S SD+YGQAASNLVAGSNLE T+QQI
Sbjct: 117 SATPVTAPTAAPAPAPAPAAPAPAPAPIFSGSSVPESDIYGQAASNLVAGSNLEGTIQQI 176
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
LDMGGGSWDR+TV+R LRAAYNNPERAVEYLYSGIPEQ PPV A Q NPPA T
Sbjct: 177 LDMGGGSWDRDTVVRTLRAAYNNPERAVEYLYSGIPEQAEAPPVTGVPASAQPSNPPADT 236
Query: 241 -QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQFQALRTMVQANP 298
QA QPA+ P+SGPNANPLDLFPQGLPN+GS A GAG+LDFLRNSQQFQALR MVQANP
Sbjct: 237 PQAAQPAS-VPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANP 295
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 358
QILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPVEGGEGN+LGQLA MPQAVTVTPE
Sbjct: 296 QILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNILGQLAGTMPQAVTVTPE 355
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
ER+AIERLEAMGFDRA VLEV+FACNKNEELAANYLLDHMHEF++
Sbjct: 356 ERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 400
>gi|5640111|emb|CAB51544.1| RAD23 protein [Solanum lycopersicum var. cerasiforme]
Length = 389
Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust.
Identities = 301/411 (73%), Positives = 326/411 (79%), Gaps = 30/411 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIE+VQG DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVADVKKNIESVQGQDVYPAAQQMLIHQGKVLKDTTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVV+ML+K+KVSS+G S++SAA +N AQ S + Q T TP T A
Sbjct: 61 ENKVAENSFVVIMLSKNKVSSTGTSSISAALSNTAQPDGS----TDQARQTITTPQATAA 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PQS ESA +SSV+DVY QAASNLVAGSNLE TVQQI
Sbjct: 117 LPQSASESA--------------PTPAPVPAAASSVTDVYDQAASNLVAGSNLETTVQQI 162
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV--------PPVARASAGGQ 232
LDMGGGSWDR+TV+RALRAAYNNPERAV+YLYSGIPEQT + P A A Q
Sbjct: 163 LDMGGGSWDRDTVVRALRAAYNNPERAVDYLYSGIPEQTEIPPVARAPAAPAVTAPASAQ 222
Query: 233 AGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT 292
A NP AQ +Q P+SGPNANPLDLFPQGL N GSNAGAG LDFLRNS QFQALR
Sbjct: 223 AINPAAQDASQ---LAVPSSGPNANPLDLFPQGLTNAGSNAGAGNLDFLRNSPQFQALRA 279
Query: 293 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA 352
MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPVE GEGNVLGQ A A+PQA
Sbjct: 280 MVQANPQILQPMLQELGKQNPHLMRLIQEHQPDFLRLINEPVE-GEGNVLGQTAGAIPQA 338
Query: 353 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
VTVTPEEREAIERLEAMGFDRALVLEV+FACNKNEELAANYLLDH+HEF++
Sbjct: 339 VTVTPEEREAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHLHEFDE 389
>gi|356575534|ref|XP_003555895.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 1
[Glycine max]
Length = 402
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 298/405 (73%), Positives = 334/405 (82%), Gaps = 6/405 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAEN+F+V+ML+KSK +S ST S A + +A TS+ P ST P + + A
Sbjct: 61 ENKVAENTFIVIMLSKSKSTSGEGSTTSTALSTKAPQTSTVP-ASTPPVSVAPQAPAPAA 119
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P ++P+PAPAPAPAP + V S D+YGQAASNLVAGSNLE T+QQI
Sbjct: 120 TGALPASVTAPVSSPSPAPAPAPAPISSGTAVEGS--DIYGQAASNLVAGSNLEGTIQQI 177
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
LDMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ P VARA Q NPPA
Sbjct: 178 LDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADA 237
Query: 241 -QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQFQALRTMVQANP 298
Q QPAA ++GPNANPLDLFPQGLPN+GS A GAG+LDFLRNSQQFQALR MVQANP
Sbjct: 238 PQTAQPAA-VTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANP 296
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 358
QILQPMLQELGKQNPHLMRLI++HQ DFLRLINEP EGGEGN+LGQ+AS MPQAVTVTPE
Sbjct: 297 QILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGGEGNILGQMASGMPQAVTVTPE 356
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
ER+AIERLEAMGFDRA+VLEV+FACNKNEELAANYLLDHMHEFE+
Sbjct: 357 ERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEE 401
>gi|297832888|ref|XP_002884326.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
gi|297330166|gb|EFH60585.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
Length = 417
Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 312/424 (73%), Positives = 344/424 (81%), Gaps = 28/424 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVK ED V+DVKKNIETVQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKLEDSVADVKKNIETVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSF+VVML KSK +S+GAS+ SA S PP+++QP+ + QTPA A
Sbjct: 61 ENKVAENSFIVVMLNKSKPASTGASSASAG----TSQAKSTPPSTSQPSISPQTPASVAA 116
Query: 121 PPQSVPESAPPP-------------AAPAPAPAPAPAPAPAPAPVSS---SVSDVYGQAA 164
P P APPP P P P PA P+ PAP S+ S DVYGQAA
Sbjct: 117 PVAPAPTRAPPPAPTPAPVAATETVTTPIPEPVPATIPSSTPAPDSAPAGSQGDVYGQAA 176
Query: 165 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 224
SNL AGSNLE+T+QQILDMGGG+WDRETV+RALRAA+NNPERAVEYLY+GIPEQ VPPV
Sbjct: 177 SNLAAGSNLESTIQQILDMGGGTWDRETVVRALRAAFNNPERAVEYLYTGIPEQAEVPPV 236
Query: 225 ARASAG-GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 283
ARA A GQ NP AQTQ QPAA AP SGPNANPLDLFPQGLPN+G N GAGTLDFLRN
Sbjct: 237 ARAPASFGQPANPSAQTQ--QPAA-APASGPNANPLDLFPQGLPNVGGNPGAGTLDFLRN 293
Query: 284 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGNV 341
SQQFQALR MVQANPQ+LQPMLQELGKQNP+LMRLIQ+HQ DFLRLINEPVEGG GN+
Sbjct: 294 SQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNL 353
Query: 342 LGQLASAM--PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 399
LGQ+A+ M PQA+ VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH
Sbjct: 354 LGQMAAGMPQPQAIQVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 413
Query: 400 EFED 403
EFE+
Sbjct: 414 EFEE 417
>gi|358248820|ref|NP_001240201.1| uncharacterized protein LOC100809066 [Glycine max]
gi|255644546|gb|ACU22776.1| unknown [Glycine max]
Length = 392
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 305/404 (75%), Positives = 331/404 (81%), Gaps = 13/404 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P D +S+VKKNIETVQG+DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSF+V+ML+K+K SS ST S AP+ +A SA PTST + Q PA T A
Sbjct: 61 ENKVAENSFIVIMLSKTKSSSGEGSTTSTAPSVKA----SATPTSTSVSAAPQAPASTGA 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P V A P +A APAP + + P SD+YGQAASNLVAGSNLE T+QQI
Sbjct: 117 TPTPVTAPAAPASAAAPAPISSGSAVPE--------SDIYGQAASNLVAGSNLEGTIQQI 168
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
LDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ PPV R A Q NPPA
Sbjct: 169 LDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVTREPASAQPANPPAAA 228
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQFQALRTMVQANPQ 299
A P+SGPNANPLDLFPQGLPN+GS A GAG+LDFLRNSQQFQALR MVQANPQ
Sbjct: 229 PQAAQPASVPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQ 288
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 359
ILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPVEGGEGN+LGQLASAMPQAVTVTPEE
Sbjct: 289 ILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNILGQLASAMPQAVTVTPEE 348
Query: 360 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
R+AIERLEAMGFDRA VLEV+FACNKNEELAANYLLDHMHEF++
Sbjct: 349 RQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 392
>gi|224127650|ref|XP_002329330.1| predicted protein [Populus trichocarpa]
gi|222870784|gb|EEF07915.1| predicted protein [Populus trichocarpa]
Length = 384
Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust.
Identities = 301/410 (73%), Positives = 333/410 (81%), Gaps = 33/410 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVS-DVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MKVFVKTLKGT+FEIEVKPED V +VKKNIE VQG+DVYPA+QQMLI+QGKVLKD TTL
Sbjct: 1 MKVFVKTLKGTNFEIEVKPEDTVVVEVKKNIENVQGADVYPAAQQMLIYQGKVLKDDTTL 60
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQ----TTSSAPPT--STQPTTTSQ 113
+E+KVAENSF+VVML+KSKVSS G ST +AAP N + T ++APPT S QPT+
Sbjct: 61 DESKVAENSFIVVMLSKSKVSSGGPSTATAAPPNVSSGGPSTATAAPPTLVSAQPTS--- 117
Query: 114 TPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNL 173
S+P + P++ + A PA A + A D+YGQAASNLVAGSNL
Sbjct: 118 ----------SLPSNVTQPSSTSQAAVPAAAFSDA---------DMYGQAASNLVAGSNL 158
Query: 174 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 233
EAT+QQILDMGGGSW+RETV+RALRAA+NNPERAVEYLYSGIPEQ VPPVA+ A G A
Sbjct: 159 EATIQQILDMGGGSWNRETVVRALRAAFNNPERAVEYLYSGIPEQAEVPPVAQGPASGVA 218
Query: 234 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 293
NPPAQ Q + GPNANPLDLFPQGLP+ GSNAGAG LDFLRNSQQFQALR M
Sbjct: 219 VNPPAQAQQPAAPP---SGGPNANPLDLFPQGLPSTGSNAGAGNLDFLRNSQQFQALRAM 275
Query: 294 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAV 353
VQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPVE GEGNVLGQLASA+PQ V
Sbjct: 276 VQANPQILQPMLQELGKQNPHLMRLIQEHQPDFLRLINEPVE-GEGNVLGQLASAVPQTV 334
Query: 354 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
TVTPEEREAI+RL AMGFDRALVLEVFFACNKNEELAANYLLDHMHEF++
Sbjct: 335 TVTPEEREAIDRLVAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFDE 384
>gi|15232924|ref|NP_186903.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|55976503|sp|Q84L31.2|RD23C_ARATH RecName: Full=Putative DNA repair protein RAD23-3; AltName:
Full=RAD23-like protein 3; Short=AtRAD23-3
gi|6957717|gb|AAF32461.1| putative RAD23 [Arabidopsis thaliana]
gi|14517454|gb|AAK62617.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|21360453|gb|AAM47342.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|30409724|dbj|BAC76392.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735092|gb|ABG89116.1| Rad23-1 [synthetic construct]
gi|332640303|gb|AEE73824.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 419
Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust.
Identities = 304/436 (69%), Positives = 343/436 (78%), Gaps = 50/436 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP--- 117
ENKVAENSF+V+M+ KSK +S+ AS+ SA +QA+ S PP+++QP+ + QTPA
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAG-TSQAK---SIPPSTSQPSISPQTPASVSA 116
Query: 118 -------------------------TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV 152
TV P +PE P PA + PAP APV
Sbjct: 117 PVAPAPTRPPPPAPTPTPAPVAATETVTTP--IPE-------PVPATISSSTPAPDSAPV 167
Query: 153 SSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 212
S DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY
Sbjct: 168 GSQ-GDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLY 226
Query: 213 SGIPEQTAVPPVARA-SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS 271
+GIPEQ VPPVAR ++ GQ NPPAQTQ QPAA AP SGPNANPLDLFPQGLPN+G
Sbjct: 227 TGIPEQAEVPPVARPPASAGQPANPPAQTQ--QPAA-APASGPNANPLDLFPQGLPNVGG 283
Query: 272 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 331
N GAGTLDFLRNSQQFQALR MVQANPQ+LQPMLQELGKQNP+LMRLIQ+HQ DFLRLIN
Sbjct: 284 NPGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLIN 343
Query: 332 EPVEGG--EGNVLGQLASAM--PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 387
EPVEGG GN+LGQ+A+ M PQA+ VT EEREAIERLEAMGF+RALVLEVFFACNKNE
Sbjct: 344 EPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNE 403
Query: 388 ELAANYLLDHMHEFED 403
ELAANYLLDHMHEFE+
Sbjct: 404 ELAANYLLDHMHEFEE 419
>gi|334185033|ref|NP_001189793.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640305|gb|AEE73826.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 418
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 306/425 (72%), Positives = 343/425 (80%), Gaps = 29/425 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSF+V+M+ KSK +S+ AS+ SA +QA+ S PP+++QP+ + QTPA A
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAG-TSQAK---SIPPSTSQPSISPQTPASVSA 116
Query: 121 PPQSVPESAPPP---------------AAPAPAPAPAPAPAPAPAPVSSSVS--DVYGQA 163
P P PPP P P P PA + PAP S+ V DVYGQA
Sbjct: 117 PVAPAPTRPPPPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVGQGDVYGQA 176
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 223
ASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+GIPEQ VPP
Sbjct: 177 ASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPP 236
Query: 224 VARASA-GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 282
VAR A GQ NPPAQTQ QPAA AP SGPNANPLDLFPQGLPN+G N GAGTLDFLR
Sbjct: 237 VARPPASAGQPANPPAQTQ--QPAA-APASGPNANPLDLFPQGLPNVGGNPGAGTLDFLR 293
Query: 283 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGN 340
NSQQFQALR MVQANPQ+LQPMLQELGKQNP+LMRLIQ+HQ DFLRLINEPVEGG GN
Sbjct: 294 NSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGN 353
Query: 341 VLGQLASAM--PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 398
+LGQ+A+ M PQA+ VT EEREAIERLEAMGF+RALVLEVFFACNKNEELAANYLLDHM
Sbjct: 354 LLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHM 413
Query: 399 HEFED 403
HEFE+
Sbjct: 414 HEFEE 418
>gi|356536322|ref|XP_003536688.1| PREDICTED: putative DNA repair protein RAD23-3-like [Glycine max]
Length = 408
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 299/409 (73%), Positives = 336/409 (82%), Gaps = 8/409 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D +TLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+F+V+ML+KSK S ST S AP+ +A TS+ P ST P + +
Sbjct: 61 ENKVVENTFIVIMLSKSKSPSGEGSTTSTAPSTKAPQTSTVP-ASTPPASVVPQASAPAP 119
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSV----SDVYGQAASNLVAGSNLEAT 176
P A P + AP +P+PAPAP PAP+SS SD+YGQAASNLVAGSNLE T
Sbjct: 120 APAPAATGALPASVTAPISSPSPAPAPTPAPISSGTAVEGSDIYGQAASNLVAGSNLEGT 179
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
+QQILDMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ P VA+ A Q NP
Sbjct: 180 IQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVAQVPASAQPTNP 239
Query: 237 PAQT-QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQFQALRTMV 294
PA Q QPA P ++GPNANPLDLFPQGLPN+GS A GAG+LDFLRNSQQFQALR MV
Sbjct: 240 PADAPQTAQPA-PVTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMV 298
Query: 295 QANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT 354
QANPQILQPMLQELGKQNPHLMRLI++HQ DFLRLINEP EG EGN+LGQ+ASAMPQAVT
Sbjct: 299 QANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGAEGNILGQMASAMPQAVT 358
Query: 355 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
VTPEER+AIERLEAMGFDRA+VLEV+FACNKNEELAANYLLDHMHEFE+
Sbjct: 359 VTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEE 407
>gi|255636381|gb|ACU18529.1| unknown [Glycine max]
Length = 382
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/405 (73%), Positives = 322/405 (79%), Gaps = 25/405 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P D +S+VKKNIETVQG+DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAE+SF+V+ML+K SA PTST +T Q PA T A
Sbjct: 61 ENKVAESSFIVIMLSKP----------------------SATPTSTSVSTAPQAPASTGA 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
V PA APAPAPAP + S SD+YGQAASNLVAGSNLE T+QQI
Sbjct: 99 SATPVTAPTAAPAPAPAPAAPAPAPAPIFSGSSVPESDIYGQAASNLVAGSNLEGTIQQI 158
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
LDMGGGSWDR+TV+R LRAAYNNPERAVEYLYSGIPEQ PV A Q NPPA T
Sbjct: 159 LDMGGGSWDRDTVVRTLRAAYNNPERAVEYLYSGIPEQAEALPVTGVPASAQPSNPPADT 218
Query: 241 -QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQFQALRTMVQANP 298
QA QPA+ P+SGPNANPLDLFPQGLPN+GS A GAG+LDFLRNSQQFQALR MVQANP
Sbjct: 219 PQAAQPAS-VPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANP 277
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 358
QILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPVEGGEGN+LGQLA AMPQAVTVTPE
Sbjct: 278 QILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNILGQLAGAMPQAVTVTPE 337
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
ER+AIERLEAMGFDRA VLEV+FACNKNEELAANYLLDHMHEF++
Sbjct: 338 ERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 382
>gi|225452019|ref|XP_002283661.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 2 [Vitis
vinifera]
Length = 361
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 290/403 (71%), Positives = 318/403 (78%), Gaps = 42/403 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIE V G+DVYPA+QQMLIHQGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQGKVLKDATTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+VAE+SFVV+ML+K+KVS+ GAST SAAP +QAQ SS+PPTS QP+T Q AP VA
Sbjct: 61 ENQVAESSFVVIMLSKNKVSAGGASTTSAAPTSQAQPVSSSPPTSNQPSTAPQ--APVVA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P+ +PE PAPA AP SS SD+YGQAASNLVAG+NLE T+QQI
Sbjct: 119 LPEVIPE-----------------PAPAVAPSISSDSDIYGQAASNLVAGNNLEVTIQQI 161
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
LDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ PP AR A G A N P Q
Sbjct: 162 LDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEGPPAARPPASGLAVNLPTQA 221
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
Q P +SGPNANPLDLFPQGLP+MGSNA AGTLDFLRNS
Sbjct: 222 -PQGPQTTVASSGPNANPLDLFPQGLPSMGSNASAGTLDFLRNSP--------------- 265
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 360
QELGKQNPHLMRLIQEHQ DFLRLINEPVE GEGNVLGQL + +PQAVT+TPEER
Sbjct: 266 -----QELGKQNPHLMRLIQEHQADFLRLINEPVE-GEGNVLGQLGT-VPQAVTITPEER 318
Query: 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
E+IERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE+
Sbjct: 319 ESIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFEE 361
>gi|225423953|ref|XP_002282352.1| PREDICTED: putative DNA repair protein RAD23-3 [Vitis vinifera]
gi|297737829|emb|CBI27030.3| unnamed protein product [Vitis vinifera]
Length = 397
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 300/404 (74%), Positives = 325/404 (80%), Gaps = 8/404 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEI+VKPED V+DVK NIE VQGSDVYPASQQMLIHQGKVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIQVKPEDTVADVKANIEAVQGSDVYPASQQMLIHQGKVLKDGTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSF V++ SK +S + ++ A + P + +
Sbjct: 61 ENKVAENSF--VVVMLSKNKNSSEGSTASTAPAPAPAPAPTPIVKAPSASAPPPTTTSTL 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P A PP A PAPAPA PA VS + D YGQAASNLVAG+N E +QQI
Sbjct: 119 TAPQAPVVALPPPATVPAPAPAATPASTVTVVSET--DAYGQAASNLVAGNNFEEAIQQI 176
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
LDMGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VPPVARA A GQA NPPAQ+
Sbjct: 177 LDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVARAPASGQAANPPAQS 236
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANPQ 299
Q QP PAP+SGPNANPLDLFPQG+PN+GSN AGAGTLDFLRNSQQFQALR MVQANPQ
Sbjct: 237 Q--QPV-PAPSSGPNANPLDLFPQGIPNVGSNPAGAGTLDFLRNSQQFQALRAMVQANPQ 293
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 359
ILQPMLQELGKQNP LMRLIQEHQ DFLRLINEPVEGGEGN+LGQLA+AMPQAVTVTPEE
Sbjct: 294 ILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGGEGNILGQLAAAMPQAVTVTPEE 353
Query: 360 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
REAI RLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED
Sbjct: 354 REAIARLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 397
>gi|77745475|gb|ABB02636.1| RAD23-like [Solanum tuberosum]
Length = 384
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 290/403 (71%), Positives = 320/403 (79%), Gaps = 19/403 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKK+IETVQG DVYPA+QQMLIHQ KVLKD TTL+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKSIETVQGQDVYPAAQQMLIHQVKVLKDPTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVV+ML+K+KVS+SG S AP+N S QP T++ P TVA
Sbjct: 61 ENKVAENSFVVIMLSKNKVSTSGTSATQPAPSN-----------SAQPATSTGQPTQTVA 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P Q+ S P + ++ ++DVYGQAASNLVAGS LE TVQQI
Sbjct: 110 P-QATAASVAPAQSAPAPAPAPAPAPAPAPAAANPLTDVYGQAASNLVAGSTLETTVQQI 168
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
LDMGGGSW+R+TV+RALRAAYNNPERA+EYLYSGIPEQ +PP A S GQA NPP
Sbjct: 169 LDMGGGSWERDTVVRALRAAYNNPERAIEYLYSGIPEQAEIPPAAPVS--GQAVNPP--V 224
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
QA PA P + GPNANPLDLFPQGLPN+GSN GAG LDFL NS QFQALR MVQANPQI
Sbjct: 225 QASPPAVP--SGGPNANPLDLFPQGLPNVGSNVGAGNLDFLSNSPQFQALRAMVQANPQI 282
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 360
LQPMLQELGKQNP LMRLIQEHQ DFLRLINEPVE GEGNV GQ A A+PQAVTVTPEER
Sbjct: 283 LQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVE-GEGNVPGQPAGAIPQAVTVTPEER 341
Query: 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
EAIERLEAMGFDRALVL+VFFACNKNEE+AANYLLDHMHEF++
Sbjct: 342 EAIERLEAMGFDRALVLQVFFACNKNEEMAANYLLDHMHEFDE 384
>gi|356575536|ref|XP_003555896.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 2
[Glycine max]
Length = 399
Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust.
Identities = 292/404 (72%), Positives = 328/404 (81%), Gaps = 7/404 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAEN+F+V+ML+KSK +S ST S A + +A TS+ P ST P + + A
Sbjct: 61 ENKVAENTFIVIMLSKSKSTSGEGSTTSTALSTKAPQTSTVP-ASTPPVSVAPQAPAPAA 119
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P ++P+PAPAPAPAP + V S D+YGQAASNLVAGSNLE T+QQI
Sbjct: 120 TGALPASVTAPVSSPSPAPAPAPAPISSGTAVEGS--DIYGQAASNLVAGSNLEGTIQQI 177
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
LDMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ P VARA Q NPPA
Sbjct: 178 LDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADA 237
Query: 241 -QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 299
Q QPAA ++GPNANPLDLFPQ + AGAG+LDFLRNSQQFQALR MVQANPQ
Sbjct: 238 PQTAQPAA-VTSAGPNANPLDLFPQ--VAISGAAGAGSLDFLRNSQQFQALRAMVQANPQ 294
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 359
ILQPMLQELGKQNPHLMRLI++HQ DFLRLINEP EGGEGN+LGQ+AS MPQAVTVTPEE
Sbjct: 295 ILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGGEGNILGQMASGMPQAVTVTPEE 354
Query: 360 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
R+AIERLEAMGFDRA+VLEV+FACNKNEELAANYLLDHMHEFE+
Sbjct: 355 RQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEE 398
>gi|77999269|gb|ABB16981.1| unknown [Solanum tuberosum]
Length = 382
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 290/403 (71%), Positives = 320/403 (79%), Gaps = 21/403 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKK+IETVQG DVYPA+QQMLI GKVLKD TTLE
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKSIETVQGQDVYPAAQQMLIPPGKVLKDPTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVV+ML+K+KVS+SG S AP+N S QP T++ P TVA
Sbjct: 61 ENKVAENSFVVIMLSKNKVSTSGTSATQPAPSN-----------SAQPATSTGQPTQTVA 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P + +A A + ++ ++DVYGQAASNLVAGS LE TVQQI
Sbjct: 110 PQAT---AASVAPAQSAPAPAPAPAPAPAPAAANPLTDVYGQAASNLVAGSTLETTVQQI 166
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
LDMGGGSW+R+TV+RALRAAYNNPERA+EYLYSGIPEQ +PP A AS GQA NPP
Sbjct: 167 LDMGGGSWERDTVVRALRAAYNNPERAIEYLYSGIPEQAEIPPAAPAS--GQAVNPP--V 222
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
QA QPA P + GPNANPLDLFPQGLPN+GSN GAG LDFL NS QFQALR MVQANPQI
Sbjct: 223 QASQPAVP--SGGPNANPLDLFPQGLPNVGSNVGAGNLDFLSNSPQFQALRAMVQANPQI 280
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 360
LQPMLQELGKQNP LMRLIQEHQ DFLRLINEPVE GEGNV GQ A A+PQAVTVTPEER
Sbjct: 281 LQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVE-GEGNVPGQPAGAIPQAVTVTPEER 339
Query: 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
EAIERLEAMGFDRALVL+VFFAC KNEE+AANYLLDHMHEF++
Sbjct: 340 EAIERLEAMGFDRALVLQVFFACXKNEEMAANYLLDHMHEFDE 382
>gi|90657579|gb|ABD96879.1| hypothetical protein [Cleome spinosa]
Length = 383
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 293/407 (71%), Positives = 325/407 (79%), Gaps = 28/407 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V+DVKKNIETVQG+DVYP++QQMLIHQGKVL+D TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIETVQGADVYPSAQQMLIHQGKVLRDETTME 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAA--PANQAQTTSSAPPTSTQPTTTSQTPAPT 118
ENKVAE SF+V+ML+KS +S + +A+ P QA AP STQP+T+ QTPAP
Sbjct: 61 ENKVAEKSFIVIMLSKSSKPASSSGASTASAAPTTQA---PPAPLASTQPSTSPQTPAPV 117
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQ 178
A A + + +D+YGQAASNLVAGSNLEAT+Q
Sbjct: 118 -------------------AMPQAAPETAPAPAPAVTQTDIYGQAASNLVAGSNLEATIQ 158
Query: 179 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA-SAGGQAGNPP 237
QILDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VPPVA+A ++GGQ N
Sbjct: 159 QILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVAQAPASGGQPTN-- 216
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
QA Q A APTSGPNANPLDLFPQGLPN+GSN GAGTLDFLRNSQQFQALR MVQAN
Sbjct: 217 PPAQAGQQPAAAPTSGPNANPLDLFPQGLPNVGSNTGAGTLDFLRNSQQFQALRAMVQAN 276
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE-GNVLGQLASAMPQAVTVT 356
PQILQPMLQELGKQNP LMRLIQEHQ DFLRLINEPVEGGE GN+ QL AMPQA+ VT
Sbjct: 277 PQILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGGEGGNISSQLGGAMPQAIQVT 336
Query: 357 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
PEEREAIERLEAMGF+R LVLEVFFACNKNEELAANYLLDHMHEF++
Sbjct: 337 PEEREAIERLEAMGFERGLVLEVFFACNKNEELAANYLLDHMHEFDE 383
>gi|356575538|ref|XP_003555897.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 3
[Glycine max]
Length = 381
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 286/405 (70%), Positives = 318/405 (78%), Gaps = 27/405 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAEN+F+V+ML+K+ STV A S PP S P + +
Sbjct: 61 ENKVAENTFIVIMLSKT-------STVPA----------STPPVSVAPQAPAPAATGALP 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ P S+P PA + A SD+YGQAASNLVAGSNLE T+QQI
Sbjct: 104 ASVTAPVSSPSPAPAPAPAPISSGTA-------VEGSDIYGQAASNLVAGSNLEGTIQQI 156
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
LDMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ P VARA Q NPPA
Sbjct: 157 LDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADA 216
Query: 241 -QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQFQALRTMVQANP 298
Q QPAA ++GPNANPLDLFPQGLPN+GS A GAG+LDFLRNSQQFQALR MVQANP
Sbjct: 217 PQTAQPAA-VTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANP 275
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 358
QILQPMLQELGKQNPHLMRLI++HQ DFLRLINEP EGGEGN+LGQ+AS MPQAVTVTPE
Sbjct: 276 QILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGGEGNILGQMASGMPQAVTVTPE 335
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
ER+AIERLEAMGFDRA+VLEV+FACNKNEELAANYLLDHMHEFE+
Sbjct: 336 ERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEE 380
>gi|255576447|ref|XP_002529115.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223531394|gb|EEF33228.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 409
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 302/412 (73%), Positives = 334/412 (81%), Gaps = 12/412 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT F++EVKPED ++DVKK+IET QG+DVYPA QQMLI+QGKVLKD TT++
Sbjct: 1 MKIFVKTLKGTTFDVEVKPEDTIADVKKSIETTQGADVYPAGQQMLIYQGKVLKDNTTID 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTT----SSAPPTSTQPTTTSQTPA 116
ENKVAENSFVV+MLTK+K S+ ST S A +A T + APP P TS PA
Sbjct: 61 ENKVAENSFVVIMLTKNKSSTGEGSTASTASTTKAPQTIIPATIAPPA---PVPTSALPA 117
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEAT 176
P AP + + APAP PA APAPAPAP+ +++ DVYGQAASNLVAG+NLE
Sbjct: 118 PAPAPTPAAAPAPAAAPAPAPTPAAAPAPAPAPSAIAAQQGDVYGQAASNLVAGNNLEGA 177
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
+QQILDMGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VPPVA S GQA N
Sbjct: 178 IQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVAPVSLSGQAANQ 237
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-----TLDFLRNSQQFQALR 291
PAQ Q A P+ GPNANPLDLFPQGLPNMGS TLDFLRNSQQFQALR
Sbjct: 238 PAQPQQPAQPAAVPSGGPNANPLDLFPQGLPNMGSGGAGAGAGAGTLDFLRNSQQFQALR 297
Query: 292 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ 351
MVQANPQILQPMLQELGKQNP+L+RLIQEHQTDFLRLINEPVEGGEGN++GQLA+AMPQ
Sbjct: 298 AMVQANPQILQPMLQELGKQNPNLVRLIQEHQTDFLRLINEPVEGGEGNIMGQLAAAMPQ 357
Query: 352 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
AVTVTPEEREAIERLEAMGFDR LVLEVFFACNKNEELAANYLLDHMHEFED
Sbjct: 358 AVTVTPEEREAIERLEAMGFDRGLVLEVFFACNKNEELAANYLLDHMHEFED 409
>gi|15240922|ref|NP_198663.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|55976502|sp|Q84L30.2|RD23D_ARATH RecName: Full=Putative DNA repair protein RAD23-4; AltName:
Full=RAD23-like protein 4; Short=AtRAD23-4
gi|9758825|dbj|BAB09359.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|16648838|gb|AAL25609.1| unknown protein [Arabidopsis thaliana]
gi|19548081|gb|AAL87405.1| At5g38470/At5g38470 [Arabidopsis thaliana]
gi|21593157|gb|AAM65106.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|30409728|dbj|BAC76394.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735094|gb|ABG89117.1| Rad23-2 [synthetic construct]
gi|332006938|gb|AED94321.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 378
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 284/403 (70%), Positives = 315/403 (78%), Gaps = 26/403 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+K S SGAST SA PA P++TQP T VA
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASA-PA----------PSATQPQT--------VA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PQ P A P P A A APA +S +DVYGQAASNLVAG+ LE+TVQQI
Sbjct: 101 TPQ-----VSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQI 155
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
LDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A A G+ P
Sbjct: 156 LDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQ 215
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
Q A A T GPNANPL+LFPQG+P + AGAG LDFLRNSQQFQALR MVQANPQI
Sbjct: 216 PQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQQFQALRAMVQANPQI 275
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 360
LQPMLQELGKQNP L+RLIQEHQ DFLRLINEPVE GE NV+ QL +AMPQAVTVTPEER
Sbjct: 276 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE-GEENVMEQLEAAMPQAVTVTPEER 334
Query: 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
EAIERLE MGFDRA+VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct: 335 EAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377
>gi|14335004|gb|AAK59766.1| unknown protein [Arabidopsis thaliana]
Length = 378
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 283/403 (70%), Positives = 314/403 (77%), Gaps = 26/403 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+K S SGAST SA PA P++TQP T VA
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASA-PA----------PSATQPQT--------VA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PQ P A P P A A APA +S +DVYGQAASNLVAG+ LE+TVQQI
Sbjct: 101 TPQ-----VSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQI 155
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
LDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A A G+ P
Sbjct: 156 LDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQ 215
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
Q A A T GPNANPL+LFPQG+P + AGAG LDFLRNS QFQALR MVQANPQI
Sbjct: 216 PQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSHQFQALRAMVQANPQI 275
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 360
LQPMLQELGKQNP L+RLIQEHQ DFLRLINEPVE GE NV+ QL +AMPQAVTVTPEER
Sbjct: 276 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE-GEENVMEQLEAAMPQAVTVTPEER 334
Query: 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
EAIERLE MGFDRA+VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct: 335 EAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377
>gi|224111696|ref|XP_002315945.1| predicted protein [Populus trichocarpa]
gi|222864985|gb|EEF02116.1| predicted protein [Populus trichocarpa]
Length = 378
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 286/406 (70%), Positives = 308/406 (75%), Gaps = 31/406 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG+ F+IEVKP D V+DVKKNIET QG+ VYPA QQMLI+QGKVLKD TTL
Sbjct: 1 MKIFVKTLKGSTFDIEVKPGDTVADVKKNIETAQGASVYPAEQQMLIYQGKVLKDDTTLG 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSFVV+ML+K+K SS ST SAAP P T PT
Sbjct: 61 ENKVAENSFVVIMLSKAKSSSGEGSTTSAAPT---------PKVITLPT----------- 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
SVP AP A + + + S VYGQAASNLVAG+NLE VQQI
Sbjct: 101 ---SVPSPAP--APAPAPAPAPRSGFCSSSSSGFFKSGVYGQAASNLVAGNNLEGAVQQI 155
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
LDMGGGSWDR+TV+RALRAAYNNPERAVEYLY+GIPEQ PPVA+ QA PA
Sbjct: 156 LDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPPVAQVPVSEQA---PAAQ 212
Query: 241 QAQQPAAP--APTSGPNANPLDLFPQGLPNMGSNAG-AGTLDFLRNSQQFQALRTMVQAN 297
QQPA P P GPNANPLDLFPQGLPN+GS A AGTLDFLRNSQQFQALR MVQAN
Sbjct: 213 PRQQPAQPTTVPAGGPNANPLDLFPQGLPNIGSGAAEAGTLDFLRNSQQFQALRAMVQAN 272
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 357
PQILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPVEGGEGNV G LA+AMPQ+VTVTP
Sbjct: 273 PQILQPMLQELGKQNPHLMRLIQEHQDDFLRLINEPVEGGEGNVSGPLAAAMPQSVTVTP 332
Query: 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
EEREAIERL AMGFD ALVLEV+FACNKNEELAANYLLDH+HEFED
Sbjct: 333 EEREAIERLGAMGFDPALVLEVYFACNKNEELAANYLLDHIHEFED 378
>gi|297805910|ref|XP_002870839.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
gi|297316675|gb|EFH47098.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
Length = 377
Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust.
Identities = 285/405 (70%), Positives = 316/405 (78%), Gaps = 31/405 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL GT+FEIEVKP D VSDVKK IETV+G++ YPA +QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGTNFEIEVKPADTVSDVKKAIETVKGAE-YPAVKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAA--PANQAQTTSSAPPTSTQPTTTSQTPAPT 118
EN V ENSF+V+ML+K+KVSSSGAST SA A QAQT + T Q APT
Sbjct: 60 ENNVVENSFIVIMLSKTKVSSSGASTASAPAPSATQAQTVA-----------TPQVSAPT 108
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQ 178
V SVPE P A A APA ++ +DVYGQAASNLVAG+ LE+TVQ
Sbjct: 109 V----SVPE-----------PTSGTATAAAPAAAAAVQTDVYGQAASNLVAGTTLESTVQ 153
Query: 179 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 238
QILDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A + G+ P
Sbjct: 154 QILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPSTGEQPANPQ 213
Query: 239 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 298
Q A T GPNANPL+LFPQG+P + AGAG LDFLRNSQ+FQALR MVQANP
Sbjct: 214 AQPQQAAPVAA-TGGPNANPLNLFPQGMPAADAAAGAGNLDFLRNSQKFQALRAMVQANP 272
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 358
QILQPMLQELGKQNP L+RLIQEHQ DFLRLINEPVE GE NV+ QL +AMPQAVTVTPE
Sbjct: 273 QILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE-GEENVMEQLEAAMPQAVTVTPE 331
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
EREAIERLEAMGFDRA+VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct: 332 EREAIERLEAMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 376
>gi|1914683|emb|CAA72741.1| RAD23, isoform I [Daucus carota]
Length = 382
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 280/403 (69%), Positives = 316/403 (78%), Gaps = 22/403 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK++VKTLKG+ FEI+V P+D V+DVK++IET QG+ VYPA+QQMLI+QGKVLKD TTL
Sbjct: 1 MKIYVKTLKGSQFEIQVNPDDSVADVKRSIETAQGAAVYPAAQQMLIYQGKVLKDGTTLL 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN VAENSF+V+ML+KSK S ST S A A +A TS APP+ PAP V+
Sbjct: 61 ENNVAENSFIVIMLSKSKSPSGEGSTTSTAAAPKAPQTS-APPS---------VPAPAVS 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P P S P PAP+PAPAPA AP P+ S ++VY AAS LVAGSNLE +QQI
Sbjct: 111 QP---PASTLP--VPAPSPAPAPATAPIPSAAVGSEANVYDSAASLLVAGSNLEGAIQQI 165
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
LDMGGG+WDR+TVIR +RAA+NNPERAVEYLYSGIPEQ PPVA + GQA NP Q
Sbjct: 166 LDMGGGTWDRDTVIRIVRAAFNNPERAVEYLYSGIPEQAEAPPVAPSPPSGQAANPLDQP 225
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANPQ 299
A APA PNANPLDLFPQGLP+MGSN AGAG LDFLR +QQFQALR MVQ+NPQ
Sbjct: 226 PAAAQPAPASAG-PNANPLDLFPQGLPDMGSNAAGAGNLDFLRTNQQFQALRAMVQSNPQ 284
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 359
ILQPMLQELGKQNPHLMRLIQEHQ DFL+LINEP+EGGE N+LG PQA++VTPEE
Sbjct: 285 ILQPMLQELGKQNPHLMRLIQEHQADFLQLINEPMEGGE-NLLGH----GPQAISVTPEE 339
Query: 360 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 402
R+AIERLEAMGFDR LVLEVFFACNKNEELAANYLLDHMHEFE
Sbjct: 340 RDAIERLEAMGFDRELVLEVFFACNKNEELAANYLLDHMHEFE 382
>gi|388499022|gb|AFK37577.1| unknown [Lotus japonicus]
Length = 376
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 266/404 (65%), Positives = 307/404 (75%), Gaps = 29/404 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHF+I+V +D V+DVKK IE QG+ VYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN VAE+SFVV+ML+K+KVSSSGAST +AA ++ P S+ P T+S PT A
Sbjct: 61 ENNVAEDSFVVIMLSKNKVSSSGASTAAAA---PPNPVTAPQPASSVPPTSSTPEPPTSA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
Q S +P P +++VS VYGQAASNL+AGSN++ TVQQI
Sbjct: 118 VGQGASNSEQ---------------SPVITPPTAAVSSVYGQAASNLIAGSNVDPTVQQI 162
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
L+MGGGSWDR+TVIRALRAAYNNPERAVEYLYSGIPEQ VP VAR+ + GQA NP +
Sbjct: 163 LEMGGGSWDRDTVIRALRAAYNNPERAVEYLYSGIPEQADVPAVARSPSVGQAENPSVR- 221
Query: 241 QAQQPAAPA-PTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 299
P PA PT GPN NPL+LFPQG+PNMG+ AG LDFLRN+QQFQALR MVQANPQ
Sbjct: 222 ----PPQPAVPTGGPNTNPLNLFPQGIPNMGAEDNAGDLDFLRNNQQFQALRAMVQANPQ 277
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 359
ILQPMLQELGKQNPHLM+LIQEHQ+DFL LINEP EG E LA+ M QA+TVTPEE
Sbjct: 278 ILQPMLQELGKQNPHLMQLIQEHQSDFLNLINEP-EGEE----NPLAAGMTQAITVTPEE 332
Query: 360 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
EAI+RLE MGFDR LVLEVF ACN+NE+LAANYLLDH +EF+D
Sbjct: 333 DEAIQRLEDMGFDRDLVLEVFIACNRNEDLAANYLLDHQNEFDD 376
>gi|115479081|ref|NP_001063134.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|55976306|sp|Q40742.2|RAD23_ORYSJ RecName: Full=Probable DNA repair protein RAD23; AltName:
Full=OsRAD23
gi|51091502|dbj|BAD36240.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|51091558|dbj|BAD36295.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113631367|dbj|BAF25048.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|125563673|gb|EAZ09053.1| hypothetical protein OsI_31314 [Oryza sativa Indica Group]
gi|125605644|gb|EAZ44680.1| hypothetical protein OsJ_29306 [Oryza sativa Japonica Group]
Length = 392
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 255/407 (62%), Positives = 300/407 (73%), Gaps = 23/407 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+ F+IEV KV+DVK+ IET QG +YPA QQMLIHQGKVLKD TTL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT-TSQTPAPTV 119
ENKV ENSF+V+ML + K SSS A S AP+NQ APPT T P SQ P V
Sbjct: 61 ENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQ------APPTQTVPAAPASQAP---V 111
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
AP +VP + AP P +PAPA SS +D YGQA SNLVAGSNLEAT+Q
Sbjct: 112 APATTVPVT-------VSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQS 164
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
IL+MGGG WDR+ V+ AL AA+NNPERAVEYLYSG+PEQ + PV S Q NP
Sbjct: 165 ILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDI-PVPPPSI--QPANPTQA 221
Query: 240 TQAQQPAAPAP-TSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQAN 297
+QA QPAAP+ +SGPNA+PLDLFPQ LPN ++ AG G LD LRN+ QF+ L ++VQAN
Sbjct: 222 SQATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQAN 281
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-GEGNVLGQLASAMPQAVTVT 356
PQILQP+LQELGKQNP +++LIQE+Q +FL LINEP EG E N+L Q AMPQ + VT
Sbjct: 282 PQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVT 341
Query: 357 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
PEE EAI RLEAMGFDRALVL+VFFACNK+E+LAANYLLDHM+EF+D
Sbjct: 342 PEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388
>gi|1488297|gb|AAB65841.1| osRAD23 [Oryza sativa Japonica Group]
Length = 392
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 254/407 (62%), Positives = 298/407 (73%), Gaps = 23/407 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+ F+IEV KV+DVK+ IET QG +YPA QQMLIHQGKVLKD TTL+
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT-TSQTPAPTV 119
ENKV ENSF+V+ML + K SSS A S AP+NQ APPT T P SQ P V
Sbjct: 61 ENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQ------APPTQTVPAAPASQAP---V 111
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
AP +VP + AP P +PAPA SS +D YGQA SNLVAGSNLEAT+Q
Sbjct: 112 APATTVPVT-------VSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQS 164
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
IL+MGGG WDR+ V+ AL AA+NNPERAVEYLYSG+PEQ + PV S Q NP
Sbjct: 165 ILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDI-PVPPPSI--QPANPTQA 221
Query: 240 TQAQQPAAPAP-TSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQAN 297
+QA QPAAP+ +SGPNA+PLDLFPQ LPN ++ AG G LD LRN+ QF+ L ++VQAN
Sbjct: 222 SQATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQAN 281
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-GEGNVLGQLASAMPQAVTVT 356
PQILQP+LQELGKQNP +++LIQE+Q +FL LINEP EG E N+L Q AMPQ + VT
Sbjct: 282 PQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVT 341
Query: 357 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
PEE EAI RLE MGFDRALVL+VFFACNK+E+LAANYLLDHM+EF D
Sbjct: 342 PEEDEAILRLEPMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFAD 388
>gi|116787088|gb|ABK24371.1| unknown [Picea sitchensis]
Length = 390
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/412 (59%), Positives = 298/412 (72%), Gaps = 31/412 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEI+ +P D V VKK IE +QG D YP QQ+LIHQGKVLKD TT+E
Sbjct: 1 MKLSVKTLKGNRFEIDAQPNDTVMAVKKQIEEIQGKDTYPCGQQLLIHQGKVLKDDTTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+N++ EN F+VVMLTK+K SS+ ++ +++ + T +S P +A
Sbjct: 61 DNQITENGFLVVMLTKTKTSSAAGASSTSSASTIQHTQTSTP----------------LA 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSV---SDVYGQAASNLVAGSNLEATV 177
P + E+A P + PA APA + AP +++V +D YG+AAS LVAGSNLE T+
Sbjct: 105 PASNPVEAASPVVSQPPAVAPATS---VSAPETTAVQANADPYGEAASILVAGSNLEQTI 161
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARA-----SAGG 231
QQ+LDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPE + PVAR+ A G
Sbjct: 162 QQMLDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPETAEIAVPVARSPPSNSGAAG 221
Query: 232 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 291
Q N ++ A P+ GPNA PL+LFPQGLPN+G+ AG G LDFLRN+ QFQALR
Sbjct: 222 QGTNDVVAAESDLAQATVPSGGPNAAPLNLFPQGLPNLGATAGGGALDFLRNNPQFQALR 281
Query: 292 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ 351
TMVQANPQILQPMLQEL KQNP LMRLIQ+HQ +FL LINE EG++LGQ A+ MPQ
Sbjct: 282 TMVQANPQILQPMLQELSKQNPQLMRLIQDHQAEFLHLINEET---EGDLLGQFAAEMPQ 338
Query: 352 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
++ VTPEEREAIERLEAMGFDRALV+E F AC+KNEELAANYLL+H ++ED
Sbjct: 339 SINVTPEEREAIERLEAMGFDRALVIEAFLACDKNEELAANYLLEHAADYED 390
>gi|357124588|ref|XP_003563980.1| PREDICTED: putative DNA repair protein RAD23-3-like [Brachypodium
distachyon]
Length = 413
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 265/419 (63%), Positives = 311/419 (74%), Gaps = 24/419 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT+FEIE PE V++VK+ IE QG +VYPA QQMLIHQGK+LKD TTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIEGAQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQ-TTSSAPPTSTQPTT-TSQTPAPT 118
N VAENSF+V+ML+K+K S SG ST S AP QAQ T A T + P T ++TP T
Sbjct: 61 GNNVAENSFLVIMLSKAKASPSGPSTASKAPTIQAQPATPVAAATPSGPATPVARTPPST 120
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQ 178
P S E APP A P PA + PA A +S +DVY QAASNLV+G +LE TVQ
Sbjct: 121 A--PVSASELAPPSAQP-----PAGSDIPAAAVTASGDADVYSQAASNLVSGGSLEQTVQ 173
Query: 179 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-AVPPVARASAGGQAGNPP 237
ILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE A P + QA NP
Sbjct: 174 HILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEAPPVARAPAPVQQATNPQ 233
Query: 238 AQTQAQ-----QPAAPAPTSGPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQ 286
A +QA QP+ A ++GPNANPL+LFPQG+P GSN AGAG LD LR Q
Sbjct: 234 ALSQAAPVPPVQPSGVA-SAGPNANPLNLFPQGVPTGGSNPGAGVGAGAGALDALRALPQ 292
Query: 287 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE-PVEGGEGNVLGQL 345
FQAL +VQANPQILQPMLQELGKQNP ++RLIQE+Q +FLRL+NE P G GN+LGQL
Sbjct: 293 FQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPESGAAGNILGQL 352
Query: 346 ASAMPQ-AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
A+AMPQ AVTVTPEERE+I+RLEAMGF+R LVLEVFFACN++EELAANYLLDH HE+ED
Sbjct: 353 AAAMPQAAVTVTPEERESIQRLEAMGFNRELVLEVFFACNRDEELAANYLLDHGHEYED 411
>gi|197717669|gb|ACH72675.1| RAD23 [Pinus sylvestris var. mongolica]
Length = 390
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 251/410 (61%), Positives = 295/410 (71%), Gaps = 27/410 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEIE +P D V VKK IE +QG D YP QQ+LIHQGKVLKD TT+E
Sbjct: 1 MKLSVKTLKGNRFEIEAQPNDTVMAVKKQIEEIQGKDTYPCGQQLLIHQGKVLKDDTTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS-GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+N + EN F+VVMLTKSK SS+ GAS+ S A ++ QPT TS PAP
Sbjct: 61 DNTITENGFLVVMLTKSKTSSAVGASSTSTA-------------STVQPTQTSTPPAPAS 107
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
P E A P + PA APA + + + +D YG+AAS LVAGSNLE T+QQ
Sbjct: 108 NPV----EVASPVVSQLPAVAPAASVSAPETTAVQANADPYGEAASILVAGSNLEQTIQQ 163
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARA-----SAGGQA 233
+LDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPE + PVAR+ A Q
Sbjct: 164 MLDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPETAEIAVPVARSPPSNPGATDQG 223
Query: 234 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 293
N ++ A AP+ GPNA PL+LFPQGLPN+G+ AG G LDFLRN+ QFQALRTM
Sbjct: 224 TNNVIAGESDSAEATAPSGGPNAAPLNLFPQGLPNLGAAAGGGALDFLRNNPQFQALRTM 283
Query: 294 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAV 353
VQANPQILQPMLQEL KQNP LMRLIQ+HQ +FL LINE +G++LGQ A+ MPQ++
Sbjct: 284 VQANPQILQPMLQELSKQNPQLMRLIQDHQAEFLHLINEET---DGDLLGQFAAEMPQSI 340
Query: 354 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
VTPEEREAIERLEAMGFDRALV+E F AC+KNEELAANYLL+H ++ED
Sbjct: 341 NVTPEEREAIERLEAMGFDRALVIEAFLACDKNEELAANYLLEHAADYED 390
>gi|357158333|ref|XP_003578094.1| PREDICTED: probable DNA repair protein RAD23-like isoform 1
[Brachypodium distachyon]
Length = 395
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 247/406 (60%), Positives = 296/406 (72%), Gaps = 18/406 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV P DKVSDVKK IE+ QG +VYPA QQMLIHQG VLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFQIEVNPADKVSDVKKLIESSQGQNVYPADQQMLIHQGTVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E+KV EN+F+V+ML ++K SSS A S P+NQ APPT T P + P+
Sbjct: 61 ESKVLENNFLVIMLRQNKGSSSAAPAKSKEPSNQ------APPTQTVP---ANPPSQAPV 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P +AP P P AP P +PA A S+ ++ YGQAASNLVAG NLEAT+Q I
Sbjct: 112 VPAPPAAAAPAPIVPISAPTPTATASPASAVAVSTEAETYGQAASNLVAGGNLEATIQSI 171
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
L+MGGG+WDR+TV+RALRAA+NNPERAVEYLYSGIPE +P ++
Sbjct: 172 LEMGGGTWDRDTVLRALRAAFNNPERAVEYLYSGIPEPMEIPAPPPSAQPA------DPV 225
Query: 241 QAQQPAAPA-PTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANP 298
QA Q PA +SGPNA+PLDLFPQ LPN +N AG G LD LRN+ QF++L ++VQANP
Sbjct: 226 QALQATQPAVASSGPNASPLDLFPQALPNASANAAGEGNLDVLRNNAQFRSLLSLVQANP 285
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG-NVLGQLASAMPQAVTVTP 357
QILQP+LQELGKQNP +++LIQ++Q +FLRLINEP EG E N+L Q A +PQ + VTP
Sbjct: 286 QILQPLLQELGKQNPQILQLIQDNQAEFLRLINEPAEGDEDENLLDQFAEGVPQTIAVTP 345
Query: 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
EE EAI RLE MGFDRALVLEV+FACNK+E LAANYLLDHM+EF+D
Sbjct: 346 EENEAILRLEGMGFDRALVLEVYFACNKDETLAANYLLDHMNEFDD 391
>gi|224284592|gb|ACN40029.1| unknown [Picea sitchensis]
Length = 403
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 258/425 (60%), Positives = 298/425 (70%), Gaps = 44/425 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG HF+IEV+P D V +VKK IE VQG+ YP+ QQ+LI+QGKVLKD TT+E
Sbjct: 1 MKVSVKTLKGNHFDIEVQPTDTVLNVKKQIEQVQGAQTYPSEQQLLIYQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+F+VVML+K+K +++G S+ T APP S +PAP
Sbjct: 61 ENKVTENTFLVVMLSKTKATTAGTSS-----------TQQAPP--------SVSPAPA-- 99
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
V AA + APA A A A + + +DVYGQAASNLVAG+NLE +QQI
Sbjct: 100 -QNPVAPVPAAAAAQLSSLAPATATPTAGAGTTQTDADVYGQAASNLVAGNNLEHVIQQI 158
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-PPVAR-----ASAGGQAG 234
LDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSGIPE V PPVAR A
Sbjct: 159 LDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPETAEVAPPVARPTPSVGQAANPTA 218
Query: 235 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL---------------- 278
PA A A+ +GPNA PLDLFPQGLPN+G+ AGAG
Sbjct: 219 PAPAAAAAAAAASATAQAGPNAAPLDLFPQGLPNLGAGAGAGAGAGLGAGAGAGAGAGAL 278
Query: 279 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 338
DFLRN+ QFQALRTMVQANPQILQPMLQEL KQNP LMRLIQ+HQ DFLRL+NEPVEG E
Sbjct: 279 DFLRNNPQFQALRTMVQANPQILQPMLQELSKQNPQLMRLIQDHQADFLRLVNEPVEGAE 338
Query: 339 GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 398
G+ QLA AMPQA+ VTPEEREAIERLEAMGFDRALV+E F AC+KNE+LAANYLL+H
Sbjct: 339 GDFFNQLAGAMPQAINVTPEEREAIERLEAMGFDRALVIEAFLACDKNEQLAANYLLEHA 398
Query: 399 HEFED 403
++ED
Sbjct: 399 GDYED 403
>gi|226500270|ref|NP_001142065.1| uncharacterized protein LOC100274222 [Zea mays]
gi|194706976|gb|ACF87572.1| unknown [Zea mays]
gi|413954953|gb|AFW87602.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 254/415 (61%), Positives = 302/415 (72%), Gaps = 25/415 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST + A A +AP + T AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPV-- 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ E+APP P APA A ++ +DVY QAASNLV+G+NLE T+QQI
Sbjct: 119 ---ATAETAPPSVQPQAAPAATVA--------ATDDADVYSQAASNLVSGNNLEQTIQQI 167
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----P 236
LDMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE PVARA A GQ N
Sbjct: 168 LDMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAAS 227
Query: 237 PAQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQFQA 289
PAQ P P+P S GPNANPL+LFPQG+P+ GSN AG+G LD LR QFQA
Sbjct: 228 PAQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALRQLPQFQA 287
Query: 290 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASA 348
L +VQANPQILQPMLQELGKQNP ++RLIQE+Q +FLRL+NE EGG GN+LGQLA+A
Sbjct: 288 LLQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPEGGPGGNILGQLAAA 347
Query: 349 MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+PQ +TVTPEEREAI+RLE MGF+R LVLEVFFACNK+EEL ANYLLDH HEF++
Sbjct: 348 VPQTLTVTPEEREAIQRLEGMGFNRELVLEVFFACNKDEELTANYLLDHGHEFDE 402
>gi|125554823|gb|EAZ00429.1| hypothetical protein OsI_22453 [Oryza sativa Indica Group]
Length = 413
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 271/433 (62%), Positives = 313/433 (72%), Gaps = 52/433 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT+FEIE PE V++VK+ IE+ QG +VYPA QQMLIHQGK+LKD TTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
NKVAENSF+V+ML+K+K SSSGAST S AP +Q+Q TP +VA
Sbjct: 61 GNKVAENSFLVIMLSKAKASSSGASTASKAPVSQSQPA---------------TPVASVA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPA--------------PAPAPVSSSVSDVYGQAASN 166
PPP AP P PAP A PA A +SS +DVY QAASN
Sbjct: 106 -------RTPPPQAPVVTPEPAPPSAQPPVASATPAAAATPAAAVTASSDADVYSQAASN 158
Query: 167 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVA 225
LV+GSNLE T+QQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE P PVA
Sbjct: 159 LVSGSNLEQTIQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEPPQPVA 218
Query: 226 RASAGGQAGNPPAQTQAQQPAAPAP-----TSGPNANPLDLFPQGLPNMGSN-------- 272
RA A Q GNP +QAQ P SGPNANPL+LFPQG+P+ GSN
Sbjct: 219 RAPAAVQQGNPQVPSQAQAAPPPPVQPAGGASGPNANPLNLFPQGIPSAGSNPGAAAGAG 278
Query: 273 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 332
AGAG LD LR QFQAL +VQANPQILQPMLQELGKQNP ++RLIQE+Q +FLRL+NE
Sbjct: 279 AGAGALDALRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNE 338
Query: 333 PVEGGE--GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 390
+ G GN+LGQLA+AMPQA+TVTPEEREAI+RLEAMGF+R LVLEVFFACNK+EELA
Sbjct: 339 SPDSGTAGGNILGQLAAAMPQALTVTPEEREAIQRLEAMGFNRELVLEVFFACNKDEELA 398
Query: 391 ANYLLDHMHEFED 403
ANYLLDH HEFED
Sbjct: 399 ANYLLDHGHEFED 411
>gi|115467470|ref|NP_001057334.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|53793157|dbj|BAD54365.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|53793163|dbj|BAD54370.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113595374|dbj|BAF19248.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|125596775|gb|EAZ36555.1| hypothetical protein OsJ_20893 [Oryza sativa Japonica Group]
gi|215692584|dbj|BAG88004.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 413
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 271/433 (62%), Positives = 313/433 (72%), Gaps = 52/433 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGT+FEIE PE V++VK+ IE+ QG +VYPA QQMLIHQGK+LKD TTLE
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
NKVAENSF+V+ML+K+K SSSGAST S AP +Q+Q TP +VA
Sbjct: 61 GNKVAENSFLVIMLSKAKASSSGASTASKAPVSQSQPA---------------TPVASVA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPA--------------PAPAPVSSSVSDVYGQAASN 166
PPP AP P PAP A PA A +SS +DVY QAASN
Sbjct: 106 -------RTPPPQAPVVTPEPAPPSAQPPVASATPAAAATPAAAVTASSDADVYSQAASN 158
Query: 167 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVA 225
LV+GSNLE T+QQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE P PVA
Sbjct: 159 LVSGSNLEQTIQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEPPQPVA 218
Query: 226 RASAGGQAGNPPAQTQAQQPAAPAP-----TSGPNANPLDLFPQGLPNMGSN-------- 272
RA A Q GNP +QAQ P SGPNANPL+LFPQG+P+ GSN
Sbjct: 219 RAPAAVQQGNPQVPSQAQAAPPPPVQPAGGASGPNANPLNLFPQGIPSAGSNPGAAAGAG 278
Query: 273 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 332
AGAG LD LR QFQAL +VQANPQILQPMLQELGKQNP ++RLIQE+Q +FLRL+NE
Sbjct: 279 AGAGALDALRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNE 338
Query: 333 PVEGGE--GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 390
+ G GN+LGQLA+AMPQA+TVTPEEREAI+RLEAMGF+R LVLEVFFACNK+EELA
Sbjct: 339 SPDSGAAGGNILGQLAAAMPQALTVTPEEREAIQRLEAMGFNRELVLEVFFACNKDEELA 398
Query: 391 ANYLLDHMHEFED 403
ANYLLDH HEFED
Sbjct: 399 ANYLLDHGHEFED 411
>gi|30409726|dbj|BAC76393.1| RAD23-like protein [Arabidopsis thaliana]
Length = 337
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 251/408 (61%), Positives = 275/408 (67%), Gaps = 76/408 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDS-------------------------------------- 22
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
VV + K+ S GA PA + + T T TP P
Sbjct: 23 ----------VVDVKKNIESVQGADVY---PAAKQMLIHQGKVLKDETTETVTTPIPE-- 67
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P PA + PAP APV S DVYGQAASNL AGSNLE+T+QQI
Sbjct: 68 --------------PVPATISSSTPAPDSAPVGSQ-GDVYGQAASNLAAGSNLESTIQQI 112
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA-SAGGQAGNPPAQ 239
LDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+GIPEQ VPPVAR ++ GQ NPPAQ
Sbjct: 113 LDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPANPPAQ 172
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 299
TQ QPAA AP SGPNANPLDLFPQGLPN+G N GAGTLDFLRNSQQFQALR MVQANPQ
Sbjct: 173 TQ--QPAA-APASGPNANPLDLFPQGLPNVGGNPGAGTLDFLRNSQQFQALRAMVQANPQ 229
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGNVLGQLASAM--PQAVTV 355
+LQPMLQELGKQNP+LMRLIQ+HQ DFLRLINEPVEGG GN+LGQ+A+ M PQA+ V
Sbjct: 230 VLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQV 289
Query: 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
T EEREAIERLEAMGF+RALVLEVFFACNKNEELAANYLLDHMHEFE+
Sbjct: 290 THEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 337
>gi|30409730|dbj|BAC76395.1| RAD23-like protein [Arabidopsis thaliana]
Length = 343
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 255/403 (63%), Positives = 284/403 (70%), Gaps = 61/403 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+K S SGAST SA PA P++TQP T VA
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASA-PA----------PSATQPQT--------VA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PQ P A P P A A APA +S +DVYGQAASNLVAG+ LE+TVQQI
Sbjct: 101 TPQ-----VSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQI 155
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
LDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A A G+ P
Sbjct: 156 LDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQ 215
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
Q A A T GPNANPL+LFPQG+P + AGAG LDFLRNSQQFQALR MVQANPQI
Sbjct: 216 PQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQQFQALRAMVQANPQI 275
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 360
LQPMLQE QL +AMPQAVTVTPEER
Sbjct: 276 LQPMLQE------------------------------------QLEAAMPQAVTVTPEER 299
Query: 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
EAIERLE MGFDRA+VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct: 300 EAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 342
>gi|195636354|gb|ACG37645.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 251/415 (60%), Positives = 299/415 (72%), Gaps = 25/415 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST +AA A +AP +
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTTTAAKAPATLAQPAAPVPPAASVART-------- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P AP A P+ P APA ++ +DVY QAASNLV+G++LE T+QQI
Sbjct: 113 -----PTQAPVATAETAPPSAQPQAAPAATVAATDDADVYSQAASNLVSGNSLEQTIQQI 167
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----P 236
LDMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE PVARA A GQ N
Sbjct: 168 LDMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAAS 227
Query: 237 PAQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQFQA 289
PAQ P P+P S GPNANPL+LFPQG+P+ GSN AG+G LD LR QFQA
Sbjct: 228 PAQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVIPGAGSGALDALRQLPQFQA 287
Query: 290 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASA 348
L +VQANPQILQPMLQELGKQNP ++RLIQE+Q +FLRL+NE EGG GN+LGQLA+A
Sbjct: 288 LLQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPEGGPGGNILGQLAAA 347
Query: 349 MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+PQ +TVTPEEREAI+RLE MGF+R LVLEVFFACNK+EEL ANYLLDH HEF++
Sbjct: 348 VPQTLTVTPEEREAIQRLEGMGFNRELVLEVFFACNKDEELTANYLLDHGHEFDE 402
>gi|449530301|ref|XP_004172134.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 253/383 (66%), Positives = 294/383 (76%), Gaps = 20/383 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG+HFEIEV+P D V+DVKKNIETVQG+DVYPA+QQMLIHQGKVLKD +TLE
Sbjct: 1 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVS-AAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
ENKVAENSF+V+MLTK+K SS G S+ + AAP +A S+AP + P +T++ P PT
Sbjct: 61 ENKVAENSFIVIMLTKNKSSSGGTSSTTHAAPVAKA-PQSTAPAPAATPVSTTEVPLPTS 119
Query: 120 APPQSV-----------PESAPPPAAPAPAPAPAPAPAPAPAPVSSSV---SDVYGQAAS 165
APP SV P P PA A ++++V +DVY QAAS
Sbjct: 120 APPASVTASSPPAPSPTPVPVPAPAPAPTPTPTPTPAAAPAPSLATTVLPDADVYSQAAS 179
Query: 166 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 225
NLVAGSNLE TVQQILDMG G WDR+TV+RALRAAYNNPERAV+YLYSGIPEQ PP A
Sbjct: 180 NLVAGSNLEETVQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIPEQVEAPP-A 238
Query: 226 RASAGGQAGN-PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRN 283
R + QA N Q QPA+ ++GPNANPLDLFPQGLPN+GS A G+G+LDFLRN
Sbjct: 239 RVPSTVQASNPSAQPAQPAQPASAPSSTGPNANPLDLFPQGLPNLGSGAVGSGSLDFLRN 298
Query: 284 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG 343
S QFQALR MV+ANPQILQPMLQELGKQNP L+RLIQ+HQ DFLRLINEP+E GEGN+LG
Sbjct: 299 SPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLE-GEGNILG 357
Query: 344 QLASAMPQAVTVTPEEREAIERL 366
QLA AMPQA+TVTPEEREAI+R+
Sbjct: 358 QLAEAMPQAITVTPEEREAIQRV 380
>gi|449434628|ref|XP_004135098.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 253/383 (66%), Positives = 294/383 (76%), Gaps = 20/383 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG+HFEIEV+P D V+DVKKNIETVQG+DVYPA+QQMLIHQGKVLKD +TLE
Sbjct: 1 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVS-AAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
ENKVAENSF+V+MLTK+K SS G S+ + AAP +A S+AP + P +T++ P PT
Sbjct: 61 ENKVAENSFIVIMLTKNKSSSGGTSSTTHAAPVAKA-PQSTAPAPAATPVSTTEVPLPTS 119
Query: 120 APPQSV-----------PESAPPPAAPAPAPAPAPAPAPAPAPVSSSV---SDVYGQAAS 165
APP SV P P PA A ++++V +DVY QAAS
Sbjct: 120 APPASVTASSPPAPSPTPVPVPAPAPAPTPTPTPTPAAAPAPSLATTVLPDADVYSQAAS 179
Query: 166 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 225
NLVAGSNLE TVQQILDMG G WDR+TV+RALRAAYNNPERAV+YLYSGIPEQ PP A
Sbjct: 180 NLVAGSNLEETVQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIPEQVEAPP-A 238
Query: 226 RASAGGQAGN-PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRN 283
R + QA N Q QPA+ ++GPNANPLDLFPQGLPN+GS A G+G+LDFLRN
Sbjct: 239 RVPSTVQASNPSAQPAQPAQPASAPSSTGPNANPLDLFPQGLPNLGSGAVGSGSLDFLRN 298
Query: 284 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG 343
S QFQALR MV+ANPQILQPMLQELGKQNP L+RLIQ+HQ DFLRLINEP+E GEGN+LG
Sbjct: 299 SPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLE-GEGNILG 357
Query: 344 QLASAMPQAVTVTPEEREAIERL 366
QLA AMPQA+TVTPEEREAI+R+
Sbjct: 358 QLAEAMPQAITVTPEEREAIQRV 380
>gi|90657662|gb|ABD96960.1| hypothetical protein [Cleome spinosa]
Length = 435
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/251 (86%), Positives = 231/251 (92%), Gaps = 4/251 (1%)
Query: 155 SVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 214
S +DVYGQAASNLVAGSNLEA +QQILDMGGGSWDR+TV+RALRAAYNNPERAVEYLYSG
Sbjct: 187 SETDVYGQAASNLVAGSNLEAIIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSG 246
Query: 215 IPEQTAVPPVARA-SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 273
IPEQ VPPV R ++GGQ NPPAQ+Q QQPA APTSGPNANPLDLFPQGLPN+GSN
Sbjct: 247 IPEQAEVPPVTRPPASGGQPTNPPAQSQ-QQPAV-APTSGPNANPLDLFPQGLPNVGSNT 304
Query: 274 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 333
GAGTLDFLRNSQQFQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEP
Sbjct: 305 GAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEP 364
Query: 334 VEGGE-GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 392
VEGGE GN++ QLA +PQA+ VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN
Sbjct: 365 VEGGEGGNIINQLAGGVPQAIQVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 424
Query: 393 YLLDHMHEFED 403
YLLDH+HEF++
Sbjct: 425 YLLDHIHEFDE 435
>gi|357147838|ref|XP_003574508.1| PREDICTED: probable DNA repair protein RAD23-like [Brachypodium
distachyon]
Length = 394
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 242/408 (59%), Positives = 290/408 (71%), Gaps = 26/408 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KTLKG+ FEIEV P KV D+KK IE QG +VYPA QQMLIHQG VLK+ TTLE
Sbjct: 1 MKVSIKTLKGSSFEIEVDPTSKVVDLKKLIENTQGQNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+F+V+ML+K K S+S AS + P Q +AP VA
Sbjct: 61 ENKVLENNFIVIMLSK-KGSTSAASGTAKEPTKQPMVDRAAP----------------VA 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVS-----DVYGQAASNLVAGSNLEA 175
P +P + P P AP P PA +++ + D YGQAAS+LVAGSNLE
Sbjct: 104 PAMQLP-AEQTPVTPVSAPVPTALAVAPPAATAAAAAASTQADPYGQAASSLVAGSNLEG 162
Query: 176 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 235
TVQ IL+MGGG+WDR+TV+ ALRAA+NNPERAVEYLY+G+PEQ A P A GQ G+
Sbjct: 163 TVQSILEMGGGAWDRDTVVHALRAAFNNPERAVEYLYTGVPEQEAPAPAQEPPALGQQGD 222
Query: 236 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 295
P Q+QQ A +SGPNANPLDLFPQ LPN +NA G LD LRN+ QF+ L ++VQ
Sbjct: 223 PVQAPQSQQAVA---SSGPNANPLDLFPQVLPNASANAAGGNLDVLRNNSQFRGLLSLVQ 279
Query: 296 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTV 355
ANPQILQP+LQELGKQNP +++LIQE+Q +FLRLINEP EG EGN+L Q + +PQ V V
Sbjct: 280 ANPQILQPLLQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGNLLEQFGAGVPQTVAV 339
Query: 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
TP E EAI+RLE MGFDR LVLEVFFACNK+E+LAANYLLDHM+EF+D
Sbjct: 340 TPAENEAIQRLEHMGFDRDLVLEVFFACNKDEQLAANYLLDHMNEFDD 387
>gi|194700232|gb|ACF84200.1| unknown [Zea mays]
gi|195625372|gb|ACG34516.1| DNA repair protein RAD23 [Zea mays]
gi|414885362|tpg|DAA61376.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 386
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 251/405 (61%), Positives = 292/405 (72%), Gaps = 30/405 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SSS AAPA T + AP T T P T QT A A
Sbjct: 61 ENQVVENNFLVIMLRQNKGSSS------AAPAKV--TANQAPSTQTVPATPPQTSA---A 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P AP P P APA + APA S+ +D YGQA SNLVAGSNLE T++ I
Sbjct: 110 P------DAPAPIVPVSAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSI 163
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
L+MGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P
Sbjct: 164 LEMGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPV 217
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
QA QPA +GPNANPLDLFPQ LPN +NA G LD LRN+ QFQ L +VQANPQI
Sbjct: 218 QAVQPA----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLLGLVQANPQI 273
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPE 358
LQP+LQEL KQNP +M+LIQE+Q +F+RLI+EP+EG E N +L Q+A A + + VTPE
Sbjct: 274 LQPLLQELRKQNPRVMQLIQENQAEFMRLISEPLEGDEENEMMLDQMADAT-ETIAVTPE 332
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
E EAI RLE MGFDRALVLEVFFACNKNE+LAANYLLDHMHEF++
Sbjct: 333 ENEAILRLEGMGFDRALVLEVFFACNKNEQLAANYLLDHMHEFDN 377
>gi|356567282|ref|XP_003551850.1| PREDICTED: putative DNA repair protein RAD23-4-like [Glycine max]
Length = 375
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 233/404 (57%), Positives = 285/404 (70%), Gaps = 36/404 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHF ++V P+D V+ VKKNIET QG+DVYPA+QQMLIHQGKVL D TTLE
Sbjct: 1 MKINVKTLKGTHFVLQVNPQDTVAVVKKNIETAQGADVYPAAQQMLIHQGKVLNDATTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+FVV+ML+K+KV SSGAS+ + Q Q++ +++QP PA V
Sbjct: 61 ENKVVENNFVVIMLSKNKV-SSGASSAPSNLGTQPQSSLPPTSSTSQP------PASAVG 113
Query: 121 PPQSVPESAP---PPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATV 177
+S E +P PP P+ +Y AASNL+AGSNLE T+
Sbjct: 114 QGESNSEQSPVITPPTIAVPS--------------------IYDHAASNLMAGSNLETTI 153
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 237
QQIL+MGGG+WDR+TV AL AA+NNPERA+EYLYSGIPE+ VP R+ GQA N
Sbjct: 154 QQILEMGGGNWDRDTVTGALHAAFNNPERAIEYLYSGIPERADVPAAVRSLITGQAEN-- 211
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
+ Q+ QPA PT GPN NPL+LFPQGLPNM + G LD LRN ++FQALR ++ N
Sbjct: 212 SSIQSTQPA--VPTGGPNTNPLNLFPQGLPNMSAIDNRGDLDSLRNREEFQALRETMREN 269
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 357
PQILQPM+QELG+QNP LM++IQ+HQ D L L+NEP EG E N+ QL S + VT+TP
Sbjct: 270 PQILQPMIQELGQQNPQLMQIIQDHQEDILDLMNEP-EGDE-NLQSQLDSMISGTVTITP 327
Query: 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 401
EE EAI+RLEAMGF R +V+E FFACNKNE+LAANYLLDH EF
Sbjct: 328 EENEAIQRLEAMGFHRDIVVEAFFACNKNEDLAANYLLDHPDEF 371
>gi|125561624|gb|EAZ07072.1| hypothetical protein OsI_29318 [Oryza sativa Indica Group]
Length = 406
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 250/413 (60%), Positives = 294/413 (71%), Gaps = 24/413 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KTLKG+ FEI+V+P KVSDVKK IE QG +VYPA QQMLIHQG VLK+ TTLE
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+F+ V++ K SSS AS+ + P Q P T T P
Sbjct: 61 ENKVVENNFI-VIMLSKKGSSSAASSTAKEPTKQ-------PSVDRAIPTAPATQPPAPP 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P S P +AP P A + A A +S+ +D YGQAASNLVAGSNLE TVQ I
Sbjct: 113 APVSEPVTAPVPTATTASAPAAAVTA------ASTEADNYGQAASNLVAGSNLEGTVQSI 166
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS---AGGQAGNPP 237
L+MGGG+WDR+TV+RALRAAYNNPERAVEYLY+G+PEQ P +A A QA P
Sbjct: 167 LEMGGGAWDRDTVMRALRAAYNNPERAVEYLYTGVPEQAEAPAAVQALPVPAAVQALPVP 226
Query: 238 AQTQAQQPA-AP------APTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 290
A Q P+ AP P+SGPNANPLDLFPQ LPN +NAG G LD LRN+ QF+ L
Sbjct: 227 AAVQPVDPSQAPQSAQLSIPSSGPNANPLDLFPQVLPNASANAGGGNLDVLRNNSQFRGL 286
Query: 291 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP 350
++VQANPQILQP+LQELGKQNP +++LIQE+Q +FLRLINEP EG EGN+L Q A+ MP
Sbjct: 287 LSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGNLLDQFAAGMP 346
Query: 351 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
Q V VTPEE EAI+RLE MGFDR LVLEVFFACNK+E+LAANYLLDHM+EF+D
Sbjct: 347 QTVAVTPEENEAIQRLEQMGFDRDLVLEVFFACNKDEQLAANYLLDHMNEFDD 399
>gi|226496401|ref|NP_001149140.1| LOC100282762 [Zea mays]
gi|195625028|gb|ACG34344.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 258/415 (62%), Positives = 308/415 (74%), Gaps = 28/415 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V++VK+ IET QG YPA QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVAEVKRIIETTQGQSTYPADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST +AA A +AP TS T PT A
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATAAKAPATPAQPAAPATSVVRT-------PTQA 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P + E+APP A APA A +S +DVY QAASNLV+G+NLE T+QQI
Sbjct: 114 PV-ATAETAPPSAQTQAAPAATAA--------ASDDADVYSQAASNLVSGNNLEQTIQQI 164
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
LDMGGG+W+R TV+RALRAAYNNPERA++YLYSGIPE PPVARA A GQ N A +
Sbjct: 165 LDMGGGTWERGTVVRALRAAYNNPERAIDYLYSGIPENVEAPPVARAPAAGQQTNQQAPS 224
Query: 241 QAQQPA-----APAPTSGPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQFQA 289
AQ A + A ++ PNANPL+LFPQG+P+ G+N AG+G LD LR QFQA
Sbjct: 225 PAQPAAAPPVQSSAASARPNANPLNLFPQGVPSGGANPGVVPAAGSGALDALRQLPQFQA 284
Query: 290 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASA 348
L +VQANPQILQPMLQELGKQNP ++RLIQE+Q +F+RL+NE EGG GN+LGQLA+A
Sbjct: 285 LLQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFVRLVNETPEGGPGGNILGQLAAA 344
Query: 349 MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
MPQ+VTVTPEEREAI+RLE MGF+ LVLEVFFACNK+EELAANYLLDH HEF++
Sbjct: 345 MPQSVTVTPEEREAIQRLEGMGFNHELVLEVFFACNKDEELAANYLLDHGHEFDE 399
>gi|115476516|ref|NP_001061854.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|38175472|dbj|BAD01169.1| putative osRAD23 [Oryza sativa Japonica Group]
gi|113623823|dbj|BAF23768.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|125603492|gb|EAZ42817.1| hypothetical protein OsJ_27402 [Oryza sativa Japonica Group]
gi|215694056|dbj|BAG89255.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 406
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 250/413 (60%), Positives = 293/413 (70%), Gaps = 24/413 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KTLKG+ FEI+V+P KVSDVKK IE QG +VYPA QQMLIHQG VLK+ TTLE
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV EN+F+ V++ K SSS AS+ + P Q P T T P
Sbjct: 61 ENKVVENNFI-VIMLSKKGSSSAASSTAKEPTKQ-------PSVDRAIPTAPATQPPAPP 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P S P +AP P A + A A +S+ +D YGQAASNLVAGSNLE TVQ I
Sbjct: 113 APVSEPVTAPVPTATTASAPAAAVTA------ASTEADNYGQAASNLVAGSNLEGTVQSI 166
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS---AGGQAGNPP 237
L+MGGG+WDR+TV+RALRAAYNNPERAVEYLY+G+PEQ P +A A QA P
Sbjct: 167 LEMGGGAWDRDTVMRALRAAYNNPERAVEYLYTGVPEQAEAPAAVQALPVPAAVQALPVP 226
Query: 238 AQTQAQQPA-AP------APTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 290
A Q P+ AP P+SGPNANPLDLFPQ LPN +NAG G LD LRN+ QF+ L
Sbjct: 227 AAVQPVDPSQAPQSAQLSIPSSGPNANPLDLFPQVLPNASANAGGGNLDVLRNNSQFRGL 286
Query: 291 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP 350
++VQANPQILQP+LQELGKQNP +++LIQE+Q +FLRLINEP EG EGN+L Q A+ MP
Sbjct: 287 LSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGNLLDQFAAGMP 346
Query: 351 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
Q V VTPEE EAI+RLE MGFDR LVLEVFFACNK+E LAANYLLDHM+EF+D
Sbjct: 347 QTVAVTPEENEAIQRLEQMGFDRDLVLEVFFACNKDELLAANYLLDHMNEFDD 399
>gi|195622128|gb|ACG32894.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 258/415 (62%), Positives = 308/415 (74%), Gaps = 28/415 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V++VK+ IET QG YPA QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVAEVKRIIETTQGQSTYPADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST +AA A +AP TS T PT A
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATAAKAPATPAQPAAPATSVVRT-------PTQA 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P + E+APP A APA A +S +DVY QAASNLV+G+NLE T+QQI
Sbjct: 114 PV-ATAETAPPSAQTQAAPAATAA--------ASDDADVYSQAASNLVSGNNLEQTIQQI 164
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
LDMGGG+W+R TV+RALRAAYNNPERA++YLYSGIPE PPVA A A GQ N A +
Sbjct: 165 LDMGGGTWERGTVVRALRAAYNNPERAIDYLYSGIPENVEAPPVAGAPAAGQQTNQQAPS 224
Query: 241 QAQQPA-----APAPTSGPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQFQA 289
AQ A + A ++ PNANPL+LFPQG+P+ G+N AG+G LD LR QFQA
Sbjct: 225 PAQPAAAPPVQSSAASARPNANPLNLFPQGVPSGGANPGVVPAAGSGALDALRQLPQFQA 284
Query: 290 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASA 348
L +VQANPQILQPMLQELGKQNP ++RLIQE+Q +F+RL+NE EGG GN+LGQLA+A
Sbjct: 285 LLQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFVRLVNETPEGGPGGNILGQLAAA 344
Query: 349 MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
MPQ+VTVTPEEREAI+RLE MGF+R LVLEVFFACNK+EELAANYLLDH HEF++
Sbjct: 345 MPQSVTVTPEEREAIQRLEGMGFNRELVLEVFFACNKDEELAANYLLDHGHEFDE 399
>gi|226528090|ref|NP_001149553.1| LOC100283179 [Zea mays]
gi|194700938|gb|ACF84553.1| unknown [Zea mays]
gi|195627978|gb|ACG35819.1| DNA repair protein RAD23 [Zea mays]
gi|414589470|tpg|DAA40041.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 390
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 251/405 (61%), Positives = 287/405 (70%), Gaps = 26/405 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV+P DKV+ VKK IE +Q YPA QQ+LIHQGKVL D TTLE
Sbjct: 1 MKVSVKTLKGSSFQIEVEPTDKVAAVKKVIENMQEQASYPADQQVLIHQGKVLSDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SSS AAPA T + APPT T P QT A A
Sbjct: 61 ENQVTENNFLVIMLRQNKGSSS------AAPA--KTTANQAPPTQTVPVVPPQTSAAPAA 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P VP SA A A A A D YGQAASNLVAGSNLE T+Q I
Sbjct: 113 PAPIVPVSALAATATASAAPAVAVSTEA---------DSYGQAASNLVAGSNLEGTIQSI 163
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
L+MGGG WDR+TV+RALR AYNNPERAVEYLYSGIPEQ VP + Q NP
Sbjct: 164 LEMGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIPEQMDVP---TSPPSIQPVNPVQAA 220
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
QA Q AAP SGPNANPLDLFPQ LPN +NAG G LD LRN+ QFQ L +VQANPQI
Sbjct: 221 QAAQTAAP---SGPNANPLDLFPQSLPNASANAGTGNLDVLRNNVQFQNLLGLVQANPQI 277
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPE 358
LQP+LQELGKQNP +M+LIQE+Q +F+R+INEP+EG E N +L Q+A A + + VTPE
Sbjct: 278 LQPLLQELGKQNPQVMQLIQENQAEFMRMINEPLEGDEENEMMLDQMADA-AETIAVTPE 336
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
E EAI RLE MGFDRALVLEVFFACNKNE+L ANYLLDHMHEF++
Sbjct: 337 ENEAILRLEGMGFDRALVLEVFFACNKNEQLTANYLLDHMHEFDN 381
>gi|414885365|tpg|DAA61379.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 382
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 246/405 (60%), Positives = 288/405 (71%), Gaps = 34/405 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SSS AAPA T + AP T T P T
Sbjct: 61 ENQVVENNFLVIMLRQNKGSSS------AAPA--KVTANQAPSTQTVPAT---------- 102
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PPQ+ A APA + APA S+ +D YGQA SNLVAGSNLE T++ I
Sbjct: 103 PPQTSAAPD---APAPIAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSI 159
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
L+MGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P
Sbjct: 160 LEMGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPV 213
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
QA QPA +GPNANPLDLFPQ LPN +NA G LD LRN+ QFQ L +VQANPQI
Sbjct: 214 QAVQPA----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLLGLVQANPQI 269
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPE 358
LQP+LQEL KQNP +M+LIQE+Q +F+RLI+EP+EG E N +L Q+A A + + VTPE
Sbjct: 270 LQPLLQELRKQNPRVMQLIQENQAEFMRLISEPLEGDEENEMMLDQMADAT-ETIAVTPE 328
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
E EAI RLE MGFDRALVLEVFFACNKNE+LAANYLLDHMHEF++
Sbjct: 329 ENEAILRLEGMGFDRALVLEVFFACNKNEQLAANYLLDHMHEFDN 373
>gi|224101717|ref|XP_002312393.1| predicted protein [Populus trichocarpa]
gi|222852213|gb|EEE89760.1| predicted protein [Populus trichocarpa]
Length = 333
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/246 (86%), Positives = 220/246 (89%), Gaps = 6/246 (2%)
Query: 159 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 218
VYGQAAS+LVAGSNLE VQQILDMGGG+WDR+TV+RALRAAYNNPERA+EYLYSGIPEQ
Sbjct: 91 VYGQAASSLVAGSNLEVAVQQILDMGGGTWDRDTVVRALRAAYNNPERAIEYLYSGIPEQ 150
Query: 219 TAVPPVARASAGGQAGNPPAQTQAQQPA--APAPTSGPNANPLDLFPQGLPNMGSNAG-A 275
PPVA GGQA P AQ Q Q P A P+ GPNANPLDLFPQGLPN+GS AG A
Sbjct: 151 AEAPPVAHMPLGGQA--PAAQPQ-QHPTQTAAVPSGGPNANPLDLFPQGLPNVGSGAGGA 207
Query: 276 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 335
GTLDFLRNSQQFQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRLINEPVE
Sbjct: 208 GTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQDDFLRLINEPVE 267
Query: 336 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
GEGNVLGQLA+AMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL
Sbjct: 268 SGEGNVLGQLAAAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 327
Query: 396 DHMHEF 401
DHMHEF
Sbjct: 328 DHMHEF 333
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 96/178 (53%), Gaps = 23/178 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTLKG+ F+IEVKPED V+DVKK IET QG VYPA QQMLIHQ KVLKD TTL+
Sbjct: 1 MRIFVKTLKGSTFDIEVKPEDTVADVKKKIETAQGVAVYPAEQQMLIHQAKVLKDNTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQA---------------QTTSSAPPTS 105
ENK+ ENSFVV+ML+K + +S S S QA Q T
Sbjct: 61 ENKIVENSFVVIMLSKVRFASLVLSFESYYVYGQAASSLVAGSNLEVAVQQILDMGGGTW 120
Query: 106 TQPTTTSQTPAPTVAPPQS-------VPESA-PPPAAPAPAPAPAPAPAPAPAPVSSS 155
+ T A P ++ +PE A PP A P APA P P ++
Sbjct: 121 DRDTVVRALRAAYNNPERAIEYLYSGIPEQAEAPPVAHMPLGGQAPAAQPQQHPTQTA 178
>gi|255641364|gb|ACU20959.1| unknown [Glycine max]
Length = 363
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/403 (55%), Positives = 275/403 (68%), Gaps = 40/403 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK S S A+ SS P S PTT S +
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAA-------------SSVQPASNPPTTVSTS------ 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
S PP P A + + AP ++ +D YG AASNLVAGSNLE T+QQI
Sbjct: 102 ------NSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQI 155
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 156 MDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGISSGAVPV-- 213
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
GPN++PL++FPQ + + AG G+LDFLRN+ QFQALR+MVQ+NPQI
Sbjct: 214 ------------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNPQFQALRSMVQSNPQI 260
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 360
LQP+LQELGKQNP L+RLIQEH +FL+LINEPV+G EG++ Q MP A+ VTP E+
Sbjct: 261 LQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVDGSEGDIFEQPEQDMPHAINVTPTEQ 320
Query: 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
EAI RLEAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 321 EAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 363
>gi|358249346|ref|NP_001240038.1| uncharacterized protein LOC100819019 [Glycine max]
gi|255647960|gb|ACU24437.1| unknown [Glycine max]
Length = 363
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/403 (55%), Positives = 275/403 (68%), Gaps = 40/403 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK S S A+ SS P S PTT S +
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAA-------------SSVQPASNPPTTVSTS------ 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
S PP P A + + AP ++ +D YG AASNLVAGSNLE T+QQI
Sbjct: 102 ------NSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQI 155
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 156 MDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGISSGAVPV-- 213
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
GPN++PL++FPQ + + AG G+LDFLRN+ QFQALR+MVQ+NPQI
Sbjct: 214 ------------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNPQFQALRSMVQSNPQI 260
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 360
LQP+LQELGKQNP L+RLIQEH +FL+LINEPV+G EG++ Q MP A+ VTP E+
Sbjct: 261 LQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVDGSEGDIFEQPEQDMPHAINVTPAEQ 320
Query: 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
EAI RLEAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 321 EAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 363
>gi|356521678|ref|XP_003529480.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 363
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 226/403 (56%), Positives = 277/403 (68%), Gaps = 40/403 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK S S A++ S QP + PA TV
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAAS------------------SVQPASN---PATTV- 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
S+ S PP P A + + AP ++ +D YG AASNLVAGSNLE T+QQI
Sbjct: 99 ---SMSNSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQI 155
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 156 MDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPV-- 213
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
GPN++PL++FPQ + + AG G+LDFLRN+ QFQALR+MVQ+NPQI
Sbjct: 214 ------------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNPQFQALRSMVQSNPQI 260
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 360
LQP+LQELGKQNP L+RLIQEH +FL+LINEPVEG EG++ Q MP A+ VTP E+
Sbjct: 261 LQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVEGSEGDMFEQPEQDMPHAINVTPAEQ 320
Query: 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
EAI RLEAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 321 EAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 363
>gi|30699439|ref|NP_850982.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|73620991|sp|Q84L33.3|RD23A_ARATH RecName: Full=Putative DNA repair protein RAD23-1; AltName:
Full=RAD23-like protein 1; Short=AtRAD23-1
gi|21593616|gb|AAM65583.1| DNA repair protein RAD23, putative [Arabidopsis thaliana]
gi|110735096|gb|ABG89118.1| Rad23-3Aii [synthetic construct]
gi|332198160|gb|AEE36281.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 371
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 236/408 (57%), Positives = 284/408 (69%), Gaps = 42/408 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ QT+S + P S TT+S PA A
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQAS----VQTSSVSQPVSA--TTSSTKPA---A 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P S +S+P PA+P PA A +D YGQAAS LV+GS+LE VQQI
Sbjct: 109 P--STTQSSPVPASPIPAQEQPAAQ-----------TDTYGQAASTLVSGSSLEQMVQQI 155
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPP 237
++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 156 MEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---- 211
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ QFQ LRTMV +N
Sbjct: 212 -------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSN 263
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTV 355
PQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ V
Sbjct: 264 PQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINV 323
Query: 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
TP E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FED
Sbjct: 324 TPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371
>gi|334184023|ref|NP_001185439.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198161|gb|AEE36282.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 395
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 241/421 (57%), Positives = 290/421 (68%), Gaps = 44/421 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ QT+S + P S TT+S PA A
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQAS----VQTSSVSQPVSA--TTSSTKPA---A 108
Query: 121 PPQSVPESAPPPAAPAPA---PAP----------APAPAPAPAPVSSSVSDVYGQAASNL 167
P S +S+P PA+P PA PA A P VS + +D YGQAAS L
Sbjct: 109 P--STTQSSPVPASPIPAQEQPAVYAFVFSFAGLAFCPLYGFPKVSMAQTDTYGQAASTL 166
Query: 168 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PV 224
V+GS+LE VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P
Sbjct: 167 VSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPE 226
Query: 225 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 284
A+ + G A P APA + GPN++PLDLFPQ + GTL+FLRN+
Sbjct: 227 AQIAGSGAA-----------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNN 274
Query: 285 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVL 342
QFQ LRTMV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++
Sbjct: 275 DQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMF 334
Query: 343 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 402
Q MP A+ VTP E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FE
Sbjct: 335 DQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFE 394
Query: 403 D 403
D
Sbjct: 395 D 395
>gi|449501601|ref|XP_004161413.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 401
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 238/419 (56%), Positives = 281/419 (67%), Gaps = 34/419 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+ D V VKKNIE VQG D YP QQ+LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E F+VVML+KSK S S A Q+ T + P QP +S TPA V
Sbjct: 61 ENKVSEEGFLVVMLSKSKTSVS---------AGQSSTQPAQNPPVAQPVLSS-TPAAQVT 110
Query: 121 PP-----QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSV------SDVYGQAASNLVA 169
P Q P P P AP AP AP+ AP +S +D YGQAASNLVA
Sbjct: 111 PSPTPAAQVTPSPTPAPQAPTQAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVA 170
Query: 170 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARAS 228
G+NLE TVQQ++DMGGG+WDRETV+RALRAAYNNPERAV+YLYSGIPE V PV R
Sbjct: 171 GNNLEQTVQQLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFG 230
Query: 229 AGGQAGNPPAQTQAQQPAAPAPTSG-PNANPLDLFPQ---GLPNMGSNAGAGTLDFLRNS 284
+G Q + PAP SG PN PL++FPQ + G G+L+FLRN+
Sbjct: 231 SG--------QATETDASVPAPVSGAPNTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNN 282
Query: 285 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ 344
QFQALRTMV NPQILQPMLQELGKQNP L+RLIQ+H +FL+LINEPV+ EG + Q
Sbjct: 283 PQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQ 342
Query: 345 LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
MP A+ VTP E+ AIERLEAMGFDRALV+E F AC++NEELAANYLL++ +F+D
Sbjct: 343 AEPDMPHAINVTPAEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFDD 401
>gi|30409718|dbj|BAC76389.1| RAD23-like protein [Arabidopsis thaliana]
Length = 371
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 234/408 (57%), Positives = 283/408 (69%), Gaps = 42/408 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ QT+S + P S TT+S PA A
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQAS----VQTSSVSQPVSA--TTSSTKPA---A 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P S +S+P PA+P PA A +D YGQAAS LV+GS+LE VQQI
Sbjct: 109 P--STTQSSPVPASPIPAQEQPAAQ-----------TDTYGQAASTLVSGSSLEQMVQQI 155
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPP 237
++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 156 MEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---- 211
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ Q + LRTMV +N
Sbjct: 212 -------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQLEQLRTMVHSN 263
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTV 355
PQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ V
Sbjct: 264 PQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINV 323
Query: 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
TP E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FED
Sbjct: 324 TPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371
>gi|22330746|ref|NP_565216.2| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|14334442|gb|AAK59419.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|17104777|gb|AAL34277.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|332198158|gb|AEE36279.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 365
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 230/408 (56%), Positives = 279/408 (68%), Gaps = 48/408 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ + TTSS P + P+TT +P P
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQASVQPVSATTSSTKPAA--PSTTQSSPVP--- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
++P PA PA + +D YGQAAS LV+GS+LE VQQI
Sbjct: 113 -------ASPIPAQEQPA----------------AQTDTYGQAASTLVSGSSLEQMVQQI 149
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPP 237
++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 150 MEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---- 205
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ QFQ LRTMV +N
Sbjct: 206 -------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSN 257
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTV 355
PQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ V
Sbjct: 258 PQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINV 317
Query: 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
TP E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FED
Sbjct: 318 TPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 365
>gi|110735098|gb|ABG89119.1| Rad23-3Ai [synthetic construct]
Length = 365
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 230/408 (56%), Positives = 279/408 (68%), Gaps = 48/408 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ + TTSS P + P+TT +P P
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQASVQPVSATTSSTNPAA--PSTTQSSPVP--- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
++P PA PA + +D YGQAAS LV+GS+LE VQQI
Sbjct: 113 -------ASPIPAQEQPA----------------AQTDTYGQAASTLVSGSSLEQMVQQI 149
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPP 237
++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 150 MEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---- 205
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ QFQ LRTMV +N
Sbjct: 206 -------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSN 257
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTV 355
PQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ V
Sbjct: 258 PQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINV 317
Query: 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
TP E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FED
Sbjct: 318 TPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 365
>gi|326501072|dbj|BAJ98767.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 414
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 252/423 (59%), Positives = 304/423 (71%), Gaps = 31/423 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEIE PE V +VK+ IE+ QG +VYPA Q M+I+QGK+LKD TTL+
Sbjct: 1 MKLNVKTLKGTSFEIEATPESSVGEVKRIIESAQGQNVYPADQLMIIYQGKILKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
NKVAENSF+V+ML+K K SSSGAS+ S AP +Q+Q + P + P P +
Sbjct: 61 ANKVAENSFLVIMLSKPKASSSGASSASKAPVSQSQPAT--------PVAAATPPVPVAS 112
Query: 121 ----PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEAT 176
PP P +A PA P+ P+ A + PA A +S +DVY QAASNLV+G LE T
Sbjct: 113 AARSPPSQAPVAASEPAPPSAQPS-AVSDTPAAAVTASGDADVYSQAASNLVSGGILEQT 171
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-AVPPVARASAGGQAGN 235
VQQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE A P + QA N
Sbjct: 172 VQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPESVEAPPVARAPAPAQQAQN 231
Query: 236 PPAQTQAQQPAAPAP--------TSGPNANPLDLFPQGLPN------MGSNAGAGTLDFL 281
A +QAQ AAP P ++GPNANPL+LFPQG+P+ G AGAG LD L
Sbjct: 232 LQAPSQAQ--AAPLPAVQPSGGVSAGPNANPLNLFPQGVPSGGANAGAGVGAGAGALDAL 289
Query: 282 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE-PVEGGEGN 340
R QFQAL +VQANPQILQPMLQELGKQNP ++RLIQE+Q +FLRL+NE P G GN
Sbjct: 290 RQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPESGAGGN 349
Query: 341 VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
+LG LA+ MPQAV VTPEEREAI+RLE+MGF+R LVLEVFFACN++EELAANYLLDH HE
Sbjct: 350 ILGALAAQMPQAVQVTPEEREAIQRLESMGFNRELVLEVFFACNRDEELAANYLLDHGHE 409
Query: 401 FED 403
FE+
Sbjct: 410 FEE 412
>gi|356521682|ref|XP_003529482.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 3
[Glycine max]
Length = 348
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 226/404 (55%), Positives = 273/404 (67%), Gaps = 57/404 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK S S A++ S QP + PA TV+
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAAS------------------SVQPASN---PATTVS 99
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVS-DVYGQAASNLVAGSNLEATVQQ 179
S P S PP V + VS D YG AASNLVAGSNLE T+QQ
Sbjct: 100 MSNSTPPSDPP--------------------VQTHVSADTYGLAASNLVAGSNLEQTIQQ 139
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
I+DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 140 IMDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPV- 198
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 299
GPN++PL++FPQ + + AG G+LDFLRN+ QFQALR+MVQ+NPQ
Sbjct: 199 -------------GPNSSPLNMFPQETIS-STGAGLGSLDFLRNNPQFQALRSMVQSNPQ 244
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 359
ILQP+LQELGKQNP L+RLIQEH +FL+LINEPVEG EG++ Q MP A+ VTP E
Sbjct: 245 ILQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVEGSEGDMFEQPEQDMPHAINVTPAE 304
Query: 360 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+EAI RLEAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 305 QEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 348
>gi|30409720|dbj|BAC76390.1| RAD23-like protein [Arabidopsis thaliana]
Length = 365
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 228/408 (55%), Positives = 278/408 (68%), Gaps = 48/408 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ + TTSS P + P+TT +P P
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQASVQPVSATTSSTKPAA--PSTTQSSPVP--- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
++P PA PA + +D YGQAAS LV+GS+LE VQQI
Sbjct: 113 -------ASPIPAQEQPA----------------AQTDTYGQAASTLVSGSSLEQMVQQI 149
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPP 237
++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 150 MEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---- 205
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ Q + LRTMV +N
Sbjct: 206 -------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQLEQLRTMVHSN 257
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTV 355
PQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ V
Sbjct: 258 PQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINV 317
Query: 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
TP E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FED
Sbjct: 318 TPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 365
>gi|118486403|gb|ABK95041.1| unknown [Populus trichocarpa]
Length = 375
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 225/406 (55%), Positives = 279/406 (68%), Gaps = 34/406 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI+V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV E+ F+VVML+KSK +++G T+S P T
Sbjct: 61 DNKVTEDGFLVVMLSKSKTAAAG--------------------------TSSTQPVSTPP 94
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
S P AP + + + + +++ SD YGQAASNLVAGS+LE T+QQI
Sbjct: 95 TTTPTSNSTPDAPAPDAQAPASKSASASDTATANAQSDTYGQAASNLVAGSSLEQTIQQI 154
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQ 239
+D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVAR A + +
Sbjct: 155 MDVGGGNWDKETVTRALRAAYNNPERAVDYLYSGIPETAEVAVPVARFPA-----DQGIE 209
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA--GTLDFLRNSQQFQALRTMVQAN 297
T A A GPN++PL++FP+ L G +AG G+LDFLRN+QQFQALR+MVQAN
Sbjct: 210 TGAAPAAPALAPGGPNSSPLNMFPETLSGGGGDAGLVLGSLDFLRNNQQFQALRSMVQAN 269
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 357
PQILQPMLQELGKQNP L+R+IQEH +FL+LINEP++G EG++ Q MP A+ VTP
Sbjct: 270 PQILQPMLQELGKQNPQLLRMIQEHNAEFLQLINEPLDGSEGDIFDQPDQDMPHAINVTP 329
Query: 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
E+EAIERL AMGFDRALV+E F AC++NEELAANYLL++ +FED
Sbjct: 330 AEQEAIERLVAMGFDRALVIEAFLACDRNEELAANYLLENGADFED 375
>gi|297842761|ref|XP_002889262.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
gi|297335103|gb|EFH65521.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
Length = 365
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/407 (56%), Positives = 278/407 (68%), Gaps = 46/407 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG + YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKNNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVS-SSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
ENKV E F+VVML+KSK + S+G S+V A A TTSS P + P+TT P
Sbjct: 61 ENKVTEEGFLVVMLSKSKTAGSAGQSSVQPASA----TTSSTKPET--PSTTQSIAVP-- 112
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
++P A PA + +D YGQAAS LV+GS+LE VQQ
Sbjct: 113 --------ASPITAQEQPA----------------AQTDTYGQAASTLVSGSSLEQMVQQ 148
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ-AGNPPA 238
I++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE VA A G Q AG+ A
Sbjct: 149 IMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPE---TAEVAVAVPGAQMAGSGAA 205
Query: 239 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 298
P APA + GPN++PLDLFPQ + GTL+FLRN+ QFQ LRTMV +NP
Sbjct: 206 ------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNP 258
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVT 356
QILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG G+ ++L Q MP A+ VT
Sbjct: 259 QILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGDADMLDQPEQEMPHAINVT 318
Query: 357 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
P E+EAI+RLEAMGFD+ALV+E F AC++NEELAANYLL++ +FED
Sbjct: 319 PAEQEAIQRLEAMGFDKALVIEAFLACDRNEELAANYLLENSGDFED 365
>gi|358346471|ref|XP_003637291.1| RAD23 protein [Medicago truncatula]
gi|355503226|gb|AES84429.1| RAD23 protein [Medicago truncatula]
Length = 366
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 227/412 (55%), Positives = 278/412 (67%), Gaps = 55/412 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV+E+ F+VVML+KSKV + +A + QT S+ P T P +TS V
Sbjct: 61 DNKVSEDGFLVVMLSKSKV-------LGSAGTSSTQTASNPPITVPTPDSTS------VV 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
QS +A P AP V++ D YGQAASNLVAGSNLE T+QQ+
Sbjct: 108 QTQSANNNASPAVL-------------APTNVTT---DTYGQAASNLVAGSNLEQTIQQL 151
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+DMGGGSWDR+TV RALRAA+NNPERAV+YLYSGIPE V A
Sbjct: 152 IDMGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEV----------------AVP 195
Query: 241 QAQQPAAPAPTSG---------PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 291
AQ P+ P T G PN++PL++FPQ + G+ AGAG+LDFLRN+ QFQALR
Sbjct: 196 AAQYPSNPTETGGVTTGVVPGVPNSSPLNMFPQETIS-GAGAGAGSLDFLRNNPQFQALR 254
Query: 292 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ 351
TMVQ+NPQILQP+LQELGKQNP L+RLI EH ++FL+LINEP++G EG+ Q MP
Sbjct: 255 TMVQSNPQILQPVLQELGKQNPGLLRLIDEHHSEFLQLINEPMDGTEGDNFDQAEQDMPH 314
Query: 352 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
AV VTP E+EAI RLEAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 315 AVNVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 366
>gi|302756389|ref|XP_002961618.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
gi|300170277|gb|EFJ36878.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
Length = 367
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 236/409 (57%), Positives = 282/409 (68%), Gaps = 48/409 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF+++V+P D V VKK IE +QG + +P +QQ+LIHQGKVLKD TT++
Sbjct: 1 MKISVKTLKGNHFDLDVQPADTVIAVKKQIEDLQGKESFPCAQQLLIHQGKVLKDETTMD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+EN F+VVMLTKSK +AAP T+S A P+ST
Sbjct: 61 ENKVSENGFLVVMLTKSK---------TAAP-----TSSGATPSST-------------- 92
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PQ+ APA PAP ++ SDVYGQAASNLVAG+ LE T+QQ+
Sbjct: 93 -PQA-----------APATVTTTPSPAPPAPAPTATSDVYGQAASNLVAGTGLEQTIQQL 140
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+DMGGGSWDR++ RALRAAYNNPERAVEYLYSGIP+ PPVARA A +
Sbjct: 141 VDMGGGSWDRDSCARALRAAYNNPERAVEYLYSGIPDVADAPPVARAPPAAPAAATAPPS 200
Query: 241 QAQQPAAPAP--TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 298
A PAP T GPNA PLDLFPQ G G LDFLRN+ QFQALRTMVQ NP
Sbjct: 201 AAPTGGVPAPAATGGPNAVPLDLFPQVRTPPAGGGGNGALDFLRNNAQFQALRTMVQQNP 260
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE----GNVLGQLASAMPQAVT 354
Q+LQPMLQELG+QNP L+RLI E+ +FLRLI+E GGE G++LGQLA AMPQ+++
Sbjct: 261 QLLQPMLQELGRQNPQLLRLINENHVEFLRLISEA--GGENPEAGDLLGQLAGAMPQSIS 318
Query: 355 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
VTPEEREAIERLEAMGFDRA V+E F AC+KNE+LAANYLL+H ++ED
Sbjct: 319 VTPEEREAIERLEAMGFDRASVIEAFLACDKNEQLAANYLLEHSGDYED 367
>gi|297844544|ref|XP_002890153.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
gi|297335995|gb|EFH66412.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
Length = 364
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 224/405 (55%), Positives = 269/405 (66%), Gaps = 43/405 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK T SSA P+S QPT+T+ +
Sbjct: 61 ENKVTEEGFLVVMLSKSK------------------TPSSAGPSSIQPTSTTTSTISPTP 102
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+AP A PA P PA SD YGQAAS LV+GS++E VQQI
Sbjct: 103 L------AAPSIAVPASNSTPVQEQLPAQ-------SDTYGQAASTLVSGSSVEQMVQQI 149
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE A+P + G A
Sbjct: 150 MEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVAIPATNLSGVGSGA------- 202
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+ AP + GPN++PLDLFPQ + GTL+FLR + QFQ LR+MV +NPQI
Sbjct: 203 ---ELTAPPASGGPNSSPLDLFPQEAVSDAGGGDLGTLEFLRGNDQFQQLRSMVNSNPQI 259
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG--NVLGQLASAMPQAVTVTPE 358
LQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG +G ++ Q MP AV VTPE
Sbjct: 260 LQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDMDIFDQPEQEMPHAVNVTPE 319
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL+H +FED
Sbjct: 320 EQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLEHSADFED 364
>gi|15221013|ref|NP_173070.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
gi|73620992|sp|Q84L32.2|RD23B_ARATH RecName: Full=Putative DNA repair protein RAD23-2; AltName:
Full=RAD23-like protein 2; Short=AtRAD23-2
gi|110735100|gb|ABG89120.1| Rad23-3B [synthetic construct]
gi|332191297|gb|AEE29418.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
Length = 368
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/405 (53%), Positives = 271/405 (66%), Gaps = 39/405 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK +SS A P++ T+++ +++ AP+
Sbjct: 61 ENKVTEEGFLVVMLSKSKTASS------AGPSSTQPTSTTT-----STISSTTLAAPSTT 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+VP S P P ++ SD YGQAAS LV+GS++E VQQI
Sbjct: 110 QSIAVPASNSTPVQEQP----------------TAQSDTYGQAASTLVSGSSIEQMVQQI 153
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE +P + G
Sbjct: 154 MEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVGS--------- 204
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
++ AP P+ GPN++PLDLFPQ + + GTL+FLR + QFQ LR+MV +NPQI
Sbjct: 205 -GRELTAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQI 263
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMPQAVTVTPE 358
LQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG +G+V Q MP +V VTPE
Sbjct: 264 LQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPE 323
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
E+E+IERLEAMGFDRA+V+E F +C++NEELAANYLL+H +FED
Sbjct: 324 EQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368
>gi|298204749|emb|CBI25247.3| unnamed protein product [Vitis vinifera]
Length = 399
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 231/410 (56%), Positives = 283/410 (69%), Gaps = 18/410 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+KSK S GA+ S+A + ++ P + P T
Sbjct: 61 ENKVTEDGFLVVMLSKSK--SIGATGTSSAQSASTPAPAAIPTPAPAPIPTPAPAPIATP 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVS-----SSVSDVYGQAASNLVAGSNLEA 175
P + AP P A A AP A AP S S ++D YGQAASN+V+ ++LE
Sbjct: 119 APAPIATPAPAPNPTAAAEAPVNAQAPRSISTSEVATDSVLADTYGQAASNIVSANHLEQ 178
Query: 176 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAG 234
T+QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVA
Sbjct: 179 TIQQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHF------- 231
Query: 235 NPPAQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 293
PA + A AP SG PN++PL++FPQ + + G G+L+FLRN+ QFQALR M
Sbjct: 232 --PADQETGGAAPAAPASGVPNSSPLNMFPQETLSGAAGGGLGSLEFLRNNHQFQALRAM 289
Query: 294 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAV 353
VQANPQILQPMLQELGKQNPHL+RLIQEH +FL+LINEP+EG EG++ Q +P A+
Sbjct: 290 VQANPQILQPMLQELGKQNPHLLRLIQEHHAEFLQLINEPLEGSEGDIFDQPEQELPHAI 349
Query: 354 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
VTP E+EAIERLEAMGFDRALV+E F AC++NEELA NYLL++ ++ED
Sbjct: 350 NVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEELAVNYLLENAGDYED 399
>gi|449459440|ref|XP_004147454.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 374
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 228/407 (56%), Positives = 277/407 (68%), Gaps = 37/407 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HF+IEV+P D V VKKNIE VQG D YP SQQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFQIEVQPTDTVLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLT 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENK+ E+ F+VVML+KSK AP + +++ T T +
Sbjct: 61 ENKITEDGFLVVMLSKSK-----------APGSTGSSSTQTTTIVPTTTPTPNS------ 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
S+PE APA PA + A + P +++ D YGQAASNLV+G+NLE T+Q+I
Sbjct: 104 --TSIPE------APA-QPAASRNVAISDVPTANAQIDTYGQAASNLVSGNNLEQTIQEI 154
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQ 239
+DMGGGSWDRETV RALRAAYNNPERAV+YLYSGIPE V PVAR G
Sbjct: 155 MDMGGGSWDRETVTRALRAAYNNPERAVDYLYSGIPETAEVAAPVARPPTG-------QP 207
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQ---GLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
A AP + GPN++PL++FPQ G G+L+FLRN+ QFQALR+MVQA
Sbjct: 208 IDAGGATAPPVSGGPNSSPLNMFPQESLAAAAGGGGGSLGSLEFLRNNPQFQALRSMVQA 267
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVT 356
NPQILQ MLQELGKQNP L+RLIQ+HQ +FL+LINEP+EG EG++ Q MP A+ VT
Sbjct: 268 NPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEGFEGDLFDQPDQDMPHAINVT 327
Query: 357 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
P E++AIERLEAMGFDR V+E F AC++NEELAANYLL+H EFED
Sbjct: 328 PAEQQAIERLEAMGFDRDQVIEAFLACDRNEELAANYLLEHGGEFED 374
>gi|357158336|ref|XP_003578095.1| PREDICTED: probable DNA repair protein RAD23-like isoform 2
[Brachypodium distachyon]
Length = 370
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 230/406 (56%), Positives = 274/406 (67%), Gaps = 43/406 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV P DKVSDVKK IE+ QG +VYPA QQMLIHQG
Sbjct: 1 MKVSVKTLKGSSFQIEVNPADKVSDVKKLIESSQGQNVYPADQQMLIHQG---------- 50
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+K SSS A S P+NQ APPT T P + P+
Sbjct: 51 ---------------TNKGSSSAAPAKSKEPSNQ------APPTQTVP---ANPPSQAPV 86
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P +AP P P AP P +PA A S+ ++ YGQAASNLVAG NLEAT+Q I
Sbjct: 87 VPAPPAAAAPAPIVPISAPTPTATASPASAVAVSTEAETYGQAASNLVAGGNLEATIQSI 146
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
L+MGGG+WDR+TV+RALRAA+NNPERAVEYLYSGIPE +P ++
Sbjct: 147 LEMGGGTWDRDTVLRALRAAFNNPERAVEYLYSGIPEPMEIPAPPPSAQPA------DPV 200
Query: 241 QAQQPAAPA-PTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQANP 298
QA Q PA +SGPNA+PLDLFPQ LPN +N AG G LD LRN+ QF++L ++VQANP
Sbjct: 201 QALQATQPAVASSGPNASPLDLFPQALPNASANAAGEGNLDVLRNNAQFRSLLSLVQANP 260
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG-NVLGQLASAMPQAVTVTP 357
QILQP+LQELGKQNP +++LIQ++Q +FLRLINEP EG E N+L Q A +PQ + VTP
Sbjct: 261 QILQPLLQELGKQNPQILQLIQDNQAEFLRLINEPAEGDEDENLLDQFAEGVPQTIAVTP 320
Query: 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
EE EAI RLE MGFDRALVLEV+FACNK+E LAANYLLDHM+EF+D
Sbjct: 321 EENEAILRLEGMGFDRALVLEVYFACNKDETLAANYLLDHMNEFDD 366
>gi|449439755|ref|XP_004137651.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 358
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 226/408 (55%), Positives = 267/408 (65%), Gaps = 55/408 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+ D V VKKNIE VQG D YP QQ+LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E F+VVML+KSK T+ SA +STQP
Sbjct: 61 ENKVSEEGFLVVMLSKSK------------------TSVSAGQSSTQPAQN--------- 93
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PP A P + PA P S +D YGQAASNLVAG+NLE TVQQ+
Sbjct: 94 ---------PPVAQPVLSSTPAAQVTP------SVQTDTYGQAASNLVAGNNLEQTVQQL 138
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQ 239
+DMGGG+WDRETV+RALRAAYNNPERAV+YLYSGIPE V PV R +G Q
Sbjct: 139 MDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSG--------Q 190
Query: 240 TQAQQPAAPAPTSG-PNANPLDLFPQ---GLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 295
+ PAP SG PN PL++FPQ + G G+L+FLRN+ QFQALRTMV
Sbjct: 191 ATETDASVPAPVSGAPNTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQALRTMVH 250
Query: 296 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTV 355
NPQILQPMLQELGKQNP L+RLIQ+H +FL+LINEPV+ EG + Q MP A+ V
Sbjct: 251 TNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPVDNFEGEMFEQAEPDMPHAINV 310
Query: 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
TP E+ AIERLEAMGFDRALV+E F AC++NEELAANYLL++ +F+D
Sbjct: 311 TPAEQAAIERLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFDD 358
>gi|145334669|ref|NP_001078680.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|332006939|gb|AED94322.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 332
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 228/348 (65%), Positives = 258/348 (74%), Gaps = 25/348 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLE
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN V ENSF+V+ML+K+K S SGAST SA PA P++TQP T VA
Sbjct: 60 ENNVVENSFIVIMLSKTKASPSGASTASA-PA----------PSATQPQT--------VA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PQ P A P P A A APA +S +DVYGQAASNLVAG+ LE+TVQQI
Sbjct: 101 TPQ-----VSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQI 155
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
LDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPVA+A A G+ P
Sbjct: 156 LDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQ 215
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
Q A A T GPNANPL+LFPQG+P + AGAG LDFLRNSQQFQALR MVQANPQI
Sbjct: 216 PQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQQFQALRAMVQANPQI 275
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA 348
LQPMLQELGKQNP L+RLIQEHQ DFLRLINEPVEG E G + S+
Sbjct: 276 LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGEEWECYGTVGSS 323
>gi|224073098|ref|XP_002303970.1| predicted protein [Populus trichocarpa]
gi|222841402|gb|EEE78949.1| predicted protein [Populus trichocarpa]
Length = 358
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 225/406 (55%), Positives = 270/406 (66%), Gaps = 51/406 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI+V P D + VKKNIE QG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVHPTDTIMGVKKNIEDAQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV E+ F+VVML+KSK ++G T+S P T
Sbjct: 61 DNKVTEDGFLVVMLSKSKTGTAG--------------------------TSSTQPVSTPP 94
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
S P P A A A SD YGQAASNLVAGSNLE T+QQI
Sbjct: 95 TTTPTSISTPAPDAQAFAQ-----------------SDTYGQAASNLVAGSNLEQTLQQI 137
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQ 239
+DMGGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVAR A + +
Sbjct: 138 MDMGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPETAEVAVPVARFPA-----DQATE 192
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG--TLDFLRNSQQFQALRTMVQAN 297
T A A PN++PL++FP+ + G AG G +LDFLRN+QQFQALR+MVQAN
Sbjct: 193 TGAAPAAPAPAFGAPNSSPLNMFPETISGGGGGAGGGLGSLDFLRNNQQFQALRSMVQAN 252
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 357
PQILQPMLQELGKQNP L+R+IQEH +FL+LINEP++G EG++ Q MP A+ VTP
Sbjct: 253 PQILQPMLQELGKQNPQLLRIIQEHHAEFLQLINEPLDGSEGDIFDQPDQDMPHAINVTP 312
Query: 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
E+EAIERLEAMGFDRALV+E F AC++NE+LAANYLL++ +FED
Sbjct: 313 AEQEAIERLEAMGFDRALVIEAFLACDRNEQLAANYLLENAGDFED 358
>gi|302762537|ref|XP_002964690.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
gi|300166923|gb|EFJ33528.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
Length = 385
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 230/410 (56%), Positives = 285/410 (69%), Gaps = 32/410 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF+++V+P D V VKK IE +QG + +P +QQ+LIHQGKVLKD TT++
Sbjct: 1 MKISVKTLKGNHFDLDVQPADTVIAVKKQIEDLQGKESFPCAQQLLIHQGKVLKDETTMD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQ-TPAPTV 119
ENKV+EN F+VVMLTKS+ SSG + S++ ++ + + S++ + + S+ +
Sbjct: 61 ENKVSENGFLVVMLTKSR--SSGIARCSSSSSSSSSSPSTSSSSGSGCYAVSKFSLLHLF 118
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
S+ PPAA SDVYGQAASNLVAG+ LE T+QQ
Sbjct: 119 WCSLSLVFLRRPPAA---------------------TSDVYGQAASNLVAGTGLEQTIQQ 157
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
++DMGGGSWDR++ +RALRAAYNNPERAVEYLYSGIP+ PPVARA A
Sbjct: 158 LVDMGGGSWDRDSCVRALRAAYNNPERAVEYLYSGIPDVADAPPVARAPPAAPAAATAPP 217
Query: 240 TQAQQPAAPAP--TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
T A PAP T GPNA PLDLFPQ G G LDFLRN+ QFQALRTMVQ N
Sbjct: 218 TAAPTGGVPAPAATGGPNAVPLDLFPQVRTPPAGGGGNGALDFLRNNAQFQALRTMVQQN 277
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE----GNVLGQLASAMPQAV 353
PQ+LQPMLQELG+QNP L+RLI E+ +FLRLI+E GGE G++LGQLA AMPQ++
Sbjct: 278 PQLLQPMLQELGRQNPQLLRLINENHVEFLRLISEA--GGENPEAGDLLGQLAGAMPQSI 335
Query: 354 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+VTPEEREAIERLEAMGFDRA V+E F AC+KNE+LAANYLL+H ++ED
Sbjct: 336 SVTPEEREAIERLEAMGFDRASVIEAFLACDKNEQLAANYLLEHSGDYED 385
>gi|359483130|ref|XP_002270323.2| PREDICTED: putative DNA repair protein RAD23-1-like [Vitis
vinifera]
Length = 400
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 227/409 (55%), Positives = 281/409 (68%), Gaps = 15/409 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+KSK S GA+ S+A + ++ P + P T
Sbjct: 61 ENKVTEDGFLVVMLSKSK--SIGATGTSSAQSASTPAPAAIPTPAPAPIPTPAPAPIATP 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVS-----SSVSDVYGQAASNLVAGSNLEA 175
P + AP P A A AP A AP S S ++D YGQAASN+V+ ++LE
Sbjct: 119 APAPIATPAPAPNPTAAAEAPVNAQAPRSISTSEVATDSVLADTYGQAASNIVSANHLEQ 178
Query: 176 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAG 234
T+QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVA A
Sbjct: 179 TIQQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHFPAD---- 234
Query: 235 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 294
+T + A + PN++PL++FPQ + + G G+L+FLRN+ QFQALR MV
Sbjct: 235 ---QETGSGAAPAAPASGVPNSSPLNMFPQETLSGAAGGGLGSLEFLRNNHQFQALRAMV 291
Query: 295 QANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT 354
QANPQILQPMLQELGKQNPHL+RLIQEH +FL+LINEP+EG EG++ Q +P A+
Sbjct: 292 QANPQILQPMLQELGKQNPHLLRLIQEHHAEFLQLINEPLEGSEGDIFDQPEQELPHAIN 351
Query: 355 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
VTP E+EAIERLEAMGFDRALV+E F AC++NEELA NYLL++ ++ED
Sbjct: 352 VTPAEQEAIERLEAMGFDRALVIEAFLACDRNEELAVNYLLENAGDYED 400
>gi|30409722|dbj|BAC76391.1| RAD23-like protein [Arabidopsis thaliana]
Length = 366
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 214/405 (52%), Positives = 270/405 (66%), Gaps = 41/405 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLP--TIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK +SS A P++ T+++ +++ AP+
Sbjct: 59 ENKVTEEGFLVVMLSKSKTASS------AGPSSTQPTSTTT-----STISSTTLAAPSTT 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+VP S P P ++ SD YGQAAS LV+GS++E VQQI
Sbjct: 108 QSIAVPASNSTPVQEQP----------------TAQSDTYGQAASTLVSGSSIEQMVQQI 151
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE +P + G
Sbjct: 152 MEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVGS--------- 202
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
++ AP P+ GPN++PLDLFPQ + + GTL+FLR + QFQ LR+MV +NPQI
Sbjct: 203 -GRELTAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQI 261
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMPQAVTVTPE 358
LQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG +G+V Q MP +V VTPE
Sbjct: 262 LQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPE 321
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
E+E+IERLEAMGFDRA+V+E F +C++NEELAANYLL+H +FED
Sbjct: 322 EQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 366
>gi|356550683|ref|XP_003543714.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 353
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 219/406 (53%), Positives = 268/406 (66%), Gaps = 58/406 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D + VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLS 60
Query: 61 ENKVAENSFVVVMLTKSK-VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+NKV+E+ F+VVML+K K + S+G S+ A N PPT TV
Sbjct: 61 DNKVSEDGFLVVMLSKGKTLGSAGISSTQACCFN--------PPT-------------TV 99
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
+ P S P P ++ YGQAASNLVAGSNLE T+QQ
Sbjct: 100 STPNSTPLVQP-----------------------HVTTNTYGQAASNLVAGSNLEQTIQQ 136
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPP 237
++DMGGGSWDR+TV ALRAAYNNPERAV+YLYSGIP + AVP A P
Sbjct: 137 LMDMGGGSWDRDTVTCALRAAYNNPERAVDYLYSGIPVAAEIAVPA---------ASYPI 187
Query: 238 AQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
+QT A+ G PN++PL++FPQ + G+ A G+LDFLRN+ QFQALR+MVQ+
Sbjct: 188 SQTTETGGASVGAVPGVPNSSPLNMFPQETIS-GAGAEIGSLDFLRNNPQFQALRSMVQS 246
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVT 356
NPQILQP+LQELGKQNP L+ LIQEH +FL+LINEPVEG EG++ Q MP A+ VT
Sbjct: 247 NPQILQPVLQELGKQNPSLLTLIQEHHAEFLQLINEPVEGSEGDIFDQPEQDMPHAINVT 306
Query: 357 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 402
P E+EAI RLEAMGFDRA V+E F AC+ +E+LAANYLL++ +FE
Sbjct: 307 PAEQEAIGRLEAMGFDRASVIEAFLACDHDEQLAANYLLENAGDFE 352
>gi|356550681|ref|XP_003543713.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 367
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 219/405 (54%), Positives = 274/405 (67%), Gaps = 42/405 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D + VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLS 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV+E+ F+VVML+K K T+ +A + Q S+ P T + P +T P V
Sbjct: 61 DNKVSEDGFLVVMLSKGK-------TLGSAGISSTQFASNPPTTVSTPNST-----PLVQ 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P QS +A + ++ ++ YGQAASNLVAGSNLE T+QQ+
Sbjct: 109 P-QSANNNA----------------SATDVTTTNVTTNTYGQAASNLVAGSNLEQTIQQL 151
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 238
+DMGGGSWDR+TV ALRAAYNNPERAV+YLYSGIP + AVP A P +
Sbjct: 152 MDMGGGSWDRDTVTCALRAAYNNPERAVDYLYSGIPVAAEIAVPA---------ASYPIS 202
Query: 239 QTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
QT A+ G PN++PL++FPQ + G+ A G+LDFLRN+ QFQALR+MVQ+N
Sbjct: 203 QTTETGGASVGAVPGVPNSSPLNMFPQETIS-GAGAEIGSLDFLRNNPQFQALRSMVQSN 261
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 357
PQILQP+LQELGKQNP L+ LIQEH +FL+LINEPVEG EG++ Q MP A+ VTP
Sbjct: 262 PQILQPVLQELGKQNPSLLTLIQEHHAEFLQLINEPVEGSEGDIFDQPEQDMPHAINVTP 321
Query: 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 402
E+EAI RLEAMGFDRA V+E F AC+ +E+LAANYLL++ +FE
Sbjct: 322 AEQEAIGRLEAMGFDRASVIEAFLACDHDEQLAANYLLENAGDFE 366
>gi|1914685|emb|CAA72742.1| RAD23 protein, isoform II [Daucus carota]
Length = 379
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 216/405 (53%), Positives = 266/405 (65%), Gaps = 28/405 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI +P D V +KKNIE +QG D YP QQ+LIH GKVLKD +TL
Sbjct: 1 MKLTVKTLKGSHFEIRAQPNDTVMAIKKNIEDLQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E+K++E+ F+VVML KSK SS T + A + + + P + PA V
Sbjct: 61 ESKISEDGFLVVMLGKSKTMSS---TGTPAAQSSSAPAPTPAPAVAPAPAPAAAPASAVI 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P +VPE+ P +PA AP SD YG+AASN+VAGSNLE T+Q I
Sbjct: 118 PNTTVPEA---PLSPAFAP-----------------SDTYGEAASNVVAGSNLEQTIQHI 157
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVARASAGGQAGNPPA 238
+DMGGG WD V RALRAAYNNPERAV+YLYSGIPE + AVP AGN
Sbjct: 158 MDMGGGMWDTNMVSRALRAAYNNPERAVDYLYSGIPEMAEAAVPVSHFQGDQINAGNNAI 217
Query: 239 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 298
AAP PN+ PL++FPQ + + AG G+L+FLRN+ QFQ LR+MVQ NP
Sbjct: 218 SDNGVAGAAPG---APNSLPLNMFPQETLSGVTGAGLGSLEFLRNNPQFQTLRSMVQRNP 274
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 358
QILQPML ELGKQNP L+R IQEH +FL+LINEPVE EG++ Q +PQ +TVT
Sbjct: 275 QILQPMLLELGKQNPQLLRQIQEHHEEFLQLINEPVEASEGDMFDQPEQDVPQEITVTAA 334
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
++EAIERLEAMGFDR LV+E F AC++NEELA NYLL++ +FED
Sbjct: 335 DQEAIERLEAMGFDRGLVIEAFLACDRNEELAVNYLLENAGDFED 379
>gi|168020994|ref|XP_001763027.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685839|gb|EDQ72232.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 370
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 238/409 (58%), Positives = 282/409 (68%), Gaps = 46/409 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF++EV P D V +VK+ IE QG + +P SQQ+LIHQGKVLKD TT+E
Sbjct: 1 MKISVKTLKGNHFDLEVSPADTVLNVKRQIEDSQGKESFPCSQQLLIHQGKVLKDETTME 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+EN FVVVMLTK+K + +GAS PP+S+ T A
Sbjct: 61 ENKVSENGFVVVMLTKAK-TGAGAS----------------PPSSSGTTQAPAPVAAA-- 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PAPA +PA P PA + + + YGQAASNLVAG+ LE TVQQI
Sbjct: 102 ------------TPPAPARSPATPSPPTPATPAPAPASTYGQAASNLVAGNVLETTVQQI 149
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA-- 238
+DMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIPE + PV G PA
Sbjct: 150 MDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPESAEMRPV--------GGRSPAVA 201
Query: 239 ---QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 295
PA AP GPNA PLDLFPQG+P M GAG LDFLRN+ Q +LRTMVQ
Sbjct: 202 GVPAATPAAPAQAAPAGGPNAAPLDLFPQGMPGMAGGGGAGALDFLRNNPQ-ASLRTMVQ 260
Query: 296 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-VEGGEGNVLGQLASAMPQAVT 354
ANPQILQPMLQELGKQNP L+RLI ++Q +FLRLINE EG EG++LGQLA AMPQ++
Sbjct: 261 ANPQILQPMLQELGKQNPALLRLINDNQAEFLRLINEAGAEGAEGDILGQLAGAMPQSIN 320
Query: 355 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
VTPEEREAI+RLE MGF+R LV+E F AC+KNE+LAANYLL+H ++ED
Sbjct: 321 VTPEEREAIDRLEGMGFERTLVIEAFLACDKNEQLAANYLLEHAGDYED 369
>gi|115444607|ref|NP_001046083.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|50252077|dbj|BAD28007.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113535614|dbj|BAF07997.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|222622305|gb|EEE56437.1| hypothetical protein OsJ_05616 [Oryza sativa Japonica Group]
Length = 369
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 229/404 (56%), Positives = 275/404 (68%), Gaps = 47/404 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEI V+P D + VKK IE +QG D YP QQ+LIH GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP-TV 119
ENKV+E F+VVML+KSK S S + S TS+ P T +TPA +
Sbjct: 61 ENKVSEVGFLVVMLSKSKASGSSGALSSL--------------TSSTPLTRQETPADASR 106
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
A PQ P AP P P PA AP S+ YGQAASNL++GSNL+ T+ Q
Sbjct: 107 AAPQ-------PLVAPTRTPQPERPPAEAP-------SNAYGQAASNLLSGSNLDTTINQ 152
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGN-- 235
+++MGGGSWDR+ V RALRAAYNNPERAVEYLYSGIP + AVP AGGQ N
Sbjct: 153 LMEMGGGSWDRDKVQRALRAAYNNPERAVEYLYSGIPITAEVAVP------AGGQGANTT 206
Query: 236 PPAQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 294
P+ T+ A SG PNA+PL+LFPQG N G AG GTL+FLR++QQFQALR MV
Sbjct: 207 EPSSTRE------ASLSGIPNASPLNLFPQGDANDGGGAGGGTLEFLRHNQQFQALREMV 260
Query: 295 QANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ-LASAMPQAV 353
NPQILQPMLQEL K+NP L+RLIQE+ +FL+LINEP +G +G+ L Q MP ++
Sbjct: 261 HTNPQILQPMLQELSKKNPQLLRLIQENHDEFLQLINEPFDGADGDFLDQPDQDEMPHSI 320
Query: 354 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
VTPEE+EAI RLE MGFDRA V+E FFAC++NE+LAANYLL+H
Sbjct: 321 NVTPEEQEAIGRLEGMGFDRARVIEAFFACDRNEQLAANYLLEH 364
>gi|218190185|gb|EEC72612.1| hypothetical protein OsI_06092 [Oryza sativa Indica Group]
Length = 369
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 229/404 (56%), Positives = 275/404 (68%), Gaps = 47/404 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEI V+P D + VKK IE +QG D YP QQ+LIH GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP-TV 119
ENKV+E F+VVML+KSK S S + S TS+ P T +TPA +
Sbjct: 61 ENKVSEVGFLVVMLSKSKASGSSGALSSL--------------TSSTPLTRQETPADASR 106
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
A PQ P AP P P PA AP S+ YGQAASNL++GSNL+ T+ Q
Sbjct: 107 AAPQ-------PLVAPTRTPQPERPPAEAP-------SNAYGQAASNLLSGSNLDTTINQ 152
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGN-- 235
+++MGGGSWDR+ V RALRAAYNNPERAVEYLYSGIP + AVP AGGQ N
Sbjct: 153 LMEMGGGSWDRDKVQRALRAAYNNPERAVEYLYSGIPITAEVAVP------AGGQGANTT 206
Query: 236 PPAQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMV 294
P+ T+ A SG PNA+PL+LFPQG N G AG GTL+FLR++QQFQALR MV
Sbjct: 207 EPSSTRE------ASLSGIPNASPLNLFPQGDANDGDGAGGGTLEFLRHNQQFQALREMV 260
Query: 295 QANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ-LASAMPQAV 353
NPQILQPMLQEL K+NP L+RLIQE+ +FL+LINEP +G +G+ L Q MP ++
Sbjct: 261 HTNPQILQPMLQELSKKNPQLLRLIQENHDEFLQLINEPFDGADGDFLDQPDQDEMPHSI 320
Query: 354 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
VTPEE+EAI RLE MGFDRA V+E FFAC++NE+LAANYLL+H
Sbjct: 321 NVTPEEQEAIGRLEGMGFDRARVIEAFFACDRNEQLAANYLLEH 364
>gi|255543415|ref|XP_002512770.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223547781|gb|EEF49273.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 359
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 224/410 (54%), Positives = 271/410 (66%), Gaps = 58/410 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPNDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV E+ F+VVML+KSK S S ++ + +A T +++ TPA V
Sbjct: 61 DNKVTEDGFLVVMLSKSKTSGSSGTSSTQ---------PAAATPPTTAPSSNSTPAVEVQ 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PP + +D YG+AASNLVAG NLE T+QQI
Sbjct: 112 PP--------------------------------TQTDTYGEAASNLVAGDNLEQTIQQI 139
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAG--GQAGNPP 237
+DMGGG+WD+ETV RALRAAYNNPERAV+YLYSGIPE V PVA AG + G P
Sbjct: 140 MDMGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPETAEVAVPVAHLPAGQATETGAAP 199
Query: 238 AQTQAQQPAAPAPTSG-PNANPLDLFPQ---GLPNMGSNAGAGTLDFLRNSQQFQALRTM 293
A AP SG PN++PL++FPQ GS G G+LDFLRN+ QFQ LR+M
Sbjct: 200 A----------APLSGVPNSSPLNMFPQEALSAAGGGSAGGLGSLDFLRNNAQFQTLRSM 249
Query: 294 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAV 353
VQANPQILQPMLQELGKQNP L+R+IQEH +FL+L+NEP+EG EG++ Q MP A+
Sbjct: 250 VQANPQILQPMLQELGKQNPQLLRMIQEHHAEFLQLLNEPLEGSEGDIFDQGEQDMPHAI 309
Query: 354 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
VTP E+ AIERL AMGFDRALV+E F AC++NE LAANYLL++ +FED
Sbjct: 310 NVTPAEQAAIERLVAMGFDRALVIEAFLACDRNEVLAANYLLENGGDFED 359
>gi|168057528|ref|XP_001780766.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667784|gb|EDQ54405.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 396
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 228/407 (56%), Positives = 274/407 (67%), Gaps = 21/407 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF++ V ++ VS VK+ IE +QG D +P +QQ+LIHQGKVLKD TT+
Sbjct: 1 MKISVKTLKGNHFDLHVAEDELVSSVKRKIEELQGKDAFPCAQQLLIHQGKVLKDETTMA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKVAEN F+VVMLTK ++ S T ++ + + PAP A
Sbjct: 61 DNKVAENGFLVVMLTKVRLHES--------------NTGTSRWRTRVVAPAAPAPAPAPA 106
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P + + PA A A P + D YGQAASNLVAGS LE+TVQQI
Sbjct: 107 PASTSTPAPAAPAPAPAAVAATPGAGAPAVALCRGTGDGYGQAASNLVAGSALESTVQQI 166
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQ 239
+DMGGG+WDR+TV+RALRAA+NNPERAVEYLYSGIPE VP PVAR G A A
Sbjct: 167 MDMGGGTWDRDTVLRALRAAFNNPERAVEYLYSGIPEAAEVPAPVARGPPAGGAPVAAAP 226
Query: 240 TQAQQPAAPAPTS---GPNANPLDLFPQGLP-NMGSNAGAGTLDFLRNSQQFQALRTMVQ 295
A A + GPNA PLDLFPQG+P G AG G LDFLRN+ QFQALRTMVQ
Sbjct: 227 AGPGAAGAAAVAANPQGPNAAPLDLFPQGMPGAGGGGAGLGALDFLRNNPQFQALRTMVQ 286
Query: 296 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN--EPVEGGEGNVLGQLASAMPQAV 353
ANPQILQPMLQELGKQNP L+RLI E+Q +FLRLIN G+ +G+LA PQ+V
Sbjct: 287 ANPQILQPMLQELGKQNPALLRLINENQAEFLRLINEAGAEGAEGGDAVGRLAGGYPQSV 346
Query: 354 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
VTPEERE+IERLEAMGF+RALV+E F AC+KNE+LAANYLL+H ++
Sbjct: 347 NVTPEERESIERLEAMGFNRALVIEAFLACDKNEQLAANYLLEHAND 393
>gi|194690718|gb|ACF79443.1| unknown [Zea mays]
gi|414589469|tpg|DAA40040.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 365
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 234/405 (57%), Positives = 266/405 (65%), Gaps = 51/405 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F+IEV+P DKV+ VKK IE +Q YPA QQ+LIHQGK
Sbjct: 1 MKVSVKTLKGSSFQIEVEPTDKVAAVKKVIENMQEQASYPADQQVLIHQGK--------- 51
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ G+S SAAPA T + APPT T P QT A A
Sbjct: 52 --------------------NKGSS--SAAPAKT--TANQAPPTQTVPVVPPQTSAAPAA 87
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P VP SA A A A A D YGQAASNLVAGSNLE T+Q I
Sbjct: 88 PAPIVPVSALAATATASAAPAVAVSTEA---------DSYGQAASNLVAGSNLEGTIQSI 138
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
L+MGGG WDR+TV+RALR AYNNPERAVEYLYSGIPEQ VP + Q NP
Sbjct: 139 LEMGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIPEQMDVP---TSPPSIQPVNPVQAA 195
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
QA Q AAP SGPNANPLDLFPQ LPN +NAG G LD LRN+ QFQ L +VQANPQI
Sbjct: 196 QAAQTAAP---SGPNANPLDLFPQSLPNASANAGTGNLDVLRNNVQFQNLLGLVQANPQI 252
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPE 358
LQP+LQELGKQNP +M+LIQE+Q +F+R+INEP+EG E N +L Q+A A + + VTPE
Sbjct: 253 LQPLLQELGKQNPQVMQLIQENQAEFMRMINEPLEGDEENEMMLDQMADA-AETIAVTPE 311
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
E EAI RLE MGFDRALVLEVFFACNKNE+L ANYLLDHMHEF++
Sbjct: 312 ENEAILRLEGMGFDRALVLEVFFACNKNEQLTANYLLDHMHEFDN 356
>gi|413954952|gb|AFW87601.1| hypothetical protein ZEAMMB73_681598 [Zea mays]
Length = 399
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 224/380 (58%), Positives = 270/380 (71%), Gaps = 25/380 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST + A A +AP + T AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPV-- 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ E+APP P APA A ++ +DVY QAASNLV+G+NLE T+QQI
Sbjct: 119 ---ATAETAPPSVQPQAAPAATVA--------ATDDADVYSQAASNLVSGNNLEQTIQQI 167
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----P 236
LDMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE PVARA A GQ N
Sbjct: 168 LDMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAAS 227
Query: 237 PAQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN------AGAGTLDFLRNSQQFQA 289
PAQ P P+P S GPNANPL+LFPQG+P+ GSN AG+G LD LR QFQA
Sbjct: 228 PAQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALRQLPQFQA 287
Query: 290 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASA 348
L +VQANPQILQPMLQELGKQNP ++RLIQE+Q +FLRL+NE EGG GN+LGQLA+A
Sbjct: 288 LLQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPEGGPGGNILGQLAAA 347
Query: 349 MPQAVTVTPEEREAIERLEA 368
+PQ +TVTPEEREAI+R ++
Sbjct: 348 VPQTLTVTPEEREAIQRCKS 367
>gi|388511083|gb|AFK43607.1| unknown [Lotus japonicus]
Length = 228
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/229 (82%), Positives = 204/229 (89%), Gaps = 5/229 (2%)
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
+QQILDMGGGSWDR+TV+RALRAA+NNPERAV+YLYSGIPEQ PPV + A Q GNP
Sbjct: 2 IQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSGIPEQAEAPPVTQMPASAQPGNP 61
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-AGAGTLDFLRNSQQFQALRTMVQ 295
PA A A P+SGPNANPLDLFPQGLPN+GS AGAG+LDFLRNSQQFQALR MVQ
Sbjct: 62 PA---AAPQLANVPSSGPNANPLDLFPQGLPNVGSGPAGAGSLDFLRNSQQFQALRAMVQ 118
Query: 296 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA-SAMPQAVT 354
ANPQILQPMLQELGKQNPHLMRLIQ+HQ DFLRLINEPVEGGEGN+LGQ A +AMPQAV+
Sbjct: 119 ANPQILQPMLQELGKQNPHLMRLIQDHQVDFLRLINEPVEGGEGNILGQPAGAAMPQAVS 178
Query: 355 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
VTPEEREAIERLEAMGFDRA VLEV+FACNKNEELAANYLLDHMHEF++
Sbjct: 179 VTPEEREAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 227
>gi|356521680|ref|XP_003529481.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 343
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 211/403 (52%), Positives = 258/403 (64%), Gaps = 60/403 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV+E+ F+VVML+KSK S S A++ S QP + PA TV
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAAS------------------SVQPASN---PATTV- 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
S+ S PP P A + + AP ++ +D YG AASNLVAGSNLE T+QQI
Sbjct: 99 ---SMSNSTPPSDPPVQTQAANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQI 155
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+DMGGG+WDR+TV RALRAAYNNPERA++YLYSGIPE V +AG +G P
Sbjct: 156 MDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQTAGMSSGAVPV-- 213
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
GPN++PL++FPQ + + AG G+LDFLRN NPQ
Sbjct: 214 ------------GPNSSPLNMFPQETIS-STGAGLGSLDFLRN-------------NPQ- 246
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 360
ELGKQNP L+RLIQEH +FL+LINEPVEG EG++ Q MP A+ VTP E+
Sbjct: 247 ------ELGKQNPGLLRLIQEHHGEFLQLINEPVEGSEGDMFEQPEQDMPHAINVTPAEQ 300
Query: 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
EAI RLEAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 301 EAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 343
>gi|242060736|ref|XP_002451657.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
gi|241931488|gb|EES04633.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
Length = 369
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 223/405 (55%), Positives = 270/405 (66%), Gaps = 43/405 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TL+
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S+QP S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSSGTS------------------SSQP---SNTPAARQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
PP P+ AP PP AP P PA AP + Y AAS+L++GSN++ + Q
Sbjct: 100 PPLDAPQQAPQPPVAPTTTSQPEGLPAQAP-------PNTYDNAASSLLSGSNVDTMINQ 152
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPP 237
+++MGGGSWDR+ V RALRAAYNNPERAVEYLYSGIP + AVP GGQ N
Sbjct: 153 LMEMGGGSWDRDKVQRALRAAYNNPERAVEYLYSGIPVTAEVAVP------IGGQGAN-- 204
Query: 238 AQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
T + P A SG PN PL+LFPQG N G AG G LDFLRN+QQFQA+R MV
Sbjct: 205 --TTDRAPTGEAGLSGIPNTAPLNLFPQGGSNAGGGAGGGPLDFLRNNQQFQAVREMVHT 262
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ-LASAMPQAVTV 355
NPQILQPML EL KQNP ++RLI+E+ +FL+L+NEP EGGEG+ L Q MP A++V
Sbjct: 263 NPQILQPMLVELSKQNPQILRLIEENHDEFLQLLNEPFEGGEGDFLDQPEEDEMPHAISV 322
Query: 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
TPEE++AI RLE+MGFDRA V+E F AC++NEELAANYLL+H E
Sbjct: 323 TPEEQDAIGRLESMGFDRARVIEAFIACDRNEELAANYLLEHAGE 367
>gi|42572181|ref|NP_974181.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198159|gb|AEE36280.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 351
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 219/408 (53%), Positives = 266/408 (65%), Gaps = 62/408 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK SG S A+ QT+S + P S TT+S PA A
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQAS----VQTSSVSQPVSA--TTSSTKPA---A 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P S +S+P PA+P PA A +D YGQAAS LV+GS+LE VQQI
Sbjct: 109 P--STTQSSPVPASPIPAQEQPAAQ-----------TDTYGQAASTLVSGSSLEQMVQQI 155
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPP 237
++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 156 MEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---- 211
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
P APA + GPN++PLDLFPQ + GTL+FLRN+
Sbjct: 212 -------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNND------------ 251
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTV 355
QELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ V
Sbjct: 252 --------QELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINV 303
Query: 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
TP E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FED
Sbjct: 304 TPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 351
>gi|226492672|ref|NP_001148810.1| LOC100282427 [Zea mays]
gi|195622286|gb|ACG32973.1| DNA repair protein RAD23-1 [Zea mays]
gi|238014028|gb|ACR38049.1| unknown [Zea mays]
gi|413926349|gb|AFW66281.1| DNA repair protein RAD23-1 isoform 1 [Zea mays]
gi|413926350|gb|AFW66282.1| DNA repair protein RAD23-1 isoform 2 [Zea mays]
gi|413926351|gb|AFW66283.1| DNA repair protein RAD23-1 isoform 3 [Zea mays]
Length = 368
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 221/405 (54%), Positives = 265/405 (65%), Gaps = 44/405 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQH---------------------SNTPATRQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
PP P+ AP PP AP P PA AP + + AASNL++G N++ + Q
Sbjct: 100 PPLEAPQQAPQPPVAPITTSQPEGLPAQAP--------NTHDNAASNLLSGRNVDTIINQ 151
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPP 237
+++MGGGSWD++ V RALRAAYNNPERAVEYLYSGIP + AVP GGQ N
Sbjct: 152 LMEMGGGSWDKDKVQRALRAAYNNPERAVEYLYSGIPVTAEIAVP------IGGQGAN-- 203
Query: 238 AQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
T + P A SG PN PLDLFPQG N G AG G LDFLRN+ QFQA+R MV
Sbjct: 204 --TTDRAPTGEAGLSGIPNTAPLDLFPQGASNAGGGAGGGPLDFLRNNPQFQAVREMVHT 261
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ-LASAMPQAVTV 355
NPQILQPML EL KQNP ++RLI+E+ +FL+L+NEP EGGEG+ L Q MP A++V
Sbjct: 262 NPQILQPMLVELSKQNPQILRLIEENHDEFLQLLNEPFEGGEGDFLDQPEEDEMPHAISV 321
Query: 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
TPEE+EAI RLE+MGFDRA V+E F AC++NEELAANYLL+H E
Sbjct: 322 TPEEQEAIGRLESMGFDRARVIEAFLACDRNEELAANYLLEHAGE 366
>gi|449515726|ref|XP_004164899.1| PREDICTED: putative DNA repair protein RAD23-1-like, partial
[Cucumis sativus]
Length = 386
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 214/387 (55%), Positives = 259/387 (66%), Gaps = 41/387 (10%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V VKKNIE VQG D YP SQQ+LIH GKVLKD TTL ENK+ E+ F+VVML+KSK
Sbjct: 35 VLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLTENKITEDGFLVVMLSKSK---- 90
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
AP + +++ T T + S+PE APA PA +
Sbjct: 91 -------APGSTGSSSTQTTTIVPTTTPTPNS--------TSIPE------APA-QPAAS 128
Query: 143 PAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYN 202
A + P +++ D YGQAASNLV+G+NLE T+Q+I+DMGGGSWDRETV RALRAAYN
Sbjct: 129 RNVAISDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYN 188
Query: 203 NPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAP--TSGPNANPL 259
NPERAV+YLYSGIPE V PVAR PP A AP + GPN++PL
Sbjct: 189 NPERAVDYLYSGIPETAEVAAPVAR---------PPTGQPIDAGGATAPPVSGGPNSSPL 239
Query: 260 DLFPQ---GLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLM 316
++FPQ G G+L+FLRN+ QFQALR+MVQANPQILQ MLQELGKQNP L+
Sbjct: 240 NMFPQESLAAAAGGGGGSLGSLEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLL 299
Query: 317 RLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALV 376
RLIQ+HQ +FL+LINEP+EG EG++ Q MP A+ VTP E++AIERLEAMGFDR V
Sbjct: 300 RLIQDHQAEFLQLINEPLEGFEGDLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQV 359
Query: 377 LEVFFACNKNEELAANYLLDHMHEFED 403
+E F AC++NEELAANYLL+H EFED
Sbjct: 360 IEAFLACDRNEELAANYLLEHGGEFED 386
>gi|413926348|gb|AFW66280.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 369
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 216/406 (53%), Positives = 261/406 (64%), Gaps = 45/406 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQH---------------------SNTPATRQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
PP P+ AP PP AP P PA AP + + AASNL++G N++ + Q
Sbjct: 100 PPLEAPQQAPQPPVAPITTSQPEGLPAQAP--------NTHDNAASNLLSGRNVDTIINQ 151
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPP 237
+++MGGGSWD++ V RALRAAYNNPERAVEYLYSGIP + AVP GGQ N
Sbjct: 152 LMEMGGGSWDKDKVQRALRAAYNNPERAVEYLYSGIPVTAEIAVP------IGGQGAN-- 203
Query: 238 AQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGAGT-LDFLRNSQQFQALRTMVQ 295
T + P A SG PN PLDLFPQ + G LDFLRN+ QFQA+R MV
Sbjct: 204 --TTDRAPTGEAGLSGIPNTAPLDLFPQQGASNAGGGAGGGPLDFLRNNPQFQAVREMVH 261
Query: 296 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ-LASAMPQAVT 354
NPQILQPML EL KQNP ++RLI+E+ +FL+L+NEP EGGEG+ L Q MP A++
Sbjct: 262 TNPQILQPMLVELSKQNPQILRLIEENHDEFLQLLNEPFEGGEGDFLDQPEEDEMPHAIS 321
Query: 355 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
VTPEE+EAI RLE+MGFDRA V+E F AC++NEELAANYLL+H E
Sbjct: 322 VTPEEQEAIGRLESMGFDRARVIEAFLACDRNEELAANYLLEHAGE 367
>gi|7715605|gb|AAF68123.1|AC010793_18 F20B17.8 [Arabidopsis thaliana]
Length = 367
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 206/408 (50%), Positives = 259/408 (63%), Gaps = 46/408 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK S G++ ++ + S P ++ P T +
Sbjct: 61 ENKVTEEGFLVVMLSKSK--SGGSAGQASVQCVRLLLFHSLFPLPHLRLSSIYNPVFTCS 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ ++ +D YGQAAS LV+GS+LE VQQI
Sbjct: 119 -------------------------CFTYSCSRTTGTDTYGQAASTLVSGSSLEQMVQQI 153
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP-PVARASAGGQAGNPP 237
++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP P A+ + G A
Sbjct: 154 MEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA---- 209
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
P APA + GPN++PLDLFPQ + GTL+FLRN+ Q L + A
Sbjct: 210 -------PVAPA-SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQVAIL--TISAF 259
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTV 355
+PMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ V
Sbjct: 260 SLNCEPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINV 319
Query: 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
TP E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FED
Sbjct: 320 TPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 367
>gi|326529487|dbj|BAK04690.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 367
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 212/400 (53%), Positives = 264/400 (66%), Gaps = 41/400 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+ D + VKKNIE +QG D YP QQ+LIH GKVLKD +TL+
Sbjct: 1 MKLTVKTLKGTHFEIRVQHNDTIMAVKKNIEEIQGKDSYPWGQQLLIHNGKVLKDESTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V E F+VVML+KSK ++S+ +S QP++T P +
Sbjct: 61 ENQVGEAGFLVVMLSKSK------------------ASASSGGSSAQPSST-----PVTS 97
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
V + P P PA P+S+ D+ AAS+L++GSNL+ + QI
Sbjct: 98 QAPPVAQPQAPQPQVPSTTTSQPERPPAETPLSTV--DI---AASDLLSGSNLDTMINQI 152
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPA 238
++MGGGSWDR+ V RALRAAYNNPERA++YLYSGIP + AVP V GQ N
Sbjct: 153 MEMGGGSWDRDKVQRALRAAYNNPERAIDYLYSGIPVTAEVAVPVV------GQGAN--- 203
Query: 239 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 298
T A P + PN PLDLFPQG + G AG G+LDFLRN+QQFQALR MV NP
Sbjct: 204 -TTAAAPGETGLSGIPNTAPLDLFPQGASHAGGAAGGGSLDFLRNNQQFQALREMVHTNP 262
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL-ASAMPQAVTVTP 357
QILQPMLQEL KQNP L+RLIQE+ +FL+L+NE EGG+G+ L Q MP A++VTP
Sbjct: 263 QILQPMLQELSKQNPQLLRLIQENNDEFLQLLNETFEGGDGDFLDQADQDEMPHAISVTP 322
Query: 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
EE+EAI RLEAMGF+RA V+E FFAC++NE+LAANYLL+H
Sbjct: 323 EEQEAIGRLEAMGFERARVIEAFFACDRNEQLAANYLLEH 362
>gi|414885361|tpg|DAA61375.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 339
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 216/365 (59%), Positives = 254/365 (69%), Gaps = 30/365 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SSS AAPA T + AP T T P T QT A A
Sbjct: 61 ENQVVENNFLVIMLRQNKGSSS------AAPAKV--TANQAPSTQTVPATPPQTSA---A 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P AP P P APA + APA S+ +D YGQA SNLVAGSNLE T++ I
Sbjct: 110 P------DAPAPIVPVSAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSI 163
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
L+MGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P
Sbjct: 164 LEMGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPV 217
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
QA QPA +GPNANPLDLFPQ LPN +NA G LD LRN+ QFQ L +VQANPQI
Sbjct: 218 QAVQPA----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLLGLVQANPQI 273
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPE 358
LQP+LQEL KQNP +M+LIQE+Q +F+RLI+EP+EG E N +L Q+A A + + VTPE
Sbjct: 274 LQPLLQELRKQNPRVMQLIQENQAEFMRLISEPLEGDEENEMMLDQMADAT-ETIAVTPE 332
Query: 359 EREAI 363
E EAI
Sbjct: 333 ENEAI 337
>gi|357138066|ref|XP_003570619.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 368
Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 214/410 (52%), Positives = 259/410 (63%), Gaps = 60/410 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+ D + VKKNIE +QG D YP QQ+LIH GK+LKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQQNDTIMAVKKNIEEIQGKDNYPWGQQLLIHTGKILKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVS----------SSGASTVSAAPANQAQTTSSAPPTSTQPTT 110
EN+V+E+ +VVML+KSK S SS T A P Q Q S+ P PTT
Sbjct: 61 ENQVSEDGSLVVMLSKSKASVSSGASSAQPSSIPVTRQAPPDAQIQAAESSVP----PTT 116
Query: 111 TSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAG 170
TSQ P PA P+++ AS+L++G
Sbjct: 117 TSQPERP-----------------------------PAETPLNT-----VDHVASDLLSG 142
Query: 171 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARAS 228
SNL+ + QI++MGGGSWDR+ V RALRAAYNNPERAV+YLYSGIP + AVP
Sbjct: 143 SNLDTMINQIMEMGGGSWDRDKVQRALRAAYNNPERAVDYLYSGIPVTAEVAVP------ 196
Query: 229 AGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 288
G Q N T A P + PN PL+LFPQG N G AG G+LDFLRN+QQFQ
Sbjct: 197 VGPQGAN---STDAAPPGVTGLSGIPNTAPLNLFPQGASNAGGAAGGGSLDFLRNNQQFQ 253
Query: 289 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ-LAS 347
ALR MV NPQILQPMLQEL KQNP L+RLIQE+ +FL L+NE + G+G+ L Q
Sbjct: 254 ALREMVHTNPQILQPMLQELSKQNPQLLRLIQENNDEFLGLLNENFDAGDGDFLDQPDED 313
Query: 348 AMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
MP A++VTPEE+EAI RLEAMGFDRA V+E FFAC++NE+LA NYLL+H
Sbjct: 314 EMPHAISVTPEEQEAIGRLEAMGFDRARVIEAFFACDRNEQLAVNYLLEH 363
>gi|326528949|dbj|BAJ97496.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 420
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 224/404 (55%), Positives = 275/404 (68%), Gaps = 38/404 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEIE PE V +VK+ IE+ QG +VYPA Q M+I+QGK+LKD TTL+
Sbjct: 1 MKLNVKTLKGTSFEIEATPESSVGEVKRIIESAQGQNVYPADQLMIIYQGKILKDDTTLD 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
NKVAENSF+V+ML+K K SSSGAS+ S AP +Q+Q + P + P P +
Sbjct: 61 ANKVAENSFLVIMLSKPKASSSGASSASKAPVSQSQPAT--------PVAAATPPVPVAS 112
Query: 121 ----PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEAT 176
PP P +A PA P+ P+ A + PA A +S +DVY QAASNLV+G LE T
Sbjct: 113 AARSPPSQAPVAASEPAPPSAQPS-AVSDTPAAAVTASGDADVYSQAASNLVSGGILEQT 171
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-AVPPVARASAGGQAGN 235
VQQILDMGGG+W+R+ V+RALRAAYNNPERA++YLYSGIPE A P + QA N
Sbjct: 172 VQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPESVEAPPVARAPAPAQQAQN 231
Query: 236 PPAQTQAQQPAAPAP--------TSGPNANPLDLFPQGLPN------MGSNAGAGTLDFL 281
A +QAQ AAP P ++GPNANPL+LFPQG+P+ G AGAG LD L
Sbjct: 232 LQAPSQAQ--AAPLPAVQPSGGVSAGPNANPLNLFPQGVPSGGANAGAGVGAGAGALDAL 289
Query: 282 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE-PVEGGEGN 340
R QFQAL +VQANPQILQPMLQELGKQNP ++RLIQE+Q +FLRL+NE P G GN
Sbjct: 290 RQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPESGAGGN 349
Query: 341 VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACN 384
+LG LA+ MPQAV VTPEEREAI+R++ +L + F C
Sbjct: 350 ILGALAAQMPQAVQVTPEEREAIQRVQ-------YILMICFLCK 386
>gi|42572233|ref|NP_974211.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640304|gb|AEE73825.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 299
Score = 350 bits (899), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 203/315 (64%), Positives = 231/315 (73%), Gaps = 46/315 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP--- 117
ENKVAENSF+V+M+ KSK +S+ AS+ SA +QA+ S PP+++QP+ + QTPA
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAG-TSQAK---SIPPSTSQPSISPQTPASVSA 116
Query: 118 -------------------------TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV 152
TV P +PE P PA + PAP APV
Sbjct: 117 PVAPAPTRPPPPAPTPTPAPVAATETVTTP--IPE-------PVPATISSSTPAPDSAPV 167
Query: 153 SSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 212
S DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY
Sbjct: 168 GSQ-GDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLY 226
Query: 213 SGIPEQTAVPPVARASA-GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS 271
+GIPEQ VPPVAR A GQ NPPAQT QQPAA AP SGPNANPLDLFPQGLPN+G
Sbjct: 227 TGIPEQAEVPPVARPPASAGQPANPPAQT--QQPAA-APASGPNANPLDLFPQGLPNVGG 283
Query: 272 NAGAGTLDFLRNSQQ 286
N GAGTLDFLRNSQQ
Sbjct: 284 NPGAGTLDFLRNSQQ 298
>gi|414885366|tpg|DAA61380.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 221
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 150/223 (67%), Positives = 173/223 (77%), Gaps = 13/223 (5%)
Query: 183 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 242
MGGG+WDR+TV+RALRAAYNNPERAVEYLYSGIPEQ VP A + P QA
Sbjct: 1 MGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVP------APPPSSQPVDPVQA 54
Query: 243 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 302
QPA +GPNANPLDLFPQ LPN +NA G LD LRN+ QFQ L +VQANPQILQ
Sbjct: 55 VQPA----QAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLLGLVQANPQILQ 110
Query: 303 PMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEER 360
P+LQEL KQNP +M+LIQE+Q +F+RLI+EP+EG E N +L Q+A A + + VTPEE
Sbjct: 111 PLLQELRKQNPRVMQLIQENQAEFMRLISEPLEGDEENEMMLDQMADAT-ETIAVTPEEN 169
Query: 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
EAI RLE MGFDRALVLEVFFACNKNE+LAANYLLDHMHEF++
Sbjct: 170 EAILRLEGMGFDRALVLEVFFACNKNEQLAANYLLDHMHEFDN 212
>gi|414589472|tpg|DAA40043.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 225
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 153/223 (68%), Positives = 174/223 (78%), Gaps = 9/223 (4%)
Query: 183 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 242
MGGG WDR+TV+RALR AYNNPERAVEYLYSGIPEQ VP + Q NP QA
Sbjct: 1 MGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIPEQMDVP---TSPPSIQPVNPVQAAQA 57
Query: 243 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 302
Q AAP SGPNANPLDLFPQ LPN +NAG G LD LRN+ QFQ L +VQANPQILQ
Sbjct: 58 AQTAAP---SGPNANPLDLFPQSLPNASANAGTGNLDVLRNNVQFQNLLGLVQANPQILQ 114
Query: 303 PMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEER 360
P+LQELGKQNP +M+LIQE+Q +F+R+INEP+EG E N +L Q+A A + + VTPEE
Sbjct: 115 PLLQELGKQNPQVMQLIQENQAEFMRMINEPLEGDEENEMMLDQMADA-AETIAVTPEEN 173
Query: 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
EAI RLE MGFDRALVLEVFFACNKNE+L ANYLLDHMHEF++
Sbjct: 174 EAILRLEGMGFDRALVLEVFFACNKNEQLTANYLLDHMHEFDN 216
>gi|356557201|ref|XP_003546906.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair protein
RAD23-1-like [Glycine max]
Length = 284
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/251 (58%), Positives = 185/251 (73%), Gaps = 16/251 (6%)
Query: 157 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 216
+D YGQAASNLVAGS+LE T+QQI+D+GGGSWDR+TV RALRAAYNNP+RAV+YLYS IP
Sbjct: 46 TDTYGQAASNLVAGSSLEQTIQQIMDLGGGSWDRDTVSRALRAAYNNPKRAVDYLYSRIP 105
Query: 217 E--QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGP--NANPLDLFPQGLPNMGSN 272
E + AVP A P +QT GP N++PL++ PQ +P G+
Sbjct: 106 EAAEIAVPA---------APYPISQTTETGGVTAGAVWGPVPNSSPLNMSPQVIPVSGAG 156
Query: 273 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 332
AG G+L+ + Q+FQALR+MVQ+NPQILQP+LQELGKQN L RLIQEH +FL+LIN+
Sbjct: 157 AGIGSLELYKKCQEFQALRSMVQSNPQILQPVLQELGKQNLSLSRLIQEHHGEFLQLIND 216
Query: 333 PVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 392
PVEG EG++ Q MP A+ VTP E+EAI RLEAMGFDRA V+E AC+++E+LAAN
Sbjct: 217 PVEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIE---ACDRDEQLAAN 273
Query: 393 YLLDHMHEFED 403
YLL++ +FED
Sbjct: 274 YLLENAGDFED 284
>gi|223945395|gb|ACN26781.1| unknown [Zea mays]
Length = 294
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 163/293 (55%), Positives = 196/293 (66%), Gaps = 24/293 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT+FEIE P+ V+DVK+ IET QG Y A QQMLI+QGK+LKD TTLE
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N VAENSF+V+ML+K+K SSSGAST + A A +AP + T AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPV-- 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ E+APP P APA A ++ +DVY QAASNLV+G+NLE T+QQI
Sbjct: 119 ---ATAETAPPSVQPQAAPAATVA--------ATDDADVYSQAASNLVSGNNLEQTIQQI 167
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----P 236
LDMGGG+W+R+TV+RALRAAYNNPERA++YLYSGIPE PVARA A GQ N
Sbjct: 168 LDMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENVEAQPVARAPAAGQQTNQQAAS 227
Query: 237 PAQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSN------AGAGTLDFLR 282
PAQ P P+P S GPNANPL+LFPQG+P+ GSN AG+G LD LR
Sbjct: 228 PAQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALR 280
>gi|358346473|ref|XP_003637292.1| RAD23 protein [Medicago truncatula]
gi|355503227|gb|AES84430.1| RAD23 protein [Medicago truncatula]
Length = 213
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 137/230 (59%), Positives = 167/230 (72%), Gaps = 26/230 (11%)
Query: 183 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 242
MGGGSWDR+TV RALRAA+NNPERAV+YLYSGIPE V A A
Sbjct: 1 MGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEV----------------AVPAA 44
Query: 243 QQPAAPAPTSG---------PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 293
Q P+ P T G PN++PL++FPQ + G+ AGAG+LDFLRN+ QFQALRTM
Sbjct: 45 QYPSNPTETGGVTTGVVPGVPNSSPLNMFPQETIS-GAGAGAGSLDFLRNNPQFQALRTM 103
Query: 294 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAV 353
VQ+NPQILQP+LQELGKQNP L+RLI EH ++FL+LINEP++G EG+ Q MP AV
Sbjct: 104 VQSNPQILQPVLQELGKQNPGLLRLIDEHHSEFLQLINEPMDGTEGDNFDQAEQDMPHAV 163
Query: 354 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
VTP E+EAI RLEAMGFDRA V+E F AC+++E+LAANYLL++ +FED
Sbjct: 164 NVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 213
>gi|90079451|dbj|BAE89405.1| unnamed protein product [Macaca fascicularis]
Length = 409
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 167/426 (39%), Positives = 236/426 (55%), Gaps = 55/426 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPVS------------SSVSDVYGQA 163
P S P SA + PAPA A PA PA PV+ SS S+++ A
Sbjct: 121 STPASSTPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 220
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 221 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 278
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 279 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 337
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 338 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 396
Query: 390 AANYLL 395
AAN+LL
Sbjct: 397 AANFLL 402
>gi|410225240|gb|JAA09839.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 168/433 (38%), Positives = 239/433 (55%), Gaps = 65/433 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ T S T Q + P P
Sbjct: 61 EYKIEEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTCSTTTTVAQ----APIPVPA 116
Query: 119 VAPPQSVPESAPPPAAPA---PAPAPA-----PAPAPAPAPVS------------SSVSD 158
+A P S P S PP +A A PAPA A PA PA PV+ SS S+
Sbjct: 117 LA-PTSTPASIPPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSN 175
Query: 159 VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP-- 216
++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGD 232
Query: 217 -EQTAV--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 273
E AV PP A ++ Q+ A +SG G P
Sbjct: 233 RESQAVVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP------ 275
Query: 274 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 333
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEP
Sbjct: 276 ----LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEP 331
Query: 334 VEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACN 384
V+ + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 332 VQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACE 391
Query: 385 KNEELAANYLLDH 397
KNE LAAN+LL
Sbjct: 392 KNENLAANFLLQQ 404
>gi|4506387|ref|NP_002865.1| UV excision repair protein RAD23 homolog B isoform 1 [Homo sapiens]
gi|397479268|ref|XP_003810947.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pan paniscus]
gi|426362613|ref|XP_004048452.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Gorilla gorilla gorilla]
gi|1709985|sp|P54727.1|RD23B_HUMAN RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=hHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|498148|dbj|BAA04652.1| XP-C repair complementing protein (p58/HHR23B) [Homo sapiens]
gi|24414631|gb|AAN47194.1| RAD23 homolog B (S. cerevisiae) [Homo sapiens]
gi|60819839|gb|AAX36514.1| RAD23-like B [synthetic construct]
gi|61363174|gb|AAX42348.1| RAD23-like B [synthetic construct]
gi|119579421|gb|EAW59017.1| RAD23 homolog B (S. cerevisiae), isoform CRA_b [Homo sapiens]
gi|193785017|dbj|BAG54170.1| unnamed protein product [Homo sapiens]
gi|261858390|dbj|BAI45717.1| RAD23 homolog B [synthetic construct]
Length = 409
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 166/426 (38%), Positives = 235/426 (55%), Gaps = 55/426 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPVS------------SSVSDVYGQA 163
P P SA + PAPA A PA PA PV+ SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 220
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 221 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 278
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 279 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 337
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 338 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 396
Query: 390 AANYLL 395
AAN+LL
Sbjct: 397 AANFLL 402
>gi|54696272|gb|AAV38508.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|54696274|gb|AAV38509.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|60654195|gb|AAX29790.1| RAD23-like B [synthetic construct]
gi|60831141|gb|AAX36959.1| RAD23-like B [synthetic construct]
gi|61365892|gb|AAX42780.1| RAD23-like B [synthetic construct]
gi|61365900|gb|AAX42781.1| RAD23-like B [synthetic construct]
Length = 410
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 166/426 (38%), Positives = 235/426 (55%), Gaps = 55/426 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPVS------------SSVSDVYGQA 163
P P SA + PAPA A PA PA PV+ SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 220
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 221 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 278
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 279 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 337
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 338 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 396
Query: 390 AANYLL 395
AAN+LL
Sbjct: 397 AANFLL 402
>gi|387849175|ref|NP_001248717.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815240|gb|AFE79494.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815242|gb|AFE79495.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815244|gb|AFE79496.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815246|gb|AFE79497.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|383410191|gb|AFH28309.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|384942154|gb|AFI34682.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 409
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 166/426 (38%), Positives = 235/426 (55%), Gaps = 55/426 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPVS------------SSVSDVYGQA 163
P P SA + PAPA A PA PA PV+ SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 220
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 221 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 278
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 279 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 337
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 338 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 396
Query: 390 AANYLL 395
AAN+LL
Sbjct: 397 AANFLL 402
>gi|6587822|gb|AAF18513.1|AC010924_26 Contains similarity to gb|Y12014 RAD23 protein isoform II from
Daucus carota and is a member of the Ubiquitin PF|00240
family containing a UBA PF|00627 domain. EST gb|H37284
comes from this gene [Arabidopsis thaliana]
Length = 246
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 138/286 (48%), Positives = 167/286 (58%), Gaps = 50/286 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE Q D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E F+VVML+KSK T SSA P+STQ AP+
Sbjct: 61 ENKVTEEGFLVVMLSKSK------------------TASSAGPSSTQ------LAAPSTT 96
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+VP S P P ++ SD YGQAAS LV+GS++E VQQI
Sbjct: 97 QSIAVPASNSTPVQEQP----------------TAQSDTYGQAASTLVSGSSIEQMVQQI 140
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE +P + G
Sbjct: 141 MEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIPATNLSGVG---------- 190
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQ 286
++ AP P+ GPN++PLDLFPQ + + GTL+FLR + Q
Sbjct: 191 SGRELTAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFLRGNDQ 236
>gi|410259964|gb|JAA17948.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 164/426 (38%), Positives = 233/426 (54%), Gaps = 55/426 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ T S T Q APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTCSTTTTVAQAPIPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPVS------------SSVSDVYGQA 163
P P SA + PAPA A PA PA PV+ SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 220
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 221 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 278
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 279 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 337
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 338 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 396
Query: 390 AANYLL 395
AAN+LL
Sbjct: 397 AANFLL 402
>gi|1044899|emb|CAA63146.1| MHR23B [Mus musculus]
gi|20380714|gb|AAH27747.1| RAD23b homolog (S. cerevisiae) [Mus musculus]
gi|148670319|gb|EDL02266.1| RAD23b homolog (S. cerevisiae), isoform CRA_c [Mus musculus]
gi|1587278|prf||2206377B MHR23B gene
Length = 416
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 159/438 (36%), Positives = 232/438 (52%), Gaps = 72/438 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQ------------- 107
E K+ E +FVVVM+TK K + +A PA +++ +P T +
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPATTQPSSTPSPTTVSSSPAVAAAQAPAPT 114
Query: 108 ------PTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAP---APAPAPA-PVSSSVS 157
T S TPA T A + P A P PA PA P +PAPA + P SS S
Sbjct: 115 PALAPTSTPASTTPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRS 174
Query: 158 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP- 216
+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 217 ---EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 273
Q V P PP P +PA + + +
Sbjct: 232 DRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTTS 271
Query: 274 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 333
G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEP
Sbjct: 272 GGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEP 331
Query: 334 VEGG----------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVL 377
V+ G + + S + VTP+E+EAIERL+A+GF LV+
Sbjct: 332 VQEAGGQGGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVI 391
Query: 378 EVFFACNKNEELAANYLL 395
+ +FAC KNE LAAN+LL
Sbjct: 392 QAYFACEKNENLAANFLL 409
>gi|291382841|ref|XP_002708173.1| PREDICTED: UV excision repair protein RAD23 homolog B [Oryctolagus
cuniculus]
Length = 409
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 160/428 (37%), Positives = 239/428 (55%), Gaps = 55/428 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K ++ A + +N A TT+ + T+T T S TPAP +A
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQ-SNSATTTAVSSSTATAVTQAS-TPAPALA 118
Query: 121 PPQSVPESAPPPAAPAPAPAPA-------PAPAPAPAPVSSSV------------SDVYG 161
P S P S P + + PAPA PA P PV++S S+++
Sbjct: 119 PT-STPASIAPASTTSSEPAPASATKQEKPAEKPVETPVATSPTSTDSTSGDSSRSNLFE 177
Query: 162 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 221
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 178 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP----- 229
Query: 222 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT--LD 279
G+ +Q + P A A T P ++ + + +G L+
Sbjct: 230 ------------GDRESQAVVEPPQA-AGTGAPQSSAVAAGAATTTATTTTTSSGGHPLE 276
Query: 280 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE---- 335
FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGS 336
Query: 336 ------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389
G + + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 337 QGGGGGGSGNAGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 396
Query: 390 AANYLLDH 397
AAN+LL
Sbjct: 397 AANFLLQQ 404
>gi|61370793|gb|AAX43553.1| RAD23-like B [synthetic construct]
Length = 410
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 166/426 (38%), Positives = 235/426 (55%), Gaps = 55/426 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPVS------------SSVSDVYGQA 163
P P SA + PAPA A PA PA PV+ SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 220
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 221 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 278
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGVPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 279 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 337
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 338 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 396
Query: 390 AANYLL 395
AAN+LL
Sbjct: 397 AANFLL 402
>gi|18089249|gb|AAH20973.1| RAD23B protein [Homo sapiens]
gi|61361084|gb|AAX41987.1| RAD23-like B [synthetic construct]
gi|123994101|gb|ABM84652.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|124126815|gb|ABM92180.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
Length = 409
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 166/426 (38%), Positives = 235/426 (55%), Gaps = 55/426 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPVS------------SSVSDVYGQA 163
P P SA + PAPA A PA PA PV+ SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 220
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 221 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 278
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGVPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 279 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 337
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 338 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 396
Query: 390 AANYLL 395
AAN+LL
Sbjct: 397 AANFLL 402
>gi|402896747|ref|XP_003911450.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Papio
anubis]
Length = 409
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 165/426 (38%), Positives = 234/426 (54%), Gaps = 55/426 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPVS------------SSVSDVYGQA 163
P P SA + PAPA A P PA PV+ SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPTEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 220
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 221 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 278
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 279 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 337
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 338 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 396
Query: 390 AANYLL 395
AAN+LL
Sbjct: 397 AANFLL 402
>gi|301762141|ref|XP_002916489.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ailuropoda melanoleuca]
Length = 408
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 156/421 (37%), Positives = 228/421 (54%), Gaps = 46/421 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTT------- 111
E K+ E +FVVVM+TK K ++ A+T + PA +SS P Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNPATTTTVSSSTAPAVAQAPAPAPTLAPT 120
Query: 112 ----SQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVS----SSVSDVYGQA 163
S TPAPT A + P SA P PA PA P A S SS S+++ A
Sbjct: 121 PSPASVTPAPTTASSEPAPASATQPEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 223
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP------- 230
Query: 224 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 283
G+ +Q P A + + P++ +N G L+FLRN
Sbjct: 231 ----------GDRDSQAVVDTPPAVSTGAPPSSVAAAAATTTASTTTANPGGHPLEFLRN 280
Query: 284 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------ 337
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 281 QPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGG 340
Query: 338 ---EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 394
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+L
Sbjct: 341 GGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFL 400
Query: 395 L 395
L
Sbjct: 401 L 401
>gi|171906578|ref|NP_033037.2| UV excision repair protein RAD23 homolog B [Mus musculus]
gi|341941948|sp|P54728.2|RD23B_MOUSE RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=mHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|74144435|dbj|BAE36067.1| unnamed protein product [Mus musculus]
gi|74144449|dbj|BAE36071.1| unnamed protein product [Mus musculus]
gi|74145328|dbj|BAE36124.1| unnamed protein product [Mus musculus]
gi|74211909|dbj|BAE29298.1| unnamed protein product [Mus musculus]
Length = 416
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 162/439 (36%), Positives = 232/439 (52%), Gaps = 74/439 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP------------ 108
E K+ E +FVVVM+TK K + +A PA Q +S+ PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 109 --------TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAP---APAPAPA-PVSSSV 156
T S PA T A + P A P PA PA P +PAPA + P SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 157 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 216
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 217 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 272
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 273 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 332
+G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 330
Query: 333 PV-EGGE---------------GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALV 376
PV E G G + + S + VTP+E+EAIERL+A+GF LV
Sbjct: 331 PVQEAGSQGGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLV 390
Query: 377 LEVFFACNKNEELAANYLL 395
++ +FAC KNE LAAN+LL
Sbjct: 391 IQAYFACEKNENLAANFLL 409
>gi|70778952|ref|NP_001020446.1| UV excision repair protein RAD23 homolog B [Rattus norvegicus]
gi|123789085|sp|Q4KMA2.1|RD23B_RAT RecName: Full=UV excision repair protein RAD23 homolog B
gi|68534740|gb|AAH98674.1| RAD23 homolog B (S. cerevisiae) [Rattus norvegicus]
gi|149037170|gb|EDL91701.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Rattus norvegicus]
Length = 415
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 160/431 (37%), Positives = 231/431 (53%), Gaps = 59/431 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGA-------------STVSAAPANQAQTTSSAPPTSTQ 107
E K+ E +FVVVM+TK K +S + S+ A AQ + P +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTSAVPATTQQSSSPSTTTVSSSPAAAVAQAPAPTPALAPT 120
Query: 108 PTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAP---APAPAPA-PVSSSVSDVYGQA 163
T S TPA T A + P A P PA PA P +PAPA + P SS S+++ A
Sbjct: 121 STPASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDA 180
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQT 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 279
V P PP P +PA + + +G L+
Sbjct: 238 VVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTTSGGHPLE 277
Query: 280 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-- 337
FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 278 FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 337
Query: 338 -------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACN 384
G + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 338 QGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACE 397
Query: 385 KNEELAANYLL 395
KNE LAAN+LL
Sbjct: 398 KNENLAANFLL 408
>gi|332222429|ref|XP_003260372.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Nomascus leucogenys]
Length = 409
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 164/426 (38%), Positives = 233/426 (54%), Gaps = 55/426 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQLTFWIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPVS------------SSVSDVYGQA 163
P P S + PAPA A PA PA PV+ SS S+++ A
Sbjct: 121 STPASITPASVTASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 220
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 221 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 278
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 279 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 337
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 338 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 396
Query: 390 AANYLL 395
AAN+LL
Sbjct: 397 AANFLL 402
>gi|363744612|ref|XP_429175.3| PREDICTED: UV excision repair protein RAD23 homolog B [Gallus
gallus]
Length = 403
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 156/421 (37%), Positives = 225/421 (53%), Gaps = 51/421 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFRIDIDPEETVKALKEKIESERGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKV------------SSSGASTVSAAPANQAQTTSSAPPTSTQP 108
E K+ E +FVVVM+TK K S++G S +AAP + T +A P
Sbjct: 61 EYKIDEKNFVVVMVTKPKAATAATTATQQTNSTTGVSVTTAAPTPVSAPTPAAAPVPAPD 120
Query: 109 TTTSQTPAPTV-APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNL 167
TT A + P S P+ P PA AP + +S S+++ A S L
Sbjct: 121 PTTPAPAAVACESEPVSTPKEEKPAEKPADAPTAVSLSSNESTTGDTSRSNLFEDAISAL 180
Query: 168 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVA 225
V G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q P
Sbjct: 181 VTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDNQAVAEPTQ 237
Query: 226 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 285
AS G +Q+ AA T +P ++ G L+FLRN
Sbjct: 238 AASTG--------TSQSSAVAAAVAT--------------IPTTATSLGGHPLEFLRNQP 275
Query: 286 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 345
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F+ ++NEPV + G
Sbjct: 276 QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIHMLNEPVIESRQGLSGSD 335
Query: 346 ASAMPQAVT-----------VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 394
SA V VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+L
Sbjct: 336 DSASTGGVAEAGNGHMSYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFL 395
Query: 395 L 395
L
Sbjct: 396 L 396
>gi|327493261|gb|AEA86337.1| putative DNA repair protein [Solanum nigrum]
Length = 166
Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 132/166 (79%), Positives = 140/166 (84%), Gaps = 2/166 (1%)
Query: 213 SGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 272
SGIPE VPPVA + QAGN PAQ Q AP P GPNA+PL+LFPQGLP++GSN
Sbjct: 1 SGIPEAAEVPPVAGSPPSVQAGNQPAQPQPAAQPAPIPAGGPNADPLNLFPQGLPSVGSN 60
Query: 273 -AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 331
AGA TLDFLRNSQQFQALR MVQANPQILQPMLQELGKQNPHLMRLIQEHQ DFLRLIN
Sbjct: 61 TAGANTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLIN 120
Query: 332 EPVEGGEG-NVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALV 376
EPVEGGEG NVLGQLA+AMPQA++VTPEEREAIERLE MGFD LV
Sbjct: 121 EPVEGGEGTNVLGQLAAAMPQAISVTPEEREAIERLEQMGFDHDLV 166
>gi|45829444|gb|AAH68193.1| Rad23b protein [Mus musculus]
Length = 415
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 163/439 (37%), Positives = 231/439 (52%), Gaps = 75/439 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPT---------------- 104
E K+ E +FVVVM+TK K + +A PA Q +S+ PT
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 105 ----STQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAP---APAPAPA-PVSSSV 156
T S PA T A + P A P PA PA P +PAPA + P SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 157 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 216
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 217 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 272
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 273 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 332
+G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLL-ALLQQIGRENPQLLQQISQHQEHFIQMLNE 329
Query: 333 PV-EGGE---------------GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALV 376
PV E G G + + S + VTP+E+EAIERL+A+GF LV
Sbjct: 330 PVQEAGSQGGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLV 389
Query: 377 LEVFFACNKNEELAANYLL 395
L+ +FAC KNE LAAN+LL
Sbjct: 390 LQAYFACEKNENLAANFLL 408
>gi|57094213|ref|XP_538778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Canis lupus familiaris]
Length = 406
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 153/423 (36%), Positives = 229/423 (54%), Gaps = 52/423 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +T + A Q+ ++ +S+ T Q PAP V
Sbjct: 61 EYKIDEKNFVVVMVTKPK----AVTTPAPATTQQSNPATTTTVSSSTAPTVVQAPAPPVL 116
Query: 121 PPQSVPESAPPPAAPAPAPAPA-------PAPAPAPAPVS------------SSVSDVYG 161
P P S P A + PAP PA PA PV+ SS S+++
Sbjct: 117 APTPSPASVTPAPATSSEPAPTSVTQQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFE 176
Query: 162 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 221
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 177 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP----- 228
Query: 222 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 281
G+ +Q P A + + P++ ++ G L+FL
Sbjct: 229 ------------GDRESQAVVDTPPAVSTGAPPSSVAAAAATTTASTTTASPGGHPLEFL 276
Query: 282 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---- 337
RN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 RNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQG 336
Query: 338 -----EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 392
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN
Sbjct: 337 GGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAAN 396
Query: 393 YLL 395
+LL
Sbjct: 397 FLL 399
>gi|62898690|dbj|BAD97199.1| UV excision repair protein RAD23 homolog B variant [Homo sapiens]
Length = 409
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 164/426 (38%), Positives = 233/426 (54%), Gaps = 55/426 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPVS------------SSVSDVYGQA 163
P P SA + PAPA A PA PA PV+ SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 220
S LV G + E V +I+ MG ++RE VI ALRA++NNP+R VEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRGVEYLLMGIPGDRESQA 237
Query: 221 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 278
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGVPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 279 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 337
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 338 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389
+ + S + VTP+E+EAI RL+A+GF LV++ +FAC KNE L
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIGRLKALGFPEGLVIQAYFACEKNENL 396
Query: 390 AANYLL 395
AAN+LL
Sbjct: 397 AANFLL 402
>gi|392884316|gb|AFM90990.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 159/421 (37%), Positives = 235/421 (55%), Gaps = 61/421 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E FVVVM+TK K S P+ QA T A P++ QP +T+ T P +
Sbjct: 61 EYKIDEEKFVVVMITKPKSS----------PSVQAAATQPATPSTPQPASTTPTVPPASS 110
Query: 121 P---PQSVP-------ESAPPPAAPAPAPAPAPAPAPAPAPVSSS----VSDVYGQAASN 166
P ++VP +A P + + + + +P+ + + +S S ++ A S
Sbjct: 111 PTATTETVPTNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDVATSA 170
Query: 167 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 226
LV G E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP + AR
Sbjct: 171 LVTGQQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGER-----AR 222
Query: 227 ASAGG-QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 285
+S Q A T + QPAAPAPTS N L+FLRN
Sbjct: 223 SSVNNPQQTTGTACTGSAQPAAPAPTSRENP---------------------LEFLRNQP 261
Query: 286 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 345
QF +R ++Q NP +L +L +LG++NPHL++ I +HQ +F++++NEP++ V +
Sbjct: 262 QFHQMRQILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEVA--V 319
Query: 346 ASAMPQA---VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 402
SA Q + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+
Sbjct: 320 TSAGEQQMDHLQVTPQEKEAIERLKALGFPEGLVVQAYFACEKNENLAANFLLQ--QNFD 377
Query: 403 D 403
D
Sbjct: 378 D 378
>gi|348570354|ref|XP_003470962.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Cavia
porcellus]
Length = 409
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 159/434 (36%), Positives = 234/434 (53%), Gaps = 71/434 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTT-----------------SSAPP 103
E K+ E +FVVVM+TK K + + APA Q++ +S P
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTPAPATTQQSSPVSTTTVSSSTATAVAQASTPA 114
Query: 104 TSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPA---PAPAPVS------- 153
+ PT+ TPAP +AP + S P PA+ A PA PA PA +P S
Sbjct: 115 PALAPTS---TPAP-IAPAVTTASSEPVPASAAQQEKPAEKPAETPPASSPTSTDNTSGD 170
Query: 154 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 213
SS S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 171 SSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLM 227
Query: 214 GIP---EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 270
GIP E AV +A++ G A T+ +P
Sbjct: 228 GIPGDRESQAVVDPPQAASTGAPQASAVAAAGATTTAATTTTSSGGHP------------ 275
Query: 271 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 330
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++
Sbjct: 276 -------LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQML 328
Query: 331 NEPVEGG---------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFF 381
NEPV+ + + S + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 329 NEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 388
Query: 382 ACNKNEELAANYLL 395
AC KNE LAAN+LL
Sbjct: 389 ACEKNENLAANFLL 402
>gi|392884282|gb|AFM90973.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 159/421 (37%), Positives = 235/421 (55%), Gaps = 61/421 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E FVVVM+TK K S P+ QA T A P++ QP +T+ T P +
Sbjct: 61 EYKIDEEKFVVVMITKPKSS----------PSVQAAATQPATPSTPQPASTTPTVPPASS 110
Query: 121 P---PQSVP-------ESAPPPAAPAPAPAPAPAPAPAPAPVSSS----VSDVYGQAASN 166
P ++VP +A P + + + + +P+ + + +S S ++ A S
Sbjct: 111 PTATTETVPTNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSGLFDVATSA 170
Query: 167 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 226
LV G E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP + AR
Sbjct: 171 LVTGQQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGER-----AR 222
Query: 227 ASAGG-QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 285
+S Q A T + QPAAPAPTS N L+FLRN
Sbjct: 223 SSVNNPQQTTGTACTGSAQPAAPAPTSRENP---------------------LEFLRNQP 261
Query: 286 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 345
QF +R ++Q NP +L +L +LG++NPHL++ I +HQ +F++++NEP++ V +
Sbjct: 262 QFHQMRQILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEVA--V 319
Query: 346 ASAMPQA---VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 402
SA Q + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+
Sbjct: 320 TSAGEQQMDHLQVTPQEKEAIERLKALGFPEGLVVQAYFACEKNENLAANFLLQ--QNFD 377
Query: 403 D 403
D
Sbjct: 378 D 378
>gi|392883244|gb|AFM90454.1| UV excision repair protein RAD23-like B isoform 5 [Callorhinchus
milii]
Length = 378
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 160/423 (37%), Positives = 230/423 (54%), Gaps = 65/423 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E FVVVM+TK K ++P+ QA T A P++ QP +T+ T P V+
Sbjct: 61 EYKIDEEKFVVVMITKPK----------SSPSVQAAATQPATPSTPQPASTTPT-VPPVS 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSV---------------SDVYGQAAS 165
P + E+ P + A P S+S S ++ A S
Sbjct: 110 SPTATTETVPTNTSNELNTAEKPTEKSDEISTSTSTSPSASTIRTSGGAQGSSLFDVATS 169
Query: 166 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP-EQTAVPPV 224
LV G E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP E+T
Sbjct: 170 ALVTGQQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGERT----- 221
Query: 225 ARASAGG-QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 283
R+S Q A T + QPAAPAPTS N L+FLRN
Sbjct: 222 -RSSVNNPQQTTGTAWTGSAQPAAPAPTSRENP---------------------LEFLRN 259
Query: 284 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG 343
QF +R ++Q NP +L +L +LG++NPHL++ I +HQ +F++++NEP++ V
Sbjct: 260 QPQFHQMRQILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEVA- 318
Query: 344 QLASAMPQA---VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
+ SA Q + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 319 -VTSAGEQQMDHLQVTPQEKEAIERLKALGFPEGLVVQAYFACEKNENLAANFLLQ--QN 375
Query: 401 FED 403
F+D
Sbjct: 376 FDD 378
>gi|74209288|dbj|BAE25006.1| unnamed protein product [Mus musculus]
Length = 411
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 159/434 (36%), Positives = 228/434 (52%), Gaps = 69/434 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP------------ 108
E K+ E +FVVVM+TK K + +A PA Q +S+ PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 109 --------TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAP---APAPAPA-PVSSSV 156
T S PA T A + P A P PA PA P +PAPA + P SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 157 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 216
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 217 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 272
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 273 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 332
+G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 330
Query: 333 PVEGGEGNVLGQLASAMPQA-----------VTVTPEEREAIERLEAMGFDRALVLEVFF 381
PV+ G + VTP+E+EAIERL+A+GF LV++ +F
Sbjct: 331 PVQEAGSQGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYF 390
Query: 382 ACNKNEELAANYLL 395
AC KNE LAAN+LL
Sbjct: 391 ACEKNENLAANFLL 404
>gi|395823983|ref|XP_003785253.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Otolemur garnettii]
Length = 413
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 155/428 (36%), Positives = 230/428 (53%), Gaps = 55/428 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSK-VSSSGASTVSAAPANQAQ------------TTSSAPPTSTQ 107
E K+ E +FVVVM+TK K VS+ + +A +N + P +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPAAAAAQQSNPVTTTPVTSSTATTVAQAPTPAPAPA 120
Query: 108 PTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV-----SSSVSDVYGQ 162
T S TPA T P+ P SA PA PA P A +P P SS S+++
Sbjct: 121 STPVSVTPASTTTSPEPAPASATKQEKPAEKPAETPV-ATSPTPTDSTSGDSSRSNLFED 179
Query: 163 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 222
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP------ 230
Query: 223 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPL---DLFPQGLPNMGSNAGAGTLD 279
G+ +Q P A A T P ++ + +++G L+
Sbjct: 231 -----------GDRESQAVVDPPQA-AGTGTPQSSAVAAAAATTTATTTTTTSSGGHPLE 278
Query: 280 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-- 337
FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 279 FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 338
Query: 338 ----------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 387
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE
Sbjct: 339 QGGGGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNE 398
Query: 388 ELAANYLL 395
LAAN+LL
Sbjct: 399 NLAANFLL 406
>gi|74178713|dbj|BAE34014.1| unnamed protein product [Mus musculus]
Length = 416
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 159/439 (36%), Positives = 228/439 (51%), Gaps = 74/439 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP------------ 108
E K+ E +FVVVM+TK K + +A PA Q +S+ PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 109 --------TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAP---APAPAPA-PVSSSV 156
T S PA T A + P A P PA PA P +PAPA + P SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 157 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 216
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 217 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 272
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 273 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 332
+G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 330
Query: 333 PVEGGEGNVLGQLASAMPQA----------------VTVTPEEREAIERLEAMGFDRALV 376
PV+ G + VTP+E+EAIERL+A+GF LV
Sbjct: 331 PVQEAGSQGEGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLV 390
Query: 377 LEVFFACNKNEELAANYLL 395
++ +FAC KNE LAAN+LL
Sbjct: 391 IQAYFACEKNENLAANFLL 409
>gi|392883134|gb|AFM90399.1| UV excision repair protein RAD23-like B protein [Callorhinchus
milii]
Length = 378
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 158/421 (37%), Positives = 234/421 (55%), Gaps = 61/421 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E FVVVM+TK K S P+ QA T A P++ QP +T+ T P +
Sbjct: 61 EYKIDEEKFVVVMITKPKSS----------PSVQAAATQPATPSTPQPASTTPTVPPASS 110
Query: 121 P---PQSVP-------ESAPPPAAPAPAPAPAPAPAPAPAPVSSS----VSDVYGQAASN 166
P ++VP +A P + + + + +P+ + + +S S ++ A S
Sbjct: 111 PTATTETVPTNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDVATSA 170
Query: 167 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 226
LV G E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP + AR
Sbjct: 171 LVTGQQYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGER-----AR 222
Query: 227 ASAGG-QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 285
+S Q A T + QPAAPAPTS N L+FLRN
Sbjct: 223 SSVNNPQQTTGTACTGSAQPAAPAPTSRENP---------------------LEFLRNQP 261
Query: 286 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 345
QF +R ++Q NP +L +L +LG++NPHL++ I +HQ +F++++NEP++ V +
Sbjct: 262 QFHQMRQILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEVA--V 319
Query: 346 ASAMPQA---VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 402
SA Q + VTP+E+EAIERL+A+GF LV++ +FAC KN LAAN+LL F+
Sbjct: 320 TSAGEQQMDHLQVTPQEKEAIERLKALGFPEGLVVQAYFACEKNGNLAANFLLQ--QNFD 377
Query: 403 D 403
D
Sbjct: 378 D 378
>gi|410978805|ref|XP_003995778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Felis catus]
Length = 408
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 158/421 (37%), Positives = 230/421 (54%), Gaps = 46/421 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K ++ A+T + PA +S+ P Q T+ APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNPATTTTVSSTTAPAVVQVPTSPPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPVSSSV------------SDVYGQA 163
P P S + PAPA A PA PA PV++S S+++ A
Sbjct: 121 PTPASITPASTTASSEPAPASATKQEKPAEKPAETPVATSPTSTDSTSGDSSRSNLFEDA 180
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 223
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGD----- 232
Query: 224 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 283
R S P T A Q + A + A+ P G P L+FLRN
Sbjct: 233 --RESQAVVDTPPAVSTGAPQSSVAAAAATTTASTTTASPGGHP----------LEFLRN 280
Query: 284 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------ 337
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 281 QPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGG 340
Query: 338 ---EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 394
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+L
Sbjct: 341 GGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFL 400
Query: 395 L 395
L
Sbjct: 401 L 401
>gi|114052667|ref|NP_001039775.1| UV excision repair protein RAD23 homolog B [Bos taurus]
gi|109892954|sp|Q29RK4.1|RD23B_BOVIN RecName: Full=UV excision repair protein RAD23 homolog B
gi|88954168|gb|AAI14134.1| RAD23 homolog B (S. cerevisiae) [Bos taurus]
gi|296484403|tpg|DAA26518.1| TPA: UV excision repair protein RAD23 homolog B [Bos taurus]
Length = 408
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 158/431 (36%), Positives = 226/431 (52%), Gaps = 66/431 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPT----------- 109
E K+ E +FVVVM+TK K + + APA Q+ S+A T + T
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTPAPATTQQSNSAATTTVSSSTAPAVTQAPAPA 114
Query: 110 --------TTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSV----S 157
S TPAPT A + P SA PA P P + S+S S
Sbjct: 115 PASAPTPTPVSVTPAPTTASSEPAPASAAKQEKPAERPVETPVATTPTSTDSTSGDSSRS 174
Query: 158 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP- 216
+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 175 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 231
Query: 217 ---EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 273
Q V P AS G + A +SG G P
Sbjct: 232 DRESQAVVDPPPAASTGAPQSSVAAAAATTTATTTTTSSG-----------GHP------ 274
Query: 274 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 333
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEP
Sbjct: 275 ----LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEP 330
Query: 334 VEGGEGNVLGQLASAMPQA---------VTVTPEEREAIERLEAMGFDRALVLEVFFACN 384
V+ G G + A + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 331 VQEAGGQGGGGGGGSGGIAEAGGGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACE 390
Query: 385 KNEELAANYLL 395
KNE LAAN+LL
Sbjct: 391 KNENLAANFLL 401
>gi|147773186|emb|CAN62701.1| hypothetical protein VITISV_007064 [Vitis vinifera]
Length = 349
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 116/191 (60%), Positives = 145/191 (75%), Gaps = 5/191 (2%)
Query: 154 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 213
S ++D YGQAASN+V+ ++LE T+QQI+D+GGG+WD+ETV RALRAAYNNPERAV+YLYS
Sbjct: 159 SVLADTYGQAASNIVSANHLEQTIQQIMDIGGGNWDKETVTRALRAAYNNPERAVDYLYS 218
Query: 214 GIPEQTAVP-PVARASAGGQAGNPPAQTQAQQPAAPAPTSGP----NANPLDLFPQGLPN 268
GIPE V PVA A + G + T A + AP + N++PL++FPQ +
Sbjct: 219 GIPEAAEVAVPVAHFPADQETGGINSSTAAVAGSGAAPAAPASGVPNSSPLNMFPQETLS 278
Query: 269 MGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 328
+ G G+L+FLRN+ QFQALR MVQANPQILQPMLQELGKQNPHL+RLIQEH +FL+
Sbjct: 279 GAAAGGLGSLEFLRNNHQFQALRAMVQANPQILQPMLQELGKQNPHLLRLIQEHHAEFLQ 338
Query: 329 LINEPVEGGEG 339
LINEP+EG EG
Sbjct: 339 LINEPLEGSEG 349
>gi|417400397|gb|JAA47148.1| Putative nucleotide excision repair factor nef2 rad23 component
[Desmodus rotundus]
Length = 408
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 158/426 (37%), Positives = 229/426 (53%), Gaps = 56/426 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKV--------------SSSGASTVSAAPANQAQTTSSAPPTST 106
E K+ E +FVVVM+TK K +++ + S APA AQ + P +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPTTTQQSNPATTTTISSSTAPA-VAQVPTPTPALAP 119
Query: 107 QPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSV----SDVYGQ 162
PT S TPA T +S P SA PA PA P + S+S S+++
Sbjct: 120 TPTPASVTPASTTVSSESAPASATKQENPAEKPAETPVATSPTSTDSTSGDSSRSNLFED 179
Query: 163 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQ 218
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 236
Query: 219 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 278
V P A+ G + A +SG G P L
Sbjct: 237 AVVDPPPAATTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----------L 275
Query: 279 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV---- 334
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 276 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 335
Query: 335 -----EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389
GG + + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 336 GQGGGSGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 395
Query: 390 AANYLL 395
AAN+LL
Sbjct: 396 AANFLL 401
>gi|348535033|ref|XP_003455006.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 373
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 148/402 (36%), Positives = 232/402 (57%), Gaps = 39/402 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+I++ E+ V +K+ IE +G +++ + Q LI+ GK+L D + L+
Sbjct: 1 MLITLKTLQQQTFKIDIDEEETVRTLKERIEQEKGKEIFSVAGQKLIYAGKILSDDSPLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K + + + +AAPA +++AP + ++TS PA
Sbjct: 61 EYKIDEKNFVVVMVTKPKKAPTASQPSTAAPA----PSTTAPAAQSDSSSTSDKPA---- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
QS + P + P+ A + + S +++ +A SNLV GS+ +A V ++
Sbjct: 113 -EQSSTDDKPEESQPSTTEASSTSVG-----RSGDAANLISEAVSNLVTGSSYDAMVNEM 166
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+ MG ++RE V+ ALRA++NNP+RA+EYL +GIP + ++G A PPA
Sbjct: 167 MLMG---YEREQVVAALRASFNNPDRAMEYLLTGIPSRN-----QGNASGRDAVAPPA-- 216
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+ PA PA + AN + P+ G G L FLRN QFQ +R ++Q N +
Sbjct: 217 -SGTPAVPAGNASAPAN-----TRSSPSAG---GGNPLSFLRNQPQFQVMRQLIQQNAAL 267
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV-----EGGEGNVLGQLASAMPQAVTV 355
L +LQE+G++NP L++ I HQ F++++NEPV GG G + M + V
Sbjct: 268 LPALLQEIGRENPELLQEISSHQEQFIQMLNEPVPEPVPGGGSSGAGGGGGNQM-NYIQV 326
Query: 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
TP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 327 TPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 368
>gi|384248073|gb|EIE21558.1| UV excision repair protein Rad23 [Coccomyxa subellipsoidea C-169]
Length = 382
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 168/403 (41%), Positives = 226/403 (56%), Gaps = 36/403 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+KV KT++G FE+E+ DK+ +VK+ IE VQG+D +PA+ Q++I+QGKVLKD TTLE
Sbjct: 4 VKVTFKTVQGNKFELELDSSDKIENVKQKIEGVQGAD-FPAANQVIIYQGKVLKDDTTLE 62
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E +K++ V A +A + P + T + A A
Sbjct: 63 E---------------NKITHENFVVVMIQRARKAASPKKEEPAAPTTTAPAPAEAAPTA 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P VP P AA A A APA A ++S+ +L+ G+ LE+T+ I
Sbjct: 108 PAAEVPAQQPRAAAVPAAAAAAPAAGAAAGDLNSN----------SLLMGTQLESTIAGI 157
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
++MG +DRE V+RA+RAA+NNP+RAVEYL +GIP P A ++ A
Sbjct: 158 VEMG---FDREEVVRAMRAAFNNPDRAVEYLMTGIPNNVEAPAPAPGASPAAGAVSAAPA 214
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT--LDFLRNSQQFQALRTMVQANP 298
P SGPNA PLD+F P AG LDFLR++ QF ALR +VQ+NP
Sbjct: 215 AGTPATGGGPASGPNAQPLDMFAPQAPAGAGGAGGAAGPLDFLRSNPQFIALRQIVQSNP 274
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP--VEGGEGNVLGQLASAMP---QAV 353
ILQPMLQELGKQNP L+ LI +Q +FLR+INEP V V L +A+P AV
Sbjct: 275 MILQPMLQELGKQNPELLTLINANQQEFLRIINEPPSVIMFWLTVRLLLFAALPPGAVAV 334
Query: 354 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 396
+T EE+ AI+RLE +GFDR +E F C ++E LAAN+L D
Sbjct: 335 HLTEEEQAAIQRLETLGFDRNRCIEAFLLCERDETLAANFLFD 377
>gi|355715051|gb|AES05209.1| RAD23-like protein B [Mustela putorius furo]
Length = 406
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 156/427 (36%), Positives = 227/427 (53%), Gaps = 59/427 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQ-------------------TTSSA 101
E K+ E +FVVVM+TK K V+ APA Q + A
Sbjct: 61 EYKIDEKNFVVVMVTKPKA-------VTPAPATTQQSSPATTTTVSSSTAPAVAQAPTPA 113
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVS----SSVS 157
P + P+ S TPAPT A + P SA P PA PA P A S SS S
Sbjct: 114 PALAPTPSPASITPAPTTASSEPAPASATQPEKPAEKPAETPVATSPTATDSTSGDSSRS 173
Query: 158 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 217
+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP- 229
Query: 218 QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT 277
G+ +Q P A + + P++ ++ G
Sbjct: 230 ----------------GDRESQAVVDTPPAVSTGAPPSSVAAAAATTTASTTTASPGGHP 273
Query: 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 337
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 274 LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEA 333
Query: 338 EGNVLGQLASAMPQA---------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 388
G G + + VTP+E+EAIERL+A+GF LV++ +FAC KNE
Sbjct: 334 GGQGGGGGGGSGGIGEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNEN 393
Query: 389 LAANYLL 395
LAAN+LL
Sbjct: 394 LAANFLL 400
>gi|354499742|ref|XP_003511965.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Cricetulus griseus]
Length = 497
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 156/415 (37%), Positives = 225/415 (54%), Gaps = 62/415 (14%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +
Sbjct: 101 QVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 160
Query: 82 S---GASTVSAAPANQAQTTSSA--------PPTSTQPTTT--SQTPAPTVAPPQSVPES 128
+ + S PA A ++S+A P ++ PT+T S TPA T + P S
Sbjct: 161 TPVPATTQQSNTPATTAVSSSTATVVAQAPTPTPASAPTSTPASTTPASTTVSSEPAPAS 220
Query: 129 APPPAAPAPAPAPAP---APAPAPA-PVSSSVSDVYGQAASNLVAGSNLEATVQQILDMG 184
A P PA PA +P +PAPA + P SS S+++ A S LV G + E V +I+ MG
Sbjct: 221 AAQPEKPAEKPAQSPVVTSPAPADSTPGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG 280
Query: 185 GGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGNPPAQT 240
++RE VI ALRA++NNP+RAVEYL GIP Q V P PP
Sbjct: 281 ---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP------------PPQAV 325
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
P +PA + S+AG L+FLRN QFQ +R ++Q NP +
Sbjct: 326 STGTPQSPAVAAAAATTTA--------TTTSSAGGHPLEFLRNQPQFQQMRQIIQQNPSL 377
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------------------EGNVL 342
L +LQ++G++NP L++ I +HQ F++++NEPV+ G +
Sbjct: 378 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGSGGGGI 437
Query: 343 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
+ S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 438 AEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 492
>gi|387914414|gb|AFK10816.1| UV excision repair protein RAD23-like protein [Callorhinchus milii]
Length = 378
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 157/416 (37%), Positives = 233/416 (56%), Gaps = 51/416 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ VKTL+ F I+++PE V +K+ IET +G D +P + Q LI+ GK+L D T +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS---GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
E K+ E FVVVM+TK K S S A+ + Q TT+ P ++ PT T++T
Sbjct: 61 EYKIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPATTTPTVPPASSPTATTET--- 117
Query: 118 TVAPPQSVPE--SAPPPAAPAPAPAPAPAPAPAPAPVSSS----VSDVYGQAASNLVAGS 171
P + E +A P + + + + +P+ + + +S S ++ A S LV G
Sbjct: 118 --VPTNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDVATSALVTGQ 175
Query: 172 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG 231
E V +I MG + RE V+ AL+A++NNP+RAVEYL GIP + AR+S
Sbjct: 176 QYETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGER-----ARSSVNN 227
Query: 232 -QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 290
Q A T + QPAAPAPTS N L+FLRN QF +
Sbjct: 228 PQQTTGTACTGSAQPAAPAPTSRENP---------------------LEFLRNQPQFHQM 266
Query: 291 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP 350
R ++Q NP +L +L +LG++NPHL++ I +HQ +F++++NEP++ V + SA
Sbjct: 267 RQILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPIQDIANEVA--VTSAGE 324
Query: 351 QA---VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
Q + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 325 QQMDHLQVTPQEKEAIERLKALGFPEGLVVQAYFACEKNENLAANFLLQ--QNFDD 378
>gi|126335852|ref|XP_001374067.1| PREDICTED: UV excision repair protein RAD23 homolog B [Monodelphis
domestica]
Length = 411
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 155/426 (36%), Positives = 236/426 (55%), Gaps = 53/426 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +++ A + + + TTS+ ++ + TP+P +A
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAATSAPSPATTQQSIPATTSTVSSSTAASVAQAPTPSPALA 120
Query: 121 PP---------------QSVPESAPPPAAPAPAPAPAP---APAPAPAPV-SSSVSDVYG 161
P + +P SAP PA P AP +P + + + SS S+++
Sbjct: 121 PTPTPTSVTPTPAAAVCEPIPTSAPKEEKPAEKPVEAPIGVSPTSSDSTLGDSSRSNLFE 180
Query: 162 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----E 217
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 181 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDREN 237
Query: 218 QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT 277
Q+ V P AS G + A A A T+ +P
Sbjct: 238 QSVVDPPQAASTGAAQSSAVAAAAATTTATTTTTTTSGGHP------------------- 278
Query: 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV--- 334
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 279 LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQES 338
Query: 335 -----EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389
GG + + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 339 GGQGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 398
Query: 390 AANYLL 395
AAN+LL
Sbjct: 399 AANFLL 404
>gi|224091533|ref|XP_002188381.1| PREDICTED: UV excision repair protein RAD23 homolog B [Taeniopygia
guttata]
Length = 400
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 150/421 (35%), Positives = 218/421 (51%), Gaps = 54/421 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFRIDIDPEETVKALKEKIESERGKDAFPVAGQKLIYAGKILNDETALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K A+ P+N T S T PAP A
Sbjct: 61 EYKIDEKNFVVVMVTKPK-----AAAGVTQPSNATSTVGSTTAAPTAVAAPIPVPAPVPA 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAP----------APAPVSSSVSD-----VYGQAAS 165
P P PAP P +P+ + S+ D ++ A S
Sbjct: 116 PVPPPPAPDAVACEPAPVSTPKEEKPEEKPPEAPAAVSPSSIDSTTGDTSRSNLFEDAIS 175
Query: 166 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 225
LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 176 ALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP--------- 223
Query: 226 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 285
QA P Q P T ++ + +P S+ G L+FLRN
Sbjct: 224 ---GDNQAVADPPQ--------PPSTGASQSSAVAAAVATIPTTTSSLGGHPLEFLRNQP 272
Query: 286 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV----------- 334
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F+ ++NEPV
Sbjct: 273 QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIHMLNEPVLESRQGLSGSD 332
Query: 335 EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 394
+G +G +A + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+L
Sbjct: 333 DGASTGGIGDAGNAHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFL 392
Query: 395 L 395
L
Sbjct: 393 L 393
>gi|397479272|ref|XP_003810949.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Pan paniscus]
Length = 403
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 162/428 (37%), Positives = 227/428 (53%), Gaps = 61/428 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K + G+ EVK +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MSLKKKKVSGSVCRREVKA------LKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 54
Query: 61 ENKVAENSFVVVMLTKSKVSSSGA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A +T +APA+ TSS T Q T APT
Sbjct: 55 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 114
Query: 119 VAPPQSVPESAPPPAAPAPAPAPA---PAPAPAPAPVS------------SSVSDVYGQA 163
P P SA + PAPA A PA PA PV+ SS S+++ A
Sbjct: 115 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 174
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 220
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 175 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 231
Query: 221 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 278
V PP A ++ Q+ A +SG G P L
Sbjct: 232 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 270
Query: 279 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 337
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 271 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 330
Query: 338 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 331 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 390
Query: 390 AANYLLDH 397
AAN+LL
Sbjct: 391 AANFLLQQ 398
>gi|148226348|ref|NP_001082494.1| RAD23 homolog B [Xenopus laevis]
gi|28277263|gb|AAH44089.1| MGC53561 protein [Xenopus laevis]
gi|28278600|gb|AAH44115.1| MGC53561 protein [Xenopus laevis]
Length = 412
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 150/444 (33%), Positives = 223/444 (50%), Gaps = 74/444 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G+D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIELEKGNDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSK--------------------------------VSSSGASTVS 88
E K+ E +FVVVM+TK K ++ A
Sbjct: 61 EYKIDEKNFVVVMVTKPKGAACPSAPSPAVSQPVSAAAPAPASPPLTYTPIARQNAPIPL 120
Query: 89 AAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPA 148
P ++ A PTS TTT AP + PE +P +P+
Sbjct: 121 PVPLPLPTVSAPAAPTSELSTTT--------APKEEKPEE----KTVSPPETESPSSTEC 168
Query: 149 PAPVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAV 208
P SS ++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAV
Sbjct: 169 SLPTDSSRPSLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAV 225
Query: 209 EYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN 268
EYL GIP + + GQA P + + P P P + A
Sbjct: 226 EYLLMGIP----------SDSEGQAVAEPPEALSSTPTEPLPVAAGAAA------TTTVP 269
Query: 269 MGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 328
+ G LDFL+N QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++
Sbjct: 270 STPSTGGNPLDFLQNQPQFQQMRQIIQQNPSLLPALLQQIGRENPSLLQQISQHQEQFIQ 329
Query: 329 LINEPV---------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEV 379
++N+PV GG V + S + VTP+E+EAIERL+A+GF LV++
Sbjct: 330 MLNDPVPESGGQGGGGGGGRGVAAEAGSGQMNYIQVTPQEKEAIERLKALGFPEGLVIQA 389
Query: 380 FFACNKNEELAANYLLDHMHEFED 403
+FAC KNE LAAN+LL F+D
Sbjct: 390 YFACEKNENLAANFLLQ--QNFDD 411
>gi|427787569|gb|JAA59236.1| Putative nucleotide excision repair factor nef2 rad23 component
[Rhipicephalus pulchellus]
Length = 397
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 160/417 (38%), Positives = 225/417 (53%), Gaps = 38/417 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+IEV P + V K+ IE +G D YPA Q LI+ GK+L D + +
Sbjct: 1 MIVTLKTLQQQTFKIEVDPSETVKVFKERIEEKKGKD-YPAHCQKLIYAGKILSDDSKMS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPT---STQPTTTSQTPAP 117
E ++ E FVV+M+TK K S A+ V+ P + S+ P+ TQP +Q PA
Sbjct: 60 EYEIDEKKFVVIMVTKPK-QSVDATAVTPGPGATSTVASAGTPSPAAGTQPAAEAQKPAE 118
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATV 177
T P +S PA +PA + A P P ++ + + AAS LV G E V
Sbjct: 119 T---PSGTSKS------PAQSPAHSAATTPTSRPAAAETAGL-AMAASALVMGDEYERMV 168
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP- 236
QQI++MG ++R V RALRA++NNP+RAVEYL +GIP P A S G +
Sbjct: 169 QQIMEMG---YERPQVERALRASFNNPDRAVEYLLTGIPPSQQDP--AEESHGATEESEE 223
Query: 237 -----PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 291
P+ T P + T+G PL+ L G N L FLR QFQ +R
Sbjct: 224 APRSVPSDTAMSSPQSQHGTTGGGGGPLEA---ALAAEGGNP-EDPLAFLRFQPQFQQMR 279
Query: 292 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV--EGGEGNVLGQLASAM 349
++Q NPQ+L +LQ+LG+ NP L++LI +Q F+R++NEP GG
Sbjct: 280 QVIQQNPQLLNAVLQQLGQTNPQLLQLISRNQEAFVRMLNEPSPPPGGASQGGAPGGLGS 339
Query: 350 PQAVT------VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
A VTP+++EAIERL+A+GF LV++ +FAC+KNE LAAN+LL ++
Sbjct: 340 GGAPIEVNYGQVTPQDKEAIERLKALGFPEYLVVQAYFACDKNENLAANFLLSQNYD 396
>gi|347800662|ref|NP_001231642.1| UV excision repair protein RAD23 homolog B isoform 2 [Homo sapiens]
gi|397479270|ref|XP_003810948.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pan paniscus]
gi|426362615|ref|XP_004048453.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Gorilla gorilla gorilla]
gi|221042046|dbj|BAH12700.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 157/404 (38%), Positives = 219/404 (54%), Gaps = 55/404 (13%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 GA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A +T +APA+ TSS T Q T APT P P SA + PAPA A
Sbjct: 62 PAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 121
Query: 141 PA---PAPAPAPAPVS------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 185
PA PA PV+ SS S+++ A S LV G + E V +I+ MG
Sbjct: 122 AKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 186 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 240
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 238
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+SG G P L+FLRN QFQ +R ++Q NP +
Sbjct: 239 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 277
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQ 351
L +LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 278 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN 337
Query: 352 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 338 YIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 381
>gi|347658978|ref|NP_001231638.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
gi|343961243|dbj|BAK62211.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
Length = 388
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 155/404 (38%), Positives = 217/404 (53%), Gaps = 55/404 (13%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 GA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A +T +APA+ T S T Q APT P P SA + PAPA A
Sbjct: 62 PAPATTQQSAPASTTAVTCSTTTTVAQAPIPVPALAPTSTPASITPASATASSEPAPASA 121
Query: 141 PA---PAPAPAPAPVS------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 185
PA PA PV+ SS S+++ A S LV G + E V +I+ MG
Sbjct: 122 AKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 186 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 240
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 238
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+SG G P L+FLRN QFQ +R ++Q NP +
Sbjct: 239 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 277
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQ 351
L +LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 278 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN 337
Query: 352 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 338 YIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 381
>gi|194033860|ref|XP_001927901.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sus scrofa]
Length = 408
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 157/425 (36%), Positives = 227/425 (53%), Gaps = 54/425 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVS-------------AAPANQAQTTSSAPPTSTQ 107
E K+ E +FVVVM+TK K ++ A + + AQ + AP +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNSATTTTVSSSTAPAAAQAPTPAPALAPT 120
Query: 108 PTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSV----SDVYGQA 163
PT S TPA T A + P SA PA PA P + S+S S+++ A
Sbjct: 121 PTPASITPASTTASSEPAPASATKQEKPAEKPAETPVATSPTSTDSTSGDSSRSNLFEDA 180
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQT 219
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 220 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 279
V P AS G + A +SG G P L+
Sbjct: 238 VVDPPPAASTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----------LE 276
Query: 280 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV----- 334
FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 277 FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGS 336
Query: 335 ----EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 390
GG + + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LA
Sbjct: 337 QGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLA 396
Query: 391 ANYLL 395
AN+LL
Sbjct: 397 ANFLL 401
>gi|281345182|gb|EFB20766.1| hypothetical protein PANDA_004561 [Ailuropoda melanoleuca]
Length = 386
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 148/399 (37%), Positives = 213/399 (53%), Gaps = 46/399 (11%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K ++
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 60
Query: 83 GA--STVSAAPANQAQTTSSAPPTSTQPTTT-----------SQTPAPTVAPPQSVPESA 129
A +T + PA +SS P Q S TPAPT A + P SA
Sbjct: 61 PAPATTQQSNPATTTTVSSSTAPAVAQAPAPAPTLAPTPSPASVTPAPTTASSEPAPASA 120
Query: 130 PPPAAPAPAPAPAPAPAPAPAPVS----SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 185
P PA PA P A S SS S+++ A S LV G + E V +I+ MG
Sbjct: 121 TQPEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 179
Query: 186 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQP 245
++RE VI ALRA++NNP+RAVEYL GIP G+ +Q P
Sbjct: 180 --YEREQVIAALRASFNNPDRAVEYLLMGIP-----------------GDRDSQAVVDTP 220
Query: 246 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPML 305
A + + P++ +N G L+FLRN QFQ +R ++Q NP +L +L
Sbjct: 221 PAVSTGAPPSSVAAAAATTTASTTTANPGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALL 280
Query: 306 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVT 356
Q++G++NP L++ I +HQ F++++NEPV+ + + S + VT
Sbjct: 281 QQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVT 340
Query: 357 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
P+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 341 PQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 379
>gi|355753132|gb|EHH57178.1| UV excision repair protein RAD23-like protein B, partial [Macaca
fascicularis]
Length = 387
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 157/404 (38%), Positives = 219/404 (54%), Gaps = 55/404 (13%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 60
Query: 83 GA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A +T +APA+ TSS T Q T APT P P SA + PAPA A
Sbjct: 61 PAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 120
Query: 141 ---PAPAPAPAPAPVS------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 185
PA PA PV+ SS S+++ A S LV G + E V +I+ MG
Sbjct: 121 TKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 179
Query: 186 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 240
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 180 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 237
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+SG G P L+FLRN QFQ +R ++Q NP +
Sbjct: 238 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 276
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQ 351
L +LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 277 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN 336
Query: 352 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 337 YIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 380
>gi|410901673|ref|XP_003964320.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Takifugu rubripes]
Length = 367
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 148/397 (37%), Positives = 216/397 (54%), Gaps = 35/397 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSCQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+ E +FVVVM++K+K S++ S P Q + S + T + P+ A
Sbjct: 61 DYKIDEKNFVVVMVSKAKPSTAATPPASEPPKPPLQDSGSTSTAAPAATVPATASTPSSA 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P + + P P+ A PA SSS A+S LV G+ EA + +I
Sbjct: 121 PTATPAAAPVPSEEAKEEPSAAITEPQQPA--SSSDGSQGLDASSALVTGAEYEAMLTEI 178
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+ MG ++RE V+ ALRA++NNP RAVEYL +GIP S+ Q NPP Q
Sbjct: 179 ISMG---YERERVVAALRASFNNPHRAVEYLLTGIP-----------SSPVQESNPPVQA 224
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
AP PT P + P G L FLRN QF +R +Q NP +
Sbjct: 225 -----PAPLPTESPASPP--------------EGENPLAFLRNQPQFLHMRQAIQQNPNL 265
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 360
L +LQ+LG++NP L++ I +HQ F++++NEPV G + + VTP+E+
Sbjct: 266 LSALLQQLGQENPQLLQQINQHQERFIQMLNEPVGEGGEMGAAGDEGSSVNYIQVTPQEK 325
Query: 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
EAIERL+A+GF ALV++ +FAC KNE LAAN+LL+
Sbjct: 326 EAIERLKALGFPEALVIQAYFACEKNENLAANFLLNQ 362
>gi|388499670|gb|AFK37901.1| unknown [Medicago truncatula]
Length = 215
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 132/232 (56%), Positives = 149/232 (64%), Gaps = 28/232 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI+V D V DVKKNIE QG+ VYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKINVKTLKGTHFEIQVNLHDTVGDVKKNIEGAQGAAVYPAAQQMLIHQGKVLKDETTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+VAENSF+V+ML+K+KVSSSGAS SAAP +S PP ST
Sbjct: 61 ENQVAENSFIVIMLSKNKVSSSGASAASAAPPAVQPASSLPPPLST-------------- 106
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P P + PA SNL+AGS LE T+QQI
Sbjct: 107 --------------PQPLASTVGQGESNPAQGPVVTPPTTVVPESNLIAGSTLEPTIQQI 152
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ 232
L+MGGGSWDR+TVIRALRAAYNNPERAVEYLYSGIPEQ P VA ++ GQ
Sbjct: 153 LEMGGGSWDRDTVIRALRAAYNNPERAVEYLYSGIPEQAEAPAVAASTNVGQ 204
>gi|431918433|gb|ELK17657.1| UV excision repair protein RAD23 like protein B [Pteropus alecto]
Length = 439
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 159/459 (34%), Positives = 228/459 (49%), Gaps = 87/459 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDK-------------------------------VSDVKKN 29
M+V +KTL+ F+I++ PE+ V +K+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETHVQQKFSTLSEAPTLCPAPLFGLGTPTNSIIVKALKEK 60
Query: 30 IETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVS- 88
IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K ++ A +
Sbjct: 61 IESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTTPAPATTQ 120
Query: 89 -------------AAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAP 135
APA AQT + P + PT S TPA T A + P SA P
Sbjct: 121 QSNSATTTTVSSSTAPAV-AQTPTPTPALAPTPTPASITPASTTASSEPAPASATKQENP 179
Query: 136 APAPAPAPAPAPAPAPVSSSV----SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRE 191
A PA P + S+S S+++ A S LV G + E V +I+ MG ++RE
Sbjct: 180 AEKPAETPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---YERE 236
Query: 192 TVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAA 247
VI ALRA++NNP+RAVEYL GIP Q V P AS G + A
Sbjct: 237 QVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPAASTGAPQSSVAAAAATTTATT 296
Query: 248 PAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQE 307
+SG G P L+FLRN QFQ +R ++Q NP +L +LQ+
Sbjct: 297 TTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSLLPALLQQ 335
Query: 308 LGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVTPE 358
+G++NP L++ I +HQ F++++NEPV+ + + S + VTP+
Sbjct: 336 IGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQ 395
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 396 EKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 434
>gi|351710326|gb|EHB13245.1| UV excision repair protein RAD23-like protein B [Heterocephalus
glaber]
Length = 406
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 158/431 (36%), Positives = 232/431 (53%), Gaps = 68/431 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I+V D V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQIFKIDV---DLVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQ------- 113
E K+ E +FVVVM+TK K + + APA Q++ ++ T + + T+
Sbjct: 58 EYKIDEKNFVVVMVTKPK------AVTTPAPATTQQSSPASTTTVSSSSATAVAQAPTPA 111
Query: 114 -----TPAP-TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVS----------SSVS 157
T AP ++AP + S P PA+ A P+ PA P S SS S
Sbjct: 112 PALAPTSAPASIAPAVTTVSSEPAPASAAQQEKPSEKPAETPVASSPASTDNTSGDSSRS 171
Query: 158 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP- 216
+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 172 NLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPG 228
Query: 217 ---EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 273
Q V P AS G AP S +A +++
Sbjct: 229 DRESQAVVDPPQAASTG------------------APQS--SAVAAAAATTTAATTTTSS 268
Query: 274 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 333
G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEP
Sbjct: 269 GGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEP 328
Query: 334 V---------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACN 384
V GG + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 329 VQEAGSQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACE 388
Query: 385 KNEELAANYLL 395
KNE LAAN+LL
Sbjct: 389 KNENLAANFLL 399
>gi|332222431|ref|XP_003260373.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Nomascus leucogenys]
Length = 388
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 156/404 (38%), Positives = 218/404 (53%), Gaps = 55/404 (13%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 GA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A +T +APA+ TSS T Q T APT P P S + PAPA A
Sbjct: 62 PAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPTSTPASITPASVTASSEPAPASA 121
Query: 141 ---PAPAPAPAPAPVS------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 185
PA PA PV+ SS S+++ A S LV G + E V +I+ MG
Sbjct: 122 TKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 186 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 240
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 238
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+SG G P L+FLRN QFQ +R ++Q NP +
Sbjct: 239 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 277
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQ 351
L +LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 278 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN 337
Query: 352 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 338 YIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 381
>gi|428161911|gb|EKX31145.1| Rad23 nucleotide excision repair protein binds to XPC [Guillardia
theta CCMP2712]
Length = 378
Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 154/429 (35%), Positives = 224/429 (52%), Gaps = 92/429 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKT+ G E+E +P + ++D+K IE S P ++ +IH G+VL+D +
Sbjct: 1 MKVIVKTMAGLQTEMEFEPTNTLADLKTKIEGQMSSLGGPVNK--IIHMGRVLEDGKPIS 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E VA+ + V+M++K K PA + Q SS P S P ++ A
Sbjct: 59 EYGVADGNTFVIMVSKKK------------PAQEPQP-SSEPAPSAAPKPSTPATEAPPA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P P PP+ PA + AP+ APA +S Y +AS L+ G +LEATV QI
Sbjct: 106 APAVQPSQPAPPSTPAQS-----APSTAPASTTS-----YDASASALLTGESLEATVMQI 155
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE----------------------- 217
++MG ++RE V++ALRAA+NNP+RAVEYL +GIPE
Sbjct: 156 MEMG---FEREQVMKALRAAFNNPDRAVEYLMTGIPEGADTAAPPQGGGQGGGQGAGGSG 212
Query: 218 ---QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 274
++ P +S Q+Q QQ + T GP
Sbjct: 213 SGGGVSIDPEVLSSL---------QSQMQQHSESGGTGGP-------------------- 243
Query: 275 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 334
LDFLR+ QF LR ++QA PQ LQP+L+++G+Q+P ++R IQE+Q +F+RLINEPV
Sbjct: 244 ---LDFLRSDPQFAMLRGIIQARPQFLQPLLEQIGQQHPEVLRAIQENQDEFVRLINEPV 300
Query: 335 EGGEGNVLGQLASAMPQ------AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 388
+ + + Q + + +T EE EA+ RLEA+GF+R L LE + AC+KNEE
Sbjct: 301 DQTQFSQAMQALEGRGEDEEGAVQIQLTQEEGEALARLEALGFNRQLALEAYLACDKNEE 360
Query: 389 LAANYLLDH 397
+AANYL ++
Sbjct: 361 MAANYLFEN 369
>gi|221045766|dbj|BAH14560.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 156/404 (38%), Positives = 218/404 (53%), Gaps = 55/404 (13%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 GA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A +T +APA+ TSS T Q T APT P P SA + PAPA A
Sbjct: 62 PAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 121
Query: 141 PA---PAPAPAPAPVS------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 185
PA PA PV+ SS S+++ A S LV G + E V +I+ MG
Sbjct: 122 AKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 186 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 240
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 238
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+SG G P L+FLRN QFQ +R ++Q NP +
Sbjct: 239 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 277
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQ 351
L +LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 278 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN 337
Query: 352 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ VTP+E+EAIERL+A+GF LV++ +FAC K E LAAN+LL
Sbjct: 338 YIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKRENLAANFLL 381
>gi|148225642|ref|NP_001089431.1| uncharacterized protein LOC734481 [Xenopus laevis]
gi|63101219|gb|AAH94481.1| MGC115064 protein [Xenopus laevis]
Length = 419
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 150/434 (34%), Positives = 227/434 (52%), Gaps = 47/434 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDIALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +S ++ A + + + T ++ AP
Sbjct: 61 EYKIDEKNFVVVMVTKPKGASCSSAPSPATSQPASAASPAPASPPLTYTPIARQNAPIPL 120
Query: 121 P-PQSVPESAPPPAAPAPAPAP--------------------APAPAPAPAPVSSSVSDV 159
P P S+P + P PAAP P+ +P+ P SS +
Sbjct: 121 PVPFSLP-TVPTPAAPTSEPSTTTAPEEEKPEEKTVSPPETVSPSSTECSLPTDSSRPSI 179
Query: 160 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 219
+ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 180 FEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP--- 233
Query: 220 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT-- 277
+ QA P + + P P + P PL + + T
Sbjct: 234 -------SDREDQAVAEPPEALSSTPTLTPPLTQPLTQPLPAAAGAAATTTTPSTPSTGG 286
Query: 278 --LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV- 334
LDFL+N QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++N+PV
Sbjct: 287 NPLDFLQNQPQFQQMRQIIQQNPSLLPALLQQIGRENPSLLQQISQHQEQFIQMLNDPVP 346
Query: 335 -----EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389
GG V + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 347 EGGREGGGGRGVAAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL 406
Query: 390 AANYLLDHMHEFED 403
AAN+LL F+D
Sbjct: 407 AANFLLQ--QNFDD 418
>gi|345777678|ref|XP_003431632.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Canis lupus familiaris]
Length = 385
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 145/401 (36%), Positives = 214/401 (53%), Gaps = 52/401 (12%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK---- 57
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
+T + A Q+ ++ +S+ T Q PAP V P P S P A + PAP
Sbjct: 58 AVTTPAPATTQQSNPATTTTVSSSTAPTVVQAPAPPVLAPTPSPASVTPAPATSSEPAPT 117
Query: 143 -------PAPAPAPAPVS------------SSVSDVYGQAASNLVAGSNLEATVQQILDM 183
PA PA PV+ SS S+++ A S LV G + E V +I+ M
Sbjct: 118 SVTQQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSM 177
Query: 184 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQ 243
G ++RE VI ALRA++NNP+RAVEYL GIP G+ +Q
Sbjct: 178 G---YEREQVIAALRASFNNPDRAVEYLLMGIP-----------------GDRESQAVVD 217
Query: 244 QPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQP 303
P A + + P++ ++ G L+FLRN QFQ +R ++Q NP +L
Sbjct: 218 TPPAVSTGAPPSSVAAAAATTTASTTTASPGGHPLEFLRNQPQFQQMRQIIQQNPSLLPA 277
Query: 304 MLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVT 354
+LQ++G++NP L++ I +HQ F++++NEPV+ + + S +
Sbjct: 278 LLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQ 337
Query: 355 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 338 VTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 378
>gi|410903534|ref|XP_003965248.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Takifugu rubripes]
Length = 384
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 149/418 (35%), Positives = 220/418 (52%), Gaps = 50/418 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE+ E+ V +K+ IE +G D +P S LI+ G +L DV L+
Sbjct: 1 MLITLKTLQQQTFKIEIDEEETVKTLKERIEAEKGKDNFPVSGLKLIYAGVILNDVKPLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E +++ +FVVVM TK K + + AA + ++APP +T S+ P
Sbjct: 61 EYNISDKNFVVVMATKPKTAPAATQPSPAA----SGPCTAAPPAPGACSTVSEVPTQQTT 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ E P AAPA P + P A ++ +A SNLV G + E+ V +I
Sbjct: 117 KEDNAEEKPPSTAAPASTPEGGGSEVPTNA-------NLIDEAVSNLVTGPSYESMVNEI 169
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+ MG +DRE V+ ALRA++NNP+RAVEYL +GIP + GQA A+
Sbjct: 170 MLMG---YDREQVVVALRASFNNPDRAVEYLLTGIPGRDQ----------GQAAGTTAEA 216
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA---GTLDFLRNSQQFQALRTMVQAN 297
+ A AP G A P G GS+ GA L FLRN QFQ +R ++Q N
Sbjct: 217 TSAGVAPAAPLGGLRA------PTG---TGSSTGAERVNPLSFLRNQPQFQQMRQLIQQN 267
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-----------VEGGEGNVLGQLA 346
+L +LQE+G++NP L++ I HQ F++++NEP + G +
Sbjct: 268 ASLLPALLQEIGRENPELLQEISRHQEQFIQMLNEPNPEPVPGGGGGAAATAAGMAGTAS 327
Query: 347 SAMP-QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
P + + VT +E+E+IERL+ +GF LV++ FFAC KNE +AAN+LL F+D
Sbjct: 328 GENPMRYIHVTAQEKESIERLKELGFPEGLVIQAFFACEKNENMAANFLLQ--QNFDD 383
>gi|355567554|gb|EHH23895.1| UV excision repair protein RAD23-like protein B, partial [Macaca
mulatta]
Length = 387
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 156/406 (38%), Positives = 218/406 (53%), Gaps = 55/406 (13%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 60
Query: 83 GA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A +T +APA+ TSS T Q T APT P P SA + PAPA A
Sbjct: 61 PAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 120
Query: 141 ---PAPAPAPAPAPVS------------SSVSDVYGQAASNLVAGSNLEATVQQILDMGG 185
A PA PV+ SS S+++ A S LV G + E V +I+ MG
Sbjct: 121 TKQKKAAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 179
Query: 186 GSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPAQT 240
++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 180 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAA 237
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+SG G P L+FLRN QFQ +R ++Q NP +
Sbjct: 238 ATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNPSL 276
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQ 351
L +LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 277 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGPMN 336
Query: 352 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 337 YIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 382
>gi|71896193|ref|NP_001025578.1| RAD23 homolog B [Xenopus (Silurana) tropicalis]
gi|60551813|gb|AAH91020.1| rad23b protein [Xenopus (Silurana) tropicalis]
Length = 416
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 153/440 (34%), Positives = 227/440 (51%), Gaps = 62/440 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDGEETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSK--VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP- 117
E K+ E +FVVVM+TK K SS + ++ PA+ A ++PP + P P P
Sbjct: 61 EYKIDEKNFVVVMVTKPKGAACSSTPTPAASQPASAAAPAPASPPLTYTPIARQNAPIPL 120
Query: 118 ---------------------TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSV 156
T AP + PE +P +P+ P SS
Sbjct: 121 PVPFSIPAVPAPAAPTSEPSTTTAPKEEKPEE----KTDSPQETVSPSSTECSLPTDSSR 176
Query: 157 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 216
++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 177 PSLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 233
Query: 217 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 276
+ GQA P QT + P P P + A + G
Sbjct: 234 ----------SDREGQAVAEPPQTLSSTPTQPLPAAAGAAA------TTTTPSTPSTGGN 277
Query: 277 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV-- 334
LDFL+N QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++N+PV
Sbjct: 278 PLDFLQNQPQFQQMRQIIQQNPSLLPALLQQIGRENPSLLQQISQHQEQFIQMLNDPVPE 337
Query: 335 -----------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 383
GG + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 338 SGGQGGGGGGGGGGGRGIAAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 397
Query: 384 NKNEELAANYLLDHMHEFED 403
KNE LAAN+LL F+D
Sbjct: 398 EKNENLAANFLLQ--QNFDD 415
>gi|164665688|gb|ABY66298.1| RAD23-like protein [Brassica napus]
Length = 357
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 158/437 (36%), Positives = 212/437 (48%), Gaps = 121/437 (27%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVK LKG FEI+V PED V DVKKNIETV G YPA++Q+LIH+GKVLKD TTL
Sbjct: 1 MKIFVKNLKGARFEIQVSPEDSVGDVKKNIETVMGVTAYPAAEQVLIHKGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N V+E S V+ + K K +S+G ST APA+ +A P ST
Sbjct: 61 ANNVSEKS--VIGVIKKKPASTGTST---APASLTALVHAAHPYST-------------- 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
AA P PA AASN S E+ +QQI
Sbjct: 102 ------------AAETPVTPTEPA----------------WDAASNGNYESISESNIQQI 133
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
L+M G+W RE V AL AY++ +A+EY+Y GIP ++ + +
Sbjct: 134 LEMVRGAWSREAVAYALCLAYDDLNKALEYIYFGIPVKS-------------EDHYTTEE 180
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
Q Q+PA DL +LD LR++ +F+ LR +VQ++P +
Sbjct: 181 QTQEPAEA-----------DL-------------EWSLDSLRHTPEFEHLRPLVQSDPSL 216
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLI----NEPVEGGE-GNVLG------------ 343
L L L KQNP RLIQ+++ DFLRL+ EP GG+ GN +G
Sbjct: 217 LMDFLLMLKKQNPPFFRLIQDNKADFLRLLLEQPQEPNNGGDSGNQVGDSEETQVAQLPK 276
Query: 344 -------------------QLASAMPQAVTV-TPEEREAIERLEAMGFDRALVLEVFFAC 383
Q+ + V V TPE+ E I+RLEA+GF+R +FAC
Sbjct: 277 ELQADQTNEPNNGGGDGGNQVGESKEAKVEVATPEDYELIKRLEALGFERGDAAVAYFAC 336
Query: 384 NKNEELAANYLLDHMHE 400
N+N ++AAN+LL + HE
Sbjct: 337 NRNLQVAANHLLGYKHE 353
>gi|387017982|gb|AFJ51109.1| UV excision repair protein RAD23 homolog B-like [Crotalus
adamanteus]
Length = 409
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 152/420 (36%), Positives = 224/420 (53%), Gaps = 43/420 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ + V +K+ IE +G D +P + Q LI+ GK+L D T L
Sbjct: 1 MQITLKTLQQQTFKIDIDCGETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDTALN 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-- 118
E K+ E +FVVVM+TK K +++ + T + + T +S P + + PA
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAAAPSPTTAQQSNDTTTTVTSTTPAAVPKLVPTPVPAQVSV 120
Query: 119 ----------VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDV-----YGQA 163
A +S P SA PA P P PA +P SS+ D+ + A
Sbjct: 121 SAPTASTPAAAAACESAPVSATVEEKPADKPVETP-PATSPTSTESSIGDISRSNLFEDA 179
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 223
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 180 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGD----- 231
Query: 224 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 283
R S G +PP Q + A S A S+ G L+FLRN
Sbjct: 232 --RESQG--MADPP-----QAASTAASPSSAVAAAAAATTTTTTTTTSSTGGHPLEFLRN 282
Query: 284 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE-------- 335
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 283 QPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQESGQGSGG 342
Query: 336 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
G G + + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 343 SGSGGGVVEAGSRHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 402
>gi|212274727|ref|NP_001130219.1| uncharacterized protein LOC100191313 [Zea mays]
gi|194688580|gb|ACF78374.1| unknown [Zea mays]
gi|414885363|tpg|DAA61377.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
gi|414885364|tpg|DAA61378.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 225
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 129/213 (60%), Positives = 150/213 (70%), Gaps = 17/213 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VKTLKG+ F IEV P DKV+DVKK IE++Q YPA QQ+LIHQGKVLKD TTLE
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN+V EN+F+V+ML ++K SSS AAPA T + AP T T P T QT A A
Sbjct: 61 ENQVVENNFLVIMLRQNKGSSS------AAPAKV--TANQAPSTQTVPATPPQTSA---A 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P AP P P APA + APA S+ +D YGQA SNLVAGSNLE T++ I
Sbjct: 110 P------DAPAPIVPVSAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSI 163
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 213
L+MGGG+WDR+TV+RALRAAYNNPERAVEYLYS
Sbjct: 164 LEMGGGTWDRDTVLRALRAAYNNPERAVEYLYS 196
>gi|440908044|gb|ELR58113.1| UV excision repair protein RAD23-like protein B, partial [Bos
grunniens mutus]
Length = 386
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 152/409 (37%), Positives = 212/409 (51%), Gaps = 66/409 (16%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct: 1 VRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK---- 56
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPT-------------------TTSQTPAPTVAPPQ 123
+ + APA Q+ S+A T + T S TPAPT A +
Sbjct: 57 --AVTTPAPATTQQSNSAATTTVSSSTAPAVTQAPAPAPASAPTPTPVSVTPAPTTASSE 114
Query: 124 SVPESAPPPAAPAPAPAPAP-APAPAPAPVSSSV---SDVYGQAASNLVAGSNLEATVQQ 179
P SA PA P P A PA +S S+++ A S LV G + E V +
Sbjct: 115 PAPASAAKQEKPAEGPVETPVATTPASTDSTSGDSSRSNLFEDATSALVTGQSYENMVTE 174
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGN 235
I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P AS G +
Sbjct: 175 IMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPAASTGAPQSS 231
Query: 236 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 295
A +SG G P L+FLRN QFQ +R ++Q
Sbjct: 232 VAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQ 270
Query: 296 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA--- 352
NP +L +LQ++G++NP L++ I +HQ F++++NEPV+ G G + A
Sbjct: 271 QNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAG 330
Query: 353 ------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 331 GGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 379
>gi|348518002|ref|XP_003446521.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Oreochromis niloticus]
Length = 365
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 156/403 (38%), Positives = 231/403 (57%), Gaps = 49/403 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+ E +FVVVM++K+K +++ + +VS AP Q + S T+T+
Sbjct: 61 DYKIDEKNFVVVMVSKAKPAAAASPSVSEAPKPPVQDSGS--------TSTAAPTTNPTP 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P P + P P+ A + A A P P SSS A+S LV G+ EA + +I
Sbjct: 113 APAPAPAAVPIPSGEAKEESSAVATEPQ-QPASSSGGSQGLDASSTLVTGAEYEAMLTEI 171
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+ MG ++RE V+ ALRA++NNP RAVEYL +GIP S+ Q NPPAQ
Sbjct: 172 MSMG---YERERVVAALRASFNNPHRAVEYLLTGIP-----------SSPVQESNPPAQ- 216
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
APTSG P +P G L FLR QF +R +Q NP +
Sbjct: 217 --------APTSGTTEAP------SVPE-----GENPLAFLRTQPQFLHMRQAIQQNPAL 257
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV-EGGEGNVLGQLASAMPQA-----VT 354
L +LQ+LG++NP L++ I +HQ F++++NEPV EGG+ +G++ +A + +
Sbjct: 258 LPALLQQLGRENPQLLQQISQHQELFIQMLNEPVGEGGDAPEVGEMGAAGEEGAPVNYIQ 317
Query: 355 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
VTP+E+EAIERL+A+GF ALV++ +FAC KNE LAAN+LL+
Sbjct: 318 VTPQEKEAIERLKALGFPEALVIQAYFACEKNENLAANFLLNQ 360
>gi|296190503|ref|XP_002743221.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Callithrix jacchus]
Length = 388
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 159/406 (39%), Positives = 222/406 (54%), Gaps = 59/406 (14%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 --GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A+T +APA+ TSS T Q T + APT P P SA A+P PAPA
Sbjct: 62 PAPATTQQSAPASTTAVTSSTVTTVAQAPTPAPALAPTSTPSSVTPASA--TASPEPAPA 119
Query: 141 PA-----PAPAPAPAPVSSSV------------SDVYGQAASNLVAGSNLEATVQQILDM 183
A PA PA PV+SS S+++ A S LV G + E V +I+ M
Sbjct: 120 SATKQEKPAEKPAETPVASSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSM 179
Query: 184 GGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGNPPA 238
G ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+ A
Sbjct: 180 G---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRENQAVVDPPQAASTGAPQSSAVAA 236
Query: 239 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 298
+SG G P L+FLRN QFQ +R ++Q NP
Sbjct: 237 AAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQQNP 275
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAM 349
+L +LQ++G++NP L++ I +HQ F++++NEPV+ + + S
Sbjct: 276 SLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGH 335
Query: 350 PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 336 MNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 381
>gi|41056115|ref|NP_956858.1| UV excision repair protein RAD23 homolog B [Danio rerio]
gi|33989500|gb|AAH56578.1| RAD23 homolog B (S. cerevisiae) [Danio rerio]
Length = 382
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 150/411 (36%), Positives = 230/411 (55%), Gaps = 38/411 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +S+ A S++ ++ + TT+SA + +
Sbjct: 61 EYKIDEKNFVVVMVTKPKSASAPAPPSSSSSSSSSSTTASASAAPSAAPVSESPSEEEKK 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSV---SDVYGQAASNLVAGSNLEATV 177
P + P S P APA PVSS ++++ +A S LV G + E V
Sbjct: 121 PSEEKPSSDP---------------APATTPVSSGSLPNANIFEEATSALVTGQSYENMV 165
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 237
+I+ MG ++R+ V+ ALRA++NNP+RAVEYL +GIP + V A +G+ P
Sbjct: 166 TEIMLMG---YERDRVVAALRASFNNPDRAVEYLLTGIPAEGEGSVVGAVDAVSPSGSTP 222
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQFQALRTMVQA 296
A A PA S P++ P S+A GA L+FLRN QF +R ++Q
Sbjct: 223 ASAPA--PAISTGLSSPSSTA--------PAQPSSASGANPLEFLRNQPQFLQMRQIIQQ 272
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA---- 352
NP +L +LQ++G++NP L++ I HQ F++++NEPV+ +
Sbjct: 273 NPSLLPALLQQIGRENPQLLQQISSHQEQFIQMLNEPVQEAGQGGGAGGVAEAGGGHMNY 332
Query: 353 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 333 IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQ--QNFDD 381
>gi|348522726|ref|XP_003448875.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 481
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 175/488 (35%), Positives = 244/488 (50%), Gaps = 94/488 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F IE+ PE V +K+ IE +G D +P+ Q LI+ GK+L D L+
Sbjct: 2 LTITLKTLQQQTFRIEIDPELTVKALKEKIEEHRGKDAFPSVGQKLIYAGKILNDDIPLK 61
Query: 61 ENKVAENSFVVVMLTKSK-----------------------------------VSSSGAS 85
E K+ E +FVVVM+TK K V S+
Sbjct: 62 EYKIDEKNFVVVMVTKPKPTSPAEAATHSVPTPAATPVPPPAAAPAPASGPKQVPSTPTH 121
Query: 86 TVSAA-PANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAP------- 137
T SAA PA+Q+ S APP+ + TT + A S ESAP + AP
Sbjct: 122 TTSAAVPASQSVPPSEAPPSVQENTTVASVGATAKPTLDSHSESAPASGSTAPVASSTAP 181
Query: 138 -----APAPAPAPAPAPA-------------------PVSSSVSDVYGQ------AASNL 167
APA P+ +P PA PV SS S + + AAS L
Sbjct: 182 EAVEEAPALVPSDSPTPAAQTEEELREDPENEPSDTAPVQSSASSLVDELGLLEEAASIL 241
Query: 168 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA 227
V G E V +I+ +G ++RE V+ ALRA+YNNP+RAVEYL GIP + + +
Sbjct: 242 VTGPEYENLVSEIMSIG---YEREQVVAALRASYNNPDRAVEYLLMGIPARASDLHNPQP 298
Query: 228 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS---NAGAGT------L 278
S NP + + P P N +++F QG P GS AG G+ L
Sbjct: 299 SRHSTPANPSTPSTEEPPQQPPAPPSSVINDVEVF-QG-PVSGSQPVTAGGGSGSIGNPL 356
Query: 279 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 338
+FLRN QFQ +R ++Q NP +L +LQ+LG+ NP L++ I EHQ F++++NEP G
Sbjct: 357 EFLRNQPQFQQMRQIIQQNPALLPALLQQLGRDNPQLLQQITEHQERFVQMLNEPQAGDT 416
Query: 339 GNVLGQLASA----MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 394
G G+ A A + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+L
Sbjct: 417 G---GEDADAHGSPHTNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFL 473
Query: 395 LDHMHEFE 402
L + E
Sbjct: 474 LQQTWDDE 481
>gi|452824592|gb|EME31594.1| nucleotide excision repair protein [Galdieria sulphuraria]
Length = 432
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 155/447 (34%), Positives = 229/447 (51%), Gaps = 80/447 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVT-TL 59
MK+ KTL+G F++E +D V++VK+ + VQG + S + LI GKVL + L
Sbjct: 1 MKLRFKTLQGKEFDLETSLDDTVAEVKRKVAAVQGFEQDALSCR-LIFSGKVLSNENEKL 59
Query: 60 EENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTS-TQPTTTSQTPA 116
++ V E+SF+VVM K + +S+ + A +A+TT TS + S T A
Sbjct: 60 QDLNVKEDSFLVVMPPKKTYQKTMGQSSSKTDAQGKEAETTRQKETTSESVQEKQSSTTA 119
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEAT 176
T+ A + P +S+ V GS E T
Sbjct: 120 VTINNNDRDETKATSSSQPTSG------------------------TSSDFVIGSQYETT 155
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE-------QTAVPPVARASA 229
V+ +++MG ++ + V RALRAA++NP+RAVEYL++GIPE QT++P
Sbjct: 156 VKNLMEMG---FEEQQVKRALRAAFHNPDRAVEYLFNGIPENLERELGQTSLPERTSPQV 212
Query: 230 GGQAGNPPAQTQAQQPAAPAPTSGPN----ANPLDLF-PQ--------GLPNMGSNAGAG 276
G TQ + + +S N + P ++F PQ G + GS G
Sbjct: 213 GH---TDRTATQENRTGSSGVSSIGNQATDSQPFNMFEPQRSQTAQQGGTESTGS---TG 266
Query: 277 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 336
+LDFL QF +R ++QANP+ILQPMLQEL + NP L+ LI ++Q +F+RL+NEP E
Sbjct: 267 SLDFLTRIPQFNVMRRLIQANPRILQPMLQELAQANPSLLDLIHQNQQEFVRLLNEPTED 326
Query: 337 GEG----------NVLGQLA--------SAMPQAVTVTPEEREAIERLEA----MGFDRA 374
EG N + L+ S+ + V+PEERE IERLE+ MG RA
Sbjct: 327 SEGLSDEQVQELLNSISGLSEGGNTGEESSGVSYIQVSPEEREQIERLESLVGPMGVSRA 386
Query: 375 LVLEVFFACNKNEELAANYLLDHMHEF 401
+LE + AC++NEELAANY+L ++ E+
Sbjct: 387 AILEAWLACDRNEELAANYILSNLEEY 413
>gi|410978807|ref|XP_003995779.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Felis catus]
Length = 387
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 150/399 (37%), Positives = 215/399 (53%), Gaps = 46/399 (11%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K ++
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 61
Query: 83 GA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A +T + PA +S+ P Q T+ APT P P S + PAPA A
Sbjct: 62 PAPATTQQSNPATTTTVSSTTAPAVVQVPTSPPALAPTPTPASITPASTTASSEPAPASA 121
Query: 141 ---PAPAPAPAPAPVSSSV------------SDVYGQAASNLVAGSNLEATVQQILDMGG 185
PA PA PV++S S+++ A S LV G + E V +I+ MG
Sbjct: 122 TKQEKPAEKPAETPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 186 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQP 245
++RE VI ALRA++NNP+RAVEYL GIP R S P T A Q
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGD-------RESQAVVDTPPAVSTGAPQS 231
Query: 246 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPML 305
+ A + A+ P G P L+FLRN QFQ +R ++Q NP +L +L
Sbjct: 232 SVAAAAATTTASTTTASPGGHP----------LEFLRNQPQFQQMRQIIQQNPSLLPALL 281
Query: 306 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLASAMPQAVTVT 356
Q++G++NP L++ I +HQ F++++NEPV+ + + S + VT
Sbjct: 282 QQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVT 341
Query: 357 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
P+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 342 PQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 380
>gi|413926352|gb|AFW66284.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 296
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 133/268 (49%), Positives = 159/268 (59%), Gaps = 43/268 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQH---------------------SNTPATRQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
PP P+ AP PP AP P PA AP + + AASNL++G N++ + Q
Sbjct: 100 PPLEAPQQAPQPPVAPITTSQPEGLPAQAP--------NTHDNAASNLLSGRNVDTIINQ 151
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPP 237
+++MGGGSWD++ V RALRAAYNNPERAVEYLYSGIP + AVP GGQ N
Sbjct: 152 LMEMGGGSWDKDKVQRALRAAYNNPERAVEYLYSGIPVTAEIAVP------IGGQGAN-- 203
Query: 238 AQTQAQQPAAPAPTSG-PNANPLDLFPQ 264
T + P A SG PN PLDLFPQ
Sbjct: 204 --TTDRAPTGEAGLSGIPNTAPLDLFPQ 229
>gi|158260839|dbj|BAF82597.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 157/415 (37%), Positives = 228/415 (54%), Gaps = 72/415 (17%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSG-- 110
Query: 123 QSVPESAPPPAA-----PAPAPAPAPAPAPAPAPVSSSVSDVYGQ-AASNLVAGSNLEAT 176
S PPPAA P+ AP +P V SS S G+ AAS LV GS E
Sbjct: 111 ----MSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGRGEDAASTLVTGSEYETM 166
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
++QPA + AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQ 249
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 350
NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + P
Sbjct: 250 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAP 308
Query: 351 QA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
Q + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 309 QMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|387017980|gb|AFJ51108.1| UV excision repair protein RAD23 homolog A-like [Crotalus
adamanteus]
Length = 360
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 154/410 (37%), Positives = 226/410 (55%), Gaps = 64/410 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I ++P++ V +K+ IE +G + +P S Q LI+ GK+L D ++E
Sbjct: 5 VTLKTLQQQTFKIRMEPDETVRVLKEKIEAEKGKEAFPVSGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
K+ E +FVVVM+TK+K T S AP + + + A PT+ +PT +S A TV+P
Sbjct: 65 KIDEKNFVVVMVTKNK-------TGSGAPVS---SPTDAAPTA-EPTPSSGPTAATVSPL 113
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILD 182
Q+ P S P P + +P + + SS AAS LV GS E + +I+
Sbjct: 114 QASPSSEEKP--PEESVTVSPLESTVGSVPSSGSMGREDDAASTLVTGSEYETMLTEIMS 171
Query: 183 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 242
MG ++RE V+ ALRA+YNNP RAVEYL +GIP G + A Q
Sbjct: 172 MG---YERERVVAALRASYNNPHRAVEYLLTGIP--------------GSSEPERAPIQE 214
Query: 243 QQPA-APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 301
QP PAP G L+FLR+ QFQ +R ++Q NP +L
Sbjct: 215 SQPQDQPAP----------------------EGENPLEFLRDQPQFQNMRQVIQQNPALL 252
Query: 302 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE--------GGEGNVLGQLASAMPQAV 353
+LQ+LG++NP L++ I +HQ F++++NEP+ GE +G+ A M +
Sbjct: 253 PALLQQLGQENPQLLQQISQHQEQFIQMLNEPLGEMADIADIEGEMGAIGEEAPQM-NYI 311
Query: 354 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 312 QVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 359
>gi|126323174|ref|XP_001366912.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Monodelphis domestica]
Length = 366
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 150/416 (36%), Positives = 216/416 (51%), Gaps = 80/416 (19%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I ++P + V +K+ IE +G D +P S Q LI+ GK+L D + +
Sbjct: 5 VTLKTLQQQTFKIRMEPGETVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
K+ E +FVVVM+TK+K A PA +S PP + P + A T+ P
Sbjct: 65 KIDEKNFVVVMVTKAK----------AGPA------TSVPPEPSAPAS-----ANTLEPS 103
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVY-------------GQAASNLVA 169
P + A P P PAP + ++ + AAS LV
Sbjct: 104 TPTPPAPTIVAMPLPPPAPNEEKKATEESAAGTLPEARPGSLPSSGSSGQEDDAASTLVT 163
Query: 170 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 229
GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL GIP S
Sbjct: 164 GSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLMGIP----------GSP 210
Query: 230 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 289
++G P Q ++Q P PAP G N L+FLR+ QFQ
Sbjct: 211 EPESG--PVQ-ESQAPEQPAPEGGENP---------------------LEFLRDQPQFQN 246
Query: 290 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLG 343
+R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G
Sbjct: 247 MRQVIQQNPSLLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPTGELADMSDVEGEV-G 305
Query: 344 QLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
+ PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL
Sbjct: 306 AIGEESPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQ 361
>gi|56789929|gb|AAH88364.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
Length = 362
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 156/415 (37%), Positives = 228/415 (54%), Gaps = 72/415 (17%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSG-- 110
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSSVSDVYGQ---AASNLVAGSNLEAT 176
S PPPAA +P+ APA +P S S G+ AAS LV GS E
Sbjct: 111 ----MSHPPPAAREDKSPSEESAPATSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
++QPA + AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQ 249
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 350
NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + P
Sbjct: 250 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAP 308
Query: 351 QA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
Q + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 309 QMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|4826964|ref|NP_005044.1| UV excision repair protein RAD23 homolog A isoform 1 [Homo sapiens]
gi|426387413|ref|XP_004060163.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Gorilla gorilla gorilla]
gi|1709983|sp|P54725.1|RD23A_HUMAN RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=hHR23A
gi|498146|dbj|BAA04767.1| HHR23A protein [Homo sapiens]
gi|1905912|gb|AAB51177.1| human RAD23A homolog [Homo sapiens]
gi|15559329|gb|AAH14026.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|23664450|gb|AAN39383.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|60813919|gb|AAX36280.1| RAD23-like A [synthetic construct]
gi|61355208|gb|AAX41114.1| RAD23-like A [synthetic construct]
gi|119604739|gb|EAW84333.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|119604740|gb|EAW84334.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|325464287|gb|ADZ15914.1| RAD23 homolog A (S. cerevisiae) [synthetic construct]
gi|410227880|gb|JAA11159.1| RAD23 homolog A [Pan troglodytes]
gi|410257472|gb|JAA16703.1| RAD23 homolog A [Pan troglodytes]
gi|410297508|gb|JAA27354.1| RAD23 homolog A [Pan troglodytes]
gi|410351505|gb|JAA42356.1| RAD23 homolog A [Pan troglodytes]
Length = 363
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 156/415 (37%), Positives = 227/415 (54%), Gaps = 71/415 (17%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSG-- 110
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSSVSDVYGQ---AASNLVAGSNLEAT 176
S PPPAA +P+ AP +P S S G+ AAS LV GS E
Sbjct: 111 ----MSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
++QPA A AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 250
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 350
NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + P
Sbjct: 251 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAP 309
Query: 351 QA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
Q + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 310 QMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|38492677|pdb|1OQY|A Chain A, Structure Of The Dna Repair Protein Hhr23a
gi|38492966|pdb|1QZE|A Chain A, Hhr23a Protein Structure Based On Residual Dipolar
Coupling Data
Length = 368
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 156/415 (37%), Positives = 227/415 (54%), Gaps = 71/415 (17%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 10 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 69
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 70 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSG-- 115
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSSVSDVYGQ---AASNLVAGSNLEAT 176
S PPPAA +P+ AP +P S S G+ AAS LV GS E
Sbjct: 116 ----MSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 171
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 172 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 218
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
++QPA A AG L+FLR+ QFQ +R ++Q
Sbjct: 219 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 255
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 350
NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + P
Sbjct: 256 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAP 314
Query: 351 QA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
Q + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 315 QMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 367
>gi|392996949|ref|NP_001257291.1| UV excision repair protein RAD23 homolog A isoform 2 [Homo sapiens]
gi|208965418|dbj|BAG72723.1| RAD23 homolog A [synthetic construct]
Length = 362
Score = 211 bits (536), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 155/415 (37%), Positives = 227/415 (54%), Gaps = 72/415 (17%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSG-- 110
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSSVSDVYGQ---AASNLVAGSNLEAT 176
S PPPAA +P+ AP +P S S G+ AAS LV GS E
Sbjct: 111 ----MSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
++QPA + AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQ 249
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 350
NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + P
Sbjct: 250 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAP 308
Query: 351 QA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
Q + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 309 QMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|395516067|ref|XP_003762216.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sarcophilus
harrisii]
Length = 482
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 153/408 (37%), Positives = 220/408 (53%), Gaps = 57/408 (13%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +++
Sbjct: 94 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAAAT 153
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQ--TPAPTVAPPQSVPESAPPPAAPAPAPA 140
ST S A Q+ ++ +S+ + +Q TP+P +AP + P PAA A P
Sbjct: 154 --STPSPATTQQSNPATTTTVSSSSAASVAQAPTPSPALAPTPTPTSVTPTPAAAACEPI 211
Query: 141 PA-------PAPAPAPAPV------------SSSVSDVYGQAASNLVAGSNLEATVQQIL 181
P PA P APV SS S+++ A S LV G + E V +I+
Sbjct: 212 PTSTPKEEKPAEKPVEAPVGISPTSSDSTLGDSSRSNLFEDATSALVTGQSYENMVTEIM 271
Query: 182 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGNPP 237
MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P AS G +
Sbjct: 272 SMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAAQSSAV 328
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
A A A T+ +P L+FLRN QFQ +R ++Q N
Sbjct: 329 AAAAATTTATTTTTTTSGGHP-------------------LEFLRNQPQFQQMRQIIQQN 369
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV--------EGGEGNVLGQLASAM 349
P +L +LQ++G++NP L++ I +HQ F++++NEPV GG + + S
Sbjct: 370 PSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQESGGQGGGGGGSGGIAEAGSGH 429
Query: 350 PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 430 MNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 477
>gi|297685061|ref|XP_002820118.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pongo abelii]
Length = 388
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 155/409 (37%), Positives = 221/409 (54%), Gaps = 65/409 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K S+
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 GA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
A +T +APA+ TSS T Q + TP P +AP S P S P +A A +
Sbjct: 62 PAPATTQQSAPASTTAVTSSTTTTVAQ----APTPVPALAP-TSTPASITPASATASSEP 116
Query: 141 PA--------PAPAPAPAPVS------------SSVSDVYGQAASNLVAGSNLEATVQQI 180
+ PA PA PV+ SS S+++ A S LV G + E V +I
Sbjct: 117 ASASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEI 176
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAGGQAGN 235
+ MG ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++ Q+
Sbjct: 177 MSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSA 233
Query: 236 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 295
A +SG G P L+FLRN QFQ +R ++Q
Sbjct: 234 VAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQ 272
Query: 296 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLA 346
NP +L +LQ++G++NP L++ I +HQ F++++NEPV+ + +
Sbjct: 273 QNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAG 332
Query: 347 SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 333 SGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 381
>gi|62089006|dbj|BAD92950.1| UV excision repair protein RAD23 homolog A variant [Homo sapiens]
Length = 379
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 155/415 (37%), Positives = 227/415 (54%), Gaps = 72/415 (17%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 82 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSG-- 127
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSSVSDVYGQ---AASNLVAGSNLEAT 176
S PPPAA +P+ AP +P S S G+ AAS LV GS E
Sbjct: 128 ----MSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 183
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 184 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 230
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
++QPA + AG L+FLR+ QFQ +R ++Q
Sbjct: 231 QESQVSEQPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQ 266
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 350
NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + P
Sbjct: 267 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAP 325
Query: 351 QA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
Q + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 326 QMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 378
>gi|242023622|ref|XP_002432231.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
gi|212517628|gb|EEB19493.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
Length = 344
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 147/407 (36%), Positives = 207/407 (50%), Gaps = 81/407 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F I++ V +K+ IE +G D YPA Q LI+ GK+L D T L
Sbjct: 1 MIITLKNLQQQTFTIDIDVNVTVKVLKEKIEAEKGKD-YPAVNQRLIYAGKILTDETPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E F+VVM+TK K+ PA A ++ S P T QT T
Sbjct: 60 EYKIDEKKFIVVMVTKPKL----------PPATHAGSSDSTPTPGTGDGGEKQTSDTTSN 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P PA V+S S +GQA S L+ G +++ I
Sbjct: 110 EP------------------------PASENVNSGAS--FGQAESALLMGDEYNQSLRNI 143
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+DMG + +E V RALRA++NNP+RAVEYL +GIP + V + GG+
Sbjct: 144 MDMG---YPKEQVERALRASFNNPDRAVEYLLNGIP--SDVDDTESSDVGGEE------- 191
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
P P T G +PL FLR+ QFQ +R ++QANPQ+
Sbjct: 192 NTLNPLTPD-TCGNEEDPLA-------------------FLRSQPQFQQMRQVIQANPQL 231
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG----------GEGNVLGQLASAM- 349
L +LQ++G+ NP L+++I ++Q F+R++NEP G G V G AS +
Sbjct: 232 LNAVLQQIGQTNPALLQIISQNQDAFVRMLNEPGTGSGATPAPPAAGGNPVSGGAASNVF 291
Query: 350 -PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
P + VTP+++EAIERL+A+GF LVLE +FAC+KNE LAAN+LL
Sbjct: 292 PPSVIQVTPQDKEAIERLKALGFPEHLVLEAYFACDKNENLAANFLL 338
>gi|449266094|gb|EMC77210.1| UV excision repair protein RAD23 like protein B, partial [Columba
livia]
Length = 378
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 145/396 (36%), Positives = 210/396 (53%), Gaps = 48/396 (12%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K ++
Sbjct: 1 VKALKEKIESERGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAAAG 60
Query: 83 GA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPA 140
S ++A ++ + P AP + ESAP A PA
Sbjct: 61 ATQQSDATSAVSSTTAAAVTVTAPVPTAAPVPDPVPPPPAPDEVACESAPVTAPEEEKPA 120
Query: 141 ---PAPAPAPAPAPVSSSVSD-----VYGQAASNLVAGSNLEATVQQILDMGGGSWDRET 192
P P A +P+ S+ D ++ A S LV G + E V +I+ MG ++RE
Sbjct: 121 EKTPEPPAAISPSSTESTTGDTSRSNLFEDAISALVTGQSYENMVTEIISMG---YEREQ 177
Query: 193 VIRALRAAYNNPERAVEYLYSGIP--EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAP 250
VI ALRA++NNP+RAVEYL GIP Q P AS G +Q+ A
Sbjct: 178 VIAALRASFNNPDRAVEYLLMGIPGDNQAVAEPSQAASTGA--------SQSSTVATSVA 229
Query: 251 TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGK 310
T +P S+ G L+FLRN QFQ +R ++Q NP +L +LQ++G+
Sbjct: 230 T--------------IPMTTSSLGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGR 275
Query: 311 QNPHLMRLIQEHQTDFLRLINEP-VE-------GGEGNVLGQLASA---MPQAVTVTPEE 359
+NP L++ I +HQ F+ ++NEP VE +G +G +A A + VTP+E
Sbjct: 276 ENPQLLQQISQHQEHFIHMLNEPAVESRQGLSGSDDGASIGGVAEAGNGHMNYIQVTPQE 335
Query: 360 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 336 KEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 371
>gi|296233062|ref|XP_002807846.1| PREDICTED: UV excision repair protein RAD23 homolog A [Callithrix
jacchus]
Length = 363
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 155/415 (37%), Positives = 226/415 (54%), Gaps = 71/415 (17%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFLPAPTSG-- 110
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSSVSDVYGQ---AASNLVAGSNLEAT 176
S PPPAA +P+ AP +P S S G+ AAS LV GS E
Sbjct: 111 ----MSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
++QPA A AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 250
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 350
NP +L +LQ+LG++NP L++ I HQ F++++NEP + E V G + P
Sbjct: 251 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEAEV-GAIGEEAP 309
Query: 351 QA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
Q + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 310 QMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|397487604|ref|XP_003814882.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Pan paniscus]
Length = 363
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 154/415 (37%), Positives = 225/415 (54%), Gaps = 71/415 (17%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K A + AP A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK-----AGQGTPAPPE-------ASPTAAPESSTSFPPAPTSG-- 110
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSSVSDVYGQ---AASNLVAGSNLEAT 176
S PPPAA +P+ AP +P S S G+ AAS LV GS E
Sbjct: 111 ----MSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
++QPA A AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 250
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 350
NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + P
Sbjct: 251 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAP 309
Query: 351 QA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
Q + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 310 QMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|348565217|ref|XP_003468400.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Cavia
porcellus]
Length = 362
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 153/423 (36%), Positives = 222/423 (52%), Gaps = 88/423 (20%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P S Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK K +G T+ APP + PT AP
Sbjct: 65 RIDEKNFVVVMVTKGK---AGQGTL-------------APPEIS----------PTAAPE 98
Query: 123 QSVP---ESAPPPAAPAPAPAPAPAPAPAPAPVSS-----------SVSDVYGQAASNLV 168
S P SAP + P+PA +P+ AP +S S AAS LV
Sbjct: 99 PSAPFQLTSAPGMSHPSPATRDDKSPSEESAPTASPESVSGSVPSSGSSGREEDAASTLV 158
Query: 169 AGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS 228
GS E + +I+ MG +DRE V+ ALRA+YNNP RAVEYL +GIP S
Sbjct: 159 TGSEYETMLTEIMSMG---YDRERVVAALRASYNNPHRAVEYLLTGIP----------GS 205
Query: 229 AGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 288
+ G+ ++QPA + AG L+FLR+ QFQ
Sbjct: 206 PEPEHGSIQESQASEQPA------------------------TEAGENPLEFLRDQPQFQ 241
Query: 289 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVL 342
++R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP V EG V
Sbjct: 242 SMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADVSDVEGEV- 300
Query: 343 GQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL
Sbjct: 301 GAMGEDAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QN 358
Query: 401 FED 403
F+D
Sbjct: 359 FDD 361
>gi|256082440|ref|XP_002577464.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|84657284|gb|ABC60029.1| DNA repair protein [Schistosoma mansoni]
gi|360044630|emb|CCD82178.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 354
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 143/396 (36%), Positives = 203/396 (51%), Gaps = 52/396 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTL F ++ + +D + DVKK IE GS+ + A Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLMQQTFVLDFQEDDLIGDVKKKIEAKWGSE-FDARTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ KV E+ FVVVM VS T A A + S P T+PTT ++P V
Sbjct: 60 DYKVTESGFVVVM----SVSKPSKDTTKEASA----SVQSNPTGETKPTTDKKSP---VT 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P S P + + P AP SS + G S+LV G N E V+++
Sbjct: 109 EANEAPSSKPDANSQSNLPTVTTAP--------SSATSTLGFGESSLVTGENFERVVKEL 160
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQ 239
+ MG ++R VI+A+RA +NNP+RA EYL SG IP V +
Sbjct: 161 MSMG---FERSLVIQAMRAGFNNPDRAFEYLSSGNIPNVDIV----------DQSREREE 207
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 299
+++ P P T P G ++GS L L QFQ +R +VQANP+
Sbjct: 208 SESVSPEGPGDTDTP----------GSESLGSEDPIAALASL---PQFQQMRALVQANPE 254
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 359
+L ++Q++G N L RLIQE++ FL IN PV G + S +T+T EE
Sbjct: 255 LLPQLIQQIGNDNADLFRLIQENEQAFLEFINTPVTG-----TTRPGSQRQTVLTMTAEE 309
Query: 360 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
R A++RL+A+GF LV++ ++AC KNE+ AAN+LL
Sbjct: 310 RAAVDRLKALGFPEELVIQAYYACEKNEDAAANFLL 345
>gi|338720420|ref|XP_003364163.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Equus caballus]
Length = 387
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 148/409 (36%), Positives = 210/409 (51%), Gaps = 66/409 (16%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK---- 57
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTT-------------------SQTPAPTVAPPQ 123
+ + APA Q+ S+ T + T S TPA T A +
Sbjct: 58 --AVTTPAPATTQQSNSATTTTVSSSTAPAAAQAPTPAPALAPAPTPASITPASTTASSE 115
Query: 124 SVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSV----SDVYGQAASNLVAGSNLEATVQQ 179
P SA PA PA AP + S+S S+++ A S LV G + E V +
Sbjct: 116 PAPASATKQEKPAEKPAEAPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTE 175
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQAGN 235
I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P AS G +
Sbjct: 176 IMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPAASTGAPQSS 232
Query: 236 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 295
A +SG G P L+FLRN QFQ +R ++Q
Sbjct: 233 VAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQMRQIIQ 271
Query: 296 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNVLGQLA 346
NP +L +LQ++G++NP L++ I +HQ F++++NEPV+ + +
Sbjct: 272 QNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAG 331
Query: 347 SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 332 SGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 380
>gi|402904431|ref|XP_003915049.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Papio anubis]
gi|355703206|gb|EHH29697.1| UV excision repair protein RAD23-like protein A [Macaca mulatta]
gi|383420439|gb|AFH33433.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 363
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 146/409 (35%), Positives = 221/409 (54%), Gaps = 59/409 (14%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPQP----- 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILD 182
+ E P AP +P P+ SS + AAS LV GS E + +I+
Sbjct: 117 -AAREDKSPSEESAPTTSPESVSGSVPSSGSSGREE---DAASTLVTGSEYETMLTEIMS 172
Query: 183 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 242
MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 173 MG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVS 219
Query: 243 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 302
+QPA A AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 220 EQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLP 256
Query: 303 PMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VT 354
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ +
Sbjct: 257 ALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQ 315
Query: 355 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 316 VTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|380815238|gb|AFE79493.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
gi|384948564|gb|AFI37887.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 362
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 145/409 (35%), Positives = 220/409 (53%), Gaps = 60/409 (14%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAAR-- 119
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILD 182
E P AP +P P+ SS + AAS LV GS E + +I+
Sbjct: 120 ----EDKSPSEESAPTTSPESVSGSVPSSGSSGREE---DAASTLVTGSEYETMLTEIMS 172
Query: 183 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 242
MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 173 MG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVS 219
Query: 243 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 302
+QPA + AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 220 EQPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLP 255
Query: 303 PMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VT 354
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ +
Sbjct: 256 ALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQ 314
Query: 355 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 315 VTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|410950560|ref|XP_003981972.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Felis catus]
Length = 362
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 145/409 (35%), Positives = 222/409 (54%), Gaps = 60/409 (14%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S PP P + P+PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPA---PASGMSQPSPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILD 182
+S E + P +P + + + SS S AAS LV GS E + +I+
Sbjct: 122 KSPSEESVPTTSPE---------SVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMS 172
Query: 183 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 242
MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 173 MG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVS 219
Query: 243 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 302
+QPA + G L+FLR+ QFQ +R ++Q NP +L
Sbjct: 220 EQPA------------------------TEGGENPLEFLRDQPQFQNMRQVIQQNPALLP 255
Query: 303 PMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VT 354
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ +
Sbjct: 256 ALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQ 314
Query: 355 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL FED
Sbjct: 315 VTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFED 361
>gi|37595434|gb|AAQ94603.1| RAD23 homolog B [Danio rerio]
Length = 380
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 149/411 (36%), Positives = 229/411 (55%), Gaps = 40/411 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +S+ A S++ ++ + TT+SA + +
Sbjct: 61 EYKIDEKNFVVVMVTKPKSASAPAPPSSSSSSSSSSTTASASAAPSAAPVSESPSEEEKK 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSV---SDVYGQAASNLVAGSNLEATV 177
P + P S P APA PVSS ++++ +A S L G + E V
Sbjct: 121 PSEEKPSSDP---------------APATTPVSSGSLPNANIFEEATSAL--GQSYENMV 163
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 237
+I+ MG ++R+ V+ ALRA++NNP+RAVEYL +GIP + V A +G+ P
Sbjct: 164 TEIMLMG---YERDRVVAALRASFNNPDRAVEYLLTGIPAEGEGSVVGAVDAVSPSGSTP 220
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQFQALRTMVQA 296
A A PA S P++ P S+A GA L+FLRN QF +R ++Q
Sbjct: 221 ASAPA--PAISTGLSSPSSTA--------PAQPSSASGANPLEFLRNQPQFLQMRQIIQQ 270
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA---- 352
NP +L +LQ++G++NP L++ I HQ F++++NEPV+ +
Sbjct: 271 NPSLLPALLQQIGRENPQLLQQISSHQEQFIQMLNEPVQEAGQGGGAGGVAEAGGGHMNY 330
Query: 353 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 331 IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQ--QNFDD 379
>gi|403302244|ref|XP_003941772.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Saimiri boliviensis boliviensis]
Length = 363
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 153/415 (36%), Positives = 223/415 (53%), Gaps = 71/415 (17%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK----AVQGTSAPP--------EASPTAAPESSTSFPPAPTSG-- 110
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSSVSDVYGQ---AASNLVAGSNLEAT 176
S PPPAA +P+ AP +P S S G+ AAS LV GS E
Sbjct: 111 ----MSHPPPAAGEDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YEREQVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
++QPA A AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 250
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMP 350
NP +L +LQ+LG++NP L++ I HQ F++++NEP + E V G + P
Sbjct: 251 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEAEV-GAIGEEAP 309
Query: 351 QA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
Q + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 310 QMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|194374237|dbj|BAG57014.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 154/415 (37%), Positives = 219/415 (52%), Gaps = 55/415 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPAP---APAPAPAPAPVS------------SSVSDVYGQA 163
P P SA + PAPA A PA PA PV+ SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 220
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 221 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 278
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 279 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG- 337
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 338 --------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACN 384
+ + S + VTP+E+EAIER+ + LVL ACN
Sbjct: 337 GQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERVSLSKTLKKLVLGWAHACN 391
>gi|345482490|ref|XP_003424606.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Nasonia vitripennis]
Length = 377
Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 144/424 (33%), Positives = 209/424 (49%), Gaps = 78/424 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L F +E+ V D+K IE +G +P+ Q LI+ GK+L D L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-V 119
E + E FVVVM++K K +S + + N +AP T++ PAP
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAP-------TSTPAPAPVQT 110
Query: 120 APPQSVPESAP---PPAAPAPAPAPAPAPAPA---PAPVSSSVSDVYGQAASNLVAGSNL 173
+ P V E+A P + P P AP P A P P S + S+ S L+ G
Sbjct: 111 SVPAQVTEAASVQAPSSVPVPTTAPTRTPETATQQPTPTSVATSN---PPESALLMGEEY 167
Query: 174 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 233
A V I+DMG ++R+ V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 168 NAMVNNIMDMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQLF------------- 211
Query: 234 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 293
+PP + Q A PA +AG L FLR QFQ +R +
Sbjct: 212 EDPPEEAAESQDALPA----------------------DAGQDPLAFLRTQPQFQQMRQV 249
Query: 294 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL-GQLASAMP-- 350
+Q NPQ+L P+LQ++G+ NP L++LI ++Q F+R++NEPV G SA P
Sbjct: 250 IQQNPQLLNPVLQQIGQTNPALLQLISQNQEAFVRMLNEPVGAASGGSTPASAISATPPV 309
Query: 351 -----------------QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 393
+ ++P+++EAIERL+++GF LV++ +FAC KNE LAAN+
Sbjct: 310 APGGLGAGAGAGVPGGPGVIQISPQDKEAIERLKSLGFPEDLVVQAYFACEKNENLAANF 369
Query: 394 LLDH 397
LL
Sbjct: 370 LLSQ 373
>gi|417410223|gb|JAA51588.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 380
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 150/410 (36%), Positives = 225/410 (54%), Gaps = 61/410 (14%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA-P 121
++ E +FVVVM+TK+K +S G S A +S+A P S+ TT+ PA ++ P
Sbjct: 82 RIDEKNFVVVMVTKAK-NSPGTSVPPEA-------SSTAAPESS--TTSPSAPASGMSHP 131
Query: 122 PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQIL 181
P ++ E P P +P P+ SS + AAS LV GS E + +I+
Sbjct: 132 PPTIREDKSPSEESVPTTSPESVSGSVPSSGSSGREE---DAASTLVTGSEYETMLTEIM 188
Query: 182 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 241
MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 189 SMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQV 235
Query: 242 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 301
++QPA A AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 236 SEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALL 272
Query: 302 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--V 353
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ +
Sbjct: 273 PALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYI 331
Query: 354 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 332 QVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 379
>gi|395850797|ref|XP_003797962.1| PREDICTED: UV excision repair protein RAD23 homolog A [Otolemur
garnettii]
Length = 362
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 149/416 (35%), Positives = 224/416 (53%), Gaps = 74/416 (17%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ + A+ PT+ T+T+ PAP
Sbjct: 65 RIDEKNFVVVMVTKAKAGQGTSAPLEAS------------PTAASETSTTFLPAPASGM- 111
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSSVSDVYGQ---AASNLVAGSNLEAT 176
S PPPAA +P+ P +P S S G+ AAS LV GS E
Sbjct: 112 -----SHPPPAAREDKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP G+P
Sbjct: 167 LTEIMSMG---YEREQVVAALRASYNNPHRAVEYLLTGIP-----------------GSP 206
Query: 237 -PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 295
P + Q+ S + P + AG L+FLR+ QFQ +R ++Q
Sbjct: 207 EPEHSSVQE-------SQVSEQP-----------ATEAGENPLEFLRDQPQFQNMRQVIQ 248
Query: 296 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAM 349
NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G +
Sbjct: 249 QNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEA 307
Query: 350 PQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 308 PQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|327264110|ref|XP_003216859.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Anolis
carolinensis]
Length = 364
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 152/411 (36%), Positives = 222/411 (54%), Gaps = 62/411 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I ++PE+ V +K+ IE +G D +P S Q LI+ GK+L D ++E
Sbjct: 5 VTLKTLQQQTFKIRMEPEETVRVLKEKIEAEKGKDSFPVSGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
K+ E +FVVVM+TK+K + SGA AP T++S P S+ T T A + P
Sbjct: 65 KIDEKNFVVVMVTKNK-AGSGA----PAPLPSEATSTSEPAPSSGQTQLPTTAAASPPPA 119
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILD 182
E PP +P + + P+ D AAS LV GS E + +I+
Sbjct: 120 APSGEEKPPEEPVTVSPQESIVSSIPPSGSMGREDD----AASTLVTGSEYETMLTEIMS 175
Query: 183 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 242
MG ++RE V+ ALRA+YNNP RAVEYL +GI
Sbjct: 176 MG---YERERVVAALRASYNNPHRAVEYLLTGI--------------------------- 205
Query: 243 QQPAAPAPTSGP--NANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
P +P P GP + P + Q +P G L+FLR+ QFQ +R ++Q NP +
Sbjct: 206 --PGSPEPERGPIQESQPQE---QPVPE-----GENPLEFLRDQPQFQNMRQVIQQNPAL 255
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE--------GGEGNVLGQLASAMPQA 352
L +LQ+LG++NP L++ I +HQ F++++NEP+ GE +G+ A M
Sbjct: 256 LPALLQQLGQENPQLLQQISQHQEQFIQMLNEPLGEMADIADIEGEMGAIGEEAPQM-NY 314
Query: 353 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+ VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 315 IQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 363
>gi|241713573|ref|XP_002412111.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
gi|215505188|gb|EEC14682.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
Length = 392
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 160/420 (38%), Positives = 222/420 (52%), Gaps = 49/420 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F++E+ P D V K+ IE +G + YPA Q LI+ GK+L D + +
Sbjct: 1 MIVTLKTLQQQSFKVEIDPSDTVKVFKEKIEVEKGKE-YPAQYQKLIYAGKILNDDSKMS 59
Query: 61 ENKVAENSFVVVMLTKSKVS--SSG---ASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP 115
E + E FVV+M+TK K SSG AS V AAP + T + T
Sbjct: 60 EYDIEEKKFVVIMVTKPKCGTPSSGEGAASPVVAAPVDVPGTPAP---AGAASGNAGATK 116
Query: 116 APTVAPPQS-VPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLE 174
P A + P +A PP+ PA PAPA A A ++ S A S LV G + +
Sbjct: 117 GPEAAGETTRSPTTAQPPSVPAQQTTPAPAAAAAAPTATTESSGGIALAESALVMGEDYQ 176
Query: 175 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA-----VPPVARASA 229
V QI++MG +D+ V RALRA++NNP+RAVEYL +G E PP A S
Sbjct: 177 RMVSQIMEMG---YDKPQVERALRASFNNPDRAVEYLLTGGNEGGNTEGGGAPPAAAQSP 233
Query: 230 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 289
G +A PP A P T G +GS L FLR QFQ
Sbjct: 234 GREAAAPPG-------ALPLSTEG---------------LGSGGAEDPLAFLRFQPQFQQ 271
Query: 290 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL------G 343
+R ++Q NPQ+L +LQ++G+ NP L++LI ++Q F+R++NEP G+ G
Sbjct: 272 MRQVIQQNPQLLNAVLQQIGQSNPQLLQLISQNQEAFVRMLNEPSPPPGGSGGRTPPAAG 331
Query: 344 QLASAMPQAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
L S P V VTP+++EAIERL+A+GF LV++ +FAC+KNE LAAN+LL ++
Sbjct: 332 ALGSGAPLEVNYGQVTPQDKEAIERLKALGFPEYLVIQAYFACDKNENLAANFLLSQNYD 391
>gi|327278100|ref|XP_003223800.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Anolis
carolinensis]
Length = 425
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 152/438 (34%), Positives = 223/438 (50%), Gaps = 63/438 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVGGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K +++ A + + + TT+ + T
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAAAPAPSPTTTQQSNDTTTTVSSSTIAAAAPKPAPVTAPAP 120
Query: 121 PPQSVPESAPP-PAAPAPAPAPAPAPAP---APAPVSS---------------SVSDVYG 161
S P + PP PAA PAP +P A P+ + S S+++
Sbjct: 121 ALVSTPVADPPTPAAVTCEPAPVSSPVEEKVAEKPIETPAATSTSTDSTTGDLSRSNLFE 180
Query: 162 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----E 217
A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 181 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRES 237
Query: 218 QTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT 277
Q P AS G A A T+ S+ G
Sbjct: 238 QGMTDPPQAASTGASPSAVAAAAAAAVTTTTTTTT-----------------TSSTGGHP 280
Query: 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 337
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 281 LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQES 340
Query: 338 --------------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVL 377
G V + S + VTP+E+EAIERL+A+GF LV+
Sbjct: 341 GQGGGGSGGGGGGGGGGGGGGGGVAAEAGSRHMNYIQVTPQEKEAIERLKALGFPEGLVI 400
Query: 378 EVFFACNKNEELAANYLL 395
+ +FAC KNE LAAN+LL
Sbjct: 401 QAYFACEKNENLAANFLL 418
>gi|345482492|ref|XP_001608155.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Nasonia vitripennis]
Length = 358
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 144/405 (35%), Positives = 209/405 (51%), Gaps = 59/405 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L F +E+ V D+K IE +G +P+ Q LI+ GK+L D L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-V 119
E + E FVVVM++K K +S + + N +AP T++ PAP
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAP-------TSTPAPAPVQT 110
Query: 120 APPQSVPESAP---PPAAPAPAPAPAPAPAPA---PAPVSSSVSDVYGQAASNLVAGSNL 173
+ P V E+A P + P P AP P A P P S + S+ S L+ G
Sbjct: 111 SVPAQVTEAASVQAPSSVPVPTTAPTRTPETATQQPTPTSVATSN---PPESALLMGEEY 167
Query: 174 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 233
A V I+DMG ++R+ V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 168 NAMVNNIMDMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQLF------------- 211
Query: 234 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 293
+PP + Q A PA +AG L FLR QFQ +R +
Sbjct: 212 EDPPEEAAESQDALPA----------------------DAGQDPLAFLRTQPQFQQMRQV 249
Query: 294 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-VEGGEGNVLGQLASAMPQA 352
+Q NPQ+L P+LQ++G+ NP L++LI ++Q F+R++NEP GG G G P
Sbjct: 250 IQQNPQLLNPVLQQIGQTNPALLQLISQNQEAFVRMLNEPVAPGGLGAGAGAGVPGGPGV 309
Query: 353 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
+ ++P+++EAIERL+++GF LV++ +FAC KNE LAAN+LL
Sbjct: 310 IQISPQDKEAIERLKSLGFPEDLVVQAYFACEKNENLAANFLLSQ 354
>gi|129277537|ref|NP_001076083.1| UV excision repair protein RAD23 homolog A [Bos taurus]
gi|182676545|sp|A3KMV2.1|RD23A_BOVIN RecName: Full=UV excision repair protein RAD23 homolog A
gi|126717366|gb|AAI33283.1| RAD23A protein [Bos taurus]
gi|296485920|tpg|DAA28035.1| TPA: UV excision repair protein RAD23 homolog A [Bos taurus]
Length = 362
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 148/412 (35%), Positives = 221/412 (53%), Gaps = 66/412 (16%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA-- 120
++ E +FVVVM+TK+K +S G S S A PT+T ++TS AP
Sbjct: 65 RIDEKNFVVVMVTKAK-TSPGTS-----------VPSEASPTATPESSTSFPSAPASGMS 112
Query: 121 -PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
PP + E P AP +P P+ S + AAS LV GS E + +
Sbjct: 113 HPPPTAREDKSPSEESAPTTSPESVSGSVPSSGSGGREE---DAASTLVTGSEYETMLTE 169
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 170 IMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQES 216
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 299
++QP+ + AG L+FLR+ QFQ +R ++Q NP
Sbjct: 217 QVSEQPS------------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPA 252
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA- 352
+L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ
Sbjct: 253 LLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEV-GAIGEEAPQMN 311
Query: 353 -VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+ VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 312 YIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|383860341|ref|XP_003705649.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Megachile rotundata]
Length = 365
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 146/429 (34%), Positives = 212/429 (49%), Gaps = 94/429 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAEHQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + A+ + T + +TTS P P+
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTA---------AEEDHTNTETKEESSTTSSVPEPSSN 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P SV + A P + A + A S++ GQA S L+ G N V I
Sbjct: 109 P--SV-QGASNPVSTAQEQSAA----------STATECAGGQAESALLMGENYNTMVNNI 155
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q
Sbjct: 156 MDMG---YEREQVEQALRASFNNPDRAVEYLVTGIPAQLF------------EDLPEDQL 200
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+AQ+ + G L FLR QFQ +R ++Q NPQ+
Sbjct: 201 EAQE------------------------QFQDHGQHPLAFLRMQPQFQQMREVIQQNPQL 236
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG----------------------GE 338
L MLQ++G+ NP L++LI ++Q F+R++NEPVE G
Sbjct: 237 LNAMLQQIGQTNPALLQLISQNQEAFVRMLNEPVETTGGTGGRTTPVSASTVAPTSAPGG 296
Query: 339 GNVLGQLASAM-------PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 391
GN G +A A + +TP+++EAIERL+A+GF LV++ +FAC KNE LAA
Sbjct: 297 GNS-GPVAGARRGGPFVETSIIEITPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAA 355
Query: 392 NYLLDHMHE 400
N+LL +H+
Sbjct: 356 NFLLSQIHD 364
>gi|149641954|ref|XP_001513724.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ornithorhynchus anatinus]
Length = 360
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 144/410 (35%), Positives = 210/410 (51%), Gaps = 64/410 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++PE+ V +K+ IE +G D +P + Q LI+ GK+L D T + +
Sbjct: 5 ITLKTLQQQTFKIRMEPEETVKVLKEKIEAEKGQDAFPVAGQKLIYAGKILNDDTPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
K+ E +FVVVM+TK+K + APA++ ++ A P T P
Sbjct: 65 KIDEKNFVVVMVTKTKSGLGTSVPPETAPASEPSVSAPAASIVAMPLT-----------P 113
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILD 182
S E P P P P P+ S D AAS LV GS E + +I+
Sbjct: 114 SSPKEERPTADNPTSLPPPETVTGSVPSSGSIGRED---DAASTLVTGSEYETMLTEIMS 170
Query: 183 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 242
MG +++E V+ ALRA++NNP RAVEYL GI
Sbjct: 171 MG---YEQEQVVAALRASFNNPHRAVEYLLMGI--------------------------- 200
Query: 243 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 302
P +P P GP Q G L+FLR+ QFQ +R ++Q NP +L
Sbjct: 201 --PGSPEPEGGPIQE-----SQSNEQAAVEGGENPLEFLRDQPQFQNMRQVIQQNPALLP 253
Query: 303 PMLQELGKQNPHLMRLIQEHQTDFLRLINEP---------VEGGEGNVLGQLASAMPQAV 353
+LQ+LG++NPHL++ I HQ F++++NEP +E GE +G + M +
Sbjct: 254 ALLQQLGQENPHLLQQISLHQEQFIQMLNEPSGELGDMSDIE-GEIGAIGDEPTQM-SYI 311
Query: 354 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 312 QVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 359
>gi|73986456|ref|XP_542038.2| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Canis lupus familiaris]
Length = 362
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 144/409 (35%), Positives = 221/409 (54%), Gaps = 60/409 (14%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S PP P + P PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPA---PASGMSHPPPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILD 182
+S E + P +P + + + SS S AAS LV GS E + +I+
Sbjct: 122 KSPSEESVPTTSPE---------SVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMS 172
Query: 183 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 242
MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 173 MG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVS 219
Query: 243 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 302
+QPA + G L+FLR+ QFQ +R ++Q NP +L
Sbjct: 220 EQPA------------------------TEGGENPLEFLRDQPQFQNMRQVIQQNPALLP 255
Query: 303 PMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VT 354
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ +
Sbjct: 256 ALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQ 314
Query: 355 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 315 VTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|426228902|ref|XP_004008534.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Ovis aries]
Length = 365
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 147/412 (35%), Positives = 221/412 (53%), Gaps = 63/412 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA-- 120
++ E +FVVVM+TK+K +S G S S A PT+T ++TS AP
Sbjct: 65 RIDEKNFVVVMVTKAK-TSPGTS-----------VPSEASPTATPESSTSFPSAPASGMS 112
Query: 121 -PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
PP + E P AP +P P+ SS + AA + V GS E + +
Sbjct: 113 HPPPTAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDVAFAAPSTVTGSEYETMLTE 172
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 173 IMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQES 219
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 299
++QP+ + AG L+FLR+ QFQ +R ++Q NP
Sbjct: 220 QVSEQPS------------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPA 255
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA- 352
+L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ
Sbjct: 256 LLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEV-GAIGEEAPQMN 314
Query: 353 -VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+ VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 315 YIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 364
>gi|51230604|ref|NP_001003739.1| UV excision repair protein RAD23 homolog A [Danio rerio]
gi|50925991|gb|AAH79526.1| RAD23 homolog A (S. cerevisiae) [Danio rerio]
gi|182889188|gb|AAI64761.1| Rad23a protein [Danio rerio]
Length = 362
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 151/416 (36%), Positives = 225/416 (54%), Gaps = 68/416 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +I++ E V +K+ IE +G D +P + Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIDIDDEQTVKALKEKIEAEKGRDSFPVAGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM++K+K S G S + P+ +SS+ +S P +
Sbjct: 61 EYKIDEKNFVVVMVSKTK--SPGTSAAPSEPSRSMAASSSSSSSSPPPPPPPAPAPAAIP 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQ---AASNLVAGSNLEATV 177
P PPA +PA +P +DV G+ A+S LV G +A +
Sbjct: 119 FTDECPRD-DPPATVSPASSP------------DGGTDVVGEGEDASSTLVTGQEYDAML 165
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 237
I+ MG ++R+ V+ AL+A+YNNP RAVEYL +GIP PV Q NP
Sbjct: 166 TNIMSMG---YERDKVVAALKASYNNPHRAVEYLLNGIP----TVPV-------QETNPA 211
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
AQ P PT G N L+FLR+ QFQ++R ++Q N
Sbjct: 212 P---AQLPTDTQPTEGENP---------------------LEFLRSQPQFQSMRQVIQQN 247
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--------LGQLAS-A 348
P +L +LQ+LG++NP L++ I +HQ F++++N PV GEG + LG + A
Sbjct: 248 PSLLPALLQQLGQENPELLQQISQHQELFIQMLNAPVGEGEGELGEGGEFADLGAIGDEA 307
Query: 349 MPQA-VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
P + + VT +E+EAIERL+A+GF ALV++ +FAC KNE LAAN+LL+ FED
Sbjct: 308 APGSFIQVTQQEKEAIERLKALGFSEALVVQAYFACEKNENLAANFLLN--QNFED 361
>gi|345482494|ref|XP_003424607.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Nasonia vitripennis]
Length = 367
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 141/414 (34%), Positives = 206/414 (49%), Gaps = 68/414 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L F +E+ V D+K IE +G +P+ Q LI+ GK+L D L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT-V 119
E + E FVVVM++K K +S + + N +AP T++ PAP
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAP-------TSTPAPAPVQT 110
Query: 120 APPQSVPESAP---PPAAPAPAPAPAPAPAPA---PAPVSSSVSDVYGQAASNLVAGSNL 173
+ P V E+A P + P P AP P A P P S + S+ S L+ G
Sbjct: 111 SVPAQVTEAASVQAPSSVPVPTTAPTRTPETATQQPTPTSVATSN---PPESALLMGEEY 167
Query: 174 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 233
A V I+DMG ++R+ V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 168 NAMVNNIMDMG---YERDQVEQALRASFNNPDRAVEYLLTGIPAQLF------------- 211
Query: 234 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 293
+PP + Q A PA +AG L FLR QFQ +R +
Sbjct: 212 EDPPEEAAESQDALPA----------------------DAGQDPLAFLRTQPQFQQMRQV 249
Query: 294 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN----------VLG 343
+Q NPQ+L P+LQ++G+ NP L++LI ++Q F+R++NEP G
Sbjct: 250 IQQNPQLLNPVLQQIGQTNPALLQLISQNQEAFVRMLNEPASAISATPPVAPGGLGAGAG 309
Query: 344 QLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
P + ++P+++EAIERL+++GF LV++ +FAC KNE LAAN+LL
Sbjct: 310 AGVPGGPGVIQISPQDKEAIERLKSLGFPEDLVVQAYFACEKNENLAANFLLSQ 363
>gi|432095937|gb|ELK26853.1| UV excision repair protein RAD23 like protein A [Myotis davidii]
Length = 363
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 152/410 (37%), Positives = 226/410 (55%), Gaps = 61/410 (14%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +SSG S A + A +S++ P + + S TP PTV
Sbjct: 65 RIDEKNFVVVMVTKAK-NSSGTSVPPEASSTAAPESSTSFPLAP-ASGMSHTP-PTVRED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILD 182
+S E + P A+P + + + SS S AAS LV GS E + +I+
Sbjct: 122 RSPSEESVPTASPE---------SVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMS 172
Query: 183 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-PAQTQ 241
MG ++RE V+ ALRA+YNNP RAVEYL +GIP G+P P
Sbjct: 173 MG---YERERVVAALRASYNNPHRAVEYLLTGIP-----------------GSPEPEHGS 212
Query: 242 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 301
Q+ TS P AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 213 VQESQVSEQTS---TEP--------------AGENPLEFLRDQPQFQNMRQVIQQNPALL 255
Query: 302 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--V 353
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ +
Sbjct: 256 PALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDIEGEV-GAIGEEAPQMNYI 314
Query: 354 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 315 QVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|47205078|emb|CAF91196.1| unnamed protein product [Tetraodon nigroviridis]
Length = 320
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 145/397 (36%), Positives = 204/397 (51%), Gaps = 82/397 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM VS GA +QT PTV
Sbjct: 61 EYKIDERNFVVVM-----VSKVGAG--------------------------NQTHRPTV- 88
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
S+ P A SSS A+S LV G+ EA + +I
Sbjct: 89 -------SSRPLAF-----------------CSSSDGSQGLDASSALVTGAEYEAMLTEI 124
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+ MG ++RE V+ ALRA++NNP RAVEYL +GIP PV ++ QA PA
Sbjct: 125 ISMG---YERERVVAALRASFNNPHRAVEYLLTGIPS----SPVQESNPPAQA---PAPL 174
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+ PA+PA P A P G L FLRN QF +R +Q NP +
Sbjct: 175 PTESPASPAEGCFP-ACP---------------GENPLAFLRNQPQFLHMRQAIQQNPNL 218
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 360
L +LQ+LG++NP L++ I +HQ F++++NEPV G + + VTP+E+
Sbjct: 219 LSALLQQLGQENPQLLQQINQHQERFIQMLNEPVGEGGELGAAGEEGSSVNYIQVTPQEK 278
Query: 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
EAIER +A+GF ALV++ +FAC KNE LAAN+LL+
Sbjct: 279 EAIERFKALGFPEALVIQAYFACEKNENLAANFLLNQ 315
>gi|431898018|gb|ELK06725.1| UV excision repair protein RAD23 like protein A [Pteropus alecto]
Length = 363
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 150/414 (36%), Positives = 220/414 (53%), Gaps = 69/414 (16%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++ ++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMELDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S S P A PT+ ++TS +PAP
Sbjct: 65 RIDEKNFVVVMVTKAKTSPG----TSVPP--------EASPTAAPESSTSFSPAPASGMS 112
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYG-----QAASNLVAGSNLEATV 177
S PP A +P+ P +P VS SV AAS LV GS E +
Sbjct: 113 HS-----PPTAREDKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETML 167
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 237
+I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 168 TEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQ 214
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
++QPA A AG L+FLR+ QFQ +R ++Q N
Sbjct: 215 ESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQN 251
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQ 351
P +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ
Sbjct: 252 PALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQ 310
Query: 352 A--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+ VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 311 MNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|213512547|ref|NP_001135284.1| UV excision repair protein RAD23 homolog A [Salmo salar]
gi|209156014|gb|ACI34239.1| UV excision repair protein RAD23 homolog A [Salmo salar]
Length = 387
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 148/429 (34%), Positives = 223/429 (51%), Gaps = 69/429 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKTLKEKIENEKGKDGFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSS-----SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP 115
E K+ E +FVVVM+ K KV+ SGA+T + + ++A S P
Sbjct: 61 EYKIDEKNFVVVMVAKPKVAPAAAQPSGATTTTTSSTTVPTVPAAALSGSDNP------- 113
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEA 175
P PE P P+ APA P + +++ +++ +A S LV G + E
Sbjct: 114 -----PEGGKPEDKPAEERPSNTSAPASTPTSSSGLLAN--VNMFEEATSALVTGQSYEN 166
Query: 176 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE----QTAVPPVARASAGG 231
V +++ MG ++RE V+ +LRA++NNP+RAVEYL +GIP + PV GG
Sbjct: 167 MVTEMMLMG---YEREQVVASLRASFNNPDRAVEYLLTGIPAGEEGHASADPVVPPVGGG 223
Query: 232 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT----LDFLRNSQQF 287
PA +G P + GS A A T L FL N QF
Sbjct: 224 ---------------TPALNTGSMTTP--------ASTGSLASAATGANPLGFLVNQPQF 260
Query: 288 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-------------V 334
+R ++Q NP +L +LQ++G++NP L++ I HQ F++++NEP
Sbjct: 261 LQMRQIIQQNPSLLPALLQQIGRENPQLLQQISSHQEQFIQMLNEPAQEGGQGGGGVGGG 320
Query: 335 EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 394
G V G+ S M + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+L
Sbjct: 321 GGVGVGVGGEAGSGM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFL 379
Query: 395 LDHMHEFED 403
L F+D
Sbjct: 380 LQ--QNFDD 386
>gi|344271527|ref|XP_003407589.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Loxodonta africana]
Length = 613
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 144/414 (34%), Positives = 206/414 (49%), Gaps = 75/414 (18%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct: 227 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK---- 282
Query: 83 GASTVSAAPANQAQTT--------------------------SSAPPTSTQP--TTTSQT 114
+ + APA Q+ ++ PTS P TT S
Sbjct: 283 --AVTTPAPATPQQSNPATTAAVSSSTAAAVAQAPAPAPALAPTSTPTSITPASTTASSE 340
Query: 115 PAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLE 174
PAP A Q P P P A + SS S+++ A S LV G + E
Sbjct: 341 PAPASATQQEKPTEKP-----TETPVAASPTSTDSTSGDSSRSNLFEDATSALVTGQSYE 395
Query: 175 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAG 230
V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P AS G
Sbjct: 396 NMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTG 452
Query: 231 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 290
T +A +++G L+FLRN QFQ +
Sbjct: 453 --------------------TPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQM 492
Query: 291 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNV 341
R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 493 RQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGG 552
Query: 342 LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 553 IAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 606
>gi|256082442|ref|XP_002577465.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|360044631|emb|CCD82179.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 341
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 200/396 (50%), Gaps = 65/396 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTL F ++ + +D + DVKK IE GS+ + A Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLMQQTFVLDFQEDDLIGDVKKKIEAKWGSE-FDARTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ KV E+ FVVVM VS T A A + S P T+PTT ++P
Sbjct: 60 DYKVTESGFVVVM----SVSKPSKDTTKEASA----SVQSNPTGETKPTTDKKSPVT--- 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
A AP+ AP SS + G S+LV G N E V+++
Sbjct: 109 -----------EANEAPSITTAP----------SSATSTLGFGESSLVTGENFERVVKEL 147
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPAQ 239
+ MG ++R VI+A+RA +NNP+RA EYL SG IP V +
Sbjct: 148 MSMG---FERSLVIQAMRAGFNNPDRAFEYLSSGNIPNVDIV----------DQSREREE 194
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 299
+++ P P T P G ++GS L L QFQ +R +VQANP+
Sbjct: 195 SESVSPEGPGDTDTP----------GSESLGSEDPIAALASL---PQFQQMRALVQANPE 241
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 359
+L ++Q++G N L RLIQE++ FL IN PV G + S +T+T EE
Sbjct: 242 LLPQLIQQIGNDNADLFRLIQENEQAFLEFINTPVTG-----TTRPGSQRQTVLTMTAEE 296
Query: 360 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
R A++RL+A+GF LV++ ++AC KNE+ AAN+LL
Sbjct: 297 RAAVDRLKALGFPEELVIQAYYACEKNEDAAANFLL 332
>gi|351711552|gb|EHB14471.1| UV excision repair protein RAD23-like protein A [Heterocephalus
glaber]
Length = 363
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 148/414 (35%), Positives = 217/414 (52%), Gaps = 69/414 (16%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G ST+ APP PT + P P
Sbjct: 65 RIDEKNFVVVMVTKAK---AGQSTL-------------APP-EVSPTAAPEPSTPFQLSP 107
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYG-----QAASNLVAGSNLEATV 177
S PP +P+ A +P V SV AAS LV GS E +
Sbjct: 108 ASGMSHPPPATREDKSPSQESATTTSPESVLGSVPSSGSSGREEDAASTLVTGSEYETML 167
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 237
+I+ MG ++RE VI ALRA+YNNP RAVEYL +GIP + + G+
Sbjct: 168 MEIMSMG---YERERVIAALRASYNNPHRAVEYLLTGIP----------GNPEPEHGSIQ 214
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
++QPA A AG L+FLR+ QFQ +R ++Q N
Sbjct: 215 ESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQN 251
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQ 351
P +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ
Sbjct: 252 PALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEDAPQ 310
Query: 352 A--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+ VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 311 MNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|340716523|ref|XP_003396747.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Bombus terrestris]
Length = 337
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 138/395 (34%), Positives = 203/395 (51%), Gaps = 64/395 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + + SS + QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ A P A + A S++ V GQA S L+ G + V I
Sbjct: 112 ------QGASNPTNTAQEQSEA----------STTAGCVGGQAESALLMGEDYNTMVNNI 155
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q
Sbjct: 156 VDMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQL 200
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+AQ+ + G L FLR QFQ +R ++Q NPQ+
Sbjct: 201 EAQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQL 236
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 360
L +LQ++G+ NP L++LI ++Q F+R++NEP +GG G +G + + VTP+++
Sbjct: 237 LNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPGDGGLGAGIGAGSDVEASVIQVTPQDK 296
Query: 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 297 EAIERLKALGFPEHLVVQAYFACEKNENLAANFLL 331
>gi|344282700|ref|XP_003413111.1| PREDICTED: UV excision repair protein RAD23 homolog A [Loxodonta
africana]
Length = 363
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 147/412 (35%), Positives = 218/412 (52%), Gaps = 65/412 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA-- 120
++ E +FVVVM+TK+K A P A +S PT+ ++TS PAP
Sbjct: 65 RIDEKNFVVVMVTKAK----------AGPGTSAPPETS--PTAAPESSTSFPPAPASGMS 112
Query: 121 -PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
PP + E P P +P P+ SS + AAS LV GS E + +
Sbjct: 113 HPPPTAKEDKSPSEESVPTMSPESVSGSVPSSGSSGREE---DAASTLVTGSEYETMLTE 169
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + +
Sbjct: 170 IMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHSSVQES 216
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 299
++QPA A G L+FLR+ QFQ +R ++Q NP
Sbjct: 217 QVSEQPATEA-----------------------VGDNPLEFLRDQPQFQNMRQVIQQNPA 253
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA- 352
+L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ
Sbjct: 254 LLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMN 312
Query: 353 -VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+ VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 313 YIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|335282758|ref|XP_003123386.2| PREDICTED: UV excision repair protein RAD23 homolog A-like [Sus
scrofa]
Length = 363
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 147/414 (35%), Positives = 220/414 (53%), Gaps = 69/414 (16%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S P PA ++ P
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFP----------LAPASGMSHP 114
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYG-----QAASNLVAGSNLEATV 177
P PA +P+ P +P VS SV AAS LV GS E +
Sbjct: 115 -------PSPAREDKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETML 167
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 237
+I MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 168 TEITSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQ 214
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
++QP PT NP L+FLR+ QFQ +R ++Q N
Sbjct: 215 ESQVSEQP----PTEAAGENP-------------------LEFLRDQPQFQNMRQVIQQN 251
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQ 351
P +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ
Sbjct: 252 PALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQ 310
Query: 352 A--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+ VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 311 MNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|83415124|ref|NP_001032776.1| uncharacterized protein LOC562839 [Danio rerio]
gi|79154071|gb|AAI08001.1| Zgc:123349 [Danio rerio]
Length = 404
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 157/435 (36%), Positives = 228/435 (52%), Gaps = 65/435 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F++++ E V +K+ IE +G D +PA Q LI+ GK+L D L+
Sbjct: 2 LTITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPLK 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGAST----VSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
E K+ E +FVVVM+TK K ++S + VS P +Q TT APP ++ T+ PA
Sbjct: 62 EYKIDEKNFVVVMVTKPKSAASPQTPTPVPVSETPTHQP-TTPVAPPNASIVPETTPDPA 120
Query: 117 PTVAPPQSV-----PESAPP-----------PAAPAPAPA----PAPAPAPAPAPVSSSV 156
P V P SV P +APP P + PAPA A A +S+
Sbjct: 121 P-VEPAASVEPIDPPVTAPPAASEDTVETTEPVSATPAPAVEEEIQGQEEQAIAQSEASL 179
Query: 157 SD---VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 213
+D + AAS LV G E V +I+ MG ++RE VI ALRA++NNP+RAVEYL +
Sbjct: 180 TDELSLLEAAASILVTGQAYENLVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLT 236
Query: 214 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 273
GIP ++ PP Q+ P P S P G+ +
Sbjct: 237 GIPAESEQPP-------------------QEVVRPTPVSNPTPPAPQRAQPPPAAAGAES 277
Query: 274 -----GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 328
A L+FLR+ QFQ +R ++Q NP +L +LQ+LG+ NP L++ I +HQ F++
Sbjct: 278 GGAQASANPLEFLRHQPQFQQMRQIIQQNPSLLPALLQQLGRDNPQLLQQITQHQERFVQ 337
Query: 329 LINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 388
++N A+ + VTP+E+EAIERL+A+GF LV++ +FAC KNE
Sbjct: 338 MLN-------EPEAEAPAAPQTNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNEN 390
Query: 389 LAANYLLDHMHEFED 403
LAAN+LL F+D
Sbjct: 391 LAANFLLQ--QNFDD 403
>gi|149037839|gb|EDL92199.1| RAD23a homolog (S. cerevisiae) [Rattus norvegicus]
Length = 363
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 150/433 (34%), Positives = 215/433 (49%), Gaps = 107/433 (24%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K T APP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQG-----------------------------------TPAPP 89
Query: 123 QSVPESAPPPAAPAPAPAPA-----PAPAPAPAPVSSSVSDVYG---------------- 161
++ P +AP P+ P P PAPA P P+ SS S
Sbjct: 90 EASPTAAPEPSTPFP-PAPASGMSHPPPSNREDKSSSEESATTTSPESISGSVPSSGSSG 148
Query: 162 ---QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 218
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 149 REEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP-- 203
Query: 219 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 278
S + G+ +QPA A AG L
Sbjct: 204 --------GSPEPEHGSVQESQAPEQPATEA-----------------------AGENPL 232
Query: 279 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP----- 333
+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 233 EFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELA 292
Query: 334 -VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 390
+ EG V G L PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LA
Sbjct: 293 DISDVEGEV-GALGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLA 351
Query: 391 ANYLLDHMHEFED 403
AN+LL F+D
Sbjct: 352 ANFLLS--QNFDD 362
>gi|345565734|gb|EGX48682.1| hypothetical protein AOL_s00079g321 [Arthrobotrys oligospora ATCC
24927]
Length = 408
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 149/431 (34%), Positives = 217/431 (50%), Gaps = 67/431 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ K LK F IE D +S VK I+T +G + S LI+ GK+L+D T+
Sbjct: 5 VKLTFKDLKNERFTIEAGTADTISTVKARIQTEKG---WEPSTVKLIYSGKILQDAQTVG 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K+K T A ++ + S P S+ P T P A
Sbjct: 62 SYNIDEKGFIVCMVSKAK-------TAPKASSSSSAAAPSTPVKSSTPVQTPSAPIANAA 114
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+VP + P P PAP A P +++ +D S+L GS E+ + Q+
Sbjct: 115 SSSTVPAAVPE------TPTPAPQVAATSQPTTAAFND-----PSSLAMGSARESAILQM 163
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVARASAGGQAGNPPA 238
+MG + R V A+RAA+NNP+RAVEYL +GIPE Q PP + A PP
Sbjct: 164 TEMG---FPRPDVEAAMRAAFNNPDRAVEYLMTGIPEHLQREAPPAQSSRA------PPT 214
Query: 239 QTQA-----------QQPAAPAPTSGPNANPLDLF---------PQGLPNMGSNAGA--- 275
Q QPAA A + P++LF +G P G A
Sbjct: 215 QPTTGATAAPAATTESQPAAAAAAAADVDEPVNLFEAAAAQRSGSRGTPAGGRGGAAVNP 274
Query: 276 ---------GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDF 326
LDFLRN+ QFQ LR ++Q +PQ+L+P+LQ++G+ NP L +LI + F
Sbjct: 275 LAALAGGGGANLDFLRNNPQFQQLRQVIQEHPQMLEPILQQVGQANPQLAQLISTNPEGF 334
Query: 327 LRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKN 386
LRL+ E ++ E A+ VT EER+AIERL +GF+R +V++ +FAC+KN
Sbjct: 335 LRLLGEGIDEEELAGAAPGGGL---AIHVTEEERDAIERLCQLGFERDVVIQAYFACDKN 391
Query: 387 EELAANYLLDH 397
EE+AAN+L ++
Sbjct: 392 EEMAANFLFEN 402
>gi|1044897|emb|CAA63145.1| MHR23A [Mus musculus]
gi|1587277|prf||2206377A MHR23A gene
Length = 363
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 146/409 (35%), Positives = 217/409 (53%), Gaps = 59/409 (14%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K + G S AP + T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAK-AGQGIS----APPEASPTAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILD 182
S + +P + + + + + S D AAS LV GS E + +I+
Sbjct: 117 TSREDKSPSEESTTTTSPESISGSVPSSGSSGREED----AASTLVTGSEYETMLTEIMS 172
Query: 183 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 242
MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +A
Sbjct: 173 MG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQRA 219
Query: 243 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 302
+QPA A AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 220 EQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLP 256
Query: 303 PMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VT 354
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ +
Sbjct: 257 ALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQ 315
Query: 355 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 316 VTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|226470142|emb|CAX70352.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489693|emb|CAX74997.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489695|emb|CAX74998.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489697|emb|CAX74999.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
Length = 350
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 143/397 (36%), Positives = 211/397 (53%), Gaps = 58/397 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTLK F ++++ +D V DVKK IE +GS+ + AS Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLKQQTFVLDLQEDDLVGDVKKKIEAERGSE-FDASTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ KV ++ FVVVM + SK + G+++ AP N P +PTT + P V
Sbjct: 60 DYKVTDSGFVVVM-SVSKPAKEGSAS---APGN--------PAGEGRPTTDKKIPDVDVT 107
Query: 121 -PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
P S P++ P+ P S+ ++ G S+LV G N E VQ+
Sbjct: 108 ESPSSKPDANSQPSLPTVTTT------------QSTTTNTLGFGESSLVTGENFERVVQE 155
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPA 238
++ MG +++ VIRA+RA +NNP+RA EYL SG IP V + P+
Sbjct: 156 LVSMG---FEKPLVIRAMRAGFNNPDRAFEYLSSGNIPNIDIV-------------DQPS 199
Query: 239 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 298
Q + + +P P D G + GS L L QFQ +R +VQANP
Sbjct: 200 QREGSESVSPEA-------PGDADTPGSESAGSEDPIAALASL---PQFQQMRALVQANP 249
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 358
++L ++Q++G N L RLIQE++ FL +N PV G + A +T+T E
Sbjct: 250 ELLPQLIQQIGNDNADLFRLIQENEQAFLEFLNTPVTG-----TTRPAGQRQTILTMTAE 304
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
ER A++RL+A+GF LV++ ++AC KNE+ AAN+LL
Sbjct: 305 ERAAVDRLKALGFPEELVIQAYYACEKNEDAAANFLL 341
>gi|327493259|gb|AEA86336.1| putative DNA repair protein [Solanum nigrum]
Length = 172
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/155 (64%), Positives = 123/155 (79%), Gaps = 1/155 (0%)
Query: 249 APTSG-PNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQE 307
AP+SG PN+ PL+LFPQ AG G+LDFL N+QQFQALR+MVQANPQIL+PMLQE
Sbjct: 18 APSSGTPNSAPLNLFPQENVAGAGGAGLGSLDFLMNNQQFQALRSMVQANPQILRPMLQE 77
Query: 308 LGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLE 367
LGKQNP L+R IQEH +FL+LINEPV+G +G++ +P V+VTPEE+E IERLE
Sbjct: 78 LGKQNPQLLRSIQEHDQEFLQLINEPVDGSDGDMFDLADQEIPHTVSVTPEEQEVIERLE 137
Query: 368 AMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 402
AMGFDRALV+E F AC++NEELAANYLL+ ++E
Sbjct: 138 AMGFDRALVIEAFLACDRNEELAANYLLEQAGDYE 172
>gi|307211720|gb|EFN87721.1| UV excision repair protein RAD23-like protein A [Harpegnathos
saltator]
Length = 357
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 142/418 (33%), Positives = 204/418 (48%), Gaps = 90/418 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE+ V D+K+ IET +G PA QQ LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTIEIDSSQTVKDLKQKIETQKG---LPAEQQKLIYAGKILADEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K S++ ++ ++ +T ST + +P PTV
Sbjct: 58 EYNIDEKKFIVVMVTKPKTSATPKTS------DEQRTEGDNKEESTSSSVAQPSPNPTV- 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
Q +A A PA GQA S L+ G + V+ I
Sbjct: 111 --QDTSRAASTVQEQIAAAVPAAG---------------CGQAESALLMGEDYNTMVKNI 153
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP-AQ 239
+DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q P +PP AQ
Sbjct: 154 MDMG---YEREQVVQALRASFNNPDRAVEYLLTGIPAQLFEDP---------PEDPPEAQ 201
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 299
Q Q + L FLR QFQ +R ++Q NPQ
Sbjct: 202 EQLQ----------------------------DQSQDPLAFLRMQPQFQQMRQVIQQNPQ 233
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE---GGEGNVL-------------- 342
+L +LQ++G NP L++LI ++Q F+R++NEPVE G VL
Sbjct: 234 LLNNLLQQIGSTNPALLQLISQNQEAFVRMLNEPVEPTAGAGARVLPAGGVASAAASGGL 293
Query: 343 -----GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
A+ + +TP++R+AIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 294 TGSAGTGAAAGAGGLIQITPQDRDAIERLKALGFPEHLVVQAYFACEKNENLAANFLL 351
>gi|384493836|gb|EIE84327.1| UV excision repair protein Rad23 [Rhizopus delemar RA 99-880]
Length = 386
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 145/419 (34%), Positives = 216/419 (51%), Gaps = 53/419 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+++ VKTL+ F+++V D + VK+ I+ QG + +QQ LI GK+L D +E
Sbjct: 4 LQITVKTLQQKQFKLDVDSSDTILSVKEKIQESQG---HAVAQQKLIFSGKILVDDKKVE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E F+VVM+ K+K + + +S +++ + ++ + P T P A T
Sbjct: 61 DYNITEKDFLVVMVAKAKATPASSSAAASSASTPKESATQEKPAETAPKPAETAAAATTP 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ P S PP + PA PA S LV GS LE+ V+ +
Sbjct: 121 SNIASPASEPPASTPAAPTETTTTATPADT-------------FSQLVTGSQLESVVENM 167
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+ MG ++R RALRA++NNP+RAVEYL++GIPE + +A Q Q
Sbjct: 168 MSMG---FERAQCERALRASFNNPDRAVEYLFNGIPEHI----LNEMNAAQQ------QP 214
Query: 241 QAQQPAAPAPTSGPNANP----LDLFPQGLPNMGSNAGAG----------TLDFLRNSQQ 286
+ QQ + PNAN ++LF + +L RN+
Sbjct: 215 EVQQDTNTQSPTTPNANDANASMNLFAAAQQHAQQQQQQQQQEQNQNLNASLANFRNTPH 274
Query: 287 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA 346
FQ +R +VQ NP +LQP+LQ +G+ NP L+R I FL+ E EG EG +G
Sbjct: 275 FQQIRQLVQTNPALLQPLLQSIGQSNPELIRAINADPNAFLQAFLEGAEGEEG-AMG--- 330
Query: 347 SAMPQAVT--VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH-EFE 402
P+ T VTPEER+AI+RL A+GFD+A+ E +FAC+KNEELAANYL +H + +FE
Sbjct: 331 ---PETTTIQVTPEERDAIDRLAALGFDKAVAAEAYFACDKNEELAANYLFEHGYDDFE 386
>gi|148679012|gb|EDL10959.1| RAD23a homolog (S. cerevisiae), isoform CRA_a [Mus musculus]
Length = 379
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 146/429 (34%), Positives = 212/429 (49%), Gaps = 100/429 (23%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 81
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K PAP A P
Sbjct: 82 HIDEKNFVVVMVTKAKAGQG-------------------------------IPAPPEASP 110
Query: 123 QSVPE-SAP-PPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQ-----------------A 163
+VPE S P PP + P P +P S + + A
Sbjct: 111 TAVPEPSTPFPPVLASGMSHPPPTSREDKSPSEESTTTTSPESISGSVPSSGSSGREEDA 170
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 223
AS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 171 ASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------- 220
Query: 224 VARASAGGQAGNP-PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 282
G+P P Q+ AP + AG L+FLR
Sbjct: 221 ----------GSPEPEHGSVQESQAPE------------------QPATEAGENPLEFLR 252
Query: 283 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 336
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 253 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 312
Query: 337 GEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 394
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+L
Sbjct: 313 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 371
Query: 395 LDHMHEFED 403
L F+D
Sbjct: 372 LS--QNFDD 378
>gi|307189318|gb|EFN73749.1| UV excision repair protein RAD23-like protein B [Camponotus
floridanus]
Length = 363
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 143/432 (33%), Positives = 210/432 (48%), Gaps = 112/432 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE+ V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTIEIDSSQTVKDLKEKIETQKG---FPAEHQKLIYAGKILADEQPLT 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGAST---VSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
E + E F+VVM+TK K ++ ++ + + N+ ++TSSA +TQP++ P
Sbjct: 58 EYNIDEKKFIVVMVTKPKAGATPKTSEEQRAESTDNKEESTSSA---TTQPSSN-----P 109
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATV 177
TV Q ++A + P PA GQA S L+ G + V
Sbjct: 110 TV---QETLQAASNVQEQSAVPTPAA-----------------GQAESALLMGEDYNTMV 149
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-----AVPPVARASAGGQ 232
I+DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q PP A+ Q
Sbjct: 150 NNIMDMG---YEREQVVQALRASFNNPDRAVEYLLTGIPAQLFEDPPEDPPEAQEQLQDQ 206
Query: 233 AGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT 292
+ +P L FLR QFQ +R
Sbjct: 207 SQDP-----------------------------------------LAFLRMQPQFQQMRQ 225
Query: 293 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE---GGEGNVL------- 342
++Q NPQ+L +LQ++G NP L++LI ++Q F+R++NEPVE G VL
Sbjct: 226 VIQQNPQLLNNLLQQIGSTNPALLQLISQNQEAFVRMLNEPVEPATGAGARVLPTSGGGV 285
Query: 343 -------------------GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 383
G A + +TP++R+AIERL+A+GF LV++ +FAC
Sbjct: 286 ASATAAAAAGGAVNGGAGTGAAAGVGSGTIQITPQDRDAIERLKALGFPEHLVVQAYFAC 345
Query: 384 NKNEELAANYLL 395
KNE LAAN+LL
Sbjct: 346 EKNENLAANFLL 357
>gi|34447211|ref|NP_033036.2| UV excision repair protein RAD23 homolog A [Mus musculus]
gi|26332489|dbj|BAC29962.1| unnamed protein product [Mus musculus]
gi|187952977|gb|AAI38685.1| Rad23a protein [Mus musculus]
Length = 362
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 144/410 (35%), Positives = 214/410 (52%), Gaps = 62/410 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K + A+P T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASP-----TAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILD 182
S + +P + + + + + S D AAS LV GS E + +I+
Sbjct: 117 TSREDKSPSEESTTTTSPESISGSVPSSGSSGREED----AASTLVTGSEYETMLTEIMS 172
Query: 183 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP-PAQTQ 241
MG ++RE V+ ALRA+YNNP RAVEYL +GIP G+P P
Sbjct: 173 MG---YERERVVAALRASYNNPHRAVEYLLTGIP-----------------GSPEPEHGS 212
Query: 242 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQIL 301
Q+ AP + AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 213 VQESQAPE------------------QPATEAGENPLEFLRDQPQFQNMRQVIQQNPALL 254
Query: 302 QPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--V 353
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ +
Sbjct: 255 PALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYI 313
Query: 354 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 314 QVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 361
>gi|341941880|sp|P54726.2|RD23A_MOUSE RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=mHR23A
gi|148679013|gb|EDL10960.1| RAD23a homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|219519380|gb|AAI45373.1| Rad23a protein [Mus musculus]
Length = 363
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 144/409 (35%), Positives = 214/409 (52%), Gaps = 59/409 (14%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K + A+P T P T P S P PP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQGIPAPPEASP-----TAVPEPSTPFPPVLASGMSHP---PP 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILD 182
S + +P + + + + + S D AAS LV GS E + +I+
Sbjct: 117 TSREDKSPSEESTTTTSPESISGSVPSSGSSGREED----AASTLVTGSEYETMLTEIMS 172
Query: 183 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 242
MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 173 MG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQAP 219
Query: 243 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 302
+QPA A AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 220 EQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLP 256
Query: 303 PMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VT 354
+LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ +
Sbjct: 257 ALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQ 315
Query: 355 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 316 VTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 362
>gi|297703760|ref|XP_002828804.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pongo
abelii]
Length = 485
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 149/395 (37%), Positives = 213/395 (53%), Gaps = 72/395 (18%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K +
Sbjct: 148 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK---A 204
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAA---PAPAP 139
G T SA P A PT+ ++TS PAPT S PPPAA +P+
Sbjct: 205 GQGT-SAPP--------EASPTAAPESSTSFLPAPTSG------MSHPPPAAREDKSPSE 249
Query: 140 APAPAPAPAPAPVSSSVSDVYGQ---AASNLVAGSNLEATVQQILDMGGGSWDRETVIRA 196
AP +P S S G+ AAS LV GS E + +I+ MG ++RE V+ A
Sbjct: 250 ESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAA 306
Query: 197 LRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNA 256
LRA+YNNP RAVEYL +GIP S + G+ ++QPA
Sbjct: 307 LRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPA---------- 346
Query: 257 NPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLM 316
+ AG L+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L+
Sbjct: 347 --------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLL 392
Query: 317 RLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEA 368
+ I HQ F++++NEP + EG V G + PQ + VTP+E+EAIERL+A
Sbjct: 393 QQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKA 451
Query: 369 MGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 452 LGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 484
>gi|332853400|ref|XP_003316200.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pan
troglodytes]
Length = 463
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 149/395 (37%), Positives = 213/395 (53%), Gaps = 72/395 (18%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K +
Sbjct: 126 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK---A 182
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAA---PAPAP 139
G T SA P A PT+ ++TS PAPT S PPPAA +P+
Sbjct: 183 GQGT-SAPP--------EASPTAAPESSTSFPPAPTSG------MSHPPPAAREDKSPSE 227
Query: 140 APAPAPAPAPAPVSSSVSDVYGQ---AASNLVAGSNLEATVQQILDMGGGSWDRETVIRA 196
AP +P S S G+ AAS LV GS E + +I+ MG ++RE V+ A
Sbjct: 228 ESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAA 284
Query: 197 LRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNA 256
LRA+YNNP RAVEYL +GIP S + G+ ++QPA
Sbjct: 285 LRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPA---------- 324
Query: 257 NPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLM 316
+ AG L+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L+
Sbjct: 325 --------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLL 370
Query: 317 RLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEA 368
+ I HQ F++++NEP + EG V G + PQ + VTP+E+EAIERL+A
Sbjct: 371 QQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKA 429
Query: 369 MGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 430 LGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 462
>gi|355768543|gb|EHH62732.1| UV excision repair protein RAD23-like protein A, partial [Macaca
fascicularis]
Length = 339
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 206/389 (52%), Gaps = 59/389 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K
Sbjct: 1 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQG 60
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
++ A+P ++++S PP PT+ P P E P AP +P
Sbjct: 61 TSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAAR------EDKSPSEESAPTTSPE 111
Query: 143 PAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYN 202
P+ SS + AAS LV GS E + +I+ MG ++RE V+ ALRA+YN
Sbjct: 112 SVSGSVPSSGSSGREE---DAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYN 165
Query: 203 NPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLF 262
NP RAVEYL +GIP S + G+ ++QPA A
Sbjct: 166 NPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPATEA------------- 202
Query: 263 PQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 322
AG L+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I H
Sbjct: 203 ----------AGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRH 252
Query: 323 QTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRA 374
Q F++++NEP + EG V G + PQ + VTP+E+EAIERL+A+GF +
Sbjct: 253 QEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPES 311
Query: 375 LVLEVFFACNKNEELAANYLLDHMHEFED 403
LV++ +FAC KNE LAAN+LL F+D
Sbjct: 312 LVIQAYFACEKNENLAANFLLS--QNFDD 338
>gi|283945482|ref|NP_001164652.1| nuclear excision repair protein rad23 [Bombyx mori]
gi|217331039|gb|ACK38234.1| nuclear excision repair protein Rad23 [Bombyx mori]
Length = 324
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 136/413 (32%), Positives = 200/413 (48%), Gaps = 99/413 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+IE+ PE+ V +K IE +G D + A Q LI+ GK+L D +
Sbjct: 1 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKD-FVADHQRLIYAGKILLDDNKIN 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V+M+TK KVS S Q TS++ P + + +T A
Sbjct: 60 SYNIDEKKFIVIMVTKPKVSES-------------QPTSTSIPEAGESASTDSGDAK--- 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P++ PP P A P N + + LEAT+Q I
Sbjct: 104 -----PKTVPPEEVVKPTTAETERVTETP----------------NTTSDAELEATIQSI 142
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+DMG +DR V +ALRA++NN ERAVEYL +GIPE+
Sbjct: 143 MDMG---YDRPQVEQALRASFNNRERAVEYLITGIPEELL-------------------- 179
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+Q A + P L FLR+ QFQ +R ++Q NP +
Sbjct: 180 -HEQEAEESSDEDP-----------------------LAFLRDQPQFQQMRAVIQQNPNL 215
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE------GGEGNVLG----QLASAMP 350
L +LQ++G+ NP L+++I +HQ F+R++NEPV + NV QL S
Sbjct: 216 LNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASDENVADIQQPQLGSQ-- 273
Query: 351 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+ V+ +++EAIERL+A+GF +V++ +FAC KNE LAAN+LL F+D
Sbjct: 274 NVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLS--QNFDD 324
>gi|383420441|gb|AFH33434.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 372
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 150/396 (37%), Positives = 212/396 (53%), Gaps = 55/396 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
E K+ E +FVVVM+TK K S+ A+T +APA+ TSS T Q T APT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPVS------------SSVSDVYGQA 163
P P SA + PAPA A PA PA PV+ SS S+++ A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTA 220
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E A
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 221 V--PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 278
V PP A ++ Q+ A +SG G P L
Sbjct: 238 VVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------L 276
Query: 279 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 338
+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 277 EFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAG 336
Query: 339 GNVLGQLASAMPQA---------VTVTPEEREAIER 365
G G + A + VTP+E+EAIER
Sbjct: 337 GQGGGGGGGSGGIAEPGNGPMNYIQVTPQEKEAIER 372
>gi|213402873|ref|XP_002172209.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
gi|212000256|gb|EEB05916.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
Length = 373
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 148/407 (36%), Positives = 217/407 (53%), Gaps = 47/407 (11%)
Query: 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
M++ K L+ F + +V P+ V +VK+ I+ QG Y +Q LI+ G++L D T+
Sbjct: 1 MQLTFKNLQQQKFVVPDVDPKTTVLEVKQKIKEQQG---YEVERQKLIYSGRILADDKTV 57
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
EE + E F+V M+ S+ +S T + TT S P +T +T+ +TPAP
Sbjct: 58 EEYDIKEKDFIVCMV--SRAPASKVKTEQKTEEKKQSTTESTPLNTT--STSPKTPAP-- 111
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
+SVPE P A A A + V D S+LV G+ A +
Sbjct: 112 ---ESVPEQTQPAAVAAAPTA------------APIVGD------SSLVLGAQRNAVIDN 150
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
+++MG ++R V A+RAA+NNP+RAVEYL +GIPE +A A
Sbjct: 151 MVEMG---YERSQVELAMRAAFNNPDRAVEYLLNGIPESVRQAQEQEQAAAAAAATAATN 207
Query: 240 TQAQQ-PAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT-----LDFLRNSQQFQALRTM 293
A AAPA ++ P A P +LF Q + +G L FLR QFQ LR +
Sbjct: 208 ATAASGNAAPANSTQPAA-PGNLFEQAAAHAQGEEESGASGEDPLGFLRELPQFQQLRQI 266
Query: 294 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAV 353
VQ NPQ+L+ +LQ++G+ NP L ++I ++ FL+L+ E V+G G L Q +
Sbjct: 267 VQQNPQMLEGILQQIGESNPALAQIISQNPEAFLQLLAEGVDGE-----GVLPPGTIQ-I 320
Query: 354 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
+TPEE ++IERL +GFDR +V++ + AC+KNEELAANYL +H HE
Sbjct: 321 EITPEENQSIERLCQLGFDRNIVIQAYLACDKNEELAANYLFEHGHE 367
>gi|281353038|gb|EFB28622.1| hypothetical protein PANDA_009870 [Ailuropoda melanoleuca]
Length = 339
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 206/389 (52%), Gaps = 59/389 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K S
Sbjct: 1 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPG 60
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
+ A+P ++++S PP P + P PT +S E + P +P
Sbjct: 61 TSVPPEASPTAAPESSTSFPPA---PASGMSHPPPTAREDKSPSEESVPTTSPESVSGSV 117
Query: 143 PAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYN 202
SS S AAS LV GS E + +I+ MG ++RE V+ ALRA+YN
Sbjct: 118 ---------PSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYN 165
Query: 203 NPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLF 262
NP RAVEYL +GIP S + G+ ++QPA T G NPL+
Sbjct: 166 NPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPA----TEGAGENPLE-- 209
Query: 263 PQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 322
FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I H
Sbjct: 210 -----------------FLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRH 252
Query: 323 QTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRA 374
Q F++++NEP + EG V G + PQ + VTP+E+EAIERL+A+GF +
Sbjct: 253 QEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPES 311
Query: 375 LVLEVFFACNKNEELAANYLLDHMHEFED 403
LV++ +FAC KNE LAAN+LL F+D
Sbjct: 312 LVIQAYFACEKNENLAANFLLS--QNFDD 338
>gi|194332576|ref|NP_001123777.1| uncharacterized protein LOC100170527 [Xenopus (Silurana)
tropicalis]
gi|156914684|gb|AAI52591.1| Zgc:123349 [Danio rerio]
gi|189441745|gb|AAI67540.1| LOC100170527 protein [Xenopus (Silurana) tropicalis]
Length = 404
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 161/433 (37%), Positives = 231/433 (53%), Gaps = 61/433 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F++++ E V +K+ IE +G D +PA Q LI+ GK+L D L+
Sbjct: 2 LTITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPLK 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGAST----VSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
E K+ E +FVVVM+TK K ++S + VS P +Q TT APP ++ T+ PA
Sbjct: 62 EYKIDEKNFVVVMVTKPKSAASPQTPTPVPVSETPTHQP-TTPVAPPNASIVPETTPDPA 120
Query: 117 PTVAPPQSV-----PESAPPPAAPAPAPAPAPAPAPAPAPV----------------SSS 155
P V P SV P +APP A+ P A PAPV +S
Sbjct: 121 P-VEPAASVEPIDPPITAPPAASEDTVETTEPVSA-TPAPVVEEEIQGQEEQAIAQSEAS 178
Query: 156 VSD---VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 212
++D + AAS LV G E V +I+ MG ++RE VI ALRA++NNP+RAVEYL
Sbjct: 179 LTDELSLLEAAASILVTGQAYENLVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLL 235
Query: 213 SGIPEQTAVPP--VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMG 270
+GIP ++ PP V R + P Q PAA SG G
Sbjct: 236 TGIPAESEQPPQEVVRPTPSSNPTPPAPQRAQPPPAAAGAESG----------------G 279
Query: 271 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 330
+ A A L+FLR+ QFQ +R ++Q NP +L + Q+LG+ NP L++ I +HQ F++++
Sbjct: 280 AQASANPLEFLRHQPQFQQMRQIIQQNPSLLPALQQQLGRDNPQLLQQITQHQERFVQML 339
Query: 331 NEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 390
N A+ + VTP+E+EAIERL+A+GF LV++ +FAC KNE LA
Sbjct: 340 N-------EPEAEAPAAPQTNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLA 392
Query: 391 ANYLLDHMHEFED 403
AN+LL F+D
Sbjct: 393 ANFLLQ--QNFDD 403
>gi|340374755|ref|XP_003385903.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 409
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 149/408 (36%), Positives = 221/408 (54%), Gaps = 36/408 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTL+ F+IE++ V D+KK IE QG + +PA+ Q LI+ GK+L D L
Sbjct: 1 MIITVKTLQQKTFKIEIEESASVLDLKKAIEANQG-EAFPAAGQKLIYSGKILNDSQPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E++FVVVM++K K + + + + +T S + QP++++ P T A
Sbjct: 60 DYSIQESNFVVVMVSKIKPAPAPTPKPQETSSTSSSSTPSTSGATPQPSSSATAPTTTSA 119
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P + + A ++S S + QA S LV G++ E TV +
Sbjct: 120 PSGTTGTESTDGGAGG-----------GQTSSTASSSSEFDQALSTLVTGTDYERTVNDM 168
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASAGGQ---- 232
+ MG + R V+RAL+A+YNNP RA+EYL P E+ A P + AGGQ
Sbjct: 169 VGMG---FMRNDVVRALQASYNNPTRAMEYLCGERPMPTLEEEAEPQPRGSGAGGQQVPL 225
Query: 233 AGNPPAQTQAQQPAAPAPTSGP-NANPLDLFPQG-LPNMGSNAGAGTLDFLRNSQQFQAL 290
+PP Q+PA + S P +A P PQG L G + + L L QFQAL
Sbjct: 226 TSSPPQAPPTQRPAGQSQQSTPPSAAPRP--PQGGLSAGGGQSASNVLQGLSQLPQFQAL 283
Query: 291 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-GEGNVL--GQLAS 347
R VQ NP +L +LQE+G+ NP L++LI ++Q +F+ L+N+P + G G L G +
Sbjct: 284 RAAVQQNPGLLPSLLQEIGQHNPELLQLINQNQQEFVDLLNQPPQPIGSGQELPPGTV-- 341
Query: 348 AMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
++ VT EEREAI+RL+A+GF V++ + AC+KNE LAAN LL
Sbjct: 342 ----SIQVTQEEREAIDRLKALGFPEGEVIQAYLACDKNETLAANLLL 385
>gi|340716521|ref|XP_003396746.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Bombus terrestris]
Length = 348
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 138/406 (33%), Positives = 202/406 (49%), Gaps = 75/406 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + + SS + QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ A P A + A S++ V GQA S L+ G + V I
Sbjct: 112 ------QGASNPTNTAQEQSEA----------STTAGCVGGQAESALLMGEDYNTMVNNI 155
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q
Sbjct: 156 VDMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQL 200
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+AQ+ + G L FLR QFQ +R ++Q NPQ+
Sbjct: 201 EAQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQL 236
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE-----------GGEGNVLGQLASAM 349
L +LQ++G+ NP L++LI ++Q F+R++NEP GG G +G +
Sbjct: 237 LNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPANVTPPTAPGGISGGLGAGIGAGSDVE 296
Query: 350 PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ VTP+++EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 297 ASVIQVTPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAANFLL 342
>gi|340716519|ref|XP_003396745.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Bombus terrestris]
Length = 364
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 139/422 (32%), Positives = 203/422 (48%), Gaps = 91/422 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + + SS + QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ A P A + A S++ V GQA S L+ G + V I
Sbjct: 112 ------QGASNPTNTAQEQSEA----------STTAGCVGGQAESALLMGEDYNTMVNNI 155
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q
Sbjct: 156 VDMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQL 200
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+AQ+ + G L FLR QFQ +R ++Q NPQ+
Sbjct: 201 EAQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQL 236
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-----------GEGNV-------- 341
L +LQ++G+ NP L++LI ++Q F+R++NEPVE NV
Sbjct: 237 LNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPVETTGGTGGRTTPVSAANVTPPTAPGG 296
Query: 342 --------LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 393
+G + + VTP+++EAIERL+A+GF LV++ +FAC KNE LAAN+
Sbjct: 297 ISGGLGAGIGAGSDVEASVIQVTPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAANF 356
Query: 394 LL 395
LL
Sbjct: 357 LL 358
>gi|340716525|ref|XP_003396748.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
4 [Bombus terrestris]
Length = 357
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 138/417 (33%), Positives = 201/417 (48%), Gaps = 88/417 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K + + + SS + QP++ PTV
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSN-----PTV- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ A P A + A S++ V GQA S L+ G + V I
Sbjct: 112 ------QGASNPTNTAQEQSEA----------STTAGCVGGQAESALLMGEDYNTMVNNI 155
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P Q
Sbjct: 156 VDMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLPEDQL 200
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+AQ+ + G L FLR QFQ +R ++Q NPQ+
Sbjct: 201 EAQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQNPQL 236
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA-------- 352
L +LQ++G+ NP L++LI ++Q F+R++NEP GG + P A
Sbjct: 237 LNAVLQQIGQTNPALLQLISQNQEAFVRMLNEP--GGRTTPVSAANVTPPTAPGGISGGL 294
Query: 353 --------------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ VTP+++EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 295 GAGIGAGSDVEASVIQVTPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAANFLL 351
>gi|301771238|ref|XP_002921030.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ailuropoda melanoleuca]
Length = 375
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 138/389 (35%), Positives = 204/389 (52%), Gaps = 60/389 (15%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K S
Sbjct: 38 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPG 97
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
+ A+P ++++S PP P + P PT +S E + P +P
Sbjct: 98 TSVPPEASPTAAPESSTSFPPA---PASGMSHPPPTAREDKSPSEESVPTTSPESVSGSV 154
Query: 143 PAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYN 202
SS S AAS LV GS E + +I+ MG ++RE V+ ALRA+YN
Sbjct: 155 ---------PSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYN 202
Query: 203 NPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLF 262
NP RAVEYL +GIP S + G+ ++QPA
Sbjct: 203 NPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPA---------------- 236
Query: 263 PQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH 322
+ G L+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I H
Sbjct: 237 --------TEGGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRH 288
Query: 323 QTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRA 374
Q F++++NEP + EG V G + PQ + VTP+E+EAIERL+A+GF +
Sbjct: 289 QEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPES 347
Query: 375 LVLEVFFACNKNEELAANYLLDHMHEFED 403
LV++ +FAC KNE LAAN+LL F+D
Sbjct: 348 LVIQAYFACEKNENLAANFLLS--QNFDD 374
>gi|395513058|ref|XP_003760747.1| PREDICTED: UV excision repair protein RAD23 homolog A [Sarcophilus
harrisii]
Length = 404
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 148/397 (37%), Positives = 214/397 (53%), Gaps = 70/397 (17%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+V +K+ IE +G D +P S Q LI+ GK+L D + + K+ E +FVVVM+TK+K
Sbjct: 62 QVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDYKIDEKNFVVVMVTKAK--- 118
Query: 82 SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAP 141
A ++AP+ + ++ A + +P+T + VA P PP AP+ P
Sbjct: 119 --AGLATSAPS---EPSAPAAANTLEPSTPTPPAPAIVAMPL-------PPPAPSEEQKP 166
Query: 142 APAPAPAPAPVSSSVSDVY-------GQAASNLVAGSNLEATVQQILDMGGGSWDRETVI 194
A PA P + S S AAS LV GS E + +I+ MG ++RE V+
Sbjct: 167 AEEPAAGTPPEAGSGSLPSSGSSGQEDDAASTLVTGSEYETMLTEIMSMG---YERERVV 223
Query: 195 RALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGP 254
ALRA+YNNP RAVEYL +GIP S ++G P Q ++Q P PAP G
Sbjct: 224 AALRASYNNPHRAVEYLLTGIP----------GSPEPESG--PVQ-ESQAPEQPAPEGGE 270
Query: 255 NANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPH 314
N L+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP
Sbjct: 271 N---------------------PLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQ 309
Query: 315 LMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERL 366
L++ I HQ F++++NEP + EG V G + PQ + VTP+E+EAIERL
Sbjct: 310 LLQQISRHQEQFIQMLNEPTGELADMSDVEGEV-GAIGEESPQMNYIQVTPQEKEAIERL 368
Query: 367 EAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 369 KALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 403
>gi|217070100|gb|ACJ83410.1| unknown [Medicago truncatula]
gi|388522857|gb|AFK49490.1| unknown [Medicago truncatula]
Length = 142
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 94/143 (65%), Positives = 117/143 (81%), Gaps = 1/143 (0%)
Query: 261 LFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 320
+FPQ + G+ AGAG+LDFLRN+ QFQALRTMVQ+NPQILQP+LQELGKQNP L+RLI
Sbjct: 1 MFPQETIS-GAGAGAGSLDFLRNNPQFQALRTMVQSNPQILQPVLQELGKQNPGLLRLID 59
Query: 321 EHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVF 380
EH ++FL+LINEP++G EG+ Q MP AV VTP E+EAI RLEAMGFDRA V+E F
Sbjct: 60 EHHSEFLQLINEPMDGTEGDNFDQAEQDMPHAVNVTPAEQEAIGRLEAMGFDRASVIEAF 119
Query: 381 FACNKNEELAANYLLDHMHEFED 403
AC+++E+LAANYLL++ +FED
Sbjct: 120 LACDRDEQLAANYLLENAGDFED 142
>gi|156362373|ref|XP_001625753.1| predicted protein [Nematostella vectensis]
gi|156212600|gb|EDO33653.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 137/407 (33%), Positives = 205/407 (50%), Gaps = 58/407 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + KTL+ F++E+ ++ V +K+ IE +G D YP LI+ GK+L D L+
Sbjct: 1 MIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDNPLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E SFVV+M+ K K + + A + Q +++P STQ ++T+Q
Sbjct: 61 EYNIDEKSFVVIMVAKPKPAPA-AVAPAPVTTTIPQAATASP--STQASSTAQE------ 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
S PE+ P A A A A P +S+ +A S L G+ E V +I
Sbjct: 112 --DSKPEAKPDEAKSTSTETAASATTTASTPAASTPRSYIEEAESALATGTEYEGLVTEI 169
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
++MG ++R+ V+RAL+A++NNP+RAVEYL +GIP+ +P GGQ
Sbjct: 170 MNMG---FERDQVVRALQASFNNPDRAVEYLTTGIPD---LPSERVGDQGGQDEGEEETA 223
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+L+FLR QF +R MVQ NP +
Sbjct: 224 AEG-------------------------------VSSLEFLRTQPQFITMRRMVQQNPGV 252
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE------GGEGNVLGQLASAMP---- 350
L +LQ +G+ NP L++LI HQ +F+R++NEP + GGEG P
Sbjct: 253 LPQLLQSMGQSNPSLLQLISSHQDEFIRMLNEPDDGPQPAAGGEGGQQSVPGEGAPPPGV 312
Query: 351 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
+ +TP E+EAIERL+ +GF LV++ +FAC KNE LAAN+LL+
Sbjct: 313 SYIQITPVEKEAIERLKQLGFPEPLVIQAYFACEKNENLAANFLLNQ 359
>gi|432885045|ref|XP_004074630.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Oryzias
latipes]
Length = 395
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 144/425 (33%), Positives = 218/425 (51%), Gaps = 53/425 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+I++ E+ V +K+ IE +G + + + Q LI+ GK+L D T L+
Sbjct: 1 MLITLKTLQQQTFKIDIDEEETVKTLKERIEQEKGKESFSVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E +FVVVM+TK K ++ + SA+ + + SSA + + VA
Sbjct: 61 EYKIDEKNFVVVMVTKPKTAAPSPKSSSASSSAPSSAPSSAAAAAAPTPPSVADKPAEVA 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P + E + P P P PA S S +D+ +A S LV GS+ + V ++
Sbjct: 121 PADKLEEKE--------SSTAEPPPPPPPARSSESSTDLLSEAVSTLVTGSSYDTMVNEM 172
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP-AQ 239
+ MG ++RE V+ ALRA+YNNP+RAVEYL SGIP Q + S G P ++
Sbjct: 173 MLMG---YEREQVVAALRASYNNPDRAVEYLLSGIPGQD------QGSRTGPDSTPAVSE 223
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 299
+ A A + ++P S G L FLRN QF +R ++Q N
Sbjct: 224 SPAAPAGGTAAPTSTESSP------------SAGGGNPLGFLRNQPQFHVMRQLIQQNAA 271
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP---------------------VEGGE 338
+L +LQE+G++NP L++ I HQ F++++NEP G
Sbjct: 272 LLPALLQEIGRENPELLQEISNHQEQFIQMLNEPNPDPVPGGGGGGGGGGGGGGGARGAG 331
Query: 339 GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 398
G + + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 332 GTGADTSGESQMSYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL--Q 389
Query: 399 HEFED 403
F+D
Sbjct: 390 QNFDD 394
>gi|440902080|gb|ELR52923.1| UV excision repair protein RAD23-like protein A [Bos grunniens
mutus]
Length = 391
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 145/420 (34%), Positives = 222/420 (52%), Gaps = 53/420 (12%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAP---ANQAQTT-SSAPPTSTQPTTTSQTPAPT 118
++ E +F V + + AP +QA+T+ ++ P+ PT T ++
Sbjct: 65 RIDEKNF-------VVVMVTKVGVLMPAPFFWVSQAKTSPGTSVPSEASPTATPESSTSF 117
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYG-----QAASNLVAGSNL 173
+ P S PP A +P+ AP +P VS SV AAS LV GS
Sbjct: 118 PSAPASGMSHPPPTAREDKSPSEESAPTTSPESVSGSVPSSGSGGREEDAASTLVTGSEY 177
Query: 174 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 233
E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL + E P GG+
Sbjct: 178 ETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTVRKELLQEP-------GGER 227
Query: 234 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT--LDFLRNSQQFQALR 291
P + + + P +PA G+ G G L+FLR+ QFQ +R
Sbjct: 228 WGGPGRAERRPPVSPARAEYAG--------------GAAVGTGENPLEFLRDQPQFQNMR 273
Query: 292 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQL 345
++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G +
Sbjct: 274 QVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEV-GAI 332
Query: 346 ASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 333 GEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 390
>gi|19113023|ref|NP_596231.1| UV excision repair protein rhp23 [Schizosaccharomyces pombe 972h-]
gi|21542214|sp|O74803.1|RHP23_SCHPO RecName: Full=UV excision repair protein rhp23; AltName: Full=RAD23
homolog
gi|5805388|gb|AAD51975.1|AF174293_1 Rhp23 [Schizosaccharomyces pombe]
gi|3687502|emb|CAA21170.1| Rad23 homolog Rhp23 [Schizosaccharomyces pombe]
Length = 368
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 141/414 (34%), Positives = 214/414 (51%), Gaps = 59/414 (14%)
Query: 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
M + K L+ F I +V + K+S++K+ I+T Q Y +Q LI+ G++L D T+
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQN---YEVERQKLIYSGRILADDKTV 57
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + E F+V M+++ K S+S + ++ N + P + P+ TV
Sbjct: 58 GEYNIKEQDFIVCMVSRPKTSTSTPKSAASPAPNPPASV---------PEKKVEAPSSTV 108
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
A S ++ A AP+ A + AP+ A+ L G+ V+
Sbjct: 109 AESTSTTQTVA-----AAAPSNPDTTATSEAPID----------ANTLAVGAQRNVAVEN 153
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
+++MG ++R V RA+RAA+NNP+RAVEYL +GIPE + +
Sbjct: 154 MVEMG---YERSEVERAMRAAFNNPDRAVEYLLTGIPEDIL-------NRQREESAAALA 203
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN-------AGAGTLDFLRNSQQFQALRT 292
Q QQ A APTS P +LF Q + N G L FLR+ QFQ LR
Sbjct: 204 AQQQQSEALAPTS--TGQPANLFEQAALSENENQEQPSNTVGDDPLGFLRSIPQFQQLRQ 261
Query: 293 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA 352
+VQ NPQ+L+ +LQ++G+ +P L + I ++ FL+L+ EG EG SA+P
Sbjct: 262 IVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQLL---AEGAEGE------SALPSG 312
Query: 353 ---VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+ +T EE E+I+RL +GFDR +V++ + AC+KNEELAANYL +H HE ED
Sbjct: 313 GIQIQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEELAANYLFEHGHESED 366
>gi|354479499|ref|XP_003501947.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Cricetulus griseus]
Length = 375
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 209/396 (52%), Gaps = 71/396 (17%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+V +K+ IE +G D +P + Q LI+ GK+L D ++E + E +FVVVM+TK+K
Sbjct: 36 EVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILNDDVPIKEYHIDEKNFVVVMVTKAKAGQ 95
Query: 82 SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAA---PAPA 138
S + +P +A P S+ P PAPT S PPPA+ +P+
Sbjct: 96 STPAPPEVSP--------TAAPESSTPFP----PAPTSG------MSHPPPASREDKSPS 137
Query: 139 PAPAPAPAPAPAPVSSSVSDVYGQ---AASNLVAGSNLEATVQQILDMGGGSWDRETVIR 195
A A +P S S G+ AAS LV GS E + +I+ MG ++RE V+
Sbjct: 138 EESATATSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVA 194
Query: 196 ALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPN 255
ALRA+YNNP RAVEYL +GIP S + G+ +QPA A
Sbjct: 195 ALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVPEQPAVEA------ 238
Query: 256 ANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHL 315
AG L+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L
Sbjct: 239 -----------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQL 281
Query: 316 MRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLE 367
++ I HQ F++++NEP + EG V G + PQ + VTP+E+EAIERL+
Sbjct: 282 LQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLK 340
Query: 368 AMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 341 ALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 374
>gi|194698296|gb|ACF83232.1| unknown [Zea mays]
gi|413926353|gb|AFW66285.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 185
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/214 (50%), Positives = 133/214 (62%), Gaps = 30/214 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGTHFEI V+P D + VKKNIE +QG D YP QQ+LI GKVLKD +TLE
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKV E+ F+VVML+K K S S ++ S S TPA A
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQH---------------------SNTPATRQA 99
Query: 121 PPQSVPESAP-PPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
PP P+ AP PP AP P PA AP + + AASNL++G N++ + Q
Sbjct: 100 PPLEAPQQAPQPPVAPITTSQPEGLPAQAP--------NTHDNAASNLLSGRNVDTIINQ 151
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 213
+++MGGGSWD++ V RALRAAYNNPERAVEYLYS
Sbjct: 152 LMEMGGGSWDKDKVQRALRAAYNNPERAVEYLYS 185
>gi|380027731|ref|XP_003697572.1| PREDICTED: LOW QUALITY PROTEIN: UV excision repair protein RAD23
homolog B-like [Apis florea]
Length = 364
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 139/426 (32%), Positives = 202/426 (47%), Gaps = 99/426 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVRDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGAST----VSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
E + E F+VVM+TK K + +T SA ++ TTS S+ PT +
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTTDEEHTSADNKEESSTTSLVAQPSSNPTVQGASSP 117
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEAT 176
+ QS S++ V GQA L+ G +
Sbjct: 118 GNIIQEQS--------------------------EASTTAGCVGGQAEXALLMGEDYNTM 151
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
V I+DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P
Sbjct: 152 VNNIVDMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLP 196
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
Q +AQ+ + G L FLR QFQ +R ++Q
Sbjct: 197 EDQLEAQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQ 232
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE--------------------- 335
NPQ+L +LQ++G+ NP L++LI ++Q F+R++NEPVE
Sbjct: 233 NPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPVETTGGTGGRTTPVSASTVTPAT 292
Query: 336 ------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389
GG G +G + + VTP+++EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 293 APGGISGGLGAGIGTGSDVETSVIQVTPQDKEAIERLKALGFPEHLVVQAYFACEKNENL 352
Query: 390 AANYLL 395
AAN+LL
Sbjct: 353 AANFLL 358
>gi|357621015|gb|EHJ73001.1| nuclear excision repair protein rad23 [Danaus plexippus]
Length = 323
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 138/410 (33%), Positives = 204/410 (49%), Gaps = 94/410 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE+ P++ V +K IE +G D Y A Q LI+ GK+L D L
Sbjct: 1 MLLTLKTLQQQTFQIEIDPQETVKALKLKIEVEKGKD-YAADNQRLIYAGKILLDDNKLH 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V+M+TK K S NQ +++SAP +T S V
Sbjct: 60 TYNIDEKKFIVIMVTKPKTSD-----------NQQASSTSAPEAGESASTESGDGKSKVV 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ P P PA P A P PV+S+ D E+TVQ I
Sbjct: 109 EEK-----------PKPQPAAEPERASEP-PVTSNEPD--------------FESTVQSI 142
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+DMG ++R+ V +ALRA++NN ERAVEYL +GIPE+ A SA
Sbjct: 143 MDMG---YNRQQVEQALRASFNNRERAVEYLITGIPEELLQEQEAEESA----------- 188
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+ +PL FLR+ QFQ +R ++Q NP +
Sbjct: 189 --------------DEDPLG-------------------FLRDQPQFQQMRAVIQQNPNL 215
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA---SAMPQ----AV 353
L +LQ++G+ NP L++ I +HQ F+R++NEPV + + A + +PQ +
Sbjct: 216 LNTVLQQIGQTNPALLQAISQHQQAFVRMLNEPVNPSAAGAVAEEAVPDNPVPQQPQNVI 275
Query: 354 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
V+P+++EAIERL+A+GF +V++ +FAC KNE LAAN+LL F+D
Sbjct: 276 QVSPQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLS--QNFDD 323
>gi|328788815|ref|XP_623093.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Apis mellifera]
Length = 364
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 139/426 (32%), Positives = 202/426 (47%), Gaps = 99/426 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IE +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVRDLKQKIEIQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGAST----VSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
E + E F+VVM+TK K + +T SA ++ TTS S+ PT +
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTTDEEHTSADNKEESSTTSLVAQPSSNPTVQGASSP 117
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEAT 176
+ QS S++ V GQA S L+ G +
Sbjct: 118 GNIIQEQS--------------------------EASTTAGCVGGQAESALLMGEDYNTM 151
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
V I+DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q P
Sbjct: 152 VNNIVDMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDLP 196
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
Q +AQ+ + G L FLR QFQ +R ++Q
Sbjct: 197 EDQLEAQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQQ 232
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE--------------------- 335
NPQ+L +LQ++G+ NP L++LI ++Q F+R++NEPVE
Sbjct: 233 NPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPVETTGGTGGRTTPVSASTVTPAT 292
Query: 336 ------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389
GG G +G + + VTP+++EAIERL+A+GF LV++ +FAC KNE L
Sbjct: 293 APGGISGGLGAGIGTGSDVETSVIQVTPQDKEAIERLKALGFPEHLVVQAYFACEKNENL 352
Query: 390 AANYLL 395
AAN+LL
Sbjct: 353 AANFLL 358
>gi|350404552|ref|XP_003487142.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Bombus
impatiens]
Length = 365
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 139/427 (32%), Positives = 203/427 (47%), Gaps = 100/427 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F +E+ P V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPA-----NQAQTTSSAPPTSTQPTTTSQTP 115
E + E F+VVM+TK K + +T ++ TTSS S+ PT +
Sbjct: 58 EYNIDEKKFIVVMVTKLKTGNGHTTTEEEHTTNTDNKEESSTTSSVAQPSSNPTVQGAS- 116
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEA 175
P +V E + S++ V GQA S L+ G +
Sbjct: 117 ----NPTNTVQEQSE---------------------ASTTAGCVGGQAESALLMGEDYNT 151
Query: 176 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 235
V I+DMG ++RE V +ALRA++NNP+RAVEYL +GIP Q
Sbjct: 152 MVNNIVDMG---YEREQVEQALRASFNNPDRAVEYLLTGIPAQLF------------EDL 196
Query: 236 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 295
P Q +AQ+ + G L FLR QFQ +R ++Q
Sbjct: 197 PEDQLEAQEQL------------------------QDHGQHPLAFLRMQPQFQQMRQVIQ 232
Query: 296 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-----------GEGNV--- 341
NPQ+L +LQ++G+ NP L++LI ++Q F+R++NEPVE NV
Sbjct: 233 QNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPVETTGGTGGRTTPVSAANVTPP 292
Query: 342 -------------LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 388
+G + + VTP+++EAIERL+A+GF LV++ +FAC KNE
Sbjct: 293 TAPGGISGGLGAGIGAGSDVEASVIQVTPQDKEAIERLKALGFPEHLVVQAYFACEKNEN 352
Query: 389 LAANYLL 395
LAAN+LL
Sbjct: 353 LAANFLL 359
>gi|304367641|gb|ADM26628.1| nucleotide excision repair factor Rad23 [Polypedilum vanderplanki]
Length = 383
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 149/419 (35%), Positives = 216/419 (51%), Gaps = 52/419 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ ++E V +K+ IE+ G + YPASQQ LI+ G +L D T+E
Sbjct: 1 MWITIKNLQQQTIKLEFDESQTVQKLKEKIESELGKE-YPASQQKLIYAGCILDDDKTIE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV E F+VVM+ K+ V+++ A A +T ++ T + T + + T A
Sbjct: 60 SYKVDEKKFIVVMVKKATVAAAAAPEKEEA----GKTITNESTTEKKKEDTPASKSTTTA 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
S P + + PA A A A A S QA +NLV G N VQ I
Sbjct: 116 SSTSSPSKSSSEQSQQPAAAQETASGGAAASQSQ-----IAQAEANLVMGENYNTMVQNI 170
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA----VPPVARASAGGQAGNP 236
++MG +DR++V+RAL A++NNPERAVEYL +GIPE P +GG GN
Sbjct: 171 MEMG---YDRDSVVRALNASFNNPERAVEYLITGIPEMALQDRPAPVGGNEQSGGGGGNI 227
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
A A + SG N D P L FLR QFQ +R ++Q
Sbjct: 228 GAALDRSSNLASSGESGGN----DESP--------------LAFLRRQAQFQQMRNVIQQ 269
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE-----------GNVLGQL 345
NP++L +LQ++G+ NP L++LI E+Q F+ ++NE +G + GN G L
Sbjct: 270 NPEMLNAVLQQIGQANPALLQLISENQEAFVNMLNESEDGRQAPSGGNDDDDRGNFGGLL 329
Query: 346 -ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
++P+ T ++REAIERL+A+GF LV++ + AC KNE LAAN+LL F+D
Sbjct: 330 DVGSVPE---FTQQDREAIERLKALGFPDELVVQAYIACEKNENLAANFLLSQT--FDD 383
>gi|328861399|gb|EGG10502.1| hypothetical protein MELLADRAFT_93497 [Melampsora larici-populina
98AG31]
Length = 416
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 147/436 (33%), Positives = 215/436 (49%), Gaps = 61/436 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++V+P ++++K I+ QG + Q +I GK+L D +
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSITIANLKLQIKESQG---FEPELQKIIFSGKILSDEKLIS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA--PT 118
+ +V E F V+ML K K A TV A T+++A P+ST + TPA P
Sbjct: 58 DIEVKEKDFFVIMLMKPKT----APTVPAP-----STSAAAVPSSTSAPVQTSTPAAPPA 108
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQ 178
+ P + PES P A + PA AP G + GS L+ T+
Sbjct: 109 TSTPSANPESTPATTTEPQAAVDSSTPAVAP-----------GTQDPGFLTGSGLQTTID 157
Query: 179 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ-TAVPPVARASAGGQAGNPP 237
+I++ G + RE V++A+RAA+NNP+RAVEYL +GIP A+PP A AG
Sbjct: 158 EIVN--GMGFPREEVVKAMRAAFNNPDRAVEYLMTGIPAGLDALPPSAAPRAGAPTPATA 215
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG---------------------AG 276
A PAP + P +LF ++ +
Sbjct: 216 TAPTPGANAVPAPVA-PTTASRNLFEAAAQHVAQQRQPAAAATPAAAPAGAAGATANTSR 274
Query: 277 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE- 335
L+ LRN+ Q LR +VQ NPQ+LQP +Q+LG+ NP L+ + + + ++E +
Sbjct: 275 VLESLRNNPQMVQLRQLVQTNPQLLQPFMQQLGQSNPALLAQLSANPELLMGFLSEGADQ 334
Query: 336 -GGEG-------NVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 387
G G LG Q V VTPEE+EAI+RL MGF+R L ++ +FAC+KNE
Sbjct: 335 AGDFGMDEGGFPPGLGGGDGTGAQYVQVTPEEQEAIDRLVGMGFERQLAIQAYFACDKNE 394
Query: 388 ELAANYLLDHMHEFED 403
E+AANYL++ H FED
Sbjct: 395 EMAANYLVE--HGFED 408
>gi|115438372|ref|XP_001218049.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188864|gb|EAU30564.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 377
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 155/416 (37%), Positives = 219/416 (52%), Gaps = 53/416 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK FEI+ +P + V VK+ I ++G +V Q LI+ GK+LKD T+E
Sbjct: 1 MKLTFKDLKQEKFEIDAEPSETVGQVKERICQLKGWEV---PQLKLIYSGKILKDENTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV E F+V M++K K SSS SAAP S P+T S+ A T A
Sbjct: 58 SYKVEEKGFIVYMVSKPKTSSS-----SAAP-------------SQGPSTPSRAAASTPA 99
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P + + PA AP P+PA A + S+ +D S L+ G E V Q+
Sbjct: 100 APPAPAPATSAPAQAAPPATPSPAATGA-SQSGSAFND-----PSALMTGRENENAVAQM 153
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
MG + R+ + RA+RAA+ NP+RAVEYL SGIP+ + A A
Sbjct: 154 ESMG---FARDDINRAMRAAFFNPDRAVEYLLSGIPDNIQQEQQQQQQQQQAAAAAAASP 210
Query: 241 QAQQPAAPAP-TSGPNANPLDLFPQ----GLPNMGSNAGAG-----TLDFLRNSQQFQAL 290
Q P+ + T+ P++LF G + G +G LDFLR++ FQ L
Sbjct: 211 TPQAPSGESGLTTAGGDEPVNLFEAAAQAGTQDTGRAGRSGGEALPNLDFLRHNPHFQQL 270
Query: 291 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP 350
R +VQ NPQ+L+P+LQ+L NP + LI +++ FL+L++E E G A+P
Sbjct: 271 RQLVQQNPQMLEPILQQLASGNPQIAALIGQNEEQFLQLLSEEDEEG----------ALP 320
Query: 351 ---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+ VT EER+AIERL +GF R V++ +FAC+KNEELAANYL ++ + ED
Sbjct: 321 PGTHQIHVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAANYLFENPDDPED 376
>gi|328771201|gb|EGF81241.1| hypothetical protein BATDEDRAFT_16317 [Batrachochytrium
dendrobatidis JAM81]
Length = 377
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 156/413 (37%), Positives = 216/413 (52%), Gaps = 61/413 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ +F++EV+ KV +VK+ I +G Y + Q LIH GK+L D +T+E
Sbjct: 1 MKLTFKTLQQDNFQVEVEQTAKVIEVKEAILAAKG---YTVASQKLIHSGKILNDASTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K++E F+VVM++K K ++ A V+ AP A + P + T
Sbjct: 58 ELKISEKDFIVVMVSKPKPVAAPAPVVAPAPVTPAVPVTPTVPVAPTATPA--------- 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
SA PPA P P + + VY A SNL
Sbjct: 109 -------SAVPPADSVDTPVN---PETLTTTTALATGAVYENAVSNL------------- 145
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ-AGNPPAQ 239
++MG + R+ V A+R A+NNP+RA EYL +GIP+ VAR A +
Sbjct: 146 MEMG---FPRDQVTHAMRTAFNNPDRAAEYLMTGIPD-----SVAREFASTAPVLSDTTT 197
Query: 240 TQAQQPAAPAPTSGPNANPLDLFP-----QGLPNMGSNA----GAG---TLDFLRNSQQF 287
T + A P + ++LF G+ A GAG TL FLRNS QF
Sbjct: 198 TPSSTAAPATPAAPAATQHINLFEAAAAQAAQSRSGAAASHAPGAGDASTLSFLRNSPQF 257
Query: 288 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL----G 343
Q LR +V + PQ+LQP+LQ++G+ NP L++LI ++Q FL+++NE E G GN+
Sbjct: 258 QQLRQLVHSQPQLLQPLLQQIGQTNPELLQLISQNQGQFLQMLNEGSEEG-GNIASAEGA 316
Query: 344 QLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 396
+AM Q +TVT EE EAI RL A+GFDR L LE +FAC+KNEELAANYL D
Sbjct: 317 DDTAAMGQQITVTTEENEAILRLAALGFDRGLALEAYFACDKNEELAANYLFD 369
>gi|194213056|ref|XP_001914974.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Equus
caballus]
Length = 393
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 143/399 (35%), Positives = 201/399 (50%), Gaps = 79/399 (19%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D +P + Q LI+ GK+L D + + ++ E +FVVVM+TK+K S
Sbjct: 55 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTS-- 112
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP---TVAPPQSVPESAPPPAAPAPAP 139
P+S P TS T AP T PP + PP AP
Sbjct: 113 --------------------PSSAVPPETSPTAAPESSTTFPPAPASGMSHPPPAPREDK 152
Query: 140 APAPAPAPAPAPVSSSVSDVYG-------QAASNLVAGSNLEATVQQILDMGGGSWDRET 192
+P+ PA +P S S S AAS LV GS E + +I+ MG ++RE
Sbjct: 153 SPSEESIPATSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERER 209
Query: 193 VIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTS 252
V+ ALRA+YNNP RAVEYL +GIP S + G+ ++QP A
Sbjct: 210 VVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVSEQPTTEA--- 256
Query: 253 GPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQN 312
AG L+FLR+ QFQ +R ++Q NP +L +LQ+LG++
Sbjct: 257 --------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQET 296
Query: 313 PHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIE 364
L + I HQ F++++NEP + EG V G + PQ + VTP+E+EAIE
Sbjct: 297 LSLPQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIE 355
Query: 365 RLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
RL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 356 RLKALGFPEGLVIQAYFACEKNENLAANFLLS--QNFDD 392
>gi|308808630|ref|XP_003081625.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS)
[Ostreococcus tauri]
gi|116060090|emb|CAL56149.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS),
partial [Ostreococcus tauri]
Length = 245
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 110/244 (45%), Positives = 150/244 (61%), Gaps = 20/244 (8%)
Query: 163 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 222
+ + +V G LEATV I+ MG ++RE V++ALRAA+NNP+RAVEYL +GIPEQ P
Sbjct: 5 SGAGMVMGPELEATVANIMTMG---FEREQVLKALRAAFNNPDRAVEYLLTGIPEQAEAP 61
Query: 223 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM-GSNAGA-GTLDF 280
A + PA A Q ++ L+LFP+G+P+M G AG G LDF
Sbjct: 62 RPAAQAQ-------PAAAAAPQAPQADVSAALGGGALNLFPEGIPDMSGDGAGDDGMLDF 114
Query: 281 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 340
LR + QFQA+R MVQ NPQILQPML EL +QNP L LI +Q +FL L+NEP+ +
Sbjct: 115 LRENPQFQAIRAMVQGNPQILQPMLAELQRQNPQLYHLINANQEEFLALLNEPLPENIQD 174
Query: 341 VLGQLASAMPQA--------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 392
++ +P+ + +T EERE ++RL +GF + +E F AC+KNE+LAAN
Sbjct: 175 LMSDFGEGVPELEGQGEGMQIELTQEERETVDRLAGLGFPVEICIEAFLACDKNEQLAAN 234
Query: 393 YLLD 396
YLL+
Sbjct: 235 YLLN 238
>gi|357138887|ref|XP_003571018.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 290
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/180 (55%), Positives = 122/180 (67%), Gaps = 11/180 (6%)
Query: 162 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP--EQT 219
AS+L++GSNL+ + QI++MGGGSWDR+ V RALRAAYNNPERAV+YLYSGIP +
Sbjct: 103 HVASDLLSGSNLDTMINQIMEMGGGSWDRDKVQRALRAAYNNPERAVDYLYSGIPVTAEV 162
Query: 220 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 279
AVP V + + T A P + PN PL LFPQ N G AG G+LD
Sbjct: 163 AVPVVPQGAN---------STDATPPGVTGLSGIPNTAPLSLFPQWASNAGGAAGGGSLD 213
Query: 280 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 339
FLRN+QQFQALR MV NPQILQPMLQELG+ +P L+RLIQE+ +F L NE + G+G
Sbjct: 214 FLRNNQQFQALREMVHTNPQILQPMLQELGRVDPQLLRLIQENSDEFFGLPNENFDAGDG 273
>gi|91085045|ref|XP_974357.1| PREDICTED: similar to putative RAD23-like B [Tribolium castaneum]
gi|270009030|gb|EFA05478.1| hypothetical protein TcasGA2_TC015662 [Tribolium castaneum]
Length = 334
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 140/415 (33%), Positives = 206/415 (49%), Gaps = 93/415 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+ L +F I ++P V D+K+ IE +G D Y Q LI++GK+LKD L
Sbjct: 1 MKITVRNLYQKNFIIHIEPSKTVKDLKQQIEAEKGKD-YRWDYQRLIYRGKILKDEAPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E+ F+V+M++K SG + V+ +S ++TQP+ T A
Sbjct: 60 EYNIDEDKFIVIMVSKP---DSGTTEVA----------NSGDNSATQPSATPAAAPAPAA 106
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P A + S++ +A S L+ G E VQ I
Sbjct: 107 P--------------------------AAPAPVAPASNLSSEAESALLMGEEYENMVQNI 140
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+DMG + R+ V +ALRA+YNNP+RAVEYL +GIP A G+
Sbjct: 141 VDMG---YPRDQVEQALRASYNNPDRAVEYLINGIP------------AMGE-------- 177
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
Q AAP+ + G+ S+A + L FLR+ QFQ ++ +VQ NPQ+
Sbjct: 178 --DQEAAPSMS-------------GIDERQSDA-SDPLAFLRSQPQFQQMKQVVQQNPQL 221
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG----GEGNV--------LGQLASA 348
L +LQ+LG+ NP L+ LI ++Q F+RL+NEP G GN G
Sbjct: 222 LNAVLQQLGQTNPALLNLISQNQESFVRLLNEPSAGAAPAATGNAPPAPVVAQGGGGTPP 281
Query: 349 MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+ TP++++AIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 282 QGTTIQFTPQDKDAIERLKALGFPEHLVVQAYFACEKNENLAANFLLS--QNFDD 334
>gi|444725253|gb|ELW65827.1| UV excision repair protein RAD23 like protein B [Tupaia chinensis]
Length = 367
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 141/404 (34%), Positives = 211/404 (52%), Gaps = 53/404 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KT + F+I++ PE+ V +K+ IE+ +G D +P Q LI+ G++LKD T L+
Sbjct: 1 MQVTLKTPQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVEDQKLIYAGEILKDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E V+ SK ++ VS++P A T ++ P S + TS PAP
Sbjct: 61 EYNIEEKDSVL-----SKPATD--FLVSSSPGTPASTPAAVTPASRR---TSSEPAP--- 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
E PP A AP + +S S++ A L G + + V +I
Sbjct: 108 ------EQEQPPEELADAPVATGPTSTGWTAGDASASNMLAGATGALTPGQSYQDMVSEI 161
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+ MG +++ VI ALRA++N+P RAVEYL +GIP VA G PP+
Sbjct: 162 MSMG---YEQAQVIAALRASFNDPHRAVEYLLTGIPGDRGSDTVADLPRAASMGAPPS-- 216
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
PA+ T+ ++ P+G P L+FL+N QFQ LR ++ NP +
Sbjct: 217 ----PASATSTAMASS------PEGTP----------LEFLQNQLQFQQLRQTIRQNPSL 256
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV---------LGQLASAMPQ 351
L +LQ+LG + PHL++LI ++Q F+++++EPV G Q
Sbjct: 257 LPMLLQQLGLRGPHLLQLISQYQEHFIQMLHEPVPEAGGQSGVGGAGDAGTAQAGHGQAN 316
Query: 352 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
V VTP+EREAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 317 YVRVTPQEREAIERLKALGFPEGLVIQAYFACEKNETLAANFLL 360
>gi|391330987|ref|XP_003739932.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Metaseiulus occidentalis]
Length = 336
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 136/400 (34%), Positives = 193/400 (48%), Gaps = 74/400 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V VK L F IE+ + V D+K+ I ++G+ +PA Q LI QG+++ D ++
Sbjct: 3 LTVNVKCLTNELFTIEIDDDCTVKDMKEKISEIKGA-AFPAVHQKLIAQGRIMADQDKVK 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ FVV+M++K PA AQ A T + A V
Sbjct: 62 TYDLKSVKFVVIMVSK--------------PATGAQ--PGAASTEQPAAPAAAAEAKPVE 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P+ P+ A P A P+ + A S LV G + V+ I
Sbjct: 106 SPEEKPKEAGTPTATRPSTTTPSTDSSAGN-------------ESTLVVGEQYKQMVESI 152
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+MG + ++ V RALRA+YNNP+RAVEYL +G P A NP A
Sbjct: 153 TEMG---YPQDQVERALRASYNNPDRAVEYLVTGFP--------PEEEEARAAENPRAPR 201
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
Q P G+ G L FLRN QFQ +R ++ NP +
Sbjct: 202 Q-------------------------PGAGTQ---GDLSFLRNQPQFQQMRNAIRDNPAL 233
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMPQAVT---V 355
L ++Q+LG NP L+RLI ++Q DF+RL+NE + EG + LG+ A A V V
Sbjct: 234 LDTIIQQLGSNNPDLLRLITQNQDDFMRLLNEEDDAAEGALPELGEGAPAGGPLVIEAHV 293
Query: 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
TP++REAIERL+A+GF LV+E +FAC+KNE+LA N+LL
Sbjct: 294 TPQDREAIERLKALGFPEHLVVEAYFACDKNEDLAVNFLL 333
>gi|356551713|ref|XP_003544218.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair protein
RAD23-1-like [Glycine max]
Length = 254
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 125/210 (59%), Gaps = 25/210 (11%)
Query: 157 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 216
++ YG ASN V GSNLE T+QQI+DMGGGSWDR+TV ALRAA NNPE V+YLYSGIP
Sbjct: 66 TNTYGLTASNXVVGSNLEKTIQQIMDMGGGSWDRDTVSHALRAAXNNPEHVVDYLYSGIP 125
Query: 217 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG-PNANPLDLFPQGLPNMGSNAGA 275
E + S G P QT A G N++PL++FP+ + G AG
Sbjct: 126 EVVEI----FMSIGPY---PINQTTKIGGATARAVFGVHNSSPLNMFPKEII-CGVGAGI 177
Query: 276 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 335
G LDF RN+ LQP+L ELGKQN L+RLI EH +FL L NEPVE
Sbjct: 178 GLLDFHRNN----------------LQPVLXELGKQNLSLLRLISEHHVEFLXLTNEPVE 221
Query: 336 GGEGNVLGQLASAMPQAVTVTPEEREAIER 365
G EG++ Q MP ++ VTP E+ AI+R
Sbjct: 222 GSEGDIFDQPEQDMPHSINVTPAEQHAIKR 251
>gi|116283302|gb|AAH03846.1| Rad23a protein [Mus musculus]
Length = 349
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 136/413 (32%), Positives = 202/413 (48%), Gaps = 95/413 (23%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K PAP A P
Sbjct: 65 HIDEKNFVVVMVTKAKAGQG-------------------------------IPAPPEASP 93
Query: 123 QSVPE-SAP-PPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQ-----------------A 163
+VPE S P PP + P P +P S + + A
Sbjct: 94 TAVPEPSTPFPPVLASGMSHPPPTSREDKSPSEESTTTTSPESISGSVPSSGSSGREEDA 153
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 223
AS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 154 ASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------- 203
Query: 224 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 283
S + G+ +QPA A AG L+FLR+
Sbjct: 204 ---GSPEPEHGSVQESQAPEQPATEA-----------------------AGENPLEFLRD 237
Query: 284 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGG 337
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 238 QPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDV 297
Query: 338 EGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 388
EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC K ++
Sbjct: 298 EGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKKKK 349
>gi|331230142|ref|XP_003327736.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309306726|gb|EFP83317.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 409
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 143/449 (31%), Positives = 202/449 (44%), Gaps = 93/449 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++V+P V +K I+ QG + QQ LI GKVL D T+E
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSTTVEKLKSLIKESQG---FEPEQQKLIFSGKVLADDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ V E F VVML K K APTV
Sbjct: 58 QIGVKEKDFFVVMLIKPKT------------------------------------APTVP 81
Query: 121 PPQSVP-------------ESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNL 167
P SVP + P+ APA A +S+ + G
Sbjct: 82 APASVPSGAGAAASTSATAPTPAAAQPATATPSSTTAPASTDADNASAATPASGTQDPGF 141
Query: 168 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVA 225
+ GSNL+ T+ +I++ G + RE V +A+RAA+NNP+RAVEYL +GIP PPV
Sbjct: 142 LVGSNLQKTIDEIVN--GMGFPREQVTKAMRAAFNNPDRAVEYLMTGIPAGLDAPAPPVT 199
Query: 226 --------------------RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQG 265
+AG + A Q P + P A P Q
Sbjct: 200 LPTNAPSTVNPSATTPSAAAAPAAGSRNLFEAAAEHVAQQRQPGEAALPTAEPAQAGAQS 259
Query: 266 LPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTD 325
+P + L+ LRN+ Q LR +VQ NP +LQP LQ+LG+ NP+L+ + + T
Sbjct: 260 IPT------SRALEALRNNPQMIQLRQLVQQNPNLLQPFLQQLGQSNPNLLTQLTSNPTL 313
Query: 326 FLRLINEPVEGGEGN----------VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRAL 375
+ + E EG + + Q V V+ EER+AIERL +GF+R L
Sbjct: 314 LMSFLAEGAEGLDDDSSLPPGMMGGAGAGGPEDQTQYVQVSQEERDAIERLVGLGFERQL 373
Query: 376 VLEVFFACNKNEELAANYLLDH-MHEFED 403
V++ +FAC+KNEE+AANYL++H +FE+
Sbjct: 374 VVQAYFACDKNEEMAANYLIEHGFDDFEE 402
>gi|74195673|dbj|BAE39643.1| unnamed protein product [Mus musculus]
Length = 327
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 128/357 (35%), Positives = 183/357 (51%), Gaps = 58/357 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP------------ 108
E K+ E +FVVVM+TK K + +A PA Q +S+ PT+
Sbjct: 61 EYKIDEKNFVVVMVTKPK------AVTTAVPAT-TQPSSTPSPTAVSSSPAVAAAQAPAP 113
Query: 109 --------TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAP---APAPAPA-PVSSSV 156
T S PA T A + P A P PA PA P +PAPA + P SS
Sbjct: 114 TPALPPTSTPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSR 173
Query: 157 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 216
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 174 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
Query: 217 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 272
Q V P PP P +PA + +
Sbjct: 231 GDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATT--------TATTTTT 270
Query: 273 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 329
+G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F R
Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFFRC 327
>gi|441628881|ref|XP_003275714.2| PREDICTED: UV excision repair protein RAD23 homolog A [Nomascus
leucogenys]
Length = 397
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 151/433 (34%), Positives = 219/433 (50%), Gaps = 73/433 (16%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSG-- 110
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSSVSDVYGQ---AASNLVAGSNLEAT 176
S PPPAA +P+ AP +P S S G+ AAS LV GS E
Sbjct: 111 ----MSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP AS + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------ASPEPEHGSV 213
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLF---------------PQGLPNMGSNAGAGTL-DF 280
++QPA A A L + P P + ++ A F
Sbjct: 214 QESQVSEQPATEAGGCARAACALQMHSPCAFAFAVCFTWRKPSASPILQASPPALVCSSF 273
Query: 281 LRNSQQFQALRTMVQANPQILQ-PMLQELGKQNPH-LMRLIQEHQTDFLRLINEP----- 333
L QF+ + + Q + P L PH L + I HQ F++++NEP
Sbjct: 274 LARHSQFKGCDDLGRGGDQGCELPCL-------PHPLPQQISRHQEQFIQMLNEPPGELA 326
Query: 334 -VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 390
+ EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LA
Sbjct: 327 DISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLA 385
Query: 391 ANYLLDHMHEFED 403
AN+LL F+D
Sbjct: 386 ANFLLS--QNFDD 396
>gi|332025640|gb|EGI65802.1| UV excision repair protein RAD23-like protein B [Acromyrmex
echinatior]
Length = 360
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 136/422 (32%), Positives = 194/422 (45%), Gaps = 95/422 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE+ V D+K+ IET +G +PA Q LI+ GK+L D L
Sbjct: 1 MIITLKNLQQQTFTIEIDSLQTVKDLKEKIETQKG---FPAEHQKLIYAGKILADEQPLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+TK K T + P TS + T + +
Sbjct: 58 EYNIDEKKFIVVMVTKPK-------------------TGATPKTSEEQRTEGDKKEESTS 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ P S P A A + + GQA S L+ G + V I
Sbjct: 99 SATTQPSSNPNVQDTTRA-------ASNVQEQPVAAAPAAGQAESALLMGEDYNTMVNNI 151
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q P +PP
Sbjct: 152 MDMG---YEREQVVQALRASFNNPDRAVEYLITGIPAQLFEDP---------PEDPPEAQ 199
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+ Q + P L FLR QFQ +R ++Q NPQ+
Sbjct: 200 EQLQDQSQDP---------------------------LAFLRLQPQFQQMRQVIQQNPQL 232
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE---GGEGNVL--------------- 342
L +LQ++G NP L++LI ++Q F+R++NEP E G VL
Sbjct: 233 LNNLLQQIGSTNPALLQLISQNQETFVRMLNEPAEPTTGTGARVLPSGGGVGPAAAATAG 292
Query: 343 ---------GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 393
G + +TP++REAIERL+A+GF LV++ +FAC KNE LAAN+
Sbjct: 293 GAVNGGPGAGAATGVGSGLIQITPQDREAIERLKALGFPEHLVVQAYFACEKNENLAANF 352
Query: 394 LL 395
LL
Sbjct: 353 LL 354
>gi|331250500|ref|XP_003337858.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309316848|gb|EFP93439.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 409
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 143/449 (31%), Positives = 202/449 (44%), Gaps = 93/449 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++V+P V +K I+ QG + QQ LI GKVL D T+E
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSTTVEKLKSLIKESQG---FEPEQQKLIFSGKVLADDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ V E F VVML K K APTV
Sbjct: 58 QIGVKEKDFFVVMLIKPKT------------------------------------APTVP 81
Query: 121 PPQSVP-------------ESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNL 167
P SVP + P+ APA A +S+ + G
Sbjct: 82 APASVPSGAGAAASTSATAPTPAAAQPATATPSSTTAPASTDADNASAATPASGTQDPGF 141
Query: 168 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PVA 225
+ GSNL+ T+ +I++ G + RE V +A+RAA+NNP+RAVEYL +GIP P PV
Sbjct: 142 LVGSNLQKTIDEIVN--GMGFPREQVTKAMRAAFNNPDRAVEYLMTGIPAGLDAPAAPVT 199
Query: 226 --------------------RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQG 265
+AG + A Q P + P A P Q
Sbjct: 200 LPTNAPSTVNPSATTPSAAAAPAAGSRNLFEAAAEHVAQQRQPGEAALPTAEPAQAGAQS 259
Query: 266 LPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTD 325
+P + L+ LRN+ Q LR +VQ NP +LQP LQ+LG+ NP+L+ + + T
Sbjct: 260 IPT------SRALEALRNNPQMIQLRQLVQQNPNLLQPFLQQLGQSNPNLLTQLTSNPTL 313
Query: 326 FLRLINEPVEGGEGN----------VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRAL 375
+ + E EG + + Q V V+ EER+AIERL +GF+R L
Sbjct: 314 LMSFLAEGAEGLDDDPSLPPGMMGGAGAGGPEDQTQYVQVSQEERDAIERLVGLGFERQL 373
Query: 376 VLEVFFACNKNEELAANYLLDH-MHEFED 403
V++ +FAC+KNEE+AANYL++H +FE+
Sbjct: 374 VVQAYFACDKNEEMAANYLIEHGFDDFEE 402
>gi|148670317|gb|EDL02264.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|148670318|gb|EDL02265.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
Length = 344
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 166/313 (53%), Gaps = 47/313 (15%)
Query: 109 TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAP---APAPAPA-PVSSSVSDVYGQAA 164
T S TPA T A + P A P PA PA P +PAPA + P SS S+++ A
Sbjct: 50 TPASTTPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDAT 109
Query: 165 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTA 220
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 110 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV 166
Query: 221 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 280
V P +A + G +P A A + +G L+F
Sbjct: 167 VDPPPQAVSTGTPQSPAVAAAAATTTA--------------------TTTTTSGGHPLEF 206
Query: 281 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--- 337
LRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 207 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQ 266
Query: 338 -------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACN 384
G + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 267 GGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACE 326
Query: 385 KNEELAANYLLDH 397
KNE LAAN+LL
Sbjct: 327 KNENLAANFLLQQ 339
>gi|149037168|gb|EDL91699.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
gi|149037169|gb|EDL91700.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
Length = 343
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 118/312 (37%), Positives = 165/312 (52%), Gaps = 46/312 (14%)
Query: 109 TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAP---APAPAPA-PVSSSVSDVYGQAA 164
T S TPA T A + P A P PA PA P +PAPA + P SS S+++ A
Sbjct: 50 TPASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDAT 109
Query: 165 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTA 220
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 110 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV 166
Query: 221 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 280
V P PP P +PA + + +G L+F
Sbjct: 167 VDP------------PPQAVSTGTPQSPAVAAAAATTTAT--------TTTTSGGHPLEF 206
Query: 281 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--- 337
LRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 207 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQ 266
Query: 338 ------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 385
G + + S + VTP+E+EAIERL+A+GF LV++ +FAC K
Sbjct: 267 GGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEK 326
Query: 386 NEELAANYLLDH 397
NE LAAN+LL
Sbjct: 327 NENLAANFLLQQ 338
>gi|60422770|gb|AAH90351.1| Rad23b protein [Rattus norvegicus]
Length = 333
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 165/310 (53%), Gaps = 46/310 (14%)
Query: 109 TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAP---APAPAPA-PVSSSVSDVYGQAA 164
T S TPA T A + P A P PA PA P +PAPA + P SS S+++ A
Sbjct: 40 TPASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDAT 99
Query: 165 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTA 220
S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q
Sbjct: 100 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV 156
Query: 221 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 280
V P PP P +PA + + +G L+F
Sbjct: 157 VDP------------PPQAVSTGTPQSPAVAAAAATTTAT--------TTTTSGGHPLEF 196
Query: 281 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--- 337
LRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 197 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQ 256
Query: 338 ------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 385
G + + S + VTP+E+EAIERL+A+GF LV++ +FAC K
Sbjct: 257 GGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEK 316
Query: 386 NEELAANYLL 395
NE LAAN+LL
Sbjct: 317 NENLAANFLL 326
>gi|154292520|ref|XP_001546834.1| nucleotide excision repair protein RAD23 [Botryotinia fuckeliana
B05.10]
gi|347836511|emb|CCD51083.1| similar to UV excision repair protein (RadW) [Botryotinia
fuckeliana]
Length = 376
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 149/426 (34%), Positives = 214/426 (50%), Gaps = 84/426 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F +E +P + VSDVK+ I +G + ASQQ LI+ GK+L+D TLE
Sbjct: 1 MKLTFKDLKQQKFVLEAEPTELVSDVKEKIFKEKG---WEASQQKLIYSGKILQDANTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT--TSQTPAPT 118
+ E F+V M+TK K + + +S A + ++ P + + TS T P
Sbjct: 58 SYHIEEKGFIVCMITKPKAAPAASSAPKAPSTPAPASAATPAPPAAPAHSSSTSNTAVP- 116
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQ 178
A P+PA A PAP P+ + L G+ A +
Sbjct: 117 --------------ATPSPAGASIPAPQATPS-----------NETTGLAMGAERSAQIA 151
Query: 179 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PVARASAGGQAGNP 236
++ MG ++R + A+RAA+ N ERA+EYL +GIPE+ P A A QA +P
Sbjct: 152 EMESMG---FERSQIEAAMRAAFYNSERAIEYLLNGIPERLLQEQQPTPAAPAAVQASSP 208
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-------------------- 276
PA +G +P+DLF Q N G+ GA
Sbjct: 209 PA-------------AGGEDDPVDLF-QAAANAGNRGGAARGRPGVDPLGGAGAGAAAGG 254
Query: 277 --TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 334
LDFLRN+ QFQ LR +VQ PQ+L+P+LQ++G NP L LI +H FL+L++E
Sbjct: 255 LGNLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLATLISQHPEQFLQLLSENA 314
Query: 335 EGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 391
+ + +P QA+ VTPEER+AIERL +GF+R ++ +FAC+KNEELAA
Sbjct: 315 DDD---------APLPPGAQAIEVTPEERDAIERLCRLGFNREQAIQAYFACDKNEELAA 365
Query: 392 NYLLDH 397
N+L +
Sbjct: 366 NFLFEQ 371
>gi|145351567|ref|XP_001420144.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580377|gb|ABO98437.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 361
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 113/244 (46%), Positives = 149/244 (61%), Gaps = 30/244 (12%)
Query: 165 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 224
S LV+G+ LEA V QI+ MG ++RE V+ A+RAA+NNP+RAVEYL +GIPE +
Sbjct: 129 SGLVSGAELEAAVTQIMTMG---FEREQVMNAMRAAFNNPDRAVEYLLTGIPETS----- 180
Query: 225 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNM-GSNAGAG-TLDFLR 282
QA A A P A A G N L+LFP+G+P+M G +G G LDFLR
Sbjct: 181 -------QAPPAAAAPAADAPDASAALGG---NALNLFPEGIPDMAGDRSGDGQMLDFLR 230
Query: 283 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV-------- 334
++ QFQA+R MVQ P ILQPML EL +QNP L LI +Q +FL L+NEP+
Sbjct: 231 DNPQFQAIRAMVQGQPHILQPMLAELQRQNPQLYHLINNNQEEFLALLNEPLPENIRDLM 290
Query: 335 -EGGEGNVLGQLASAMPQA-VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 392
EG V +L A + ++ EERE I+RL +GF + +E + AC+KNE+LAAN
Sbjct: 291 AEGFGDGVAPELQGDDDGAQIELSQEERETIDRLAGLGFPLEICVEAYLACDKNEQLAAN 350
Query: 393 YLLD 396
YLL+
Sbjct: 351 YLLN 354
>gi|195450799|ref|XP_002072638.1| GK13711 [Drosophila willistoni]
gi|194168723|gb|EDW83624.1| GK13711 [Drosophila willistoni]
Length = 420
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 147/471 (31%), Positives = 216/471 (45%), Gaps = 119/471 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F I+ PE V ++KK I +G++ P Q+ LI+ G +L D +
Sbjct: 1 MIITVKNLQQQTFTIDFDPEKTVLELKKKIFEERGAEYLPEKQK-LIYAGVILVDDRKIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV E F+VVMLT+ SS +ST ++ A+ +P+ P PT
Sbjct: 60 SYKVDEKKFIVVMLTRDAAPSSASSTTASTSEKVAE----------KPSEKKTNPEPT-- 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAP-APAPVSSSVSDV---------------YGQAA 164
P AP+PA AP PA A + S + SD +A
Sbjct: 108 -----------PTAPSPAAVSAPVPASVASSGASGTTSDSPNTETTVSPTAPSTDQTRAE 156
Query: 165 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 224
S+L+ G TV +++MG + RE V RA+ A++NNPERAVEYL +GIP +
Sbjct: 157 SSLLMGEEYNRTVSSMVEMG---YPREQVERAMAASFNNPERAVEYLINGIPAE------ 207
Query: 225 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 284
+ Q P S PN D P+ S A +FLR+
Sbjct: 208 --------------EDQLFNDTDPTSQSNPNPRVADASSINAPSGRSTADP--FEFLRSQ 251
Query: 285 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-------- 336
QF +R+++ NPQ+L +LQ++G+ NP L++LI E+Q FL ++N+P+EG
Sbjct: 252 PQFLQMRSLIYQNPQLLDAVLQQIGQTNPALLQLISENQDAFLNMLNQPLEGESSARGTA 311
Query: 337 -GEG------NVLGQLASAMPQAVT----------------------------------- 354
EG V Q ++A Q T
Sbjct: 312 RSEGLASGLLEVAAQRSAAGAQETTSAARASVPGSPSATEGGASERETAEQQQLAEGVAT 371
Query: 355 --VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+ P++++AIERL+A+GF ALVL+ +FAC K+EELAAN+LL F+D
Sbjct: 372 IRLNPQDQDAIERLKALGFPEALVLQAYFACEKDEELAANFLLS--SSFDD 420
>gi|430811680|emb|CCJ30877.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1394
Score = 177 bits (448), Expect = 1e-41, Method: Composition-based stats.
Identities = 133/406 (32%), Positives = 204/406 (50%), Gaps = 69/406 (16%)
Query: 1 MKVFVKTLKGTHFEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ K LK F I+ V P + VK+ I+ VQG D+ Q LI+ GK+L D T+
Sbjct: 1040 MKLTFKDLKQQKFTIDNVDPRCTILQVKEMIQEVQGHDL---KHQKLIYSGKILLDSNTV 1096
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + E F+V M+ K K Q P+ ++
Sbjct: 1097 ESYDIKEKDFIVCMVQKPK----------------------------------QVPSASI 1122
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
+V + P A AP + P + + S + +D ++LV G + ++
Sbjct: 1123 VAESTVSTNQSDPKASAPETSLPSVPGTSVSSSSETFND-----PNSLVVGLLCDTAIKN 1177
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
+++MG ++R V A+RAA+NNP+RAVEYL +GIPE + + ++S+ Q
Sbjct: 1178 MMEMG---YERTQVENAMRAAFNNPDRAVEYLLTGIPEHLSRELLQQSSSSQQVSRAQQI 1234
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQ-------------GLPNMGSNAGAGTLDFLRNSQQ 286
Q+ + P T + N +L Q G MGSN A +L FLRN+ Q
Sbjct: 1235 VQSTPTSTPTSTPSRSENLFELAAQVSQQGRERLNTSSGNSLMGSN-NAESLAFLRNNPQ 1293
Query: 287 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA 346
F LR +VQ PQ+L+ +LQ+LG+ N L LI ++ FL+L++E +E G+G
Sbjct: 1294 FLMLRRLVQTQPQMLESVLQQLGQGNLQLATLINQNSDAFLQLLSEGME-GDG------T 1346
Query: 347 SAMPQAV--TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 390
+AMP V +T EER+AIERLEA+GF +V++ +FAC+KNEE++
Sbjct: 1347 AAMPNIVQLQLTEEERQAIERLEALGFSHGVVVQAYFACDKNEEVS 1392
>gi|322794461|gb|EFZ17533.1| hypothetical protein SINV_80108 [Solenopsis invicta]
Length = 376
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 133/423 (31%), Positives = 199/423 (47%), Gaps = 100/423 (23%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ V+ G F IE+ V D+K+ IE +G +PA Q LI+ GK+L D L E
Sbjct: 18 LIVEDYAGQTFTIEIDSSQTVKDLKEKIEMQKG---FPAEHQKLIYAGKILADEQPLTEY 74
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVS--AAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+VVM+TK K ++ ++ A + ++TSSA +TQP++ T A
Sbjct: 75 NIDEKKFIVVMVTKPKAGATPKTSEEQRAEGDKKEESTSSA---TTQPSSNLNIQDTTRA 131
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
A ++ + GQA S L+ G + V I
Sbjct: 132 -------------------------ASNVQEQPAAAAPAAGQAESALLMGEDYNTMVNNI 166
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+DMG ++RE V++ALRA++NNP+RAVEYL +GIP Q P +PP
Sbjct: 167 MDMG---YEREQVVQALRASFNNPDRAVEYLLTGIPAQLFEDP---------PEDPPEAQ 214
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+ Q + P L FLR QFQ +R ++Q NPQ+
Sbjct: 215 EQLQDQSQDP---------------------------LAFLRLQPQFQQMRQVIQQNPQL 247
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA-------- 352
L +LQ++G NP L++LI ++Q F+R++NEPVE G L ++
Sbjct: 248 LNNLLQQIGSTNPALLQLISQNQEAFVRMLNEPVEPAAGTGARVLPASGGGVAPATAAAV 307
Query: 353 --------------------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 392
+ +TP++R+AIERL+A+GF LV++ +FAC KNE LAAN
Sbjct: 308 GGAVNGGAGTGAAAGVGSGLIQITPQDRDAIERLKALGFPEHLVVQAYFACEKNENLAAN 367
Query: 393 YLL 395
+LL
Sbjct: 368 FLL 370
>gi|412992628|emb|CCO18608.1| predicted protein [Bathycoccus prasinos]
Length = 392
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 141/434 (32%), Positives = 200/434 (46%), Gaps = 88/434 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKDVTT 58
MK+ +KTL FEIE+ K + ++ ++G A L+ H+G+VL+D T
Sbjct: 1 MKIHLKTLTAQKFEIEISDPSKTTILQCKKLAIEGQPQLGAETDFLVFVHKGQVLEDEKT 60
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
+ E ++ E+ FVVVM K+K + + + APAN T++ P T
Sbjct: 61 VSEAEITEDGFVVVMSKKTKKPAEKTTAAAPAPANPPATSAPDVAAPVAPAAAVAMAPQT 120
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQ 178
A VP S+P LV G+ LE ++
Sbjct: 121 TA---EVPVSSP-----------------------------------GLVVGAELEKAIE 142
Query: 179 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 238
++ MG + R+ + ALRAA+NNP+RAVEYL +GIPE V A +A A
Sbjct: 143 ELQAMG---FPRDQCVAALRAAFNNPDRAVEYLLNGIPEGMMVSAPAANAAAAAPPPAAA 199
Query: 239 QTQAQQPAAPAPTS-------------------GPNANPLDLFPQGLP------------ 267
A T+ + PL+LFPQG+P
Sbjct: 200 PGADAAAANAVRTAEGATASAPGVGAGGAPPAAADGSAPLNLFPQGIPANLAAAGAGGAE 259
Query: 268 NMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 327
TL FLR++ QFQA+R MVQ NP ILQPML EL +QNP L LI +Q +FL
Sbjct: 260 EEAQEGEVNTLAFLRDNPQFQAIRAMVQGNPSILQPMLGELQRQNPQLYHLINSNQEEFL 319
Query: 328 RLINEPVEG-----GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFA 382
+L+NEP + GEG + + + ++ EE EA ERL A+GF +E + A
Sbjct: 320 QLLNEPSDFEAQGMGEGEM---------EQIELSKEENEACERLMALGFTMEQCVEAYIA 370
Query: 383 CNKNEELAANYLLD 396
C+KNEE+AANYL +
Sbjct: 371 CDKNEEMAANYLFE 384
>gi|194771119|ref|XP_001967622.1| GF19257 [Drosophila ananassae]
gi|190614417|gb|EDV29941.1| GF19257 [Drosophila ananassae]
Length = 405
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 136/444 (30%), Positives = 203/444 (45%), Gaps = 94/444 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE + E V ++KK I V+GS+ Y +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFEAEKTVFELKKKIFDVRGSE-YIVEKQKLIYAGVILVDDHTIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V E F+VVMLT+ SS+ S + A Q + + P ++ T+ S T +
Sbjct: 60 SYNVDEKKFIVVMLTRDTASSTCQSRIKEADNAQNRLCLNTQPLPSEITSNSDTFCGSTN 119
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQ--AASNLVAGSNLEATVQ 178
P + A + + +V Q A SNL+ G TVQ
Sbjct: 120 QPIII---------------SATNETKQRNDLVGELENVSLQSRAESNLLMGDEYTQTVQ 164
Query: 179 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP-EQTAVPPVARASAGGQAGNPP 237
+++MG + RE V RA+ A++NNPERAVEYL +G+P E + V S NP
Sbjct: 165 SLIEMG---YPREQVERAMSASFNNPERAVEYLINGLPAEDENIFHVDEEST-----NPS 216
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
Q + T + D F +FLR+ QF +R+++ N
Sbjct: 217 LVQSGPQNISALSTGHSTGSSSDPF----------------EFLRSQPQFLQMRSLIYQN 260
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT--- 354
P +L +LQ++G+ NP L++LI E+Q FL ++N+P+E G A A+P+ T
Sbjct: 261 PHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIENDSG-----AADAVPRTSTNRR 315
Query: 355 -------------------------------------------VTPEEREAIERLEAMGF 371
+ +E+EAIERL+A+GF
Sbjct: 316 RRVFSSELEGAVAAHRLGTNELRENQTGGNDEPFEHPGVATIRLNSQEQEAIERLKALGF 375
Query: 372 DRALVLEVFFACNKNEELAANYLL 395
ALVL+ +FAC KNEELAAN+LL
Sbjct: 376 PEALVLQAYFACEKNEELAANFLL 399
>gi|195402315|ref|XP_002059752.1| GJ16257 [Drosophila virilis]
gi|194155966|gb|EDW71150.1| GJ16257 [Drosophila virilis]
gi|263359664|gb|ACY70500.1| hypothetical protein DVIR88_6g0037 [Drosophila virilis]
Length = 448
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 140/472 (29%), Positives = 217/472 (45%), Gaps = 107/472 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F I+ PE V ++K+ I +G++ Y +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFTIDFDPEKTVLELKRQIFNERGAE-YFVEKQKLIYAGVILTDDRTIN 59
Query: 61 ENKVAENSFVVVMLTKS-------KVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQ 113
KV E F+VVMLT+ +++ VS+ A + ++ T +P S+
Sbjct: 60 SYKVDEKKFIVVMLTRDISGTSSGSSNNTNTEAVSSQQARKQAKETTERSTQDEPLVESK 119
Query: 114 TPAPTVAPPQSVPESAPPPAAPAPAP---APAPAPAPAPAPVSSSVSD------------ 158
PA V S + A + A A +PAPA + S +D
Sbjct: 120 -PAVQVKESSSSKKGAKTNKITSEAGEEVGSTGAGSPAPASTTGSTTDYSSIDLVGELAN 178
Query: 159 --VYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 216
+ +A SNL+ G TV +++MG + RE V RA+ A++NNPERAVEYL +GIP
Sbjct: 179 TSLQTRAESNLLMGEEFNRTVASMVEMG---YPREQVERAMAASFNNPERAVEYLINGIP 235
Query: 217 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 276
++ + +A N + PA A A+P +
Sbjct: 236 QEENLFTPGDDEESSRASNIHQGAASDLPAESA------ADPFE---------------- 273
Query: 277 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE- 335
FLR+ QF +R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P+E
Sbjct: 274 ---FLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPLED 330
Query: 336 --GGEGNVLGQ----------LASAMPQAVT----------------------------- 354
LG+ L S+ QA T
Sbjct: 331 EVATNAQRLGRTQSNSSRTENLTSSASQAATTEGQRSAAGSENQPISVALEGDGTVSAER 390
Query: 355 -----------VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+TP++++AIERL+A+GF ALVL+ +FAC K+EELAAN+LL
Sbjct: 391 NVPTESLATIRLTPQDQDAIERLKALGFPEALVLQAYFACEKDEELAANFLL 442
>gi|67621260|ref|XP_667750.1| RAD 23B protein [Cryptosporidium hominis TU502]
gi|54658903|gb|EAL37511.1| RAD 23B protein - channel catfish [Cryptosporidium hominis]
Length = 341
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 122/405 (30%), Positives = 204/405 (50%), Gaps = 74/405 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++T++ T E+EV+ + + VK+ I+ + + V AS+ LI G++L D T++
Sbjct: 1 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E +VV+L+K + S + ++ ++ P ++ T+ QT +
Sbjct: 59 DVGIKEGERLVVLLSKGASQKAAESQQNKQNNTSNESNTNTDPAASATTSNIQTQSGNSD 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P AS L+ G+ LE T+ I
Sbjct: 119 PS-------------------------------------IDSRASALLTGTELEETITNI 141
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
++MG ++RE V RA+RAA+NNP+RAVEYL SG+P +P
Sbjct: 142 VNMG---FEREQVTRAMRAAFNNPDRAVEYLTSGLP----IP------------------ 176
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGL---PNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
+ P AP PT+ N GL + S G L+ LR + FQ LR++VQ +
Sbjct: 177 --ENPVAPNPTNITPVNSNASLNAGLTPSEELSSEQLPGNLESLRTNPLFQQLRSVVQQD 234
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQAVTVT 356
P+IL +L +G+ NP +++LI E+Q +F+R++ E + + +G+ + M + +T
Sbjct: 235 PRILPELLVRIGQSNPEILQLITENQEEFIRMM----ERTDSDEVGETSQFPMQTTIQLT 290
Query: 357 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 401
P+E E++ERL+A+GF R V+E + C KNEELAANYLL++ +F
Sbjct: 291 PQEAESVERLQALGFPRNAVIEAYLICEKNEELAANYLLENSADF 335
>gi|209879445|ref|XP_002141163.1| UV excision repair protein Rad23 [Cryptosporidium muris RN66]
gi|209556769|gb|EEA06814.1| UV excision repair protein Rad23, putative [Cryptosporidium muris
RN66]
Length = 347
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 126/401 (31%), Positives = 199/401 (49%), Gaps = 63/401 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+T++ T EIEV+ V +K+ IE AS+Q LI G++L D T++
Sbjct: 1 MKIKVRTVQNTEHEIEVEDNFTVLQIKQLIEAKNSQ--MTASRQKLIFAGRILGDSQTVQ 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E +VV+++K GA ++ +Q + ++ T P TT+ P
Sbjct: 59 DIGIKEGERLVVLVSK------GAIQQKSSEISQTKNIGNSTSAQTTPVTTNTGVIP--- 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
++ + Y +AS L+ G+ LE T+ I
Sbjct: 110 --------------------------------NNCDQNTYESSASALITGTELETTINNI 137
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
++MG ++R VI A+RAA+NNP+RAVEYL SGIP P GQ +
Sbjct: 138 VNMG---FERNQVIAAMRAAFNNPDRAVEYLTSGIP-----LPGIIIQGQGQGQGQSEVS 189
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+Q P + N + N + G LD LR + FQ LR +VQ +P+I
Sbjct: 190 LSQAATTPINPEMSDINQIS------TNASGDTVTGALDSLRTNPIFQQLRMVVQQDPRI 243
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 360
L +L +G+ NP +++LI E+Q +F+RL+ E + + +G++ A +V +T +E
Sbjct: 244 LPELLARVGQTNPEILQLITENQEEFIRLM----ERTDSDDIGEINGAT--SVYLTQQEA 297
Query: 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 401
EA+ERL+ +GF R LE F C KNEELAANYL+++ +F
Sbjct: 298 EAVERLQGLGFPRNAALEAFLICEKNEELAANYLIENSADF 338
>gi|164660784|ref|XP_001731515.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
gi|159105415|gb|EDP44301.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
Length = 406
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 132/414 (31%), Positives = 201/414 (48%), Gaps = 32/414 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VK+L G +F I+V+P D V VK+ I+ QG +PA Q LI+ GK+L D +
Sbjct: 1 MKLLVKSLAGGNFHIDVEPSDSVGSVKQKIQASQG---HPAENQKLIYSGKILADEKNMG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA-PTV 119
E ++ E F+VVM++K K + +A ++ + A +T + S TPA P
Sbjct: 58 EYEIKEKDFLVVMVSKPKAKKVESDKPVSADSSAQAAPAPASAAATGESALSATPAKPKA 117
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
P + S P AA A + PAP+ P ++S S Q S ++G+ LE V
Sbjct: 118 ESPATPAASTPAEAAGASSSNLPSTPAPSNGPTNASGSTGSLQTGS-FLSGAELETAVSS 176
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP--- 236
I++MG + +E V RA+R ++NNP+RAVEYL +G+P++TA P P
Sbjct: 177 IIEMG---FSKEDVQRAMRMSFNNPDRAVEYLMNGLPDETAAAPSRTTGVPATPATPSPA 233
Query: 237 PAQTQAQQPAAPAPTSGPNAN-PLDLFPQ-------------GLPNMGSNAGAGTLDFLR 282
P + + P PNA +LF Q GL G LD L
Sbjct: 234 PVTSMQETPTGAGAGRAPNAGQSGNLFEQAAAMQSGTNRASEGLLGEEDAQGRQILD-LG 292
Query: 283 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 342
N Q LRT+++ NP LQP++Q L + NP L + LR++ GEG +
Sbjct: 293 NPQVLSQLRTLLEQNPAALQPLVQALVQSNPQLAEAMSADPEGVLRML-----AGEG-LE 346
Query: 343 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 396
G+ + +P + E+R +E++ AMG +E +F C +N E+A Y +
Sbjct: 347 GEDSFEVPSLQQLADEDRTQVEQIVAMGIPERKAIESYFMCGRNLEMAVQYYFE 400
>gi|66363310|ref|XP_628621.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
gi|46229830|gb|EAK90648.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
Length = 362
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 128/404 (31%), Positives = 209/404 (51%), Gaps = 72/404 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++T++ T E+EV+ + + VK+ I+ + + V AS+ LI G++L D T++
Sbjct: 22 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 79
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E +VV+L+K GAS +A Q +S +
Sbjct: 80 DVGIKEGERLVVLLSK------GASQKAAESQQNKQNNTSNESNT--------------- 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ P A+ + A + P+ S AS L+ G+ LE T+ I
Sbjct: 119 -------NTDPAASATTSNIQAQSGNSDPSIDSR---------ASALLTGTELEKTITNI 162
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PVARASAGGQAGNPPA 238
++MG ++RE V RA+RAA+NNP+RAVEYL SG+P +P PVA P
Sbjct: 163 VNMG---FEREQVTRAMRAAFNNPDRAVEYLTSGLP----IPENPVA-----------PN 204
Query: 239 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 298
T + A + + DL + LP G L+ LR + FQ LR++VQ +P
Sbjct: 205 HTNITPVNSNASLNAGLTSSEDLSSEQLP--------GNLESLRTNPLFQQLRSVVQQDP 256
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQAVTVTP 357
+IL +L +G+ NP +++LI E+Q +F+R++ E + + +G+ + M + +TP
Sbjct: 257 RILPELLVRIGQSNPEILQLITENQEEFIRMM----ERTDSDEVGETSQFPMQTTIQLTP 312
Query: 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 401
+E E++ERL+A+GF R V+E + C KNEELAANYLL++ +F
Sbjct: 313 QEAESVERLQALGFPRNAVIEAYLICEKNEELAANYLLENSADF 356
>gi|323509241|dbj|BAJ77513.1| cgd7_4730 [Cryptosporidium parvum]
Length = 341
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 128/404 (31%), Positives = 209/404 (51%), Gaps = 72/404 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++T++ T E+EV+ + + VK+ I+ + + V AS+ LI G++L D T++
Sbjct: 1 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQEL--NPVMEASRLKLIFAGRILNDSQTVQ 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E +VV+L+K GAS +A Q +S +
Sbjct: 59 DVGIKEGERLVVLLSK------GASQKAAESQQNKQNNTSNESNT--------------- 97
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ P A+ + A + P+ S AS L+ G+ LE T+ I
Sbjct: 98 -------NTDPAASATTSNIQAQSGNSDPSIDSR---------ASALLTGTELEKTITNI 141
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PVARASAGGQAGNPPA 238
++MG ++RE V RA+RAA+NNP+RAVEYL SG+P +P PVA P
Sbjct: 142 VNMG---FEREQVTRAMRAAFNNPDRAVEYLTSGLP----IPENPVA-----------PN 183
Query: 239 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 298
T + A + + DL + LP G L+ LR + FQ LR++VQ +P
Sbjct: 184 HTNITPVNSNASLNAGLTSSEDLSSEQLP--------GNLESLRTNPLFQQLRSVVQQDP 235
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQAVTVTP 357
+IL +L +G+ NP +++LI E+Q +F+R++ E + + +G+ + M + +TP
Sbjct: 236 RILPELLVRIGQSNPEILQLITENQEEFIRMM----ERTDSDEVGETSQFPMQTTIQLTP 291
Query: 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 401
+E E++ERL+A+GF R V+E + C KNEELAANYLL++ +F
Sbjct: 292 QEAESVERLQALGFPRNAVIEAYLICEKNEELAANYLLENSADF 335
>gi|194913607|ref|XP_001982736.1| GG16385 [Drosophila erecta]
gi|190647952|gb|EDV45255.1| GG16385 [Drosophila erecta]
Length = 414
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 134/448 (29%), Positives = 204/448 (45%), Gaps = 93/448 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T++
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGPE-YVAEKQKLIYAGVILTDDRTVD 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS---QTPAP 117
V + F+VVMLT+ SS+ NQ S ST + S +
Sbjct: 60 SYNVDDKKFIVVMLTRDSSSSN---------PNQLSVKESDKLISTDDSKDSMPGEEANH 110
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATV 177
+ +P E + P+ P A A + S +A SNL+ G TV
Sbjct: 111 SNSPCTKNTEESVLPSETTPLSTDNLIGDLAQASLQS-------RAESNLLMGEEYNQTV 163
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 237
+++MG + RE V RA+ A+YNNPERAVEYL +GIPE+ + ++ NP
Sbjct: 164 LSMVEMG---YPREEVERAMAASYNNPERAVEYLINGIPEEEGTID----NGVNESTNPS 216
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
Q + + P + D F +FLR QF +R+++ N
Sbjct: 217 VIASGPQTVSASSVERPAESNSDPF----------------EFLRRQPQFLQMRSLIYQN 260
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE------------------GGEG 339
P +L +LQ++G+ NP L++LI E+Q FL ++N+P+E +G
Sbjct: 261 PHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIERESESSTTVPGVSSAGTHSTQG 320
Query: 340 NVLGQLASAMPQA--------------------------------VTVTPEEREAIERLE 367
NV +S + A + + ++++AIERL+
Sbjct: 321 NVSNLFSSDLGAASAQRSTAGTSAAQQSGSSAEHEDLEQPLGASTIRLNRQDQDAIERLK 380
Query: 368 AMGFDRALVLEVFFACNKNEELAANYLL 395
A+GF ALVL+ +FAC KNEELAAN+LL
Sbjct: 381 ALGFPEALVLQAYFACEKNEELAANFLL 408
>gi|347800665|ref|NP_001231653.1| UV excision repair protein RAD23 homolog B isoform 3 [Homo sapiens]
gi|119579420|gb|EAW59016.1| RAD23 homolog B (S. cerevisiae), isoform CRA_a [Homo sapiens]
Length = 337
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 134/356 (37%), Positives = 185/356 (51%), Gaps = 55/356 (15%)
Query: 73 MLTKSKVSSSGA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAP 130
M+TK K S+ A +T +APA+ TSS T Q T APT P P SA
Sbjct: 1 MVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASAT 60
Query: 131 PPAAPAPAPAP---APAPAPAPAPVS------------SSVSDVYGQAASNLVAGSNLEA 175
+ PAPA A PA PA PV+ SS S+++ A S LV G + E
Sbjct: 61 ASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYEN 120
Query: 176 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAG 230
V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++
Sbjct: 121 MVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGA 177
Query: 231 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 290
Q+ A +SG G P L+FLRN QFQ +
Sbjct: 178 PQSSAVAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQM 216
Query: 291 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNV 341
R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 217 RQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGG 276
Query: 342 LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 277 IAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 332
>gi|195172518|ref|XP_002027044.1| GL18167 [Drosophila persimilis]
gi|194112822|gb|EDW34865.1| GL18167 [Drosophila persimilis]
Length = 430
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 149/471 (31%), Positives = 224/471 (47%), Gaps = 109/471 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFTIEFDPEKTVLELKKKIFDERGVE-YVAEKQKLIYAGVILMDDRTIA 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAP---ANQAQTTSSAPPTSTQPTTTSQTPAP 117
K+ E F+VVMLT+ +S+ AS+ S N+A+ + + T +S + +
Sbjct: 60 SYKIDEKKFIVVMLTRDTAASTAASSTSDTQPKRTNEAEGKLFEKEKNIEKTISSTSGS- 118
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQ---------AASNLV 168
P ESAP + + A P SSS D+ G+ A SNL+
Sbjct: 119 --TPISGAVESAPSVSVSSTGTA-------IQRPYSSS--DLVGELANASLQTRAESNLL 167
Query: 169 AGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS 228
G TV +++MG + R+ V RA+ A++NNPERAVEYL +GIP + + +
Sbjct: 168 MGEEYNKTVLSMVEMG---YPRDQVERAMGASFNNPERAVEYLINGIPTEDE----SLFN 220
Query: 229 AGGQAGNPPAQTQAQQPAAPA--PTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQ 286
AG + N Q P AP P S P + LP S+ +FLR+ Q
Sbjct: 221 AGDETNN-------QNPRAPGSQPISEPAVD--------LPAQSSDP----FEFLRSQPQ 261
Query: 287 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG---------- 336
F +R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P+EG
Sbjct: 262 FLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIEGESASGNNTQR 321
Query: 337 ---------------------GEGNVLGQLASAMPQA----------------------- 352
EG V Q +SA A
Sbjct: 322 STPPRIQSFPTRTESLPSSATEEGPVANQRSSAGGIAADQLQRRDVADREVTEQSAGIAT 381
Query: 353 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+ + ++++AIERL+A+GF ALVL+ +FAC K+EELAAN+LL F+D
Sbjct: 382 IRLNAQDQDAIERLKALGFPEALVLQAYFACEKDEELAANFLLS--SSFDD 430
>gi|126002609|ref|XP_001352382.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
gi|54640152|gb|EAL29275.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
Length = 430
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 149/471 (31%), Positives = 224/471 (47%), Gaps = 109/471 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFTIEFDPEKTVLELKKKIFDERGVE-YVAEKQKLIYAGVILMDDRTIA 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAP---ANQAQTTSSAPPTSTQPTTTSQTPAP 117
K+ E F+VVMLT+ +S+ AS+ S N+A+ + + T +S + +
Sbjct: 60 SYKIDEKKFIVVMLTRDTAASTAASSTSDTQPKRTNEAEGKLFEKEKNIEKTISSTSGS- 118
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQ---------AASNLV 168
P ESAP + + A P SSS D+ G+ A SNL+
Sbjct: 119 --TPISGAVESAPSVSVSSTGTA-------IQRPYSSS--DLVGELANASLQTRAESNLL 167
Query: 169 AGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARAS 228
G TV +++MG + R+ V RA+ A++NNPERAVEYL +GIP + + +
Sbjct: 168 MGEEYNKTVLSMVEMG---YPRDQVERAMGASFNNPERAVEYLINGIPTEDE----SLFN 220
Query: 229 AGGQAGNPPAQTQAQQPAAPA--PTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQ 286
AG + N Q P AP P S P + LP S+ +FLR+ Q
Sbjct: 221 AGDETNN-------QNPRAPGSQPISEPAVD--------LPAQSSDP----FEFLRSQPQ 261
Query: 287 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG---------- 336
F +R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P+EG
Sbjct: 262 FLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIEGESASGNNTQR 321
Query: 337 ---------------------GEGNVLGQLASAMPQA----------------------- 352
EG V Q +SA A
Sbjct: 322 STPPRIQSFPTRTESLPSSATEEGPVANQRSSAGGIAADQLQRPDVADREVTEQSAGIAT 381
Query: 353 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+ + ++++AIERL+A+GF ALVL+ +FAC K+EELAAN+LL F+D
Sbjct: 382 IRLNAQDQDAIERLKALGFPEALVLQAYFACEKDEELAANFLLS--SSFDD 430
>gi|32402044|gb|AAP81008.1| RAD23-like protein B [Homo sapiens]
Length = 337
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 134/356 (37%), Positives = 185/356 (51%), Gaps = 55/356 (15%)
Query: 73 MLTKSKVSSSGA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAP 130
M+TK K S+ A +T +APA+ TSS T Q T APT P P SA
Sbjct: 1 MVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASAT 60
Query: 131 PPAAPAPAPA---PAPAPAPAPAPVS------------SSVSDVYGQAASNLVAGSNLEA 175
+ PAPA A PA PA PV+ SS S+++ A S LV G + E
Sbjct: 61 ASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYEN 120
Query: 176 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAG 230
V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++
Sbjct: 121 MVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGV 177
Query: 231 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 290
Q+ A +SG G P L+FLRN QFQ +
Sbjct: 178 PQSSAVAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQM 216
Query: 291 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNV 341
R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 217 RQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGG 276
Query: 342 LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 277 IAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQ 332
>gi|449546744|gb|EMD37713.1| hypothetical protein CERSUDRAFT_83454 [Ceriporiopsis subvermispora
B]
Length = 363
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 140/406 (34%), Positives = 211/406 (51%), Gaps = 47/406 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F I+ + D V+D+K+ I QG V Q +I+ GK+L D T+E
Sbjct: 1 MKLTVKTLQQKVFHIDAEGSDTVADIKQKISESQGHAV---ESQKIIYSGKILPDTKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
++ E F+V+M++K K +++ A++ S + + P T P+ P
Sbjct: 58 SCEIKEKDFLVLMVSKPKPTAAPAASSSTSTTTATPAPAVPSPAPTAPSPAPAATTPA-- 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ PP AP APAPA A ++ D+ S+ V G L+ ++Q +
Sbjct: 116 -------AVQPPNAPLLAPAPATPVAAPQPAQERALGDL-----SSFVTGDALQQSIQNM 163
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
++MG ++R+ V+RALRA++NNP+RAVEYL++GIP + A N
Sbjct: 164 IEMG---FERDQVMRALRASFNNPDRAVEYLFNGIPAHLEATAAGTPAP---APNLFQLA 217
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
Q QQ +G G P M G L L+N+ QFQ LR ++ NP +
Sbjct: 218 QQQQQQQQQQATG-----------GFPGM---PGGVDLAALQNNPQFQQLRQVIAQNPAL 263
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTP 357
+QP++Q+L NP +L+ ++ L + GEG+ G A+P + +TP
Sbjct: 264 VQPLIQQLAGANPQFAQLLAQNPEALLTALGL----GEGDFEGD-EGALPPGTHVINITP 318
Query: 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
EE+EAI+RLEA+GF R V+E +FAC+KNEELAANYL D FED
Sbjct: 319 EEQEAIQRLEALGFPRQAVIEAYFACDKNEELAANYLFD--SGFED 362
>gi|393911377|gb|EFO15597.2| UV excision repair protein Rad23 [Loa loa]
Length = 337
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 138/404 (34%), Positives = 193/404 (47%), Gaps = 89/404 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + KT+ FEIE+ P + +VK I +G YP Q LI+ GKVL D T+E
Sbjct: 1 MLITFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPIECQKLIYNGKVLDDAQTVE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + + FVV+M+ + K V A PA S+ P++ Q +Q T
Sbjct: 61 EVMIDPSKFVVIMIARKK-------PVGATPAE-----STPQPSNLQIPAAAQV---TTV 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P SV +++P AAP + P E T Q I
Sbjct: 106 TPASVTDNSP--AAPQNSDGLTPEQ----------------------------EETAQAI 135
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+ MG + R+ VIRALRA++ N +RAVEYL SGIPE+ + GG Q
Sbjct: 136 VAMG---YSRDKVIRALRASFFNGDRAVEYLCSGIPEEEDL--------GGH------QE 178
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
A+ G LDFLR QF+ LR +VQ+NP +
Sbjct: 179 SAEHEE-----------------------GERGQGLGLDFLRQLPQFEQLRELVQSNPAL 215
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA-SAMPQ---AVTVT 356
L ++Q++ + NP LM IQ +Q +F+ L+N G G G+++ SA Q A+ VT
Sbjct: 216 LPQIIQQIAQSNPALMEAIQNNQEEFVNLLNNGSVGSGGGGGGRVSPSAGEQRQVAIHVT 275
Query: 357 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
ER+AI RL++MGF LV+E +FAC+KNE+LAANY+L M E
Sbjct: 276 EAERDAINRLKSMGFPEQLVIEAYFACDKNEDLAANYILARMDE 319
>gi|406602239|emb|CCH46169.1| putative DNA repair protein RAD23-3 [Wickerhamomyces ciferrii]
Length = 394
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 144/435 (33%), Positives = 209/435 (48%), Gaps = 82/435 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K IE++P + V K+ + V+G +V Q ++ GKVL+D T+E
Sbjct: 1 MQVIFKDFKKEKIPIELEPTETVLQAKEKLAQVKGVEV---KQLKFVYSGKVLQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ + V+ M++K ++ PT P ++ TPAP
Sbjct: 58 STKIKADDQVIFMISK---------------------VAAKKPT---PAASTPTPAPAAQ 93
Query: 121 PPQSVPESAPPPAAPAPAPAPAPA-----PAPAPAPVSSSVSDVYGQAASNLVAGSNLEA 175
P Q +SAP + PAPAP+ P P+ P + D AS GS E
Sbjct: 94 PTQPTAQSAPVQPSTRTVPAPAPSSQSAQPTPSQQPEQAGDFD-----ASTFATGSAREK 148
Query: 176 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ-------------TAVP 222
+ I++MG ++R V +ALRAA+NNP+RAVEYL +GIPEQ TAV
Sbjct: 149 AIANIMEMG---YERPQVEQALRAAFNNPDRAVEYLLTGIPEQFQQQAQQSQPQPPTAVE 205
Query: 223 PVARASAGGQAGNPPAQTQAQQPAAPAPTS-GPNANPLDLFPQGLPNMGSNAGAGTLDFL 281
+ G G A QP+AP+ T A DLF G N G+G+
Sbjct: 206 ESGEQTEGSNTG-----ATATQPSAPSGTEEHSTAESGDLFAAAAAAAGGNPGSGSSPGA 260
Query: 282 RNSQQ-------FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI---- 330
+ +R +V+ NP++L+P+L++L +Q P L LIQ++ +F+ +I
Sbjct: 261 SHRTGGAPSGGGLDQIREIVRTNPEMLEPLLEQLSQQYPQLNGLIQQNPEEFINMILNGV 320
Query: 331 NEPVEGGEGNVLGQLASAMPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFAC 383
NE GEG LG PQA V +T E++ AI RL +GF+ L ++V+FAC
Sbjct: 321 NEDELSGEG--LG--TEVAPQAGEDGTVEVPITEEDQAAINRLVELGFESNLAIQVYFAC 376
Query: 384 NKNEELAANYLL-DH 397
+KNEELAAN L DH
Sbjct: 377 DKNEELAANILFNDH 391
>gi|237844371|ref|XP_002371483.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|95007044|emb|CAJ20260.1| DNA repair protein rad23 homolog b, putative [Toxoplasma gondii RH]
gi|211969147|gb|EEB04343.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|221501783|gb|EEE27543.1| UV excision repair protein rhp23, putative [Toxoplasma gondii VEG]
Length = 380
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 131/405 (32%), Positives = 205/405 (50%), Gaps = 31/405 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL E+EV E+ V +VK+ +E Q PA++Q L+H GK+L D ++
Sbjct: 1 MKLRIRTLSNEEAELEVGAEETVLNVKEKVE--QRWPHMPAARQKLVHAGKILADAQKIK 58
Query: 61 E-NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + + EN +VVM+TK+ + +S+ +A+ A + + S T + T
Sbjct: 59 DCSALKENDRLVVMVTKAVSQPAVSSSTAASAAPASAASPSPAETQRGSSAAGSTAGDGE 118
Query: 120 APPQSVPESAPPPAAPAPAPA-PAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQ 178
+ P + + + PA PA A +P+ AP ++S A S L G LE T+
Sbjct: 119 SAKSETPGGSGNASGNSGGPANPAHASSPSSAPDATSEGLSRAAAESALFTGPQLEETLT 178
Query: 179 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 238
++ MG + R A+RAA+NNP+RAVEYL +G+P P A GG + A
Sbjct: 179 HLVAMG---FPRSQAEEAMRAAFNNPDRAVEYLMNGMP------PEVSAMLGGDS----A 225
Query: 239 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 298
+TQ P + D P G LR+ F +R MVQANP
Sbjct: 226 ETQEAHGDVPPEEGDAEGDEDDENPLGA--------------LRHHPAFNQIRQMVQANP 271
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 358
+L +LQ +G NP L+ LI ++Q FL ++ GE G A P + +T E
Sbjct: 272 AMLPQVLQLIGNSNPQLLELITQNQDAFLEMLQSDQGEGETGAAGTGGFAAPGIIQMTAE 331
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
E EA++RLE++GF R +E + AC++NEE+AANYL +++++ D
Sbjct: 332 EMEALQRLESLGFSRHQAVEAYLACDRNEEMAANYLFENLNDLGD 376
>gi|187117168|ref|NP_001119685.1| rad23 protein [Acyrthosiphon pisum]
gi|89473754|gb|ABD72689.1| putative RAD23-like B [Acyrthosiphon pisum]
gi|239788640|dbj|BAH70991.1| ACYPI000077 [Acyrthosiphon pisum]
Length = 347
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 129/399 (32%), Positives = 200/399 (50%), Gaps = 62/399 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K L+ F++E+ + V +K+ ++ +GS+ Y A Q LI+ GK+L D T +
Sbjct: 1 MLITFKNLQQHTFKLEIDSDQTVRQLKEKLQAEKGSE-YLAENQKLIYAGKILSDDTKIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + FVVVM+ SK + + +T + A+ A TS + ST +T PA
Sbjct: 60 DCNIDSKKFVVVMV--SKATGAVTATSATNTASAASATSVSDTKSTPSVSTPMIPADN-- 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
S+P + P P+P A P ++ASN E T+Q I
Sbjct: 116 --SSIPIAQPRVVEQLPSPVETRASEP--------------ESASN----DETERTIQNI 155
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA---RASAGGQAGNPP 237
+DMG ++R V ALRA++NNP+RAVEYL +GIP++ P R+ +G+
Sbjct: 156 MDMG---YERPQVEEALRASFNNPDRAVEYLLTGIPQELLTDPTISPNRSVLSEDSGDLS 212
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
+Q P + P L FLRN FQ +RT+VQ N
Sbjct: 213 GSSQV-------PATDP-----------------------LAFLRNQPTFQQMRTVVQQN 242
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLAS-AMPQAVTVT 356
P++L +LQ++G+ NP L+++I +Q F+R++NEP EG A V V+
Sbjct: 243 PELLNSVLQQIGQTNPALLQMISNNQEAFVRMLNEPNEGAAAAPAAASRGPADGFEVPVS 302
Query: 357 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+++EAI+RL+A+GF V++ +FAC KNE +AAN LL
Sbjct: 303 TQDKEAIDRLKALGFPEHQVVQAYFACEKNENMAANLLL 341
>gi|297286975|ref|XP_001085658.2| PREDICTED: UV excision repair protein RAD23 homolog B [Macaca
mulatta]
Length = 406
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 147/431 (34%), Positives = 212/431 (49%), Gaps = 58/431 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ + + P + Q LI+ G++L D L+
Sbjct: 1 MQVTLKTLQPQSFKIDIDPEETVKALKEKIESEKAKEASPVAGQKLIYAGEILNDDAALK 60
Query: 61 ENKVAENSFVV--VMLTKSKVSSS--GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
E K+ E FVV VM+TK K S+ A+T +APA+ TSS T Q T A
Sbjct: 61 EYKIDEKIFVVVMVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVLALA 120
Query: 117 PTVAPPQSVPESAPPPAAPAPAPA---PAPAPAPAPAPVS------------SSVSDVYG 161
T P P S + PAPA A A PA PV+ SS S+++
Sbjct: 121 TTFTPAFITPVSVTVSSEPAPASATKQKKAAEKPAETPVATRLTSTDCTLXDSSWSNLFE 180
Query: 162 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQ 218
A S LV G E V +I MG ++ E VI A RA++ N +RAVE L GIP Q
Sbjct: 181 DATSALVTGQPYENMVTEITPMG---YEXEQVIAAPRASFKNLDRAVECLVMGIPGVKXQ 237
Query: 219 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 278
V P AS G + A A A +SG + L
Sbjct: 238 VVVDPHQAASTGVPQSSTLAAVAATTTATTTTSSGXHP---------------------L 276
Query: 279 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 338
+FL N QFQ +R ++Q N +L +LQ +G +NP L++ I +H+ F++++NEPV +
Sbjct: 277 EFLWNQPQFQQMRQIIQQNTSLLPALLQXIGGENPQLLQQISQHKEHFIQMLNEPVXEAD 336
Query: 339 GNVLGQLASAMPQA---------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389
G G + A + VTP+E+EAIER G LV++ +FAC KN+ L
Sbjct: 337 GRGGGGGGGSGGIAEPGNGPMNYIQVTPQEKEAIER---XGIPEGLVIQAYFACEKNKNL 393
Query: 390 AANYLLDHMHE 400
AA++LL +
Sbjct: 394 AADFLLQQTFD 404
>gi|194225605|ref|XP_001916027.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Equus caballus]
Length = 336
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 159/303 (52%), Gaps = 41/303 (13%)
Query: 112 SQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSV----SDVYGQAASNL 167
S TPA T A + P SA PA PA AP + S+S S+++ A S L
Sbjct: 53 SITPASTTASSEPAPASATKQEKPAEKPAEAPVATSPTSTDSTSGDSSRSNLFEDATSAL 112
Query: 168 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPP 223
V G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P
Sbjct: 113 VTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP 169
Query: 224 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 283
AS G + A +SG G P L+FLRN
Sbjct: 170 PPAASTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----------LEFLRN 208
Query: 284 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------ 337
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 209 QPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGG 268
Query: 338 ---EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 394
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+L
Sbjct: 269 GGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFL 328
Query: 395 LDH 397
L
Sbjct: 329 LQQ 331
>gi|315049547|ref|XP_003174148.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
gi|311342115|gb|EFR01318.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
Length = 380
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 149/419 (35%), Positives = 220/419 (52%), Gaps = 57/419 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P +K+ DVK+ I T +G +PASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSEKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K ++ A+ S++ A + P T + P +
Sbjct: 58 SYSIEEKGFIVCMVSKPKAAAPSAAAASSSQTPAAAPPAPTPATPSAPARVN-------- 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
APP PA P+PA S + S S L+ G+ + + Q+
Sbjct: 110 --------APPLQTPA-------TPSPAGGASSGASSGATFNDPSALLMGNQGQEAITQM 154
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
L MG + R + RA+RAAY NP+RA+EYL +GIP++ P SA PA T
Sbjct: 155 LAMG---FSRGDIDRAMRAAYFNPDRAIEYLLNGIPDE---PEREAPSAPAAGSARPAAT 208
Query: 241 QA-------------QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF 287
+ +Q AA A G + G + S G+L+FLRN+ F
Sbjct: 209 EGASESQVQESLNLFEQAAAQASGGGSGRSRGAGAGAGAGSGESAGSLGSLEFLRNNPHF 268
Query: 288 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLAS 347
Q LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E V+ +
Sbjct: 269 QQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVDD---------ET 319
Query: 348 AMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+P Q+++VT EER+AIERL +GF R V++ +FAC+KNEELAAN+L D E ED
Sbjct: 320 QLPPGAQSISVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAANFLFDQPDENED 378
>gi|317138690|ref|XP_001817078.2| UV excision repair protein rhp23 [Aspergillus oryzae RIB40]
gi|391863231|gb|EIT72542.1| nucleotide excision repair factor NEF2, RAD23 component
[Aspergillus oryzae 3.042]
Length = 378
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 148/435 (34%), Positives = 212/435 (48%), Gaps = 90/435 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D +E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K SSS A T S AP+ ++ +S P P ++ A
Sbjct: 58 SYNIEEKGFIVCMVSKPKASSSTA-TPSQAPSTPSRAATSTPAAPPAPAPSTNASATAPP 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
S + P SD S L++GS EA + +
Sbjct: 117 ATPSPAAATQP-------------------------SDAAFNDPSALLSGSQGEAVISHM 151
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV------------------- 221
MG + R+ + RA+RAA+ NP RA+EYL +GIPE
Sbjct: 152 ESMG---FPRDDINRAMRAAFFNPTRAIEYLLNGIPENIQQEQEQQQQQQQAATATAASP 208
Query: 222 -PPVARASAGGQAGNPPAQTQAQQP------AAPAPT-SGPNANPLDLFPQGLPNMGSNA 273
PP A A GN PA T ++P AA A T GP+ GS A
Sbjct: 209 QPPAASA-----GGNAPATTGGEEPVNLFEAAAQAGTQEGPHG----------ARSGSAA 253
Query: 274 GAG--TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 331
G G LDFLRN+ FQ LR +VQ PQ+L+P+LQ++ NP + +LI +++ FL+L++
Sbjct: 254 GEGLPNLDFLRNNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLS 313
Query: 332 EPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 388
E +G A+P + VT EER+AIERL +GF R +V+E +FAC+KNEE
Sbjct: 314 EEGDG-----------ALPPGTHQIHVTEEERDAIERLCRLGFSRDMVIEAYFACDKNEE 362
Query: 389 LAANYLLDHMHEFED 403
LAAN+L ++ + ED
Sbjct: 363 LAANFLFENTDDPED 377
>gi|50550853|ref|XP_502899.1| YALI0D16401p [Yarrowia lipolytica]
gi|49648767|emb|CAG81090.1| YALI0D16401p [Yarrowia lipolytica CLIB122]
Length = 359
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 130/408 (31%), Positives = 203/408 (49%), Gaps = 60/408 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVK-KNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
M V ++ K + ++V+P D V +K KN E G D Y Q +I+ GK+L + T++
Sbjct: 1 MLVKLRDTKRQQWTVDVEPSDTVETLKTKNAE---GKD-YGVGDQKMIYSGKILANTTSI 56
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + E++F++ M++K KV ++ A+ +AAP A + P T+ P
Sbjct: 57 ESLNLKEDAFIICMISKPKVKAAAAAPAAAAPVAAAPAAAEPAVAPVTPATSRSVATP-- 114
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
AP + P A A S+ D+ ++ A + + +
Sbjct: 115 --------GAPTNSGNVVGNTETPTTGGADA---STTGDIGAESGPAASATAAVTTAINN 163
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
++DMG + R+ V A+RAAYNNPERAVEYL +GIP+
Sbjct: 164 MVDMG---YPRDQVEAAMRAAYNNPERAVEYLLTGIPDHVI------------------- 201
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG----TLDFLRNSQQFQALRTMVQ 295
++ P S + DLF + + G A LDFLR++ QF +R MVQ
Sbjct: 202 --GEEADDDVPESNTDT---DLFAEAVAQQGQGASVAPNTSALDFLRDNPQFIEMRRMVQ 256
Query: 296 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT- 354
P +L+P++Q+L NP L LI ++ FL L+ E +E + + +P+ T
Sbjct: 257 QQPHLLEPLIQQLAASNPQLAALITQNSEAFLHLLGEGLE--------EGSGGVPEGTTE 308
Query: 355 --VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
VTPEE +AIERL A+GF+R LV++ +FAC+KNEE+ ANYLL+H ++
Sbjct: 309 IQVTPEESDAIERLAALGFERNLVIQAYFACDKNEEVTANYLLEHGYD 356
>gi|195354361|ref|XP_002043666.1| GM26792 [Drosophila sechellia]
gi|194128854|gb|EDW50897.1| GM26792 [Drosophila sechellia]
Length = 414
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 132/448 (29%), Positives = 202/448 (45%), Gaps = 93/448 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +GS+ Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGSE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V E F+VVMLT+ S + NQ S TST + S
Sbjct: 60 SYNVDEKKFIVVMLTRDS---------SYSNRNQLSVKESDKLTSTDDSRHSM------- 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPV---SSSVSDVYGQAASNLVAGSNLEATV 177
P + S P + P P+ + + + +A SNL+ G TV
Sbjct: 104 PCEEANHSNSPSCRNTDDSVLSRETRPLPSDELIGELAQASLQSRAESNLLMGDEYNQTV 163
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 237
+++MG + RE V RA+ A+YNNPERAVEYL +GIP + + ++ NP
Sbjct: 164 LSMVEMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGT----FYNGLNESTNPS 216
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
Q A+ T P +++ + +FLR+ QF +R+++ N
Sbjct: 217 LIPSGPQTASATSTERP----------------ADSNSDPFEFLRSQPQFLQMRSLIYQN 260
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-------------------- 337
P +L +LQ++G+ NP L++LI E+Q FL ++N+P+E
Sbjct: 261 PHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIERESESVATVPHVSNARTPSTLD 320
Query: 338 ---------EGNVLGQLASAMPQA---------------------VTVTPEEREAIERLE 367
EG Q ++A A + + ++++AIERL+
Sbjct: 321 NVSLFSPDLEGATSAQRSTAGTSAAQQIGSAADNEDLEQPLGVSTIRLNRQDKDAIERLK 380
Query: 368 AMGFDRALVLEVFFACNKNEELAANYLL 395
A+GF ALVL+ +FAC KNEE AAN+LL
Sbjct: 381 ALGFPEALVLQAYFACEKNEEQAANFLL 408
>gi|170590706|ref|XP_001900112.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
gi|158592262|gb|EDP30862.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
Length = 354
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 135/405 (33%), Positives = 184/405 (45%), Gaps = 96/405 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V KT+ FEIE+ P + +VK I +G YP Q LI+ GKVL D T+E
Sbjct: 23 MLVTFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPTECQKLIYNGKVLDDAQTVE 82
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + + FVVVM+ + K P A
Sbjct: 83 EVMIDPSKFVVVMIARKK--------------------------------------PIGA 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNL----EAT 176
P +S P+ P+ PA A V+++ V S +L E T
Sbjct: 105 PVESTPQ-------------PSNLQIPAGAQVTTAPVSVADSGPSTPQNPDDLTPEQEET 151
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
Q I+ MG + R+ VIRALRA++ N +RAVEYL SGIPE+ + GG
Sbjct: 152 AQAIVAMG---YPRDKVIRALRASFFNGDRAVEYLCSGIPEEEDL--------GGH---- 196
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
Q A+ G A LDFLR QF+ LR +VQ+
Sbjct: 197 --QESAEHEE-----------------------GERAQGLGLDFLRQLPQFEQLRELVQS 231
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ-AVTV 355
NP IL ++Q++ + NP LM IQ +Q +F+ L+N G + A Q A+ V
Sbjct: 232 NPAILPQIIQQIAQSNPALMEAIQNNQEEFVNLLNNGSVSSGGGGVAPSAGEQRQVAIHV 291
Query: 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
T ER+AI RL++MGF LV+E +FAC+KNE+LAANY+L M E
Sbjct: 292 TEAERDAINRLKSMGFPEQLVIEAYFACDKNEDLAANYILARMDE 336
>gi|83764932|dbj|BAE55076.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 403
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 148/435 (34%), Positives = 211/435 (48%), Gaps = 90/435 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
V VK LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D +E
Sbjct: 26 FNVAVKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIE 82
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K SSS A T S AP+ ++ +S P P ++ A
Sbjct: 83 SYNIEEKGFIVCMVSKPKASSSTA-TPSQAPSTPSRAATSTPAAPPAPAPSTNASATAPP 141
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
S + P SD S L++GS EA + +
Sbjct: 142 ATPSPAAATQP-------------------------SDAAFNDPSALLSGSQGEAVISHM 176
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV------------------- 221
MG + R+ + RA+RAA+ NP RA+EYL +GIPE
Sbjct: 177 ESMG---FPRDDINRAMRAAFFNPTRAIEYLLNGIPENIQQEQEQQQQQQQAATATAASP 233
Query: 222 -PPVARASAGGQAGNPPAQTQAQQP------AAPAPT-SGPNANPLDLFPQGLPNMGSNA 273
PP A A GN PA T ++P AA A T GP+ GS A
Sbjct: 234 QPPAASA-----GGNAPATTGGEEPVNLFEAAAQAGTQEGPHG----------ARSGSAA 278
Query: 274 GAG--TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 331
G G LDFLRN+ FQ LR +VQ PQ+L+P+LQ++ NP + +LI +++ FL+L++
Sbjct: 279 GEGLPNLDFLRNNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLS 338
Query: 332 EPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 388
E +G A+P + VT EER+AIERL +GF R +V+E +FAC+KNEE
Sbjct: 339 EEGDG-----------ALPPGTHQIHVTEEERDAIERLCRLGFSRDMVIEAYFACDKNEE 387
Query: 389 LAANYLLDHMHEFED 403
LAAN+L ++ + ED
Sbjct: 388 LAANFLFENTDDPED 402
>gi|350634058|gb|EHA22422.1| hypothetical protein ASPNIDRAFT_204514 [Aspergillus niger ATCC
1015]
Length = 369
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 145/417 (34%), Positives = 217/417 (52%), Gaps = 63/417 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K +SSG T+S AP TP+ V
Sbjct: 58 SYNIEEKGFIVCMVSKPKATSSG-------------TSSQAP----------STPSRAVT 94
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ P + P AA P+ P+PA A S + + S L++G+ EA V Q+
Sbjct: 95 STPAAPPAPAPSAASTTPAVPS-TPSPAAAGTSQAQGSAFNDP-SALLSGTQSEAVVAQM 152
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
MG + R V RA+RAA+ NP+RA+EYL +GIPE +A+A + ++
Sbjct: 153 EAMG---FARSDVNRAMRAAFFNPDRAIEYLLNGIPENIQQEQQQQAAAASAPQSAAPES 209
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-----------TLDFLRNSQQFQA 289
AP++G + P++LF G G +L+FLRN+ FQ
Sbjct: 210 --------APSAGDD-EPVNLFEAAAQAGGQEGGGRGARAAGGAELPSLEFLRNNPHFQQ 260
Query: 290 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAM 349
LR +VQ PQ+L+P+LQ++ NP + +LI +++ FL+L++E + E A+
Sbjct: 261 LRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEPDDDE---------AL 311
Query: 350 PQAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
P T VT EER+AIERL +GF R LV++ +FAC+KNEELAANYL ++ + ED
Sbjct: 312 PPGTTQIHVTEEERDAIERLCRLGFSRDLVIQAYFACDKNEELAANYLFENPDDPED 368
>gi|312095801|ref|XP_003148472.1| UV excision repair protein Rad23 containing protein [Loa loa]
Length = 341
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 141/415 (33%), Positives = 197/415 (47%), Gaps = 97/415 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPED-----------KVSDVKKNIETVQGSDVYPASQQMLIHQ 49
M + KT+ FEIE+ P K+ +VK I +G YP Q LI+
Sbjct: 1 MLITFKTIAQVSFEIELDPHLTVYFWSNVVLPKIGEVKAKIAEEKGEVEYPIECQKLIYN 60
Query: 50 GKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPT 109
GKVL D T+EE + + FVV+M+ + K V A PA S+ P++ Q
Sbjct: 61 GKVLDDAQTVEEVMIDPSKFVVIMIARKK-------PVGATPAE-----STPQPSNLQIP 108
Query: 110 TTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVA 169
+Q T P SV +++P AP +S +SD G
Sbjct: 109 AAAQV---TTVTPASVTDNSPA------------------APQNSGISD--GLTPEQ--- 142
Query: 170 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 229
E T Q I+ MG + R+ VIRALRA++ N +RAVEYL SGIPE+ +
Sbjct: 143 ----EETAQAIVAMG---YSRDKVIRALRASFFNGDRAVEYLCSGIPEEEDL-------- 187
Query: 230 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 289
GG Q A+ G LDFLR QF+
Sbjct: 188 GGH------QESAEHEE-----------------------GERGQGLGLDFLRQLPQFEQ 218
Query: 290 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA-SA 348
LR +VQ+NP +L ++Q++ + NP LM IQ +Q +F+ L+N G G G+++ SA
Sbjct: 219 LRELVQSNPALLPQIIQQIAQSNPALMEAIQNNQEEFVNLLNNGSVGSGGGGGGRVSPSA 278
Query: 349 MPQ---AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
Q A+ VT ER+AI RL++MGF LV+E +FAC+KNE+LAANY+L M E
Sbjct: 279 GEQRQVAIHVTEAERDAINRLKSMGFPEQLVIEAYFACDKNEDLAANYILARMDE 333
>gi|296418227|ref|XP_002838743.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634704|emb|CAZ82934.1| unnamed protein product [Tuber melanosporum]
Length = 385
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 143/419 (34%), Positives = 211/419 (50%), Gaps = 63/419 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P D +S VK+ I +G D A+ Q LI+ GK+L+D T+
Sbjct: 1 MKLTFKDLKQQKFVIDAEPTDTISQVKEKINKEKGWD---AAAQKLIYSGKILQDDKTVG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+ E FVV M +S P + ++++ +++ P TPA +
Sbjct: 58 DYKIEEKGFVVCM-------------ISNKPKAASSSSAAGSSSASTPVKAPSTPAQSSV 104
Query: 121 PPQ-SVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
PP S P A ++ + + A P PA A G+
Sbjct: 105 PPTPSAPAQAVTGSSTSTSAAVPETPTPAGA------------------VGTTFNDPEDA 146
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA----GGQAGN 235
I++M G ++R + RA+RAA+ NP+RAV+YL +GIPE A++S A +
Sbjct: 147 IVNMMGMGFERSEIERAMRAAFFNPDRAVDYLLNGIPEHLTQERPAQSSTTRPAAQSAQS 206
Query: 236 PPAQTQAQQPAAPAPTSGPNANP--LDLFPQ---------GLPNMGSNAGA---GTLDFL 281
A PA SG A P ++LF G + G + GA G LDFL
Sbjct: 207 AARPAAATAPATGGSASGEGAEPENINLFEAAAAAASQRGGAHSQGRSGGAASLGNLDFL 266
Query: 282 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV 341
RN+ QFQ LR +VQ PQ+L+P+LQ++G NP L I + FLRL++E +G
Sbjct: 267 RNNPQFQQLRQVVQQQPQMLEPILQQVGMGNPQLAATISSNPEAFLRLLSEDPADEDG-- 324
Query: 342 LGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
A+P ++VTPEE +AIERL +GFDR +V++ +FAC+KNEELAAN+L +
Sbjct: 325 -----GALPPGSNHISVTPEESDAIERLCRLGFDRDMVIQAYFACDKNEELAANFLFEQ 378
>gi|426219746|ref|XP_004004079.1| PREDICTED: UV excision repair protein RAD23 homolog B [Ovis aries]
Length = 336
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 154/302 (50%), Gaps = 42/302 (13%)
Query: 109 TTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLV 168
TT S PAP SV + P P P + SS S+++ A S LV
Sbjct: 59 TTASSEPAPA-----SVTKQEKPAERPVETPVATTPTSTDSTSGDSSRSNLFEDATSALV 113
Query: 169 AGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPV 224
G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P
Sbjct: 114 TGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP 170
Query: 225 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 284
AS G + A +SG G P L+FLRN
Sbjct: 171 PTASTGAPQSSVAAAAATTTATTTTASSG-----------GHP----------LEFLRNQ 209
Query: 285 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------- 337
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 210 PQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGG 269
Query: 338 --EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 270 GGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 329
Query: 396 DH 397
Sbjct: 330 QQ 331
>gi|344228919|gb|EGV60805.1| hypothetical protein CANTEDRAFT_137273 [Candida tenuis ATCC 10573]
gi|344228920|gb|EGV60806.1| UV excision repair protein Rad23 [Candida tenuis ATCC 10573]
Length = 356
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 126/408 (30%), Positives = 193/408 (47%), Gaps = 68/408 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K I+V+ +D V K+ + + + DV SQ ++ GKVL D +L
Sbjct: 1 MQITFKDFKKQKLTIDVEVDDTVLKTKETVASQKSCDV---SQLKFVYSGKVLADDQSLG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E ++ M++K+K +P
Sbjct: 58 SYKIKEGDSIIYMISKAK----------------------------KPV----------- 78
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAP-APAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
VP + PP AA + + A P AP P +++V+ V +A S GS EAT+Q
Sbjct: 79 ----VPVAEPPTAATTGDSSESAASEPVAPTPSATTVAPVSEEAGSAFAQGSEREATIQN 134
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVARASAGGQAGNPP 237
I++MG +DR+ V +ALRAA+NNP RAVEYL +GIPE Q V P A
Sbjct: 135 IMEMG---YDRDQVEQALRAAFNNPHRAVEYLLTGIPESLQQPVEPPTAVEEDVDATPVA 191
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT----LDFLRNSQQFQALRTM 293
A+T TS N N LF ++AG G + L ++ Q Q LR
Sbjct: 192 AETTQDDKDHDHDTSDRNVN---LFEAAAAANNASAGEGDASDPVGELDDAAQLQLLREA 248
Query: 294 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA- 352
+Q NP+++ +L+++ + NPH+ +LIQ+ F IN+ G AM +
Sbjct: 249 IQTNPELIHELLEQISRSNPHIAQLIQQDPEGF---INQFFGAGAEEGFEIDDEAMEEGE 305
Query: 353 -----VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ ++ E++ AI RL +GFDR LV++V+ AC+KNEE+AA+ L
Sbjct: 306 DAGVRIEISEEDQSAINRLCELGFDRNLVIQVYMACDKNEEVAADILF 353
>gi|324513075|gb|ADY45389.1| UV excision repair protein RAD23 A [Ascaris suum]
Length = 348
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 136/407 (33%), Positives = 190/407 (46%), Gaps = 83/407 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KT+ F +EV P + ++K I +G YP Q LI+ GK+L D T+E
Sbjct: 1 MKITFKTISQVTFHVEVDPSITIGELKAKIAEQEGQLEYPVDGQKLIYNGKILDDAQTVE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ F+VVM+ + K A+ + PA A +A ST+ T
Sbjct: 61 ELKIDAAKFIVVMVARKKAPPPAANAPESTPATPAVEEGAASVPSTEAVT---------- 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+AP A + A A P E TVQ I
Sbjct: 111 -------AAPTGTAQPAPQQASAAAPDALTP--------------------EQEETVQAI 143
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+ MG + R+ VIRALRAA+ N +RAVEYL + IP++ + GQ A+
Sbjct: 144 VAMG---YPRDRVIRALRAAFFNGDRAVEYLCTEIPDEEEL--------AGQHDEGEAEE 192
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
A + +A QG L+FLR QF+ LR +VQ+NP I
Sbjct: 193 SAGEESA----------------QG------------LEFLRQLPQFEQLRELVQSNPAI 224
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP-----VEGGEGNVLGQLASAMPQ--AV 353
L ++Q++ + NP LMR IQ +Q F+ L+N P +GG A A P+ A+
Sbjct: 225 LPQIIQQIAQSNPALMRAIQSNQEQFVNLLNAPSTEGGGQGGAAPGGAPQAHAQPRGIAI 284
Query: 354 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
VT ER+AI RL+AMGF LV+E +FAC+KNE+LA NY+L M E
Sbjct: 285 EVTAAERDAINRLKAMGFPEQLVIEAYFACDKNEDLAVNYILARMDE 331
>gi|121712652|ref|XP_001273937.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
gi|119402090|gb|EAW12511.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
Length = 383
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 146/419 (34%), Positives = 218/419 (52%), Gaps = 65/419 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V SQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---SQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K +S+ A T S AP T ++ ++ P A
Sbjct: 58 TYNIEEKGFIVCMVSKPKATSAAA------------TPSQAPSTPSRAVASTPAAPPAPA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P + A P APA A P V S L++G+ EA V Q+
Sbjct: 106 PSAATSTPAVPATPSPAAPAQPSADTP-----------VAFNDPSALLSGAQSEAVVAQM 154
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE----QTAVPPVARASAGGQAGNP 236
MG + R + RA+RAA+ NP+RA+EYL +GIPE + + + G A +P
Sbjct: 155 ESMG---FPRSDINRAMRAAFFNPDRAIEYLLNGIPETIHQEQQQQQQQQQAGAGAAASP 211
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG---------------TLDFL 281
PA + + P+ T G P++LF + G+ GAG L+FL
Sbjct: 212 PAPSAPSGESVPSSTGGDE--PVNLF-EAAAQAGTGEGAGRGARAGVEGAGEALPNLEFL 268
Query: 282 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV 341
RN+ FQ LR +VQ PQ+L+P+LQ++ NP + +LI +++ FL+L++E +G
Sbjct: 269 RNNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEDDG----- 323
Query: 342 LGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
A+P A++VT EER+AIERL +GF R LV++ +FAC+KNEELAANYL ++
Sbjct: 324 ------ALPPGTHAISVTEEERDAIERLCRLGFSRDLVIQAYFACDKNEELAANYLFEN 376
>gi|217069976|gb|ACJ83348.1| unknown [Medicago truncatula]
Length = 159
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/170 (62%), Positives = 122/170 (71%), Gaps = 11/170 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D +S VKKNIETVQG DVYPA+QQMLIHQGKVLKD TTLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTISAVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
ENKVAENSF+V+ML+KSK +S ST S AP +A TS+AP T P V+
Sbjct: 61 ENKVAENSFIVIMLSKSKPASGKGSTTSNAPPAKAPQTSAAP-----------TSTPPVS 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAG 170
P + P A AP+PAPAPAP + ++ SDVYGQAASNLVAG
Sbjct: 110 VSPQAPAATAAPPASVAAPSPAPAPAPISSATATEGSDVYGQAASNLVAG 159
>gi|238503490|ref|XP_002382978.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
gi|220690449|gb|EED46798.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
Length = 439
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 143/419 (34%), Positives = 209/419 (49%), Gaps = 72/419 (17%)
Query: 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAEN 67
LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D +E + E
Sbjct: 69 LKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKAIESYNIEEK 125
Query: 68 SFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPE 127
F+V M++K K SSS A T S AP+ ++ +S P P ++ A S
Sbjct: 126 GFIVCMVSKPKASSSTA-TPSQAPSTPSRAATSTPAAPPAPAPSTNASATAPPATPSPAA 184
Query: 128 SAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGS 187
+ P SD S L++GS EA + + MG
Sbjct: 185 ATQP-------------------------SDAAFNDPSALLSGSQGEAVISHMESMG--- 216
Query: 188 WDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAA 247
+ R+ + RA+RAA+ NP RA+EYL +GIPE + + Q A A P
Sbjct: 217 FPRDDINRAMRAAFFNPTRAIEYLLNGIPEN-----IQQEQEQQQQQQQAATATAASPQP 271
Query: 248 PAPTSGPNA-------NPLDLF-----------PQGLPNMGSNAGAG--TLDFLRNSQQF 287
PA ++G NA P++LF P G GS AG G LDFLRN+ F
Sbjct: 272 PAASAGGNAPATTGGEEPVNLFEAAAQAGTQEGPHGA-RSGSAAGEGLPNLDFLRNNPHF 330
Query: 288 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLAS 347
Q LR +VQ PQ+L+P+LQ++ NP + +LI +++ FL+L++E +G
Sbjct: 331 QQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEGDG----------- 379
Query: 348 AMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
A+P + VT EER+AIERL +GF R +V+E +FAC+KNEELAAN+L ++ + ED
Sbjct: 380 ALPPGTHQIHVTEEERDAIERLCRLGFSRDMVIEAYFACDKNEELAANFLFENTDDPED 438
>gi|295665738|ref|XP_002793420.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278334|gb|EEH33900.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 375
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 145/420 (34%), Positives = 203/420 (48%), Gaps = 75/420 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G DV + Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M+TK K ++ A T+S AP T ++ +
Sbjct: 58 SYNIEEKGFIVCMVTKPKTTTPAA------------TSSQAPSTPAPAVASTPAAPAPAS 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PQ+ A A A A P S L+ G E + Q+
Sbjct: 106 NPQTTDAPATTSPAAPAAAGGATFNDP-----------------SALLMGPQGEQVIAQM 148
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
MG + R + RA+RAA+ NP+RA+EYL +GIPE S Q PA T
Sbjct: 149 ESMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGIPE---------TSQAEQREAAPATT 196
Query: 241 QAQQPAAPAPTSGPNANPLDLFP---------------------QGLPNMGSNAGA--GT 277
PAAPA T G ++LF QGL G G
Sbjct: 197 APSGPAAPAATGGDEH--VNLFEAAAQAGAPQGGGAGRGARATGQGLATAAEGQGGSLGN 254
Query: 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 337
LDFLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E +E
Sbjct: 255 LDFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIEDD 314
Query: 338 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
QL Q +TVT EER+AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 315 -----AQLPPGTHQ-ITVTEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFEQ 368
>gi|240273069|gb|EER36592.1| pre-mRNA-splicing factor cwc24 [Ajellomyces capsulatus H143]
Length = 826
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 146/419 (34%), Positives = 209/419 (49%), Gaps = 64/419 (15%)
Query: 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAEN 67
LK F IE +P + V VK+ I +G DV +QQ LI+ GK+L+D T+E + E
Sbjct: 448 LKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIESYNIEEK 504
Query: 68 SFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPE 127
F+V M++K K + S ++ VS+ + +++ P + + T T P + P
Sbjct: 505 GFIVCMVSKPKPAPSTSAGVSSQAPSTPAPAAASTPAAAAHRSNPLTSDITATPSPAAPV 564
Query: 128 SAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGS 187
AP S++ +D S L+ G E V Q+ MG
Sbjct: 565 VAPVAGG------------------STTFND-----PSALLMGPQGEQVVAQMESMG--- 598
Query: 188 WDRETVIRALRAAYNNPERAVEYLYSGIPE---------------------QTAVPPVAR 226
+ R + RA+RAAY NP+RA+EYL +GIPE TA PP
Sbjct: 599 FPRSDIDRAMRAAYFNPDRAIEYLLNGIPETTQAEHREAAPAPPATTTPSGSTAAPPTT- 657
Query: 227 ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGL--PNMGSNAGAGTLDFLRNS 284
A+ G + AQ A AP G QGL P G N G LDFLR++
Sbjct: 658 AAVGDDEHINLFEAAAQ---AGAPQLGGAGRGARAAGQGLAPPAEGGNLG--NLDFLRSN 712
Query: 285 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ 344
FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E ++ Q
Sbjct: 713 PHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIDDD-----AQ 767
Query: 345 LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
L Q +TVT EER+AIERL +GF R V++ +FAC+KNEELAAN+L + E +D
Sbjct: 768 LPPGAHQ-ITVTEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFEQPDEGDD 825
>gi|225562098|gb|EEH10378.1| nucleotide excision repair protein RAD23 [Ajellomyces capsulatus
G186AR]
Length = 386
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 145/424 (34%), Positives = 202/424 (47%), Gaps = 60/424 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + V VK+ I +G DV +QQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K P ST +SQ P+
Sbjct: 58 SYNIEEKGFIVCMVSKPK-----------------------PAPSTSAGVSSQAPSTPAP 94
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
S P + + P + A AP + S L+ G E V Q+
Sbjct: 95 AAASTPAAPAHRSNPLTSDITATPSPAAPVAAPVAGGSTTFNDPSALLMGPQGEQVVAQM 154
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE---------------------QT 219
MG + R + RA+RAAY NP+RA+EYL +GIPE T
Sbjct: 155 ESMG---FPRSDIDRAMRAAYFNPDRAIEYLLNGIPETTQAEHREAAPAPPATTTPSGST 211
Query: 220 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 279
A PP A+ G + AQ A AP G QGL G LD
Sbjct: 212 AAPPTT-AAVGDDEHINLFEAAAQ---AGAPQLGGAGRGARAAGQGLAPPAEGGNLGNLD 267
Query: 280 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 339
FLR++ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E ++
Sbjct: 268 FLRSNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIDDD-- 325
Query: 340 NVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 399
QL Q +TVT EER+AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 326 ---AQLPPGTHQ-ITVTEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFEQPD 381
Query: 400 EFED 403
E +D
Sbjct: 382 EGDD 385
>gi|291223551|ref|XP_002731773.1| PREDICTED: protein RAD23 repair 23 (2L942)-like [Saccoglossus
kowalevskii]
Length = 601
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 129/416 (31%), Positives = 209/416 (50%), Gaps = 48/416 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F++E++P V D+K +E V+G D +PA+ Q LI+ G++L D +
Sbjct: 1 MLITLKTLQQQTFKVEIEPTKTVKDLKAKVEEVRGKDGFPAAGQKLIYAGRILADDKLIS 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ ++E +FVVVM+TK K + STV + PA +AP +QP +
Sbjct: 61 DYNMSEENFVVVMVTKPKAAPKTESTVESKPA-------TAP---SQPAEKPKEEKKEET 110
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ + + P +A A A A ++S++S A S L+ G+ E V ++
Sbjct: 111 KEEKIDDKPPTESASASTETAAGTTTTASTSLASTLS----AAESTLLTGAAYENVVAEL 166
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
++MG ++R+ V+RALRAA+NNP+RAV+YL SGIPE + + + PA
Sbjct: 167 MNMG---YERDPVVRALRAAFNNPDRAVDYLLSGIPE-SVLAEAEAPAPAAAEQPEPAAA 222
Query: 241 QAQQPAAPAPTSGP---------NANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALR 291
+ + PA PA T G P G +G + L FLR QFQ +R
Sbjct: 223 RTESPATPA-TGGSTTTIAATTPATTPATTAASGTSPLGGQSEEDPLAFLREQPQFQQMR 281
Query: 292 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ 351
++Q NP +L +LQ+LG+ NP L++LI +HQ F++++N PV G + + G
Sbjct: 282 QIIQQNPSLLPALLQQLGQSNPQLLQLINQHQEQFIQMLNNPVGGEQQSGGGGGGGGSGG 341
Query: 352 A-----------------VTVTPEEREAIERLEAMGFDRA---LVLEVFFACNKNE 387
+ VTP+E+EAIER+ A + + + E+ C+ +E
Sbjct: 342 GAPTSGGQVGTGPGGTSYIQVTPQEKEAIERVLAKMYSKCNSDIRYELMKKCHVDE 397
>gi|195469335|ref|XP_002099593.1| GE14546 [Drosophila yakuba]
gi|194185694|gb|EDW99305.1| GE14546 [Drosophila yakuba]
Length = 411
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 131/446 (29%), Positives = 206/446 (46%), Gaps = 92/446 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS-TQPTTTSQTPAPTV 119
V E F+VVMLT+ SSS + + +++ +T + + + + S +P T
Sbjct: 60 SYNVDEKKFIVVMLTRDS-SSSNPNQLGVKESDKLTSTDNLKDSMPREESNHSNSPPVTR 118
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
+S+ S P + A A + S +A SNL+ G TV
Sbjct: 119 NSEESILLSETTPISTDNLIGEL-----AQASLQS-------RAESNLLMGDEYNQTVLS 166
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
+++MG + RE V RA+ A+YNNPERAVEYL +GIP + + ++ NP
Sbjct: 167 MVEMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGTID----NDVNESTNPNGP 219
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 299
+ P S N++P + FLR+ QF +R+++ NP
Sbjct: 220 QTGSASSVERP-SESNSDPFE-------------------FLRSQPQFLQMRSLIYQNPH 259
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE------------------GNV 341
+L +LQ++G+ NP L++LI E+Q FL ++N+P+E NV
Sbjct: 260 LLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIERESESSATVPRVSSARTHSTLANV 319
Query: 342 LGQLASAMPQA--------------------------------VTVTPEEREAIERLEAM 369
+S + A + + ++++AIERL+A+
Sbjct: 320 NNLFSSDLEAASAERSTVATSAAQQSGSAAENEDLEQPLGVSTIRLNRQDQDAIERLKAL 379
Query: 370 GFDRALVLEVFFACNKNEELAANYLL 395
GF ALVL+ +FAC KNEELAAN+LL
Sbjct: 380 GFPEALVLQAYFACEKNEELAANFLL 405
>gi|47718026|gb|AAH70960.1| Rad23b protein [Rattus norvegicus]
Length = 252
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 143/264 (54%), Gaps = 42/264 (15%)
Query: 151 PVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEY 210
P SS S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEY
Sbjct: 5 PGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEY 61
Query: 211 LYSGIP----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGL 266
L GIP Q V P PP P +PA +
Sbjct: 62 LLMGIPGDRESQAVVDP------------PPQAVSTGTPQSPAVAAAAATTT-------- 101
Query: 267 PNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDF 326
+ +G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F
Sbjct: 102 ATTTTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHF 161
Query: 327 LRLINEPVEGG---------------EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGF 371
++++NEPV+ G + + S + VTP+E+EAIERL+A+GF
Sbjct: 162 IQMLNEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGF 221
Query: 372 DRALVLEVFFACNKNEELAANYLL 395
LV++ +FAC KNE LAAN+LL
Sbjct: 222 PEGLVIQAYFACEKNENLAANFLL 245
>gi|413954954|gb|AFW87603.1| hypothetical protein ZEAMMB73_681598 [Zea mays]
Length = 104
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/101 (75%), Positives = 90/101 (89%), Gaps = 1/101 (0%)
Query: 304 MLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAMPQAVTVTPEEREA 362
MLQELGKQNP ++RLIQE+Q +FLRL+NE EGG GN+LGQLA+A+PQ +TVTPEEREA
Sbjct: 1 MLQELGKQNPQILRLIQENQAEFLRLVNESPEGGPGGNILGQLAAAVPQTLTVTPEEREA 60
Query: 363 IERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
I+RLE MGF+R LVLEVFFACNK+EEL ANYLLDH HEF++
Sbjct: 61 IQRLEGMGFNRELVLEVFFACNKDEELTANYLLDHGHEFDE 101
>gi|70998612|ref|XP_754028.1| UV excision repair protein (RadW) [Aspergillus fumigatus Af293]
gi|66851664|gb|EAL91990.1| UV excision repair protein (RadW), putative [Aspergillus fumigatus
Af293]
gi|159126238|gb|EDP51354.1| UV excision repair protein (RadW), putative [Aspergillus fumigatus
A1163]
Length = 376
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 154/419 (36%), Positives = 221/419 (52%), Gaps = 72/419 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + V VK+ I +G +V Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIEAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K S SAA +QA P+T S+ A T A
Sbjct: 58 TYNIEEKGFIVCMVSKPKAPS------SAATPSQA------------PSTPSRAAASTPA 99
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P + SA P A PA APAPAP S++ +D S L++GS EA + Q+
Sbjct: 100 APSAPAPSAAPSAPAVPATPSPAAPAPAPTDASAAFND-----PSALLSGSQSEAVISQM 154
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
MG + R + RA+RAA+ NP+RA+EYL +GIP+ +A+A A P A +
Sbjct: 155 ESMG---FPRSDINRAMRAAFFNPDRAIEYLLNGIPDNIQQEQQQQAAAAAAAPRPSAPS 211
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-------------------TLDFL 281
AP+S P++LF + AG G LDFL
Sbjct: 212 -----GESAPSSTGGDEPVNLF-----EAAAQAGTGEGTGRGARAGAVGAGEGLPNLDFL 261
Query: 282 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV 341
RN+ FQ LR +VQ PQ+L+P+LQ++ NP + +LI +++ FL+L++E +G
Sbjct: 262 RNNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEDDG----- 316
Query: 342 LGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
A+P A++VT EER+AIERL +GF R LV++ +FAC+KNEELAANYL ++
Sbjct: 317 ------ALPPGTHAISVTEEERDAIERLCRLGFSRDLVIQAYFACDKNEELAANYLFEN 369
>gi|395740795|ref|XP_003777470.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pongo abelii]
Length = 337
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 132/361 (36%), Positives = 187/361 (51%), Gaps = 65/361 (18%)
Query: 73 MLTKSKVSSSGA--STVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAP 130
M+TK K S+ A +T +APA+ TSS T Q + TP P +A P S P S
Sbjct: 1 MVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQ----APTPVPALA-PTSTPASIT 55
Query: 131 PPAAPAPAPAPA--------PAPAPAPAPVS------------SSVSDVYGQAASNLVAG 170
P +A A + + PA PA PV+ SS S+++ A S LV G
Sbjct: 56 PASATASSEPASASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTG 115
Query: 171 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVA 225
+ E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A
Sbjct: 116 QSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQA 172
Query: 226 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 285
++ Q+ A +SG G P L+FLRN
Sbjct: 173 ASTGAPQSSAVAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQP 211
Query: 286 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-------- 337
QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 212 QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGG 271
Query: 338 -EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 396
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 272 GGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQ 331
Query: 397 H 397
Sbjct: 332 Q 332
>gi|4966345|gb|AAD34676.1|AC006341_4 Similar to gb|Y12014 RAD23 protein isoform II from Daucus carota.
This gene is probably cut off. EST gb|AA651284 comes
from this gene [Arabidopsis thaliana]
Length = 113
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 76/113 (67%), Positives = 94/113 (83%), Gaps = 2/113 (1%)
Query: 293 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMP 350
MV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG +G+V Q MP
Sbjct: 1 MVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMP 60
Query: 351 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+V VTPEE+E+IERLEAMGFDRA+V+E F +C++NEELAANYLL+H +FED
Sbjct: 61 HSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 113
>gi|449676312|ref|XP_002169219.2| PREDICTED: UV excision repair protein RAD23 homolog B-like [Hydra
magnipapillata]
Length = 343
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 124/403 (30%), Positives = 193/403 (47%), Gaps = 71/403 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IEV DKV +K+ I +GS+ +P Q LI+ GK+L D L
Sbjct: 1 MLITLKTLQQKTFKIEVDENDKVFALKELIAKEKGSE-FPIECQRLIYSGKILDDDKALC 59
Query: 61 ENKVA-ENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + +FVVVM K KV + S ++ Q S+ + QP++T
Sbjct: 60 EYNIDPVKNFVVVMSVKPKVVTKDGDKSSGVGSSTPQVESTVSMETVQPSST-------- 111
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
P + A A + SS D+ ++ + GS L++++ +
Sbjct: 112 ------------PLLTSTASASETTSVSTTSTAVSSQPDI----GTSFLTGSALDSSINE 155
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
++ +G + RE V+RAL+ ++ N +RA EYL SG VP + + P
Sbjct: 156 LMSLG---FSREQVLRALQRSFQNADRAAEYLLSG-----NVPELVE--------DAPGD 199
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA-GTLDFLRNSQQFQALRTMVQANP 298
+ A PA + GA G L+FLR+ QF+ +R+ VQ +P
Sbjct: 200 IDEESEALPA----------------------DVGAEGDLNFLRDFPQFRMMRSQVQRHP 237
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG------GEGNVLGQLASAMPQA 352
L +LQE+G+ NP L++LI ++Q F+ L+NEP G E G +
Sbjct: 238 DTLPQLLQEIGRSNPQLLQLISQNQEAFIALLNEPETGESSAPVSEDAFGGDAGAGGGFQ 297
Query: 353 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ VT EE+ AI+R+ MGF+ A V++ FFAC KNE+LA +LL
Sbjct: 298 IHVTTEEKAAIDRIVGMGFNEAEVIQAFFACEKNEQLAIEFLL 340
>gi|358333357|dbj|GAA51877.1| UV excision repair protein RAD23 [Clonorchis sinensis]
Length = 504
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 130/385 (33%), Positives = 193/385 (50%), Gaps = 88/385 (22%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+VSDVKK IE +G++ + AS Q LIH GKV++D TL++ KV + F+VVM
Sbjct: 136 QVSDVKKKIEAEKGNE-FSASSQTLIHSGKVMEDEKTLKQYKVTDKGFIVVMAV------ 188
Query: 82 SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT-PAPTVAPPQ--SVPESAPPPAAPAPA 138
+ P+ + + P + +P + Q+ PA TVA Q +VP S P AA
Sbjct: 189 -------SKPSKEPTASVEKLPEAAKPVQSEQSIPANTVASVQETTVPRSDVPAAA---- 237
Query: 139 PAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALR 198
P S++ G++A LV G+ E + +I+ MG ++R VIRA+R
Sbjct: 238 -----------GPESAT-----GESA--LVTGAEYERAISEIVGMG---FERSMVIRAMR 276
Query: 199 AAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAG-NPPAQTQAQQPAAPAPTSGPNA 256
A++NNP+RAVEYL SG IP V AGG+ + P + A+ +P+S
Sbjct: 277 ASFNNPDRAVEYLLSGNIPNAV----VREQPAGGRERVDTPGD---EHSASESPSSEDPI 329
Query: 257 NPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLM 316
+ L PQ FQ +R +VQANP++L ++Q++G N L+
Sbjct: 330 SALASLPQ----------------------FQQMRALVQANPELLPQLIQQIGADNSELL 367
Query: 317 RLIQEHQTDFLRLINEP----------VEGGEGNVLGQLASAMPQAV--TVTPEEREAIE 364
RLIQE++ FL +N P +E E G + P+ + T+T EER AIE
Sbjct: 368 RLIQENEQGFLEFLNAPISQDAGEPEGIESSETTTPGNVRQGEPRQIILTMTQEERAAIE 427
Query: 365 RLEAMGFDRALVLEV---FFACNKN 386
RL+A+GF LV++V F N+N
Sbjct: 428 RLQALGFPEELVIQVNEGIFVLNRN 452
>gi|325091544|gb|EGC44854.1| pre-mRNA-splicing factor Cwc24 [Ajellomyces capsulatus H88]
Length = 826
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 147/419 (35%), Positives = 202/419 (48%), Gaps = 64/419 (15%)
Query: 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAEN 67
LK F IE +P + V VK+ I +G DV +QQ LI+ GK+L+D T+E + E
Sbjct: 448 LKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIESYNIEEK 504
Query: 68 SFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPE 127
F+V M++K K P ST +SQ P+ S P
Sbjct: 505 GFIVCMVSKPK-----------------------PAPSTSAGVSSQAPSTPAPAAASTPA 541
Query: 128 SAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGS 187
+A + P + A AP + S L+ G E V Q+ MG
Sbjct: 542 AAAHRSNPLTSDITATPSPAAPVAAPVAGGSTTFNDPSALLMGPQGEQVVAQMESMG--- 598
Query: 188 WDRETVIRALRAAYNNPERAVEYLYSGIPE---------------------QTAVPPVAR 226
+ R + RA+RAAY NP+RA+EYL +GIPE TA PP
Sbjct: 599 FPRSDIDRAMRAAYFNPDRAIEYLLNGIPETTQAEHREAAPATPATTTPSGSTAAPPTT- 657
Query: 227 ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGL--PNMGSNAGAGTLDFLRNS 284
A+ G + AQ A AP G QGL P G N G LDFLR++
Sbjct: 658 AAVGDDEHINLFEAAAQ---AGAPQLGGAGRGARAAGQGLAPPAEGGNLG--NLDFLRSN 712
Query: 285 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ 344
FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E ++ Q
Sbjct: 713 PHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIDDD-----AQ 767
Query: 345 LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
L Q +TVT EER+AIERL +GF R V++ +FAC+KNEELAAN+L + E +D
Sbjct: 768 LPPGAHQ-ITVTEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFEQPDEGDD 825
>gi|225679426|gb|EEH17710.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 379
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 146/420 (34%), Positives = 203/420 (48%), Gaps = 71/420 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G DV + Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M+TK K ++ A T+S AP T T ++ +
Sbjct: 58 SYNIEEKGFIVCMVTKPKTTTPAA------------TSSQAPSTPTPAVASTPAAPAPAS 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PQ A A A A P S L+ G E + Q+
Sbjct: 106 NPQPTDAPATSTPAAPAPAPAAAGGATFNDP-------------SALLMGPQGEQVIAQM 152
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
MG + R + RA+RAA+ NP+RA+EYL +GIPE S Q PA T
Sbjct: 153 ESMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGIPE---------TSQAEQREAAPATT 200
Query: 241 QAQQPAAPAPTSGPNANPLDLFP---------------------QGLPNM--GSNAGAGT 277
PAAPA T G ++LF QGL G G
Sbjct: 201 APSGPAAPAATGGDEH--VNLFEAAAQAGAPQGGGAGRGARATGQGLAAAAEGQQGSLGN 258
Query: 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 337
LDFLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E +E
Sbjct: 259 LDFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIEDD 318
Query: 338 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
QL Q +TVT EER+AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 319 -----AQLPPGTHQ-ITVTEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFEQ 372
>gi|226291157|gb|EEH46585.1| hypothetical protein PADG_02683 [Paracoccidioides brasiliensis
Pb18]
Length = 379
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 146/420 (34%), Positives = 203/420 (48%), Gaps = 71/420 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + + +K+ I +G DV + Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWDV---ALQKLIYSGKILQDENTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M+TK K ++ A T+S AP T T ++ +
Sbjct: 58 SYNIEEKGFIVCMVTKPKTTTPAA------------TSSQAPSTPTPAVASTPAAPAPAS 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PQ A A A A P S L+ G E + Q+
Sbjct: 106 NPQPTDAPATTTPAAPAPAPAAAGGATFNDP-------------SALLMGPQGEQVIAQM 152
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
MG + R + RA+RAA+ NP+RA+EYL +GIPE S Q PA T
Sbjct: 153 ESMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGIPE---------TSQAEQREAAPATT 200
Query: 241 QAQQPAAPAPTSGPNANPLDLFP---------------------QGLPNM--GSNAGAGT 277
PAAPA T G ++LF QGL G G
Sbjct: 201 APSGPAAPAATGGDEH--VNLFEAAAQAGAPQGGGAGRGARATGQGLAAAAEGQQGSLGN 258
Query: 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 337
LDFLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E +E
Sbjct: 259 LDFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIEDD 318
Query: 338 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
QL Q +TVT EER+AIERL +GF R V++ +FAC+KNEELAAN+L +
Sbjct: 319 -----AQLPPGTHQ-ITVTEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFEQ 372
>gi|417410194|gb|JAA51574.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 377
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 140/252 (55%), Gaps = 37/252 (14%)
Query: 157 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 216
S+++ A S LV G + E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP
Sbjct: 143 SNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 199
Query: 217 ----EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 272
Q V P A+ G + A +SG G P
Sbjct: 200 GDRESQAVVDPPPAATTGAPQSSVAAAAATTTATTTTTSSG-----------GHP----- 243
Query: 273 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 332
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NE
Sbjct: 244 -----LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 298
Query: 333 PV---------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 383
PV GG + + S + VTP+E+EAIERL+A+GF LV++ +FAC
Sbjct: 299 PVQEAGGQGGGSGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFAC 358
Query: 384 NKNEELAANYLL 395
KNE LAAN+LL
Sbjct: 359 EKNENLAANFLL 370
>gi|358373285|dbj|GAA89884.1| UV excision repair protein [Aspergillus kawachii IFO 4308]
Length = 369
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 140/417 (33%), Positives = 210/417 (50%), Gaps = 63/417 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+ +P + V VK+ I +G +V Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K +SSG T+S AP T P+ A
Sbjct: 58 SYNIEEKGFIVCMVSKPKATSSG-------------TSSQAPST------------PSRA 92
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ P + A P+ A ++ S L++G+ EA V Q+
Sbjct: 93 VTSTPAAPPAPAPSAASTTPAVPSTPSPAAAGAAQAQGSAFNDPSALLSGTQSEAVVAQM 152
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
MG + R V RA+RAA+ NP+RA+EYL +GIPE +A+A ++
Sbjct: 153 EAMG---FARSDVNRAMRAAFFNPDRAIEYLLNGIPENIQQEQQQQAAAASAPQTAAPES 209
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-----------TLDFLRNSQQFQA 289
AP++G + P++LF G GA +L+FLRN+ FQ
Sbjct: 210 --------APSAGDD-EPVNLFEAAAQAGGQEGGARGARAAGGAELPSLEFLRNNPHFQQ 260
Query: 290 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAM 349
LR +VQ PQ+L+P+LQ++ NP + +LI +++ FL+L++E + E A+
Sbjct: 261 LRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEPDDDE---------AL 311
Query: 350 PQAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
P T VT EER+AIERL +GF R LV++ +FAC+KNEELAANYL ++ + ED
Sbjct: 312 PPGTTQIHVTEEERDAIERLCRLGFSRDLVIQAYFACDKNEELAANYLFENPDDPED 368
>gi|259487698|tpe|CBF86570.1| TPA: UV excision repair protein (RadW), putative (AFU_orthologue;
AFUA_5G06040) [Aspergillus nidulans FGSC A4]
Length = 369
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 146/414 (35%), Positives = 222/414 (53%), Gaps = 57/414 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P + V VK+ I T +G DV P+ + LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSETVGQVKEKISTEKGWDV-PSLK--LIYSGKILQDDKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K P+S P+T +++ T A
Sbjct: 58 FYNIEEKGFIVCMVSKPKTQ----------------------PSSQSPSTPAKSVTSTPA 95
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PP + S P PA P+PA + + S + + ++ L+ GS E + Q+
Sbjct: 96 PPPAPAPSTNTSTTATSGPVPA-TPSPASSGAAQSSASTFNDPSA-LLTGSQSEEVINQM 153
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+ MG ++RE + RA+RAA+ NP+RA+EYL +GIPE R++A A A
Sbjct: 154 MSMG---FEREQINRAMRAAFFNPDRAIEYLLNGIPENIQQEQQQRSAATTPA----APQ 206
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG--------TLDFLRNSQQFQALRT 292
A AP TSG + P++LF GAG +LDFLRN FQ LR
Sbjct: 207 AAAASGAPPATSGED-EPVNLFEAAAQAGEGRGGAGGASGGEPQSLDFLRNHPAFQQLRQ 265
Query: 293 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA 352
+VQ PQ+L+P+LQ++G+ NP + +LI +++ FL+L++E + +A+P
Sbjct: 266 LVQQQPQMLEPILQQVGQGNPQIAQLIGQNEEAFLQLLSEEDD-----------AALPPG 314
Query: 353 VT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
T VT EER+AIERL +GF R LV++ +FAC+KNEELAANYL ++ + +D
Sbjct: 315 TTQIHVTEEERDAIERLCRLGFPRDLVIQAYFACDKNEELAANYLFENSDDGDD 368
>gi|61557236|ref|NP_001013208.1| UV excision repair protein RAD23 homolog A [Rattus norvegicus]
gi|54038637|gb|AAH84695.1| RAD23 homolog A (S. cerevisiae) [Rattus norvegicus]
Length = 351
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 130/396 (32%), Positives = 187/396 (47%), Gaps = 108/396 (27%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K T APP
Sbjct: 65 HIDEKNFVVVMVTKAKAGQG-----------------------------------TPAPP 89
Query: 123 QSVPESAPPPAAPAPAPAPA-----PAPAPAPAPVSSSVSDVYG---------------- 161
++ P +AP P+ P P PAPA P P+ SS S
Sbjct: 90 EASPTAAPEPSTPFP-PAPASGMSHPPPSNREDKSSSEESATTTSPESISGSVPSSGSSG 148
Query: 162 ---QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 218
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 149 REEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP-- 203
Query: 219 TAVPPVARASAGGQAGNP-PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGT 277
G+P P Q+ AP + AG
Sbjct: 204 ---------------GSPEPEHGSVQESQAPE------------------QPATEAGENP 230
Query: 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP---- 333
L+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 231 LEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGEL 290
Query: 334 --VEGGEGNVLGQLASAMPQA--VTVTPEEREAIER 365
+ EG V G L PQ + VTP+E+EAIER
Sbjct: 291 ADISDVEGEV-GALGEEAPQMNYIQVTPQEKEAIER 325
>gi|403221228|dbj|BAM39361.1| DNA repair protein [Theileria orientalis strain Shintoku]
Length = 323
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 199/409 (48%), Gaps = 92/409 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTLK E+EV V D+ K +E + + A+ Q LIH GK+LK L
Sbjct: 1 MNLKVKTLKNVEVEVEVAESATVEDLMKRVEELLPN--MQANSQKLIHAGKILKRELLLS 58
Query: 61 EN-KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + E ++V+ S T SA PA ++SA T + T ++
Sbjct: 59 DYPDIKEGDKIIVI--------SSKKTESAKPAEPKLDSTSAVATPPKVETATENS---- 106
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
Q++P +A P + +P+ S LV GS L+ + +
Sbjct: 107 ---QNLPRTATPNVSQESHQSPS----------------------SRLVMGSELDQNINR 141
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
I +MG +DR +V RA+ AA+NNPERAVE+L +G +P V + G Q N PA+
Sbjct: 142 ICEMG---FDRASVERAMAAAFNNPERAVEFLSTG-----NIPSVNLENPGTQ--NTPAE 191
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 299
QA+ NA D+F L++ F+ +R VQ++PQ
Sbjct: 192 -QAE-----------NAGGEDVFR----------------MLQSHPMFEQIRQAVQSDPQ 223
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN-----EPVEGGEGNVLGQLASAMPQAVT 354
+LQ +L+ +G+ NP L++ I + Q +F+ LIN +P E N P V+
Sbjct: 224 LLQQILENIGQTNPELLQTIIQRQDEFMDLINSGAEVDPYSNPETN---------PNIVS 274
Query: 355 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+T E E+IERLE +GF R V+E + AC+KNEELAANYLL++ H+F D
Sbjct: 275 LTQVEMESIERLEGLGFSRPAVIEAYLACDKNEELAANYLLENSHDFTD 323
>gi|451994966|gb|EMD87435.1| hypothetical protein COCHEDRAFT_1206663 [Cochliobolus
heterostrophus C5]
Length = 379
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 149/435 (34%), Positives = 212/435 (48%), Gaps = 89/435 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + +K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKSKIQAEKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQT--TSSAPPTSTQPTTTSQTPAPT 118
+ E F+V M++K K + + +S+ +A T SAP TQ +TT PA
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPAASSSRAAPSTPAPAPAQTPSAPQAPTQSSTTHNAPATP 117
Query: 119 VAPPQSVP-ESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATV 177
P E P+A L G EA +
Sbjct: 118 SPAPAQASGERFNDPSA--------------------------------LTMGGEREAAI 145
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE----QTAVPPVARAS----- 228
+ MG + R + RA+RAA+ NP+RAVEYL +GIPE + A ARA
Sbjct: 146 ANMESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPESALQEQAQQTQARAPNSPTP 202
Query: 229 AGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA--------------- 273
AGG AG A QA P+SG + P++LF
Sbjct: 203 AGGNAG---ATAQAN------PSSGGD-EPMNLFEAAAAAQNRGGAGGARSGGTGGAGGG 252
Query: 274 --GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 331
A +LDFLRN+ QFQ LR +VQ PQ+L+P+LQ++G NP L ++I + FL+L+
Sbjct: 253 ALNANSLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQMIASNPEQFLQLLA 312
Query: 332 EPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 388
E + + +P QA++VT EEREAIERL +GF+R LV++ +FAC+KNEE
Sbjct: 313 EDADED---------APLPPGAQAISVTEEEREAIERLCRLGFERDLVIQAYFACDKNEE 363
Query: 389 LAANYLLDHMHEFED 403
LAAN+L D + +D
Sbjct: 364 LAANFLFDQPDDADD 378
>gi|392996951|ref|NP_001257292.1| UV excision repair protein RAD23 homolog A isoform 3 [Homo sapiens]
gi|426387415|ref|XP_004060164.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Gorilla gorilla gorilla]
Length = 308
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 134/407 (32%), Positives = 196/407 (48%), Gaps = 110/407 (27%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K +G T SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK---AGQGT-SAPP--------EASPTAAPESSTSFPPAPTSG-- 110
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSSVSDVYGQ---AASNLVAGSNLEAT 176
S PPPAA +P+ AP +P S S G+ AAS LV GS E
Sbjct: 111 ----MSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
++QPA A AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 250
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVT 356
NP +L +LQ+LG++NP L+
Sbjct: 251 NPALLPALLQQLGQENPQLL---------------------------------------- 270
Query: 357 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+L+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 271 --------QLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 307
>gi|451846054|gb|EMD59365.1| hypothetical protein COCSADRAFT_185234 [Cochliobolus sativus
ND90Pr]
Length = 379
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 146/438 (33%), Positives = 211/438 (48%), Gaps = 95/438 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + +K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKSKIQAEKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQT--TSSAPPTSTQPTTTSQTPAPT 118
+ E F+V M++K K + + +S+ +A T SAP TQ +TT PA
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPAASSSKAAPSTPAPAPAQTPSAPQAPTQSSTTHNAPATP 117
Query: 119 VAPPQSVP-ESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATV 177
P E P+A L G EA +
Sbjct: 118 SPAPAQASGERFNDPSA--------------------------------LTMGGEREAAI 145
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 237
+ MG + R + RA+RAA+ NP+RAVEYL +GIPE +A+ A+
Sbjct: 146 ANMESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPE-SALQEQAQ----------- 190
Query: 238 AQTQAQQPAAPAPTSG-----PNANP-------LDLFPQGLPNMGSNA------------ 273
QTQA+ P +P P G ANP ++LF
Sbjct: 191 -QTQARAPNSPTPAGGNTGATAQANPSSGGDEPMNLFEAAAAAQNRGGAGGARSGGTGGA 249
Query: 274 -----GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 328
A +LDFLRN+ QFQ LR +VQ PQ+L+P+LQ++G NP L ++I + FL+
Sbjct: 250 GAGALNANSLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQMIASNPEQFLQ 309
Query: 329 LINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 385
L+ E + + +P QA++VT EEREAIERL +GF+R LV++ +FAC+K
Sbjct: 310 LLAEDADED---------APLPPGAQAISVTEEEREAIERLCRLGFERDLVIQAYFACDK 360
Query: 386 NEELAANYLLDHMHEFED 403
NEELAAN+L D + +D
Sbjct: 361 NEELAANFLFDQPDDADD 378
>gi|410950562|ref|XP_003981973.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Felis catus]
Length = 308
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 125/401 (31%), Positives = 192/401 (47%), Gaps = 98/401 (24%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K S + A+P ++++S PP P + P+PT
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPA---PASGMSQPSPTARED 121
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILD 182
+S E + P +P + + + SS S AAS LV GS E + +I+
Sbjct: 122 KSPSEESVPTTSPE---------SVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMS 172
Query: 183 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 242
MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 173 MG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVS 219
Query: 243 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 302
+QPA A AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 220 EQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLP 256
Query: 303 PMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREA 362
+LQ+LG++NP L+
Sbjct: 257 ALLQQLGQENPQLL---------------------------------------------- 270
Query: 363 IERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+L+A+GF +LV++ +FAC KNE LAAN+LL FED
Sbjct: 271 --QLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFED 307
>gi|403302246|ref|XP_003941773.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Saimiri boliviensis boliviensis]
Length = 308
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 132/407 (32%), Positives = 193/407 (47%), Gaps = 110/407 (27%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K SA P A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK----AVQGTSAPP--------EASPTAAPESSTSFPPAPTSG-- 110
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSSVSDVYGQ---AASNLVAGSNLEAT 176
S PPPAA +P+ AP +P S S G+ AAS LV GS E
Sbjct: 111 ----MSHPPPAAGEDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YEREQVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
++QPA A AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 250
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVT 356
NP +L +LQ+LG++NP L+
Sbjct: 251 NPALLPALLQQLGQENPQLL---------------------------------------- 270
Query: 357 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+L+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 271 --------QLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 307
>gi|440796341|gb|ELR17450.1| Rad23, putative [Acanthamoeba castellanii str. Neff]
Length = 393
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 111/254 (43%), Positives = 158/254 (62%), Gaps = 8/254 (3%)
Query: 154 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 213
SS + +AAS LV GS+ EA V I++MG + RE V+RALRA++NNP RAVEYL +
Sbjct: 121 SSGGSIESEAASALVTGSDFEAMVSNIMEMG---FPREEVLRALRASFNNPNRAVEYLMT 177
Query: 214 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN--MGS 271
GIP+ A P + A+ A + A+ + PA P L MG
Sbjct: 178 GIPDMPAQAPASPAAERAAAPAAGGEGAAEPGSPPAAGGEGAGEGGISLPSNLLGALMGQ 237
Query: 272 NAGAG-TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 330
GAG ++LR QF ++ MVQ NPQ+L P+LQ+LG+ NP ++++I +HQ +F+ L+
Sbjct: 238 QGGAGGHFEWLRQHPQFNQIKAMVQRNPQLLGPLLQQLGQLNPQILQMIGQHQAEFMALL 297
Query: 331 NEPVEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 388
NEP++GG G G A P + + VT EE+EAI+RL+A+GF+R +V+E FFAC+K+E+
Sbjct: 298 NEPIQGGAGGAPGGPGGAPPGSNYIQVTQEEKEAIDRLQALGFERHVVIEAFFACDKDEQ 357
Query: 389 LAANYLLDHMHEFE 402
+ ANYL DH HE E
Sbjct: 358 VTANYLFDHGHELE 371
>gi|358387006|gb|EHK24601.1| hypothetical protein TRIVIDRAFT_84601 [Trichoderma virens Gv29-8]
Length = 361
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 143/412 (34%), Positives = 195/412 (47%), Gaps = 75/412 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV + LK F ++V+P DK+S VK+ I +G D P SQ+ LI+ GK+LKD T++
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTDKISAVKEKISAEKGWD--PKSQK-LIYSGKILKDDDTVQ 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSS--APPTSTQPTTTSQTPAPT 118
+ E FVV M+ K K +++ A+ S+ PP Q +T
Sbjct: 58 SYNIEEKGFVVCMVNKPKPAAAPAAAAPPPATPAPPVASTPVVPPAPVQTST-------- 109
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQ 178
A PPA P P + A P S L GS +
Sbjct: 110 ---------QAAPPATPTPNRS-AGTP-------------------SGLAMGSERAEAIA 140
Query: 179 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 238
+ MG ++R + A+RAA+NNP+RAVEYL +GIPE Q NPP
Sbjct: 141 NMEAMG---FERTQIEAAMRAAFNNPDRAVEYLLTGIPESVQ------QEQQQQRANPPQ 191
Query: 239 QTQAQQPAAPAPTSGPNANPLDLFPQ----------GLPNMGSNAGAGTLDFLRNSQQFQ 288
A G N DL Q + G LDFLR++ QFQ
Sbjct: 192 AASTAAAPAADDDGG--VNLFDLAAQRRGAPASGGAPAAAAAAQNDLGNLDFLRHNAQFQ 249
Query: 289 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA 348
LR +VQ PQ+L+P+LQ+LG NP L +LI + FL+L+ E E
Sbjct: 250 QLRQVVQQQPQMLEPILQQLGAGNPQLAQLIASNPDQFLQLLGEDAEDD---------VP 300
Query: 349 MP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
+P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 301 LPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 352
>gi|389611285|dbj|BAM19254.1| UV excision repair protein rad23 [Papilio polytes]
Length = 326
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 133/414 (32%), Positives = 190/414 (45%), Gaps = 99/414 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +KTL+ F+IE+ PE+ V +K IE +G D Y A Q LI+ GK+L D +
Sbjct: 1 MLVTLKTLQQLSFQIEIDPEETVKALKLKIEVEKGKD-YAADYQRLIYAGKILLDDNKIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V+M+TK K S + AS+ S A + S+ S +T +TP P
Sbjct: 60 TYNIDEKKFIVIMVTKPKPSETQASSTSTPEAGEC-AASTVVGDSKDKSTAEETPQP--- 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P + PE PAAP + A + E+TVQ I
Sbjct: 116 PTAAEPERTAEPAAPV------------------------------ISAELDFESTVQSI 145
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+DMG ++R+ V +ALRA+++N ERAVEYL +GIPE+ A + P
Sbjct: 146 MDMG---YNRQQVEQALRASFSNRERAVEYLITGIPEELL----QEQEAEESSEEDPLSF 198
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
QP + NP L N L+ + Q NP +
Sbjct: 199 LRDQPQFQQMRAVIQQNP------SLLNT-------------------VLQQIGQTNPAL 233
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV----------EGGEGNVLGQLASAMP 350
LQ I +HQ F+R++NEPV + G N + Q P
Sbjct: 234 LQA---------------ISQHQQAFVRMLNEPVNPPATGAVIQDSGVDNPIPQ----QP 274
Query: 351 QAVT-VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
Q+V V+P++REAIERL+A+GF +V++ +FAC KNE LAAN+LL F+D
Sbjct: 275 QSVVQVSPQDREAIERLKALGFPEHMVVQAYFACEKNENLAANFLLS--QNFDD 326
>gi|261197590|ref|XP_002625197.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|239595160|gb|EEQ77741.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|327354300|gb|EGE83157.1| nucleotide excision repair protein RAD23 [Ajellomyces dermatitidis
ATCC 18188]
Length = 386
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 147/430 (34%), Positives = 213/430 (49%), Gaps = 72/430 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + V VK+ I +G DV +QQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETVGQVKEKISQEKGWDV---AQQKLIYSGKILQDANTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAA----PANQAQTTSSAPPTSTQPTTTSQTPA 116
+ E F+V M++K K + S ++ S+ PA A +T +AP + PTT+
Sbjct: 58 SYNIEEKGFIVCMVSKPKPAPSTSAAASSQAPSTPAPVAASTPTAPAPRSNPTTSDAPAT 117
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEAT 176
P+ A P + P P S L+ G E
Sbjct: 118 PSPAAPAAAPAVGGAATFNDP---------------------------SALLMGPQGEQV 150
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
+ Q+ MG + R + RA+RAA+ NP+RA+EYL +GI P ++A A P
Sbjct: 151 IAQMESMG---FPRSDIDRAMRAAFFNPDRAIEYLLNGI------PETSQAEQREAAPAP 201
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQ----GLPNMGS-------------------NA 273
PA T AAPA + ++LF G P G+
Sbjct: 202 PATTAPTGGAAPAAAATEGDEHVNLFEAAAQAGTPQAGATGRGARAAGQGLAAAAEGQGG 261
Query: 274 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 333
G LDFLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E
Sbjct: 262 SLGNLDFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSED 321
Query: 334 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 393
++ QL Q +TVT EER+AIERL +GF R V++ +FAC+KNEELAAN+
Sbjct: 322 IDDD-----AQLPPGTHQ-ITVTEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANF 375
Query: 394 LLDHMHEFED 403
L + E +D
Sbjct: 376 LFEQPDEGDD 385
>gi|167999117|ref|XP_001752264.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696659|gb|EDQ82997.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 114
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 92/113 (81%), Gaps = 2/113 (1%)
Query: 293 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG--NVLGQLASAMP 350
MVQANPQILQPMLQELGKQNP L+RLI E+Q +FLRLINE G + LGQLA P
Sbjct: 1 MVQANPQILQPMLQELGKQNPALLRLINENQAEFLRLINEAGAEGAEGGDALGQLAGGYP 60
Query: 351 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
Q+V VTPEEREAIERLE MGF RALV+E F AC+KNE+LAANYLL++ +E++D
Sbjct: 61 QSVNVTPEEREAIERLEGMGFSRALVIEAFLACDKNEQLAANYLLENANEYDD 113
>gi|397487606|ref|XP_003814883.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Pan paniscus]
Length = 308
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 132/407 (32%), Positives = 194/407 (47%), Gaps = 110/407 (27%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K A + AP A PT+ ++TS PAPT
Sbjct: 65 RIDEKNFVVVMVTKTK-----AGQGTPAPPE-------ASPTAAPESSTSFPPAPTSG-- 110
Query: 123 QSVPESAPPPAA---PAPAPAPAPAPAPAPAPVSSSVSDVYGQ---AASNLVAGSNLEAT 176
S PPPAA +P+ AP +P S S G+ AAS LV GS E
Sbjct: 111 ----MSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETM 166
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
+ +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 167 LTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSV 213
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
++QPA A AG L+FLR+ QFQ +R ++Q
Sbjct: 214 QESQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQ 250
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVT 356
NP +L +LQ+LG++NP L+
Sbjct: 251 NPALLPALLQQLGQENPQLL---------------------------------------- 270
Query: 357 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+L+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 271 --------QLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 307
>gi|195133968|ref|XP_002011410.1| GI14087 [Drosophila mojavensis]
gi|193912033|gb|EDW10900.1| GI14087 [Drosophila mojavensis]
Length = 442
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 133/479 (27%), Positives = 207/479 (43%), Gaps = 127/479 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F I+ PE V ++K I +G++ Y +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFAIDFDPEKTVLELKNQIFYERGAE-YLVEKQKLIYAGVILTDERTIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV E F+VVML++ SG S+ + A + Q P + +TT P +
Sbjct: 60 SYKVDEKKFIVVMLSRDI---SGTSSNTNADGQRKQ-----PNEQMEGSTTGIDKKPVLQ 111
Query: 121 PPQSVP--------------------ESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVY 160
+ E + + + AP P PA SS+ D+
Sbjct: 112 NANASSAEKGIINNNNRSNDVLGVEIERSGSSSQTQISTAP---EVPIPATDYSSI-DLV 167
Query: 161 GQ---------AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 211
G+ A SNL+ G TV +++MG + R+ V RA+ A++NNPERAVEYL
Sbjct: 168 GELANASLQSRAESNLLMGEEFNRTVASMVEMG---YPRDQVERAMAASFNNPERAVEYL 224
Query: 212 YSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS 271
+GIP Q + P PN GLP +
Sbjct: 225 INGIP------------------------QDENLFNPGDEEEPNRVETSHRQGGLP---A 257
Query: 272 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 331
+ A +FLR+ QF +R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++N
Sbjct: 258 ESAADPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLN 317
Query: 332 EPVE---GGEGNVLGQLASAMPQAVTVTP------------------------------- 357
+P++ G+ S+ P+ TP
Sbjct: 318 QPLDEEAADNAQRAGRTQSSSPRRTESTPTTNPSEESNAGGHRSVAGSDNPSIAIAPEGD 377
Query: 358 ---------------------EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
++++AIERL+A+GF ALVL+ +FAC K+EELAAN+LL
Sbjct: 378 DSVATGRNIQAENLATIRLTPQDQDAIERLKALGFPEALVLQAYFACEKDEELAANFLL 436
>gi|402904433|ref|XP_003915050.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Papio anubis]
Length = 308
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 124/401 (30%), Positives = 190/401 (47%), Gaps = 98/401 (24%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPQP----- 116
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILD 182
+ E P AP +P P+ SS + AAS LV GS E + +I+
Sbjct: 117 -AAREDKSPSEESAPTTSPESVSGSVPSSGSSGREE---DAASTLVTGSEYETMLTEIMS 172
Query: 183 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 242
MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 173 MG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVS 219
Query: 243 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 302
+QPA A AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 220 EQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPALLP 256
Query: 303 PMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREA 362
+LQ+LG++NP L+
Sbjct: 257 ALLQQLGQENPQLL---------------------------------------------- 270
Query: 363 IERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+L+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 271 --QLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 307
>gi|221055233|ref|XP_002258755.1| dna repair protein rad23 [Plasmodium knowlesi strain H]
gi|193808825|emb|CAQ39527.1| dna repair protein rad23, putative [Plasmodium knowlesi strain H]
Length = 403
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 129/448 (28%), Positives = 198/448 (44%), Gaps = 95/448 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+TL+ EI V +D + DVKK I P +Q LI G +LKD +
Sbjct: 1 MKIKVRTLQNNEEEINVDNDDTILDVKKKIGVAFPE--MPYDKQKLIFSGNILKDESKAM 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + EN V+VM K SS T+ T ++ + V
Sbjct: 59 D-ILKENDIVIVMACKKIFSS------------------------TKNNQTKESSSKDVI 93
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
S PP A + AP ++S A S LV G L+ T+ I
Sbjct: 94 KSNEKASSLPPNCDQNNATSNAPEEGTENRSLNS--------AESALVTGEKLKETIDNI 145
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT--------------------- 219
MG ++RETV +A+ A+NNP RA++YL +G PE++
Sbjct: 146 CAMG---FERETVKKAMMMAFNNPNRAIDYLTNGFPEESQVNEINAINTITGMNEMNPLN 202
Query: 220 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS---NAG-- 274
A+P V + + + ++ AP+ P L N S N+G
Sbjct: 203 AMPDVNETNETNETNETNDNSYEREDNENAPS----------LPNLLNNYNSLADNSGQS 252
Query: 275 -AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI--- 330
A T D R+S F LR + +NPQ + +L+ +G+ +P + I+E+Q +F+R I
Sbjct: 253 VADTPDQFRSSPFFNILRDVALSNPQRIPEILEMIGRTDPSFLEFIRENQGEFIRAIQNY 312
Query: 331 ----------NEPVEGGEGNVLGQLASAMPQA----VTVTP---EEREAIERLEAMGFDR 373
N+ +EG E G L P + +TP E E+I++LE++GF +
Sbjct: 313 GNNDHVGSSENDLMEGEEFADPGNLNITDPNNENFQIPITPLNENEMESIKKLESLGFPK 372
Query: 374 ALVLEVFFACNKNEELAANYLLDHMHEF 401
L LE F AC+KNEE+AANYL ++M+++
Sbjct: 373 HLALEAFIACDKNEEMAANYLFENMNDY 400
>gi|327292408|ref|XP_003230903.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
gi|326466939|gb|EGD92392.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
Length = 365
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 129/403 (32%), Positives = 195/403 (48%), Gaps = 75/403 (18%)
Query: 26 VKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGAS 85
VK+ I T +G +PASQQ LI+ GK+L+D T+E + E F+V M++K K + S ++
Sbjct: 11 VKEKIATEKG---WPASQQKLIYSGKILQDDNTVESYNIEEKGFIVCMVSKPKAAPSASA 67
Query: 86 TVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAP 145
S+ A + + S AP A APA
Sbjct: 68 ASSSQTPAAAPSAPAPITPS----------------------------APTRASAPASET 99
Query: 146 APAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPE 205
P+P + S S L+ G+ + + Q+L MG + R + RA+RAAY NP+
Sbjct: 100 PATPSPAGGASSGATFNDPSALLMGNQGQEAITQMLAMG---FSRGDIDRAMRAAYFNPD 156
Query: 206 RAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQG 265
RA+EYL +GIPE++ + +A + P+ L+LF Q
Sbjct: 157 RAIEYLLNGIPEESEREAPSAPAA-------AGGAARPSTTSEEPSDAQVQESLNLFEQA 209
Query: 266 LPNMGSNA----------------------GAGTLDFLRNSQQFQALRTMVQANPQILQP 303
G+L+FLRN+ FQ LR +VQ PQ+L+P
Sbjct: 210 AAQASGGGGARGRGAGAGAGAGAGAGETAGSLGSLEFLRNNPHFQQLRQLVQQQPQMLEP 269
Query: 304 MLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEER 360
+LQ++G NP L +LI ++Q FL+L++E V+ + +P Q+++VT EER
Sbjct: 270 ILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVDD---------ETQLPPGAQSISVTEEER 320
Query: 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+AIERL +GF R V++ +FAC+KNEELAAN+L D E E+
Sbjct: 321 DAIERLCRLGFSRDSVIQAYFACDKNEELAANFLFDQPDENEE 363
>gi|255636258|gb|ACU18469.1| unknown [Glycine max]
Length = 160
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 74/102 (72%), Positives = 87/102 (85%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKVFVKTLKGTHFEIEV P+D VS+VKKNIETVQG+DVYPA+QQMLIHQGKVL+D +TLE
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAP 102
ENKV EN+F+V+ML+KSK S ST S AP+ +A TS+ P
Sbjct: 61 ENKVVENTFIVIMLSKSKSPSGEGSTTSTAPSTKAPQTSTVP 102
>gi|196008299|ref|XP_002114015.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
gi|190583034|gb|EDV23105.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
Length = 387
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 130/246 (52%), Gaps = 46/246 (18%)
Query: 174 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 233
E V +I+ MG + R+ V+ ALRA++NNP RAVEYL +GIP Q
Sbjct: 159 EQIVSEIVSMG---FPRDQVLLALRASFNNPHRAVEYLTTGIPANVL---------ETQT 206
Query: 234 GNPPAQTQAQQPAAP---------APTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 284
P TQ++ A P NPL PQG G L FLR+
Sbjct: 207 AETPTATQSESQAEPQTQPQPQEEEDQQQRQQNPLPSSPQG----------GPLGFLRSQ 256
Query: 285 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--- 341
F +R +VQ+NP+ L PMLQ+LG+ NP L+ LI+ HQ++F+ L+NEP+ G+ +
Sbjct: 257 AVFSQMRQIVQSNPEALAPMLQQLGQNNPQLLELIRNHQSEFMELMNEPITEGQPRIAPY 316
Query: 342 ------------LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389
++VT EE+EAI+RL+A+GFD LV++ +FAC+KNE L
Sbjct: 317 QQQQQQQQPSRQSPGGPGLGSLGISVTQEEKEAIDRLKALGFDEGLVVQAYFACDKNENL 376
Query: 390 AANYLL 395
AAN+LL
Sbjct: 377 AANFLL 382
>gi|322698416|gb|EFY90186.1| UV excision repair protein (RadW), putative [Metarhizium acridum
CQMa 102]
Length = 400
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 196/411 (47%), Gaps = 34/411 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV + LK F +EV+P +S VK+ I +G D Q LI+ GK+LKD T+
Sbjct: 1 MKVTFRDLKQQKFVLEVEPTYLISAVKEKISAEKGWD---PKHQKLIYSGKILKDDETVA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K+ + SS NQ + P +P T+++ A
Sbjct: 58 SYNIEEKGFVVCMVNKACLFSSQLRRCF----NQTGRLTYLQPKE-KPAPTAESSAAAAP 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPA-PVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
P A PA PA + + APA P + G+ S L G+ +
Sbjct: 113 PATPAQPVASTPAVPAAPAQSSTTQSAAPATPTPQRSGEAGGETGSGLAMGAERAEAITN 172
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGG-------- 231
+ MG ++R + A+RAA+NNP+RAVEYL +GIPE AR +A
Sbjct: 173 MEAMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPENIQQEQHARQAAAAGPTQAAPA 229
Query: 232 --QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 289
+ G AA A + + A LDFLR++ QFQ
Sbjct: 230 AQEGGEDDGGVNLFDLAAQAGGGRGGSGSGNAAAAAATATQGGADLSNLDFLRHNPQFQQ 289
Query: 290 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAM 349
LR +VQ PQ+L+P+LQ+LG NP L +LI + FL L+ E + +
Sbjct: 290 LRQVVQQQPQMLEPILQQLGAGNPQLAQLIAANPDQFLSLLGESADDD---------VPL 340
Query: 350 P---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 341 PPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 391
>gi|330912967|ref|XP_003296143.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
gi|311331971|gb|EFQ95765.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
Length = 384
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 145/429 (33%), Positives = 213/429 (49%), Gaps = 72/429 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + +K I+ +G +V +QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKAKIQADKGWEV---TQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFV--VVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
+ E F+ +V K+ +++ AS+ A P+ TPAP
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPAAAAASSSRAVPS---------------------TPAPV 96
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQ 178
A Q+ + P + P APA +D S L G EA +
Sbjct: 97 AA--QTPAAPSAPAPSSNPQNAPATPSPAPAQASGERFND-----PSALTMGGEREAAIA 149
Query: 179 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 238
+ MG + R + RA+RAA+ NP+RAVEYL +GIPE +A A PA
Sbjct: 150 NMESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPESALQEQAQQAQARAPTSPTPA 206
Query: 239 QTQAQQPAAPAPTSGPNA--NPLDLF-----------PQGLPNMGSNAGA--------GT 277
A AP + P+ P++LF P G GS GA +
Sbjct: 207 GNTG---ATAAPANAPSGADEPMNLFEAAAQAANRDRPSGGQRGGSAPGATGGGALNANS 263
Query: 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 337
LDFLRN+ QFQ LR +VQ PQ+L+P+LQ++G NP L ++I ++ FL+L+ E +
Sbjct: 264 LDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQMIAQNPEQFLQLLAEDADED 323
Query: 338 EGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 394
+ +P QA++VT +EREAIERL +GF+R LV++ +FAC+KNEELAAN+L
Sbjct: 324 ---------APLPPGAQAISVTEDEREAIERLCRLGFERDLVIQAYFACDKNEELAANFL 374
Query: 395 LDHMHEFED 403
D + +D
Sbjct: 375 FDQPDDADD 383
>gi|320583701|gb|EFW97914.1| Rad23p [Ogataea parapolymorpha DL-1]
Length = 350
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 132/416 (31%), Positives = 195/416 (46%), Gaps = 87/416 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K +EV+ D V K+ + +++ + ASQ ++ GKVL+D T E
Sbjct: 1 MQVIFKDFKKEKIPLEVELSDSVLSAKEKLASLKECE---ASQVKFVYSGKVLQDDKTFE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ EN V+ M++K K +++ + A
Sbjct: 58 NFKIKENDQVIFMISKPKKAAAAPEPAAKEQA---------------------------- 89
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQA--ASNLVAGSNLEATVQ 178
+PA A AP PA + S A AS +GS E +Q
Sbjct: 90 -----------------SPAGAAAPVAEPAQPAQEGSSATPAAFDASTFASGSVRETAIQ 132
Query: 179 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 238
I+ MG ++R V +AL AA+NNP+RAVEYL SGIP++TA PP A Q+G P
Sbjct: 133 NIMAMG---FERPQVEQALTAAFNNPDRAVEYLLSGIPQRTAEPP-----AAAQSGEP-- 182
Query: 239 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL-DFLRNSQQFQALRTMVQAN 297
QT+ QPAA + PN + L + G +A DF+ +LR ++Q
Sbjct: 183 QTE-DQPAAEDTNASPNPDNLFEAAAAAGSQGQDADQQQEGDFMG------SLREILQQQ 235
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN---------------EPVEGGEGNVL 342
P++ + +LQ+L NP L ++Q + F+R I E +EG EG
Sbjct: 236 PEMAEAVLQQLAASNPQLAEIVQSNPEAFMRYITDGDQNALAQALGVPPEYMEGVEGE-- 293
Query: 343 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL-DH 397
G+L + + +T EE EAI RL +GF+R LV++V+FAC+KNEE+ AN L DH
Sbjct: 294 GELPEGATR-IQITQEENEAINRLCELGFERDLVIQVYFACDKNEEMTANLLFSDH 348
>gi|452846190|gb|EME48123.1| hypothetical protein DOTSEDRAFT_69906 [Dothistroma septosporum
NZE10]
Length = 402
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 148/450 (32%), Positives = 218/450 (48%), Gaps = 97/450 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P +K+ VK+ I +G + S Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQQKFTIEAEPSEKIGQVKEKISAEKG---WEPSTQKLIYSGKILQDDNTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E F+V M +K K AAP+ A+ ++ A P ST + A + +
Sbjct: 58 SYKIEEKGFIVCMTSKPK----------AAPSKPAEPSTPAKPVSTPAAPAAPQAAQSTS 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
Q + + A S + +D S L G A + +
Sbjct: 108 ASQPPATPS------------PAPASTAATSESGNFND-----PSALALGEQRTAAIAGM 150
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAVPPVARASAGGQAGNPP 237
MG + R+ + RA+RAA+ NP+RAVEYL +GIP +Q P A P
Sbjct: 151 EAMG---FARDQIDRAMRAAFFNPDRAVEYLLNGIPASAQQEERPAAASPR--------P 199
Query: 238 AQTQAQQPAAPA----PTSGPNAN-PLDLF------------------------------ 262
Q QQP APA T+ P+ + P++LF
Sbjct: 200 TSNQGQQPVAPATIATETAAPSGDEPVNLFEQAAQAGRGGAGARGAAGTGAGAGAGAGSL 259
Query: 263 ------PQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLM 316
QG G AGA L+FLR++ QFQ LR +VQ PQ+L+P+LQ++ NP L
Sbjct: 260 AAALGGGQGGGQGGGQAGAANLEFLRSNPQFQQLRQVVQQQPQMLEPILQQVAAGNPQLA 319
Query: 317 RLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDR 373
++I ++ F++L+ E G+ +V A+P Q ++VT EEREAIERL +GF+R
Sbjct: 320 QIITQNPEQFMQLL---AEDGDDDV------ALPPGAQQISVTEEEREAIERLCRLGFER 370
Query: 374 ALVLEVFFACNKNEELAANYLLDHMHEFED 403
+V++ +FAC+KNEELAAN+L D E E+
Sbjct: 371 DMVIQAYFACDKNEELAANFLFDQPDEPEE 400
>gi|164665690|gb|ABY66299.1| DNA repair protein RAD23 [Brassica napus]
Length = 327
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 169/363 (46%), Gaps = 114/363 (31%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+FVKTLKG FEI+V ED V+DVKKNIETV G A++QMLIH+GKVL+D TT+E
Sbjct: 1 MKIFVKTLKGDRFEIQVNLEDSVADVKKNIETVMG---VTAAEQMLIHKGKVLEDETTME 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
N+V+E S + VM K + + S+ S P QA A P+ST T
Sbjct: 58 ANEVSEKSIIAVMKRKHASTVTSTSSASLKPQVQA-----AHPSSTASNMTY-------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+S+ ES +QQI
Sbjct: 105 --ESISESG-----------------------------------------------IQQI 115
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
L+M G+W RE V AL A N+ ++AVEYLY G+PEQ+ P +T
Sbjct: 116 LEMVSGTWSREAVAYALYFASNDLDKAVEYLYFGLPEQS---------------EDPHKT 160
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+ Q P + +A +LD LRN+ +F+ +R +VQ++P
Sbjct: 161 EGTQEHTQEPEASQDA----------------IQEWSLDALRNTPEFEYVRPLVQSDPSF 204
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLI-----------------NEPVEGGE-GNVL 342
L+ +L+ + + NP L++ I +++ DFLRL+ NEP GGE GN +
Sbjct: 205 LEEILEVIEEHNPQLVQFILDNKADFLRLVLDQPQEHQDDDVLHFQSNEPNNGGESGNQV 264
Query: 343 GQL 345
G+
Sbjct: 265 GKF 267
>gi|358056787|dbj|GAA97450.1| hypothetical protein E5Q_04129 [Mixia osmundae IAM 14324]
Length = 434
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 130/417 (31%), Positives = 208/417 (49%), Gaps = 37/417 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
++V +K L+ F +E++P + D+K+ IE+ QG + + Q +I GKVL D T+
Sbjct: 31 VRVTLKNLQQKTFTLELEPSQTILDLKQKIESDQG---HAVALQKIIFSGKVLADDKTIG 87
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E F+ V++ +S+ + + A+ ++SAP + P T + A
Sbjct: 88 DCNIKEKDFM-VLMVNKPKASAAPAVANLPAASAPAASASAPAPTATPATATPASAAAPE 146
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P + ++ P A A A A + AP +S + + G+ LEA++ ++
Sbjct: 147 PTAAASTASAPATPAATASADATTASAETAPAASDDPTAF-------LTGARLEASIAEM 199
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP---VARASAGGQAGNPP 237
+ MG + RE RA+RA+YNNP RAVEYL +GIP + P V A+ G
Sbjct: 200 VSMG---FPREDCQRAMRASYNNPHRAVEYLMNGIPAEAQTAPPRAVPAATTGATPAAAT 256
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQG----------------LPNMGSNAGAGTLDFL 281
T+ A + P++LF + AG LD L
Sbjct: 257 TTTETAATPAAPVPAPTTGQPMNLFDAARQAAQNPAPAAATGGAARPGATEAG---LDAL 313
Query: 282 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG-GEGN 340
R F+ LRT+VQ NP +LQP LQ+L + NP L+ +IQ++Q FL+ + E EG G+
Sbjct: 314 RREPAFEQLRTLVQQNPALLQPFLQQLAQTNPRLLGIIQQNQEAFLQFLGEGAEGEGDFG 373
Query: 341 VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
G Q V V+ +E +AI+RL +GFDR V++ F AC++NEE+AAN+L ++
Sbjct: 374 FEGDDGQEGMQHVQVSADEAQAIDRLCELGFDRQNVIQAFLACDRNEEMAANFLFEN 430
>gi|346324523|gb|EGX94120.1| UV excision repair protein (RadW), putative [Cordyceps militaris
CM01]
Length = 1066
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 143/404 (35%), Positives = 196/404 (48%), Gaps = 48/404 (11%)
Query: 4 FVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENK 63
+ LK F +EV+P D +S VK+ I +G D Q LI+ GK+LKD T+
Sbjct: 689 LAQDLKQQKFTLEVEPADLISAVKEKISAEKGWD---PKHQKLIYSGKILKDEETVASYN 745
Query: 64 VAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQ 123
+ E FVV M+ K K + A+ + AP + TPA AP Q
Sbjct: 746 IEEKGFVVCMVNKPKEKPAAAAPSAVAPPATPAQP------------VTSTPAVPAAPNQ 793
Query: 124 S-VPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILD 182
S +S PP P+P S+ + G A+ L G+ A + +
Sbjct: 794 SSANQSTAPPVTPSPN-------------RSADAAAPTGADAAGLTMGAERAAAITSMEA 840
Query: 183 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 242
MG ++R + A+RAA+NNP+RAVEYL +GIP+ AR +A + PA A
Sbjct: 841 MG---FERSQIEAAMRAAFNNPDRAVEYLLTGIPDNIQQEQQARQAAAAASAAAPAAPAA 897
Query: 243 QQPAAPAPTSGPNANPLDLFPQGLPNMG----------SNAGAGTLDFLRNSQQFQALRT 292
Q N DL Q G ++A G LDFLR + QFQ LR
Sbjct: 898 PQTTQTGGDEEGGINLFDLAAQHGGTGGSRGSSGDAGGASADLGNLDFLRTNPQFQQLRQ 957
Query: 293 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA 352
+VQ PQ+L+P+LQ+LG NP L +LI + FL L+ E E G QA
Sbjct: 958 VVQQQPQMLEPILQQLGAGNPQLAQLIASNPDAFLHLLGEDAEDDVPLPPGA------QA 1011
Query: 353 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 396
++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 1012 ISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFD 1055
>gi|426228904|ref|XP_004008535.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Ovis aries]
Length = 311
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 126/404 (31%), Positives = 190/404 (47%), Gaps = 101/404 (25%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA-- 120
++ E +FVVVM+TK+K +S G S S A PT+T ++TS AP
Sbjct: 65 RIDEKNFVVVMVTKAK-TSPGTS-----------VPSEASPTATPESSTSFPSAPASGMS 112
Query: 121 -PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
PP + E P AP +P P+ SS + AA + V GS E + +
Sbjct: 113 HPPPTAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDVAFAAPSTVTGSEYETMLTE 172
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 173 IMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQES 219
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 299
++QP+ A AG L+FLR+ QFQ +R ++Q NP
Sbjct: 220 QVSEQPSTEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNPA 256
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 359
+L +LQ+LG++NP L+
Sbjct: 257 LLPALLQQLGQENPQLL------------------------------------------- 273
Query: 360 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+L+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 274 -----QLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 310
>gi|156051332|ref|XP_001591627.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980]
gi|154704851|gb|EDO04590.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 370
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 139/413 (33%), Positives = 206/413 (49%), Gaps = 64/413 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + +S+VK I +G + ASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQAKFVIEAEPTELISEVKDKISKEKG---WEASQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K + + +S+ + AP+ A T++ P P +S T V
Sbjct: 58 SYHIEEKGFIVCMVSKPKAAPAASSSATKAPSTPAPATAATPAPPAAPAHSSSTTNTAV- 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PA P+PA A P+ P+ + L G+ A QI
Sbjct: 117 -----------PATPSPAGASVPSVQATPS-----------NETTGLAMGAERSA---QI 151
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+M ++R + A+RAA+ N ERA+EYL +GIPE + + P A
Sbjct: 152 AEMEAMGFERSQIDLAMRAAFFNSERAIEYLLTGIPEN-----LLQEQRQAAPAAPAAGQ 206
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD-------------FLRNSQQF 287
+ QPAA G P+DLF A + FLRN+ QF
Sbjct: 207 ASSQPAA-----GGEDEPVDLFAAAANAGNRGGAARADNAAAPGGGGLGNLDFLRNNAQF 261
Query: 288 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLAS 347
Q LR +VQ PQ+L+P+LQ++G NP L LI +H FL+L++E + +
Sbjct: 262 QQLRQVVQQQPQMLEPILQQVGAGNPQLATLISQHPEQFLQLLSENADDD---------A 312
Query: 348 AMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
+P QA+ V+ EER+AIERL +GF+R ++ +FAC+KNEELAAN+L +
Sbjct: 313 PLPPGAQAIEVSGEERDAIERLCRLGFNRDQAIQAYFACDKNEELAANFLFEQ 365
>gi|67523697|ref|XP_659908.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
gi|40745259|gb|EAA64415.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
Length = 378
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 146/423 (34%), Positives = 222/423 (52%), Gaps = 66/423 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P + V VK+ I T +G DV P+ + LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSETVGQVKEKISTEKGWDV-PSLK--LIYSGKILQDDKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K P+S P+T +++ T A
Sbjct: 58 FYNIEEKGFIVCMVSKPKTQ----------------------PSSQSPSTPAKSVTSTPA 95
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PP + S P PA P+PA + + S + + ++ L+ GS E + Q+
Sbjct: 96 PPPAPAPSTNTSTTATSGPVPA-TPSPASSGAAQSSASTFNDPSA-LLTGSQSEEVINQM 153
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYS---------GIPEQTAVPPVARASAGG 231
+ MG ++RE + RA+RAA+ NP+RA+EYL + GIPE R++A
Sbjct: 154 MSMG---FEREQINRAMRAAFFNPDRAIEYLLNLLISAFAIKGIPENIQQEQQQRSAATT 210
Query: 232 QAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG--------TLDFLRN 283
A A A AP TSG + P++LF GAG +LDFLRN
Sbjct: 211 PA----APQAAAASGAPPATSGED-EPVNLFEAAAQAGEGRGGAGGASGGEPQSLDFLRN 265
Query: 284 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG 343
FQ LR +VQ PQ+L+P+LQ++G+ NP + +LI +++ FL+L++E +
Sbjct: 266 HPAFQQLRQLVQQQPQMLEPILQQVGQGNPQIAQLIGQNEEAFLQLLSEEDD-------- 317
Query: 344 QLASAMPQAVT---VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
+A+P T VT EER+AIERL +GF R LV++ +FAC+KNEELAANYL ++ +
Sbjct: 318 ---AALPPGTTQIHVTEEERDAIERLCRLGFPRDLVIQAYFACDKNEELAANYLFENSDD 374
Query: 401 FED 403
+D
Sbjct: 375 GDD 377
>gi|156096789|ref|XP_001614428.1| DNA repair protein RAD23 [Plasmodium vivax Sal-1]
gi|148803302|gb|EDL44701.1| DNA repair protein RAD23, putative [Plasmodium vivax]
Length = 406
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 128/445 (28%), Positives = 200/445 (44%), Gaps = 86/445 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD----V 56
MKV V+TL+ EI V ED + DVKK IE P +Q LI G +LKD V
Sbjct: 1 MKVKVRTLQNNEEEISVDNEDTILDVKKKIEVAFPE--MPCDKQKLIFSGNILKDESKAV 58
Query: 57 TTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
L+EN + V+VM K SS T + ++SSA ++ T
Sbjct: 59 DVLKENDI-----VIVMACKKIFSSKNNQT-------KESSSSSANVLKSKEKT------ 100
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEAT 176
P PA AP A ++ A S LV G L+ T
Sbjct: 101 ------------------PLPANDDQKNAAPTAAEEGGQSKNL-NNAESALVTGEKLKET 141
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA---RASAGGQA 233
+ I MG ++RE V +A+ A+NNP RA++YL +G P++ V ++ + +
Sbjct: 142 IDNICAMG---FEREAVRKAMMVAFNNPNRAIDYLTNGFPDENEVNEISAINTMNGMNEM 198
Query: 234 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQ-------GLPNMGSNAGA----------G 276
G A + T+ N + + + LPN+ +N A
Sbjct: 199 GAANAANAMRDVNETNETNETNETNDNSYEREDNESAPNLPNLLNNYSALADNPRQSVPD 258
Query: 277 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI-----N 331
+ D R+S F LR + +NPQ + +L+ +G+ +P + I+E+Q +F+R I N
Sbjct: 259 STDQFRSSPFFNILRDVALSNPQRIPEILEMIGRTDPSFLEFIRENQGEFIRAIQNYGTN 318
Query: 332 EPVEGGEGNVLG--QLASAMPQAVT----------VTP---EEREAIERLEAMGFDRALV 376
+ E +++ A Q +T +TP E E+I++LE++GF + L
Sbjct: 319 DHTANTENDLMAGDAFADQGNQNITDPNNENFNIPITPLNENEMESIKKLESLGFPKHLA 378
Query: 377 LEVFFACNKNEELAANYLLDHMHEF 401
LE F AC+KNEE+AANYL ++M+++
Sbjct: 379 LEAFIACDKNEEMAANYLFENMNDY 403
>gi|291407417|ref|XP_002719904.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryctolagus cuniculus]
Length = 488
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 132/418 (31%), Positives = 204/418 (48%), Gaps = 75/418 (17%)
Query: 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72
F I++ P V +K+ IE QG D +P + Q L++ G+VL D L + ++ E+ V V
Sbjct: 13 FHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDCQIHEHHAVTV 72
Query: 73 MLTKSKVSSSGASTVSAAPANQAQTTS----------------SAPPTSTQPTTTSQTPA 116
++ + + +++ A + A A Q+ + +AP TST+ TPA
Sbjct: 73 LVARPEAATTAAPATATATAGQSHPATAASAGAGAPARGPALPAAPATSTR-----ATPA 127
Query: 117 P-TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEA 175
P + SVP ++ A P P P+P P A A SS + QAA L+ E
Sbjct: 128 PASSTCAMSVPATS-TRATPRLPPCPSPTPDDAIAGPSSR-AQPSEQAARALLTRPASEQ 185
Query: 176 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-----PPVARASAG 230
V +I+ MG ++RE V+ ALRA++NNP RAVEYL G+P A PP A +S
Sbjct: 186 MVAEIVSMG---YEREQVLAALRASFNNPHRAVEYLLMGLPGDRASAAEVEPPQAGSSGA 242
Query: 231 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 290
G++ + +A + AA TSG +PLD+ LRN +F+ L
Sbjct: 243 GRS----SAVEADEGAA---TSGSGGHPLDV-------------------LRNLPEFEEL 276
Query: 291 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN--------------EPVEG 336
R ++Q P +L +LQ L Q+P L ++++Q + ++ E V+
Sbjct: 277 RRIIQHFPSLLPGVLQRLCPQDPQLEDQLRQYQEYLVHMLTTEEEEDGSEGGGGGEGVDN 336
Query: 337 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 394
E + + VTP+E+ AIERL+A+GF LV++ +FAC KNE LAA+ L
Sbjct: 337 AE---TAETVREDDSYIEVTPQEQAAIERLKALGFPEGLVIQAYFACEKNEILAASLL 391
>gi|320586564|gb|EFW99234.1| uv excision repair protein [Grosmannia clavigera kw1407]
Length = 400
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 148/423 (34%), Positives = 213/423 (50%), Gaps = 57/423 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F IE++P + ++ VK+ I +G + Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFVIEIEPSETIAAVKQKISDERG---WAPKTQKLIYSGKILKDEDTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV ++ K K + S+ +A+P+ A+ ++ A + + + A
Sbjct: 58 SYKIEEKGFVVCVVNKPKPAPVAESSSAASPSTPARASAVAATPAAPAAAAAASSAAIAQ 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ + P PAA A P A + P S SV +A +N+ A
Sbjct: 118 ---AAVAATPSPAARAAGPTAGGATSYTD-PNSFSVGPALQEAITNMEA----------- 162
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYS--GIPEQTAVPPVARASAGGQAGNPPA 238
MG ++R + A+RAAYNNP+RAVEYL + GIP+ PP A + A
Sbjct: 163 --MG---FERSQISAAMRAAYNNPDRAVEYLLTLQGIPDNLQPPPAAAGAGAESEAAAAA 217
Query: 239 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA---------------------GAGT 277
A PAA + N DL Q GS G G
Sbjct: 218 PAAAAAPAAGIEEHPESVNLFDLAAQHGQGGGSRGAAAQPSADSAAAAAAAAAGSQGLGN 277
Query: 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 337
LDFLR++ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI ++ FL L++E +G
Sbjct: 278 LDFLRHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAQNPDQFLSLLSE--DGD 335
Query: 338 EGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 394
E + + +P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L
Sbjct: 336 EDD------APLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFL 389
Query: 395 LDH 397
D
Sbjct: 390 FDQ 392
>gi|254569268|ref|XP_002491744.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|238031541|emb|CAY69464.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|328351754|emb|CCA38153.1| Probable DNA repair protein RAD23 [Komagataella pastoris CBS 7435]
Length = 338
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 188/402 (46%), Gaps = 67/402 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK ++V P D + K+ + TV+ SD AS+ ++ GKVL+D +
Sbjct: 1 MKIVFKDLKKEKVILDVDPTDTILSAKEKLATVKNSD---ASKIKFVYSGKVLQDDKDFD 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
KV EN ++ ML P+ + +
Sbjct: 58 AFKVKENDVIIFML---------------------------------PSVFKKEEPKNL- 83
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ +++ + AP A P P S S + AS G++ E ++ I
Sbjct: 84 -ENRIDKTSTESSKTTTIAAPGIAVPPVPVNTSGSFN------ASTFAVGNDRENAIRNI 136
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
++MG +DR V ALRAA+NNP+RAVEYL +G+P P AG ++ ++
Sbjct: 137 MEMG---YDRSQVEAALRAAFNNPDRAVEYLLTGLPVNNEEPI-----AGSRSAPNDGRS 188
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT--MVQANP 298
Q TS A DLF + A +G N+Q+ ++ ++Q NP
Sbjct: 189 QPVSSTGVESTSTETAPGTDLFE-----AAAVASSGQQQ-RENTQRDDLMQIGELIQNNP 242
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 358
++++P LQ++ NP L LIQ++ +F+R + +EG G G+L Q + V PE
Sbjct: 243 EMVEPFLQQIASSNPQLAELIQQNPEEFMRAL---MEGDNGE--GELEDEGVQ-IQVAPE 296
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL-DHMH 399
E AI RL +GFDR LV++V+FAC+KNEE+ A+ L +H+
Sbjct: 297 EEAAINRLCELGFDRNLVVQVYFACDKNEEMTADLLFSEHID 338
>gi|428673091|gb|EKX74004.1| uv excision repair protein rad23, putative [Babesia equi]
Length = 317
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 124/413 (30%), Positives = 181/413 (43%), Gaps = 113/413 (27%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLK E++V+ V V + IE + + PA Q LIH GK+LK ++
Sbjct: 1 MKLTVKTLKNVQVEVQVQETSTVEAVMEQIEQLLPN--MPAKTQKLIHSGKILKREMQIK 58
Query: 61 EN-KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + + V+V+ +K
Sbjct: 59 DYPDIKDGDKVIVIASKV------------------------------------------ 76
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
V SAP P A P P AP S VY +S L+ G L+ V +
Sbjct: 77 -----VESSAPQPVAKVEEKTPESTPVQQEAPEKSE--PVYDNPSSKLLIGQELQDNVNR 129
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPPA 238
I +MG ++R V RA+ AA+NNPERAVE+L +G IPE
Sbjct: 130 ICEMG---FERAMVERAMAAAFNNPERAVEFLSTGHIPE--------------------- 165
Query: 239 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA-----GAGTLDFLRNSQQFQALRTM 293
P A +DL P+M + + L++ F+ LR +
Sbjct: 166 ---------------PEAMGMDL-----PSMEHSGDMPRTNEDVIQMLQSHPMFEQLRQV 205
Query: 294 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ--------L 345
VQ++PQ+LQ +L +G+ NP L++ I EHQ +F+ LI+ G E G
Sbjct: 206 VQSDPQMLQQLLDNIGRNNPELLQSIIEHQDEFMDLISS---GAEVEPFGMPLERPDSVN 262
Query: 346 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 398
P +++T E E+++RLEA+GF R V+E F AC+KNE+LAANYLL+H
Sbjct: 263 DENNPNIISLTESEMESVQRLEALGFPRPAVIEAFLACDKNEQLAANYLLEHF 315
>gi|170092959|ref|XP_001877701.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647560|gb|EDR11804.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 378
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 125/406 (30%), Positives = 200/406 (49%), Gaps = 44/406 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KT + F+IE+ D ++ +K I+ QG +P + Q +I+ GK+L + T++
Sbjct: 1 MKITIKTTQQKVFQIEIDTSDTIAVLKDKIQESQG---HPTAAQKIIYSGKILSNDKTID 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V+M++K K + + ++ S+AP + Q +S P P ++S V+
Sbjct: 58 SCGIKEKDFLVLMVSKPKPTPAATASTSSAPQD-VQMDTSPPAPPAAPPSSSTPAPVLVS 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
SV + P A PA +V+ +G S ++G L++ + +
Sbjct: 117 DTTSVTQPTTPAATPAAT-------------APPAVAPAFGDM-STFLSGEALQSAITNM 162
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+MG + R+ V+RA+RA+YNN +RAVEYL +GIP PA
Sbjct: 163 TEMG---FPRDQVLRAMRASYNNADRAVEYLMTGIPAHLEAEAAGPTPPTAAPATQPAAA 219
Query: 241 QAQQPAAPAPTSGPNANPLDLF----------PQGLPNMGSNAGAGTLDFLRNSQQFQAL 290
P P P +LF G N L+ LR++ Q Q L
Sbjct: 220 APISANVPPPN-----QPQNLFQATGGVGPAAAGGAAGAPQNPVHLNLEALRDNPQIQQL 274
Query: 291 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP 350
R + +PQ+ QP++Q+L QNP + +++ ++ +L+ G L +
Sbjct: 275 RQQLADDPQMAQPLIQQLAMQNPAMAQMLAQNPDALAQLL--------GVELDEEVPPGA 326
Query: 351 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 396
V+VT EER+AIERLEA+GF R VLE +FAC+KNEELAANYL +
Sbjct: 327 HVVSVTAEERDAIERLEALGFPRQAVLEAYFACDKNEELAANYLFE 372
>gi|50309879|ref|XP_454953.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644088|emb|CAH00040.1| KLLA0E22133p [Kluyveromyces lactis]
Length = 383
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 134/439 (30%), Positives = 197/439 (44%), Gaps = 101/439 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K K IE+ + +S K+ I + D ASQ LI+ GK+L+D T+
Sbjct: 1 MLINFKDFKKEKLPIELADDATISHAKELIAEQKQCD---ASQIKLIYAGKILQDPKTVS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAA-PANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ E V+ M++K+K + T S P +++Q T+SA +
Sbjct: 58 GCNLKEGDQVIFMISKTKKKADVKVTESTTEPQDESQATASAETS--------------- 102
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
A A APA A +++V+ G ++ V GS TV +
Sbjct: 103 ----------------AVANAPAEATTTGTRTGTTAVTQEEGTTDASFVTGSQRNETVNR 146
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
I++MG +DRE V RALRAA+NNP+RAVEYL GIPE + P+Q
Sbjct: 147 IMEMG---YDREQVERALRAAFNNPDRAVEYLLMGIPE----------------ASEPSQ 187
Query: 240 TQAQQPAAPAPTSGPNANPL--------------DLFPQGLPNMG-----SNAG-----A 275
QA+ A +G NAN +LF Q N G S AG
Sbjct: 188 QQAE---AVTSEAGANANSEVATDVPSQFTEHEDNLFAQAEANNGEQGHESAAGLGGEEM 244
Query: 276 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV- 334
GT+ + LR +V P+ L P+ + L + PHL + + F+ L+ E V
Sbjct: 245 GTIGL--TMEDITQLRDVVSGRPEALMPLFESLSTRYPHLRETMLQDPQRFISLLLEAVG 302
Query: 335 ----------------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLE 378
EG G+ GQ A P VT++ E+ EAI RL +GF+R LV++
Sbjct: 303 GSLTDSLGENLGDDIAEGDLGDFGGQTQGAPPN-VTISAEDEEAINRLCELGFERTLVVQ 361
Query: 379 VFFACNKNEELAANYLLDH 397
++FAC+KNEE+AAN L ++
Sbjct: 362 IYFACDKNEEIAANMLFNN 380
>gi|388580050|gb|EIM20368.1| UV excision repair protein Rad23 [Wallemia sebi CBS 633.66]
Length = 336
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 128/407 (31%), Positives = 186/407 (45%), Gaps = 80/407 (19%)
Query: 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEE 61
+V +KTL+ F++ V+ D ++ +K+ IE QG + + Q LI GK+L D T+E
Sbjct: 3 EVTIKTLQQKVFKVVVEDSDTIATLKQKIEADQG---FAVNTQKLIFSGKILADDRTIES 59
Query: 62 NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAP 121
++ E F+VVM++K P P A
Sbjct: 60 LQIKEKDFLVVMVSK--------------------------------------PKPQPAT 81
Query: 122 PQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQIL 181
P+ PA + P P P SSS Q +NL GS LE V ++
Sbjct: 82 PKKDEAKVEQPAQKSEQPEQPEQPQQTQQPASSSTP---SQPGNNLAMGSELETAVSNMV 138
Query: 182 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 241
+MG +DR V++A+RA++NNPERAVEYL +GIP+ P + P T
Sbjct: 139 EMG---FDRAQVMKAMRASFNNPERAVEYLMTGIPQHLQQPEQSEQPQQQSEQQPNQPTG 195
Query: 242 AQQPAAPAPTSGPNANPLDLFP----QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA- 296
A PL+LF Q P G A G + QQ Q L +VQA
Sbjct: 196 A---------------PLNLFDAARQQSSPAAGQAAPGG------DGQQAQ-LAELVQAA 233
Query: 297 --NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT 354
NP +LQ ++QE+ + NP L +L+ ++ L L++ EG EG+ Q Q +
Sbjct: 234 QENPALLQSLIQEIAQSNPTLAQLLAQNPQALLDLLSG--EGAEGDF--QDEDGPGQVIH 289
Query: 355 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 401
+T E+ EA+ RLEA+GF R + + AC NEELAANYL + +
Sbjct: 290 LTEEQAEAVARLEALGFSREMSAQALLACEGNEELAANYLFEQQEDL 336
>gi|47206809|emb|CAG13273.1| unnamed protein product [Tetraodon nigroviridis]
Length = 366
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 141/411 (34%), Positives = 204/411 (49%), Gaps = 54/411 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE+ E+ V +K+ IE +G D +P S LI+ GK+L D L+
Sbjct: 1 MLITLKTLQQQTFKIEIDEEETVKRLKEKIEEEKGKDHFPVSGLKLIYAGKILSDDKPLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+++ +FVVVM TK K +++ +A ++APP + P
Sbjct: 61 EYKISDKNFVVVMATKPKTAAAAPQPSAAG--------TTAPP-ALDPGPDPCRRHRLRP 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PP AP P P+ SS +++ +A SNLV G + E+ V +I
Sbjct: 112 PPPPPRPENRCSIVFIDLTAPPPPLPPSRGSEGSSGTNLIDEAVSNLVTGPSYESMVNEI 171
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+ MG ++RE V+ ALRA++NNP+RAVEYL TA P A A+ A PA T
Sbjct: 172 MLMG---YEREQVVAALRASFNNPDRAVEYLL------TAAGPAAEATPASSAPAAPAGT 222
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+PA G NP L FLRN QFQ +R ++Q N +
Sbjct: 223 -----GSPAGAEG--VNP-------------------LSFLRNQPQFQQMRQLIQQNAAL 256
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFL-------RLINEPVEGGEGNVLGQLASAMP-QA 352
L +LQE+G++NP L+R+ +T LI + G A P +
Sbjct: 257 LPTLLQEIGRENPELLRVTLAARTQRCSASTSAPHLIFXXXGATAAGMAGGTAGENPMRY 316
Query: 353 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+ VT +E+EAIERL+ +GF LV++ FFAC KNE LAAN+LL F+D
Sbjct: 317 IQVTAQEKEAIERLKELGFPEGLVIQAFFACEKNENLAANFLLQ--QNFDD 365
>gi|443714722|gb|ELU07000.1| hypothetical protein CAPTEDRAFT_148202, partial [Capitella teleta]
Length = 320
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 113/344 (32%), Positives = 175/344 (50%), Gaps = 37/344 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F+IE++ +KV +K+ I +G D Y A Q LI+ GK+L D +
Sbjct: 1 MIITLKTLQQQTFKIEIEESEKVLALKERIAQEKGGD-YAADNQKLIYAGKILDDKQCIS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E++FVV+M+TK+K + + A PA Q + A + + + TP T
Sbjct: 60 EYKIQESNFVVIMVTKAKPKAPEKAP-EAKPAEQPTPSQPAATPAAASSEPAATPTET-- 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQ-----------AASNLVA 169
P + P +PAPA A + +P + V++ A S LV
Sbjct: 117 -----PAAVDQPMSPAPAAATTES-METSSPATEVVTEATPADAPPAAVQPESAESTLVT 170
Query: 170 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 229
G + E TVQ+++ MG + R+ V+RALRA++NNP+RAVEYL SGIP++ A
Sbjct: 171 GESYEQTVQEMMSMG---FARDMVVRALRASFNNPDRAVEYLLSGIPDEPVPEAPVAAPP 227
Query: 230 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 289
P A Q AP + S AG L FLR++ QF+
Sbjct: 228 AAGQQPPAAGGQPPAAPPAAPATPGTP-------------ASTAGEDPLHFLRSTPQFET 274
Query: 290 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 333
+R +VQ+NP +L LQE+ + NP L ++I E+Q F++++N+P
Sbjct: 275 MRRLVQSNPGLLSNFLQEIRQANPRLFQMINENQERFVQMLNDP 318
>gi|400602559|gb|EJP70161.1| UV excision repair protein Rad23 [Beauveria bassiana ARSEF 2860]
Length = 397
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 148/429 (34%), Positives = 202/429 (47%), Gaps = 74/429 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI------------- 47
MKV + LK F +EV+P D +S VK+ I T +G D P Q+++
Sbjct: 1 MKVTFRDLKQQKFTLEVEPTDLISAVKERISTEKGWD--PKHQKLIYSGADEQNPAPTAP 58
Query: 48 -----HQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAP 102
GK+LKD T+ + E FVV M+ K K + A+ +AAP +
Sbjct: 59 PFLTNFLGKILKDEETVASYNIEEKGFVVCMVNKPKEKPAAATPSAAAPPATPAQPAQG- 117
Query: 103 PTSTQPTTTSQTPAPTVAPPQSVPE-SAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYG 161
TPA AP QS +A PA P P + A APA G
Sbjct: 118 -----------TPAAPAAPNQSSASLTANIPATPTPNRS---TDATAPA----------G 153
Query: 162 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 221
++ L G+ A + + MG ++R + A+RAA+NNP+RAVEYL +GIPE
Sbjct: 154 GDSAGLTMGTERAAAITSMEAMG---FERSQIEAAMRAAFNNPDRAVEYLLTGIPENIQQ 210
Query: 222 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQ----------GLPNMGS 271
AR +A A Q G + N DL Q +
Sbjct: 211 EQQARQAAAAAPA---APAAPQTTQTGGDEEGGSVNLFDLAAQHGGSGGSRGGSGDAAAA 267
Query: 272 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 331
A G LDFLR + QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL+L+
Sbjct: 268 AADLGNLDFLRTNPQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIASNPDAFLQLLG 327
Query: 332 EPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 388
E E +P QA++VT EER+AIERL +GFDR ++ +FAC+KNEE
Sbjct: 328 EDAEDD---------VPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEE 378
Query: 389 LAANYLLDH 397
LAAN+L D
Sbjct: 379 LAANFLFDQ 387
>gi|289741355|gb|ADD19425.1| nucleotide excision repair factor NEF2 RAD23 component [Glossina
morsitans morsitans]
Length = 377
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 127/413 (30%), Positives = 197/413 (47%), Gaps = 49/413 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL F +E V D+K ++ + V P QQ LI+ G+VL + L+
Sbjct: 1 MKLTIKTLDQKTFYVEFDDTRTVWDLKSHLHKLPEVGVQPELQQ-LIYAGRVLDNDNALK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+VVM K+ S++ V+A +T + T P+ ++T T
Sbjct: 60 TYSIDERKFLVVMAKKAPPSAAAKEEVAAI-----KTAKPSEQTRASPSAAAETIKKTEE 114
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNL------- 173
P + PPPAA A A A A P++ N++ +
Sbjct: 115 PKRQEKAKTPPPAAQAAASPAATPAATETQPLALDQELQQNPQHRNILEAMDFSPTAAAS 174
Query: 174 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ-TAVPPVARASAGGQ 232
E+ VQ+I+ MG D V RAL A++NNP+RA+EYL GIP+ A+PP+
Sbjct: 175 ESLVQEIMSMGYAEAD---VRRALLASFNNPDRAIEYLIEGIPDFPEALPPL-------- 223
Query: 233 AGNPPAQTQAQQPAAPAPTSGPNANPLD-----LFPQGLPNMGSNAGAGTLDFLRNSQQF 287
PT P+ NP+ G G L+FLR +F
Sbjct: 224 -----------------PTIQPDVNPVSGVTVAGIGSGGGGGGGGGAGSPLNFLREDPRF 266
Query: 288 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLAS 347
+R +++ P++L +L +G+ NP L+ +I+EHQ DF+ ++NEP + G +
Sbjct: 267 IQMRRVIRQRPELLSSVLARIGETNPVLLSIIREHQDDFVAMLNEPEDEGSEEAPSEGHE 326
Query: 348 AMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
A Q +++T EE AIERL A+GF R +VL+ + AC +NEE A++L HM +
Sbjct: 327 A--QEISLTEEESNAIERLVALGFPRQIVLQAYIACERNEEQTADFLCRHMED 377
>gi|302916881|ref|XP_003052251.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
gi|256733190|gb|EEU46538.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
Length = 389
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 146/420 (34%), Positives = 205/420 (48%), Gaps = 64/420 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P + +S VK+ I +G D P Q+ LI+ GK+LKD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPTELISAVKEKISAEKGWD--PKLQK-LIYSGKILKDEETVA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K K + + +S+ P T QP + TPA A
Sbjct: 58 SYNIEEKGFVVCMVNKPKPKPAAPAA----------ESSAPPATPAQPI--ANTPAAPAA 105
Query: 121 PPQSVPESAPPPAAPAPAPA-PAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
P QS A PA P P + A + AP+ P ++ +A +N+ A
Sbjct: 106 PVQSTSHQAAVPATPTPQRSVEAGSGAPSNEPSGLAMGAQRAEAIANMEA---------- 155
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
MG ++R + A+RAA+NNP+RAVEYL +GIPE + A +
Sbjct: 156 ---MG---FERSQIEAAMRAAFNNPDRAVEYLLTGIPENIRQEQQQQQQQQHHAASGGQA 209
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA-------------------GTLDF 280
AQ A G + N DL Q + +G G LDF
Sbjct: 210 PAAQPAAHGGDEGG-SVNLFDLAAQRGGSGRGGSGGNQAAAAAAAAAAAGQGGDLGNLDF 268
Query: 281 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 340
LR++ QFQ LR +VQ PQ+L+P+LQ+LG NP L LI + FL+L+ E +
Sbjct: 269 LRHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAELIASNPDQFLQLLGEDADDD--- 325
Query: 341 VLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
+P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 326 ------VPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 379
>gi|322707150|gb|EFY98729.1| nucleotide excision repair protein RAD23 [Metarhizium anisopliae
ARSEF 23]
Length = 383
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 139/424 (32%), Positives = 198/424 (46%), Gaps = 77/424 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ-GKVLKDVTTL 59
MKV + LK F +EV+P D +S VK+ I +G D P Q+++ GK+LKD T+
Sbjct: 1 MKVTFRDLKQQKFVLEVEPTDLISAVKEKISGEKGWD--PKHQKLIYSGLGKILKDDETV 58
Query: 60 EENKVAENSFVVVMLTKSK----VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP 115
+ E FVV M+ K K ++ ++ A Q ++ A P + +T+Q+
Sbjct: 59 ASYNIEEKGFVVCMVNKPKEKPAPAAESSAAAPPATPAQPVASTPAVPAAPAQPSTTQSA 118
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEA 175
AP PQ E+ G+ S L G+
Sbjct: 119 APATPTPQRSGEAG-------------------------------GETGSGLAMGAERAE 147
Query: 176 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 235
+ + MG ++R + A+RAA+NNP+RAVEYL +GIPE AR +A AG
Sbjct: 148 AITNMEAMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPENIQQEQHARQAAA--AGP 202
Query: 236 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA-----------------GTL 278
A A G N DL Q +G+ G L
Sbjct: 203 TQATPAAPAAQEGGEDDG-GVNLFDLAAQAGGGGRGGSGSGSAAAAAAGATQGGADLGNL 261
Query: 279 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 338
DFLR++ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL L+ E +
Sbjct: 262 DFLRHNPQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAANPDQFLSLLGESAD--- 318
Query: 339 GNVLGQLASAMP-----QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 393
+P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+
Sbjct: 319 --------DDVPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANF 370
Query: 394 LLDH 397
L D
Sbjct: 371 LFDQ 374
>gi|50412599|ref|XP_457143.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
gi|49652808|emb|CAG85137.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
Length = 373
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 123/430 (28%), Positives = 185/430 (43%), Gaps = 89/430 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K IEV D V K+ + + + +V SQ ++ GKVL+D TLE
Sbjct: 1 MQIIFKDFKKQKIPIEVDLSDTVLATKEKLASEKDCEV---SQLKFVYSGKVLQDEKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E ++ M++K+K +S + PA + TS+ +T+ T S TPA
Sbjct: 58 SFKIKEGDSIIFMISKAKKASP-----APGPAKAEEKTSTDASATTESTNASSTPAA--- 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
A+ A P A A G + EAT+Q I
Sbjct: 110 ------------ASGASTNQQGSEPGSAFAQ------------------GDDREATIQNI 139
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE-------QTAVPPVARASAGGQA 233
++MG ++R + ALRAA+NNP RAVEYL +GIPE Q+ P+ ++
Sbjct: 140 MEMG---YERPQIEEALRAAFNNPHRAVEYLLTGIPESLQRHADQSTSAPIGESTTN--- 193
Query: 234 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL----------DFLRN 283
T + G +LF G T D L
Sbjct: 194 -----TTNDHEEEHEHDHEGEEGQGENLFEAAAAAAAQGEGGNTTSGAGGAEAGADDLGE 248
Query: 284 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG 343
Q + LRT +Q NP+++QP+L++L NP + LIQ+ F+R G G+ +G
Sbjct: 249 DNQMRLLRTALQTNPELIQPLLEQLAASNPQVAALIQQDPEGFIRSF-----LGSGDDMG 303
Query: 344 -------------QLASAMPQAVTV--TPEEREAIERLEAMGFDRALVLEVFFACNKNEE 388
P+ V + T ++ AI RL +GFDR LV++V+ AC+KNEE
Sbjct: 304 FDFEEGEGEGVEGAGQGNEPETVRIALTEQDESAINRLCELGFDRNLVIQVYMACDKNEE 363
Query: 389 LAANYLLDHM 398
+AA+ L M
Sbjct: 364 VAADILFRDM 373
>gi|198436382|ref|XP_002131525.1| PREDICTED: similar to RAD23a homolog [Ciona intestinalis]
Length = 335
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 117/409 (28%), Positives = 184/409 (44%), Gaps = 85/409 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTLK F+IE+ E+ V +K+ I +G+D +P + Q LI+ GK+L D +L+
Sbjct: 1 MLITIKTLKQNIFKIEIDEEEPVKVLKEKIAKEKGNDNFPVAGQKLIYAGKILDDSKSLK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ + F+V M+TK K S + +A T++ QPT
Sbjct: 61 EYKIEDGKFIVAMVTKPK--SVSPPAPTPPEPTEAAVTTTTSTQEEQPTNQ--------- 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P A + +PA A + +P++ S QA S LV G V I
Sbjct: 110 ----------PAVASTTSSSPAEEQASSASPLNVS------QAESTLVTGEAYNELVTSI 153
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+ MG ++RE V+ AL A++ NP+RAVEYL SG + G A PP Q
Sbjct: 154 MAMG---FERERVVAALNASFCNPDRAVEYLMSG------------TTNVGTA--PPQQQ 196
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
P AP S N + L ++ + Q + +Q NP +
Sbjct: 197 PDTIPTENAPISDSNV---------------------FNDLMDNPEIQVMAQQIQQNPHL 235
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINE-----------PVEGGEGNVLGQLASAM 349
LQP LQ++ + NP L ++ H +F+ + P G G V
Sbjct: 236 LQPYLQQIEQSNPSLFNMVSSHPEEFVSFLTTLRRGTSQTQPPPASAGAGGV-------- 287
Query: 350 PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 398
V VT E++ IE+L+++GF + ++ + AC+KN ++AAN+LL +
Sbjct: 288 -SYVRVTAGEQQDIEQLKSLGFSESECVQAYMACDKNLDMAANFLLSDI 335
>gi|358398611|gb|EHK47962.1| hypothetical protein TRIATDRAFT_298203 [Trichoderma atroviride IMI
206040]
Length = 367
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 142/409 (34%), Positives = 194/409 (47%), Gaps = 63/409 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV + LK F ++V+P D++S VK+ I +G + Q LI+ GK+LKD T++
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTDQISAVKEKIAAEKG---WEPKTQKLIYSGKILKDDDTVQ 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K P + AP
Sbjct: 58 SYNIEEKGFVVCMVNK--------------------------PRPAAAAAPAAAAAPPAT 91
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P Q VP + P PAP+ + AP PA + SV G S L G+ + +
Sbjct: 92 PAQRVPST--PAVPPAPSQTSSQAPPPATPTPNRSVESPSG-GVSGLAMGAERAEAIANM 148
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
MG ++R + A+RAA+NNP+RAVEYL +GIPE RAS
Sbjct: 149 EAMG---FERTQIEAAMRAAFNNPDRAVEYLLTGIPENIQQEQQQRASQ-------QQAA 198
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQ---------GLPNMGSNAGAGTLDFLRNSQQFQALR 291
A AAPA N DL Q G LDFLR++ QFQ LR
Sbjct: 199 AAAPTAAPAADDDGGVNLFDLAAQRRGGGASDAPAAAGAGQGDLGNLDFLRHNAQFQQLR 258
Query: 292 TMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP- 350
+VQ PQ+L+P+LQ+LG NP L +LI + FL+L+ E + +P
Sbjct: 259 QVVQQQPQMLEPILQQLGAGNPQLAQLIASNPDQFLQLLGEDADDD---------VPLPP 309
Query: 351 --QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 310 GAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 358
>gi|119498549|ref|XP_001266032.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
gi|119414196|gb|EAW24135.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
Length = 360
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 143/402 (35%), Positives = 207/402 (51%), Gaps = 80/402 (19%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
KV VK+ I +G +V Q LI+ GK+L+D T+E + E F+V M++K K S
Sbjct: 6 KVGQVKEKISKEKGWEV---PQLKLIYSGKILQDDKTIETYNIEEKGFIVCMVSKPKAPS 62
Query: 82 SGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAP 141
SAA +QA P+T S+ A T A P + SA P A PA
Sbjct: 63 ------SAATPSQA------------PSTPSRAAASTPAAPSAPAPSAAPSAPAVPATPS 104
Query: 142 APAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAY 201
APA APA S++ +D S L++GS EA + Q+ MG + R + RA+RAA+
Sbjct: 105 PAAPAQAPADASAAFND-----PSALLSGSQSEAVISQMESMG---FPRSDINRAMRAAF 156
Query: 202 NNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDL 261
NP+RA+EYL +GIP+ + + A + AP+S P++L
Sbjct: 157 FNPDRAIEYLLNGIPDN-----IQQEQQQQAAAAAAPPAPSAPSGESAPSSTGGDEPVNL 211
Query: 262 FP-----------------------QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 298
F +GLPN LDFLRN+ FQ LR +VQ P
Sbjct: 212 FEAAAQAGTGEGTGRGARAGAAGAGEGLPN---------LDFLRNNPHFQQLRQLVQQQP 262
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTV 355
Q+L+P+LQ++ NP + +LI +++ FL+L++E +G A+P A++V
Sbjct: 263 QMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSEEDDG-----------ALPPGTHAISV 311
Query: 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
T EER+AIERL +GF R LV++ +FAC+KNEELAANYL ++
Sbjct: 312 TEEERDAIERLCRLGFSRDLVIQAYFACDKNEELAANYLFEN 353
>gi|325187409|emb|CCA21947.1| UV excision repair protein RAD23 putative [Albugo laibachii Nc14]
Length = 420
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 155/332 (46%), Gaps = 72/332 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+G F IE +P D V+ VK I+ Q +PA QQ LIH GK+LKD T L
Sbjct: 1 MKLTVKTLQGNAFSIEAEPTDTVAVVKTKIQETQE---FPAIQQKLIHAGKILKDDTALS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + EN F+VVM++K+K G+ SA P+ T + PP + S + T
Sbjct: 58 EYNIKENDFIVVMVSKAK----GSRPTSALPSTATAQTPTVPPPVPSTSAVSSSETST-- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P SV S P A + + + A V Q+
Sbjct: 112 -PLSVSSSTRPTTEGTMASGSSGTSTTPSSTAEA--------------------ANVGQL 150
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
DMG + E V L+AA+ NP+RAVEYL +GIPE P
Sbjct: 151 CDMG---FPEEQVRSCLQAAFGNPDRAVEYLMNGIPENLVNP------------------ 189
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
AA APT+G AG+L+ LRN QF + R +V+ NP
Sbjct: 190 ---TSAAAAPTTG------------------GPSAGSLEQLRNHPQFASFREVVRTNPAA 228
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 332
L +LQ++G QNP L+RLI E+Q+ FL+++NE
Sbjct: 229 LPALLQQIGGQNPELLRLIHENQSQFLQMLNE 260
>gi|365991864|ref|XP_003672760.1| hypothetical protein NDAI_0L00320 [Naumovozyma dairenensis CBS 421]
gi|410729747|ref|XP_003671052.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS 421]
gi|401779871|emb|CCD25809.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS 421]
Length = 427
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 206/442 (46%), Gaps = 68/442 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V K K ++++P + + DVK + + + SQ +I+ GKVL+D T+E
Sbjct: 2 VNVIFKDFKKEKIPLDLEPSNTILDVKSQLAQAKACE---ESQIKIIYSGKVLQDGQTVE 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP--TTTSQTPAPT 118
E ++ E ++ M++K K STV+ A + A P TT S + P
Sbjct: 59 ECQLKEGDQIIFMISKKK------STVTKVTEPPAAAAAQAQAPGANPEITTASNSATPG 112
Query: 119 V---APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEA 175
+ A PE P A A A A AP +++ + +++ V G+
Sbjct: 113 LIETAAASGTPEGTPQTGNDTTASASANTATDAGAPATTTAATELSPSSAGFVTGTQRNE 172
Query: 176 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 235
TV++I++MG ++RE V RALRAA+NNP+RAVEYL GIPE + QA
Sbjct: 173 TVERIMEMG---YEREEVERALRAAFNNPDRAVEYLLMGIPENLQQQHQQQQQQPTQA-- 227
Query: 236 PPAQTQAQQPAAPAPTSGPNANPL------DLFPQ---GLPNMGS-------NAGAGT-- 277
Q A + +A A +G +A+ DLF Q G N GS + G GT
Sbjct: 228 -SPQNIANEGSATATATGDDAHAEEPPAEDDLFAQAAQGSGNAGSAGSAVGGSTGEGTPG 286
Query: 278 ------LDFLRNSQ------------------QFQALRTMVQANPQILQPMLQELGKQNP 313
D L Q ++ LR + +NPQ ML E N
Sbjct: 287 SIGLTIQDLLSLRQAVSGDPESLSSLLENLSTRYPQLREQIMSNPQTFISMLLEAVGDNL 346
Query: 314 HLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDR 373
+ + + D INE G+ + +G+ ASA P + +TPE+ +AI RL +GF+R
Sbjct: 347 QSLEGLGDIGGDLGE-INE----GDNDTMGE-ASAAPPTIQLTPEDEQAISRLCELGFER 400
Query: 374 ALVLEVFFACNKNEELAANYLL 395
+LV++V+FAC+KNEE+AAN L
Sbjct: 401 SLVIQVYFACDKNEEIAANMLF 422
>gi|114205486|gb|AAI11407.1| Rad23b protein [Rattus norvegicus]
Length = 225
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 130/241 (53%), Gaps = 42/241 (17%)
Query: 174 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPPVARASA 229
E V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP Q V P
Sbjct: 1 ENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP------ 51
Query: 230 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 289
PP P +PA + + +G L+FLRN QFQ
Sbjct: 52 ------PPQAVSTGTPQSPAVAAAAATTTAT--------TTTTSGGHPLEFLRNQPQFQQ 97
Query: 290 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------------ 337
+R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 98 MRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGG 157
Query: 338 ---EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 394
G + + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+L
Sbjct: 158 GGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFL 217
Query: 395 L 395
L
Sbjct: 218 L 218
>gi|363746935|ref|XP_003643857.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Gallus
gallus]
Length = 214
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 140/241 (58%), Gaps = 43/241 (17%)
Query: 168 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA 227
V GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 11 VTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------- 56
Query: 228 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF 287
+A PP Q +++ P P P NPL+ FLR QF
Sbjct: 57 -GSPEAERPPVQ-ESRAPEQPQVEGQPGENPLE-------------------FLREQPQF 95
Query: 288 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV---LGQ 344
Q +R ++Q NP +L +LQ+LG++NP L++ I +HQ F++++NEP+ G G++ +G
Sbjct: 96 QNMRQVIQQNPALLPALLQQLGQENPQLLQQISQHQEQFIQMLNEPL-GELGDLEGEMGA 154
Query: 345 LASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 402
+ PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+
Sbjct: 155 IGDESPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFD 212
Query: 403 D 403
D
Sbjct: 213 D 213
>gi|313224970|emb|CBY20762.1| unnamed protein product [Oikopleura dioica]
Length = 352
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 133/414 (32%), Positives = 194/414 (46%), Gaps = 86/414 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD---VYPASQQMLIHQGKVLKDVT 57
M++ VKTL+ F++E +P V D K IE SD VY A Q LI+QGK+L+D
Sbjct: 1 MQLTVKTLQQKAFKVEAEPSILVKDFKALIEEAGKSDHGGVYKAEAQKLIYQGKILEDEK 60
Query: 58 TLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
+EE ++ E F+V+M+TK KV + + +T S TPA
Sbjct: 61 KIEEYQITEKGFIVLMVTKPKVVPKPVEPKP---------EPTPAAPAAAASTESSTPAE 111
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATV 177
+ + + + P A A APV+ V +NL+A E+ V
Sbjct: 112 STSSTDATTTPSQPVA------------TEAAAPVNPHV--------ANLMAMGFPESQV 151
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 237
+Q AL AA+NNPERAVEYL +GIPE+ +A+ + +A
Sbjct: 152 KQ----------------ALSAAFNNPERAVEYLMNGIPEEL----LAQMTTTPEAAAAS 191
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
A T A AAP T+ S + TL+ +RN QFQ +RT+++ N
Sbjct: 192 AGTTADASAAPTVTA-----------------PSRSVGSTLEQIRNEPQFQQIRTLIRNN 234
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG----------------GEGNV 341
PQ+L +Q+L +NP I +Q +F+ +INEP E G+G
Sbjct: 235 PQLLSQFIQQLQIENPEAFAAISANQQEFINMINEPGEAQPAGDDSAEAAAPATPGDGPR 294
Query: 342 LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ Q + +T E+R +IERL+ +GF VL+ FFAC+KNE AAN+LL
Sbjct: 295 VRQTEDGRVM-LEITAEDRASIERLKELGFPEQAVLQAFFACDKNENDAANFLL 347
>gi|90078929|dbj|BAE89144.1| unnamed protein product [Macaca fascicularis]
Length = 217
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 131/234 (55%), Gaps = 38/234 (16%)
Query: 176 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAV--PPVARASAG 230
V +I+ MG ++RE VI ALRA++NNP+RAVEYL GIP E AV PP A ++
Sbjct: 1 MVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPQAASTGA 57
Query: 231 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 290
Q+ A +SG G P L+FLRN QFQ +
Sbjct: 58 PQSSAVAAAAATTTATTTTTSSG-----------GHP----------LEFLRNQPQFQQM 96
Query: 291 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG---------EGNV 341
R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 97 RQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGG 156
Query: 342 LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 157 IAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 210
>gi|50292795|ref|XP_448830.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528143|emb|CAG61800.1| unnamed protein product [Candida glabrata]
Length = 392
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 128/430 (29%), Positives = 198/430 (46%), Gaps = 79/430 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V K K + ++++ + VK+ + D SQ LI GKVLKD ++E
Sbjct: 2 VSVTFKNFKKEKYPLDLESSQSIVAVKEALSEKLSCD---PSQIKLIFSGKVLKDGDSVE 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + V+ M++ K +++ T SSAP ++ T + TPA +
Sbjct: 59 SCNFKDGNEVIFMVSAKKATATKV------------TESSAPKAQSEETPSESTPATSTQ 106
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P + E+ P + AP ++ D + V GS AT+++I
Sbjct: 107 PETNQNETTEPATNSSSENTEAP---------NAGTDDGF-------VVGSERNATIERI 150
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
++MG ++R V RALRAA+NNP+RAVEYL GIPE T P Q G +
Sbjct: 151 MEMG---YERAEVERALRAAFNNPDRAVEYLLMGIPE-TLRP---------QEGQTSQEH 197
Query: 241 QAQQPAAPAPTSGPNANP---LDLFPQG-----LPNMGSNAGAGTLDFLRNS-------- 284
+A ++ NA P DLF Q P+ AG T + ++
Sbjct: 198 EADVDMNEEESTEGNAEPPAEDDLFAQAARDSATPSAAQTAGGTTSESAGSATGGPPGSI 257
Query: 285 ----QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV----EG 336
+ ALR +V NP+ L P+L+ L + P L I + F+ ++ E V +G
Sbjct: 258 GLTMEDLLALRQVVSGNPEALAPLLENLSNRYPQLREQIMANPEVFVSMLLEAVGDNLQG 317
Query: 337 ---------GEGN-VLGQLASAMPQA-VTVTPEEREAIERLEAMGFDRALVLEVFFACNK 385
GEG+ V G A A +T++PE+ +AI RL +GF+R LV++V+FAC+K
Sbjct: 318 AMDFEAIAEGEGDTVEGADGFAEENAPITLSPEDEQAISRLCELGFERTLVIQVYFACDK 377
Query: 386 NEELAANYLL 395
NEE+AAN L
Sbjct: 378 NEEIAANMLF 387
>gi|195064359|ref|XP_001996553.1| GH23932 [Drosophila grimshawi]
gi|193892099|gb|EDV90965.1| GH23932 [Drosophila grimshawi]
Length = 470
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 112/366 (30%), Positives = 174/366 (47%), Gaps = 50/366 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VK L+ F I+ PE V D+KK I +G++ Y +Q LI+ G +L D T+
Sbjct: 1 MIITVKNLQQQTFSIDFDPEKTVLDLKKTIFNERGAE-YLVEKQKLIYAGVILTDERTIS 59
Query: 61 ENKVAENSFVVVMLTKS-KVSSSGAST-----VSAAPANQAQTTSSAP------------ 102
KV E F+VVMLT+ V+ SG+ T V++A Q T++ P
Sbjct: 60 SYKVDEKKFIVVMLTRDISVTGSGSITNTTDAVASAQRKTQQETTAQPKAAAAESKAEAK 119
Query: 103 PTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQ 162
PTS T +S+ E P + A A A A SS+ D+ G+
Sbjct: 120 PTSKSNAVAEGTTKTNKTTNESIVE---PASTAAVAGAARATDVDVTASDYSSI-DLVGE 175
Query: 163 ---------AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 213
A SNL+ G TV +++MG + R+ V RA+ A++NNPERAVEYL +
Sbjct: 176 LANASLQTRAESNLLMGEEYNRTVASMIEMG---YARDQVERAMSASFNNPERAVEYLIT 232
Query: 214 GIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA 273
GIP++ ++ Q Q S ++ +++
Sbjct: 233 GIPQEESLFNAGHDDEDVARAGSLLQQQVGGGGDGGSAS---------------DLQTDS 277
Query: 274 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 333
A +FLR+ QF +R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P
Sbjct: 278 SADPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQP 337
Query: 334 VEGGEG 339
+EG G
Sbjct: 338 LEGEVG 343
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 37/43 (86%)
Query: 353 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ +TP++++AIERL+A+GF LVL+ +FAC K+EELAAN+LL
Sbjct: 422 IRLTPQDQDAIERLKALGFPETLVLQAYFACEKDEELAANFLL 464
>gi|168046898|ref|XP_001775909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672741|gb|EDQ59274.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 174
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 109/213 (51%), Gaps = 44/213 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG +F+++V P + V +VKK IE QG ++P +QQ+LI+QGKVLKD TT+E
Sbjct: 1 MKISVKTLKGNYFDLDVTPLETVINVKKRIEDSQGEQLFPCAQQLLIYQGKVLKDETTME 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+NKV EN F VVML SK S+
Sbjct: 61 DNKVLENEFFVVML--SKTSN--------------------------------------I 80
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
Q + + A SS + NLVAG NLE+ Q+I
Sbjct: 81 LKQGLCNLSMRAFFCVKYLNQHSGIGKGTAHFQSSRN----VCCFNLVAGINLESKAQEI 136
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 213
LD+GGGSWD +TV+ ALRAA NN ERA+EYL S
Sbjct: 137 LDIGGGSWDFDTVVHALRAASNNVERALEYLSS 169
>gi|124802198|ref|XP_001347399.1| DNA repair protein RAD23, putative [Plasmodium falciparum 3D7]
gi|23494978|gb|AAN35312.1|AE014830_56 DNA repair protein RAD23, putative [Plasmodium falciparum 3D7]
Length = 389
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/436 (26%), Positives = 194/436 (44%), Gaps = 85/436 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+TL+ EI V P+D + D+KK +E V P+ +Q LI GK+LKD
Sbjct: 1 MKIKVRTLQNNEEEINVDPDDSILDLKKKVEVVLAD--MPSDKQKLIFSGKILKD----- 53
Query: 61 ENK----VAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
E+K + +N V+VM+T+ ++ + N+ + + +
Sbjct: 54 EDKATDILKDNDTVIVMVTRRIINKNN----QKEDINKESLSKIENNNNNNNNKSDDNIN 109
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEAT 176
T + + E+ + ++ + + A S L+ G L+ +
Sbjct: 110 VTTSNTEEQKENKENKNDNT----------------NDNIYNSFNNAESMLLTGDKLKES 153
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
+ I MG +++E V +A+ AYNNP RA++YL +G P + V +
Sbjct: 154 IDNICAMG---FEKEQVKKAMILAYNNPNRAIDYLTNGFPNENVNVNVNENINNESNFSN 210
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
++ P +S P + SN RNS F A+R M +
Sbjct: 211 LLNSE-NNPLLEENSSHP--------------LSSNEET-----FRNSTFFNAIRDMALS 250
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFL-------RLINEPVEGGEGNV-------- 341
NPQ L +LQ +G+ +P + I+++QT+FL IN+ E + N+
Sbjct: 251 NPQRLPELLQMIGRTDPSFLEYIRQNQTEFLAALQNYGNNINDHEEHSDDNLDNADDENA 310
Query: 342 ---------LGQLASAMPQA----VTVTP---EEREAIERLEAMGFDRALVLEVFFACNK 385
+GQ + P + +TP E E+I++LE++GF + + LE F AC+K
Sbjct: 311 IQNDSFLQDVGQQVLSDPNNENINIPITPLNENEMESIKKLESLGFPKHVALEAFIACDK 370
Query: 386 NEELAANYLLDHMHEF 401
NEE+AANYL ++M++F
Sbjct: 371 NEEMAANYLFENMNDF 386
>gi|340384331|ref|XP_003390667.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 363
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 140/241 (58%), Gaps = 24/241 (9%)
Query: 168 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP----EQTAVPP 223
+ G++ E TV ++ MG + R V+RAL+A+YNNP RA+EYL P E+ A P
Sbjct: 110 ITGTDYERTVNDMVGMG---FMRNDVVRALQASYNNPTRAMEYLCGERPMPTLEEEAEPQ 166
Query: 224 VARASAGGQ----AGNPPAQTQAQQPAAPAPTSGP-NANPLDLFPQG-LPNMGSNAGAGT 277
+ AGGQ +PP Q+PA + S P +A P PQG L G + +
Sbjct: 167 PRGSGAGGQQVPLTSSPPQAPPTQRPAGQSQQSTPPSAAPRP--PQGGLSAGGGQSASNV 224
Query: 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG- 336
L L QFQALR VQ NP +L +LQE+G+ NP L++LI ++Q +F+ L+N+P +
Sbjct: 225 LQGLSQLPQFQALRAAVQQNPGLLPSLLQEIGQHNPELLQLINQNQQEFVDLLNQPPQPI 284
Query: 337 GEGNVL--GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 394
G G L G + ++ VT EEREAI+RL+A+GF V++ + AC+KNE LAAN L
Sbjct: 285 GSGQELPPGTV------SIQVTQEEREAIDRLKALGFPEGEVIQAYLACDKNETLAANLL 338
Query: 395 L 395
L
Sbjct: 339 L 339
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + VKTL+ F+IE++ V D+KK IE QG + +PA+ Q LI+ GK+L D L
Sbjct: 1 MIITVKTLQQKTFKIEIEESASVLDLKKAIEANQG-EAFPAAGQKLIYSGKILNDSQPLS 59
Query: 61 ENKVAENSFVVVMLTK 76
+ + E++FVVVM++K
Sbjct: 60 DYSIQESNFVVVMVSK 75
>gi|260945185|ref|XP_002616890.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
gi|238848744|gb|EEQ38208.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
Length = 340
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 122/401 (30%), Positives = 193/401 (48%), Gaps = 70/401 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K LK ++ V+P D V K+ + + DV P SQ ++ GKVL+D T +
Sbjct: 1 MQVTFKDLKKQTVQVSVEPSDLVRVGKEKVAAAR--DVDP-SQLKFVYSGKVLQDDKTFD 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E KV E ++ M+++ K + + V+A A++A + S P TSTQ
Sbjct: 58 EFKVKEGDSIIFMISQKKSPAPAPAPVAAPAASEAVSAPSEPETSTQ------------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PE+A AA A PA ++S+ +G + EA +Q +
Sbjct: 105 ----TPETASSTAANASTPA----------------------SSSDFASGQDREAAIQNM 138
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
++MG ++R + RALRAA+NNP RAVEYL +GIPE A +A PP
Sbjct: 139 MEMG---YERPQIERALRAAFNNPHRAVEYLITGIPE-----------ALTRAEQPP--- 181
Query: 241 QAQ-QPAAPAPTSGPNANPLDLFPQGLPNMG--SNAGAGTLDFLRNSQQFQALRTMVQAN 297
QAQ +PAA A + + + NM + A AG + LR +Q+
Sbjct: 182 QAQEEPAAHAEAQTEHEDESNQEANVHENMFDVAEAAAGDEPVPAQEDRLALLRAAIQSE 241
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVT--- 354
P+++Q +LQE+ NP +LI++ F+ + G+ + G + V
Sbjct: 242 PELVQSVLQEIAASNPQAAQLIEQDPEAFISTL-----LGQHDDAGYEIEEEEEGVVRVQ 296
Query: 355 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
++ + AI RL +GFDR +V++V+ AC++NEE+AA+ L
Sbjct: 297 LSESDESAIRRLCELGFDRDMVVQVYLACDRNEEVAADILF 337
>gi|134107453|ref|XP_777611.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260305|gb|EAL22964.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 404
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 133/440 (30%), Positives = 200/440 (45%), Gaps = 79/440 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+K+ KT++ F ++ + D V+D+KK I+ Q +P Q LI+ GK+L D +++E
Sbjct: 2 VKITFKTVQNKLFTVDAQDSDTVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSVE 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E F+VVM VS A + P ST + + +VA
Sbjct: 59 SLKIKEKDFLVVM-------------VSRATPAATPAAPATPAPSTPAPAPAASEQASVA 105
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P SAP + + A + P+ V S + + V G L+A + +
Sbjct: 106 NPAVPAPSAPAAESAPASAPAPAAESAQPSAVESGL-------GGSFVTGPALQAAIDGM 158
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQ--------------------- 218
++MG ++R+ VIRALRA++NNP+RAVEYL SG IP
Sbjct: 159 VEMG---FERDQVIRALRASFNNPDRAVEYLMSGNIPSVEGTAPAAPAPAAPSTPSAAAA 215
Query: 219 ---------------TAVPPVARASAGGQAGNPPAQTQA---QQPAAPAPTSGPNANPLD 260
+ PP ASAGG A N A +A + PA P
Sbjct: 216 PAQPAAPSEPAAQPVASAPP---ASAGGSADNLFAAAEAAMNRDRGVPAAAGAPG----- 267
Query: 261 LFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 320
P G P + + Q A+R MVQ NP ++QP+LQ++ ++P L +LI
Sbjct: 268 -LP-GAPGLPGAGAGMPGG-MGGGDQLSAIRQMVQQNPAMIQPLLQQIATEHPELAQLIA 324
Query: 321 EHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVF 380
++ L+ G+ + M V +T EE A+ERLEA+GFDR VL+ +
Sbjct: 325 QNPEALYELLGGGGGEGDDDDEFGEGPVMR--VNLTQEEAAAVERLEALGFDRQTVLQAY 382
Query: 381 FACNKNEELAANYLLDHMHE 400
C+KNEELAAN+L ++M E
Sbjct: 383 MLCDKNEELAANFLFENMEE 402
>gi|428184303|gb|EKX53158.1| hypothetical protein GUITHDRAFT_64501 [Guillardia theta CCMP2712]
Length = 346
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 129/418 (30%), Positives = 190/418 (45%), Gaps = 107/418 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDV-----YPASQQM-LIHQGKVLK 54
MKV VK++ G +FE+E+ V D+KK I V+ DV +S+ M +I QGK+L
Sbjct: 1 MKVKVKSIAGDNFEVEIGGSSTVFDLKKAISEVKRYDVTDEMLRDSSKGMKIILQGKILD 60
Query: 55 DVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQT 114
D +QT SS P +
Sbjct: 61 D---------------------------------------SQTISSLGP---------KI 72
Query: 115 PAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLE 174
+ PP+ V + P PA V+S + + + ++ G +LE
Sbjct: 73 SFFVMMPPEGVTLKKVEVSKPQDQPA-----------VTSGLQN------NTILMGEDLE 115
Query: 175 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 234
A+V++I MG + V RALR A+NNP+RAVE LY+G + A+ Q
Sbjct: 116 ASVREICGMG---FAESEVRRALRLAFNNPDRAVEILYNGASDD------AQQMQNEQPA 166
Query: 235 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG--TLDFLRNSQQFQALRT 292
Q Q P AP+ S P +D L S AGAG L+ LR QF +R
Sbjct: 167 EQQQQQQGASPEAPSHGSMPLRFNMD----ALAVNASEAGAGGNQLEMLRRDPQFAFVRH 222
Query: 293 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ- 351
VQ+ P +L +L ++G+ NP L+ I ++Q +F+R++NEP G N PQ
Sbjct: 223 CVQSQPSLLPELLLQIGRVNPSLLATINQNQAEFVRIVNEP---GMQN---------PQE 270
Query: 352 ----AVTVTPEEREAIERLEA----MGFDRALVLEVFFACNKNEELAANYLLDHMHEF 401
+ +T EE + +ERLE MG DR VLE + AC+K+E+LAANYLL+++ +
Sbjct: 271 PSQHTIQLTREELDQVERLEQLVVPMGLDRQAVLEAWLACDKDEQLAANYLLNNLEDI 328
>gi|321479297|gb|EFX90253.1| hypothetical protein DAPPUDRAFT_299929 [Daphnia pulex]
Length = 381
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 139/288 (48%), Gaps = 62/288 (21%)
Query: 154 SSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 213
+SVS A S L+ G + VQ I+DMG + R+ V RALRA++NNP+RAVEYL +
Sbjct: 118 ASVSTGLLAAESALIVGDDYNQMVQNIMDMG---YPRDQVERALRASFNNPDRAVEYLLT 174
Query: 214 GIPEQTAVPPVARASAG------------GQAGNPPAQTQAQQPAAPAPTSGPNANPLDL 261
GIP++ V A G G G A + P +PL
Sbjct: 175 GIPDRADVGEGAPGGGGQGPDEAALEFILGGRGQSEAALSMEGEGEEGDELAPGEDPLA- 233
Query: 262 FPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQE 321
FLR+ QF +R +VQ NP +L +LQ++G+ NP L+++I +
Sbjct: 234 ------------------FLRSQPQFAQMRQVVQQNPSLLNAILQQIGQTNPALLQMISQ 275
Query: 322 HQTDFLRLINEPVEGGEGNV----------------------LGQLASA----MPQAVTV 355
+Q F R++ EP G G+ GQ A P + V
Sbjct: 276 NQAAFFRMLTEPSSGTAGSASVTPASGAQPGTGSGRAAESPRQGQEEGAGDYFAPGVIHV 335
Query: 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
TP+++EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 336 TPQDKEAIERLKALGFPEHLVVQAYFACEKNENLAANFLLS--QNFDD 381
>gi|146161955|ref|XP_001008308.2| UBA/TS-N domain containing protein [Tetrahymena thermophila]
gi|146146601|gb|EAR88063.2| UBA/TS-N domain containing protein [Tetrahymena thermophila SB210]
Length = 373
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 125/399 (31%), Positives = 193/399 (48%), Gaps = 91/399 (22%)
Query: 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL-KDVTT 58
MK+ +KTLKGT F++ ++ V+++K+ I T + + L+H+GK L +D T
Sbjct: 1 MKINIKTLKGTDFFDVNLEETATVAELKEKIATEKQKEKDTIK---LVHKGKQLTEDSKT 57
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
L E + +N FV++M + K A A ++ TTS+A T+T PTT P P
Sbjct: 58 LGELGIKDNDFVILMFFQKKAEKEDAP--QQAQSDTTSTTSAASTTATNPTTV---PKPA 112
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQ 178
V+ P + ++ S+L+ G LEA ++
Sbjct: 113 VSQPATTQQTGSQGTG------------------------------SDLLQGPELEAKIK 142
Query: 179 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVPPVARASAGGQAGNPP 237
+I MG ++R V++AL+AAY NPERAV+YL SG IP++ P
Sbjct: 143 EIESMG---FERPKVLQALKAAYYNPERAVDYLLSGNIPKE------------------P 181
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
+Q Q+ PL QGL G L L + QFQ + ++ N
Sbjct: 182 SQQQS---------------PL----QGL----QGPGVEQLAQLAQNPQFQHIAQAIRQN 218
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 357
P +LQP++Q+L + NP + RL+Q++ FL+L+ E G L P A+ VTP
Sbjct: 219 PALLQPVMQQLAQTNPDVARLLQQNPQAFLQLLLAASENEGGQTLP------PNAIQVTP 272
Query: 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 396
EE+ I+ + +MGFD+ LE + C+KN+ELA NYL +
Sbjct: 273 EEKADIDDIISMGFDKNDALEAYITCDKNKELAINYLFE 311
>gi|365761179|gb|EHN02849.1| Rad23p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 397
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 127/435 (29%), Positives = 195/435 (44%), Gaps = 89/435 (20%)
Query: 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA 65
K K ++++P + + + K + S SQ LI+ GKVL+D T+ E +
Sbjct: 7 KNFKKEKVPLDLEPSNTIFEAKTKLAQ---STSCEESQIKLIYSGKVLQDSKTVSECGLK 63
Query: 66 ENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSV 125
+ VV M+++ K + + + AAP A T + P++ Q T ++ P
Sbjct: 64 DGDQVVFMISQKKSTKTKVTEPPAAPET-ATTVPAGEPSTEQATASADAPTA-------- 114
Query: 126 PESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGG 185
PAA P P +S+ V + V G+ T+++I++MG
Sbjct: 115 ------PAAEELQPQEEP---------NSNTEQVESVSTPGFVVGTQRNETIERIMEMG- 158
Query: 186 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ-TQAQQ 244
+ RE V RALRAA+NNP+RAVEYL GIPE PP + A PP T A+Q
Sbjct: 159 --YPREEVERALRAAFNNPDRAVEYLLMGIPENLR-PPEQQQQAVAPTEQPPTTATTAEQ 215
Query: 245 PAAPAPTSGPNANPLDLFPQGLPNMGSNAGA------------------GTLDFLRNSQQ 286
PA DLF Q G N + G++ +
Sbjct: 216 PAED-----------DLFAQAA--QGGNTSSGALGSAGGAADAAQGGPPGSIGL--TVED 260
Query: 287 FQALRTMVQANPQILQPMLQELGKQNPH---------------LMRLIQEHQTDFLRLIN 331
+LR +V NP+ L P+L+ + + P L+ + ++ D + +
Sbjct: 261 LLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGAD 320
Query: 332 EPVEGGEGNVLGQLASAMPQ--------AVTVTPEEREAIERLEAMGFDRALVLEVFFAC 383
+ VEG + V G+ A+A P+ V TPE+ +AI RL +GF+R LV++V+FAC
Sbjct: 321 DMVEGEDIEVAGEGAAAGPEQAEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFAC 380
Query: 384 NKNEELAANYLL-DH 397
+KNEE AAN L DH
Sbjct: 381 DKNEEAAANILFSDH 395
>gi|317107865|dbj|BAJ53744.1| nucleotide excision repair protein [Marsupenaeus japonicus]
Length = 382
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 119/413 (28%), Positives = 192/413 (46%), Gaps = 53/413 (12%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
+K L+ F +E++ V +K+ +E +G D YPA Q LI+ GK+ +D TTLE +
Sbjct: 6 LKNLQQQTFTVEIELSATVKALKEKVEKEKGGD-YPAVGQKLIYAGKIPQDDTTLESYNI 64
Query: 65 AENSFVVVMLTK-----SKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ F+V+M+TK V S + V + ++ +S +T S A
Sbjct: 65 DDKKFLVIMVTKPKAPPPPVGPSDPTIVETEETPAEEPAATTESSSQSTSTPSTESAAAA 124
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
+ + + + A PA AP S G A S LV G V+
Sbjct: 125 GTNTTTTTTTTSSSQSSAASNTQSTPATQAAPGGS-----VGSAESLLVMGEEFNRMVEN 179
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
I++MG ++R V RALRA++NNP AV+YL GIP P Q
Sbjct: 180 IMEMG---YERSQVERALRASFNNPYTAVQYLVDGIPPNLEEP-------AAQPAQGGDG 229
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 299
+Q A + P+ +P L+FLR+ QF+ +R M+++NP
Sbjct: 230 GGEEQVVAEG-EADPDEDP-------------------LNFLRSQPQFEQMRQMIRSNPS 269
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN---------VLGQLASAMP 350
+L ++++G+ NP L+++IQ++Q F+R+ + G A P
Sbjct: 270 LLDAFIRQIGQTNPQLLQVIQQNQEAFVRMTERRGQFWRWKHSGGSGNQGGDGSGGRAAP 329
Query: 351 --QAVTVTPEEREAIERLEAMG-FDRALVLEVFFACNKNEELAANYLLDHMHE 400
A+ V+P++R+AIERL+A+G F +V++ +FAC KNE LAA +L +
Sbjct: 330 GQNAILVSPQDRDAIERLKALGNFPEDVVIQAYFACEKNENLAAEFLFSQTWD 382
>gi|156086838|ref|XP_001610826.1| DNA repair protein Rad23, putatitve [Babesia bovis T2Bo]
gi|154798079|gb|EDO07258.1| DNA repair protein Rad23, putatitve [Babesia bovis]
Length = 313
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 122/404 (30%), Positives = 187/404 (46%), Gaps = 98/404 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL E++VK V ++ K +ET S P+ +Q LIH GKVLK L
Sbjct: 1 MKLKIKTLNNLEAEVDVKDGSSVEELMKIVETHLPS--MPSDRQKLIHSGKVLKRELLLS 58
Query: 61 EN-KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + + V+V+ K Q++TTS+ +T SQ
Sbjct: 59 DYADIKDGDKVIVIAQK-----------------QSETTSTV-------STQSQ------ 88
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
AP P P++ A S LV GS LE + +
Sbjct: 89 ---------------KAPVADDRTKAVDVPQPIN--------LAESTLVTGSELEMNIAR 125
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
I +MG + R V A+ AA+NNP+RAVE+L +G +P + S AG
Sbjct: 126 ICEMG---FPRAEVEAAMAAAFNNPDRAVEFLTTG-----TIPDTSMISNSSDAG----- 172
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 299
A+ L P M N + +++ FQ LR ++Q++PQ
Sbjct: 173 -----------VYDGGADMLRNIP-----MSDNLAS-----IQSHPAFQQLRQVIQSDPQ 211
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN--EPVEGGEGNVLGQLASAMPQAVTVTP 357
+LQ +L+ +G+ +P L++ I EHQ +F+ ++N + + G A P V +T
Sbjct: 212 VLQRLLENIGETDPELLQKIIEHQDEFMEMLNSSDDMNGFPS------ADDGPNFVHLTE 265
Query: 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 401
E +++ERLE +GF RA V+E F AC+KNEELAANYLL++ ++F
Sbjct: 266 AEIQSVERLEGLGFSRAAVIEAFLACDKNEELAANYLLENANDF 309
>gi|401626135|gb|EJS44097.1| rad23p [Saccharomyces arboricola H-6]
Length = 401
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 128/435 (29%), Positives = 195/435 (44%), Gaps = 85/435 (19%)
Query: 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA 65
K K ++++P + + + K + + SQ LI+ GKVL+D T+ E +
Sbjct: 7 KNFKKEKVPLDLEPSNTIFEAKTKLAQTASCE---ESQIKLIYSGKVLQDSKTVSECGLK 63
Query: 66 ENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSV 125
+ VV M+++ + + + + AP A TT+ ST+P +TS T APT
Sbjct: 64 DGDQVVFMISQKRSTKTKVTEPPIAPETAA-TTNPVRDDSTEPASTS-TDAPT------- 114
Query: 126 PESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAAS-NLVAGSNLEATVQQILDMG 184
A A P +S ++ G A++ V G+ T+++I++MG
Sbjct: 115 ------------AETSTAAEGSQPQEEQTSTTEPAGSASTPGFVVGTQRNETIERIMEMG 162
Query: 185 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA-- 242
+ RE V RALRAA+NNP+RAVEYL GIPE P +P Q A
Sbjct: 163 ---YPREEVERALRAAFNNPDRAVEYLLMGIPENLRQP------------DPQQQAVAAN 207
Query: 243 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS----------------QQ 286
+QPA A T+ A DLF Q G N +G L + ++ +
Sbjct: 208 EQPATAATTTEQPAED-DLFAQAA--QGGNTSSGALGSVGSAADAAQGGPPGSIGLTVED 264
Query: 287 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL---- 342
+LR +V NP+ L P+L+ + + P L I + F+ ++ E V +V+
Sbjct: 265 LLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGAD 324
Query: 343 -------------------GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFAC 383
GQ V TPE+ +AI RL +GF+R LV++V+FAC
Sbjct: 325 EMVEGEEVEVAGESSTAGPGQSEGESSFQVDYTPEDDQAISRLCELGFERDLVIQVYFAC 384
Query: 384 NKNEELAANYLL-DH 397
+KNEE AAN L DH
Sbjct: 385 DKNEEAAANILFSDH 399
>gi|453087458|gb|EMF15499.1| UV excision repair protein Rad23 [Mycosphaerella populorum SO2202]
Length = 392
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/269 (38%), Positives = 144/269 (53%), Gaps = 50/269 (18%)
Query: 165 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 224
S L G A + + MG + R+ + A+RAA+ NP+RAVEYL +GIPE
Sbjct: 135 SALAMGEQRAAAIAGMEAMG---FARDQIDAAMRAAFFNPDRAVEYLLNGIPESARQEQR 191
Query: 225 ARASAGGQAGNPPAQTQAQQPA--APAPTSGPNAN--PLDLFPQGLPNMGSNAG------ 274
A A++ PA TQ QQPA A A T+ A+ P++LF G G
Sbjct: 192 AAAAS-----PQPAPTQGQQPADTAGAETTQQQASDEPVNLFEAAAQAGGGGRGGAGGRG 246
Query: 275 --------------------AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPH 314
+ LDFLRN+ QFQ LRT+VQ PQ+L+P+LQ + NP
Sbjct: 247 AGDLGALGGGRGGAQGGQTESSQLDFLRNNPQFQQLRTVVQQQPQMLEPILQSVAAGNPQ 306
Query: 315 LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGF 371
L ++I +H F++L+ E + G+ A+P Q ++VT EER+AIERL +GF
Sbjct: 307 LAQIITQHPEQFMQLLAE--DAGDD-------VAIPPGAQEISVTAEERDAIERLCRLGF 357
Query: 372 DRALVLEVFFACNKNEELAANYLLDHMHE 400
DR LV++ +FAC+KNEELAAN+L D E
Sbjct: 358 DRDLVVQAYFACDKNEELAANFLFDQPDE 386
>gi|401840717|gb|EJT43420.1| RAD23-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 397
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 127/435 (29%), Positives = 194/435 (44%), Gaps = 89/435 (20%)
Query: 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA 65
K K ++++P + + + K + S SQ LI+ GKVL+D T+ E +
Sbjct: 7 KNFKKEKVPLDLEPSNTIFEAKTKLAQ---STSCEESQIKLIYSGKVLQDSKTVSECGLK 63
Query: 66 ENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSV 125
+ VV M+++ K + + + AAP A T + P++ Q T ++ P
Sbjct: 64 DGDQVVFMISQKKSTKTKVTEPPAAPET-ATTVPAGEPSTEQATASADAPTA-------- 114
Query: 126 PESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGG 185
PAA P P SS+ + V G+ T+++I++MG
Sbjct: 115 ------PAAEELQPQEEP---------SSNTEQAESVSTPGFVVGTQRNETIERIMEMG- 158
Query: 186 GSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ-TQAQQ 244
+ RE V RALRAA+NNP+RAVEYL GIPE PP + A PP T A+Q
Sbjct: 159 --YPREEVERALRAAFNNPDRAVEYLLMGIPENLR-PPEPQQQAVAPTEQPPTTATTAEQ 215
Query: 245 PAAPAPTSGPNANPLDLFPQGLPNMGSNAGA------------------GTLDFLRNSQQ 286
PA DLF Q G N + G++ +
Sbjct: 216 PAED-----------DLFAQAA--QGGNTSSGALGSAGGAADAAQGGPPGSIGL--TVED 260
Query: 287 FQALRTMVQANPQILQPMLQELGKQNPH---------------LMRLIQEHQTDFLRLIN 331
+LR +V NP+ L P+L+ + + P L+ + ++ D + +
Sbjct: 261 LLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGAD 320
Query: 332 EPVEGGEGNVLGQLASAMPQ--------AVTVTPEEREAIERLEAMGFDRALVLEVFFAC 383
+ VEG + V G+ A+A P+ V TPE+ +AI RL +GF+R LV++V+FAC
Sbjct: 321 DMVEGEDIEVAGEGAAAGPEQAEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFAC 380
Query: 384 NKNEELAANYLL-DH 397
+KNEE AAN L DH
Sbjct: 381 DKNEEAAANILFSDH 395
>gi|259145863|emb|CAY79123.1| Rad23p [Saccharomyces cerevisiae EC1118]
gi|323349008|gb|EGA83243.1| Rad23p [Saccharomyces cerevisiae Lalvin QA23]
Length = 408
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 126/433 (29%), Positives = 198/433 (45%), Gaps = 74/433 (17%)
Query: 6 KTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA 65
K K ++++P + + + K + S SQ LI+ GKVL+D T+ E +
Sbjct: 7 KNFKKEKVPLDLEPSNTILETKTKLAQ---SISCEESQIKLIYSGKVLQDSKTVSECGLK 63
Query: 66 ENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSV 125
+ VV M+++ K + +T + PP + + TT P +
Sbjct: 64 DGDQVVFMVSQKKST---------------KTKVTEPPIAPESATT---------PGREN 99
Query: 126 PESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAAS-NLVAGSNLEATVQQILDMG 184
A P + APA P ++ ++ A++ V G+ T+++I++MG
Sbjct: 100 STEASPSTDASAAPAATAPEGSQPQEEQTATTERTESASTPGFVVGTERNETIERIMEMG 159
Query: 185 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQ 244
+ RE V RALRAA+NNP+RAVEYL GIPE P + +A A T A+Q
Sbjct: 160 ---YQREEVERALRAAFNNPDRAVEYLLMGIPENLRQPEPQQQTAAAAEQPSTAATTAEQ 216
Query: 245 PAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS----------------QQFQ 288
P+ A T+ A DLF Q G NA +G L + +
Sbjct: 217 PSTAATTAEQPAED-DLFAQAA--QGGNASSGALGTTGGATDAAQGGPPGSIGLTVEDLL 273
Query: 289 ALRTMVQANPQILQPMLQELGKQNPH---------------LMRLIQEHQTDFLRLINEP 333
+LR +V NP+ L P+L+ + + P L+ + ++ D + ++
Sbjct: 274 SLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDM 333
Query: 334 VEGGEGNVLGQLASA-MPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNK 385
VEG + V G+ A+A + Q V TPE+ +AI RL +GF+R LV++V+FAC+K
Sbjct: 334 VEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDK 393
Query: 386 NEELAANYLL-DH 397
NEE AAN L DH
Sbjct: 394 NEEAAANILFSDH 406
>gi|74224982|dbj|BAE38204.1| unnamed protein product [Mus musculus]
Length = 322
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 111/350 (31%), Positives = 164/350 (46%), Gaps = 86/350 (24%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K PAP A P
Sbjct: 65 HIDEKNFVVVMVTKAKAGQG-------------------------------IPAPPEASP 93
Query: 123 QSVPE-SAP-PPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQ-----------------A 163
+VPE S P PP + P P +P S + + A
Sbjct: 94 TAVPEPSTPFPPVLASGMSHPPPTSREDKSPSEESTTTTSPESISGSVPSSGSSGREEDA 153
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 223
AS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 154 ASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------- 203
Query: 224 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRN 283
S + G+ +QPA A AG L+FLR+
Sbjct: 204 ---GSPEPEHGSVQESQAPEQPATEA-----------------------AGENPLEFLRD 237
Query: 284 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 333
QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 238 QPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
>gi|448122735|ref|XP_004204517.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|448125012|ref|XP_004205075.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358249708|emb|CCE72774.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358350056|emb|CCE73335.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
Length = 366
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 120/423 (28%), Positives = 178/423 (42%), Gaps = 82/423 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K I+V+ D V K+ + + + ASQ ++ GKVL D TLE
Sbjct: 1 MQVIFKDFKKQKVPIDVELTDTVLSTKEKLAAEKDCE---ASQLKFVYSGKVLPDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E ++ M++K+K S+ T SS P +++P S +
Sbjct: 58 SLKIKEGDAIIFMISKTKKSA---------------TPSSEQPQASKPEKESSKESEDKG 102
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+P PA + ++ Q G E ++ I
Sbjct: 103 -----------------SPTPAAEEESGAGASGAQAGSIFAQ-------GDERENNIRNI 138
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP-PVARASAGGQAGNPPAQ 239
++MG ++R V ALRAA+NNP RAVEYL +GIPE P P AS+GG P +
Sbjct: 139 MEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESLQAPQPNYSASSGG--AQPAVE 193
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNM-------GSNAGAGTLDFLRNSQQFQALRT 292
++ G N LF +A G D L Q + LR
Sbjct: 194 AESTHNEDEENEHGEN-----LFEAAAAAAAQEGGAGDQDAAEGAGDDLNEENQMRLLRA 248
Query: 293 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG--------- 343
+Q NP+++QP+L++L NP + LIQ+ F+R G G L
Sbjct: 249 ALQTNPELIQPLLEQLAASNPQVAALIQQDPEGFIRSF-----LGSGEDLDFEFEEGEGD 303
Query: 344 ------QLASAMPQAVTV--TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
P V + T ++ AI RL +GFDR LV++V+ AC+KNEE+AA+ L
Sbjct: 304 AEGGESGGQGEQPGTVRIELTEQDESAINRLCELGFDRNLVIQVYMACDKNEEVAADILF 363
Query: 396 DHM 398
M
Sbjct: 364 RDM 366
>gi|260821380|ref|XP_002606011.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
gi|229291348|gb|EEN62021.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
Length = 315
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 126/234 (53%), Gaps = 65/234 (27%)
Query: 168 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA 227
V G+ E V ++ MG ++R+ V+ ALRA++NNP+RAVEYL +G+P
Sbjct: 133 VTGTAYETMVTSMMSMG---FERDQVVAALRASFNNPDRAVEYLLTGLP----------- 178
Query: 228 SAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF 287
PA P L+FLR+ QF
Sbjct: 179 -----------------PAMENP---------------------------LEFLRDQPQF 194
Query: 288 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN------V 341
+R ++++NP +L +LQ LG+ NP L++ I +HQ +F+ ++NEPVEG G V
Sbjct: 195 NNMRQLIRSNPTLLSALLQNLGQSNPQLLQHINDHQQEFIEMLNEPVEGEGGAAGSGPPV 254
Query: 342 LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ QL + + VTP+E+EAIERL+A+GFD LV++ +FAC+KNE LAAN+LL
Sbjct: 255 MEQLPTGQ-NVIPVTPQEKEAIERLKALGFDEGLVIQAYFACDKNENLAANFLL 307
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V KTL+ F+IE++ V +K+ +E +G + +PA+ LI+ GK+L+D L
Sbjct: 1 MQVTFKTLQQQTFKIEIEENATVKQLKEKVEGEKGKESFPAAGLKLIYAGKILQDDLPLS 60
Query: 61 ENKVAENSFVVVMLTK 76
+ K+ E +FVVVM+TK
Sbjct: 61 QYKIDEKNFVVVMVTK 76
>gi|190346878|gb|EDK39064.2| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 116/386 (30%), Positives = 182/386 (47%), Gaps = 48/386 (12%)
Query: 27 KKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGAST 86
K+ + QG + A Q L++ GKVL+D T+ ++KV E ++ M+ K K S
Sbjct: 17 KQKLAAEQGCE---AEQLKLVYSGKVLQDDKTITDSKVKEGDSIIFMVAKKKPVSD---- 69
Query: 87 VSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPA 146
A P + T+ A + T+ T S + A E++ + +
Sbjct: 70 --AKPETKTSETAGAGKSETKATEASTSTAGN--------ETSTSGNSGTSNTSGVSGSG 119
Query: 147 PAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPER 206
V+S D +G EA++Q I++MG ++R V ALRA++NNP R
Sbjct: 120 SGSGAVTSGGGD--------FASGDEREASIQNIMEMG---YERTQVEAALRASFNNPHR 168
Query: 207 AVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP--- 263
AVEYL +GIPE P ++ A+A G P A ++A A T G +LF
Sbjct: 169 AVEYLLTGIPESLQRPQISNAAASGAVSAPSAVSEADTSADADNTEGAE----NLFEAAA 224
Query: 264 ----QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLI 319
QG G+ +GA + Q + LRT +Q NP+++QP+L++L NP + LI
Sbjct: 225 AAAQQG--ESGAGSGAAGGADQGDDAQLRLLRTALQTNPELIQPLLEQLAASNPQVATLI 282
Query: 320 QEHQTDFLRLI---NEPVEGGEGNVLGQLASAMPQ----AVTVTPEEREAIERLEAMGFD 372
Q+ F+R E +E + A+ ++ ++ AI RL +GFD
Sbjct: 283 QQDPEAFVRTFLGEGEDIEFDDAEGELAAGEGGLGAGEVAIQLSEQDESAIGRLCELGFD 342
Query: 373 RALVLEVFFACNKNEELAANYLLDHM 398
R LV++V+ AC+KNEE+AA+ L M
Sbjct: 343 RNLVIQVYIACDKNEEVAADILFRDM 368
>gi|449017046|dbj|BAM80448.1| nucleotide excision repair protein yeast rad23/ human HHR23A
homolog [Cyanidioschyzon merolae strain 10D]
Length = 430
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 127/439 (28%), Positives = 203/439 (46%), Gaps = 65/439 (14%)
Query: 1 MKVFVKTLKGTHFEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQ--MLIHQGKVLKDVT 57
M++ KTL + ++ + P+ V ++K+ + + PA Q LI G+VL D T
Sbjct: 1 MRLTFKTLDNKNLSLDGISPDTTVEELKRELGGREEFRWDPARTQEARLIFAGRVLSDPT 60
Query: 58 -TLEENKVAENSFVVVMLTK-SKVSSSGASTVSAAPAN-----QAQTTSSAPPTSTQPTT 110
L + + ++ F+VVM + + S ++VS+A A QA S A ++T +
Sbjct: 61 QKLADCGMQDDDFLVVMPPRVATQRSRKTASVSSADAQLKTPLQAGLASEATDSATIASE 120
Query: 111 TSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAG 170
S+ P +PP SV SA A PA + A + P ++ S G A+S L G
Sbjct: 121 ASRG-IPADSPPASV--SAKSSGA---TPAESGALSQTPQVEGTTTS---GIASSGLAVG 171
Query: 171 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA--VPPVARAS 228
+ ++ DMG +D ++ RA+RAA+ NPERA+EYL +G P T P+ +
Sbjct: 172 DEYSLYMNRMRDMG---FDDGSIERAMRAAHYNPERAIEYLCNGFPANTESLTEPLNDEA 228
Query: 229 AGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 288
+ PAQ Q + PA P LD +R F
Sbjct: 229 RRPEHQTLPAQAGMDQTSRPAEAVHPELQ---------------QSRSELDIIRRLPHFA 273
Query: 289 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE-GNVLGQLAS 347
LR +Q +P +Q +L EL + NP L+ +IQ +Q DF+ ++NEPV E G + QL
Sbjct: 274 LLRRAIQQDPSQIQSLLAELRRMNPRLLDIIQRNQADFINMLNEPVTDEEAGREMRQLRE 333
Query: 348 AMPQ---------------------AVTVTPEEREAIERLEA----MGFDRALVLEVFFA 382
+ Q + V+ EE E + +LE MG R L+V+ +
Sbjct: 334 LVAQQGRGNMYAGADAPSMEPTNAIRIEVSQEEAEQLRQLEQMMEPMGVSRDTCLQVWLS 393
Query: 383 CNKNEELAANYLLDHMHEF 401
C++N ELAA +L+D++ ++
Sbjct: 394 CDRNTELAAMHLMDNLEDY 412
>gi|84998362|ref|XP_953902.1| DNA repair protein (RAD23 ) [Theileria annulata]
gi|65304900|emb|CAI73225.1| DNA repair protein (RAD23 homologue), putative [Theileria annulata]
Length = 328
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 189/408 (46%), Gaps = 85/408 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP---ASQQMLIHQGKVLKDVT 57
M + VKTLK +++V V D+ + ++ +P A LIH GK+LK
Sbjct: 1 MNLKVKTLKNVQVDVDVPDTASVEDLMNKV-----AESFPNMQADSLKLIHAGKILKKEL 55
Query: 58 TLEE-NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTT-SQTP 115
L++ + + + V+V+ +K+ S P + P + S T
Sbjct: 56 LLKDYSDIKDGDKVIVISSKT----------------------SDPSKNQDPNSQPSSTT 93
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEA 175
PT PPQ PP P P+ V S + Y +S V GS LE
Sbjct: 94 TPTSKPPQ------PPTQDDTPN-------QPSSGNVVSEQT--YENVSSKFVMGSELEQ 138
Query: 176 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 235
++ +I +MG ++R V RA+ AA+NNP+RAVE+L +G N
Sbjct: 139 SINRICEMG---FERPLVERAMAAAFNNPDRAVEFLSTG--------------------N 175
Query: 236 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 295
PA ++ PN N +L G AG L L++ F+ L V+
Sbjct: 176 IPA------------SNMPNINAQNL---ATAEHGDPAGDDVLQMLQSHPMFEQLIQAVR 220
Query: 296 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTV 355
++P +LQ ML+ LG+ NP L++ I + Q +F+ L++ P +T+
Sbjct: 221 SDPNLLQQMLENLGQTNPELLQAIIQRQDEFVELLSSSARAAATADQYSTTENNPNIITL 280
Query: 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
TP E E+I+RLE +GF R V+E + AC+KNEELAANYLL++ ++F++
Sbjct: 281 TPVEMESIQRLEGLGFSRPAVIEAYLACDKNEELAANYLLENFNDFQE 328
>gi|24638591|ref|NP_651918.2| Rad23, isoform A [Drosophila melanogaster]
gi|442614351|ref|NP_001259052.1| Rad23, isoform C [Drosophila melanogaster]
gi|4928456|gb|AAD33594.1|AF132147_1 DNA repair protein Rad23 [Drosophila melanogaster]
gi|7304320|gb|AAF59352.1| Rad23, isoform A [Drosophila melanogaster]
gi|220942642|gb|ACL83864.1| Rad23-PA [synthetic construct]
gi|440218136|gb|AGB96542.1| Rad23, isoform C [Drosophila melanogaster]
Length = 414
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 104/343 (30%), Positives = 169/343 (49%), Gaps = 53/343 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V E F+VVMLT+ SSS + +S +N+ +T +
Sbjct: 60 SYNVDEKKFIVVMLTRDS-SSSNRNQLSVKESNKLTSTDDSK------------------ 100
Query: 121 PPQSVP-ESAPPPAAPAPAPAPAPAPAPAPAPVSS-------SVSDVYGQAASNLVAGSN 172
QS+P E A +P+ + P+SS + + + +A SNL+ G
Sbjct: 101 --QSMPCEEANHTNSPSSTNTEDSVLSRETRPLSSDELIGELAQASLQSRAESNLLMGDE 158
Query: 173 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ 232
TV +++MG + RE V RA+ A+YNNPERAVEYL +GIP + + +
Sbjct: 159 YNQTVLSMVEMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGT----FYNRLNE 211
Query: 233 AGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT 292
+ NP + P+ P P S +A + + + +FLR+ QF +R+
Sbjct: 212 STNP-----SLIPSGPQPASATSAE-----------RSTESNSDPFEFLRSQPQFLQMRS 255
Query: 293 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 335
++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P++
Sbjct: 256 LIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPID 298
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 35/43 (81%)
Query: 353 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ + ++++AIERL+A+GF ALVL+ +FAC KNEE AAN+LL
Sbjct: 366 IRLNRQDKDAIERLKALGFPEALVLQAYFACEKNEEQAANFLL 408
>gi|4928709|gb|AAD33695.1|AF136606_1 DHR23 [Drosophila melanogaster]
Length = 414
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 104/343 (30%), Positives = 169/343 (49%), Gaps = 53/343 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +K L+ F IE PE V ++KK I +G + Y A +Q LI+ G +L D T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V E F+VVMLT+ SSS + +S +N+ +T +
Sbjct: 60 SYNVDEKKFIVVMLTRDS-SSSNRNQLSVKESNKLTSTDDSK------------------ 100
Query: 121 PPQSVP-ESAPPPAAPAPAPAPAPAPAPAPAPVSS-------SVSDVYGQAASNLVAGSN 172
QS+P E A +P+ + P+SS + + + +A SNL+ G
Sbjct: 101 --QSMPCEEANHTNSPSSTNTEDSVLSRETRPLSSDELIGELAQASLQSRAESNLLMGDE 158
Query: 173 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQ 232
TV +++MG + RE V RA+ A+YNNPERAVEYL +GIP + + +
Sbjct: 159 YNQTVLSMVEMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEGT----FYNRLNE 211
Query: 233 AGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRT 292
+ NP + P+ P P S +A + + + +FLR+ QF +R+
Sbjct: 212 STNP-----SLIPSGPQPASATSAE-----------RSTESNSDPFEFLRSQPQFLQMRS 255
Query: 293 MVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 335
++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P++
Sbjct: 256 LIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPID 298
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 38/51 (74%), Gaps = 2/51 (3%)
Query: 353 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+ + ++++AIERL+A+GF ALVL+ +FAC KNEE AAN+LL FED
Sbjct: 366 IRLNRQDKDAIERLKALGFPEALVLQAYFACEKNEEQAANFLLS--SSFED 414
>gi|146418936|ref|XP_001485433.1| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 116/386 (30%), Positives = 181/386 (46%), Gaps = 48/386 (12%)
Query: 27 KKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGAST 86
K+ + QG + A Q L++ GKVL+D T+ ++KV E ++ M+ K K S
Sbjct: 17 KQKLAAEQGCE---AEQLKLVYSGKVLQDDKTITDSKVKEGDSIIFMVAKKKPVSD---- 69
Query: 87 VSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPA 146
A P + T+ A + T+ T S + A E++ + +
Sbjct: 70 --AKPETKTSETAGAGKSETKATEASTSTAGN--------ETSTSGNSGTSNTSGVSGSG 119
Query: 147 PAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPER 206
V+S D G EA++Q I++MG ++R V ALRA++NNP R
Sbjct: 120 SGSGAVTSGGGD--------FALGDEREASIQNIMEMG---YERTQVEAALRASFNNPHR 168
Query: 207 AVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFP--- 263
AVEYL +GIPE P ++ A+A G P A ++A A T G +LF
Sbjct: 169 AVEYLLTGIPESLQRPQISNAAASGAVSAPSAVSEADTSADADNTEGAE----NLFEAAA 224
Query: 264 ----QGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLI 319
QG G+ +GA + Q + LRT +Q NP+++QP+L++L NP + LI
Sbjct: 225 AAAQQG--ESGAGSGAAGGADQGDDAQLRLLRTALQTNPELIQPLLEQLAASNPQVATLI 282
Query: 320 QEHQTDFLRLI---NEPVEGGEGNVLGQLASAMPQ----AVTVTPEEREAIERLEAMGFD 372
Q+ F+R E +E + A+ ++ ++ AI RL +GFD
Sbjct: 283 QQDPEAFVRTFLGEGEDIEFDDAEGELAAGEGGLGAGEVAIQLSEQDESAIGRLCELGFD 342
Query: 373 RALVLEVFFACNKNEELAANYLLDHM 398
R LV++V+ AC+KNEE+AA+ L M
Sbjct: 343 RNLVIQVYIACDKNEEVAADILFRDM 368
>gi|344244513|gb|EGW00617.1| UV excision repair protein RAD23-like A [Cricetulus griseus]
Length = 316
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 140/276 (50%), Gaps = 74/276 (26%)
Query: 163 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 222
AAS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 79 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------ 129
Query: 223 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 282
S + G+ +QPA A AG L+FLR
Sbjct: 130 ----GSPEPEHGSVQESQVPEQPAVEA-----------------------AGENPLEFLR 162
Query: 283 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEG 336
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP +
Sbjct: 163 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 222
Query: 337 GEGNVLGQLASAMPQA--VTVTPEEREAIER---------------------------LE 367
EG V G + PQ + VTP+E+EAIER L+
Sbjct: 223 VEGEV-GAIGEEAPQMNYIQVTPQEKEAIERVRSLAKEPLMVGSPMLPSFLPLPIFPQLK 281
Query: 368 AMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 282 ALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 315
>gi|4261672|gb|AAD13972.1|S65964_1111 Unknown [Saccharomyces cerevisiae]
gi|347495|gb|AAA34935.1| UV excision repair protein [Saccharomyces cerevisiae]
gi|347499|gb|AAA34938.1| UV excision repair protein [Saccharomyces cerevisiae]
gi|430824|gb|AAB28441.1| RAD23 [Saccharomyces cerevisiae]
Length = 398
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 119/397 (29%), Positives = 182/397 (45%), Gaps = 81/397 (20%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D T+ E + + VV M+++ K + +T +
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST---------------KTKVTE 84
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYG 161
PP + + TT P + A P + APA P ++ ++
Sbjct: 85 PPIAPESATT---------PGRENSTEASPSTDASAAPAATAPEGSQPQEEQTATTERTE 135
Query: 162 QAAS-NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 220
A++ V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 136 SASTPGFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLR 192
Query: 221 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 280
P + +A A T A+QPA DLF Q G NA +G L
Sbjct: 193 QPEPQQQTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGT 239
Query: 281 LRNS----------------QQFQALRTMVQANPQILQPMLQELGKQNPH---------- 314
+ + +LR +V NP+ L+P+L+ + + P
Sbjct: 240 TGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNPEALRPLLENISARYPQLREHIMANPE 299
Query: 315 -----LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEERE 361
L+ + ++ D + ++ VEG + V G+ A+A + Q V TPE+ +
Sbjct: 300 VFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQ 359
Query: 362 AIERLEAMGFDRALVLEVFFACNKNEELAANYLL-DH 397
AI RL +GF+R LV++V+FAC+KNEE AAN L DH
Sbjct: 360 AISRLCELGFERDLVIQVYFACDKNEEAAANILFSDH 396
>gi|242079575|ref|XP_002444556.1| hypothetical protein SORBIDRAFT_07g023746 [Sorghum bicolor]
gi|241940906|gb|EES14051.1| hypothetical protein SORBIDRAFT_07g023746 [Sorghum bicolor]
Length = 184
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/198 (51%), Positives = 117/198 (59%), Gaps = 24/198 (12%)
Query: 77 SKVSSSGASTVSAA--PANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSV---PESAPP 131
+K SSSGAST +AA PA Q PA V P SV P AP
Sbjct: 1 AKASSSGASTATAAKVPATPGQVCGH--------------PAAPVVPATSVARTPTQAPV 46
Query: 132 PAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRE 191
A P+ P APA +S +DVY QAASNLV+G+NLE +QQILDMGGG+W+R+
Sbjct: 47 ATAETAPPSAQPQAAPAATLAASGDADVYSQAASNLVSGNNLEQIIQQILDMGGGTWERD 106
Query: 192 TVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN----PPAQTQAQQPAA 247
TV+RALRAAYNNPERA++YLYSGIP PPVA A AGGQ N PAQ P
Sbjct: 107 TVVRALRAAYNNPERAIDYLYSGIPVNVETPPVAGAPAGGQQTNQQAPSPAQPAVASPVQ 166
Query: 248 PAPTSG-PNANPLDLFPQ 264
P+ S P+ANPL LFPQ
Sbjct: 167 PSAASARPDANPLILFPQ 184
>gi|398364251|ref|NP_010877.3| Rad23p [Saccharomyces cerevisiae S288c]
gi|418413|sp|P32628.1|RAD23_YEAST RecName: Full=UV excision repair protein RAD23
gi|409247|gb|AAA16070.1| DNA repair protein [Saccharomyces cerevisiae]
gi|603642|gb|AAB65005.1| Rad23p [Saccharomyces cerevisiae]
gi|51013487|gb|AAT93037.1| YEL037C [Saccharomyces cerevisiae]
gi|151944674|gb|EDN62933.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
gi|190405529|gb|EDV08796.1| UV excision repair protein RAD23 [Saccharomyces cerevisiae RM11-1a]
gi|285811588|tpg|DAA07616.1| TPA: Rad23p [Saccharomyces cerevisiae S288c]
gi|323309458|gb|EGA62674.1| Rad23p [Saccharomyces cerevisiae FostersO]
gi|323333880|gb|EGA75269.1| Rad23p [Saccharomyces cerevisiae AWRI796]
gi|349577621|dbj|GAA22789.1| K7_Rad23p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765999|gb|EHN07500.1| Rad23p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299909|gb|EIW11001.1| Rad23p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 398
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 119/397 (29%), Positives = 181/397 (45%), Gaps = 81/397 (20%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D T+ E + + VV M+++ K + +T +
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST---------------KTKVTE 84
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYG 161
PP + + TT P + A P + APA P ++ ++
Sbjct: 85 PPIAPESATT---------PGRENSTEASPSTDASAAPAATAPEGSQPQEEQTATTERTE 135
Query: 162 QAAS-NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 220
A++ V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 136 SASTPGFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLR 192
Query: 221 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 280
P + +A A T A+QPA DLF Q G NA +G L
Sbjct: 193 QPEPQQQTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGT 239
Query: 281 LRNS----------------QQFQALRTMVQANPQILQPMLQELGKQNPH---------- 314
+ + +LR +V NP+ L P+L+ + + P
Sbjct: 240 TGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPE 299
Query: 315 -----LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEERE 361
L+ + ++ D + ++ VEG + V G+ A+A + Q V TPE+ +
Sbjct: 300 VFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQ 359
Query: 362 AIERLEAMGFDRALVLEVFFACNKNEELAANYLL-DH 397
AI RL +GF+R LV++V+FAC+KNEE AAN L DH
Sbjct: 360 AISRLCELGFERDLVIQVYFACDKNEEAAANILFSDH 396
>gi|256273801|gb|EEU08724.1| Rad23p [Saccharomyces cerevisiae JAY291]
Length = 398
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 119/397 (29%), Positives = 181/397 (45%), Gaps = 81/397 (20%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D T+ E + + VV M+++ K + +T +
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST---------------KTKVTE 84
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYG 161
PP + + TT P + A P + APA P ++ ++
Sbjct: 85 PPIAPESATT---------PGRENSTEASPSTDASAAPAATAPEGSQPQEEQTATTEGTE 135
Query: 162 QAAS-NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 220
A++ V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 136 SASTPGFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLR 192
Query: 221 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 280
P + +A A T A+QPA DLF Q G NA +G L
Sbjct: 193 QPEPQQQTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGT 239
Query: 281 LRNS----------------QQFQALRTMVQANPQILQPMLQELGKQNPH---------- 314
+ + +LR +V NP+ L P+L+ + + P
Sbjct: 240 TGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPE 299
Query: 315 -----LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEERE 361
L+ + ++ D + ++ VEG + V G+ A+A + Q V TPE+ +
Sbjct: 300 VFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQ 359
Query: 362 AIERLEAMGFDRALVLEVFFACNKNEELAANYLL-DH 397
AI RL +GF+R LV++V+FAC+KNEE AAN L DH
Sbjct: 360 AISRLCELGFERDLVIQVYFACDKNEEAAANILFSDH 396
>gi|426387417|ref|XP_004060165.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 3
[Gorilla gorilla gorilla]
gi|194375626|dbj|BAG56758.1| unnamed protein product [Homo sapiens]
Length = 198
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/233 (39%), Positives = 132/233 (56%), Gaps = 47/233 (20%)
Query: 179 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 238
+I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 4 EIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQE 50
Query: 239 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 298
++QPA A AG L+FLR+ QFQ +R ++Q NP
Sbjct: 51 SQVSEQPATEA-----------------------AGENPLEFLRDQPQFQNMRQVIQQNP 87
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA 352
+L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ
Sbjct: 88 ALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQM 146
Query: 353 --VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+ VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 147 NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 197
>gi|297276258|ref|XP_001110103.2| PREDICTED: UV excision repair protein RAD23 homolog A [Macaca
mulatta]
Length = 276
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 103/316 (32%), Positives = 162/316 (51%), Gaps = 49/316 (15%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K ++ A+P ++++S PP PT+ P P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPA---PTSGMSHPQPAAR-- 119
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILD 182
E P AP +P P+ SS + AAS LV GS E + +I+
Sbjct: 120 ----EDKSPSEESAPTTSPESVSGSVPSSGSSGREE---DAASTLVTGSEYETMLTEIMS 172
Query: 183 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 242
MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+ +
Sbjct: 173 MG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQESQVS 219
Query: 243 QQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQ 302
+QPA + AG L+FLR+ QFQ +R ++Q NP +L
Sbjct: 220 EQPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQNPALLP 255
Query: 303 PMLQELGKQNPHLMRL 318
+LQ+LG++NP L+++
Sbjct: 256 ALLQQLGQENPQLLQV 271
>gi|367049660|ref|XP_003655209.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL 8126]
gi|347002473|gb|AEO68873.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL 8126]
Length = 389
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 142/421 (33%), Positives = 201/421 (47%), Gaps = 66/421 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K LK F I+ +P + VS +K+ I +G D P Q+ LI+ GK+LKD T+E
Sbjct: 1 MKITIKDLKQQRFTIDAEPTELVSALKQKISDERGWD--PKLQK-LIYSGKILKDEDTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV ++ K K + S+A A A + T P +QT A
Sbjct: 58 SYKIEEKGFVVCVVNKPKEPKPAPAAESSASAAPATPAPAQTATPAAPAAPAQTAGTPAA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P + S A P V S + GQ + +A NLEA
Sbjct: 118 APATPTPSRTAAAEPGVG-------------VGDSNTLAIGQERAEAIA--NLEA----- 157
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
MG ++R + A+RAA+ NPERAVEY+ +GIPE + SA A
Sbjct: 158 --MG---FERSQIDAAMRAAFYNPERAVEYILNGIPEN-----LQHTSARPAPAAAAAPA 207
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQ---------------------GLPNMGSNAGAGTLD 279
A A N N DL Q + + G G L+
Sbjct: 208 AAPAAPAAGGDDDGNVNLFDLAAQQGRGSGARGGAGADAGAGAAAAVAAAAAQQGFGNLE 267
Query: 280 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 339
FLR++ QFQ LR +VQ PQ+L+P+LQ+LG NPHL +LI ++ FL+L++E
Sbjct: 268 FLRHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPHLAQLIAQNPEQFLQLLSES------ 321
Query: 340 NVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 396
G + +P Q ++VT EER+AIERL +GF + ++ +FAC+KNEELAAN+L D
Sbjct: 322 ---GDDDAPLPHGAQQISVTEEERDAIERLVRLGFTQDQAIQAYFACDKNEELAANFLFD 378
Query: 397 H 397
Sbjct: 379 Q 379
>gi|126723729|ref|NP_001075850.1| protein RAD23 repair 23 (2L942) [Oryctolagus cuniculus]
gi|1857435|gb|AAB48442.1| oncogene [Oryctolagus cuniculus]
Length = 748
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/311 (33%), Positives = 153/311 (49%), Gaps = 59/311 (18%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++PE+ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 5 ITLKTLQQQTFKIRMEPEETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
++ E +FVVVM+TK+K A SSAPP ++ PT ++ A + A P
Sbjct: 65 RIDEKNFVVVMVTKAK----------------AGQGSSAPPEAS-PTAAPESSATSPAAP 107
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYG-----QAASNLVAGSNLEATV 177
S PP +P+ AP +P VS SV AAS LV GS E +
Sbjct: 108 ASGMSHPPPATREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETML 167
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 237
+I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP S + G+
Sbjct: 168 TEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP----------GSPEPEHGSVQ 214
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
++QPA + AG L+FLR+ QFQ +R ++Q N
Sbjct: 215 ESQVSEQPA------------------------TEAGENPLEFLRDQPQFQNMRQVIQQN 250
Query: 298 PQILQPMLQEL 308
P +L +L+
Sbjct: 251 PALLPALLRHC 261
>gi|46124779|ref|XP_386943.1| hypothetical protein FG06767.1 [Gibberella zeae PH-1]
Length = 359
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 128/422 (30%), Positives = 181/422 (42%), Gaps = 98/422 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P + + QGK+LKD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPSE-------------------------LFQGKILKDDETVG 35
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K K + S+ + A T + + + SQ A
Sbjct: 36 SYNIEEKGFVVCMVNKPKPTKPAESSAAPPATPAAPPTRTPAAPAAPAQSASQQAAV--- 92
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PA P P +D + S L GS + +
Sbjct: 93 -----------PATPTP----------------QRSADAGSEEPSGLAMGSQRTEAIANM 125
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
MG ++R + A+RAA+NNP+RAVEYL +GIP+ R + P A
Sbjct: 126 EAMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPDNI------RQEQQQREAAPAAHA 176
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA----------------------GAGTL 278
A A G ++LF + G+NA G L
Sbjct: 177 AQPSQPAAAAPQGGEEGGVNLFDLAAQHGGTNARGGSGGNEAAAAAAAAAAGQGGDLGNL 236
Query: 279 DFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE 338
DFLR++ QFQ LR +VQ PQ+L+P+LQ+LG NP L LI + FL+L+ E +
Sbjct: 237 DFLRHNAQFQQLRQIVQQQPQMLEPILQQLGAGNPQLAELIASNPDQFLQLLGEYADDD- 295
Query: 339 GNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L
Sbjct: 296 --------VPLPPGAQAISVTEEERDAIERLCRLGFDRDAAIQAYFACDKNEELAANFLF 347
Query: 396 DH 397
D
Sbjct: 348 DQ 349
>gi|399218138|emb|CCF75025.1| unnamed protein product [Babesia microti strain RI]
Length = 334
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/425 (27%), Positives = 180/425 (42%), Gaps = 121/425 (28%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVY--PASQQMLIHQGKVLKDVTT 58
MK+ TLK +EV P D V + I GS + AS+ LIH GK+LK
Sbjct: 1 MKLIACTLKNVETCVEVDPSDTVDALTNKI----GSSLNNASASKMRLIHAGKILKMEQK 56
Query: 59 LEE-NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
+ + + + + ++V+ +K Q+ A
Sbjct: 57 ISDYSDIKDGDKIIVLFSK------------------------------------QSEAS 80
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATV 177
T+A P P S P A P P P P + L+ G LE +
Sbjct: 81 TIANPTPAPTSTPIADANTSPPKPIPTTDP-----------------NALLMGEELEKAI 123
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 237
I++MG +D E+V A+ AA+NNP RA+E L R +
Sbjct: 124 NGIVEMG---FDVESVKAAMSAAFNNPNRAIELL-------------TRHEVDVSDHDTH 167
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
Q+ Q T + L +G LD LR F+ +R +V++N
Sbjct: 168 ---QSVQTTVSISTICYKNHEL---------------SGVLDELRQHPMFEQMRAIVRSN 209
Query: 298 PQILQPMLQELGKQNPHLMRL---------------IQEHQTDFLRLINEPVEGGEGNVL 342
PQ L +L +G+ +P L+++ I E+Q +F++L++EPV G G+ +
Sbjct: 210 PQTLPQILSLIGQSDPSLLQVSLTIITYLIYYPYIAITENQEEFIQLLSEPVLGTSGDFI 269
Query: 343 GQLASAMPQAVTVTPEEREAIER------LEAMGFDRALVLEVFFACNKNEELAANYLLD 396
Q++T+TPEE E+I R LE +GF R +E F AC+KNEE+AANYLL+
Sbjct: 270 D------AQSITLTPEEMESINRVSDTIYLEGLGFSRPAAVEAFLACDKNEEMAANYLLE 323
Query: 397 HMHEF 401
++ ++
Sbjct: 324 NIADY 328
>gi|308510422|ref|XP_003117394.1| CRE-RAD-23 protein [Caenorhabditis remanei]
gi|308242308|gb|EFO86260.1| CRE-RAD-23 protein [Caenorhabditis remanei]
Length = 323
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 127/409 (31%), Positives = 185/409 (45%), Gaps = 98/409 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V +TL +F +E+ E +++VK + + +G D P Q+ LI+ GK+L D T +
Sbjct: 3 LSVAFRTLTQLNFHLELNEEQTIAEVKALVASERGDDYAPELQK-LIYNGKILDDATKVG 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + FVVVML K KV T+ +P +T+ + AP V
Sbjct: 62 EVGFDSSKFVVVMLAKKKV------------------------TAAEPASTATSSAPVV- 96
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
Q S P APA P PA A ++S D TV I
Sbjct: 97 --QENAPSTPAAPAPASIADPVPAAPAAAEQLTSQQED-----------------TVSAI 137
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
MG +DRE I ALRAA+ N +RAVE+L +GIPE
Sbjct: 138 TGMG---YDREQTIAALRAAFWNADRAVEFLLTGIPEDVV-------------------- 174
Query: 241 QAQQPA---APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
Q+P APA + +AN L+ L N Q +R M+Q N
Sbjct: 175 -DQEPLLADAPAVENEEDAN------------------DDLNMLANMPQLGEIRNMIQQN 215
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN--EPVEGG--EGNVLGQLASAMPQAV 353
P++L +LQ+L NP L++ IQ +Q F+ ++N P GG EGN Q +
Sbjct: 216 PEMLAAVLQQLAAVNPRLVQTIQNNQQAFMDILNGSAPPAGGVEEGN--AQARQPRRHVI 273
Query: 354 TVTPEEREAIERLEAMGFD--RALVLEVFFACNKNEELAANYLLDHMHE 400
++PEE EAI R++++ + ALV+E +FAC+KNEE A N++ + E
Sbjct: 274 HLSPEEAEAIARIKSIVSNAPEALVVEAYFACDKNEEAAINFIFSSLDE 322
>gi|426197465|gb|EKV47392.1| hypothetical protein AGABI2DRAFT_192582 [Agaricus bisporus var.
bisporus H97]
Length = 404
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/279 (35%), Positives = 138/279 (49%), Gaps = 59/279 (21%)
Query: 165 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 224
S + G+ L+ T+Q +++MG +DRE V+RALRA+YNNP+RAVEYL +GIP
Sbjct: 145 SGFLTGAALQTTIQNMMEMG---FDREQVLRALRASYNNPDRAVEYLMTGIP-------- 193
Query: 225 ARASAGGQAGNPPAQTQAQQ--PAAPAPTSGPNANPLDLF-----------------PQG 265
A +A PP + Q PAAP S P +N PQ
Sbjct: 194 --AHLEAEAAGPPRTSSTTQSNPAAP---SAPQSNSPAAPAPAPATAPAAAAPPANQPQN 248
Query: 266 LPNMGSNAGAGT---------------------LDFLRNSQQFQALRTMVQANPQILQPM 304
L + G L L + Q Q LR +V+ NP ++QP+
Sbjct: 249 LFQLAQQQQTGGGGGAAAGMGGMGGMGGMGAPDLAALAANPQIQQLREIVRQNPALIQPL 308
Query: 305 LQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIE 364
+Q+L QNP + + + + L+L+ EG G+ Q ++VT EEREAI
Sbjct: 309 IQQLAAQNPQMAQALAANPDMLLQLLGAGEGDEEGGPEGE-VPPGAQVISVTVEEREAIA 367
Query: 365 RLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
RLEA+GF R VLE +FAC+KNEELAANYL + F+D
Sbjct: 368 RLEALGFPRHAVLEAYFACDKNEELAANYLFE--GHFDD 404
>gi|336371729|gb|EGO00069.1| hypothetical protein SERLA73DRAFT_167911 [Serpula lacrymans var.
lacrymans S7.3]
Length = 380
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 138/253 (54%), Gaps = 22/253 (8%)
Query: 165 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT-AVPP 223
++ V G L TV+ +++MG ++RE V+RALRA+YNNP+RAVEYL++GIP A
Sbjct: 135 NSFVTGEVLNTTVRNMMEMG---FEREQVMRALRASYNNPDRAVEYLFNGIPAHLEAEAA 191
Query: 224 VARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLF---------PQGLPNMGSN-- 272
A A A AP P P P +LF QG G+N
Sbjct: 192 GPAAPPAQPPAGGGAAPAAAPAPAPQPAVPPPNQPQNLFQLAQQQQQQQQGPATGGANPF 251
Query: 273 AGAGTLDF--LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI 330
GAG +D LR++ Q Q LR +V ANPQ+ QP++Q+L NP ++ ++ ++L+
Sbjct: 252 GGAGPIDMAALRDNPQVQHLRELVAANPQLAQPIIQQLAASNPQFAQMFAQNPEALMQLL 311
Query: 331 NEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 390
+G Q + VTPEE+ AIERLEA+GF R V+E +FAC+KNEELA
Sbjct: 312 M-----NQGEGGEGGLPPGAQYINVTPEEQAAIERLEALGFPRQAVIEAYFACDKNEELA 366
Query: 391 ANYLLDHMHEFED 403
ANYL + E +D
Sbjct: 367 ANYLFEGGFEDDD 379
>gi|410079523|ref|XP_003957342.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
gi|372463928|emb|CCF58207.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
Length = 379
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/416 (27%), Positives = 183/416 (43%), Gaps = 60/416 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + K K +E++ + D K + +++ D+ Q LI GKVLKD T+
Sbjct: 1 MNIIFKDFKKEKIPVELESSSTILDAKNKLASIKSCDI---DQIKLIFSGKVLKDDQTVS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ +N V++M++K K A P++T+ T
Sbjct: 58 SCGLKDNDQVIMMISKKK----------------------ATPSATKVT----------E 85
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASN--LVAGSNLEATVQ 178
PPQ E P P+ P+ A ++ ++ S V GS TV+
Sbjct: 86 PPQQSEEQ--PVQEPSQEQEPSGTTAEPAPIAPAAPVAAEPESTSTPGFVTGSERNETVE 143
Query: 179 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 238
+I++MG ++R+ V RALRAA+NNP+RAVEYL GIPE PP + +
Sbjct: 144 RIMEMG---YERDQVERALRAAFNNPDRAVEYLLMGIPENLQQPPPPQQESQSAETQQQQ 200
Query: 239 QTQAQQPAAPAP---TSGPNANPLDLFPQGLPNMGSNAGAGTLD-------FLRNSQQFQ 288
Q Q + P ++ DLF Q G+G +
Sbjct: 201 QQQQESERQNQPEAESTNEQYEGEDLFAQAAQGTRDTTGSGADSNASAPGSIGLTMEDLL 260
Query: 289 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA 348
ALR +V NP+ L P+L+ L + P L I + F+ ++ + V G N + +
Sbjct: 261 ALRQVVSGNPEALAPLLESLSTRYPQLREQIMANPEVFISMLLDAV-GDNLNAMENITEP 319
Query: 349 MPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
+ A + +T ++ +AI RL +GF+R LV++V+FAC+KNEE+AAN L +
Sbjct: 320 VENAEPTEAPSLDLTEDDEQAISRLCELGFERTLVIQVYFACDKNEEIAANMLFND 375
>gi|83033008|ref|XP_729289.1| DNA repair protein RAD23 [Plasmodium yoelii yoelii 17XNL]
gi|23486634|gb|EAA20854.1| putative DNA repair protein RAD23 [Plasmodium yoelii yoelii]
Length = 368
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 111/431 (25%), Positives = 188/431 (43%), Gaps = 96/431 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP---ASQQMLIHQGKVLKDVT 57
MK+ V+TL+ T EI V D + D+KK IE V +P +Q LI G +L
Sbjct: 1 MKIKVRTLQNTEEEINVDNNDTILDLKKKIENV-----FPEMACDKQKLIFSGNIL---- 51
Query: 58 TLEENK----VAENSFVVVMLTKSKV------SSSGASTVSAAPA--NQAQTTSSAPPTS 105
++E+K + EN V+VM+T+ + S+ A+ ++++ + N+ + S
Sbjct: 52 -IDEDKAVDILKENDIVIVMVTRKIITNKKNNSTKNANELASSDSLKNKDEKNSDDKNND 110
Query: 106 -TQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAA 164
T+ T T ++ P+S+
Sbjct: 111 KTKNTDTENKGNENISNPESI--------------------------------------- 131
Query: 165 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 224
L+ G L+ T+ I MG ++RE V +A+ AYNNP A++YL +G Q +
Sbjct: 132 --LLTGDKLKETIDNICAMG---FERELVQKAMTLAYNNPNVAIDYLTNGF--QDIIDDG 184
Query: 225 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS 284
S + P + + N N LD M N+ + LRNS
Sbjct: 185 HDISEMKDSSENP--NDRDENYSNLSNLLMNYNLLD--ENERQEMSVNSES-----LRNS 235
Query: 285 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ 344
F +R +NPQ + +L+ +G+ +P L+ I+E+Q +FL + + +G N
Sbjct: 236 PFFNIIRDAALSNPQRIPEILEMIGRSDPSLLEYIRENQNEFLNAL-QNYDGDNNNAEND 294
Query: 345 LASAMPQA--------------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 390
L A ++ E E++ +LE++GF + + LE F AC+KNEE+A
Sbjct: 295 LIPNYEYADETNQNNDNFNIPITSLNESEMESVRKLESLGFPKHVALEAFIACDKNEEMA 354
Query: 391 ANYLLDHMHEF 401
ANYL ++M+++
Sbjct: 355 ANYLFENMNDY 365
>gi|392576824|gb|EIW69954.1| hypothetical protein TREMEDRAFT_68394 [Tremella mesenterica DSM
1558]
Length = 379
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 139/253 (54%), Gaps = 23/253 (9%)
Query: 161 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQT 219
G ++S+ V G L+A + +++MG ++ + V+RALRA+YNNP+RAV+YL SG IPE
Sbjct: 130 GLSSSSFVTGPALQAAISSMVEMG---FEHDQVVRALRASYNNPDRAVDYLMSGNIPEVE 186
Query: 220 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPT----------SGPNANPLDLFPQGLPNM 269
P A A A P AAP+ T SG + +LF +
Sbjct: 187 GPAPAATAPPTQTAPTIPTPA-----AAPSQTPAAPAAQPAPSGSAGSAENLFATVARDR 241
Query: 270 GSNAGAG--TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFL 327
G++A A +L+ L NS Q Q LR MVQ NP ++ P+LQ++ NP L +LI +H
Sbjct: 242 GTSAPANVPSLEALGNSPQLQRLRQMVQQNPALIGPLLQQVAAHNPALAQLINQHPEAVY 301
Query: 328 RLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 387
+ V GGEG L + +T +E EA++RLE +GFDR +VL+ + C+KNE
Sbjct: 302 EWLG--VGGGEGEDDDDLMGPQTMRIDLTQQEAEAVQRLEQLGFDRQVVLQAYLLCDKNE 359
Query: 388 ELAANYLLDHMHE 400
ELAANYL + E
Sbjct: 360 ELAANYLFEQGEE 372
>gi|425766442|gb|EKV05052.1| UV excision repair protein (RadW), putative [Penicillium digitatum
PHI26]
gi|425781661|gb|EKV19612.1| UV excision repair protein (RadW), putative [Penicillium digitatum
Pd1]
Length = 377
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 140/422 (33%), Positives = 199/422 (47%), Gaps = 66/422 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+V+P + V +VK I +G Y A + +I+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQEKFVIDVEPSETVREVKVKIAQEKGE--YDAERMKVIYSGKILQDDKTVE 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V + P+ Q + SS P TPA
Sbjct: 59 SYNIQEKDFLVCL-----------------PSKQPKAASSTAPQ------VPSTPAARAP 95
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P AP AA AP A P+PA A S +G S L GS E Q+
Sbjct: 96 VSTPAPPPAPHAAAAAPLFAAPATPSPAGAAPPPSSGPAFGDP-SALTMGSAAEGAAAQM 154
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
MG + R + RA+RAA+ NP+RA+EYL +GIP+ + + + PA T
Sbjct: 155 EAMG---FARTDIDRAMRAAFYNPDRAIEYLLTGIPDN-----IQEQQQQQRQASEPAST 206
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG-----------------TLDFLRN 283
A APA SG + +LF G G +L+FLR+
Sbjct: 207 GA----APAAPSGGDEPHFNLFEAAAQAGGEGGGRSRGVAGAGAGTAGGEALGSLEFLRS 262
Query: 284 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG 343
+ FQ LR +VQ P +L+P+LQ++ NP + +I ++ FL+L+ L
Sbjct: 263 NPHFQQLRQLVQQQPHMLEPILQQVAAGNPQIASIIGQNSDQFLQLLG--------EELE 314
Query: 344 QLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
A+P QA++VT EER+AIERL +GF R V++ +FAC+KNEELAAN+L D E
Sbjct: 315 DEEGALPPGAQAISVTEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFDQPEE 374
Query: 401 FE 402
E
Sbjct: 375 DE 376
>gi|68066300|ref|XP_675133.1| DNA repair protein RAD23 [Plasmodium berghei strain ANKA]
gi|56494136|emb|CAH99316.1| DNA repair protein RAD23, putative [Plasmodium berghei]
Length = 368
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 113/428 (26%), Positives = 188/428 (43%), Gaps = 90/428 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ V+TL+ T EI V D +SD+KK IE V P +Q LI G +L +
Sbjct: 1 MKIKVRTLQNTEEEINVDSNDTISDLKKKIENVFPE--MPCDKQKLIFSGNIL-----MN 53
Query: 61 ENKVA----ENSFVVVMLTKSKVSSSGASTV--------SAAPANQAQTTSSAPPTS-TQ 107
E+KV EN V+VM+T+ ++S ++ S + N+ + S T+
Sbjct: 54 EHKVVDILKENDIVIVMVTRKIITSKKNNSTKNANELASSDSLKNKDEKNSDDKNNDKTK 113
Query: 108 PTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNL 167
T T + ++ P+S+ L
Sbjct: 114 NTDTENKESENISNPESI-----------------------------------------L 132
Query: 168 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARA 227
+ G L+ T+ I MG ++RE V +A+ AYNNP A++YL +G + +
Sbjct: 133 LTGDKLKETIDNICAMG---FERELVQKAMTLAYNNPNVAIDYLTNGFQD-----IIGDG 184
Query: 228 SAGGQAGNPPAQ-TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQ 286
+ +P + + + N N LD M N+ + LRNS
Sbjct: 185 HDISEIKDPSENPNERDEKYSNLSNLLMNYNLLD--ENERQEMPVNSES-----LRNSPF 237
Query: 287 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR-LINEPVEGG--EGNVL- 342
F +R +NPQ + +L+ +G+ +P L+ I+E+Q +FL L N + E +++
Sbjct: 238 FNIIRDAALSNPQRIPEILEMIGRSDPSLLEYIRENQNEFLNALQNYDTDNNNSENDLIP 297
Query: 343 --------GQLASAMPQAVTVTPE-EREAIERLEAMGFDRALVLEVFFACNKNEELAANY 393
Q +T E E E++ +LE++GF + + LE F AC+KNEE+AANY
Sbjct: 298 NYEYTDETNQNNDNFNIPITSLNESEMESVRKLESLGFPKHVALEAFIACDKNEEMAANY 357
Query: 394 LLDHMHEF 401
L ++M+++
Sbjct: 358 LFENMNDY 365
>gi|4336714|gb|AAD17913.1| repC-binding protein A [Dictyostelium discoideum]
Length = 341
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 118/397 (29%), Positives = 174/397 (43%), Gaps = 62/397 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +K + + EV + V+++K I S Q LI+ GK+L+D TLE
Sbjct: 1 MKVTIKNINKEIYVFEVNGDLTVAELKNLISEKHNQ---TPSWQTLIYSGKILEDKRTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ ++ F+ +M+ K + A + AP+ TT ST +T
Sbjct: 58 SYNITDSGFIXMMIKKPR----EAPATTPAPS----TTPHLNYISTNHHHYCRTNPNHXL 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ + P P P P + S S Q +S+ G+ LEAT++ I
Sbjct: 110 TNNTSTTTPTSVPTPTNNTPATPNPTPTTSSTPGSTSTTSPQQSSDFATGTELEATIKNI 169
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
DMG + R+ V+RALR +NN ERA+EYL SG N PA
Sbjct: 170 TDMG---FARDQVLRALRLTFNNAERAIEYLVSG--------------------NIPAAN 206
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+ G NP + LRN F LR + NP I
Sbjct: 207 DPEDEEEMEGGGGSGDNPFEA-------------------LRNHPHFNLLREAISKNPSI 247
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 360
+ +LQ+L + NP L+R IQE+ +F+RL G + + VT EE
Sbjct: 248 IPGILQQLAQTNPALVRQIQENPNEFIRLFQGDGNPG--------GNPGQFTLQVTQEES 299
Query: 361 EAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLD 396
EAI+RL+A+ G D++ V+E +FAC+KNEEL A+YL +
Sbjct: 300 EAIQRLQALTGMDKSTVIEAYFACDKNEELTASYLFE 336
>gi|194764815|ref|XP_001964524.1| GF23005 [Drosophila ananassae]
gi|190614796|gb|EDV30320.1| GF23005 [Drosophila ananassae]
Length = 318
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 176/400 (44%), Gaps = 94/400 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL ++E+ V +K+ + ++ + P Q LI+ G++++D L
Sbjct: 1 MKISIRTLDQRTIKLEMSDSQDVRALKQRLGSMPEVAI-PVESQQLIYGGRIMEDALPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+AE+ F+V+M G A PA A + PPT P T
Sbjct: 60 DYKIAEDKFIVLM---------GKKMPPAKPAGTA-AEENVPPT----------PPLTAG 99
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P ++ PP +S + A ++ Q++
Sbjct: 100 PSETRTHEIPP------------------------LSPAPALVMAPPPAPPSMTPNEQRV 135
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
D+ + + V ALRA++N+PERA+EYL SGIP+ P A A+A G A
Sbjct: 136 RDLMAMGYGEQEVRAALRASFNHPERAIEYLISGIPQNAPQP--ANATASGPA------- 186
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
PN P P +F +R M++ NP++
Sbjct: 187 -------------PNLQPWMSDP----------------------RFARVRDMLRQNPEL 211
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVL---GQLASAMPQAVTV 355
L+ +L L + +P I++HQ +FL +IN G GEG+ L ++ +A +T+
Sbjct: 212 LEVVLSRLAETDPSAFEAIRDHQDEFLSMINGSSAGSVGEGSDLSEDSEMDAASRHQITL 271
Query: 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
T EE A+ERL ++GF R L ++ + AC+KNEELAA+ L
Sbjct: 272 TSEEAAAVERLVSLGFHRDLAVQAYLACDKNEELAADILF 311
>gi|171686384|ref|XP_001908133.1| hypothetical protein [Podospora anserina S mat+]
gi|170943153|emb|CAP68806.1| unnamed protein product [Podospora anserina S mat+]
Length = 383
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 132/418 (31%), Positives = 195/418 (46%), Gaps = 70/418 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F IE +P D +S VK+ + G D PA Q+ LI+ GK+LKD T+E
Sbjct: 1 MKVNFKDLKQQKFTIEFEPTDLISTVKQKLSEDHGWD--PALQK-LIYSGKILKDEDTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV M++K K + S++ ++ T P +Q A
Sbjct: 58 SCKIEEKGFVVCMVSKPKAPKPAPAAESSSVVPATPAQAAPASTPAPPAAPAQVSNAASA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P + + AP + A A A A +N+EA
Sbjct: 118 APATPSPN-RTSGAPNDSSALAMGEQRAQAI-------------------ANMEA----- 152
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
MG ++R + A+RAA+ NPERAVEYL +GIPE V + +A + G+
Sbjct: 153 --MG---FERSQIDAAMRAAFFNPERAVEYLLTGIPEN-----VQQQTAAQRVGHAIPPP 202
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA------------------GTLDFLR 282
+ ++G A DL + L ++ + AG G L +LR
Sbjct: 203 APAAASPAPASAGEAAG--DLEGENLFDLAARAGGARSGSGGAAAAGASAQDLGNLSWLR 260
Query: 283 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 342
+ QFQ LR +VQ P +L+ +LQ+L NP L + I ++ FL+L++E
Sbjct: 261 QNAQFQQLRQVVQQQPGMLEQILQQLSAGNPQLAQTIAQNPEQFLQLLSEH--------- 311
Query: 343 GQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
G + +P ++VT EER+AIERL +GF + ++ +FAC KNEELAAN+L D
Sbjct: 312 GDDDAPLPPGAHQISVTEEERDAIERLTRLGFSQDQAIQAYFACEKNEELAANFLFDQ 369
>gi|195604818|gb|ACG24239.1| hypothetical protein [Zea mays]
Length = 98
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 76/90 (84%), Gaps = 3/90 (3%)
Query: 316 MRLIQEHQTDFLRLINEPVEGGEGN--VLGQLASAMPQAVTVTPEEREAIERLEAMGFDR 373
M+LIQE+Q +F+RLI+EP+EG E N +L Q+A A + + VTPEE EAI RLE MGFDR
Sbjct: 1 MQLIQENQAEFMRLISEPLEGDEENEMMLDQMADA-TETIAVTPEENEAILRLEGMGFDR 59
Query: 374 ALVLEVFFACNKNEELAANYLLDHMHEFED 403
ALVLEVFFACNKNE+LAANYLLDHMHEF++
Sbjct: 60 ALVLEVFFACNKNEQLAANYLLDHMHEFDN 89
>gi|189195060|ref|XP_001933868.1| DNA repair protein RAD23-like protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979747|gb|EDU46373.1| DNA repair protein RAD23-like protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 382
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 102/262 (38%), Positives = 143/262 (54%), Gaps = 37/262 (14%)
Query: 165 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 224
S L G EA + + MG + R + RA+RAA+ NP+RAVEYL +GIPE
Sbjct: 134 SALTMGGEREAAIANMESMG---FARADIDRAMRAAFFNPDRAVEYLLTGIPESALQEQA 190
Query: 225 ARASAGGQAG-NPPAQTQAQQPAAPAPTSGPNANPLDLF-----------PQGLPNMGSN 272
+A A P T A A AP+ P++LF P G GS
Sbjct: 191 QQAQARAPTSPTPAGNTGATATPANAPSGADE--PMNLFEAAAQAANRDRPSGGQRGGSA 248
Query: 273 AGA--------GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQT 324
GA +LDFLRN+ QFQ LR +VQ PQ+L+P+LQ++G NP L ++I ++
Sbjct: 249 PGATGGAALNANSLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQMIAQNPE 308
Query: 325 DFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFF 381
FL+L+ E + + +P QA++VT +EREAIERL +GF+R LV++ +F
Sbjct: 309 QFLQLLAEDADED---------APLPPGAQAISVTEDEREAIERLCRLGFERDLVIQAYF 359
Query: 382 ACNKNEELAANYLLDHMHEFED 403
AC+KNEELAAN+L D + +D
Sbjct: 360 ACDKNEELAANFLFDQPDDADD 381
>gi|444315840|ref|XP_004178577.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS 6284]
gi|387511617|emb|CCH59058.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS 6284]
Length = 404
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 119/440 (27%), Positives = 182/440 (41%), Gaps = 87/440 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +E+ + + K I + + D+ Q LI+ GK+LK+ T+
Sbjct: 2 VSLIFKDFKKEKIPLELDADSTIESAKGQIASEKNCDI---DQIKLIYSGKILKNDATIL 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + +N ++ M++K K + ASTV P S TT +T A
Sbjct: 59 NSGLKDNDHIIFMISKKKKKTEPASTVKVTE-----------PASV--TTNVETQAE--G 103
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P S P + P PA + A A S+ A V G+ T+Q+I
Sbjct: 104 TPNSDPSANATPEVPAATTSNAAAGDDTETTTSA--------ADPGFVVGTERNETIQRI 155
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
++MG + RE V ALRAA+NNP+RAVEYL GIPE +
Sbjct: 156 MEMG---YQREEVEAALRAAFNNPDRAVEYLLMGIPEHLQHQQPQQLQQTTIQTEGATSA 212
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD------FLRNSQQFQALRTMV 294
+ PA DLF Q G+ A + D + ALR +V
Sbjct: 213 NMELPAED-----------DLFAQAA--RGNQANQQSTDDTPPGSIGLTMEDLLALRQVV 259
Query: 295 QANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE---------------------- 332
NP+ L P+L+ L + P L I + F+ ++ E
Sbjct: 260 SGNPEALPPLLENLTTRYPQLREQIMANPEVFVSMLLEAVGDNLQHSLGNDLDGISELDQ 319
Query: 333 -PVEGGEGNVLGQLASAM-------PQA---------VTVTPEEREAIERLEAMGFDRAL 375
P G V + SA+ P A +++T ++ +AI RL +GF+R+L
Sbjct: 320 HPTANTNGEVTAEHDSAIVTETNEAPAAGEQPSNNYNISLTEQDEQAIGRLCELGFERSL 379
Query: 376 VLEVFFACNKNEELAANYLL 395
V++V+FAC+KNEE+AAN L
Sbjct: 380 VVQVYFACDKNEEIAANMLF 399
>gi|385306094|gb|EIF50024.1| rad23p [Dekkera bruxellensis AWRI1499]
Length = 421
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 127/463 (27%), Positives = 190/463 (41%), Gaps = 110/463 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K K F IEV+P D + K+ + Q D P Q ++ GK+LKD T E
Sbjct: 1 MKVIFKNFKKEKFPIEVEPSDSILSGKEKLSAAQ--DCQPG-QLKFVYSGKILKDDKTFE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
V + ++ M +K + S P +AQ S+
Sbjct: 58 FFNVKDGDQIIFMKSKLRKQKS-----KPEPKPEAQAXXGXAEXSS-------------- 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
E+A ++ PA A SS+ + + + S G + VQ I
Sbjct: 99 ------ENAAVESSSTSNXXSXPAQIXAENQESSTGAXEFTE--STFAIGRARQTAVQNI 150
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-------------------------- 214
+ MG ++RE V RAL AA+NNP+RAVEYL +G
Sbjct: 151 MGMG---FEREQVERALTAAFNNPDRAVEYLLNGIPESHHQASAPAPPAPAAEPSAEAAX 207
Query: 215 ------IPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGP------------NA 256
+ E P + +AG + ++++P A N
Sbjct: 208 EKSXGXVDEXQXTAPKNASEGNTEAG---SSGKSEEPVKIAENVENTNATATTXQTPXNP 264
Query: 257 NPLDLFPQGLP-----NMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQ 311
N +LF + N G N+ G D++ +LR ++Q P++ + +LQ++
Sbjct: 265 NSQNLFERAAAXAQGQNTGENSQEG--DYM------GSLRELLQQRPEMAEIVLQQMAXS 316
Query: 312 NPHLMRLIQEHQTDFLRLINE------------PVEGGEGNVLGQLASAMPQA----VTV 355
NP L +IQ + F+R I P E EG+ A +A + V
Sbjct: 317 NPQLAEVIQRNPEAFMRYITSGDQDALAESLGIPKEYLEGSGXVDDAEDGEEANVPRIEV 376
Query: 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL-DH 397
TPEE AI RL +GFDR+LV++V+FAC+KNEE+AAN L DH
Sbjct: 377 TPEENAAINRLCELGFDRSLVIQVYFACDKNEEMAANLLFSDH 419
>gi|221481235|gb|EEE19636.1| UV excision repair protein rad23, putative [Toxoplasma gondii GT1]
Length = 348
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 114/368 (30%), Positives = 177/368 (48%), Gaps = 31/368 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL E+EV E+ V +VK+ +E Q PA++Q L+H GK+L D ++
Sbjct: 1 MKLRIRTLSNEEAELEVGAEETVLNVKEKVE--QRWPHMPAARQKLVHAGKILADAQKIK 58
Query: 61 E-NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + + EN +VVM+TK+ + +S+ +A+ A + + S T + T
Sbjct: 59 DCSALKENDRLVVMVTKAVSQPAVSSSTAASAAPASAASPSPAETQRGSSAAGSTAGDGE 118
Query: 120 APPQSVPESAPPPAAPAPAPA-PAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQ 178
+ P + + + PA PA A +P+ AP ++S A S L G LE T+
Sbjct: 119 SAKSETPGGSGNASGNSGGPANPAHASSPSSAPDATSEGLSRAAAESALFTGPQLEETLT 178
Query: 179 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 238
++ MG + R A+RAA+NNP+RAVEYL +G+P P A GG + A
Sbjct: 179 HLVAMG---FPRSQAEEAMRAAFNNPDRAVEYLMNGMP------PEVSAMLGGDS----A 225
Query: 239 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 298
+TQ P + D P G LR+ F +R MVQANP
Sbjct: 226 ETQEAHGDVPPEEGDAEGDEDDENPLGA--------------LRHHPAFNQIRQMVQANP 271
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 358
+L +LQ +G NP L+ LI ++Q FL ++ GE G A P + +T E
Sbjct: 272 AMLPQVLQLIGNSNPQLLELITQNQDAFLEMLQSDQGEGETGAAGTGGFAAPGIIQMTAE 331
Query: 359 EREAIERL 366
E EA++R+
Sbjct: 332 EMEALQRV 339
>gi|219112521|ref|XP_002178012.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410897|gb|EEC50826.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
Length = 434
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 110/335 (32%), Positives = 148/335 (44%), Gaps = 80/335 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEI + V+DVK IE + A LIH GKVLKD ++
Sbjct: 1 MKLLVKTLKGEKFEIHAEESQTVADVKGIIEATKSE--LSAGTLKLIHSGKVLKDEDSIA 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ EN F+VVM+TK+K P + +P T TP P
Sbjct: 59 SAGIKENDFLVVMVTKAK-----------------------KPVAAKPAATP-TPVPAAT 94
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P PP A A + A A + DV +A +NL + EA V+
Sbjct: 95 PG--------PPVAAAASIETPAPTAAATPAAPTRADDVSAEAVANLTSMGFPEAEVK-- 144
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
LRAA+ NP+ AVE+L +GIPE VA A+A A N A T
Sbjct: 145 --------------HCLRAAHGNPDIAVEFLTNGIPE-----GVAEAAA---AMNTSAVT 182
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+ + SG L LRN QF LR +VQ+NPQ+
Sbjct: 183 SPSASSESSSGSGQ----------------------PLQALRNHPQFNDLRRLVQSNPQM 220
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 335
LQ +L ++G+Q P L++ I +Q FL+++NEPVE
Sbjct: 221 LQQVLTQIGQQQPQLLQEINANQALFLQIMNEPVE 255
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 351 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 398
Q + +T EE A++RL MGFDR+ + F AC+KNE LAAN L+D M
Sbjct: 357 QVLRLTEEEMAAVDRLAEMGFDRSEAAQAFLACDKNEALAANLLMDSM 404
>gi|241950849|ref|XP_002418147.1| UV excision repair protein, putative [Candida dubliniensis CD36]
gi|223641486|emb|CAX43447.1| UV excision repair protein, putative [Candida dubliniensis CD36]
Length = 430
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 125/456 (27%), Positives = 193/456 (42%), Gaps = 84/456 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K ++V+ D V K+ + +G D +SQ L++ GKVL+D LE
Sbjct: 1 MQIVFKDFKKQTVTLDVELTDSVLSTKEKLAQEKGCD---SSQIKLVYSGKVLQDDKNLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E + ++ M+ K+K +T + P T + +TSQ
Sbjct: 58 SYKLKEGASIIFMINKTK-----------------KTPTPVPETKSTTESTSQEQVQAQG 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASN---LVAGSNLEATV 177
S+ A A A A A +++ QA SN GS EA++
Sbjct: 101 STNESTSSSTSSTTTTTAAAAAAAAGAASTGTTTTSEQQPEQAVSNESTFAVGSEREASI 160
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE-------QTAVPPVARASAG 230
Q I++MG ++R V ALRAA+NNP RAVEYL +GIPE VP +
Sbjct: 161 QNIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESLQHPTPPVPVPAPVPTAPT 217
Query: 231 GQAGNPPAQTQAQQPAAPAPTSGP-----NANPLDLFPQGL-----PNMGSNAGAGTLDF 280
GQ QQ A G + +LF N G ++ GT
Sbjct: 218 GQQTERNTSETGQQGANEEHGDGDEEGEESTQHENLFEAAAAAAAATNQGDSSIGGTTSG 277
Query: 281 LRNS-----------------QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQ 323
+ QQ Q LR +Q+NP+++QP+L++L NP + LI +
Sbjct: 278 VGAGAGAGAGGEGDIGGLGDDQQMQLLRAALQSNPELIQPLLEQLAASNPQIASLISQDP 337
Query: 324 TDFLRLINEPVEG--GEGNVLG-------------------QLASAMPQAVTVTPEEREA 362
F+R+ + G G GN LG + + ++ ++ A
Sbjct: 338 EAFVRMF---LSGAPGSGNDLGFEFEDEGAGGAGGATTGGDEEEEEGTIRIQLSEQDNNA 394
Query: 363 IERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 398
I RL +GF+R +V++V+ AC+KNEE+AA+ L M
Sbjct: 395 INRLCELGFERDIVIQVYLACDKNEEVAADILFRDM 430
>gi|380094252|emb|CCC08469.1| putative RAD23 protein [Sordaria macrospora k-hell]
Length = 423
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 135/255 (52%), Gaps = 38/255 (14%)
Query: 174 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAVPP------V 224
E + I +M ++R + A+RAAYNNPERAVEYL +GIP +Q A
Sbjct: 177 EQRAEAIANMEAMGFERSQIDAAMRAAYNNPERAVEYLLNGIPANLQQQAASSRQPSAAP 236
Query: 225 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA--------- 275
A A A A P A AQ + A G + P++LF +G++AG
Sbjct: 237 AAAPAAAPAAAPAAAPAAQAASPAAAAGGDDEGPVNLFDLA-AQLGNSAGGRGARGAEGA 295
Query: 276 -------GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 328
G LDFLRN+ QFQ +R +VQ PQ+L+P+LQ+LG NP L ++I ++ FL
Sbjct: 296 GAEAAGLGNLDFLRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL- 354
Query: 329 LINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEE 388
N+LG+ + VT EER+AIERL +GF + ++ +FAC+K+EE
Sbjct: 355 -----------NLLGEGGEGGSVGIAVTEEERDAIERLTRLGFPQDQAIQAYFACDKDEE 403
Query: 389 LAANYLLDHMHEFED 403
LAAN+L D E +D
Sbjct: 404 LAANFLFDQGPEEDD 418
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F +E++P + ++ VK I +G + Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFTLEIEPTETIAKVKAKISEERG---WAPELQKLIYSGKILKDEETVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
K+ E FVV ++ K K ++
Sbjct: 58 SYKIEEKGFVVCVVNKPKTTA 78
>gi|336470133|gb|EGO58295.1| hypothetical protein NEUTE1DRAFT_117137 [Neurospora tetrasperma
FGSC 2508]
gi|350290173|gb|EGZ71387.1| UV excision repair protein Rad23 [Neurospora tetrasperma FGSC 2509]
Length = 383
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 127/243 (52%), Gaps = 26/243 (10%)
Query: 174 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 233
E + I +M ++R + A+RAA+ NPERAVEYL +GIP +R + A
Sbjct: 149 EQRAEAIANMEAMGFERSQIDAAMRAAFFNPERAVEYLLNGIPANLQQQTASRQPSAAPA 208
Query: 234 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN-------------MGSNAGAGTLDF 280
P A QA PAA N DL Q L N AG G LDF
Sbjct: 209 AAPAAAAQAASPAAAGGDDDDQVNLFDLAAQ-LGNSAGGRGARGAEGAGAEAAGLGNLDF 267
Query: 281 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 340
LRN+ QFQ +R +VQ PQ+L+P+LQ+LG NP L ++I ++ FL N
Sbjct: 268 LRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL------------N 315
Query: 341 VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
+LG+ + VT EER+AIERL +GF + ++ +FAC+K+EELAAN+L D E
Sbjct: 316 LLGEGGEGGSVGIAVTEEERDAIERLTRLGFPQDQAIQAYFACDKDEELAANFLFDQGPE 375
Query: 401 FED 403
+D
Sbjct: 376 EDD 378
>gi|164423937|ref|XP_959055.2| hypothetical protein NCU07542 [Neurospora crassa OR74A]
gi|157070296|gb|EAA29819.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 383
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 127/243 (52%), Gaps = 26/243 (10%)
Query: 174 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 233
E + I +M ++R + A+RAA+ NPERAVEYL +GIP +R + A
Sbjct: 149 EQRAEAIANMEAMGFERSQIDAAMRAAFFNPERAVEYLLNGIPANLQQQTASRQPSAAPA 208
Query: 234 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPN-------------MGSNAGAGTLDF 280
P A QA PAA N DL Q L N AG G LDF
Sbjct: 209 AAPAAAAQAASPAAAGGDDDDQVNLFDLAAQ-LGNSAGGRGARGAEGAGAEAAGLGNLDF 267
Query: 281 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 340
LRN+ QFQ +R +VQ PQ+L+P+LQ+LG NP L ++I ++ FL N
Sbjct: 268 LRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL------------N 315
Query: 341 VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
+LG+ + VT EER+AIERL +GF + ++ +FAC+K+EELAAN+L D E
Sbjct: 316 LLGEGGEGGSVGIAVTEEERDAIERLTRLGFPQDQAIQAYFACDKDEELAANFLFDQGPE 375
Query: 401 FED 403
+D
Sbjct: 376 EDD 378
>gi|26337167|dbj|BAC32268.1| unnamed protein product [Mus musculus]
Length = 296
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 108/352 (30%), Positives = 160/352 (45%), Gaps = 95/352 (26%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D ++E
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP 122
+ E +FVVVM+TK+K PAP A P
Sbjct: 65 HIDEKNFVVVMVTKAKAGQG-------------------------------IPAPPEASP 93
Query: 123 QSVPE-SAP-PPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQ-----------------A 163
+VPE S P PP + P P +P S + + A
Sbjct: 94 TAVPEPSTPFPPVLASGMSHPPPTSREDKSPSEESTTTTSPESISGSVPSSGSSGREEDA 153
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPP 223
AS LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 154 ASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP------- 203
Query: 224 VARASAGGQAGNP-PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 282
G+P P Q+ AP + AG L+FLR
Sbjct: 204 ----------GSPEPEHGSVQESQAPE------------------QPATEAGENPLEFLR 235
Query: 283 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLM------RLIQEHQTDFLR 328
+ QFQ +R ++Q NP +L +LQ+LG++NP L+ R +++ + FLR
Sbjct: 236 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQVRPRVRELRQPPSQFLR 287
>gi|323305178|gb|EGA58925.1| Rad23p [Saccharomyces cerevisiae FostersB]
Length = 401
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 111/392 (28%), Positives = 174/392 (44%), Gaps = 80/392 (20%)
Query: 42 SQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSA 101
SQ LI+ GKVL+D T+ E + + VV M+++ K + +T +
Sbjct: 40 SQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST---------------KTKVTE 84
Query: 102 PPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYG 161
PP + + TT P + A P + APA P ++ ++
Sbjct: 85 PPIAPESATT---------PGRENSTEASPSTDASAAPAATAPEGSQPQEEQTATTERTE 135
Query: 162 QAAS-NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 220
A++ V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 136 SASTPGFVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLR 192
Query: 221 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 280
P + +A A T A+QPA DLF Q G NA +G L
Sbjct: 193 QPEPQQQTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGT 239
Query: 281 LRNS----------------QQFQALRTMVQANPQILQPMLQELGKQNPH---------- 314
+ + +LR +V NP+ L P+L+ + + P
Sbjct: 240 TGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPE 299
Query: 315 -----LMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEERE 361
L+ + ++ D + ++ VEG + V G+ A+A + Q V TPE+ +
Sbjct: 300 VFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQ 359
Query: 362 AIERLEAMGFDRALVLEVFFACNKNEELAANY 393
AI RL +GF+R LV++V+FAC+K + Y
Sbjct: 360 AISRLCELGFERDLVIQVYFACDKKRRSCSKY 391
>gi|367007439|ref|XP_003688449.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
gi|357526758|emb|CCE66015.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
Length = 369
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 116/421 (27%), Positives = 177/421 (42%), Gaps = 90/421 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +++ V KK + + D SQ LI+ GKVL+D ++E
Sbjct: 2 VSILFKDFKKQKISLDLPASSTVLHAKKQLAEQKECD---DSQIKLIYSGKVLQDSNSIE 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + V+ M++K K STV+ T+PT + + AP VA
Sbjct: 59 GCGLKDGDQVIFMISKKK------STVTQV---------------TEPTESKEVAAPEVA 97
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASN---LVAGSNLEATV 177
V ES APA + P ASN V GS V
Sbjct: 98 ASAPVAESTETATEAAPAHSTTEGQQPV--------------TASNDPGFVVGSQRNEAV 143
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 237
+I++MG ++RE V RALRAA+NNP+RAVEYL GIP+
Sbjct: 144 DRIMEMG---YEREEVERALRAAFNNPDRAVEYLLMGIPDHLQQQQQQPQVT-------- 192
Query: 238 AQTQAQQPAAP----APTSGP--NANPLDLFPQGLPNMGSNAGAGTL-------DFLRNS 284
+AQ+P + A T+G + N DLF Q N ++ G
Sbjct: 193 --QEAQEPTSGSTEVAQTAGEQGDINEDDLFAQAAQNNATDGSTGASAAGSQPGSIGLTM 250
Query: 285 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ 344
+ ALR +V NP+ L P+L+ L + P L I + F+ ++ E V G+ N+ G
Sbjct: 251 EDLLALRQIVAGNPEALGPLLENLSTRYPQLREQILSNPEVFVSMLLEAV--GD-NLQGS 307
Query: 345 LASAMPQA--------------------VTVTPEEREAIERLEAMGFDRALVLEVFFACN 384
+ S +++T + +AI RL +GF+R+LV++V+FAC+
Sbjct: 308 MDSEFDNLGLTEGAEGDEGEESELAQPPISLTEADEQAISRLCELGFERSLVVQVYFACD 367
Query: 385 K 385
K
Sbjct: 368 K 368
>gi|323355384|gb|EGA87208.1| Rad23p [Saccharomyces cerevisiae VL3]
Length = 335
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 132/271 (48%), Gaps = 56/271 (20%)
Query: 167 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 226
V G+ T+++I++MG + RE V RALRAA+NNP+RAVEYL GIPE P +
Sbjct: 79 FVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLRQPEPQQ 135
Query: 227 ASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS-- 284
+A A T A+QPA DLF Q G NA +G L +
Sbjct: 136 QTAAAAEQPSTAATTAEQPAED-----------DLFAQAA--QGGNASSGALGTTGGATD 182
Query: 285 --------------QQFQALRTMVQANPQILQPMLQELGKQNPH---------------L 315
+ +LR +V NP+ L P+L+ + + P L
Sbjct: 183 AAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSML 242
Query: 316 MRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQA-------VTVTPEEREAIERLE 367
+ + ++ D + ++ VEG + V G+ A+A + Q V TPE+ +AI RL
Sbjct: 243 LEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLC 302
Query: 368 AMGFDRALVLEVFFACNKNEELAANYLL-DH 397
+GF+R LV++V+FAC+KNEE AAN L DH
Sbjct: 303 ELGFERDLVIQVYFACDKNEEAAANILFSDH 333
>gi|255943815|ref|XP_002562675.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587410|emb|CAP85444.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 380
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 137/421 (32%), Positives = 193/421 (45%), Gaps = 61/421 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F I+V+P + V +VK I +G Y A + +I+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQEKFVIDVEPSETVREVKVKIAQEKGE--YEAERMKVIYSGKILQDDKTVE 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V + +K P A T SS P+ TPA
Sbjct: 59 SYNIQEKDFLVCLPSKQ-------------PKAAASTASSQVPS---------TPAARAP 96
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
AP AA P P+PA A + S +G S L G E V Q+
Sbjct: 97 VSTPAAPPAPHAAAAPPPSVAPATPSPAGAAPAPSSGPAFGDP-SALTMGPAAEGAVVQM 155
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
MG + R + RA+RAA+ NP+RA+EYL +GIP+ + A
Sbjct: 156 EAMG---FARTDIDRAMRAAFYNPDRAIEYLLTGIPDNIQEQQQQQQQAS------ETAP 206
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG----------------TLDFLRNS 284
PAAPA SG + L+LF G +L+FLR++
Sbjct: 207 TGAAPAAPAAPSGGDEPHLNLFEAAAQAGGEGGRPRGAAGAGAGAAGGEALGSLEFLRSN 266
Query: 285 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ 344
FQ LR +VQ P +L+P+LQ++ NP + +I ++ F G L
Sbjct: 267 PHFQQLRQLVQQQPHMLEPILQQVAAGNPQIASIIGQNSDQF--------LQLLGEELED 318
Query: 345 LASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 401
A+P QA++VT EER+AIERL +GF R V++ +FAC+KNEELAAN+L D E
Sbjct: 319 EEGALPPGAQAISVTEEERDAIERLCRLGFPRDSVIQAYFACDKNEELAANFLFDQPDED 378
Query: 402 E 402
E
Sbjct: 379 E 379
>gi|320041049|gb|EFW22982.1| UV excision repair protein [Coccidioides posadasii str. Silveira]
gi|392865203|gb|EAS30978.2| UV excision repair protein Rad23 [Coccidioides immitis RS]
Length = 371
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 136/244 (55%), Gaps = 23/244 (9%)
Query: 165 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT----- 219
S L+ G E VQQ+ MG + R+ + RA+RAA+ NP+RA+EYL SGIP+
Sbjct: 133 SALLMGPQSETAVQQMEAMG---FARDDIQRAMRAAFFNPDRAIEYLLSGIPDHAEQEAA 189
Query: 220 ---AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 276
A +A + P A T++++P + A + G
Sbjct: 190 RQQARATAPSNAAAPASTQPAANTESEEPVNLFEAAAQAAQGGGGARGTRGGATTGEGLN 249
Query: 277 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 336
L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E ++
Sbjct: 250 NLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDIDD 309
Query: 337 GEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 393
+ +P A++VT EER+AIERL +GF R V++ +FAC+KNEELAAN+
Sbjct: 310 D---------AQLPPGAHAISVTEEERDAIERLCRLGFSRDAVIQAYFACDKNEELAANF 360
Query: 394 LLDH 397
L +
Sbjct: 361 LFEQ 364
>gi|303319113|ref|XP_003069556.1| UV excision repair protein rhp23, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240109242|gb|EER27411.1| UV excision repair protein rhp23, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 371
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 136/244 (55%), Gaps = 23/244 (9%)
Query: 165 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT----- 219
S L+ G E VQQ+ MG + R+ + RA+RAA+ NP+RA+EYL SGIP+
Sbjct: 133 SALLMGPQSETAVQQMEAMG---FARDDIQRAMRAAFFNPDRAIEYLLSGIPDHAEQEAA 189
Query: 220 ---AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 276
A +A + P A T++++P + A + G
Sbjct: 190 RQQARATAPSNAAAPASTQPAANTESEEPVNLFEAAAQAAQGGGGARGTRGGATTGEGLN 249
Query: 277 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 336
L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E ++
Sbjct: 250 NLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDIDD 309
Query: 337 GEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 393
+ +P A++VT EER+AIERL +GF R V++ +FAC+KNEELAAN+
Sbjct: 310 D---------AQLPPGAHAISVTEEERDAIERLCRLGFSRDAVIQAYFACDKNEELAANF 360
Query: 394 LLDH 397
L +
Sbjct: 361 LFEQ 364
>gi|401396253|ref|XP_003879788.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
gi|325114195|emb|CBZ49753.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
Length = 370
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 129/241 (53%), Gaps = 25/241 (10%)
Query: 163 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 222
A S L G LE T+ ++ MG + R+ +A+RAA+NNP+RAVEYL +G+P
Sbjct: 151 AESALFTGPQLEETLTHLVAMG---FPRDQAEQAMRAAFNNPDRAVEYLMNGMP------ 201
Query: 223 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 282
P A GG +G +AQ A +A+ + +G+ LR
Sbjct: 202 PEVSALFGGASG------EAQDAEGDAIADEGDADGDEGDEDDGNPLGA---------LR 246
Query: 283 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 342
+ F +R MVQANP +L +LQ +G NP L+ LI ++Q FL ++ GE
Sbjct: 247 HHPAFNQIRQMVQANPAMLPQVLQLIGNSNPQLLELITQNQDAFLEMLQSGQGTGEAGAP 306
Query: 343 GQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 402
G A + +TP+E EA++RLEA+GF R +E + AC++NEE+AANYL +++++
Sbjct: 307 GTGFGA-GGIIQMTPDEMEALQRLEALGFSRHQAVEAYLACDRNEEMAANYLFENLNDLG 365
Query: 403 D 403
D
Sbjct: 366 D 366
>gi|444526365|gb|ELV14316.1| UV excision repair protein RAD23 like protein A [Tupaia chinensis]
Length = 261
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 134/262 (51%), Gaps = 76/262 (29%)
Query: 163 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 222
+A + V GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL
Sbjct: 54 SAPSTVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLL---------- 100
Query: 223 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 282
T++Q PA +G N L+FLR
Sbjct: 101 -----------------TESQVSEQPATEAGDN---------------------PLEFLR 122
Query: 283 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP--------- 333
+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 123 DQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISD 182
Query: 334 --VEGGEGNVLGQLASAMPQAVTVTPEEREAIER----------LEAMGFDRALVLEVFF 381
VE GE +G+ A M + VTP+E+EAIER L+A+GF +LV++ +F
Sbjct: 183 VDVE-GEVGAIGEEAPQM-NYIQVTPQEKEAIERGRGPAGRAPSLKALGFPESLVIQAYF 240
Query: 382 ACNKNEELAANYLLDHMHEFED 403
AC KNE LAAN+LL F+D
Sbjct: 241 ACEKNENLAANFLLS--QNFDD 260
>gi|156837209|ref|XP_001642636.1| hypothetical protein Kpol_370p6 [Vanderwaltozyma polyspora DSM
70294]
gi|156113188|gb|EDO14778.1| hypothetical protein Kpol_370p6 [Vanderwaltozyma polyspora DSM
70294]
Length = 404
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 119/432 (27%), Positives = 185/432 (42%), Gaps = 71/432 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K ++++ V D KK I + + SQ LI+ GKVL++ +T+
Sbjct: 2 VSITFKDFKKEKIPLDLEGSVTVLDAKKQIAVKKDCE---DSQIKLIYSGKVLQNDSTIG 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + + V+ M++K K S+G A P + ++ + Q TVA
Sbjct: 59 DCGLKDGDQVIFMISKKK--STGTKVTEATPVAASTAADASATSVAAVAEPEQ---QTVA 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
Q+ ES AP AP V S V GS V++I
Sbjct: 114 SEQAT-ESNGNEEAPQQEEAPQQGGQQEQVQVQSD---------EGFVVGSQRNEAVERI 163
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
++MG ++R+ V RA+RAA+NNP+RAVEYL GIPE +
Sbjct: 164 MEMG---YERDEVNRAMRAAFNNPDRAVEYLLMGIPEHLQQQEQQQEQQ------QEQHV 214
Query: 241 QAQQPAAPAPTSGP---NANPLDLFPQGLPNMGSNA-----------------GAGTLDF 280
++ + A T+ + +DLF Q G ++ G D
Sbjct: 215 ESTEVATTEETNDNEDVDNGEVDLFTQAAQGNGDSSAAPRGAAGAAGGPPGSIGLTMEDL 274
Query: 281 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 340
L ALR +V NP+ L P+L+ L + P L I + F+ ++ E V
Sbjct: 275 L-------ALRQVVAGNPEALAPLLENLSIRYPQLREQILANPEVFVSMLLEAVGDNLQG 327
Query: 341 VLGQL--------------ASAMPQ---AVTVTPEEREAIERLEAMGFDRALVLEVFFAC 383
V+G+ ASA Q V ++ E+ +AI RL +GF+R LV++V+FAC
Sbjct: 328 VMGEEFEGLAGGELGGNDDASAAGQEQHIVQLSEEDEQAISRLCELGFERNLVIQVYFAC 387
Query: 384 NKNEELAANYLL 395
+KNEE+AAN L
Sbjct: 388 DKNEEIAANILF 399
>gi|71033501|ref|XP_766392.1| DNA repair protein Rad23 [Theileria parva strain Muguga]
gi|68353349|gb|EAN34109.1| DNA repair protein rad23, putative [Theileria parva]
Length = 326
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 117/415 (28%), Positives = 189/415 (45%), Gaps = 101/415 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP---ASQQMLIHQGKVLKDVT 57
M + VKTLK +++V V D+ + ++ +P A LIH GK+LK
Sbjct: 1 MNLKVKTLKNVQVDVDVPDTASVEDLMNKV-----AESFPNMQAESLKLIHAGKILKKEL 55
Query: 58 TLEE-NKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
L++ + + + V+V+ +S+TP
Sbjct: 56 LLKDYSDIKDGDKVIVI-------------------------------------SSKTPD 78
Query: 117 PTVA-PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEA 175
P+ P S P S P + AP P+P P+ + Y +S LV GS LE
Sbjct: 79 PSKHQDPNSQPSSTTTPTSKAPQPSPLDNSPHQPSSGHNVSQQTYETVSSKLVMGSELEQ 138
Query: 176 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 235
++ +I +MG ++R V RA+ AA+NNP+RAVE+L +G + +P + +
Sbjct: 139 SINRICEMG---FERPLVERAMAAAFNNPDRAVEFLSTGNIPVSNMPNIDHQNVTA---- 191
Query: 236 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 295
P G + G L +++ F+ L VQ
Sbjct: 192 -------------------------------PEHGHSGGEDVLQMIQSHPMFEQLSQAVQ 220
Query: 296 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN-------EPVEGGEGNVLGQLASA 348
++PQ+LQ +L+ LG+ +P L++ I + Q +F+ L+N +P E N
Sbjct: 221 SDPQLLQQLLESLGQTHPELLQTIIQRQDEFMELLNSGAGAEADPYSNTEHN-------- 272
Query: 349 MPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
P +++TP E E+IERLE +GF R V+E + AC+KNEELAANYLL++ H+F++
Sbjct: 273 -PNIISLTPVEMESIERLEGLGFSRPAVIEAYLACDKNEELAANYLLENSHDFQE 326
>gi|119182327|ref|XP_001242306.1| hypothetical protein CIMG_06202 [Coccidioides immitis RS]
Length = 418
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 136/244 (55%), Gaps = 23/244 (9%)
Query: 165 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT----- 219
S L+ G E VQQ+ MG + R+ + RA+RAA+ NP+RA+EYL SGIP+
Sbjct: 180 SALLMGPQSETAVQQMEAMG---FARDDIQRAMRAAFFNPDRAIEYLLSGIPDHAEQEAA 236
Query: 220 ---AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAG 276
A +A + P A T++++P + A + G
Sbjct: 237 RQQARATAPSNAAAPASTQPAANTESEEPVNLFEAAAQAAQGGGGARGTRGGATTGEGLN 296
Query: 277 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 336
L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E ++
Sbjct: 297 NLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDIDD 356
Query: 337 GEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 393
+ +P A++VT EER+AIERL +GF R V++ +FAC+KNEELAAN+
Sbjct: 357 D---------AQLPPGAHAISVTEEERDAIERLCRLGFSRDAVIQAYFACDKNEELAANF 407
Query: 394 LLDH 397
L +
Sbjct: 408 LFEQ 411
>gi|6688552|emb|CAB65692.1| Rad23 Protein [Solanum lycopersicum var. cerasiforme]
Length = 65
Score = 121 bits (303), Expect = 6e-25, Method: Composition-based stats.
Identities = 58/65 (89%), Positives = 63/65 (96%)
Query: 339 GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 398
GNVLGQ A A+PQAVTVTPEEREAIERLEAMGFDRALVLEV+FACNKNEELAANYLLDH+
Sbjct: 1 GNVLGQTAGAIPQAVTVTPEEREAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHL 60
Query: 399 HEFED 403
HEF++
Sbjct: 61 HEFDE 65
>gi|218190702|gb|EEC73129.1| hypothetical protein OsI_07141 [Oryza sativa Indica Group]
Length = 242
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/101 (65%), Positives = 76/101 (75%), Gaps = 12/101 (11%)
Query: 153 SSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 212
S + +D+YGQAASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY
Sbjct: 154 SYTEADIYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLY 213
Query: 213 SGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 253
+G+PEQ A ASA QA + PA QA PTSG
Sbjct: 214 TGLPEQ------AEASAVVQALSVPAAVQA------FPTSG 242
>gi|340522496|gb|EGR52729.1| hypothetical protein TRIREDRAFT_102581 [Trichoderma reesei QM6a]
Length = 341
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 132/415 (31%), Positives = 183/415 (44%), Gaps = 101/415 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV + LK F ++V+P DK+ LKD T++
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTDKI-----------------------------LKDDDTVQ 31
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K K + + A+ + PA A +++ P + S T A
Sbjct: 32 SYNIEEKGFVVCMVNKPKPAPAAAAAAAPPPATPAPPAAASTPAAPPAPAQSATQAAAPP 91
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ S P+ A A A A N+EA
Sbjct: 92 ATPTPNRSTGTPSGLAMGSERAEAIA-------------------------NMEA----- 121
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT------------AVPPVARAS 228
MG ++R + A+RAA+NNP+RAVEYL +GIPE P A A
Sbjct: 122 --MG---FERTQIEAAMRAAFNNPDRAVEYLLTGIPESIQQEQQQQRANPPQAAPAAAAP 176
Query: 229 AGGQAGNPPA-QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQF 287
G G+ AQ+ APA P A QG G LDFLR++ QF
Sbjct: 177 TGDDDGSVNLFDLAAQRRGAPASGGSPAAATAAAAAQG--------DLGNLDFLRHNAQF 228
Query: 288 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLAS 347
Q LR +VQ PQ+L+P+LQ+LG NP L +LI + FL+L+ E +
Sbjct: 229 QQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIASNPDQFLQLLGEDAD-----------D 277
Query: 348 AMP-----QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
+P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 278 DVPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQ 332
>gi|443919043|gb|ELU39338.1| UBA domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 886
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 129/266 (48%), Gaps = 35/266 (13%)
Query: 165 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 224
S+ VAG L + ++ ++ MG ++RE ++RALRA++NNP+RAVEYL +GIPE
Sbjct: 164 SSFVAGGALNSAIENMMGMG---FEREQIMRALRASFNNPDRAVEYLLTGIPEHLLAETA 220
Query: 225 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNAN-----------PLDLFPQGLPNMGSN- 272
AS G A + P PA + PL+LF Q G N
Sbjct: 221 PPASGGPAATPAASNPAPAAPTTPAAAPAARSTTTSGTGGGASGPLNLFAQAAAQSGGNP 280
Query: 273 -----------------AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHL 315
L+ L+NS FQ ++ NP +LQP++Q+L + NP +
Sbjct: 281 STGAGADAGEGAGGGAGINPAALESLQNSPMFQNTLGAIRENPALLQPLIQQLAQSNPAI 340
Query: 316 MRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFD 372
+ + + +++ + + +P + +T EE EAI RLEA+GF
Sbjct: 341 AQQLTSNPELLYQILGGLGGDDQDDDGDGEGGGIPPGAHVINITQEEAEAIARLEALGFP 400
Query: 373 RALVLEVFFACNKNEELAANYLLDHM 398
R L +E +F C+KNEELAANYL +++
Sbjct: 401 RQLAIEAYFTCDKNEELAANYLFENV 426
>gi|255712183|ref|XP_002552374.1| KLTH0C03410p [Lachancea thermotolerans]
gi|238933753|emb|CAR21936.1| KLTH0C03410p [Lachancea thermotolerans CBS 6340]
Length = 391
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 129/258 (50%), Gaps = 35/258 (13%)
Query: 167 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ----TAVP 222
V GS + TVQ+I++MG +DRE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 135 FVTGSRRDETVQRIMEMG---YDREQVERALRAAFNNPDRAVEYLLMGIPEHLQQTQQPQ 191
Query: 223 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA------G 276
+ Q P ++ + P A+ DLF Q + G G G
Sbjct: 192 QQQQQQQQQQQQPEPQAQESHETQQPQEHEEQQASSDDLFAQAAASAGGEEGGDSARAPG 251
Query: 277 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 336
T+ + +LR +V NP+ L P+L+ L + P L I + F+ ++ E V G
Sbjct: 252 TIGL--TMEDLLSLRQVVTGNPEALPPLLESLSTRYPELREQIMTNPEMFISMLLEAVGG 309
Query: 337 G--EGNVLG-----------------QLASAMPQAVTVTPEEREAIERLEAMGFDRALVL 377
EG + G + A PQ + ++P+++EAI RL +GF+R LV+
Sbjct: 310 SLPEGIMEGDAGMEAGAEGALAGADVEGAEQAPQ-LEISPQDQEAISRLCELGFERTLVV 368
Query: 378 EVFFACNKNEELAANYLL 395
+V+FAC+KNEE+AAN L
Sbjct: 369 QVYFACDKNEEIAANMLF 386
>gi|254583708|ref|XP_002497422.1| ZYRO0F05192p [Zygosaccharomyces rouxii]
gi|238940315|emb|CAR28489.1| ZYRO0F05192p [Zygosaccharomyces rouxii]
Length = 384
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 120/426 (28%), Positives = 183/426 (42%), Gaps = 75/426 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +E+ P V D K + T + + SQ LI+ GKVL+D L+
Sbjct: 2 INIIFKDFKKEKISLELDPSSSVKDAKVRLATEKSCE---ESQIKLIYSGKVLQDAKNLQ 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E+ + + V+ M++K K ++ A+ + A A+ + + SA TT ++T A A
Sbjct: 59 ESGLKDGDQVIFMISKKKAATPSAAAATPASASVTEPSQSA-------TTNTETQAAGSA 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ A P AP P + V G TV +I
Sbjct: 112 AETTATAPAQPSTTQAPVSTP------------------------DFVVGQQRNETVDRI 147
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
++MG ++R+ V RALRAA+NNP+RAVEYL GIPE AG + P Q
Sbjct: 148 MEMG---YERDQVERALRAAFNNPDRAVEYLLMGIPENLQ-------RAGARQQQPEQQA 197
Query: 241 QAQQPAAPAPTSGPNANPL---DLFPQGLPNMGSNAGA---------------GTLDFLR 282
Q + P DLF Q N + G++
Sbjct: 198 QQESQPQQESQPQQATEPQEGEDLFAQAEQRTQGNTASAEGAAAADGAQGGVPGSIGL-- 255
Query: 283 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV-------- 334
+ ALR +V NP+ L P+L+ L + P L I + F+ ++ E V
Sbjct: 256 TMEDLLALRQVVSGNPEALAPLLESLSSRYPQLREQIMSNPEVFVSMLLEAVGDNLQDAM 315
Query: 335 ---EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 391
E G+ A+ V +T + +AI RL +GF+RA+ ++V+FAC KNEE+AA
Sbjct: 316 TDLETGDDPEGAAAAAEGAFQVELTESDEQAITRLCELGFERAVAIQVYFACGKNEEIAA 375
Query: 392 NYLLDH 397
N LL+
Sbjct: 376 NMLLND 381
>gi|45198876|ref|NP_985905.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|44984905|gb|AAS53729.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|374109136|gb|AEY98042.1| FAFR358Wp [Ashbya gossypii FDAG1]
Length = 413
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 119/448 (26%), Positives = 189/448 (42%), Gaps = 95/448 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +++ P +++ K+ + + D SQ +I GKVL+D TLE
Sbjct: 3 ITIHFKDFKKERLPLQLSPSATIAEAKQMLARAKQCD---ESQLKMIFSGKVLQDGNTLE 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ + V+ M++K K A+T S P +++P+ Q+ A T
Sbjct: 60 GCKLKDGDQVIFMISKKK----------------AETRVSEPEPASEPSGGPQSEAST-- 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P + A P A V S S V G A S TV++I
Sbjct: 102 ---------GLETVTTPGVSAAVDPESTGAAVGSGASFVTGSARSQ---------TVERI 143
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVPPVARASAG-GQAGNPP 237
++MG +DR V ALRAA+NNP+RAVEYL +GIPE Q + AR SA +G P
Sbjct: 144 MEMG---YDRAQVEMALRAAFNNPDRAVEYLLTGIPEHLQNSSAFSARQSASVAASGVPE 200
Query: 238 AQTQAQQPAA---------PAPTSGPNANPLDLFPQGLPNMGSN-----AGAGTLDFLRN 283
AQ + + + + DLF Q N T ++
Sbjct: 201 TGATAQTGTETETGTGTGTASEVNDEHVHEDDLFAQAAAVGSENPTTGADATTTGTVSQD 260
Query: 284 SQQFQA----------LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 333
S Q LR ++ +P+ L P+L+ L ++ P L I + F+ ++ +
Sbjct: 261 SSPLQTIGLTFEDLVQLRGVINGDPEALPPLLESLSERYPELREQIMSNPEMFISMLLQA 320
Query: 334 VEG----------------------GEGNVLG----QLASAMPQAVTVTPEEREAIERLE 367
V G G+G+ A A + ++++ E+ IERL
Sbjct: 321 VGGALPSEALDDASAYQADSEAIAEGDGSTASANQDTAADAQNELLSLSEEDLTTIERLC 380
Query: 368 AMGFDRALVLEVFFACNKNEELAANYLL 395
+GF+R LV++++ AC+KNEE+ AN L
Sbjct: 381 ELGFERDLVIQIYVACDKNEEVTANMLF 408
>gi|195108433|ref|XP_001998797.1| GI24165 [Drosophila mojavensis]
gi|193915391|gb|EDW14258.1| GI24165 [Drosophila mojavensis]
Length = 299
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 108/401 (26%), Positives = 168/401 (41%), Gaps = 106/401 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDV-YPASQQMLIHQGKVLKDVTTL 59
MK+ ++TL +E+K +DK + + V+ ++ P LI+ G++++D +
Sbjct: 1 MKLTIRTLDQKTISLELK-DDKQNVLHLKQRLVELPEISQPVDSLQLIYSGRIMQDDRPI 59
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E + E+ F+V+M KS + PP T Q
Sbjct: 60 SEYNIMEDRFIVLMTKKS-------------------VNAVEPPKKN--TEAEQK----- 93
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
ES P + PA P P+ AP V D
Sbjct: 94 -------ESQQPKSGNTEQLRPAEPPRPSVAPDEQRVRD--------------------- 125
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
++ MG +D V ALRA++N+PERA+EYL +GIP T VP V + Q
Sbjct: 126 LVLMG---YDEPDVRAALRASFNHPERAIEYLITGIP--THVPAVNQT-----------Q 169
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 299
TQ AA A G A L++L F +R +++ NP+
Sbjct: 170 TQTNANAADANLIG-------------------ETAERLNYLATDPHFAHVRDLIRQNPE 210
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 359
+L+ +L L + +P I+ +Q +F+ ++N P MP ++ EE
Sbjct: 211 LLELVLTHLRESDPAAFEAIRNNQEEFISMLNAP---------------MPMTASLNTEE 255
Query: 360 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
A+ERL A+GFDR +V+ V+ AC+KNEELAA+ L E
Sbjct: 256 EAAVERLMALGFDRDVVVPVYLACDKNEELAADILFRQTDE 296
>gi|330803429|ref|XP_003289709.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
gi|325080219|gb|EGC33784.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
Length = 349
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 125/413 (30%), Positives = 184/413 (44%), Gaps = 84/413 (20%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K + + E+ + V D+K +I + + P S Q LI+ GK+L+D TLE
Sbjct: 1 MKLTIKNINKEVYSFELDSDKTVLDLKNSI--FEKYNQIP-SWQTLIYSGKILEDKNTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K++E F+V+M+ K + APA T+ S +S +TT+ PA T +
Sbjct: 58 SYKISEQGFIVMMIKKPR----------EAPATATTTSPSESTSSPSNSTTTSQPANTTS 107
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P + P P + ++S S ++++ V G+ LE T++ I
Sbjct: 108 APVTTPNPTPARPTTPNPTPTTSSTPGTTPSSNTSPSQ--NTSSTDFVTGTELENTIKNI 165
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVP------PVARASAGGQA 233
+DMG + RE VIRALR YNN +RAVE L SG IPE A V Q
Sbjct: 166 VDMG---FQREQVIRALRLGYNNADRAVELLLSGSIPENAADDEEEDNMDVGGGGNDQQG 222
Query: 234 GNPPAQTQAQQPAAP----APTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 289
G+ P + P P A PN P TL
Sbjct: 223 GDNPFEALRNHPYFPMLRQAIAQDPNIIP------------------TL----------- 253
Query: 290 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL----GQL 345
L+ + Q+NP+ L+R I E DF+R+ G G V GQ
Sbjct: 254 LQQLAQSNPE---------------LVRQISERPNDFIRIFQGEEGGNGGGVGGSQPGQF 298
Query: 346 ASAMPQAVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDH 397
+ VT EE +AIERL+ + G ++ +V+E +FAC+KNEELAA+YL +
Sbjct: 299 ------TIQVTREENDAIERLQQLTGLEKQVVIEAYFACDKNEELAASYLFER 345
>gi|367011717|ref|XP_003680359.1| hypothetical protein TDEL_0C02590 [Torulaspora delbrueckii]
gi|359748018|emb|CCE91148.1| hypothetical protein TDEL_0C02590 [Torulaspora delbrueckii]
Length = 368
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 114/386 (29%), Positives = 164/386 (42%), Gaps = 89/386 (23%)
Query: 46 LIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS 105
LI+ GKVL+D +L+E+ + + V+ M++
Sbjct: 44 LIYSGKVLQDSKSLQESGLKDGDQVIFMIS------------------------------ 73
Query: 106 TQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAAS 165
++ TV PQS SAP +PAP + PA +SS +D
Sbjct: 74 -----KKKSTTTTVTEPQSKETSAPVSQSPAP---QSETPAAETQQEASSTTD------P 119
Query: 166 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 225
V G+ V++I++MG ++RE V RALRAA+NNP+RAVEYL GIPE
Sbjct: 120 GFVVGAQRNEAVERIMEMG---YEREQVDRALRAAFNNPDRAVEYLLMGIPENLQQQQQP 176
Query: 226 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQG----------------LPNM 269
+ A Q + + P +G A DLF Q
Sbjct: 177 QQQAEQPQEQEEEQQETESNTEP---TGEAAGE-DLFAQAAQRGGAPGGETGGEGTTGGP 232
Query: 270 GSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 329
+ G D L ALR +V NP+ L P+L+ L + P L I + F+ +
Sbjct: 233 PGSIGLTMEDLL-------ALRQVVSGNPEALAPLLESLSNRFPQLREQIVANPEVFVSM 285
Query: 330 INEPV------------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVL 377
+ E V EG EG + V V+ + +AI RL +GF+RALV+
Sbjct: 286 LLEAVGENLEDAMTGMDEGTEGGAVAAGQQGEEVNVEVSESDEQAIARLCELGFERALVM 345
Query: 378 EVFFACNKNEELAANYLLDHMHEFED 403
+V+FAC KNEE+AAN L +EF D
Sbjct: 346 QVYFACGKNEEIAANMLF---NEFGD 368
>gi|301118881|ref|XP_002907168.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
gi|262105680|gb|EEY63732.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
Length = 449
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 99/169 (58%), Gaps = 38/169 (22%)
Query: 166 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA 225
N+V+ + ATVQQ++DMG + + V ALRAA+NNPERAVEYL +GIPEQ A P
Sbjct: 145 NVVSDEQMSATVQQLVDMG---FPEDQVRSALRAAFNNPERAVEYLMTGIPEQAAAP--- 198
Query: 226 RASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQ 285
AQT P+SG +A GS+ A +L+ LRN
Sbjct: 199 ------------AQT-------AVPSSGASA-------------GSDDVANSLEALRNHP 226
Query: 286 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 334
QF ALR +VQ+NP L +LQ++G Q+P L+RLI ++Q F++++NEP+
Sbjct: 227 QFDALRQLVQSNPAALPAVLQQIGAQSPELLRLIHQNQDRFVQMLNEPI 275
>gi|66808013|ref|XP_637729.1| repC-binding protein A [Dictyostelium discoideum AX4]
gi|74853451|sp|Q54LV1.1|RAD23_DICDI RecName: Full=UV excision repair protein RAD23 homolog; AltName:
Full=repC-binding protein A
gi|60466140|gb|EAL64203.1| repC-binding protein A [Dictyostelium discoideum AX4]
Length = 342
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 114/236 (48%), Gaps = 51/236 (21%)
Query: 162 QAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV 221
Q +S+ G+ LEAT++ I DMG + R+ V+RALR +NN ERA+EYL SG
Sbjct: 152 QQSSDFATGTELEATIKNITDMG---FARDQVLRALRLTFNNAERAIEYLVSG------- 201
Query: 222 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 281
N PA + G NP + L
Sbjct: 202 -------------NIPAANDPEDEEEMEGGGGSGDNPFEA-------------------L 229
Query: 282 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV 341
RN F LR + NP I+ +LQ+L + NP L+R IQE+ +F+RL G
Sbjct: 230 RNHPHFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENPNEFIRLFQGDGNPG---- 285
Query: 342 LGQLASAMPQAVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLD 396
+ + VT EE EAI+RL+A+ G D++ V+E +FAC+KNEEL A+YL +
Sbjct: 286 ----GNPGQFTLQVTQEESEAIQRLQALTGMDKSTVIEAYFACDKNEELTASYLFE 337
>gi|217071960|gb|ACJ84340.1| unknown [Medicago truncatula]
Length = 110
Score = 117 bits (292), Expect = 1e-23, Method: Composition-based stats.
Identities = 57/90 (63%), Positives = 69/90 (76%), Gaps = 1/90 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VKKNIE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 ENKVAENSFVVVMLTKSKV-SSSGASTVSA 89
+NKV+E+ F+VVML+KSKV S+G S+ A
Sbjct: 61 DNKVSEDGFLVVMLSKSKVLGSAGTSSTQA 90
>gi|258571718|ref|XP_002544662.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
gi|237904932|gb|EEP79333.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
Length = 371
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 134/433 (30%), Positives = 190/433 (43%), Gaps = 135/433 (31%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---------- 50
MK+ + LK F I+ +P + + +K+ I +G D A+QQ LI+ G
Sbjct: 1 MKLSFRDLKQQKFTIDAEPSETIGQLKEKIAQEKGWD---AAQQKLIYSGELHFERHLRL 57
Query: 51 ---------------KVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQA 95
K+L++ T+E + E FVV M++K K
Sbjct: 58 ARDLNLLSDVRPSTGKILQNANTIESYNIEEKGFVVCMVSKPK----------------- 100
Query: 96 QTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSS 155
T AP T P+ PPA PAPA PA APAP ++
Sbjct: 101 --TQPAPSTPAGPSQ--------------------PPATPAPAQTSTPAAPSAPAPATND 138
Query: 156 VSDVY-------GQAA-----SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNN 203
S G AA S L+ GS EA VQ++ MG + R + RA+RAA+ +
Sbjct: 139 PSAPPATPSPAGGDAAAFNNPSTLLMGSQSEAAVQEMEAMG---FPRADIDRAMRAAFFH 195
Query: 204 PERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPA-------PTSGPNA 256
P+RA+EYL +GIP+ T P AR +QP+APA P++ P A
Sbjct: 196 PDRAIEYLLNGIPD-TPEQPAAR----------------EQPSAPAQSNVPVPPSNQPAA 238
Query: 257 N-----PLDLFPQGLPNMGSNAGAGT------------------LDFLRNSQQFQALRTM 293
N P++LF GT LDFLRN+ FQ LR +
Sbjct: 239 NAEPDEPINLFEAAAQAAQGGGARGTRTAGASLGGAAGGEGLSNLDFLRNNPHFQQLRQL 298
Query: 294 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAV 353
VQ P +L+P+LQ+LG NP L +LI ++Q FL+L++E +E QL +
Sbjct: 299 VQQQPGMLEPILQQLGAGNPQLAQLIGQNQEQFLQLLSEDIEDD-----TQLPPGT-HTI 352
Query: 354 TVTPEEREAIERL 366
+VT EER+AIER+
Sbjct: 353 SVTEEERDAIERV 365
>gi|389609121|dbj|BAM18172.1| UV excision repair protein rad23 [Papilio xuthus]
Length = 254
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 87/136 (63%), Gaps = 15/136 (11%)
Query: 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV--- 334
L FLR+ QFQ +R ++Q NP +L +LQ++G+ NP L++ I +HQ F+R++NEPV
Sbjct: 124 LAFLRDQPQFQQMRAVIQQNPSLLNTVLQQIGQTNPALLQAISQHQQAFVRMLNEPVNPP 183
Query: 335 -------EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNE 387
+ G N + Q P V V+P++REAIERL+A+GF +V++ +FAC KNE
Sbjct: 184 APGAAVEDSGAENPMPQ---PPPSVVQVSPQDREAIERLKALGFPEHMVIQAYFACEKNE 240
Query: 388 ELAANYLLDHMHEFED 403
LAAN+LL F+D
Sbjct: 241 NLAANFLLS--QNFDD 254
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%), Gaps = 3/45 (6%)
Query: 172 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 216
+ E+TVQ I+DMG ++R+ V +ALRA+++N ERAVEYL +GIP
Sbjct: 65 DFESTVQSIMDMG---YNRQQVEQALRASFSNRERAVEYLITGIP 106
>gi|345327424|ref|XP_003431168.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ornithorhynchus anatinus]
Length = 182
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 86/130 (66%), Gaps = 8/130 (6%)
Query: 274 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 333
G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEP
Sbjct: 46 GGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEP 105
Query: 334 VE--------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNK 385
V+ G + + S + VTP+E+EAIERL+A+GF LV++ +FAC K
Sbjct: 106 VQESGGQGGGGSGSGGVAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEK 165
Query: 386 NEELAANYLL 395
NE LAAN+LL
Sbjct: 166 NENLAANFLL 175
>gi|76156833|gb|AAX27952.2| SJCHGC06167 protein [Schistosoma japonicum]
Length = 231
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 118/215 (54%), Gaps = 29/215 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTLK F ++++ +D V DVKK IE +GS+ + AS Q LIH GKV++D +L+
Sbjct: 1 MKVTFKTLKQQTFVLDLQEDDLVGDVKKKIEAERGSE-FDASTQKLIHSGKVMEDSKSLK 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ KV ++ FVVVM + SK + G+++ PA + +PTT + P V
Sbjct: 60 DYKVTDSGFVVVM-SVSKPAKEGSASAPGNPAGEG-----------RPTTDKKIPDVDVT 107
Query: 121 -PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
P S P++ P+ P S+ ++ G S+LV G N E VQ+
Sbjct: 108 ESPSSKPDANSQPSLPTVTTT------------QSTTTNTLGFGESSLVTGENFERVVQE 155
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 214
++ MG +++ VIRA+RA +NNP+RA EYL SG
Sbjct: 156 LVSMG---FEKPLVIRAMRAGFNNPDRAFEYLSSG 187
>gi|297721185|ref|NP_001172955.1| Os02g0465112 [Oryza sativa Japonica Group]
gi|255670888|dbj|BAH91684.1| Os02g0465112, partial [Oryza sativa Japonica Group]
Length = 92
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/101 (63%), Positives = 75/101 (74%), Gaps = 12/101 (11%)
Query: 153 SSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 212
+S+ +D+YG AASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY
Sbjct: 4 TSTEADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLY 63
Query: 213 SGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 253
+G+P Q A ASA QA + PA QA PTSG
Sbjct: 64 TGLPGQ------AEASAVVQALSVPAAVQA------FPTSG 92
>gi|366995773|ref|XP_003677650.1| hypothetical protein NCAS_0G04120 [Naumovozyma castellii CBS 4309]
gi|342303519|emb|CCC71299.1| hypothetical protein NCAS_0G04120 [Naumovozyma castellii CBS 4309]
Length = 392
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 124/423 (29%), Positives = 194/423 (45%), Gaps = 65/423 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K + ++ + V D K + + + SQ LI+ GKVL+D TLE
Sbjct: 2 INITFKDFKKEKIPLALESTNTVLDAKTQLAQNKSCE---ESQIKLIYSGKVLQDAKTLE 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + + V+ M++K K +++ + ++ A TT++ T+T +
Sbjct: 59 DCGLKDGDQVIFMISKKKSTTTKVTEAPSSTTATAPTTTTNSATNTPAEVS--------- 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PAA + PA PA A +SS + ++ V GS + TV++I
Sbjct: 110 -----------PAAASETPAQLPATTEAAPATTSS-GETSSAGSAGFVVGSQRDQTVERI 157
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
++MG ++RE V ALRAA+NNP+RAVEYL GIPE ARA+A Q P+ T
Sbjct: 158 MEMG---YEREQVESALRAAFNNPDRAVEYLLMGIPENLQ----ARAAAP-QETAAPSIT 209
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNS----------QQFQAL 290
Q + P DLF Q GSN G T + Q +L
Sbjct: 210 QDVTTTTASTEDAPAEE--DLFAQAA--QGSNTGPNTEGESEHHGPPGSIGLTVQDLLSL 265
Query: 291 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV---------------- 334
R ++ NP+ L +L+ L + P+L + + F+ ++ E V
Sbjct: 266 RQVISGNPEALTSLLESLSVRYPNLREQMMNNPQAFISMLLEAVGDNLQGLEGLEGLGEE 325
Query: 335 --EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 392
G+ A +P V +TPE+ +AI RL +GF+R+LV++V+FAC KNEE+AAN
Sbjct: 326 GHIEEGELEEGEEAHPIPH-VELTPEDEQAISRLCELGFERSLVIQVYFACEKNEEVAAN 384
Query: 393 YLL 395
L
Sbjct: 385 MLF 387
>gi|47496878|dbj|BAD19842.1| RAD23 protein-like [Oryza sativa Japonica Group]
Length = 110
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 72/97 (74%), Gaps = 12/97 (12%)
Query: 157 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 216
+D+YG AASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY+G+P
Sbjct: 26 ADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 85
Query: 217 EQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 253
Q A ASA QA + PA QA PTSG
Sbjct: 86 GQ------AEASAVVQALSVPAAVQA------FPTSG 110
>gi|345327426|ref|XP_001507990.2| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ornithorhynchus anatinus]
Length = 292
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 108/207 (52%), Gaps = 21/207 (10%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IET +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +++
Sbjct: 42 VKALKEKIETEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKATAT 101
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
+ + TTS+ + T + TP+P +AP P P P PA
Sbjct: 102 PMPSPVVGQQSNPATTSTVSSSKASAVTPAPTPSPVLAPVTPTPAGEPAPTVAPKEEKPA 161
Query: 143 PAPAPAPAPVSSSVSD------------------VYGQAASNLVAGSNLEATVQQILDMG 184
P AP +S S SD ++ A S LV G + E V +I+ MG
Sbjct: 162 EKPVEAPVALSPSSSDSLTGDASGDASGDASRSNLFEDATSALVTGQSYENMVTEIMSMG 221
Query: 185 GGSWDRETVIRALRAAYNNPERAVEYL 211
++RE VI ALRA++NNP+RAVEYL
Sbjct: 222 ---YEREQVIAALRASFNNPDRAVEYL 245
>gi|432871920|ref|XP_004072043.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Oryzias
latipes]
Length = 421
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 131/227 (57%), Gaps = 17/227 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +IE+ PE V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+ E +FVVVM++K+K +++ ++ AP AQ + S TST ++ APT A
Sbjct: 61 DYKIDEKNFVVVMVSKAKPAATTSAPAPEAPKPPAQDSGS---TSTAAPPSNPPAAPTPA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PE A + A A P P SSS + A+S LV G+ EA + +I
Sbjct: 118 AVPIPPEEAKQEQS-AEATEPQ-------QPASSSGGNQGLDASSALVTGAEYEAMLTEI 169
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE---QTAVPPV 224
+ MG ++RE V+ ALRA++NNP RAVEYL +GIP Q + PPV
Sbjct: 170 MSMG---YERERVVAALRASFNNPHRAVEYLLTGIPSSPVQESNPPV 213
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 272 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRL 318
++G L FLR QF +R +Q NP +L +LQ+LG++NP L+++
Sbjct: 351 SSGENPLAFLRTQPQFLHMRQAIQQNPALLPTLLQQLGRENPQLLQV 397
>gi|68466693|ref|XP_722542.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
gi|68466980|ref|XP_722405.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444377|gb|EAL03652.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444523|gb|EAL03797.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
Length = 348
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 128/280 (45%), Gaps = 50/280 (17%)
Query: 163 AASN---LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 219
AASN GS EA++Q I++MG ++R V ALRAA+NNP RAVEYL +GIPE
Sbjct: 75 AASNESTFAVGSEREASIQNIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESL 131
Query: 220 AVP-----PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 274
P P A +A Q QQ + +LF
Sbjct: 132 QHPVAPAQPPATGTAPAQQTEGNTSESGQQGEDEEHEGDESTQHENLFEAAAAAAAGAGA 191
Query: 275 A--------------GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 320
G + L + QQ Q LR +Q+NP+++QP+L++L NP + LIQ
Sbjct: 192 GGAGSGAGAGAGSAEGDIGGLGDDQQMQLLRAALQSNPELIQPLLEQLAASNPQIANLIQ 251
Query: 321 EHQTDFLRLINEPVEG--GEGNVLG-----------------QLASAMPQA---VTVTPE 358
+ F+R+ + G G GN LG Q + ++ +
Sbjct: 252 QDPEAFIRMF---LSGAPGSGNDLGFEFEDESGETGAGGAAAAATGEDEQGTIRIQLSEQ 308
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 398
+ AI RL +GF+R +V++V+ AC+KNEE+AA+ L M
Sbjct: 309 DNNAINRLCELGFERDIVIQVYLACDKNEEVAADILFRDM 348
>gi|238881986|gb|EEQ45624.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 348
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 128/280 (45%), Gaps = 50/280 (17%)
Query: 163 AASN---LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 219
AASN GS EA++Q I++MG ++R V ALRAA+NNP RAVEYL +GIPE
Sbjct: 75 AASNESTFAVGSEREASIQNIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESL 131
Query: 220 AVP-----PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAG 274
P P A +A Q QQ + +LF
Sbjct: 132 QHPVAPAQPPATGTAPAQQTEGNTSESGQQGEDEEHEGDESTQHENLFEAAAAAAAGAGA 191
Query: 275 A--------------GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQ 320
G + L + QQ Q LR +Q+NP+++QP+L++L NP + LIQ
Sbjct: 192 GGAGSGAGAGAGSAEGDIGGLGDDQQMQLLRAALQSNPELIQPLLEQLAASNPQIANLIQ 251
Query: 321 EHQTDFLRLINEPVEG--GEGNVLG-----------------QLASAMPQA---VTVTPE 358
+ F+R+ + G G GN LG Q + ++ +
Sbjct: 252 QDPEAFIRMF---LSGAPGSGNDLGFEFEDESGETGAGGAAAAATGEDEQGTIRIQLSEQ 308
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 398
+ AI RL +GF+R +V++V+ AC+KNEE+AA+ L M
Sbjct: 309 DNNAINRLCELGFERDIVIQVYLACDKNEEVAADILFRDM 348
>gi|222622818|gb|EEE56950.1| hypothetical protein OsJ_06656 [Oryza sativa Japonica Group]
Length = 242
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/101 (63%), Positives = 74/101 (73%), Gaps = 12/101 (11%)
Query: 153 SSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 212
S + +D+YG AASNLVAGSNLE TVQ IL+MGGG+WDR+TV+RAL AAYNNPERAVEYLY
Sbjct: 154 SYTEADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLY 213
Query: 213 SGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSG 253
+G+P Q A ASA QA + PA QA PTSG
Sbjct: 214 TGLPGQ------AEASAVVQALSVPAAVQA------FPTSG 242
>gi|211909006|gb|ACJ12793.1| RAD23-like protein B [Sebastiscus marmoratus]
Length = 277
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 114/198 (57%), Gaps = 25/198 (12%)
Query: 138 APAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRAL 197
+P PA + +S+ +++ +A SNLV G++ +A V +++ MG ++RE V+ AL
Sbjct: 60 SPTAEPASTSVGSSEASTNTNLIDEAVSNLVTGASYDAMVNEMMLMG---YEREQVVAAL 116
Query: 198 RAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNAN 257
RA++NNP+RAVEYL +GIP G+ P A A P P SG ++
Sbjct: 117 RASFNNPDRAVEYLLTGIP--------------GRDPGPAAGLDAVVP----PVSGVHSA 158
Query: 258 PLDLFPQGLP-NMGSN-AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHL 315
P+ LP N GS+ +G L FLR+ QF +R ++Q N +L +LQE+G++NP L
Sbjct: 159 PIGGI--SLPANTGSSPSGGNPLSFLRSQPQFHVMRQLIQQNAALLPALLQEIGRENPEL 216
Query: 316 MRLIQEHQTDFLRLINEP 333
++ I HQ F++++NEP
Sbjct: 217 LQEISSHQEQFIQMLNEP 234
>gi|255724082|ref|XP_002546970.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134861|gb|EER34415.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 335
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 124/261 (47%), Gaps = 33/261 (12%)
Query: 165 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI------PEQ 218
S G+ EAT+Q I++MG ++R V ALRAA+NNP RAVEYL +GI PEQ
Sbjct: 81 STFAVGTEREATIQNIMEMG---YERSQVEAALRAAFNNPHRAVEYLLTGIPESLQRPEQ 137
Query: 219 TAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTL 278
P A + G + + G + N LF + G
Sbjct: 138 PVAPVAPVAQSEAPVGESTTTSAHDEEDDDEHEGGQHEN---LFEAAAAAAAAQEGGAHA 194
Query: 279 DFLR------------NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDF 326
+ QQ Q LR +Q+NP+++QP+L++L NP + LIQ+ F
Sbjct: 195 ATAGGDAASAGGAGLGDDQQMQLLRAALQSNPELIQPLLEQLAASNPQIASLIQQDPEAF 254
Query: 327 LRL--------INEPVEGGE-GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVL 377
+R + +EG E G G+ + ++ +++ AI RL +GF+R LV+
Sbjct: 255 IRTFLGAGGEDLGFEIEGDESGFTGGEAGEEGTVRIQLSEQDQSAINRLCELGFERDLVI 314
Query: 378 EVFFACNKNEELAANYLLDHM 398
+V+ AC+KNEE+AA+ L M
Sbjct: 315 QVYLACDKNEEVAADILFRDM 335
>gi|340505565|gb|EGR31882.1| uv excision repair protein, putative [Ichthyophthirius multifiliis]
Length = 395
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 121/242 (50%), Gaps = 40/242 (16%)
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTAVP 222
AS++V G+ LEA + I MG ++R VI+AL+AAYNNPERAVEYL SG IP + A
Sbjct: 122 ASDMVMGAELEAKIADIESMG---FERSKVIQALKAAYNNPERAVEYLLSGHIPSRPAFE 178
Query: 223 PVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLR 282
+ Q G + N+G G L L
Sbjct: 179 QPPQQPQQPQQGGVLGEEGV------------------------GNLG---GLEELQQLA 211
Query: 283 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 342
+ QFQ + ++ NP +LQP++ +L + NP L L+Q++ FL+L+ + GGE +
Sbjct: 212 QNPQFQQIAMAIRQNPALLQPIMLQLAQSNPQLATLLQQNPQAFLQLLMQAT-GGEQCIF 270
Query: 343 GQ--------LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 394
A+ VTPEE+ I+ + ++GFD+ LE + +C+KN+ELA NYL
Sbjct: 271 FDNVILIFFFFVEVSRNAIQVTPEEKADIDEIVSLGFDKNDALEAYISCDKNKELAINYL 330
Query: 395 LD 396
D
Sbjct: 331 FD 332
>gi|157126297|ref|XP_001654581.1| uv excision repair protein rad23 [Aedes aegypti]
gi|108882553|gb|EAT46778.1| AAEL002077-PA [Aedes aegypti]
Length = 347
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 112/401 (27%), Positives = 172/401 (42%), Gaps = 68/401 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ +KTLK F+IEV E D V +K+ D YP +Q LI+ GK+++D L
Sbjct: 1 MKITIKTLKQEAFQIEVDVEKDTVRTLKEKFFQESKQD-YPVERQRLIYLGKIMEDDLPL 59
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + FVVVM N+ TT+ A P ++ T +
Sbjct: 60 SHYSLDDKKFVVVM-------------------NKKPTTAPAEPAASSSATAPAESKSST 100
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
A +S +S AA + AP P +++ VQ+
Sbjct: 101 AKSESGAQSEATAAA-----SKAPEEKPKEQEKKEEEEKPKEDKKPEEPPQDDIQIKVQR 155
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
I +MG + E AL NNP+RAVEYL S I + +GG +
Sbjct: 156 ITEMG---YSLEEARIALEICDNNPDRAVEYLLSEIATSSMGGGGGGGGSGGGSAAVSGG 212
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 299
T + A FLR F ++ ++Q +P
Sbjct: 213 TTQESRLA--------------------------------FLREHPTFLEMKRLLQEDPS 240
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV-----LGQLASAMPQAVT 354
+L +LQ++ NP LMR+I E+Q +FL LINE E G + L A+AM ++T
Sbjct: 241 LLPHLLQKIQSSNPDLMRIISENQVEFLSLINEGTEEPTGRMGVPRELETTAAAMVDSLT 300
Query: 355 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ + +AI+RL+A+GF LV++ + AC +NE AA++L+
Sbjct: 301 QS--DMDAIDRLKALGFPEHLVIQAYIACERNEYQAADFLV 339
>gi|58259375|ref|XP_567100.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57223237|gb|AAW41281.1| uv excision repair protein rhp23, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 406
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 131/275 (47%), Gaps = 56/275 (20%)
Query: 166 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQ------ 218
+ V G L+A + +++MG ++R+ VIRALRA++NNP+RAVEYL SG IP
Sbjct: 146 SFVTGPALQAAIDGMVEMG---FERDQVIRALRASFNNPDRAVEYLMSGNIPSVEGTAPA 202
Query: 219 ------------------------------TAVPPVARASAGGQAGNPPAQTQA---QQP 245
+ PP ASAGG A N A +A +
Sbjct: 203 APAPAAPSTPSAAAAPAQPAAPSEPAAQPVASAPP---ASAGGSADNLFAAAEAAMNRDR 259
Query: 246 AAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPML 305
PA P P G P + + Q A+R MVQ NP ++QP+L
Sbjct: 260 GVPAAAGAPG------LP-GAPGLPGAGAGMPGG-MGGGDQLSAIRQMVQQNPAMIQPLL 311
Query: 306 QELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIER 365
Q++ ++P L +LI ++ L+ G+ + M V +T EE A+ER
Sbjct: 312 QQIATEHPELAQLIAQNPEALYELLGGGGGEGDDDDEFGEGPVM--RVNLTQEEAAAVER 369
Query: 366 LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
LEA+GFDR VL+ + C+KNEELAAN+L ++M E
Sbjct: 370 LEALGFDRQTVLQAYMLCDKNEELAANFLFENMEE 404
>gi|449300177|gb|EMC96189.1| hypothetical protein BAUCODRAFT_33528 [Baudoinia compniacensis UAMH
10762]
Length = 392
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 136/263 (51%), Gaps = 42/263 (15%)
Query: 165 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 224
S L G +A V + MG + R+ + RA+RAA+ NP+RAVEYL +GIP
Sbjct: 133 SALAMGEQRQAAVANMEAMG---FPRDQIDRAMRAAFFNPDRAVEYLLNGIPASAEQEQR 189
Query: 225 ARASAGGQAGNPPAQTQAQQPAAPAPTSGPNA--NPLDLFPQG----------------- 265
A A+ A N PA Q QP A +G P++LF
Sbjct: 190 AAATPQRPASNQPAPQQQAQPPAQTGNTGATGGDEPVNLFEAAAQAGQRGGVGGNRGTGD 249
Query: 266 --------LPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMR 317
G A A LDFLRN+ QFQ LR +VQ P +L+P+LQ++ NP L +
Sbjct: 250 LAAALGGGQGGQGGQATANELDFLRNNPQFQQLRQLVQQQPAMLEPILQQVAAGNPQLAQ 309
Query: 318 LIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRA 374
+I ++ F++L+ E + +V A+P Q + VT EEREAIERL +GF+R
Sbjct: 310 MITQNPEQFMQLL---AEDADDDV------ALPPGAQQIAVTEEEREAIERLCRLGFERD 360
Query: 375 LVLEVFFACNKNEELAANYLLDH 397
L ++ +FAC+KNEELAAN+L D
Sbjct: 361 LAIQAYFACDKNEELAANFLFDQ 383
>gi|224057188|ref|XP_002299163.1| predicted protein [Populus trichocarpa]
gi|222846421|gb|EEE83968.1| predicted protein [Populus trichocarpa]
Length = 349
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 61/76 (80%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI+V+P D V VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKLTVKTLKGSHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 ENKVAENSFVVVMLTK 76
+NKV E+ F+VVML+K
Sbjct: 61 DNKVTEDGFLVVMLSK 76
>gi|367027912|ref|XP_003663240.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
gi|347010509|gb|AEO57995.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
Length = 377
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 130/244 (53%), Gaps = 39/244 (15%)
Query: 174 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 233
E + I +M ++R + A+RAA+ NP+RAVEYL +GIPE Q+
Sbjct: 144 EQRAEAIANMEAMGFERSQIDAAMRAAFFNPDRAVEYLLNGIPEHLQ-----------QS 192
Query: 234 GNPPAQTQAQQPAAPAPTSGP-NANPLDLFPQGLPNMGSNAGA----------------G 276
+ P Q A+ A N N DL Q G+ +G+ G
Sbjct: 193 ASAPRQAAQTAAASSAGADDDSNVNLFDLAAQAGRGSGARSGSGADVGTGAAAAAGQDLG 252
Query: 277 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 336
L++LR + QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI ++ FL L++E G
Sbjct: 253 NLEWLRANAQFQQLRQVVQQQPQMLEPILQQLGASNPQLAQLIAQNPDQFLSLLSES--G 310
Query: 337 GEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 393
G+ + + +P ++VT EER+AIERL +GF + ++ +FAC+KNEELAAN+
Sbjct: 311 GDDD------APLPPGAHQISVTEEERDAIERLTRLGFTQDQAIQAYFACDKNEELAANF 364
Query: 394 LLDH 397
L D
Sbjct: 365 LFDQ 368
>gi|291407419|ref|XP_002719906.1| PREDICTED: RAD23B protein-like [Oryctolagus cuniculus]
Length = 527
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 123/242 (50%), Gaps = 51/242 (21%)
Query: 174 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV-----PPVARAS 228
E V +I+ MG ++RE V+ ALRA++NNP RAVEYL G+P A PP A +S
Sbjct: 312 EQMVAEIVSMG---YEREQVLAALRASFNNPHRAVEYLLMGLPGDRASAAEVEPPQAGSS 368
Query: 229 AGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 288
G++ + +A + AA TSG +PLD+ LRN +F+
Sbjct: 369 GAGRS----SAVEADEGAA---TSGSGGHPLDV-------------------LRNLPEFE 402
Query: 289 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN--------------EPV 334
LR ++Q P +L +LQ L Q+P L ++++Q + ++ E V
Sbjct: 403 ELRRIIQHFPSLLPGVLQRLCPQDPQLEDQLRQYQEYLVHMLTTEEEEDGSEGGGGGEGV 462
Query: 335 EGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 394
+ E + + VTP+E+ AIERL+A+GF LV++ +FAC KNE LAA+ L
Sbjct: 463 DNAE---TAETVREDDSYIEVTPQEQAAIERLKALGFPEGLVIQAYFACEKNEILAASLL 519
Query: 395 LD 396
D
Sbjct: 520 SD 521
>gi|242079217|ref|XP_002444377.1| hypothetical protein SORBIDRAFT_07g020960 [Sorghum bicolor]
gi|241940727|gb|EES13872.1| hypothetical protein SORBIDRAFT_07g020960 [Sorghum bicolor]
Length = 137
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Query: 309 GKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA-MPQAVTVTPEEREAIERLE 367
G+QN + +LIQE+Q +FLR+IN+P E ++ Q A M + + V PEE EAI+RLE
Sbjct: 45 GEQNLQITQLIQENQAEFLRVINDPAGRAEESLPDQFGGAGMHRTIAVKPEENEAIQRLE 104
Query: 368 AMGFDRALVLEVFFACNKNEELAANYLLDHM 398
M FDR LVLEVFFACNK+E LAANYLLDHM
Sbjct: 105 QMTFDRDLVLEVFFACNKDEHLAANYLLDHM 135
>gi|326480573|gb|EGE04583.1| nucleotide excision repair protein RAD23 [Trichophyton equinum CBS
127.97]
Length = 255
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 102/166 (61%), Gaps = 28/166 (16%)
Query: 242 AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA-GTLDFLRNSQQFQALRTMVQANPQI 300
++ PA P+P G G AG+ G+L+FLRN+ FQ LR +VQ PQ+
Sbjct: 112 SETPATPSPAGGA---------------GETAGSLGSLEFLRNNPHFQQLRQLVQQQPQM 156
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTP 357
L+P+LQ++G NP L +LI ++Q FL+L++E V+ + +P Q+++VT
Sbjct: 157 LEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVDD---------ETQLPPGTQSISVTE 207
Query: 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
EER+AIERL +GF R V++ +FAC+KNEELAAN+L D E ED
Sbjct: 208 EERDAIERLCRLGFSRDSVIQAYFACDKNEELAANFLFDQPDENED 253
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F I+ +P DK+ DVK+ I T +G +PASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 ENKVAENSFVVVML 74
+ E F+V M+
Sbjct: 58 SYNIEEKGFIVCMV 71
>gi|320166179|gb|EFW43078.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 331
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 121/257 (47%), Gaps = 43/257 (16%)
Query: 164 ASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPE-----------RAVEYLY 212
A+ LV + E + Q+++ G ++R+ V+RALRAA+NNP+ R VE
Sbjct: 77 ANALVVDEDQERVILQLMEFG---FERDQVVRALRAAFNNPDRAAEYLFNGIPRHVEQAL 133
Query: 213 SGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSN 272
+ A Q TQ Q PA PA G DLF + G
Sbjct: 134 AQQIGGGAHQQQQPQQPQAQQQQQGQPTQTQAPA-PAQLGG------DLFAGDYEDEGDE 186
Query: 273 AGAGT------LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDF 326
L+FLR+ QF LR +VQ NP +L P+L ++G+ NP L++ I +H F
Sbjct: 187 GEDEDADGPNPLEFLRSQPQFDQLRQLVQQNPNLLPPLLAQIGQANPQLLQAIDQHPQAF 246
Query: 327 LRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIER--------LEAMGFDRALVLE 378
LRL+ EP G G A + VT EE EAI R LEA+GF V+E
Sbjct: 247 LRLLQEPAGGAPG--------AGQNVIRVTQEEHEAIARVSITERVVLEALGFSHHRVIE 298
Query: 379 VFFACNKNEELAANYLL 395
+FAC+KNE LAAN L
Sbjct: 299 AYFACDKNENLAANLLF 315
>gi|361129234|gb|EHL01146.1| putative UV excision repair protein rhp23 [Glarea lozoyensis 74030]
Length = 321
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 80/125 (64%), Gaps = 10/125 (8%)
Query: 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 337
LDFLRN+ QFQ LR +VQ NPQ+L+P+LQ++G NP L LI +H FL+L++E
Sbjct: 196 LDFLRNNAQFQQLRQVVQQNPQMLEPILQQVGAGNPQLAALIGQHPEQFLQLLSE----- 250
Query: 338 EGNVLGQL-ASAMPQAVTVTPEEREAIERLEA----MGFDRALVLEVFFACNKNEELAAN 392
+G+ L A ++VT ER AIER+ + GF R ++ +FAC+KNEELAAN
Sbjct: 251 DGDNDAPLPPGAQATQISVTEPERAAIERVSSPDITFGFPRDQAIQAYFACDKNEELAAN 310
Query: 393 YLLDH 397
+L D
Sbjct: 311 FLFDQ 315
>gi|21355163|ref|NP_651212.1| CG10694 [Drosophila melanogaster]
gi|7301100|gb|AAF56234.1| CG10694 [Drosophila melanogaster]
gi|19527925|gb|AAL90077.1| AT15685p [Drosophila melanogaster]
gi|220949914|gb|ACL87500.1| CG10694-PA [synthetic construct]
gi|220958714|gb|ACL91900.1| CG10694-PA [synthetic construct]
Length = 290
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/405 (24%), Positives = 163/405 (40%), Gaps = 117/405 (28%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++ L +E+ +V +K+ + + PA LI+ G++++D L
Sbjct: 1 MKLSIRMLDQRTITLEMNESQEVRALKQKLGNLPEV-AMPAENLQLIYSGRIMEDAMPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E ++AE+ +V+M K KV S +P VA
Sbjct: 60 EYRIAEDKIIVLM-GKKKVDKS-------------------------------SPEEKVA 87
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P PP A P P+ AP VSD +
Sbjct: 88 PT--------PPLAAGPNVLRTEDVVPSLAPNDQWVSD---------------------L 118
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+ MG G E V ALRA++N+PERA+EYL +GIP++ S G A P QT
Sbjct: 119 MSMGYGE---EEVRSALRASFNHPERAIEYLINGIPQEVV-------SEQGLAAIPSVQT 168
Query: 241 --QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 298
Q QQ A L+ R +R M+ NP
Sbjct: 169 SDQLQQLMA-----------------------------DLNITR-------MREMINQNP 192
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 358
+++ ++ L + +P + Q +Q + + +I+ GG ++ +T+T E
Sbjct: 193 ELIHRLMNRLAETDPATFEVFQRNQEELMNMIS----GGASRTPNEIEHL---QITLTAE 245
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
E A+ RLEA+GF+R + ++ + AC+K+E+LAA L+ E D
Sbjct: 246 ETAAVGRLEALGFERVMAVQAYLACDKDEQLAAEVLIRQSEEDRD 290
>gi|291416572|ref|XP_002724522.1| PREDICTED: UV excision repair protein RAD23 homolog B-like, partial
[Oryctolagus cuniculus]
Length = 365
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 102/368 (27%), Positives = 159/368 (43%), Gaps = 83/368 (22%)
Query: 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72
F I++ P V +K+ IE QG D +P + Q L++ G+VL D L + ++ E+ V V
Sbjct: 13 FHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDCQIHEHHAVTV 72
Query: 73 MLTK-----------------------------SKVSSSGASTVSAAPANQAQTTSSAPP 103
++ + + + + AAPA + SAP
Sbjct: 73 LVARPEAATTAAPATATATATAGQSHPATAALAGAGAPARGPALPAAPATSTR-AKSAPA 131
Query: 104 TSTQPTTTSQTPAPTVAPPQSVP------------ESAPPPAAPAPAPAPAPAPAPAPAP 151
TST+ + + + + + A PP AP+P P A A P
Sbjct: 132 TSTRAKSAPASVSASSTASAQPAPAGAPASPQAAGQQAGPPGAPSPTPDDAIA-GP---- 186
Query: 152 VSSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 211
SS + QAA L+ E V +I+ MG ++RE V+ ALRA++NNP RAVEYL
Sbjct: 187 --SSRAQPSEQAARALLTRPASEQMVAEIVSMG---YEREHVLAALRASFNNPHRAVEYL 241
Query: 212 YSGIPEQTAV-----PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGL 266
G+P A PP A +S G++ A A A TSG +PLD+
Sbjct: 242 LMGLPGDRASAAEVEPPQAGSSGAGRSSAVVAD-------AGATTSGSGGHPLDV----- 289
Query: 267 PNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDF 326
L N+ +FQ LR ++Q P +L +LQ + Q+P L R +++Q
Sbjct: 290 --------------LWNAPEFQLLRQILQYFPSLLPGVLQRICPQDPLLRRQFRQYQDYL 335
Query: 327 LRLINEPV 334
+ ++ P+
Sbjct: 336 VHMLTAPM 343
>gi|326469095|gb|EGD93104.1| UV excision repair protein [Trichophyton tonsurans CBS 112818]
Length = 381
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 90/131 (68%), Gaps = 12/131 (9%)
Query: 276 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 335
G+L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E V+
Sbjct: 258 GSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVD 317
Query: 336 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 392
+ +P Q+++VT EER+AIERL +GF R V++ +FAC+KNEELAAN
Sbjct: 318 D---------ETQLPPGTQSISVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAAN 368
Query: 393 YLLDHMHEFED 403
+L D E ED
Sbjct: 369 FLFDQPDENED 379
>gi|302506096|ref|XP_003015005.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
gi|291178576|gb|EFE34365.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
Length = 380
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 90/131 (68%), Gaps = 12/131 (9%)
Query: 276 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 335
G+L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E V+
Sbjct: 257 GSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVD 316
Query: 336 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 392
+ +P Q+++VT EER+AIERL +GF R V++ +FAC+KNEELAAN
Sbjct: 317 D---------ETQLPPGAQSISVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAAN 367
Query: 393 YLLDHMHEFED 403
+L D E ED
Sbjct: 368 FLFDQPDENED 378
>gi|406866963|gb|EKD20002.1| nucleotide excision repair protein RAD23 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 435
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 82/123 (66%), Gaps = 12/123 (9%)
Query: 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 337
LDFLRN+ QFQ LR +VQ P +L+P+L +G NP L +LI ++ FL+L++E + G
Sbjct: 314 LDFLRNNPQFQHLRQVVQQQPGMLEPILASVGAGNPQLAQLIGQNPDQFLQLLSE--DAG 371
Query: 338 EGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 394
+ + +P QA++VT EER AIERL A+GF R L ++ + AC+KNEELAAN+L
Sbjct: 372 DD-------APLPPGAQAISVTEEERAAIERLCALGFPRDLAIQAYIACDKNEELAANFL 424
Query: 395 LDH 397
+
Sbjct: 425 FEQ 427
>gi|302668202|ref|XP_003025675.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
gi|291189798|gb|EFE45064.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
Length = 379
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 90/131 (68%), Gaps = 12/131 (9%)
Query: 276 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 335
G+L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E V+
Sbjct: 256 GSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDVD 315
Query: 336 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 392
+ +P Q+++VT EER+AIERL +GF R V++ +FAC+KNEELAAN
Sbjct: 316 D---------ETQLPPGAQSISVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAAN 366
Query: 393 YLLDHMHEFED 403
+L D E ED
Sbjct: 367 FLFDQPDENED 377
>gi|167522036|ref|XP_001745356.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776314|gb|EDQ89934.1| predicted protein [Monosiga brevicollis MX1]
Length = 320
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 112/227 (49%), Gaps = 37/227 (16%)
Query: 174 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 233
E V ++++MG +DR V ALR A+ NP+RA EYL +G+P + A P A+
Sbjct: 119 EDDVNRLMNMG---FDRPQVEAALRRAFGNPDRAAEYLTTGMPAEEA--PSMDAT----- 168
Query: 234 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 293
P PA G P +L + L FL ++ F LR +
Sbjct: 169 -----------PDEPAGGEGEAVVPQEL-----------SEDSPLYFLASNPSFLQLRQL 206
Query: 294 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQA- 352
VQ P +L MLQ++ NP L+ LI E+Q DF L+N E G + G +A
Sbjct: 207 VQEQPHLLPSMLQQIAASNPDLVSLINENQEDFYILLNAEDENGGAPMPGAGGAAGAGGS 266
Query: 353 ----VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
V +T EE A+ERL +GFDR L L+ + AC K+E +AAN+LL
Sbjct: 267 GFPGVQLTQEEMAAVERLSQLGFDRNLALQAYIACEKDENMAANWLL 313
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+K F++++ + + +VK IE +G D YP +I+QGKVL D TL
Sbjct: 1 MKVTIKTIKDGTFDLQMGDDATIGEVKAAIEQSKG-DKYPKDGLKVIYQGKVLGDSDTLA 59
Query: 61 ENKVAENSFVVVM 73
E F+VVM
Sbjct: 60 SANFQEKDFLVVM 72
>gi|72390575|ref|XP_845582.1| UV excision repair RAD23 protein [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62358793|gb|AAX79246.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei]
gi|70802117|gb|AAZ12023.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261328991|emb|CBH11969.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 356
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 115/407 (28%), Positives = 179/407 (43%), Gaps = 71/407 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +K++ G E EV P+ KV D+KK +E S+ P S + L + +VL+D T+E
Sbjct: 1 MRIILKSVLGKKREHEVSPDTKVEDIKKFLE----SEYTPQSLR-LCYNNRVLEDPMTME 55
Query: 61 ENKVAENSFVVVMLTKSKV----SSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPA 116
+ + E++ +V + K V S SG +APA P
Sbjct: 56 QLGIGEDTVIVYVGKKQSVQQLASKSGGCASPSAPAE-------------GPAKGELNEN 102
Query: 117 PTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEAT 176
P VA SVP P P+ A APA P+ PAP S D A
Sbjct: 103 PGVAGASSVPVDVPAPSPSAQAPATTQQPS-GPAPASLRSVD---------------PAL 146
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP---EQTAVPPVARASAGGQA 233
+ I+ MG DRE V ALRAAY N +RAVE+L +GIP +Q +ASA G+A
Sbjct: 147 IDSIVAMGFN--DREQVSLALRAAYMNADRAVEFLCTGIPPHVQQQLAEADLQASAMGRA 204
Query: 234 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 293
P A T P + A + G ++ L +P++ DF R++
Sbjct: 205 AVPSAGT----PPSDAGSGGTQSD-LRRALSAIPHID--------DF----------RSL 241
Query: 294 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLI--NEPVEGGEGNVLGQLASAMPQ 351
+Q NPQ + +L + P + L Q+ +F R + + + ++ + +
Sbjct: 242 LQNNPQAFSALAGQLLENFPQVGELAQQDPEEFARFMMAGSVPDNADQTLVTAGETEVDD 301
Query: 352 AVTVTPEEREAIERLEAMG---FDRALVLEVFFACNKNEELAANYLL 395
A + E+R A+ RL +G + E + C + E+ AA++LL
Sbjct: 302 AQPLGEEDRAAVNRLVLLGEGAWGEREATEAYRMCGRREDAAAHFLL 348
>gi|296816959|ref|XP_002848816.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
gi|238839269|gb|EEQ28931.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
Length = 377
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 90/131 (68%), Gaps = 12/131 (9%)
Query: 276 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 335
G+L+FLRN+ FQ LR +VQ PQ+L+P+LQ++G NP L +LI ++Q FL+L++E ++
Sbjct: 254 GSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDID 313
Query: 336 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 392
+ +P Q+++VT EER+AIERL +GF R V++ +FAC+KNEELAAN
Sbjct: 314 D---------ETQLPPGAQSISVTEEERDAIERLCRLGFSRDSVIQAYFACDKNEELAAN 364
Query: 393 YLLDHMHEFED 403
+L D E ED
Sbjct: 365 FLFDQPDEGED 375
>gi|444723953|gb|ELW64577.1| UV excision repair protein RAD23 like protein B [Tupaia chinensis]
Length = 302
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 114/214 (53%), Gaps = 20/214 (9%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
+V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K +
Sbjct: 3 QVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVT 62
Query: 82 SGASTVSAA--PANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAP 139
+ A T + PA TSS P Q + AP P P S + PAPA
Sbjct: 63 TPAPTTTQQSNPATTTTVTSSTAPAVAQAPAPTPALAPASTPASITPVSTTVSSEPAPAS 122
Query: 140 A---PAPAPAPAPAPVSSSV------------SDVYGQAASNLVAGSNLEATVQQILDMG 184
A PA PA PV++S S+++ A S LV G + E V +I+ MG
Sbjct: 123 ATKQEKPAEKPADTPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG 182
Query: 185 GGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 218
++RE VI ALRA++NNP+RAVEYL I +
Sbjct: 183 ---YEREQVIAALRASFNNPDRAVEYLLMQISQH 213
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 57/91 (62%), Gaps = 9/91 (9%)
Query: 314 HLMRLIQEHQTDFLRLINEPVEGGEGNV---------LGQLASAMPQAVTVTPEEREAIE 364
+L+ I +HQ F++++NEPV+ G + + S + VTP+E+EAIE
Sbjct: 205 YLLMQISQHQEHFIQMLNEPVQEAGGQGGGGGSGSGGIAEAGSGHMNYIQVTPQEKEAIE 264
Query: 365 RLEAMGFDRALVLEVFFACNKNEELAANYLL 395
RL+A+GF LV++ +FAC KNE LAAN+LL
Sbjct: 265 RLKALGFPEGLVIQAYFACEKNENLAANFLL 295
>gi|356498318|ref|XP_003518000.1| PREDICTED: uncharacterized protein LOC100787330 [Glycine max]
Length = 159
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 61/76 (80%), Gaps = 1/76 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
++ F TLKGTHF ++V P D V+DVK NIE QG DVYP +Q+MLIHQGKVLKD TTLE
Sbjct: 45 LRGFEVTLKGTHFVVQVNPRDTVADVK-NIEIAQGVDVYPGAQRMLIHQGKVLKDATTLE 103
Query: 61 ENKVAENSFVVVMLTK 76
ENKV E++ VV+ML+K
Sbjct: 104 ENKVVEDNSVVIMLSK 119
>gi|357504019|ref|XP_003622298.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497313|gb|AES78516.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 416
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 290 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 349
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+N+V+E+ F+VVML+K +S+
Sbjct: 350 DNEVSEDGFLVVMLSKIWISN 370
>gi|357504017|ref|XP_003622297.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497312|gb|AES78515.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 697
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 571 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 630
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+N+V+E+ F+VVML+K +S+
Sbjct: 631 DNEVSEDGFLVVMLSKIWISN 651
>gi|336268454|ref|XP_003348992.1| RAD23 protein [Sordaria macrospora k-hell]
Length = 249
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 80/128 (62%), Gaps = 12/128 (9%)
Query: 276 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 335
G LDFLRN+ QFQ +R +VQ PQ+L+P+LQ+LG NP L ++I ++ FL
Sbjct: 129 GNLDFLRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL-------- 180
Query: 336 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
N+LG+ + VT EER+AIERL +GF + ++ +FAC+K+EELAAN+L
Sbjct: 181 ----NLLGEGGEGGSVGIAVTEEERDAIERLTRLGFPQDQAIQAYFACDKDEELAANFLF 236
Query: 396 DHMHEFED 403
D E +D
Sbjct: 237 DQGPEEDD 244
>gi|357504021|ref|XP_003622299.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497314|gb|AES78517.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 398
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 272 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 331
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+N+V+E+ F+VVML+K +S+
Sbjct: 332 DNEVSEDGFLVVMLSKIWISN 352
>gi|402224231|gb|EJU04294.1| UV excision repair protein Rad23 [Dacryopinax sp. DJM-731 SS1]
Length = 411
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 112/217 (51%), Gaps = 26/217 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ KTL+ F ++ +P D V D+K I Q +P QQ +I+ GK+L D T+E
Sbjct: 1 MKLTFKTLQQKQFTLDAEPSDTVLDLKHRISQDQD---FPVEQQKIIYSGKILSDTQTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E F+VVM++K K AAPA A T+ +A P +P ++ + A
Sbjct: 58 ACKIKEKDFLVVMVSKPK----------AAPA--ATTSKTATPEPAKPVASTSSSA---- 101
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
VP APA A A +++ + S G+ L+ V+ +
Sbjct: 102 ----VPSEPAVVPAPAEPVAAPAPVPAATEQPAAAAAAPAWGDQSAFFTGAALQGAVENM 157
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 217
++MG ++R V+RAL+AAYNNP+RAVEYL SGIP+
Sbjct: 158 MEMG---FERAQVMRALKAAYNNPDRAVEYLMSGIPD 191
>gi|124359456|gb|ABN05900.1| Ubiquitin [Medicago truncatula]
Length = 674
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG+HFEI V P D + VK IE +QG D YP QQ+LIH GKVLKD TTL
Sbjct: 548 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 607
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+N+V+E+ F+VVML+K +S+
Sbjct: 608 DNEVSEDGFLVVMLSKIWISN 628
>gi|212645665|ref|NP_496488.2| Protein RAD-23 [Caenorhabditis elegans]
gi|194686136|emb|CAA93780.2| Protein RAD-23 [Caenorhabditis elegans]
Length = 323
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 114/227 (50%), Gaps = 39/227 (17%)
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 237
+ +L + G +DRE I ALRAA+ NP+RAVE+L +G+P+ A
Sbjct: 131 ENVLAITGMGYDREQTIAALRAAFWNPDRAVEFLLNGLPDDAA----------------- 173
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
P GP Q + N+ + G L+ L N Q +R ++Q N
Sbjct: 174 ---------DQEPDLGP--------EQNIDNVDED-GNDDLNMLANMPQLAEIRALIQQN 215
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ--AVTV 355
P++L +LQ+L NP L++ IQ +Q F+ L+N +G P+ + +
Sbjct: 216 PEMLAAVLQQLAAVNPRLVQTIQNNQQAFMDLLNGGAQGAGAAAGNAPERNTPRRHVIHL 275
Query: 356 TPEEREAIERLEAMGFD--RALVLEVFFACNKNEELAANYLLDHMHE 400
+PEE AIER++A+ + A+V+E +FAC+KNEE A N++ ++ E
Sbjct: 276 SPEEAAAIERIKAIVVNAPEAVVVEAYFACDKNEEAAINFIFSNLDE 322
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V +TL +F +E+ + +++VK + + +G D P Q+ LI+ GK+L D +
Sbjct: 3 LSVTFRTLTQVNFNLELNEDQTIAEVKALVASEKGDDYAPELQK-LIYNGKILDDSVKVG 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSA 89
E + FVVVML+K KV+ S+ A
Sbjct: 62 EVGFDSSKFVVVMLSKRKVTEVAPSSTVA 90
>gi|167998815|ref|XP_001752113.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696508|gb|EDQ82846.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 76
Score = 103 bits (256), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/76 (63%), Positives = 61/76 (80%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG HF+++V ++ VS VK+ IE QG D +P +QQ+LIHQGKVLKD TT+
Sbjct: 1 MKISVKTLKGNHFDLQVAEDELVSSVKRKIEGSQGKDAFPCAQQLLIHQGKVLKDETTMA 60
Query: 61 ENKVAENSFVVVMLTK 76
+NKVAEN F+VVMLTK
Sbjct: 61 DNKVAENGFLVVMLTK 76
>gi|167541066|gb|ABZ82043.1| DNA repair protein, partial [Clonorchis sinensis]
Length = 156
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 77/122 (63%), Gaps = 12/122 (9%)
Query: 286 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP----------VE 335
QFQ +R +VQANP++L ++Q++G N L+RLIQE++ FL +N P +E
Sbjct: 26 QFQQMRALVQANPELLPQLIQQIGADNSELLRLIQENEQGFLEFLNAPISQDAGEPEGIE 85
Query: 336 GGEGNVLGQLASAMPQAV--TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 393
E G + P+ + T+T EER AIERL+A+GF LV++ ++AC KNE+ AAN+
Sbjct: 86 SSETTTPGNVRQGEPRQIILTMTQEERAAIERLQALGFPEELVIQAYYACEKNEDAAANF 145
Query: 394 LL 395
LL
Sbjct: 146 LL 147
>gi|395333137|gb|EJF65515.1| UV excision repair protein Rad23 [Dichomitus squalens LYAD-421 SS1]
Length = 396
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 281 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 340
L + Q Q LR ++Q NPQ+ QP++QEL QNP L +++ ++ +L++ + GEG+
Sbjct: 274 LADHPQIQHLRQLMQQNPQLAQPIIQELAAQNPGLAQVLGQNPEMLAQLLSGAL-AGEGD 332
Query: 341 VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 396
G + Q V VT EER AIERLEA+GF R V+E +FAC+KNEELAANYL D
Sbjct: 333 EGGDIPPGA-QVVHVTEEERAAIERLEALGFPRQAVIEAYFACDKNEELAANYLFD 387
>gi|363751284|ref|XP_003645859.1| hypothetical protein Ecym_3572 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889493|gb|AET39042.1| Hypothetical protein Ecym_3572 [Eremothecium cymbalariae
DBVPG#7215]
Length = 443
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 119/459 (25%), Positives = 195/459 (42%), Gaps = 83/459 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K K +++ P +++ K+ + + D SQ +I GKVL+D TL+
Sbjct: 3 ITINFKDFKKEKLPLQLSPTATIAEAKQLLAKEKQCD---ESQLKMIFSGKVLQDGHTLD 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ + V+ M++K K + + + T ++AP + +S A A
Sbjct: 60 ACKLKDGDQVIFMISKKKTGTLMSPAATTTSTETKVTEAAAP--GIRAVESSSDKAKKTA 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSD--VYGQAASNLVAGSNLEATVQ 178
PE A + A A A A P + S S+ +G V GS T++
Sbjct: 118 ---GAPEGTAMAATTSSAVAAVDAGAAQPTNTTGSDSNPPDHG-----FVTGSQRNETIE 169
Query: 179 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 238
+I++MG ++R V ALRAA+NNP+RAVEYL GIPE P S G A
Sbjct: 170 RIMEMG---YERSQVESALRAAFNNPDRAVEYLLMGIPEHLQAAPQPAGS-----GVVAA 221
Query: 239 QTQAQQPAAPAPT---------------SGPNANPLDLFPQ-GLPNMGSNAGA------G 276
+A APT G +A+ +LF Q G AG G
Sbjct: 222 SQSMDTSSAIAPTVESATAGVTTATTHTGGASAHEDNLFAQAAAAESGDTAGVTEASATG 281
Query: 277 TLDFLRNSQQ--------FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR 328
TL + Q LR ++ +P+ L P+L+ L + P + I + F+
Sbjct: 282 TLSHGSSPLQTIGLTFEDLMQLRGVINGDPEALPPLLESLSDRYPEVREQIMGNPEMFIS 341
Query: 329 LINEPV-------------------EGGEGNV-----------LGQLASAMPQAVTVTPE 358
++ + V EG +GN + ++ A + +T +
Sbjct: 342 MLLQAVGGAIPSDSLDDAMSFRTEGEGEDGNTHANSEANPDGAVVSVSEAAQDRLQLTSD 401
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
+ AI+RL +GFDR LV++V+ AC+KNE++ A+ L ++
Sbjct: 402 DITAIDRLCELGFDRDLVVQVYVACDKNEDITADMLFNN 440
>gi|354546648|emb|CCE43380.1| hypothetical protein CPAR2_210250 [Candida parapsilosis]
Length = 399
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 116/239 (48%), Gaps = 34/239 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K I+V+ D VS K+ + + D P SQ L++ GKVL+D TLE
Sbjct: 1 MQIIFKDFKKQTIPIDVELNDSVSSAKEKL--AKEKDCTP-SQIKLVYSGKVLQDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E + ++ M++K+K + + A S A A + S+ T +P ++ PTV
Sbjct: 58 ECKLKEGASIIFMISKAKETPTPAPVSSTPAAEAAASASTGDSTKVEPAGST----PTV- 112
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PAAP A AP S S GS E T+Q I
Sbjct: 113 -----------PAAPTSGAATNIEGESAPTETSEST----------FALGSERETTIQNI 151
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP--PVARASAGGQAGNPP 237
++MG ++R V ALRAA+NNP RAVEYL SGIPE P PVA A+ G +G P
Sbjct: 152 MEMG---YERPQVEAALRAAFNNPHRAVEYLISGIPESLQRPSAPVASAATGSGSGAAP 207
>gi|448512641|ref|XP_003866779.1| Rad23 protein [Candida orthopsilosis Co 90-125]
gi|380351117|emb|CCG21340.1| Rad23 protein [Candida orthopsilosis Co 90-125]
Length = 402
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 107/222 (48%), Gaps = 27/222 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K K IEV+ D VS K + Q D +SQ L++ GKVL+D TLE
Sbjct: 1 MKIIFKDFKKQTIPIEVELTDTVSSAKDKL--AQEKDCV-SSQIKLVYSGKVLQDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+ E + ++ M++K+K T + P + T + ST +T V
Sbjct: 58 ECKLKEGASIIFMISKAK------ETPTPVPGSSVPATEATASASTGDSTK-------VE 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P S P APAPA A A S+S + + S GS E T+Q I
Sbjct: 105 PAGSTP--------TAPAPASETATNAEGATASTSSTGPAETSESTFALGSERETTIQNI 156
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 222
++MG ++R V ALRAA+NNP RAVEYL SGIPE P
Sbjct: 157 MEMG---YERPQVEAALRAAFNNPHRAVEYLISGIPESLQRP 195
>gi|195504946|ref|XP_002099297.1| GE23445 [Drosophila yakuba]
gi|194185398|gb|EDW99009.1| GE23445 [Drosophila yakuba]
Length = 297
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 95/406 (23%), Positives = 161/406 (39%), Gaps = 129/406 (31%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++ L +E+ + V +K+ + ++ + P + Q LI+ G++++D L
Sbjct: 1 MKLSIRMLDQRTITLEMNETEDVRTLKQRLSSLSEVALPPENVQ-LIYSGRIMEDAMPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E ++AE +V+M G V P P V+
Sbjct: 60 EYRIAEGRIIVLM---------GKKKVDERP-----------------------PVEQVS 87
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PP + A P++ DV ASN E V+++
Sbjct: 88 PPSPL----------------------AAGPIAMRTQDVTPSIASN-------EQLVREL 118
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+ MG G D V ALRA++N+PERA+EYL +GIP
Sbjct: 119 MSMGYGEQD---VRSALRASFNHPERAIEYLINGIP------------------------ 151
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
Q A+P Q L + S L L + +R M++ NP++
Sbjct: 152 ---QEASPQ--------------QELAEIPSGQSTEELQHLMADPRLTRMREMIRENPEL 194
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLI-----------NEPVEGGEGNVLGQLASAM 349
+Q +++ L + +P +Q Q F+ ++ + P EG V
Sbjct: 195 MQLIMERLAETDPAAFEAVQHDQEGFMSMLSGAAGSAGGASHNPDEGEHFQV-------- 246
Query: 350 PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
++ EE A+ERLEA+GF+R + ++ + AC+K+E+LAA L
Sbjct: 247 ----ALSAEEAAAVERLEALGFERVMAVQAYLACDKDEQLAAEVLF 288
>gi|440633766|gb|ELR03685.1| UV excision repair protein Rad23 [Geomyces destructans 20631-21]
Length = 397
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 87/124 (70%), Gaps = 9/124 (7%)
Query: 276 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 335
G LD+LRN+ QFQ LR +VQ PQ+L+P+LQ +G NP L +LI +H FL+L+ E E
Sbjct: 273 GNLDWLRNNPQFQQLRQVVQQQPQMLEPILQSVGAGNPQLAQLIGQHPEQFLQLLGE--E 330
Query: 336 GGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 393
G EG+ L A P A ++VTPEE EAIERL +GF+R L ++ +FAC+KNEELAAN+
Sbjct: 331 GEEGDAL-----APPGATQISVTPEESEAIERLCGLGFERDLAIQAYFACDKNEELAANF 385
Query: 394 LLDH 397
L +
Sbjct: 386 LFEQ 389
>gi|195573349|ref|XP_002104656.1| GD21063 [Drosophila simulans]
gi|194200583|gb|EDX14159.1| GD21063 [Drosophila simulans]
Length = 288
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 102/406 (25%), Positives = 166/406 (40%), Gaps = 121/406 (29%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQM-LIHQGKVLKDVTTL 59
MK+ ++ L +E+ +V +K+ + + +V A++ + LI+ G++++D L
Sbjct: 1 MKLSIRMLDQRTITLEMDESQEVRALKQRLG--KSPEVAMAAENLQLIYNGRIMEDAMPL 58
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E ++AE+ +V+M K + S PP + APT
Sbjct: 59 SEYRIAEDKIIVLMGKKRVIES--------------------PP--------EEQVAPT- 89
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
PP A P AP+ AP V+D
Sbjct: 90 -----------PPLAAGPTVLRTEDVAPSLAPNDQWVND--------------------- 117
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
++ MG G E V ALRA++N+PERA+EYL +GIP++ A S G A P Q
Sbjct: 118 LMSMGYGE---EEVRSALRASFNHPERAIEYLINGIPQEVA-------SEQGLAAVPNVQ 167
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 299
Q L L +R M+ NP+
Sbjct: 168 ASEQ----------------------------------LQHLLADPSITRMREMLNQNPE 193
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGNVLGQLASAMPQAVTVTP 357
++ ++ L + +P + +Q DFL +I+ GG N +G L +T+T
Sbjct: 194 LMHRLMDRLAETDPATFEALGSNQ-DFLNMIS----GGARRTNEVGHLE------ITLTA 242
Query: 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
EE A+ RLEA+GF+R + ++ + AC+K+E+LAA L+ E D
Sbjct: 243 EEAAAVGRLEALGFERVMAVQAYLACDKDEQLAAEILIRQSEEDRD 288
>gi|349803947|gb|AEQ17446.1| putative rad23b [Hymenochirus curtipes]
Length = 286
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 119/248 (47%), Gaps = 40/248 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ F+I++ E+ V +K+ IE +G + +P + Q LI+ GK+L D
Sbjct: 1 MQITLKTLQQQTFKIDIDSEETVKALKEKIELEKGKEAFPVAGQKLIYAGKILND----- 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ A + LT + ++ A + PA A PTS +PTTT+ A
Sbjct: 56 DTATAAPAPASPPLTYTPIARQNAPVLPTVPA-------PAVPTS-EPTTTT-------A 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P + +PP +P+ P SS ++ A S LV G + E V +I
Sbjct: 101 PKEEEKTDSPPETM-------SPSSTECSVPSDSSRPSLFVDATSALVTGQSYENMVTEI 153
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+ MG ++RE VI ALRA++NNP+RAVEYL GIP GQA P QT
Sbjct: 154 MSMG---YEREQVIAALRASFNNPDRAVEYLLVGIP----------GDREGQAVADPPQT 200
Query: 241 QAQQPAAP 248
A P P
Sbjct: 201 LASTPTQP 208
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 39/51 (76%), Gaps = 2/51 (3%)
Query: 353 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+ VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL F+D
Sbjct: 237 IQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL--QQNFDD 285
>gi|169597111|ref|XP_001791979.1| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
gi|160707447|gb|EAT90986.2| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
Length = 386
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 129/253 (50%), Gaps = 55/253 (21%)
Query: 165 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV--- 221
S L G+ EA V + MG + R + A+RAA+ NP+RAVEYL +GIP+
Sbjct: 112 SALTMGNEREAAVANMESMG---FARADIDAAMRAAFFNPDRAVEYLLTGIPDSARQEQA 168
Query: 222 -------PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNA- 273
P +AGG G A AP+ G P++LF G A
Sbjct: 169 QAAQANAPSSPTPAAGGNTG-----------ATAAPSGGDE--PINLFEAARGGSGGAAR 215
Query: 274 ----------------GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMR 317
A +L+FLRN+ QFQ LR +VQ PQ+L+P+LQ++G NP L +
Sbjct: 216 SGATGAAAGAGGATALNANSLEFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQ 275
Query: 318 LIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRA 374
+I + FL+L+ E + + +P QA++VT +EREAIERL +GF+R
Sbjct: 276 MIAANPEQFLQLLAEDADDD---------APLPPGTQAISVTEDEREAIERLCRLGFERD 326
Query: 375 LVLEVFFACNKNE 387
+V++ +FAC+KNE
Sbjct: 327 IVIQAYFACDKNE 339
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F IE +P + + ++K I+ +G +V QQ LI+ GK+L+D T+E
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGELKAKIQADKGWEV---PQQKLIYSGKILQDANTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPAN 93
+ E F+V M++K+ + + + +SA N
Sbjct: 58 SYSIEEKGFIVCMVSKTPAAPAAPAPLSAVSQN 90
>gi|195331506|ref|XP_002032442.1| GM26556 [Drosophila sechellia]
gi|194121385|gb|EDW43428.1| GM26556 [Drosophila sechellia]
Length = 288
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 102/406 (25%), Positives = 165/406 (40%), Gaps = 121/406 (29%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQM-LIHQGKVLKDVTTL 59
MK+ ++ L + +E+ +V +K+ + V A++ + LI+ G++++D L
Sbjct: 1 MKLSIRMLDQSSITLEMDESQEVRALKQRLGN--SPKVAMAAENLQLIYNGRIMEDAMPL 58
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
E ++AE+ +V+M K + S P+ Q V
Sbjct: 59 SEYRIAEDKIIVLMGKKKVIES---------------------PSEEQ-----------V 86
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
AP PP A P AP+ AP V+D
Sbjct: 87 APT--------PPLAAGPTVLRTEDVAPSLAPNDQWVND--------------------- 117
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
++ MG G E V ALRA++N+PERA+EYL +GIP++ A S G A P Q
Sbjct: 118 LMSMGYGE---EEVRSALRASFNHPERAIEYLINGIPQEVA-------SEQGLAAVPNVQ 167
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 299
Q L L +R M+ NP+
Sbjct: 168 ASEQ----------------------------------LQHLLADPSITRMREMLNQNPE 193
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGNVLGQLASAMPQAVTVTP 357
++ ++ L + +P + +Q DFL +I+ GG N +G L +T+T
Sbjct: 194 LMHRLMDRLAETDPATYEALGRNQ-DFLNMIS----GGARRTNEVGHLE------ITLTA 242
Query: 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
EE A+ RLEA+GF+R + ++ + AC+K+E+LAA L+ E D
Sbjct: 243 EEAAAVGRLEALGFERVMAVQAYLACDKDEQLAAEILIRQSEEDRD 288
>gi|299751880|ref|XP_002911697.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea okayama7#130]
gi|298409576|gb|EFI28203.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea okayama7#130]
Length = 377
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 135/254 (53%), Gaps = 23/254 (9%)
Query: 161 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 220
G + ++G+ + VQ +++MG + +E V+RA+RA++NNP+RAV+YL +GIP
Sbjct: 136 GFGTGSFLSGAAYQNAVQNLVEMG---FPQEQVVRAMRASFNNPDRAVDYLMNGIPAHLE 192
Query: 221 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNAN-PLDLFPQGLPNMGSNA------ 273
A+ AG PA A APAP AN P +LF
Sbjct: 193 AEAAGPAAPAPAAGGAPAAAAAPAAQAPAPAPAAPANQPQNLFQLAQQQQQGGGGAGAGG 252
Query: 274 ----GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL 329
G ++ LRN+ Q A+R + NPQ Q ++Q+L +QNP + ++I D L
Sbjct: 253 PTLPGGLNIETLRNNPQIAAIRQAMAQNPQAAQALIQQLAQQNPQIAQIIGS-DPDLLTN 311
Query: 330 INEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389
+ P GEG++ V +TPEE AIERL+ +GF R +V++ +FAC+KNEEL
Sbjct: 312 LFLP---GEGDI-----PPGATVVNITPEENAAIERLQGLGFPREVVIQAYFACDKNEEL 363
Query: 390 AANYLLDHMHEFED 403
AANYL +H + +D
Sbjct: 364 AANYLFEHGFDDDD 377
>gi|242015323|ref|XP_002428309.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
gi|212512899|gb|EEB15571.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
Length = 156
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 96/194 (49%), Gaps = 40/194 (20%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSS 82
V +K+ IE +G D YPA Q LI+ GK+L D T L E K+ E F+VVM+TK K+
Sbjct: 1 VKVLKEKIEAEKGKD-YPAVNQRLIYAGKILTDETPLSEYKIDEKKFIVVMVTKPKL--- 56
Query: 83 GASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPA 142
PA A ++ S P T QT T P
Sbjct: 57 -------PPATHAGSSDSTPTPGTGDGGEKQTSDTTSNEP-------------------- 89
Query: 143 PAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYN 202
PA V+S S +GQA S L+ G +++ I+DMG + +E V RALRA++N
Sbjct: 90 ----PASENVNSGAS--FGQAESALLMGDEYNQSLRNIMDMG---YPKEQVERALRASFN 140
Query: 203 NPERAVEYLYSGIP 216
NP+RAVEYL +GIP
Sbjct: 141 NPDRAVEYLLNGIP 154
>gi|407851853|gb|EKG05558.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 108/383 (28%), Positives = 168/383 (43%), Gaps = 68/383 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++++ G+ EV P+ V VKK +E D Y L + G + ++ T+
Sbjct: 1 MKIILRSIVGSEQVREVTPDTNVETVKKFLE-----DEYNTDSLRLCYNGAIPENSKTMT 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS----------TQPTT 110
E V EN+ ++ K + A ++ P QA+T SS PTS T+P T
Sbjct: 56 ELGVKENAVFIIAGNKRNKNKPQAKPATSLPPPQAKTNSSFEPTSVGHGQGEGAITEPAT 115
Query: 111 TSQTPAPT-VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVA 169
+ AP + P+ E PPP+ AP+ A ++G +
Sbjct: 116 SGAGGAPGGITEPRQGAE--PPPSEEAPSQGLA----------------LHGVDPT---- 153
Query: 170 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 229
V I+ MG DRE V ALRAAY NP+RAVE+L +GIP
Sbjct: 154 ------LVDNIIAMG--FEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL--------- 196
Query: 230 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 289
Q N PA P+ +S ++ D + S++ + L QF
Sbjct: 197 --QRMNEPA-------INPSASSERMSSLTDRLTSHMRQDDSDSA--LYNALMQIPQFGE 245
Query: 290 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAM 349
+R++VQANP+ L ++Q+L +P ++ LIQ+ FLR++ P + G
Sbjct: 246 IRSIVQANPESLPTVVQQLRIHHPEVIGLIQQDLEGFLRIMGNPGQTEFTTSTGGGGDVP 305
Query: 350 PQAVTV--TPEEREAIERLEAMG 370
P +V++ EER AI+RL +G
Sbjct: 306 PDSVSIPLREEERVAIQRLVELG 328
>gi|310791559|gb|EFQ27086.1| UV excision repair protein Rad23 [Glomerella graminicola M1.001]
Length = 391
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 83/128 (64%), Gaps = 12/128 (9%)
Query: 273 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 332
G G LDFLRN+ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL+L+ E
Sbjct: 264 GGFGNLDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIANNPDQFLQLLGE 323
Query: 333 PVEGGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389
V+ +P QA+ VT EER+AIERL +GFDR ++ +FAC+KNEEL
Sbjct: 324 EVDDD---------VPLPPGAQAIQVTEEERDAIERLCRLGFDRDAAIQAYFACDKNEEL 374
Query: 390 AANYLLDH 397
AAN+L D
Sbjct: 375 AANFLFDQ 382
>gi|125775113|ref|XP_001358808.1| GA10501 [Drosophila pseudoobscura pseudoobscura]
gi|54638549|gb|EAL27951.1| GA10501 [Drosophila pseudoobscura pseudoobscura]
Length = 313
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 104/400 (26%), Positives = 170/400 (42%), Gaps = 89/400 (22%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL +E+ V +KK + ++ G S Q LI+ G++++D L
Sbjct: 1 MKLSIRTLDQRVITLEMDEGQNVLALKKRLVSMPGISQSVDSLQ-LIYGGRIMEDELPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E K+AE+ F+V+M K KV + P +T S+A T + P+ T A + A
Sbjct: 60 EYKIAEDKFLVLM-GKQKVQQVTKVELEKKPK---ETASAATGTGSTPS--GDTGAESYA 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P S+ P E VQ++
Sbjct: 114 TGGGNPTSSVAPN----------------------------------------EEMVQRL 133
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+ MG ++ V AL A++N+PE A+EYL + IP + +A G A
Sbjct: 134 MGMG---YEEMPVRAALSASFNHPELAIEYLIAQIPSE---------AASGTAS------ 175
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
P +P+ A ++L P L + +F LR M+ NP
Sbjct: 176 ----PVCVSPSVAEMA--VNLAP-----------------LMSDPRFAQLREMILQNPDQ 212
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 360
L+ +L ++ NP + ++ H +F+ L+N + + + Q A + Q +T E
Sbjct: 213 LEAILGQMSGSNPEVFEGLRNHHGEFVDLLNYDLSLSDDDEFPQQADS-AQQTPLTAAEA 271
Query: 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
A++RL A+GF L ++V+ ACNKNEELAA+ L E
Sbjct: 272 AAVDRLTALGFQHDLAVQVYLACNKNEELAADVLFRQSEE 311
>gi|195400082|ref|XP_002058647.1| GJ14198 [Drosophila virilis]
gi|194142207|gb|EDW58615.1| GJ14198 [Drosophila virilis]
Length = 290
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 99/396 (25%), Positives = 167/396 (42%), Gaps = 115/396 (29%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDV-YPASQQMLIHQGKVLKDVTTL 59
MK+ ++TL +E++ +DK ++ VQ ++ P LI+ G++++D L
Sbjct: 1 MKLSIRTLDQKTISLELQ-DDKQKVIQLKQRLVQLPEITQPVESLQLIYGGRIMQDDLPL 59
Query: 60 EENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTV 119
+ + E+ F+V+M T SA V
Sbjct: 60 ADYNIKEDRFIVLM-----------------------TKRSA----------------NV 80
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
P+S P P PA P P+ P E V+
Sbjct: 81 QEPESEPRQEHHPEQIV-QPAEPPRPSVTPD-----------------------EQRVRD 116
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239
++ MG ++ + V AL A++N+PERA+EYL +GIP S+ A N
Sbjct: 117 LMLMG---YEEQDVRAALSASFNHPERAIEYLITGIP-----------SSHVTAMNGTTT 162
Query: 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQ 299
T ++PA +S + A L++L +F +R +++ NP+
Sbjct: 163 T-----SSPAESSVISET-----------------AEHLNYLATDPRFAHVRDLIRQNPE 200
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEE 359
+L+ +L L + +P I+ +Q +F+ ++NEP ++ G L+ EE
Sbjct: 201 LLELVLTHLRESDPAAFEAIRSNQEEFISMLNEPT----AHLTGSLSH----------EE 246
Query: 360 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
A+ERL A+GFDR +VL ++ AC+KNEEL A+ L
Sbjct: 247 EAAVERLMALGFDRDVVLPIYLACDKNEELTADILF 282
>gi|340504527|gb|EGR30961.1| uv excision repair protein rad23, putative [Ichthyophthirius
multifiliis]
Length = 423
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 100/399 (25%), Positives = 154/399 (38%), Gaps = 93/399 (23%)
Query: 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTT 58
MK+ +KTLKG FEI + E +S +K I +G + L+H+GK L D
Sbjct: 1 MKLTIKTLKGNDFFEINFQNETTISQIKDTICQKKGEQCKENIK--LVHKGKQLNDDQKN 58
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
+E + EN F+++M+ T Q Q PA
Sbjct: 59 CQELGIKENDFLIMMVF----------------------------TKKQGQIPKQQPAEI 90
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQ 178
Q+ PP A P P +S S S E V+
Sbjct: 91 QNEQQT---QINPPVQSDSAQNHLQKP---PCQISQQQS----------TENSEFEQKVK 134
Query: 179 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 238
I MG +++ +I+AL+AA+NN ERA+EYL +G + P
Sbjct: 135 DIEAMG---FEKSKIIQALQAAFNNQERAIEYLLNGNIPILQQQQQQPNLQNQEQPLDPV 191
Query: 239 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 298
+ Q A P QFQ + +++ NP
Sbjct: 192 NLEELQALAQNP-----------------------------------QFQQIVQVIRQNP 216
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 358
Q++ P+LQEL + NP L +L+Q + FL I + + + + A+ + +
Sbjct: 217 QLILPILQELSQTNPQLAQLLQSNPQAFLSYILQQEDQQD-------DNDESNAIQLNNQ 269
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
E +E + +GFD+ LE + AC+K +ELA NYL D
Sbjct: 270 ESNDVEEIIMLGFDKNDALEAYIACDKQKELAINYLFDQ 308
>gi|24638593|ref|NP_726561.1| Rad23, isoform B [Drosophila melanogaster]
gi|22759400|gb|AAN06526.1| Rad23, isoform B [Drosophila melanogaster]
Length = 343
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 23/175 (13%)
Query: 161 GQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTA 220
+A SNL+ G TV +++MG + RE V RA+ A+YNNPERAVEYL +GIP +
Sbjct: 76 SRAESNLLMGDEYNQTVLSMVEMG---YPREQVERAMAASYNNPERAVEYLINGIPAEEG 132
Query: 221 VPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF 280
+ ++ NP + P+ P P S +A + + + +F
Sbjct: 133 T----FYNRLNESTNP-----SLIPSGPQPASATSAE-----------RSTESNSDPFEF 172
Query: 281 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 335
LR+ QF +R+++ NP +L +LQ++G+ NP L++LI E+Q FL ++N+P++
Sbjct: 173 LRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPID 227
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 35/43 (81%)
Query: 353 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ + ++++AIERL+A+GF ALVL+ +FAC KNEE AAN+LL
Sbjct: 295 IRLNRQDKDAIERLKALGFPEALVLQAYFACEKNEEQAANFLL 337
>gi|167375270|ref|XP_001739824.1| UV excision repair protein rad23 [Entamoeba dispar SAW760]
gi|165896371|gb|EDR23800.1| UV excision repair protein rad23, putative [Entamoeba dispar
SAW760]
Length = 315
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 106/402 (26%), Positives = 171/402 (42%), Gaps = 96/402 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDK-VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTT 58
MK+ VKT++G E E++PE V ++K I QG D+ S LI++ ++LKD T
Sbjct: 1 MKIIVKTIQGVLNEYEIEPETTTVGELKGMINAKQGIDIQNIS---LIYKSRMLKDNAQT 57
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
L + E +V+++ KS V + + V+ P N T P +TQP TT+Q
Sbjct: 58 LGGLGINEGDSIVMVVKKSAVPAPKPAPVTQ-PENHP--TEPVPQVTTQPITTNQ----- 109
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQ 178
P+ PV D++ V E +
Sbjct: 110 ----------------------------PSTQPV-----DIFQPQQRQQVNVEPTEENIN 136
Query: 179 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 238
+++MG + R+ I+ALR + NN A ++L SG+ + + AGG P
Sbjct: 137 HLVEMG---FLRDDAIKALRKSQNNTAIAADFLISGV----DLDNIPDQPAGGYEEEDPQ 189
Query: 239 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 298
+ P + N+ +QF L + P
Sbjct: 190 E-----------------------PNSILNL-------------TKEQFIEL---CREQP 210
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLI----NEPVEGGEGNVLGQLASAMPQAVT 354
QI++P LQ + +NP L +L++ + +I N E + Q + P
Sbjct: 211 QIIEPFLQHIESENPQLAQLMRNNPGMVYDIIKGQTNNNRVPSESQPIPQQPNHAPSQPQ 270
Query: 355 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 396
++PE+ AI+RL A+GF R+ L+ + AC+KNE+LAAN+LLD
Sbjct: 271 LSPEDNAAIDRLCALGFGRSQCLQAYIACDKNEQLAANFLLD 312
>gi|71410028|ref|XP_807329.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70871306|gb|EAN85478.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 165/382 (43%), Gaps = 66/382 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++++ G+ EV P+ V VKK +E D Y L + G +L++ T+
Sbjct: 1 MKIVLRSIVGSEQVREVTPDTNVETVKKFLE-----DEYNTDSLRLCYNGAILENSKTMT 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS----------TQPTT 110
E V EN+ ++ K + A ++AP Q +T SS PTS T P T
Sbjct: 56 ELGVKENAVFIIAGNKRNKNKPQAKPATSAPPPQTKTNSSFEPTSVGRGQWEGAITDPAT 115
Query: 111 TSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAG 170
S +S + PPP+ AP+ A ++G +
Sbjct: 116 -SGAGGAPGGIAESRQGAEPPPSEAAPSQGLA----------------LHGIDPT----- 153
Query: 171 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAG 230
V I+ MG DRE V ALRAAY NP+RAVE+L +GIP
Sbjct: 154 -----LVDNIIAMG--FEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL---------- 196
Query: 231 GQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQAL 290
Q N PA P+ +S ++ D + ++ + + L QF +
Sbjct: 197 -QRMNEPA-------INPSASSERMSSLTDRLTSHMRQ--DDSDSALYNALMQIPQFGEI 246
Query: 291 RTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP 350
R++VQANP+ L ++Q+L +P ++ LIQ+ FLR++ P + G P
Sbjct: 247 RSIVQANPESLPTVVQQLRIHHPEVIGLIQQDLEGFLRIMGNPGQTEFTTSTGGGVDVPP 306
Query: 351 QAVTV--TPEEREAIERLEAMG 370
+V++ EER A++RL +G
Sbjct: 307 DSVSIPLREEERVAVQRLVELG 328
>gi|378730563|gb|EHY57022.1| UV excision repair protein Rad23 [Exophiala dermatitidis
NIH/UT8656]
Length = 405
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 80/123 (65%), Gaps = 11/123 (8%)
Query: 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 337
L+FLRNS FQ LR +VQ P +L+P LQ++ + NP L ++I + FL+L+ E EG
Sbjct: 285 LEFLRNSPHFQQLRQLVQQQPAMLEPFLQQVAEGNPQLAQMISLNPDQFLQLLAEDQEGD 344
Query: 338 EGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 394
G +P A++VTPEER+AIERL +GF R V++ +FAC+KNEELAAN+L
Sbjct: 345 GG--------PLPPGSTAISVTPEERDAIERLCGLGFSRDQVIQAYFACDKNEELAANFL 396
Query: 395 LDH 397
+
Sbjct: 397 FEQ 399
>gi|70930440|ref|XP_737130.1| DNA repair protein RAD23 [Plasmodium chabaudi chabaudi]
gi|56512258|emb|CAH84100.1| DNA repair protein RAD23, putative [Plasmodium chabaudi chabaudi]
Length = 243
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 125/258 (48%), Gaps = 34/258 (13%)
Query: 160 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG----I 215
Y S L+ G L+ + I MG ++RE V +A+ AYNNP A++YL +G I
Sbjct: 1 YSNPESILLTGDKLKEAIDNICAMG---FERELVQKAMVLAYNNPNVAIDYLTNGFQDII 57
Query: 216 PEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA 275
E + + S NP + + + N N LD +M N+ A
Sbjct: 58 DEGHDISDIKDPSE-----NPNDRDENYSNLSNLLM---NYNLLD--ENERQDMSVNSEA 107
Query: 276 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLR-LINEPV 334
LRNS F +R +NPQ + +L+ +G+ +P L+ I+E+Q +FL L N
Sbjct: 108 -----LRNSPFFNIIRDAALSNPQRIPEILEMIGRSDPSLLEYIRENQNEFLNALQNYDT 162
Query: 335 EGGEGNVL---GQLASAMPQAV--------TVTPEEREAIERLEAMGFDRALVLEVFFAC 383
+ N L + A Q ++ E E++ +LE++GF + + LE F AC
Sbjct: 163 DNNAENDLIPNYEYADEANQNTDNFNIPIASLNESEMESVRKLESLGFPKHVALEAFIAC 222
Query: 384 NKNEELAANYLLDHMHEF 401
+KNEE+AANYL ++M+++
Sbjct: 223 DKNEEMAANYLFENMNDY 240
>gi|407926704|gb|EKG19665.1| Ubiquitin-associated/translation elongation factor EF1B
[Macrophomina phaseolina MS6]
Length = 383
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 84/126 (66%), Gaps = 12/126 (9%)
Query: 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 337
LDFLRN+ QFQ LR +VQ P +L+P+LQ++G+ NP L +LI +H FL L++E +
Sbjct: 264 LDFLRNNPQFQQLRQLVQQQPHMLEPILQQVGQGNPQLAQLIADHPEQFLSLLSEDHDDD 323
Query: 338 EGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 394
+ +P Q V++T EE EAI+RL +GF+R LV++ +FAC+KNEELAAN+L
Sbjct: 324 ---------TPLPPGAQVVSITEEESEAIDRLCRLGFERDLVVQAYFACDKNEELAANFL 374
Query: 395 LDHMHE 400
D E
Sbjct: 375 FDQPEE 380
>gi|312382824|gb|EFR28136.1| hypothetical protein AND_04281 [Anopheles darlingi]
Length = 273
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 112/222 (50%), Gaps = 35/222 (15%)
Query: 192 TVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPT 251
+VI AL NN E AVEYL +A A + Q A+ PAA P
Sbjct: 77 SVIVALEICSNNREAAVEYLMD--------------NAADMAVDLLEQQSAETPAASVPG 122
Query: 252 SGPNANPLDLFPQGL--PNMGSNAGAGT----LDFLRNSQQFQALRTMVQANPQILQPML 305
G + GL P+M AG L FLR + F ++ ++Q +P +L ++
Sbjct: 123 IGVS---------GLQAPDMAVAAGGARNERPLAFLRGNPVFFEMKRLLQEDPSLLPYLM 173
Query: 306 QELGKQNPHLMRLIQEHQTDFLRLINEPVE----GGEGNVLGQLASAMPQAVTVTPEERE 361
Q + NP+LMR+I E+Q +FL +INE E E L +A+AM ++TP + +
Sbjct: 174 QRIQYSNPNLMRIISENQEEFLAMINENSELAPDNREAQELESIAAAMVN--SLTPSDMD 231
Query: 362 AIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
AI+RL+A+G+ LV++ + AC ++E AA +L+ E ED
Sbjct: 232 AIDRLKALGYPEHLVIQAYIACERDEYKAAEFLVSQNLEDED 273
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ +KTLK F +EV E D V +K+ I + G YP +Q LI+ GKV++D L
Sbjct: 1 MKITLKTLKQQTFHVEVDVEKDTVRMLKEKIFSESGQ-AYPVERQWLIYLGKVMEDSHPL 59
Query: 60 EENKVAENSFVV 71
+ + + FV+
Sbjct: 60 SQYNLDDKKFVM 71
>gi|302417214|ref|XP_003006438.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
gi|261354040|gb|EEY16468.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
Length = 394
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 85/131 (64%), Gaps = 12/131 (9%)
Query: 276 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 335
G LDFLRN+ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL L+ E V+
Sbjct: 268 GNLDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIANNPDQFLSLLGEDVD 327
Query: 336 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 392
+P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN
Sbjct: 328 DD---------VPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAAN 378
Query: 393 YLLDHMHEFED 403
+L D + +D
Sbjct: 379 FLFDQPEDDDD 389
>gi|240256296|ref|NP_197113.4| uncharacterized protein [Arabidopsis thaliana]
gi|332004862|gb|AED92245.1| uncharacterized protein [Arabidopsis thaliana]
Length = 171
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 60/76 (78%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEIEVKP D V++VKKNIETV G+ YPA+QQ+LIH+ + L+D TT+E
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 61 ENKVAENSFVVVMLTK 76
NKV + S + +++TK
Sbjct: 61 ANKVFDKSVIAIIITK 76
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 69/101 (68%), Gaps = 4/101 (3%)
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE-GNVLGQLASAMPQAVTVTPE 358
I + L+E+ KQNP L ++I+ + F+ ++N+ E E N L Q + Q + VT
Sbjct: 74 ITKGCLEEMEKQNPPLFQMIRHNSAGFVPVLNK--ESFERDNELAQPEEDLLQ-LQVTAV 130
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH 399
+ EAI RLEAMGF+R +VLEVF ACNKNE+LAAN+LLDH+H
Sbjct: 131 DDEAINRLEAMGFERRVVLEVFLACNKNEQLAANFLLDHIH 171
>gi|9755819|emb|CAC01850.1| putative protein [Arabidopsis thaliana]
Length = 142
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 60/76 (78%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKG FEIEVKP D V++VKKNIETV G+ YPA+QQ+LIH+ + L+D TT+E
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 61 ENKVAENSFVVVMLTK 76
NKV + S + +++TK
Sbjct: 61 ANKVFDKSVIAIIITK 76
>gi|392593502|gb|EIW82827.1| UV excision repair protein Rad23 [Coniophora puteana RWD-64-598
SS2]
Length = 424
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 337
++ LRN Q Q LR +VQ+NP ++QP++Q+L QNP L + ++ ++ E G
Sbjct: 295 IEALRNHPQIQQLRELVQSNPGLIQPLVQQLAAQNPELAQAFMQNPFALANILGVDDEEG 354
Query: 338 EGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 394
+ G +P V VTPEER AIERLE +GF R +E +FAC+KNEELAANYL
Sbjct: 355 LAGMEG--GGDLPPGAHVVQVTPEERAAIERLEGLGFPRQAAIEAYFACDKNEELAANYL 412
Query: 395 LD 396
+
Sbjct: 413 FE 414
>gi|409045113|gb|EKM54594.1| hypothetical protein PHACADRAFT_258558 [Phanerochaete carnosa
HHB-10118-sp]
Length = 415
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 114/216 (52%), Gaps = 17/216 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+++ +P + V+D+KK IE G +P + Q LI+ G+VL D T+E
Sbjct: 1 MKITVKTLQQKTFQLDAEPSETVADLKKKIEEGHG---HPVATQKLIYSGQVLGDDKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V ++ + + + A A T+++ + PA ++
Sbjct: 58 SCNIKEKGFLV-LMVAKPKAEPKPAAAATPAAAAAATSAAPSNPPAAAPAAAPAPATSIP 116
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P PA A AP PA + +++D + V G++L+ VQ +
Sbjct: 117 AAAPPQPPNAPILTPAQA-----APVSTPAQSARAIND-----ENAFVTGADLQTAVQNM 166
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 216
++MG ++RE +RALRA+YNNPERAVEYL++GIP
Sbjct: 167 MEMG---FEREQAMRALRASYNNPERAVEYLFNGIP 199
>gi|346975858|gb|EGY19310.1| nucleotide excision repair protein RAD23 [Verticillium dahliae
VdLs.17]
Length = 394
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 84/130 (64%), Gaps = 12/130 (9%)
Query: 277 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 336
LDFLRN+ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL L+ E V+
Sbjct: 269 NLDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIANNPDQFLSLLGEDVDD 328
Query: 337 GEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 393
+P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+
Sbjct: 329 D---------VPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANF 379
Query: 394 LLDHMHEFED 403
L D + +D
Sbjct: 380 LFDQPEDDDD 389
>gi|403418377|emb|CCM05077.1| predicted protein [Fibroporia radiculosa]
Length = 214
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 121/214 (56%), Gaps = 19/214 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+I+ + D V+D+KK I+ QG + Q LI+ GK+L D T+E
Sbjct: 1 MKITVKTLQQKVFQIDAEGSDTVADLKKKIQDNQG---HTIESQKLIYSGKILPDSKTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
++ E F+V+M++K K V+ PA + +TS A +S P V+
Sbjct: 58 SCEIKEKDFLVLMVSKPK-------NVTNLPA-ASTSTSIAATSSPAPVPAPAPAPQPVS 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPA-PAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
P SVP + P P AP PA A P AP + + +++ + G L++T+Q
Sbjct: 110 EPPSVPSAPSPAPQPPNAPILTPAQAQPIAAPTTEQAFN----DSNSFLTGEALQSTIQN 165
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 213
+++MG ++R+ V+RALRA++NNP+RAVEYL++
Sbjct: 166 MMEMG---FERDQVMRALRASFNNPDRAVEYLFN 196
>gi|71416587|ref|XP_810308.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70874820|gb|EAN88457.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 103/383 (26%), Positives = 165/383 (43%), Gaps = 68/383 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++++ G+ EV P+ + VKK +E D Y L + G + ++ T+
Sbjct: 1 MKIVLRSIVGSEQVREVTPDTNIETVKKFLE-----DEYNTDSLRLCYNGAIPENSKTMT 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS----------TQP-T 109
E V EN+ ++ K + A ++ P Q +T SS PTS T+P T
Sbjct: 56 ELGVQENAVFIIAGNKRNKNKPQAKPATSVPPPQTKTNSSFEPTSVGHGQGEGAITEPAT 115
Query: 110 TTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVA 169
+ + + + PQ E PPP+ AP+ A + V N++A
Sbjct: 116 SGAGGASGGITEPQQGAE--PPPSEAAPSQGLA-------------LHGVDPTLVDNIIA 160
Query: 170 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASA 229
G DRE V ALRAAY NP+RAVE+L +GIP
Sbjct: 161 M---------------GFEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL--------- 196
Query: 230 GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQA 289
Q N PA P+ +S ++ D + ++ + + L QF
Sbjct: 197 --QRMNEPA-------INPSASSERMSSLTDRLTSHMRQ--DDSDSALYNALMQIPQFGE 245
Query: 290 LRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAM 349
+R++VQANP+ L ++Q+L +P ++ LIQ+ FLR++ P + G
Sbjct: 246 IRSIVQANPESLPTVVQQLRIHHPEVIGLIQQDLEGFLRIMGNPGQTEFTTSTGGGGDVP 305
Query: 350 PQAVTV--TPEEREAIERLEAMG 370
P +V++ EER AI+RL +G
Sbjct: 306 PDSVSIPLREEERVAIQRLVELG 328
>gi|392569695|gb|EIW62868.1| UV excision repair protein Rad23 [Trametes versicolor FP-101664
SS1]
Length = 388
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 10/117 (8%)
Query: 283 NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVL 342
N Q Q LR ++ NP ++QP++QE+ QNP L +L ++ +++ G++
Sbjct: 273 NHPQIQHLREIMAQNPALIQPVIQEIAAQNPQLAQLFAQNPEALAQILG-------GDLG 325
Query: 343 GQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 396
+ +P Q + VT EER AIERLEA+GF R V+E +FAC+KNEELAANYL D
Sbjct: 326 DEEEGGIPPGAQVIQVTEEERAAIERLEALGFPRQAVIEAYFACDKNEELAANYLFD 382
>gi|342883708|gb|EGU84158.1| hypothetical protein FOXB_05335 [Fusarium oxysporum Fo5176]
Length = 390
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 12/125 (9%)
Query: 276 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 335
G LDFLR++ QFQ LR +VQ PQ+L+P+LQ+LG NP L LI + FL+L+ E +
Sbjct: 263 GNLDFLRHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAELIATNPDQFLQLLGEYAD 322
Query: 336 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 392
+ +P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELAAN
Sbjct: 323 DD---------TPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAAN 373
Query: 393 YLLDH 397
+L D
Sbjct: 374 FLFDQ 378
>gi|402087037|gb|EJT81935.1| UV excision repair protein Rad23 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 377
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 81/127 (63%), Gaps = 16/127 (12%)
Query: 276 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 335
G LDFLRN+ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI + FL L+ E +
Sbjct: 253 GNLDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAANPEQFLGLLGEDAD 312
Query: 336 GGEGNVLGQLASAMP-----QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 390
+P QA++VT EER+AIERL +GFDR ++ +FAC+KNEELA
Sbjct: 313 -----------DDVPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELA 361
Query: 391 ANYLLDH 397
AN+L D
Sbjct: 362 ANFLFDQ 368
>gi|389741638|gb|EIM82826.1| UV excision repair protein Rad23 [Stereum hirsutum FP-91666 SS1]
Length = 395
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 76/124 (61%), Gaps = 15/124 (12%)
Query: 281 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN-----EPVE 335
LR++ Q LR +V NP ++QP++Q+L NP L +LI ++ +L+ + +
Sbjct: 273 LRDNPQIAQLRELVAQNPALIQPLIQQLAGSNPQLAQLIAQNPEALFQLLGGENGLDFED 332
Query: 336 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 392
GEG +P Q + +T EER+AIERLEA+GF R V+E +FAC+KNEELAAN
Sbjct: 333 DGEG-------GGLPPGAQVINITEEERQAIERLEALGFPRQAVIEAYFACDKNEELAAN 385
Query: 393 YLLD 396
YL +
Sbjct: 386 YLFE 389
>gi|326427438|gb|EGD73008.1| hypothetical protein PTSG_04717 [Salpingoeca sp. ATCC 50818]
Length = 127
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 71/128 (55%), Gaps = 18/128 (14%)
Query: 280 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEG 339
FL F LR +V NP L +LQ L NP L++LI ++Q DF LIN P
Sbjct: 11 FLHIDPAFNQLRRLVHQNPAHLPSLLQHLASSNPDLVQLINDNQEDFYHLINAPS----- 65
Query: 340 NVLGQLASAMPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 392
+AMPQ + ++PE+ EAIERL A GFDRA + +FAC+K+E AAN
Sbjct: 66 ------VAAMPQGPPPGAQGLQLSPEDAEAIERLVAFGFDRATAAQAYFACDKDENAAAN 119
Query: 393 YLLDHMHE 400
+L +H +E
Sbjct: 120 WLFEHGNE 127
>gi|340959556|gb|EGS20737.1| putative excision repair protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 376
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 122/232 (52%), Gaps = 31/232 (13%)
Query: 175 ATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAG 234
A + I +M ++R + A+RAA+NNPERAVEYL +GIP P + A Q
Sbjct: 147 ARAEAIANMEAMGFERSQIDIAMRAAFNNPERAVEYLLNGIP------PHLQQEA--QPS 198
Query: 235 NPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGA-----------GTLDFLRN 283
PA A AAPA N N DL Q GS + G L++LR+
Sbjct: 199 RSPAGASAAPSAAPAAPEDDNVNLFDLAAQQGRGSGSRGASGAGAAAQQQGLGNLEWLRH 258
Query: 284 SQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG 343
+ QFQ LR +VQ PQ+L+P+LQ L NP L +I + FL L++E G
Sbjct: 259 NSQFQQLRQVVQQQPQMLEPILQTLSASNPQLAHVIATNPDQFLELLSET---------G 309
Query: 344 QLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 392
+ +P ++VT EER+AIERL +GF + ++ +FAC+KNEELAAN
Sbjct: 310 DDDAPLPPGAHQISVTEEERDAIERLVRLGFTQDQAIQAYFACDKNEELAAN 361
>gi|401883698|gb|EJT47893.1| hypothetical protein A1Q1_03199 [Trichosporon asahii var. asahii
CBS 2479]
Length = 348
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 75/125 (60%), Gaps = 9/125 (7%)
Query: 281 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH---QTDFLRLINEPVEGG 337
L NS Q Q +R VQ NP ++QP+LQ++ NP L +++ ++ D L + +E +GG
Sbjct: 228 LANSPQLQRIRQAVQENPALIQPLLQQIAASNPGLAQMLNQNPQALYDLLGVGDED-DGG 286
Query: 338 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
E A V +T EE A+ERLE +GFDR +VL+ F AC+KNEELAANYL +
Sbjct: 287 E-----DYGGAQVMHVNLTQEEAAAVERLEQLGFDRQVVLQAFLACDKNEELAANYLFEI 341
Query: 398 MHEFE 402
E E
Sbjct: 342 AEEDE 346
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---------- 50
MK+ KT+ F I+ + + +KK I+ Q +PA Q LI+ G
Sbjct: 1 MKITFKTVTNKLFSIDADESETIGGLKKKIQEAQS---FPAELQKLIYSGGYQCSAQTNI 57
Query: 51 --KVLKDVTTLEENKVAENSFVVVMLTKSK 78
K+LKD T+ + K+ E F+VVM++K K
Sbjct: 58 PGKILKDDATVGDLKIKEKDFLVVMVSKPK 87
>gi|406700023|gb|EKD03210.1| hypothetical protein A1Q2_02493 [Trichosporon asahii var. asahii
CBS 8904]
Length = 339
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 75/125 (60%), Gaps = 9/125 (7%)
Query: 281 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEH---QTDFLRLINEPVEGG 337
L NS Q Q +R VQ NP ++QP+LQ++ NP L +++ ++ D L + +E +GG
Sbjct: 219 LANSPQLQRIRQAVQENPALIQPLLQQIAASNPGLAQMLNQNPQALYDLLGVGDED-DGG 277
Query: 338 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
E A V +T EE A+ERLE +GFDR +VL+ F AC+KNEELAANYL +
Sbjct: 278 E-----DYGGAQVMHVNLTQEEAAAVERLEQLGFDRQVVLQAFLACDKNEELAANYLFEI 332
Query: 398 MHEFE 402
E E
Sbjct: 333 AEEDE 337
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ----------- 49
MK+ KT+ F I+ + + +KK I+ Q +PA Q LI+
Sbjct: 1 MKITFKTVTNKLFSIDADESETIGGLKKKIQEAQS---FPAELQKLIYSGGYQCSAQTNI 57
Query: 50 -GKVLKDVTTLEENKVAENSFVVVMLTK 76
GK+LKD T+ + K+ E F+VVM++K
Sbjct: 58 PGKILKDDATVGDLKIKEKDFLVVMVSK 85
>gi|328865496|gb|EGG13882.1| repC-binding protein A [Dictyostelium fasciculatum]
Length = 130
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 72/121 (59%), Gaps = 10/121 (8%)
Query: 281 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 340
LRN QF LR +Q NPQ++ +LQ+ + NP L+R I E+ +FLRL + + N
Sbjct: 17 LRNHPQFAVLREAIQRNPQVITELLQQYSQSNPQLVRQITENPQEFLRLFQDQQGAPQPN 76
Query: 341 VLGQLASAMPQAVTVTPEEREAIERL-EAMGFDRALVLEVFFACNKNEELAANYLLDHMH 399
+ A+ VTPEER AIERL + G D+ V+E +FAC+KNEEL A+YL +
Sbjct: 77 QV---------AIQVTPEERAAIERLIQLTGMDKHEVIEAYFACDKNEELTASYLFERAD 127
Query: 400 E 400
E
Sbjct: 128 E 128
>gi|224003975|ref|XP_002291659.1| Rad23 like protein [Thalassiosira pseudonana CCMP1335]
gi|220973435|gb|EED91766.1| Rad23 like protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 335
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Query: 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 337
LD LR+ QF LR +VQ NP LQ +L ++G+Q P L++ I +Q +FL+++NEP+
Sbjct: 216 LDALRSHPQFDDLRRLVQTNPSTLQAVLSQIGQQQPDLLQAINANQAEFLQMMNEPMISA 275
Query: 338 --EGNVLGQLASAM-PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 394
+ V + AM Q + ++ EE A++RL MGFDR+ + + AC+KNE LAAN L
Sbjct: 276 MPQEQVQQYMNMAMQAQVLRLSEEEMAAVDRLTEMGFDRSEAAQAYLACDKNEALAANLL 335
>gi|409080544|gb|EKM80904.1| hypothetical protein AGABI1DRAFT_112618 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 409
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 286 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 345
Q Q LR +V+ NP ++QP++Q+L QNP + + + + L+L+ EG G+
Sbjct: 295 QIQQLREIVRQNPALIQPLIQQLAAQNPQMAQALAANPDMLLQLLGAGEGDEEGGPEGE- 353
Query: 346 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
Q ++VT EEREAI RLEA+GF R VLE +FAC+KNEELAANYL + F+D
Sbjct: 354 VPPGAQVISVTVEEREAIARLEALGFPRHAVLEAYFACDKNEELAANYLFE--GHFDD 409
>gi|344302977|gb|EGW33251.1| hypothetical protein SPAPADRAFT_60596 [Spathaspora passalidarum
NRRL Y-27907]
Length = 377
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 99/218 (45%), Gaps = 37/218 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ K K IEV+ D V K+ + + + ASQ L++ GKVL D TLE
Sbjct: 1 MQIIFKDFKKQTVPIEVELTDTVLSTKEKLGQAKSCE---ASQIKLVYSGKVLVDDKTLE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAP-TV 119
E K+ E ++ M++K+K S S TP P
Sbjct: 58 EYKIKEGVSIIFMISKAKSSQSS------------------------------TPQPQAA 87
Query: 120 APPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQ 179
A P+ P S P A A + A A +S V AS GS EAT+Q
Sbjct: 88 ATPEQKPASESQPKQETSQLGNAAATSAAAAAAPASDEAVTEAPASTFAVGSEREATIQN 147
Query: 180 ILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 217
I++MG +DR V ALRAA+NNP RAVEYL +GIPE
Sbjct: 148 IMEMG---YDRPQVENALRAAFNNPHRAVEYLITGIPE 182
>gi|195037074|ref|XP_001989990.1| GH18491 [Drosophila grimshawi]
gi|193894186|gb|EDV93052.1| GH18491 [Drosophila grimshawi]
Length = 282
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 105/218 (48%), Gaps = 54/218 (24%)
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 237
Q++ D+ ++ + V ALRA++N+PERA+EYL +GIP Q + +AG G
Sbjct: 111 QRVRDLILMGYEEQDVRAALRASFNHPERAIEYLITGIPNQA---DQQQTTAGSHDGAEV 167
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
++ A L++L +F +R +V+ N
Sbjct: 168 SE----------------------------------AAERLNYLATDPRFAHVRDLVRQN 193
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 357
P++L+ +L L + +P I+ +Q +F+ ++N+P A ++
Sbjct: 194 PELLELVLSHLRETDPAAFATIRNNQEEFVNMLNQPT-----------------AADLSS 236
Query: 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
++ A+ERL A+GF+R +V+ V+ AC+KNEEL A+ L
Sbjct: 237 DDEAAVERLMALGFERDVVVPVYLACDKNEELTADLLF 274
>gi|341902355|gb|EGT58290.1| hypothetical protein CAEBREN_15682 [Caenorhabditis brenneri]
Length = 316
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 117/251 (46%), Gaps = 66/251 (26%)
Query: 174 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAV----PPVARASA 229
E ++ I+++G DRE + LRAA + +RA YL++GIPE + V P RA
Sbjct: 107 EESIAAIMEIGA---DREQAVAVLRAARWSRDRAAGYLFNGIPEDSVVQEPAPQEPRAEE 163
Query: 230 -GGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQ 288
GG+A A+ +AQ+ LD L N Q +
Sbjct: 164 QGGEAPAVDAEAEAQEHE------------------------------DLDILANLPQLE 193
Query: 289 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASA 348
+R +VQ NP+ L P+LQ++ NP L+R IQ +Q +F+ ++N G GQ
Sbjct: 194 EIRQLVQQNPENLAPILQQIAAHNPRLVRTIQNNQQEFMDMLN----GA-----GQYDQN 244
Query: 349 MP------------------QAVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEEL 389
+P + V + E+ +AI R++A+ A V+E +FAC+++EE
Sbjct: 245 LPGAGAGAAGAAAGGQGGRRRVVHLNQEQLDAINRIKAIVNASEATVVEAYFACDQDEEA 304
Query: 390 AANYLLDHMHE 400
A N++ + M E
Sbjct: 305 AINFIFNTMDE 315
>gi|398407563|ref|XP_003855247.1| hypothetical protein MYCGRDRAFT_103502 [Zymoseptoria tritici
IPO323]
gi|339475131|gb|EGP90223.1| hypothetical protein MYCGRDRAFT_103502 [Zymoseptoria tritici
IPO323]
Length = 394
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 83/123 (67%), Gaps = 7/123 (5%)
Query: 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG 337
LDFLRN+ QFQ LR +VQ P +L+P+LQ++ +P L ++I ++ F++L+ E G
Sbjct: 272 LDFLRNNPQFQQLRQVVQQQPGMLEPILQQVAAGSPQLAQIITQNPEQFMQLL---AEDG 328
Query: 338 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
+ + LA+ ++ VT EER+AIERL +GF+R V++ +FAC+KNEELAAN+L D
Sbjct: 329 DDD----LAAPPGGSIAVTEEERDAIERLCRLGFERQDVIQAYFACDKNEELAANFLFDQ 384
Query: 398 MHE 400
E
Sbjct: 385 PDE 387
>gi|71022291|ref|XP_761375.1| hypothetical protein UM05228.1 [Ustilago maydis 521]
gi|46097608|gb|EAK82841.1| hypothetical protein UM05228.1 [Ustilago maydis 521]
Length = 447
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 125/259 (48%), Gaps = 45/259 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K+L G +F ++ + D + +K I+ QG + Q +I GK+L D T+
Sbjct: 1 MKILIKSLAGGNFHLDAELTDTIGTIKSKIQNEQG---HAPELQKIIFSGKILTDDKTVA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ K+ E F+VVM++K K + PA +TS A P +PT + PAP A
Sbjct: 58 DCKIKEKDFLVVMVSKPK---------APKPATAGASTSVAAPE--KPTEAALAPAPDAA 106
Query: 121 PPQSVPESAPPPAAPAP---------------------APAPAPAPAPAPAPVSSSVSDV 159
+ A P A A APA A + P S+
Sbjct: 107 RAAAEAPKGQDAAVPTSDSSSPATTATAAATTTAAAAAAAADAPASAESATPSSAQTQQP 166
Query: 160 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 219
G + S L G+ LE+ +Q +++MG ++R+ V RA+RAA+NNP+RAVEYL +GIPE
Sbjct: 167 SGTSGSFLTGGA-LESAMQSMVEMG---FERDQVQRAMRAAFNNPDRAVEYLMTGIPEHL 222
Query: 220 AVPP------VARASAGGQ 232
PP AR S+ GQ
Sbjct: 223 VNPPAAAAEAAARTSSEGQ 241
>gi|224587227|gb|ACN58624.1| UV excision repair protein RAD23 homolog A [Salmo salar]
Length = 102
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 74/104 (71%), Gaps = 10/104 (9%)
Query: 307 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMPQA-----VTVTPEE 359
+LG++NP L++ I ++Q F++++NEP G G+V +G L +A+ + + VTP+E
Sbjct: 1 QLGRENPQLLQQISQYQELFIQMLNEPA-GEVGDVPEVGDLGAAVEEGAPVNYIQVTPQE 59
Query: 360 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+EAIERL+A+GF ALV++ +FAC KNE LAAN+LL+ FED
Sbjct: 60 KEAIERLKALGFPEALVIQAYFACEKNENLAANFLLNQG--FED 101
>gi|339249469|ref|XP_003373722.1| putative UBA/TS-N domain protein [Trichinella spiralis]
gi|316970103|gb|EFV54095.1| putative UBA/TS-N domain protein [Trichinella spiralis]
Length = 521
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 126/290 (43%), Gaps = 88/290 (30%)
Query: 163 AASNLVAGSNLEATVQQILD------MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 216
A+SN V ++ T++ LD + + + +V+ AL+ AYNNP+ A++YL SG+
Sbjct: 260 ASSNTVTANDRHETMELQLDDNLVNELCMMGFRKSSVVVALKMAYNNPDVAIDYLTSGVD 319
Query: 217 ----EQTAVPPVARASAGGQ-AGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGS 271
++ +A++ GQ GN P Q
Sbjct: 320 LIRLKERIDNEIAQSRTVGQDGGNEPEYDGIAQ--------------------------- 352
Query: 272 NAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN 331
LR++ + LR +VQ +P +L ++ E+ + NP++ RLIQE+Q F++L+N
Sbjct: 353 ---------LRHNPAIKQLRLVVQRDPTMLHDVIMEIERANPNITRLIQENQEAFVQLLN 403
Query: 332 ------EPVEGGEGNVLGQLASAMPQA--------------------------------V 353
EP++ Q Q +
Sbjct: 404 ERVDQNEPMKQEVQKQQQQPQQQQQQQQQQPQQQRRRQQQQQQHQQQEQSTSSGTRIFRI 463
Query: 354 TVTPEEREAIER---LEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
+T EER+A++R L AMGF + V+E +FAC+KNE LAAN+LL + E
Sbjct: 464 HLTAEERDAVDRCQALVAMGFSESQVIEAYFACDKNEALAANFLLQSLEE 513
>gi|67466741|ref|XP_649512.1| RAD23 protein [Entamoeba histolytica HM-1:IMSS]
gi|56465972|gb|EAL44126.1| RAD23 protein, putative [Entamoeba histolytica HM-1:IMSS]
gi|449707323|gb|EMD47005.1| RAD23 protein, putative [Entamoeba histolytica KU27]
Length = 314
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 104/407 (25%), Positives = 169/407 (41%), Gaps = 107/407 (26%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDK-VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTT 58
MK+ VKT++G E E++PE V ++K I QG D+ S LI++ ++LKD
Sbjct: 1 MKIIVKTIQGILNEYEIEPETTTVGELKGMINAKQGIDIQNIS---LIYKSRMLKDNAQN 57
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAP---PTSTQPTTTSQTP 115
L + E +V+++ KS V AP Q +T S+ P PT TQP TT+Q
Sbjct: 58 LGGLGINEGDSIVMVVKKSAVPPP-----KLAPVTQPETHSTEPIQQPT-TQPITTNQ-- 109
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEA 175
P+ PV D++ V E
Sbjct: 110 -------------------------------PSTQPV-----DIFQSQQRQTVNVEPTEE 133
Query: 176 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 235
+ +++MG + R+ I+ALR + NN A ++L SG+ + +P +
Sbjct: 134 NINHLVEMG---FLRDDAIKALRKSQNNTAIAADFLISGV-DLDNIP------------D 177
Query: 236 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 295
PA + + P P G++ L Q + R
Sbjct: 178 QPAGSYEEYPQEP---------------------------GSILNLTKDQFIELCR---- 206
Query: 296 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQ---- 351
PQI++ +Q + +NP +LI+ + +I + + V + PQ
Sbjct: 207 EQPQIIESFIQHVESENPSAAQLIRNNPGMIYDIIKS--QTNDNRVPSEPQHTQPQPNHA 264
Query: 352 --AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 396
++PE+ AI+RL +GF R+ L+ + AC+KNE+LAAN+LLD
Sbjct: 265 PSQPQLSPEDNAAIDRLCGLGFGRSQCLQAYIACDKNEQLAANFLLD 311
>gi|408389579|gb|EKJ69020.1| hypothetical protein FPSE_10799 [Fusarium pseudograminearum CS3096]
Length = 115
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 65/103 (63%), Gaps = 12/103 (11%)
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVT 354
PQ+L+P+LQ+LG NP L LI + FL+L+ E + +P QA++
Sbjct: 12 PQMLEPILQQLGAGNPQLAELIASNPDQFLQLLGEYADDD---------VPLPPGAQAIS 62
Query: 355 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L D
Sbjct: 63 VTEEERDAIERLCRLGFDRDAAIQAYFACDKNEELAANFLFDQ 105
>gi|353237727|emb|CCA69693.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Piriformospora indica DSM 11827]
Length = 408
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 116/226 (51%), Gaps = 27/226 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL+ F ++V+PE V +K+ I G +P + Q LI+ GKVL D ++
Sbjct: 1 MKITIKTLQQKLFTVDVEPEQTVQAIKEKINEEHG---HPVASQKLIYSGKVLDDAKVVK 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V+M++K+K + + +++ +A+ + A + P +T++ A
Sbjct: 58 DCNFKEKDFLVLMVSKAKAAPAASTSAAASSSTSAPAAPAQPAQPPAASTSNAMDA---- 113
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P A P PA S++ + + ++ + GS LE +Q +
Sbjct: 114 -----------------TPTTTTASNPQPASESTTAAAAAPGSDTSFLTGSALETAIQGL 156
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVAR 226
+DMG ++R V RA+RA++NNP+RA +YL++GIP P AR
Sbjct: 157 MDMG---FERPQVERAMRASFNNPDRAADYLFNGIPPGLLPTPAAR 199
>gi|388856731|emb|CCF49691.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Ustilago hordei]
Length = 424
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 44/227 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K+L G +F ++ + D + +K I+ QG +P Q +I GK+L D T+
Sbjct: 1 MKILIKSLAGGNFHLDAELTDTIGTIKSKIQKEQG---HPPELQKIIFSGKILTDDKTVA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGAST---VSAAPANQAQTTSSAPPTSTQPTTTSQTPAP 117
+ + E F+VVM++K K A+ V +APA
Sbjct: 58 DCNIKEKDFLVVMVSKPKAPKPAAAADKPVESAPA------------------------- 92
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSD--VYGQAASNLVAGSNLEA 175
E A A APA + +P+S S G + + + G LE+
Sbjct: 93 --------AEEANKDDATAPAANTTATQSTTTSPISDSTEGQTTTGGDSGSFLTGGPLES 144
Query: 176 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 222
+ +++MG + RE V RA+RAA+NNP+RAVEYL +GIPE A P
Sbjct: 145 AMSSMMEMG---FQREQVQRAMRAAFNNPDRAVEYLMTGIPEHLANP 188
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVT 356
NP LQP++Q + + NP L + L L+ GG G + +P ++
Sbjct: 323 NPAALQPLVQAIAQSNPQLAEAMNHDPQGVLSLLAGGAAGGAGEEM-----ELPTLAELS 377
Query: 357 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
++R ++E++ AMG A +E +F C KN E+A Y ++ +FED
Sbjct: 378 EQDRTSVEQIVAMGIPEAKAIESYFMCGKNVEMAVQYYFENPQDFED 424
>gi|389633979|ref|XP_003714642.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|351646975|gb|EHA54835.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|440474553|gb|ELQ43290.1| hypothetical protein OOU_Y34scaffold00162g59 [Magnaporthe oryzae
Y34]
gi|440479744|gb|ELQ60492.1| hypothetical protein OOW_P131scaffold01287g24 [Magnaporthe oryzae
P131]
Length = 401
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 78/120 (65%), Gaps = 12/120 (10%)
Query: 276 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 335
G LDFLRN+ QFQ LR +VQ PQ+L+P+LQ+LG NP L +LI ++ FL L+ E +
Sbjct: 278 GNLDFLRNNTQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAQNPEQFLALLGEDAD 337
Query: 336 GGEGNVLGQLASAMP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 392
+ +P QA+ VT EER+AIERL +GF R ++ +FAC+KNEELAAN
Sbjct: 338 ED---------APLPPGAQAIAVTEEERDAIERLCRLGFGREQAIQAYFACDKNEELAAN 388
>gi|390335920|ref|XP_001176797.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Strongylocentrotus purpuratus]
Length = 467
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 98/211 (46%), Gaps = 16/211 (7%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M + +KTL+ F +E++ V ++K IE QG D +PAS Q LI+ GK+L D L
Sbjct: 1 MLIVLKTLQQQTFRVEIEDSATVRNLKDEIEKTQGKD-FPASGQKLIYAGKILSDDNPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E SFVVVM+TK + A P T ++ + VA
Sbjct: 60 SYNIDEKSFVVVMVTKRLQTEEKKEE----------KKEEAKPQETAAAASASASSAPVA 109
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ ++A A PA SSS + A S LV G + V ++
Sbjct: 110 MEEGTTKAAEEKKTEEKAAEPAAETKTQEE--SSSGLQAFHSAESTLVTGEEYQNMVTEL 167
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYL 211
+ +G + R+ VIRA++A+YNNP RA EYL
Sbjct: 168 MSLG---FPRDKVIRAMQASYNNPNRAAEYL 195
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 31/173 (17%)
Query: 160 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQT 219
+ A S LV G + V +++ +G + R+ VIRA++A+YNNP RA EYL GIP+
Sbjct: 209 FHSAESTLVTGEEYQNMVTELMSLG---FPRDKVIRAMQASYNNPNRAAEYLVVGIPDPP 265
Query: 220 AVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLD 279
P G+ P + Q + + G ++P +L+
Sbjct: 266 PETP----------GDQPPSQPSLQSSQSSSQPGGESSP------------------SLE 297
Query: 280 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 332
FL QFQ LR + ++P +L LQ LG+ NP L+++I + Q +F+ LIN+
Sbjct: 298 FLDQLPQFQQLREAISSDPAMLSQFLQSLGQSNPQLLQIISQRQEEFIALINQ 350
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 35/43 (81%)
Query: 353 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ + PEER+AIERL+ +GF LV++ +FAC+KNE LAAN+LL
Sbjct: 422 IELMPEERDAIERLKGLGFPEELVIQAYFACDKNENLAANFLL 464
>gi|440791110|gb|ELR12364.1| UBA/TSN domain containing protein [Acanthamoeba castellanii str.
Neff]
Length = 305
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 55/227 (24%)
Query: 185 GGSWDRETVIRALRAAYNNPERAVEYLYSGI----PEQTAVPPVARA--SAGGQAGNPPA 238
G +++E ++RALR A N+ + A + L SG P+Q A ++ G Q +P A
Sbjct: 119 GMGFEQEQIVRALRLARNDLQNACDLLLSGAQRTDPQQEASNLMSDLIQRMGQQNSDPQA 178
Query: 239 QTQ--AQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
Q + QQP QFQ +R+++Q
Sbjct: 179 QFEWVVQQP----------------------------------------QFQRIRSLLQT 198
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN------VLGQLASAMP 350
P + +L +LG NP L LI ++Q +FL +N+ EGG+G+ V
Sbjct: 199 RPDLFAALLTQLGGSNPQLHELISQNQAEFLEWLNDE-EGGDGDGSDIAVVQTGGGGGGG 257
Query: 351 QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
A ++ + +I RL +GF R +V + + AC KNEE+AANYL ++
Sbjct: 258 AAAQLSQRDESSITRLMELGFGRDVVRQAYLACGKNEEMAANYLFEN 304
>gi|302680567|ref|XP_003029965.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune H4-8]
gi|300103656|gb|EFI95062.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune H4-8]
Length = 383
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 77/128 (60%), Gaps = 11/128 (8%)
Query: 281 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 340
L+++ Q LR +VQ NP ++QP++Q+L + NP + + I +H ++L+ + +G
Sbjct: 262 LQSNPQIAQLRELVQQNPALVQPLVQQLAQSNPAIAQAIIQHPEAIMQLLGVDGDDFDG- 320
Query: 341 VLGQLASAM-----PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
M + VT EE+ AI+RLEAMGF R V+E +FAC+KNEELAANYL
Sbjct: 321 -----DDDMNPPPGTHVMHVTEEEQAAIQRLEAMGFPRQKVIEAYFACDKNEELAANYLF 375
Query: 396 DHMHEFED 403
D+ E +D
Sbjct: 376 DNGFEDDD 383
>gi|242793918|ref|XP_002482264.1| UV excision repair protein (RadW), putative [Talaromyces stipitatus
ATCC 10500]
gi|218718852|gb|EED18272.1| UV excision repair protein (RadW), putative [Talaromyces stipitatus
ATCC 10500]
Length = 375
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 102/217 (47%), Gaps = 32/217 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + V VK+ I +G + ASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPTETVGQVKEKIAREKG---WEASQQKLIYSGKILQDANTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E F+V M++K K ++G + A A A ++ A S Q P
Sbjct: 58 SYNIEEKGFIVCMVSKPK-PAAGGPSTPAKAAPPATPSAPAQAPSASTAAAPQVP----- 111
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
S P PA+ A A P S L GS EA + Q+
Sbjct: 112 -------STPTPASSGATTAATGEAAAFNDP-------------SALAMGSQGEAVISQM 151
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 217
MG + R + RA+RAA+ NP+RAV+YL +GIPE
Sbjct: 152 EAMG---FPRADIDRAMRAAFFNPDRAVDYLLNGIPE 185
>gi|145503696|ref|XP_001437822.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404979|emb|CAK70425.1| unnamed protein product [Paramecium tetraurelia]
Length = 324
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 103/397 (25%), Positives = 153/397 (38%), Gaps = 113/397 (28%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL G FE+EV+P D V ++K+ IE V+ + +QQ L+ +G +L D T+
Sbjct: 1 MKIIIKTLSGQTFELEVQPTDSVLNIKEKIEKVKQ---FEIAQQKLLRKGTLLVDDQTVG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + E F+VVM+ K A Q P +
Sbjct: 58 DLGIQEKDFLVVMVNVKKGPPQQQPVQQQAQQPPQQPQPVQPQQPIE------------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P P P + S Y QA NL+
Sbjct: 105 -----------------VPKPLNNPTTSNMVTGSE----YDQAIQNLIQ----------- 132
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
MG + E A++AA+NN RA+EYL +G+P PP
Sbjct: 133 --MGFAKSECEA---AMKAAFNNQNRAIEYLLNGLPVIDQPPP----------------- 170
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
QPA NAN +D Q + Q LR NPQ
Sbjct: 171 ---QPAL-------NANQVD---QNI--------------------LQLLREQFMQNPQA 197
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEER 360
+ +Q+L + NP L + IQ++ ++L+ + GEG+ +T EE
Sbjct: 198 VLQSIQQLQQTNPQLYQQIQQNPETLIQLLMGAGQ-GEGD---------EIETEITQEEE 247
Query: 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
+ + +L MGF + LE F AC+KN E AA+YL +
Sbjct: 248 QQLNQLMMMGFSKEDALEGFLACDKNVETAASYLFEK 284
>gi|238582807|ref|XP_002390045.1| hypothetical protein MPER_10744 [Moniliophthora perniciosa FA553]
gi|215452995|gb|EEB90975.1| hypothetical protein MPER_10744 [Moniliophthora perniciosa FA553]
Length = 151
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 73/123 (59%), Gaps = 8/123 (6%)
Query: 281 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGN 340
LRN+ Q Q LR + +P+ Q ++Q+L Q P L++ ++ F+RL++ +
Sbjct: 35 LRNNPQIQQLREHIAQHPESAQALIQQLAAQYPQLIQTFAQNPDAFIRLLDLDPQS---- 90
Query: 341 VLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
+A ++VT EER AIERLEA GF R VLE + AC+K+E +AANYL +H +E
Sbjct: 91 ----MAPQGSHVISVTEEERAAIERLEAFGFPRHKVLEAYLACDKDETMAANYLFEHGYE 146
Query: 401 FED 403
+D
Sbjct: 147 DDD 149
>gi|195445192|ref|XP_002070215.1| GK11154 [Drosophila willistoni]
gi|194166300|gb|EDW81201.1| GK11154 [Drosophila willistoni]
Length = 284
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 91/402 (22%), Positives = 158/402 (39%), Gaps = 124/402 (30%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +++L F +E+ V +KK++ + + A Q LI+ G++++D L
Sbjct: 1 MKLLIRSLDQKSFNVEMNVSQSVLALKKHLAGIPEISL-SAEQLQLIYAGRIMEDTQPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + + ++VM+ K+K P + + PT
Sbjct: 60 EYNIQDGK-IIVMMGKNK------------------------PVQVETPVKEELVPPT-- 92
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PP + S P P+ AP E V+++
Sbjct: 93 PPLTAQSSQQEPRRPSQAPN---------------------------------EDRVREL 119
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+ MG ++ E V ALRA++N+PERA+EYL + G PP+Q
Sbjct: 120 VSMG---YEEEEVRAALRASFNHPERAIEYLIN--------------------GLPPSQP 156
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDF--LRNSQQFQALRTMVQANP 298
S++ + D+ L + +F R ++ +P
Sbjct: 157 LPTPSTT-----------------------SSSSLSSPDWAELLSDPRFIQFRDAIRDHP 193
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPE 358
+ L+ +L+ +G+ +P + E + G N + V++TPE
Sbjct: 194 EALEGLLRRIGESDPETL---------------EAIRNGIQNGFEDDGGSESIQVSLTPE 238
Query: 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
E A+ERL ++GF R +VL+V+ AC+KNEELAA+ L E
Sbjct: 239 ELAAVERLISLGFQREMVLQVYLACDKNEELAADILFRESEE 280
>gi|145499454|ref|XP_001435712.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402847|emb|CAK68315.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 114/239 (47%), Gaps = 58/239 (24%)
Query: 163 AASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI-PEQTAV 221
+ + L++G + ++Q++ MG + RE + A++AA+NNP+RAVEYL +GI P T+
Sbjct: 124 SGTGLLSGPEYDKAIEQLMSMG---FQREECVNAMKAAFNNPDRAVEYLLNGIPPGVTSH 180
Query: 222 PPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFL 281
PP AS GQ PPA AQQP G PN
Sbjct: 181 PPAPVASGQGQ---PPA---AQQPV------------------GQPN------------- 203
Query: 282 RNSQQFQALRTMVQANPQILQPMLQELGKQ----NPHLMRLIQEHQTDFLRLINEPVEGG 337
Q Q LR + Q NPQ + +L +L +Q NP L + ++ L+++
Sbjct: 204 ----QIQQLRQLYQQNPQAVLQLLPQLLQQIQQTNPELHAQVSQNPEMLLQMLMGA---- 255
Query: 338 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 396
GQ P ++ +T +E + IE + +GF + LE + AC+KN E+A NYL +
Sbjct: 256 -----GQQQGPPPGSIQLTQQEFKDIETIMQLGFTKQDSLEGYIACDKNVEMAINYLFE 309
>gi|402588417|gb|EJW82350.1| UV excision repair protein Rad23 [Wuchereria bancrofti]
Length = 190
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 97/221 (43%), Gaps = 56/221 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V KT+ FEIE+ P + +VK I +G YP Q LI+ GKVL D T+E
Sbjct: 1 MLVTFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPTECQKLIYNGKVLDDAQTVE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + + FVVVM+ + K
Sbjct: 61 EVMIDPSKFVVVMIARKK------------------------------------------ 78
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPA-PAPVSSSVSDVYGQAASNLVAG--SNLEATV 177
P AP + P P+ PA A A APVS + S G + G S E T
Sbjct: 79 -----PIGAPVESTPQPSNLQIPAGAQATTAPVSVADS---GPSTPQNPDGLTSEQEETA 130
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 218
Q I+ MG + R+ VIRALRA++ N +RAVEYL SGIPE+
Sbjct: 131 QAIVAMG---YPRDKVIRALRASFFNGDRAVEYLCSGIPEE 168
>gi|342320043|gb|EGU11986.1| Uv excision repair protein rhp23, putative [Rhodotorula glutinis
ATCC 204091]
Length = 403
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 109/215 (50%), Gaps = 24/215 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+++ KTL+ F IE +P + V+D+KK I+ QG +PA Q +I GK+L D T+
Sbjct: 2 VRIQFKTLQQKQFFIEAEPTETVADLKKKIQADQG---FPAESQKIIFSGKILPDEKTVG 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E E F VVM+ K K + + A+ SAAP+ A + + + + P
Sbjct: 59 EANFKEKDFCVVMVAKPKAAPASAAATSAAPSTPAAAPAPPQTPAQPASAPASAPNAPGP 118
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
S +A PAPA A PA A++ ++GS LE ++ ++
Sbjct: 119 AAPSSAPAATEAETPAPA-------ANQPA-----------DEATSFISGSALETSISEM 160
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 215
+ MG + RE V RA+RA++NNP RAVEYL +GI
Sbjct: 161 VAMG---FPREQVQRAMRASFNNPHRAVEYLMTGI 192
>gi|321250146|ref|XP_003191705.1| uv excision repair protein rhp23 [Cryptococcus gattii WM276]
gi|317458172|gb|ADV19918.1| uv excision repair protein rhp23, putative [Cryptococcus gattii
WM276]
Length = 394
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 286 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 345
Q A+R MVQ NP ++QP+LQ++ ++P L +LI ++ L+ G+ +
Sbjct: 280 QLSAIRQMVQQNPAMIQPLLQQIATEHPELAQLIAQNPEALYELLGGGGGEGDDDDEFGE 339
Query: 346 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
M V +T EE A+ERLEA+GFDR VL+ + C+KNEELAAN+L ++M E
Sbjct: 340 GPVMR--VNLTQEEAAAVERLEALGFDRQTVLQAYMLCDKNEELAANFLFENMEE 392
>gi|159475896|ref|XP_001696050.1| hypothetical protein CHLREDRAFT_80907 [Chlamydomonas reinhardtii]
gi|158275221|gb|EDP00999.1| predicted protein [Chlamydomonas reinhardtii]
Length = 370
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 281 LRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN-------EP 333
LRN+ F LR V +P+ L P+LQ+LG+ NP L+++I +HQ FL ++ +
Sbjct: 244 LRNNPAFGMLRAAVAQDPRALVPLLQQLGRTNPELVQVINQHQQAFLAMLTEAGDDDEDD 303
Query: 334 VEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANY 393
G V ++P++ AI RL A+GFDR LE + AC++NEE+AAN+
Sbjct: 304 AMAALLGGAGGGGEGGGMVVELSPDDEAAIGRLAALGFDRNACLEAYLACDRNEEMAANF 363
Query: 394 LLDHMHE 400
L ++M +
Sbjct: 364 LAENMFD 370
>gi|405118128|gb|AFR92903.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
grubii H99]
Length = 390
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 286 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 345
Q A+R MVQ NP ++QP+LQ++ ++P L +LI ++ L+ G+ +
Sbjct: 276 QLSAIRQMVQQNPAMIQPLLQQIATEHPELAQLIAQNPEALYELLGGGGGEGDDDDEFGE 335
Query: 346 ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
M V +T EE A+ERLEA+GFDR VL+ + C+KNEELAAN+L ++M E
Sbjct: 336 GPVMR--VNLTQEEAAAVERLEALGFDRQTVLQAYMLCDKNEELAANFLFENMEE 388
>gi|116207852|ref|XP_001229735.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
gi|88183816|gb|EAQ91284.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
Length = 392
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 101/218 (46%), Gaps = 34/218 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P D +S VK+ I +G D Q LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFVLDVEPTDLISAVKQRISEQRGWD---PKLQKLIYSGKILKDEDTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV ++ K K + + ++ SA PA A SS P P TS T A
Sbjct: 58 TYKIEEKGFVVCVVNKPKPAPAPEASSSAVPATPAPAQSSTPAPPAAPAQTSGTAAAV-- 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PA P P AP AP A+ L G E + I
Sbjct: 116 -----------PATPTPNRTAAPEAAP--------------NDANALATG---EQRAEAI 147
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 218
+M ++R + A+RAA+ NP+RA+ ++ GIPE
Sbjct: 148 ANMEAMGFERAQIDAAMRAAFYNPDRAL-TIHKGIPEH 184
>gi|403370790|gb|EJY85262.1| Ubiquitin [Oxytricha trifallax]
Length = 411
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 190 RETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPA 249
R+ I ALRAA+NNP+RA EYL SG+ Q G G+ + +
Sbjct: 147 RDQCILALRAAFNNPDRAFEYLLSGVNLQALASQPGGQEGAGAGGDDMGDDYGDEEGSSD 206
Query: 250 PTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELG 309
P G NP Q PN F +R + +PQ Q + +L
Sbjct: 207 PFGGA-GNPFAALAQN-PN------------------FALIRQRILQDPQFYQQFMSQLQ 246
Query: 310 KQNPHLMRLIQEHQTDFLRLI------------NEPVEGGEGNVLGQLASAMPQAVTVTP 357
+ P L LIQ++ F+ LI G G + P ++ VT
Sbjct: 247 QTQPQLFALIQQNPAAFMNLILAGDPNAGLAGMAGAGAGAGHAHGGAGGANPPGSIRVTQ 306
Query: 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+E EAI RL ++GF + E +FAC+KNEELAANYL + E E+
Sbjct: 307 DEMEAINRLTSLGFPKHKAAEAYFACDKNEELAANYLFETGFEDEE 352
>gi|194909981|ref|XP_001982049.1| GG11252 [Drosophila erecta]
gi|190656687|gb|EDV53919.1| GG11252 [Drosophila erecta]
Length = 297
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/402 (22%), Positives = 153/402 (38%), Gaps = 121/402 (30%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++ L +E+ V +K+ + + + PA LI+ G++++D L
Sbjct: 1 MKLSIRMLDQHTITLEMNESQDVKTLKQILGNLPEVSL-PAENVQLIYSGRIMEDAMPLS 59
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E +AE +V+M K + S P PT
Sbjct: 60 EYNIAEGRIIVLMGKK-------------------KADVSLPEEQVSPT----------- 89
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+P +A P P+ AP E V +
Sbjct: 90 ----IPLAAEPMRTQDVTPSMAPN-----------------------------EQWVCDL 116
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+ MG G + V ALRA++N+PERA+EYL +GIP++ + P
Sbjct: 117 MSMGYGE---QEVRSALRASFNHPERAIEYLINGIPQEAS----------------PEHE 157
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
A+ P S L L + +R M++ NP++
Sbjct: 158 LAEIP-------------------------SGQSTEQLQHLMGDPRLTQVREMIRENPEL 192
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV-------LGQLASAMPQAV 353
+Q +L+ L +P + Q + ++ V G G+ G+L V
Sbjct: 193 MQLILERLADTDPAAFEDVHRDQEGLMTMLA-GVAGSVGDANHNHNPDEGELLQ-----V 246
Query: 354 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+T EE A+ERLEA+GF+R + ++ + AC+K+E+LAA L+
Sbjct: 247 ALTAEEAAAVERLEALGFERVMAVQAYLACDKDEQLAAEVLI 288
>gi|157872825|ref|XP_001684939.1| UV excision repair RAD23-like protein [Leishmania major strain
Friedlin]
gi|68128009|emb|CAJ06783.1| UV excision repair RAD23-like protein [Leishmania major strain
Friedlin]
Length = 425
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 118/427 (27%), Positives = 184/427 (43%), Gaps = 59/427 (13%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVK+ +E D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSMMLA 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ V +N +V+ K K+ A + P +A SSAP +ST P S T +
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAETPTTEAAPESSAPASSTPPPAMSAPALTTTS 115
Query: 121 PPQS-----VPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEA 175
P S P A P AA AP + PA PA ++S ++ YG A NL
Sbjct: 116 PATSAAPVDPPAPAVPTAAAAPVTSTTPAGPAVPAAPAASTTNTYG-VAPNL-------- 166
Query: 176 TVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGN 235
+ ++ MG DR + ALRAA+ N ERAVEYL+ GIP V +
Sbjct: 167 -IDEVASMGFE--DRSQIALALRAAFMNVERAVEYLFEGIPSHL----VEELAPFSAPAA 219
Query: 236 PPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQ 295
P A A P+A + T+ A+ + S A L QF +R +
Sbjct: 220 PAAAPGASNPSASSATAVAPASASPAPAATPSSAESEMRAA----LSRIPQFDEIRILYN 275
Query: 296 ANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------------------ 337
N L ++Q++ ++P + I+ FL +++E + G
Sbjct: 276 QNTDTLPVVMQQIALRHPAVYEQIERDPEVFLSIMSESGQPGTASAPAGSAAPSTAQAVA 335
Query: 338 ----EGNVLGQLASAMPQAVTVTPEEREAIERLEAMG---FDRALVLEVFFACNKNEELA 390
E + + QL S + +T E+R A+++L +G +D V+ A +N+E+A
Sbjct: 336 GDAEESSFMNQLQSGLE----LTAEDRTAVQQLVELGGGMWDEQSAALVYLATQRNQEVA 391
Query: 391 ANYLLDH 397
A+ L +H
Sbjct: 392 ASVLFEH 398
>gi|154342013|ref|XP_001566958.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064283|emb|CAM40483.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 433
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 114/454 (25%), Positives = 183/454 (40%), Gaps = 105/454 (23%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVKK + D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKKLL-----VDEYEPASLRLCFNGAVLEDSKILA 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ V +N F+V+ K K+ ++ P+ + Q T +AP S AP A
Sbjct: 56 DAGVKDNDFLVLAGRKRKIPKP-----ASMPSAEPQKTEAAPEFS----------APLSA 100
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAP--------------------------------- 147
+APPPA P A
Sbjct: 101 -------TAPPPAMPTSASTTTSTADSAAPAVPAATTAPATAPAPAPAPAPAPAPVAPTP 153
Query: 148 ---APAPVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNP 204
+ PV+S+ S +YG A NL + ++ M G DR + ALRAA+ N
Sbjct: 154 PAGSAIPVASAAS-IYG-VAPNL---------IDEVAAM--GFEDRNQIALALRAAFMNV 200
Query: 205 ERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPNANPLDLFPQ 264
+RAVEYL+ GIP V ++ G P +A P+A + T+ A P+
Sbjct: 201 DRAVEYLFDGIPPHL----VEELTSHGLPAAPAEAPRASNPSASSATA---AVPVST-SL 252
Query: 265 GLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQT 324
S A + D L QF +RT+ N L ++Q++ ++P + I+ +
Sbjct: 253 ASAATLSTAASEMRDALSRIPQFDEIRTLYNQNTDTLPVVMQQIALRHPAVYEQIERNPE 312
Query: 325 DFLRLINEPVEGGEGNV------------------LGQLASAMPQAVTVTPEEREAIERL 366
FL ++ E + G N G + + V +T E+R A+++L
Sbjct: 313 VFLSIMGEAGQPGTSNAPPGSVASPTAEAVVGDTEEGSFMNELQAGVELTAEDRMAVQQL 372
Query: 367 EAMG---FDRALVLEVFFACNKNEELAANYLLDH 397
+G +D + V+ A +N+E+AA+ L +H
Sbjct: 373 VELGGGMWDEQSAVLVYLATQRNQEVAASVLFEH 406
>gi|393217532|gb|EJD03021.1| UV excision repair protein Rad23 [Fomitiporia mediterranea MF3/22]
Length = 406
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 72/121 (59%), Gaps = 5/121 (4%)
Query: 286 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQL 345
Q R V NP +LQPM+Q++ + NP+L + ++++ L+L+ G
Sbjct: 287 QLGQFRNTVMQNPALLQPMIQQIAQSNPNLAQYLEQNPEALLQLLGAIGGEGGLEEGEGG 346
Query: 346 ASAMPQAVTV---TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 402
+P TV TPEER AIERLEA+GF R V+E +FAC+KNEE+AANYL + + FE
Sbjct: 347 EGGIPPGATVLQVTPEERAAIERLEALGFPRQQVVEAYFACDKNEEMAANYLFE--NGFE 404
Query: 403 D 403
D
Sbjct: 405 D 405
>gi|299117286|emb|CBN75246.1| rad23b protein [Ectocarpus siliculosus]
Length = 341
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 102/247 (41%), Gaps = 50/247 (20%)
Query: 196 ALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPN 255
ALRAA+N+ RA YL GIP+ V S G A A A A +
Sbjct: 98 ALRAAFNDVSRAASYLMEGIPDN-----VGAGSGGSDARGGGDAALAAAMMAGAEDEDGD 152
Query: 256 ANPLDLFPQGLPNMGSNAGAGT-LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPH 314
MG AG G L+F+R QF LR +V+ NP +L +LQ L Q+P
Sbjct: 153 EGGGGAAGLAQALMGMEAGEGNPLNFMRFHPQFDELRGLVRENPAMLPQVLQGLATQSPE 212
Query: 315 LMRLIQEHQTDFLRLINEP--VEG---GEGNVLGQLASAMPQA----------------- 352
L+ I +H DFLRL+NEP EG E V G L +
Sbjct: 213 LIERINQHPDDFLRLMNEPPDAEGQAIMEMGVEGLLEGMDQEDDEEEEGGDAEAVAAGGG 272
Query: 353 --------------------VTVTPEEREAIERLEAM--GFDRALVLEVFFACNKNEELA 390
V +T EE ++ L AM G R V+E F AC+KN E+A
Sbjct: 273 GGSPGVGVAGGDGGQGQIVTVELTEEEDAVVQNLMAMVPGAGRDQVIEAFIACDKNAEMA 332
Query: 391 ANYLLDH 397
AN L ++
Sbjct: 333 ANLLFEN 339
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
VKTLKG F I+V E +SDVK I V+G D P + Q+LI GK LKD +L V
Sbjct: 7 VKTLKGEVFRIDVAEESVMSDVKTKISEVRGHD--PGT-QVLICGGKTLKDGDSL-AGSV 62
Query: 65 AENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSS 100
A F+V+M+ + + ++A + Q T++
Sbjct: 63 AAGGFLVLMVKALAIDPANVEMLTAMGFPEDQATAA 98
>gi|281207509|gb|EFA81692.1| repC-binding protein A [Polysphondylium pallidum PN500]
Length = 124
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 19/133 (14%)
Query: 269 MGSNAGAG---TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTD 325
M G G + LRN+ F LR +Q NP ++ +LQ+ + NP L+R I E+ +
Sbjct: 1 MAEAEGTGEPNIFEALRNNPHFPMLRETIQRNPAVIPELLQQFSQTNPGLVRQITENPQE 60
Query: 326 FLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAM-GFDRALVLEVFFACN 384
FLRL EP + A+ V+ EEREAIERL + G ++A V+E +FAC+
Sbjct: 61 FLRLFQEPQQV---------------AIQVSQEEREAIERLILLTGLEKAEVVEAYFACD 105
Query: 385 KNEELAANYLLDH 397
K+E+L A+YL +
Sbjct: 106 KDEQLTASYLFER 118
>gi|149248070|ref|XP_001528422.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448376|gb|EDK42764.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 359
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 71/128 (55%), Gaps = 15/128 (11%)
Query: 286 QFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRL--------INEPVEGG 337
Q Q LR +Q+NP+++QP+L++L NP + +I E F+R + +EG
Sbjct: 232 QMQLLRAALQSNPELIQPLLEQLSASNPQIANMISEDPEGFIRTFLGAGGEDLGFDIEGE 291
Query: 338 EGNVLGQLASAMPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 390
+ ++LG A + ++ ++ AI RL +GFDR LV++V+ AC+KNEE+A
Sbjct: 292 DADMLGGADGDGEGADAPGTVRIPISEQDENAINRLCELGFDRNLVIQVYLACDKNEEVA 351
Query: 391 ANYLLDHM 398
A+ L M
Sbjct: 352 ADILFRDM 359
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 165 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 217
S GS EAT+ I++MG +DR V ALRAA+NNP RAVEYL +GIPE
Sbjct: 61 STFALGSEREATILNIMEMG---YDRPQVEAALRAAFNNPHRAVEYLITGIPE 110
>gi|429853552|gb|ELA28621.1| nucleotide excision repair protein rad23 [Colletotrichum
gloeosporioides Nara gc5]
Length = 354
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 62/101 (61%), Gaps = 17/101 (16%)
Query: 300 ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP-----QAVT 354
+L+P+LQ LG NP L +LI + FL+L+ E V+ +P QA+
Sbjct: 255 MLEPILQ-LGAGNPQLAQLIANNPDQFLQLLGEEVD-----------DDVPLPPGAQAIA 302
Query: 355 VTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
VT EER+AIERL +GFDR ++ +FAC+KNEELAAN+L
Sbjct: 303 VTEEERDAIERLCRLGFDRDAAIQAYFACDKNEELAANFLF 343
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 91/217 (41%), Gaps = 32/217 (14%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P D +S VK+ I +G D P Q+ LI+ GK+LKD T+E
Sbjct: 1 MKVTFKDLKQQKFTLDVEPTDLISAVKQKIAGEKGWD--PKDQK-LIYSGKILKDDDTVE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E FVV M+ K K + S+
Sbjct: 58 SYKIEEKGFVVCMVNKPKAPKPAPAESSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 117
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P S A + P+ A G ++A N+EA
Sbjct: 118 XXXXAPRSTGGGDAASNDPSMA-----------------MGAQRQEVIA--NMEA----- 153
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 217
MG ++R + A+RAA+ NP+RAVEYL +GIPE
Sbjct: 154 --MG---FERSQIDAAMRAAFYNPDRAVEYLLNGIPE 185
>gi|290999563|ref|XP_002682349.1| rad23 protein [Naegleria gruberi]
gi|284095976|gb|EFC49605.1| rad23 protein [Naegleria gruberi]
Length = 385
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 106/252 (42%), Gaps = 52/252 (20%)
Query: 174 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 233
+ TVQQ L+MG +DR + ++A++ + A E+L SGIPE +
Sbjct: 153 DETVQQFLEMG---YDRNDIDECMKASFYDRATAAEFLISGIPENV------KQMMQENG 203
Query: 234 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 293
GN P P G A+ L G+ G D S Q LR
Sbjct: 204 GNLPT----------PPQGGSLASAL---------AGNQQGFSLRDLFTLSPQLNNLRNA 244
Query: 294 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGE--------------- 338
++ NP +L+ L + + +P L ++IQ + +FL +INE
Sbjct: 245 IRQNPTLLREFLTHVSQVSPELYQIIQSNPREFLEIINETGPVTGTTGTQPQTTPTTTTG 304
Query: 339 ------GNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 392
G L Q A P + ++ ++ I L +GF + ++ + AC+KN+E+AAN
Sbjct: 305 GEHPPSGEELQQ--QAPPGTIFISQDDERKINELVGLGFTKNEAIQAYLACDKNQEMAAN 362
Query: 393 YLLDHMHE-FED 403
L ++ FED
Sbjct: 363 LLFENRDRGFED 374
>gi|62362186|gb|AAX81530.1| RAD23B-like protein [Adineta ricciae]
Length = 244
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 129/301 (42%), Gaps = 57/301 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL F IE + D V +K+ I D Y A LI GK+L+D TLE
Sbjct: 1 MQLQIKTLSNEKFAIECELSDTVRTIKEKIAAKDLKDKYEADAVKLIFSGKILEDSKTLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ +SF+VV+ +G++ +AAP+N + S+ T T T T AP
Sbjct: 61 FYSITSDSFLVVVKQAPTKPQAGSAAAAAAPSNPSGAASAQTRTPTVATPTPAPAAPQQQ 120
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P + PAPA P +S S ++ + E ++++
Sbjct: 121 PTR-------------------PAPASGTTPAASQDS---------FLSAESREKALREL 152
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
DMG +DR ALRA++ + ERA EYL +G +P ++ S A NP +
Sbjct: 153 TDMG---FDRAQAELALRASFYHVERAAEYLITG-----NIPNISEPS----AANPEGGS 200
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
Q P+ ++G G G L L S QFQALR ++Q NP
Sbjct: 201 -GQTPSGSESSTG----------------GRRGGEDDLVELSQSPQFQALRQLIQQNPDQ 243
Query: 301 L 301
L
Sbjct: 244 L 244
>gi|340054316|emb|CCC48612.1| putative UV excision repair RAD23 protein, fragment, partial
[Trypanosoma vivax Y486]
Length = 299
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 140/341 (41%), Gaps = 59/341 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +K + G E EV E V D+KK +E D Y + + +VL+D T+E
Sbjct: 1 MRVILKGIDGIKHEYEVAAEATVHDIKKLME-----DEYTLESLRICYDNRVLEDSMTME 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ + + +V + K + + +T A ++ SA S Q S +
Sbjct: 56 GLGMRDRTVLVFVGRKHEKKTMSTATDVATKPSEGSARVSASSQSGQVNVESVPQSTATE 115
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PQSV + PP+A + P ++ G + A + +
Sbjct: 116 VPQSVAHN--PPSASSTETNP-------------------------MLRGVD-PALIDTV 147
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQT 240
+ MG DR V ALRAAY N +RAVE+L SGIP + P
Sbjct: 148 VSMG--FEDRTQVALALRAAYMNVDRAVEFLCSGIPSNVE-----------RDLGPVFHD 194
Query: 241 QAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
+Q P P+S A P + +G+ L +F+ +R +V+ANPQ
Sbjct: 195 DSQHGMFPIPSSMAPAAPTE-----------GSGSALEQALMAVPRFEEIREIVRANPQA 243
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV 341
+ +Q+L P + RL+Q++ +F ++ G G+V
Sbjct: 244 IASAVQQLQLHYPDIARLVQQNPQEFATIMLR--HGAAGHV 282
>gi|195144934|ref|XP_002013451.1| GL23402 [Drosophila persimilis]
gi|194102394|gb|EDW24437.1| GL23402 [Drosophila persimilis]
Length = 314
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 45/229 (19%)
Query: 174 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 233
E VQ+++ MG ++ V AL A++N+PE A+EYL + IP + +A G A
Sbjct: 127 EEMVQRLMGMG---YEEMPVRAALSASFNHPELAIEYLIAQIPSE---------AASGTA 174
Query: 234 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 293
P + +P+ A ++L P L + +F +R M
Sbjct: 175 S----------PVSVSPSVAEMA--VNLAP-----------------LMSDPRFAQVREM 205
Query: 294 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE--PVEGGEGNVLGQLASAMPQ 351
+ NP L+ +L ++ NP + ++ H +F+ L+N V + Q SA Q
Sbjct: 206 ILQNPDQLEAILGQMSGSNPEVFEALRNHHGEFVDLLNYDLSVLSDDDEFPQQADSA--Q 263
Query: 352 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
+T E A++RL A+GF L ++V+ ACNKNEELAA+ L E
Sbjct: 264 QTPLTAAEAAAVDRLTALGFQHDLAVQVYLACNKNEELAADVLFRQSEE 312
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ ++TL +E+ V +KK + ++ G S Q LI+ G++++D L
Sbjct: 1 MKLSIRTLDQRVITLEMDEGQNVLALKKRLVSMPGISQSVDSLQ-LIYGGRIMEDGLPLS 59
Query: 61 ENKVAENSFVVVMLTKSKV 79
E K+AE+ F +VM+ K KV
Sbjct: 60 EYKIAEDKF-LVMMGKQKV 77
>gi|452985526|gb|EME85282.1| hypothetical protein MYCFIDRAFT_119289, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 390
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 104/217 (47%), Gaps = 33/217 (15%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ K LK F++E +P D + VK+ I +G + S Q LI+ GK+L+D T+E
Sbjct: 1 MKLTFKDLKQAKFQVEAEPTDTIGSVKEKISKEKG---WEPSTQKLIYSGKILQDDNTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
K+ E F+V M +K K APP ++P + TPA +VA
Sbjct: 58 SYKIEEKGFIVCMTSKPK----------------------APP--SKPADPA-TPAKSVA 92
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
+ P + A A + APA + S V+ +A L G A + +
Sbjct: 93 STPAPPAAPAQFATSAASQAPATPSPAPASTASGDVATFNDPSA--LAMGEQRAAAIANM 150
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 217
MG + R+ + A+RAA+ NP+RAVEYL +GIPE
Sbjct: 151 EAMG---FPRDQIDAAMRAAFFNPDRAVEYLLNGIPE 184
>gi|145538419|ref|XP_001454915.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422692|emb|CAK87518.1| unnamed protein product [Paramecium tetraurelia]
Length = 331
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 91/215 (42%), Gaps = 53/215 (24%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL G F+IEV+P + V ++K+ IE + + +QQ L+ +G +L++ T+
Sbjct: 1 MKIIIKTLSGQTFDIEVQPTETVLNIKEKIEQ---NKQFEIAQQKLLRKGTLLQNEQTVA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
E + E F+VVM+ K Q P Q
Sbjct: 58 ELGLQEKDFLVVMVNVKKGPPQQQPVQQQVQQPPQQPQPVQPQQPIQ------------- 104
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
A P APAP N+V GS +A +Q +
Sbjct: 105 ---------------------AFKPVVAPAP-------------QNMVTGSEYDAAIQNL 130
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 215
+ MG + E A++AAYNNP+RA+EYL +GI
Sbjct: 131 IQMGFAKSECEA---AMKAAYNNPDRAIEYLLNGI 162
Score = 38.1 bits (87), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 287 FQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLA 346
Q LR NP+ + +L +L + NP L + IQ++ ++LI +GGE
Sbjct: 185 LQQLREQFIQNPEAILQLLPQLQQTNPQLYQQIQQNPEALVQLILGGHQGGED------- 237
Query: 347 SAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 396
+T EE + + +L MGF + LE F AC+KN E AA+YL +
Sbjct: 238 ---EIETEITQEEEQQLNQLIMMGFTKEDALEGFLACDKNVETAASYLFE 284
>gi|390602258|gb|EIN11651.1| UV excision repair protein Rad23 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 399
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 68/114 (59%), Gaps = 8/114 (7%)
Query: 288 QALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLAS 347
Q LR +V NP +LQ ++Q+L + NP L + + L+++ G EG LG
Sbjct: 285 QQLRELVAQNPALLQGLIQQLAENNPELANQLANNPEMLLQVL--AAAGAEG--LGDDDE 340
Query: 348 A-MP---QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397
+P Q V +T EE ++++RLE +GF R VLE + AC+KNEELAANYL ++
Sbjct: 341 GPLPPGAQVVQLTQEEMQSVQRLEQLGFSRQAVLEAYLACDKNEELAANYLFEN 394
>gi|342181674|emb|CCC91154.1| putative UV excision repair RAD23 protein, partial [Trypanosoma
congolense IL3000]
Length = 280
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 122/252 (48%), Gaps = 29/252 (11%)
Query: 123 QSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLE-ATVQQIL 181
Q+V E AP + + APA A AP P P S+ + + S++ A ++ A + I
Sbjct: 18 QNVKE-APHVSEGSEAPATASAPTPGEQP-SAETAAAAPRTGSSVAATQGVDPALIDSIA 75
Query: 182 DMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQ 241
MG DR+ + ALRAAY NP+RAVE+L++GIP V R A Q P T
Sbjct: 76 AMG--FEDRDQIALALRAAYMNPDRAVEFLFTGIPSH-----VQRELAESQLRAVPGNTS 128
Query: 242 AQQPA-APAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQI 300
A P SG + LF NA L Q + +R++V++NPQ
Sbjct: 129 VSGGVDATHPQSGRGGDTESLF---------NA-------LMAVPQMEEIRSIVRSNPQA 172
Query: 301 LQPMLQELGKQNPHLMRLIQEHQTDFLR-LINEPVEGGEGNVLGQLASAMPQAV-TVTPE 358
L ++Q+L ++ P + +L+Q+ +F+R ++ + V V A+ +A+ + E
Sbjct: 173 LGTVIQQLQERFPQIAQLVQQDPEEFMRFMVGDAVTADTEAVSDGGAALASEAIPPLREE 232
Query: 359 EREAIERLEAMG 370
ER A+ RL +G
Sbjct: 233 ERAAVNRLVVLG 244
>gi|357504261|ref|XP_003622419.1| hypothetical protein MTR_7g037380 [Medicago truncatula]
gi|355497434|gb|AES78637.1| hypothetical protein MTR_7g037380 [Medicago truncatula]
Length = 176
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 45/63 (71%)
Query: 22 KVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSS 81
++ DVK NIE +Q D YP QQ+LIH GKVLKD TTL +N+V+E+ F+VVML+K S
Sbjct: 76 EIMDVKTNIEDIQEKDNYPCRQQLLIHNGKVLKDETTLADNEVSEDGFLVVMLSKVNNRS 135
Query: 82 SGA 84
G
Sbjct: 136 MGG 138
>gi|158430391|pdb|2QSF|X Chain X, Crystal Structure Of The Rad4-Rad23 Complex
gi|158430393|pdb|2QSG|X Chain X, Crystal Structure Of Rad4-Rad23 Bound To A Uv-Damaged Dna
gi|158430397|pdb|2QSH|X Chain X, Crystal Structure Of Rad4-Rad23 Bound To A Mismatch Dna
Length = 171
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 24/137 (17%)
Query: 285 QQFQALRTMVQANPQILQPMLQELGKQNPHL---------------MRLIQEHQTDFLRL 329
+ +LR +V NP+ L P+L+ + + P L + + ++ D +
Sbjct: 33 EDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEG 92
Query: 330 INEPVEGGEGNVLGQLASA-MPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFF 381
++ VEG + V G+ A+A + Q V TPE+ +AI RL +GF+R LV++V+F
Sbjct: 93 ADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYF 152
Query: 382 ACNKNEELAANYLL-DH 397
AC+KNEE AAN L DH
Sbjct: 153 ACDKNEEAAANILFSDH 169
>gi|297811745|ref|XP_002873756.1| hypothetical protein ARALYDRAFT_326056 [Arabidopsis lyrata subsp.
lyrata]
gi|297319593|gb|EFH50015.1| hypothetical protein ARALYDRAFT_326056 [Arabidopsis lyrata subsp.
lyrata]
Length = 134
Score = 74.3 bits (181), Expect = 9e-11, Method: Composition-based stats.
Identities = 39/61 (63%), Positives = 46/61 (75%), Gaps = 5/61 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTLKGT FEIEVKP D KNIETV G+ YPA+QQ+LIH+GK L+D T+E
Sbjct: 1 MKIIVKTLKGTRFEIEVKPNDS-----KNIETVLGASEYPAAQQILIHKGKKLRDEATME 55
Query: 61 E 61
E
Sbjct: 56 E 56
>gi|397637202|gb|EJK72575.1| hypothetical protein THAOC_05883 [Thalassiosira oceanica]
Length = 504
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 74/172 (43%), Gaps = 58/172 (33%)
Query: 282 RNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE------ 335
RN QF +LR +VQ+NP LQ +L ++G+Q P L++ I +Q +FL ++NEPV
Sbjct: 307 RNHPQFDSLRRLVQSNPNALQQVLAQIGQQQPELLQAINANQQEFLAMMNEPVAEAPAGG 366
Query: 336 ----------------------------GGEGNVLGQLASAMP----------------- 350
G G+ G +A+
Sbjct: 367 GADAGGADAGHDGADDGRRRRAAPGHRAGHRGHAAGATRTALTDGRRGHGAGGMPPGMMG 426
Query: 351 -------QAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
Q + ++ EE A+ RL MGFDR + + AC+KNE LAAN L+
Sbjct: 427 GGGEGGPQVLRLSEEEMAAVNRLTEMGFDRTEAAQAYLACDKNEALAANLLM 478
>gi|46015810|pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b
Complexed With Ubiquitin-Interacting Motif Of
Proteasome Subunit S5a
Length = 95
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 57/82 (69%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSS 82
E K+ E +FVVVM+TK K S+
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVST 82
>gi|123495684|ref|XP_001326794.1| Ubiquitin family protein [Trichomonas vaginalis G3]
gi|121909714|gb|EAY14571.1| Ubiquitin family protein [Trichomonas vaginalis G3]
Length = 330
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 97/397 (24%), Positives = 154/397 (38%), Gaps = 74/397 (18%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V ++T+ G ++ V+P ++++K + + ++V P + LI+ K L D T+
Sbjct: 1 MEVSLRTISGVTYKQAVEPTTTIAELK--VLVSEKANVAPEGIK-LIYSAKFLDDSKTIA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSS---APPTSTQPTTTSQTPAP 117
E+ + +++ + SK A Q Q SS P P + AP
Sbjct: 58 ESNIQPGQAIIMHVQSSK------------NAKQPQKKSSEKRKSPKKESPIKVQEAAAP 105
Query: 118 TVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATV 177
AP Q E+ P P + AP P +A LV N A V
Sbjct: 106 --APTQPKEEATQKPEQPGHSMV-----APLPE----------LEAKHQLVDPPNFNALV 148
Query: 178 QQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPP 237
Q + +MG D ALRAA NP+RA E+L + +P + + N
Sbjct: 149 QTLTEMGFSEGD---AAHALRAAVYNPDRAAEFLLTNY-----IPEMPQLYDPNDLANEE 200
Query: 238 AQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQAN 297
+ + A TL FLR Q N
Sbjct: 201 EDYDDDDNSD---------------------EEDDEQASTLQFLRQLHQ----------N 229
Query: 298 PQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTP 357
P++L L++L NP + LI+ FL + + + L + T
Sbjct: 230 PELLPIYLKDLADNNPAVAPLIRNDPASFLVSLGVNPSEFDLSSLKHKSEFETLMEKFTE 289
Query: 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYL 394
EE++AI RLE +GFD V++VF AC+++E L + L
Sbjct: 290 EEQKAIHRLEKLGFDTTDVIQVFEACDRDENLTKSCL 326
>gi|380476277|emb|CCF44800.1| hypothetical protein CH063_14080, partial [Colletotrichum
higginsianum]
Length = 94
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 307 ELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMP---QAVTVTPEEREAI 363
+LG NP L +LI + FL+L+ E V+ +P QA+ VT EER+AI
Sbjct: 1 QLGAGNPQLAQLIANNPDQFLQLLGEEVDDD---------VPLPPGAQAIQVTEEERDAI 51
Query: 364 ERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
ERL +GFDR ++ +FAC+KNEELAAN+L
Sbjct: 52 ERLCRLGFDRDAAIQAYFACDKNEELAANFLF 83
>gi|159162808|pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b
Length = 85
Score = 73.2 bits (178), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 57/82 (69%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+
Sbjct: 4 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 61 ENKVAENSFVVVMLTKSKVSSS 82
E K+ E +FVVVM+TK K S+
Sbjct: 64 EYKIDEKNFVVVMVTKPKAVST 85
>gi|349604998|gb|AEQ00385.1| UV excision repair protein RAD23-like protein B-like protein,
partial [Equus caballus]
Length = 94
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 9/86 (10%)
Query: 319 IQEHQTDFLRLINEPVEGGEGNV---------LGQLASAMPQAVTVTPEEREAIERLEAM 369
I +HQ F++++NEPV+ G + + S + VTP+E+EAIERL+A+
Sbjct: 2 ISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKAL 61
Query: 370 GFDRALVLEVFFACNKNEELAANYLL 395
GF LV++ +FAC KNE LAAN+LL
Sbjct: 62 GFPEGLVIQAYFACEKNENLAANFLL 87
>gi|407042326|gb|EKE41271.1| RAD23 protein, putative [Entamoeba nuttalli P19]
Length = 317
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 101/407 (24%), Positives = 167/407 (41%), Gaps = 104/407 (25%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDK-VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTT 58
MK+ VKT++G E E++PE V ++K+ I QG D+ S LI++ ++LKD
Sbjct: 1 MKIIVKTIQGILNEYEIEPETTTVGELKEMINAKQGIDIQNIS---LIYKSRMLKDNAQN 57
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
L + E +V+++ KS V + V+ + + T+TQP TT+Q
Sbjct: 58 LGGLGINEGDSIVMVVKKSAVPPPKPAPVAQPETHSTEPIQQPTTTTTQPITTNQ----- 112
Query: 119 VAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQ 178
P+ PV D++ V E +
Sbjct: 113 ----------------------------PSIQPV-----DIFQSQQRQTVNVEPTEENIN 139
Query: 179 QILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPA 238
+++MG + R+ I+ALR + NN A ++L SG+ + + AGG P
Sbjct: 140 HLVEMG---FLRDNAIKALRKSQNNTAIAADFLISGVD----LDNIPDQPAGGYEEYP-- 190
Query: 239 QTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANP 298
Q+P G++ L Q + R P
Sbjct: 191 ----QEP------------------------------GSILNLTKDQFIELCREQ----P 212
Query: 299 QILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLG---------QLASAM 349
QI++ +Q + +NP +LI+ + +I + + V A A
Sbjct: 213 QIIESFIQHVESENPSAAQLIRNNPGMIYDIIKS--QTNDNRVPSGPQPTQPQPNHAPAQ 270
Query: 350 PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLD 396
PQ ++PE+ AI+RL +GF R+ L+ + AC+KNE+LAAN+LLD
Sbjct: 271 PQ---LSPEDNAAIDRLCGLGFGRSQCLQAYIACDKNEQLAANFLLD 314
>gi|355715047|gb|AES05207.1| RAD23-like protein A [Mustela putorius furo]
Length = 182
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 63/101 (62%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 63 KVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPP 103
++ E +FVVVM+TK+K S + A+P ++++S PP
Sbjct: 82 RIDEKNFVVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPP 122
>gi|408391366|gb|EKJ70745.1| hypothetical protein FPSE_09115 [Fusarium pseudograminearum CS3096]
Length = 242
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 94/217 (43%), Gaps = 36/217 (16%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV K LK F ++V+P + +S VK+ I +G + Q LI+ GK+LKD T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPSELISAVKEKISAEKG---WQPQLQKLIYSGKILKDDETVG 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ E FVV M+ K K + PA + + P T + A
Sbjct: 58 SYNIEEKGFVVCMVNKPKPTK---------PAESSAAPPATPAAPPTRTPAAPAAPAQSA 108
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
Q+ + P P A A + P S L GS + +
Sbjct: 109 SQQAAVPATPTPQRSADAGSEEP---------------------SGLAMGSQRTEAIANM 147
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 217
MG ++R + A+RAA+NNP+RAVEYL +GIP+
Sbjct: 148 EAMG---FERSQIEAAMRAAFNNPDRAVEYLLNGIPD 181
>gi|258644511|dbj|BAI39766.1| osRAD23-like [Oryza sativa Indica Group]
gi|258644734|dbj|BAI39979.1| osRAD23-like [Oryza sativa Indica Group]
Length = 88
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 43/60 (71%), Gaps = 6/60 (10%)
Query: 183 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 242
MGGG+WDR+TV+ A RAAYNNPERA+EYLY+G+PEQ A A A QA PA QA
Sbjct: 1 MGGGAWDRDTVMSARRAAYNNPERAMEYLYTGVPEQ------AEAPAAVQALPVPAAVQA 54
>gi|34015239|gb|AAQ56432.1| putative DNA repairing protein [Oryza sativa Japonica Group]
gi|35210523|dbj|BAC92639.1| unknown protein [Oryza sativa Japonica Group]
gi|35215224|dbj|BAC92575.1| unknown protein [Oryza sativa Japonica Group]
Length = 88
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 43/60 (71%), Gaps = 6/60 (10%)
Query: 183 MGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQA 242
MGGG+WDR+TV+ A RAAYNNPERA+EYLY+G+PEQ A A A QA PA QA
Sbjct: 1 MGGGAWDRDTVMSARRAAYNNPERAMEYLYTGVPEQ------AEAPAAVQALPIPAAVQA 54
>gi|259155371|ref|NP_001158747.1| UV excision repair protein RAD23 homolog B [Salmo salar]
gi|223646842|gb|ACN10179.1| UV excision repair protein RAD23 homolog B [Salmo salar]
gi|223672703|gb|ACN12533.1| UV excision repair protein RAD23 homolog B [Salmo salar]
Length = 131
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +KTL+ +I++ P+ V +K+ IE +G D +P S Q LI+ GK+L+D T ++
Sbjct: 1 MQITLKTLQQQTIQIDIDPDQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQ 94
+ K+ E +FVVVM++K+K S++ AST S+ NQ
Sbjct: 61 DYKIDEKNFVVVMVSKAK-STTAASTPSSEAPNQ 93
>gi|238567698|ref|XP_002386292.1| hypothetical protein MPER_15516 [Moniliophthora perniciosa FA553]
gi|215437819|gb|EEB87222.1| hypothetical protein MPER_15516 [Moniliophthora perniciosa FA553]
Length = 161
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 38/197 (19%)
Query: 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74
++ +P D V +K IE G +P + Q +I+ GK+L D T+E + E F+V+M+
Sbjct: 1 VDAEPSDTVGAIKSKIEAAHG---HPVASQKVIYSGKILADDKTIESCGIKEKDFLVLMV 57
Query: 75 TKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAA 134
+K K P A T+S+ P + + + T +
Sbjct: 58 SKPK------------PTPAATTSSTPAPATPVAAPPTSESSSTTTTAPPPAAAPVSSTE 105
Query: 135 PAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVI 194
PA A +G +S ++GS L+ T+ +++MG + ++ V+
Sbjct: 106 PAQQRA-------------------FGDTSS-FLSGSALQDTINNMVEMG---FPKDQVL 142
Query: 195 RALRAAYNNPERAVEYL 211
RALRA++NNP+RAVEYL
Sbjct: 143 RALRASFNNPDRAVEYL 159
>gi|357501513|ref|XP_003621045.1| RAD23-like protein [Medicago truncatula]
gi|355496060|gb|AES77263.1| RAD23-like protein [Medicago truncatula]
Length = 142
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 41/53 (77%), Gaps = 2/53 (3%)
Query: 160 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 212
YG+A SNL+AGS LE T+QQI D+G R+ VIRAL AAYNNPER VEYLY
Sbjct: 62 YGKAESNLIAGSTLEPTIQQI-DIGR-KLVRDIVIRALSAAYNNPERTVEYLY 112
>gi|401425983|ref|XP_003877476.1| UV excision repair RAD23-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493721|emb|CBZ29011.1| UV excision repair RAD23-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 429
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 103/225 (45%), Gaps = 26/225 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVKK +E D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKKLLE-----DEYEPASLRLCFNGAVLEDSKMLA 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP---------TTT 111
+ + +N +V+ K K+ A + +A SSAP +S P TT
Sbjct: 56 DAGIKDNDSLVLAGRKRKIPKPPAPQSAEPSKTEAAPESSAPASSATPPPAMSTPVLATT 115
Query: 112 SQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGS 171
S + T P + A AP + PA PA ++SV++ YG A NL
Sbjct: 116 SPATSATPVDPPAPAVPTAATAPAAPVASTTPAAPAVPAAPAASVTNTYG-VAPNL---- 170
Query: 172 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 216
+ ++ M G DR + ALRAA+ N ERAVEYL+ GIP
Sbjct: 171 -----IDEVASM--GFEDRNQIALALRAAFMNVERAVEYLFEGIP 208
>gi|195609762|gb|ACG26711.1| hypothetical protein [Zea mays]
Length = 38
Score = 67.0 bits (162), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 369 MGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
MGF+R LVLEVFFACNK+EEL ANYLLDH HEF++
Sbjct: 1 MGFNRELVLEVFFACNKDEELTANYLLDHGHEFDE 35
>gi|326427437|gb|EGD73007.1| hypothetical protein PTSG_04716 [Salpingoeca sp. ATCC 50818]
Length = 214
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 89/216 (41%), Gaps = 47/216 (21%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV VK++K FE+E V +K+ I + SD Q LI G++LKD LE
Sbjct: 1 MKVTVKSMKAGTFEVEADISKPVRLIKEAIYAEKKSDDLHPDAQRLIFSGRLLKDDDVLE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
EN F+VVM G ++ PA + T+S+ T
Sbjct: 61 SLNFKENDFLVVM--------GGKRPAASKPAADKKDTASSKSEET-------------- 98
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
PA + P PA S+ + G AAS E ++ +
Sbjct: 99 --------------PASSSTTEPKPASTTTSSSTPAAPSSGPAAS--------EESLNTL 136
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 216
MG +DR RAL AA+ N ERAVEYL +GIP
Sbjct: 137 TAMG---FDRAQAERALSAAFGNIERAVEYLQNGIP 169
>gi|343428884|emb|CBQ72429.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Sporisorium reilianum SRZ2]
Length = 434
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 10/73 (13%)
Query: 167 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVA- 225
+ G LE+ +Q +++MG ++R+ V RA+RAA+NNP+RAVEYL +GIPE A PP A
Sbjct: 158 FLTGGALESAMQSMMEMG---FERDQVQRAMRAAFNNPDRAVEYLMTGIPEHLANPPAAP 214
Query: 226 ------RASAGGQ 232
ASAG Q
Sbjct: 215 QPSSTGAASAGEQ 227
>gi|328865495|gb|EGG13881.1| repC-binding protein A [Dictyostelium fasciculatum]
Length = 204
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 37/214 (17%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K + + +V ++ V+++K + +Q + AS Q LI+ GKVL++ L
Sbjct: 1 MKITIKNINKEVYTFDVTGDESVTELK---QLIQNKHSHQASWQTLIYGGKVLENDNKLS 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVA 120
+ EN F+V M+ K K +T ++ P + QP TT
Sbjct: 58 TYNITENGFLVCMVKKPK----------------EETVATTAP-AVQPATT--------- 91
Query: 121 PPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLEATVQQI 180
P + + PA P PAP P +S + G +S + G EA + +
Sbjct: 92 -----PVAPTSAPSTTPASTSTPTNTPAPTPSPASSTSPSGGNSS-FIVGPEYEAAITNL 145
Query: 181 LDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 214
++M G +RE VIRALRA++NN ERA + L SG
Sbjct: 146 MEMSGA--NREMVIRALRASFNNAERAADILLSG 177
>gi|298707279|emb|CBJ25906.1| UV excision repair protein RAD23B homolog [Ectocarpus siliculosus]
Length = 466
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 42/158 (26%)
Query: 177 VQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNP 236
V+Q+ +MG + + V ALRAA NP+ AVE+L +GIP+ +A G
Sbjct: 119 VRQLTEMG---FPEDQVTAALRAAMGNPDVAVEFLMTGIPDNIQAAAAPAQAAAAPTG-- 173
Query: 237 PAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQA 296
TL+ R QF L+ +VQ
Sbjct: 174 -------------------------------------AMETLEDFRGHPQFNELKRLVQR 196
Query: 297 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 334
+P L +LQ +G+Q+P+L+ I E+Q DF+ L+NEP+
Sbjct: 197 DPTQLSSILQMIGRQSPNLLARIHENQGDFIALMNEPI 234
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 353 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 398
+ ++ EE A+ RL +GF+R + + AC+KNE LAAN+LL+ M
Sbjct: 342 IRLSEEEGAAVARLTELGFERTDAAQAYLACDKNEALAANFLLNDM 387
>gi|351700121|gb|EHB03040.1| UV excision repair protein RAD23-like protein B [Heterocephalus
glaber]
Length = 140
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +KTL+ F+I++ PE+ V + + IE+ +G D +P + Q LI+ GK+L D T++E
Sbjct: 55 VTLKTLQQQTFKIDIDPEETVKALNEKIESEKGKDAFPVAGQKLIYAGKILND-DTVKEY 113
Query: 63 KVAENSFVVVMLTKSKVSSS 82
K+ E +FVV M+TK K ++
Sbjct: 114 KIDEKNFVVFMVTKPKAVTT 133
>gi|159162855|pdb|1PVE|A Chain A, Solution Structure Of Xpc Binding Domain Of Hhr23b
Length = 72
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 45/58 (77%)
Query: 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE 335
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+
Sbjct: 6 LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQ 63
>gi|323451497|gb|EGB07374.1| hypothetical protein AURANDRAFT_53989 [Aureococcus
anophagefferens]
Length = 371
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V VKTL+G F++E PE + VK IE Q A+ LIH GKVLKD TL
Sbjct: 1 MLVAVKTLEGRLFKVEAAPESTIGAVKGLIEASQPE--LKAAAMKLIHSGKVLKDEDTLA 58
Query: 61 ENKVAENSFVVVMLTKSK 78
+ V E SF+V M+TK K
Sbjct: 59 DKGVTEQSFLVCMVTKPK 76
>gi|402580657|gb|EJW74606.1| hypothetical protein WUBG_14486, partial [Wuchereria bancrofti]
Length = 80
Score = 63.2 bits (152), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/49 (59%), Positives = 38/49 (77%)
Query: 352 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400
A+ VT ER+AI RL++MGF LV+E +FAC+KNE+LAANY+L M E
Sbjct: 30 AIHVTEAERDAINRLKSMGFPEQLVIEAYFACDKNEDLAANYILARMDE 78
>gi|393245007|gb|EJD52518.1| UV excision repair protein Rad23 [Auricularia delicata TFB-10046
SS5]
Length = 375
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ VKTL+ F+I+ +P D V+D+K I+ Q +P Q LI+ GKVL D T+E
Sbjct: 1 MKITVKTLQQKQFQIDAEPSDTVADLKSKIKDTQN---HPVEHQKLIYSGKVLADDKTIE 57
Query: 61 ENKVAENSFVVVMLT 75
++ E F+V+M++
Sbjct: 58 SCQIKEKDFLVLMVS 72
>gi|109126538|ref|XP_001116344.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Macaca
mulatta]
Length = 53
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 37/43 (86%)
Query: 353 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL
Sbjct: 4 IQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLL 46
>gi|93279429|pdb|2F4M|B Chain B, The Mouse Pngase-Hr23 Complex Reveals A Complete
Remodulation Of The Protein-Protein Interface Compared
To Its Yeast Orthologs
gi|93279431|pdb|2F4O|B Chain B, The Mouse Pngase-Hr23 Complex Reveals A Complete
Remodulation Of The Protein-Protein Interface Compared
To Its Yeast Orthologs
Length = 61
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 44/57 (77%)
Query: 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 334
L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV
Sbjct: 4 LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 60
>gi|212535726|ref|XP_002148019.1| UV excision repair protein (RadW), putative [Talaromyces
marneffei ATCC 18224]
gi|210070418|gb|EEA24508.1| UV excision repair protein (RadW), putative [Talaromyces
marneffei ATCC 18224]
Length = 372
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ + LK F IE +P + V VK+ I +G + ASQQ LI+ GK+L+D T+E
Sbjct: 1 MKLTFRDLKQQKFTIEAEPSETVGQVKEKIAQEKG---WEASQQKLIYSGKILQDANTIE 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSG 83
+ E F+V M++K K ++ G
Sbjct: 58 SYNIEEKGFIVCMVSKPKPAAGG 80
>gi|348690401|gb|EGZ30215.1| hypothetical protein PHYSODRAFT_553293 [Phytophthora sojae]
Length = 450
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 277 TLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 334
+L+ LRN QF ALR +VQ+NP L +LQ++G Q+P L+RLI ++Q F++++NEP+
Sbjct: 227 SLEALRNHPQFDALRQLVQSNPAALPAVLQQIGAQSPELLRLIHQNQDRFVQMLNEPI 284
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 32/43 (74%)
Query: 353 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395
+ +T EE A++RL MGF+R V++ + AC+KNE LAAN+L+
Sbjct: 387 IMLTEEEAAAVDRLCEMGFERTDVIQAYLACDKNEALAANFLM 429
>gi|407416607|gb|EKF37719.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi
marinkellei]
Length = 300
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 32/182 (17%)
Query: 196 ALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQTQAQQPAAPAPTSGPN 255
ALRAAY NP+RAVE+L +GIP Q N PA P+ +S
Sbjct: 111 ALRAAYMNPDRAVEFLCTGIPSDVM-----------QRMNEPA-------INPSASSERM 152
Query: 256 ANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHL 315
++ D + ++ + + L QF +R++VQANP+ L ++Q+L +P +
Sbjct: 153 SSLTDRLTSHMRQ--DDSDSALYNALMQIPQFGEIRSIVQANPESLPTVVQQLRIHHPEV 210
Query: 316 MRLIQEHQTDFLRLINEPVE-------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEA 368
+ LIQ+ FLR++ P + GG NV S + + EER AI+RL
Sbjct: 211 IGLIQQDLEGFLRIMGNPGQTEFTTSAGGGDNVPHDSVS-----IPLREEERVAIQRLVE 265
Query: 369 MG 370
+G
Sbjct: 266 LG 267
>gi|311771876|pdb|2WYQ|A Chain A, The Crystal Structure Of The Ubiquitin-Like (Ubl) Domain
Of Hhr23a (Human Homologue A Of Rad23)
Length = 85
Score = 61.6 bits (148), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 51/76 (67%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D + +
Sbjct: 8 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 67
Query: 63 KVAENSFVVVMLTKSK 78
++ E +FVVVM+TK+K
Sbjct: 68 RIDEKNFVVVMVTKTK 83
>gi|282601359|ref|ZP_05981478.2| ubiquitin family protein [Subdoligranulum variabile DSM 15176]
gi|282569316|gb|EFB74851.1| ubiquitin family [Subdoligranulum variabile DSM 15176]
Length = 721
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+VFVK L G H +EV+P D++ DVK+ I+ +G P +Q LI GK+L+D TL+
Sbjct: 76 MQVFVKRLAGKHITLEVEPTDRIEDVKQKIQDKEG---IPPERQRLIFAGKILEDGNTLQ 132
Query: 61 ENKVAENSFVVVM 73
+ + ++S + ++
Sbjct: 133 DYSIRKDSTIYLV 145
>gi|37927447|pdb|1P98|A Chain A, High-Resolution Nmr Structure Of The Ubl-Domain Of
Hhr23a
gi|37927452|pdb|1P9D|U Chain U, High-Resolution Structure Of The Complex Of Hhr23a
Ubiquitin-Like Domain And The C-Terminal Ubiquitin-
Interacting Motif Of Proteasome Subunit S5a
Length = 78
Score = 60.5 bits (145), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 50/76 (65%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KTL+ F+I ++P++ V +K+ IE +G D +P + Q LI+ GK+L D +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 ENKVAENSFVVVMLTK 76
+ ++ E +FVVVM+TK
Sbjct: 63 DYRIDEKNFVVVMVTK 78
>gi|389583319|dbj|GAB66054.1| DNA repair protein RAD23, partial [Plasmodium cynomolgi strain B]
Length = 117
Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 40/52 (76%), Gaps = 3/52 (5%)
Query: 353 VTVTP---EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 401
+ +TP E E+I++LE++GF + L LE F AC+KNEE+AANYL ++M+++
Sbjct: 30 IPITPLNENEMESIKKLESLGFPKHLALEAFIACDKNEEMAANYLFENMNDY 81
>gi|123398957|ref|XP_001301380.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123497770|ref|XP_001327247.1| polyubiquitin [Trichomonas vaginalis G3]
gi|154420157|ref|XP_001583094.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121882554|gb|EAX88450.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121910174|gb|EAY15024.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121917333|gb|EAY22108.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 132
Score = 58.9 bits (141), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
>gi|443716613|gb|ELU08047.1| hypothetical protein CAPTEDRAFT_227723 [Capitella teleta]
Length = 335
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 19/122 (15%)
Query: 97 TTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSV 156
T + P QP +PAP A +S+ S +PA P +
Sbjct: 41 TPTETPAAVDQPM----SPAPAAATTESMETS-----------SPATEVVTEATPADAPP 85
Query: 157 SDVYGQAA-SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 215
+ V ++A S LV G + E TVQ+++ MG + R+ V+RALRA++NNP+RAVEYL SGI
Sbjct: 86 AAVQPESAESTLVTGESYEQTVQEMMSMG---FARDMVVRALRASFNNPDRAVEYLLSGI 142
Query: 216 PE 217
P+
Sbjct: 143 PD 144
>gi|12084372|pdb|1F4I|A Chain A, Solution Structure Of The Hhr23a Uba(2) Mutant P333e,
Deficient In Binding The Hiv-1 Accessory Protein Vpr
Length = 45
Score = 58.9 bits (141), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 37/46 (80%), Gaps = 2/46 (4%)
Query: 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+E+EAIERL+A+GF+ +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 1 QEKEAIERLKALGFEESLVIQAYFACEKNENLAANFLLS--QNFDD 44
>gi|76155958|gb|AAX27211.2| SJCHGC03112 protein [Schistosoma japonicum]
Length = 155
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 35/162 (21%)
Query: 53 LKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS 112
++D +L++ KV ++ FVVVM +VS P + A+ S TS T
Sbjct: 1 MEDSKSLKDYKVTDSGFVVVM------------SVSKLPRDIAKEAS----TSVLSNLTD 44
Query: 113 QTPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSN 172
E P P+ +P + A P S+ ++ S+LV G +
Sbjct: 45 --------------EGKPMPSEKSPNVDVIESVNVATTP--STATNTLSFLKSSLVLGED 88
Query: 173 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 214
E+ VQ+++ MG +++ VI+A+RA +NNP+RA EYL SG
Sbjct: 89 FESVVQELVSMG---FEKPLVIQAMRAGFNNPDRAFEYLSSG 127
>gi|123454697|ref|XP_001315100.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479152|ref|XP_001322735.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479160|ref|XP_001322739.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121897766|gb|EAY02877.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905587|gb|EAY10512.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905591|gb|EAY10516.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 77
Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
>gi|432091539|gb|ELK24564.1| UV excision repair protein RAD23 like protein B, partial [Myotis
davidii]
Length = 414
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 23 VSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78
V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 56
>gi|154416733|ref|XP_001581388.1| ubiquitin [Trichomonas vaginalis G3]
gi|121915615|gb|EAY20402.1| ubiquitin, putative [Trichomonas vaginalis G3]
Length = 166
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 35 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 91
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 92 DYSIQKDSTLHLVL 105
>gi|154416813|ref|XP_001581428.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121915655|gb|EAY20442.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 147
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFV 70
+ + ++S +
Sbjct: 134 DYSIQKDSIL 143
>gi|123390686|ref|XP_001299928.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121880877|gb|EAX86998.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 186
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 110 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 166
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 167 DYSIQKDSTLHLVL 180
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
VKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL++ +
Sbjct: 38 VKTLTGKHITLEVEPTDRIEDVKTKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQDYSI 94
Query: 65 AENSFVVVML 74
++S + ++L
Sbjct: 95 QKDSTLHLVL 104
>gi|123390682|ref|XP_001299927.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121880876|gb|EAX86997.1| polyubiquitin [Trichomonas vaginalis G3]
Length = 153
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
>gi|429327043|gb|AFZ78850.1| polyubiquitin [Coptotermes formosanus]
Length = 230
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 209
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 210 DYSIQKDSTLHLVL 223
>gi|123471218|ref|XP_001318810.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479158|ref|XP_001322738.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123501326|ref|XP_001328048.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121901578|gb|EAY06587.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905590|gb|EAY10515.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121910986|gb|EAY15825.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 153
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
>gi|123445177|ref|XP_001311351.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121893157|gb|EAX98421.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 229
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 209
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 210 DYSIQKDSTLHLVL 223
>gi|1101011|gb|AAC46935.1| polyubiquitin, partial [Trichomonas vaginalis]
Length = 770
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 10 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 66
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 67 DYSIQKDSTLHLVL 80
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 86 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 142
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 143 DYSIQKDSTLHLVL 156
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 162 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 218
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 219 DYSIQKDSTLHLVL 232
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 238 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 294
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 295 DYSIQKDSTLHLVL 308
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 314 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 370
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 371 DYSIQKDSTLHLVL 384
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 390 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 446
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 447 DYSIQKDSTLHLVL 460
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 466 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 522
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 523 DYSIQKDSTLHLVL 536
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 542 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 598
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 599 DYSIQKDSTLHLVL 612
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 618 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 674
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 675 DYSIQKDSTLHLVL 688
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I+ +G P QQ LI GK L+D TL+
Sbjct: 694 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQVKEG---IPPDQQGLIFAGKQLEDGKTLQ 750
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 751 DYSIQKDSTLHLVL 764
>gi|159162478|pdb|1IFY|A Chain A, Solution Structure Of The Internal Uba Domain Of Hhr23a
Length = 49
Score = 56.2 bits (134), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 3/50 (6%)
Query: 167 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 216
LV GS E + +I+ MG ++RE V+ ALRA+YNNP RAVEYL +GIP
Sbjct: 2 LVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP 48
>gi|9955429|dbj|BAB12223.1| RAD23 homolog [Hydractinia echinata]
Length = 101
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 273 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 332
+ L FLRN QFQ +R VQ +P+ L +LQE+G+ NP L++LI ++Q F+ L+NE
Sbjct: 1 SAVADLSFLRNLPQFQLMRDQVQEHPESLPQLLQEIGQSNPQLLQLISQNQEAFIALLNE 60
>gi|341889007|gb|EGT44942.1| CBN-RAD-23 protein [Caenorhabditis brenneri]
Length = 328
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
V +TL +F +E+ + +++VKK + T +G D P Q+ LI+ GK+L D T + +
Sbjct: 5 VAFRTLTQINFSLELNEDQTIAEVKKLVATEKGDDYAPELQK-LIYNGKILDDATKVADV 63
Query: 63 KVAENSFVVVMLTKSKVSSS 82
+ FVVVMLTK K + +
Sbjct: 64 GFDSSKFVVVMLTKKKAAET 83
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 89/227 (39%), Gaps = 72/227 (31%)
Query: 174 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQA 233
E TV I MG +DRE + ALRAA+ NP+RAVE+L +GIP+ V A G
Sbjct: 127 EETVAAITGMG---YDREQAVAALRAAFWNPDRAVEFLLNGIPDD--VVDQEPALGLGLG 181
Query: 234 GNPPAQTQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTM 293
+PP + ++ L+ L N Q +R+M
Sbjct: 182 ADPPGENVEEEVNE-----------------------------DLNMLANMPQLAEIRSM 212
Query: 294 VQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLIN---------------------- 331
+Q NP++L +LQ+L NP L++ IQ +Q F+ ++N
Sbjct: 213 IQQNPEMLAAVLQQLAAVNPRLVQTIQNNQQAFMDILNGAGQNAPQGGGGAGAGAAAGER 272
Query: 332 ---------EPVEGGEGNVLGQLASAMPQAVTV------TPEEREAI 363
P E + + +A P+A+ V E AI
Sbjct: 273 GPRRHVIHLSPEEAAAIERIKAIVNA-PEAMVVEAYFACDKNEEAAI 318
>gi|7245807|pdb|1DV0|A Chain A, Refined Nmr Solution Structure Of The C-Terminal Uba
Domain Of The Human Homologue Of Rad23a (Hhr23a)
Length = 47
Score = 55.5 bits (132), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 36/46 (78%), Gaps = 2/46 (4%)
Query: 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL F+D
Sbjct: 3 QEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS--QNFDD 46
>gi|343470186|emb|CCD17040.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 230
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 41/210 (19%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +++L G E EV P+ KV D+K+ +E + Y + + VL+D+ T+
Sbjct: 56 MKIILRSLTGKEHEQEVTPDTKVQDIKRVLE-----EEYAPESLRICYNNSVLEDLETMG 110
Query: 61 ENKVAENSFVVVMLTKSK-----VSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTP 115
V + S V+V + K + V+ + T+S A Q Q + P + +
Sbjct: 111 NLGVGDKS-VLVFVGKKRTIQKLVAKAIEDTLSLASVGQTQEQN----VKEAPHVSEGSE 165
Query: 116 APTVAPPQSVPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDVYGQAASNLVAGSNLE- 174
APT A S P + P+A APAP + S++ A ++
Sbjct: 166 APTTA---SAPTAGEQPSAETAAPAP--------------------RTGSSVAATQGVDP 202
Query: 175 ATVQQILDMGGGSWDRETVIRALRAAYNNP 204
A + I MG DR+ + ALRAAY NP
Sbjct: 203 ALIDSIAAMGFE--DRDQIALALRAAYMNP 230
>gi|123454695|ref|XP_001315099.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121897765|gb|EAY02876.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 153
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I Q + P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKI---QDKEDIPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G H +EV+P D++ DVK I Q + P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKI---QDKEDIPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 ENKVAENSFVVVML 74
+ + ++S + ++L
Sbjct: 134 DYSIQKDSTLHLVL 147
>gi|355715049|gb|AES05208.1| RAD23-like protein A [Mustela putorius furo]
Length = 102
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 23/110 (20%)
Query: 274 GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP 333
G L+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP
Sbjct: 1 GENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 60
Query: 334 VEGGEGNVLGQLAS-------------AMPQA--VTVTPEEREAIERLEA 368
G+LA PQ + VTP+E+EAIER+
Sbjct: 61 P--------GELADISDVEGEGGAIGEEAPQMNYIQVTPQEKEAIERVRG 102
>gi|210076049|ref|XP_002143115.1| YALI0F18403p [Yarrowia lipolytica]
gi|199424967|emb|CAR65204.1| YALI0F18403p [Yarrowia lipolytica CLIB122]
Length = 77
Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +KTL G E++V+PED++S +K+ IE ++G P +QQ L+ GK L+D T+
Sbjct: 1 MKIKIKTLIGKEIEMDVEPEDQISVLKEKIEELEG---IPPAQQRLVFTGKQLQDEKTIA 57
Query: 61 ENKV 64
ENK+
Sbjct: 58 ENKI 61
>gi|294886021|ref|XP_002771518.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
gi|239875222|gb|EER03334.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
Length = 334
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K G+ FE PE + DVKKN G PA QQ LI++G++LKD T+
Sbjct: 3 INLIFKVSGGSSFEANFDPETTIGDVKKNCVKTSG---VPAEQQRLIYKGRILKDTDTIN 59
Query: 61 ENKV 64
++K+
Sbjct: 60 QHKI 63
>gi|291407421|ref|XP_002719934.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryctolagus cuniculus]
Length = 408
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++ +K F I++ P V +K+ IE QG D +P + Q L++ G+VL D L
Sbjct: 1 MRLTLKAWPQLTFHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLR 60
Query: 61 ENKVAENSFVVVMLTK 76
+ ++ E+ V V++ +
Sbjct: 61 DCQIHEHHAVTVLVAR 76
>gi|443893900|dbj|GAC71356.1| small Nuclear ribonucleoprotein splicing factor [Pseudozyma
antarctica T-34]
Length = 176
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 285 QQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQ 344
+ F + +VQ NP LQP++Q + + NP L + L L+ G +
Sbjct: 64 KDFLVVMQLVQQNPAALQPLVQAIAQSNPQLAEAMNHDPQGVLSLLAGGAGGAGEEM--- 120
Query: 345 LASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 403
+P ++ E+R +E++ AMG +E FF C KN E+A Y ++ +F+D
Sbjct: 121 ---ELPTLAELSDEDRAGVEQIVAMGIPEDKAIESFFMCGKNVEMAVQYYFENPQDFDD 176
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +K+L G +F ++ + D + +K+ I+ QG + Q +I GK+L D T+
Sbjct: 1 MKLLIKSLAGGNFHLDAELSDTIGAIKQKIQAEQG---HKPEWQKIIFSGKILTDDKTVA 57
Query: 61 ENKVAENSFVVVM 73
+ + E F+VVM
Sbjct: 58 DCNIKEKDFLVVM 70
>gi|294901159|ref|XP_002777264.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
gi|239884795|gb|EER09080.1| ubiquitin domain-containing protein DSK2, putative [Perkinsus
marinus ATCC 50983]
Length = 334
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + K G+ FE PE + DVKKN G PA QQ LI++G++LKD T+
Sbjct: 3 INLIFKVSGGSSFEASFDPETTIGDVKKNCVKTSG---VPAEQQRLIYKGRILKDTDTIN 59
Query: 61 ENKV 64
++K+
Sbjct: 60 QHKI 63
>gi|347964389|ref|XP_311268.5| AGAP000733-PA [Anopheles gambiae str. PEST]
gi|333467508|gb|EAA06820.6| AGAP000733-PA [Anopheles gambiae str. PEST]
Length = 390
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
MK+ +KTLK F +EV E D V +K+ + G YP +Q LI+ GK+++D L
Sbjct: 1 MKITLKTLKQQTFFVEVDVEQDTVRTLKEKLHAESGL-AYPVDRQRLIYLGKIMEDDHLL 59
Query: 60 EENKVAENSFVVVMLTK---------SKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTT 110
+ K+ + F+VVM K K S G A + + T ++++P+T
Sbjct: 60 SQYKLDDKKFIVVMSKKPPADEPAPEQKESGDGKPADKDTAAGRVEGTGEPATSASKPST 119
>gi|254568464|ref|XP_002491342.1| hypothetical protein [Komagataella pastoris GS115]
gi|238031139|emb|CAY69062.1| hypothetical protein PAS_chr2-1_0892 [Komagataella pastoris GS115]
Length = 383
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
++VF+K +E+ V P V + K I V SD+ PA +Q LI+ G+ LKD TL
Sbjct: 5 IQVFIKASGNQEYELTVDPSITVEEFKGKIAEV--SDI-PADRQRLIYSGRALKDADTLN 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTST 106
KV S + L KS + G S S A AN + +TS+ +T
Sbjct: 62 FYKV--QSGHTIHLVKSAPKNDGGS-ASVANANNSTSTSTGAANNT 104
>gi|55669980|pdb|1TP4|A Chain A, Solution Structure Of The Xpc Binding Domain Of Hhr23a
Protein
Length = 97
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 44/61 (72%)
Query: 273 AGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 332
AG L+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NE
Sbjct: 7 AGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNE 66
Query: 333 P 333
P
Sbjct: 67 P 67
>gi|255080554|ref|XP_002503857.1| predicted protein [Micromonas sp. RCC299]
gi|226519124|gb|ACO65115.1| predicted protein [Micromonas sp. RCC299]
Length = 374
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV KTL FE + + + DV+ + Q PA + +LIH+GKVL D TL
Sbjct: 1 MKVAFKTLTNQKFEEDFADDASIGDVRAKLSETQK---IPAPEMVLIHKGKVLTDDATLA 57
Query: 61 ENKVAENSFVVVM 73
V E SF+V+M
Sbjct: 58 AAGVTEASFIVMM 70
>gi|390367531|ref|XP_783007.3| PREDICTED: ubiquilin-1-like [Strongylocentrotus purpuratus]
Length = 607
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V VKT K IE+ P+ + ++K I + V Q LI GK+LKD TL+
Sbjct: 16 ISVVVKTPKDKE-TIEINPDSTIKELKDEISKKFSTTV---EQLCLIFAGKILKDNDTLK 71
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVS----AAPAN 93
+N + +N VV ++ +SK +G ST + A+PAN
Sbjct: 72 QNNIKDN-MVVHLVIRSKKDQAGTSTATTSSPASPAN 107
>gi|328352143|emb|CCA38542.1| mitochondrial intermediate peptidase [Komagataella pastoris CBS
7435]
Length = 1191
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 13/154 (8%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
++VF+K +E+ V P V + K I V SD+ PA +Q LI+ G+ LKD TL
Sbjct: 813 IQVFIKASGNQEYELTVDPSITVEEFKGKIAEV--SDI-PADRQRLIYSGRALKDADTLN 869
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSS--APPTSTQPTTTSQ----- 113
KV + L KS + G S S A AN + +TS+ A TS+ P+ +
Sbjct: 870 FYKVQSGH--TIHLVKSAPKNDGGS-ASVANANNSTSTSTGAANNTSSAPSNIAAGQGAF 926
Query: 114 TPAPTVAPPQSVPESAPPPAAPAPAPAPAPAPAP 147
P + + P P+A P P P
Sbjct: 927 NPLAGLTGARYAGMDVPMPSASMFGPDGGMGPMP 960
>gi|146094144|ref|XP_001467183.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
gi|134071547|emb|CAM70236.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
Length = 429
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVK+ +E D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSRMLA 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP 108
+ V +N +V+ K K+ A + P +A SSAP +S P
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAEPPKTEAAPESSAPASSATP 103
>gi|448524417|ref|XP_003868982.1| ubiquitin-like polyubiquitin-binding protein [Candida orthopsilosis
Co 90-125]
gi|380353322|emb|CCG26078.1| ubiquitin-like polyubiquitin-binding protein [Candida
orthopsilosis]
Length = 359
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V +K+ +EI K+S++K E + PAS Q LI+ GKVLKD T E
Sbjct: 4 ITVTIKSSGDKKYEITFNSSIKISELK---ELIAEKSSIPASSQRLIYSGKVLKDTETAE 60
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTS 105
K+ +NS + ++ + + + A++ S+ AQT SS P++
Sbjct: 61 SYKI-QNSHTIHLVKSANAAPTPATSESSTTQTAAQTPSSNIPSN 104
>gi|398019764|ref|XP_003863046.1| UV excision repair RAD23-like protein [Leishmania donovani]
gi|322501277|emb|CBZ36356.1| UV excision repair RAD23-like protein [Leishmania donovani]
Length = 429
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV +KT+ G E++V+ + DVK+ +E D Y + L G VL+D L
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSRMLA 55
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQP 108
+ V +N +V+ K K+ A + P +A SSAP +S P
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAEPPKTEAAPESSAPASSATP 103
>gi|428168829|gb|EKX37769.1| high mobility group box fusion protein [Guillardia theta CCMP2712]
Length = 187
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M++FVKTL G +EV+ D + VK I+ +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDMVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAP 102
+ + + S + ++L + + + G P + +SSAP
Sbjct: 58 DYNIQKESTLHLVL-RLRGGAEGREKRQTKPVEKFTISSSAP 98
>gi|222064069|emb|CAQ86697.1| putative ubiquitin family protein (UBA/TS-N domain containing
protein) [Histomonas meleagridis]
Length = 257
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 64/142 (45%), Gaps = 13/142 (9%)
Query: 98 TSSAPPTSTQPT--TTSQTPAPTVAPPQS-----VPESAPPPAAPAPAPAPAPAPAPAPA 150
TS + T+PT T + P P A P P+ PP PAP PAP
Sbjct: 7 TSGSKEFGTRPTQNTPEEAPKPQEALPAHEEPAPKPQEEAPPVHEEPAPKQQEDPAPQVQ 66
Query: 151 PVSSSVSDVYGQAASNLVAGSN---LEATVQQILDMGGGSWDRETVIRALRAAYNNPERA 207
+ ++S Q ++ +GS+ V QI+DMG D E +ALR +NN RA
Sbjct: 67 QPTPTISVTQPQHQTSHTSGSDALSFSDLVDQIVDMGFSKADAE---KALRKNHNNVTRA 123
Query: 208 VEYLYSGIPEQTAVPPVARASA 229
+EYL SG + + + V + S
Sbjct: 124 IEYLLSGATDDSELSFVRQNSG 145
>gi|255074919|ref|XP_002501134.1| predicted protein [Micromonas sp. RCC299]
gi|226516397|gb|ACO62392.1| predicted protein [Micromonas sp. RCC299]
Length = 308
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEEN 62
+ VK G+ + V+ V ++K +E +D P++QQ LI++G VLKD TLE
Sbjct: 6 IHVKATSGSKITVSVELSTTVGELKTTLEAADKADT-PSAQQRLIYKGHVLKDEKTLESY 64
Query: 63 KVAENSFV 70
V E+ +
Sbjct: 65 GVGEDHVI 72
>gi|326469376|gb|EGD93385.1| deubiquitination-protection protein dph1 [Trichophyton tonsurans
CBS 112818]
Length = 476
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
VK+ F + +KP V+++K+ + + ++V P +Q LI+ G+VLKD TL +KV
Sbjct: 12 VKSSAEPKFSLTLKPSSTVAEIKQILAGEEYANV-PPERQRLIYSGRVLKDTDTLASHKV 70
Query: 65 AENSFVVVMLTKSKV 79
E + L KS V
Sbjct: 71 KEGH--TIHLVKSAV 83
>gi|326483042|gb|EGE07052.1| deubiquitination-protection protein dph1 [Trichophyton equinum
CBS 127.97]
Length = 478
Score = 44.7 bits (104), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV 64
VK+ F + +KP V+++K+ + + ++V P +Q LI+ G+VLKD TL +KV
Sbjct: 12 VKSSAEPKFSLTLKPSSTVAEIKQILAGEEYANV-PPERQRLIYSGRVLKDTDTLASHKV 70
Query: 65 AENSFVVVMLTKSKV 79
E + L KS V
Sbjct: 71 KEGH--TIHLVKSAV 83
>gi|119473613|ref|XP_001258682.1| hypothetical protein NFIA_001330 [Neosartorya fischeri NRRL 181]
gi|119406835|gb|EAW16785.1| conserved hypothetical protein [Neosartorya fischeri NRRL 181]
Length = 434
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 148 APAPVSSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERA 207
APA ++ + + +L N EA V Q+ MG + R + RA+RAA NP+RA
Sbjct: 337 APAQTATETPATFNDRSVHLDGVQNEEAVVAQMESMG---FARIDIDRAMRAASFNPDRA 393
Query: 208 VEYLYSGIPE 217
VEYL +G P+
Sbjct: 394 VEYLLNGFPD 403
>gi|448111264|ref|XP_004201798.1| Piso0_002000 [Millerozyma farinosa CBS 7064]
gi|359464787|emb|CCE88492.1| Piso0_002000 [Millerozyma farinosa CBS 7064]
Length = 357
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +KT +E+ + P +S++K I T +DV P+ +Q LI+ G+VLKD T+
Sbjct: 5 ITINIKTSGDLKYEVSISPSSTISELKNEIATK--ADV-PSDRQRLIYSGRVLKDTETVS 61
Query: 61 ENKVAENSFVVVMLTKSKVSSSGAS----TVSAAPANQAQTTSSAP 102
K+ + ++ + + ++ ++ T SAA N++ +S P
Sbjct: 62 SYKIQAGHTIHLVKSAASKPAAPSASNNETTSAADNNRSDNSSGVP 107
>gi|302834487|ref|XP_002948806.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
gi|300265997|gb|EFJ50186.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
Length = 366
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MK+ +T+ G F +E + + +K ++ Q D + + + L+++GKVL D TT+
Sbjct: 1 MKLTFRTIAGKSFSVEAEESLTIGALKDKVQEAQ-PDCHRDAMK-LVYKGKVLDDGTTVG 58
Query: 61 ENKVAENSFVVVML 74
+N++ E F+VV +
Sbjct: 59 DNQITEQGFIVVFV 72
>gi|401419818|ref|XP_003874398.1| putative ubiquitin-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490634|emb|CBZ25896.1| putative ubiquitin-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 317
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 10/114 (8%)
Query: 1 MKVFVKTLKGTHFEIEV-KPEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTT 58
M V +K G +EV V++ KK I ET++ PAS+Q +I +GKVLKD
Sbjct: 1 MAVTIKLANGNQHTVEVPDFSITVAEFKKQIAETLE----IPASEQRIIMRGKVLKDDGV 56
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS 112
L + + + V+ + +SK S++ ST +A+ A +S+P + QP+TT+
Sbjct: 57 LSAIGMEDGN--VIHVVRSKKSAAVPSTTNASSTLAASDPTSSP--NVQPSTTT 106
>gi|308463692|ref|XP_003094118.1| hypothetical protein CRE_14291 [Caenorhabditis remanei]
gi|308248530|gb|EFO92482.1| hypothetical protein CRE_14291 [Caenorhabditis remanei]
Length = 518
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS---QQMLIHQGKVLKDVT 57
+KVFVK+ +E+E+ P+ VSD+K + + P + Q +I+ GK+LKD
Sbjct: 8 IKVFVKS-PTQKYEVEIAPDATVSDLKDKVLVL-----VPTANKEQICIIYTGKILKDEE 61
Query: 58 TLEENKVAENSFVVVML 74
TL NK+ + V +++
Sbjct: 62 TLSHNKIGDGHTVHLVI 78
>gi|149239781|ref|XP_001525766.1| deubiquitination-protection protein dph1 [Lodderomyces
elongisporus NRRL YB-4239]
gi|146449889|gb|EDK44145.1| deubiquitination-protection protein dph1 [Lodderomyces
elongisporus NRRL YB-4239]
Length = 382
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +K+ FE+ P+ V ++K+ I T + PA+ Q LI+ GKVLKD T+E
Sbjct: 4 ITITIKSSGDQKFEVTFDPKITVLELKELIATKSST---PAASQRLIYSGKVLKDDQTVE 60
Query: 61 ENKVAENSFVVVML 74
KV +NS V ++
Sbjct: 61 SYKV-QNSHTVHLV 73
>gi|154345506|ref|XP_001568690.1| putative ubiquitin-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066032|emb|CAM43817.1| putative ubiquitin-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 317
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 1 MKVFVKTLKGTHFEIEVKPED-KVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTT 58
M V +K G +EV + V++ K I ET+ PA +Q +I +GKVLKD
Sbjct: 1 MTVTIKLANGNQHTVEVADFNITVAEFKNQIAETL----AIPAEEQRIILRGKVLKDEGV 56
Query: 59 LEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPT 118
L + + + + V+ +K V+++ A+ VS+ P TS +Q+PA T
Sbjct: 57 LSAIGMEDGNVIHVVRSKKSVATAPATNVSSTPGTSDTVTS----------LNTQSPA-T 105
Query: 119 VAPPQSVPESAPPPAA 134
VA ++P++ P A
Sbjct: 106 VATQPALPQATANPYA 121
>gi|354548233|emb|CCE44970.1| hypothetical protein CPAR2_407730 [Candida parapsilosis]
Length = 364
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ V +K+ +E+ P K+S++K E V PA Q LI+ GKVLKD T E
Sbjct: 4 ITVTIKSSGDKKYEVTFNPSIKISELK---ELVAEKSSIPAPSQRLIYSGKVLKDTETAE 60
Query: 61 ENKV 64
K+
Sbjct: 61 SYKI 64
>gi|440297658|gb|ELP90315.1| UV excision repair protein rad23, putative [Entamoeba invadens
IP1]
Length = 330
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVT-TL 59
MK+ VKT++GT E EV+ + +K+ I Q D S L+ + ++LKD T T+
Sbjct: 1 MKINVKTVQGTSSEYEVQDATTIGQLKEMIHEKQNIDAASIS---LVLKSRMLKDDTQTI 57
Query: 60 EENKVAENSFVVVMLTKS 77
+ + EN FV++++ K+
Sbjct: 58 QAVGIKENDFVIMVVRKN 75
>gi|403216612|emb|CCK71108.1| hypothetical protein KNAG_0G00510 [Kazachstania naganishii CBS
8797]
Length = 375
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 1 MKVFVKTLKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTL 59
++V K K ++V E + V DVK+ + + D A Q LI GKVL+D
Sbjct: 2 VQVVFKDFKKNKETLDVDLEHESVKDVKEKLAAARDCD---AEQIKLIFSGKVLQDAKPF 58
Query: 60 EENKVAENSFVVVMLTKSK 78
E + EN V++M++K K
Sbjct: 59 AETGLKENDHVIMMVSKKK 77
>gi|237833513|ref|XP_002366054.1| ubiquitin, putative [Toxoplasma gondii ME49]
gi|211963718|gb|EEA98913.1| ubiquitin, putative [Toxoplasma gondii ME49]
gi|221508044|gb|EEE33631.1| ubiquitin, putative [Toxoplasma gondii VEG]
Length = 399
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEE 61
KV K G+ F +E++PE V VK+ T P Q LI++G++LKD +
Sbjct: 5 KVTFKVSGGSQFVLELEPEWTVKQVKEKCAT---QTEIPVQAQRLIYKGRILKDADLIST 61
Query: 62 NKVAENSFV 70
+ V + +
Sbjct: 62 HDVQDGHII 70
>gi|221486256|gb|EEE24517.1| ubiquitin, putative [Toxoplasma gondii GT1]
Length = 399
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEE 61
KV K G+ F +E++PE V VK+ T P Q LI++G++LKD +
Sbjct: 5 KVTFKVSGGSQFVLELEPEWTVKQVKEKCAT---QTEIPVQAQRLIYKGRILKDADLIST 61
Query: 62 NKVAENSFV 70
+ V + +
Sbjct: 62 HDVQDGHII 70
>gi|157876560|ref|XP_001686626.1| putative ubiquitin-like protein [Leishmania major strain Friedlin]
gi|68129701|emb|CAJ09007.1| putative ubiquitin-like protein [Leishmania major strain Friedlin]
Length = 317
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 12/115 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M V +K G+ +EV P+ ++ + + + ++ PAS+Q +I +GKVLKD L
Sbjct: 1 MAVTIKLANGSQHTVEV-PDFSITVAEFKKQIAEALEI-PASEQRIIMRGKVLKDDGVLS 58
Query: 61 ENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTST---QPTTTS 112
+ + + + V+ +K V+ ++ S+ T +++ PTS+ QP+TT+
Sbjct: 59 AIGMEDGNVIHVVRSKKNVAVPSSTNASS-------TLAASDPTSSPNVQPSTTT 106
>gi|241952440|ref|XP_002418942.1| ubiquitin domain-containing protein, putative [Candida
dubliniensis CD36]
gi|223642281|emb|CAX44250.1| ubiquitin domain-containing protein, putative [Candida
dubliniensis CD36]
Length = 325
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +K+ +E+ V P VS +K+ + + SD+ PA Q LI+ GKVLKD T+
Sbjct: 5 ITITIKSSGDKKYEVTVDPSITVSQLKELV--AEKSDI-PAGSQRLIYSGKVLKDTETVA 61
Query: 61 ENKV 64
KV
Sbjct: 62 SYKV 65
>gi|341892156|gb|EGT48091.1| hypothetical protein CAEBREN_08871 [Caenorhabditis brenneri]
Length = 684
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 76 KSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPP-QSVPESA-PPPA 133
K V+++ AS V PAN A T+ AP T+ P TT PAP PP + P SA PPA
Sbjct: 162 KPPVTTTPASAVKP-PANPAPNTTPAPNTTPAPNTT---PAPATKPPVTTTPASAVKPPA 217
Query: 134 APAPAPAPAPAPAPAPA 150
PAP PAP PAPA
Sbjct: 218 TPAPNTTPAPNTTPAPA 234
>gi|238883910|gb|EEQ47548.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 339
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +K+ +EI P VS +K+ + + SD+ PA Q LI+ GKVLKD T+
Sbjct: 5 ITITIKSSGDKKYEITFDPSITVSQLKELV--AEKSDI-PAGSQRLIYSGKVLKDTETVT 61
Query: 61 ENKV 64
KV
Sbjct: 62 SYKV 65
>gi|68477671|ref|XP_717148.1| hypothetical protein CaO19.5345 [Candida albicans SC5314]
gi|68477834|ref|XP_717069.1| hypothetical protein CaO19.12805 [Candida albicans SC5314]
gi|46438766|gb|EAK98092.1| hypothetical protein CaO19.12805 [Candida albicans SC5314]
gi|46438848|gb|EAK98173.1| hypothetical protein CaO19.5345 [Candida albicans SC5314]
Length = 339
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
+ + +K+ +E+ P VS +K+ + + SD+ PA Q LI+ GKVLKD T+
Sbjct: 5 ITITIKSSGDKKYEVTFDPSITVSQLKELV--AEKSDI-PAGSQRLIYSGKVLKDTETVT 61
Query: 61 ENKV 64
KV
Sbjct: 62 SYKV 65
>gi|294886433|ref|XP_002771708.1| Deubiquitination-protection protein dph1, putative [Perkinsus
marinus ATCC 50983]
gi|239875444|gb|EER03524.1| Deubiquitination-protection protein dph1, putative [Perkinsus
marinus ATCC 50983]
Length = 348
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 358 EEREA--IERLEAMGF-DRALVLEVFFACNKNEELAANYLLD 396
E+R A +E L +MGF D A LE C+ N ELA NYL D
Sbjct: 302 EQRYASELETLRSMGFVDTAANLEALRVCDGNVELAVNYLFD 343
>gi|294872216|ref|XP_002766209.1| RAD 23B protein - channel catfish, putative [Perkinsus marinus ATCC
50983]
gi|239866868|gb|EEQ98926.1| RAD 23B protein - channel catfish, putative [Perkinsus marinus ATCC
50983]
Length = 350
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 358 EEREA--IERLEAMGF-DRALVLEVFFACNKNEELAANYLLD 396
E+R A +E L +MGF D A LE C+ N ELA NYL D
Sbjct: 304 EQRYASELETLRSMGFVDTAANLEALRVCDGNVELAVNYLFD 345
>gi|146103390|ref|XP_001469550.1| putative ubiquitin-like protein [Leishmania infantum JPCM5]
gi|134073920|emb|CAM72659.1| putative ubiquitin-like protein [Leishmania infantum JPCM5]
Length = 317
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 12/115 (10%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVS--DVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVT 57
M V +K G+ +EV P+ V+ + KK I E ++ PAS+Q +I +GKVLKD
Sbjct: 1 MAVTIKLANGSQHTVEV-PDFSVTVAEFKKQIAEMLE----IPASEQRIIMRGKVLKDDA 55
Query: 58 TLEENKVAENSFVVVMLTKSKVSSSGASTVSAAPANQAQTTSSAPPTSTQPTTTS 112
L + + S V+ + +SK S + AS+ +A+ A +S+P + QP+TT+
Sbjct: 56 VLSAIGMEDGS--VIHVVRSKKSGAAASSTNASSTLAASDPTSSP--NVQPSTTT 106
>gi|281207510|gb|EFA81693.1| repC-binding protein A [Polysphondylium pallidum PN500]
Length = 220
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
MKV ++ + + +V E+KV +K E + + + Q LI+ GK+L++ L
Sbjct: 1 MKVTIRNVNKEVYTFDVTGEEKVIQLK---EMIADKHKHLPTWQTLIYSGKILENDNQLS 57
Query: 61 ENKVAENSFVVVMLTKSKVSS 81
+ EN F+V M+ K K S
Sbjct: 58 TYNITENGFIVCMVKKPKEES 78
>gi|150864814|ref|XP_001383791.2| nucleotide excision repair protein (ubiquitin-like protein)
[Scheffersomyces stipitis CBS 6054]
gi|149386070|gb|ABN65762.2| nucleotide excision repair protein (ubiquitin-like protein)
[Scheffersomyces stipitis CBS 6054]
Length = 366
Score = 38.1 bits (87), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLE 60
M+V K K +EV+ D V K+ + + + A Q ++ GKVL D TLE
Sbjct: 1 MQVIFKDFKKQKVPLEVELTDTVLATKEKLAAEKDCE---APQLKFVYSGKVLSDEKTLE 57
Query: 61 ENKVAENSFVVVMLT 75
E K+ E ++ M++
Sbjct: 58 EFKIKEGDSIIFMIS 72
>gi|328541641|ref|YP_004301750.1| hypothetical protein SL003B_0017 [Polymorphum gilvum SL003B-26A1]
gi|326411393|gb|ADZ68456.1| hypothetical protein SL003B_0017 [Polymorphum gilvum SL003B-26A1]
Length = 598
Score = 38.1 bits (87), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 32 TVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVSSSGASTVSAAP 91
T++ S V + + GK+L DV + N+ + VV L S ++G T AP
Sbjct: 92 TLENSRVLRSEADICAAGGKLLIDV---KSNQGSPGRARVVPLDGSAGETAG-QTAGQAP 147
Query: 92 ANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQSVPESAPP-PAAPAPAPAPAPAPAPAPA 150
A+ T+ T ++T +P A PQ +APP A AP+P P P P PAP
Sbjct: 148 ASTPGQTAGRTSGQAAATPPAETRSPVEARPQPADRAAPPQDRAAAPSPQPDPVPEPAPR 207
Query: 151 PVSSSVSD 158
+SS V++
Sbjct: 208 DLSSIVAE 215
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.310 0.126 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,453,821,050
Number of Sequences: 23463169
Number of extensions: 312144172
Number of successful extensions: 8333984
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 32370
Number of HSP's successfully gapped in prelim test: 61561
Number of HSP's that attempted gapping in prelim test: 5565365
Number of HSP's gapped (non-prelim): 1394629
length of query: 403
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 258
effective length of database: 8,957,035,862
effective search space: 2310915252396
effective search space used: 2310915252396
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 78 (34.7 bits)