Query 015628
Match_columns 403
No_of_seqs 312 out of 1480
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 15:55:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015628.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015628hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oqy_A HHR23A, UV excision rep 100.0 1.3E-75 4.5E-80 588.6 29.9 353 1-402 8-368 (368)
2 2qsf_X RAD23, UV excision repa 100.0 1.1E-38 3.9E-43 286.9 11.2 127 274-400 21-171 (171)
3 1pve_A HHR23B, UV excision rep 99.8 2.3E-21 8E-26 150.3 4.8 62 275-336 3-64 (72)
4 2f4m_B UV excision repair prot 99.8 1.6E-20 5.6E-25 141.3 8.2 59 276-334 2-60 (61)
5 3m62_B UV excision repair prot 99.8 2.8E-19 9.7E-24 149.5 7.9 77 1-80 2-78 (106)
6 1uel_A HHR23B, UV excision rep 99.8 4.4E-18 1.5E-22 139.2 12.1 78 1-81 1-81 (95)
7 4fbj_B NEDD8; effector-HOST ta 99.8 2.3E-18 7.9E-23 139.0 9.8 80 1-83 1-80 (88)
8 4dwf_A HLA-B-associated transc 99.8 2.3E-18 8E-23 138.8 9.3 75 1-79 6-80 (90)
9 3phx_B Ubiquitin-like protein 99.8 3.2E-18 1.1E-22 134.6 9.8 74 1-77 5-78 (79)
10 2wyq_A HHR23A, UV excision rep 99.7 7.1E-18 2.4E-22 134.2 9.8 76 1-79 6-84 (85)
11 4a20_A Ubiquitin-like protein 99.7 4.5E-18 1.5E-22 140.6 8.1 74 1-77 20-97 (98)
12 3v6c_B Ubiquitin; structural g 99.7 7.9E-18 2.7E-22 136.4 9.4 74 1-77 18-91 (91)
13 2kk8_A Uncharacterized protein 99.7 6.6E-18 2.3E-22 135.5 8.6 72 1-75 11-83 (84)
14 3plu_A Ubiquitin-like modifier 99.7 9.3E-18 3.2E-22 136.8 8.8 71 1-74 22-92 (93)
15 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 2E-17 6.8E-22 134.8 10.5 77 1-80 2-78 (96)
16 2lxa_A Ubiquitin-like protein 99.7 5.3E-18 1.8E-22 137.2 6.8 73 1-76 2-78 (87)
17 1wx7_A Ubiquilin 3; ubiquitin- 99.7 3E-17 1E-21 136.9 11.0 76 1-80 18-93 (106)
18 4hcn_B Polyubiquitin, ubiquiti 99.7 2.2E-17 7.5E-22 135.8 10.0 75 1-78 23-97 (98)
19 1ndd_A NEDD8, protein (ubiquit 99.7 3.4E-17 1.2E-21 126.8 10.2 75 1-78 1-75 (76)
20 3dbh_I NEDD8; cell cycle, acti 99.7 1.7E-17 6E-22 132.6 8.7 75 1-78 13-87 (88)
21 1ttn_A DC-UBP, dendritic cell- 99.7 2.5E-17 8.4E-22 137.6 9.1 77 1-80 24-100 (106)
22 2faz_A Ubiquitin-like containi 99.7 3.1E-17 1.1E-21 128.5 9.1 73 1-76 3-77 (78)
23 3a9j_A Ubiquitin; protein comp 99.7 5.7E-17 2E-21 125.5 10.4 75 1-78 1-75 (76)
24 1uh6_A Ubiquitin-like 5; beta- 99.7 1.6E-17 5.6E-22 137.5 7.3 71 1-74 29-99 (100)
25 2dzi_A Ubiquitin-like protein 99.7 4.5E-17 1.5E-21 128.1 9.5 73 1-76 8-80 (81)
26 3n3k_B Ubiquitin; hydrolase, p 99.7 3.5E-17 1.2E-21 129.9 8.9 76 1-79 4-79 (85)
27 1wy8_A NP95-like ring finger p 99.7 7.4E-17 2.5E-21 129.6 10.9 77 1-80 8-86 (89)
28 3mtn_B UBA80, ubcep1, ubiquiti 99.7 5.7E-17 2E-21 128.5 9.6 76 1-79 4-79 (85)
29 4eew_A Large proline-rich prot 99.7 4.4E-17 1.5E-21 130.8 9.0 71 1-75 18-88 (88)
30 1wgd_A Homocysteine-responsive 99.7 6.5E-17 2.2E-21 131.6 10.0 77 1-80 8-90 (93)
31 2hj8_A Interferon-induced 17 k 99.7 3.9E-17 1.3E-21 131.7 8.3 75 1-78 5-79 (88)
32 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 7.6E-17 2.6E-21 128.9 9.9 76 1-79 8-83 (87)
33 1sif_A Ubiquitin; hydrophobic 99.7 7.2E-17 2.5E-21 130.2 9.7 75 1-78 10-84 (88)
34 2uyz_B Small ubiquitin-related 99.7 4.3E-17 1.5E-21 128.1 7.9 75 1-78 4-78 (79)
35 1wia_A Hypothetical ubiquitin- 99.7 1E-16 3.4E-21 130.8 10.1 74 1-80 8-82 (95)
36 1v2y_A 3300001G02RIK protein; 99.7 3.8E-17 1.3E-21 136.6 7.2 77 1-80 8-100 (105)
37 2kan_A Uncharacterized protein 99.7 1.2E-16 4.2E-21 130.7 10.1 75 1-79 16-91 (94)
38 1wyw_B Ubiquitin-like protein 99.7 9E-17 3.1E-21 132.1 8.1 75 1-78 22-96 (97)
39 2bwf_A Ubiquitin-like protein 99.7 2.1E-16 7E-21 123.1 9.8 71 1-75 5-75 (77)
40 1wju_A NEDD8 ultimate buster-1 99.7 1.7E-16 5.8E-21 131.4 9.3 73 2-78 17-93 (100)
41 3vdz_A Ubiquitin-40S ribosomal 99.7 1.8E-16 6.2E-21 133.5 9.7 75 1-78 36-110 (111)
42 1yx5_B Ubiquitin; proteasome, 99.7 2.8E-16 9.5E-21 128.9 10.6 75 1-78 1-75 (98)
43 1v5o_A 1700011N24RIK protein; 99.7 2.4E-16 8.1E-21 130.7 9.8 76 1-79 8-88 (102)
44 1wx8_A Riken cDNA 4931431F19; 99.7 1.1E-16 3.8E-21 130.7 7.7 75 1-79 18-92 (96)
45 1dv0_A DNA repair protein HHR2 99.7 1.5E-17 5.2E-22 119.4 2.0 47 356-402 1-47 (47)
46 2klc_A Ubiquilin-1; ubiquitin- 99.7 2.9E-16 1E-20 130.0 9.9 74 1-78 26-99 (101)
47 3b1l_X E3 ubiquitin-protein li 99.5 7.5E-18 2.5E-22 131.3 0.0 75 1-78 1-75 (76)
48 1j8c_A Ubiquitin-like protein 99.7 3.2E-16 1.1E-20 134.9 10.0 76 1-80 33-108 (125)
49 1yqb_A Ubiquilin 3; structural 99.7 2.4E-16 8.2E-21 130.4 8.7 75 1-79 23-97 (100)
50 1wgh_A Ubiquitin-like 3, HCG-1 99.6 7E-16 2.4E-20 131.1 10.6 76 1-76 17-99 (116)
51 2l7r_A Ubiquitin-like protein 99.6 3.9E-16 1.3E-20 127.2 8.8 73 1-78 20-92 (93)
52 3l0w_B Monoubiquitinated proli 99.6 1E-15 3.5E-20 138.3 11.7 77 1-80 1-77 (169)
53 1wgg_A Ubiquitin carboxyl-term 99.6 5.4E-16 1.9E-20 127.4 8.8 72 1-77 8-80 (96)
54 1ify_A HHR23A, UV excision rep 99.6 2.3E-16 7.9E-21 114.2 5.5 49 166-217 1-49 (49)
55 1x1m_A Ubiquitin-like protein 99.6 8.5E-16 2.9E-20 128.5 9.5 74 1-77 13-101 (107)
56 2ojr_A Ubiquitin; lanthide-bin 99.6 1.5E-15 5E-20 127.8 10.6 75 1-78 36-110 (111)
57 2kdi_A Ubiquitin, vacuolar pro 99.6 2.5E-15 8.4E-20 127.2 10.5 76 1-79 10-85 (114)
58 3m63_B Ubiquitin domain-contai 99.6 4.2E-16 1.4E-20 129.2 5.6 72 1-76 29-100 (101)
59 1wxv_A BAG-family molecular ch 99.6 2.4E-15 8E-20 122.0 9.9 73 1-77 8-86 (92)
60 1se9_A Ubiquitin family; ubiqu 99.6 1.5E-15 5.1E-20 130.6 9.1 79 1-79 17-106 (126)
61 2gow_A HCG-1 protein, ubiquiti 99.6 1.2E-15 4E-20 131.4 8.3 74 1-77 18-101 (125)
62 1v5t_A 8430435I17RIK protein; 99.6 2E-15 6.7E-20 122.4 9.2 72 1-76 8-83 (90)
63 2kdb_A Homocysteine-responsive 99.6 8.4E-16 2.9E-20 127.2 7.1 71 1-73 24-99 (99)
64 3rt3_B Ubiquitin-like protein 99.6 1.9E-15 6.3E-20 134.1 9.8 76 1-79 82-157 (159)
65 2fnj_B Transcription elongatio 99.6 1.1E-15 3.8E-20 130.0 7.7 72 1-75 1-80 (118)
66 4ajy_B Transcription elongatio 99.6 1.4E-15 4.7E-20 129.2 8.0 73 1-76 1-81 (118)
67 1we6_A Splicing factor, putati 99.6 1.8E-15 6.3E-20 127.1 8.3 76 1-79 28-107 (111)
68 2kd0_A LRR repeats and ubiquit 99.6 4.4E-15 1.5E-19 119.1 9.6 70 3-75 14-83 (85)
69 3u30_A Ubiquitin, linear DI-ub 99.6 3.6E-15 1.2E-19 134.2 10.1 74 1-77 21-94 (172)
70 1v86_A DNA segment, CHR 7, way 99.6 1.7E-15 5.9E-20 124.0 7.0 71 1-76 18-88 (95)
71 3q3f_A Ribonuclease/ubiquitin 99.6 3E-15 1E-19 137.4 9.1 77 1-80 106-182 (189)
72 3rt3_B Ubiquitin-like protein 99.6 4.7E-15 1.6E-19 131.5 9.8 73 1-76 3-77 (159)
73 4dbg_A Ranbp-type and C3HC4-ty 99.6 6.9E-15 2.4E-19 122.7 9.5 73 1-76 25-100 (105)
74 3u5e_m 60S ribosomal protein L 99.6 2.7E-16 9.3E-21 135.6 0.0 76 1-79 1-76 (128)
75 3b08_A Polyubiquitin-C, ubiqui 99.5 1.9E-14 6.4E-19 125.7 10.4 73 1-76 1-73 (152)
76 2daf_A FLJ35834 protein; hypot 99.5 1.4E-14 4.8E-19 122.5 9.2 73 2-77 17-90 (118)
77 3b08_A Polyubiquitin-C, ubiqui 99.5 2.5E-14 8.7E-19 124.8 10.1 75 1-78 77-151 (152)
78 3u30_A Ubiquitin, linear DI-ub 99.5 1.4E-14 4.8E-19 130.3 8.5 75 1-78 97-171 (172)
79 1we7_A SF3A1 protein; structur 99.5 3E-14 1E-18 120.4 9.9 76 1-79 26-111 (115)
80 3u5c_f 40S ribosomal protein S 99.5 1.3E-15 4.5E-20 135.3 1.0 77 1-80 1-77 (152)
81 2dzj_A Synaptic glycoprotein S 99.5 1.5E-14 5.2E-19 117.0 6.1 69 1-72 11-85 (88)
82 2dzm_A FAS-associated factor 1 99.5 4.6E-14 1.6E-18 116.9 6.5 71 1-75 9-81 (100)
83 3ai5_A Yeast enhanced green fl 99.4 1.5E-13 5.2E-18 134.7 9.3 74 1-77 234-307 (307)
84 2lbc_A Ubiquitin carboxyl-term 99.4 7.4E-13 2.5E-17 113.9 10.3 41 361-401 80-121 (126)
85 1wf9_A NPL4 family protein; be 99.4 3.2E-13 1.1E-17 112.9 7.2 71 1-75 8-94 (107)
86 4b6w_A Tubulin-specific chaper 99.4 2E-13 6.9E-18 110.0 5.6 73 2-77 4-85 (86)
87 2kjr_A CG11242; UBL, ubiquitin 99.4 8.9E-13 3.1E-17 108.1 8.8 70 1-73 16-93 (95)
88 2xzm_9 RPS31E; ribosome, trans 99.4 6.4E-14 2.2E-18 128.3 0.3 71 1-79 1-71 (189)
89 2kj6_A Tubulin folding cofacto 99.3 1.7E-12 5.8E-17 106.9 8.1 71 2-75 16-95 (97)
90 1v6e_A Cytoskeleton-associated 99.3 2E-12 6.9E-17 105.6 8.2 73 1-76 8-88 (95)
91 2kzr_A Ubiquitin thioesterase 99.3 1.8E-12 6.1E-17 103.9 7.0 71 1-75 1-77 (86)
92 2io1_B Small ubiquitin-related 99.3 7.5E-12 2.6E-16 102.4 7.7 76 1-79 8-83 (94)
93 3shq_A UBLCP1; phosphatase, hy 99.3 4.3E-12 1.5E-16 125.4 6.9 71 1-75 6-79 (320)
94 2g3q_A Protein YBL047C; endocy 99.3 6.5E-12 2.2E-16 88.1 5.8 40 173-215 4-43 (43)
95 1vej_A Riken cDNA 4931431F19; 99.2 1.1E-11 3.8E-16 96.8 7.2 46 170-218 26-72 (74)
96 1vg5_A RSGI RUH-014, rhomboid 99.2 7.2E-12 2.5E-16 97.7 6.1 43 171-216 27-69 (73)
97 1t0y_A Tubulin folding cofacto 99.2 1.7E-11 5.9E-16 104.7 8.9 74 1-77 7-88 (122)
98 4ae4_A Ubiquitin-associated pr 99.2 4.4E-11 1.5E-15 101.8 10.4 40 358-397 75-114 (118)
99 1wm3_A Ubiquitin-like protein 99.2 4.1E-11 1.4E-15 93.0 9.1 71 1-74 2-72 (72)
100 2bwb_A Ubiquitin-like protein 99.2 1.6E-11 5.6E-16 87.4 5.7 41 171-214 5-46 (46)
101 2io0_B Small ubiquitin-related 99.2 5.8E-11 2E-15 96.6 9.5 75 1-78 6-80 (91)
102 3a4r_A Nfatc2-interacting prot 99.2 1.2E-10 4.2E-15 92.0 9.6 70 1-73 8-78 (79)
103 2g3q_A Protein YBL047C; endocy 99.2 3.1E-11 1.1E-15 84.6 5.3 38 360-397 5-42 (43)
104 2knz_A Ubiquilin-4; cytoplasm, 99.2 3.3E-11 1.1E-15 88.4 5.6 43 171-216 9-52 (53)
105 1veg_A NEDD8 ultimate buster-1 99.2 3.9E-11 1.3E-15 95.6 6.3 44 173-219 29-75 (83)
106 2d07_B Ubiquitin-like protein 99.1 1.2E-10 4E-15 95.1 8.6 74 1-77 18-91 (93)
107 1wz0_A Ubiquitin-like protein 99.1 1.2E-10 4E-15 97.1 8.8 76 1-79 25-100 (104)
108 2jy5_A Ubiquilin-1; UBA, alter 99.1 9.2E-11 3.2E-15 85.7 6.3 41 171-214 10-51 (52)
109 1wji_A Tudor domain containing 99.1 8.8E-11 3E-15 89.1 5.7 42 173-217 9-50 (63)
110 1wr1_B Ubiquitin-like protein 99.1 1.3E-10 4.3E-15 86.8 5.1 41 171-214 15-56 (58)
111 2k8h_A Small ubiquitin protein 99.1 2.3E-10 7.7E-15 96.3 7.3 75 1-78 27-101 (110)
112 2dna_A Unnamed protein product 99.1 1.6E-10 5.4E-15 88.4 5.7 45 171-218 17-62 (67)
113 1wji_A Tudor domain containing 99.1 1.4E-10 4.8E-15 88.0 5.1 43 359-401 9-51 (63)
114 2eke_C Ubiquitin-like protein 99.0 4E-10 1.4E-14 94.1 7.9 73 1-77 32-104 (106)
115 2dak_A Ubiquitin carboxyl-term 99.0 1.1E-10 3.8E-15 88.6 4.1 43 173-218 9-51 (63)
116 1wiv_A UBP14, ubiquitin-specif 99.0 3.5E-10 1.2E-14 88.3 5.8 40 173-215 29-68 (73)
117 1wjn_A Tubulin-folding protein 99.0 1E-09 3.5E-14 89.7 8.2 72 2-76 11-93 (97)
118 1z96_A DNA-damage, UBA-domain 99.0 4.7E-10 1.6E-14 77.0 5.1 39 171-212 2-40 (40)
119 2crn_A Ubash3A protein; compac 99.0 2.8E-10 9.4E-15 86.6 4.0 43 173-218 9-52 (64)
120 1vg5_A RSGI RUH-014, rhomboid 99.0 4E-10 1.4E-14 87.8 5.0 48 353-400 23-70 (73)
121 2dkl_A Trinucleotide repeat co 99.0 6.5E-10 2.2E-14 89.2 6.2 44 359-402 21-64 (85)
122 1wgn_A UBAP1, ubiquitin associ 99.0 5.5E-10 1.9E-14 83.1 5.2 49 352-400 12-60 (63)
123 2cpw_A CBL-interacting protein 99.0 5.8E-10 2E-14 84.9 5.5 42 361-402 21-63 (64)
124 2dag_A Ubiquitin carboxyl-term 99.0 6.7E-10 2.3E-14 86.9 5.8 43 173-218 9-52 (74)
125 1whc_A RSGI RUH-027, UBA/UBX 3 99.0 4.2E-10 1.4E-14 85.7 4.3 42 174-218 10-52 (64)
126 1z96_A DNA-damage, UBA-domain 99.0 7.2E-10 2.5E-14 76.1 5.1 39 357-395 2-40 (40)
127 1ify_A HHR23A, UV excision rep 98.9 8.4E-10 2.9E-14 79.6 5.3 41 357-397 6-46 (49)
128 2cpw_A CBL-interacting protein 98.9 5.5E-10 1.9E-14 85.0 4.3 40 174-216 20-60 (64)
129 2dag_A Ubiquitin carboxyl-term 98.9 7.8E-10 2.7E-14 86.5 5.2 44 359-402 9-53 (74)
130 2dai_A Ubadc1, ubiquitin assoc 98.9 7.9E-10 2.7E-14 88.3 5.0 44 359-402 29-72 (83)
131 2ekk_A UBA domain from E3 ubiq 98.9 7.8E-10 2.7E-14 79.0 4.4 38 173-214 9-46 (47)
132 1whc_A RSGI RUH-027, UBA/UBX 3 98.9 1.1E-09 3.9E-14 83.2 5.3 42 361-402 11-53 (64)
133 1wiv_A UBP14, ubiquitin-specif 98.9 1.3E-09 4.4E-14 85.1 5.1 46 356-401 26-71 (73)
134 2jy5_A Ubiquilin-1; UBA, alter 98.9 1.5E-09 5.1E-14 79.2 4.9 38 361-398 14-52 (52)
135 2dak_A Ubiquitin carboxyl-term 98.9 6.7E-10 2.3E-14 84.2 2.8 43 359-401 9-51 (63)
136 2ooa_A E3 ubiquitin-protein li 98.9 2.5E-09 8.4E-14 76.9 5.2 37 361-397 13-49 (52)
137 2crn_A Ubash3A protein; compac 98.9 2.2E-09 7.5E-14 81.7 5.2 42 361-402 11-53 (64)
138 2dai_A Ubadc1, ubiquitin assoc 98.8 3E-09 1E-13 85.0 5.6 43 173-218 29-71 (83)
139 1vek_A UBP14, ubiquitin-specif 98.8 2.6E-09 9E-14 85.5 5.0 43 173-218 29-72 (84)
140 2ekk_A UBA domain from E3 ubiq 98.8 2.5E-09 8.4E-14 76.3 4.1 38 360-398 10-47 (47)
141 2knz_A Ubiquilin-4; cytoplasm, 98.8 5E-09 1.7E-13 76.7 5.6 38 361-398 13-51 (53)
142 1wgn_A UBAP1, ubiquitin associ 98.8 3.8E-09 1.3E-13 78.6 4.7 39 173-214 19-57 (63)
143 2d9s_A CBL E3 ubiquitin protei 98.8 5.7E-09 2E-13 75.4 4.7 38 361-398 11-48 (53)
144 1vek_A UBP14, ubiquitin-specif 98.8 5.6E-09 1.9E-13 83.6 5.2 44 359-402 29-73 (84)
145 1veg_A NEDD8 ultimate buster-1 98.8 8.3E-09 2.8E-13 82.2 5.6 42 359-400 29-70 (83)
146 2lbc_A Ubiquitin carboxyl-term 98.8 8.8E-09 3E-13 88.4 6.1 41 173-216 78-118 (126)
147 2dah_A Ubiquilin-3; UBA domain 98.7 1.3E-08 4.4E-13 74.8 5.2 41 172-215 8-49 (54)
148 3kyd_D Small ubiquitin-related 98.7 5.1E-08 1.8E-12 82.4 9.5 73 1-76 41-113 (115)
149 2cwb_A Chimera of immunoglobul 98.7 1.4E-08 4.6E-13 84.8 5.8 42 172-216 65-107 (108)
150 2bwb_A Ubiquitin-like protein 98.7 2.3E-08 7.8E-13 71.1 5.5 37 361-397 9-46 (46)
151 2dkl_A Trinucleotide repeat co 98.7 2.5E-08 8.4E-13 80.0 5.5 38 174-214 22-59 (85)
152 1vej_A Riken cDNA 4931431F19; 98.6 4.2E-08 1.4E-12 76.5 5.8 42 360-401 30-72 (74)
153 2dah_A Ubiquilin-3; UBA domain 98.6 4.6E-08 1.6E-12 71.8 5.5 41 360-400 10-51 (54)
154 1wr1_B Ubiquitin-like protein 98.6 4.1E-08 1.4E-12 73.1 5.2 38 361-398 19-57 (58)
155 2juj_A E3 ubiquitin-protein li 98.5 7.4E-08 2.5E-12 69.8 4.9 38 360-397 8-45 (56)
156 1dv0_A DNA repair protein HHR2 98.5 1.9E-08 6.6E-13 71.8 1.3 41 172-215 3-43 (47)
157 2dna_A Unnamed protein product 98.5 1.7E-07 5.9E-12 71.6 5.7 47 355-401 13-62 (67)
158 3pge_A SUMO-modified prolifera 98.5 4.7E-07 1.6E-11 83.5 9.4 76 1-80 30-105 (200)
159 2pjh_A Protein NPL4, nuclear p 98.5 1E-07 3.4E-12 75.5 4.1 69 1-73 5-78 (80)
160 2oo9_A E3 ubiquitin-protein li 98.4 2.5E-07 8.4E-12 64.6 4.9 37 361-397 6-42 (46)
161 3k9o_A Ubiquitin-conjugating e 98.4 1.9E-07 6.4E-12 86.2 5.5 75 311-397 127-201 (201)
162 3tix_A Ubiquitin-like protein 98.4 3.3E-07 1.1E-11 83.6 6.8 75 1-79 58-132 (207)
163 2ooa_A E3 ubiquitin-protein li 98.4 3E-07 1E-11 66.1 5.2 38 173-213 11-48 (52)
164 2d9s_A CBL E3 ubiquitin protei 98.4 5.2E-07 1.8E-11 65.2 5.2 38 173-213 9-46 (53)
165 4ae4_A Ubiquitin-associated pr 98.3 5.4E-07 1.8E-11 76.5 5.9 45 354-398 3-47 (118)
166 2oo9_A E3 ubiquitin-protein li 98.3 1.4E-06 5E-11 60.8 5.6 41 170-213 1-41 (46)
167 2cwb_A Chimera of immunoglobul 98.3 9.2E-07 3.1E-11 73.7 5.4 40 360-399 67-107 (108)
168 3goe_A DNA repair protein RAD6 98.2 6.5E-06 2.2E-10 64.4 9.2 70 2-74 11-81 (82)
169 3e46_A Ubiquitin-conjugating e 98.2 1.2E-06 4.1E-11 83.7 5.9 75 311-397 179-253 (253)
170 1wj7_A Hypothetical protein (R 98.2 2.5E-06 8.5E-11 70.4 6.4 42 359-400 39-81 (104)
171 2juj_A E3 ubiquitin-protein li 98.2 1.9E-06 6.4E-11 62.4 4.7 38 173-213 7-44 (56)
172 3v7o_A Minor nucleoprotein VP3 98.1 3.7E-07 1.3E-11 84.3 0.0 75 1-79 22-96 (227)
173 3k9o_A Ubiquitin-conjugating e 98.1 2.4E-06 8.3E-11 78.7 5.2 43 168-213 158-200 (201)
174 2jxx_A Nfatc2-interacting prot 98.1 1.5E-05 5.1E-10 65.3 8.9 70 1-73 26-96 (97)
175 2cp8_A NEXT to BRCA1 gene 1 pr 98.0 3.2E-06 1.1E-10 61.7 3.7 46 356-401 4-52 (54)
176 1wj7_A Hypothetical protein (R 98.0 1.1E-05 3.8E-10 66.5 6.1 44 171-217 37-81 (104)
177 1oqy_A HHR23A, UV excision rep 97.9 4.8E-06 1.6E-10 83.5 4.0 42 359-400 168-209 (368)
178 3uf8_A Ubiquitin-like protein 97.8 5.3E-05 1.8E-09 70.1 7.8 73 2-78 23-95 (209)
179 2l76_A Nfatc2-interacting prot 97.7 0.00011 3.7E-09 59.7 8.5 72 1-76 22-93 (95)
180 4efo_A Serine/threonine-protei 97.7 0.0001 3.5E-09 59.9 8.0 63 9-74 22-87 (94)
181 2cp8_A NEXT to BRCA1 gene 1 pr 97.7 3.8E-05 1.3E-09 56.0 4.4 42 170-214 6-48 (54)
182 2qsf_X RAD23, UV excision repa 97.7 3.6E-05 1.2E-09 69.1 4.8 41 171-214 128-168 (171)
183 2bps_A YUKD protein; ubiquitin 97.6 8.7E-05 3E-09 58.8 5.8 70 2-72 6-80 (81)
184 2kc2_A Talin-1, F1; FERM, adhe 97.5 0.00013 4.4E-09 62.6 6.5 69 2-73 13-120 (128)
185 3ix6_A TS, tsase, thymidylate 97.5 1.3E-05 4.4E-10 79.9 0.0 74 1-78 22-95 (360)
186 2al3_A TUG long isoform; TUG U 97.4 0.00054 1.8E-08 55.1 8.0 73 1-76 10-82 (90)
187 4da1_A Protein phosphatase 1K, 97.3 3.9E-05 1.3E-09 77.1 0.0 74 2-79 32-105 (389)
188 3qx1_A FAS-associated factor 1 97.2 0.0012 4.1E-08 52.0 7.9 68 2-73 9-81 (84)
189 2dzk_A UBX domain-containing p 97.2 0.0032 1.1E-07 52.3 10.8 71 2-75 15-90 (109)
190 2cos_A Serine/threonine protei 97.2 0.00046 1.6E-08 50.0 4.8 42 173-217 9-52 (54)
191 3ihp_A Ubiquitin carboxyl-term 97.0 0.0008 2.7E-08 74.3 6.9 40 361-400 722-761 (854)
192 2pwq_A Ubiquitin conjugating e 96.9 0.00014 4.9E-09 67.7 0.2 73 312-397 143-215 (216)
193 3e46_A Ubiquitin-conjugating e 96.9 0.00087 3E-08 63.8 5.5 43 168-213 210-252 (253)
194 1wj4_A KIAA0794 protein; UBX d 96.5 0.0053 1.8E-07 52.2 7.1 69 2-74 45-118 (124)
195 1wgl_A TOLL-interacting protei 96.3 0.0056 1.9E-07 45.4 4.9 41 361-401 11-53 (59)
196 2cr5_A Reproduction 8; UBX dom 96.2 0.028 9.5E-07 46.4 9.3 69 2-74 25-97 (109)
197 1tte_A Ubiquitin-conjugating e 96.0 0.0045 1.6E-07 57.5 4.4 77 311-389 122-199 (215)
198 1s3s_G P47 protein; AAA ATPase 96.0 0.021 7E-07 48.6 7.8 66 2-69 54-122 (127)
199 2dam_A ETEA protein; KIAA0887, 95.4 0.035 1.2E-06 42.1 6.3 47 352-398 11-59 (67)
200 2dal_A Protein KIAA0794; FAS a 95.2 0.041 1.4E-06 41.0 5.9 47 352-398 8-55 (62)
201 2cos_A Serine/threonine protei 94.9 0.021 7.2E-07 41.3 3.6 43 357-399 7-50 (54)
202 1wgl_A TOLL-interacting protei 94.9 0.023 7.9E-07 42.0 4.0 39 173-214 9-49 (59)
203 1v92_A NSFL1 cofactor P47; 3-h 94.7 0.052 1.8E-06 37.5 5.1 40 359-398 5-45 (46)
204 2pwq_A Ubiquitin conjugating e 94.6 0.006 2E-07 56.7 0.0 41 172-215 176-216 (216)
205 2l32_A Small archaeal modifier 94.6 0.095 3.2E-06 40.3 6.9 60 1-73 1-60 (74)
206 2daj_A KIAA0977 protein, COBL- 94.4 0.17 5.6E-06 40.1 7.8 70 2-77 12-84 (91)
207 4fp9_B Mterf domain-containing 94.2 0.34 1.1E-05 47.7 11.6 93 289-398 94-195 (335)
208 2dhy_A CUE domain-containing p 94.0 0.074 2.5E-06 40.3 5.0 38 360-397 19-58 (67)
209 2dhy_A CUE domain-containing p 93.9 0.11 3.7E-06 39.4 5.7 45 169-214 14-58 (67)
210 2di0_A Activating signal coint 93.9 0.19 6.4E-06 38.5 7.0 50 168-220 8-60 (71)
211 1otr_A Protein CUE2; protein-p 93.8 0.086 2.9E-06 37.5 4.6 39 173-214 4-44 (49)
212 4e71_A Plexin-B2, MM1; transme 93.8 0.29 9.9E-06 40.7 8.6 64 10-74 23-109 (111)
213 1ryj_A Unknown; beta/alpha pro 93.7 0.36 1.2E-05 36.3 8.4 61 1-74 5-65 (70)
214 3ihp_A Ubiquitin carboxyl-term 92.8 0.079 2.7E-06 58.4 4.8 40 172-214 719-758 (854)
215 2r2o_A Plexin-B1; effector dom 92.8 0.32 1.1E-05 41.9 7.5 65 11-76 41-129 (138)
216 4a3p_A Ubiquitin carboxyl-term 92.8 0.43 1.5E-05 43.9 9.0 61 13-76 142-209 (217)
217 1otr_A Protein CUE2; protein-p 92.6 0.17 5.9E-06 36.0 4.7 40 360-399 5-46 (49)
218 3jyu_A Ubiquitin carboxyl-term 92.4 0.63 2.2E-05 43.2 9.8 61 13-76 154-221 (231)
219 2cp9_A EF-TS, EF-TSMT, elongat 92.4 0.19 6.5E-06 37.7 4.9 36 362-397 12-48 (64)
220 1vjk_A Molybdopterin convertin 91.9 0.91 3.1E-05 36.2 8.9 68 1-73 10-92 (98)
221 3h6n_A Plexin-D1; structural g 90.9 0.99 3.4E-05 38.3 8.4 65 10-75 16-104 (127)
222 3m66_A Mterf3, mterf domain-co 90.8 0.95 3.3E-05 42.4 9.2 41 174-217 6-55 (270)
223 2cp9_A EF-TS, EF-TSMT, elongat 90.8 0.39 1.4E-05 36.0 5.2 36 175-213 11-47 (64)
224 3rpf_C Molybdopterin convertin 90.7 0.64 2.2E-05 35.1 6.5 65 1-73 1-68 (74)
225 4e74_A Plexin-A4; RBD, structu 90.3 0.67 2.3E-05 38.8 6.7 65 11-76 27-115 (117)
226 1pve_A HHR23B, UV excision rep 89.8 0.14 4.7E-06 39.4 2.0 39 279-322 20-61 (72)
227 3ivf_A Talin-1; FERM domain, c 88.2 1.3 4.6E-05 43.4 8.5 71 3-74 6-83 (371)
228 2qho_B E3 ubiquitin-protein li 87.8 0.57 2E-05 33.1 3.8 35 363-397 13-49 (53)
229 2f4m_B UV excision repair prot 87.8 0.22 7.6E-06 37.0 1.8 36 281-321 20-58 (61)
230 2dzl_A Protein FAM100B; UBA-li 87.7 0.96 3.3E-05 33.9 5.4 41 358-398 16-57 (66)
231 3mva_O Transcription terminati 86.8 1.3 4.6E-05 43.1 7.4 38 173-213 19-60 (343)
232 3po0_A Small archaeal modifier 86.7 4.3 0.00015 31.3 9.0 56 11-73 18-83 (89)
233 1ip9_A BEM1 protein; ubiquitin 85.9 0.98 3.4E-05 35.6 4.7 43 2-50 14-57 (85)
234 1ufz_A Hypothetical protein BA 85.9 1.5 5.1E-05 34.4 5.7 45 353-397 24-75 (83)
235 1wgk_A Riken cDNA 2900073H19 p 85.6 0.95 3.3E-05 37.5 4.8 69 1-74 12-103 (114)
236 4dbg_B Ring finger protein 31; 85.3 0.91 3.1E-05 39.9 4.7 38 357-394 100-138 (162)
237 1oey_A P67-PHOX, neutrophil cy 85.0 1.5 5E-05 34.5 5.4 44 2-50 7-50 (83)
238 1tyg_B YJBS; alpha beta barrel 84.7 1.7 5.7E-05 34.4 5.6 57 8-74 25-82 (87)
239 1p3q_Q VPS9P, vacuolar protein 84.7 0.42 1.4E-05 34.6 1.9 39 358-396 11-51 (54)
240 2juo_A GA-binding protein alph 83.9 2.9 0.0001 32.9 6.5 60 14-76 6-65 (89)
241 3kuz_A Plexin-C1; structural g 82.5 3 0.0001 35.2 6.6 61 11-74 39-125 (126)
242 2di0_A Activating signal coint 82.3 2.3 8E-05 32.4 5.3 44 355-398 8-54 (71)
243 3e21_A HFAF1, FAS-associated f 82.2 1.1 3.8E-05 31.2 3.2 36 360-395 6-43 (45)
244 1q02_A Sequestosome 1; helical 81.9 1.4 4.7E-05 31.6 3.6 37 359-395 10-48 (52)
245 3dwg_C 9.5 kDa culture filtrat 81.5 4.1 0.00014 31.8 6.8 72 1-74 1-88 (93)
246 1vd2_A Protein kinase C, IOTA 81.2 4.3 0.00015 32.2 6.8 68 2-74 8-86 (89)
247 1f0z_A THis protein; ubiquitin 80.7 2.2 7.4E-05 31.4 4.6 61 1-74 1-61 (66)
248 2llw_A Heat shock protein STI1 80.6 1.6 5.5E-05 33.2 3.9 26 296-323 27-52 (71)
249 1ef1_A Moesin; membrane, FERM 80.1 6.3 0.00021 37.0 8.8 73 1-77 2-80 (294)
250 2kmm_A Guanosine-3',5'-BIS(dip 79.9 3.3 0.00011 30.5 5.5 62 1-74 1-62 (73)
251 2kl0_A Putative thiamin biosyn 79.5 1.9 6.4E-05 32.8 4.0 60 1-74 1-60 (73)
252 3onh_A Ubiquitin-activating en 79.3 4.7 0.00016 34.1 6.7 51 20-74 19-78 (127)
253 1h4r_A Merlin; FERM, neurofibr 79.2 6.9 0.00024 37.2 8.9 73 1-77 23-100 (314)
254 2k5p_A THis protein, thiamine- 79.1 1.9 6.6E-05 33.2 4.0 61 1-74 1-64 (78)
255 2k9x_A Tburm1, uncharacterized 78.5 0.69 2.4E-05 38.2 1.4 69 1-74 5-97 (110)
256 4dbg_B Ring finger protein 31; 78.4 1.6 5.4E-05 38.4 3.6 36 174-211 103-138 (162)
257 2qjl_A URM1, ubiquitin-related 78.4 3.1 0.00011 33.1 5.2 35 1-35 2-46 (99)
258 3ig3_A Plxna3 protein; plexin 77.4 7.4 0.00025 41.1 8.9 65 11-76 247-335 (627)
259 2lnm_A Protein TIC 40, chlorop 77.0 2.3 7.9E-05 31.2 3.7 39 278-321 14-52 (62)
260 3hm6_X Plexin-B1; structural g 76.0 6.8 0.00023 41.4 8.2 65 11-76 274-362 (644)
261 1ixs_A Holliday junction DNA h 74.9 2 6.9E-05 31.7 2.9 29 170-201 14-42 (62)
262 1q02_A Sequestosome 1; helical 74.8 2.9 9.9E-05 29.9 3.5 38 171-211 8-47 (52)
263 1tr8_A Conserved protein (MTH1 74.8 4 0.00014 33.2 4.9 38 354-394 63-101 (102)
264 1tte_A Ubiquitin-conjugating e 72.0 2.4 8.3E-05 38.9 3.4 23 174-199 170-192 (215)
265 2i1j_A Moesin; FERM, coiled-co 72.0 9.4 0.00032 40.0 8.3 74 1-78 5-84 (575)
266 2q5w_D Molybdopterin convertin 71.7 6.6 0.00023 29.2 5.3 54 11-73 16-71 (77)
267 2l52_A Methanosarcina acetivor 71.5 15 0.00053 29.0 7.7 67 1-73 4-93 (99)
268 3ivf_A Talin-1; FERM domain, c 71.2 12 0.00043 36.4 8.6 70 2-74 87-166 (371)
269 1wgr_A Growth factor receptor- 70.8 14 0.00047 29.9 7.2 74 3-78 12-95 (100)
270 1y8x_B Ubiquitin-activating en 69.6 3.7 0.00013 33.2 3.5 59 12-73 6-82 (98)
271 1fm0_D Molybdopterin convertin 69.6 24 0.00083 26.2 8.1 57 11-73 17-75 (81)
272 2cu3_A Unknown function protei 68.2 6.9 0.00023 28.4 4.5 56 8-74 4-59 (64)
273 3qij_A Protein 4.1; cytoskelet 68.0 14 0.00049 35.0 8.0 70 1-73 18-93 (296)
274 4eut_A Serine/threonine-protei 67.3 19 0.00064 34.8 8.9 52 10-64 321-374 (396)
275 1ufz_A Hypothetical protein BA 66.1 13 0.00044 29.1 5.8 41 174-214 35-75 (83)
276 1ixs_A Holliday junction DNA h 65.0 7.8 0.00027 28.5 4.2 26 358-383 16-41 (62)
277 2ns5_A Partitioning-defective 64.7 42 0.0014 26.3 8.6 72 1-74 3-81 (85)
278 1zoq_C CREB-binding protein, i 57.8 5.9 0.0002 27.4 2.2 25 286-310 18-42 (47)
279 2kvr_A Ubiquitin carboxyl-term 56.1 8.8 0.0003 32.4 3.6 32 14-48 59-90 (130)
280 4fp9_B Mterf domain-containing 54.2 24 0.00082 34.4 6.9 32 352-383 105-137 (335)
281 3qa8_A MGC80376 protein; kinas 54.0 13 0.00044 39.8 5.2 50 10-62 321-371 (676)
282 1b4u_A LIGA, LIGB, protocatech 53.1 27 0.00092 29.9 6.1 48 301-373 37-89 (139)
283 2llv_A Heat shock protein STI1 53.1 6.8 0.00023 29.5 2.1 33 283-320 30-63 (71)
284 2g1e_A Hypothetical protein TA 53.0 41 0.0014 25.4 6.8 58 15-73 19-84 (90)
285 1p3q_Q VPS9P, vacuolar protein 52.3 5.8 0.0002 28.6 1.5 42 171-213 10-51 (54)
286 1aip_C EF-TS, elongation facto 51.5 20 0.00068 32.5 5.3 37 174-213 4-41 (196)
287 3m66_A Mterf3, mterf domain-co 51.3 33 0.0011 31.6 7.1 25 172-199 40-64 (270)
288 1vdl_A Ubiquitin carboxyl-term 51.2 24 0.00083 27.0 4.9 37 362-398 27-65 (80)
289 1xb2_B EF-TS, elongation facto 51.1 16 0.00056 35.0 5.0 36 175-213 6-42 (291)
290 1wgy_A RAP guanine nucleotide 51.1 54 0.0018 26.6 7.4 66 5-75 14-86 (104)
291 1rws_A Hypothetical protein PF 49.4 6 0.0002 30.0 1.3 48 14-73 24-71 (77)
292 2inc_C TOUB protein; DIIRON, 4 47.5 80 0.0027 24.6 7.4 61 13-74 15-81 (83)
293 2lnm_A Protein TIC 40, chlorop 46.5 11 0.00038 27.4 2.4 41 278-324 5-45 (62)
294 4gdk_A Ubiquitin-like protein 46.3 65 0.0022 25.3 7.0 60 14-76 23-86 (91)
295 1tr8_A Conserved protein (MTH1 46.0 23 0.00078 28.7 4.4 36 174-212 66-102 (102)
296 2lva_A Ubiquitin carboxyl-term 51.4 4.4 0.00015 34.1 0.0 36 362-397 21-58 (129)
297 2c7h_A RBBP6, retinoblastoma-b 45.5 28 0.00097 27.3 4.7 33 3-35 9-43 (86)
298 3hvz_A Uncharacterized protein 44.3 50 0.0017 25.1 5.9 63 2-76 7-69 (78)
299 2ylm_A Ubiquitin carboxyl-term 43.8 60 0.002 33.5 8.3 58 12-72 353-418 (530)
300 2eel_A Cell death activator CI 43.4 50 0.0017 26.2 5.9 50 21-76 28-79 (91)
301 3ge3_C Toluene-4-monooxygenase 43.0 67 0.0023 25.1 6.3 61 13-74 17-82 (84)
302 3q8g_A CRAL-TRIO domain-contai 41.2 40 0.0014 32.2 6.1 44 352-395 32-83 (320)
303 3e7l_A Transcriptional regulat 41.1 14 0.00047 26.6 2.2 24 371-394 19-42 (63)
304 2llw_A Heat shock protein STI1 40.5 43 0.0015 25.2 4.9 37 280-321 24-60 (71)
305 1q1o_A Cell division control p 40.0 31 0.0011 27.7 4.2 26 10-35 22-47 (98)
306 2hj1_A Hypothetical protein; s 38.8 35 0.0012 27.2 4.4 59 11-74 26-84 (97)
307 1umq_A Photosynthetic apparatu 38.3 16 0.00054 28.2 2.2 23 372-394 42-64 (81)
308 4g3o_A E3 ubiquitin-protein li 37.8 70 0.0024 23.3 5.4 46 167-214 11-56 (58)
309 3w1s_C Ubiquitin-like protein 37.2 1.3E+02 0.0046 23.5 7.5 57 14-75 26-85 (91)
310 2cu1_A Mitogen-activated prote 37.2 81 0.0028 25.5 6.2 45 2-52 8-53 (103)
311 2l9b_A MRNA 3'-END-processing 37.0 29 0.001 28.5 3.7 29 287-319 58-86 (109)
312 1v92_A NSFL1 cofactor P47; 3-h 35.4 77 0.0026 20.9 5.2 38 173-212 5-42 (46)
313 2kna_A Baculoviral IAP repeat- 35.0 39 0.0013 27.2 4.2 36 176-214 30-72 (104)
314 3rui_B Autophagy-related prote 34.7 1.4E+02 0.0046 24.6 7.5 59 15-76 51-113 (118)
315 3e7l_A Transcriptional regulat 34.1 47 0.0016 23.6 4.1 42 165-216 4-45 (63)
316 1oai_A Nuclear RNA export fact 33.5 93 0.0032 22.4 5.6 40 354-393 2-42 (59)
317 1f2r_I Inhibitor of caspase-ac 33.1 67 0.0023 25.9 5.2 49 21-75 37-89 (100)
318 3u52_E Phenol hydroxylase comp 31.5 1.5E+02 0.0053 24.5 7.2 61 13-73 40-107 (119)
319 2dhz_A RAP guanine nucleotide 31.3 1.1E+02 0.0037 25.4 6.3 63 8-75 17-92 (120)
320 3k6g_A Telomeric repeat-bindin 31.3 74 0.0025 25.8 5.1 41 357-397 8-52 (111)
321 3au4_A Myosin-X; protein-prote 30.9 58 0.002 33.4 5.7 35 1-35 217-251 (555)
322 2dal_A Protein KIAA0794; FAS a 30.4 73 0.0025 23.0 4.6 41 171-213 13-53 (62)
323 1ltl_A DNA replication initiat 30.0 35 0.0012 32.0 3.6 55 278-332 19-75 (279)
324 1n62_A Carbon monoxide dehydro 29.4 40 0.0014 29.5 3.6 28 1-29 4-31 (166)
325 3hrd_D Nicotinate dehydrogenas 29.1 39 0.0013 29.4 3.4 27 1-28 4-30 (160)
326 1v8c_A MOAD related protein; r 29.0 1.4E+02 0.0048 25.9 7.1 56 14-73 17-81 (168)
327 3h9d_A ATG8, microtubule-assoc 28.9 1.9E+02 0.0065 23.7 7.5 59 15-76 52-114 (119)
328 2kmc_A Fermitin family homolog 28.3 2.3E+02 0.0079 22.7 9.1 73 2-75 21-99 (102)
329 1l6x_B Minimized B-domain of p 28.3 73 0.0025 20.6 3.6 26 323-368 6-32 (34)
330 1aua_A Phosphatidylinositol tr 27.5 71 0.0024 29.6 5.2 44 352-395 23-74 (296)
331 3m95_A Autophagy related prote 27.3 1.5E+02 0.0053 24.6 6.7 59 15-76 57-119 (125)
332 3lxf_A Ferredoxin; iron, iron- 27.2 61 0.0021 25.6 4.1 28 2-29 2-29 (104)
333 1t3q_A Quinoline 2-oxidoreduct 27.1 45 0.0015 29.0 3.5 28 1-29 10-37 (168)
334 2zc2_A DNAD-like replication p 27.0 67 0.0023 23.8 4.0 30 354-383 17-47 (78)
335 3pvl_A Myosin VIIA isoform 1; 26.8 1.1E+02 0.0038 32.3 7.1 46 1-48 264-309 (655)
336 1wz3_A Autophagy 12B, ATG12B, 26.6 1.3E+02 0.0043 23.8 5.8 57 14-76 31-91 (96)
337 2ztd_A Holliday junction ATP-d 26.5 38 0.0013 30.8 3.0 26 173-201 164-189 (212)
338 1pgy_A SWA2P; UBA, ubiquitin, 26.5 1.3E+02 0.0043 20.7 4.8 32 357-388 4-36 (47)
339 1eo6_A GATE-16, golgi-associat 26.5 2E+02 0.0068 23.4 7.2 58 16-76 50-111 (117)
340 3cz6_A DNA-binding protein RAP 26.2 64 0.0022 28.3 4.2 45 171-218 61-112 (168)
341 2h5n_A Hypothetical protein PG 26.1 1.2E+02 0.0042 24.9 6.0 39 354-392 34-74 (133)
342 1ffv_A CUTS, iron-sulfur prote 25.8 51 0.0017 28.7 3.6 27 2-29 5-31 (163)
343 1ntc_A Protein (nitrogen regul 25.6 21 0.00071 27.7 0.9 24 371-394 51-74 (91)
344 2zjd_A Microtubule-associated 25.5 1.6E+02 0.0055 24.6 6.5 58 15-75 57-119 (130)
345 2r2q_A Gamma-aminobutyric acid 25.4 1.8E+02 0.0063 23.3 6.7 57 15-74 48-108 (110)
346 2nvu_B Maltose binding protein 25.0 96 0.0033 33.3 6.3 60 13-73 714-789 (805)
347 3eye_A PTS system N-acetylgala 24.7 72 0.0025 27.9 4.3 21 351-371 123-143 (168)
348 1cuk_A RUVA protein; DNA repai 24.6 62 0.0021 29.1 4.0 25 359-383 160-184 (203)
349 4a6q_A Histone deacetylase com 24.0 2.3E+02 0.0077 24.2 7.2 64 12-77 55-140 (143)
350 3r8s_T 50S ribosomal protein L 24.0 1.3E+02 0.0046 23.6 5.4 41 10-53 27-68 (93)
351 1pqs_A Cell division control p 23.6 64 0.0022 24.6 3.3 36 12-50 3-43 (77)
352 2v1y_A Phosphatidylinositol-4, 23.4 98 0.0033 25.2 4.6 67 4-73 23-102 (108)
353 1kbh_B CREB-binding protein, n 22.9 31 0.0011 24.9 1.3 15 292-306 31-45 (59)
354 1vsq_C Mannose-specific phosph 22.7 91 0.0031 27.1 4.6 21 351-371 121-141 (165)
355 2kkc_A Sequestosome-1; P62, PB 22.2 1.5E+02 0.0051 23.8 5.4 54 21-76 42-101 (102)
356 2ylm_A Ubiquitin carboxyl-term 21.8 68 0.0023 33.1 4.2 70 3-75 133-217 (530)
357 1cuk_A RUVA protein; DNA repai 21.7 46 0.0016 30.0 2.5 25 173-200 160-184 (203)
358 3kxe_C Antitoxin protein PARD- 21.6 91 0.0031 24.3 3.9 39 352-390 7-47 (88)
359 3hk0_A Growth factor receptor- 21.6 1.5E+02 0.0051 27.6 6.2 57 3-61 11-73 (256)
360 2jp7_A MRNA export factor MEX6 21.0 1.5E+02 0.0051 21.2 4.7 38 355-392 2-40 (57)
361 2ktr_A Sequestosome-1; autopha 20.9 1.4E+02 0.0048 24.6 5.1 54 21-76 57-116 (117)
362 1g2h_A Transcriptional regulat 20.7 44 0.0015 23.8 1.8 23 371-394 21-43 (61)
363 2ba3_A NIKA; dimer, bacterial 20.7 97 0.0033 21.0 3.5 28 352-379 19-47 (51)
364 2ztd_A Holliday junction ATP-d 20.6 73 0.0025 29.0 3.6 24 360-383 165-188 (212)
365 1rm6_C 4-hydroxybenzoyl-COA re 20.5 62 0.0021 28.0 3.0 27 3-30 5-31 (161)
366 1eto_A FIS, factor for inversi 20.0 51 0.0017 26.1 2.2 23 372-394 59-81 (98)
No 1
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=100.00 E-value=1.3e-75 Score=588.58 Aligned_cols=353 Identities=37% Similarity=0.633 Sum_probs=247.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~~ 80 (403)
|+|+||+++|++|.|+|++++||.+||++|+.++++..+++++|||||+||+|+|+++|++|+|+++++|++|+.|.+..
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~~ 87 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAG 87 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCSS
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCCC
Confidence 89999999999999999999999999999999532212999999999999999999999999999999998887776654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 015628 81 SSGASTVSAAPANQAQTTSSAPPTSTQPTTTSQTPAPTVAPPQS-VPESAPPPAAPAPAPAPAPAPAPAPAPVSSSVSDV 159 (403)
Q Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (403)
+...+.++..+.+++++ + ++ ..+.+.+.++...+.+ .+.++...+.++. +|..++.. .+.......
T Consensus 88 ~~~~~~~~~~~~~~~~~--~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~~~~-~~~~~~~~~ 154 (368)
T 1oqy_A 88 QGTSAPPEASPTAAPES--S-TS-----FPPAPTSGMSHPPPAAREDKSPSEESAPTT----SPESVSGS-VPSSGSSGR 154 (368)
T ss_dssp SCCCCCSSCCCCCSSSC--C-CS-----CCCSSSCCCCCCCSSSSCCCCCSCSCCCCS----STTCSCCC-SCSCCCSCC
T ss_pred CCCCCCcccCCCCCccc--c-CC-----CCCCCCCCCCCCCccccccCCccccCCCCC----CCCccccc-ccccccccc
Confidence 43111111111110100 0 00 0000000000000000 0000000000000 11110000 011111234
Q ss_pred cccccccccCCccHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHcCCCCCCCCCccccccCCCCCCCCCCc
Q 015628 160 YGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPVARASAGGQAGNPPAQ 239 (403)
Q Consensus 160 ~~~~~s~l~~g~~~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~GIP~~~~~~~~~~~~~~~~~~~~~~~ 239 (403)
++.+.|+||+|+.++.+|++||+|| |+|++|++|||++|||||||||||++|||++.....+ ...+
T Consensus 155 ~~~~~s~l~~g~~~~~~i~~l~~MG---f~~~~~~~AL~a~~nn~~~A~e~L~~gip~~~~~~~~--------~~~~--- 220 (368)
T 1oqy_A 155 EEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHG--------SVQE--- 220 (368)
T ss_dssp CCCCCTTTCCTTTHHHHHHHHHTTT---CCSHHHHHHHHHSCSSTTHHHHTTTTSSTTCSSCCCC--------CCCC---
T ss_pred cccccccccCCcchHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCcccccccC--------Cccc---
Confidence 5667899999999999999999999 9999999999999999999999999999987432210 0000
Q ss_pred cccCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCchHHhhCcHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHH
Q 015628 240 TQAQQPAAPAPTSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLI 319 (403)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~l~~Lr~~pqf~~lR~~vq~NP~lL~~~lq~i~~~nP~l~~lI 319 (403)
.. + .+.. ++++++.++|+|||++|||++||++||+||++|++|||+|+++||+|+++|
T Consensus 221 ~~---~---~~~~----------------~~~~~~~~~l~~Lr~~pqf~~lR~~vq~nP~~l~~~lq~l~~~nP~l~~~I 278 (368)
T 1oqy_A 221 SQ---V---SEQP----------------ATEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQI 278 (368)
T ss_dssp CC---S---SCCC----------------CSSCCSCCTTHHHHHSHHHHHHHHSTTTCTTHHHHHHTTTTTTCHHHHHHH
T ss_pred cc---c---cccc----------------CccccccchHHHHhcChHHHHHHHHHHhChHHHHHHHHHHHhhCHHHHHHH
Confidence 00 0 0000 111234678999999999999999999999999999999999999999999
Q ss_pred HHcHHHHHHHhcCCCCCC-CCc----ccccc--cccCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHH
Q 015628 320 QEHQTDFLRLINEPVEGG-EGN----VLGQL--ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAAN 392 (403)
Q Consensus 320 ~~n~e~Fl~~l~~~~~~~-~g~----~~~~~--~~~~~~~~~lt~ee~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~ 392 (403)
++||++||+||+++++++ .+. +.+.. .......|+||+||+++|+||++|||+|++||+||++||||+++|+|
T Consensus 279 ~~n~~~Fl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~ee~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~ 358 (368)
T 1oqy_A 279 SRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAAN 358 (368)
T ss_dssp HHHHHHHHHHHHSCCCCSCSSCCCSSSSCCCSCCCTTCSSCCCCTTTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHH
T ss_pred HHCHHHHHHHHcCcccccccccccccccccccccCCccccccCCCcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999886421 110 00000 01123478999999999999999999999999999999999999999
Q ss_pred HHhccCCCCC
Q 015628 393 YLLDHMHEFE 402 (403)
Q Consensus 393 ~L~~~~~d~~ 402 (403)
|||+|++|+|
T Consensus 359 ~L~~~~~d~~ 368 (368)
T 1oqy_A 359 FLLSQNFDDE 368 (368)
T ss_dssp HHHHHHCCCC
T ss_pred HHhhCcCcCC
Confidence 9999988754
No 2
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=100.00 E-value=1.1e-38 Score=286.92 Aligned_cols=127 Identities=33% Similarity=0.565 Sum_probs=99.5
Q ss_pred CCCchHHhh-CcHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcCCCCCC------------CCc
Q 015628 274 GAGTLDFLR-NSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG------------EGN 340 (403)
Q Consensus 274 ~~~~l~~Lr-~~pqf~~lR~~vq~NP~lL~~~lq~i~~~nP~l~~lI~~n~e~Fl~~l~~~~~~~------------~g~ 340 (403)
++++|++|| ++|+|++||++||+||++|++|||+|+++||+|+++|++||++||+||+++..+. ++.
T Consensus 21 ~~~~l~~L~~~~Pqf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~qNqe~Fl~mLnep~~~~~~~m~~~~~~~~~g~ 100 (171)
T 2qsf_X 21 QGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGE 100 (171)
T ss_dssp -------CCCCHHHHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHHCHHHHHHHHHHCCC-----------------
T ss_pred ccCCHHHHHhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHhCcccchhhhhccccccccccc
Confidence 467799999 9999999999999999999999999999999999999999999999999875431 010
Q ss_pred ------ccccc-----cccCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015628 341 ------VLGQL-----ASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400 (403)
Q Consensus 341 ------~~~~~-----~~~~~~~~~lt~ee~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~~~d 400 (403)
..+.. +......|.+|+||+++|+||++|||+|+.||+||++|||||++|+||||++++|
T Consensus 101 ~~~~~~~~g~~~~~~~~~~~~~~i~~tpee~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~~~d 171 (171)
T 2qsf_X 101 DIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDHAD 171 (171)
T ss_dssp --------------------EECCCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC---
T ss_pred ccccccccccccccCCCCCCcccCCCCccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence 00000 0111247899999999999999999999999999999999999999999998765
No 3
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=99.83 E-value=2.3e-21 Score=150.27 Aligned_cols=62 Identities=44% Similarity=0.880 Sum_probs=58.7
Q ss_pred CCchHHhhCcHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcCCCCC
Q 015628 275 AGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG 336 (403)
Q Consensus 275 ~~~l~~Lr~~pqf~~lR~~vq~NP~lL~~~lq~i~~~nP~l~~lI~~n~e~Fl~~l~~~~~~ 336 (403)
.+++++||++|+|++||++||+||++|++||++|+++||+|+++|++||++|++||+++.++
T Consensus 3 ~~~l~~Lr~~Pqf~qlR~~vqqNP~lL~~lLqqL~~~NPqL~q~I~~n~e~Fl~ll~e~~~~ 64 (72)
T 1pve_A 3 HMPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQE 64 (72)
T ss_dssp TCTTGGGTTCTTTTTHHHHHTTCGGGHHHHHHHHHTTCHHHHHHHHTTHHHHHHHHHSCSCC
T ss_pred CchHHHHHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcCCccC
Confidence 45789999999999999999999999999999999999999999999999999999998653
No 4
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=99.82 E-value=1.6e-20 Score=141.34 Aligned_cols=59 Identities=46% Similarity=0.935 Sum_probs=56.5
Q ss_pred CchHHhhCcHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcCCC
Q 015628 276 GTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPV 334 (403)
Q Consensus 276 ~~l~~Lr~~pqf~~lR~~vq~NP~lL~~~lq~i~~~nP~l~~lI~~n~e~Fl~~l~~~~ 334 (403)
+++++||++|+|++||++||+||++|+++|++|+++||+|+++|++|||+|++||++++
T Consensus 2 ~~l~~Lr~~Pqf~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I~~n~e~Fl~ll~e~~ 60 (61)
T 2f4m_B 2 HPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 60 (61)
T ss_dssp CGGGGGTTCHHHHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHTSCC
T ss_pred chHHHHHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcccC
Confidence 46899999999999999999999999999999999999999999999999999998763
No 5
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.8e-19 Score=149.52 Aligned_cols=77 Identities=25% Similarity=0.402 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~~ 80 (403)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +|+++|||||+||+|+|+.+|++|||++|++|+|++++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSIS---CEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTT---SCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876644
No 6
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=4.4e-18 Score=139.22 Aligned_cols=78 Identities=45% Similarity=0.705 Sum_probs=73.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHH---hCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETV---QGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~---~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~ 77 (403)
|+|+||+++|+.|.++|++++||.+||++|+.. .| +|+++|||+|+||.|+|+++|++|||++|++|+|+++++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDA---FPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTT---CCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCC---CChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 899999999999999999999999999999999 67 999999999999999999999999999999999999876
Q ss_pred CCCC
Q 015628 78 KVSS 81 (403)
Q Consensus 78 k~~~ 81 (403)
+..+
T Consensus 78 ~~~~ 81 (95)
T 1uel_A 78 KAVS 81 (95)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5443
No 7
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.76 E-value=2.3e-18 Score=138.98 Aligned_cols=80 Identities=34% Similarity=0.492 Sum_probs=72.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~~ 80 (403)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+.+|++|+|+++++|+|+++.++..
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999987755
Q ss_pred CCC
Q 015628 81 SSG 83 (403)
Q Consensus 81 ~~~ 83 (403)
...
T Consensus 78 ~~~ 80 (88)
T 4fbj_B 78 GLR 80 (88)
T ss_dssp ---
T ss_pred CCC
Confidence 433
No 8
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.75 E-value=2.3e-18 Score=138.85 Aligned_cols=75 Identities=28% Similarity=0.380 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+++|++|.|+|++++||.+||++|+.++| +|+++|||+|+||.|+|+.+|++|+| ++++|||+++.+..
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999 89999999986543
No 9
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=134.61 Aligned_cols=74 Identities=24% Similarity=0.320 Sum_probs=71.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~ 77 (403)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+||.|+|+.+|++|+|+++++|+|+++.+
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcC---CCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999999865
No 10
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.74 E-value=7.1e-18 Score=134.17 Aligned_cols=76 Identities=36% Similarity=0.640 Sum_probs=69.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHH---hCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETV---QGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~---~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~ 77 (403)
|+|+||+++|+.|.++|++++||.+||++|+.. .| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++++
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDA---FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTT---CCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccC---CCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 67 999999999999999999999999999999999999876
Q ss_pred CC
Q 015628 78 KV 79 (403)
Q Consensus 78 k~ 79 (403)
++
T Consensus 83 ~~ 84 (85)
T 2wyq_A 83 KA 84 (85)
T ss_dssp --
T ss_pred CC
Confidence 53
No 11
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.73 E-value=4.5e-18 Score=140.62 Aligned_cols=74 Identities=27% Similarity=0.459 Sum_probs=69.1
Q ss_pred CEEEEEeCCCcEEEE--EeCCCCcHHHHHHHH-HHHhCCCCCCCCCcEEEeCCeecCCCCccccccc-CCCcEEEEEEec
Q 015628 1 MKVFVKTLKGTHFEI--EVKPEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~g~~~~i--eV~~~~TV~dLK~kI-~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI-~~~s~I~v~v~k 76 (403)
|+|+||+++|++|.+ +|++++||.+||++| +...| +|+++|||||+||+|+|+.+|++|+| ++|++|+||+++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSC---SCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcC---CChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998777 566999999999999 77778 99999999999999999999999999 999999999987
Q ss_pred C
Q 015628 77 S 77 (403)
Q Consensus 77 ~ 77 (403)
+
T Consensus 97 p 97 (98)
T 4a20_A 97 N 97 (98)
T ss_dssp C
T ss_pred C
Confidence 5
No 12
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.73 E-value=7.9e-18 Score=136.36 Aligned_cols=74 Identities=39% Similarity=0.646 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~ 77 (403)
|+|+||+++|++|.|+|++++||.+||++|+.++| +|+++|||+|+||.|+|+.+|++|||++|++|+|+++.+
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999998764
No 13
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.73 E-value=6.6e-18 Score=135.49 Aligned_cols=72 Identities=36% Similarity=0.517 Sum_probs=70.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCee-cCCCCcccccccCCCcEEEEEEe
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV-LKDVTTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~Gki-L~D~~tLsd~gI~~~s~I~v~v~ 75 (403)
|+|+||+++|+.+.++|++++||.+||++|+...| +|+++|||+|+||. |+|+++|++|+|+++++|+|+++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQH---IPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 89999999999999999999999999999999999 99999999999999 99999999999999999999875
No 14
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.72 E-value=9.3e-18 Score=136.84 Aligned_cols=71 Identities=27% Similarity=0.379 Sum_probs=68.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v 74 (403)
|+|+||++.|+++.|+|++++||.+||++|+++.| +|+++|||+|+||+|+|+.+|++|+|++|++|+|+-
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~G---ip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIG---TQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhC---CCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 68999999999999999999999999999999999 999999999999999999999999999999999863
No 15
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.72 E-value=2e-17 Score=134.80 Aligned_cols=77 Identities=36% Similarity=0.589 Sum_probs=73.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~~ 80 (403)
|+|+||+++|+.|.|+|++++||.+||++|++.+| +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999877643
No 16
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=5.3e-18 Score=137.21 Aligned_cols=73 Identities=29% Similarity=0.457 Sum_probs=68.9
Q ss_pred CEEEEEeCCCcEEEEEeC--CCCcHHHHHHHH-HHHhCCCCCCCCCcEEEeCCeecCCCCccccccc-CCCcEEEEEEec
Q 015628 1 MKVFVKTLKGTHFEIEVK--PEDKVSDVKKNI-ETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~--~~~TV~dLK~kI-~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI-~~~s~I~v~v~k 76 (403)
|+|+||+++|++|.|+|+ +++||.+||++| +...| +|+++|||||+||+|+|+.+|++|+| .++++|+|++++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSC---SSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcC---CChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999988755 999999999999 88889 99999999999999999999999999 699999999875
No 17
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=3e-17 Score=136.86 Aligned_cols=76 Identities=26% Similarity=0.324 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~~ 80 (403)
|+|+||+++|+ |.|+|++++||.+||++|+.++| +++++|||+|+||+|+|+++|++|+|+++++|+|+++++...
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 93 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHT---CCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence 78999999886 79999999999999999999999 999999999999999999999999999999999999876543
No 18
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.2e-17 Score=135.83 Aligned_cols=75 Identities=36% Similarity=0.577 Sum_probs=72.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|++|.|+|++++||.+||++|+.+++ +|+++|||+|+||+|+|+++|++|+|+++++|+|+++.+.
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998764
No 19
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.71 E-value=3.4e-17 Score=126.76 Aligned_cols=75 Identities=36% Similarity=0.550 Sum_probs=71.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+.+|++|+|+++++|+|+++.+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998653
No 20
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.71 E-value=1.7e-17 Score=132.61 Aligned_cols=75 Identities=36% Similarity=0.546 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|++|.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+.+|++|+|+++++|+|+++.+.
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998654
No 21
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=2.5e-17 Score=137.57 Aligned_cols=77 Identities=19% Similarity=0.364 Sum_probs=73.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~~ 80 (403)
|+|+||+++|+.|.|+|++++||.+||++|+.+.| +++++|||+|+||.|+|+++|++|||++|++|||++++++..
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~~ 100 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEG---VEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQN 100 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTC---CCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999999876654
No 22
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3.1e-17 Score=128.54 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=70.2
Q ss_pred CEEEEEeCCCcEE-EEE-eCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEec
Q 015628 1 MKVFVKTLKGTHF-EIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~g~~~-~ie-V~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k 76 (403)
|+|+||+++|+.+ .++ |++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||+++++|+|+++.
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~g---ip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFH---VEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999985 899 9999999999999999999 99999999999999999999999999999999999875
No 23
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.70 E-value=5.7e-17 Score=125.47 Aligned_cols=75 Identities=37% Similarity=0.601 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+.+|+.+.++|++++||.+||++|++..| +|+++|||+|+||.|+|+.+|++|+|+++++|+|+++.++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 75 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998653
No 24
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=1.6e-17 Score=137.53 Aligned_cols=71 Identities=17% Similarity=0.281 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v 74 (403)
|+|+||++.|+++.|+|++++||.+||++|+++.| +|+++|||||+||+|+|+.+|++|+|+++++|+|+.
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~G---ip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTG---TRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999864
No 25
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.5e-17 Score=128.08 Aligned_cols=73 Identities=27% Similarity=0.424 Sum_probs=70.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEec
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k 76 (403)
|+|+||+++|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+.+|++|||++|++|+|+++.
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLN---VPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999875
No 26
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3.5e-17 Score=129.88 Aligned_cols=76 Identities=36% Similarity=0.546 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+++|+++.|+|++++||.+||++|+++++ +|+++|||+|+||.|+|+.+|++|+|+++++|+|+++.+..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987653
No 27
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=7.4e-17 Score=129.61 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=72.5
Q ss_pred CEEEEEeCCC-cEEEE-EeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015628 1 MKVFVKTLKG-THFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~g-~~~~i-eV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++| +++.| +|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFD---VRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSC---CCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHC---cChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 7999999999 79999 59999999999999999999 9999999999999999999999999999999999998765
Q ss_pred CC
Q 015628 79 VS 80 (403)
Q Consensus 79 ~~ 80 (403)
..
T Consensus 85 G~ 86 (89)
T 1wy8_A 85 GP 86 (89)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 28
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=5.7e-17 Score=128.45 Aligned_cols=76 Identities=37% Similarity=0.577 Sum_probs=73.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+++|+++.|+|++++||.+||++|+++++ +|+++|||+|+||.|+|+.+|++|+|+++++|+|+++.+..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999999999999987653
No 29
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.69 E-value=4.4e-17 Score=130.79 Aligned_cols=71 Identities=30% Similarity=0.411 Sum_probs=68.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEe
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~ 75 (403)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+.+|++||| +|++|||++|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 78999999999999999999999999999999999 99999999999999999999999999 8999999875
No 30
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=6.5e-17 Score=131.55 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=71.1
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCcHHHHHHHHHHHh--CCCCCCCCCcEEEeCCeecCCCCccccc--ccCCCcEEEEEE
Q 015628 1 MKVFVKTLKGT--HFEIEVKPEDKVSDVKKNIETVQ--GSDVYPASQQMLIHQGKVLKDVTTLEEN--KVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~g~--~~~ieV~~~~TV~dLK~kI~~~~--g~~~ip~~~QkLiy~GkiL~D~~tLsd~--gI~~~s~I~v~v 74 (403)
|+|+||+.+|+ .+.|+|++++||.+||++|+..+ + +++++|||||+||+|+|+.+|++| +|+++++|||++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~---i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPER---PRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTC---CCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCC---CChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 79999999998 67788889999999999999998 8 999999999999999999999999 999999999998
Q ss_pred ecCCCC
Q 015628 75 TKSKVS 80 (403)
Q Consensus 75 ~k~k~~ 80 (403)
+.+...
T Consensus 85 ~~~gg~ 90 (93)
T 1wgd_A 85 NVKSGP 90 (93)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 31
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.69 E-value=3.9e-17 Score=131.65 Aligned_cols=75 Identities=24% Similarity=0.310 Sum_probs=70.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~g 79 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTC---SCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC---
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998654
No 32
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=7.6e-17 Score=128.86 Aligned_cols=76 Identities=29% Similarity=0.446 Sum_probs=72.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+++|+.+.++|++++||.+||++|++..+ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQG---LPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTC---CCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhC---CChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999987653
No 33
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=7.2e-17 Score=130.18 Aligned_cols=75 Identities=33% Similarity=0.604 Sum_probs=69.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|+++.++|++++||.+||++|++..| +|+++|||+|+||.|+|+.+|++|+|+++++|+|+++.+.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~G 84 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 84 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999988664
No 34
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.69 E-value=4.3e-17 Score=128.14 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|+++.++|++++||.+||++|+++.| +|+++|||+|+|+.|+|+++|++|+|+++++|+|+++.++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~g---i~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998653
No 35
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=1e-16 Score=130.83 Aligned_cols=74 Identities=27% Similarity=0.300 Sum_probs=68.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCC-CcccccccCCCcEEEEEEecCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~-~tLsd~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+++|+.|.|+|++++||.+||++|+.. . +++|||||+||.|+|+ ++|++|+|+++++|||++++++.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~-----~-~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPG-----Q-ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSS-----T-TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhh-----C-cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 789999999999999999999999999999776 3 7899999999999999 99999999999999999987654
Q ss_pred C
Q 015628 80 S 80 (403)
Q Consensus 80 ~ 80 (403)
.
T Consensus 82 ~ 82 (95)
T 1wia_A 82 A 82 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 36
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=3.8e-17 Score=136.64 Aligned_cols=77 Identities=22% Similarity=0.234 Sum_probs=70.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC---------------CCcEEEeCCeecC-CCCccccccc
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA---------------SQQMLIHQGKVLK-DVTTLEENKV 64 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~---------------~~QkLiy~GkiL~-D~~tLsd~gI 64 (403)
|+|+||+++|++|.|+|++++||.+||++|+++.+ +++ +.|+|||+||+|. |+++|++|||
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~---i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQ---LKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHH---HHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 89999999999999999999999999999999998 766 4679999999996 5699999999
Q ss_pred CCCcEEEEEEecCCCC
Q 015628 65 AENSFVVVMLTKSKVS 80 (403)
Q Consensus 65 ~~~s~I~v~v~k~k~~ 80 (403)
+++++|||+++.+...
T Consensus 85 ~~g~~l~lv~~lr~~~ 100 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQKS 100 (105)
T ss_dssp CSSEEEEEEECSCSCC
T ss_pred CCCCEEEEEehhccCC
Confidence 9999999999887653
No 37
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.68 E-value=1.2e-16 Score=130.71 Aligned_cols=75 Identities=31% Similarity=0.370 Sum_probs=71.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCC-CcccccccCCCcEEEEEEecCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~-~tLsd~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+++| ++.|+|++++||.+||++|+.+.| +|+++|||+|+||+|+|+ ++|++|+|+++++|+|+++.+..
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVEN---TPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSS---SCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 6899999988 899999999999999999999999 999999999999999999 99999999999999999987654
No 38
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.67 E-value=9e-17 Score=132.05 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|+++.|+|++++||.+||++|+.+.| +|+++|||||+|+.|+|+.+|++|+|+++++|+|+++.++
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~g---ip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998754
No 39
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.67 E-value=2.1e-16 Score=123.08 Aligned_cols=71 Identities=30% Similarity=0.517 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEe
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~ 75 (403)
|+|+||+ +|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+.+|++|||++|++|+|+.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhC---CCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 6899999 999999999999999999999999999 9999999999999999999999999999999999864
No 40
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.7e-16 Score=131.43 Aligned_cols=73 Identities=19% Similarity=0.132 Sum_probs=65.5
Q ss_pred EEEEEeCC----CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015628 2 KVFVKTLK----GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 2 kI~VKtl~----g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~ 77 (403)
.|.|+..+ +++|.|+|++++||.+||++|+++.| +|+++|||||+||+|+|+++|++|+|+++++|+||+ .+
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~g---ip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~-lr 92 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFG---LQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLE-LK 92 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTT---CCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEEC-CC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHC---cCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEE-EC
Confidence 36677766 77899999999999999999999999 999999999999999999999999999999995554 44
Q ss_pred C
Q 015628 78 K 78 (403)
Q Consensus 78 k 78 (403)
.
T Consensus 93 g 93 (100)
T 1wju_A 93 Q 93 (100)
T ss_dssp C
T ss_pred C
Confidence 3
No 41
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.67 E-value=1.8e-16 Score=133.51 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|+.|.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---CChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 79999999999999999999999999999999999 9999999999999999999999999999999999998754
No 42
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.67 E-value=2.8e-16 Score=128.92 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+.+|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+.+|++|||+++++|+|+++.+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---i~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~g 75 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998764
No 43
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=2.4e-16 Score=130.70 Aligned_cols=76 Identities=20% Similarity=0.334 Sum_probs=69.9
Q ss_pred CEEEEEeCCC----cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCC-CcccccccCCCcEEEEEEe
Q 015628 1 MKVFVKTLKG----THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDV-TTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 1 MkI~VKtl~g----~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~-~tLsd~gI~~~s~I~v~v~ 75 (403)
|+|+||+..+ ++|.|+|++++||.+||++|+.++| +|+++|||+|+||.|+|+ ++|++|+|+++++|+|+++
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESG---VPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTC---CCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHC---cChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 7899999754 7999999999999999999999999 999999999999999988 6999999999999999987
Q ss_pred cCCC
Q 015628 76 KSKV 79 (403)
Q Consensus 76 k~k~ 79 (403)
.+..
T Consensus 85 ~~gg 88 (102)
T 1v5o_A 85 DNVG 88 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 44
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=1.1e-16 Score=130.74 Aligned_cols=75 Identities=27% Similarity=0.322 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+. |+.|.|+|++++||.+||++|+...+ +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLH---CNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTC---SCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 78999998 99999999999999999999999999 99999999999999999999999999999999999887653
No 45
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.66 E-value=1.5e-17 Score=119.35 Aligned_cols=47 Identities=53% Similarity=0.905 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCCC
Q 015628 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 402 (403)
Q Consensus 356 t~ee~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~~~d~~ 402 (403)
|+||.++|+||++|||+|.+||+||++|+||+++|+||||+++.|++
T Consensus 1 ~~~e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~d~~ 47 (47)
T 1dv0_A 1 GSQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 47 (47)
T ss_dssp --CCHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCCCCC
T ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcCCCC
Confidence 68899999999999999999999999999999999999999987753
No 46
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=2.9e-16 Score=130.04 Aligned_cols=74 Identities=30% Similarity=0.353 Sum_probs=70.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+. |+.+.|+|++++||.+||++|+...| +|+++|||+|+||+|+|+++|++|||++|++|+|+++++.
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFK---SHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHT---CCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999998 88999999999999999999999999 9999999999999999999999999999999999987654
No 47
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.47 E-value=7.5e-18 Score=131.29 Aligned_cols=75 Identities=27% Similarity=0.408 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+.+|+++.++|++++||.+||++|+...| +|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++.++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQG---VPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998653
No 48
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=3.2e-16 Score=134.94 Aligned_cols=76 Identities=29% Similarity=0.329 Sum_probs=69.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~~ 80 (403)
|+|+||++ |+.|.|+|++++||.+||++|+.++| +++++|||||+||+|+|+++|++|+|+++++|+|+++++...
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFK---SQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHC---SCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHC---cCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 78999998 99999999999999999999999999 999999999999999999999999999999999999876543
No 49
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=2.4e-16 Score=130.42 Aligned_cols=75 Identities=27% Similarity=0.324 Sum_probs=70.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+++|+ +.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 78999999886 79999999999999999999999 99999999999999999999999999999999999986553
No 50
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=7e-16 Score=131.14 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=65.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCC---CC--CCCCcEEEeCCeecCCCCcccccccCCCc--EEEEE
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD---VY--PASQQMLIHQGKVLKDVTTLEENKVAENS--FVVVM 73 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~---~i--p~~~QkLiy~GkiL~D~~tLsd~gI~~~s--~I~v~ 73 (403)
|+|+||+++|+++.|+|++++||.+||++|+...+++ .+ ++++|||||.||+|+|+.+|++|+|+.++ +|||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 7899999999999999999999999999999943221 13 69999999999999999999999998775 45556
Q ss_pred Eec
Q 015628 74 LTK 76 (403)
Q Consensus 74 v~k 76 (403)
++.
T Consensus 97 lr~ 99 (116)
T 1wgh_A 97 ARE 99 (116)
T ss_dssp ECS
T ss_pred ccC
Confidence 554
No 51
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.64 E-value=3.9e-16 Score=127.25 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=69.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+ |+.+.|+|++++||.+||++|+++.| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G 92 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEG---IAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG 92 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHT---CCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhC---cChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 7999997 89999999999999999999999999 9999999999999999999999999999999999988653
No 52
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.64 E-value=1e-15 Score=138.26 Aligned_cols=77 Identities=35% Similarity=0.549 Sum_probs=73.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~~ 80 (403)
|+|+||+++|+++.|+|++++||.+||++|+.+.| +|+++|||+|+||.|+|+++|++|+|+++++|||+++.++..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999977643
No 53
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=5.4e-16 Score=127.40 Aligned_cols=72 Identities=21% Similarity=0.276 Sum_probs=67.4
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015628 1 MKVFVKTLKGTHF-EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 1 MkI~VKtl~g~~~-~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~ 77 (403)
|+|+|| +.|+.| .|+|++++||.+||++|++.+| +|+++|||+|+||+|+|+ +|++|+|+++++|+||.+..
T Consensus 8 m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tg---ip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTG---VQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTC---CCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 689999 578999 6999999999999999999999 999999999999999999 99999999999999997643
No 54
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.63 E-value=2.3e-16 Score=114.18 Aligned_cols=49 Identities=57% Similarity=1.000 Sum_probs=47.1
Q ss_pred cccCCccHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHcCCCC
Q 015628 166 NLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 217 (403)
Q Consensus 166 ~l~~g~~~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~GIP~ 217 (403)
+|++|+.+++.|++|++|| |+|++|++|||+++||++||||||++|||+
T Consensus 1 ~~~~~~~~~~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~e~L~~gip~ 49 (49)
T 1ify_A 1 TLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPG 49 (49)
T ss_dssp CCCCSHHHHHHHHHHHHTT---CCHHHHHHHHHTTTSCSHHHHHHHHHCCCC
T ss_pred CCCCCccCHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 4789999999999999999 999999999999999999999999999995
No 55
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=8.5e-16 Score=128.48 Aligned_cols=74 Identities=23% Similarity=0.152 Sum_probs=68.4
Q ss_pred CEEEEEeCCC---cEEEEEeC--------C-CCcHHHHHHHHHHHh--CCCCCCCCC-cEEEeCCeecCCCCcccccccC
Q 015628 1 MKVFVKTLKG---THFEIEVK--------P-EDKVSDVKKNIETVQ--GSDVYPASQ-QMLIHQGKVLKDVTTLEENKVA 65 (403)
Q Consensus 1 MkI~VKtl~g---~~~~ieV~--------~-~~TV~dLK~kI~~~~--g~~~ip~~~-QkLiy~GkiL~D~~tLsd~gI~ 65 (403)
|+|+||+.++ ++|.|+|+ + ++||.+||++|+.+. | +|+++ |||||+||+|+|+++|++|+|+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~g---ip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQES---VPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTT---CCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccC---CChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 7899999999 89999954 4 499999999999999 8 99999 9999999999999999999999
Q ss_pred CCcEEEEEEecC
Q 015628 66 ENSFVVVMLTKS 77 (403)
Q Consensus 66 ~~s~I~v~v~k~ 77 (403)
++++|||+++.+
T Consensus 90 ~g~~i~lv~~~~ 101 (107)
T 1x1m_A 90 PGSTVHVLRKSW 101 (107)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCEEEEEeCCC
Confidence 999999998754
No 56
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=127.80 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|+.+.++|++++||.+||++|+...| +++++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998654
No 57
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.5e-15 Score=127.22 Aligned_cols=76 Identities=33% Similarity=0.522 Sum_probs=72.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~ 79 (403)
++|+||+++|+.+.++|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 58999999999999999999999999999999999 99999999999999999999999999999999999987654
No 58
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.61 E-value=4.2e-16 Score=129.23 Aligned_cols=72 Identities=29% Similarity=0.517 Sum_probs=68.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEec
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k 76 (403)
|+|+||+ +|+.|.|+|++++||.+||++|++++| +|+++|||+|+||.|+|+.+|++|||++|++|+|+++.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHS---CCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 5688897 899999999999999999999999999 99999999999999999999999999999999999764
No 59
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=2.4e-15 Score=121.95 Aligned_cols=73 Identities=29% Similarity=0.408 Sum_probs=67.1
Q ss_pred CEEEEEeCCCcEEEEEeCCC-----CcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCC-CCcccccccCCCcEEEEEE
Q 015628 1 MKVFVKTLKGTHFEIEVKPE-----DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKD-VTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~-----~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D-~~tLsd~gI~~~s~I~v~v 74 (403)
|+|+||+ .|+.|.|+|+++ +||.+||++|+..+| +|+++|||+|+||.|+| +++|++|+|+++++|+|+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIG---VPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHC---cCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 6899997 588999999985 999999999999999 99999999999999998 6689999999999999997
Q ss_pred ecC
Q 015628 75 TKS 77 (403)
Q Consensus 75 ~k~ 77 (403)
+..
T Consensus 84 ~~~ 86 (92)
T 1wxv_A 84 KKN 86 (92)
T ss_dssp CCS
T ss_pred cCC
Confidence 543
No 60
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.61 E-value=1.5e-15 Score=130.62 Aligned_cols=79 Identities=16% Similarity=0.261 Sum_probs=67.6
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCcHHHHHHHHHHHhCC--CCCCC--CCcEEEeCCeecCCCCcccccccCCC------cE
Q 015628 1 MKVFVKTLKGTHF-EIEVKPEDKVSDVKKNIETVQGS--DVYPA--SQQMLIHQGKVLKDVTTLEENKVAEN------SF 69 (403)
Q Consensus 1 MkI~VKtl~g~~~-~ieV~~~~TV~dLK~kI~~~~g~--~~ip~--~~QkLiy~GkiL~D~~tLsd~gI~~~------s~ 69 (403)
|+|+||+++|+.| .+++++++||.+||++|+...+. ..+|+ ++|||||+||+|+|+++|++|+|.++ .+
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999998 69999999999999999765431 12776 79999999999999999999999998 56
Q ss_pred EEEEEecCCC
Q 015628 70 VVVMLTKSKV 79 (403)
Q Consensus 70 I~v~v~k~k~ 79 (403)
|||+++.+..
T Consensus 97 mhlVlrl~g~ 106 (126)
T 1se9_A 97 MHVIIQAPVT 106 (126)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeccCCc
Confidence 8888776643
No 61
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=131.42 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=65.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHH------HhCCCCC--CCCCcEEEeCCeecCCCCcccccccCCCcE--E
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIET------VQGSDVY--PASQQMLIHQGKVLKDVTTLEENKVAENSF--V 70 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~------~~g~~~i--p~~~QkLiy~GkiL~D~~tLsd~gI~~~s~--I 70 (403)
|+|+||+++|+++.|+|++++||.+||++|+. +.+ + ++++|||||+||+|+|+++|++|+|+++++ |
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~---ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEE---QVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCC---TTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccC---CCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 68999999999999999999999999999998 445 5 489999999999999999999999998875 5
Q ss_pred EEEEecC
Q 015628 71 VVMLTKS 77 (403)
Q Consensus 71 ~v~v~k~ 77 (403)
+|+++.+
T Consensus 95 hlv~r~~ 101 (125)
T 2gow_A 95 HLVARET 101 (125)
T ss_dssp EEEECSC
T ss_pred EEEecCC
Confidence 5555543
No 62
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.60 E-value=2e-15 Score=122.37 Aligned_cols=72 Identities=25% Similarity=0.409 Sum_probs=68.3
Q ss_pred CEEEEEeCCCcEEEE-EeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE---eCCeecCCCCcccccccCCCcEEEEEEec
Q 015628 1 MKVFVKTLKGTHFEI-EVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~g~~~~i-eV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLi---y~GkiL~D~~tLsd~gI~~~s~I~v~v~k 76 (403)
|+|+||. .|++|.| +|++++||.+||++|++++| +|+++|||+ |+||+|+|+.+|++|+|+++++|+||.+.
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~g---ip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTG---VLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTC---CCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 7899995 8899999 99999999999999999999 999999999 99999999999999999999999999753
No 63
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.60 E-value=8.4e-16 Score=127.19 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=64.2
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCcHHHHHHHHHHHh-CCCCCCCCCcEEEeCCeecCCCCccccc--ccCCCcEEEEE
Q 015628 1 MKVFVKTLKGT--HFEIEVKPEDKVSDVKKNIETVQ-GSDVYPASQQMLIHQGKVLKDVTTLEEN--KVAENSFVVVM 73 (403)
Q Consensus 1 MkI~VKtl~g~--~~~ieV~~~~TV~dLK~kI~~~~-g~~~ip~~~QkLiy~GkiL~D~~tLsd~--gI~~~s~I~v~ 73 (403)
|+|+||+++|+ .+.|+|++++||.+||++|+.+. |. .|+++|||||+||+|+|+++|++| +|+++++|+|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~--pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSK--PLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTC--CCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCC--CChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 67899999999999999999874 51 446999999999999999999999 99999999874
No 64
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.60 E-value=1.9e-15 Score=134.08 Aligned_cols=76 Identities=24% Similarity=0.292 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.++.
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHC---CCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999987753
No 65
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.60 E-value=1.1e-15 Score=130.02 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=67.8
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccC-------CCcEEEE
Q 015628 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVA-------ENSFVVV 72 (403)
Q Consensus 1 MkI~VKtl~g~-~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~-------~~s~I~v 72 (403)
|.++|+.+.++ ++.|+|++++||.+||++|+.+.| +|+++|||||+||+|+|+++|++|||+ .+++|+|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~eg---IP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L 77 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhC---CCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEE
Confidence 78888887776 589999999999999999999999 999999999999999999999999999 6999999
Q ss_pred EEe
Q 015628 73 MLT 75 (403)
Q Consensus 73 ~v~ 75 (403)
+++
T Consensus 78 ~lr 80 (118)
T 2fnj_B 78 AFR 80 (118)
T ss_dssp EEB
T ss_pred Eec
Confidence 998
No 66
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.60 E-value=1.4e-15 Score=129.18 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=69.1
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCC-------CcEEEE
Q 015628 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAE-------NSFVVV 72 (403)
Q Consensus 1 MkI~VKtl~g~-~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~-------~s~I~v 72 (403)
|.|+|+...++ ++.++|++++||.+||++|+.+.| +|+++|||||+||+|+|+++|++|||++ +++|+|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~g---iPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~L 77 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHC---CCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEE
Confidence 78888887777 688999999999999999999999 9999999999999999999999999999 999999
Q ss_pred EEec
Q 015628 73 MLTK 76 (403)
Q Consensus 73 ~v~k 76 (403)
+++.
T Consensus 78 vlr~ 81 (118)
T 4ajy_B 78 AFRA 81 (118)
T ss_dssp EECC
T ss_pred EEec
Confidence 9985
No 67
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.59 E-value=1.8e-15 Score=127.09 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=72.1
Q ss_pred CEEEEEeC---CCcEEEEEeCC-CCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEec
Q 015628 1 MKVFVKTL---KGTHFEIEVKP-EDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl---~g~~~~ieV~~-~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k 76 (403)
|+|+||+. +|+.+.++|++ ++||.+||++|+..+| +|+++|||+|+|++|+|+.+|++|+|+++++|+|+++.
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQ---IPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTT---CCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 68999998 89999999998 9999999999999999 99999999999999999999999999999999999987
Q ss_pred CCC
Q 015628 77 SKV 79 (403)
Q Consensus 77 ~k~ 79 (403)
+..
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 68
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.59 E-value=4.4e-15 Score=119.13 Aligned_cols=70 Identities=24% Similarity=0.436 Sum_probs=66.4
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEe
Q 015628 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~ 75 (403)
+++++++|+.|.|+|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|++|++|+|+++
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITN---VLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHC---CCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 567778999999999999999999999999999 9999999999999999999999999999999999864
No 69
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.59 E-value=3.6e-15 Score=134.20 Aligned_cols=74 Identities=38% Similarity=0.618 Sum_probs=71.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~ 77 (403)
|+|+||+++|+++.|+|++++||.+||++|+.++| +|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~ 94 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 94 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCccccccCCHhHcCCcccceeeeeeccc
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999999764
No 70
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=1.7e-15 Score=124.02 Aligned_cols=71 Identities=23% Similarity=0.365 Sum_probs=65.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEec
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k 76 (403)
|+|+|| +.|++|.|+|++++||.+||++|+.++| +|+++|||+|+||+| |+.+|++|+|+++++|+||.++
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tg---ip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITG---LPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHC---SCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecc
Confidence 678998 6789999999999999999999999999 999999999999999 5559999999999999998754
No 71
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.58 E-value=3e-15 Score=137.44 Aligned_cols=77 Identities=35% Similarity=0.543 Sum_probs=73.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~~ 80 (403)
|+|+||+++|++|.|+|++++||.+||++|+.+.| +|+++|||+|+|++|+|+.+|++|+|+++++|+|+++.+...
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~g---Ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~ 182 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccC---CCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876543
No 72
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.58 E-value=4.7e-15 Score=131.49 Aligned_cols=73 Identities=30% Similarity=0.420 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE-e-CCeecCCCCcccccccCCCcEEEEEEec
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-H-QGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLi-y-~GkiL~D~~tLsd~gI~~~s~I~v~v~k 76 (403)
|+|+||+++|++|.++|++++||.+||++|+...| +|+++|||+ | +|+.|+|+.+|++|+|+++++|+|+++.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~ 77 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIG---VHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK 77 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHC---CCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccC
Confidence 89999999999999999999999999999999999 999999999 9 7999999999999999999999999873
No 73
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.57 E-value=6.9e-15 Score=122.72 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=68.4
Q ss_pred CEEEEEeCCC--cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCccccccc-CCCcEEEEEEec
Q 015628 1 MKVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKV-AENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~g--~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI-~~~s~I~v~v~k 76 (403)
|+|+|++..+ .++.|+|++++||.+||++|++++| +|++.|||||+|++|+|+++|.+||| ++|++|+|++-.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~G---ipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYG---FPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhC---CCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899999885 6899999999999999999999999 99999999999999999999999999 599999999853
No 74
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.56 E-value=2.7e-16 Score=135.58 Aligned_cols=76 Identities=36% Similarity=0.555 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+++|++|.|+|++++||.+||.+|+...| +|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++.++.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---cChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987654
No 75
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.54 E-value=1.9e-14 Score=125.68 Aligned_cols=73 Identities=38% Similarity=0.627 Sum_probs=70.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEec
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k 76 (403)
|+|+||+++|+.+.++|++++||.+||++|+..+| +|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+.+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999864
No 76
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=122.50 Aligned_cols=73 Identities=25% Similarity=0.282 Sum_probs=67.1
Q ss_pred EEEEE-eCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015628 2 KVFVK-TLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 2 kI~VK-tl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~ 77 (403)
.|+|+ ...++.+.++++++.||++||++|+...+ +|++.|+|||+||+|+|+.+|++|||++|.+|||+++..
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~---iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~ 90 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLG---IPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFST 90 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHT---CCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEES
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhC---CChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecC
Confidence 45555 55688999999999999999999999999 999999999999999999999999999999999999763
No 77
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.53 E-value=2.5e-14 Score=124.82 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=72.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+++|+.+.++|++++||.+||++|+.+.| +|+++|+|+|+||.|+|+++|++|+|+++++|+|+++.++
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 151 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 68999999999999999999999999999999999 9999999999999999999999999999999999998764
No 78
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=130.31 Aligned_cols=75 Identities=37% Similarity=0.605 Sum_probs=69.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k 78 (403)
|.|+||+++|+++.++|++++||.+||++|+.+.| +|+++|+|+|+|+.|+|+++|.+|+|+++++|+|+++.++
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrg 171 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 171 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC----
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhC---CCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999998654
No 79
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.53 E-value=3e-14 Score=120.44 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=69.6
Q ss_pred CEEEEEeC----------CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEE
Q 015628 1 MKVFVKTL----------KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFV 70 (403)
Q Consensus 1 MkI~VKtl----------~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I 70 (403)
++|+|+.. +|+++.|+|++++||.+||++|+...| +|+++|||+|+|+.|+|+.+|++|+|+++++|
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATG---MPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSS---CCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHC---CChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 35777764 578999999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 015628 71 VVMLTKSKV 79 (403)
Q Consensus 71 ~v~v~k~k~ 79 (403)
+|+++.+..
T Consensus 103 ~lv~rl~GG 111 (115)
T 1we7_A 103 HLALKERSG 111 (115)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999987654
No 80
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.52 E-value=1.3e-15 Score=135.31 Aligned_cols=77 Identities=35% Similarity=0.549 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~~ 80 (403)
|+|+||+++|+++.|+|++++||.+||.+|+...| +|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++.+...
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999876543
No 81
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.5e-14 Score=117.01 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=63.2
Q ss_pred CEEEEEeCCCcEE--EE-EeCCCCcHHHHHHHHHHH-hCCCCCCCCCcEEEeC--CeecCCCCcccccccCCCcEEEE
Q 015628 1 MKVFVKTLKGTHF--EI-EVKPEDKVSDVKKNIETV-QGSDVYPASQQMLIHQ--GKVLKDVTTLEENKVAENSFVVV 72 (403)
Q Consensus 1 MkI~VKtl~g~~~--~i-eV~~~~TV~dLK~kI~~~-~g~~~ip~~~QkLiy~--GkiL~D~~tLsd~gI~~~s~I~v 72 (403)
|+|+||+++|+.+ .| +|++++||.+||++|++. .| +++++|||+|. ||+|+|+++|++|+|+++++|+|
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~---i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQ---WYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSS---SCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcC---CChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7999999998775 58 999999999999999995 67 99999999976 99999999999999999999765
No 82
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=4.6e-14 Score=116.92 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=65.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEe--CCeecCCCCcccccccCCCcEEEEEEe
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLKDVTTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy--~GkiL~D~~tLsd~gI~~~s~I~v~v~ 75 (403)
|.+++++++|+++.|+|++++||.+||.+|++++| +|+++|||+| .|+ |+|+.+|++|+|+.+++|||++.
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tg---Ipp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQ---IPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHC---CCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHC---CChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEec
Confidence 56777889999999999999999999999999999 9999999996 566 99999999999999999998764
No 83
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.44 E-value=1.5e-13 Score=134.67 Aligned_cols=74 Identities=38% Similarity=0.618 Sum_probs=69.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~ 77 (403)
|+|+||+++|+.+.|+|++++||.+||++|+.+.| +|+++|||+|+||+|+|+++|++|+|+++++|+|+++.+
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~G---Ip~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999998753
No 84
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.41 E-value=7.4e-13 Score=113.93 Aligned_cols=41 Identities=29% Similarity=0.471 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCC-CC
Q 015628 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMH-EF 401 (403)
Q Consensus 361 ~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~~~-d~ 401 (403)
+.|++|++|||+|+.|++||.+|++|++.|++|||++.. |.
T Consensus 80 ~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~~~d~ 121 (126)
T 2lbc_A 80 EIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEE 121 (126)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCcc
Confidence 569999999999999999999999999999999999877 53
No 85
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.40 E-value=3.2e-13 Score=112.89 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=65.6
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCe-----------e----cCCCCccccccc
Q 015628 1 MKVFVKTLKGTHFEIEVK-PEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK-----------V----LKDVTTLEENKV 64 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~-~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~Gk-----------i----L~D~~tLsd~gI 64 (403)
|+|+||+.+|+. .|+|+ +++||.+||++|+.+++ +|++.|+|+|.|+ . ++|+++|++|||
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~g---ip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQ---IPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSC---CCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhC---cCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 789999999965 79999 99999999999999999 9999999999988 3 588999999999
Q ss_pred CCCcEEEEEEe
Q 015628 65 AENSFVVVMLT 75 (403)
Q Consensus 65 ~~~s~I~v~v~ 75 (403)
++|++|||+..
T Consensus 84 ~~G~~L~l~~~ 94 (107)
T 1wf9_A 84 AHGSMVYLAYE 94 (107)
T ss_dssp CTTCEEECCCS
T ss_pred CCCCEEEEEeC
Confidence 99999998865
No 86
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.40 E-value=2e-13 Score=109.96 Aligned_cols=73 Identities=15% Similarity=0.070 Sum_probs=64.0
Q ss_pred EEEEE--eCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEe-------CCeecCCCCcccccccCCCcEEEE
Q 015628 2 KVFVK--TLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-------QGKVLKDVTTLEENKVAENSFVVV 72 (403)
Q Consensus 2 kI~VK--tl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy-------~GkiL~D~~tLsd~gI~~~s~I~v 72 (403)
+|.|. ..+.+.+++.+++++||.+||.+|+.++| +|+++||||| .|+.|+|+++|++|+|++|++|||
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~G---ip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFA---TPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSC---CCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHC---CCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 44554 34567789999999999999999999999 9999999997 589999999999999999999999
Q ss_pred EEecC
Q 015628 73 MLTKS 77 (403)
Q Consensus 73 ~v~k~ 77 (403)
+-+.|
T Consensus 81 vd~~P 85 (86)
T 4b6w_A 81 VDLQP 85 (86)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 97643
No 87
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.39 E-value=8.9e-13 Score=108.13 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=62.2
Q ss_pred CEEEEEeCCC--cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeC--Ce---ec-CCCCcccccccCCCcEEEE
Q 015628 1 MKVFVKTLKG--THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ--GK---VL-KDVTTLEENKVAENSFVVV 72 (403)
Q Consensus 1 MkI~VKtl~g--~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~--Gk---iL-~D~~tLsd~gI~~~s~I~v 72 (403)
++|+|+...+ +.++++|++++||.+||++|+.++| +|+++|||+|. |+ .| +|+++|++|+|++|++|+|
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~G---iP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTG---GCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHC---SCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHC---cCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 3677887655 4789999999999999999999999 99999999997 55 34 8999999999999999998
Q ss_pred E
Q 015628 73 M 73 (403)
Q Consensus 73 ~ 73 (403)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 7
No 88
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.36 E-value=6.4e-14 Score=128.28 Aligned_cols=71 Identities=21% Similarity=0.257 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+++|++|.|+|++++||.+||.+|+...| +|+++|+|||+|++|+|+.+|+ ++++|+|+++.+..
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keG---IP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG 71 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMG---FEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG 71 (189)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhC---cChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence 89999999999999999999999999999999999 9999999999999999999998 88999999987653
No 89
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.35 E-value=1.7e-12 Score=106.88 Aligned_cols=71 Identities=11% Similarity=0.040 Sum_probs=62.2
Q ss_pred EEEEEeCC--CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCC---ee----cCCCCcccccccCCCcEEEE
Q 015628 2 KVFVKTLK--GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV----LKDVTTLEENKVAENSFVVV 72 (403)
Q Consensus 2 kI~VKtl~--g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~G---ki----L~D~~tLsd~gI~~~s~I~v 72 (403)
+|+|+... ++.++++|++++||.+||++|+.++| +|+++|||+|.| +. ++|+++|++|+|++|++|+|
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~G---ip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCG---TSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHC---CCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHC---cCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 56777543 35789999999999999999999999 999999999988 33 58899999999999999999
Q ss_pred EEe
Q 015628 73 MLT 75 (403)
Q Consensus 73 ~v~ 75 (403)
+-.
T Consensus 93 vd~ 95 (97)
T 2kj6_A 93 IDL 95 (97)
T ss_dssp EEC
T ss_pred EeC
Confidence 854
No 90
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.34 E-value=2e-12 Score=105.57 Aligned_cols=73 Identities=22% Similarity=0.209 Sum_probs=63.5
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCC---ee----cCCCCcccccccCCCcEEEE
Q 015628 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV----LKDVTTLEENKVAENSFVVV 72 (403)
Q Consensus 1 MkI~VKtl~g~-~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~G---ki----L~D~~tLsd~gI~~~s~I~v 72 (403)
++|+|+..... .++++|++++||.+||++|+.++| +|+++|||+|.| +. ++|+++|.+|||+++++|||
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~g---ip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVG---SPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTC---SCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHC---CCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 36778875553 689999999999999999999999 999999999986 54 58999999999999999998
Q ss_pred EEec
Q 015628 73 MLTK 76 (403)
Q Consensus 73 ~v~k 76 (403)
+-..
T Consensus 85 ~d~~ 88 (95)
T 1v6e_A 85 IDHS 88 (95)
T ss_dssp BCCS
T ss_pred EECC
Confidence 8643
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.33 E-value=1.8e-12 Score=103.89 Aligned_cols=71 Identities=17% Similarity=0.304 Sum_probs=63.6
Q ss_pred CEEEEEeCCCcEEEEE-eCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeC--CeecC---CCCcccccccCCCcEEEEEE
Q 015628 1 MKVFVKTLKGTHFEIE-VKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ--GKVLK---DVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~g~~~~ie-V~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~--GkiL~---D~~tLsd~gI~~~s~I~v~v 74 (403)
|+|+||+.+|+. .|+ |++++||.+||.+|+++.| +++++|+|+|+ +|.|. |+++|++|||++|++|+|..
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~g---i~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITG---IAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTC---CCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhC---CCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 899999999964 477 9999999999999999999 99999999987 48874 68899999999999998875
Q ss_pred e
Q 015628 75 T 75 (403)
Q Consensus 75 ~ 75 (403)
.
T Consensus 77 ~ 77 (86)
T 2kzr_A 77 D 77 (86)
T ss_dssp C
T ss_pred C
Confidence 4
No 92
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=7.5e-12 Score=102.40 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+||+.+|+.+.+.|.+++++..||++++++.| +++..+||+|.|+.|.++.|+++|++.++++|+|+++....
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 68999999999999999999999999999999999 99999999999999999999999999999999999987654
No 93
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.26 E-value=4.3e-12 Score=125.39 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=65.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE---eCCeecCCCCcccccccCCCcEEEEEEe
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKVLKDVTTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLi---y~GkiL~D~~tLsd~gI~~~s~I~v~v~ 75 (403)
|+|+|| ++|++|.|+|++++||.+||++|++++| +|+++|||| |+||+|+|+.+|++|+|++|++|+||.+
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tg---Vpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs 79 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQ---VRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGS 79 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEcc
Confidence 578999 6899999999999999999999999999 999999999 8999999999999999999999999964
No 94
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.26 E-value=6.5e-12 Score=88.13 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHcCC
Q 015628 173 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 215 (403)
Q Consensus 173 ~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~GI 215 (403)
.++.|++|++|| |+|++|++||++++||+++|++||++||
T Consensus 4 ~e~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~~~L~~~~ 43 (43)
T 2g3q_A 4 KSLAVEELSGMG---FTEEEAHNALEKCNWDLEAATNFLLDSA 43 (43)
T ss_dssp HHHHHHHHHTTT---SCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCcCHHHHHHHHHcCC
Confidence 368999999999 9999999999999999999999999986
No 95
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.25 E-value=1.1e-11 Score=96.80 Aligned_cols=46 Identities=17% Similarity=0.340 Sum_probs=42.6
Q ss_pred CccHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCChHHHHHHHHcCCCCC
Q 015628 170 GSNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIPEQ 218 (403)
Q Consensus 170 g~~~e~~v~~i~~MG~~~f-~R~qv~~ALrAafnNPdRAvEyL~~GIP~~ 218 (403)
...|+..|++|++|| | +|+.+++||+++++|++||||||++|||+.
T Consensus 26 e~~ye~qi~qL~eMG---F~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 26 EGRYQQELEELKALG---FANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp TTTSHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred hHHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 356899999999999 9 899999999999999999999999998863
No 96
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.25 E-value=7.2e-12 Score=97.68 Aligned_cols=43 Identities=37% Similarity=0.424 Sum_probs=40.2
Q ss_pred ccHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHcCCC
Q 015628 171 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 216 (403)
Q Consensus 171 ~~~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~GIP 216 (403)
+.+++.|++||+|| |+|++|++|||+++||++||||||++|+.
T Consensus 27 ~~~ee~I~~L~eMG---F~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 27 AASEEQIQKLVAMG---FDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp CCCHHHHHHHHTTT---CCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred cccHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 45789999999999 99999999999999999999999999854
No 97
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.24 E-value=1.7e-11 Score=104.69 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=64.2
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCC---ee----cCCCCcccccccCCCcEEEE
Q 015628 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV----LKDVTTLEENKVAENSFVVV 72 (403)
Q Consensus 1 MkI~VKtl~g~-~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~G---ki----L~D~~tLsd~gI~~~s~I~v 72 (403)
|+|+|+...+. .++++|++++||.+||.+|+..+| +|+++|||+|.| +. ++|+++|.+|||++|++|||
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~G---ip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVG---TTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHC---CCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhC---CCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 46778876553 688999999999999999999999 999999999977 43 48899999999999999999
Q ss_pred EEecC
Q 015628 73 MLTKS 77 (403)
Q Consensus 73 ~v~k~ 77 (403)
+...+
T Consensus 84 vd~~p 88 (122)
T 1t0y_A 84 VDVTG 88 (122)
T ss_dssp EECTT
T ss_pred EeCCC
Confidence 97543
No 98
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.23 E-value=4.4e-11 Score=101.77 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015628 358 EEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 358 ee~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~ 397 (403)
+....|.+|++|||++.+|.+|+..|+.|.+.|+.|||..
T Consensus 75 ~~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 75 EFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4557899999999999999999999999999999999975
No 99
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.22 E-value=4.1e-11 Score=93.01 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v 74 (403)
|+|+||+.+|+.+.+.|.+++++..|+++++++.| +++..+||+|.|+.|.++.|.++|++.+|++|+|++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHT---CCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999 999999999999999999999999999999999874
No 100
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.21 E-value=1.6e-11 Score=87.42 Aligned_cols=41 Identities=29% Similarity=0.464 Sum_probs=38.1
Q ss_pred ccHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCChHHHHHHHHcC
Q 015628 171 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 214 (403)
Q Consensus 171 ~~~e~~v~~i~~MG~~~f-~R~qv~~ALrAafnNPdRAvEyL~~G 214 (403)
..++..|++|++|| | +|+.+++||+++++|++||||||++|
T Consensus 5 ~~~~~~i~~L~~MG---F~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 5 ERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 34789999999999 9 79999999999999999999999986
No 101
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.20 E-value=5.8e-11 Score=96.56 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k 78 (403)
|+|+||+.+|+.+.+.|.+++++..||+.++++.| +++..+||+|.|+.|.++.|.++|++.++++|.|++...+
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g 80 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 80 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTT---CCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 57899999999999999999999999999999999 9999999999999999999999999999999999987655
No 102
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.16 E-value=1.2e-10 Score=92.01 Aligned_cols=70 Identities=13% Similarity=0.236 Sum_probs=67.0
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEE
Q 015628 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 1 MkI~VKtl~g~-~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~ 73 (403)
|+|+|++.+|+ .+.+.|..++++..||+.++++.| ++++.+||+|.|+.|.++.|.++|++.++++|+|+
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMG---LSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHT---CTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 67999999996 899999999999999999999999 99999999999999999999999999999999987
No 103
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.16 E-value=3.1e-11 Score=84.64 Aligned_cols=38 Identities=37% Similarity=0.541 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015628 360 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 360 ~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~ 397 (403)
.++|++|++|||+|++|++||.+|++|++.|++|||++
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 47899999999999999999999999999999999986
No 104
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.16 E-value=3.3e-11 Score=88.39 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=40.6
Q ss_pred ccHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCChHHHHHHHHcCCC
Q 015628 171 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIP 216 (403)
Q Consensus 171 ~~~e~~v~~i~~MG~~~f-~R~qv~~ALrAafnNPdRAvEyL~~GIP 216 (403)
..|+..|++|++|| | +|+.+++||++++||.+||||||++|++
T Consensus 9 ~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gnve~Ave~L~~~~~ 52 (53)
T 2knz_A 9 VRFQQQLEQLNSMG---FINREANLQALIATGGDINAAIERLLGSQL 52 (53)
T ss_dssp HHHHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 45889999999999 9 9999999999999999999999999865
No 105
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.16 E-value=3.9e-11 Score=95.59 Aligned_cols=44 Identities=27% Similarity=0.381 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHc--C-CCCCC
Q 015628 173 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS--G-IPEQT 219 (403)
Q Consensus 173 ~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~--G-IP~~~ 219 (403)
.+..|++||+|| |+|++|++|||+++||++||+|||++ | ||+.+
T Consensus 29 ~ee~I~~Lv~MG---F~~~~A~~AL~~t~gdve~A~e~L~sh~~~ip~~~ 75 (83)
T 1veg_A 29 SQESINQLVYMG---FDTVVAEAALRVFGGNVQLAAQTLAHHGGSLPPDL 75 (83)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHTTTCHHHHHHHHHHHTSSCCTTS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCCchhh
Confidence 478999999999 99999999999999999999999999 7 77654
No 106
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.14 E-value=1.2e-10 Score=95.07 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=69.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~ 77 (403)
|+|+|++.+|+.+.+.|..++++..|+..++++.| ++++.+||+|.|+.|.++.|+.+|++.++++|+|++...
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhC---CCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 57889999999999999999999999999999999 899999999999999999999999999999999998754
No 107
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.14 E-value=1.2e-10 Score=97.07 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=71.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+|++.+|+.+.+.|..++++..||..++++.| +++..+||+|.|+.|.++.|+.+|++.++++|+|++.....
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHT---CCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 57899999999999999999999999999999999 99999999999999999999999999999999999876553
No 108
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.12 E-value=9.2e-11 Score=85.68 Aligned_cols=41 Identities=27% Similarity=0.428 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCChHHHHHHHHcC
Q 015628 171 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 214 (403)
Q Consensus 171 ~~~e~~v~~i~~MG~~~f-~R~qv~~ALrAafnNPdRAvEyL~~G 214 (403)
..++..|++|++|| | +|+.+++||++++||++||||||++|
T Consensus 10 ~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 10 VRFQQQLEQLSAMG---FLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 45889999999999 9 99999999999999999999999876
No 109
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.10 E-value=8.8e-11 Score=89.14 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHcCCCC
Q 015628 173 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 217 (403)
Q Consensus 173 ~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~GIP~ 217 (403)
.++.|++|++|| |+|++|++|||+++||++||+|||+++..+
T Consensus 9 ~~~~I~~L~~MG---F~~~~a~~AL~~~~~nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 9 DEKALKHITEMG---FSKEASRQALMDNGNNLEAALNVLLTSNKQ 50 (63)
T ss_dssp CHHHHHHHHTTT---CCHHHHHHHHHHTTSCHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 478999999999 999999999999999999999999998543
No 110
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.06 E-value=1.3e-10 Score=86.78 Aligned_cols=41 Identities=29% Similarity=0.464 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCChHHHHHHHHcC
Q 015628 171 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 214 (403)
Q Consensus 171 ~~~e~~v~~i~~MG~~~f-~R~qv~~ALrAafnNPdRAvEyL~~G 214 (403)
..++..|++|++|| | +|+.+++||+++++|++||||||++|
T Consensus 15 ~~~~~qi~~L~~MG---F~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 15 ERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHTHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 56889999999999 9 79999999999999999999999988
No 111
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.06 E-value=2.3e-10 Score=96.26 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=70.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k 78 (403)
|+|+|++.+|+.+.+.|..++++..||+.++++.| +++..+||+|.|+.|.++.|..+|++.++++|.|++....
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~g---i~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQG---ISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHT---CCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 57999999999999999999999999999999999 9999999999999999999999999999999999987543
No 112
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.06 E-value=1.6e-10 Score=88.40 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=41.2
Q ss_pred ccHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCChHHHHHHHHcCCCCC
Q 015628 171 SNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIPEQ 218 (403)
Q Consensus 171 ~~~e~~v~~i~~MG~~~f-~R~qv~~ALrAafnNPdRAvEyL~~GIP~~ 218 (403)
..|+..|++|++|| | +|+.+++|||++++|++||||||++++++.
T Consensus 17 ~~y~~ql~qL~~MG---F~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 17 VRFSKEMECLQAMG---FVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp HHTHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 45788999999999 9 788889999999999999999999998863
No 113
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.05 E-value=1.4e-10 Score=88.01 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015628 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 401 (403)
Q Consensus 359 e~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~~~d~ 401 (403)
+.++|++|++|||+|++|++||.+|++|.+.|++|||++..+.
T Consensus 9 ~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 9 DEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQK 51 (63)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 4578999999999999999999999999999999999986553
No 114
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.04 E-value=4e-10 Score=94.12 Aligned_cols=73 Identities=11% Similarity=0.157 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~ 77 (403)
|+|+|++ +|+.+.+.|..++++..||+.++++.| +++..+||+|.|+.|.++.|..+|++.++++|.|+++..
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~g---i~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhC---CCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 5788999 999999999999999999999999999 899999999999999999999999999999999998754
No 115
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.1e-10 Score=88.56 Aligned_cols=43 Identities=40% Similarity=0.677 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHcCCCCC
Q 015628 173 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 218 (403)
Q Consensus 173 ~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~GIP~~ 218 (403)
.++.|++|++|| |+|++|++|||+++||++||+|||+.++++.
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~A~e~L~~~~~d~ 51 (63)
T 2dak_A 9 PEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSHIDDL 51 (63)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCSHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCc
Confidence 578999999999 9999999999999999999999999997753
No 116
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.01 E-value=3.5e-10 Score=88.30 Aligned_cols=40 Identities=20% Similarity=0.479 Sum_probs=37.9
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHcCC
Q 015628 173 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 215 (403)
Q Consensus 173 ~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~GI 215 (403)
.++.|++|++|| |+|++|++|||+++||++||||||+++.
T Consensus 29 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 29 DQSSVDTLLSFG---FAEDVARKALKASGGDIEKATDWVFNNS 68 (73)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 478999999999 9999999999999999999999999884
No 117
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.99 E-value=1e-09 Score=89.66 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=61.9
Q ss_pred EEEEEe---CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCC------ee-c-CCCCcccccccCCCcEE
Q 015628 2 KVFVKT---LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG------KV-L-KDVTTLEENKVAENSFV 70 (403)
Q Consensus 2 kI~VKt---l~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~G------ki-L-~D~~tLsd~gI~~~s~I 70 (403)
+|+|+. .+|+.+++.+..++||.+||.+|+..+| +|+..|||+|.+ .+ | +|..+|.+|+|.+|++|
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~g---ip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLK---VPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTT---CCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHC---CChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 566765 4678899999999999999999999999 999999999863 22 5 66789999999999999
Q ss_pred EEEEec
Q 015628 71 VVMLTK 76 (403)
Q Consensus 71 ~v~v~k 76 (403)
||....
T Consensus 88 ~V~d~~ 93 (97)
T 1wjn_A 88 LVRWSG 93 (97)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 998754
No 118
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.99 E-value=4.7e-10 Score=77.02 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=36.2
Q ss_pred ccHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHH
Q 015628 171 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 212 (403)
Q Consensus 171 ~~~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~ 212 (403)
+++++.|++|++|| |+|+++++||+++.+|+++|++||+
T Consensus 2 ~~~~~~i~~L~~mG---f~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMG---FDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 35788999999999 9999999999999999999999994
No 119
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.98 E-value=2.8e-10 Score=86.65 Aligned_cols=43 Identities=23% Similarity=0.365 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhC-ChHHHHHHHHcCCCCC
Q 015628 173 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 218 (403)
Q Consensus 173 ~e~~v~~i~~MG~~~f~R~qv~~ALrAafn-NPdRAvEyL~~GIP~~ 218 (403)
.+..|++|++|| |+|+.|++||++++| |+++|++||+.++++.
T Consensus 9 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~ 52 (64)
T 2crn_A 9 SPSLLEPLLAMG---FPVHTALKALAATGRKTAEEALAWLHDHCNDP 52 (64)
T ss_dssp SCSSHHHHHHTS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHSSST
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 456899999999 999999999999999 9999999999998753
No 120
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.98 E-value=4e-10 Score=87.79 Aligned_cols=48 Identities=27% Similarity=0.362 Sum_probs=43.5
Q ss_pred ccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015628 353 VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400 (403)
Q Consensus 353 ~~lt~ee~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~~~d 400 (403)
.+.+++..++|++|++|||+|++|++||.+|++|.+.|++|||++...
T Consensus 23 ~~~~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 23 QGRVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSGP 70 (73)
T ss_dssp CCCSCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSCS
T ss_pred ccCCcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 467777788999999999999999999999999999999999987543
No 121
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.97 E-value=6.5e-10 Score=89.19 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCCC
Q 015628 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 402 (403)
Q Consensus 359 e~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~~~d~~ 402 (403)
+.++|++|++|||+|+.|++||.+|++|++.|++|||+|.+|.|
T Consensus 21 n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D~D 64 (85)
T 2dkl_A 21 MSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVDVD 64 (85)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCCSS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCCcc
Confidence 35679999999999999999999999999999999999988866
No 122
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.97 E-value=5.5e-10 Score=83.06 Aligned_cols=49 Identities=27% Similarity=0.421 Sum_probs=45.9
Q ss_pred cccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015628 352 AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400 (403)
Q Consensus 352 ~~~lt~ee~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~~~d 400 (403)
...|++.|.++|+.|+.|||++++|+.|+-+|+.|.|.|++|||+|+.-
T Consensus 12 l~~ls~se~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 12 LQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSGP 60 (63)
T ss_dssp HHTCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSCC
T ss_pred HHhhCcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 4579999999999999999999999999999999999999999998653
No 123
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.97 E-value=5.8e-10 Score=84.87 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHhccCCCCC
Q 015628 361 EAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHMHEFE 402 (403)
Q Consensus 361 ~ai~rL~~lGF~~~~~~~a~~ac~~-ne~~a~~~L~~~~~d~~ 402 (403)
+.|++|++|||+++.|++||.+|++ |++.|++|||++..|.|
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~d 63 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPSS 63 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Confidence 5799999999999999999999997 99999999999987755
No 124
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=6.7e-10 Score=86.89 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhC-ChHHHHHHHHcCCCCC
Q 015628 173 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 218 (403)
Q Consensus 173 ~e~~v~~i~~MG~~~f~R~qv~~ALrAafn-NPdRAvEyL~~GIP~~ 218 (403)
.+..|++|++|| |+|++|++|||+++| |.++|+|||+.++++.
T Consensus 9 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~ 52 (74)
T 2dag_A 9 DESVIIQLVEMG---FPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP 52 (74)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTST
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 478999999999 999999999999997 7999999999998754
No 125
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.96 E-value=4.2e-10 Score=85.66 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhh-CChHHHHHHHHcCCCCC
Q 015628 174 EATVQQILDMGGGSWDRETVIRALRAAY-NNPERAVEYLYSGIPEQ 218 (403)
Q Consensus 174 e~~v~~i~~MG~~~f~R~qv~~ALrAaf-nNPdRAvEyL~~GIP~~ 218 (403)
+..|++|++|| |+|++|++|||+++ +|+++|++||+.++++.
T Consensus 10 ~~~v~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~ 52 (64)
T 1whc_A 10 LTALESLIEMG---FPRGRAEKALALTGNQGIEAAMDWLMEHEDDP 52 (64)
T ss_dssp CCHHHHHHTTT---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCc
Confidence 35899999999 99999999999995 89999999999997754
No 126
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.95 E-value=7.2e-10 Score=76.07 Aligned_cols=39 Identities=33% Similarity=0.488 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHh
Q 015628 357 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 395 (403)
Q Consensus 357 ~ee~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~ 395 (403)
++..++|++|++|||++++|++||.+|++|.+.|++|||
T Consensus 2 ~~~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 345678999999999999999999999999999999997
No 127
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.94 E-value=8.4e-10 Score=79.56 Aligned_cols=41 Identities=27% Similarity=0.427 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015628 357 PEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 357 ~ee~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~ 397 (403)
++..+.|++|++|||+|++|+.||.+|++|.+.|++|||++
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 45667899999999999999999999999999999999986
No 128
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.94 E-value=5.5e-10 Score=85.02 Aligned_cols=40 Identities=23% Similarity=0.408 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhhC-ChHHHHHHHHcCCC
Q 015628 174 EATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIP 216 (403)
Q Consensus 174 e~~v~~i~~MG~~~f~R~qv~~ALrAafn-NPdRAvEyL~~GIP 216 (403)
+..|++|++|| |+|++|++|||++.| |+++|+|||++++-
T Consensus 20 e~~i~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 20 GSALDVLLSMG---FPRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp CCHHHHHHHHT---CCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 46899999999 999999999999998 99999999998854
No 129
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=7.8e-10 Score=86.53 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHhccCCCCC
Q 015628 359 EREAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHMHEFE 402 (403)
Q Consensus 359 e~~ai~rL~~lGF~~~~~~~a~~ac~~-ne~~a~~~L~~~~~d~~ 402 (403)
+.++|++|++|||+|..|++||++|++ |++.|++|||++..|.+
T Consensus 9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d 53 (74)
T 2dag_A 9 DESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPD 53 (74)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcc
Confidence 456799999999999999999999995 89999999999987654
No 130
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=7.9e-10 Score=88.33 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCCC
Q 015628 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 402 (403)
Q Consensus 359 e~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~~~d~~ 402 (403)
+.++|++|++|||+++.|++||.+|++|++.|++|||+|..|.+
T Consensus 29 ~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d~d 72 (83)
T 2dai_A 29 DEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPT 72 (83)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGCST
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCcc
Confidence 45679999999999999999999999999999999999876643
No 131
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=7.8e-10 Score=78.97 Aligned_cols=38 Identities=37% Similarity=0.597 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHcC
Q 015628 173 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 214 (403)
Q Consensus 173 ~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~G 214 (403)
.++.|++|++|| |+|+++++|||++ ||+++|+|||++.
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~~-~n~e~A~~~L~~h 46 (47)
T 2ekk_A 9 NQQQLQQLMDMG---FTREHAMEALLNT-STMEQATEYLLTH 46 (47)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHS-CSHHHHHHHHHTC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHc-CCHHHHHHHHHcC
Confidence 478999999999 9999999999999 7999999999864
No 132
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.91 E-value=1.1e-09 Score=83.24 Aligned_cols=42 Identities=29% Similarity=0.442 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHh-CCCHHHHHHHHhccCCCCC
Q 015628 361 EAIERLEAMGFDRALVLEVFFAC-NKNEELAANYLLDHMHEFE 402 (403)
Q Consensus 361 ~ai~rL~~lGF~~~~~~~a~~ac-~~ne~~a~~~L~~~~~d~~ 402 (403)
+.|++|++|||+|..|++||.+| ++|++.|++|||++..|.+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~d 53 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPD 53 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCcc
Confidence 46999999999999999999999 7999999999999877654
No 133
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.89 E-value=1.3e-09 Score=85.06 Aligned_cols=46 Identities=13% Similarity=0.287 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015628 356 TPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 401 (403)
Q Consensus 356 t~ee~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~~~d~ 401 (403)
++.+.++|++|++|||+|++|++||.+|++|.+.|++|||++..|.
T Consensus 26 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~d~ 71 (73)
T 1wiv_A 26 SDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGPS 71 (73)
T ss_dssp CSSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCSS
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 4456678999999999999999999999999999999999987764
No 134
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=98.89 E-value=1.5e-09 Score=79.22 Aligned_cols=38 Identities=32% Similarity=0.473 Sum_probs=36.1
Q ss_pred HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015628 361 EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 361 ~ai~rL~~lGF-~~~~~~~a~~ac~~ne~~a~~~L~~~~ 398 (403)
+.|++|++||| +|+.|++||.+|++|.+.|++|||+++
T Consensus 14 ~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 14 QQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 67999999999 999999999999999999999999863
No 135
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=6.7e-10 Score=84.23 Aligned_cols=43 Identities=23% Similarity=0.520 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015628 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEF 401 (403)
Q Consensus 359 e~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~~~d~ 401 (403)
+.+.|++|++|||+|+.|++||.+|++|.+.|++|||++..|.
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~d~ 51 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDL 51 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCc
Confidence 3467999999999999999999999999999999999986553
No 136
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.86 E-value=2.5e-09 Score=76.95 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015628 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 361 ~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~ 397 (403)
+.|++|++|||+|++||+|+..|++|.++|+|+|++-
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 6799999999999999999999999999999999984
No 137
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.86 E-value=2.2e-09 Score=81.65 Aligned_cols=42 Identities=31% Similarity=0.396 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHhccCCCCC
Q 015628 361 EAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHMHEFE 402 (403)
Q Consensus 361 ~ai~rL~~lGF~~~~~~~a~~ac~~-ne~~a~~~L~~~~~d~~ 402 (403)
+.|++|++|||+|+.|++|+++|++ |++.|.||||+|..|.+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d 53 (64)
T 2crn_A 11 SLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPS 53 (64)
T ss_dssp SSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcc
Confidence 3599999999999999999999976 99999999999987643
No 138
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=3e-09 Score=84.96 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHcCCCCC
Q 015628 173 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQ 218 (403)
Q Consensus 173 ~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~GIP~~ 218 (403)
.+..|++|++|| |+|++|++|||+++||.++|+|||+.++.+.
T Consensus 29 ~e~~i~~L~~MG---F~~~~a~~AL~~t~~nve~A~ewL~~~~~d~ 71 (83)
T 2dai_A 29 DEAALRQLTEMG---FPENRATKALQLNHMSVPQAMEWLIEHAEDP 71 (83)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHGGGCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 578999999999 9999999999999999999999999986643
No 139
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.83 E-value=2.6e-09 Score=85.52 Aligned_cols=43 Identities=26% Similarity=0.365 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhC-ChHHHHHHHHcCCCCC
Q 015628 173 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYSGIPEQ 218 (403)
Q Consensus 173 ~e~~v~~i~~MG~~~f~R~qv~~ALrAafn-NPdRAvEyL~~GIP~~ 218 (403)
.+..|++|++|| |+|++|++|||+++| |.++|++||+.++++.
T Consensus 29 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~ 72 (84)
T 1vek_A 29 NEEIVAQLVSMG---FSQLHCQKAAINTSNAGVEEAMNWLLSHMDDP 72 (84)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 478999999999 999999999999985 9999999999997753
No 140
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=2.5e-09 Score=76.34 Aligned_cols=38 Identities=32% Similarity=0.579 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015628 360 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 360 ~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~~ 398 (403)
.+.|++|++|||+++.|++||.+|+ |.+.|++|||+|+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTHP 47 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcCC
Confidence 4579999999999999999999996 9999999999874
No 141
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=98.82 E-value=5e-09 Score=76.72 Aligned_cols=38 Identities=29% Similarity=0.471 Sum_probs=35.9
Q ss_pred HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015628 361 EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 361 ~ai~rL~~lGF-~~~~~~~a~~ac~~ne~~a~~~L~~~~ 398 (403)
+.|++|++||| +|+.|++||.+|++|.+.|++|||++.
T Consensus 13 ~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 13 QQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 45999999999 999999999999999999999999875
No 142
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.81 E-value=3.8e-09 Score=78.57 Aligned_cols=39 Identities=28% Similarity=0.577 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHcC
Q 015628 173 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 214 (403)
Q Consensus 173 ~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~G 214 (403)
-++.|..|++|| |.++|+++||++.-||.|||+|||.+-
T Consensus 19 e~e~V~~LvsMG---Fs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 19 ERQCVETVVNMG---YSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHH---CCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 477899999999 999999999999999999999999874
No 143
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.78 E-value=5.7e-09 Score=75.41 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015628 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 361 ~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~~ 398 (403)
+.|++|++|||+|++||+|+..|++|+|+|+|+|++..
T Consensus 11 ~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 11 SEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34999999999999999999999999999999999753
No 144
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.77 E-value=5.6e-09 Score=83.60 Aligned_cols=44 Identities=30% Similarity=0.451 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHh-CCCHHHHHHHHhccCCCCC
Q 015628 359 EREAIERLEAMGFDRALVLEVFFAC-NKNEELAANYLLDHMHEFE 402 (403)
Q Consensus 359 e~~ai~rL~~lGF~~~~~~~a~~ac-~~ne~~a~~~L~~~~~d~~ 402 (403)
+.++|++|++|||+|..|++||++| ++|++.|++|||+|..|.+
T Consensus 29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d 73 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPD 73 (84)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCST
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccc
Confidence 5578999999999999999997777 5899999999999877643
No 145
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.76 E-value=8.3e-09 Score=82.15 Aligned_cols=42 Identities=31% Similarity=0.378 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015628 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400 (403)
Q Consensus 359 e~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~~~d 400 (403)
..+.|++|++|||+|++|++||.+|++|.+.|++|||+|..+
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 346799999999999999999999999999999999998664
No 146
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.75 E-value=8.8e-09 Score=88.35 Aligned_cols=41 Identities=41% Similarity=0.608 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHcCCC
Q 015628 173 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 216 (403)
Q Consensus 173 ~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~GIP 216 (403)
.+..|++|++|| |+|++|++|||+++||++||+|||+++++
T Consensus 78 ~e~~v~~L~~MG---F~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 78 PEEIVAIITSMG---FQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CHHHHHHHHHHT---SCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 478999999999 99999999999999999999999999987
No 147
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.72 E-value=1.3e-08 Score=74.82 Aligned_cols=41 Identities=29% Similarity=0.442 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCChHHHHHHHHcCC
Q 015628 172 NLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGI 215 (403)
Q Consensus 172 ~~e~~v~~i~~MG~~~f-~R~qv~~ALrAafnNPdRAvEyL~~GI 215 (403)
.|+..|++|++|| | +|+.+++||+++.+|.+||||||+++.
T Consensus 8 ~~~~~l~~L~~MG---F~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 8 HFQVQLEQLRSMG---FLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp SSHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4788999999999 9 566689999999999999999999873
No 148
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.71 E-value=5.1e-08 Score=82.35 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=68.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEec
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k 76 (403)
|+|+|++.+|+.+.+.|..++++..|++..+++.| ++...+||+|.|+.|.++.|..++++.++++|.|++..
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~G---l~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhC---CChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 46788888899999999999999999999999999 99999999999999999999999999999999999753
No 149
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.71 E-value=1.4e-08 Score=84.81 Aligned_cols=42 Identities=33% Similarity=0.509 Sum_probs=39.0
Q ss_pred cHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCChHHHHHHHHcCCC
Q 015628 172 NLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSGIP 216 (403)
Q Consensus 172 ~~e~~v~~i~~MG~~~f-~R~qv~~ALrAafnNPdRAvEyL~~GIP 216 (403)
.++..|++|.+|| | +|+.+++||+++++|++||||||++|.+
T Consensus 65 ~~~~qL~qL~eMG---F~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 65 QWQPQLQQLRDMG---IQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp TTHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 4788999999999 9 8899999999999999999999999844
No 150
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.68 E-value=2.3e-08 Score=71.08 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=34.1
Q ss_pred HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015628 361 EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 361 ~ai~rL~~lGF-~~~~~~~a~~ac~~ne~~a~~~L~~~ 397 (403)
+.|++|++||| +|+.+++|+.+|++|.+.|++|||++
T Consensus 9 ~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 9 HQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 45999999999 68889999999999999999999974
No 151
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.65 E-value=2.5e-08 Score=79.99 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHcC
Q 015628 174 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 214 (403)
Q Consensus 174 e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~G 214 (403)
+..|++|++|| |+|++|++||++.++|+++|+|||+..
T Consensus 22 ~~~I~qL~~MG---F~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMG---FPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 78999999999 999999999999999999999999986
No 152
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.62 E-value=4.2e-08 Score=76.51 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015628 360 REAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHEF 401 (403)
Q Consensus 360 ~~ai~rL~~lGF-~~~~~~~a~~ac~~ne~~a~~~L~~~~~d~ 401 (403)
.+.|++|++||| +|+.+++||.+|++|++.|++|||++...+
T Consensus 30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 30 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 346999999999 799999999999999999999999975543
No 153
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.61 E-value=4.6e-08 Score=71.84 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015628 360 REAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHE 400 (403)
Q Consensus 360 ~~ai~rL~~lGF-~~~~~~~a~~ac~~ne~~a~~~L~~~~~d 400 (403)
.+.|++|++||| +++.+++||.+|++|.+.|++|||+++..
T Consensus 10 ~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 10 QVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 356999999999 55668999999999999999999987643
No 154
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.61 E-value=4.1e-08 Score=73.14 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=35.2
Q ss_pred HHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015628 361 EAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 361 ~ai~rL~~lGF-~~~~~~~a~~ac~~ne~~a~~~L~~~~ 398 (403)
+.|++|++||| +|+.+++||.+|++|.+.|++|||+++
T Consensus 19 ~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 19 HQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 45999999999 699999999999999999999999874
No 155
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.55 E-value=7.4e-08 Score=69.76 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015628 360 REAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 360 ~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~ 397 (403)
.+.|.+|++|||+|+.|++|+..|+.|.|+|.|+|++-
T Consensus 8 e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 8 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 45799999999999999999999999999999999974
No 156
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=98.52 E-value=1.9e-08 Score=71.78 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHcCC
Q 015628 172 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 215 (403)
Q Consensus 172 ~~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~GI 215 (403)
+-+.+|++|++|| |+|.+|++||.+.-+|.++|++||+++.
T Consensus 3 ~e~eaI~rL~~mG---F~~~~a~~Al~a~~~n~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 3 QEKEAIERLKALG---FPESLVIQAYFACEKNENLAANFLLSQN 43 (47)
T ss_dssp CCHHHHTTTTTTT---CCHHHHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred chHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 4578999999999 9999999999999999999999999874
No 157
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.48 E-value=1.7e-07 Score=71.57 Aligned_cols=47 Identities=26% Similarity=0.291 Sum_probs=39.3
Q ss_pred CCHHH--HHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015628 355 VTPEE--REAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHEF 401 (403)
Q Consensus 355 lt~ee--~~ai~rL~~lGF-~~~~~~~a~~ac~~ne~~a~~~L~~~~~d~ 401 (403)
..+|+ ...|++|++||| +|+.+++|+.+|++|.+.|++|||++..|.
T Consensus 13 ~~pe~~y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 13 QAPEVRFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp CCHHHHTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred CChHHHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 34555 345999999998 677789999999999999999999986653
No 158
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.46 E-value=4.7e-07 Score=83.47 Aligned_cols=76 Identities=11% Similarity=0.116 Sum_probs=70.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKVS 80 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~~ 80 (403)
++|+|+ .+|+.+.+.|..++++..||+..+++.| ++..++||+|.|+.|.++.|..++++.+|++|.|++...+..
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~G---i~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHS---SCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhC---CChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 467787 4889999999999999999999999999 999999999999999999999999999999999999876644
No 159
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.46 E-value=1e-07 Score=75.47 Aligned_cols=69 Identities=10% Similarity=0.181 Sum_probs=57.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCee---c--CCCCcccccccCCCcEEEEE
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV---L--KDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~Gki---L--~D~~tLsd~gI~~~s~I~v~ 73 (403)
|.|.||+.+| .+.|+|++++||.+||++|.+.++ ++++.|.|.++-.. | .++.+|+++||+.|+.|+|.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~---i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFG---FQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTC---CCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcC---CCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6789998887 678999999999999999999999 88888777654433 3 46789999999999999874
No 160
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.43 E-value=2.5e-07 Score=64.64 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015628 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 361 ~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~ 397 (403)
.+|.+|+.|||+++.|++|+..|+.|.|+|.|.|++.
T Consensus 6 ~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 6 SEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 5699999999999999999999999999999999875
No 161
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.42 E-value=1.9e-07 Score=86.19 Aligned_cols=75 Identities=27% Similarity=0.282 Sum_probs=56.2
Q ss_pred hCHHHHHHHHHcHHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHH
Q 015628 311 QNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 390 (403)
Q Consensus 311 ~nP~l~~lI~~n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~~~lt~ee~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a 390 (403)
-|++.+++...|++.|.+...+-... ... .-...++-.+.|++|++|||+|++|++|+..|+||++.|
T Consensus 127 ~n~~aa~~~~~~~~~f~~~a~~~~~~--------~a~----~~~~~~~~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A 194 (201)
T 3k9o_A 127 QDAVVANQYKQNPEMFKQTARLWAHV--------YAG----APVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETA 194 (201)
T ss_dssp SCHHHHHHHHHCHHHHHHHHHHHHHH--------HHC----CCCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHH
T ss_pred ccHHHHHHHHHCHHHHHHHHHHHHHH--------hcc----cccccchhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHH
Confidence 36788888888999988875432100 000 001233446789999999999999999999999999999
Q ss_pred HHHHhcc
Q 015628 391 ANYLLDH 397 (403)
Q Consensus 391 ~~~L~~~ 397 (403)
+++||++
T Consensus 195 ~e~L~~~ 201 (201)
T 3k9o_A 195 TELLLSN 201 (201)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9999985
No 162
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.41 E-value=3.3e-07 Score=83.60 Aligned_cols=75 Identities=11% Similarity=0.121 Sum_probs=68.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+|+ .+|+.+.+.|..++++..|++..+++.| +++..+||+|.|+.|.++.|..++++.++|+|.|++...+.
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqG---L~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTT---CCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhC---CCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 356776 4889999999999999999999999999 99999999999999999999999999999999999876553
No 163
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.41 E-value=3e-07 Score=66.13 Aligned_cols=38 Identities=34% Similarity=0.424 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHc
Q 015628 173 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 213 (403)
Q Consensus 173 ~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~ 213 (403)
.+..|+.||+|| |+|++|++||+.+-||.|-|..+|+.
T Consensus 11 ~~~~Ia~Lm~mG---Fsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 11 VDAKIAKLMGEG---YAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp CHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 357999999999 99999999999999999999999974
No 164
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.35 E-value=5.2e-07 Score=65.19 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHc
Q 015628 173 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 213 (403)
Q Consensus 173 ~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~ 213 (403)
.+..|..||+|| |+|++|++||+.+-||.|-|..+|+.
T Consensus 9 ~e~~I~~L~~lG---F~r~~ai~AL~~a~nnve~Aa~iL~e 46 (53)
T 2d9s_A 9 LSSEIERLMSQG---YSYQDIQKALVIAHNNIEMAKNILRE 46 (53)
T ss_dssp SHHHHHHHHHHT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 356799999999 99999999999999999999999985
No 165
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.34 E-value=5.4e-07 Score=76.49 Aligned_cols=45 Identities=31% Similarity=0.510 Sum_probs=43.2
Q ss_pred cCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015628 354 TVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 354 ~lt~ee~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~~ 398 (403)
.|+++|++.|.+|.+|||++..|++|+.+|+.|.+.|.||||.++
T Consensus 3 ~l~~~e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~h~ 47 (118)
T 4ae4_A 3 HMSPSERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAHG 47 (118)
T ss_dssp CSCHHHHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999999874
No 166
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.26 E-value=1.4e-06 Score=60.77 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=38.5
Q ss_pred CccHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHc
Q 015628 170 GSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 213 (403)
Q Consensus 170 g~~~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~ 213 (403)
|+.+|..|..||+|| |+|+.|++||-.+-||.+-|-+.|+.
T Consensus 1 ~~~~e~~I~~L~s~G---f~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 1 GSQLSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp CCHHHHHHHHHHHTT---BCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcC---CCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 567899999999999 99999999999999999999999974
No 167
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.25 E-value=9.2e-07 Score=73.75 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccCC
Q 015628 360 REAIERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMH 399 (403)
Q Consensus 360 ~~ai~rL~~lGF-~~~~~~~a~~ac~~ne~~a~~~L~~~~~ 399 (403)
.+.|++|++||| +|+.+++||.+|++|++.|++|||+++.
T Consensus 67 ~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 67 QPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 457999999999 7799999999999999999999998753
No 168
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.23 E-value=6.5e-06 Score=64.40 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=65.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CcEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015628 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~-~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v 74 (403)
.+.+|+.+...+.+.|.++.+|.+|-+.-+.+.| ++.+ .++|.|.|..|+.+.++.+|++.+++.|-||+
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~---I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVK---ISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHT---CCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcC---CCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 4567777778899999999999999999999999 9999 99999999999999999999999999999986
No 169
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=98.21 E-value=1.2e-06 Score=83.68 Aligned_cols=75 Identities=25% Similarity=0.259 Sum_probs=57.9
Q ss_pred hCHHHHHHHHHcHHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHH
Q 015628 311 QNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELA 390 (403)
Q Consensus 311 ~nP~l~~lI~~n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~~~lt~ee~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a 390 (403)
-|++.+++...|++.|.+...+-... ... .....++-.+.|++|++|||+|+.|++|+..|+||++.|
T Consensus 179 ln~eaa~l~~~d~~~f~~~ar~~t~~--------yA~----~~~~~~~~~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A 246 (253)
T 3e46_A 179 QDAVVANQYKQNPEMFKQTARLWAHV--------YAG----APVSSPEYTKKIENLCAAGFDRNAVIVALSSKSWDVETA 246 (253)
T ss_dssp SCHHHHHHHHHCHHHHHHHHHHHHHH--------HHC----CSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHH
T ss_pred hhHHHHHHHHHCHHHHHHHHHHHHHH--------hcc----cccCcchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHH
Confidence 47889999999999998886432110 000 011234556789999999999999999999999999999
Q ss_pred HHHHhcc
Q 015628 391 ANYLLDH 397 (403)
Q Consensus 391 ~~~L~~~ 397 (403)
.++||++
T Consensus 247 ~e~L~~~ 253 (253)
T 3e46_A 247 TELLLSN 253 (253)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9999974
No 170
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.18 E-value=2.5e-06 Score=70.36 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=38.1
Q ss_pred HHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015628 359 EREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHMHE 400 (403)
Q Consensus 359 e~~ai~rL~~l-GF~~~~~~~a~~ac~~ne~~a~~~L~~~~~d 400 (403)
-.+.|++|++| ||++++|+.||..|++|++.|+++||+...|
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 34669999999 9999999999999999999999999987643
No 171
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.17 E-value=1.9e-06 Score=62.44 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHc
Q 015628 173 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 213 (403)
Q Consensus 173 ~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~ 213 (403)
.|..|..||+|| |+|+.|++||+.+-||.+-|-..|+.
T Consensus 7 ~e~~Ia~L~smG---fsr~da~~AL~ia~Ndv~~AtNiLlE 44 (56)
T 2juj_A 7 LSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILRE 44 (56)
T ss_dssp HHHHHHHHHTTT---CCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred ChHHHHHHHHcC---CCHHHHHHHHHHhcccHHHHHHHHHH
Confidence 578999999999 99999999999999999999999986
No 172
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.11 E-value=3.7e-07 Score=84.35 Aligned_cols=75 Identities=11% Similarity=0.122 Sum_probs=0.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~ 79 (403)
|+|+| +.+|+.+.+.|..++++..||+..+++.| +++..+||+|.|+.|.++.|..++++.+||+|.|+....+.
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqG---Ls~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp ------------------------------------------------------------------------------C
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhC---CCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 56777 67888899999999999999999999999 99999999999999999999999999999999999876543
No 173
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.09 E-value=2.4e-06 Score=78.73 Aligned_cols=43 Identities=33% Similarity=0.470 Sum_probs=40.1
Q ss_pred cCCccHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHc
Q 015628 168 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 213 (403)
Q Consensus 168 ~~g~~~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~ 213 (403)
..++.+++.|++|++|| |+|++|+.||+...+|.++|+|||++
T Consensus 158 ~~~~~~eekV~~l~~MG---f~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 158 VSSPEYTKKIENLCAMG---FDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp CCCHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34667899999999999 99999999999999999999999985
No 174
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.07 E-value=1.5e-05 Score=65.32 Aligned_cols=70 Identities=10% Similarity=0.202 Sum_probs=63.7
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEE
Q 015628 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 1 MkI~VKtl~g~-~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~ 73 (403)
++|+|+..+|+ .+.+.|..+.++..|....+++.| +++...||+|.|..|..+.|..++++.++++|.|+
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g---~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMG---LSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTT---CSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35677777784 788999999999999999999999 88999999999999999999999999999999886
No 175
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.03 E-value=3.2e-06 Score=61.69 Aligned_cols=46 Identities=28% Similarity=0.256 Sum_probs=39.6
Q ss_pred CHHHHHH--HHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015628 356 TPEEREA--IERLEAMGF-DRALVLEVFFACNKNEELAANYLLDHMHEF 401 (403)
Q Consensus 356 t~ee~~a--i~rL~~lGF-~~~~~~~a~~ac~~ne~~a~~~L~~~~~d~ 401 (403)
.+||+.+ +++|.+||| |++..++++..|++|.+.|++.|+.....|
T Consensus 4 ~~ee~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~~ 52 (54)
T 2cp8_A 4 GSSGQTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSGPS 52 (54)
T ss_dssp SSCTTHHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSSC
T ss_pred CHHHhhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccCCC
Confidence 3455555 889999999 999999999999999999999999865544
No 176
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.96 E-value=1.1e-05 Score=66.52 Aligned_cols=44 Identities=27% Similarity=0.571 Sum_probs=41.4
Q ss_pred ccHHHHHHHHHHc-CCCCCCHHHHHHHHHHhhCChHHHHHHHHcCCCC
Q 015628 171 SNLEATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE 217 (403)
Q Consensus 171 ~~~e~~v~~i~~M-G~~~f~R~qv~~ALrAafnNPdRAvEyL~~GIP~ 217 (403)
++++..|+.|++| | |++++++.||..+.++.++|++||+.|.|+
T Consensus 37 ~d~eekVk~L~EmtG---~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 37 ADFEEKVKQLIDITG---KNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHHHHTC---CCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred ccHHHHHHHHHHhhC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 4578999999999 9 999999999999999999999999999874
No 177
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.92 E-value=4.8e-06 Score=83.52 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015628 359 EREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400 (403)
Q Consensus 359 e~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~~~d 400 (403)
..++|.+|++|||+|++|++|+.+|++|.+.|++|||++..|
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip~ 209 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPG 209 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTSSTT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 456799999999999999999999999999999999987654
No 178
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.75 E-value=5.3e-05 Score=70.15 Aligned_cols=73 Identities=11% Similarity=0.141 Sum_probs=67.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015628 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k 78 (403)
+|+|++ +|+.+.+.|..++++..||+..+++.| ++..++||+|.|+.+.++.+..++.+.++++|.++.....
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g---~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhC---CChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 567776 677888999999999999999999999 9999999999999999999999999999999999987655
No 179
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.75 E-value=0.00011 Score=59.70 Aligned_cols=72 Identities=11% Similarity=0.197 Sum_probs=66.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEec
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k 76 (403)
+.|.|+ .+|..+.+.|..++....|.+..+.+.| +.+...+++|.|..+.++.|-.++++.++++|-+++.+
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~g---v~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLG---VSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHT---SCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcC---CChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 357788 4788899999999999999999999999 89999999999999999999999999999999999864
No 180
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.72 E-value=0.0001 Score=59.91 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=49.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecC--CCCccccccc-CCCcEEEEEE
Q 015628 9 KGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLK--DVTTLEENKV-AENSFVVVML 74 (403)
Q Consensus 9 ~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~--D~~tLsd~gI-~~~s~I~v~v 74 (403)
.++.+.|.|.+++||..||++|++++| +++.+|+|||.||.|. ..+.-..|-- ...+-|+|+-
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eqTg---Ip~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred cceEEEEEeccchHHHHHHHHHHHHhC---CCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 467788999999999999999999999 9999999999998764 4445555533 3344555553
No 181
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.68 E-value=3.8e-05 Score=56.01 Aligned_cols=42 Identities=24% Similarity=0.342 Sum_probs=38.6
Q ss_pred CccHHHHHHHHHHcCCCCC-CHHHHHHHHHHhhCChHHHHHHHHcC
Q 015628 170 GSNLEATVQQILDMGGGSW-DRETVIRALRAAYNNPERAVEYLYSG 214 (403)
Q Consensus 170 g~~~e~~v~~i~~MG~~~f-~R~qv~~ALrAafnNPdRAvEyL~~G 214 (403)
-+.|...+.+|.+|| | +++..++|||...+|.++||++|+.+
T Consensus 6 ee~~a~~L~~L~eMG---F~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 6 SGQTAALMAHLFEMG---FCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp CTTHHHHHHHHHHHT---CCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 355778999999999 9 99999999999999999999999975
No 182
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.65 E-value=3.6e-05 Score=69.09 Aligned_cols=41 Identities=24% Similarity=0.473 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHcC
Q 015628 171 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 214 (403)
Q Consensus 171 ~~~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~G 214 (403)
++-+++|++|++|| |+|++|++|+.++.+|.+.|++||+.+
T Consensus 128 pee~eaI~rL~~mG---F~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 128 PEDDQAISRLCELG---FERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp HHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 45678899999999 999999999999999999999999875
No 183
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.60 E-value=8.7e-05 Score=58.76 Aligned_cols=70 Identities=13% Similarity=0.226 Sum_probs=58.9
Q ss_pred EEEEEe--CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC---CCcEEEeCCeecCCCCcccccccCCCcEEEE
Q 015628 2 KVFVKT--LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA---SQQMLIHQGKVLKDVTTLEENKVAENSFVVV 72 (403)
Q Consensus 2 kI~VKt--l~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~---~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v 72 (403)
+|+|.. ..++.|.+.+....||..|+..|.+.++-+ .+. ...|+.-++.+|.++..|.+|+|.+||.|.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~-~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVS-MPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCC-SCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCC-cCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 566664 578999999999999999999999999843 221 2457788999999999999999999999876
No 184
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.54 E-value=0.00013 Score=62.58 Aligned_cols=69 Identities=25% Similarity=0.243 Sum_probs=56.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-------------------------------------Cc
Q 015628 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-------------------------------------QQ 44 (403)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~-------------------------------------~Q 44 (403)
.|+|+.++|+..++.|+.+.+|.+++..|+.+.| ++.. ++
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kig---I~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 89 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIG---ITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQ 89 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHT---CCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhC---CCCcccccccccccccccccCchhhccccccccchhHHHHHHH
Confidence 3899999999999999999999999999999999 5533 44
Q ss_pred EEEe--CCeecCCCCcccccccCCCcEEEEE
Q 015628 45 MLIH--QGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 45 kLiy--~GkiL~D~~tLsd~gI~~~s~I~v~ 73 (403)
||-. .+..|+++++|.++||.++++|.|-
T Consensus 90 kL~~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 90 KLHTDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp SCCCSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred HhcccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 4422 2366788999999999999996543
No 185
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.52 E-value=1.3e-05 Score=79.88 Aligned_cols=74 Identities=11% Similarity=0.150 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 78 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k 78 (403)
++|+|++ +|+.+.+.|..++++..|++..+++.| ++...+|++|.|+.|.++.|.+++++++|++|.|+....+
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G---~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g 95 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (360)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhC---CCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCc
Confidence 3566776 677788899999999999999999999 8999999999999999999999999999999999987544
No 186
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.39 E-value=0.00054 Score=55.11 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=67.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEec
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k 76 (403)
|.|+|-..+++.+.|.|.++.++.++-+...+++| +.+++-.|.|++|.|+-+..+.-.||-+|..|.++.+.
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~g---l~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQD---FNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTT---CCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhC---CChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 67899999999999999999999999999999999 88888899999999988999999999999999988653
No 187
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.27 E-value=3.9e-05 Score=77.08 Aligned_cols=74 Identities=9% Similarity=0.116 Sum_probs=0.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEecCCC
Q 015628 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSKV 79 (403)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k~k~ 79 (403)
.|+|+. +|+.+.+.|..++++..||+..+++.| ++..+++|+|.|+.|.++.|.+++++.++++|.+++.....
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g---~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 456665 667778999999999999999999999 99999999999999999999999999999999999876543
No 188
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.20 E-value=0.0012 Score=52.05 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=58.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE--eCCeecC---CCCcccccccCCCcEEEEE
Q 015628 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK---DVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLi--y~GkiL~---D~~tLsd~gI~~~s~I~v~ 73 (403)
+|.||..+|+.+.-.+..++||.+|...|.. .+ ++....+|+ |-.|.|. .+++|.++|+.+..+|+|-
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KG---FPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TT---CCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cC---CCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 6889999999888889999999999999987 56 667888887 6678884 4689999999998888775
No 189
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.19 E-value=0.0032 Score=52.26 Aligned_cols=71 Identities=13% Similarity=0.209 Sum_probs=60.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE--eCCeecC--C-CCcccccccCCCcEEEEEEe
Q 015628 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK--D-VTTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLi--y~GkiL~--D-~~tLsd~gI~~~s~I~v~v~ 75 (403)
+|.||..+|+.+.-.+..++||.+|...|....+ .+....+|+ |-.|.|. | +++|.++|+.+..+|+|...
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVG---NTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHT---TSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccC---CCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 6899999999999999999999999999999877 556677886 6788886 3 68999999998877766543
No 190
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.18 E-value=0.00046 Score=49.96 Aligned_cols=42 Identities=29% Similarity=0.414 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhC-ChHHHHHHHHc-CCCC
Q 015628 173 LEATVQQILDMGGGSWDRETVIRALRAAYN-NPERAVEYLYS-GIPE 217 (403)
Q Consensus 173 ~e~~v~~i~~MG~~~f~R~qv~~ALrAafn-NPdRAvEyL~~-GIP~ 217 (403)
.-++++.|++|| |+++-|++||+..-| ..+-|+|||.- +.|+
T Consensus 9 n~qmlq~L~eMG---Fd~erae~Alk~Tg~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 9 NRQMLQELVNAG---CDQEMAGRALKQTGSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHHTSCCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHhCcccHHHHHHHHHHhcCCC
Confidence 457899999999 999999999999877 79999999975 4443
No 191
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=97.00 E-value=0.0008 Score=74.29 Aligned_cols=40 Identities=25% Similarity=0.543 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHhccCCC
Q 015628 361 EAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHE 400 (403)
Q Consensus 361 ~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~~~L~~~~~d 400 (403)
+.|..|.+|||++.++++|+.+|++|.+.|++|||++..|
T Consensus 722 e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~ 761 (854)
T 3ihp_A 722 DCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDD 761 (854)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCccc
Confidence 4488899999999999999999999999999999997654
No 192
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=96.92 E-value=0.00014 Score=67.67 Aligned_cols=73 Identities=21% Similarity=0.313 Sum_probs=16.5
Q ss_pred CHHHHHHHHHcHHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHH
Q 015628 312 NPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAA 391 (403)
Q Consensus 312 nP~l~~lI~~n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~~~lt~ee~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~a~ 391 (403)
|++.+++...|++.|.+...+-...- ... .. ..+-.+.|+||++|||+++.++.|+..|+||++.|+
T Consensus 143 n~eaa~~~~~d~~~f~~~ar~~t~~y--------a~~--~~---~~~~~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~ 209 (216)
T 2pwq_A 143 DAEVAKMYKENHALFVKTASVWTKTF--------ATG--PK---EEPREVIIKKITEMGFSEDQAKNALIKANWNETLAL 209 (216)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHHHH--------SCC--C----------------------------------------
T ss_pred cHHHHHHHHHCHHHHHHHHHHHHHHh--------cCC--Cc---ccchhhHHHHHHHcCCCHHHHHHHHHHcCCchHHHH
Confidence 67777888888888887753321000 000 00 012246799999999999999999999999999999
Q ss_pred HHHhcc
Q 015628 392 NYLLDH 397 (403)
Q Consensus 392 ~~L~~~ 397 (403)
+.||+.
T Consensus 210 ~~l~~~ 215 (216)
T 2pwq_A 210 NTLLEN 215 (216)
T ss_dssp ------
T ss_pred HHHhcC
Confidence 999974
No 193
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=96.91 E-value=0.00087 Score=63.82 Aligned_cols=43 Identities=30% Similarity=0.431 Sum_probs=40.1
Q ss_pred cCCccHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHc
Q 015628 168 VAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 213 (403)
Q Consensus 168 ~~g~~~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~ 213 (403)
+.++++++.|++|++|| |+|++|+.||+..-.|-++|+|||+.
T Consensus 210 ~~~~~~~~~v~~l~~mg---f~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 210 VSSPEYTKKIENLCAAG---FDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp CCCHHHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34678999999999999 99999999999999999999999985
No 194
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.54 E-value=0.0053 Score=52.16 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=58.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE--eCCeec--CC-CCcccccccCCCcEEEEEE
Q 015628 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVL--KD-VTTLEENKVAENSFVVVML 74 (403)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLi--y~GkiL--~D-~~tLsd~gI~~~s~I~v~v 74 (403)
+|.||..+|+.+.-.+..++||.+|...|... + ++....+|+ |-.|.| .| +++|.++|+.+...|+|..
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~---~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-G---YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-H---CCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 68899999999988999999999999999876 6 666778887 678988 34 7899999999988777653
No 195
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.25 E-value=0.0056 Score=45.40 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=35.3
Q ss_pred HHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhccCCCC
Q 015628 361 EAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDHMHEF 401 (403)
Q Consensus 361 ~ai~rL~~l--GF~~~~~~~a~~ac~~ne~~a~~~L~~~~~d~ 401 (403)
++|+.|.+| ++++..+..+|.+|++|.+.|.+.||+-.++.
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP 53 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCC
Confidence 458889999 56899999999999999999999999865543
No 196
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.15 E-value=0.028 Score=46.44 Aligned_cols=69 Identities=16% Similarity=0.130 Sum_probs=56.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE--eCCeecC--CCCcccccccCCCcEEEEEE
Q 015628 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLK--DVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLi--y~GkiL~--D~~tLsd~gI~~~s~I~v~v 74 (403)
+|.||..+|+.+.-.+..++||.+|...|... + +.....+|+ |-.|.|. .+++|.++||.+..+|+|..
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~---~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-G---YHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-T---CCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 68899999998888899999999999999865 4 456678886 6688886 36899999999988776643
No 197
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=96.05 E-value=0.0045 Score=57.46 Aligned_cols=77 Identities=13% Similarity=0.140 Sum_probs=48.5
Q ss_pred hCHHHHHHHHHcHHHHHHHhcCCCCCC-CCcccccccccCCccccCCHHHHHHHHHHHHcCCChHHHHHHHHHhCCCHHH
Q 015628 311 QNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEEL 389 (403)
Q Consensus 311 ~nP~l~~lI~~n~e~Fl~~l~~~~~~~-~g~~~~~~~~~~~~~~~lt~ee~~ai~rL~~lGF~~~~~~~a~~ac~~ne~~ 389 (403)
.|++..++...|++.|.+...+-...- .....+..+.. ....+-..+.+.|+||++|||+++.|++||..|++|+..
T Consensus 122 ln~eaa~~~~~d~~~f~~~ar~~t~~yA~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~mg~~~~~~~~al~~~~~~~~~ 199 (215)
T 1tte_A 122 QDAEVAQHYLRDRESFNKTAALWTRLYASETSNGQKGNV--EESDLYGIDHDLIDEFESQGFEKDKIVEVLRRLGVKSLD 199 (215)
T ss_dssp SCHHHHHHHHHCHHHHHHHHHHHHHHSSCCCSCCSSCCC--SCSSCCCCSHHHHHHHHHHTCCHHHHHHHHHHSCCSSCC
T ss_pred cCHHHHHHHHHCHHHHHHHHHHHHHHhccCCCcccccch--hhhhhccccHHHHHHHHHcCCCHHHHHHHHHHcCCCccc
Confidence 467777788888888877643211000 00000000000 123345566789999999999999999999999999843
No 198
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.96 E-value=0.021 Score=48.62 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=54.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE--eCCeecCC-CCcccccccCCCcE
Q 015628 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQGKVLKD-VTTLEENKVAENSF 69 (403)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLi--y~GkiL~D-~~tLsd~gI~~~s~ 69 (403)
+|.||..+|+.+.-.+..++||.+|...|...... +......|+ |-.|.|.| +++|.++|+.+...
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~--~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav 122 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPA--MAATSFVLMTTFPNKELADENQTLKEANLLNAVI 122 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSG--GGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcC--CCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence 58999999999999999999999999999886321 445677786 67899976 68999999998433
No 199
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.41 E-value=0.035 Score=42.07 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=42.6
Q ss_pred cccCCHHHHHHHHHHHHc-C-CChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015628 352 AVTVTPEEREAIERLEAM-G-FDRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 352 ~~~lt~ee~~ai~rL~~l-G-F~~~~~~~a~~ac~~ne~~a~~~L~~~~ 398 (403)
...||.+..+.|.+.+++ | -+...|++.+.+|+||.+.|++..|++.
T Consensus 11 ~~~Ls~~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~ 59 (67)
T 2dam_A 11 ERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQ 59 (67)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSS
T ss_pred hhhcChhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 347899999999999998 8 6899999999999999999999999863
No 200
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.17 E-value=0.041 Score=40.98 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=42.5
Q ss_pred cccCCHHHHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015628 352 AVTVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 352 ~~~lt~ee~~ai~rL~~l-GF~~~~~~~a~~ac~~ne~~a~~~L~~~~ 398 (403)
...|++...+.|.+.+++ |-++..|++.+.+|+||.+.|++..|++.
T Consensus 8 ~~~~s~~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~ 55 (62)
T 2dal_A 8 GSAASSALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGG 55 (62)
T ss_dssp CCSSCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSC
T ss_pred hhhcCccHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 457888888899999997 89999999999999999999999999864
No 201
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.95 E-value=0.021 Score=41.26 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHhccCC
Q 015628 357 PEEREAIERLEAMGFDRALVLEVFFACNK-NEELAANYLLDHMH 399 (403)
Q Consensus 357 ~ee~~ai~rL~~lGF~~~~~~~a~~ac~~-ne~~a~~~L~~~~~ 399 (403)
++-+.-++.|.+||||++.|..|+-..+. ..+.|..||+.-.+
T Consensus 7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~~~ 50 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMSG 50 (54)
T ss_dssp SCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 33445599999999999999999988764 89999999986433
No 202
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=94.95 E-value=0.023 Score=42.05 Aligned_cols=39 Identities=28% Similarity=0.356 Sum_probs=36.6
Q ss_pred HHHHHHHHHHc--CCCCCCHHHHHHHHHHhhCChHHHHHHHHcC
Q 015628 173 LEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 214 (403)
Q Consensus 173 ~e~~v~~i~~M--G~~~f~R~qv~~ALrAafnNPdRAvEyL~~G 214 (403)
.|+.|..|.+| . ++++.|+..|++.-+|.|+|++.|+.-
T Consensus 9 ~ee~l~~L~emFP~---ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 9 SEEDLKAIQDMFPN---MDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp CHHHHHHHHHHCSS---SCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 58899999999 5 899999999999999999999999975
No 203
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=94.69 E-value=0.052 Score=37.52 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=35.9
Q ss_pred HHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015628 359 EREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 359 e~~ai~rL~~l-GF~~~~~~~a~~ac~~ne~~a~~~L~~~~ 398 (403)
..+.|...+++ |-++..+++-+.+|+||.+.|++..|+++
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 45679999887 89999999999999999999999999864
No 204
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=94.60 E-value=0.006 Score=56.69 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHcCC
Q 015628 172 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGI 215 (403)
Q Consensus 172 ~~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~GI 215 (403)
.++..|+++++|| |+|+++++||+..--+-++|+|.|+.|+
T Consensus 176 ~~~~~v~~~~~mg---f~~~~~~~al~~~~~~~~~~~~~l~~~~ 216 (216)
T 2pwq_A 176 PREVIIKKITEMG---FSEDQAKNALIKANWNETLALNTLLENS 216 (216)
T ss_dssp --------------------------------------------
T ss_pred chhhHHHHHHHcC---CCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 3578999999999 9999999999999999999999999884
No 205
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=94.60 E-value=0.095 Score=40.30 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=46.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEE
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~ 73 (403)
|+|+||........+++....||.+|-++ .| +++...-+..+|+++..+. +.+||.|.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lg---l~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VD---LSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TC---CCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cC---CCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 99999977445556899999999998765 67 8888887788999987665 2348888766
No 206
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.43 E-value=0.17 Score=40.14 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=58.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEe---CCeecCCCCcccccccCCCcEEEEEEecC
Q 015628 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH---QGKVLKDVTTLEENKVAENSFVVVMLTKS 77 (403)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy---~GkiL~D~~tLsd~gI~~~s~I~v~v~k~ 77 (403)
++.|....-+++.+.|+|..++.+|--.|.++.. +.++.-.|.. .+..|+-+++|.||||++ ++.+=.++
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kce---fdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~~~ 84 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCE---FDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDVNR 84 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTT---CCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEECCC
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhccc---CChhhEEEecCCCCCcccchhcchhhhhhhh---hheecccc
Confidence 5777777888899999999999999999999977 7788887764 466788899999999997 66665444
No 207
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=94.24 E-value=0.34 Score=47.71 Aligned_cols=93 Identities=16% Similarity=0.296 Sum_probs=52.5
Q ss_pred HHHHHHHhCccchHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHH-HHHH-
Q 015628 289 ALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREA-IERL- 366 (403)
Q Consensus 289 ~lR~~vq~NP~lL~~~lq~i~~~nP~l~~lI~~n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~~~lt~ee~~a-i~rL- 366 (403)
.+..+|..+|.+|..=+.. |..+= +|++-|+..... ....-...|..+.++.+.... +.-|
T Consensus 94 ~V~kiL~k~P~lL~~s~e~-----------L~~~l-~fL~~lGl~~~~-----i~~ll~~~P~lL~~s~e~i~~~v~~L~ 156 (335)
T 4fp9_B 94 PVCVVLKKSPQLLKLPIMQ-----------MRKRS-SYLQKLGLGEGK-----LKRVLYCCPEIFTMRQQDINDTVRLLK 156 (335)
T ss_dssp HHHHHHHHCGGGGGSCHHH-----------HHHHH-HHHHHTTCTTTT-----HHHHHHHCGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhChhhccCCHHH-----------HHHHH-HHHHHcCCCHHH-----HHHHHHhCchhhccChHHHHHHHHHHH
Confidence 4567888899887622222 32332 455555443211 111111123467778877555 4545
Q ss_pred HHcCCChHHHHHHHHHhC-------CCHHHHHHHHhccC
Q 015628 367 EAMGFDRALVLEVFFACN-------KNEELAANYLLDHM 398 (403)
Q Consensus 367 ~~lGF~~~~~~~a~~ac~-------~ne~~a~~~L~~~~ 398 (403)
..|||+++++..++..|= .+..--.+||...+
T Consensus 157 ~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~M 195 (335)
T 4fp9_B 157 EKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRM 195 (335)
T ss_dssp HTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTT
T ss_pred HHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHh
Confidence 478999999999998883 23444455565543
No 208
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.02 E-value=0.074 Score=40.33 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=33.2
Q ss_pred HHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015628 360 REAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 360 ~~ai~rL~~l--GF~~~~~~~a~~ac~~ne~~a~~~L~~~ 397 (403)
.++++.|++| .+++..+..+|.+|++|.+.|++.||+-
T Consensus 19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4569999999 3479999999999999999999999963
No 209
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.92 E-value=0.11 Score=39.44 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=38.8
Q ss_pred CCccHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHcC
Q 015628 169 AGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 214 (403)
Q Consensus 169 ~g~~~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~G 214 (403)
.+.+++..|..|.+|= =.++++-|+..|++.-+|.|+||+-|+.-
T Consensus 14 ~~~~~~~~v~~L~~MF-P~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 14 RRLEFNQAMDDFKTMF-PNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCCSHHHHHHHHHHC-SSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHC-CCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4566899999999992 12799999999999999999999999863
No 210
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=93.88 E-value=0.19 Score=38.53 Aligned_cols=50 Identities=14% Similarity=0.341 Sum_probs=43.2
Q ss_pred cCCccHHHHHHHHHHc--CCCCCCHHHHHHHHHHhhCChHHHHHHHHcC-CCCCCC
Q 015628 168 VAGSNLEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG-IPEQTA 220 (403)
Q Consensus 168 ~~g~~~e~~v~~i~~M--G~~~f~R~qv~~ALrAafnNPdRAvEyL~~G-IP~~~~ 220 (403)
+.+.+.+..|.+|.++ - |....|.++|..--+|+|+.|.+|+.| +|.++.
T Consensus 8 ~~~~~l~s~I~qV~DLfPd---LG~gfi~~~L~~y~~nvE~vin~LLE~~LPp~L~ 60 (71)
T 2di0_A 8 MCGVELDSLISQVKDLLPD---LGEGFILACLEYYHYDPEQVINNILEERLAPTLS 60 (71)
T ss_dssp CSSHHHHHHHHHHHHHCCS---SCHHHHHHHHHHTTTCHHHHHHHHHTTCCCTTTT
T ss_pred CcHHHHHHHHHHHHHHccc---CCHHHHHHHHHHhCCCHHHHHHHHHccCCCHHHH
Confidence 4677899999999997 4 679999999999778999999999998 777653
No 211
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=93.79 E-value=0.086 Score=37.53 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=35.8
Q ss_pred HHHHHHHHHHc--CCCCCCHHHHHHHHHHhhCChHHHHHHHHcC
Q 015628 173 LEATVQQILDM--GGGSWDRETVIRALRAAYNNPERAVEYLYSG 214 (403)
Q Consensus 173 ~e~~v~~i~~M--G~~~f~R~qv~~ALrAafnNPdRAvEyL~~G 214 (403)
.+..|+.|.+| . -++++|+++|+++-+|-|||+..|+++
T Consensus 4 ~e~~v~~L~EMFP~---~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 4 HESKLSILMDMFPA---ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHHCSS---SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 46789999999 4 589999999999999999999999987
No 212
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=93.78 E-value=0.29 Score=40.66 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=45.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC------CCcEEEe----CCeecCCC-------------CcccccccCC
Q 015628 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH----QGKVLKDV-------------TTLEENKVAE 66 (403)
Q Consensus 10 g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~------~~QkLiy----~GkiL~D~-------------~tLsd~gI~~ 66 (403)
+..+.+.|-..+||.++|+||-...-+. +|. +.+.|-| .|++|.|. .||..|+|.+
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~-~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRG-QPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcC-CccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 4557788889999999999999776432 443 4555654 35778762 3688999999
Q ss_pred CcEEEEEE
Q 015628 67 NSFVVVML 74 (403)
Q Consensus 67 ~s~I~v~v 74 (403)
|.+|.++-
T Consensus 102 gatl~l~~ 109 (111)
T 4e71_A 102 GATLILSK 109 (111)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 99998764
No 213
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=93.67 E-value=0.36 Score=36.28 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=44.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v 74 (403)
|+|+|.... ....+++....||.+|.+++ + ++.....+..+|+++..+. -+++||.|.++-
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~---~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----E---IPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----T---CCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----C---CCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 567776432 23456777778999999875 4 5566777889999997665 578899998873
No 214
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=92.80 E-value=0.079 Score=58.41 Aligned_cols=40 Identities=40% Similarity=0.684 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHcC
Q 015628 172 NLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 214 (403)
Q Consensus 172 ~~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~G 214 (403)
..++.|..|++|| |++++.++||++.-||.+|||+||.+.
T Consensus 719 ~~~e~i~~l~~mG---f~~~~a~~aL~~t~~~~eraidwlfs~ 758 (854)
T 3ihp_A 719 PPEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSH 758 (854)
T ss_dssp CCHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcC---CCHHHHHHHHHhhcCcHHHHHHhhhcC
Confidence 3578899999999 999999999999999999999999985
No 215
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=92.77 E-value=0.32 Score=41.86 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=47.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC------CCcEEEe----CCe-ecCCC-------------CcccccccCC
Q 015628 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH----QGK-VLKDV-------------TTLEENKVAE 66 (403)
Q Consensus 11 ~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~------~~QkLiy----~Gk-iL~D~-------------~tLsd~gI~~ 66 (403)
..+.+.|-..+||.++|+||-...-++ +|. ++.-|-+ .|+ +|.|. .||..|+|.+
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~-~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcC-CccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 457888889999999999999887654 543 2344544 344 47663 2799999999
Q ss_pred CcEEEEEEec
Q 015628 67 NSFVVVMLTK 76 (403)
Q Consensus 67 ~s~I~v~v~k 76 (403)
|.+|.++-+.
T Consensus 120 ga~l~l~~~~ 129 (138)
T 2r2o_A 120 GATVALVPCL 129 (138)
T ss_dssp TCEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 9999887654
No 216
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=92.75 E-value=0.43 Score=43.91 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=50.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CcEEE--e-CC--eecCC-CCcccccccCCCcEEEEEEec
Q 015628 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLI--H-QG--KVLKD-VTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 13 ~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~-~QkLi--y-~G--kiL~D-~~tLsd~gI~~~s~I~v~v~k 76 (403)
+.+.++..+||.+|++++...++ ++.+ ..||- | .+ ..|.| +++|.+++|.++..|+|=++.
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFS---IPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTT---CCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred eEEEEcccchHHHHHHHHHHHhC---CCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 56788999999999999999999 8886 68883 4 22 45666 579999999999999888764
No 217
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=92.56 E-value=0.17 Score=35.95 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=34.8
Q ss_pred HHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhccCC
Q 015628 360 REAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDHMH 399 (403)
Q Consensus 360 ~~ai~rL~~l--GF~~~~~~~a~~ac~~ne~~a~~~L~~~~~ 399 (403)
.+.|+.|.+| .-++.++..+|.+|++|.+.|.+.|++...
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~ 46 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEND 46 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 3568999999 457999999999999999999999998643
No 218
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=92.43 E-value=0.63 Score=43.20 Aligned_cols=61 Identities=13% Similarity=0.249 Sum_probs=50.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CcEEEe-C----CeecCC-CCcccccccCCCcEEEEEEec
Q 015628 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIH-Q----GKVLKD-VTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 13 ~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~-~QkLiy-~----GkiL~D-~~tLsd~gI~~~s~I~v~v~k 76 (403)
+++.++..+||.+|++++...++ ++.+ ..||-. . ...|.| +.+|.+++|.++..|+|=++.
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFN---IPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTT---CCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred EEEEecccCcHHHHHHHHHHHhC---CCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 55678999999999999999999 8887 688842 2 346766 589999999999999888764
No 219
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=92.35 E-value=0.19 Score=37.72 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=32.2
Q ss_pred HHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015628 362 AIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 362 ai~rL~~l-GF~~~~~~~a~~ac~~ne~~a~~~L~~~ 397 (403)
.|+.|.+. |....+|.+|+..||+|.+.|..||-+.
T Consensus 12 ~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 12 LLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 38888876 9999999999999999999999999654
No 220
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=91.88 E-value=0.91 Score=36.20 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=47.3
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCcHHHHHHHHHHHhCC--CCC------CCCCcEEEeCCeecCCCCcccccccC
Q 015628 1 MKVFVKTLK------G-THFEIEVKPEDKVSDVKKNIETVQGS--DVY------PASQQMLIHQGKVLKDVTTLEENKVA 65 (403)
Q Consensus 1 MkI~VKtl~------g-~~~~ieV~~~~TV~dLK~kI~~~~g~--~~i------p~~~QkLiy~GkiL~D~~tLsd~gI~ 65 (403)
|+|+||... | ....+++....||.+|.+.+...... ..+ ......+..+|+.... ++-|+
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 678888653 3 46678887789999999999877421 000 0134567788887753 55688
Q ss_pred CCcEEEEE
Q 015628 66 ENSFVVVM 73 (403)
Q Consensus 66 ~~s~I~v~ 73 (403)
+||.|.++
T Consensus 85 dGDeV~i~ 92 (98)
T 1vjk_A 85 DGDVVGVF 92 (98)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99998876
No 221
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=90.89 E-value=0.99 Score=38.27 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=47.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC------CCcEEEe----CCe-ecCCC-------------CcccccccC
Q 015628 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH----QGK-VLKDV-------------TTLEENKVA 65 (403)
Q Consensus 10 g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~------~~QkLiy----~Gk-iL~D~-------------~tLsd~gI~ 65 (403)
+..+.+.|-..+||.++|+||-...-+. +|. +.+.|-| .|+ +|.|. .||..|+|.
T Consensus 16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 16 MDSLSVRAMDTDTLTQVKEKILEAFCKN-VPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHSTT-SCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCceeeeeeccCchhhhhHHHHHHHhcc-CCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 4557788889999999999999876433 443 4556654 234 46652 368899999
Q ss_pred CCcEEEEEEe
Q 015628 66 ENSFVVVMLT 75 (403)
Q Consensus 66 ~~s~I~v~v~ 75 (403)
+|.+|.+..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999988754
No 222
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=90.76 E-value=0.95 Score=42.41 Aligned_cols=41 Identities=20% Similarity=0.393 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH-------hh-CChHHHHHHHHc-CCCC
Q 015628 174 EATVQQILDMGGGSWDRETVIRALRA-------AY-NNPERAVEYLYS-GIPE 217 (403)
Q Consensus 174 e~~v~~i~~MG~~~f~R~qv~~ALrA-------af-nNPdRAvEyL~~-GIP~ 217 (403)
..+|+.|.+|| ++..++++..+. .. .|...-++||.. |++.
T Consensus 6 s~~l~~L~~lG---v~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~ 55 (270)
T 3m66_A 6 SETLQKLVLLG---VDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIED 55 (270)
T ss_dssp HHHHHHHHHTT---CCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCG
T ss_pred hHHHHHHHHcC---CCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCH
Confidence 46899999999 999999876555 32 256668899977 7664
No 223
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=90.75 E-value=0.39 Score=35.99 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=33.1
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhhCChHHHHHHHHc
Q 015628 175 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 213 (403)
Q Consensus 175 ~~v~~i~~M-G~~~f~R~qv~~ALrAafnNPdRAvEyL~~ 213 (403)
..|..|.++ | +...+|..||..+-+|.+.|++||..
T Consensus 11 ~~Vk~LRe~TG---ag~~dcKkAL~e~~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 11 ELLMKLRRKTG---YSFVNCKKALETCGGDLKQAEIWLHK 47 (64)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 579999996 8 89999999999999999999999963
No 224
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=90.70 E-value=0.64 Score=35.10 Aligned_cols=65 Identities=6% Similarity=0.183 Sum_probs=44.3
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCcHHHHHHHHHHHhCCCCCCC--CCcEEEeCCeecCCCCcccccccCCCcEEEEE
Q 015628 1 MKVFVKTLKGT-HFEIEVKPEDKVSDVKKNIETVQGSDVYPA--SQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 1 MkI~VKtl~g~-~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~--~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~ 73 (403)
|+|+||....- .-.+++ ...||.+|++.+....+ +.. ....+..+|+.+.+ .+.-+++||.|.++
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~---l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEG---LKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLL 68 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTT---TTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcC---HHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEE
Confidence 88999976431 134666 56799999999986533 221 34566678887543 24568899999887
No 225
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=90.25 E-value=0.67 Score=38.84 Aligned_cols=65 Identities=25% Similarity=0.360 Sum_probs=45.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC------CcEEEe-CC---e-ecCCC-------------CcccccccCC
Q 015628 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPAS------QQMLIH-QG---K-VLKDV-------------TTLEENKVAE 66 (403)
Q Consensus 11 ~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~------~QkLiy-~G---k-iL~D~-------------~tLsd~gI~~ 66 (403)
..+.+.|-..+||.++|+||-...-+. +|.+ .+.|-| .| + +|.|. .||..|+|.+
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKN-VPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcC-CCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 347778888999999999999776432 4433 445544 23 3 46552 3689999999
Q ss_pred CcEEEEEEec
Q 015628 67 NSFVVVMLTK 76 (403)
Q Consensus 67 ~s~I~v~v~k 76 (403)
|.+|.++.+.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999887543
No 226
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=89.84 E-value=0.14 Score=39.37 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=28.4
Q ss_pred HHhhCcHHHH--HHHHHHHhCccchHHHHHHHHhhCH-HHHHHHHHc
Q 015628 279 DFLRNSQQFQ--ALRTMVQANPQILQPMLQELGKQNP-HLMRLIQEH 322 (403)
Q Consensus 279 ~~Lr~~pqf~--~lR~~vq~NP~lL~~~lq~i~~~nP-~l~~lI~~n 322 (403)
+.+++||++. -|.++-++||++++ +.++|| +|+++|++-
T Consensus 20 ~~vqqNP~lL~~lLqqL~~~NPqL~q-----~I~~n~e~Fl~ll~e~ 61 (72)
T 1pve_A 20 QIIQQNPSLLPALLQQIGRENPQLLQ-----QISQHQEHFIQMLNEP 61 (72)
T ss_dssp HHHTTCGGGHHHHHHHHHTTCHHHHH-----HHHTTHHHHHHHHHSC
T ss_pred HHHHHCHHHHHHHHHHHHhHCHHHHH-----HHHHCHHHHHHHHcCC
Confidence 5566688864 56778899999876 556775 588888653
No 227
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=88.25 E-value=1.3 Score=43.41 Aligned_cols=71 Identities=13% Similarity=0.057 Sum_probs=53.3
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCC-CCCCCCcEEEe------CCeecCCCCcccccccCCCcEEEEEE
Q 015628 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSD-VYPASQQMLIH------QGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~-~ip~~~QkLiy------~GkiL~D~~tLsd~gI~~~s~I~v~v 74 (403)
+.|... +.+.++.++++.||.++..+|.++.... ..+.++--|.. +|+=|++.++|..|++.+++.|....
T Consensus 6 ~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 6 LKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 445543 6778899999999999999998886520 12345556655 45668889999999999999887664
No 228
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=87.84 E-value=0.57 Score=33.07 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=29.8
Q ss_pred HHHHHH--cCCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015628 363 IERLEA--MGFDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 363 i~rL~~--lGF~~~~~~~a~~ac~~ne~~a~~~L~~~ 397 (403)
|.+-.. -|=+|+..|+-+...+-|.++|+|-|++.
T Consensus 13 i~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T 2qho_B 13 ISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence 555444 38999999999999999999999999987
No 229
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=87.80 E-value=0.22 Score=37.01 Aligned_cols=36 Identities=22% Similarity=0.454 Sum_probs=25.2
Q ss_pred hhCcHHHH--HHHHHHHhCccchHHHHHHHHhhCHH-HHHHHHH
Q 015628 281 LRNSQQFQ--ALRTMVQANPQILQPMLQELGKQNPH-LMRLIQE 321 (403)
Q Consensus 281 Lr~~pqf~--~lR~~vq~NP~lL~~~lq~i~~~nP~-l~~lI~~ 321 (403)
+++||+.. -|.++-++||++++ +.++||+ |+++|++
T Consensus 20 vq~NP~~L~~lLqql~~~nP~l~~-----~I~~n~e~Fl~ll~e 58 (61)
T 2f4m_B 20 IQQNPSLLPALLQQIGRENPQLLQ-----QISQHQEHFIQMLNE 58 (61)
T ss_dssp HHHCGGGHHHHHHHHHHHCHHHHH-----HHHHSHHHHHHHHTS
T ss_pred HHHCHHHHHHHHHHHHhHCHHHHH-----HHHHCHHHHHHHHcc
Confidence 34478764 56778899999876 5567754 7887753
No 230
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.73 E-value=0.96 Score=33.95 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015628 358 EEREAIERLEAM-GFDRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 358 ee~~ai~rL~~l-GF~~~~~~~a~~ac~~ne~~a~~~L~~~~ 398 (403)
.+.+.|...+++ |=++..+++.+.+|+||-+.|++.+|++.
T Consensus 16 ~~q~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~ 57 (66)
T 2dzl_A 16 RHQVMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQET 57 (66)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 333579999887 89999999999999999999999999864
No 231
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=86.80 E-value=1.3 Score=43.07 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHH----HHhhCChHHHHHHHHc
Q 015628 173 LEATVQQILDMGGGSWDRETVIRAL----RAAYNNPERAVEYLYS 213 (403)
Q Consensus 173 ~e~~v~~i~~MG~~~f~R~qv~~AL----rAafnNPdRAvEyL~~ 213 (403)
.+.+|+.|.++| +++++++++- ..+-.|||.-++||..
T Consensus 19 ~~~~v~~L~s~G---l~~~~~~~~~p~l~~~s~~~~~~vl~fL~~ 60 (343)
T 3mva_O 19 NEDLLKNLLTMG---VDIDMARKRQPGVFHRMITNEQDLKMFLLS 60 (343)
T ss_dssp -CCHHHHHHHHT---CCHHHHHHHCGGGGGCSCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHcC---CCHHHHHHhCchhhccCcccHHHHHHHHHH
Confidence 456899999999 9999886652 1234589999999974
No 232
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=86.68 E-value=4.3 Score=31.33 Aligned_cols=56 Identities=9% Similarity=0.165 Sum_probs=41.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCC-----C-----CCcEEEeCCeecCCCCcccccccCCCcEEEEE
Q 015628 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYP-----A-----SQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 11 ~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip-----~-----~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~ 73 (403)
....+++....||.+|++.+...+.. +. . ....+..+|+.... ++-|++||.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~--~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPA--LESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGG--GHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcH--HHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEE
Confidence 56788888788999999999887531 10 0 12567778888765 4568889999887
No 233
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=85.93 E-value=0.98 Score=35.64 Aligned_cols=43 Identities=14% Similarity=0.116 Sum_probs=32.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE-eCC
Q 015628 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-HQG 50 (403)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLi-y~G 50 (403)
||.|- .++-.|-|.|..+.+..+||.||..+.. + +...|+ |++
T Consensus 14 KVK~y-y~DDIiAIrvP~di~~~~L~dKi~~RLk---~--~~~~l~~ykd 57 (85)
T 1ip9_A 14 KIKFY-YKDDIFALMLKGDTTYKELRSKIAPRID---T--DNFKLQTKLF 57 (85)
T ss_dssp EEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHT---S--SCEEEEECCS
T ss_pred EEEEE-ecCcEEEEECCCCCCHHHHHHHHHHHhc---c--cceEEEEecC
Confidence 44444 3466899999999999999999999987 4 566654 443
No 234
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=85.92 E-value=1.5 Score=34.45 Aligned_cols=45 Identities=9% Similarity=0.265 Sum_probs=37.6
Q ss_pred ccCCHHHHHH----HHHHHH-cC--CChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015628 353 VTVTPEEREA----IERLEA-MG--FDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 353 ~~lt~ee~~a----i~rL~~-lG--F~~~~~~~a~~ac~~ne~~a~~~L~~~ 397 (403)
-+|++.|++. ++.+.+ || .++.+.++|.++|+-|.+.|.+++|+.
T Consensus 24 ~~Ls~~d~arL~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 24 HQLSEIDQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 3588888876 455555 47 899999999999999999999999964
No 235
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=85.56 E-value=0.95 Score=37.55 Aligned_cols=69 Identities=12% Similarity=0.078 Sum_probs=42.6
Q ss_pred CEEEEEeCC------C--cEEEEEeCC---CCcHHHHHHHHHHHhCCCCCCCCCcEEEeC-Ce------ecCCCCc---c
Q 015628 1 MKVFVKTLK------G--THFEIEVKP---EDKVSDVKKNIETVQGSDVYPASQQMLIHQ-GK------VLKDVTT---L 59 (403)
Q Consensus 1 MkI~VKtl~------g--~~~~ieV~~---~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~-Gk------iL~D~~t---L 59 (403)
|+|+|+... | +.++|++.. ..||.+|...|.+.+. ..+.+|+.. |+ +|-++.. |
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~-----~~~~~lf~~~g~lr~~i~VlVN~~di~~l 86 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLL-----KERPELFIQGDSVRPGILVLINDADWELL 86 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTC-----CSCHHHHCCSSSCCSSEEEEESSSBHHHH
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHcc-----chhHhhCccCCcccCCeEEEECCeeeecc
Confidence 678888543 3 356788873 3699999999987752 233343322 22 2323332 2
Q ss_pred --cccccCCCcEEEEEE
Q 015628 60 --EENKVAENSFVVVML 74 (403)
Q Consensus 60 --sd~gI~~~s~I~v~v 74 (403)
.++-+++||.|.++-
T Consensus 87 ~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 87 GELDYQLQDQDSILFIS 103 (114)
T ss_dssp CTTTCBCCSSEEEEEEE
T ss_pred CCcCcCCCCCCEEEEeC
Confidence 357799999987764
No 236
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=85.30 E-value=0.91 Score=39.90 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcC-CChHHHHHHHHHhCCCHHHHHHHH
Q 015628 357 PEEREAIERLEAMG-FDRALVLEVFFACNKNEELAANYL 394 (403)
Q Consensus 357 ~ee~~ai~rL~~lG-F~~~~~~~a~~ac~~ne~~a~~~L 394 (403)
..-+.+++.|..+| |++++|++|+...++|++.|...|
T Consensus 100 ~~R~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 100 RTRRRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHH
Confidence 34456799999999 599999999999999999998876
No 237
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=85.02 E-value=1.5 Score=34.54 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=37.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCC
Q 015628 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG 50 (403)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~G 50 (403)
+|+|.. .-++.|.|..+.+..+|+.+|.++.+ ++.+..+|.|+.
T Consensus 7 ~VKV~~--~~tvairvp~~~~y~~L~~~l~~kL~---l~~~~~~LsYk~ 50 (83)
T 1oey_A 7 TLKVHY--KYTVVMKTQPGLPYSQVRDMVSKKLE---LRLEHTKLSYRP 50 (83)
T ss_dssp EEEEES--SSEEEEEECTTCCHHHHHHHHHHHTT---CCGGGCCEEECC
T ss_pred EEEEEE--EEEEEEECCCCCCHHHHHHHHHHHhC---CCcceeEEEeeC
Confidence 455553 36889999999999999999999999 888899999965
No 238
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=84.72 E-value=1.7 Score=34.40 Aligned_cols=57 Identities=9% Similarity=0.239 Sum_probs=40.7
Q ss_pred CCCcEEEEEeCCC-CcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015628 8 LKGTHFEIEVKPE-DKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 8 l~g~~~~ieV~~~-~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v 74 (403)
++|+. +++... .||.+|.+.+ + ++.....+..+|+++..+ ...+.-|++||.|.++-
T Consensus 25 vNGe~--~el~~~~~Tv~dLL~~L----~---~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 25 LNGKD--VKWKKDTGTIQDLLASY----Q---LENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp ETTEE--ECCSSSCCBHHHHHHHT----T---CTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred ECCEE--EECCCCCCcHHHHHHHh----C---CCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 45664 445665 8999999875 5 566777788999988543 33445689999998874
No 239
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=84.70 E-value=0.42 Score=34.65 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhc
Q 015628 358 EEREAIERLEAM--GFDRALVLEVFFACNKNEELAANYLLD 396 (403)
Q Consensus 358 ee~~ai~rL~~l--GF~~~~~~~a~~ac~~ne~~a~~~L~~ 396 (403)
|-.++|+.|++| .+|++.+.-+++++++|.+.|++.||+
T Consensus 11 e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 445679999999 689999999999999999999999986
No 240
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=83.92 E-value=2.9 Score=32.90 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=51.4
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEec
Q 015628 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 14 ~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k 76 (403)
...++-..++..||+.++.+.| +.-+.-.+...+..|+++++|.+-+|+-...|.+.+--
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~---i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQ---CSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHC---SCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhccccCcHHHHHHHHHHHhc---CCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 3455667789999999999999 78888888888888999999999999988888877653
No 241
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=82.50 E-value=3 Score=35.24 Aligned_cols=61 Identities=21% Similarity=0.219 Sum_probs=41.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh----CCCCCCCC----CcEEEe-C---CeecCC----------C----Cccccccc
Q 015628 11 THFEIEVKPEDKVSDVKKNIETVQ----GSDVYPAS----QQMLIH-Q---GKVLKD----------V----TTLEENKV 64 (403)
Q Consensus 11 ~~~~ieV~~~~TV~dLK~kI~~~~----g~~~ip~~----~QkLiy-~---GkiL~D----------~----~tLsd~gI 64 (403)
..+.+.|-..+||.++|+||-... + +|.. .+.|-| . |++|.| . .||..|+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~---~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V 115 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNG---SPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEI 115 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHS---SCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTC
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCC---CcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCC
Confidence 457888889999999999997553 4 5442 334433 1 234433 1 25788999
Q ss_pred CCCcEEEEEE
Q 015628 65 AENSFVVVML 74 (403)
Q Consensus 65 ~~~s~I~v~v 74 (403)
.+|.+|.++.
T Consensus 116 ~Dgatlal~k 125 (126)
T 3kuz_A 116 SNGSTIKVFK 125 (126)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCEEEEee
Confidence 9999997763
No 242
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=82.25 E-value=2.3 Score=32.40 Aligned_cols=44 Identities=14% Similarity=0.244 Sum_probs=36.2
Q ss_pred CCHHHHH-HHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015628 355 VTPEERE-AIERLEAM--GFDRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 355 lt~ee~~-ai~rL~~l--GF~~~~~~~a~~ac~~ne~~a~~~L~~~~ 398 (403)
++..+++ .|.++++| -+....+.+.+..+|.|.|.++|.|||+.
T Consensus 8 ~~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~ 54 (71)
T 2di0_A 8 MCGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER 54 (71)
T ss_dssp CSSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccC
Confidence 3444444 48899988 46799999999999999999999999964
No 243
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=82.21 E-value=1.1 Score=31.16 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=30.5
Q ss_pred HHHHHHHHHc-CCCh-HHHHHHHHHhCCCHHHHHHHHh
Q 015628 360 REAIERLEAM-GFDR-ALVLEVFFACNKNEELAANYLL 395 (403)
Q Consensus 360 ~~ai~rL~~l-GF~~-~~~~~a~~ac~~ne~~a~~~L~ 395 (403)
.+.|..++++ |-+. .+|++-+.+|+||-+.|++-.|
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 3568899998 9876 9999999999999999987543
No 244
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=81.90 E-value=1.4 Score=31.56 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCChHHH--HHHHHHhCCCHHHHHHHHh
Q 015628 359 EREAIERLEAMGFDRALV--LEVFFACNKNEELAANYLL 395 (403)
Q Consensus 359 e~~ai~rL~~lGF~~~~~--~~a~~ac~~ne~~a~~~L~ 395 (403)
=.++|.++.+|||+-+-- -+.+.+++.|...|.+.|-
T Consensus 10 l~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 10 LIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhh
Confidence 357899999999976655 4899999999999998763
No 245
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=81.46 E-value=4.1 Score=31.77 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=43.9
Q ss_pred CEEEEEeCC------CcEEEEEeCCCCcHHHHHHHHHHHhCCC--CC-C-------CCCcEEEeCCeecCCCCccccccc
Q 015628 1 MKVFVKTLK------GTHFEIEVKPEDKVSDVKKNIETVQGSD--VY-P-------ASQQMLIHQGKVLKDVTTLEENKV 64 (403)
Q Consensus 1 MkI~VKtl~------g~~~~ieV~~~~TV~dLK~kI~~~~g~~--~i-p-------~~~QkLiy~GkiL~D~~tLsd~gI 64 (403)
|+|+||... |+...++++ ..||.+|++.+..++..- .+ . .....+..+|+...+..-+ +.-|
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~~-~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSAS-GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEEC-CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEecC-CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCC
Confidence 788888542 333346654 579999999998875310 00 0 0134566788776542222 4568
Q ss_pred CCCcEEEEEE
Q 015628 65 AENSFVVVML 74 (403)
Q Consensus 65 ~~~s~I~v~v 74 (403)
++||.|.++-
T Consensus 79 ~~gDeV~i~P 88 (93)
T 3dwg_C 79 ADGDSVTILP 88 (93)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCEEEEEC
Confidence 9999998873
No 246
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=81.21 E-value=4.3 Score=32.21 Aligned_cols=68 Identities=9% Similarity=0.133 Sum_probs=45.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CcEEEeCCeecCCCCc----------ccccccCCCcEE
Q 015628 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIHQGKVLKDVTT----------LEENKVAENSFV 70 (403)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~-~QkLiy~GkiL~D~~t----------Lsd~gI~~~s~I 70 (403)
+|++. .+|..+.+.|+++.+..+|.++|...++ +... ...|-|.... .|-.+ |.-|.+..++.|
T Consensus 8 kvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~---~~~~~~f~lky~DEe-GD~itisSd~EL~eAl~l~~~n~~~~l 82 (89)
T 1vd2_A 8 RVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCS---FDNEQLFTMKWIDEE-GDPCTVSSQLELEEAFRLYELNKDSEL 82 (89)
T ss_dssp EEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTT---CCSSCCEEEEECCSS-SCCEECCSHHHHHHHHHHHHHTSCCCE
T ss_pred EEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhC---CCCCCeEEEEEECCC-CCcccccCHHHHHHHHHHHHccCCCCE
Confidence 34444 4678889999999999999999999988 6543 4677786542 22222 333455556655
Q ss_pred EEEE
Q 015628 71 VVML 74 (403)
Q Consensus 71 ~v~v 74 (403)
+++|
T Consensus 83 ~ihv 86 (89)
T 1vd2_A 83 LIHV 86 (89)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 247
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=80.72 E-value=2.2 Score=31.38 Aligned_cols=61 Identities=7% Similarity=0.202 Sum_probs=41.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v 74 (403)
|+|+| +|+.+ ++....||.+|.+.+ + ++.....+..+|+++..+ ...+.-+++||.|.++-
T Consensus 1 m~i~v---Ng~~~--~~~~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 1 MQILF---NDQAM--QCAAGQTVHELLEQL----D---QRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp CCEEE---SSCEE--CCCTTCCHHHHHHHH----T---CCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEE
T ss_pred CEEEE---CCEEE--EcCCCCcHHHHHHHc----C---CCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEe
Confidence 55544 46654 556778999999876 4 556677778899988542 12234578899988773
No 248
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=80.64 E-value=1.6 Score=33.22 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=12.7
Q ss_pred hCccchHHHHHHHHhhCHHHHHHHHHcH
Q 015628 296 ANPQILQPMLQELGKQNPHLMRLIQEHQ 323 (403)
Q Consensus 296 ~NP~lL~~~lq~i~~~nP~l~~lI~~n~ 323 (403)
+||++. .+|++|. +||..++-...||
T Consensus 27 ~DP~~~-~~lq~~~-~NP~~~~k~~~nP 52 (71)
T 2llw_A 27 QDPVMQ-SILQQAQ-QNPAALQEHMKNP 52 (71)
T ss_dssp TCTHHH-HHHHHHH-HCHHHHHHHHHSH
T ss_pred CCHHHH-HHHHHHH-HCHHHHHHHHhCH
Confidence 555433 3444433 3555555555555
No 249
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=80.07 E-value=6.3 Score=37.03 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=53.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CcEEEe---CCe--ecCCCCcccccccCCCcEEEEEE
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIH---QGK--VLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~-~QkLiy---~Gk--iL~D~~tLsd~gI~~~s~I~v~v 74 (403)
|.|.|..++| ++.+.|+.+.|+.+|-+.|....| +... -.=|.| +|. -|+.++.|.+.+++.+..+.+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIG---LREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHT---CCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcC---CCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEE
Confidence 4688898988 688999999999999999999999 5432 223433 342 36777888887766666666655
Q ss_pred ecC
Q 015628 75 TKS 77 (403)
Q Consensus 75 ~k~ 77 (403)
+++
T Consensus 78 r~k 80 (294)
T 1ef1_A 78 RAK 80 (294)
T ss_dssp EES
T ss_pred EEE
Confidence 543
No 250
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=79.88 E-value=3.3 Score=30.49 Aligned_cols=62 Identities=18% Similarity=0.078 Sum_probs=41.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v 74 (403)
|+|+|+..+|+. +++....|+.+|-+.|....+ ....-...+|++.+-+ +-|++|+.|-++-
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~-----~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG-----DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH-----HTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc-----cceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 888998778876 456678999999888743332 1122224688876554 4455677777764
No 251
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=79.51 E-value=1.9 Score=32.80 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=42.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v 74 (403)
|+|+| +|+.+. + ...||.+|.+. .+ +++...-+.++|.++..+ ...++-+++||.|-++-
T Consensus 1 M~I~v---NG~~~e--~-~~~Tl~~LL~~----l~---~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 1 MLVTI---NGEQRE--V-QSASVAALMTE----LD---CTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCEEE---TTEEEC--C-CCSBHHHHHHH----TT---CCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEEC
T ss_pred CEEEE---CCEEEE--c-CCCcHHHHHHH----cC---CCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEc
Confidence 55555 477554 4 56899998864 46 777788888999988532 34455688999998874
No 252
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=79.29 E-value=4.7 Score=34.11 Aligned_cols=51 Identities=25% Similarity=0.336 Sum_probs=37.1
Q ss_pred CCcHHHHHHHHHHHhCCCCCCCCCcEEEe--CCeec-----CC--CCcccccccCCCcEEEEEE
Q 015628 20 EDKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVL-----KD--VTTLEENKVAENSFVVVML 74 (403)
Q Consensus 20 ~~TV~dLK~kI~~~~g~~~ip~~~QkLiy--~GkiL-----~D--~~tLsd~gI~~~s~I~v~v 74 (403)
..|+.+|-+.|..++| +. +.+-++- ..++| +| +++|+++||+.|++|.|+=
T Consensus 19 ~~TL~dLV~~l~~~~g---y~-~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYS---YP-QDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHT---CC-SSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcC---CC-CcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 4799999888988888 54 2444432 23444 23 5899999999999998874
No 253
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=79.17 E-value=6.9 Score=37.21 Aligned_cols=73 Identities=15% Similarity=0.089 Sum_probs=52.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-CcEEEe--CCe--ecCCCCcccccccCCCcEEEEEEe
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-QQMLIH--QGK--VLKDVTTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~-~QkLiy--~Gk--iL~D~~tLsd~gI~~~s~I~v~v~ 75 (403)
+.+.|..++| ++.+.|+.+.|+.+|-+.|....| +... -.=|.| +|. -|+.++.|.+.+++.+..+.+..+
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLG---LRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT---CCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhC---CCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 3578888898 788999999999999999999999 5432 223333 443 377788888877666665655555
Q ss_pred cC
Q 015628 76 KS 77 (403)
Q Consensus 76 k~ 77 (403)
++
T Consensus 99 ~k 100 (314)
T 1h4r_A 99 AK 100 (314)
T ss_dssp ES
T ss_pred EE
Confidence 43
No 254
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=79.13 E-value=1.9 Score=33.16 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=43.6
Q ss_pred CEEEEEeCCCcEEEEEeC--CCCcHHHHHHHHHHHhCCCCCC-CCCcEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015628 1 MKVFVKTLKGTHFEIEVK--PEDKVSDVKKNIETVQGSDVYP-ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~--~~~TV~dLK~kI~~~~g~~~ip-~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v 74 (403)
|+|+|. |+.+. +. ...||.+|.+.+ + ++ ....-+.++|.++..+ ...++-+++||.|-++-
T Consensus 1 M~I~vN---Ge~~e--~~~~~~~Tl~~LL~~l----~---~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 1 MNLTVN---GKPST--VDGAESLNVTELLSAL----K---VAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLY 64 (78)
T ss_dssp CEEEET---TEEEE--CSSCSCEEHHHHHHHH----T---CSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECC
T ss_pred CEEEEC---CEEEE--cCCCCCCcHHHHHHHc----C---CCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEe
Confidence 666554 77554 45 568999998754 5 66 6677788999998543 45556788999988773
No 255
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=78.53 E-value=0.69 Score=38.19 Aligned_cols=69 Identities=10% Similarity=0.088 Sum_probs=42.1
Q ss_pred CEEEEEeCC------CcEEEEEeCC----CCcHHHHHHHHHHHhCCCCCCCCCcEEEe-CC--e------ecCCCCcc--
Q 015628 1 MKVFVKTLK------GTHFEIEVKP----EDKVSDVKKNIETVQGSDVYPASQQMLIH-QG--K------VLKDVTTL-- 59 (403)
Q Consensus 1 MkI~VKtl~------g~~~~ieV~~----~~TV~dLK~kI~~~~g~~~ip~~~QkLiy-~G--k------iL~D~~tL-- 59 (403)
|+|+||... |+...+++.. ..||.+|-..|.+.+. ..+-+|+. +| + +|-++..+
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~-----~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~ 79 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV-----KERPDLLVDQTGQTLRPGILVLVNSCDAEV 79 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC-----CSCHHHHBCSSSSSBCTTEEEEESSSBHHH
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc-----ccchhhEecCCCcccCCCeEEEECCeeeec
Confidence 678888654 3555677763 2599999988877743 23444432 23 2 34344333
Q ss_pred ---cccccCCCcEEEEEE
Q 015628 60 ---EENKVAENSFVVVML 74 (403)
Q Consensus 60 ---sd~gI~~~s~I~v~v 74 (403)
.+|-+++||.|.++-
T Consensus 80 l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 80 VGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp HTSSCCCCCSSCEEEEEE
T ss_pred cCCcccCCCCcCEEEEeC
Confidence 347799999977753
No 256
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=78.39 E-value=1.6 Score=38.38 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHH
Q 015628 174 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYL 211 (403)
Q Consensus 174 e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL 211 (403)
.+.|.+|++-| .|+|++|+.||+++-.|.++|+--|
T Consensus 103 ~~K~~eL~s~G--~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 103 RRKVQELQSLG--FGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHHHTT--CCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcC--CchHHHHHHHHHHcCCcHHHHHHHH
Confidence 34566777777 4599999999999999999999766
No 257
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=78.37 E-value=3.1 Score=33.07 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=26.0
Q ss_pred CEEEEEeC------C-C-cEEEEEeC--CCCcHHHHHHHHHHHhC
Q 015628 1 MKVFVKTL------K-G-THFEIEVK--PEDKVSDVKKNIETVQG 35 (403)
Q Consensus 1 MkI~VKtl------~-g-~~~~ieV~--~~~TV~dLK~kI~~~~g 35 (403)
|+|+||.. - | +..++++. ...||.+|+..+.++..
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~ 46 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMI 46 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTC
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCc
Confidence 67888753 2 2 45667776 67899999999998864
No 258
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=77.38 E-value=7.4 Score=41.07 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=45.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCC------CCCcEEEe----CCe-ecCCC-------------CcccccccCC
Q 015628 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYP------ASQQMLIH----QGK-VLKDV-------------TTLEENKVAE 66 (403)
Q Consensus 11 ~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip------~~~QkLiy----~Gk-iL~D~-------------~tLsd~gI~~ 66 (403)
..+.+.|-..|||.++|+||-...-+. +| ++..-|-| .|+ +|.|. .||..|+|.+
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKG-IPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 457788889999999999999775332 33 33445544 233 45552 3689999999
Q ss_pred CcEEEEEEec
Q 015628 67 NSFVVVMLTK 76 (403)
Q Consensus 67 ~s~I~v~v~k 76 (403)
|.+|.++-+.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999987543
No 259
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=77.01 E-value=2.3 Score=31.24 Aligned_cols=39 Identities=13% Similarity=0.183 Sum_probs=27.2
Q ss_pred hHHhhCcHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHH
Q 015628 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQE 321 (403)
Q Consensus 278 l~~Lr~~pqf~~lR~~vq~NP~lL~~~lq~i~~~nP~l~~lI~~ 321 (403)
+..+.++|+|.+.=+-+++||..+..++ +||.+.+.|+.
T Consensus 14 ~~~~m~dP~~~~~lq~i~~NP~~~~~~~-----~dP~v~~~~~~ 52 (62)
T 2lnm_A 14 VAMAFQNPRVQAALMECSENPMNIMKYQ-----NDKEVMDVFNK 52 (62)
T ss_dssp HHHHTTSHHHHHHHHHHTTCGGGHHHHT-----TCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHCHHHHHHHH-----hChHHHHHHHH
Confidence 3445577888877777888888776432 48888877753
No 260
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=76.01 E-value=6.8 Score=41.41 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=44.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC------CCcEEEe----CCe-ecCCC-------------CcccccccCC
Q 015628 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPA------SQQMLIH----QGK-VLKDV-------------TTLEENKVAE 66 (403)
Q Consensus 11 ~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~------~~QkLiy----~Gk-iL~D~-------------~tLsd~gI~~ 66 (403)
..+.+.|-..|||.++|+||-...-+. +|. +.+.|-| .|+ +|.|. .||..|+|.+
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 352 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 352 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCC
Confidence 347788889999999999999665322 443 3444544 233 46653 3799999999
Q ss_pred CcEEEEEEec
Q 015628 67 NSFVVVMLTK 76 (403)
Q Consensus 67 ~s~I~v~v~k 76 (403)
|.+|.++.+.
T Consensus 353 ga~v~L~p~~ 362 (644)
T 3hm6_X 353 GATVALVPCL 362 (644)
T ss_dssp TCEEEEEEC-
T ss_pred CcEEEEEecc
Confidence 9999876543
No 261
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=74.88 E-value=2 Score=31.70 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=25.1
Q ss_pred CccHHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Q 015628 170 GSNLEATVQQILDMGGGSWDRETVIRALRAAY 201 (403)
Q Consensus 170 g~~~e~~v~~i~~MG~~~f~R~qv~~ALrAaf 201 (403)
++..+++|.-|+.+| |.+.++.+|++...
T Consensus 14 ~~~~~ea~~AL~aLG---Y~~~ea~kav~~v~ 42 (62)
T 1ixs_A 14 SEAAEEAVMALAALG---FKEAQARAVVLDLL 42 (62)
T ss_dssp CHHHHHHHHHHHHTT---CCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 345678999999999 99999999998863
No 262
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=74.81 E-value=2.9 Score=29.87 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=32.5
Q ss_pred ccHHHHHHHHHHcCCCCCCHHH--HHHHHHHhhCChHHHHHHH
Q 015628 171 SNLEATVQQILDMGGGSWDRET--VIRALRAAYNNPERAVEYL 211 (403)
Q Consensus 171 ~~~e~~v~~i~~MG~~~f~R~q--v~~ALrAafnNPdRAvEyL 211 (403)
+..+++|.+|++|| |+-+- ..+.|.+.-.|-.+|++-|
T Consensus 8 ~rl~~al~qMl~MG---F~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 8 PRLIESLSQMLSMG---FSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHHHHHTTT---CCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHcC---CCccccHHHHHHHHccCCHHHHHHHh
Confidence 45789999999999 96554 4689999999999999987
No 263
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=74.75 E-value=4 Score=33.22 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=31.2
Q ss_pred cCCHHHHHHHHHHHH-cCCChHHHHHHHHHhCCCHHHHHHHH
Q 015628 354 TVTPEEREAIERLEA-MGFDRALVLEVFFACNKNEELAANYL 394 (403)
Q Consensus 354 ~lt~ee~~ai~rL~~-lGF~~~~~~~a~~ac~~ne~~a~~~L 394 (403)
.+++|| |+.+++ .|-+|..|++||..|++|.--|.-+|
T Consensus 63 ~i~~ed---i~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 63 EIPEDD---IELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCHHH---HHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCHHH---HHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 567777 555554 69999999999999999998887766
No 264
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=72.01 E-value=2.4 Score=38.93 Aligned_cols=23 Identities=13% Similarity=0.514 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015628 174 EATVQQILDMGGGSWDRETVIRALRA 199 (403)
Q Consensus 174 e~~v~~i~~MG~~~f~R~qv~~ALrA 199 (403)
+..|+++++|| |+|+.|+.||+-
T Consensus 170 ~~~v~~~~~mg---~~~~~~~~al~~ 192 (215)
T 1tte_A 170 HDLIDEFESQG---FEKDKIVEVLRR 192 (215)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHH
Confidence 67999999999 999999999964
No 265
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=71.99 E-value=9.4 Score=40.03 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=53.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC-CCcEEEe---CC--eecCCCCcccccccCCCcEEEEEE
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-SQQMLIH---QG--KVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~-~~QkLiy---~G--kiL~D~~tLsd~gI~~~s~I~v~v 74 (403)
|.|.|..++| ++.|.|+.+.|+.+|-..|+...| +.. +-.=|.| +| ..|+.++.|.+.+++.+..+.+..
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~Lg---L~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~F 80 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIG---LREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKF 80 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT---CCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcC---CCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEE
Confidence 4678888888 678999999999999999999999 532 2234444 22 346677888888777766666665
Q ss_pred ecCC
Q 015628 75 TKSK 78 (403)
Q Consensus 75 ~k~k 78 (403)
+++-
T Consensus 81 Rvkf 84 (575)
T 2i1j_A 81 RAKF 84 (575)
T ss_dssp EESS
T ss_pred EEEE
Confidence 5443
No 266
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=71.75 E-value=6.6 Score=29.21 Aligned_cols=54 Identities=7% Similarity=0.089 Sum_probs=39.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCc--EEEeCCeecCCCCcccccccCCCcEEEEE
Q 015628 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ--MLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 11 ~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~Q--kLiy~GkiL~D~~tLsd~gI~~~s~I~v~ 73 (403)
+...+++....||.+|.+.+...+.. .... .+..+|+....+ .-+++||.|.++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~----~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ 71 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ----INNKKFQVAVNEEFVQKS-----DFIQPNDTVALI 71 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG----GTTCCCEEEETTEEECTT-----SEECTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc----hhcceEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 35667777778999999999877431 1233 677899988653 568899998876
No 267
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=71.48 E-value=15 Score=28.99 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=41.6
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC-----C----Cc-------EEEeCCeecCCCC
Q 015628 1 MKVFVKTLK------G-THFEIEVKPEDKVSDVKKNIETVQGSDVYPA-----S----QQ-------MLIHQGKVLKDVT 57 (403)
Q Consensus 1 MkI~VKtl~------g-~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~-----~----~Q-------kLiy~GkiL~D~~ 57 (403)
|+|+||... | +.+.++ ..||.+|.+.+...+.. +.. . .. .+..+|+......
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~--l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~ 78 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPA--LKYVIFEKGDEKSEILILCGSINILINGNNIRHLE 78 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGG--GTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChh--HHHHHhcccccccceeccccccEEEECCEEccccC
Confidence 788888653 3 344444 58999999999877421 111 1 12 5667777663221
Q ss_pred cccccccCCCcEEEEE
Q 015628 58 TLEENKVAENSFVVVM 73 (403)
Q Consensus 58 tLsd~gI~~~s~I~v~ 73 (403)
-.++-+++||.|.++
T Consensus 79 -~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 79 -GLETLLKDSDEIGIL 93 (99)
T ss_dssp -STTSCCCTTEEEEEE
T ss_pred -CCCCCCCCCCEEEEE
Confidence 123458899998876
No 268
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=71.19 E-value=12 Score=36.36 Aligned_cols=70 Identities=23% Similarity=0.239 Sum_probs=50.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCC-CCCcEEEeCC---------eecCCCCcccccccCCCcEEE
Q 015628 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYP-ASQQMLIHQG---------KVLKDVTTLEENKVAENSFVV 71 (403)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip-~~~QkLiy~G---------kiL~D~~tLsd~gI~~~s~I~ 71 (403)
.+.|..++|....+.|+.+.|+.+|-..|+.+.| +. .+..-|.+.. +-|+-+++|.+.++.....++
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~ 163 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIG---ITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLL 163 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTT---CSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEE
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcC---CCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEE
Confidence 5788899999999999999999999999999998 43 2334454432 234556677776665555555
Q ss_pred EEE
Q 015628 72 VML 74 (403)
Q Consensus 72 v~v 74 (403)
+.+
T Consensus 164 frv 166 (371)
T 3ivf_A 164 LRR 166 (371)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 269
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=70.85 E-value=14 Score=29.94 Aligned_cols=74 Identities=19% Similarity=0.102 Sum_probs=50.6
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE--e----CCeecCCCCcccc----cccCCCcEEEE
Q 015628 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--H----QGKVLKDVTTLEE----NKVAENSFVVV 72 (403)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLi--y----~GkiL~D~~tLsd----~gI~~~s~I~v 72 (403)
|+|-..+|....|.|+..+|+.++-+++..+.++. ....--|+ + --+.|+|...|-+ +.+..+..+++
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~--~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F 89 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHAL--SDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCC--CCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCC--CCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEE
Confidence 45556789999999999999999999999998852 12222332 1 3377888766544 45666677766
Q ss_pred EEecCC
Q 015628 73 MLTKSK 78 (403)
Q Consensus 73 ~v~k~k 78 (403)
..+.-|
T Consensus 90 ~kr~~K 95 (100)
T 1wgr_A 90 RKNFAS 95 (100)
T ss_dssp CSCCSS
T ss_pred ecchhc
Confidence 544433
No 270
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=69.59 E-value=3.7 Score=33.17 Aligned_cols=59 Identities=14% Similarity=0.240 Sum_probs=39.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeC----Ce--------ecCC------CCcccccccCCCcEEEEE
Q 015628 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ----GK--------VLKD------VTTLEENKVAENSFVVVM 73 (403)
Q Consensus 12 ~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~----Gk--------iL~D------~~tLsd~gI~~~s~I~v~ 73 (403)
...|+|++++|+.+|-+.|.+.-. +....=-|.+. || .|+. +++|.++|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~---~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSAS---LQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTT---CCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChH---hhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 346899999999999999988533 22222223222 22 2322 477999999999998874
No 271
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=69.56 E-value=24 Score=26.21 Aligned_cols=57 Identities=5% Similarity=0.086 Sum_probs=37.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCC--CCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEE
Q 015628 11 THFEIEVKPEDKVSDVKKNIETVQGS--DVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 11 ~~~~ieV~~~~TV~dLK~kI~~~~g~--~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~ 73 (403)
..+.++ ....||.+|++.+...... ..+......+..+|+.... +.-+++||.|.++
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEE
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEe
Confidence 345555 5667999999998754210 0011234567789988753 4468899998887
No 272
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=68.15 E-value=6.9 Score=28.43 Aligned_cols=56 Identities=11% Similarity=0.230 Sum_probs=39.5
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015628 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 8 l~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v 74 (403)
++|+.+. + ...||.+|.+.+ + ++.....+..+|+++..+ ...+.-+++||.|.++-
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----G---VELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----T---BCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----C---CCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 5677654 4 568999999876 4 555666777899988543 22334688999998873
No 273
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=67.98 E-value=14 Score=34.95 Aligned_cols=70 Identities=14% Similarity=-0.010 Sum_probs=48.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCC-CCcEEEeC---C--eecCCCCcccccccCCCcEEEEE
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPA-SQQMLIHQ---G--KVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~-~~QkLiy~---G--kiL~D~~tLsd~gI~~~s~I~v~ 73 (403)
|.+.|..++|....+.|+...|+.+|=..|....| +.. +-.=|.|. | .-|+.++.|.+......-.+++.
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~---L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLN---LLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHT---CSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEE
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcC---CCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEE
Confidence 56889999999999999999999999999999999 442 22344432 3 23667777777643333344443
No 274
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=67.26 E-value=19 Score=34.81 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=41.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCC-eecCC-CCccccccc
Q 015628 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG-KVLKD-VTTLEENKV 64 (403)
Q Consensus 10 g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~G-kiL~D-~~tLsd~gI 64 (403)
-....+.+.+..|+.+||++|+..++ ++++.|.|+|.+ +..-+ ......|.-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~---i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHC---CCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcC---CChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 34566788999999999999999999 999999999998 45444 344555544
No 275
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=66.07 E-value=13 Score=29.11 Aligned_cols=41 Identities=7% Similarity=0.129 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHcC
Q 015628 174 EATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 214 (403)
Q Consensus 174 e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~G 214 (403)
..-+.+|-+.=|...++.+++.|.-+.-+|++||+.|+++.
T Consensus 35 ~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 35 YSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 33466666654567999999998888999999999999964
No 276
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=65.02 E-value=7.8 Score=28.49 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHh
Q 015628 358 EEREAIERLEAMGFDRALVLEVFFAC 383 (403)
Q Consensus 358 ee~~ai~rL~~lGF~~~~~~~a~~ac 383 (403)
...+++.-|..|||++.++.+|.-.+
T Consensus 16 ~~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 16 AAEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34579999999999999999998776
No 277
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=64.69 E-value=42 Score=26.27 Aligned_cols=72 Identities=19% Similarity=0.137 Sum_probs=45.7
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCcHHHHHHHHHHHhCCC-CC-CCCCcE---EEe-CCeecCCCCcccccccCCCcEEEEE
Q 015628 1 MKVFVKTLKGTHFEIEVK-PEDKVSDVKKNIETVQGSD-VY-PASQQM---LIH-QGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~-~~~TV~dLK~kI~~~~g~~-~i-p~~~Qk---Liy-~GkiL~D~~tLsd~gI~~~s~I~v~ 73 (403)
|||+|+. .+..+.|-+. ...||..|-++--.++-+. .. +..... |-+ .|-+|+.+..|.+. +.++++|+-+
T Consensus 3 MKvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A~ 80 (85)
T 2ns5_A 3 FKVTVCF-GRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVAV 80 (85)
T ss_dssp EEEEEEE-TTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEEE
T ss_pred cEEEEEE-CCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEEE
Confidence 8999995 4666777664 4569999877666554210 01 112222 223 78899888888886 5677777655
Q ss_pred E
Q 015628 74 L 74 (403)
Q Consensus 74 v 74 (403)
.
T Consensus 81 ~ 81 (85)
T 2ns5_A 81 F 81 (85)
T ss_dssp E
T ss_pred e
Confidence 4
No 278
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=57.85 E-value=5.9 Score=27.37 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhCccchHHHHHHHHh
Q 015628 286 QFQALRTMVQANPQILQPMLQELGK 310 (403)
Q Consensus 286 qf~~lR~~vq~NP~lL~~~lq~i~~ 310 (403)
|=+++-.++++||+|+-.+|.|-..
T Consensus 18 qqqqvl~ILksnPqLMAAfIkQR~~ 42 (47)
T 1zoq_C 18 QQQQVLNILKSNPQLMAAFIKQRTA 42 (47)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 3445666777888877777766443
No 279
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=56.06 E-value=8.8 Score=32.38 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=28.6
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEe
Q 015628 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH 48 (403)
Q Consensus 14 ~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy 48 (403)
.+.|-.+.||.+||..|+..+| +|+++|||-+
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg---~~~~~~RlW~ 90 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMG---FPQDQIRLWP 90 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEE
T ss_pred eEEEeccCcHHHHHHHHHHHhC---CCcccEEEEE
Confidence 5677889999999999999999 9999999853
No 280
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=54.15 E-value=24 Score=34.36 Aligned_cols=32 Identities=13% Similarity=0.343 Sum_probs=22.5
Q ss_pred cccCCHHHHHH-HHHHHHcCCChHHHHHHHHHh
Q 015628 352 AVTVTPEEREA-IERLEAMGFDRALVLEVFFAC 383 (403)
Q Consensus 352 ~~~lt~ee~~a-i~rL~~lGF~~~~~~~a~~ac 383 (403)
....+.+.+.. |.-|+.|||+++.+...+..|
T Consensus 105 lL~~s~e~L~~~l~fL~~lGl~~~~i~~ll~~~ 137 (335)
T 4fp9_B 105 LLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCC 137 (335)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCTTTTHHHHHHHC
T ss_pred hccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 44455555444 888999999988877776665
No 281
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=54.03 E-value=13 Score=39.82 Aligned_cols=50 Identities=18% Similarity=0.339 Sum_probs=40.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCe-ecCCCCccccc
Q 015628 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK-VLKDVTTLEEN 62 (403)
Q Consensus 10 g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~Gk-iL~D~~tLsd~ 62 (403)
.+.+.+.+.++.|+.+||..|...+| ++.+.|.|++.+. .+........|
T Consensus 321 ~~~~~~~i~~~~tl~~l~~~i~~~T~---i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 321 GRVHTYPVTENENLQNLKSWLQQDTG---IPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SCCCEEECCTTCCHHHHHHHHHTTSC---CCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred cccceeecCCCccHHHHHHHHHHHhC---CCHHHHHHHhccCCCCCCCcchhhh
Confidence 45567889999999999999999999 9999999998654 44555566655
No 282
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=53.07 E-value=27 Score=29.90 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=36.0
Q ss_pred hHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHHH-----HHHHHcCCCh
Q 015628 301 LQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAI-----ERLEAMGFDR 373 (403)
Q Consensus 301 L~~~lq~i~~~nP~l~~lI~~n~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~~~lt~ee~~ai-----~rL~~lGF~~ 373 (403)
|..++++|. .|++++...++|+++++- ..||+||++|| .+|..+|-.-
T Consensus 37 LNkf~~sL~--~~~~RerF~aDpeA~l~~-----------------------~gLTeEEr~AV~~rD~~~L~~lGgn~ 89 (139)
T 1b4u_A 37 LNQFAMSLM--KAENRERFKADESAYLDE-----------------------WNLTPAAKAAVLARDYNAMIDEGGNV 89 (139)
T ss_dssp HHHHHHHTT--SHHHHHHHHHCHHHHHHT-----------------------TTCCHHHHHHHHHTCHHHHHHTTCCH
T ss_pred HHHHHHHHC--CHHHHHHHHhCHHHHHHH-----------------------cCCCHHHHHHHHcCCHHHHHHcCCCH
Confidence 457777786 499999999999888642 25789999984 5577887543
No 283
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=53.05 E-value=6.8 Score=29.51 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=18.5
Q ss_pred CcHHHHHHHHHHHhCccchHH-HHHHHHhhCHHHHHHHH
Q 015628 283 NSQQFQALRTMVQANPQILQP-MLQELGKQNPHLMRLIQ 320 (403)
Q Consensus 283 ~~pqf~~lR~~vq~NP~lL~~-~lq~i~~~nP~l~~lI~ 320 (403)
..|.|.++=+-|++||+.+.. .+ +||.+.+.|.
T Consensus 30 ~DP~~~~~lq~i~~NP~~i~~~~~-----~dPrv~~~l~ 63 (71)
T 2llv_A 30 KDPQLVAKLIGYKQNPQAIGQDLF-----TDPRLMTIMA 63 (71)
T ss_dssp HSCTHHHHHHHHHHSCTTHHHHTT-----TCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHCHHHHHHHHh-----hCcHHHHHHH
Confidence 445565555556666666653 22 3666665553
No 284
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=53.00 E-value=41 Score=25.40 Aligned_cols=58 Identities=10% Similarity=0.247 Sum_probs=36.5
Q ss_pred EEeCCCCcHHHHHHHHHHHhCC--C--CC----CCCCcEEEeCCeecCCCCcccccccCCCcEEEEE
Q 015628 15 IEVKPEDKVSDVKKNIETVQGS--D--VY----PASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 15 ieV~~~~TV~dLK~kI~~~~g~--~--~i----p~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~ 73 (403)
++++...||.+|.+.+...... . .+ ......+..+|+.+.... -.+.-+++||.|.++
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEe
Confidence 4565568999999999877310 0 00 013456778888775321 124458899998876
No 285
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=52.35 E-value=5.8 Score=28.59 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=31.1
Q ss_pred ccHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHc
Q 015628 171 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 213 (403)
Q Consensus 171 ~~~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~ 213 (403)
.+.++.|++|.+|=- .++|+-++.-|++--.|-|-+|+.||.
T Consensus 10 ~e~~~~~~~L~~MFP-~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 10 NERKDTLNTLQNMFP-DMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHHST-TSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHHcc-cCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 357889999999931 189999999999999999999999873
No 286
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=51.52 E-value=20 Score=32.47 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=32.9
Q ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHhhCChHHHHHHHHc
Q 015628 174 EATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 213 (403)
Q Consensus 174 e~~v~~i~~M-G~~~f~R~qv~~ALrAafnNPdRAvEyL~~ 213 (403)
-.+|.+|-++ | +.=-+|..||..+-+|-|.|+|||..
T Consensus 4 a~~VKeLRe~TG---agmmdCKkAL~e~~GD~ekAie~LR~ 41 (196)
T 1aip_C 4 MELIKKLREATG---AGMMDVKRALEDAGWDEEKAVQLLRE 41 (196)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3578899887 7 77889999999999999999999975
No 287
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=51.29 E-value=33 Score=31.62 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 015628 172 NLEATVQQILDMGGGSWDRETVIRALRA 199 (403)
Q Consensus 172 ~~e~~v~~i~~MG~~~f~R~qv~~ALrA 199 (403)
.....|.-+.++| ++++++.+.+..
T Consensus 40 ~l~~~l~fL~~lG---~~~~~i~~il~~ 64 (270)
T 3m66_A 40 DIKQMLLFLKDVG---IEDNQLGAFLTK 64 (270)
T ss_dssp HTHHHHHHHHHHT---CCGGGHHHHHHH
T ss_pred hHHHHHHHHHHcC---CCHHHHHHHHHh
Confidence 4567889999999 999999887754
No 288
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=51.18 E-value=24 Score=27.02 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=31.4
Q ss_pred HHHHHHHc-CC-ChHHHHHHHHHhCCCHHHHHHHHhccC
Q 015628 362 AIERLEAM-GF-DRALVLEVFFACNKNEELAANYLLDHM 398 (403)
Q Consensus 362 ai~rL~~l-GF-~~~~~~~a~~ac~~ne~~a~~~L~~~~ 398 (403)
-+++|+++ |. |-..--+||-+.++|...|+.+|-+..
T Consensus 27 lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~ 65 (80)
T 1vdl_A 27 FLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKN 65 (80)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhccc
Confidence 48889988 86 667777899999999999999998753
No 289
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=51.09 E-value=16 Score=35.01 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=32.7
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhhCChHHHHHHHHc
Q 015628 175 ATVQQILDM-GGGSWDRETVIRALRAAYNNPERAVEYLYS 213 (403)
Q Consensus 175 ~~v~~i~~M-G~~~f~R~qv~~ALrAafnNPdRAvEyL~~ 213 (403)
.+|.+|-++ | +.=-+|..||..+-+|-|.|+|||..
T Consensus 6 ~~VKeLRe~TG---agmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 6 ELLMKLRRKTG---YSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 578899887 7 88889999999999999999999984
No 290
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=51.07 E-value=54 Score=26.61 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=45.5
Q ss_pred EEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE---eCCee--cCCCC--cccccccCCCcEEEEEEe
Q 015628 5 VKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI---HQGKV--LKDVT--TLEENKVAENSFVVVMLT 75 (403)
Q Consensus 5 VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLi---y~Gki--L~D~~--tLsd~gI~~~s~I~v~v~ 75 (403)
|-..+..-+++.+..+.|+.+|+..+..+.+ +..+.++|+ ++|.. |+++. ....++ -+..|++..+
T Consensus 14 Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~--~NgRLfvc~k 86 (104)
T 1wgy_A 14 VYITEHSYVSVKAKVSSIAQEILKVVAEKIQ---YAEEDLALVAITFSGEKHELQPNDLVISKSLE--ASGRIYVYRK 86 (104)
T ss_dssp EECSSSCEEEECCCTTCBSHHHHHHHHHHHT---SCGGGEEEEEECSSCCCCBCCTTSBSSCCSSC--SSCEEEEEEC
T ss_pred EEeccCceEEEEEeccchHHHHHHHHHHHhc---CCccceEEEEEccCCcEeecCCcceEEEeecc--ccceEEEeeh
Confidence 4444566678888889999999999999998 655578775 67743 44433 334444 4567776654
No 291
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=49.37 E-value=6 Score=29.95 Aligned_cols=48 Identities=29% Similarity=0.495 Sum_probs=35.0
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEE
Q 015628 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 14 ~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~ 73 (403)
.+++....||.+|.+.+ + ++.....+..+|+++..+ .-|++||.|-++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~---~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----G---FNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----T---CSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----C---CCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 35666778999998765 4 556667788999998765 457788877654
No 292
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=47.47 E-value=80 Score=24.59 Aligned_cols=61 Identities=7% Similarity=0.077 Sum_probs=47.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh-CCCCCC--CC-CcEEEeCC--eecCCCCcccccccCCCcEEEEEE
Q 015628 13 FEIEVKPEDKVSDVKKNIETVQ-GSDVYP--AS-QQMLIHQG--KVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 13 ~~ieV~~~~TV~dLK~kI~~~~-g~~~ip--~~-~QkLiy~G--kiL~D~~tLsd~gI~~~s~I~v~v 74 (403)
.-+.|+.++|+.++-++++-.. |.. ++ +. -.+..+.| +.|..+.++.+-||+.-+.|-+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrR-V~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRR-VHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTT-BCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhccee-cCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 4468999999999999998543 322 21 22 34667888 899999999999999999998775
No 293
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=46.53 E-value=11 Score=27.43 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=27.6
Q ss_pred hHHhhCcHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHHcHH
Q 015628 278 LDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQT 324 (403)
Q Consensus 278 l~~Lr~~pqf~~lR~~vq~NP~lL~~~lq~i~~~nP~l~~lI~~n~e 324 (403)
++-|.++|.+. .+-+||+++. .|++|. +||..++-...||.
T Consensus 5 ~~kl~~dPe~~----~~m~dP~~~~-~lq~i~-~NP~~~~~~~~dP~ 45 (62)
T 2lnm_A 5 ISKIMENPDVA----MAFQNPRVQA-ALMECS-ENPMNIMKYQNDKE 45 (62)
T ss_dssp HHHHTTSHHHH----HHTTSHHHHH-HHHHHT-TCGGGHHHHTTCHH
T ss_pred HHHHHcChHHH----HHcCCHHHHH-HHHHHH-HCHHHHHHHHhChH
Confidence 45567788764 4446787664 666655 58887777777775
No 294
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=46.29 E-value=65 Score=25.30 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=41.0
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEe-CCeec-CCCCccccc--ccCCCcEEEEEEec
Q 015628 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-QGKVL-KDVTTLEEN--KVAENSFVVVMLTK 76 (403)
Q Consensus 14 ~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy-~GkiL-~D~~tLsd~--gI~~~s~I~v~v~k 76 (403)
.+-|..+.||.+|...|..+.. +.+++--.+| +...+ ..+.+++++ ..+++.+|+|.-..
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~---l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~Ys~ 86 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLK---LVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCK 86 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTT---CCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEEEES
T ss_pred EEEcCCCCCHHHHHHHHHHHhC---CCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEEEeC
Confidence 3566788999999999999988 6665544444 65554 436666554 22367888877653
No 295
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=45.98 E-value=23 Score=28.67 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=31.4
Q ss_pred HHHHHHHHH-cCCCCCCHHHHHHHHHHhhCChHHHHHHHH
Q 015628 174 EATVQQILD-MGGGSWDRETVIRALRAAYNNPERAVEYLY 212 (403)
Q Consensus 174 e~~v~~i~~-MG~~~f~R~qv~~ALrAafnNPdRAvEyL~ 212 (403)
++.|.-+|+ +| -.|++.++||+.+-+|.=.|+-||.
T Consensus 66 ~edi~lv~~q~~---vs~~~A~~aL~~~~gDiv~Ai~~Lt 102 (102)
T 1tr8_A 66 EDDIELVMNQTG---ASREDATRALQETGGDLAEAIMRLS 102 (102)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHC-
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 466888877 68 9999999999999999999999883
No 296
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=51.40 E-value=4.4 Score=34.06 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=30.7
Q ss_pred HHHHHHHc-CC-ChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015628 362 AIERLEAM-GF-DRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 362 ai~rL~~l-GF-~~~~~~~a~~ac~~ne~~a~~~L~~~ 397 (403)
-|++|+++ |. |-..--+||-+|++|.+.|+.||-++
T Consensus 21 lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 21 LLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 37888888 86 57777789999999999999999765
No 297
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=45.47 E-value=28 Score=27.34 Aligned_cols=33 Identities=18% Similarity=0.087 Sum_probs=25.0
Q ss_pred EEEEeCCCcE-EEEEeC-CCCcHHHHHHHHHHHhC
Q 015628 3 VFVKTLKGTH-FEIEVK-PEDKVSDVKKNIETVQG 35 (403)
Q Consensus 3 I~VKtl~g~~-~~ieV~-~~~TV~dLK~kI~~~~g 35 (403)
|..|....+. ..|.++ ...+|.+||+.|..+.+
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~k 43 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREK 43 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHT
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhC
Confidence 5666665544 457777 56899999999999887
No 298
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=44.32 E-value=50 Score=25.14 Aligned_cols=63 Identities=25% Similarity=0.255 Sum_probs=43.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEEec
Q 015628 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v~k 76 (403)
+|+|.+.+|..+ ++....|+.|+=..|....++. -.--..+|+...-+ +-+++|+.|.++..+
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~~-----~v~AkVNG~~v~L~-----~~L~~gd~VeIit~~ 69 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGNR-----MIGAKVDGRIVPID-----YKVKTGEIIDVLTTK 69 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHHT-----EEEEEETTEEECTT-----CBCCTTCBEEEEECC
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhcc-----eEEEEECCEEcCCC-----cccCCCCEEEEEccC
Confidence 478888899775 4567889999988887766521 12223578766543 457788888877543
No 299
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=43.75 E-value=60 Score=33.48 Aligned_cols=58 Identities=14% Similarity=0.068 Sum_probs=41.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCC---CCCcEE--EeCCee---cCCCCcccccccCCCcEEEE
Q 015628 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYP---ASQQML--IHQGKV---LKDVTTLEENKVAENSFVVV 72 (403)
Q Consensus 12 ~~~ieV~~~~TV~dLK~kI~~~~g~~~ip---~~~QkL--iy~Gki---L~D~~tLsd~gI~~~s~I~v 72 (403)
.+.+-|..+.||.||-+.+..+.+ ++ ...+|| +|++|+ +.++.+|..+.=.....|.+
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~---~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~ri 418 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVE---LGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRI 418 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCC---CCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC---CCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEE
Confidence 466777889999999999998887 54 466777 588875 57777887653222444443
No 300
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.42 E-value=50 Score=26.19 Aligned_cols=50 Identities=10% Similarity=0.126 Sum_probs=35.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCcEEEe--CCeecCCCCcccccccCCCcEEEEEEec
Q 015628 21 DKVSDVKKNIETVQGSDVYPASQQMLIH--QGKVLKDVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 21 ~TV~dLK~kI~~~~g~~~ip~~~QkLiy--~GkiL~D~~tLsd~gI~~~s~I~v~v~k 76 (403)
.++.+|+.|...+++ ++....+|+. .|.+++|+..+..+. .+++.+++.+
T Consensus 28 ~sL~EL~~K~~~~l~---l~~~~~~lvLeeDGT~VddEeyF~tLp---~nT~lmvL~~ 79 (91)
T 2eel_A 28 SSLQELISKTLDALV---IATGLVTLVLEEDGTVVDTEEFFQTLG---DNTHFMILEK 79 (91)
T ss_dssp SSHHHHHHHHHHHTT---CSSSCEEEEETTTCCBCCCHHHHTTSC---SSEEEEEEET
T ss_pred CCHHHHHHHHHHHhc---CCCCCcEEEEeeCCcEEechhhhhhCC---CCCEEEEEcC
Confidence 379999999999998 7655667653 699998876555432 4555555543
No 301
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=43.04 E-value=67 Score=25.07 Aligned_cols=61 Identities=10% Similarity=0.105 Sum_probs=48.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh-CCCCCC--CCCcEEEeCCee--cCCCCcccccccCCCcEEEEEE
Q 015628 13 FEIEVKPEDKVSDVKKNIETVQ-GSDVYP--ASQQMLIHQGKV--LKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 13 ~~ieV~~~~TV~dLK~kI~~~~-g~~~ip--~~~QkLiy~Gki--L~D~~tLsd~gI~~~s~I~v~v 74 (403)
.-+.|+..+|+.++-++++... |.. +. +.-.+..+.|.. |.++.++.+-||+.-+.|-++.
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrr-v~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRR-VAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTT-BCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhccee-eCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 4468999999999999998653 322 21 235677899988 9999999999999999988764
No 302
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=41.24 E-value=40 Score=32.19 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=37.9
Q ss_pred cccCCHHHHHHHHHHHHc----C----CChHHHHHHHHHhCCCHHHHHHHHh
Q 015628 352 AVTVTPEEREAIERLEAM----G----FDRALVLEVFFACNKNEELAANYLL 395 (403)
Q Consensus 352 ~~~lt~ee~~ai~rL~~l----G----F~~~~~~~a~~ac~~ne~~a~~~L~ 395 (403)
.-.||+++.++|++|+++ | .|....++=+.+|++|.+.|...|-
T Consensus 32 ~~~lt~~q~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~ 83 (320)
T 3q8g_A 32 PGNLTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFV 83 (320)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 568999999999988865 4 5677889999999999999999874
No 303
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=41.13 E-value=14 Score=26.60 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q 015628 371 FDRALVLEVFFACNKNEELAANYL 394 (403)
Q Consensus 371 F~~~~~~~a~~ac~~ne~~a~~~L 394 (403)
|.+..+.+++..|++|...||..|
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 467889999999999999998876
No 304
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=40.50 E-value=43 Score=25.17 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=25.8
Q ss_pred HhhCcHHHHHHHHHHHhCccchHHHHHHHHhhCHHHHHHHHH
Q 015628 280 FLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQE 321 (403)
Q Consensus 280 ~Lr~~pqf~~lR~~vq~NP~lL~~~lq~i~~~nP~l~~lI~~ 321 (403)
.+.++|++.++=+-+++||..+..++. ||.++..|+.
T Consensus 24 ~im~DP~~~~~lq~~~~NP~~~~k~~~-----nP~v~~~i~k 60 (71)
T 2llw_A 24 AIMQDPVMQSILQQAQQNPAALQEHMK-----NPEVFKKIQT 60 (71)
T ss_dssp HHHTCTHHHHHHHHHHHCHHHHHHHHH-----SHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHCHHHHHHHHh-----CHHHHHHHHH
Confidence 455677777777777788887766553 7888877753
No 305
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=40.04 E-value=31 Score=27.75 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=23.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhC
Q 015628 10 GTHFEIEVKPEDKVSDVKKNIETVQG 35 (403)
Q Consensus 10 g~~~~ieV~~~~TV~dLK~kI~~~~g 35 (403)
+..+.|-|.++.+..+|..+|..+.+
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~ 47 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKIS 47 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHc
Confidence 45789999999999999999999988
No 306
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=38.82 E-value=35 Score=27.22 Aligned_cols=59 Identities=8% Similarity=-0.046 Sum_probs=41.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeecCCCCcccccccCCCcEEEEEE
Q 015628 11 THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 74 (403)
Q Consensus 11 ~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~v 74 (403)
+.+.+++....||.++-+...-......+.....++-.+|++.. .+.-+++||.|-++-
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 45677888999999998887543221114455678888888887 344578899998774
No 307
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=38.30 E-value=16 Score=28.24 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=19.6
Q ss_pred ChHHHHHHHHHhCCCHHHHHHHH
Q 015628 372 DRALVLEVFFACNKNEELAANYL 394 (403)
Q Consensus 372 ~~~~~~~a~~ac~~ne~~a~~~L 394 (403)
++..+.++|..|++|...||..|
T Consensus 42 Er~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 42 RWEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 35667899999999999999876
No 308
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=37.77 E-value=70 Score=23.26 Aligned_cols=46 Identities=22% Similarity=0.238 Sum_probs=38.5
Q ss_pred ccCCccHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHcC
Q 015628 167 LVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSG 214 (403)
Q Consensus 167 l~~g~~~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~G 214 (403)
+-.-+.++.+|+.+.+|= =.++++++..-|+.. +|.+.-+|=++.|
T Consensus 11 ~~~~sql~~Mve~V~~mF-Pqv~~~~I~~DL~rT-gSVe~TienILeG 56 (58)
T 4g3o_A 11 LYFQGQLNAMAHQIQEMF-PQVPYHLVLQDLQLT-RSVEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHH-CCHHHHHHHHHTT
T ss_pred HhhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh-CCHHHHHHHHHcc
Confidence 344567889999999993 117999999999998 9999999999988
No 309
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=37.23 E-value=1.3e+02 Score=23.52 Aligned_cols=57 Identities=7% Similarity=-0.009 Sum_probs=40.4
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCeec-CCCCccccc--ccCCCcEEEEEEe
Q 015628 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVL-KDVTTLEEN--KVAENSFVVVMLT 75 (403)
Q Consensus 14 ~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~GkiL-~D~~tLsd~--gI~~~s~I~v~v~ 75 (403)
.+-|..+.||..|...|..+.+ + +..-|..+...+ .-+.+++++ ..+++.+|+|.-.
T Consensus 26 KflV~~~~t~~~~v~~lRkrL~---l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Ys 85 (91)
T 3w1s_C 26 VCKISMSQSFAMVILFLKRRLK---M--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSYC 85 (91)
T ss_dssp EEEEETTSBHHHHHHHHHHHHT---C--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHhhC---C--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEEe
Confidence 4567889999999999999988 5 555555577654 446676655 2346778887764
No 310
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=37.21 E-value=81 Score=25.46 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=35.8
Q ss_pred EEEEEe-CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCee
Q 015628 2 KVFVKT-LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKV 52 (403)
Q Consensus 2 kI~VKt-l~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~Gki 52 (403)
.|.||. ..|.++.|.|....+..+|..|+...+| ...-|.|-...
T Consensus 8 dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fG------q~ldL~y~n~E 53 (103)
T 2cu1_A 8 DVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFG------QSMDLHYTNNE 53 (103)
T ss_dssp EEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHS------SCEEEEECSSS
T ss_pred cEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhC------CeeeEEEecce
Confidence 355664 4688899999999999999999999999 35667776543
No 311
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=36.99 E-value=29 Score=28.46 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=22.0
Q ss_pred HHHHHHHHHhCccchHHHHHHHHhhCHHHHHHH
Q 015628 287 FQALRTMVQANPQILQPMLQELGKQNPHLMRLI 319 (403)
Q Consensus 287 f~~lR~~vq~NP~lL~~~lq~i~~~nP~l~~lI 319 (403)
+.+|++++..||+....||. +||||.-.|
T Consensus 58 L~qmK~~~~~nP~~a~~LL~----q~PQLAyAl 86 (109)
T 2l9b_A 58 LQKFQEWTRAHPEDAASLLE----LCPQLSFVT 86 (109)
T ss_dssp HHHHHHHHHHCHHHHHHHHH----HCHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHH----HCchHHHHH
Confidence 34788889999987776665 788887655
No 312
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=35.45 E-value=77 Score=20.94 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHH
Q 015628 173 LEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLY 212 (403)
Q Consensus 173 ~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~ 212 (403)
.+..|.+.+++-| -+++.++.-|.++-.|-++||....
T Consensus 5 ~~~~i~~F~~iTg--~~~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 5 RQDALREFVAVTG--AEEDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp HHHHHHHHHHHTC--CCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHHHhC--cCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5678999999732 6899999999999999999997544
No 313
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=35.04 E-value=39 Score=27.21 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=28.1
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHh-------hCChHHHHHHHHcC
Q 015628 176 TVQQILDMGGGSWDRETVIRALRAA-------YNNPERAVEYLYSG 214 (403)
Q Consensus 176 ~v~~i~~MG~~~f~R~qv~~ALrAa-------fnNPdRAvEyL~~G 214 (403)
.|++.++|| |.|..|.++++.- |...+.-|.=|+.+
T Consensus 30 vV~~alemG---f~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~ 72 (104)
T 2kna_A 30 MVQEAIRMG---FSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNA 72 (104)
T ss_dssp HHHHHHHTT---CCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHH
T ss_pred HHHHHHHcC---ccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 799999999 9999999998763 55556666666554
No 314
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=34.65 E-value=1.4e+02 Score=24.60 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=40.5
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEe-CCeecCCCCccccc--cc-CCCcEEEEEEec
Q 015628 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-QGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (403)
Q Consensus 15 ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy-~GkiL~D~~tLsd~--gI-~~~s~I~v~v~k 76 (403)
+-|..+.||.+|...|..+.. +.+++--++| ++....-+.+++++ .- .++.+|+|....
T Consensus 51 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~ 113 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIM---LPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSG 113 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhC---cCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 347789999999999999988 6665544444 55544556677665 22 356688887653
No 315
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=34.12 E-value=47 Score=23.65 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=32.0
Q ss_pred ccccCCccHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHcCCC
Q 015628 165 SNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIP 216 (403)
Q Consensus 165 s~l~~g~~~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~GIP 216 (403)
|.++.+..+...+.+ |+|+-+..||+..-+|-.+|.+.| ||.
T Consensus 4 ~~~~~~~~l~~~l~~--------~E~~~i~~aL~~~~gn~~~aA~~L--Gis 45 (63)
T 3e7l_A 4 SYLLKIKELKEAKKE--------FEKIFIEEKLREYDYDLKRTAEEI--GID 45 (63)
T ss_dssp CTTTTCSCHHHHHHH--------HHHHHHHHHHHHTTTCHHHHHHHH--TCC
T ss_pred HHhccCCCHHHHHHH--------HHHHHHHHHHHHhCCCHHHHHHHH--CcC
Confidence 344555556665553 789999999999999999999988 554
No 316
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=33.55 E-value=93 Score=22.37 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHH
Q 015628 354 TVTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAANY 393 (403)
Q Consensus 354 ~lt~ee~~ai~rL~~l-GF~~~~~~~a~~ac~~ne~~a~~~ 393 (403)
.|+++...-|..|... |-..+=+...+..|+||-+.|..-
T Consensus 2 ~ls~~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~ 42 (59)
T 1oai_A 2 TLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQA 42 (59)
T ss_dssp CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4788888888888877 888999999999999999999874
No 317
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=33.07 E-value=67 Score=25.87 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=33.3
Q ss_pred CcHHHHHHHHHHHhCCCCCCCC--CcEEE--eCCeecCCCCcccccccCCCcEEEEEEe
Q 015628 21 DKVSDVKKNIETVQGSDVYPAS--QQMLI--HQGKVLKDVTTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 21 ~TV~dLK~kI~~~~g~~~ip~~--~QkLi--y~GkiL~D~~tLsd~gI~~~s~I~v~v~ 75 (403)
.++.+|+.|...+++ ++.. ..+|+ ..|.+++|+.-+..+. + +++.+++.
T Consensus 37 ~SL~EL~~K~~~~l~---l~~~~~~~~lvLeeDGT~VddEeYF~tLp--~-nT~lmvL~ 89 (100)
T 1f2r_I 37 SSLEELRSKACELLA---IDKSLTPITLVLAEDGTIVDDDDYFLCLP--S-NTKFVALA 89 (100)
T ss_dssp SSHHHHHHHHHHHHC---CCGGGCSCEEEESSSCCBCCSSSSSSSSC--S-CCEEEEEC
T ss_pred CCHHHHHHHHHHHhc---cCCCCCceEEEEeeCCcEEechhHhhcCC--C-CCEEEEEc
Confidence 479999999999999 7542 35554 4799998877665543 4 44444443
No 318
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=31.50 E-value=1.5e+02 Score=24.49 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=46.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHH-hCCC----CCCCCCcEEEeCCeecC--CCCcccccccCCCcEEEEE
Q 015628 13 FEIEVKPEDKVSDVKKNIETV-QGSD----VYPASQQMLIHQGKVLK--DVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 13 ~~ieV~~~~TV~dLK~kI~~~-~g~~----~ip~~~QkLiy~GkiL~--D~~tLsd~gI~~~s~I~v~ 73 (403)
+.+-|.+.++.++|-+.+-.- ++.+ .|.-++-.+..+|+... .+++|.+.||..++.|.+.
T Consensus 40 ~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 40 FALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp EEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred eeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 678899999999988776543 2310 14555667889999984 4789999999999998776
No 319
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=31.32 E-value=1.1e+02 Score=25.42 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=41.5
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC------CcEEE---eCCe--ecCCCC--cccccccCCCcEEEEEE
Q 015628 8 LKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS------QQMLI---HQGK--VLKDVT--TLEENKVAENSFVVVML 74 (403)
Q Consensus 8 l~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~------~QkLi---y~Gk--iL~D~~--tLsd~gI~~~s~I~v~v 74 (403)
.+..-+++.+..+.|+.+|+..+..+.+ +..+ .++|+ ++|. +|+++. ....+++ +..|++..
T Consensus 17 ~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~--NgRLfvc~ 91 (120)
T 2dhz_A 17 PDHSYVTIRSRLSASVQDILGSVTEKLQ---YSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGI--NSHLFACT 91 (120)
T ss_dssp TTSCCCCEEECTTCCHHHHHHHHHHHST---TCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCS--SEEEEEEC
T ss_pred ccCceEEEEEeccccHHHHHHHHHHHhc---cccccccccCceEEEEEccCCcEeecCCcceEEEeeccc--cceEEEee
Confidence 3445566788888999999999999998 4333 67775 6774 345433 3344444 56776654
Q ss_pred e
Q 015628 75 T 75 (403)
Q Consensus 75 ~ 75 (403)
+
T Consensus 92 k 92 (120)
T 2dhz_A 92 R 92 (120)
T ss_dssp T
T ss_pred h
Confidence 3
No 320
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=31.31 E-value=74 Score=25.81 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHc----CCChHHHHHHHHHhCCCHHHHHHHHhcc
Q 015628 357 PEEREAIERLEAM----GFDRALVLEVFFACNKNEELAANYLLDH 397 (403)
Q Consensus 357 ~ee~~ai~rL~~l----GF~~~~~~~a~~ac~~ne~~a~~~L~~~ 397 (403)
+|=-++|++|..| .-|--.|.+||+...++-+.|..||+..
T Consensus 8 ~~vg~~~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~~ 52 (111)
T 3k6g_A 8 PEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASG 52 (111)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHS
T ss_pred CcccHHHHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhCC
Confidence 3444556666554 5688999999999999999999999864
No 321
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=30.92 E-value=58 Score=33.44 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=32.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhC
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQG 35 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g 35 (403)
|.+.|..++|....+.|+...|+.+|-..|..+.|
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lg 251 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLA 251 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTT
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcC
Confidence 45788999999999999999999999999999999
No 322
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.37 E-value=73 Score=22.99 Aligned_cols=41 Identities=29% Similarity=0.291 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHcCCCCCCHHHHHHHHHHhhCChHHHHHHHHc
Q 015628 171 SNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYS 213 (403)
Q Consensus 171 ~~~e~~v~~i~~MG~~~f~R~qv~~ALrAafnNPdRAvEyL~~ 213 (403)
+..++.|++.|++-| -+++.++.-|.++-.|-++||...+.
T Consensus 13 ~~~~e~i~qF~~iTg--~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 13 SALKGLIQQFTTITG--ASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHHHHHTC--CCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhC--CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 345678999999732 67999999999999999999985554
No 323
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=29.95 E-value=35 Score=32.01 Aligned_cols=55 Identities=16% Similarity=0.269 Sum_probs=39.9
Q ss_pred hHHhhCcHHHHHHHHHHHhCcc--chHHHHHHHHhhCHHHHHHHHHcHHHHHHHhcC
Q 015628 278 LDFLRNSQQFQALRTMVQANPQ--ILQPMLQELGKQNPHLMRLIQEHQTDFLRLINE 332 (403)
Q Consensus 278 l~~Lr~~pqf~~lR~~vq~NP~--lL~~~lq~i~~~nP~l~~lI~~n~e~Fl~~l~~ 332 (403)
.+||++.-...+|++|++.++. .|.-=+..|..-+|+|+..|..||..++.++.+
T Consensus 19 ~~Fl~~~~Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~ 75 (279)
T 1ltl_A 19 EEFFSLQDYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQ 75 (279)
T ss_dssp HHHTTSHHHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHhhCCCCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHH
Confidence 3577664345788888854443 333335677788999999999999999999753
No 324
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=29.42 E-value=40 Score=29.49 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=22.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHH
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~k 29 (403)
|+|+|+ ++|+.+.++++++.||.++-..
T Consensus 4 ~~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 4 AHIELT-INGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHH
Confidence 356666 7899999999999999987654
No 325
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=29.14 E-value=39 Score=29.40 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=22.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHH
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKK 28 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~ 28 (403)
|+|+|+ ++|+.+.++++++.|+.++-.
T Consensus 4 ~~i~~~-vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 4 ITINLN-LNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEEE-ETTEEEEEEECSSSBHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCCHHHHHH
Confidence 467776 789999999999999998754
No 326
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=28.96 E-value=1.4e+02 Score=25.85 Aligned_cols=56 Identities=11% Similarity=0.194 Sum_probs=37.4
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCC---------CCCcEEEeCCeecCCCCcccccccCCCcEEEEE
Q 015628 14 EIEVKPEDKVSDVKKNIETVQGSDVYP---------ASQQMLIHQGKVLKDVTTLEENKVAENSFVVVM 73 (403)
Q Consensus 14 ~ieV~~~~TV~dLK~kI~~~~g~~~ip---------~~~QkLiy~GkiL~D~~tLsd~gI~~~s~I~v~ 73 (403)
.++++. .||.+|.+.+...+.. +. .....+..+|+.+....- .++-|++||.|.++
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~--l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPA--LKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLF 81 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGG--GHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChh--hhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEE
Confidence 455665 8999999999877320 10 134567788888765322 24468999998887
No 327
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=28.89 E-value=1.9e+02 Score=23.74 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=42.0
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCC-cEEEeCCeecCCCCccccc--cc-CCCcEEEEEEec
Q 015628 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (403)
Q Consensus 15 ieV~~~~TV~dLK~kI~~~~g~~~ip~~~-QkLiy~GkiL~D~~tLsd~--gI-~~~s~I~v~v~k 76 (403)
+-|..+.||.+|...|..+.+ +.+++ .-|+.++....-+.+++++ .- .++.+|+|....
T Consensus 52 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~ 114 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQ---LEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSG 114 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEcCCCCCHHHHHHHHHHHhC---CCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 346788999999999999988 66665 4444577766667777665 22 356688887653
No 328
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=28.33 E-value=2.3e+02 Score=22.75 Aligned_cols=73 Identities=18% Similarity=0.120 Sum_probs=52.7
Q ss_pred EEEEEeCCC---cEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCC---eecCCCCcccccccCCCcEEEEEEe
Q 015628 2 KVFVKTLKG---THFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQG---KVLKDVTTLEENKVAENSFVVVMLT 75 (403)
Q Consensus 2 kI~VKtl~g---~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~G---kiL~D~~tLsd~gI~~~s~I~v~v~ 75 (403)
+|+|..++. ..+++.|..+.-|+-|.-+|-++.... -.-+.--|-+-- ..|+-..+|..|||.-+..+++.-.
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~-~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIA-QDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCS-SCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccc-cchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 578887554 568899999999999999998776511 122333443322 3567788999999999999988754
No 329
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=28.27 E-value=73 Score=20.60 Aligned_cols=26 Identities=27% Similarity=0.593 Sum_probs=19.0
Q ss_pred HHHHHHHhcCCCCCCCCcccccccccCCccccCCHHHHHH-HHHHHH
Q 015628 323 QTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREA-IERLEA 368 (403)
Q Consensus 323 ~e~Fl~~l~~~~~~~~g~~~~~~~~~~~~~~~lt~ee~~a-i~rL~~ 368 (403)
|.+|..+|..+ .||+|++.. |++|++
T Consensus 6 QnaFYevLh~~--------------------nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 6 QRRFYEALHDP--------------------NLNEEQRNAKIKSIRD 32 (34)
T ss_dssp HHHHHHHHHCT--------------------TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--------------------CCCHHHHHhHHHHHhc
Confidence 45788888643 468888877 888865
No 330
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=27.46 E-value=71 Score=29.61 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=36.2
Q ss_pred cccCCHHHHHHHHHHHHc----C----CChHHHHHHHHHhCCCHHHHHHHHh
Q 015628 352 AVTVTPEEREAIERLEAM----G----FDRALVLEVFFACNKNEELAANYLL 395 (403)
Q Consensus 352 ~~~lt~ee~~ai~rL~~l----G----F~~~~~~~a~~ac~~ne~~a~~~L~ 395 (403)
.-.+|+++.++|+.|.++ | .+....++=+.+|+.|.+.|...|-
T Consensus 23 ~~~l~~~q~~~l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~ 74 (296)
T 1aua_A 23 PGNLDSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFE 74 (296)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHH
Confidence 447899999999888763 4 4677888899999999999998874
No 331
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=27.28 E-value=1.5e+02 Score=24.59 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=40.9
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEe-CCeecCCCCccccc--ccC-CCcEEEEEEec
Q 015628 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH-QGKVLKDVTTLEEN--KVA-ENSFVVVMLTK 76 (403)
Q Consensus 15 ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy-~GkiL~D~~tLsd~--gI~-~~s~I~v~v~k 76 (403)
+-|..+.||.+|...|..+.. +.+++--++| ++.+..-+.+++++ .-+ ++.+|+|..+.
T Consensus 57 flVp~~~tv~qf~~~IRkrl~---L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~ 119 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSD 119 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEES
T ss_pred EEcCCCCEeeeehhhhHhhcC---CCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEecC
Confidence 346788999999999999988 6666544444 55544556777665 223 56788887653
No 332
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=27.16 E-value=61 Score=25.58 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=24.4
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHH
Q 015628 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (403)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~k 29 (403)
+|+|...+|+.+.|++....||.+.-.+
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~ 29 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRD 29 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHH
Confidence 7899999999999999999999886543
No 333
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=27.13 E-value=45 Score=28.95 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=23.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHH
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~k 29 (403)
|+|+|+ ++|+.+.++++++.||.++-..
T Consensus 10 m~i~~~-ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISAT-INGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 456666 7899999999999999887654
No 334
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=26.98 E-value=67 Score=23.84 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=26.4
Q ss_pred cCCHHHHHHHHHHHH-cCCChHHHHHHHHHh
Q 015628 354 TVTPEEREAIERLEA-MGFDRALVLEVFFAC 383 (403)
Q Consensus 354 ~lt~ee~~ai~rL~~-lGF~~~~~~~a~~ac 383 (403)
.||+-|++.|..+.+ .||+.+.+..|+.-|
T Consensus 17 ~ls~~e~~~i~~w~~~~~~~~elI~~A~~~a 47 (78)
T 2zc2_A 17 MLSPFELEDLQKTVSDDKTDPDLVRSALREA 47 (78)
T ss_dssp CCCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 578899999988774 699999999999998
No 335
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=26.78 E-value=1.1e+02 Score=32.35 Aligned_cols=46 Identities=9% Similarity=-0.000 Sum_probs=37.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEe
Q 015628 1 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIH 48 (403)
Q Consensus 1 MkI~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy 48 (403)
|.+.|..++|....+.|+...|+.+|-..|..+.|. ...+..-|.|
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL--~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISL--KDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTC--SSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCC--cccccceeEE
Confidence 467899999999999999999999999999999993 2234445544
No 336
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=26.58 E-value=1.3e+02 Score=23.85 Aligned_cols=57 Identities=11% Similarity=0.041 Sum_probs=38.5
Q ss_pred EEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeCCe-ec-CCCCccccc--ccCCCcEEEEEEec
Q 015628 14 EIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGK-VL-KDVTTLEEN--KVAENSFVVVMLTK 76 (403)
Q Consensus 14 ~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~Gk-iL-~D~~tLsd~--gI~~~s~I~v~v~k 76 (403)
.+-|..+.||.+|...|..+.+ +. ..-| |-+. .+ .-+.+++++ ..+++.+|+|.-+.
T Consensus 31 KflV~~~~t~~~~~~~lRkrL~---l~--alFl-yvn~~~~Ps~d~~m~~LY~~~kdDGfLyi~Ys~ 91 (96)
T 1wz3_A 31 KFKVSGSDKFANVIDFLRRQLH---SD--SLFV-YVNSAFSPNPDESVIDLYNNFGFDGKLVVNYAC 91 (96)
T ss_dssp EEEEETTSBTHHHHHHHHHHHT---CS--SCEE-EEEEEECCCTTSBHHHHHHHHCBTTBEEEEEES
T ss_pred EEEeCCCCcHHHHHHHHHHhcC---Cc--eEEE-EECCcccCChhhHHHHHHHHhCCCCEEEEEEeC
Confidence 3556778899999999999988 54 4444 4444 44 446677665 23446788877653
No 337
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=26.54 E-value=38 Score=30.83 Aligned_cols=26 Identities=12% Similarity=0.265 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Q 015628 173 LEATVQQILDMGGGSWDRETVIRALRAAY 201 (403)
Q Consensus 173 ~e~~v~~i~~MG~~~f~R~qv~~ALrAaf 201 (403)
.++++.-|+.+| |.+.++.+|++...
T Consensus 164 ~~ea~~AL~~LG---y~~~ea~~av~~~~ 189 (212)
T 2ztd_A 164 RSPVVEALVGLG---FAAKQAEEATDTVL 189 (212)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 467999999999 99999999999874
No 338
>1pgy_A SWA2P; UBA, ubiquitin, auxilin, ubiquitin-associated domain, protein binding; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=26.49 E-value=1.3e+02 Score=20.74 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=24.0
Q ss_pred HHHHHH-HHHHHHcCCChHHHHHHHHHhCCCHH
Q 015628 357 PEEREA-IERLEAMGFDRALVLEVFFACNKNEE 388 (403)
Q Consensus 357 ~ee~~a-i~rL~~lGF~~~~~~~a~~ac~~ne~ 388 (403)
.|.++. |.||+.||.+-+.+..-|..--.=|.
T Consensus 4 DEvkDmEiAkLMSLGl~id~A~~~Ye~gi~ye~ 36 (47)
T 1pgy_A 4 DEVKDMEIARLMSLGLSIEEATEFYENDVTYER 36 (47)
T ss_dssp HHHHHHHHHHHHHHCCCSHHHHHHHHHHCSSHH
T ss_pred hHHHHHHHHHHHHccCChhhHHHHHHcCchHHH
Confidence 344444 99999999999999988876555443
No 339
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=26.47 E-value=2e+02 Score=23.43 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=39.8
Q ss_pred EeCCCCcHHHHHHHHHHHhCCCCCCCCC-cEEEeCCeecCCCCccccc--cc-CCCcEEEEEEec
Q 015628 16 EVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVMLTK 76 (403)
Q Consensus 16 eV~~~~TV~dLK~kI~~~~g~~~ip~~~-QkLiy~GkiL~D~~tLsd~--gI-~~~s~I~v~v~k 76 (403)
-|..+.||.+|...|..+.+ +.+++ .-|+.++....-+.+++++ .. .++.+|+|....
T Consensus 50 lVp~~~tv~~f~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 111 (117)
T 1eo6_A 50 LVPSDITVAQFMWIIRKRIQ---LPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSG 111 (117)
T ss_dssp EEETTSBHHHHHHHHHHHHT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EcCCCCCHHHHHHhhHHhhc---CCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 45668899999999999988 55555 3444455544556677665 22 347789888754
No 340
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=26.22 E-value=64 Score=28.33 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=36.0
Q ss_pred ccHHHHHHHH-HHcCCCCCCH---HHHHHHHHHhhCC-hHHHHHHHHcC--CCCC
Q 015628 171 SNLEATVQQI-LDMGGGSWDR---ETVIRALRAAYNN-PERAVEYLYSG--IPEQ 218 (403)
Q Consensus 171 ~~~e~~v~~i-~~MG~~~f~R---~qv~~ALrAafnN-PdRAvEyL~~G--IP~~ 218 (403)
+..+..|+.| .+-| |.+ ++|.-||+..-.+ |..-++||..| ||.+
T Consensus 61 s~~~~Lv~~l~~e~G---i~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N 112 (168)
T 3cz6_A 61 SQAEKLVQDLCDETG---IRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPN 112 (168)
T ss_dssp TCHHHHHHHHHHHHC---BCHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTT
T ss_pred hhHHHHHHHHHHHhC---cccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCC
Confidence 4467788888 6788 865 5777799999999 99888999997 7765
No 341
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=26.12 E-value=1.2e+02 Score=24.90 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=30.3
Q ss_pred cCCHHHHHHHHHHHH-cCCChHHHHHHHHHhC-CCHHHHHH
Q 015628 354 TVTPEEREAIERLEA-MGFDRALVLEVFFACN-KNEELAAN 392 (403)
Q Consensus 354 ~lt~ee~~ai~rL~~-lGF~~~~~~~a~~ac~-~ne~~a~~ 392 (403)
.++++|++.+.++.. +|+++.+..+.+..|+ .....+..
T Consensus 34 ~v~~~E~~~l~~~l~~lgl~~~e~~~l~~~~~~~~~~~~~~ 74 (133)
T 2h5n_A 34 KIKPAEIAVMTREFMRFGILQDQVDLLLKASDSIEASQAVA 74 (133)
T ss_dssp CCCHHHHHHHHHHHGGGTCCHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhccHHHHHH
Confidence 578999999999876 8999988888887775 35555555
No 342
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=25.76 E-value=51 Score=28.71 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=22.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCcHHHHHHH
Q 015628 2 KVFVKTLKGTHFEIEVKPEDKVSDVKKN 29 (403)
Q Consensus 2 kI~VKtl~g~~~~ieV~~~~TV~dLK~k 29 (403)
+|+|+ ++|+.+.++++++.||.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 5 IITVN-VNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 56665 7899999999999999987654
No 343
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=25.64 E-value=21 Score=27.66 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.6
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q 015628 371 FDRALVLEVFFACNKNEELAANYL 394 (403)
Q Consensus 371 F~~~~~~~a~~ac~~ne~~a~~~L 394 (403)
|++..+.++|..|++|...|+..|
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L 74 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL 74 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 457788899999999999998876
No 344
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=25.50 E-value=1.6e+02 Score=24.59 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=41.2
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE-eCCeec-CCCCccccc--cc-CCCcEEEEEEe
Q 015628 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI-HQGKVL-KDVTTLEEN--KV-AENSFVVVMLT 75 (403)
Q Consensus 15 ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLi-y~GkiL-~D~~tLsd~--gI-~~~s~I~v~v~ 75 (403)
+-|..+.||.+|...|..+.+ +.+++--++ |.++.+ .-+.+++++ .- .++.+|+|...
T Consensus 57 flVp~~~tv~qf~~~iRkrL~---l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQ---LNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 119 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHhC---CCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEe
Confidence 346788999999999999998 766665555 766555 446677665 22 35678888764
No 345
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=25.42 E-value=1.8e+02 Score=23.30 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=38.4
Q ss_pred EEeCCCCcHHHHHHHHHHHhCCCCCCCCC-cEEEeCCeecCCCCccccc--cc-CCCcEEEEEE
Q 015628 15 IEVKPEDKVSDVKKNIETVQGSDVYPASQ-QMLIHQGKVLKDVTTLEEN--KV-AENSFVVVML 74 (403)
Q Consensus 15 ieV~~~~TV~dLK~kI~~~~g~~~ip~~~-QkLiy~GkiL~D~~tLsd~--gI-~~~s~I~v~v 74 (403)
+-|..+.||.+|...|..+.+ +.+++ .-|+.++....-+.+|+++ .. .++.+|+|..
T Consensus 48 flVp~~~tv~~~~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Y 108 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAY 108 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHhc---CCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEEEEE
Confidence 345668899999999999988 65554 4454455544556677765 22 3467888765
No 346
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=24.98 E-value=96 Score=33.26 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=39.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCC--------CcEEEeCCe--e----cCC--CCcccccccCCCcEEEEE
Q 015628 13 FEIEVKPEDKVSDVKKNIETVQGSDVYPAS--------QQMLIHQGK--V----LKD--VTTLEENKVAENSFVVVM 73 (403)
Q Consensus 13 ~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~--------~QkLiy~Gk--i----L~D--~~tLsd~gI~~~s~I~v~ 73 (403)
..+.++.+.|+.+|-+.|..+.... +... ..+++|... . .++ +++|+++||++|+.|.|.
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 714 QNIQFSPSAKLQEVLDYLTNSASLQ-MKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp EEEEECTTSBHHHHHHHHHHCTTTC-CSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred EEEEECCcChHHHHHHHHHhhhccC-cccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 4577887889999988888853300 2111 235666532 1 112 678999999999998875
No 347
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=24.68 E-value=72 Score=27.94 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=19.0
Q ss_pred ccccCCHHHHHHHHHHHHcCC
Q 015628 351 QAVTVTPEEREAIERLEAMGF 371 (403)
Q Consensus 351 ~~~~lt~ee~~ai~rL~~lGF 371 (403)
..+.+++||.+++++|.++|.
T Consensus 123 ~~V~v~~ed~~~lk~L~~~Gv 143 (168)
T 3eye_A 123 SKVYVDDQDLTDLRFIKQRGV 143 (168)
T ss_dssp TTEEECHHHHHHHHHHHHTTC
T ss_pred ccEeeCHHHHHHHHHHHHCCC
Confidence 368899999999999999995
No 348
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=24.63 E-value=62 Score=29.10 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHh
Q 015628 359 EREAIERLEAMGFDRALVLEVFFAC 383 (403)
Q Consensus 359 e~~ai~rL~~lGF~~~~~~~a~~ac 383 (403)
..++++-|+.|||++.++-+|.-.+
T Consensus 160 ~~ea~~AL~~LGy~~~ea~~av~~~ 184 (203)
T 1cuk_A 160 EQEAVARLVALGYKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3579999999999999999999887
No 349
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=24.03 E-value=2.3e+02 Score=24.22 Aligned_cols=64 Identities=13% Similarity=0.209 Sum_probs=43.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCc----EEEe-----------------CCeec-CCCCcccccccCCCcE
Q 015628 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQ----MLIH-----------------QGKVL-KDVTTLEENKVAENSF 69 (403)
Q Consensus 12 ~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~Q----kLiy-----------------~GkiL-~D~~tLsd~gI~~~s~ 69 (403)
.+.|-...+.|+.+|-..|.+.... .+...- ++|| .|+.- +|++||.+++..-|++
T Consensus 55 ElQIYTW~daTLrEL~~Lvk~~~p~--ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDy 132 (143)
T 4a6q_A 55 ELQIYTWMDATLKELTSLVKEVYPE--ARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDY 132 (143)
T ss_dssp CEEEEECTTCBHHHHHHHHHHHCGG--GGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCE
T ss_pred eeEEeeCCCCCHHHHHHHHHHhCcc--ccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCE
Confidence 3667777999999999999877531 111112 2232 33332 4689999999999999
Q ss_pred EEEEEecC
Q 015628 70 VVVMLTKS 77 (403)
Q Consensus 70 I~v~v~k~ 77 (403)
|.|-+..+
T Consensus 133 idvaI~pP 140 (143)
T 4a6q_A 133 LDIAITPP 140 (143)
T ss_dssp EEEEEECG
T ss_pred EEEEEeCC
Confidence 99988543
No 350
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=24.03 E-value=1.3e+02 Score=23.63 Aligned_cols=41 Identities=15% Similarity=0.252 Sum_probs=34.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcE-EEeCCeec
Q 015628 10 GTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQM-LIHQGKVL 53 (403)
Q Consensus 10 g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~Qk-Liy~GkiL 53 (403)
...+.+.|+...|=.++|+.|+..++ +.+.... +++.||.=
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~---VkV~~VnT~~~~gK~k 68 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFE---VEVEVVNTLVVKGKVK 68 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSC---CCCCEEEEEEECCCBC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcC---CceEEEEEEEeCCcee
Confidence 36799999999999999999999999 7777774 46777743
No 351
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=23.60 E-value=64 Score=24.62 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=28.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCCCC-----CCCcEEEeCC
Q 015628 12 HFEIEVKPEDKVSDVKKNIETVQGSDVYP-----ASQQMLIHQG 50 (403)
Q Consensus 12 ~~~ieV~~~~TV~dLK~kI~~~~g~~~ip-----~~~QkLiy~G 50 (403)
.+.|-|.++.+..+|..+|..+.+ .. ....||-|+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~---~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKIS---NTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTT---TTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHc---ccccccccceeEEEEEc
Confidence 578899999999999999999988 43 2445666644
No 352
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=23.42 E-value=98 Score=25.21 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=42.3
Q ss_pred EEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCC-----CcEEEe-----CCee--cCC-CCcccccccCCCcEE
Q 015628 4 FVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPAS-----QQMLIH-----QGKV--LKD-VTTLEENKVAENSFV 70 (403)
Q Consensus 4 ~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~-----~QkLiy-----~Gki--L~D-~~tLsd~gI~~~s~I 70 (403)
.+=..+|-.+.++|..+.|+.++|+.+.++-.+ +|.. .+..+| .|.+ |.| ++.|.++..- -..+
T Consensus 23 ~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~--~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf-~piL 99 (108)
T 2v1y_A 23 ECLLPNGMIVTLECLREATLITIKHELFKEARK--YPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QPFL 99 (108)
T ss_dssp EEECTTSCEEEEEEETTCBHHHHHHHHHHHGGG--STTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-SSEE
T ss_pred EEEcCcEEEEEEEeeccccHHHHHHHHHHHHHh--CchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-ceEE
Confidence 333457888999999999999999999988442 3221 111122 2333 655 4788887765 3344
Q ss_pred EEE
Q 015628 71 VVM 73 (403)
Q Consensus 71 ~v~ 73 (403)
.|+
T Consensus 100 klv 102 (108)
T 2v1y_A 100 KVI 102 (108)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 353
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=22.90 E-value=31 Score=24.94 Aligned_cols=15 Identities=20% Similarity=0.736 Sum_probs=6.9
Q ss_pred HHHHhCccchHHHHH
Q 015628 292 TMVQANPQILQPMLQ 306 (403)
Q Consensus 292 ~~vq~NP~lL~~~lq 306 (403)
.++.+||+|+-.+|.
T Consensus 31 ~ILksNPqLMAAfIK 45 (59)
T 1kbh_B 31 NILKSNPQLMAAFIK 45 (59)
T ss_dssp HHHTTSHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHH
Confidence 344444444444444
No 354
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=22.66 E-value=91 Score=27.09 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=19.0
Q ss_pred ccccCCHHHHHHHHHHHHcCC
Q 015628 351 QAVTVTPEEREAIERLEAMGF 371 (403)
Q Consensus 351 ~~~~lt~ee~~ai~rL~~lGF 371 (403)
..+.+++||.++++.|.++|.
T Consensus 121 ~~v~v~~ed~~~lk~L~~~Gv 141 (165)
T 1vsq_C 121 NAVSVDEKDIEAFKKLNARGI 141 (165)
T ss_dssp SSCEECHHHHHHHHHHHHTTC
T ss_pred ccEeeCHHHHHHHHHHHHCCC
Confidence 468899999999999999994
No 355
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=22.24 E-value=1.5e+02 Score=23.79 Aligned_cols=54 Identities=2% Similarity=0.017 Sum_probs=31.8
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCcEEEeCC---ee--cC-CCCcccccccCCCcEEEEEEec
Q 015628 21 DKVSDVKKNIETVQGSDVYPASQQMLIHQG---KV--LK-DVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 21 ~TV~dLK~kI~~~~g~~~ip~~~QkLiy~G---ki--L~-D~~tLsd~gI~~~s~I~v~v~k 76 (403)
.|...|+.+|...+.. +......|.|.. -. +. |+.....+.......+.|.|+.
T Consensus 42 ~s~~~L~~~V~~lFp~--l~~~~f~l~Y~DedGDlItiSsDeEL~~Al~~~~~~~lRlyVke 101 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPA--LRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVKDDIFRIYIKE 101 (102)
T ss_dssp CHHHHHHHHHHHHCTT--SCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCCSSEEEEEEEE
T ss_pred ccHHHHHHHHHHHccc--cCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcCCCeEEEEEEc
Confidence 4899999999999652 444567777754 22 22 2222222333345677777653
No 356
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=21.84 E-value=68 Score=33.07 Aligned_cols=70 Identities=11% Similarity=0.242 Sum_probs=52.0
Q ss_pred EEEEeCC--CcEEE----EEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEEeC----C--eecC-CCCccccc--ccCCC
Q 015628 3 VFVKTLK--GTHFE----IEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQ----G--KVLK-DVTTLEEN--KVAEN 67 (403)
Q Consensus 3 I~VKtl~--g~~~~----ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLiy~----G--kiL~-D~~tLsd~--gI~~~ 67 (403)
|++|-.+ .+++. +-|+.+.+|.+|-..|.+..| +|++.--.+|. + ..|+ .+.++.+. .|.+|
T Consensus 133 lFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g---~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~G 209 (530)
T 2ylm_A 133 LFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAG---FIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDG 209 (530)
T ss_dssp EEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHT---CCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTT
T ss_pred EEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcC---CCCCCceEEEEecCCCceeEcccccccHHHHHhcccCC
Confidence 5666433 33332 578889999999999999999 88876655553 2 3467 47799999 99999
Q ss_pred cEEEEEEe
Q 015628 68 SFVVVMLT 75 (403)
Q Consensus 68 s~I~v~v~ 75 (403)
+.|++=..
T Consensus 210 dII~fQ~~ 217 (530)
T 2ylm_A 210 DIIVFQKD 217 (530)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEec
Confidence 99877653
No 357
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=21.69 E-value=46 Score=29.97 Aligned_cols=25 Identities=12% Similarity=0.347 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 015628 173 LEATVQQILDMGGGSWDRETVIRALRAA 200 (403)
Q Consensus 173 ~e~~v~~i~~MG~~~f~R~qv~~ALrAa 200 (403)
.++++.-|+.+| |.+.++.+|++..
T Consensus 160 ~~ea~~AL~~LG---y~~~ea~~av~~~ 184 (203)
T 1cuk_A 160 EQEAVARLVALG---YKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHT---CCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHh
Confidence 468999999999 9999999999986
No 358
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=21.64 E-value=91 Score=24.31 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=32.2
Q ss_pred cccCCHHHHHHHHHHHHcC-C-ChHHHHHHHHHhCCCHHHH
Q 015628 352 AVTVTPEEREAIERLEAMG-F-DRALVLEVFFACNKNEELA 390 (403)
Q Consensus 352 ~~~lt~ee~~ai~rL~~lG-F-~~~~~~~a~~ac~~ne~~a 390 (403)
.|.|+++-.+-|+.+++-| | ++.+||+..+......+..
T Consensus 7 sIsL~~~l~~~i~~~V~sG~Y~s~SEviR~~lR~l~~re~~ 47 (88)
T 3kxe_C 7 SVVLGDHFQAFIDSQVADGRYGSASEVIRAGLRLLEENEAK 47 (88)
T ss_dssp EECCCHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHH
Confidence 6889999999999999987 6 8999999988777655543
No 359
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=21.63 E-value=1.5e+02 Score=27.57 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=36.2
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHHHHHhCCCCCCCCCcEEE--eC----CeecCCCCcccc
Q 015628 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLI--HQ----GKVLKDVTTLEE 61 (403)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLi--y~----GkiL~D~~tLsd 61 (403)
|+|-.-+|....|.|++++|+.+|-..+..+.++ .....--|+ +. -+.|.|...+-+
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~--~~~~~W~l~E~~~~l~lER~ledhE~V~e 73 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSHS--VDDNSWTLVEHHPHLGLERCLEDHELVVQ 73 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC---------EEEEEEETTTTEEEECCTTSBHHH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCC--CCCCCEEEEEECCCcccccccccchhHHH
Confidence 4555678888999999999999999888877652 222222222 21 367888665543
No 360
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=20.97 E-value=1.5e+02 Score=21.20 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHH
Q 015628 355 VTPEEREAIERLEAM-GFDRALVLEVFFACNKNEELAAN 392 (403)
Q Consensus 355 lt~ee~~ai~rL~~l-GF~~~~~~~a~~ac~~ne~~a~~ 392 (403)
|+++..+-|.+|... |-..+=+...+..|+||-+.|..
T Consensus 2 l~~~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~ 40 (57)
T 2jp7_A 2 LNPVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIK 40 (57)
T ss_dssp CCHHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHH
Confidence 566777777777765 77777777788888888877765
No 361
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=20.87 E-value=1.4e+02 Score=24.64 Aligned_cols=54 Identities=2% Similarity=0.015 Sum_probs=31.9
Q ss_pred CcHHHHHHHHHHHhCCCCCCCCCcEEEeCCe---e--cC-CCCcccccccCCCcEEEEEEec
Q 015628 21 DKVSDVKKNIETVQGSDVYPASQQMLIHQGK---V--LK-DVTTLEENKVAENSFVVVMLTK 76 (403)
Q Consensus 21 ~TV~dLK~kI~~~~g~~~ip~~~QkLiy~Gk---i--L~-D~~tLsd~gI~~~s~I~v~v~k 76 (403)
.+...|+.+|...+.. +......|.|... . +. |+.....+.......+.|.|+.
T Consensus 57 ~s~~~L~~kV~~lFp~--L~~~~f~l~YkDEdGDlItISsDeEL~~Al~~~~~~~lRlyVke 116 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPA--LRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVKDDIFRIYIKE 116 (117)
T ss_dssp CHHHHHHHHHHHHCTT--SCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCCSSEEEEEEEE
T ss_pred CCHHHHHHHHHHHccc--cCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcCCCeEEEEEEe
Confidence 4899999999999842 4455677777542 2 12 2222222333335577777653
No 362
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=20.73 E-value=44 Score=23.78 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=18.5
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q 015628 371 FDRALVLEVFFACNKNEELAANYL 394 (403)
Q Consensus 371 F~~~~~~~a~~ac~~ne~~a~~~L 394 (403)
|++..+.+++..| +|...||..|
T Consensus 21 ~Er~~I~~aL~~~-gn~~~aA~~L 43 (61)
T 1g2h_A 21 YEAQVLKLFYAEY-PSTRKLAQRL 43 (61)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHT
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHh
Confidence 3466778899999 9999998876
No 363
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=20.71 E-value=97 Score=20.97 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=22.1
Q ss_pred cccCCHHHHHHHHHHHHc-CCChHHHHHH
Q 015628 352 AVTVTPEEREAIERLEAM-GFDRALVLEV 379 (403)
Q Consensus 352 ~~~lt~ee~~ai~rL~~l-GF~~~~~~~a 379 (403)
.+.||+||.+.|+..... |.+..+.|..
T Consensus 19 ~vRlt~eE~~~l~~~A~~~g~s~SeyiR~ 47 (51)
T 2ba3_A 19 TLRFSPVEDETIRKKAEDSGLTVSAYIRN 47 (51)
T ss_dssp EEEECHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 578999999999988775 8776666543
No 364
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=20.58 E-value=73 Score=28.97 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHh
Q 015628 360 REAIERLEAMGFDRALVLEVFFAC 383 (403)
Q Consensus 360 ~~ai~rL~~lGF~~~~~~~a~~ac 383 (403)
.++++-|+.|||++.++-+|.-.+
T Consensus 165 ~ea~~AL~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 165 SPVVEALVGLGFAAKQAEEATDTV 188 (212)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 469999999999999999998776
No 365
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=20.51 E-value=62 Score=27.96 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=22.0
Q ss_pred EEEEeCCCcEEEEEeCCCCcHHHHHHHH
Q 015628 3 VFVKTLKGTHFEIEVKPEDKVSDVKKNI 30 (403)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~dLK~kI 30 (403)
|+|+ ++|+.+.+++++..||.++-..+
T Consensus 5 i~~~-vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 5 LRLT-LNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp EEEE-ETTEEEEEEEETTCBHHHHHHHT
T ss_pred EEEE-ECCEEEEEecCCcCcHHHHHHHc
Confidence 4444 79999999999999998887654
No 366
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=20.03 E-value=51 Score=26.13 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHhCCCHHHHHHHH
Q 015628 372 DRALVLEVFFACNKNEELAANYL 394 (403)
Q Consensus 372 ~~~~~~~a~~ac~~ne~~a~~~L 394 (403)
.+....++|..|++|...||..|
T Consensus 59 Er~~I~~aL~~~~gn~~~AA~~L 81 (98)
T 1eto_A 59 EQPLLDMVMQYTLGNQTRAALMM 81 (98)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 46777899999999999999876
Done!