Query 015634
Match_columns 403
No_of_seqs 249 out of 1183
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 16:01:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2crw_A ARF GAP 3, ADP-ribosyla 100.0 2.3E-42 7.8E-47 307.8 14.4 128 1-129 8-136 (149)
2 2p57_A GTPase-activating prote 100.0 2.7E-41 9.4E-46 298.8 10.6 126 1-127 16-142 (144)
3 2owa_A Arfgap-like finger doma 100.0 1.1E-40 3.6E-45 293.9 10.1 117 6-122 20-137 (138)
4 3dwd_A ADP-ribosylation factor 100.0 1.2E-39 4.1E-44 288.6 10.4 115 8-122 24-139 (147)
5 3sub_A ADP-ribosylation factor 100.0 1.8E-38 6.2E-43 284.8 10.0 116 7-123 6-122 (163)
6 2iqj_A Stromal membrane-associ 100.0 1.1E-35 3.6E-40 261.2 5.1 88 6-93 11-98 (134)
7 2crr_A Stromal membrane-associ 100.0 1.9E-35 6.5E-40 261.6 5.7 88 7-94 14-101 (141)
8 2olm_A Nucleoporin-like protei 100.0 1.8E-33 6.2E-38 248.6 7.4 84 9-93 12-95 (140)
9 3o47_A ADP-ribosylation factor 100.0 6.1E-31 2.1E-35 259.6 10.3 112 8-119 23-135 (329)
10 3jue_A Arfgap with coiled-coil 100.0 1.2E-29 4.1E-34 254.7 6.9 84 10-93 33-116 (368)
11 3lju_X ARF-GAP with dual PH do 100.0 3.6E-29 1.2E-33 253.4 6.8 85 8-93 20-104 (386)
12 1dcq_A PYK2-associated protein 99.9 1.1E-26 3.8E-31 222.7 6.5 87 7-93 2-88 (278)
13 2b0o_E UPLC1; arfgap, structur 99.9 1.7E-26 5.7E-31 224.1 7.4 85 9-93 29-113 (301)
14 3lvq_E ARF-GAP with SH3 domain 99.9 1.7E-26 5.9E-31 237.7 5.2 101 8-108 9-123 (497)
15 1gnf_A Transcription factor GA 91.0 0.14 4.7E-06 36.6 2.7 39 20-58 2-41 (46)
16 3dfx_A Trans-acting T-cell-spe 89.6 0.16 5.5E-06 38.6 2.2 40 19-58 4-44 (63)
17 2vut_I AREA, nitrogen regulato 87.4 0.27 9.3E-06 34.6 2.0 36 23-58 2-38 (43)
18 4gat_A Nitrogen regulatory pro 84.1 0.55 1.9E-05 36.0 2.5 39 20-58 7-46 (66)
19 4hc9_A Trans-acting T-cell-spe 81.4 0.6 2E-05 39.4 1.9 37 22-58 5-42 (115)
20 2kae_A GATA-type transcription 77.5 0.71 2.4E-05 35.9 1.0 38 20-58 6-46 (71)
21 1u5k_A Hypothetical protein; O 77.4 1.4 5E-05 40.7 3.4 46 20-81 148-193 (244)
22 4hc9_A Trans-acting T-cell-spe 55.2 6.2 0.00021 33.1 2.4 39 20-58 57-96 (115)
23 1d4u_A Nucleotide excision rep 50.7 3.7 0.00013 34.4 0.3 32 21-52 4-36 (111)
24 3g9m_A Glucocorticoid receptor 46.0 8.3 0.00028 30.8 1.7 30 21-53 1-30 (90)
25 1tjl_A DNAK suppressor protein 44.9 12 0.00041 32.8 2.7 34 19-53 108-143 (151)
26 1ffk_W Ribosomal protein L37AE 43.0 16 0.00054 28.4 2.8 37 13-51 17-54 (73)
27 1hcq_A Protein (estrogen recep 42.1 12 0.00039 29.7 2.0 32 20-54 2-33 (84)
28 2han_B Ecdysone receptor; tran 40.5 12 0.00042 31.4 2.0 31 21-54 7-37 (119)
29 1r4i_A Androgen receptor; AR, 40.3 11 0.00036 31.2 1.5 32 20-54 5-36 (105)
30 2nll_B Protein (thyroid hormon 39.7 11 0.00036 31.0 1.4 29 23-54 2-30 (103)
31 2ebl_A COUP transcription fact 39.1 13 0.00045 29.6 1.9 32 20-54 5-36 (89)
32 2a66_A Orphan nuclear receptor 37.3 11 0.00038 31.5 1.2 34 18-54 5-38 (113)
33 2han_A Protein ultraspiracle; 37.1 14 0.00047 29.8 1.7 31 21-54 9-39 (93)
34 1ynw_B Retinoic acid receptor 34.9 13 0.00046 30.2 1.3 30 22-54 3-32 (99)
35 1dsz_A RAR-alpha, retinoic aci 34.2 15 0.00051 29.1 1.5 29 23-54 5-33 (86)
36 1dl6_A Transcription factor II 33.4 17 0.00057 26.7 1.5 29 23-52 12-40 (58)
37 1a6y_A Orphan nuclear receptor 33.1 16 0.00055 29.4 1.5 32 20-54 5-36 (94)
38 1kb2_A Vitamin D3 receptor; VD 32.7 15 0.00051 30.5 1.3 31 21-54 5-35 (110)
39 3dzy_D Peroxisome proliferator 32.5 20 0.00069 35.9 2.5 32 20-54 48-79 (419)
40 3iz6_N 40S ribosomal protein S 32.1 31 0.001 25.4 2.7 39 20-63 16-54 (56)
41 4hn5_A Glucocorticoid receptor 31.5 18 0.00061 30.4 1.6 39 12-53 19-57 (117)
42 1lo1_A Steroid hormone recepto 30.9 13 0.00043 30.3 0.5 30 22-54 4-33 (98)
43 3j21_g 50S ribosomal protein L 30.1 13 0.00043 27.0 0.4 26 20-51 12-37 (51)
44 1cit_A NGFI-B, protein (orphan 30.0 25 0.00086 28.0 2.1 28 24-54 2-29 (89)
45 2kgo_A Uncharacterized protein 28.8 10 0.00034 31.7 -0.5 32 21-53 55-88 (108)
46 1dsz_B RXR-alpha, retinoic aci 28.0 14 0.00048 29.2 0.3 31 21-54 4-34 (85)
47 3k7a_M Transcription initiatio 27.0 26 0.00088 34.2 2.1 31 23-53 22-53 (345)
48 3cc2_Z 50S ribosomal protein L 23.4 19 0.00064 30.4 0.3 37 13-51 50-87 (116)
49 2uzg_A Ubiquitin carboxyl-term 23.4 27 0.00094 28.0 1.2 27 20-46 23-52 (97)
50 3u5e_g 60S ribosomal protein L 23.0 31 0.0011 29.2 1.5 31 20-50 39-86 (121)
51 3j21_d 50S ribosomal protein L 22.9 35 0.0012 27.4 1.7 30 20-50 31-77 (89)
52 3cbb_A HNF-4-alpha, hepatocyte 22.5 30 0.001 26.8 1.3 28 24-54 2-29 (78)
53 2r2v_A GCN4 leucine zipper; co 21.9 1.1E+02 0.0038 20.3 3.7 22 373-394 3-24 (34)
54 3dzy_A Retinoic acid receptor 21.6 22 0.00074 36.3 0.3 30 21-53 136-165 (467)
55 3j20_P 30S ribosomal protein S 20.3 58 0.002 24.0 2.3 29 20-50 16-44 (56)
No 1
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=2.3e-42 Score=307.82 Aligned_cols=128 Identities=51% Similarity=0.923 Sum_probs=122.6
Q ss_pred CCCcchhHHHHHHHHHHcCCCCCCccCCCCCCCCceeeccccccchhhhhhhccCCCcccceeecCCCC-CCHHHHHHHh
Q 015634 1 MASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMV 79 (403)
Q Consensus 1 m~~~~~~~~~~i~~~L~~~p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~LG~hiS~VkSi~lD~-W~~~ql~~m~ 79 (403)
|+.+..++.+++|+.|+..|+|++|||||+++|+|+|++||||||++|+||||+||+|||+||||+||. |+++||++|+
T Consensus 8 m~~~~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~ 87 (149)
T 2crw_A 8 MGDPSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQ 87 (149)
T ss_dssp SCCCCHHHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHH
Confidence 788888999999999999999999999999999999999999999999999999999999999999996 9999999999
Q ss_pred cCCcHHHHHHHHhcCCCCCCchhhhcccHHHHHHHHHHHHHHHHHHhhcc
Q 015634 80 YGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEA 129 (403)
Q Consensus 80 ~gGN~~a~~~~~~~~~~~~~~i~~KY~~~~a~~Yr~~l~~~v~k~~~~~~ 129 (403)
.+||.++|+||++|+... .+|++||.++++.+||++|.+++++++..++
T Consensus 88 ~~GN~~an~~~e~~~~~~-~~i~~KY~s~~a~~Yr~~l~~~~~~~~~~~~ 136 (149)
T 2crw_A 88 VGGNASASSFFHQHGCST-NDTNAKYNSRAAQLYREKIKSLASQATRKHG 136 (149)
T ss_dssp TTCHHHHHHHHHHHCCCC-CCHHHHTTSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhhHHHHHHHHhcCCCC-cchhhCcCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999998864 7899999999999999999999999987654
No 2
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.7e-41 Score=298.81 Aligned_cols=126 Identities=53% Similarity=0.951 Sum_probs=118.0
Q ss_pred CCCcchhHHHHHHHHHHcCCCCCCccCCCCCCCCceeeccccccchhhhhhhccCCCcccceeecCCCC-CCHHHHHHHh
Q 015634 1 MASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMV 79 (403)
Q Consensus 1 m~~~~~~~~~~i~~~L~~~p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~LG~hiS~VkSi~lD~-W~~~ql~~m~ 79 (403)
|+.++..+.+++|+.|+..|+|++|+|||+++|+|+|++||||||++|+|+||+||+|||+|||++||. |+++||++|+
T Consensus 16 ~~~~~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~ 95 (144)
T 2p57_A 16 SAEPNKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQ 95 (144)
T ss_dssp --CCCHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHH
T ss_pred ccCcCHHHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHH
Confidence 566788899999999999999999999999999999999999999999999999999999999999996 9999999999
Q ss_pred cCCcHHHHHHHHhcCCCCCCchhhhcccHHHHHHHHHHHHHHHHHHhh
Q 015634 80 YGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAE 127 (403)
Q Consensus 80 ~gGN~~a~~~~~~~~~~~~~~i~~KY~~~~a~~Yr~~l~~~v~k~~~~ 127 (403)
.+||.++|+||+++|+.. .+|+.||++++|.+||++|++.+++++..
T Consensus 96 ~~GN~~an~~~e~~g~~~-~~~~~KY~s~aA~~Yr~~l~~~~~~~~~~ 142 (144)
T 2p57_A 96 VGGNANATAFFRQHGCTA-NDANTKYNSRAAQMYREKIRQLGSAALAR 142 (144)
T ss_dssp HCCHHHHHHHHHHTTCCC-CSHHHHHTSHHHHHHHHHHHHHHHHTCC-
T ss_pred HhCHHHHHHHHHHcCCCC-CchhhccCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999876 58999999999999999999999887643
No 3
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.1e-40 Score=293.93 Aligned_cols=117 Identities=42% Similarity=0.789 Sum_probs=112.0
Q ss_pred hhHHHHHHHHHHcCCCCCCccCCCCCCCCceeeccccccchhhhhhhccCCCcccceeecCCCCCCHHHHHHHhcCCcHH
Q 015634 6 LTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNR 85 (403)
Q Consensus 6 ~~~~~~i~~~L~~~p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~LG~hiS~VkSi~lD~W~~~ql~~m~~gGN~~ 85 (403)
..+++++++.|++.|+|++|+|||+++|+|+|++||||||++|+|+||+||+|||+|||++||.|+++||++|+.+||.+
T Consensus 20 ~~~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~ 99 (138)
T 2owa_A 20 DKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGR 99 (138)
T ss_dssp HHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-cCCCCCCchhhhcccHHHHHHHHHHHHHHH
Q 015634 86 AQVFFKQ-HGWTDGGKIEAKYTSRAAELYKQILAKEVA 122 (403)
Q Consensus 86 a~~~~~~-~~~~~~~~i~~KY~~~~a~~Yr~~l~~~v~ 122 (403)
+|+||++ +|+.+...+++||+++++.+|+++|.++|+
T Consensus 100 an~~~e~~~~~~~~~~~~~kY~s~~a~~Y~~kL~~~~~ 137 (138)
T 2owa_A 100 ARNYFKQVLGVNFSPKTKEYASSICGRQYKQILDSEIS 137 (138)
T ss_dssp HHHHHHHHTCTTCCGGGCHHHHSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCCHHHHHhhHHHHHHHHHHHHHHh
Confidence 9999999 888777789999999999999999998764
No 4
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=288.56 Aligned_cols=115 Identities=39% Similarity=0.824 Sum_probs=106.4
Q ss_pred HHHHHHHHHHcCCCCCCccCCCCCCCCceeeccccccchhhhhhhccCCCcccceeecCCCCCCHHHHHHHhcCCcHHHH
Q 015634 8 DKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQ 87 (403)
Q Consensus 8 ~~~~i~~~L~~~p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~LG~hiS~VkSi~lD~W~~~ql~~m~~gGN~~a~ 87 (403)
+.+++|+.|++.|+|++||||++++|+|+|++||||||++|+|+||+||+|||+||||+||.|+++||++|+.+||.++|
T Consensus 24 ~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~~an 103 (147)
T 3dwd_A 24 RTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFR 103 (147)
T ss_dssp HHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC-CCCCCchhhhcccHHHHHHHHHHHHHHH
Q 015634 88 VFFKQHG-WTDGGKIEAKYTSRAAELYKQILAKEVA 122 (403)
Q Consensus 88 ~~~~~~~-~~~~~~i~~KY~~~~a~~Yr~~l~~~v~ 122 (403)
+||++++ +.+...|++||.+++|.+||++|+.+++
T Consensus 104 ~~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~e 139 (147)
T 3dwd_A 104 EFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAE 139 (147)
T ss_dssp HHHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHc
Confidence 9999986 3445789999999999999999998764
No 5
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.8e-38 Score=284.83 Aligned_cols=116 Identities=46% Similarity=0.801 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHcC-CCCCCccCCCCCCCCceeeccccccchhhhhhhccCCCcccceeecCCCCCCHHHHHHHhcCCcHH
Q 015634 7 TDKNLVFRKLKAK-SENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNR 85 (403)
Q Consensus 7 ~~~~~i~~~L~~~-p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~LG~hiS~VkSi~lD~W~~~ql~~m~~gGN~~ 85 (403)
+...++|+.|++. |+|++|+|||+++|+|+|++||||||++|+|+||+||+|||+||||+||.|+++||++|+.+||.+
T Consensus 6 a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN~~ 85 (163)
T 3sub_A 6 AAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGNKK 85 (163)
T ss_dssp HHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCHHH
Confidence 3456788999875 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCchhhhcccHHHHHHHHHHHHHHHH
Q 015634 86 AQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAK 123 (403)
Q Consensus 86 a~~~~~~~~~~~~~~i~~KY~~~~a~~Yr~~l~~~v~k 123 (403)
+++||++||+.. ..++.||.+++|.+||++|++.|..
T Consensus 86 an~~~e~~g~~~-~~p~~KY~s~aA~~Yr~~L~~~v~~ 122 (163)
T 3sub_A 86 CQTYLENYGISD-FIPERKYRTKAADHYRKILRSIVHN 122 (163)
T ss_dssp HHHHHHHTTCTT-SCHHHHTTBHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCcc-cChhhcCCCHHHHHHHHHHHHHHcC
Confidence 999999999875 4567899999999999999988754
No 6
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=261.16 Aligned_cols=88 Identities=42% Similarity=0.836 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHcCCCCCCccCCCCCCCCceeeccccccchhhhhhhccCCCcccceeecCCCCCCHHHHHHHhcCCcHH
Q 015634 6 LTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNR 85 (403)
Q Consensus 6 ~~~~~~i~~~L~~~p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~LG~hiS~VkSi~lD~W~~~ql~~m~~gGN~~ 85 (403)
.+..+++|+.|++.|+|++|+|||+++|+|+|++||||||++|+|+||+||+|||+||||+||.|+++||++|+.+||..
T Consensus 11 ~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~ 90 (134)
T 2iqj_A 11 VDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGK 90 (134)
T ss_dssp --CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHchHH
Confidence 34447899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 015634 86 AQVFFKQH 93 (403)
Q Consensus 86 a~~~~~~~ 93 (403)
+|+||+++
T Consensus 91 an~~~e~~ 98 (134)
T 2iqj_A 91 ANRLYEAY 98 (134)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHhc
Confidence 99999976
No 7
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.9e-35 Score=261.55 Aligned_cols=88 Identities=45% Similarity=0.898 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHcCCCCCCccCCCCCCCCceeeccccccchhhhhhhccCCCcccceeecCCCCCCHHHHHHHhcCCcHHH
Q 015634 7 TDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRA 86 (403)
Q Consensus 7 ~~~~~i~~~L~~~p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~LG~hiS~VkSi~lD~W~~~ql~~m~~gGN~~a 86 (403)
+..+++|+.|+..|+|++|+|||+++|+|+|++||||||++|+|+||+||+|||+||||+||.|+++||++|+.+||..+
T Consensus 14 e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~a 93 (141)
T 2crr_A 14 EQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKA 93 (141)
T ss_dssp TCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHHccHHH
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 015634 87 QVFFKQHG 94 (403)
Q Consensus 87 ~~~~~~~~ 94 (403)
|+||+++.
T Consensus 94 n~~~e~~l 101 (141)
T 2crr_A 94 RLLYEANL 101 (141)
T ss_dssp HHHGGGSC
T ss_pred HHHHHhcC
Confidence 99999873
No 8
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=99.98 E-value=1.8e-33 Score=248.61 Aligned_cols=84 Identities=24% Similarity=0.568 Sum_probs=81.3
Q ss_pred HHHHHHHHHcCCCCCCccCCCCCCCCceeeccccccchhhhhhhccCCCcccceeecCCCCCCHHHHHHHhcCCcHHHHH
Q 015634 9 KNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQV 88 (403)
Q Consensus 9 ~~~i~~~L~~~p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~LG~hiS~VkSi~lD~W~~~ql~~m~~gGN~~a~~ 88 (403)
..++|+.|++.|+|++|+|||+++|+|+|++||||||++|+||||+||+| |+||||+||.|+++||++|+.+||..+|+
T Consensus 12 ~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~~GN~~an~ 90 (140)
T 2olm_A 12 HLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHGNEVCKQ 90 (140)
T ss_dssp HHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHHhccHHHHH
Confidence 46799999999999999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred HHHhc
Q 015634 89 FFKQH 93 (403)
Q Consensus 89 ~~~~~ 93 (403)
||+.+
T Consensus 91 ~~e~~ 95 (140)
T 2olm_A 91 IWLGL 95 (140)
T ss_dssp HHTTT
T ss_pred HHHhh
Confidence 99976
No 9
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.97 E-value=6.1e-31 Score=259.61 Aligned_cols=112 Identities=40% Similarity=0.827 Sum_probs=104.6
Q ss_pred HHHHHHHHHHcCCCCCCccCCCCCCCCceeeccccccchhhhhhhccCCCcccceeecCCCCCCHHHHHHHhcCCcHHHH
Q 015634 8 DKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQ 87 (403)
Q Consensus 8 ~~~~i~~~L~~~p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~LG~hiS~VkSi~lD~W~~~ql~~m~~gGN~~a~ 87 (403)
..+++++.|++.|+|+.|+|||+++|+|+|++||||||++|+|+||+||+|||+|||++||.|++++|++|+.+||.++|
T Consensus 23 ~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~~~n 102 (329)
T 3o47_A 23 RTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFR 102 (329)
T ss_dssp CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC-CCCCchhhhcccHHHHHHHHHHHH
Q 015634 88 VFFKQHGW-TDGGKIEAKYTSRAAELYKQILAK 119 (403)
Q Consensus 88 ~~~~~~~~-~~~~~i~~KY~~~~a~~Yr~~l~~ 119 (403)
+||++++. .+...+..+|.++++.+|+..+..
T Consensus 103 ~~~e~~~~~~~~~~i~~~y~s~~A~lYr~kl~~ 135 (329)
T 3o47_A 103 EFLESQEDYDPCWSLQEKYNSRAAALFRDKVVA 135 (329)
T ss_dssp HHHHTCSSCCTTCCHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCCccccccchHHHHHhhhccc
Confidence 99999854 335679999999999999998875
No 10
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.95 E-value=1.2e-29 Score=254.70 Aligned_cols=84 Identities=42% Similarity=0.777 Sum_probs=82.1
Q ss_pred HHHHHHHHcCCCCCCccCCCCCCCCceeeccccccchhhhhhhccCCCcccceeecCCCCCCHHHHHHHhcCCcHHHHHH
Q 015634 10 NLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVF 89 (403)
Q Consensus 10 ~~i~~~L~~~p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~LG~hiS~VkSi~lD~W~~~ql~~m~~gGN~~a~~~ 89 (403)
+++++.|++.|+|++|+||++++|+|+|++||||||++|+||||+||+|||+||||+||.|++++|++|+.+||..+|+|
T Consensus 33 ~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~gn~~~n~~ 112 (368)
T 3jue_A 33 GHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQI 112 (368)
T ss_dssp CCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHHccHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 015634 90 FKQH 93 (403)
Q Consensus 90 ~~~~ 93 (403)
|+.+
T Consensus 113 ~e~~ 116 (368)
T 3jue_A 113 YEAR 116 (368)
T ss_dssp HTTT
T ss_pred HHhh
Confidence 9976
No 11
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.95 E-value=3.6e-29 Score=253.42 Aligned_cols=85 Identities=35% Similarity=0.770 Sum_probs=82.2
Q ss_pred HHHHHHHHHHcCCCCCCccCCCCCCCCceeeccccccchhhhhhhccCCCcccceeecCCCCCCHHHHHHHhcCCcHHHH
Q 015634 8 DKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQ 87 (403)
Q Consensus 8 ~~~~i~~~L~~~p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~LG~hiS~VkSi~lD~W~~~ql~~m~~gGN~~a~ 87 (403)
+..++|+.|+..|+|+.|+|||+++|+|||++||||||++|+|+||+| +|||+||||+||.|++++|++|+.+||..+|
T Consensus 20 ~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~~gN~~~~ 98 (386)
T 3lju_X 20 ERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASHGNDAAR 98 (386)
T ss_dssp HHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHHhcchHHH
Confidence 345799999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHhc
Q 015634 88 VFFKQH 93 (403)
Q Consensus 88 ~~~~~~ 93 (403)
+||+++
T Consensus 99 ~~~e~~ 104 (386)
T 3lju_X 99 ARFESK 104 (386)
T ss_dssp HHHTTT
T ss_pred HHHhcc
Confidence 999987
No 12
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.93 E-value=1.1e-26 Score=222.67 Aligned_cols=87 Identities=32% Similarity=0.601 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHcCCCCCCccCCCCCCCCceeeccccccchhhhhhhccCCCcccceeecCCCCCCHHHHHHHhcCCcHHH
Q 015634 7 TDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRA 86 (403)
Q Consensus 7 ~~~~~i~~~L~~~p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~LG~hiS~VkSi~lD~W~~~ql~~m~~gGN~~a 86 (403)
+.++++++.|++.|+|+.|+|||+++|+|+|++||||||++|+|+||+||+|||+|||++||.|++.+|.+|..+||..+
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 015634 87 QVFFKQH 93 (403)
Q Consensus 87 ~~~~~~~ 93 (403)
|+||+.+
T Consensus 82 n~i~e~~ 88 (278)
T 1dcq_A 82 NEIMECC 88 (278)
T ss_dssp HHHHTTT
T ss_pred HHHHHhh
Confidence 9999975
No 13
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.93 E-value=1.7e-26 Score=224.11 Aligned_cols=85 Identities=34% Similarity=0.674 Sum_probs=82.2
Q ss_pred HHHHHHHHHcCCCCCCccCCCCCCCCceeeccccccchhhhhhhccCCCcccceeecCCCCCCHHHHHHHhcCCcHHHHH
Q 015634 9 KNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQV 88 (403)
Q Consensus 9 ~~~i~~~L~~~p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~LG~hiS~VkSi~lD~W~~~ql~~m~~gGN~~a~~ 88 (403)
.+++|+.|++.|+|+.|+|||+++|+|+|++||||||++|+|+||+||+|||+|||++||.|++.+|.+|..+||..+|+
T Consensus 29 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN~~~n~ 108 (301)
T 2b0o_E 29 TKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNE 108 (301)
T ss_dssp HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCCHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q 015634 89 FFKQH 93 (403)
Q Consensus 89 ~~~~~ 93 (403)
+|+..
T Consensus 109 i~E~~ 113 (301)
T 2b0o_E 109 VMEAQ 113 (301)
T ss_dssp HHTTT
T ss_pred HHHHh
Confidence 99865
No 14
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.92 E-value=1.7e-26 Score=237.69 Aligned_cols=101 Identities=33% Similarity=0.570 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCCCCCCccCCCCCCCCceeeccccccchhhhhhhccCCCcccceeecCCCCCCHHHHHHHhcCCcHHHH
Q 015634 8 DKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQ 87 (403)
Q Consensus 8 ~~~~i~~~L~~~p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~LG~hiS~VkSi~lD~W~~~ql~~m~~gGN~~a~ 87 (403)
..+++++.|++.|+|+.|+|||+++|+|+|+|+|||||++|||+||+||+|||+|||++||.|+++++++|+.+||..+|
T Consensus 9 ~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN~~an 88 (497)
T 3lvq_E 9 LTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFN 88 (497)
T ss_dssp HHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCHHHHH
T ss_pred HHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHhhHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCC-----C---------CCchhhhcccH
Q 015634 88 VFFKQHGWT-----D---------GGKIEAKYTSR 108 (403)
Q Consensus 88 ~~~~~~~~~-----~---------~~~i~~KY~~~ 108 (403)
.+|+..-.. + ..+|+.||..+
T Consensus 89 ~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~ 123 (497)
T 3lvq_E 89 EVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEH 123 (497)
T ss_dssp HHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhcc
Confidence 999975321 1 13678888765
No 15
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=90.95 E-value=0.14 Score=36.60 Aligned_cols=39 Identities=33% Similarity=0.777 Sum_probs=33.7
Q ss_pred CCCCCccCCCCCC-CCceeeccccccchhhhhhhccCCCc
Q 015634 20 SENKMCFDCNAKN-PTWASVTYGIFLCIDCSAVHRSLGVH 58 (403)
Q Consensus 20 p~Nk~C~DCga~n-P~WaSv~~GiflC~~CsgiHR~LG~h 58 (403)
...+.|+.|+... |.|-.-+.|..||-.|.-.++..|++
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 41 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSC
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCC
Confidence 3578999999865 89999999999999999988877765
No 16
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=89.62 E-value=0.16 Score=38.65 Aligned_cols=40 Identities=15% Similarity=0.464 Sum_probs=34.1
Q ss_pred CCCCCCccCCCCCC-CCceeeccccccchhhhhhhccCCCc
Q 015634 19 KSENKMCFDCNAKN-PTWASVTYGIFLCIDCSAVHRSLGVH 58 (403)
Q Consensus 19 ~p~Nk~C~DCga~n-P~WaSv~~GiflC~~CsgiHR~LG~h 58 (403)
......|++|+... |.|-.-+.|-.||-.|.-.++..|++
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~~ 44 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN 44 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSSC
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCCC
Confidence 45788999999865 89999999999999999888776653
No 17
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=87.36 E-value=0.27 Score=34.57 Aligned_cols=36 Identities=28% Similarity=0.610 Sum_probs=30.6
Q ss_pred CCccCCCCCC-CCceeeccccccchhhhhhhccCCCc
Q 015634 23 KMCFDCNAKN-PTWASVTYGIFLCIDCSAVHRSLGVH 58 (403)
Q Consensus 23 k~C~DCga~n-P~WaSv~~GiflC~~CsgiHR~LG~h 58 (403)
+.|++|+... |.|-.-..|-.||-.|.-..+.-|++
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~ 38 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVV 38 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSSC
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCCC
Confidence 5799999865 79999999999999999877766653
No 18
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=84.13 E-value=0.55 Score=35.97 Aligned_cols=39 Identities=26% Similarity=0.556 Sum_probs=33.0
Q ss_pred CCCCCccCCCCCC-CCceeeccccccchhhhhhhccCCCc
Q 015634 20 SENKMCFDCNAKN-PTWASVTYGIFLCIDCSAVHRSLGVH 58 (403)
Q Consensus 20 p~Nk~C~DCga~n-P~WaSv~~GiflC~~CsgiHR~LG~h 58 (403)
.....|+.|+... |.|-.-+.|-.||-.|.-.++..|++
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~~ 46 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVV 46 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCCC
Confidence 4678999999865 89999999999999999877766654
No 19
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=81.42 E-value=0.6 Score=39.39 Aligned_cols=37 Identities=30% Similarity=0.776 Sum_probs=30.5
Q ss_pred CCCccCCCCCC-CCceeeccccccchhhhhhhccCCCc
Q 015634 22 NKMCFDCNAKN-PTWASVTYGIFLCIDCSAVHRSLGVH 58 (403)
Q Consensus 22 Nk~C~DCga~n-P~WaSv~~GiflC~~CsgiHR~LG~h 58 (403)
-++|.+|++.. |.|-.-..|-+||-.|.-.++..|++
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~n 42 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQN 42 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccc
Confidence 57899999865 99999999999999999877655544
No 20
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=77.47 E-value=0.71 Score=35.86 Aligned_cols=38 Identities=18% Similarity=0.492 Sum_probs=30.4
Q ss_pred CCCCCccCCCCCC-CCcee--eccccccchhhhhhhccCCCc
Q 015634 20 SENKMCFDCNAKN-PTWAS--VTYGIFLCIDCSAVHRSLGVH 58 (403)
Q Consensus 20 p~Nk~C~DCga~n-P~WaS--v~~GiflC~~CsgiHR~LG~h 58 (403)
.....|+.|+... |.|-. -.-| .||-.|.-.++..|++
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~ 46 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKT 46 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSC
T ss_pred CCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCC
Confidence 4567999999865 89998 6778 8999999988877664
No 21
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=77.41 E-value=1.4 Score=40.73 Aligned_cols=46 Identities=22% Similarity=0.517 Sum_probs=35.3
Q ss_pred CCCCCccCCCCCCCCceeeccccccchhhhhhhccCCCcccceeecCCCCCCHHHHHHHhcC
Q 015634 20 SENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYG 81 (403)
Q Consensus 20 p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~LG~hiS~VkSi~lD~W~~~ql~~m~~g 81 (403)
|.-..|+.||.+...|.++..|.++|..|...+ .++.+.+..|+..
T Consensus 148 p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l 193 (244)
T 1u5k_A 148 PQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHA 193 (244)
T ss_dssp CCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHT
T ss_pred CCcCccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHH
Confidence 566799999998667889999999999996432 3567777777543
No 22
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=55.21 E-value=6.2 Score=33.12 Aligned_cols=39 Identities=15% Similarity=0.453 Sum_probs=33.1
Q ss_pred CCCCCccCCCCCC-CCceeeccccccchhhhhhhccCCCc
Q 015634 20 SENKMCFDCNAKN-PTWASVTYGIFLCIDCSAVHRSLGVH 58 (403)
Q Consensus 20 p~Nk~C~DCga~n-P~WaSv~~GiflC~~CsgiHR~LG~h 58 (403)
.....|+.|+... |.|-.-+.|-.||-.|.-.++..|++
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~~ 96 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN 96 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCCC
Confidence 4568999999865 99999999999999999887776654
No 23
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=50.66 E-value=3.7 Score=34.41 Aligned_cols=32 Identities=16% Similarity=0.467 Sum_probs=24.3
Q ss_pred CCCCccCCCCCCCC-ceeeccccccchhhhhhh
Q 015634 21 ENKMCFDCNAKNPT-WASVTYGIFLCIDCSAVH 52 (403)
Q Consensus 21 ~Nk~C~DCga~nP~-WaSv~~GiflC~~CsgiH 52 (403)
..-.|.+||...-. |..-+|++-||..|....
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~ 36 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDAD 36 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhcccc
Confidence 45679999986433 335689999999999753
No 24
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=45.95 E-value=8.3 Score=30.77 Aligned_cols=30 Identities=23% Similarity=0.776 Sum_probs=24.3
Q ss_pred CCCCccCCCCCCCCceeeccccccchhhhhhhc
Q 015634 21 ENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHR 53 (403)
Q Consensus 21 ~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR 53 (403)
+++.|.-|+.+. ....||++.|..|.++.|
T Consensus 1 g~~~C~VCg~~a---~g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEA---SGCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBC---CEEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcC---cccccCCccchhHhHHhh
Confidence 478899999754 356899999999999776
No 25
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=44.92 E-value=12 Score=32.75 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=23.5
Q ss_pred CCCCCCccCCCCCCC--Cceeeccccccchhhhhhhc
Q 015634 19 KSENKMCFDCNAKNP--TWASVTYGIFLCIDCSAVHR 53 (403)
Q Consensus 19 ~p~Nk~C~DCga~nP--~WaSv~~GiflC~~CsgiHR 53 (403)
...-.+|.+||.+=| .+.-+ =++-+|+.|...|-
T Consensus 108 ~g~yg~C~~Cg~~Ip~~Rl~a~-P~a~~Ci~Cq~~~E 143 (151)
T 1tjl_A 108 DEDFGYCESCGVEIGIRRLEAR-PTADLCIDCKTLAE 143 (151)
T ss_dssp TTCCSBCSSSSCBCCHHHHHHC-TTCCSCHHHHHHHH
T ss_pred CCCCceeCCCCCcchHHHHhcC-CCcchhHHHHHHHH
Confidence 356679999998755 22222 26779999998763
No 26
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=43.02 E-value=16 Score=28.37 Aligned_cols=37 Identities=22% Similarity=0.384 Sum_probs=29.0
Q ss_pred HHHH-HcCCCCCCccCCCCCCCCceeeccccccchhhhhh
Q 015634 13 FRKL-KAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAV 51 (403)
Q Consensus 13 ~~~L-~~~p~Nk~C~DCga~nP~WaSv~~GiflC~~Csgi 51 (403)
+++| ........|.-||.....+.. .||+.|..|.-.
T Consensus 17 vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~~ 54 (73)
T 1ffk_W 17 VRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGYK 54 (73)
T ss_pred HHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCcE
Confidence 4444 678889999999987776665 499999999753
No 27
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=42.11 E-value=12 Score=29.66 Aligned_cols=32 Identities=28% Similarity=0.730 Sum_probs=26.1
Q ss_pred CCCCCccCCCCCCCCceeeccccccchhhhhhhcc
Q 015634 20 SENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (403)
Q Consensus 20 p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~ 54 (403)
++...|.-|+.+. ....||++.|..|.+..|-
T Consensus 2 ~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 2 KETRYCAVCNDYA---SGYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCCcCcEECCCC---CCeeeCccchHHhhhhhhh
Confidence 3567899999754 3678999999999998873
No 28
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=40.51 E-value=12 Score=31.39 Aligned_cols=31 Identities=19% Similarity=0.698 Sum_probs=25.8
Q ss_pred CCCCccCCCCCCCCceeeccccccchhhhhhhcc
Q 015634 21 ENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (403)
Q Consensus 21 ~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~ 54 (403)
.+..|.-||.+. ....||++.|..|.++.|-
T Consensus 7 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 7 QEELCLVCGDRA---SGYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CSCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCcCeEeCCcC---CcceECchhHHhhHHhhhh
Confidence 467899999754 3679999999999998873
No 29
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=40.26 E-value=11 Score=31.17 Aligned_cols=32 Identities=22% Similarity=0.653 Sum_probs=25.8
Q ss_pred CCCCCccCCCCCCCCceeeccccccchhhhhhhcc
Q 015634 20 SENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (403)
Q Consensus 20 p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~ 54 (403)
+.+..|.-||.+. ....||++.|..|.++.|-
T Consensus 5 ~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 5 PPQKTCLICGDEA---SGAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp -CCCBCSSSCSBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCcEeCCCC---CceEeCCcchhhhhhhhce
Confidence 5678899999643 3678999999999998873
No 30
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=39.69 E-value=11 Score=31.03 Aligned_cols=29 Identities=24% Similarity=0.663 Sum_probs=23.6
Q ss_pred CCccCCCCCCCCceeeccccccchhhhhhhcc
Q 015634 23 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (403)
Q Consensus 23 k~C~DCga~nP~WaSv~~GiflC~~CsgiHR~ 54 (403)
..|.-||.+. ....||++.|..|.++.|-
T Consensus 2 ~~C~VCgd~a---~g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKA---TGYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBC---CSEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcC---cCeecCcccHHHhhhhhee
Confidence 5789999754 3568999999999998873
No 31
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=39.07 E-value=13 Score=29.65 Aligned_cols=32 Identities=28% Similarity=0.669 Sum_probs=26.2
Q ss_pred CCCCCccCCCCCCCCceeeccccccchhhhhhhcc
Q 015634 20 SENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (403)
Q Consensus 20 p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~ 54 (403)
+.+..|.-|+.+.- ...||++.|..|.++.|-
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 45678999997543 568999999999998873
No 32
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=37.33 E-value=11 Score=31.47 Aligned_cols=34 Identities=21% Similarity=0.616 Sum_probs=24.4
Q ss_pred cCCCCCCccCCCCCCCCceeeccccccchhhhhhhcc
Q 015634 18 AKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (403)
Q Consensus 18 ~~p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~ 54 (403)
+.+.+..|.-||.+. ....|||+.|..|.++.|-
T Consensus 5 ~~~~~~~C~VCgd~a---~G~HyGv~sC~aCk~FFRR 38 (113)
T 2a66_A 5 DEDLEELCPVCGDKV---SGYHYGLLTCESCKGFFKR 38 (113)
T ss_dssp -----CBCTTTCCBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCCcEeCCCC---cceeeCcccHHHHHHHHhh
Confidence 345678899999653 3678999999999998873
No 33
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=37.14 E-value=14 Score=29.78 Aligned_cols=31 Identities=19% Similarity=0.718 Sum_probs=25.1
Q ss_pred CCCCccCCCCCCCCceeeccccccchhhhhhhcc
Q 015634 21 ENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (403)
Q Consensus 21 ~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~ 54 (403)
....|.-||.+. ....||++.|..|.+..|-
T Consensus 9 ~~~~C~VCgd~a---~g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 9 SKHLCSICGDRA---SGKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp -CCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCCCcEeCCCC---cCeecCcchhHHHHHHHHh
Confidence 457899999754 3679999999999998873
No 34
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=34.91 E-value=13 Score=30.21 Aligned_cols=30 Identities=20% Similarity=0.748 Sum_probs=23.3
Q ss_pred CCCccCCCCCCCCceeeccccccchhhhhhhcc
Q 015634 22 NKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (403)
Q Consensus 22 Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~ 54 (403)
...|.-||.+.- ...||++.|..|.++.|-
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (99)
T 1ynw_B 3 KHICAICGDRSS---GKHYGVYSCEGCKGFFKR 32 (99)
T ss_dssp --CBTTTBSCCC---BCCTTSCBCSHHHHHHHH
T ss_pred CCCCceeCCCCc---ceeeCccchHHHHHHHHh
Confidence 457999997543 568999999999998874
No 35
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=34.20 E-value=15 Score=29.08 Aligned_cols=29 Identities=34% Similarity=0.813 Sum_probs=23.2
Q ss_pred CCccCCCCCCCCceeeccccccchhhhhhhcc
Q 015634 23 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (403)
Q Consensus 23 k~C~DCga~nP~WaSv~~GiflC~~CsgiHR~ 54 (403)
+.|.-||.+.- ...||++.|..|.+..|-
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (86)
T 1dsz_A 5 KPCFVCQDKSS---GYHYGVSACEGCKGFFRR 33 (86)
T ss_dssp -CCTTTCSCCC---SEETTEECCHHHHHHHHH
T ss_pred CCCcEECCCcc---ceeeCchhHHHHHHHHHH
Confidence 56999997543 568999999999998873
No 36
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=33.40 E-value=17 Score=26.67 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=21.0
Q ss_pred CCccCCCCCCCCceeeccccccchhhhhhh
Q 015634 23 KMCFDCNAKNPTWASVTYGIFLCIDCSAVH 52 (403)
Q Consensus 23 k~C~DCga~nP~WaSv~~GiflC~~CsgiH 52 (403)
..|-+|+..+..+ ...-|..+|..|.-+-
T Consensus 12 ~~Cp~C~~~~lv~-D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 12 VTCPNHPDAILVE-DYRAGDMICPECGLVV 40 (58)
T ss_dssp CSBTTBSSSCCEE-CSSSCCEECTTTCCEE
T ss_pred ccCcCCCCCceeE-eCCCCeEEeCCCCCEE
Confidence 4799999866322 3356999999996653
No 37
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=33.07 E-value=16 Score=29.41 Aligned_cols=32 Identities=22% Similarity=0.593 Sum_probs=24.2
Q ss_pred CCCCCccCCCCCCCCceeeccccccchhhhhhhcc
Q 015634 20 SENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (403)
Q Consensus 20 p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~ 54 (403)
.....|.-||.+. ....||++.|..|.+..|-
T Consensus 5 ~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (94)
T 1a6y_A 5 GMVLLCKVCGDVA---SGFHYGVLACEGCKGFFRR 36 (94)
T ss_dssp ---CBCTTTSSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCCcCcEeCCCC---cceEeCccchhhhhhehhe
Confidence 3456799999754 3678999999999998873
No 38
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=32.72 E-value=15 Score=30.49 Aligned_cols=31 Identities=16% Similarity=0.545 Sum_probs=24.1
Q ss_pred CCCCccCCCCCCCCceeeccccccchhhhhhhcc
Q 015634 21 ENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (403)
Q Consensus 21 ~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~ 54 (403)
....|.-||.+.- ...||++.|..|.++.|-
T Consensus 5 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (110)
T 1kb2_A 5 VPRICGVCGDRAT---GFHFNAMTCEGCKGFFRR 35 (110)
T ss_dssp --CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred cCCCCcEeCCCCC---ceEeCchhHhhhhhhhee
Confidence 3467999997543 568999999999998873
No 39
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=32.47 E-value=20 Score=35.90 Aligned_cols=32 Identities=25% Similarity=0.544 Sum_probs=25.0
Q ss_pred CCCCCccCCCCCCCCceeeccccccchhhhhhhcc
Q 015634 20 SENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (403)
Q Consensus 20 p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~ 54 (403)
..+..|.-||.+.-. ..|||+.|..|.++.|-
T Consensus 48 ~~~~~C~vC~~~~~g---~hygv~~C~~C~~FFrR 79 (419)
T 3dzy_D 48 LMAIECRVCGDKASG---FHYGVHACEGCKGFFRR 79 (419)
T ss_dssp --CCCCSSSCSCCCS---BCSSSBCCHHHHHHHHH
T ss_pred CCCCcCeECCCcCCC---CccCcccchhhhHHHcc
Confidence 346789999986543 58999999999998763
No 40
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=32.12 E-value=31 Score=25.41 Aligned_cols=39 Identities=26% Similarity=0.620 Sum_probs=27.9
Q ss_pred CCCCCccCCCCCCCCceeeccccccchhhhhhhccCCCccccee
Q 015634 20 SENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVR 63 (403)
Q Consensus 20 p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~LG~hiS~Vk 63 (403)
++-+.|.-||.+.--. =.||+.+|-.|- |.+...|-|||
T Consensus 16 ~g~~rC~vcGr~~g~i--RkfGL~~cR~cf---Re~A~~iGF~k 54 (56)
T 3iz6_N 16 AGSRVCRVCGNSHGLI--RKYGLMCCRQCF---RSDAKDIGFIK 54 (56)
T ss_dssp CCCCCCSSCCCSCCCT--TTTSCTTHHHHH---HTTCCSTTCCS
T ss_pred CCcceeecCCCCcccc--cccCCcHHHHHH---HHHHHhcCcee
Confidence 5678999999865322 379999999886 45555666665
No 41
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=31.47 E-value=18 Score=30.42 Aligned_cols=39 Identities=21% Similarity=0.649 Sum_probs=23.9
Q ss_pred HHHHHHcCCCCCCccCCCCCCCCceeeccccccchhhhhhhc
Q 015634 12 VFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHR 53 (403)
Q Consensus 12 i~~~L~~~p~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR 53 (403)
.|.........+.|.-||.+.- ...||++.|..|.++-|
T Consensus 19 ~~~s~~~~~~~~~C~VCgd~a~---G~HyGv~sC~aCk~FFR 57 (117)
T 4hn5_A 19 YFQSNASNAPPKLCLVCSDEAS---GCHYGVLTCGSCKVFFK 57 (117)
T ss_dssp -----------CBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred eeccCCCCCCCCcCCcCCCcCc---ccccCCcccchhhhhhh
Confidence 3444445566788999997643 56899999999999776
No 42
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=30.89 E-value=13 Score=30.31 Aligned_cols=30 Identities=23% Similarity=0.714 Sum_probs=24.6
Q ss_pred CCCccCCCCCCCCceeeccccccchhhhhhhcc
Q 015634 22 NKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (403)
Q Consensus 22 Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~ 54 (403)
...|.-||.+. ....||++.|..|.++.|-
T Consensus 4 ~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 33 (98)
T 1lo1_A 4 KRLCLVCGDIA---SGYHYGVASCEACKAFFKR 33 (98)
T ss_dssp CCEETTTTEEC---SEESSSSEECHHHHHHHHH
T ss_pred CCCCcEeCCCC---cCeeeCccchhhhhhhhee
Confidence 46799999754 3678999999999998874
No 43
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.13 E-value=13 Score=26.97 Aligned_cols=26 Identities=23% Similarity=0.594 Sum_probs=21.2
Q ss_pred CCCCCccCCCCCCCCceeeccccccchhhhhh
Q 015634 20 SENKMCFDCNAKNPTWASVTYGIFLCIDCSAV 51 (403)
Q Consensus 20 p~Nk~C~DCga~nP~WaSv~~GiflC~~Csgi 51 (403)
-..++|..|++. +..|+.-|..|...
T Consensus 12 ~~k~iCpkC~a~------~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 12 FKKYVCLRCGAT------NPWGAKKCRKCGYK 37 (51)
T ss_dssp SSEEECTTTCCE------ECTTCSSCSSSSSC
T ss_pred hCCccCCCCCCc------CCCCceecCCCCCc
Confidence 466899999998 44799999999654
No 44
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=29.98 E-value=25 Score=27.98 Aligned_cols=28 Identities=21% Similarity=0.618 Sum_probs=22.7
Q ss_pred CccCCCCCCCCceeeccccccchhhhhhhcc
Q 015634 24 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (403)
Q Consensus 24 ~C~DCga~nP~WaSv~~GiflC~~CsgiHR~ 54 (403)
.|.-||.+.- ...||++.|..|.+..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFKR 29 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhcee
Confidence 5888886532 578999999999998874
No 45
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=28.79 E-value=10 Score=31.66 Aligned_cols=32 Identities=28% Similarity=0.626 Sum_probs=22.1
Q ss_pred CCCCccCCCCCCC--Cceeeccccccchhhhhhhc
Q 015634 21 ENKMCFDCNAKNP--TWASVTYGIFLCIDCSAVHR 53 (403)
Q Consensus 21 ~Nk~C~DCga~nP--~WaSv~~GiflC~~CsgiHR 53 (403)
.-.+|.+||.+=| .+.-+ =++-+|++|...+-
T Consensus 55 syG~C~~CGe~Ip~~RL~A~-P~a~~Cv~Cq~~~E 88 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAI-PGVRLCIHCQQEKD 88 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHS-TTCCSCHHHHHHHH
T ss_pred cCceecccCCcccHHHHhcC-CCccccHHHHHHHH
Confidence 3579999998755 22222 25778999998653
No 46
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=28.04 E-value=14 Score=29.21 Aligned_cols=31 Identities=19% Similarity=0.723 Sum_probs=24.9
Q ss_pred CCCCccCCCCCCCCceeeccccccchhhhhhhcc
Q 015634 21 ENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (403)
Q Consensus 21 ~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR~ 54 (403)
.+..|.-||.+.- ...||++.|..|.+..|-
T Consensus 4 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 34 (85)
T 1dsz_B 4 TKHICAICGDRSS---GKHYGVYSCEGCKGFFKR 34 (85)
T ss_dssp CCEECTTTCCEES---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCEeCCCCC---ceeeCccchHHHHHHHHH
Confidence 4567999997542 568999999999998874
No 47
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=26.95 E-value=26 Score=34.18 Aligned_cols=31 Identities=23% Similarity=0.486 Sum_probs=22.9
Q ss_pred CCccCCCCCCCCc-eeeccccccchhhhhhhc
Q 015634 23 KMCFDCNAKNPTW-ASVTYGIFLCIDCSAVHR 53 (403)
Q Consensus 23 k~C~DCga~nP~W-aSv~~GiflC~~CsgiHR 53 (403)
..|-+||..+|.- ....-|-.+|.+|.-|..
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 4799999975522 234569999999998763
No 48
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=23.37 E-value=19 Score=30.39 Aligned_cols=37 Identities=19% Similarity=0.473 Sum_probs=26.7
Q ss_pred HHHH-HcCCCCCCccCCCCCCCCceeeccccccchhhhhh
Q 015634 13 FRKL-KAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAV 51 (403)
Q Consensus 13 ~~~L-~~~p~Nk~C~DCga~nP~WaSv~~GiflC~~Csgi 51 (403)
++++ ......-.|.-||....... ..||+-|..|.-.
T Consensus 50 vkkiE~~q~akytCPfCGk~~vKR~--avGIW~C~~Cgk~ 87 (116)
T 3cc2_Z 50 VAEIESEMNEDHACPNCGEDRVDRQ--GTGIWQCSYCDYK 87 (116)
T ss_dssp HHHHHHHHHSCEECSSSCCEEEEEE--ETTEEEETTTCCE
T ss_pred HHHHHHHhccCCcCCCCCCceeEec--CceeEECCCCCCE
Confidence 3444 56678889999997544433 4599999999754
No 49
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=23.35 E-value=27 Score=28.03 Aligned_cols=27 Identities=26% Similarity=0.641 Sum_probs=20.1
Q ss_pred CCCCCccCCCCCCCC-ceeec--cccccch
Q 015634 20 SENKMCFDCNAKNPT-WASVT--YGIFLCI 46 (403)
Q Consensus 20 p~Nk~C~DCga~nP~-WaSv~--~GiflC~ 46 (403)
+....|.+|+..++. |+++. -|-+.|-
T Consensus 23 ~~~~~C~~C~~~~~~lw~CL~~~Cg~vgCg 52 (97)
T 2uzg_A 23 KSLGTCQDCKVQGPNLWACLENRCSYVGCG 52 (97)
T ss_dssp HTTTCCSSSCCCCSSCEEECCTTCCCEECC
T ss_pred CCCCcCcCcCCCCCCceeeecccCCCcccC
Confidence 456789999966655 98777 7777774
No 50
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=23.03 E-value=31 Score=29.25 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=20.6
Q ss_pred CCCCCccCCCCCCCC-----------------ceeeccccccchhhhh
Q 015634 20 SENKMCFDCNAKNPT-----------------WASVTYGIFLCIDCSA 50 (403)
Q Consensus 20 p~Nk~C~DCga~nP~-----------------WaSv~~GiflC~~Csg 50 (403)
+.--.|.|||.+-+- -++=.||-.+|..|..
T Consensus 39 ~~~pkCg~Cg~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr 86 (121)
T 3u5e_g 39 ATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVK 86 (121)
T ss_dssp CCCCBCTTTCCBCTTCCCCCGGGGGSSCGGGSCCSSTTTTTSCSHHHH
T ss_pred CCCCCCCCCCCccCCccCCcHHHHHhcccCCCCcccCCcccchHHHHH
Confidence 334459999974221 2345689999988865
No 51
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.88 E-value=35 Score=27.42 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=20.3
Q ss_pred CCCCCccCCCCCC-------CC----------ceeeccccccchhhhh
Q 015634 20 SENKMCFDCNAKN-------PT----------WASVTYGIFLCIDCSA 50 (403)
Q Consensus 20 p~Nk~C~DCga~n-------P~----------WaSv~~GiflC~~Csg 50 (403)
+.--.|.|||.+- |. -++=.|| .+|..|..
T Consensus 31 ~~~pkC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cvr 77 (89)
T 3j21_d 31 PKIAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCMR 77 (89)
T ss_dssp CCCCBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHHH
T ss_pred CCCCCCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHHH
Confidence 3344799999641 21 2345699 99999975
No 52
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=22.54 E-value=30 Score=26.81 Aligned_cols=28 Identities=25% Similarity=0.641 Sum_probs=22.2
Q ss_pred CccCCCCCCCCceeeccccccchhhhhhhcc
Q 015634 24 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (403)
Q Consensus 24 ~C~DCga~nP~WaSv~~GiflC~~CsgiHR~ 54 (403)
.|.-||.+.- ...||++.|..|.+..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (78)
T 3cbb_A 2 LCAICGDRAT---GKHYGASSCDGCKGFFRR 29 (78)
T ss_dssp BCTTTSSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCeEeCCCCC---ceEeCCcchhhhceeeeE
Confidence 4778886543 568999999999998873
No 53
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=21.87 E-value=1.1e+02 Score=20.26 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015634 373 ISSLKNIAGETGKKLSSLASSL 394 (403)
Q Consensus 373 l~~lk~~v~~~A~KLs~~a~~~ 394 (403)
|.||-+-|++.+++...+++.|
T Consensus 3 MnQledKvEel~~~~~~l~nEv 24 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANEL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHH
Confidence 6789999999999999999886
No 54
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=21.56 E-value=22 Score=36.31 Aligned_cols=30 Identities=20% Similarity=0.732 Sum_probs=24.2
Q ss_pred CCCCccCCCCCCCCceeeccccccchhhhhhhc
Q 015634 21 ENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHR 53 (403)
Q Consensus 21 ~Nk~C~DCga~nP~WaSv~~GiflC~~CsgiHR 53 (403)
.++.|.-||.+.-. ..|||+.|..|.++.|
T Consensus 136 ~~~~C~VCg~~a~g---~hygv~sC~~Ck~FFr 165 (467)
T 3dzy_A 136 TKHICAICGDRSSG---KHYGVYSCEGCKGFFK 165 (467)
T ss_dssp -CEECTTTSSEECS---EETTEECCHHHHHHHH
T ss_pred CCCcceeCCCCCCC---CcCCCcchhhhhHhcc
Confidence 35679999986543 5899999999999887
No 55
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.33 E-value=58 Score=23.95 Aligned_cols=29 Identities=24% Similarity=0.641 Sum_probs=21.7
Q ss_pred CCCCCccCCCCCCCCceeeccccccchhhhh
Q 015634 20 SENKMCFDCNAKNPTWASVTYGIFLCIDCSA 50 (403)
Q Consensus 20 p~Nk~C~DCga~nP~WaSv~~GiflC~~Csg 50 (403)
++-..|.-||.+.-- -=.||+++|-.|-.
T Consensus 16 rg~~rC~vcGr~~g~--iRkfGL~~cR~cfR 44 (56)
T 3j20_P 16 KGARRCIRCGQYGPI--IRIQGLMLCRHCFR 44 (56)
T ss_dssp STTCCCSSSCCSSSC--CCTTTCCCCHHHHH
T ss_pred CCceEeecCCCCccc--ccccCChHHHHHHH
Confidence 566889999986532 23799999998864
Done!