Citrus Sinensis ID: 015631

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
Protein Sequence
MDDGQGSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMGTSQIVAGADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCIQLNVDARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWEQFLTENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAERT
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHcccccccEEEEccccccEEEEccHHHHHHHHHcccccccHHHHHHHHHHHcccccccccEEEEccccccccHHHHHHHccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHccHHHccccEEccccccEEEccHHHHHHHcHHHHcccccHHHHHHHHHHccEEEccccccEEcccHHHccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccccccccccHHccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccHHccccccccccccccccccccccccccHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mddgqgssnslppflaktyemvddsstdltvswsssnksfivwnppdfardllpkyfkhnnfSSFIRQLntygfrkvdpeqwefanedfvrgqperlknihrrkpvhshsnqnlhgqgtplteserQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRalqkpglesnfgahlenhdrkrrlpridyfydeaniednpmgtsqivagadsadisssnmEKFEQLESSMTFWENIVQDvgqscfqpnssleldestscadspaisciqlnvdarpkspgidmnsepavtaatepvpskepetattiplqagvndvfweqfltenpgssdaqEVQSERkecdgkknenkpadhgkfwwNMRNVNSLAeqmghltpaert
Flexible Loop (DISEMBL)
mddgqgssnslpPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHrrkpvhshsnqnlhgqgtplteserQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALqkpglesnfgahlenhdrkrrlPRIDYFYDEANIEDNPMGTSQIVAGADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCIQLNVDARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWEQFLTenpgssdaqeVQSERkecdgkknenkpadhgkfwWNMRNVNSLAeqmghltpaert
Low Complexity Region (SEG)
MDDGQGSSNSLPPFLAKTYEMvddsstdltvswsssNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESERQGlkddierlkkekeilllelqrheqerqGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMGTSQIVAGADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCIQLNVDARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWEQFLTENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAERT
Disordered region (IsUnstruct)
****************************LTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFV*********************************************************************************************************************LPRIDYFYDEAN**********************************MTFWENIVQDVGQSCF*******************ISCIQL************************************IPLQAGVNDVFWEQFL********************************KFWWNMRNV****************
Disordered Region (DISOPRED)
**************LAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERL*************************************************LQRHEQERQGFESQMQLLRE******QRQQKMVSFVGRAL*******************************************************************************************************************************************************************************************************NVNSLA************
Disordered Region (DISEMBL)
*********SLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMGTSQIVAGADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPN************DSPAISCIQLNVDARPKSPGIDMNS*******************TTIPLQAGVNDVFWEQFLTEN***********************KPADHGKFWWNMRNVNSLAEQMG********
Disordered Region (DISPRO)
*********SLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRR***********************QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLEN**************************************************************************************************************************************GVNDVFWEQFLTEN*****************************KFWWNMR***SLAEQ**H*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDGQGSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMGTSQIVAGADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCIQLNVDARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWEQFLTENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAERT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	403	2.2.26 [Sep-21-2011]
O49403	401	Heat stress transcription	yes	no	0.950	0.955	0.570	1e-109
Q9FK72	345	Heat stress transcription	no	no	0.851	0.994	0.529	7e-98
Q94J16	440	Heat stress transcription	yes	no	0.947	0.868	0.430	4e-92
Q93VB5	459	Heat stress transcription	no	no	0.933	0.819	0.397	2e-66
Q84T61	506	Heat stress transcription	no	no	0.955	0.760	0.356	1e-63
Q94BZ5	466	Heat stress transcription	no	no	0.841	0.727	0.361	2e-58
Q9LQM7	485	Heat stress transcription	no	no	0.468	0.389	0.548	5e-58
Q9SCW5	468	Heat stress transcription	no	no	0.506	0.435	0.509	2e-57
O81821	481	Heat stress transcription	no	no	0.950	0.796	0.347	2e-57
Q40152	527	Heat shock factor protein	N/A	no	0.476	0.364	0.519	6e-57

>sp|O49403|HFA4A_ARATH Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=1

 Score =  396 bits (1018), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 232/407 (57%), Positives = 286/407 (70%), Gaps = 24/407 (5%)

Query: 7   SSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFI 66
           SS+SLPPFL KTYEMVDDSS+D  VSWS SNKSFIVWNPP+F+RDLLP++FKHNNFSSFI
Sbjct: 9   SSSSLPPFLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNNFSSFI 68

Query: 67  RQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESER 126
           RQLNTYGFRK DPEQWEFAN+DFVRGQP  +KNIHRRKPVHSHS  NL  Q  PLT+SER
Sbjct: 69  RQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLPNLQAQLNPLTDSER 128

Query: 127 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 186
             + + IERL KEKE LL EL + ++ER+ FE Q++ L+ER Q ME+RQ+ MVSFV + L
Sbjct: 129 VRMNNQIERLTKEKEGLLEELHKQDEEREVFEMQVKELKERLQHMEKRQKTMVSFVSQVL 188

Query: 187 QKPGLESNFGAHL-ENHDRKRRLPRIDYFYDEANIEDNPMGTSQIVAGADSADISSSNME 245
           +KPGL  N    + E ++RKRR PRI++F DE  +E+N   T  +V    S   SS   E
Sbjct: 189 EKPGLALNLSPCVPETNERKRRFPRIEFFPDEPMLEEN--KTCVVVREEGSTSPSSHTRE 246

Query: 246 -KFEQLESSMTFWENIVQDVGQSCFQPNS--SLELDESTSCADSPAISCIQLNVDARPKS 302
            + EQLESS+  WEN+V D  +S  Q  S  +L++DES++  +SP +SCIQL+VD+R KS
Sbjct: 247 HQVEQLESSIAIWENLVSDSCESMLQSRSMMTLDVDESSTFPESPPLSCIQLSVDSRLKS 306

Query: 303 PG----IDMNSEPAVTAATEPVPSKEPET--ATTIPLQAGVNDVFWEQFLTENPGSSDAQ 356
           P     IDMN EP          SKE  T  A   P  AG ND FW+QF +ENPGS++ +
Sbjct: 307 PPSPRIIDMNCEPD--------GSKEQNTVAAPPPPPVAGANDGFWQQFFSENPGSTEQR 358

Query: 357 EVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAERT 403
           EVQ ERK+   K          K WWN RNVN++ EQ+GHLT +ER+
Sbjct: 359 EVQLERKDDKDKAG----VRTEKCWWNSRNVNAITEQLGHLTSSERS 401

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FK72|HFA4C_ARATH Heat stress transcription factor A-4c OS=Arabidopsis thaliana GN=HSFA4C PE=2 SV=1

 Score =  357 bits (917), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 208/393 (52%), Positives = 261/393 (66%), Gaps = 50/393 (12%)

Query: 1   MDDGQGSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHN 60
           MD+  G S+SLPPFL KTYEMVDDSS+D  V+WS +NKSFIV NP +F+RDLLP++FKH 
Sbjct: 1   MDENNGGSSSLPPFLTKTYEMVDDSSSDSVVAWSENNKSFIVKNPAEFSRDLLPRFFKHK 60

Query: 61  NFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTP 120
           NFSSFIRQLNTYGFRKVDPE+WEF N+DFVRG+P  +KNIHRRKPVHSHS  NL  Q  P
Sbjct: 61  NFSSFIRQLNTYGFRKVDPEKWEFLNDDFVRGRPYLMKNIHRRKPVHSHSLVNLQAQN-P 119

Query: 121 LTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVS 180
           LTESER+ ++D IERLK EKE LL ELQ  EQER+ FE Q+  L++R Q MEQ Q+ +V+
Sbjct: 120 LTESERRSMEDQIERLKNEKEGLLAELQNQEQERKEFELQVTTLKDRLQHMEQHQKSIVA 179

Query: 181 FVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMGTSQIVAGADSADIS 240
           +V + L KPGL  N    LENH+R++R             ++N            S   S
Sbjct: 180 YVSQVLGKPGLSLN----LENHERRKR-----------RFQEN------------SLPPS 212

Query: 241 SSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCIQLNVDARP 300
           SS++E+ E+LESS+TFWEN+V +  +     +SS++ D + S   S +I       D RP
Sbjct: 213 SSHIEQVEKLESSLTFWENLVSESCEKSGLQSSSMDHDAAES---SLSIG------DTRP 263

Query: 301 KSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWEQFLTENPGSSDAQEVQS 360
           KS  IDMNSEP VT  T P P            + GVND FWEQ LTENPGS++ QEVQS
Sbjct: 264 KSSKIDMNSEPPVT-VTAPAP------------KTGVNDDFWEQCLTENPGSTEQQEVQS 310

Query: 361 ERKECDGKKNENKPADHGKFWWNMRNVNSLAEQ 393
           ER++     N NK  +   +WWN  NVN++ E+
Sbjct: 311 ERRDVGNDNNGNKIGNQRTYWWNSGNVNNITEK 343

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94J16|HFA4B_ORYSJ Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1

 Score =  338 bits (868), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 191/444 (43%), Positives = 261/444 (58%), Gaps = 62/444 (13%)

Query: 10  SLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQL 69
           SLPPFL+KTYEMVDD STD  V W+ +  SF+V N P+F RDLLPKYFKHNNFSSF+RQL
Sbjct: 9   SLPPFLSKTYEMVDDPSTDAVVGWTPAGTSFVVANQPEFCRDLLPKYFKHNNFSSFVRQL 68

Query: 70  NTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGT-PLTESERQG 128
           NTYGFRKVDPEQWEFANEDF++GQ  RLKNIHRRKP+ SHS+   H QG  PLT++ER+ 
Sbjct: 69  NTYGFRKVDPEQWEFANEDFIKGQRHRLKNIHRRKPIFSHSS---HSQGAGPLTDNERKD 125

Query: 129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQK 188
            +++IERLK +   L  ELQ +  ++   E +MQ L E+  ++E +Q+ ++S+V   ++ 
Sbjct: 126 YEEEIERLKSDNAALSSELQNNTLKKLNMEKRMQALEEKLFVVEDQQRSLISYVREIVKA 185

Query: 189 PGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMGTSQIVAGADSADISSSNMEKFE 248
           PG  S+F    ++H +KRRLP    F+++AN ++N +    +     ++   +   E F+
Sbjct: 186 PGFLSSFVQQQDHHRKKRRLPIPISFHEDANTQENQIMPCDLT----NSPAQTFYRESFD 241

Query: 249 QLESSMTFWENIVQDVGQ------------------------------------------ 266
           ++ESS+   EN +++  +                                          
Sbjct: 242 KMESSLNSLENFLREASEEFGNDISYDDGVPGPSSTVVLTELHSPGESDPRVSSPPTRMR 301

Query: 267 ----SCFQPNSSLELDESTSCADSPAISCIQLNVDARPKSPGIDMNSEPAV--TAATEPV 320
                    +SS ++ ESTSCA+SP I  +   VD R K   ID+NSEPAV  T  +   
Sbjct: 302 TSSAGAGDSHSSRDVAESTSCAESPPIPQMHSRVDTRAKVSEIDVNSEPAVTETGPSRDQ 361

Query: 321 PSKEPETATTIPLQAGVNDVFWEQFLTENPGSSDA-QEVQSERKECDGKKNENKPADHGK 379
           P++EP   T      G ND FW+QFLTE PGSSDA QE QSER++   K +E K  D   
Sbjct: 362 PAEEPPAVT-----PGANDGFWQQFLTEQPGSSDAHQEAQSERRDGGNKVDEMKSGDRQH 416

Query: 380 FWWNMRNVNSLAEQMGHLTPAERT 403
            WW  RNV  + E++G LT  E+T
Sbjct: 417 LWWGKRNVEQITEKLGLLTSTEKT 440

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93VB5|HFA4D_ORYSJ Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1

 Score =  253 bits (646), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 179/450 (39%), Positives = 238/450 (52%), Gaps = 74/450 (16%)

Query: 14  FLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYG 73
           FL KTYEMV+D++T+  VSW     SF+VWNP DF+RDLLPKYFKHNNFSSFIRQLNTYG
Sbjct: 21  FLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYG 80

Query: 74  FRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQN-LHGQGTPLTESERQGLKDD 132
           FRK+DPE+WEFANEDF+RG    LKNIHRRKPVHSHS QN ++G   PL ESER+ L+++
Sbjct: 81  FRKIDPERWEFANEDFIRGHTHLLKNIHRRKPVHSHSLQNQING---PLAESERRELEEE 137

Query: 133 IERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLE 192
           I RLK EK IL+ +LQR  Q++     QMQ +  R   MEQRQ+ +V+ +   LQ+ G  
Sbjct: 138 INRLKYEKSILVADLQRQNQQQYVINWQMQAMEGRLVAMEQRQKNIVASLCEMLQRRGGA 197

Query: 193 SNFGAHLENH-DRKRRLPRIDYFYDEANIEDNPMGTSQIV-----AGADSAD----ISSS 242
            +      +H  +KRR+P++D F D     D   G  Q V      G D+      +  +
Sbjct: 198 VSSSLLESDHFSKKRRVPKMDLFVD-----DCAAGEEQKVFQFQGIGTDAPAMPPVLPVT 252

Query: 243 NMEKFEQLESSMTFWENIVQDVGQSC-------------FQPNSSLELDESTSCADSPAI 289
           N E F+++E S+   E + Q    +C              +P++++  +E  +      I
Sbjct: 253 NGEAFDRVELSLVSLEKLFQRANDACTAAEEMYSHGHGGTEPSTAICPEEMNTAPMETGI 312

Query: 290 SCIQLNVDARPKSPGIDMNSEPAVTAATE-PVPSKEPET----------ATTIPLQAGV- 337
             +QL     P SP          T  TE P   + PE            T  P QA V 
Sbjct: 313 D-LQLPASLHPSSPNTGNAHLHLSTELTESPGFVQSPELPMAEIREDIHVTRYPTQADVN 371

Query: 338 ------------------------NDVFWEQFLTENPGSSDAQEVQSERKECDGKKNENK 373
                                   NDVFWE+FLTE P S      +SER+E    K++ K
Sbjct: 372 SEIASSTDTSQDGTSETEASHGPTNDVFWERFLTETPRSCLD---ESERQE--SPKDDVK 426

Query: 374 PADHGKFWWNMRNVNSLAEQMGHLTPAERT 403
                  + +   V+ + EQMGHL  AE+T
Sbjct: 427 AELGCNGFHHREKVDQITEQMGHLASAEQT 456

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84T61|HSFA1_ORYSJ Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1

 Score =  244 bits (622), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 171/480 (35%), Positives = 237/480 (49%), Gaps = 95/480 (19%)

Query: 6   GSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSF 65
           G + + PPFL KTYEMVDD +TD  VSW   N SF+VWN P+FARDLLPKYFKH+NFSSF
Sbjct: 30  GVATAPPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSF 89

Query: 66  IRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSN-QNLHGQGTPL--- 121
           +RQLNTYGFRKVDP++WEFANE F+RGQ   LK I+RRKP H ++  Q       P+   
Sbjct: 90  VRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPAC 149

Query: 122 TESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSF 181
            E  + G++++IE LK++K +L+ EL R  Q++Q  + Q+Q L +R Q MEQRQQ+M+SF
Sbjct: 150 VEVGKFGMEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSF 209

Query: 182 VGRALQKPGLESNFGAHLENHDR-------KRRLPRIDYFYD--EANIEDNPMGTSQIVA 232
           + +A+  PG  + F    EN  R       KRRLP+ D   D   A+++   +    ++ 
Sbjct: 210 LAKAMHSPGFLAQFVQQNENSRRRIVASNKKRRLPKQDGSLDSESASLDGQIVKYQPMIN 269

Query: 233 GADSADISS----SNMEKFEQLESSMTF-WENIV---QDVGQSCFQPNSSLELDE----- 279
            A  A +       +  +FE + +S  F  EN +   Q +  S    NS + L E     
Sbjct: 270 EAAKAMLRKILKLDSSHRFESMGNSDNFLLENYMPNGQGLDSSSSTRNSGVTLAEVPANS 329

Query: 280 -----------STSCADS-PAISCIQLNVDARPKSPGIDMNSEPAVTAATEPVPSK---- 323
                      S  C+ S P I C  +  +  PK    +M++ P+V  A  P P+     
Sbjct: 330 GLPYVATSSGLSAICSTSTPQIQCPVVLDNGIPKEVP-NMSAVPSVPKAVAPGPTDINIL 388

Query: 324 ------------------------EPETATTIPLQA---------------------GVN 338
                                    PE   ++P +                       + 
Sbjct: 389 EFPDLQDIVAEENVDIPGGGFEMPGPEGVFSLPEEGDDSVPIETDEILYNDDTQKLPAII 448

Query: 339 DVFWEQFLTENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLT 398
           D FWEQFL  +P S D  EV       D    + K    G  W    N+ +L EQMG L+
Sbjct: 449 DSFWEQFLVASPLSVDNDEV-------DSGVLDQKETQQGNGWTKAENMANLTEQMGLLS 501

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94BZ5|HSFA5_ARATH Heat stress transcription factor A-5 OS=Arabidopsis thaliana GN=HSFA5 PE=2 SV=1

 Score =  226 bits (576), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 152/420 (36%), Positives = 220/420 (52%), Gaps = 81/420 (19%)

Query: 14  FLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYG 73
           FL KTYEMVDDSSTD  VSWS++N SFIVWN  +F+R LLP YFKHNNFSSFIRQLNTYG
Sbjct: 24  FLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTYG 83

Query: 74  FRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESERQGLKDDI 133
           FRK+DPE+WEF N+DF++ Q   LKNIHRRKP+HSHS    H   +  T+ ER  L++ +
Sbjct: 84  FRKIDPERWEFLNDDFIKDQKHLLKNIHRRKPIHSHS----HPPASS-TDQERAVLQEQM 138

Query: 134 ERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLES 193
           ++L +EK  +  +L + +Q++   + Q + + E    ME RQ+K+++F+  A++ P    
Sbjct: 139 DKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTEHVDDMENRQKKLLNFLETAIRNPTFVK 198

Query: 194 NFGAHLEN-----HDRKRRLPRIDYFYDEANIEDNPMGTSQIVAGADSADISSSNMEKFE 248
           NFG  +E      +++KRRLP ++    +   ED+ +  S   +  +S +I   N     
Sbjct: 199 NFGKKVEQLDISAYNKKRRLPEVE--QSKPPSEDSHLDNSSGSSRRESGNIFHQNFSNKL 256

Query: 249 QLE-----SSMTFWENIVQDVGQ---------SCFQPNSS-------------LELDEST 281
           +LE     S M    + +Q   +         S   PN++             LEL ++ 
Sbjct: 257 RLELSPADSDMNMVSHSIQSSNEEGASPKGILSGGDPNTTLTKREGLPFAPEALELADTG 316

Query: 282 SCA------DSPAISCIQLNVDARPKSPGIDMNSEPAVTAATEPVPSKEPE--TATTIPL 333
           +C       D+  +  +Q  + +  ++ G   +    +T A+ P+P K       TT+  
Sbjct: 317 TCPRRLLLNDNTRVETLQQRLTSSEETDG-SFSCHLNLTLASAPLPDKTASQIAKTTLKS 375

Query: 334 Q---------------------------------AGVNDVFWEQFLTENPGSSDAQEVQS 360
           Q                                 A VNDVFWEQFLTE PGSSD +E  S
Sbjct: 376 QELNFNSIETSASEKNRGRQEIAVGGSQANAAPPARVNDVFWEQFLTERPGSSDNEEASS 435

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQM7|HFA1D_ARATH Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2

 Score =  225 bits (573), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 108/197 (54%), Positives = 149/197 (75%), Gaps = 8/197 (4%)

Query: 7   SSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFI 66
           SSN+ PPFL+KTY+MVDD +TD  VSWS++N SFIVW PP+FARDLLPK FKHNNFSSF+
Sbjct: 31  SSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFV 90

Query: 67  RQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHS-----NQNLHGQGTPL 121
           RQLNTYGFRKVDP++WEFANE F+RGQ   L++I RRKP H        +Q+ +GQ + +
Sbjct: 91  RQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSV 150

Query: 122 T---ESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKM 178
           +   E  + GL++++ERLK++K +L+ EL R  Q++Q  ++Q+Q + +R Q ME RQQ++
Sbjct: 151 SACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMENRQQQL 210

Query: 179 VSFVGRALQKPGLESNF 195
           +SF+ +A+Q P   S F
Sbjct: 211 MSFLAKAVQSPHFLSQF 227

Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCW5|HFA1E_ARATH Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2

 Score =  223 bits (568), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/214 (50%), Positives = 148/214 (69%), Gaps = 10/214 (4%)

Query: 9   NSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQ 68
           +S+PPFL+KTY+MVDD  TD  VSWSS N SF+VWN P+FA+  LPKYFKHNNFSSF+RQ
Sbjct: 19  SSIPPFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQ 78

Query: 69  LNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV---HSHSNQNLHGQGTPLTESE 125
           LNTYGFRKVDP++WEFANE F+RGQ + LK+I RRKP         Q  H       E  
Sbjct: 79  LNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSSVGACVEVG 138

Query: 126 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRA 185
           + GL++++ERL+++K +L+ EL R  Q++Q  E  +Q + ++  +MEQRQQ+M+SF+ +A
Sbjct: 139 KFGLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQQMMSFLAKA 198

Query: 186 LQKPGLESNFG-------AHLENHDRKRRLPRID 212
           +Q PG  + F         H+   ++KRRLP  D
Sbjct: 199 VQSPGFLNQFSQQSNEANQHISESNKKRRLPVED 232

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|O81821|HFA1B_ARATH Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2

 Score =  223 bits (568), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 160/460 (34%), Positives = 236/460 (51%), Gaps = 77/460 (16%)

Query: 9   NSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQ 68
           NS+PPFL+KTY+MVDD  T+  VSWSS N SF+VW+ P+F++ LLPKYFKHNNFSSF+RQ
Sbjct: 23  NSVPPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQ 82

Query: 69  LNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGT----PLTES 124
           LNTYGFRKVDP++WEFANE F+RG+ + LK+I RRKP H   NQ      +       E 
Sbjct: 83  LNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEV 142

Query: 125 ERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGR 184
            + G+++++ERLK++K +L+ EL R  Q++Q  E+Q+Q + ++ Q+MEQRQQ+M+SF+ +
Sbjct: 143 GKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAK 202

Query: 185 ALQKPGLESNF--------GAHLENHDRKRRLPRIDYFYDEANIEDNPMG--TSQIVAGA 234
           A+Q PG  +             +   ++KRRLP +D   ++ N  DN       QIV   
Sbjct: 203 AVQSPGFLNQLVQQNNNDGNRQIPGSNKKRRLP-VD---EQENRGDNVANGLNRQIVRYQ 258

Query: 235 DSADISSSNMEKFEQLESSMTFWENI--------------------------VQDVGQSC 268
            S + ++ NM +     S+   +E++                          V  V  + 
Sbjct: 259 PSINEAAQNMLRQFLNTSTSPRYESVSNNPDSFLLGDVPSSTSVDNGNPSSRVSGVTLAE 318

Query: 269 FQPN---SSLELDESTSCADSPAISCIQLNVDARPK---------SPGIDM-NSEPAVTA 315
           F PN   S+       S A  P    +Q N+   P          SP  D+   E     
Sbjct: 319 FSPNTVQSATNQVPEASLAHHPQAGLVQPNIGQSPAQGAAPADSWSPEFDLVGCETDSGE 378

Query: 316 ATEPVPS----------------KEPETATTIPLQAGVNDVFWEQFLT-ENPGSSDAQEV 358
             +P+ +                K  E    +P   G+ D FWEQF + E P  +D  ++
Sbjct: 379 CFDPIMAVLDESEGDAISPEGEGKMNELLEGVPKLPGIQDPFWEQFFSVELPAIADTDDI 438

Query: 359 QSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLT 398
            S   E +    E +P +  +   N + +  L EQMG L+
Sbjct: 439 LSGSVENNDLVLEQEPNEWTR---NEQQMKYLTEQMGLLS 475

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q40152|HSF8_SOLLC Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1

 Score =  221 bits (564), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 108/208 (51%), Positives = 145/208 (69%), Gaps = 16/208 (7%)

Query: 14  FLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYG 73
           FL KTY+MVDD STD  VSWS +N SF+VW+PP+FA+DLLPKYFKHNNFSSF+RQLNTYG
Sbjct: 40  FLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYG 99

Query: 74  FRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHS------NQNLHGQGTP------- 120
           FRKVDP++WEFANE F+RGQ   LK+I RRKP H H+      + N   Q  P       
Sbjct: 100 FRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGNAQQQMQPPGHSASV 159

Query: 121 --LTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKM 178
               E  + GL++++ERLK++K +L+ EL R  Q++Q  ++Q+Q + +R Q ME RQQ+M
Sbjct: 160 GACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQGMVQRLQGMELRQQQM 219

Query: 179 VSFVGRALQKPGLESNFGAHLENHDRKR 206
           +SF+ +A+ +PG  + F    +N   KR
Sbjct: 220 MSFLAKAVNRPGFLAQF-VQQQNESNKR 246

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum lycopersicum (taxid: 4081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
255562528	402	Heat shock factor protein, putative [Ric	0.985	0.987	0.725	1e-167
224114609	406	predicted protein [Populus trichocarpa]	1.0	0.992	0.689	1e-163
224076924	407	predicted protein [Populus trichocarpa]	1.0	0.990	0.680	1e-157
356512543	402	PREDICTED: heat stress transcription fac	0.992	0.995	0.649	1e-150
356525313	402	PREDICTED: heat stress transcription fac	0.992	0.995	0.637	1e-147
5821138	408	heat shock factor [Nicotiana tabacum]	0.995	0.982	0.641	1e-145
16118447	402	heat shock transcription factor [Phaseol	0.992	0.995	0.619	1e-144
356549216	392	PREDICTED: heat stress transcription fac	0.960	0.987	0.631	1e-138
302398869	420	HSF domain class transcription factor [M	0.972	0.933	0.587	1e-137
356555451	392	PREDICTED: heat stress transcription fac	0.960	0.987	0.619	1e-136

>gi|255562528|ref|XP_002522270.1| Heat shock factor protein, putative [Ricinus communis] gi|223538523|gb|EEF40128.1| Heat shock factor protein, putative [Ricinus communis]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 296/408 (72%), Positives = 336/408 (82%), Gaps = 11/408 (2%)

Query: 1   MDDGQGSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHN 60
           MD+ QGSSNSLPPFL+KTYEMVDD ST+  VSWS SNKSFIVWNPP+FARDLLP++FKHN
Sbjct: 1   MDESQGSSNSLPPFLSKTYEMVDDPSTNSVVSWSQSNKSFIVWNPPEFARDLLPRFFKHN 60

Query: 61  NFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGT- 119
           NFSSFIRQLNTYGFRKVDPEQWEFANEDF+RGQP  +KNIHRRKPVHSHS QNL GQG+ 
Sbjct: 61  NFSSFIRQLNTYGFRKVDPEQWEFANEDFIRGQPHLMKNIHRRKPVHSHSLQNLQGQGSN 120

Query: 120 PLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 179
           PLTESERQ LKDDIERLK EKE L+LEL+R E++RQGFE QMQ L+E+ Q ME+RQQ MV
Sbjct: 121 PLTESERQSLKDDIERLKHEKEALVLELKRQERQRQGFEMQMQTLKEKLQQMERRQQTMV 180

Query: 180 SFVGRALQKPGLESNFGAHLE-NHDRKRRLPRIDYFYDEANIEDNPMGTSQIVA--GADS 236
           SFV R LQKPGL  N  + +E  HDRKRRLPRI YFYDEA+IED      Q +A   ADS
Sbjct: 181 SFVARVLQKPGLALNLMSQMEPGHDRKRRLPRIGYFYDEASIED-----CQTIARENADS 235

Query: 237 ADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCIQLNV 296
             ++ SN+E+FEQLESS+T WE+I  DV Q+  Q +S++ELDESTSCA+SPAISC+ LN+
Sbjct: 236 NSVALSNVEQFEQLESSLTLWESIRDDV-QTNIQRDSTMELDESTSCAESPAISCVPLNI 294

Query: 297 DARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQA-GVNDVFWEQFLTENPGSSDA 355
           D RPKSP IDMNSEPA  +A EP P KE    T  P  A GVNDVFWEQFLTENPGS+D 
Sbjct: 295 DIRPKSPTIDMNSEPAAASAPEPDPPKEQAAGTAPPTVATGVNDVFWEQFLTENPGSTDT 354

Query: 356 QEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAERT 403
           QEVQSERK+ + +KNE KP+D  KFWWNMRNVN+LAEQMGHLTPAERT
Sbjct: 355 QEVQSERKDSNDRKNEIKPSDQEKFWWNMRNVNNLAEQMGHLTPAERT 402

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114609|ref|XP_002316809.1| predicted protein [Populus trichocarpa] gi|222859874|gb|EEE97421.1| predicted protein [Populus trichocarpa]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 280/406 (68%), Positives = 328/406 (80%), Gaps = 3/406 (0%)

Query: 1   MDDGQGSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHN 60
           MD+ QG+SNSLPPFLAK YEMVDD S+D  VSWS +NKSF+VWNPP+FARDLLP++FKHN
Sbjct: 1   MDESQGTSNSLPPFLAKAYEMVDDPSSDSIVSWSQNNKSFVVWNPPEFARDLLPRFFKHN 60

Query: 61  NFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTP 120
           NFSSFIRQLNTYGFRK+DPEQWEFANEDF+RGQP  +KNIHRRKPVHSHS QNL GQG+ 
Sbjct: 61  NFSSFIRQLNTYGFRKIDPEQWEFANEDFIRGQPHLMKNIHRRKPVHSHSMQNLQGQGSN 120

Query: 121 L-TESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 179
           L T+SERQ +KDDIE+LK++K+ L+LELQ+ EQER+GFE Q++ L+E+ Q  E  QQ +V
Sbjct: 121 LLTDSERQSMKDDIEKLKRDKQALILELQKQEQERKGFEMQIEGLKEKLQQTECIQQTIV 180

Query: 180 SFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMGTSQIVA--GADSA 237
           SFV R L KPGL  N    LE  DRKRRLPRI Y Y EA+ EDN M TSQ ++   ADS 
Sbjct: 181 SFVARVLPKPGLALNIMPQLEGRDRKRRLPRIGYLYSEASNEDNQMVTSQALSRENADSN 240

Query: 238 DISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCIQLNVD 297
            ++  NME+FEQLESS+TFWEN+V D+GQ+    NS++E+D+STS A SPAISC+ LNVD
Sbjct: 241 SVALLNMEQFEQLESSLTFWENMVHDIGQTYNYNNSTIEMDDSTSGAQSPAISCVHLNVD 300

Query: 298 ARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWEQFLTENPGSSDAQE 357
            RPKSPGIDMNSEP+   A EPV  KE    T   +  GVNDVFWEQFLTENPGS++AQE
Sbjct: 301 FRPKSPGIDMNSEPSAAVAPEPVSPKEQLAGTAPTVATGVNDVFWEQFLTENPGSTNAQE 360

Query: 358 VQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAERT 403
           VQSERK+ DG+K E KP D GKFWWNMRNVN+L EQMGHLTPAERT
Sbjct: 361 VQSERKDSDGRKGEIKPVDPGKFWWNMRNVNNLTEQMGHLTPAERT 406

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076924|ref|XP_002305052.1| predicted protein [Populus trichocarpa] gi|222848016|gb|EEE85563.1| predicted protein [Populus trichocarpa]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 277/407 (68%), Positives = 321/407 (78%), Gaps = 4/407 (0%)

Query: 1   MDDGQGSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHN 60
           MD+ QGS NSLPPFLAKTYEMVDD STD  VSWS SNKSF VW+PP+FARDLLP++FKHN
Sbjct: 1   MDESQGSPNSLPPFLAKTYEMVDDPSTDPIVSWSQSNKSFTVWDPPEFARDLLPRFFKHN 60

Query: 61  NFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTP 120
           NFSSFIRQLNTYGFRK+DPEQWEFANEDF+RGQP  +KNIHRRKPVHSHS QNL GQG+ 
Sbjct: 61  NFSSFIRQLNTYGFRKIDPEQWEFANEDFIRGQPFLMKNIHRRKPVHSHSLQNLQGQGSN 120

Query: 121 L-TESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 179
           L T+SERQ +KDDIERLK++KE L+LELQ  EQER+GFE Q++ L+E+ Q ME+RQQ MV
Sbjct: 121 LLTDSERQSMKDDIERLKRDKEALILELQMQEQERKGFEMQIEGLKEKLQQMERRQQTMV 180

Query: 180 SFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANI-EDNPMGTSQIVA--GADS 236
           SFV R + KPGL  N    LE HDRKRRLPRI   + EA+  EDN   TSQ ++   AD 
Sbjct: 181 SFVTRVMPKPGLALNLMPQLEGHDRKRRLPRIGCLHSEASSNEDNQTVTSQALSRENADG 240

Query: 237 ADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCIQLNV 296
              +  NME+F+QLESS+TFWEN+V DV Q+      ++E+DESTS A+SPAISC QL  
Sbjct: 241 NSFALLNMEQFDQLESSLTFWENMVNDVVQTHSHNTKTIEMDESTSGAESPAISCAQLIF 300

Query: 297 DARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWEQFLTENPGSSDAQ 356
           D RPK+PGIDMNSEP++    EPV  KE    T   +  GVNDVFWEQFLTENPGS+D Q
Sbjct: 301 DFRPKTPGIDMNSEPSIAVVPEPVSPKEQPAGTAPAVATGVNDVFWEQFLTENPGSTDTQ 360

Query: 357 EVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAERT 403
           EVQSERK+ DG+KNE KP D  KFWW+MRNVN+L EQMGHLTPAERT
Sbjct: 361 EVQSERKDSDGRKNEIKPGDPRKFWWDMRNVNNLTEQMGHLTPAERT 407

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512543|ref|XP_003524978.1| PREDICTED: heat stress transcription factor A-4a-like [Glycine max]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 263/405 (64%), Positives = 314/405 (77%), Gaps = 5/405 (1%)

Query: 1   MDDGQGSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHN 60
           MDD QGSS+SLPPFLAKTYEMVDD STD  VSWS ++KSFIVWNPP+FARDLLP++FKHN
Sbjct: 1   MDDAQGSSSSLPPFLAKTYEMVDDPSTDSVVSWSITSKSFIVWNPPEFARDLLPRFFKHN 60

Query: 61  NFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTP 120
           NFSSFIRQLNTYGFRKVDPEQWEFAN+DFVRGQP  +KNIHRRKPVHSHS QNL  QG P
Sbjct: 61  NFSSFIRQLNTYGFRKVDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQAQG-P 119

Query: 121 LTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVS 180
           + E+ERQ   D+IE+LK +KE LL+ELQ+++ E Q +E QM   ++R + +EQ QQKMVS
Sbjct: 120 IGEAERQSFTDEIEKLKHDKEQLLVELQKYQHEWQAYEIQMHSSKDRLEKLEQNQQKMVS 179

Query: 181 FVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMGTSQIVA--GADSAD 238
            V   LQKP +  N     E  DRKRRLPR  +FYDEA++ED  M TSQ++    AD+  
Sbjct: 180 SVSHVLQKPVISVNILPLTETMDRKRRLPRSGHFYDEASVED-AMETSQMLPRENADNTT 238

Query: 239 ISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCIQLNVDA 298
           + + N+E+ +QLESSM FWE IV D+G +  Q  S+++ DESTSCADSP+ISC QL+V+ 
Sbjct: 239 VLTLNVERLDQLESSMAFWEAIVHDIGDTFVQIQSNMDFDESTSCADSPSISCAQLDVEV 298

Query: 299 RPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWEQFLTENPGSSDAQEV 358
           RPKSPGIDMNSEP   A  EPV SKE    TT+    GVNDVFWEQFLTE+PG+S+ QEV
Sbjct: 299 RPKSPGIDMNSEPTTAAVPEPVASKEQPAGTTV-AATGVNDVFWEQFLTEDPGASETQEV 357

Query: 359 QSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAERT 403
           QSERKE DG+KNE KP+D  KFWWN  N N+L EQMGH+  AE+T
Sbjct: 358 QSERKEYDGRKNEGKPSDLNKFWWNKWNANNLPEQMGHVGQAEKT 402

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525313|ref|XP_003531269.1| PREDICTED: heat stress transcription factor A-4a-like [Glycine max]

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 258/405 (63%), Positives = 311/405 (76%), Gaps = 5/405 (1%)

Query: 1   MDDGQGSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHN 60
           MDD QGSSNSLPPFLAKTYEMVDD STD  VSWS ++KSFIVWNPP+FARDLLP++FKHN
Sbjct: 1   MDDAQGSSNSLPPFLAKTYEMVDDPSTDSVVSWSVTSKSFIVWNPPEFARDLLPRFFKHN 60

Query: 61  NFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTP 120
           NFSSFIRQLNTYGF+KVDPEQWEFAN+DFVRGQP  +KNIHRRKPVHSHS QNL  QG P
Sbjct: 61  NFSSFIRQLNTYGFKKVDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQAQG-P 119

Query: 121 LTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVS 180
           L ESERQ   D+IE+LK +KE LL+ELQ+++ E Q +E Q+   ++R + +EQ QQ+MVS
Sbjct: 120 LGESERQSFTDEIEKLKHDKEQLLVELQKYQHEWQAYEIQIHCSKDRLEKLEQNQQRMVS 179

Query: 181 FVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMGTSQIVA--GADSAD 238
            V   LQKP +  N     E  DRKRRLPR  +FYDE  +ED  + T Q++    AD   
Sbjct: 180 SVSHVLQKPVISVNILPLTETLDRKRRLPRSGHFYDEDGVED-AIETCQMLPRENADHTT 238

Query: 239 ISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCIQLNVDA 298
           + + N+E+ +QLESSM FWE IV D+G +  Q  SS++LDESTSCADSP++SC QL+V+ 
Sbjct: 239 VLTLNVERLDQLESSMAFWEAIVHDIGDTFVQIQSSMDLDESTSCADSPSLSCAQLDVEV 298

Query: 299 RPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWEQFLTENPGSSDAQEV 358
           R KSPGIDMNSEP   A  EPV SKE    TT+    GVNDVFWEQFLTE+PG+S+ +EV
Sbjct: 299 RHKSPGIDMNSEPTTAAVPEPVASKEQPAGTTVA-ATGVNDVFWEQFLTEDPGASETREV 357

Query: 359 QSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAERT 403
           QSERK+ +G+KNE KP+D  KFWWN RN N+L EQMGH+  AE+T
Sbjct: 358 QSERKDYEGRKNEGKPSDLNKFWWNKRNANNLPEQMGHVGQAEKT 402

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5821138|dbj|BAA83711.1| heat shock factor [Nicotiana tabacum]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 263/410 (64%), Positives = 312/410 (76%), Gaps = 9/410 (2%)

Query: 1   MDDGQGSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHN 60
           MD+   S+N+LPPFL KTYEMVDD S+D  VSWSSSNKSF+VWNPPDFARDLLP+YFKHN
Sbjct: 1   MDEATCSTNALPPFLTKTYEMVDDPSSDAIVSWSSSNKSFVVWNPPDFARDLLPRYFKHN 60

Query: 61  NFSSFIRQLNTYGFRKVDPEQWEFANED-FVRGQPERLKNIHRRKPVHSHSNQNLHGQGT 119
           NFSSFIRQLNTYGFRKVDPE+WEFANED F RGQP  LKNIHRRKPVHSHS QNLHG  +
Sbjct: 61  NFSSFIRQLNTYGFRKVDPEKWEFANEDNFFRGQPHLLKNIHRRKPVHSHSAQNLHGLSS 120

Query: 120 PLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 179
           PLTESERQG K+DI++LK E E L L+LQRH+Q+RQG E QMQ+  ER Q +E RQ+ M+
Sbjct: 121 PLTESERQGYKEDIQKLKHENESLHLDLQRHQQDRQGLELQMQVFTERVQHVEHRQKTML 180

Query: 180 SFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMGTSQIVA--GADSA 237
           S + R L KP  + +    L+ +DRKRRLP     Y+E ++ED    +S+ +     + +
Sbjct: 181 SALARMLDKPVTDLSRMPQLQVNDRKRRLPGNSCLYNETDLEDTRAISSRALTWENMNPS 240

Query: 238 DISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCIQLNVD 297
            + + N E   QL+SS+TFWEN++QDV Q+  Q N SLELDESTSCADSPAIS  QLNVD
Sbjct: 241 SLLTINAELLNQLDSSLTFWENVLQDVDQAWIQQNCSLELDESTSCADSPAISYTQLNVD 300

Query: 298 ARPKSPGIDMNSEPAVTAATEP-VPSKEPETA---TTIPLQAGVNDVFWEQFLTENPGSS 353
             PK+  IDMNSEP   A T P V + E + A   TT  +  GVND+FWEQFLTENPGS 
Sbjct: 301 VGPKASDIDMNSEP--NANTNPEVAAPEDQAAVAGTTTNVPTGVNDIFWEQFLTENPGSV 358

Query: 354 DAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAERT 403
           DA EVQSERK+   KKNE+KP D GKFWWNM++VNSLAEQ+GHLTPAE+T
Sbjct: 359 DASEVQSERKDIGNKKNESKPVDSGKFWWNMKSVNSLAEQLGHLTPAEKT 408

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16118447|gb|AAL12248.1| heat shock transcription factor [Phaseolus acutifolius]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/405 (61%), Positives = 311/405 (76%), Gaps = 5/405 (1%)

Query: 1   MDDGQGSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHN 60
           MD+  GSS SLPPFLAKTYEMVDD ST+  VSWS S+KSFIVWNPP+FARDLLP++FKHN
Sbjct: 1   MDEALGSSCSLPPFLAKTYEMVDDLSTNSIVSWSVSSKSFIVWNPPEFARDLLPRFFKHN 60

Query: 61  NFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTP 120
           NFSSFIRQLNTYGF+K+DPEQWEFAN+DFVRGQP  +KNIHRRKPVHSHS QNL  QG P
Sbjct: 61  NFSSFIRQLNTYGFKKIDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQAQG-P 119

Query: 121 LTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVS 180
           L +SERQG  D IE+LK++KE LL+ELQ+ + E Q +E Q+    +R + +EQ+Q KMVS
Sbjct: 120 LGDSERQGFTDGIEKLKRDKERLLVELQKFQHEWQTYEIQIHCSNDRLEKLEQKQHKMVS 179

Query: 181 FVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMGTSQIVA--GADSAD 238
            +   LQKP L  N     E  DRKRRLPR  ++YDE++IED  + TSQ++    A++  
Sbjct: 180 SISHVLQKPVLAVNILPLTETMDRKRRLPRSGHYYDESSIED-AIETSQMLPRENAENTT 238

Query: 239 ISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCIQLNVDA 298
           + + N+E+ +QLESS+ FWE I  D+G +  Q  S+++ DESTSCADSP+ISC QL+VD 
Sbjct: 239 VLTLNVERLDQLESSVAFWEAIAHDIGDNFAQIQSNMDFDESTSCADSPSISCAQLDVDV 298

Query: 299 RPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWEQFLTENPGSSDAQEV 358
           RPKS GIDMNSEP   A  +P+ SK+     T+    GVNDVFWEQFLTE+PG+S+ QEV
Sbjct: 299 RPKSSGIDMNSEPTAAAVPDPLASKDQPAGITVA-ATGVNDVFWEQFLTEDPGASETQEV 357

Query: 359 QSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAERT 403
           QSERK+CDG+KNE KP DH KFWWN+RN N+L+E MGH+  AE+T
Sbjct: 358 QSERKDCDGRKNEGKPNDHSKFWWNIRNANNLSEPMGHVGQAEKT 402

Source: Phaseolus acutifolius

Species: Phaseolus acutifolius

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549216|ref|XP_003542993.1| PREDICTED: heat stress transcription factor A-4a-like [Glycine max]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 252/399 (63%), Positives = 307/399 (76%), Gaps = 12/399 (3%)

Query: 1   MDDGQGSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHN 60
           M++ QGSS+SLPPFL K YEMVDD ST+  VSWS++N+SFIVWNPP+F+RDLLPKYFKHN
Sbjct: 2   MEEAQGSSSSLPPFLTKIYEMVDDPSTNSIVSWSATNRSFIVWNPPEFSRDLLPKYFKHN 61

Query: 61  NFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQG-T 119
           NFSSFIRQLNTYGFRK+DPEQWEFAN+DFVRGQP  LKNIHRRKPVHSHS QN+ GQG +
Sbjct: 62  NFSSFIRQLNTYGFRKIDPEQWEFANDDFVRGQPHLLKNIHRRKPVHSHSLQNIQGQGVS 121

Query: 120 PLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 179
            LTESERQ  KD+IE+LK EKE LL EL+ HEQE + +E Q+Q   +R + +E++Q+ +V
Sbjct: 122 SLTESERQSFKDEIEKLKHEKEQLLRELEMHEQEWKMYEVQLQHSNDRLEKLEKKQENLV 181

Query: 180 SFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMGTSQIV--AGADSA 237
           S V + LQKPG+  N     EN DRKRRLPR   F D+A+IED+ M TSQ++    AD A
Sbjct: 182 SSVSQVLQKPGIALNLLLLTENMDRKRRLPRSGLFSDDASIEDH-METSQVLPRENADGA 240

Query: 238 DISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCIQLNVD 297
            I SS+ E+ + LESSMTFWENI  DVG    Q + +L+ DESTSCADSPAISC+QL V+
Sbjct: 241 SIFSSSTERLDLLESSMTFWENITHDVGDVFVQSHLNLDFDESTSCADSPAISCVQLEVE 300

Query: 298 ARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWEQFLTENPGSSDAQE 357
            +PKS GI+++SEPAV AA +   SKE +   T PL  GVND+FWE+FLTENPGSS+ QE
Sbjct: 301 DQPKSHGINVSSEPAVVAAPDLDASKE-QPVETAPLTTGVNDIFWERFLTENPGSSEMQE 359

Query: 358 VQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGH 396
            QSER++ DG+ N        KFWWN+RNVN+  EQMGH
Sbjct: 360 AQSEREDSDGRSN-------AKFWWNIRNVNNPPEQMGH 391

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398869|gb|ADL36729.1| HSF domain class transcription factor [Malus x domestica]

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 253/431 (58%), Positives = 304/431 (70%), Gaps = 39/431 (9%)

Query: 1   MDDGQGSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHN 60
           M++ QG ++SLPPFL KTYEMVDD+S D  VSWS+SNKSFIVWNPP+FARDLLPK+FKHN
Sbjct: 1   MEEAQGGTSSLPPFLCKTYEMVDDASIDSIVSWSASNKSFIVWNPPEFARDLLPKFFKHN 60

Query: 61  NFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNL----HG 116
           NFSSFIRQLNTYGFRK+DPEQWEFAN+DF+RGQP  +KNIHRRKPVHSHS QNL     G
Sbjct: 61  NFSSFIRQLNTYGFRKIDPEQWEFANDDFIRGQPHLMKNIHRRKPVHSHSLQNLQVQGQG 120

Query: 117 QGTPLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQ 176
           QGT L+E+ERQ +KD+I+RLK EKE L +ELQRHEQER G E QMQ L++R Q ME +QQ
Sbjct: 121 QGTSLSEAERQSMKDEIKRLKHEKERLAVELQRHEQERHGLELQMQFLKDRLQHMEGQQQ 180

Query: 177 KMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMGTSQIVAGADS 236
            M +FV R LQKP + SN    LE  +RKRRLPR  + +D+AN  +N M +S+ V   + 
Sbjct: 181 TMAAFVARVLQKPEIASNPVPQLEVRERKRRLPRTSWPFDDANNGNNQMVSSEAVIRENG 240

Query: 237 ADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCIQLNV 296
                  +EK EQLES +TFWE+ + DVG      N+   +DESTS  +S A+S IQLNV
Sbjct: 241 G------LEKLEQLESFLTFWEDTIHDVGH-----NNIPLVDESTSGNESTAVSSIQLNV 289

Query: 297 DARPKSPGIDMNSEPAVTAATEPV------------------------PSKEPETATTIP 332
           D + KSP IDMNSEPA   A EP                         PS E    T+  
Sbjct: 290 DIQSKSPKIDMNSEPAAFVAPEPAASQSSIEKTAGIAASAPTTTLIQQPSNEKPAGTSTS 349

Query: 333 LQAGVNDVFWEQFLTENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAE 392
              GVND FWEQFLTENPG+S+AQ+V  E K+ DG+ N++KP DHG+ W NMRNVN+L E
Sbjct: 350 APTGVNDGFWEQFLTENPGTSEAQKVPLEGKDSDGRSNDSKPGDHGRLWCNMRNVNNLTE 409

Query: 393 QMGHLTPAERT 403
           QMGHLTP E+T
Sbjct: 410 QMGHLTPVEKT 420

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555451|ref|XP_003546045.1| PREDICTED: heat stress transcription factor A-4a-like [Glycine max]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 247/399 (61%), Positives = 304/399 (76%), Gaps = 12/399 (3%)

Query: 1   MDDGQGSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHN 60
           M++ QG+S+SLPPFL KTYEMVDD ST+  VSWS++N+SFIVWNPP+F+RDLLPKYFKHN
Sbjct: 2   MEEAQGNSSSLPPFLTKTYEMVDDPSTNSIVSWSATNRSFIVWNPPEFSRDLLPKYFKHN 61

Query: 61  NFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTP 120
           NFSSFIRQLNTYGFRK+DPEQWEFAN+DFVRGQP  LKNIHRRKPVHSHS QN+ GQG+ 
Sbjct: 62  NFSSFIRQLNTYGFRKIDPEQWEFANDDFVRGQPHLLKNIHRRKPVHSHSLQNIQGQGSS 121

Query: 121 -LTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 179
            LTESER+  KD+IE+LK EKE LL EL+RHEQE + +E Q+Q   +  + +E++Q+ +V
Sbjct: 122 LLTESERRSFKDEIEKLKHEKERLLRELERHEQEWKMYEVQLQHSNDCLEKLEKKQESLV 181

Query: 180 SFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMGTSQIVA--GADSA 237
           S V + LQKPG+  N     EN DRKRRLPR   F D+A IED+ M TS ++    AD +
Sbjct: 182 SSVSQVLQKPGIALNLLLLTENMDRKRRLPRSGLFSDDAGIEDH-METSPVLPRENADGS 240

Query: 238 DISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCIQLNVD 297
            I SS+ E+ + LESSMTFWE+I  DVG    Q + +L+ D STSCADSPAISC+QL V+
Sbjct: 241 SIFSSSTERLDLLESSMTFWEDITHDVGDIFVQSHLNLDFDASTSCADSPAISCVQLEVE 300

Query: 298 ARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWEQFLTENPGSSDAQE 357
            +PKSPGI+MNSEP+V A  +   SKE +     P+  GVND+FWE+FLTENPGSS+ QE
Sbjct: 301 DQPKSPGINMNSEPSVVAVPDLDASKE-QPVGKAPVTTGVNDIFWERFLTENPGSSEMQE 359

Query: 358 VQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGH 396
            QSERK+ DG+ N        KFWWN+RNVN+  EQMGH
Sbjct: 360 AQSERKDSDGRSN-------AKFWWNIRNVNNPPEQMGH 391

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
TAIR|locus:2117139	401	HSF A4A "AT4G18880" [Arabidops	0.970	0.975	0.503	9.7e-96
TAIR|locus:2172003	345	RHA1 "AT5G45710" [Arabidopsis	0.617	0.721	0.452	1.4e-74
TAIR|locus:2129276	466	AT-HSFA5 "AT4G13980" [Arabidop	0.600	0.519	0.388	3.7e-50
TAIR|locus:2149050	481	HSF3 "AT5G16820" [Arabidopsis	0.575	0.482	0.4	7.7e-48
TAIR|locus:2075447	468	HSFA1E "AT3G02990" [Arabidopsi	0.684	0.589	0.356	3.3e-47
TAIR|locus:2028326	485	HSFA1D "AT1G32330" [Arabidopsi	0.501	0.416	0.426	2.8e-42
TAIR|locus:2005495	495	HSF1 "AT4G17750" [Arabidopsis	0.828	0.674	0.332	1.3e-38
TAIR|locus:2094339	406	HSFA6B "AT3G22830" [Arabidopsi	0.563	0.559	0.364	1.3e-34
TAIR|locus:2057371	345	HSFA2 "AT2G26150" [Arabidopsis	0.454	0.530	0.396	1.7e-34
TAIR|locus:2144603	412	HSFA3 "AT5G03720" [Arabidopsis	0.563	0.550	0.340	3.4e-32

TAIR|locus:2117139 HSF A4A "AT4G18880" [Arabidopsis thaliana (taxid:3702)]

 Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
 Identities = 208/413 (50%), Positives = 258/413 (62%)

Query:     1 MDDGQ-G-SSNSLPPFLAKTYEMXXXXXXXXXXXXXXXNKSFIVWNPPDFARDLLPKYFK 58
             MD+   G SS+SLPPFL KTYEM               NKSFIVWNPP+F+RDLLP++FK
Sbjct:     1 MDENNHGVSSSSLPPFLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFK 60

Query:    59 HNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQG 118
             HNNFSSFIRQLNTYGFRK DPEQWEFAN+DFVRGQP  +KNIHRRKPVHSHS  NL  Q 
Sbjct:    61 HNNFSSFIRQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLPNLQAQL 120

Query:   119 TPLTESERQGXXXXXXXXXXXXXXXXXXXXXXXXXXXGFESQMQLLRERFQLMEQRQQKM 178
              PLT+SER                              FE Q++ L+ER Q ME+RQ+ M
Sbjct:   121 NPLTDSERVRMNNQIERLTKEKEGLLEELHKQDEEREVFEMQVKELKERLQHMEKRQKTM 180

Query:   179 VSFVGRALQKPGLESNFGAHL-ENHDRKRRLPRIDYFYDEANIEDNPMGTSQIVAGADSA 237
             VSFV + L+KPGL  N    + E ++RKRR PRI++F DE  +E+N   T  +V    S 
Sbjct:   181 VSFVSQVLEKPGLALNLSPCVPETNERKRRFPRIEFFPDEPMLEENK--TCVVVREEGST 238

Query:   238 DISSSNME-KFEQLESSMTFWENIVQDVGQSCFQPNS--SLELDESTSCADSPAISCIQL 294
               SS   E + EQLESS+  WEN+V D  +S  Q  S  +L++DES++  +SP +SCIQL
Sbjct:   239 SPSSHTREHQVEQLESSIAIWENLVSDSCESMLQSRSMMTLDVDESSTFPESPPLSCIQL 298

Query:   295 NVDARPKSPG----IDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWEQFLTENP 350
             +VD+R KSP     IDMN EP  +     V +  P      P  AG ND FW+QF +ENP
Sbjct:   299 SVDSRLKSPPSPRIIDMNCEPDGSKEQNTVAAPPP------PPVAGANDGFWQQFFSENP 352

Query:   351 GSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAERT 403
             GS++ +EVQ ERK  D K       +  K WWN RNVN++ EQ+GHLT +ER+
Sbjct:   353 GSTEQREVQLERK--DDKDKAGVRTE--KCWWNSRNVNAITEQLGHLTSSERS 401

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2172003 RHA1 "AT5G45710" [Arabidopsis thaliana (taxid:3702)]

 Score = 538 (194.4 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
 Identities = 119/263 (45%), Positives = 155/263 (58%)

Query:     1 MDDGQGSSNSLPPFLAKTYEMXXXXXXXXXXXXXXXNKSFIVWNPPDFARDLLPKYFKHN 60
             MD+  G S+SLPPFL KTYEM               NKSFIV NP +F+RDLLP++FKH 
Sbjct:     1 MDENNGGSSSLPPFLTKTYEMVDDSSSDSVVAWSENNKSFIVKNPAEFSRDLLPRFFKHK 60

Query:    61 NFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTP 120
             NFSSFIRQLNTYGFRKVDPE+WEF N+DFVRG+P  +KNIHRRKPVHSHS  NL  Q  P
Sbjct:    61 NFSSFIRQLNTYGFRKVDPEKWEFLNDDFVRGRPYLMKNIHRRKPVHSHSLVNLQAQN-P 119

Query:   121 LTESERQGXXXXXXXXXXXXXXXXXXXXXXXXXXXGFESQMQLLRERFQLMEQRQQKMVS 180
             LTESER+                             FE Q+  L++R Q MEQ Q+ +V+
Sbjct:   120 LTESERRSMEDQIERLKNEKEGLLAELQNQEQERKEFELQVTTLKDRLQHMEQHQKSIVA 179

Query:   181 FVGRALQKPGLESNFGAHLENHDRKRR------LPRIDYFYDEAN-IEDNPMGTSQIVA- 232
             +V + L KPGL  N    LENH+R++R      LP      ++   +E +      +V+ 
Sbjct:   180 YVSQVLGKPGLSLN----LENHERRKRRFQENSLPPSSSHIEQVEKLESSLTFWENLVSE 235

Query:   233 GADSADISSSNMEKFEQLESSMT 255
               + + + SS+M+  +  ESS++
Sbjct:   236 SCEKSGLQSSSMDH-DAAESSLS 257

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=RCA;IMP

GO:0009958 "positive gravitropism" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA;IMP

GO:0048530 "fruit morphogenesis" evidence=IMP

GO:0007165 "signal transduction" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2129276 AT-HSFA5 "AT4G13980" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.7e-50, Sum P(2) = 3.7e-50
 Identities = 99/255 (38%), Positives = 132/255 (51%)

Query:     4 GQGSSNSLPPFLAKTYEMXXXXXXXXXXXXXXXNKSFIVWNPPDFARDLLPKYFKHNNFS 63
             G+G+    P FL KTYEM               N SFIVWN  +F+R LLP YFKHNNFS
Sbjct:    15 GEGAGGPAP-FLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNFS 73

Query:    64 SFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTE 123
             SFIRQLNTYGFRK+DPE+WEF N+DF++ Q   LKNIHRRKP+HSHS    H   +  T+
Sbjct:    74 SFIRQLNTYGFRKIDPERWEFLNDDFIKDQKHLLKNIHRRKPIHSHS----HPPASS-TD 128

Query:   124 SERQGXXXXXXXXXXXXXXXXXXXXXXXXXXXGFESQMQLLRERFQLMEQRQQKMVSFVG 183
              ER                               + Q + + E    ME RQ+K+++F+ 
Sbjct:   129 QERAVLQEQMDKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTEHVDDMENRQKKLLNFLE 188

Query:   184 RALQKPGLESNFGAHLENHD-----RKRRLPRIDYFYDEANIEDNPMGTSQIVAGADSAD 238
              A++ P    NFG  +E  D     +KRRLP ++    +   ED+ +  S   +  +S +
Sbjct:   189 TAIRNPTFVKNFGKKVEQLDISAYNKKRRLPEVEQ--SKPPSEDSHLDNSSGSSRRESGN 246

Query:   239 ISSSNMEKFEQLESS 253
             I   N     +LE S
Sbjct:   247 IFHQNFSNKLRLELS 261

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2149050 HSF3 "AT5G16820" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
 Identities = 100/250 (40%), Positives = 139/250 (55%)

Query:     9 NSLPPFLAKTYEMXXXXXXXXXXXXXXXNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQ 68
             NS+PPFL+KTY+M               N SF+VW+ P+F++ LLPKYFKHNNFSSF+RQ
Sbjct:    23 NSVPPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQ 82

Query:    69 LNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQN-LHGQGTPL---TES 124
             LNTYGFRKVDP++WEFANE F+RG+ + LK+I RRKP H   NQ     Q + +    E 
Sbjct:    83 LNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEV 142

Query:   125 ERQGXXXXXXXXXXXXXXXXXXXXXXXXXXXGFESQMQLLRERFQLMEQRQQKMVSFVGR 184
              + G                             E+Q+Q + ++ Q+MEQRQQ+M+SF+ +
Sbjct:   143 GKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAK 202

Query:   185 ALQKPGL-------ESNFG-AHLENHDRKRRLPRIDYFYDEANIEDNPMG--TSQIVAGA 234
             A+Q PG         +N G   +   ++KRRLP +D   ++ N  DN       QIV   
Sbjct:   203 AVQSPGFLNQLVQQNNNDGNRQIPGSNKKRRLP-VD---EQENRGDNVANGLNRQIVRYQ 258

Query:   235 DSADISSSNM 244
              S + ++ NM
Sbjct:   259 PSINEAAQNM 268

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;IMP;RCA

TAIR|locus:2075447 HSFA1E "AT3G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
 Identities = 106/297 (35%), Positives = 158/297 (53%)

Query:     9 NSLPPFLAKTYEMXXXXXXXXXXXXXXXNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQ 68
             +S+PPFL+KTY+M               N SF+VWN P+FA+  LPKYFKHNNFSSF+RQ
Sbjct:    19 SSIPPFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQ 78

Query:    69 LNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQN---LHGQGTPLTESE 125
             LNTYGFRKVDP++WEFANE F+RGQ + LK+I RRKP      Q     H       E  
Sbjct:    79 LNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSSVGACVEVG 138

Query:   126 RQGXXXXXXXXXXXXXXXXXXXXXXXXXXXGFESQMQLLRERFQLMEQRQQKMVSFVGRA 185
             + G                             E  +Q + ++  +MEQRQQ+M+SF+ +A
Sbjct:   139 KFGLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQQMMSFLAKA 198

Query:   186 LQKPGLESNFGA-------HLENHDRKRRLPRIDYFYDEANIEDNPM-GTS-QIVAGADS 236
             +Q PG  + F         H+   ++KRRLP ++   D+ N   + + G S QIV    S
Sbjct:   199 VQSPGFLNQFSQQSNEANQHISESNKKRRLP-VE---DQMNSGSHGVNGLSRQIVRYQSS 254

Query:   237 A-DISSSNMEKFEQLESSMTFWENIVQDVGQSCFQ--PNSSLELDESTSCADSPAIS 290
               D +++ +++ +Q+ ++ +  E++  + G       PNS++  D  +S   SP ++
Sbjct:   255 MNDATNTMLQQIQQMSNAPSH-ESLSSNNGSFLLGDVPNSNIS-DNGSSSNGSPEVT 309

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2028326 HSFA1D "AT1G32330" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
 Identities = 90/211 (42%), Positives = 122/211 (57%)

Query:     7 SSNSLPPFLAKTYEMXXXXXXXXXXXXXXXNKSFIVWNPPDFARDLLPKYFKHNNFSSFI 66
             SSN+ PPFL+KTY+M               N SFIVW PP+FARDLLPK FKHNNFSSF+
Sbjct:    31 SSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFV 90

Query:    67 RQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHS----HS-NQNLHGQGTPL 121
             RQLNTYGFRKVDP++WEFANE F+RGQ   L++I RRKP H     H  +Q+ +GQ + +
Sbjct:    91 RQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSV 150

Query:   122 T---ESERQGXXXXXXXXXXXXXXXXXXXXXXXXXXXGFESQMQLLRERFQLMEQRQQKM 178
             +   E  + G                             ++Q+Q + +R Q ME RQQ++
Sbjct:   151 SACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMENRQQQL 210

Query:   179 VSFVGRALQKPGLESNF-GAHLENHDRKRRL 208
             +SF+ +A+Q P   S F     + ++  RR+
Sbjct:   211 MSFLAKAVQSPHFLSQFLQQQNQQNESNRRI 241

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 119/358 (33%), Positives = 175/358 (48%)

Query:     7 SSNSLPP-FLAKTYEMXXXXXXXXXXXXXXXNKSFIVWNPPDFARDLLPKYFKHNNFSSF 65
             ++NSLPP FL+KTY+M               N SFIVW+PP+F+RDLLPKYFKHNNFSSF
Sbjct:    45 NANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSF 104

Query:    66 IRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSH----SN---QNL-HGQ 117
             +RQLNTYGFRKVDP++WEFANE F+RGQ   LK I RRK V  H    SN   Q L  GQ
Sbjct:   105 VRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQLSQGQ 164

Query:   118 GT-----PLTESERQGXXXXXXXXXXXXXXXXXXXXXXXXXXXGFESQMQLLRERFQLME 172
             G+        E  + G                             ++++Q+L +  Q+ME
Sbjct:   165 GSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLVKHLQVME 224

Query:   173 QRQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMGTSQIVA 232
             QRQQ+++SF+ +A+Q P   S F    +  D    +   +    +  + ++    ++  +
Sbjct:   225 QRQQQIMSFLAKAVQNPTFLSQFIQ--KQTDSNMHVTEAN---KKRRLREDSTAATESNS 279

Query:   233 GADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCI 292
              + S + S   + K++ L +    W  +  D         SS       +  +   I+  
Sbjct:   280 HSHSLEASDGQIVKYQPLRNDSMMWNMMKTDDKYPFLDGFSSPNQVSGVTLQEVLPITSG 339

Query:   293 QLNVDARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPL-QAGVNDVFWEQFL-TE 348
             Q    A   S G  ++  P+ T+ + P  +  PET+    L +  +ND   E F+ TE
Sbjct:   340 QSQAYASVPS-GQPLSYLPS-TSTSLP-DTIMPETSQIPQLTRESINDFPTENFMDTE 394

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2094339 HSFA6B "AT3G22830" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
 Identities = 90/247 (36%), Positives = 121/247 (48%)

Query:    12 PPFLAKTYEMXXXXXXXXXXXXXXXNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNT 71
             PPFL KTY++               N SFIVW+P  F+  LLP++FKHNNFSSF+RQLNT
Sbjct:    60 PPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNT 119

Query:    72 YGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTP-------LTES 124
             YGFRKV+P++WEFANE F+RGQ   LKNI RRK   ++SNQ    Q +          E 
Sbjct:   120 YGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRK-TSNNSNQMQQPQSSEQQSLDNFCIEV 178

Query:   125 ERQGXXXXXXXXXXXXXXXXXXXXXXXXXXXGFESQMQLLRERFQLMEQRQQKMVSFVGR 184
              R G                             +  + L+ E+ +  E +Q++M+SF+ R
Sbjct:   179 GRYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTESKQKQMMSFLAR 238

Query:   185 ALQKPGLESNFGAHLENH-------DRKRRLPRIDYFYDEANIED--NPMGTSQIVAGAD 235
             A+Q P          E          +KR+ P ID    + N+ED  +  G    VA + 
Sbjct:   239 AMQNPDFIQQLVEQKEKRKEIEEAISKKRQRP-IDQ--GKRNVEDYGDESGYGNDVAASS 295

Query:   236 SADISSS 242
             SA I  S
Sbjct:   296 SALIGMS 302

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2057371 HSFA2 "AT2G26150" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
 Identities = 73/184 (39%), Positives = 96/184 (52%)

Query:    12 PPFLAKTYEMXXXXXXXXXXXXXXXNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNT 71
             PPFL KTYEM                 SF+VW+   F+  LLP+YFKH+NFSSFIRQLNT
Sbjct:    43 PPFLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNT 102

Query:    72 YGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESERQGXXX 131
             YGFRK+DP++WEFANE F+ GQ   LKNI RR+ +    N N  G G    E  + G   
Sbjct:   103 YGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNM-GLQNVNQQGSGMSCVEVGQYGFDG 161

Query:   132 XXXXXXXXXXXXXXXXXXXXXXXXGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGL 191
                                       +SQ+  + +R  + E+RQQ+M++F+ +AL  P  
Sbjct:   162 EVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMTFLAKALNNPNF 221

Query:   192 ESNF 195
                F
Sbjct:   222 VQQF 225

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0034620 "cellular response to unfolded protein" evidence=IEP;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0010286 "heat acclimation" evidence=RCA;IMP

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2144603 HSFA3 "AT5G03720" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
 Identities = 82/241 (34%), Positives = 119/241 (49%)

Query:     1 MDDGQGSSNSLPPFLAKTYEMXXXXXXXXXXXXXXXNKSFIVWNPPDFARDLLPKYFKHN 60
             +D  QG  N +PPFL+KT+++                 SF+VW+P +FAR +LP+ FKHN
Sbjct:    45 LDILQG--NPIPPFLSKTFDLVDDPTLDPVISWGLTGASFVVWDPLEFARIILPRNFKHN 102

Query:    61 NFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHS---NQNLHGQ 117
             NFSSF+RQLNTYGFRK+D ++WEFANE F+RG+   LKNIHRR+   S+    +     Q
Sbjct:   103 NFSSFVRQLNTYGFRKIDTDKWEFANEAFLRGKKHLLKNIHRRRSPQSNQTCCSSTSQSQ 162

Query:   118 GTPLTESERQGXXXXXXXXXXXXXXXXXXXXXXXXXXXGFESQMQLLRERFQLMEQRQQK 177
             G+P   +E  G                           G    +  + +R +  EQRQ++
Sbjct:   163 GSP---TEVGGEIEKLRKERRALMEEMVELQQQSR---GTARHVDTVNQRLKAAEQRQKQ 216

Query:   178 MVSFVGRALQKPG-LE--SNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMGTSQIVAGA 234
             ++SF+ +  Q  G LE   NF    +         R  +       +D+P G   +   A
Sbjct:   217 LLSFLAKLFQNRGFLERLKNFKGKEKGGALGLEKARKKFIKHHQQPQDSPTGGEVVKYEA 276

Query:   235 D 235
             D
Sbjct:   277 D 277

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

GO:0009408 "response to heat" evidence=IEP;RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49403	HFA4A_ARATH	No assigned EC number	0.5700	0.9503	0.9551	yes	no
Q94J16	HFA4B_ORYSJ	No assigned EC number	0.4301	0.9478	0.8681	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00110679 hypothetical protein (406 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	403
smart00415	105	smart00415, HSF, heat shock factor	9e-51
pfam00447	96	pfam00447, HSF_DNA-bind, HSF-type DNA-binding	5e-49
COG5169	282	COG5169, HSF1, Heat shock transcription factor [Tr	8e-28
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004

>gnl|CDD|214654 smart00415, HSF, heat shock factor

 Score =  165 bits (420), Expect = 9e-51
 Identities = 65/105 (61%), Positives = 79/105 (75%), Gaps = 11/105 (10%)

Query: 10  SLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQL 69
             PPFL K Y +V+D STD  +SWS S KSF++W+P +FA++LLP+YFKHNNFSSF+RQL
Sbjct: 1   QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQL 60

Query: 70  NTYGFRKVDP-----------EQWEFANEDFVRGQPERLKNIHRR 103
           N YGFRKVDP           +QWEFAN DFVRGQPE L+NI R+
Sbjct: 61  NMYGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK 105

Length = 105

>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding

 Score =  160 bits (408), Expect = 5e-49
 Identities = 55/95 (57%), Positives = 68/95 (71%), Gaps = 2/95 (2%)

Query: 13  PFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTY 72
           PFL K YE+++D S D  +SWS    SFI+W+P +FA+ +LPKYFKHNNFSSF+RQLN Y
Sbjct: 1   PFLHKLYEILEDPSYDDIISWSEDGNSFIIWDPEEFAKQVLPKYFKHNNFSSFVRQLNMY 60

Query: 73  GFRKVDPE--QWEFANEDFVRGQPERLKNIHRRKP 105
           GF KV  +   WEFA+ +F RGQ E L  I RRK 
Sbjct: 61  GFHKVKDDRNGWEFAHPNFKRGQKELLSKIKRRKS 95

Length = 96

>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription]

 Score =  110 bits (277), Expect = 8e-28
 Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 6   GSSNSLPP--FLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFS 63
            SS    P  F+ K Y+++++      + WS   +SF++ +P +F + +LP+YFKH NF+
Sbjct: 3   MSSRWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFA 62

Query: 64  SFIRQLNTYGFRKV----------DPEQWEFANEDFVRGQPERLKNIHRRK----PVHSH 109
           SF+RQLN YGF KV          +   WEF N++F  G  E LK I R+K     V S+
Sbjct: 63  SFVRQLNKYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKRKKAPSNRVDSN 122

Query: 110 SNQNLHGQGTPLTESERQG--LKDDIERLKKEKEILLLEL 147
           +          +         L + +  L    + LLL L
Sbjct: 123 NESKDAMMNIEVENIILPQSELYNSLSSLSNVNQTLLLYL 162

Length = 282

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 22/89 (24%), Positives = 45/89 (50%)

Query: 122 TESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSF 181
            E+E++ L+D+++ L++EKE L  EL+  E E    + +++ LRER + +E + +++   
Sbjct: 868 LEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVE 927

Query: 182 VGRALQKPGLESNFGAHLENHDRKRRLPR 210
           +    ++   E       E      RL  
Sbjct: 928 LPELEEELEEEYEDTLETELEREIERLEE 956

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	403
KOG0627	304	consensus Heat shock transcription factor [Transcr	100.0
smart00415	105	HSF heat shock factor.	100.0
PF00447	103	HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0	100.0
COG5169	282	HSF1 Heat shock transcription factor [Transcriptio	99.98
PF00178	85	Ets: Ets-domain; InterPro: IPR000418 Transcription	95.36
smart00413	87	ETS erythroblast transformation specific domain. v	92.39
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	91.88
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	88.25
PRK15422	79	septal ring assembly protein ZapB; Provisional	87.26
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	86.15
KOG3806	177	consensus Predicted transcription factor [Transcri	85.85
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	85.51
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	84.55
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	84.1
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	81.79
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	80.86

>KOG0627 consensus Heat shock transcription factor [Transcription]

Probab=100.00  E-value=2.5e-43  Score=346.78  Aligned_cols=194  Identities=43%  Similarity=0.721  Sum_probs=171.4

Q ss_pred             CCCCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccccccCcCCchhhhhccccccceeec--CCCce
Q 015631            6 GSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVD--PEQWE   83 (403)
Q Consensus         6 ~~~~~~~~Fl~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLPkyFkh~nfsSFvRQLN~YGF~Kv~--~~~~e   83 (403)
                      +..+++++|+.|||.||+||++++||+|+++|++|||||+..|++.+||+||||+||+|||||||+|||||++  ++.|+
T Consensus         7 ~~~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wE   86 (304)
T KOG0627|consen    7 SEASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWE   86 (304)
T ss_pred             cccCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCcee
Confidence            3455899999999999999999999999999999999999999999999999999999999999999999999  99999


Q ss_pred             eccCccccCcccccccccccCCCCCCCCC--CCCCCCCCCc-----hhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015631           84 FANEDFVRGQPERLKNIHRRKPVHSHSNQ--NLHGQGTPLT-----ESERQGLKDDIERLKKEKEILLLELQRHEQERQG  156 (403)
Q Consensus        84 F~h~~F~Rg~~~lL~~IkRkkp~~s~s~~--~~~~q~~~l~-----~~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~  156 (403)
                      |+|++|+||+++||++|+||++.++....  ........+.     ...+..+..++.+|++++..|+.++.+|++++..
T Consensus        87 F~n~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~  166 (304)
T KOG0627|consen   87 FSNPCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDA  166 (304)
T ss_pred             ecChhHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            99999999999999999999987655431  1110001111     1124457899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhccccc
Q 015631          157 FESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHL  199 (403)
Q Consensus       157 l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq~P~f~~~l~q~~  199 (403)
                      ++.+++.+.+++...+.+|+.++.|+++++..|+|..++.+..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  209 (304)
T KOG0627|consen  167 LRATIQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ  209 (304)
T ss_pred             HHHHHHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence            9999999999999999999999999999999999999877643

>smart00415 HSF heat shock factor

Probab=100.00  E-value=1.8e-34  Score=244.68  Aligned_cols=94  Identities=69%  Similarity=1.287  Sum_probs=90.7

Q ss_pred             CCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccccccCcCCchhhhhccccccceeecC----------
Q 015631           10 SLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDP----------   79 (403)
Q Consensus        10 ~~~~Fl~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLPkyFkh~nfsSFvRQLN~YGF~Kv~~----------   79 (403)
                      .+|.|+.|||+||+|+++++||+|+++|++|+|.|+..|.+.|||+||||+||+||+||||+|||+|+..          
T Consensus         1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~   80 (105)
T smart00415        1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT   80 (105)
T ss_pred             CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence            4789999999999999999999999999999999999999999999999999999999999999999975          


Q ss_pred             -CCceeccCccccCccccccccccc
Q 015631           80 -EQWEFANEDFVRGQPERLKNIHRR  103 (403)
Q Consensus        80 -~~~eF~h~~F~Rg~~~lL~~IkRk  103 (403)
                       +.|+|+|++|+||+++||.+|+||
T Consensus        81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk  105 (105)
T smart00415       81 SDQWEFANPDFVRGQPELLRNIKRK  105 (105)
T ss_pred             CCceEEECcCccCcCHHHHHhCcCC
Confidence             679999999999999999999996

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []

Probab=100.00  E-value=1.4e-34  Score=243.71  Aligned_cols=93  Identities=52%  Similarity=1.021  Sum_probs=81.4

Q ss_pred             cHHHHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccccccCcCCchhhhhccccccceeecCC---------Cce
Q 015631           13 PFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPE---------QWE   83 (403)
Q Consensus        13 ~Fl~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLPkyFkh~nfsSFvRQLN~YGF~Kv~~~---------~~e   83 (403)
                      .||.|||+||+||.+++||+|+++|++|||+|+..|++.|||+||+|+||+||+||||+|||+|+...         .|+
T Consensus         1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~   80 (103)
T PF00447_consen    1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE   80 (103)
T ss_dssp             HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred             ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence            49999999999999999999999999999999999999999999999999999999999999999643         389


Q ss_pred             eccCccccCcccccccccccCC
Q 015631           84 FANEDFVRGQPERLKNIHRRKP  105 (403)
Q Consensus        84 F~h~~F~Rg~~~lL~~IkRkkp  105 (403)
                      |+|++|+||++++|..|+|+++
T Consensus        81 f~h~~F~r~~~~lL~~I~r~~~  102 (103)
T PF00447_consen   81 FYHPNFRRGQPDLLSKIKRRKS  102 (103)
T ss_dssp             EEETT-BTTBCCCTTTS---TT
T ss_pred             ECCcCccCCCHHHHhhCccCCC
Confidence            9999999999999999999874

Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....

>COG5169 HSF1 Heat shock transcription factor [Transcription]

Probab=99.98  E-value=1.1e-33  Score=276.24  Aligned_cols=101  Identities=40%  Similarity=0.808  Sum_probs=94.2

Q ss_pred             CCCCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccccccCcCCchhhhhccccccceeec-C-----
Q 015631            6 GSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVD-P-----   79 (403)
Q Consensus         6 ~~~~~~~~Fl~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLPkyFkh~nfsSFvRQLN~YGF~Kv~-~-----   79 (403)
                      +....++.|+.|||.||++|++.++|+|+++|+||||+|++.|.+.|||+||||+||+|||||||+|||||+. .     
T Consensus         5 ~~~~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~   84 (282)
T COG5169           5 SRWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRS   84 (282)
T ss_pred             cCCCchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCccccc
Confidence            4556778999999999999999999999999999999999999999999999999999999999999999996 2     


Q ss_pred             ----CCceeccCccccCcccccccccccCCC
Q 015631           80 ----EQWEFANEDFVRGQPERLKNIHRRKPV  106 (403)
Q Consensus        80 ----~~~eF~h~~F~Rg~~~lL~~IkRkkp~  106 (403)
                          ..|+|.|++|++|..++|+.|+|++..
T Consensus        85 ~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~  115 (282)
T COG5169          85 YYNENVWEFGNKNFQLGMIELLKKIKRKKAP  115 (282)
T ss_pred             ccchhheeecCchhccCcHHHHHHhhhhhcC
Confidence                349999999999999999999997653

>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []

Probab=95.36  E-value=0.0038  Score=51.71  Aligned_cols=59  Identities=22%  Similarity=0.325  Sum_probs=45.6

Q ss_pred             HHHHHHhccCCCCCCceEEcC-CCCeEEEECCcchhhccc-ccccCcCCchhhhhcccccc
Q 015631           15 LAKTYEMVDDSSTDLTVSWSS-SNKSFIVWNPPDFARDLL-PKYFKHNNFSSFIRQLNTYG   73 (403)
Q Consensus        15 l~KLy~mved~~~~~iI~Ws~-~G~sFiI~d~~~F~~~VL-PkyFkh~nfsSFvRQLN~YG   73 (403)
                      ..=|.++|+|+++.++|+|.+ .|..|.|.|++.+++.=- -+--...+|.++-|-|..|.
T Consensus         5 w~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy   65 (85)
T PF00178_consen    5 WQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYY   65 (85)
T ss_dssp             HHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHh
Confidence            344678899999999999998 999999999999987311 12234467899999998774

The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....

>smart00413 ETS erythroblast transformation specific domain

Probab=92.39  E-value=0.092  Score=43.88  Aligned_cols=58  Identities=19%  Similarity=0.288  Sum_probs=43.6

Q ss_pred             HHHHHhccCCCCCCceEEcC-CCCeEEEECCcchhhcccc-cccCcCCchhhhhcccccc
Q 015631           16 AKTYEMVDDSSTDLTVSWSS-SNKSFIVWNPPDFARDLLP-KYFKHNNFSSFIRQLNTYG   73 (403)
Q Consensus        16 ~KLy~mved~~~~~iI~Ws~-~G~sFiI~d~~~F~~~VLP-kyFkh~nfsSFvRQLN~YG   73 (403)
                      .=|.++|.||++.++|+|.+ ++.-|.+.|+++.++.=-. +-=...||..+-|-|..|-
T Consensus         6 ~FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy   65 (87)
T smart00413        6 QFLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYY   65 (87)
T ss_pred             HHHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Confidence            34678999999999999998 6778999999887763111 2123467888888888774

variation of the helix-turn-helix motif

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.88  E-value=0.98  Score=36.49  Aligned_cols=51  Identities=25%  Similarity=0.411  Sum_probs=40.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015631          129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV  179 (403)
Q Consensus       129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml  179 (403)
                      +.-+|+.||..+..|.+|.+.+++....++.+-..|++....-+.+.+.++
T Consensus        23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL   73 (79)
T COG3074          23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL   73 (79)
T ss_pred             HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577999999999999999999999999998888888877665444444443

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=88.25  E-value=3.4  Score=40.12  Aligned_cols=64  Identities=20%  Similarity=0.350  Sum_probs=50.1

Q ss_pred             hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015631          124 SERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ  187 (403)
Q Consensus       124 ~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq  187 (403)
                      .+.+.+..++..|+++...|.....+++......+.++..|++++..++...+.|.-+|.+++.
T Consensus        49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~  112 (251)
T PF11932_consen   49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID  112 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677777777777777777777777777777888888888888888888888888887776

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=87.26  E-value=3.9  Score=33.70  Aligned_cols=52  Identities=27%  Similarity=0.404  Sum_probs=35.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015631          129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVS  180 (403)
Q Consensus       129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~  180 (403)
                      |.-+|+.||..+..|..|++.++.....+..+.+.|++....-+.+.+.++.
T Consensus        23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG   74 (79)
T PRK15422         23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG   74 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678888888888888888886666666666666666555544444444444

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=86.15  E-value=5.8  Score=34.99  Aligned_cols=59  Identities=20%  Similarity=0.426  Sum_probs=39.7

Q ss_pred             hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015631          124 SERQGLKDDIERLKKEKEILLLELQRHEQERQGF---ESQMQLLRERFQLMEQRQQKMVSFV  182 (403)
Q Consensus       124 ~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l---~~qvq~L~erl~~~Eq~Qqqml~fL  182 (403)
                      .|...+..++.+|...+..+..||.++-..+..+   ..++..|+..+..++.+-+.++..|
T Consensus        30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lell   91 (120)
T PF12325_consen   30 GELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELL   91 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455677777777777777888888777766433   4456666677777777666666544

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG3806 consensus Predicted transcription factor [Transcription]

Probab=85.85  E-value=0.66  Score=43.51  Aligned_cols=64  Identities=19%  Similarity=0.323  Sum_probs=46.5

Q ss_pred             CCCCcHHHHHHHhccCCCCCCceEEcC-CCCeEEEECCcchhhccccc-ccCcCCchhhhhccccc
Q 015631            9 NSLPPFLAKTYEMVDDSSTDLTVSWSS-SNKSFIVWNPPDFARDLLPK-YFKHNNFSSFIRQLNTY   72 (403)
Q Consensus         9 ~~~~~Fl~KLy~mved~~~~~iI~Ws~-~G~sFiI~d~~~F~~~VLPk-yFkh~nfsSFvRQLN~Y   72 (403)
                      ++.-.-..=|-++|.|+++.++|+|.. +|--|.+.||++-++.=--+ -=...||.-.-|-|..|
T Consensus        66 sg~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy  131 (177)
T KOG3806|consen   66 SGQIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY  131 (177)
T ss_pred             CchhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence            334445566778899999999999998 78789999999988742221 12246777777777665

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=85.51  E-value=10  Score=30.65  Aligned_cols=51  Identities=16%  Similarity=0.225  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015631          132 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFV  182 (403)
Q Consensus       132 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL  182 (403)
                      .|..|+.++..|..+-..+.+++..+..+.+.|++.....+.+...++.-|
T Consensus        19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl   69 (72)
T PF06005_consen   19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL   69 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333344444444443333333444444444444444444444444444433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=84.55  E-value=7.7  Score=31.28  Aligned_cols=46  Identities=15%  Similarity=0.302  Sum_probs=22.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015631          129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQR  174 (403)
Q Consensus       129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~  174 (403)
                      |+..|..+=.....|..|+..|+.++..+..+...|++......+.
T Consensus         9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e   54 (72)
T PF06005_consen    9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE   54 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            4444444444444555555555555555555555554444444433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=84.10  E-value=8.5  Score=34.90  Aligned_cols=59  Identities=20%  Similarity=0.376  Sum_probs=48.6

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015631          127 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRA  185 (403)
Q Consensus       127 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~v  185 (403)
                      ..+..+|..+......|..||..++.+...+...++.+++|+...+..+..+.+.|..+
T Consensus        55 e~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~  113 (140)
T PF10473_consen   55 ETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEK  113 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            44777888888888888899999999999999999999999988888877777666554

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=81.79  E-value=6.3  Score=29.01  Aligned_cols=41  Identities=27%  Similarity=0.420  Sum_probs=32.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015631          129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ  169 (403)
Q Consensus       129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~  169 (403)
                      ++.+-+.||.....|..+..+|.++++.+..++..|...++
T Consensus         3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            45566778888888888888888888888888888877664

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=80.86  E-value=7.5  Score=43.77  Aligned_cols=62  Identities=31%  Similarity=0.453  Sum_probs=52.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015631          128 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKP  189 (403)
Q Consensus       128 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~fL~~vlq~P  189 (403)
                      .+...+..|+.....-..+|..++++...+......|.+|+..+..+|..++.-+.++++..
T Consensus       562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l  623 (717)
T PF10168_consen  562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL  623 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666677888888888889999999999998999999999999999999999888877743

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	403
2ldu_A	125	Solution Nmr Structure Of Heat Shock Factor Protein		8e-14
1hks_A	106	Solution Structure Of The Dna-Binding Domain Of Dro		5e-11
3hts_B	102	Heat Shock Transcription FactorDNA COMPLEX Length =		9e-10
1fym_A	92	Serendipitous Crystal Structure Containing The Heat		2e-09
1fbu_A	90	Heat Shock Transcription Factor Dna Binding Domain		2e-09
1fbs_A	90	Heat Shock Transcription Factor Dna Binding Domain		1e-08
1fbq_A	90	Heat Shock Transcription Factor Dna Binding Domain		1e-08
1fyk_A	92	Serendipitous Crystal Structure Containing The Heat		1e-08

>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr3023c Length = 125

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 61/109 (55%), Gaps = 12/109 (11%)
Query: 6   GSSNSLPPFLAKTYEMXXXXXXXXXXXXXXXNKSFIVWNPPDFARDLLPKYFKHNNFSSF 65
           G SN +P FL K + +                 SF V++   FA+++LPKYFKHNN +SF
Sbjct: 13  GPSN-VPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASF 71
Query: 66  IRQLNTYGFRK---------VDPEQ--WEFANEDFVRGQPERLKNIHRR 103
           +RQLN YGFRK         V PE+   EF +  F+RGQ + L+NI R+
Sbjct: 72  VRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 120

>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila Heat Shock Transcription Factor Length = 106

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 10/103 (9%)
Query: 11  LPPFLAKTYEMXXXXXXXXXXXXXXXNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLN 70
           +P FLAK + +                +SF++ N   FA++LLP  +KHNN +SFIRQLN
Sbjct: 4   VPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLN 63
Query: 71  TYGFRKV----------DPEQWEFANEDFVRGQPERLKNIHRR 103
            YGF K+          D ++ EF++  F R  P  L  I R+
Sbjct: 64  MYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX Length = 102

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 12 PPFLAKTYEMXXXXXXXXXXXXXXXNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNT 71
          P F+ K + M                +S +V N   F +++LPKYFKH+NF+SF+RQLN 
Sbjct: 13 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 72
Query: 72 YGFRKV-----------DPEQWEFANE 87
          YG+ KV           +  +WEF NE
Sbjct: 73 YGWHKVQDVKSGSMLSNNDSRWEFENE 99

>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna In A Tail-To-Tail Orientation Length = 92

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 12 PPFLAKTYEMXXXXXXXXXXXXXXXNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNT 71
          P F+ K + M                +S +V N   F +++LPKYFKH+NF+SF+RQLN 
Sbjct: 3  PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 62
Query: 72 YGFRKV-----------DPEQWEFANE 87
          YG+ KV           +  +WEF NE
Sbjct: 63 YGWHKVQDVKSGSMLSNNDSRWEFENE 89

>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Length = 90

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 12 PPFLAKTYEMXXXXXXXXXXXXXXXNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNT 71
          P F+ K + M                +S +V N   F +++LPKYFKH+NF+SF+RQLN 
Sbjct: 1  PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 60
Query: 72 YGFRKV-----------DPEQWEFANE 87
          YG+ KV           +  +WEF NE
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237a Mutation Length = 90

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 12 PPFLAKTYEMXXXXXXXXXXXXXXXNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNT 71
          P F+ K + M                +S +V N   F +++L KYFKH+NF+SF+RQLN 
Sbjct: 1  PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNM 60
Query: 72 YGFRKV-----------DPEQWEFANE 87
          YG+ KV           +  +WEF NE
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237k Mutation Length = 90

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 12 PPFLAKTYEMXXXXXXXXXXXXXXXNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNT 71
          P F+ K + M                +S +V N   F +++L KYFKH+NF+SF+RQLN 
Sbjct: 1  PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLNM 60
Query: 72 YGFRKV-----------DPEQWEFANE 87
          YG+ KV           +  +WEF NE
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna That Is Translationally Disordered Length = 92

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 12 PPFLAKTYEMXXXXXXXXXXXXXXXNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNT 71
          P F+ K +                  +S +V N   F +++LPKYFKH+NF+SF+RQLN 
Sbjct: 3  PAFVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNX 62
Query: 72 YGFRKV-----------DPEQWEFANE 87
          YG+ KV           +  +WEF NE
Sbjct: 63 YGWHKVQDVKSGSXLSNNDSRWEFENE 89
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	403
2ldu_A	125	Heat shock factor protein 1; structural genomics,	5e-52
1hks_A	106	Heat-shock transcription factor; transcription reg	4e-51
3hts_B	102	Heat shock transcription factor; transcription reg	4e-43
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125

 Score =  169 bits (429), Expect = 5e-52
 Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 11/117 (9%)

Query: 3   DGQGSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNF 62
                 +++P FL K + +V D  TD  + WS S  SF V++   FA+++LPKYFKHNN 
Sbjct: 9   SHMAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNM 68

Query: 63  SSFIRQLNTYGFRKV-----------DPEQWEFANEDFVRGQPERLKNIHRRKPVHS 108
           +SF+RQLN YGFRKV           + +  EF +  F+RGQ + L+NI R+    S
Sbjct: 69  ASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVS 125

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106

 Score =  166 bits (422), Expect = 4e-51
 Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 10/105 (9%)

Query: 9   NSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQ 68
           + +P FLAK + +VDD+ T+  + W+   +SF++ N   FA++LLP  +KHNN +SFIRQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61

Query: 69  LNTYGFRKV----------DPEQWEFANEDFVRGQPERLKNIHRR 103
           LN YGF K+          D ++ EF++  F R  P  L  I R+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Length = 102

 Score =  145 bits (367), Expect = 4e-43
 Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 11/98 (11%)

Query: 3   DGQGSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNF 62
                S + P F+ K + MV+D S +  + WS+S +S +V N   F +++LPKYFKH+NF
Sbjct: 4   RASVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNF 63

Query: 63  SSFIRQLNTYGFRKV-----------DPEQWEFANEDF 89
           +SF+RQLN YG+ KV           +  +WEF NE  
Sbjct: 64  ASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENERH 101

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 8e-05
 Identities = 54/364 (14%), Positives = 100/364 (27%), Gaps = 111/364 (30%)

Query: 107 HSH----SNQNLHGQGTPLTESERQGLKD-------DIER--LKKE--KEILLLELQRHE 151
           H H    + ++ +     L+  E   + +       D+ +  L KE    I++    +  
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM---SKDA 60

Query: 152 QERQGFESQMQLLRERFQLMEQRQQKMVS-FVGRALQK---------------PGLESNF 195
                           F  +  +Q++MV  FV   L+                P + +  
Sbjct: 61  VSG---------TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR- 110

Query: 196 GAHLENHDR---------KRRLPRIDYFYD--EANIEDNP--------MGTS--QIVAGA 234
             ++E  DR         K  + R+  +    +A +E  P        +  S    VA  
Sbjct: 111 -MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-- 167

Query: 235 DSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCIQL 294
              D+  S   K +       FW N    +   C  P + LE+ +             Q+
Sbjct: 168 --LDVCLS--YKVQCKMDFKIFWLN----LKN-CNSPETVLEMLQKL---------LYQI 209

Query: 295 --NVDARPK-SPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDV----FWEQF-- 345
             N  +R   S  I +            + SK  E    +     + +V     W  F  
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-----LLNVQNAKAWNAFNL 264

Query: 346 ------LTENPGSSDAQEVQSERKEC--DGKKNENKPADHGKF--WWNMRNVNSLAEQMG 395
                  T     +D     +                        + + R    L  ++ 
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-PQDLPREVL 323

Query: 396 HLTP 399
              P
Sbjct: 324 TTNP 327

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	403
1hks_A	106	Heat-shock transcription factor; transcription reg	100.0
2ldu_A	125	Heat shock factor protein 1; structural genomics,	100.0
3hts_B	102	Heat shock transcription factor; transcription reg	99.97
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	90.95
1fli_A	98	FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP:	88.47
1awc_A	110	Protein (GA binding protein alpha); complex (trans	87.08
2ypr_A	102	Protein FEV; transcription; 2.64A {Homo sapiens} P	86.94
2dao_A	118	Transcription factor ETV6; ETS domain, structural	86.85
1wwx_A	107	E74-like factor 5 ESE-2B; DNA binding, transcripti	86.38
1bc8_C	93	SAP-1, protein (SAP-1 ETS domain); DNA-binding dom	86.24
4avp_A	106	ETS translocation variant 1; transcription, transc	85.73
1gvj_A	146	C-ETS-1 protein, P54; transcription, autoinhibitio	85.04
3he5_B	52	Synzip2; heterodimeric coiled-coil, de novo protei	83.85
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	82.99
2nny_A	171	C-ETS-1 protein, P54; protein-DNA complex, transcr	80.96

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A

Probab=100.00  E-value=7.6e-40  Score=277.19  Aligned_cols=95  Identities=43%  Similarity=0.823  Sum_probs=91.6

Q ss_pred             CCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccccccCcCCchhhhhccccccceeec----------
Q 015631            9 NSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVD----------   78 (403)
Q Consensus         9 ~~~~~Fl~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLPkyFkh~nfsSFvRQLN~YGF~Kv~----------   78 (403)
                      +++|+||.|||.||+||++++||+|+++|++|||+|+.+|+++|||+||||+||+|||||||+|||+|+.          
T Consensus         2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~   81 (106)
T 1hks_A            2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCC
Confidence            5788999999999999999999999999999999999999999999999999999999999999999984          


Q ss_pred             CCCceeccCccccCccccccccccc
Q 015631           79 PEQWEFANEDFVRGQPERLKNIHRR  103 (403)
Q Consensus        79 ~~~~eF~h~~F~Rg~~~lL~~IkRk  103 (403)
                      ++.|+|+|++|+||+|+||.+|+||
T Consensus        82 ~~~~ef~h~~F~Rg~~~LL~~IkRk  106 (106)
T 1hks_A           82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCceEEECcCccCcCHHHHhhCcCC
Confidence            4689999999999999999999996

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=100.00  E-value=4.1e-39  Score=280.34  Aligned_cols=101  Identities=47%  Similarity=0.844  Sum_probs=96.0

Q ss_pred             CCCCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccccccCcCCchhhhhccccccceeec-------
Q 015631            6 GSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVD-------   78 (403)
Q Consensus         6 ~~~~~~~~Fl~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLPkyFkh~nfsSFvRQLN~YGF~Kv~-------   78 (403)
                      ......++||.|||.||+||++++||+|+++|++|||+|+.+|+++|||+||||+||+|||||||+|||+|+.       
T Consensus        12 ~~~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~   91 (125)
T 2ldu_A           12 AGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGL   91 (125)
T ss_dssp             CSSCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSS
T ss_pred             ccCCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeecccccc
Confidence            4567899999999999999999999999999999999999999999999999999999999999999999984       


Q ss_pred             ----CCCceeccCccccCcccccccccccCCC
Q 015631           79 ----PEQWEFANEDFVRGQPERLKNIHRRKPV  106 (403)
Q Consensus        79 ----~~~~eF~h~~F~Rg~~~lL~~IkRkkp~  106 (403)
                          ++.|+|+||+|+||+++||.+|+||+++
T Consensus        92 ~~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~  123 (125)
T 2ldu_A           92 VKPERDDTEFQHPCFLRGQEQLLENIKRKVTS  123 (125)
T ss_dssp             SSCSSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred             ccCCCCccEEECccccCCCHHHHhhCcCCCCC
Confidence                4679999999999999999999999874

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A

Probab=99.97  E-value=3.4e-33  Score=235.28  Aligned_cols=83  Identities=47%  Similarity=0.869  Sum_probs=77.8

Q ss_pred             CCCCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccccccCcCCchhhhhccccccceeec-------
Q 015631            6 GSSNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVD-------   78 (403)
Q Consensus         6 ~~~~~~~~Fl~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLPkyFkh~nfsSFvRQLN~YGF~Kv~-------   78 (403)
                      .|...+|+||.|||.||+||++++||+|+++|++|||+|+.+|+++|||+||||+||+|||||||+|||+|+.       
T Consensus         7 ~~~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~   86 (102)
T 3hts_B            7 VGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSM   86 (102)
T ss_dssp             ---CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC-------
T ss_pred             CCCCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCcc
Confidence            5778899999999999999999999999999999999999999999999999999999999999999999996       


Q ss_pred             ----CCCceeccCc
Q 015631           79 ----PEQWEFANED   88 (403)
Q Consensus        79 ----~~~~eF~h~~   88 (403)
                          ++.|||.|++
T Consensus        87 ~~~~~~~wEF~n~~  100 (102)
T 3hts_B           87 LSNNDSRWEFENER  100 (102)
T ss_dssp             --CCSCCEEEEECC
T ss_pred             cCCCcCCeEecCCC
Confidence                6789999986

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=90.95  E-value=1.6  Score=34.97  Aligned_cols=53  Identities=26%  Similarity=0.376  Sum_probs=36.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015631          129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSF  181 (403)
Q Consensus       129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~Eq~Qqqml~f  181 (403)
                      +.-+|+.||..+..|..+.+.++.....+..+.+.|++....-+.+.+.|+..
T Consensus        25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk   77 (81)
T 2jee_A           25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45577888888888888887766666667777777776666655555565543

>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=88.47  E-value=0.19  Score=41.78  Aligned_cols=63  Identities=22%  Similarity=0.335  Sum_probs=46.4

Q ss_pred             CCcHHHHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccc-cccCcCCchhhhhcccccc
Q 015631           11 LPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLP-KYFKHNNFSSFIRQLNTYG   73 (403)
Q Consensus        11 ~~~Fl~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLP-kyFkh~nfsSFvRQLN~YG   73 (403)
                      ......=|.++|+|+.+.++|+|...+.-|.+.|+++.++.--. +-=...||.-.-|-|..|.
T Consensus         5 ~~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY   68 (98)
T 1fli_A            5 QIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY   68 (98)
T ss_dssp             SCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred             ceeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence            34455566778899999999999988889999999877763222 1113567888888887774

>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21

Probab=87.08  E-value=0.2  Score=42.38  Aligned_cols=58  Identities=19%  Similarity=0.260  Sum_probs=44.2

Q ss_pred             HHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhccccc-ccCcCCchhhhhcccccc
Q 015631           16 AKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPK-YFKHNNFSSFIRQLNTYG   73 (403)
Q Consensus        16 ~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLPk-yFkh~nfsSFvRQLN~YG   73 (403)
                      .=|.++|.|+++.++|+|...+.-|.+.|+++.++.--.+ -=...||...-|-|..|.
T Consensus         5 qFLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY   63 (110)
T 1awc_A            5 QFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYY   63 (110)
T ss_dssp             HHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG
T ss_pred             HHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Confidence            3467889999999999999988899999998877643221 113467888888888774

>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A

Probab=86.94  E-value=0.25  Score=41.25  Aligned_cols=75  Identities=19%  Similarity=0.294  Sum_probs=53.8

Q ss_pred             CCcHHHHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccc-cccCcCCchhhhhccccccc----eeecCCCceec
Q 015631           11 LPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLP-KYFKHNNFSSFIRQLNTYGF----RKVDPEQWEFA   85 (403)
Q Consensus        11 ~~~Fl~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLP-kyFkh~nfsSFvRQLN~YGF----~Kv~~~~~eF~   85 (403)
                      .-....=|.++|+|+++.++|+|...+.-|.+.|+++.++.--. +-=...||.-+-|-|..|-=    +||...+..|.
T Consensus         7 ~i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vYk   86 (102)
T 2ypr_A            7 QIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYR   86 (102)
T ss_dssp             SCCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEEE
T ss_pred             cEeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEEE
Confidence            33455667788999999999999988889999999888763221 11146789999999888742    45555555554

>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.85  E-value=0.26  Score=42.17  Aligned_cols=80  Identities=21%  Similarity=0.334  Sum_probs=58.2

Q ss_pred             CCCCCCCcHHHHHHHhccCCCCCCceEEcC-CCCeEEEECCcchhhcccc-cccCcCCchhhhhccccc---cc-eeecC
Q 015631            6 GSSNSLPPFLAKTYEMVDDSSTDLTVSWSS-SNKSFIVWNPPDFARDLLP-KYFKHNNFSSFIRQLNTY---GF-RKVDP   79 (403)
Q Consensus         6 ~~~~~~~~Fl~KLy~mved~~~~~iI~Ws~-~G~sFiI~d~~~F~~~VLP-kyFkh~nfsSFvRQLN~Y---GF-~Kv~~   79 (403)
                      |+-++....-.=|.++|.|+.+.++|+|.. ++.-|.+.|++..++.--. +-=...||...-|-|..|   |. +|+..
T Consensus         3 ~~~~g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G   82 (118)
T 2dao_A            3 SGSSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPG   82 (118)
T ss_dssp             CCCCCCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSS
T ss_pred             CccCcchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccC
Confidence            455666777788899999999999999987 4458999999877764222 222457899999999988   33 55555


Q ss_pred             CCceec
Q 015631           80 EQWEFA   85 (403)
Q Consensus        80 ~~~eF~   85 (403)
                      .+..|.
T Consensus        83 ~r~vY~   88 (118)
T 2dao_A           83 QRLLFR   88 (118)
T ss_dssp             SSSEEE
T ss_pred             CeEEEE
Confidence            555554

>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=86.38  E-value=0.37  Score=40.56  Aligned_cols=68  Identities=13%  Similarity=0.137  Sum_probs=50.3

Q ss_pred             CCCCCCCcHHHHHHHhccCCC-CCCceEEcC-CCCeEEEECCcchhhcccc-cccCcCCchhhhhcccccc
Q 015631            6 GSSNSLPPFLAKTYEMVDDSS-TDLTVSWSS-SNKSFIVWNPPDFARDLLP-KYFKHNNFSSFIRQLNTYG   73 (403)
Q Consensus         6 ~~~~~~~~Fl~KLy~mved~~-~~~iI~Ws~-~G~sFiI~d~~~F~~~VLP-kyFkh~nfsSFvRQLN~YG   73 (403)
                      +++++......=|.++|.||+ ..++|+|.. +..-|.+.|+++.++.--. +-=...||...-|-|..|.
T Consensus         3 sg~~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY   73 (107)
T 1wwx_A            3 SGSSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYY   73 (107)
T ss_dssp             CCCCSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence            456677778888999999986 578999986 4567999999887774221 1113578888888888874

>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*

Probab=86.24  E-value=0.28  Score=40.33  Aligned_cols=76  Identities=16%  Similarity=0.275  Sum_probs=54.6

Q ss_pred             CCcHHHHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccc-cccCcCCchhhhhcccccc---c-eeecCCCceec
Q 015631           11 LPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLP-KYFKHNNFSSFIRQLNTYG---F-RKVDPEQWEFA   85 (403)
Q Consensus        11 ~~~Fl~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLP-kyFkh~nfsSFvRQLN~YG---F-~Kv~~~~~eF~   85 (403)
                      ......=|.++|.|+++.++|+|...+.-|.+.|+++.++.--. +-=...||...-|-|..|.   . +|+...+..|.
T Consensus         4 ~i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~   83 (93)
T 1bc8_C            4 AITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK   83 (93)
T ss_dssp             CCCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEE
T ss_pred             cccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEE
Confidence            34555667889999999999999987779999999887774222 1124578899999998874   2 44554555554


Q ss_pred             c
Q 015631           86 N   86 (403)
Q Consensus        86 h   86 (403)
                      .
T Consensus        84 F   84 (93)
T 1bc8_C           84 F   84 (93)
T ss_dssp             E
T ss_pred             e
Confidence            3

>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A

Probab=85.73  E-value=0.35  Score=40.67  Aligned_cols=76  Identities=21%  Similarity=0.325  Sum_probs=54.9

Q ss_pred             CCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccc-cccCcCCchhhhhcccccc---c-eeecCCCcee
Q 015631           10 SLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLP-KYFKHNNFSSFIRQLNTYG---F-RKVDPEQWEF   84 (403)
Q Consensus        10 ~~~~Fl~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLP-kyFkh~nfsSFvRQLN~YG---F-~Kv~~~~~eF   84 (403)
                      +.-....=|.++|+|+++.++|+|...+..|.+.|++..++.--. +-=...||..+-|-|..|-   . +|+...+..|
T Consensus        10 g~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~vY   89 (106)
T 4avp_A           10 GSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVY   89 (106)
T ss_dssp             -CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSSEE
T ss_pred             CcEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeEEE
Confidence            334556667889999999999999998889999999888774222 1124578999999998873   3 5565555555


Q ss_pred             c
Q 015631           85 A   85 (403)
Q Consensus        85 ~   85 (403)
                      .
T Consensus        90 k   90 (106)
T 4avp_A           90 K   90 (106)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*

Probab=85.04  E-value=0.33  Score=42.91  Aligned_cols=78  Identities=19%  Similarity=0.253  Sum_probs=57.2

Q ss_pred             CCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccc-cccCcCCchhhhhccccccc----eeecCCCce
Q 015631            9 NSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLP-KYFKHNNFSSFIRQLNTYGF----RKVDPEQWE   83 (403)
Q Consensus         9 ~~~~~Fl~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLP-kyFkh~nfsSFvRQLN~YGF----~Kv~~~~~e   83 (403)
                      ++......=|.++|.|+.+.++|+|...+-.|.+.|+++.++.--. |-=...||...-|-|..|.=    +|+...+..
T Consensus        37 sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrlv  116 (146)
T 1gvj_A           37 SGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYV  116 (146)
T ss_dssp             CCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSSE
T ss_pred             CCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEE
Confidence            4556677778899999999999999999989999999888874222 11235678888899988743    355545555


Q ss_pred             ecc
Q 015631           84 FAN   86 (403)
Q Consensus        84 F~h   86 (403)
                      |..
T Consensus       117 Y~F  119 (146)
T 1gvj_A          117 YRF  119 (146)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            543

>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=83.85  E-value=3.3  Score=29.51  Aligned_cols=41  Identities=24%  Similarity=0.295  Sum_probs=30.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015631          129 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ  169 (403)
Q Consensus       129 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~  169 (403)
                      +...|.+||+|+-.|..+-+.|+.-..++..++..|+..+.
T Consensus         8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarleneva   48 (52)
T 3he5_B            8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVA   48 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence            67789999999988888777777666666666666655443

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=82.99  E-value=5.9  Score=29.05  Aligned_cols=46  Identities=22%  Similarity=0.296  Sum_probs=37.2

Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015631          126 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM  171 (403)
Q Consensus       126 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~erl~~~  171 (403)
                      ..++..+++.||+++..|..||..--.+...++.+-..|++-+...
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l   50 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL   50 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence            3457789999999999999999988888888888877777766543

>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B

Probab=80.96  E-value=0.68  Score=41.90  Aligned_cols=76  Identities=20%  Similarity=0.287  Sum_probs=54.6

Q ss_pred             CCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccc-cccCcCCchhhhhccccccce----eecCCCcee
Q 015631           10 SLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLP-KYFKHNNFSSFIRQLNTYGFR----KVDPEQWEF   84 (403)
Q Consensus        10 ~~~~Fl~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLP-kyFkh~nfsSFvRQLN~YGF~----Kv~~~~~eF   84 (403)
                      +......=|.++|.|+...++|+|...+..|.+.|+++.++.--. |-=...||.-.-|-|..|-=+    |+...+..|
T Consensus        63 g~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~GkrlvY  142 (171)
T 2nny_A           63 GPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVY  142 (171)
T ss_dssp             SSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTTEE
T ss_pred             CceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeEEE
Confidence            445566667888999999999999999999999999888874222 112356788888888887543    444444555


Q ss_pred             c
Q 015631           85 A   85 (403)
Q Consensus        85 ~   85 (403)
                      .
T Consensus       143 ~  143 (171)
T 2nny_A          143 R  143 (171)
T ss_dssp             E
T ss_pred             E
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	403
d1hksa_	106	a.4.5.22 (A:) Heat-shock transcription factor {Dro	5e-39
d2htsa_	92	a.4.5.22 (A:) Heat-shock transcription factor {Mil	5e-33

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score =  133 bits (336), Expect = 5e-39
 Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 10/105 (9%)

Query: 9   NSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQ 68
           + +P FLAK + +VDD+ T+  + W+   +SF++ N   FA++LLP  +KHNN +SFIRQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61

Query: 69  LNTYGFRKV----------DPEQWEFANEDFVRGQPERLKNIHRR 103
           LN YGF K+          D ++ EF++  F R  P  L  I R+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

 Score =  117 bits (294), Expect = 5e-33
 Identities = 38/87 (43%), Positives = 55/87 (63%), Gaps = 11/87 (12%)

Query: 12 PPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNT 71
          P F+ K + MV+D S +  + WS+S +S +V N   F +++LPKYFKH+NF+SF+RQLN 
Sbjct: 3  PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 62

Query: 72 YGFRKV-----------DPEQWEFANE 87
          YG+ KV           +  +WEF NE
Sbjct: 63 YGWHKVQDVKSGSMLSNNDSRWEFENE 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	403
d1hksa_	106	Heat-shock transcription factor {Drosophila melano	100.0
d2htsa_	92	Heat-shock transcription factor {Milk yeast (Kluyv	99.95
d1pp7u_	114	39 kda initiator binding protein, IBP39, N-termina	91.97
d1flia_	98	Fli-1 {Human (Homo sapiens) [TaxId: 9606]}	90.33
d1awca_	110	GA binding protein (GABP) alpha {Mouse (Mus muscul	90.27
d1duxc_	86	Elk-1 {Human (Homo sapiens) [TaxId: 9606]}	87.18
d1gvja_	142	ETS-1 transcription factor, residues 331-440 {Huma	86.82
d1hbxg_	155	Serum response factor accessory protein 1a, SAP-1	85.59

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=100.00  E-value=1.8e-36  Score=254.30  Aligned_cols=96  Identities=43%  Similarity=0.816  Sum_probs=90.8

Q ss_pred             CCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccccccCcCCchhhhhccccccceeec---------
Q 015631            8 SNSLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVD---------   78 (403)
Q Consensus         8 ~~~~~~Fl~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLPkyFkh~nfsSFvRQLN~YGF~Kv~---------   78 (403)
                      ++++|+||.|||+||+|+++++||+|+++|++|||+|+..|+++|||+||+|++|+||+||||+|||+|+.         
T Consensus         1 g~~vp~F~~KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~~Fk~~~~~SF~RQLn~yGF~kv~~~~~~~~~~   80 (106)
T d1hksa_           1 GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRF   80 (106)
T ss_dssp             CTTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSC
T ss_pred             CCCCCcHHHHHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhhhccccCHHHHHHHHHHCCCEEeeccccccccC
Confidence            35788999999999999999999999999999999999999999999999999999999999999999984         


Q ss_pred             -CCCceeccCccccCccccccccccc
Q 015631           79 -PEQWEFANEDFVRGQPERLKNIHRR  103 (403)
Q Consensus        79 -~~~~eF~h~~F~Rg~~~lL~~IkRk  103 (403)
                       ++.++|+||+|+||+|+||..|+||
T Consensus        81 ~~~~~~f~h~~F~Rg~p~ll~~IkRr  106 (106)
T d1hksa_          81 DRDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TTSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCCccEEECccccCCCHHHHhhCcCC
Confidence             3468999999999999999999986

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.95  E-value=1.8e-30  Score=213.09  Aligned_cols=79  Identities=48%  Similarity=0.925  Sum_probs=73.9

Q ss_pred             CCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccccccCcCCchhhhhccccccceeec-----------
Q 015631           10 SLPPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVD-----------   78 (403)
Q Consensus        10 ~~~~Fl~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLPkyFkh~nfsSFvRQLN~YGF~Kv~-----------   78 (403)
                      +.|+||.|||.||+|+++++||+|+++|++|||+|+..|++.|||+||+|+||+||+||||+|||+|+.           
T Consensus         1 ~~P~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~   80 (92)
T d2htsa_           1 ARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNN   80 (92)
T ss_dssp             CCCHHHHHHHHHHHCGGGTTTCEECTTSSSEEESCHHHHHHHTHHHHCTTCCHHHHHHHHHHTTEECCCCSCTTC----C
T ss_pred             CCCChHHHHHHHHcCcCCCCEEEEeCCCCEEEEeCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCeEEeecCCCCCcccCC
Confidence            368999999999999999999999999999999999999999999999999999999999999999984           


Q ss_pred             CCCceeccCc
Q 015631           79 PEQWEFANED   88 (403)
Q Consensus        79 ~~~~eF~h~~   88 (403)
                      ++.|+|+|+.
T Consensus        81 ~~~~eF~h~~   90 (92)
T d2htsa_          81 DSRWEFENER   90 (92)
T ss_dssp             CCCEEEEESC
T ss_pred             CCCEEEecCC
Confidence            3568898874

>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: 39 kda initiator binding protein, IBP39, N-terminal domain
domain: 39 kda initiator binding protein, IBP39, N-terminal domain
species: Trichomonas vaginalis [TaxId: 5722]

Probab=91.97  E-value=0.018  Score=47.13  Aligned_cols=75  Identities=15%  Similarity=0.282  Sum_probs=53.0

Q ss_pred             CCcHHHHHHHhcc----CCCCCCc--eEEcCCCCeEEEECCcchhhcccccccCcCCchhhhhccccccceeecC---CC
Q 015631           11 LPPFLAKTYEMVD----DSSTDLT--VSWSSSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDP---EQ   81 (403)
Q Consensus        11 ~~~Fl~KLy~mve----d~~~~~i--I~Ws~~G~sFiI~d~~~F~~~VLPkyFkh~nfsSFvRQLN~YGF~Kv~~---~~   81 (403)
                      -..|+.|||.+|.    +|.+...  |.|.+++. |.| |...|+. +|.     .+-.|.-.-|..|||..+.+   +.
T Consensus        27 ~~rF~~KL~naL~~t~~~P~~~~~iGv~Wi~d~~-f~V-nk~~fa~-lLg-----iK~ntlN~Nfr~~gF~q~~~d~~~~   98 (114)
T d1pp7u_          27 NSRFPRKLHMLLTYLASNPQLEEEIGLSWISDTE-FKM-KKKNVAL-VMG-----IKLNTLNVNLRDLAFEQLQHDKGGW   98 (114)
T ss_dssp             GGSHHHHHHHHHHHHTTCHHHHHHHTEEESSSSC-EEE-CHHHHHH-HHT-----CCHHHHHHHHHHTTCEEEEEEETTE
T ss_pred             cCCchHHHHHHHHHHHhChhhhhccceEEecCCE-EEE-ehHHHHH-HHC-----CChhhhcCcccccCceeeecCCCcc
Confidence            5689999999986    3332222  78999997 665 8888887 333     12355566678899999864   33


Q ss_pred             ceeccCccccCc
Q 015631           82 WEFANEDFVRGQ   93 (403)
Q Consensus        82 ~eF~h~~F~Rg~   93 (403)
                      +.++++.|.|..
T Consensus        99 ~~w~~~~F~~nS  110 (114)
T d1pp7u_          99 TQWKRSGFTRNS  110 (114)
T ss_dssp             EEEECTTEETTE
T ss_pred             eeeccCCccccc
Confidence            567899998764

>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Fli-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.33  E-value=0.052  Score=43.11  Aligned_cols=62  Identities=23%  Similarity=0.349  Sum_probs=45.1

Q ss_pred             CcHHHHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccc-cccCcCCchhhhhcccccc
Q 015631           12 PPFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLP-KYFKHNNFSSFIRQLNTYG   73 (403)
Q Consensus        12 ~~Fl~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLP-kyFkh~nfsSFvRQLN~YG   73 (403)
                      ..-..=|.++|.|+++.++|+|...+--|.+.|+++.++.=-. +-=...||...-|-|..|-
T Consensus         6 ~~Lw~FL~~LL~d~~~~~~I~W~~~~geFkl~~~~~VA~lWG~~Knk~~M~YeklSRaLRyYY   68 (98)
T d1flia_           6 IQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY   68 (98)
T ss_dssp             CCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhcCcccCCceEEECCCCEEEeCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Confidence            3445567788999999999999887778999999887763211 1112357888888887763

>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: GA binding protein (GABP) alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.27  E-value=0.042  Score=44.50  Aligned_cols=57  Identities=21%  Similarity=0.269  Sum_probs=43.6

Q ss_pred             HHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccc-cccCcCCchhhhhcccccc
Q 015631           17 KTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLP-KYFKHNNFSSFIRQLNTYG   73 (403)
Q Consensus        17 KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLP-kyFkh~nfsSFvRQLN~YG   73 (403)
                      =|.++|.|+++.++|+|.+.+.-|.+.|+++.++.=-. +-=...||...-|-|..|.
T Consensus         6 FL~~LL~d~~~~~~I~Wt~~~geFkl~d~e~VA~lWG~~Knk~~M~YeklSRaLRyYY   63 (110)
T d1awca_           6 FLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYY   63 (110)
T ss_dssp             HHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG
T ss_pred             HHHHHHcCcccCCCcEEECCCCEEEeCCHHHHHHHHHHhhCCCcccHHHHHHHHHHHH
Confidence            36788899999999999998889999999888763211 1123567888888888773

>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Elk-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.18  E-value=0.049  Score=42.31  Aligned_cols=56  Identities=20%  Similarity=0.310  Sum_probs=41.5

Q ss_pred             HHHhccCCCCCCceEEcC-CCCeEEEECCcchhhcccc-cccCcCCchhhhhcccccc
Q 015631           18 TYEMVDDSSTDLTVSWSS-SNKSFIVWNPPDFARDLLP-KYFKHNNFSSFIRQLNTYG   73 (403)
Q Consensus        18 Ly~mved~~~~~iI~Ws~-~G~sFiI~d~~~F~~~VLP-kyFkh~nfsSFvRQLN~YG   73 (403)
                      |.++|.|+++.++|+|.+ ++.-|.+.|+++.++.=-. +-=...||..+-|-|..|-
T Consensus         7 L~~LL~d~~~~~~I~Wt~k~~g~Fklv~~~~VA~lWG~~Knk~~MnYeklSRaLRyyY   64 (86)
T d1duxc_           7 LLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYYY   64 (86)
T ss_dssp             HHHHHHHCSSSSSCEEEETTTTEEECTTHHHHHHHHHHTTTCSCCCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCceEeccCCCCEEEecCHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence            456788999999999998 6788999999888874211 1122467888888887763

>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: ETS-1 transcription factor, residues 331-440
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.82  E-value=0.069  Score=44.96  Aligned_cols=61  Identities=23%  Similarity=0.322  Sum_probs=45.7

Q ss_pred             cHHHHHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccc-cccCcCCchhhhhcccccc
Q 015631           13 PFLAKTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLP-KYFKHNNFSSFIRQLNTYG   73 (403)
Q Consensus        13 ~Fl~KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLP-kyFkh~nfsSFvRQLN~YG   73 (403)
                      .--.=|.++|.|+++.++|+|.+.+-.|.+.|+++.++.=-. |-=...||..+-|-|..|-
T Consensus        41 ~LWqFLleLL~d~~~~~~I~Wt~~~~eFkl~d~e~VA~lWG~~Knk~~MnYeKmSRALRyYY  102 (142)
T d1gvja_          41 QLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYY  102 (142)
T ss_dssp             CHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred             eHHHHHHHHHcCCccCCccEEECCCCeEEeCCHHHHHHHHHhhcCCCCccHHHHhHHHHHHh
Confidence            344557788999999999999988888999999988773211 1112467888888887764

>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Serum response factor accessory protein 1a, SAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.59  E-value=0.059  Score=46.04  Aligned_cols=69  Identities=17%  Similarity=0.330  Sum_probs=51.9

Q ss_pred             HHHHhccCCCCCCceEEcCCCCeEEEECCcchhhcccc-cccCcCCchhhhhcccccc----ceeecCCCceec
Q 015631           17 KTYEMVDDSSTDLTVSWSSSNKSFIVWNPPDFARDLLP-KYFKHNNFSSFIRQLNTYG----FRKVDPEQWEFA   85 (403)
Q Consensus        17 KLy~mved~~~~~iI~Ws~~G~sFiI~d~~~F~~~VLP-kyFkh~nfsSFvRQLN~YG----F~Kv~~~~~eF~   85 (403)
                      =|.++|.|+++.++|+|...+.-|.+.|+++.++.=-. |-=...||..+-|-|..|-    .+||...+..|.
T Consensus         9 FL~~LL~d~~~~~~I~Wt~~~geFkl~~~~~VA~lWG~rKnk~~M~YeklSRaLRyYY~k~il~Kv~g~r~~Yk   82 (155)
T d1hbxg_           9 FLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK   82 (155)
T ss_dssp             HTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred             HHHHHHcCccCCCceEEECCCCEEEeCCHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCCEeeccCceeEEE
Confidence            35678999999999999988889999999988874221 1124578999999998874    355555666665