Query 015637
Match_columns 403
No_of_seqs 251 out of 1867
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 08:10:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02237 glyceraldehyde-3-phos 100.0 3E-124 6E-129 952.5 34.8 384 18-402 25-412 (442)
2 PLN03096 glyceraldehyde-3-phos 100.0 5E-122 1E-126 930.1 35.3 394 6-403 1-395 (395)
3 PTZ00434 cytosolic glyceraldeh 100.0 4E-119 8E-124 896.7 30.7 335 67-402 2-355 (361)
4 PRK15425 gapA glyceraldehyde-3 100.0 1E-114 3E-119 861.6 33.5 330 67-400 1-331 (331)
5 PRK07403 glyceraldehyde-3-phos 100.0 2E-114 5E-119 860.7 33.3 333 69-402 2-336 (337)
6 PTZ00023 glyceraldehyde-3-phos 100.0 2E-114 4E-119 862.0 32.4 333 67-402 1-337 (337)
7 PRK07729 glyceraldehyde-3-phos 100.0 8E-113 2E-117 851.0 33.1 333 67-402 1-334 (343)
8 PLN02272 glyceraldehyde-3-phos 100.0 8E-111 2E-115 852.6 33.8 328 69-400 86-416 (421)
9 PRK13535 erythrose 4-phosphate 100.0 8E-110 2E-114 829.6 33.0 331 69-400 2-334 (336)
10 COG0057 GapA Glyceraldehyde-3- 100.0 1E-109 3E-114 815.0 32.6 333 68-402 1-334 (335)
11 PLN02358 glyceraldehyde-3-phos 100.0 4E-109 8E-114 826.2 33.7 330 67-400 4-337 (338)
12 PTZ00353 glycosomal glyceralde 100.0 4E-109 8E-114 824.4 32.8 329 67-401 1-336 (342)
13 PRK08955 glyceraldehyde-3-phos 100.0 3E-109 6E-114 825.7 30.6 329 67-400 1-332 (334)
14 TIGR01534 GAPDH-I glyceraldehy 100.0 1E-108 2E-113 819.6 29.9 323 70-393 1-327 (327)
15 PRK08289 glyceraldehyde-3-phos 100.0 3E-107 7E-112 829.6 32.3 332 68-401 127-471 (477)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 1E-105 3E-110 797.9 31.9 323 70-393 1-325 (325)
17 KOG0657 Glyceraldehyde 3-phosp 100.0 3.1E-83 6.6E-88 611.1 11.8 283 79-401 1-285 (285)
18 TIGR01546 GAPDH-II_archae glyc 100.0 3.8E-54 8.2E-59 429.1 23.1 235 71-334 1-243 (333)
19 PF02800 Gp_dh_C: Glyceraldehy 100.0 2.9E-50 6.3E-55 363.4 10.1 157 225-381 1-157 (157)
20 PRK04207 glyceraldehyde-3-phos 100.0 1E-47 2.2E-52 385.4 23.9 260 68-358 1-273 (341)
21 PF00044 Gp_dh_N: Glyceraldehy 100.0 1E-46 2.2E-51 338.2 11.6 149 69-220 1-151 (151)
22 PRK06901 aspartate-semialdehyd 100.0 1.8E-44 3.8E-49 356.2 20.2 233 68-333 3-254 (322)
23 smart00846 Gp_dh_N Glyceraldeh 100.0 2.6E-42 5.7E-47 309.1 16.6 149 69-220 1-149 (149)
24 COG0136 Asd Aspartate-semialde 100.0 4.3E-41 9.3E-46 332.9 20.0 289 68-389 1-324 (334)
25 TIGR01745 asd_gamma aspartate- 100.0 1.9E-40 4E-45 333.9 17.1 237 69-333 1-298 (366)
26 PRK14874 aspartate-semialdehyd 100.0 3.1E-39 6.7E-44 323.2 20.4 232 69-333 2-269 (334)
27 TIGR01296 asd_B aspartate-semi 100.0 5.9E-39 1.3E-43 321.9 19.1 233 70-333 1-272 (339)
28 PRK06728 aspartate-semialdehyd 100.0 1.5E-37 3.4E-42 311.6 20.9 236 68-333 5-277 (347)
29 PRK06598 aspartate-semialdehyd 100.0 7.4E-37 1.6E-41 308.6 18.4 238 69-333 2-300 (369)
30 PRK08040 putative semialdehyde 100.0 1.5E-32 3.3E-37 275.0 24.9 235 67-332 3-267 (336)
31 PRK05671 aspartate-semialdehyd 100.0 2.5E-31 5.3E-36 266.5 22.0 234 69-333 5-269 (336)
32 PLN02383 aspartate semialdehyd 100.0 2.3E-31 5.1E-36 267.5 21.5 238 65-333 4-277 (344)
33 TIGR00978 asd_EA aspartate-sem 100.0 1.3E-30 2.8E-35 261.6 21.1 254 69-351 1-282 (341)
34 PRK08664 aspartate-semialdehyd 100.0 5E-30 1.1E-34 258.2 23.9 240 67-334 2-268 (349)
35 PRK00436 argC N-acetyl-gamma-g 99.9 1.3E-25 2.7E-30 225.9 22.9 235 67-332 1-263 (343)
36 TIGR01850 argC N-acetyl-gamma- 99.9 1.4E-24 3E-29 218.7 17.8 237 69-333 1-267 (346)
37 PLN02968 Probable N-acetyl-gam 99.9 6.1E-24 1.3E-28 216.5 22.6 245 66-340 36-310 (381)
38 KOG4777 Aspartate-semialdehyde 99.9 2.6E-25 5.5E-30 211.9 10.3 235 70-333 5-277 (361)
39 PRK11863 N-acetyl-gamma-glutam 99.9 9.6E-22 2.1E-26 195.4 19.6 219 67-334 1-237 (313)
40 TIGR01851 argC_other N-acetyl- 99.8 4.3E-18 9.3E-23 168.8 19.6 218 69-333 2-237 (310)
41 PRK08300 acetaldehyde dehydrog 99.6 1.2E-15 2.6E-20 151.0 10.3 232 68-344 4-240 (302)
42 TIGR03215 ac_ald_DH_ac acetald 99.4 1.8E-12 3.9E-17 127.8 14.8 161 68-259 1-166 (285)
43 COG0002 ArgC Acetylglutamate s 99.2 1.1E-09 2.3E-14 109.9 20.7 236 67-335 1-272 (349)
44 PF01118 Semialdhyde_dh: Semia 99.1 9.2E-11 2E-15 101.0 4.6 114 70-209 1-119 (121)
45 PF02774 Semialdhyde_dhC: Semi 99.0 5.2E-10 1.1E-14 103.5 7.9 103 229-332 1-132 (184)
46 smart00859 Semialdhyde_dh Semi 98.3 1.8E-06 3.8E-11 74.0 6.8 115 70-209 1-121 (122)
47 PRK13301 putative L-aspartate 98.0 5.9E-06 1.3E-10 80.9 4.9 149 67-251 1-151 (267)
48 KOG4354 N-acetyl-gamma-glutamy 97.8 0.00037 8E-09 67.5 12.6 258 62-358 13-285 (340)
49 TIGR01921 DAP-DH diaminopimela 97.7 0.00085 1.8E-08 67.7 14.1 88 68-189 3-90 (324)
50 PRK13303 L-aspartate dehydroge 97.6 0.0001 2.3E-09 72.0 5.5 91 69-191 2-93 (265)
51 PRK06270 homoserine dehydrogen 97.5 0.0004 8.6E-09 70.4 9.1 37 67-103 1-44 (341)
52 COG1712 Predicted dinucleotide 97.4 0.00038 8.2E-09 66.8 7.1 142 69-250 1-148 (255)
53 PF01113 DapB_N: Dihydrodipico 97.2 0.00082 1.8E-08 58.3 5.8 92 69-184 1-93 (124)
54 TIGR00036 dapB dihydrodipicoli 97.2 0.00064 1.4E-08 66.6 5.7 95 69-188 2-97 (266)
55 PRK06349 homoserine dehydrogen 97.1 0.00076 1.6E-08 70.4 5.9 95 68-191 3-105 (426)
56 PRK13302 putative L-aspartate 97.1 0.0022 4.8E-08 63.0 8.6 86 68-183 6-92 (271)
57 PRK13304 L-aspartate dehydroge 97.0 0.0024 5.3E-08 62.4 8.0 89 69-188 2-90 (265)
58 PRK00048 dihydrodipicolinate r 96.8 0.0021 4.5E-08 62.6 6.2 87 69-188 2-89 (257)
59 COG0289 DapB Dihydrodipicolina 96.8 0.0048 1E-07 60.5 8.6 98 67-189 1-100 (266)
60 COG0460 ThrA Homoserine dehydr 96.7 0.0037 8.1E-08 63.3 7.1 37 67-103 2-45 (333)
61 PRK08374 homoserine dehydrogen 96.7 0.003 6.6E-08 64.0 6.5 37 67-103 1-44 (336)
62 PRK06813 homoserine dehydrogen 96.7 0.0043 9.4E-08 63.2 7.5 36 67-102 1-43 (346)
63 PRK06392 homoserine dehydrogen 96.7 0.0049 1.1E-07 62.3 7.8 35 69-103 1-40 (326)
64 PF01408 GFO_IDH_MocA: Oxidore 96.7 0.0048 1E-07 51.8 6.3 93 69-191 1-94 (120)
65 PRK11579 putative oxidoreducta 96.5 0.013 2.9E-07 58.9 9.2 92 68-191 4-96 (346)
66 PRK05447 1-deoxy-D-xylulose 5- 96.4 0.0045 9.8E-08 63.8 5.7 111 69-188 2-120 (385)
67 PRK09414 glutamate dehydrogena 96.3 0.013 2.7E-07 61.7 8.4 100 67-188 231-341 (445)
68 PLN02775 Probable dihydrodipic 96.0 0.021 4.6E-07 56.7 7.7 99 66-189 9-111 (286)
69 COG4569 MhpF Acetaldehyde dehy 96.0 0.033 7.1E-07 53.1 8.4 72 158-234 71-144 (310)
70 PF03447 NAD_binding_3: Homose 95.9 0.004 8.7E-08 52.8 1.7 87 75-190 1-89 (117)
71 PLN02696 1-deoxy-D-xylulose-5- 95.8 0.07 1.5E-06 56.2 10.6 111 69-190 58-180 (454)
72 cd01076 NAD_bind_1_Glu_DH NAD( 95.8 0.11 2.4E-06 49.8 11.2 35 66-103 29-63 (227)
73 cd05211 NAD_bind_Glu_Leu_Phe_V 95.4 0.16 3.5E-06 48.5 10.8 34 67-103 22-55 (217)
74 cd05313 NAD_bind_2_Glu_DH NAD( 94.7 0.15 3.3E-06 50.0 8.7 104 67-188 37-151 (254)
75 PRK10206 putative oxidoreducta 94.7 0.096 2.1E-06 53.0 7.5 95 68-191 1-96 (344)
76 PLN02700 homoserine dehydrogen 94.7 0.058 1.3E-06 55.7 6.0 37 67-103 2-44 (377)
77 TIGR03736 PRTRC_ThiF PRTRC sys 94.7 0.076 1.7E-06 51.7 6.5 108 67-179 10-127 (244)
78 COG0673 MviM Predicted dehydro 94.2 0.24 5.1E-06 49.0 9.0 97 67-191 2-99 (342)
79 PF02826 2-Hacid_dh_C: D-isome 94.1 0.07 1.5E-06 48.9 4.7 33 68-103 36-68 (178)
80 PF05368 NmrA: NmrA-like famil 93.9 0.082 1.8E-06 49.5 4.8 96 71-191 1-103 (233)
81 TIGR02130 dapB_plant dihydrodi 93.8 0.14 3.1E-06 50.7 6.4 91 69-186 1-97 (275)
82 CHL00194 ycf39 Ycf39; Provisio 93.5 0.17 3.8E-06 49.9 6.4 31 69-102 1-32 (317)
83 PLN00016 RNA-binding protein; 93.4 0.21 4.5E-06 50.8 7.1 40 60-102 44-88 (378)
84 PLN02477 glutamate dehydrogena 93.4 0.65 1.4E-05 48.6 10.7 33 68-103 206-238 (410)
85 PRK05472 redox-sensing transcr 93.2 0.24 5.3E-06 46.7 6.6 96 68-191 84-179 (213)
86 PTZ00079 NADP-specific glutama 93.2 0.43 9.4E-06 50.5 9.0 101 68-185 237-348 (454)
87 PF13460 NAD_binding_10: NADH( 93.1 0.066 1.4E-06 47.9 2.6 29 71-102 1-30 (183)
88 PRK09436 thrA bifunctional asp 93.0 0.065 1.4E-06 60.5 3.0 37 66-102 463-505 (819)
89 COG0569 TrkA K+ transport syst 92.9 0.22 4.8E-06 47.6 6.0 98 69-192 1-102 (225)
90 PRK14030 glutamate dehydrogena 92.8 0.5 1.1E-05 49.9 8.9 102 68-185 228-339 (445)
91 PRK07819 3-hydroxybutyryl-CoA 92.7 1.2 2.6E-05 44.0 11.1 148 70-237 7-179 (286)
92 COG2910 Putative NADH-flavin r 92.6 0.46 1E-05 44.8 7.4 31 69-102 1-32 (211)
93 PRK14031 glutamate dehydrogena 92.5 0.49 1.1E-05 50.0 8.4 103 68-189 228-341 (444)
94 PRK09466 metL bifunctional asp 92.4 0.082 1.8E-06 59.7 2.7 37 66-102 456-499 (810)
95 PF02670 DXP_reductoisom: 1-de 92.1 0.34 7.3E-06 42.9 5.6 40 71-111 1-41 (129)
96 PRK08229 2-dehydropantoate 2-r 91.9 0.83 1.8E-05 45.6 9.0 33 67-102 1-33 (341)
97 PRK08410 2-hydroxyacid dehydro 91.4 0.22 4.8E-06 49.9 4.3 31 68-101 145-175 (311)
98 PRK06487 glycerate dehydrogena 91.0 0.26 5.7E-06 49.5 4.3 31 68-101 148-178 (317)
99 TIGR03649 ergot_EASG ergot alk 90.9 0.62 1.3E-05 44.9 6.6 30 70-102 1-31 (285)
100 PF03435 Saccharop_dh: Sacchar 90.7 0.39 8.4E-06 49.0 5.3 95 71-189 1-96 (386)
101 PF10727 Rossmann-like: Rossma 90.7 0.18 3.9E-06 44.3 2.5 32 68-102 10-41 (127)
102 PRK06932 glycerate dehydrogena 90.4 0.32 6.9E-06 48.9 4.3 31 68-101 147-177 (314)
103 COG4091 Predicted homoserine d 90.3 0.52 1.1E-05 48.4 5.6 35 67-103 16-50 (438)
104 COG2344 AT-rich DNA-binding pr 90.2 0.6 1.3E-05 44.0 5.5 96 69-192 85-180 (211)
105 TIGR02853 spore_dpaA dipicolin 89.8 0.54 1.2E-05 46.6 5.3 31 69-102 152-182 (287)
106 cd01075 NAD_bind_Leu_Phe_Val_D 89.6 1.6 3.5E-05 40.9 8.0 30 69-102 29-58 (200)
107 COG0111 SerA Phosphoglycerate 89.6 0.41 8.9E-06 48.5 4.3 32 68-102 142-173 (324)
108 PRK08507 prephenate dehydrogen 89.4 1.1 2.4E-05 43.6 7.1 32 69-101 1-32 (275)
109 COG1052 LdhA Lactate dehydroge 89.4 0.43 9.3E-06 48.3 4.3 32 68-102 146-177 (324)
110 PLN02928 oxidoreductase family 89.3 0.43 9.3E-06 48.7 4.3 32 68-102 159-190 (347)
111 PF13380 CoA_binding_2: CoA bi 89.1 1.6 3.4E-05 37.5 7.0 83 70-191 2-88 (116)
112 KOG2741 Dimeric dihydrodiol de 89.1 1.1 2.4E-05 45.8 6.9 101 66-191 4-104 (351)
113 PRK07574 formate dehydrogenase 89.0 0.47 1E-05 49.2 4.3 32 68-102 192-223 (385)
114 PRK06436 glycerate dehydrogena 88.9 0.49 1.1E-05 47.4 4.3 32 68-102 122-153 (303)
115 PRK15409 bifunctional glyoxyla 88.9 0.5 1.1E-05 47.7 4.3 31 68-101 145-176 (323)
116 PLN02819 lysine-ketoglutarate 88.7 1.4 3E-05 51.2 8.3 91 69-183 570-673 (1042)
117 PRK11199 tyrA bifunctional cho 88.7 1.4 2.9E-05 45.4 7.4 32 67-101 97-129 (374)
118 PRK11790 D-3-phosphoglycerate 88.4 0.54 1.2E-05 49.0 4.4 31 68-101 151-181 (409)
119 PRK08306 dipicolinate synthase 88.4 0.77 1.7E-05 45.7 5.3 32 68-102 152-183 (296)
120 PRK13243 glyoxylate reductase; 88.3 0.56 1.2E-05 47.5 4.3 32 68-102 150-181 (333)
121 cd00401 AdoHcyase S-adenosyl-L 88.2 1.2 2.6E-05 46.6 6.8 29 69-100 203-231 (413)
122 TIGR00243 Dxr 1-deoxy-D-xylulo 88.2 0.84 1.8E-05 47.4 5.5 113 69-190 2-124 (389)
123 PRK15469 ghrA bifunctional gly 88.1 0.65 1.4E-05 46.7 4.5 30 69-101 137-166 (312)
124 PTZ00117 malate dehydrogenase; 88.0 2.1 4.6E-05 43.0 8.2 24 68-91 5-28 (319)
125 PF00056 Ldh_1_N: lactate/mala 87.9 1.6 3.5E-05 38.6 6.5 80 69-170 1-81 (141)
126 cd08230 glucose_DH Glucose deh 87.7 4 8.6E-05 40.7 10.0 30 69-101 174-203 (355)
127 PRK12480 D-lactate dehydrogena 87.6 0.73 1.6E-05 46.7 4.6 32 68-102 146-177 (330)
128 PRK06223 malate dehydrogenase; 87.4 2.9 6.3E-05 41.3 8.7 31 69-101 3-33 (307)
129 PRK05476 S-adenosyl-L-homocyst 87.3 1.5 3.2E-05 46.2 6.8 30 69-101 213-242 (425)
130 cd01483 E1_enzyme_family Super 87.3 0.91 2E-05 39.6 4.5 97 70-173 1-104 (143)
131 PRK11559 garR tartronate semia 87.2 0.76 1.6E-05 45.0 4.4 32 67-101 1-32 (296)
132 PF03446 NAD_binding_2: NAD bi 87.1 0.96 2.1E-05 40.7 4.7 30 69-101 2-31 (163)
133 PLN02306 hydroxypyruvate reduc 87.0 0.74 1.6E-05 47.7 4.4 32 68-102 165-197 (386)
134 TIGR01915 npdG NADPH-dependent 87.0 1.2 2.5E-05 42.1 5.3 30 69-101 1-31 (219)
135 cd00755 YgdL_like Family of ac 86.9 1.1 2.3E-05 43.3 5.1 24 68-91 11-34 (231)
136 TIGR01761 thiaz-red thiazoliny 86.9 2.5 5.5E-05 43.2 8.1 92 68-189 3-96 (343)
137 PRK15438 erythronate-4-phospha 86.8 0.78 1.7E-05 47.5 4.3 31 68-101 116-146 (378)
138 PLN03139 formate dehydrogenase 86.6 0.76 1.6E-05 47.7 4.1 31 68-101 199-229 (386)
139 PRK11880 pyrroline-5-carboxyla 86.0 1 2.2E-05 43.4 4.5 24 67-90 1-24 (267)
140 COG1748 LYS9 Saccharopine dehy 85.8 2.7 5.8E-05 43.8 7.7 98 69-189 2-99 (389)
141 PLN02494 adenosylhomocysteinas 85.3 2.2 4.7E-05 45.5 6.8 30 69-101 255-284 (477)
142 PRK12464 1-deoxy-D-xylulose 5- 85.3 1.4 3.1E-05 45.7 5.3 108 73-190 1-117 (383)
143 PF03807 F420_oxidored: NADP o 85.1 2.2 4.7E-05 34.3 5.4 43 70-113 1-43 (96)
144 COG2085 Predicted dinucleotide 84.5 2.6 5.7E-05 40.3 6.4 92 69-191 2-93 (211)
145 PF12338 RbcS: Ribulose-1,5-bi 84.5 0.53 1.1E-05 34.1 1.3 22 18-39 22-43 (45)
146 cd05213 NAD_bind_Glutamyl_tRNA 84.5 4.8 0.0001 40.2 8.6 32 68-101 178-209 (311)
147 TIGR01202 bchC 2-desacetyl-2-h 84.0 4.5 9.7E-05 39.8 8.1 22 70-91 147-168 (308)
148 PRK00066 ldh L-lactate dehydro 83.9 2.4 5.3E-05 42.6 6.3 23 69-91 7-29 (315)
149 PRK09880 L-idonate 5-dehydroge 83.9 4.8 0.0001 40.0 8.4 29 70-101 172-201 (343)
150 PTZ00082 L-lactate dehydrogena 83.8 2.1 4.6E-05 43.2 5.8 23 69-91 7-29 (321)
151 PRK07417 arogenate dehydrogena 83.7 1.4 3.1E-05 43.1 4.4 30 69-101 1-30 (279)
152 PLN02712 arogenate dehydrogena 83.4 1.6 3.5E-05 48.4 5.1 34 66-102 367-400 (667)
153 PRK00257 erythronate-4-phospha 83.2 1.4 3.1E-05 45.6 4.3 31 68-101 116-146 (381)
154 PRK08605 D-lactate dehydrogena 83.2 1.5 3.2E-05 44.4 4.3 31 68-101 146-177 (332)
155 PLN02256 arogenate dehydrogena 82.9 1.8 3.9E-05 43.3 4.8 34 67-103 35-68 (304)
156 PRK06249 2-dehydropantoate 2-r 82.8 7.2 0.00016 38.7 9.1 24 68-91 5-28 (313)
157 PRK08268 3-hydroxy-acyl-CoA de 82.7 3 6.6E-05 44.7 6.7 29 70-101 9-37 (507)
158 COG0743 Dxr 1-deoxy-D-xylulose 82.6 2.2 4.7E-05 44.1 5.2 43 69-112 2-45 (385)
159 TIGR01327 PGDH D-3-phosphoglyc 82.6 1.5 3.2E-05 47.2 4.3 32 68-102 138-169 (525)
160 COG1063 Tdh Threonine dehydrog 82.1 2.9 6.3E-05 42.4 6.0 29 70-100 171-199 (350)
161 PRK13581 D-3-phosphoglycerate 82.0 1.6 3.5E-05 47.0 4.3 32 68-102 140-171 (526)
162 cd05294 LDH-like_MDH_nadp A la 81.8 3.2 6.9E-05 41.6 6.1 32 69-101 1-33 (309)
163 PRK08818 prephenate dehydrogen 81.7 2.9 6.2E-05 43.3 5.9 31 68-100 4-35 (370)
164 COG0039 Mdh Malate/lactate deh 81.6 3.5 7.5E-05 41.8 6.3 23 69-91 1-23 (313)
165 TIGR02279 PaaC-3OHAcCoADH 3-hy 81.5 2.3 5E-05 45.6 5.3 30 69-101 6-35 (503)
166 PF02629 CoA_binding: CoA bind 81.3 1 2.2E-05 37.1 2.0 92 68-191 3-95 (96)
167 COG0451 WcaG Nucleoside-diphos 81.3 6.5 0.00014 37.7 7.9 30 70-102 2-32 (314)
168 PRK13403 ketol-acid reductoiso 81.0 2 4.4E-05 43.7 4.4 31 69-102 17-47 (335)
169 PLN02712 arogenate dehydrogena 80.7 2 4.4E-05 47.6 4.7 32 68-102 52-83 (667)
170 PLN02214 cinnamoyl-CoA reducta 80.4 6.9 0.00015 39.2 8.0 31 69-102 11-42 (342)
171 cd05293 LDH_1 A subgroup of L- 80.0 1.1 2.3E-05 45.1 2.0 31 69-100 4-34 (312)
172 PLN03209 translocon at the inn 79.9 9.3 0.0002 41.8 9.2 31 69-102 81-112 (576)
173 PLN00106 malate dehydrogenase 78.8 13 0.00027 37.8 9.3 23 69-91 19-42 (323)
174 cd01487 E1_ThiF_like E1_ThiF_l 78.7 1.6 3.5E-05 40.0 2.6 22 70-91 1-22 (174)
175 cd01484 E1-2_like Ubiquitin ac 78.4 2.6 5.6E-05 40.8 4.1 123 70-203 1-138 (234)
176 TIGR01019 sucCoAalpha succinyl 77.7 5.9 0.00013 39.5 6.5 86 69-188 7-93 (286)
177 PRK09599 6-phosphogluconate de 77.1 3.2 7E-05 41.0 4.4 31 69-102 1-31 (301)
178 COG0771 MurD UDP-N-acetylmuram 76.6 12 0.00027 39.7 8.8 88 68-184 7-95 (448)
179 PRK07634 pyrroline-5-carboxyla 76.6 3.9 8.4E-05 38.7 4.7 35 68-102 4-39 (245)
180 PRK03369 murD UDP-N-acetylmura 76.4 12 0.00027 39.7 8.8 83 69-183 13-95 (488)
181 PLN02602 lactate dehydrogenase 76.1 1.9 4.2E-05 44.1 2.6 23 69-91 38-60 (350)
182 KOG0069 Glyoxylate/hydroxypyru 76.0 2.5 5.4E-05 43.2 3.3 32 59-90 153-184 (336)
183 cd00757 ThiF_MoeB_HesA_family 75.9 1.8 4E-05 41.1 2.2 24 68-91 21-44 (228)
184 PRK03659 glutathione-regulated 75.5 4.2 9E-05 44.5 5.1 40 67-111 399-438 (601)
185 PF03721 UDPG_MGDP_dh_N: UDP-g 75.4 3.6 7.9E-05 38.1 4.0 30 69-101 1-30 (185)
186 KOG1502 Flavonol reductase/cin 75.2 12 0.00026 38.2 7.9 80 67-168 5-88 (327)
187 cd08242 MDR_like Medium chain 75.2 19 0.00041 34.9 9.2 83 69-183 157-239 (319)
188 TIGR02354 thiF_fam2 thiamine b 75.2 2.2 4.7E-05 40.1 2.5 24 68-91 21-44 (200)
189 PRK12490 6-phosphogluconate de 75.2 4 8.6E-05 40.4 4.5 31 69-102 1-31 (299)
190 cd01486 Apg7 Apg7 is an E1-lik 75.1 1.6 3.5E-05 44.0 1.7 118 70-190 1-139 (307)
191 PF02254 TrkA_N: TrkA-N domain 75.0 5.2 0.00011 33.1 4.5 29 71-102 1-29 (116)
192 cd08298 CAD2 Cinnamyl alcohol 75.0 37 0.0008 33.0 11.3 84 70-186 170-253 (329)
193 PF00208 ELFV_dehydrog: Glutam 74.9 4.3 9.3E-05 39.5 4.5 102 68-188 32-144 (244)
194 PRK08644 thiamine biosynthesis 74.7 2.5 5.4E-05 40.0 2.8 24 68-91 28-51 (212)
195 PLN02586 probable cinnamyl alc 74.5 11 0.00023 38.1 7.5 30 70-102 186-215 (360)
196 PF04321 RmlD_sub_bind: RmlD s 74.5 5.4 0.00012 39.1 5.2 30 69-101 1-31 (286)
197 PRK14619 NAD(P)H-dependent gly 74.2 4.6 0.0001 40.1 4.7 30 69-101 5-34 (308)
198 COG0287 TyrA Prephenate dehydr 74.2 4.5 9.7E-05 40.2 4.5 25 67-91 2-26 (279)
199 TIGR00872 gnd_rel 6-phosphoglu 74.1 4.3 9.3E-05 40.2 4.4 31 69-102 1-31 (298)
200 PRK15116 sulfur acceptor prote 74.1 3.7 8E-05 40.6 3.9 24 68-91 30-53 (268)
201 cd08239 THR_DH_like L-threonin 74.0 7.2 0.00016 38.3 6.0 30 69-101 165-195 (339)
202 PRK03562 glutathione-regulated 73.9 4.6 9.9E-05 44.4 5.0 37 68-109 400-436 (621)
203 PLN02688 pyrroline-5-carboxyla 73.8 4.7 0.0001 38.7 4.6 34 69-102 1-35 (266)
204 TIGR02356 adenyl_thiF thiazole 73.8 2.1 4.6E-05 40.1 2.1 24 68-91 21-44 (202)
205 COG3804 Uncharacterized conser 73.5 5 0.00011 40.3 4.6 35 67-103 1-35 (350)
206 PRK07502 cyclohexadienyl dehyd 73.4 5.1 0.00011 39.6 4.7 33 68-101 6-38 (307)
207 COG0334 GdhA Glutamate dehydro 73.4 20 0.00043 37.7 9.1 33 68-103 207-239 (411)
208 PRK09496 trkA potassium transp 72.8 4.5 9.8E-05 41.8 4.4 31 69-102 1-31 (453)
209 TIGR03366 HpnZ_proposed putati 72.6 8.9 0.00019 37.0 6.2 28 70-100 123-151 (280)
210 PRK01438 murD UDP-N-acetylmura 72.3 23 0.00049 37.2 9.5 30 69-101 17-46 (480)
211 KOG0068 D-3-phosphoglycerate d 72.3 4.7 0.0001 41.4 4.1 31 69-102 147-177 (406)
212 KOG1203 Predicted dehydrogenas 72.2 6.2 0.00013 41.4 5.2 30 68-100 79-109 (411)
213 TIGR01505 tartro_sem_red 2-hyd 72.1 4.4 9.4E-05 39.7 3.9 29 70-101 1-29 (291)
214 PRK06718 precorrin-2 dehydroge 71.9 50 0.0011 31.0 10.8 31 69-102 11-41 (202)
215 PTZ00075 Adenosylhomocysteinas 71.8 5.2 0.00011 42.7 4.6 31 68-101 254-284 (476)
216 PLN02778 3,5-epimerase/4-reduc 71.2 6 0.00013 38.9 4.7 32 64-98 5-37 (298)
217 PF02737 3HCDH_N: 3-hydroxyacy 71.0 6.2 0.00013 36.3 4.4 29 70-101 1-29 (180)
218 PRK12475 thiamine/molybdopteri 70.6 7.5 0.00016 39.6 5.3 24 68-91 24-47 (338)
219 TIGR02717 AcCoA-syn-alpha acet 70.5 12 0.00026 39.4 7.0 81 69-188 8-94 (447)
220 PF00670 AdoHcyase_NAD: S-aden 70.4 19 0.00042 33.1 7.4 23 69-91 24-46 (162)
221 cd08281 liver_ADH_like1 Zinc-d 70.3 9.7 0.00021 38.3 6.1 29 70-101 194-223 (371)
222 cd01338 MDH_choloroplast_like 70.2 8.8 0.00019 38.8 5.6 23 68-90 2-25 (322)
223 COG1064 AdhP Zn-dependent alco 70.0 23 0.0005 36.3 8.6 93 69-191 168-261 (339)
224 PRK05690 molybdopterin biosynt 70.0 3 6.6E-05 40.3 2.2 99 68-175 32-139 (245)
225 PRK00094 gpsA NAD(P)H-dependen 69.4 6.8 0.00015 38.5 4.6 30 69-101 2-31 (325)
226 PRK10669 putative cation:proto 68.6 8.1 0.00018 41.6 5.4 39 66-109 415-453 (558)
227 TIGR03026 NDP-sugDHase nucleot 68.3 6.1 0.00013 40.9 4.2 31 69-102 1-31 (411)
228 cd05290 LDH_3 A subgroup of L- 68.1 12 0.00025 37.6 6.0 22 70-91 1-22 (307)
229 PRK06476 pyrroline-5-carboxyla 68.0 4.9 0.00011 38.7 3.2 23 69-91 1-23 (258)
230 PRK11154 fadJ multifunctional 67.8 7.5 0.00016 43.5 5.0 153 69-242 310-487 (708)
231 PRK11064 wecC UDP-N-acetyl-D-m 67.4 7.3 0.00016 40.6 4.5 31 69-102 4-34 (415)
232 PRK15461 NADH-dependent gamma- 67.3 7.4 0.00016 38.5 4.4 31 69-102 2-32 (296)
233 PRK12491 pyrroline-5-carboxyla 67.1 8.3 0.00018 37.9 4.7 35 67-101 1-36 (272)
234 PRK06522 2-dehydropantoate 2-r 67.0 8 0.00017 37.5 4.5 30 69-101 1-30 (304)
235 TIGR02355 moeB molybdopterin s 66.9 4.2 9.2E-05 39.3 2.5 101 68-175 24-131 (240)
236 PLN02514 cinnamyl-alcohol dehy 66.8 19 0.0004 36.2 7.2 31 69-102 182-212 (357)
237 PRK06444 prephenate dehydrogen 66.8 6.6 0.00014 37.0 3.7 26 69-97 1-27 (197)
238 PRK15059 tartronate semialdehy 66.7 7.6 0.00017 38.4 4.3 30 69-101 1-30 (292)
239 PLN02657 3,8-divinyl protochlo 66.7 10 0.00023 38.9 5.5 32 68-102 60-92 (390)
240 PRK05865 hypothetical protein; 66.5 16 0.00034 41.9 7.3 31 69-102 1-32 (854)
241 PRK14618 NAD(P)H-dependent gly 66.4 8.1 0.00018 38.5 4.5 31 69-102 5-35 (328)
242 COG0702 Predicted nucleoside-d 66.0 8 0.00017 36.3 4.2 31 69-102 1-32 (275)
243 TIGR03201 dearomat_had 6-hydro 65.3 23 0.0005 35.2 7.6 30 69-101 168-197 (349)
244 TIGR03451 mycoS_dep_FDH mycoth 65.2 33 0.00072 34.2 8.7 30 69-101 178-208 (358)
245 PRK05708 2-dehydropantoate 2-r 65.1 8.1 0.00018 38.4 4.2 32 67-101 1-32 (305)
246 TIGR00936 ahcY adenosylhomocys 65.1 8.7 0.00019 40.3 4.6 30 69-101 196-225 (406)
247 cd01490 Ube1_repeat2 Ubiquitin 64.8 8.2 0.00018 40.8 4.3 143 70-222 1-165 (435)
248 PLN02545 3-hydroxybutyryl-CoA 64.5 9.4 0.0002 37.5 4.5 30 70-102 6-35 (295)
249 TIGR01087 murD UDP-N-acetylmur 64.5 30 0.00066 35.7 8.4 84 70-183 1-87 (433)
250 PF01262 AlaDh_PNT_C: Alanine 64.3 12 0.00026 33.8 4.8 33 68-103 20-52 (168)
251 PRK05678 succinyl-CoA syntheta 64.1 19 0.00042 36.0 6.6 86 68-188 8-95 (291)
252 KOG4039 Serine/threonine kinas 63.7 38 0.00083 32.2 8.0 31 69-101 19-51 (238)
253 PRK05479 ketol-acid reductoiso 63.7 8.9 0.00019 39.1 4.2 30 69-101 18-47 (330)
254 PRK09424 pntA NAD(P) transhydr 63.6 67 0.0015 34.8 11.0 31 68-101 165-195 (509)
255 PRK07201 short chain dehydroge 63.6 47 0.001 36.0 10.1 33 69-102 1-34 (657)
256 PRK07679 pyrroline-5-carboxyla 63.6 11 0.00023 36.9 4.7 33 69-101 4-37 (279)
257 PRK11730 fadB multifunctional 63.2 11 0.00025 42.1 5.3 29 70-101 315-343 (715)
258 PRK06129 3-hydroxyacyl-CoA deh 62.9 9.8 0.00021 37.7 4.3 31 69-102 3-33 (308)
259 cd08301 alcohol_DH_plants Plan 62.8 17 0.00037 36.4 6.1 30 69-101 189-219 (369)
260 PRK00421 murC UDP-N-acetylmura 62.6 34 0.00074 35.8 8.5 30 69-102 8-38 (461)
261 TIGR02441 fa_ox_alpha_mit fatt 62.6 7.9 0.00017 43.5 3.9 29 70-101 337-365 (737)
262 cd08294 leukotriene_B4_DH_like 62.5 31 0.00067 33.4 7.7 31 69-102 145-176 (329)
263 PRK06035 3-hydroxyacyl-CoA deh 62.4 11 0.00024 37.0 4.5 29 70-101 5-33 (291)
264 cd08277 liver_alcohol_DH_like 62.4 33 0.00072 34.4 8.1 30 69-101 186-216 (365)
265 PLN02178 cinnamyl-alcohol dehy 62.1 24 0.00052 35.9 7.1 31 69-102 180-210 (375)
266 PRK06988 putative formyltransf 61.4 10 0.00023 38.0 4.2 31 67-100 1-31 (312)
267 PRK09260 3-hydroxybutyryl-CoA 61.3 11 0.00024 36.9 4.3 29 70-101 3-31 (288)
268 PTZ00431 pyrroline carboxylate 61.2 8 0.00017 37.5 3.3 23 69-91 4-26 (260)
269 COG1179 Dinucleotide-utilizing 61.2 11 0.00025 37.0 4.2 123 69-199 31-163 (263)
270 TIGR02437 FadB fatty oxidation 61.2 13 0.00028 41.7 5.2 29 70-101 315-343 (714)
271 PRK05808 3-hydroxybutyryl-CoA 61.0 11 0.00024 36.7 4.3 29 70-101 5-33 (282)
272 PRK07531 bifunctional 3-hydrox 60.4 12 0.00026 40.0 4.6 32 67-101 3-34 (495)
273 cd08235 iditol_2_DH_like L-idi 60.0 57 0.0012 31.9 9.1 30 69-101 167-197 (343)
274 TIGR01759 MalateDH-SF1 malate 60.0 15 0.00033 37.1 5.2 24 68-91 3-27 (323)
275 cd01488 Uba3_RUB Ubiquitin act 59.5 9.6 0.00021 38.2 3.5 22 70-91 1-22 (291)
276 PRK07877 hypothetical protein; 59.5 5.9 0.00013 44.5 2.2 118 68-192 107-229 (722)
277 PRK05597 molybdopterin biosynt 59.4 7.1 0.00015 39.9 2.7 24 68-91 28-51 (355)
278 PRK02006 murD UDP-N-acetylmura 59.4 50 0.0011 35.0 9.2 29 70-102 9-37 (498)
279 PRK07680 late competence prote 59.0 12 0.00027 36.2 4.2 23 69-91 1-23 (273)
280 cd08254 hydroxyacyl_CoA_DH 6-h 58.9 66 0.0014 31.1 9.3 30 70-102 168-197 (338)
281 PLN00141 Tic62-NAD(P)-related 58.9 14 0.0003 35.0 4.4 30 69-101 18-48 (251)
282 TIGR02818 adh_III_F_hyde S-(hy 58.9 31 0.00068 34.7 7.2 30 69-101 187-217 (368)
283 PLN02260 probable rhamnose bio 58.8 14 0.0003 40.6 5.0 41 66-109 378-420 (668)
284 PLN02740 Alcohol dehydrogenase 58.8 20 0.00044 36.3 5.9 30 69-101 200-230 (381)
285 PRK03803 murD UDP-N-acetylmura 58.7 53 0.0011 34.2 9.1 88 70-189 8-97 (448)
286 PRK12921 2-dehydropantoate 2-r 58.7 13 0.00028 36.3 4.2 30 69-101 1-30 (305)
287 PLN02695 GDP-D-mannose-3',5'-e 58.7 13 0.00029 37.7 4.5 32 68-102 21-53 (370)
288 TIGR01381 E1_like_apg7 E1-like 58.7 5.1 0.00011 44.3 1.6 121 68-191 338-480 (664)
289 cd08296 CAD_like Cinnamyl alco 58.6 31 0.00068 33.8 7.0 30 70-102 166-195 (333)
290 PRK06130 3-hydroxybutyryl-CoA 58.5 14 0.0003 36.4 4.5 30 69-101 5-34 (311)
291 cd08300 alcohol_DH_class_III c 58.5 46 0.001 33.4 8.3 30 69-101 188-218 (368)
292 PRK04690 murD UDP-N-acetylmura 58.4 36 0.00078 35.9 7.9 86 69-183 9-94 (468)
293 COG5322 Predicted dehydrogenas 58.1 31 0.00068 34.7 6.7 121 69-222 168-291 (351)
294 PRK01710 murD UDP-N-acetylmura 58.0 41 0.00088 35.3 8.1 29 70-102 16-44 (458)
295 PLN02427 UDP-apiose/xylose syn 57.8 17 0.00036 36.9 5.0 33 68-102 14-47 (386)
296 TIGR00465 ilvC ketol-acid redu 57.8 14 0.0003 37.3 4.3 31 69-102 4-34 (314)
297 PLN02166 dTDP-glucose 4,6-dehy 57.3 14 0.00031 38.7 4.5 32 68-102 120-152 (436)
298 cd05283 CAD1 Cinnamyl alcohol 57.2 61 0.0013 31.9 8.8 30 69-101 171-200 (337)
299 PRK14573 bifunctional D-alanyl 57.1 42 0.00092 38.0 8.6 30 70-103 6-36 (809)
300 PRK15057 UDP-glucose 6-dehydro 56.9 13 0.00029 38.5 4.2 40 69-114 1-40 (388)
301 PRK08655 prephenate dehydrogen 56.9 15 0.00032 38.7 4.6 30 69-101 1-31 (437)
302 TIGR01470 cysG_Nterm siroheme 56.8 1.2E+02 0.0025 28.6 10.2 30 70-102 11-40 (205)
303 PRK05442 malate dehydrogenase; 56.0 18 0.0004 36.6 5.0 23 68-90 4-27 (326)
304 PRK10675 UDP-galactose-4-epime 55.9 16 0.00035 35.8 4.5 31 69-102 1-32 (338)
305 PLN02289 ribulose-bisphosphate 55.8 6.7 0.00014 36.3 1.6 42 1-42 1-43 (176)
306 PRK00141 murD UDP-N-acetylmura 55.6 61 0.0013 34.2 9.0 82 70-183 17-99 (473)
307 PRK08618 ornithine cyclodeamin 55.5 25 0.00054 35.3 5.8 32 69-102 128-159 (325)
308 PRK06545 prephenate dehydrogen 55.3 14 0.00031 37.6 4.1 22 70-91 2-23 (359)
309 cd08231 MDR_TM0436_like Hypoth 55.3 55 0.0012 32.5 8.2 30 69-101 179-209 (361)
310 cd08237 ribitol-5-phosphate_DH 55.2 40 0.00086 33.6 7.2 30 70-101 166-196 (341)
311 PLN02206 UDP-glucuronate decar 55.2 16 0.00034 38.5 4.4 32 68-102 119-151 (442)
312 PRK06928 pyrroline-5-carboxyla 55.1 19 0.00041 35.3 4.7 34 69-102 2-36 (277)
313 PLN02896 cinnamyl-alcohol dehy 54.8 20 0.00044 35.7 5.0 32 68-102 10-42 (353)
314 PRK07530 3-hydroxybutyryl-CoA 54.5 19 0.0004 35.3 4.6 30 69-101 5-34 (292)
315 cd08269 Zn_ADH9 Alcohol dehydr 54.4 30 0.00064 33.1 5.9 31 69-102 131-162 (312)
316 TIGR02440 FadJ fatty oxidation 54.3 67 0.0014 36.0 9.4 153 69-242 305-482 (699)
317 PRK11908 NAD-dependent epimera 54.2 19 0.0004 35.8 4.6 32 69-102 2-34 (347)
318 PRK09496 trkA potassium transp 54.0 18 0.00039 37.3 4.6 32 68-102 231-262 (453)
319 PRK03806 murD UDP-N-acetylmura 54.0 69 0.0015 33.2 9.0 105 69-206 7-116 (438)
320 PRK09987 dTDP-4-dehydrorhamnos 53.6 25 0.00054 34.4 5.3 23 69-91 1-24 (299)
321 cd08263 Zn_ADH10 Alcohol dehyd 53.5 78 0.0017 31.6 9.0 29 70-101 190-219 (367)
322 PRK05600 thiamine biosynthesis 53.3 7.4 0.00016 40.1 1.6 110 68-183 41-157 (370)
323 PRK07688 thiamine/molybdopteri 53.2 13 0.00028 37.9 3.3 40 68-109 24-64 (339)
324 PRK07066 3-hydroxybutyryl-CoA 53.1 19 0.00042 36.4 4.5 29 70-101 9-37 (321)
325 cd08295 double_bond_reductase_ 52.8 37 0.00081 33.4 6.5 30 69-101 153-183 (338)
326 PRK10309 galactitol-1-phosphat 52.8 60 0.0013 32.1 8.0 30 69-101 162-192 (347)
327 cd08255 2-desacetyl-2-hydroxye 52.7 69 0.0015 30.2 8.1 30 69-101 99-129 (277)
328 cd08233 butanediol_DH_like (2R 52.3 64 0.0014 31.9 8.1 29 70-101 175-204 (351)
329 PRK08293 3-hydroxybutyryl-CoA 52.2 21 0.00045 35.0 4.5 30 69-101 4-33 (287)
330 COG1023 Gnd Predicted 6-phosph 52.2 22 0.00047 35.2 4.5 43 69-116 1-43 (300)
331 TIGR01408 Ube1 ubiquitin-activ 52.1 18 0.00039 42.3 4.6 129 68-204 419-566 (1008)
332 TIGR02825 B4_12hDH leukotriene 52.0 62 0.0013 31.6 7.9 31 69-102 140-171 (325)
333 cd08262 Zn_ADH8 Alcohol dehydr 52.0 83 0.0018 30.7 8.8 30 69-101 163-192 (341)
334 PRK02472 murD UDP-N-acetylmura 51.8 57 0.0012 33.7 7.9 88 70-189 7-97 (447)
335 PLN03154 putative allyl alcoho 51.8 67 0.0015 32.1 8.2 30 69-101 160-190 (348)
336 cd01489 Uba2_SUMO Ubiquitin ac 51.1 17 0.00038 36.7 3.8 22 70-91 1-22 (312)
337 PLN02827 Alcohol dehydrogenase 51.1 70 0.0015 32.5 8.3 29 69-100 195-224 (378)
338 PRK14106 murD UDP-N-acetylmura 50.7 60 0.0013 33.6 7.9 93 69-190 6-98 (450)
339 cd05292 LDH_2 A subgroup of L- 50.6 23 0.00049 35.4 4.6 23 69-91 1-23 (308)
340 cd08245 CAD Cinnamyl alcohol d 50.5 71 0.0015 31.0 8.0 31 69-102 164-194 (330)
341 PLN02240 UDP-glucose 4-epimera 50.4 24 0.00051 34.8 4.7 32 68-102 5-37 (352)
342 TIGR03466 HpnA hopanoid-associ 50.2 21 0.00045 34.5 4.2 31 69-102 1-32 (328)
343 TIGR00518 alaDH alanine dehydr 50.2 22 0.00048 36.6 4.5 30 69-101 168-197 (370)
344 cd08284 FDH_like_2 Glutathione 50.2 59 0.0013 31.8 7.4 29 69-100 169-198 (344)
345 TIGR01214 rmlD dTDP-4-dehydror 50.2 21 0.00044 34.1 4.1 29 70-101 1-30 (287)
346 PRK06153 hypothetical protein; 50.1 11 0.00025 39.3 2.4 32 68-101 176-207 (393)
347 PRK07411 hypothetical protein; 49.9 12 0.00025 38.9 2.4 24 68-91 38-61 (390)
348 cd01492 Aos1_SUMO Ubiquitin ac 49.8 18 0.00039 33.8 3.5 24 68-91 21-44 (197)
349 cd05280 MDR_yhdh_yhfp Yhdh and 49.7 68 0.0015 30.8 7.6 29 70-101 149-178 (325)
350 PLN02572 UDP-sulfoquinovose sy 49.5 29 0.00063 36.3 5.4 32 68-102 47-79 (442)
351 PLN00112 malate dehydrogenase 49.4 29 0.00062 36.9 5.3 23 68-90 100-123 (444)
352 PRK09291 short chain dehydroge 49.3 27 0.00058 32.5 4.6 33 67-102 1-34 (257)
353 PTZ00142 6-phosphogluconate de 49.3 20 0.00043 38.3 4.1 31 69-102 2-32 (470)
354 PF01073 3Beta_HSD: 3-beta hyd 49.1 59 0.0013 31.9 7.2 27 73-100 2-29 (280)
355 cd08278 benzyl_alcohol_DH Benz 49.1 39 0.00085 33.9 6.1 30 69-101 188-218 (365)
356 PRK10083 putative oxidoreducta 48.7 58 0.0012 31.8 7.1 20 70-89 163-182 (339)
357 cd05191 NAD_bind_amino_acid_DH 48.6 31 0.00068 27.5 4.3 22 69-90 24-45 (86)
358 PF01370 Epimerase: NAD depend 48.4 35 0.00076 31.1 5.2 30 71-103 1-31 (236)
359 PRK15181 Vi polysaccharide bio 48.3 25 0.00054 35.2 4.5 31 69-102 16-47 (348)
360 TIGR01757 Malate-DH_plant mala 48.2 32 0.00069 35.9 5.3 24 68-91 44-68 (387)
361 PRK08328 hypothetical protein; 48.1 17 0.00037 34.8 3.1 24 68-91 27-50 (231)
362 cd05288 PGDH Prostaglandin deh 47.6 72 0.0016 30.8 7.5 30 69-101 147-177 (329)
363 cd01339 LDH-like_MDH L-lactate 47.5 37 0.0008 33.6 5.5 28 71-101 1-29 (300)
364 cd08260 Zn_ADH6 Alcohol dehydr 47.2 44 0.00095 32.8 6.0 30 70-102 168-197 (345)
365 PRK04308 murD UDP-N-acetylmura 47.2 1.1E+02 0.0024 31.7 9.3 91 69-189 6-96 (445)
366 cd00704 MDH Malate dehydrogena 47.1 35 0.00075 34.5 5.3 23 69-91 1-24 (323)
367 PRK08017 oxidoreductase; Provi 46.8 31 0.00068 32.1 4.7 31 69-102 3-34 (256)
368 cd01485 E1-1_like Ubiquitin ac 46.4 18 0.00038 33.8 2.9 24 68-91 19-42 (198)
369 COG1087 GalE UDP-glucose 4-epi 46.3 42 0.00092 34.1 5.6 247 69-364 1-294 (329)
370 COG0373 HemA Glutamyl-tRNA red 46.1 32 0.00069 36.3 4.9 32 69-102 179-210 (414)
371 cd08232 idonate-5-DH L-idonate 46.1 1.1E+02 0.0025 29.7 8.7 30 69-101 167-197 (339)
372 PRK07326 short chain dehydroge 46.0 30 0.00066 31.8 4.4 31 69-102 7-38 (237)
373 cd08292 ETR_like_2 2-enoyl thi 46.0 53 0.0011 31.6 6.3 31 69-102 141-172 (324)
374 PRK08223 hypothetical protein; 45.9 26 0.00056 35.1 4.1 98 68-169 27-128 (287)
375 cd05291 HicDH_like L-2-hydroxy 45.9 30 0.00065 34.4 4.6 31 70-101 2-32 (306)
376 cd08238 sorbose_phosphate_red 45.7 1.1E+02 0.0025 31.2 9.0 32 70-101 178-210 (410)
377 TIGR00715 precor6x_red precorr 45.4 21 0.00044 35.1 3.3 28 69-100 1-29 (256)
378 smart00833 CobW_C Cobalamin sy 45.2 32 0.00069 27.2 3.8 50 310-359 2-55 (92)
379 PRK00683 murD UDP-N-acetylmura 45.1 28 0.0006 36.1 4.4 86 69-190 4-89 (418)
380 COG1062 AdhC Zn-dependent alco 45.1 44 0.00096 34.5 5.6 88 69-179 187-275 (366)
381 PRK02318 mannitol-1-phosphate 44.8 26 0.00055 36.1 4.0 31 69-101 1-31 (381)
382 TIGR00873 gnd 6-phosphoglucona 44.7 24 0.00052 37.6 3.8 30 70-102 1-30 (467)
383 cd08236 sugar_DH NAD(P)-depend 44.4 63 0.0014 31.6 6.6 31 69-102 161-192 (343)
384 cd04885 ACT_ThrD-I Tandem C-te 44.4 1.2E+02 0.0027 22.8 6.9 58 273-331 4-61 (68)
385 cd08234 threonine_DH_like L-th 44.1 57 0.0012 31.6 6.2 29 70-101 162-191 (334)
386 PF02558 ApbA: Ketopantoate re 43.9 37 0.00079 29.4 4.3 29 71-102 1-29 (151)
387 PF01488 Shikimate_DH: Shikima 43.8 37 0.00079 29.5 4.3 32 69-102 13-44 (135)
388 PF00070 Pyr_redox: Pyridine n 43.3 48 0.001 25.7 4.5 30 70-102 1-30 (80)
389 PRK15182 Vi polysaccharide bio 43.2 28 0.00061 36.5 4.1 30 69-102 7-36 (425)
390 TIGR02819 fdhA_non_GSH formald 43.1 1.2E+02 0.0025 31.2 8.6 31 69-102 187-217 (393)
391 TIGR01181 dTDP_gluc_dehyt dTDP 42.9 31 0.00067 33.0 4.1 31 70-101 1-32 (317)
392 cd08287 FDH_like_ADH3 formalde 42.9 82 0.0018 30.8 7.2 29 70-101 171-200 (345)
393 PRK00045 hemA glutamyl-tRNA re 42.8 32 0.00069 35.9 4.4 31 69-102 183-214 (423)
394 PRK04663 murD UDP-N-acetylmura 42.6 1.3E+02 0.0027 31.4 8.8 84 69-183 8-93 (438)
395 TIGR01763 MalateDH_bact malate 42.5 35 0.00077 34.1 4.5 31 69-101 2-32 (305)
396 cd08293 PTGR2 Prostaglandin re 42.3 56 0.0012 32.0 5.9 31 69-102 156-188 (345)
397 PRK14192 bifunctional 5,10-met 42.1 85 0.0018 31.2 7.1 23 69-91 160-183 (283)
398 cd01065 NAD_bind_Shikimate_DH 42.1 40 0.00086 29.2 4.3 22 69-90 20-41 (155)
399 PRK14851 hypothetical protein; 41.9 11 0.00024 42.1 0.8 98 68-169 43-144 (679)
400 COG0345 ProC Pyrroline-5-carbo 41.9 37 0.00081 33.6 4.5 34 69-102 2-36 (266)
401 cd08261 Zn_ADH7 Alcohol dehydr 41.8 1.8E+02 0.0038 28.4 9.3 30 70-102 162-191 (337)
402 PRK10538 malonic semialdehyde 41.4 40 0.00087 31.5 4.5 30 69-101 1-31 (248)
403 PRK07878 molybdopterin biosynt 41.3 19 0.0004 37.4 2.4 24 68-91 42-65 (392)
404 TIGR00561 pntA NAD(P) transhyd 41.3 66 0.0014 34.9 6.6 30 69-101 165-194 (511)
405 cd08246 crotonyl_coA_red croto 41.2 2.1E+02 0.0046 28.8 10.0 30 69-101 195-225 (393)
406 cd00300 LDH_like L-lactate deh 41.1 1.3E+02 0.0028 29.9 8.2 21 71-91 1-21 (300)
407 cd08289 MDR_yhfp_like Yhfp put 41.0 81 0.0018 30.4 6.7 30 70-102 149-179 (326)
408 cd08259 Zn_ADH5 Alcohol dehydr 41.0 90 0.002 30.0 7.0 30 69-101 164-194 (332)
409 TIGR01035 hemA glutamyl-tRNA r 40.8 37 0.00081 35.4 4.5 32 69-102 181-212 (417)
410 PLN00198 anthocyanidin reducta 40.7 39 0.00084 33.3 4.5 31 68-101 9-40 (338)
411 cd01336 MDH_cytoplasmic_cytoso 40.7 41 0.00089 34.0 4.7 34 68-101 2-40 (325)
412 PRK10754 quinone oxidoreductas 40.5 1.5E+02 0.0032 28.7 8.5 31 69-102 142-173 (327)
413 cd08285 NADP_ADH NADP(H)-depen 40.3 1.4E+02 0.003 29.4 8.4 30 69-101 168-198 (351)
414 PRK14620 NAD(P)H-dependent gly 40.3 40 0.00087 33.5 4.5 23 69-91 1-23 (326)
415 PRK12320 hypothetical protein; 40.2 37 0.0008 38.2 4.6 31 69-102 1-32 (699)
416 PRK02705 murD UDP-N-acetylmura 40.1 53 0.0012 34.1 5.6 29 70-102 2-30 (459)
417 PLN02662 cinnamyl-alcohol dehy 40.0 37 0.00079 32.9 4.1 30 69-101 5-35 (322)
418 cd08290 ETR 2-enoyl thioester 39.8 74 0.0016 31.0 6.3 30 70-102 149-179 (341)
419 KOG0455 Homoserine dehydrogena 39.6 23 0.0005 35.2 2.5 35 68-102 3-43 (364)
420 KOG0022 Alcohol dehydrogenase, 39.6 90 0.002 32.2 6.7 31 69-101 194-224 (375)
421 PLN02702 L-idonate 5-dehydroge 39.3 68 0.0015 31.9 6.0 23 69-91 183-205 (364)
422 cd08270 MDR4 Medium chain dehy 39.3 2.5E+02 0.0055 26.5 9.8 87 69-188 134-221 (305)
423 PRK06719 precorrin-2 dehydroge 39.0 48 0.001 29.9 4.4 30 69-101 14-43 (157)
424 KOG2250 Glutamate/leucine/phen 38.9 1.4E+02 0.0031 32.2 8.3 102 69-188 252-363 (514)
425 cd08258 Zn_ADH4 Alcohol dehydr 38.9 2.6E+02 0.0057 27.1 10.0 28 70-100 167-194 (306)
426 PLN02353 probable UDP-glucose 38.9 42 0.0009 35.9 4.6 32 69-101 2-33 (473)
427 PRK05653 fabG 3-ketoacyl-(acyl 38.9 48 0.001 30.2 4.6 31 69-102 6-37 (246)
428 TIGR01179 galE UDP-glucose-4-e 38.8 40 0.00086 32.3 4.1 29 70-101 1-30 (328)
429 PF07683 CobW_C: Cobalamin syn 38.7 39 0.00085 26.9 3.5 50 310-359 2-54 (94)
430 PRK07023 short chain dehydroge 38.7 42 0.00091 31.1 4.2 30 69-101 2-32 (243)
431 COG1091 RfbD dTDP-4-dehydrorha 38.7 41 0.0009 33.6 4.2 41 69-113 1-46 (281)
432 PLN02350 phosphogluconate dehy 38.4 30 0.00066 37.2 3.5 126 69-210 7-157 (493)
433 PRK05086 malate dehydrogenase; 38.4 51 0.0011 33.1 4.9 21 69-89 1-22 (312)
434 cd08248 RTN4I1 Human Reticulon 38.3 1.5E+02 0.0032 28.9 8.2 31 69-102 164-195 (350)
435 cd08243 quinone_oxidoreductase 38.0 86 0.0019 29.8 6.3 30 70-102 145-175 (320)
436 PRK06019 phosphoribosylaminoim 38.0 46 0.001 33.9 4.6 31 69-102 3-33 (372)
437 TIGR01777 yfcH conserved hypot 38.0 35 0.00077 32.3 3.6 29 71-102 1-30 (292)
438 PRK12745 3-ketoacyl-(acyl-carr 37.7 52 0.0011 30.6 4.6 32 67-101 1-33 (256)
439 PRK06947 glucose-1-dehydrogena 37.7 47 0.001 30.8 4.3 31 67-100 1-32 (248)
440 PF00899 ThiF: ThiF family; I 37.7 34 0.00075 29.4 3.2 102 69-177 3-111 (135)
441 PRK12827 short chain dehydroge 37.4 49 0.0011 30.4 4.4 30 69-101 7-37 (249)
442 PLN02583 cinnamoyl-CoA reducta 37.4 47 0.001 32.4 4.4 30 70-102 8-38 (297)
443 PRK10217 dTDP-glucose 4,6-dehy 37.3 42 0.00091 33.2 4.1 23 69-91 2-25 (355)
444 PF02192 PI3K_p85B: PI3-kinase 37.3 55 0.0012 26.5 4.0 36 312-347 2-38 (78)
445 cd05188 MDR Medium chain reduc 37.1 76 0.0017 29.2 5.6 30 69-101 136-165 (271)
446 PRK14806 bifunctional cyclohex 37.1 44 0.00095 37.2 4.6 34 67-101 2-35 (735)
447 cd05281 TDH Threonine dehydrog 37.0 1.8E+02 0.0038 28.6 8.5 28 70-100 166-194 (341)
448 PRK06924 short chain dehydroge 36.4 55 0.0012 30.4 4.6 29 70-101 3-32 (251)
449 COG1893 ApbA Ketopantoate redu 35.9 46 0.001 33.4 4.1 23 69-91 1-23 (307)
450 TIGR00507 aroE shikimate 5-deh 35.6 1.7E+02 0.0036 28.4 7.9 31 69-102 118-148 (270)
451 TIGR01758 MDH_euk_cyt malate d 35.4 61 0.0013 32.8 5.0 21 70-90 1-22 (324)
452 PRK08762 molybdopterin biosynt 35.4 24 0.00051 36.2 2.0 25 67-91 134-158 (376)
453 cd05279 Zn_ADH1 Liver alcohol 35.2 1.2E+02 0.0025 30.5 7.0 22 70-91 186-207 (365)
454 PLN02260 probable rhamnose bio 35.2 51 0.0011 36.2 4.7 34 68-102 6-40 (668)
455 PRK12826 3-ketoacyl-(acyl-carr 34.8 53 0.0011 30.2 4.1 31 69-102 7-38 (251)
456 cd01078 NAD_bind_H4MPT_DH NADP 34.8 59 0.0013 29.6 4.4 31 69-102 29-60 (194)
457 PRK08267 short chain dehydroge 34.7 60 0.0013 30.4 4.6 29 70-101 3-32 (260)
458 KOG0024 Sorbitol dehydrogenase 34.2 63 0.0014 33.2 4.7 39 62-103 164-202 (354)
459 cd00650 LDH_MDH_like NAD-depen 34.2 29 0.00062 33.6 2.3 21 71-91 1-22 (263)
460 cd05285 sorbitol_DH Sorbitol d 34.2 1.6E+02 0.0034 29.0 7.6 29 69-100 164-193 (343)
461 PRK06046 alanine dehydrogenase 33.9 59 0.0013 32.7 4.6 33 69-103 130-162 (326)
462 TIGR03570 NeuD_NnaD sugar O-ac 33.7 66 0.0014 28.7 4.5 30 70-102 1-30 (201)
463 TIGR01751 crot-CoA-red crotony 33.6 2.1E+02 0.0046 29.0 8.6 30 69-101 191-221 (398)
464 KOG2380 Prephenate dehydrogena 33.6 49 0.0011 34.4 3.8 24 68-91 52-75 (480)
465 PF07991 IlvN: Acetohydroxy ac 33.5 57 0.0012 30.2 4.0 29 69-100 5-33 (165)
466 TIGR01472 gmd GDP-mannose 4,6- 33.5 57 0.0012 32.3 4.4 30 70-102 2-32 (343)
467 PRK08125 bifunctional UDP-gluc 33.3 55 0.0012 36.1 4.6 32 69-102 316-348 (660)
468 PRK05884 short chain dehydroge 33.2 63 0.0014 30.0 4.4 30 69-101 1-31 (223)
469 cd05212 NAD_bind_m-THF_DH_Cycl 33.1 1.5E+02 0.0033 26.3 6.6 29 69-100 29-58 (140)
470 cd08244 MDR_enoyl_red Possible 33.0 2.5E+02 0.0053 26.8 8.6 31 69-102 144-175 (324)
471 PRK03815 murD UDP-N-acetylmura 32.8 54 0.0012 34.1 4.2 29 69-102 1-29 (401)
472 PRK05565 fabG 3-ketoacyl-(acyl 32.6 67 0.0014 29.4 4.4 29 69-100 6-35 (247)
473 PRK05396 tdh L-threonine 3-deh 32.0 1.2E+02 0.0027 29.6 6.4 29 69-100 165-194 (341)
474 cd08265 Zn_ADH3 Alcohol dehydr 32.0 2.2E+02 0.0047 28.7 8.4 29 70-101 206-235 (384)
475 cd08240 6_hydroxyhexanoate_dh_ 31.8 97 0.0021 30.5 5.7 22 70-91 178-199 (350)
476 PRK07231 fabG 3-ketoacyl-(acyl 31.6 71 0.0015 29.4 4.4 31 69-102 6-37 (251)
477 PLN02948 phosphoribosylaminoim 31.3 86 0.0019 34.4 5.6 33 67-102 21-53 (577)
478 cd08249 enoyl_reductase_like e 31.2 1.5E+02 0.0033 29.1 7.0 30 69-101 156-186 (339)
479 PF00107 ADH_zinc_N: Zinc-bind 31.2 18 0.00038 30.3 0.3 36 157-192 57-92 (130)
480 PLN02650 dihydroflavonol-4-red 30.9 61 0.0013 32.2 4.1 30 69-101 6-36 (351)
481 PRK07024 short chain dehydroge 30.9 78 0.0017 29.7 4.7 32 67-101 1-33 (257)
482 PF00289 CPSase_L_chain: Carba 30.8 60 0.0013 27.6 3.5 33 67-102 1-33 (110)
483 cd04886 ACT_ThrD-II-like C-ter 30.8 1.7E+02 0.0038 21.0 5.7 58 274-331 5-66 (73)
484 TIGR01772 MDH_euk_gproteo mala 30.8 78 0.0017 31.9 4.8 22 70-91 1-23 (312)
485 PRK11150 rfaD ADP-L-glycero-D- 30.7 63 0.0014 31.2 4.1 29 71-102 2-31 (308)
486 PLN00203 glutamyl-tRNA reducta 30.6 56 0.0012 35.4 4.0 32 69-102 267-298 (519)
487 PRK12825 fabG 3-ketoacyl-(acyl 30.5 74 0.0016 29.0 4.3 29 69-100 7-36 (249)
488 PRK08219 short chain dehydroge 30.5 47 0.001 30.1 3.0 30 69-102 4-34 (227)
489 cd01337 MDH_glyoxysomal_mitoch 30.5 48 0.001 33.4 3.3 23 69-91 1-24 (310)
490 PRK14852 hypothetical protein; 30.4 41 0.00089 39.2 3.0 24 68-91 332-355 (989)
491 PRK10537 voltage-gated potassi 29.4 68 0.0015 33.4 4.3 31 69-102 241-271 (393)
492 PRK05993 short chain dehydroge 29.3 84 0.0018 30.0 4.7 30 69-101 5-35 (277)
493 PRK05586 biotin carboxylase; V 29.3 66 0.0014 33.6 4.2 31 68-101 2-32 (447)
494 PRK07074 short chain dehydroge 29.2 85 0.0018 29.3 4.6 29 70-101 4-33 (257)
495 PRK12828 short chain dehydroge 29.0 79 0.0017 28.7 4.2 30 70-102 9-39 (239)
496 KOG1399 Flavin-containing mono 29.0 54 0.0012 34.9 3.4 32 66-100 4-35 (448)
497 PTZ00325 malate dehydrogenase; 28.9 93 0.002 31.5 5.0 22 69-90 9-31 (321)
498 PRK07577 short chain dehydroge 28.7 85 0.0018 28.7 4.4 29 70-101 5-34 (234)
499 PRK12829 short chain dehydroge 28.3 81 0.0018 29.3 4.3 30 69-101 12-42 (264)
500 cd01080 NAD_bind_m-THF_DH_Cycl 28.3 92 0.002 28.5 4.5 30 69-101 45-75 (168)
No 1
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=3e-124 Score=952.48 Aligned_cols=384 Identities=76% Similarity=1.166 Sum_probs=367.0
Q ss_pred CcccccccccccCCCCCCCCC-CCcchhhhhhhhhccCCCccccccccccCceeEEEEccChhHHHHHHHHHcCCCCCce
Q 015637 18 KGFSEFSGLRNSASLPFGRKS-SDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLE 96 (403)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ikVaInGfGrIGr~vlr~l~~~~~~~~e 96 (403)
-.|++|+|||+++++++++.. +.+|++.++.|+.++.++ ..+.+..++|++||||||||||||.++|++.+++++++|
T Consensus 25 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ikVgINGFGRIGR~vlR~~~~~~~~~ie 103 (442)
T PLN02237 25 LEVAEFSGLRASSCVTFAKNAREASFFDVVASQLAPKVAG-STPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLD 103 (442)
T ss_pred ccccccccccccccccccccccchhHHHHhhhhhhhhhcc-cccccccccceEEEEEECCChHHHHHHHHHHHccCCCeE
Confidence 469999999999999998765 788999999999988887 888999999999999999999999999998865323599
Q ss_pred EEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCCCCCCCCCCcCccEEeeCCCCcCCHhhHH
Q 015637 97 VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAG 176 (403)
Q Consensus 97 vvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~ 176 (403)
||+|||+.++++++|||||||+||+|+++++..+++.|.|+|+.|.+++++||.++||+++|+||||||||.|+++++++
T Consensus 104 vVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~ 183 (442)
T PLN02237 104 VVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAG 183 (442)
T ss_pred EEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEEcCCchhCChhhcCCCEEEEccChhhhHHHHH
Confidence 99999999999999999999999999999983378999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEEcCCCCC-CCCeEEeecCccCCCCC-CCeEecCCchhhhHHHHHHHHHhhcCeeEEEEeeeeccccchh
Q 015637 177 KHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQR 254 (403)
Q Consensus 177 ~hl~aGakkVIIsaps~~-dvp~vV~gVN~~~~~~~-~~IISnaSCTTn~Lap~lk~L~~~fGI~~~~~TTiha~tg~q~ 254 (403)
.|+++|||||++|+|+++ ++||||||||++.|++. ++||||||||||||+|++|+|||+|||++++|||||+||++|+
T Consensus 184 ~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTTNcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~ 263 (442)
T PLN02237 184 KHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQR 263 (442)
T ss_pred HHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEEEeccCCcc
Confidence 999999999999999886 68999999999999876 7899999999999999999999999999999999999999999
Q ss_pred hhhhchhhhhhhHhhhcccCCCCCChHHHHHHhccccCCceeEEEEecccccccEEEEEEEEcc-CCCHHHHHHHHHhcc
Q 015637 255 LLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSK-KTFAEEVNAAFRESA 333 (403)
Q Consensus 255 ~~D~~~~d~r~~r~~a~NIIP~~tGaakav~kVlPeL~gkl~~~avRVPv~~gs~~dl~v~~~k-~~s~eeI~~al~~aa 333 (403)
++|.+|+||||+|++++||||++||++|++++|||+|+|||+|+++||||++||++||++++++ ++++||||++|++++
T Consensus 264 ~~D~~h~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~g~A~RVPt~nvS~vDLt~~l~k~~~t~eein~~~k~aa 343 (442)
T PLN02237 264 LLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAA 343 (442)
T ss_pred cccCCCcccccccccccccccCCcchhhhhceecccCCCceeeEEEecccCCceEEEEEEEeCCCCCCHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cccCcCcccccCCCceeecCCCCCcceeeeCCCccccCCceEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 015637 334 DNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 402 (403)
Q Consensus 334 ~~~lkgil~~~~~p~VS~D~~~~~~s~i~d~~~~~~~~~~~~K~~~WyDNE~gys~r~vdl~~~~~~~~ 402 (403)
+++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+|+++||||||||||||+||+.||.++|
T Consensus 344 ~~~lkgil~y~~~plVS~Df~~~~~Ssi~D~~~t~v~~~~~vKv~aWYDNEwGys~R~~dl~~~~~~~~ 412 (442)
T PLN02237 344 DGPLKGILAVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAAKW 412 (442)
T ss_pred ccccCCeeeeeCCceeeeeecCCCcceEEEcccCEEeCCCEEEEEEEeCCchhHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999998764
No 2
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=5.1e-122 Score=930.06 Aligned_cols=394 Identities=86% Similarity=1.314 Sum_probs=373.1
Q ss_pred ccccccccccCCCcccccccccccCCCCCCCCC-CCcchhhhhhhhhccCCCccccccccccCceeEEEEccChhHHHHH
Q 015637 6 LSVAKSALQGNGKGFSEFSGLRNSASLPFGRKS-SDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFL 84 (403)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ikVaInGfGrIGr~vl 84 (403)
++++++++|+.+++|++|+|||++++.++++.. +++| ++.|+.++.++ ..+.+..++|++||||||||||||.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~kVaInGfGrIGR~vl 76 (395)
T PLN03096 1 FSAAKPSLQAGSKGFSEFSGLKSSSAVTFGKRSDSLDF---VVFATSAVSSS-GGARRAVTEAKIKVAINGFGRIGRNFL 76 (395)
T ss_pred CCccchhhhcccCcccccccccccCcccccccccchhh---hhhhhhhhhcc-ccccccccccccEEEEECcCHHHHHHH
Confidence 367889999999999999999998888887655 4445 77777777666 778888999999999999999999999
Q ss_pred HHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCCCCCCCCCCcCccEEee
Q 015637 85 RCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIE 164 (403)
Q Consensus 85 r~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~dp~~i~w~~~gvDiV~e 164 (403)
|+|++++.+.++|++|||+.++++++|||+|||+||+|+++++..+++.|.|+|++|.+++++||+++||++.|+|||||
T Consensus 77 r~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~dp~~~~w~~~gvDiVie 156 (395)
T PLN03096 77 RCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIE 156 (395)
T ss_pred HHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcCCcccccccccCCCEEEE
Confidence 99998744469999999999999999999999999999999973478999999999999999999999999999999999
Q ss_pred CCCCcCCHhhHHHHHHcCCCeEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCchhhhHHHHHHHHHhhcCeeEEEEe
Q 015637 165 GTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMT 244 (403)
Q Consensus 165 ~tG~f~s~~~a~~hl~aGakkVIIsaps~~dvp~vV~gVN~~~~~~~~~IISnaSCTTn~Lap~lk~L~~~fGI~~~~~T 244 (403)
|||.|.+++++++|+++|||||+||+|.++++||||||||++.|++.++||||||||||||+|++|+|||+|||++++||
T Consensus 157 ~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn~LAp~lkvL~~~fGI~~g~mT 236 (395)
T PLN03096 157 GTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNCLAPFVKVLDQKFGIIKGTMT 236 (395)
T ss_pred CcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHHHHHHHHHHHHHHhcCeeEEEEE
Confidence 99999999999999999999999999987778999999999999877889999999999999999999999999999999
Q ss_pred eeeccccchhhhhhchhhhhhhHhhhcccCCCCCChHHHHHHhccccCCceeEEEEecccccccEEEEEEEEccCCCHHH
Q 015637 245 TTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEE 324 (403)
Q Consensus 245 Tiha~tg~q~~~D~~~~d~r~~r~~a~NIIP~~tGaakav~kVlPeL~gkl~~~avRVPv~~gs~~dl~v~~~k~~s~ee 324 (403)
|||+||++|+++|.+|+|+||+|++++||||++||++|+++||||+|+||++++|+||||++||++||++++++++++||
T Consensus 237 TiHa~T~~Q~llD~~~~d~rr~Raaa~NiIPtsTGaakav~kVlP~L~gkl~g~avRVPv~~gs~~dltv~~~~~~t~ee 316 (395)
T PLN03096 237 TTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVEKKTFAEE 316 (395)
T ss_pred EEEccccccccccCCCCccccchhhhccccccCCCcchhhhhcccccCCcEEEEEEEccccceEEEEEEEEECCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccCcCcccccCCCceeecCCCCCcceeeeCCCccccCCceEEEEEEecCCcchhhhHhHHHHHHhhcCC
Q 015637 325 VNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 403 (403)
Q Consensus 325 I~~al~~aa~~~lkgil~~~~~p~VS~D~~~~~~s~i~d~~~~~~~~~~~~K~~~WyDNE~gys~r~vdl~~~~~~~~~ 403 (403)
|+++|+++++++|||||+|+++|+||+||+|++||+|||+.+|++++++++|+++||||||||||||+||+.+|.++|+
T Consensus 317 v~~al~~aa~~~l~gil~~~~~p~VS~Df~~~~~Ssi~d~~~t~v~~~~~vKv~~WYDNE~Gys~r~~dl~~~~~~~~~ 395 (395)
T PLN03096 317 VNAAFRDAAEKELKGILAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLADIVANKWK 395 (395)
T ss_pred HHHHHHhhhhccccceEEEeCCCEeeeeecCCCCceEEEcccCEEeCCCEEEEEEEecCchhHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988763
No 3
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.7e-119 Score=896.66 Aligned_cols=335 Identities=47% Similarity=0.789 Sum_probs=320.6
Q ss_pred CceeEEEEccChhHHHHHHHHHcCC--CCCceEEEEec-CCChhHHhhhccccceecccCcceeee--------cCCeEE
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRK--DSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPV--------GTDGIS 135 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~--~~~~evvaInd-~~~~~~~a~ll~yDS~~G~f~~~v~~~--------~~~~l~ 135 (403)
|++||||||||||||.++|++.+++ .++++|||||| ++++++++|||||||+||+|+++++ . +++.|.
T Consensus 2 m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~-~~~~~~~~~~~~~l~ 80 (361)
T PTZ00434 2 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVE-TTKSSPSVKTDDVLV 80 (361)
T ss_pred CceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCcee-ecccccccccCCEEE
Confidence 6789999999999999999988752 13599999999 7899999999999999999999998 6 788999
Q ss_pred ECCEEEEEE-ecCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCCCCCCeEEeecCccCCCC-CCC
Q 015637 136 VDGKVIQVV-SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DEP 213 (403)
Q Consensus 136 i~G~~I~v~-~~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~~dvp~vV~gVN~~~~~~-~~~ 213 (403)
+||++|.++ +++||+++||+++|+|||+||||.|.+++.++.|+++||||||||+|++++.|+||+||||+.|++ .++
T Consensus 81 ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~~~ 160 (361)
T PTZ00434 81 VNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEHH 160 (361)
T ss_pred ECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCcccCc
Confidence 999999986 999999999999999999999999999999999999999999999998865689999999999997 578
Q ss_pred eEecCCchhhhHHHHHHHH-HhhcCeeEEEEeeeeccccchhhhhhc-hhhhhhhHhhhcccCCCCCChHHHHHHhcccc
Q 015637 214 IISNASCTTNCLAPFVKVL-DQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVALVLPAL 291 (403)
Q Consensus 214 IISnaSCTTn~Lap~lk~L-~~~fGI~~~~~TTiha~tg~q~~~D~~-~~d~r~~r~~a~NIIP~~tGaakav~kVlPeL 291 (403)
||||+|||||||+|++|+| ||+|||++|+|||+|+||++|+++|.+ |+||||+|++++||||++||++|++++|||+|
T Consensus 161 IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L 240 (361)
T PTZ00434 161 VVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPST 240 (361)
T ss_pred EEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccCccCCcchhhhhceecccc
Confidence 9999999999999999999 799999999999999999999999988 69999999999999999999999999999999
Q ss_pred CCceeEEEEecccccccEEEEEEEEccCCCHHHHHHHHHhcccccCcCcccccCCCceeecCCCCCcceeeeCCCccccC
Q 015637 292 KGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMG 371 (403)
Q Consensus 292 ~gkl~~~avRVPv~~gs~~dl~v~~~k~~s~eeI~~al~~aa~~~lkgil~~~~~p~VS~D~~~~~~s~i~d~~~~~~~~ 371 (403)
+|||+|+++||||++||++||+++++|++++||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++
T Consensus 241 ~GKl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k~aa~~~lkgIl~y~~~plVS~Df~g~~~Ssi~D~~~t~v~~ 320 (361)
T PTZ00434 241 KGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQTYMKGILGFTDDELVSADFINDNRSSIYDSKATLQNN 320 (361)
T ss_pred CCceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHHHhhhccccCcccccCCCccccccCCCCCCeEEEhhhCeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ----CceEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 015637 372 ----DDMVKVIAWYDNEWGYSQRVVDLADIVANNW 402 (403)
Q Consensus 372 ----~~~~K~~~WyDNE~gys~r~vdl~~~~~~~~ 402 (403)
++++|+++||||||||||||+||+.||.+.+
T Consensus 321 ~~~~~~~vKv~~WYDNEwGys~Rl~dl~~~~~~~~ 355 (361)
T PTZ00434 321 LPGERRFFKIVSWYDNEWGYSHRVVDLVRYMAAKD 355 (361)
T ss_pred cCCCCCEEEEEEEecCchHHHHHHHHHHHHHHhcc
Confidence 4899999999999999999999999997654
No 4
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=1.3e-114 Score=861.62 Aligned_cols=330 Identities=48% Similarity=0.808 Sum_probs=319.6
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEec
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~ 146 (403)
|++||||||||||||.++|++.+++ +++||||||+.++++++|||||||+||+|+++++ .+++.|.|+|+.|.++++
T Consensus 1 m~~~i~inGfGRIGr~~~r~~~~~~--~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~-~~~~~l~v~g~~I~v~~~ 77 (331)
T PRK15425 1 MTIKVGINGFGRIGRIVFRAAQKRS--DIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAE 77 (331)
T ss_pred CceEEEEEeeChHHHHHHHHHHHCC--CCEEEEEecCCCHHHHHHHHccccCCCCcCCcEE-ecCCEEEECCeEEEEEEc
Confidence 5689999999999999999988764 4999999999999999999999999999999999 788999999999999999
Q ss_pred CCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCchhhhHH
Q 015637 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLA 226 (403)
Q Consensus 147 ~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~~dvp~vV~gVN~~~~~~~~~IISnaSCTTn~La 226 (403)
+||+++||+++|+|+||||||.|++++++++|+++|||+|++|+|+++++|+||||||++.|+. ++||||||||||||+
T Consensus 78 ~dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~-~~IISnaSCtTn~La 156 (331)
T PRK15425 78 RDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG-QDIVSNASCTTNCLA 156 (331)
T ss_pred CChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCC-CCEEECCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999998767899999999999975 789999999999999
Q ss_pred HHHHHHHhhcCeeEEEEeeeeccccchhhhhhc-hhhhhhhHhhhcccCCCCCChHHHHHHhccccCCceeEEEEecccc
Q 015637 227 PFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTP 305 (403)
Q Consensus 227 p~lk~L~~~fGI~~~~~TTiha~tg~q~~~D~~-~~d~r~~r~~a~NIIP~~tGaakav~kVlPeL~gkl~~~avRVPv~ 305 (403)
|++|+||++|||+++.||||||||++|+++|.+ ++|+|++|++++||||++||++++++||||+|+||++|+|+||||+
T Consensus 157 pvlk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av~kIlP~L~gkl~g~avRVPv~ 236 (331)
T PRK15425 157 PLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTP 236 (331)
T ss_pred HHHHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchHHHHhhccccCCeEEEEEEEeccc
Confidence 999999999999999999999999999999976 5899999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEEEccCCCHHHHHHHHHhcccccCcCcccccCCCceeecCCCCCcceeeeCCCccccCCceEEEEEEecCCc
Q 015637 306 NVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEW 385 (403)
Q Consensus 306 ~gs~~dl~v~~~k~~s~eeI~~al~~aa~~~lkgil~~~~~p~VS~D~~~~~~s~i~d~~~~~~~~~~~~K~~~WyDNE~ 385 (403)
+||++||++++++++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++++|+++||||||
T Consensus 237 ~gs~~dltv~l~~~~t~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~ssi~d~~~t~v~~~~~~k~~~WyDNE~ 316 (331)
T PRK15425 237 NVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNET 316 (331)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHHHHhhccccccccccCCcEeeeecCCCCcceEEEcccCEEecCCEEEEEEEecCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHhHHHHHHhh
Q 015637 386 GYSQRVVDLADIVAN 400 (403)
Q Consensus 386 gys~r~vdl~~~~~~ 400 (403)
||||||+||+.||.+
T Consensus 317 gys~r~~d~~~~~~~ 331 (331)
T PRK15425 317 GYSNKVLDLIAHISK 331 (331)
T ss_pred hHHHHHHHHHHHHhC
Confidence 999999999999853
No 5
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=2.5e-114 Score=860.73 Aligned_cols=333 Identities=73% Similarity=1.150 Sum_probs=321.7
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~d 148 (403)
+||||||||||||.++|++.++++++++||+|||+.++++++|||||||+||+|+++++ .+++.|.|||++|.+++++|
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~-~~~~~l~v~g~~I~v~~~~d 80 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADIS-ADENSITVNGKTIKCVSDRN 80 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEE-EcCCEEEECCEEEEEEEcCC
Confidence 69999999999999999988763235999999999999999999999999999999999 88999999999999999999
Q ss_pred CCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCCC-CCCeEEeecCccCCCC-CCCeEecCCchhhhHH
Q 015637 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKP-DEPIISNASCTTNCLA 226 (403)
Q Consensus 149 p~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~~-dvp~vV~gVN~~~~~~-~~~IISnaSCTTn~La 226 (403)
|+++||+++|+|+||||||.|+++++++.|+++|||||++|+|+++ |+||||||||++.|++ .++||||||||||||+
T Consensus 81 p~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~La 160 (337)
T PRK07403 81 PLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCLA 160 (337)
T ss_pred cccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999876 5799999999999985 4789999999999999
Q ss_pred HHHHHHHhhcCeeEEEEeeeeccccchhhhhhchhhhhhhHhhhcccCCCCCChHHHHHHhccccCCceeEEEEeccccc
Q 015637 227 PFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPN 306 (403)
Q Consensus 227 p~lk~L~~~fGI~~~~~TTiha~tg~q~~~D~~~~d~r~~r~~a~NIIP~~tGaakav~kVlPeL~gkl~~~avRVPv~~ 306 (403)
|++|+||++|||++++||||||||++|+++|.+|+||||+|++++||||++||++|++++++|+|+|||+|+|+||||++
T Consensus 161 p~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~~~d~r~~raaa~NiIPt~tGaakav~~vlP~L~gki~g~avRVPt~~ 240 (337)
T PRK07403 161 PIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASHRDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRVPTPN 240 (337)
T ss_pred HHHHHHHHhcCeeEEEEEEEeeecCCcccccccccccccccccccccccCCcchhhhhhhcCcccCCcEEEEEEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEEEccCCCHHHHHHHHHhcccccCcCcccccCCCceeecCCCCCcceeeeCCCccccCCceEEEEEEecCCcc
Q 015637 307 VSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWG 386 (403)
Q Consensus 307 gs~~dl~v~~~k~~s~eeI~~al~~aa~~~lkgil~~~~~p~VS~D~~~~~~s~i~d~~~~~~~~~~~~K~~~WyDNE~g 386 (403)
+|++||++++++++++|||+++|+++++++|||||+|+++|+||+||+||+||+|||+.+|++++++|+|+++|||||||
T Consensus 241 vs~~dl~v~l~k~~t~eeI~~~~~~as~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~~~~k~~~WyDNE~G 320 (337)
T PRK07403 241 VSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDLPLVSSDYRGTDASSIVDASLTMVMGGDMVKVIAWYDNEWG 320 (337)
T ss_pred cEEEEEEEEECCCCCHHHHHHHHHHHhhCccccccCeecCCEeeeeecCCCCCEEEEcccCEEecCCEEEEEEEecCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhHHHHHHhhcC
Q 015637 387 YSQRVVDLADIVANNW 402 (403)
Q Consensus 387 ys~r~vdl~~~~~~~~ 402 (403)
|||||+||+.||.++.
T Consensus 321 ys~r~~dl~~~~~~~~ 336 (337)
T PRK07403 321 YSQRVVDLAELVARKW 336 (337)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999998754
No 6
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2e-114 Score=861.99 Aligned_cols=333 Identities=47% Similarity=0.788 Sum_probs=322.6
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec-CCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEe
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd-~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~ 145 (403)
|++||||||||||||.++|++.+++ +++|||||| +.++++++|||||||+||+|+++++ .+++.|.+||++|++++
T Consensus 1 m~~ki~INGfGRIGr~v~r~~~~~~--~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~-~~~~~l~i~g~~i~~~~ 77 (337)
T PTZ00023 1 MVVKLGINGFGRIGRLVFRAALERE--DVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVS-VTDGFLMIGSKKVHVFF 77 (337)
T ss_pred CceEEEEECcChHHHHHHHHHHhcC--CeEEEEecCCCCChHHhhhhheeecCCCCCCCcEE-ecCCEEEECCeEEEEEe
Confidence 6689999999999999999988764 499999999 7899999999999999999999999 78999999999999999
Q ss_pred cCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCchhhhH
Q 015637 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 225 (403)
Q Consensus 146 ~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~~dvp~vV~gVN~~~~~~~~~IISnaSCTTn~L 225 (403)
++||.++||++.|+|+||||||.|+++++++.|+++|||+|++|+|.++++|+||||||++.|+..++||||||||||||
T Consensus 78 ~~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~L 157 (337)
T PTZ00023 78 EKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCL 157 (337)
T ss_pred CCChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHH
Confidence 99999999999999999999999999999999999999999999998777899999999999987778999999999999
Q ss_pred HHHHHHHHhhcCeeEEEEeeeeccccchhhhhhc---hhhhhhhHhhhcccCCCCCChHHHHHHhccccCCceeEEEEec
Q 015637 226 APFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS---HRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRV 302 (403)
Q Consensus 226 ap~lk~L~~~fGI~~~~~TTiha~tg~q~~~D~~---~~d~r~~r~~a~NIIP~~tGaakav~kVlPeL~gkl~~~avRV 302 (403)
+|++|+||++|||+++.||||||+|.+|.++|.+ ++|||++|++++||||++||++|+++||||+|+||++++|+||
T Consensus 158 ap~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkl~g~avRV 237 (337)
T PTZ00023 158 APLAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRV 237 (337)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcchhhhheecccCCcEEEEEEEe
Confidence 9999999999999999999999999999999965 5899999999999999999999999999999999999999999
Q ss_pred ccccccEEEEEEEEccCCCHHHHHHHHHhcccccCcCcccccCCCceeecCCCCCcceeeeCCCccccCCceEEEEEEec
Q 015637 303 PTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYD 382 (403)
Q Consensus 303 Pv~~gs~~dl~v~~~k~~s~eeI~~al~~aa~~~lkgil~~~~~p~VS~D~~~~~~s~i~d~~~~~~~~~~~~K~~~WyD 382 (403)
||++||++||++++++++++|||+++|+++++++|||||+|+++|+||+||+||+||+|||+.+|++++++|+|+++|||
T Consensus 238 Pt~~~s~~dltv~l~k~vt~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~v~~~~~~k~~~WyD 317 (337)
T PTZ00023 238 PVPDVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPLKGILGYTDDEVVSSDFVHDKRSSIFDVKAGIALNDTFVKLVSWYD 317 (337)
T ss_pred cccCeEEEEEEEEECCCCCHHHHHHHHHHHhcccccCCcCccCCCeeeeecCCCCCCeEEEcccCeEecCCEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhHhHHHHHHhhcC
Q 015637 383 NEWGYSQRVVDLADIVANNW 402 (403)
Q Consensus 383 NE~gys~r~vdl~~~~~~~~ 402 (403)
|||||||||+||+.+|.+|+
T Consensus 318 NE~gys~r~~d~~~~~~~~~ 337 (337)
T PTZ00023 318 NEWGYSNRLLDLAHYITQKY 337 (337)
T ss_pred CchhHHHHHHHHHHHHhhcC
Confidence 99999999999999998875
No 7
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=8e-113 Score=851.04 Aligned_cols=333 Identities=57% Similarity=0.889 Sum_probs=321.5
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEec
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~ 146 (403)
|++||||||||||||.++|++.+++ +++||+|||+.++++++|||||||+||+|+++++ .+++.|.|||+.|.++++
T Consensus 1 m~~ki~INGfGRIGR~~~r~~~~~~--~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~-~~~~~l~v~g~~I~v~~~ 77 (343)
T PRK07729 1 MKTKVAINGFGRIGRMVFRKAIKES--AFEIVAINASYPSETLAHLIKYDTVHGKFDGTVE-AFEDHLLVDGKKIRLLNN 77 (343)
T ss_pred CceEEEEECcChHHHHHHHHHhhcC--CcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEE-ecCCEEEECCEEEEEEEc
Confidence 6789999999999999999988764 4999999999999999999999999999999999 889999999999999999
Q ss_pred CCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCCCCCCeEEeecCccCCCC-CCCeEecCCchhhhH
Q 015637 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCL 225 (403)
Q Consensus 147 ~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~~dvp~vV~gVN~~~~~~-~~~IISnaSCTTn~L 225 (403)
+||+++||++.|+|+||||||.|+++++++.|+++|||+|++|+|++++++++|||||++.|++ .++||||||||||||
T Consensus 78 ~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~L 157 (343)
T PRK07729 78 RDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCL 157 (343)
T ss_pred CChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHH
Confidence 9999999999999999999999999999999999999999999998764456699999999987 478999999999999
Q ss_pred HHHHHHHHhhcCeeEEEEeeeeccccchhhhhhchhhhhhhHhhhcccCCCCCChHHHHHHhccccCCceeEEEEecccc
Q 015637 226 APFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTP 305 (403)
Q Consensus 226 ap~lk~L~~~fGI~~~~~TTiha~tg~q~~~D~~~~d~r~~r~~a~NIIP~~tGaakav~kVlPeL~gkl~~~avRVPv~ 305 (403)
+|++|+||++|||++++|||||++|++|+++|.+++|||++|++++||||++||+++++++|||+|+|||+|+|+||||+
T Consensus 158 ap~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~~~d~rr~R~a~~niiPtstgaa~ai~~viP~l~gkl~g~avRVPt~ 237 (343)
T PRK07729 158 APVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPHKDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTP 237 (343)
T ss_pred HHHHHHHHHhcCeeEEEEEEEecccCcccccccchhhhhcccccccceecCCCcchhhHHHhccccCCeEEEEEEEeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEEEccCCCHHHHHHHHHhcccccCcCcccccCCCceeecCCCCCcceeeeCCCccccCCceEEEEEEecCCc
Q 015637 306 NVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEW 385 (403)
Q Consensus 306 ~gs~~dl~v~~~k~~s~eeI~~al~~aa~~~lkgil~~~~~p~VS~D~~~~~~s~i~d~~~~~~~~~~~~K~~~WyDNE~ 385 (403)
++|++||++++++++++|||+++|+++++++|||||+|+++|+||+||+|++||+|||+.+|++++++|+|+++||||||
T Consensus 238 ~~s~~dltv~l~k~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~~~~K~~~WYDNE~ 317 (343)
T PRK07729 238 NVSLVDLVVDVKRDVTVEEINEAFKTAANGALKGILEFSEEPLVSIDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEW 317 (343)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHHHHhhCchhhccCccCCCccccccCCCCcceEEEcccCeEecCCEEEEEEEecCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHhHHHHHHhhcC
Q 015637 386 GYSQRVVDLADIVANNW 402 (403)
Q Consensus 386 gys~r~vdl~~~~~~~~ 402 (403)
||||||+||+.||.+++
T Consensus 318 Gys~r~~dl~~~~~~~~ 334 (343)
T PRK07729 318 GYSCRVVDLVTLVADEL 334 (343)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999998754
No 8
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=8.3e-111 Score=852.57 Aligned_cols=328 Identities=49% Similarity=0.823 Sum_probs=317.5
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec-CCChhHHhhhccccceecccCcceeee-cCCeEEECCEEEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPV-GTDGISVDGKVIQVVSN 146 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd-~~~~~~~a~ll~yDS~~G~f~~~v~~~-~~~~l~i~G~~I~v~~~ 146 (403)
+||||||||||||.++|++.+++ +++||+||| +.++++++|||||||+||+|+++++ . +++.|.|+|++|.++++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~--~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~-~~~~~~l~~~G~~I~V~~~ 162 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRD--DIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTIN-VVDDSTLEINGKQIKVTSK 162 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcC--CcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEE-EccCCEEEECCEEEEEEec
Confidence 79999999999999999988653 499999999 7899999999999999999999998 5 78899999999999999
Q ss_pred CCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCchhhhHH
Q 015637 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLA 226 (403)
Q Consensus 147 ~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~~dvp~vV~gVN~~~~~~~~~IISnaSCTTn~La 226 (403)
+||+++||+++|+||||||||.|+++++++.|+++||||||||+|++ |+|+||||||++.|++.++||||||||||||+
T Consensus 163 ~dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~-dvPlvV~gVN~~~l~~~~~IISnaSCTTn~La 241 (421)
T PLN02272 163 RDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSA-DAPMFVVGVNEKTYKPNMNIVSNASCTTNCLA 241 (421)
T ss_pred CCcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCC-CCCeEEeccCHHHhCCCCCeeeCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999976 58999999999999877789999999999999
Q ss_pred HHHHHHHhhcCeeEEEEeeeeccccchhhhhhc-hhhhhhhHhhhcccCCCCCChHHHHHHhccccCCceeEEEEecccc
Q 015637 227 PFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTP 305 (403)
Q Consensus 227 p~lk~L~~~fGI~~~~~TTiha~tg~q~~~D~~-~~d~r~~r~~a~NIIP~~tGaakav~kVlPeL~gkl~~~avRVPv~ 305 (403)
|++||||++|||++++|||||+||++|+++|.+ ++|+|++|++++||||++||++|+++||||+|+||++++|+||||+
T Consensus 242 p~lk~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaakav~kVLP~L~gkl~gtaVRVPv~ 321 (421)
T PLN02272 242 PLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTP 321 (421)
T ss_pred HHHHHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccchhhhhcccccCCcEEEEEEEeccC
Confidence 999999999999999999999999999999976 6899999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEEEccCCCHHHHHHHHHhcccccCcCcccccCCCceeecCCCCCcceeeeCCCccccCCceEEEEEEecCCc
Q 015637 306 NVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEW 385 (403)
Q Consensus 306 ~gs~~dl~v~~~k~~s~eeI~~al~~aa~~~lkgil~~~~~p~VS~D~~~~~~s~i~d~~~~~~~~~~~~K~~~WyDNE~ 385 (403)
+||++||++++++++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++++|+++||||||
T Consensus 322 ~gs~~dltv~lek~~s~eev~~alk~a~~~~l~gil~y~~~~lVS~Df~~~~~ssi~D~~~t~~~~~~~vKv~~WYDNEw 401 (421)
T PLN02272 322 NVSVVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEW 401 (421)
T ss_pred ceEEEEEEEEECCCCCHHHHHHHHHHHhccccccccccccCCEeeeecCCCCCcEEEEcccCeEecCCEEEEEEEecCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHhHHHHHHhh
Q 015637 386 GYSQRVVDLADIVAN 400 (403)
Q Consensus 386 gys~r~vdl~~~~~~ 400 (403)
||||||+||+.+|.+
T Consensus 402 Gys~R~~dl~~~~~~ 416 (421)
T PLN02272 402 GYSNRVLDLIEHMAL 416 (421)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999999965
No 9
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=8.4e-110 Score=829.64 Aligned_cols=331 Identities=43% Similarity=0.725 Sum_probs=319.9
Q ss_pred eeEEEEccChhHHHHHHHHHcCCC-CCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~-~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
+||||||||||||.++|+|++++. +++++|||||+.++++++|||||||+||+|+++++ ++++.|.|+|++|.+++++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~-~~~~~l~v~g~~i~v~~~~ 80 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVR-QERDQLFVGDDAIRLLHER 80 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEE-ecCCEEEECCEEEEEEEcC
Confidence 699999999999999999998631 46999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCC-CCCCeEEeecCccCCCCCCCeEecCCchhhhHH
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK-GDIPTYVVGVNADAYKPDEPIISNASCTTNCLA 226 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~-~dvp~vV~gVN~~~~~~~~~IISnaSCTTn~La 226 (403)
+|+++||++.|+|+||||||.|.++++++.|+++|||+|++|+|++ +..++||||||++.|++.++||||||||||||+
T Consensus 81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn~La 160 (336)
T PRK13535 81 DIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNCII 160 (336)
T ss_pred CcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHHHHH
Confidence 9999999999999999999999999999999999999999999975 434699999999999877889999999999999
Q ss_pred HHHHHHHhhcCeeEEEEeeeeccccchhhhhhchhhhhhhHhhhcccCCCCCChHHHHHHhccccCCceeEEEEeccccc
Q 015637 227 PFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPN 306 (403)
Q Consensus 227 p~lk~L~~~fGI~~~~~TTiha~tg~q~~~D~~~~d~r~~r~~a~NIIP~~tGaakav~kVlPeL~gkl~~~avRVPv~~ 306 (403)
|++||||++|||++++||||||||++|+++|.+++|+|++|++++||||++||++++++||||+|+||++++|+||||++
T Consensus 161 p~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~~~d~rr~r~~a~NiIP~~tgaa~a~~kilP~l~gkv~~~avRVPv~~ 240 (336)
T PRK13535 161 PVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRVPTIN 240 (336)
T ss_pred HHHHHHHHhcCeeEEEEEEEEhhcCCcchhhchhhccccccEeeeccccCccHHHhhhhhcccCCCCcEEEEEEEeCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEEEccCCCHHHHHHHHHhcccccCcCcccccCCCceeecCCCCCcceeeeCCCccccCCceEEEEEEecCCcc
Q 015637 307 VSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWG 386 (403)
Q Consensus 307 gs~~dl~v~~~k~~s~eeI~~al~~aa~~~lkgil~~~~~p~VS~D~~~~~~s~i~d~~~~~~~~~~~~K~~~WyDNE~g 386 (403)
||++||++++++++++|||+++|+++++++|||||+|+++|+||+||+|++||+|||+.+|++++++|+|+++|||||||
T Consensus 241 gs~~dl~v~~~~~~t~eei~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE~g 320 (336)
T PRK13535 241 VTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTELPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWG 320 (336)
T ss_pred cEEEEEEEEECCCCCHHHHHHHHHHhhhccccccccccCCCccccccCCCCcceEEEcccCEEECCCEEEEEEEEcCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhHHHHHHhh
Q 015637 387 YSQRVVDLADIVAN 400 (403)
Q Consensus 387 ys~r~vdl~~~~~~ 400 (403)
|||||+||+.||.+
T Consensus 321 ys~r~~d~~~~~~~ 334 (336)
T PRK13535 321 FANRMLDTTLAMAA 334 (336)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999864
No 10
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-109 Score=814.97 Aligned_cols=333 Identities=59% Similarity=0.938 Sum_probs=323.6
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
++||||||||||||+++|++.+++ +++|||+|||+.++++++|||+|||+||+|+++++ .+++.+.|+|+.|+++.++
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~-~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~-~~~~~~~v~g~~I~v~~~~ 78 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERD-GDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVE-VKDDALVVNGKGIKVLAER 78 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCC-CCeEEEEEecCCCHHHHHHHHhhcccCCCCCCccc-ccCCeEEECCceEEEEecC
Confidence 379999999999999999999986 25999999999999999999999999999999998 8899999999999999999
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHc-CCCeEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCchhhhHH
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQA-GAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLA 226 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~a-GakkVIIsaps~~dvp~vV~gVN~~~~~~~~~IISnaSCTTn~La 226 (403)
||++|||+++|+|+|+||||.|+++|.+++|+++ |||||++|+|+++++|+||+|||++.|++.+.||||+|||||||+
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLa 158 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLA 158 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhhH
Confidence 9999999999999999999999999999999998 599999999998779999999999999988999999999999999
Q ss_pred HHHHHHHhhcCeeEEEEeeeeccccchhhhhhchhhhhhhHhhhcccCCCCCChHHHHHHhccccCCceeEEEEeccccc
Q 015637 227 PFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPN 306 (403)
Q Consensus 227 p~lk~L~~~fGI~~~~~TTiha~tg~q~~~D~~~~d~r~~r~~a~NIIP~~tGaakav~kVlPeL~gkl~~~avRVPv~~ 306 (403)
|++|+|+|+|||++++|||+|+||++|+++|.+|+||||+|++++||||++||++|++++|||+|+|||+|+++||||++
T Consensus 159 p~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph~~~rr~raa~~niIp~sTgaAkav~~VlP~L~gKl~g~A~RVPt~~ 238 (335)
T COG0057 159 PVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPHKDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPTPN 238 (335)
T ss_pred HHHHHHHHhcCeeEEEEEEEEcccCCCccccCcccchhhhccccCCCCcCCCcchhhhhhhCcccCCceeeEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEEEccCCCHHHHHHHHHhcccccCcCcccccCCCceeecCCCCCcceeeeCCCccccCCceEEEEEEecCCcc
Q 015637 307 VSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWG 386 (403)
Q Consensus 307 gs~~dl~v~~~k~~s~eeI~~al~~aa~~~lkgil~~~~~p~VS~D~~~~~~s~i~d~~~~~~~~~~~~K~~~WyDNE~g 386 (403)
+|++||++++++++++||||++|+++++++|||+++|+|+|+||+||+|++||+|||+.+|++++++|+|+++|||||||
T Consensus 239 vs~~dl~v~l~k~~t~eeIn~alk~as~~~lkg~~~y~e~~~Vs~D~~~~~~ssI~d~~~t~~~~~~~vk~~~wydNE~g 318 (335)
T COG0057 239 VSVVDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPHSSIFDASATIVLGGNLVKLVAWYDNEWG 318 (335)
T ss_pred cEEEEEEEEeCCCCCHHHHHHHHHHhhcccccceeeeEeccccccccCCCcceeEEEccceEeccCcEEEEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred hhhhHhHHHHHHhhcC
Q 015637 387 YSQRVVDLADIVANNW 402 (403)
Q Consensus 387 ys~r~vdl~~~~~~~~ 402 (403)
|++|++|+..++...+
T Consensus 319 ys~r~vD~~~~~~~~~ 334 (335)
T COG0057 319 YSNRVVDLLAMVAKAL 334 (335)
T ss_pred chHHHHHHHHHHhhhc
Confidence 9999999988877654
No 11
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=3.5e-109 Score=826.18 Aligned_cols=330 Identities=48% Similarity=0.811 Sum_probs=318.0
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec-CCChhHHhhhccccceecccCc-ceeee-cCCeEEECCEEEEE
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEA-DVKPV-GTDGISVDGKVIQV 143 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd-~~~~~~~a~ll~yDS~~G~f~~-~v~~~-~~~~l~i~G~~I~v 143 (403)
+++||||||||||||..+|.+.+++ ++++|+||| ..++++++|||||||+||+|++ +++ . +|+.|.++|++|.+
T Consensus 4 ~~lrVaI~G~GrIGr~~~r~~~~~~--~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~-~~~g~~l~~~g~~i~v 80 (338)
T PLN02358 4 KKIRIGINGFGRIGRLVARVVLQRD--DVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELK-VKDDKTLLFGEKPVTV 80 (338)
T ss_pred CceEEEEEeecHHHHHHHHHHhhCC--CcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEE-ECCCCEEEECCEEEEE
Confidence 3689999999999999999998765 499999999 6899999999999999999996 898 5 67789999999999
Q ss_pred EecCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCchhh
Q 015637 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTN 223 (403)
Q Consensus 144 ~~~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~~dvp~vV~gVN~~~~~~~~~IISnaSCTTn 223 (403)
++++||+++||++.|+||||||||.|+++++++.|+++|||||+||+|++ |+|+||||||++.|+..++||||||||||
T Consensus 81 ~~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~-dvp~iV~gVN~~~~~~~~~IISnasCTTn 159 (338)
T PLN02358 81 FGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEHEYKSDLDIVSNASCTTN 159 (338)
T ss_pred EEcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCC-CCCeEecCcCHHHhCCCCCEEECCCchHH
Confidence 99999999999999999999999999999999999999999999999987 58999999999999877889999999999
Q ss_pred hHHHHHHHHHhhcCeeEEEEeeeeccccchhhhhhc-hhhhhhhHhhhcccCCCCCChHHHHHHhccccCCceeEEEEec
Q 015637 224 CLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRV 302 (403)
Q Consensus 224 ~Lap~lk~L~~~fGI~~~~~TTiha~tg~q~~~D~~-~~d~r~~r~~a~NIIP~~tGaakav~kVlPeL~gkl~~~avRV 302 (403)
||+|++||||++|||++++|||||+||++|+++|.+ ++|+||+|++++||||++||++++++||||+|+||++|+|+||
T Consensus 160 ~Lap~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaaka~~kIlP~l~gkl~g~avRV 239 (338)
T PLN02358 160 CLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRV 239 (338)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhhhhhhccccCCCcEEEEEEEe
Confidence 999999999999999999999999999999999976 6999999999999999999999999999999999999999999
Q ss_pred ccccccEEEEEEEEccCCCHHHHHHHHHhcccccCcCcccccCCCceeecCCCCCcceeeeCCCccccCCceEEEEEEec
Q 015637 303 PTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYD 382 (403)
Q Consensus 303 Pv~~gs~~dl~v~~~k~~s~eeI~~al~~aa~~~lkgil~~~~~p~VS~D~~~~~~s~i~d~~~~~~~~~~~~K~~~WyD 382 (403)
||++||++||++++++++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++++|+++|||
T Consensus 240 Pv~~gs~~dl~v~~~~~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~vk~~~WyD 319 (338)
T PLN02358 240 PTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYD 319 (338)
T ss_pred eEcCeeEEEEEEEECCCCCHHHHHHHHHHHhhccccCcccccCCceeeeecCCCCcceEEEcccCeEecCCEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhHhHHHHHHhh
Q 015637 383 NEWGYSQRVVDLADIVAN 400 (403)
Q Consensus 383 NE~gys~r~vdl~~~~~~ 400 (403)
|||||||||+||+.+|.+
T Consensus 320 NE~gys~r~~dl~~~~~~ 337 (338)
T PLN02358 320 NEWGYSSRVVDLIVHMSK 337 (338)
T ss_pred CchhHHHHHHHHHHHHhc
Confidence 999999999999999864
No 12
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.7e-109 Score=824.41 Aligned_cols=329 Identities=27% Similarity=0.475 Sum_probs=313.7
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec-CCChhHHhhhccccceecccC-cceeeecCCeEEECC-EEEEE
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFE-ADVKPVGTDGISVDG-KVIQV 143 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd-~~~~~~~a~ll~yDS~~G~f~-~~v~~~~~~~l~i~G-~~I~v 143 (403)
|++||||||||||||.++|++.+++ ++|||+||| +.++++++|||+|||+||+|+ .+++ .+++.|.+|| ++|.+
T Consensus 1 m~~kv~INGfGRIGR~v~R~~~~~~--~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~-~~~~~l~i~g~~~i~~ 77 (342)
T PTZ00353 1 LPITVGINGFGPVGKAVLFASLTDP--LVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIR-VVGEQIVLNGTQKIRV 77 (342)
T ss_pred CCeEEEEECCChHHHHHHHHHHhcC--CcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEE-EcCCEEecCCCeEEEE
Confidence 6689999999999999999988764 499999999 689999999999999999996 6898 7889999999 89999
Q ss_pred EecCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCchhh
Q 015637 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTN 223 (403)
Q Consensus 144 ~~~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~~dvp~vV~gVN~~~~~~~~~IISnaSCTTn 223 (403)
+++++|+++||+++|+|+||||||.|.+++.+..|+++|||||||++|++ ++||||||||++.|++.++||||||||||
T Consensus 78 ~~~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~-d~p~vV~gVN~~~~~~~~~IISnaSCTTn 156 (342)
T PTZ00353 78 SAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSA-DAPTVMAGSNDERLSASLPVCCAGAPIAV 156 (342)
T ss_pred EecCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCC-CCCeEEecCChHHcCCCCCEEECCCHHHH
Confidence 99999999999999999999999999999999999999999999999997 48999999999999877789999999999
Q ss_pred hHHHHHHHHHhhcCeeEEEEeeeeccccchhhhhh-c--hhhhhhhHhhhcccCCCCCChHHHHHHhccccCCceeEEEE
Q 015637 224 CLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDA-S--HRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIAL 300 (403)
Q Consensus 224 ~Lap~lk~L~~~fGI~~~~~TTiha~tg~q~~~D~-~--~~d~r~~r~~a~NIIP~~tGaakav~kVlPeL~gkl~~~av 300 (403)
||+|++|+||++|||++++|||||+|+ +|...|. + ++|+|++|++++||||++||++++++||||+|+||++|+|+
T Consensus 157 ~LapvlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaakav~kVlP~L~gkl~g~av 235 (342)
T PTZ00353 157 ALAPVIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAF 235 (342)
T ss_pred HHHHHHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchhhhhhhccccCCcEEEEEE
Confidence 999999999999999999999999997 6777776 3 48999999999999999999999999999999999999999
Q ss_pred ecccccccEEEEEEEEccCCCHHHHHHHHHhcccccCcCcccccCCCceeecCCCCCcceeeeCCCcccc-CCceEEEEE
Q 015637 301 RVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVM-GDDMVKVIA 379 (403)
Q Consensus 301 RVPv~~gs~~dl~v~~~k~~s~eeI~~al~~aa~~~lkgil~~~~~p~VS~D~~~~~~s~i~d~~~~~~~-~~~~~K~~~ 379 (403)
||||++||++||++++++++++||||++|+++++++|||||+|+|+|+||+||+||+ |+|||+.+|+++ +++++|+++
T Consensus 236 RVPt~~vs~vdltv~~~k~~t~eein~~l~~aa~~~l~gil~~~~~~~VS~Df~~~~-~si~D~~~t~~~~~~~~vKv~~ 314 (342)
T PTZ00353 236 QVPVKKGCAIDMLVRTKQPVSKEVVDSALAEAASDRLNGVLCISKRDMISVDCIPNG-KLCYDATSSSSSREGEVHKMVL 314 (342)
T ss_pred EccccCeEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCeEEecCCCeeeeEeCCCC-CeEEEcccCeEEeCCCEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999 599999999995 889999999
Q ss_pred EecCCcchhhhHhHHHHHHhhc
Q 015637 380 WYDNEWGYSQRVVDLADIVANN 401 (403)
Q Consensus 380 WyDNE~gys~r~vdl~~~~~~~ 401 (403)
||||||||||||+||+.+|.+.
T Consensus 315 WYDNE~Gys~r~~dl~~~~~~~ 336 (342)
T PTZ00353 315 WFDVECYYAARLLSLVKQLHQI 336 (342)
T ss_pred EecCchHHHHHHHHHHHHHHhc
Confidence 9999999999999999999764
No 13
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=2.9e-109 Score=825.66 Aligned_cols=329 Identities=46% Similarity=0.761 Sum_probs=318.7
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec-CCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEe
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd-~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~ 145 (403)
|++||||||||||||.++|++.+++ +++|+++|| +.++++++|||||||+||+|+++++ ++|+.|.+||++|++++
T Consensus 1 m~ikigInG~GRiGr~v~r~~~~~~--~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~-~~g~~l~~~g~~i~v~~ 77 (334)
T PRK08955 1 MTIKVGINGFGRIGRLALRAAWDWP--ELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVT-AEGDAIVINGKRIRTTQ 77 (334)
T ss_pred CCeEEEEECcCHHHHHHHHHHHhCC--CcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEE-EcCCEEEECCEEEEEEe
Confidence 5689999999999999999988764 499999999 7899999999999999999999999 89999999999999999
Q ss_pred cCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCCC-CCCeEEeecCccCCCCC-CCeEecCCchhh
Q 015637 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPD-EPIISNASCTTN 223 (403)
Q Consensus 146 ~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~~-dvp~vV~gVN~~~~~~~-~~IISnaSCTTn 223 (403)
+++|++++|+ |+|+||||||.|.++++++.|+++|||+|++|+|+++ ++||||||||++.|++. ++||||||||||
T Consensus 78 ~~~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn 155 (334)
T PRK08955 78 NKAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTN 155 (334)
T ss_pred cCChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHH
Confidence 9999999997 9999999999999999999999999999999999875 57999999999999874 789999999999
Q ss_pred hHHHHHHHHHhhcCeeEEEEeeeeccccchhhhhhchhhhhhhHhhhcccCCCCCChHHHHHHhccccCCceeEEEEecc
Q 015637 224 CLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVP 303 (403)
Q Consensus 224 ~Lap~lk~L~~~fGI~~~~~TTiha~tg~q~~~D~~~~d~r~~r~~a~NIIP~~tGaakav~kVlPeL~gkl~~~avRVP 303 (403)
||+|++||||++|||++++|||||+||++|+++|.+++|+|++|++++||||++||++++++||||+|+||++++|+|||
T Consensus 156 ~Lap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~~d~r~~r~~a~NiIP~~tGaa~a~~kvlP~L~gkl~~~avRVP 235 (334)
T PRK08955 156 CLAPVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPHKDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVP 235 (334)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEeccCccccccCCCcccccchhheeccccccCCCccccceEccccCCcEEEEEEEec
Confidence 99999999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred cccccEEEEEEEEccCCCHHHHHHHHHhcccccCcCcccccCCCceeecCCCCCcceeeeCCCccccCCceEEEEEEecC
Q 015637 304 TPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDN 383 (403)
Q Consensus 304 v~~gs~~dl~v~~~k~~s~eeI~~al~~aa~~~lkgil~~~~~p~VS~D~~~~~~s~i~d~~~~~~~~~~~~K~~~WyDN 383 (403)
|++||++||++++++++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++++|+++||||
T Consensus 236 v~~gs~~dl~v~~~~~~s~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDN 315 (334)
T PRK08955 236 LANASLTDCVFEVERDTTVEEVNALLKEAAEGELKGILGYEERPLVSIDYKTDPRSSIVDALSTMVVNGTQVKLYAWYDN 315 (334)
T ss_pred cCCeEEEEEEEEECCCCCHHHHHHHHHHhcCCCcCceeccccCCcccceeCCCCchHheehhcCEEecCCEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhHhHHHHHHhh
Q 015637 384 EWGYSQRVVDLADIVAN 400 (403)
Q Consensus 384 E~gys~r~vdl~~~~~~ 400 (403)
||||||||+||+.+|..
T Consensus 316 E~gys~r~~dl~~~~~~ 332 (334)
T PRK08955 316 EWGYANRTAELARKVGL 332 (334)
T ss_pred chhHHHHHHHHHHHHhc
Confidence 99999999999999864
No 14
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=1e-108 Score=819.58 Aligned_cols=323 Identities=62% Similarity=0.958 Sum_probs=311.2
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCC-eEEECCE-EEEEEecC
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTD-GISVDGK-VIQVVSNR 147 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~-~l~i~G~-~I~v~~~~ 147 (403)
||||||||||||.++|++.++++++++||+|||+.++++++|||||||+||+|+++++ .+++ .|.|+|+ .|.+++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~-~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVT-ADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEE-ecCCceEEECCeEEEEEEecC
Confidence 7999999999999999988763235999999999999999999999999999999999 7788 7999999 99999999
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCchhhhHHH
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAP 227 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~~dvp~vV~gVN~~~~~~~~~IISnaSCTTn~Lap 227 (403)
+|+++||+++|+||||||||.|+++++++.|+++|||||++|+|+++++||||||||++.|+..++||||||||||||+|
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~Lap 159 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLAP 159 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999875589999999999998777899999999999999
Q ss_pred HHHHHHhhcCeeEEEEeeeeccccchhhhhhchhhhhhhHhhhcccCCCCCChHHHHHHhccccCCceeEEEEecccccc
Q 015637 228 FVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNV 307 (403)
Q Consensus 228 ~lk~L~~~fGI~~~~~TTiha~tg~q~~~D~~~~d~r~~r~~a~NIIP~~tGaakav~kVlPeL~gkl~~~avRVPv~~g 307 (403)
++|+||++|||+++.|||||++|++|+++|.+++|+|++|++++||||+++|++++++||||+|+||++++|+||||++|
T Consensus 160 ~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~~d~r~~r~~a~NiIP~~tg~ak~~~kvlP~L~gkv~~~avRVPv~~g 239 (327)
T TIGR01534 160 LAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPHKDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTPNV 239 (327)
T ss_pred HHHHHHHhcCeeEEEEEEEEeecCccccccCCCCCCcCceEeEeeeeccCCChHHHHhhccccCCCeEEEEEEEecccCe
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEEccCCCHHHHHHHHHhcccccCcCcccccCCCceeecCCCCCcceeeeCCCcccc--CCceEEEEEEecCCc
Q 015637 308 SVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVM--GDDMVKVIAWYDNEW 385 (403)
Q Consensus 308 s~~dl~v~~~k~~s~eeI~~al~~aa~~~lkgil~~~~~p~VS~D~~~~~~s~i~d~~~~~~~--~~~~~K~~~WyDNE~ 385 (403)
|++|+++++++++++|||+++|+++++++|||||+|+++|+||+||+|++||+|||+.+|+++ +++++|+++||||||
T Consensus 240 s~~dl~v~~~~~~t~eev~~al~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~~~~k~~~WyDNE~ 319 (327)
T TIGR01534 240 SLVDLVLNLEKDTTKEEVNAALKEAAEGSLKGVLGYTEDELVSSDFIGSPYSSIVDATATKVTGLGGSLVKVVAWYDNEW 319 (327)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHhhhhcccCceeeeeCCCeeeeecCCCCcceEEEcccCeEEcCCCCEEEEEEEeCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999995 489999999999999
Q ss_pred chhhhHhH
Q 015637 386 GYSQRVVD 393 (403)
Q Consensus 386 gys~r~vd 393 (403)
||||||+|
T Consensus 320 gys~r~~d 327 (327)
T TIGR01534 320 GYSNRVVD 327 (327)
T ss_pred eeeeEccC
Confidence 99999987
No 15
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=3.3e-107 Score=829.65 Aligned_cols=332 Identities=42% Similarity=0.662 Sum_probs=318.3
Q ss_pred ceeEEEEccChhHHHHHHHHHcCC--CCCceEEEEe----cCCChhHHhhhccccceecccCcceeeec--CCeEEECCE
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRK--DSPLEVVAIN----DTGGVKQASHLLKYDSTLGIFEADVKPVG--TDGISVDGK 139 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~--~~~~evvaIn----d~~~~~~~a~ll~yDS~~G~f~~~v~~~~--~~~l~i~G~ 139 (403)
+.||||||||||||.++|++.++. .++++||||| |+.++++++|||+|||+||+|+++++ .+ ++.|.+||+
T Consensus 127 ~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~-~~~~~~~liing~ 205 (477)
T PRK08289 127 PRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFNGTIT-VDEENNAIIANGN 205 (477)
T ss_pred CceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCCCceE-eecCCCEEEECCE
Confidence 569999999999999999998762 1359999995 57899999999999999999999998 54 788999999
Q ss_pred EEEEEecCCCCCCCCCCcCcc--EEeeCCCCcCCHhhHHHHHH-cCCCeEEEcCCCCCCCCeEEeecCccCCCCCCCeEe
Q 015637 140 VIQVVSNRNPVNLPWGDLGID--LVIEGTGVFVDREGAGKHIQ-AGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIIS 216 (403)
Q Consensus 140 ~I~v~~~~dp~~i~w~~~gvD--iV~e~tG~f~s~~~a~~hl~-aGakkVIIsaps~~dvp~vV~gVN~~~~~~~~~IIS 216 (403)
.|+++++++|+++||+++|+| +||||||.|.+++.+..|++ +||||||||+|+++++|+||||||++.|++.++|||
T Consensus 206 ~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~~IIS 285 (477)
T PRK08289 206 YIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIVS 285 (477)
T ss_pred EEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCCCEEE
Confidence 999999999999999999999 99999999999999999999 899999999999887899999999999987788999
Q ss_pred cCCchhhhHHHHHHHHHhhcCeeEEEEeeeeccccchhhhhhchhhhhhhHhhhcccCCCCCChHHHHHHhccccCCcee
Q 015637 217 NASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLN 296 (403)
Q Consensus 217 naSCTTn~Lap~lk~L~~~fGI~~~~~TTiha~tg~q~~~D~~~~d~r~~r~~a~NIIP~~tGaakav~kVlPeL~gkl~ 296 (403)
|||||||||+|++|+||++|||++++||||||||++|+++|.+|+++||+|++++||||++||++|+++||||+|+||++
T Consensus 286 nASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~hkd~RrgRaaa~NIIptsTGAAkAv~kVLP~L~GKlt 365 (477)
T PRK08289 286 AASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNYHKGDRRGRSAPLNMVITETGAAKAVAKALPELAGKLT 365 (477)
T ss_pred CCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhhhhcCcccceeeeeeEecCCChhhhhhhcccccCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccccEEEEEEEEccCCCHHHHHHHHHhcc-cccCcCcccccCC-CceeecCCCCCcceeeeCCCccccCCce
Q 015637 297 GIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA-DNELKGILSVCDE-PLVSVDFRCSDVSSTVDSSLTLVMGDDM 374 (403)
Q Consensus 297 ~~avRVPv~~gs~~dl~v~~~k~~s~eeI~~al~~aa-~~~lkgil~~~~~-p~VS~D~~~~~~s~i~d~~~~~~~~~~~ 374 (403)
|+|+||||++||++||++++++++++||||++|++++ +++|+|||+|+++ |+||+||+|++||+|||+.+|+++ +++
T Consensus 366 g~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk~aa~~~~L~gil~yt~~~~lVSsDfig~~~SsI~D~~~T~v~-g~~ 444 (477)
T PRK08289 366 GNAIRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQNQIDYTDSTEVVSSDFVGSRHAGVVDSQATIVN-GNR 444 (477)
T ss_pred EEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhhcCCccceeeecccCCeeeeeecCCCchhheehhccEEc-CCE
Confidence 9999999999999999999999999999999999999 5999999999999 799999999999999999999998 689
Q ss_pred EEEEEEecCCcchhhhHhHHHHHHhhc
Q 015637 375 VKVIAWYDNEWGYSQRVVDLADIVANN 401 (403)
Q Consensus 375 ~K~~~WyDNE~gys~r~vdl~~~~~~~ 401 (403)
+|+++||||||||||||+||+.+|.+.
T Consensus 445 vkv~~WYDNE~GYS~rvvdl~~~~~~~ 471 (477)
T PRK08289 445 AVLYVWYDNEFGYSCQVVRVMEQMAGV 471 (477)
T ss_pred EEEEEEecCchhHHHHHHHHHHHHHhc
Confidence 999999999999999999999999865
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=1.3e-105 Score=797.95 Aligned_cols=323 Identities=45% Similarity=0.770 Sum_probs=312.1
Q ss_pred eEEEEccChhHHHHHHHHHcCC-CCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCC
Q 015637 70 KVAINGFGRIGRNFLRCWHGRK-DSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~-~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~d 148 (403)
||||||||||||.++|+|.+++ .++|+|++|||+.+.++++|||+|||+||+|+++++ ++++.|.++|+.|+++++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~-~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVK-VDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEE-EeCCEEEECCeEEEEEEcCC
Confidence 6999999999999999999864 245999999999999999999999999999999999 89999999999999999999
Q ss_pred CCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCC-CCCCeEEeecCccCCCCCCCeEecCCchhhhHHH
Q 015637 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK-GDIPTYVVGVNADAYKPDEPIISNASCTTNCLAP 227 (403)
Q Consensus 149 p~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~-~dvp~vV~gVN~~~~~~~~~IISnaSCTTn~Lap 227 (403)
|+++||++.|+|+||||||.|.++++++.|+++||++|++|+|.+ +..++||||||++.|++.++||||||||||||+|
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~lap 159 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCIVP 159 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHHHH
Confidence 999999999999999999999999999999999999999999975 3235999999999998778899999999999999
Q ss_pred HHHHHHhhcCeeEEEEeeeeccccchhhhhhchhhhhhhHhhhcccCCCCCChHHHHHHhccccCCceeEEEEecccccc
Q 015637 228 FVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNV 307 (403)
Q Consensus 228 ~lk~L~~~fGI~~~~~TTiha~tg~q~~~D~~~~d~r~~r~~a~NIIP~~tGaakav~kVlPeL~gkl~~~avRVPv~~g 307 (403)
++|+||++|||+++.|||||++|++|+++|.+++|+|++|.+++||||++||++++++||||+|+||++++|+||||++|
T Consensus 160 ~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~~~d~r~~r~a~~NiIP~~t~~a~a~~kilP~L~gkl~~~avRVPv~~~ 239 (325)
T TIGR01532 160 LIKLLDDAIGIESGTITTIHSAMNDQQVIDAYHHDLRRTRAASQSIIPVDTKLARGIERLFPEFAGRFEAIAVRVPTVNV 239 (325)
T ss_pred HHHHHHHhcCeeEEEEEEEEhhcCCccccccchhhccccchHhhCeeeCCccHHHHHHHhCcccCCeEEEEEEEecccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEEccCCCHHHHHHHHHhcccccCcCcccccCCCceeecCCCCCcceeeeCCCccccCCceEEEEEEecCCcch
Q 015637 308 SVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGY 387 (403)
Q Consensus 308 s~~dl~v~~~k~~s~eeI~~al~~aa~~~lkgil~~~~~p~VS~D~~~~~~s~i~d~~~~~~~~~~~~K~~~WyDNE~gy 387 (403)
|++||++++++++++|||+++|+++++|+|||||+|+++|+||+||+|++||+|||+.+|++++++|+|+++||||||||
T Consensus 240 s~~dl~v~~~~~~~~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE~gy 319 (325)
T TIGR01532 240 TALDLSVTTKRDVKANEVNRVLREAAQGPLRGIVDYTELPLVSCDFNHDPHSAIVDGTQTRVSGPRLVKLLVWCDNEWGF 319 (325)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHhhccccccccccccCCccccccCCCCcceEEEcccCEEecCCEEEEEEEeCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhH
Q 015637 388 SQRVVD 393 (403)
Q Consensus 388 s~r~vd 393 (403)
||||+|
T Consensus 320 s~r~~d 325 (325)
T TIGR01532 320 ANRMLD 325 (325)
T ss_pred eeEccC
Confidence 999987
No 17
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-83 Score=611.07 Aligned_cols=283 Identities=49% Similarity=0.807 Sum_probs=269.4
Q ss_pred hHHHHHHHHHcCCCCCceEEEEec-CCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCCCCCCCCCCc
Q 015637 79 IGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDL 157 (403)
Q Consensus 79 IGr~vlr~l~~~~~~~~evvaInd-~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~dp~~i~w~~~ 157 (403)
|||.++ + +. ++++|+||| +++.+|++|+++|||+||+|+++++ .++.+++++|+.|.++++++|.+|+|.+.
T Consensus 1 ig~~~~---~-~~--~v~vv~indpfi~~~~~~y~~kydsthG~f~g~~k-~~~~~~i~~G~~i~~~~~~~p~~i~w~~~ 73 (285)
T KOG0657|consen 1 IGRLVL---Q-RN--SVDVVAINDPFIDLNYLAYMLKYDSTHGKFHGTVK-AENFKLIINGNPITIFQFRDPAKIPWGAK 73 (285)
T ss_pred CCcccc---c-cC--CcccccccCcccccccccccccccccCCcccccee-ecCCceeecCceEEeecccCcccCccccc
Confidence 577776 2 43 399999999 7899999999999999999999999 88999999999999999999999999999
Q ss_pred CccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCchhhhHHHHHHHHHhhcC
Q 015637 158 GIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFG 237 (403)
Q Consensus 158 gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~~dvp~vV~gVN~~~~~~~~~IISnaSCTTn~Lap~lk~L~~~fG 237 (403)
++|+|+|+||.|.+.+.+..|+++||||+|||+|++ |.||||+|||+++|+++..||||+|||||||+|+.|+|||+||
T Consensus 74 g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~-dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fg 152 (285)
T KOG0657|consen 74 GADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSA-DAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFG 152 (285)
T ss_pred cceeEeeccccccccccccccccccceEEEeccccC-CCCcccccccccccccccceeechhhhhccccchhheeccccc
Confidence 999999999999999999999999999999999998 4899999999999998777999999999999999999999999
Q ss_pred eeEEEEeeeeccccchhhhhh-chhhhhhhHhhhcccCCCCCChHHHHHHhccccCCceeEEEEecccccccEEEEEEEE
Q 015637 238 IIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQV 316 (403)
Q Consensus 238 I~~~~~TTiha~tg~q~~~D~-~~~d~r~~r~~a~NIIP~~tGaakav~kVlPeL~gkl~~~avRVPv~~gs~~dl~v~~ 316 (403)
|++++|||+|++|++|+++|. +.++||++|.+.|||||.+||++|+++|+||||+||++||++||||+ ++++||++++
T Consensus 153 I~EgLMtTvha~tatQktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeLngKLtGMAf~Vpt~-vsVvdl~~~~ 231 (285)
T KOG0657|consen 153 IMEGLMTTVHAITATQKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP-VSVVDLTCHL 231 (285)
T ss_pred cccccccceeeeccccccccCcccccccccchhhhccccccccHHHHHHHHhHHhhCccccceecCCcc-eEeeeeeccc
Confidence 999999999999999999995 56899999999999999999999999999999999999999999999 9999999999
Q ss_pred ccCCCHHHHHHHHHhcccccCcCcccccCCCceeecCCCCCcceeeeCCCccccCCceEEEEEEecCCcchhhhHhHHHH
Q 015637 317 SKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLAD 396 (403)
Q Consensus 317 ~k~~s~eeI~~al~~aa~~~lkgil~~~~~p~VS~D~~~~~~s~i~d~~~~~~~~~~~~K~~~WyDNE~gys~r~vdl~~ 396 (403)
++++++|+|+++++++++++||||| ||+ +| ++|||||||||+||+||+.
T Consensus 232 ~k~a~~ddikkvvk~~~~~~lkGIL--te~--------------------------~f---ISWYDNE~GYS~rVvDl~~ 280 (285)
T KOG0657|consen 232 EKPAKYDDIKKVVKLASEIPLKGIL--TEH--------------------------HF---ISWYDNEFGYSNRVVDLME 280 (285)
T ss_pred ccccchHHHHHHHHHhhcccccccc--ccc--------------------------ce---eeeeccccccchHHHHHHH
Confidence 9999999999999999999999999 777 34 8999999999999999999
Q ss_pred HHhhc
Q 015637 397 IVANN 401 (403)
Q Consensus 397 ~~~~~ 401 (403)
||+++
T Consensus 281 h~ask 285 (285)
T KOG0657|consen 281 HMASK 285 (285)
T ss_pred HHhcC
Confidence 99875
No 18
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=3.8e-54 Score=429.10 Aligned_cols=235 Identities=19% Similarity=0.269 Sum_probs=208.3
Q ss_pred EEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChh---HHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 71 VAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVK---QASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 71 VaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~---~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
|||||||||||+++|++.+++ +++||+||| .+++ +++|+++||+.|+.+...++ .+++.+.++|+
T Consensus 1 VaInG~GrIGr~varav~~~~--d~elVaVnD-~~~~~~a~lA~~lgyds~~~~~~~~~~-~~~~~l~v~g~-------- 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQD--DMKLVGVTK-TSPDFEAYRAKELGIPVYAASEEFIPR-FEEAGIEVAGT-------- 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCC--CcEEEEEec-CChHHHHHHHHHhCCCEEeecCCcceE-eccCceEecCC--------
Confidence 699999999999999998765 599999999 6787 78888889999844433566 56666777664
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCCC-CCCeEEeecCccCCCCCCCeEecCCchhhhHH
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPDEPIISNASCTTNCLA 226 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~~-dvp~vV~gVN~~~~~~~~~IISnaSCTTn~La 226 (403)
++++. .++|+|++|||.+..++.++.|+++|+|+|++++|+++ .+++||+|+|++.|.+.+ ||||+|||||||+
T Consensus 69 -~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~~-~vs~aSCtTn~La 143 (333)
T TIGR01546 69 -LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGKD-YVRVVSCNTTGLV 143 (333)
T ss_pred -HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcCc-eEEecCchHhhHH
Confidence 33443 27999999999999999999999999999999999876 358999999999998644 9999999999999
Q ss_pred HHHHHHHhhcCeeEEEEeeeeccccchhhhhhchhhhhhhHhhhcccCCC-CC---ChHHHHHHhccccCCceeEEEEec
Q 015637 227 PFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPT-ST---GAAKAVALVLPALKGKLNGIALRV 302 (403)
Q Consensus 227 p~lk~L~~~fGI~~~~~TTiha~tg~q~~~D~~~~d~r~~r~~a~NIIP~-~t---Gaakav~kVlPeL~gkl~~~avRV 302 (403)
|++|+|+++|||++++|||+|+ |++|+ |+||+| ++||||+ +| +.++++++|||+|+ ++|+++||
T Consensus 144 p~~~~L~~~fGI~~~~~Ttvh~-t~dq~-------d~rrgr--~~~IiP~~~t~ps~~a~av~~VlP~L~--i~g~AvrV 211 (333)
T TIGR01546 144 RTLNAINDYSKVDKVRAVMVRR-AADPN-------DVKKGP--INAIVPDPVTVPSHHGPDVQTVIPNLN--IETMAFVV 211 (333)
T ss_pred HHHHHHHHhcCeEEEEEEEEee-cCChh-------hhccCc--hhceEeCCCCCCCchHHHHHHcCCCCC--ccEEEEEe
Confidence 9999999999999999999996 99994 899998 6999999 44 56899999999997 99999999
Q ss_pred ccccccEEEEEEEEccCCCHHHHHHHHHhccc
Q 015637 303 PTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD 334 (403)
Q Consensus 303 Pv~~gs~~dl~v~~~k~~s~eeI~~al~~aa~ 334 (403)
||+++|++||++++++++++|||+++|+++++
T Consensus 212 Pt~~vs~~dl~v~l~~~~t~eeV~~~l~~~~r 243 (333)
T TIGR01546 212 PTTLMHVHSIMVELKKPVTKDDIIDILENTPR 243 (333)
T ss_pred CCCCcEEEEEEEEECCCCCHHHHHHHHHhCCc
Confidence 99999999999999999999999999999874
No 19
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=100.00 E-value=2.9e-50 Score=363.41 Aligned_cols=157 Identities=56% Similarity=0.868 Sum_probs=153.0
Q ss_pred HHHHHHHHHhhcCeeEEEEeeeeccccchhhhhhchhhhhhhHhhhcccCCCCCChHHHHHHhccccCCceeEEEEeccc
Q 015637 225 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPT 304 (403)
Q Consensus 225 Lap~lk~L~~~fGI~~~~~TTiha~tg~q~~~D~~~~d~r~~r~~a~NIIP~~tGaakav~kVlPeL~gkl~~~avRVPv 304 (403)
|+|++|+||++|||+++.|||+|++|++|+++|.+|+|||++|++++||||++||++|++++|||+|+||++|+++||||
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~~d~rrgr~a~~niip~~t~aa~av~~VlP~L~gki~g~a~rVPt 80 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPHKDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNGKITGMAVRVPT 80 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS--SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTTTEEEEEEEESS
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeeeccccccccccccccccccccccchhhhhhhhhccCcceeeEEeeee
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccEEEEEEEEccCCCHHHHHHHHHhcccccCcCcccccCCCceeecCCCCCcceeeeCCCccccCCceEEEEEEe
Q 015637 305 PNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWY 381 (403)
Q Consensus 305 ~~gs~~dl~v~~~k~~s~eeI~~al~~aa~~~lkgil~~~~~p~VS~D~~~~~~s~i~d~~~~~~~~~~~~K~~~Wy 381 (403)
+++|++||++++++++++|||+++|+++++++++||++|+|+|+||+||+|++||+|||+.++++++++++|+++||
T Consensus 81 ~~~s~~dl~~~l~k~~t~eeV~~~~~~aa~~~~~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~v~~~~~vkl~~WY 157 (157)
T PF02800_consen 81 PNVSLHDLTVELEKPVTKEEVNEALKQAARGPLKGILGYTEDPLVSSDFNGDRHSSIFDAEATIVVNGNLVKLFAWY 157 (157)
T ss_dssp SSEEEEEEEEEESSSS-HHHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGEEEEETTEEEEEEEE
T ss_pred cccCceEEEEecccchhhhhhhhhhhhhhHhhhhhhheecccceEEeccCCCceEEEEEhHHCeEECCCEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
No 20
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1e-47 Score=385.43 Aligned_cols=260 Identities=23% Similarity=0.285 Sum_probs=206.0
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhcc---ccceecccCcceeeecCCeEEECCEEEEEE
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK---YDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~---yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~ 144 (403)
++||||||+|+|||++++++.+++ +++|++|+|. ++++.+|+++ || .||+++...+...+..+.+.+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~--d~eLvav~d~-~~~~~~~la~~~G~~-~~~~~~~~~~~~~~~~i~V~~------ 70 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQP--DMELVGVAKT-KPDYEARVAVEKGYP-LYVADPEREKAFEEAGIPVAG------ 70 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCC--CcEEEEEECC-ChHHHHHHHHhcCCC-ccccCccccccccCCceEEcC------
Confidence 379999999999999999999875 5999999994 6889999888 34 456655443211222333332
Q ss_pred ecCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCCCCCC--eEEeecCccCCCCCCCeEecCCchh
Q 015637 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP--TYVVGVNADAYKPDEPIISNASCTT 222 (403)
Q Consensus 145 ~~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~~dvp--~vV~gVN~~~~~~~~~IISnaSCTT 222 (403)
+++++. .++|+||||||.+.+.+.++.|+++| ++||+++|+++++| +||||||++.+... ++|+||||||
T Consensus 71 ---~~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~~~~~~~~v~~vN~~~~~~~-~~v~~~sCtT 142 (341)
T PRK04207 71 ---TIEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKAEVAGVSFNALANYEEALGK-DYVRVVSCNT 142 (341)
T ss_pred ---ChhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCCCCCCCcEEeeECHHHhCCC-CcEEccChHH
Confidence 233332 27999999999999999999999999 78999988764433 47999999998753 4899999999
Q ss_pred hhHHHHHHHHHhhcCeeEEEEeeeeccccchhhhhhchhhhhhhHhhhcccCCCC----CChHHHHHHhccccCCceeEE
Q 015637 223 NCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTS----TGAAKAVALVLPALKGKLNGI 298 (403)
Q Consensus 223 n~Lap~lk~L~~~fGI~~~~~TTiha~tg~q~~~D~~~~d~r~~r~~a~NIIP~~----tGaakav~kVlPeL~gkl~~~ 298 (403)
|||+|+|||||++|||+++.|||||++|+. ++++ |++++||||.. +...+++++|+|+|+ ++++
T Consensus 143 ~~l~~~l~~L~~~fgI~~~~vTtv~a~td~--------~~~~--r~~~~niip~p~~~~~~~g~~v~~vlp~l~--i~~~ 210 (341)
T PRK04207 143 TGLCRTLCALDRAFGVKKVRATLVRRAADP--------KEVK--RGPINAIVPDPVTVPSHHGPDVKTVLPDLD--ITTM 210 (341)
T ss_pred HHHHHHHHHHHHhcCceEEEEEEEEcCCCc--------chhh--HHHhcCcCCCCCCCCCCchhHHHhhCCCCc--eEEE
Confidence 999999999999999999999999998842 3453 78999999752 233489999999996 9999
Q ss_pred EEecccccccEEEEEEEEccCCCHHHHHHHHHhcccc----cCcCcccccCCCceeecCCCCCc
Q 015637 299 ALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADN----ELKGILSVCDEPLVSVDFRCSDV 358 (403)
Q Consensus 299 avRVPv~~gs~~dl~v~~~k~~s~eeI~~al~~aa~~----~lkgil~~~~~p~VS~D~~~~~~ 358 (403)
|+||||++||+++++++|++++++|||+++|++++.= .-.|+.+ +.+++--.+=.|.++
T Consensus 211 avrVPv~~gh~~~v~v~l~~~~t~eev~~~l~~~~~i~~~~~~~~~~s-~~~~~~~~~~~~rp~ 273 (341)
T PRK04207 211 AVKVPTTLMHMHSVNVELKKPVTKEEVLEALENTPRILLVRASDGIDS-TAELIEYARDLGRPR 273 (341)
T ss_pred EEEcCCCCceEEEEEEEECCCCCHHHHHHHHHhCCCCEeeccccCCCC-hHHHhHHHHHcCCCc
Confidence 9999999999999999999999999999999998742 2246666 655544443344443
No 21
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=1e-46 Score=338.19 Aligned_cols=149 Identities=55% Similarity=0.907 Sum_probs=139.6
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCC-ChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~-~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
|||||||||||||+++|++..++ +|+||+|||.. ++++++|||+|||+||+|+++++ .+++.|.++|+.|++++++
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~--~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~-~~~~~l~v~G~~I~~~~~~ 77 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQP--DIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVE-VDDDGLIVNGKKIKVTEER 77 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTST--TEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEE-EETTEEEETTEEEEEEHTS
T ss_pred CEEEEECCCcccHHHHHhhcccc--eEEEEEEecccccchhhhhhhhccccccceecccc-cccceeEeecccccchhhh
Confidence 69999999999999999999776 49999999987 99999999999999999999999 8899999999999999999
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCCCC-CCeEEeecCccCCCCCCCeEecCCc
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADAYKPDEPIISNASC 220 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~~d-vp~vV~gVN~~~~~~~~~IISnaSC 220 (403)
+|+++||+++|+|+|+||||.|.+++.++.|+++||||||+|+|++++ +||||+|||++.|++++.||||+||
T Consensus 78 dp~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC 151 (151)
T PF00044_consen 78 DPEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC 151 (151)
T ss_dssp SGGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred hhcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence 999999999999999999999999999999999999999999999975 8999999999999987799999999
No 22
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-44 Score=356.17 Aligned_cols=233 Identities=16% Similarity=0.212 Sum_probs=197.8
Q ss_pred ceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEec
Q 015637 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (403)
Q Consensus 68 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~ 146 (403)
+++||| | +|.|||.++++|++|+ |+ +.++ +||. | ..+ +.|+++.|+|+++.|.
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~---fp---v~~l-------~l~~--s-------~~~-s~gk~i~f~g~~~~V~-- 56 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSD---LE---IEQI-------SIVE--I-------EPF-GEEQGIRFNNKAVEQI-- 56 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcC---Cc---hhhe-------eecc--c-------ccc-cCCCEEEECCEEEEEE--
Confidence 479999 9 9999999999999986 88 3443 5553 2 113 6789999999999993
Q ss_pred CCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCC----CCCCeEEeecCccCCCC--CCCeEecCCc
Q 015637 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKP--DEPIISNASC 220 (403)
Q Consensus 147 ~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~----~dvp~vV~gVN~~~~~~--~~~IISnaSC 220 (403)
+.+..+|+ ++|+||+ +|...++++++...++|| +||+++|. +|+|++|||||++++.. .++||+||||
T Consensus 57 -~l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPNC 130 (322)
T PRK06901 57 -APEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDP 130 (322)
T ss_pred -ECCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCcH
Confidence 35555664 8999999 998999999999999999 99999973 48999999999998875 3689999999
Q ss_pred hhhhHHHHHHHHHhhcCeeEEEEeeeeccccch-hhhhhchh---------h-hhhhHhhhcccCCCC-CChHHHHHHhc
Q 015637 221 TTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-RLLDASHR---------D-LRRARAAALNIVPTS-TGAAKAVALVL 288 (403)
Q Consensus 221 TTn~Lap~lk~L~~~fGI~~~~~TTiha~tg~q-~~~D~~~~---------d-~r~~r~~a~NIIP~~-tGaakav~kVl 288 (403)
||.+|+++|+|||+.|||+++.+|||||+||++ +.+|.... + -...++++||+||+. .|-..+.+|||
T Consensus 131 sTi~l~~aL~pL~~~~~l~rv~VsTyQavSGaG~~gv~eL~~qt~~~~n~~~~~~~~~~iAFNviP~ig~~m~~EtrKIl 210 (322)
T PRK06901 131 QVSQLALALAPFLQEQPLSQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPLDEEEQRLAFDVFPANAQNLELQLQKIF 210 (322)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeecchhhcCHhHHHHHHHHHHHHhCCCCCCCCceeeeccccccCCccHHHHHHHHh
Confidence 999999999999999999999999999999984 45553211 0 012378999999998 46778889999
Q ss_pred cccCCceeEEEEecccccccEEEEEEEEccCCCHHHHHHHHHhcc
Q 015637 289 PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 333 (403)
Q Consensus 289 PeL~gkl~~~avRVPv~~gs~~dl~v~~~k~~s~eeI~~al~~aa 333 (403)
|+| .++++||+||||++||++.++++|+++++.|+++++|++++
T Consensus 211 ~~l-~~VsaTcVRVPV~~GHs~sV~ve~e~~~~~e~~~~~l~~~~ 254 (322)
T PRK06901 211 PQL-ENVTFHSIQVPVFYGLAQMVTALSEYELDIESQLAEWQQNN 254 (322)
T ss_pred CCc-ccEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHhCC
Confidence 877 36999999999999999999999999999999999999886
No 23
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=2.6e-42 Score=309.11 Aligned_cols=149 Identities=54% Similarity=0.905 Sum_probs=141.6
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~d 148 (403)
+||||||||||||.++|++.+++ ++++++|+|+.++++++|||+|||+||+|+.+++ .+++.|.++|+.|.++++++
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~--~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~-~~~~~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERP--DIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVE-VDEDGLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC--CCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEE-EeCCEEEECCEEEEEEecCC
Confidence 58999999999999999998765 5999999998899999999999999999999998 88899999999999999999
Q ss_pred CCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCc
Q 015637 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASC 220 (403)
Q Consensus 149 p~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~~dvp~vV~gVN~~~~~~~~~IISnaSC 220 (403)
|.++||+++|+|+|+||||.|.+++.++.|+++||||||||+|++++.++||+|||++.|+++++||||+||
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence 999999999999999999999999999999999999999999998656799999999999987779999999
No 24
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-41 Score=332.91 Aligned_cols=289 Identities=25% Similarity=0.288 Sum_probs=212.2
Q ss_pred ceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCe-EEECCEEEEEEe
Q 015637 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDG-ISVDGKVIQVVS 145 (403)
Q Consensus 68 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~-l~i~G~~I~v~~ 145 (403)
++||||+| +|.||+.+++.|+++. .+|+.+ +++. | .+ +.|++ +.|.|+.+.+.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~-f~~~~~------------~~~A--S--------~r-SaG~~~~~f~~~~~~v~- 55 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERH-FPFEEL------------VLLA--S--------AR-SAGKKYIEFGGKSIGVP- 55 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcC-CCcceE------------EEEe--c--------cc-ccCCccccccCccccCc-
Confidence 37999999 9999999999999963 234422 2332 2 23 56666 88998877662
Q ss_pred cCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCC----CCCCeEEeecCccCCCCC--CC-eEecC
Q 015637 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKPD--EP-IISNA 218 (403)
Q Consensus 146 ~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~----~dvp~vV~gVN~~~~~~~--~~-IISna 218 (403)
+.-.+...|+ ++||||+|.|...+++++++..++|+ +|||+.|. +|+|++||+||++++... ++ ||+||
T Consensus 56 ~~~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~Iianp 131 (334)
T COG0136 56 EDAADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANP 131 (334)
T ss_pred cccccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECC
Confidence 2115556676 89999999999999999999999998 99999874 489999999999986542 35 99999
Q ss_pred CchhhhHHHHHHHHHhhcCeeEEEEeeeeccccchh-hhhhchhhhh----------hhHhhhcccCCCCC-----ChHH
Q 015637 219 SCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQR-LLDASHRDLR----------RARAAALNIVPTST-----GAAK 282 (403)
Q Consensus 219 SCTTn~Lap~lk~L~~~fGI~~~~~TTiha~tg~q~-~~D~~~~d~r----------~~r~~a~NIIP~~t-----Gaak 282 (403)
||||.+|++.||||+++|||+++.+|||||+||++. .++......+ .++++|+|+||++. |++|
T Consensus 132 NCst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~~~~iAfNviP~I~~~~~ng~t~ 211 (334)
T COG0136 132 NCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYTK 211 (334)
T ss_pred ChHHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCccchhhHHHHHhhhccCcccccccccccccccccCCccccCCccH
Confidence 999999999999999999999999999999999865 5553211111 15789999999985 4666
Q ss_pred HH-------HHhccccCCceeEEEEecccccccEEEEEEEEccCCCHHHHHHHHHhcccccCcCccccc-CCCceeecCC
Q 015637 283 AV-------ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVC-DEPLVSVDFR 354 (403)
Q Consensus 283 av-------~kVlPeL~gkl~~~avRVPv~~gs~~dl~v~~~k~~s~eeI~~al~~aa~~~lkgil~~~-~~p~VS~D~~ 354 (403)
++ .|||++-..+++++|+||||++||++.++++|+++++.+|+.+.+-..+.+ .-+..-. +.|+.-.|-.
T Consensus 212 EE~K~~~Et~KIlg~~~~~VsatcvRVPV~~GHse~v~ve~~~~~~~~e~~~~~l~~ap~--v~v~~~~~~~P~~~~d~~ 289 (334)
T COG0136 212 EEWKIEAETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREELLPSAPG--VVVVDNPEDRPQTPLDAT 289 (334)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEEEcceecccceEEEEEecCCCCHHHHHHHHhccCCC--cEEEeCCccCccChhhhc
Confidence 55 467876677899999999999999999999999999999999665333322 2222222 2565556666
Q ss_pred CCCcceeeeCCCccc-cCCceEEEEEEecC-Ccchhh
Q 015637 355 CSDVSSTVDSSLTLV-MGDDMVKVIAWYDN-EWGYSQ 389 (403)
Q Consensus 355 ~~~~s~i~d~~~~~~-~~~~~~K~~~WyDN-E~gys~ 389 (403)
|.. .++-++...- ..++.+++..==|| -||=+-
T Consensus 290 g~~--~v~VGRiR~d~~~~~~l~~~~v~dNl~~GAA~ 324 (334)
T COG0136 290 GGD--EVSVGRIRKDLSGPEGLKLWVVGDNLRKGAAL 324 (334)
T ss_pred CCC--ceEEeEeeecCCCCCcEEEEEEechhhhhhHH
Confidence 665 2332222211 12344565555676 355443
No 25
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=100.00 E-value=1.9e-40 Score=333.92 Aligned_cols=237 Identities=15% Similarity=0.176 Sum_probs=189.1
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
+||||+| +|.|||.++++|++++ +|++ ..+ +++. | -+ ++|+.+.++|+.+.+.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~--~fp~---~~~-------~~~s--s--------~~-s~g~~~~f~~~~~~v~--- 54 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEER--DFDA---IRP-------VFFS--T--------SQ-LGQAAPSFGGTTGTLQ--- 54 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCC--CCcc---ccE-------EEEE--c--------hh-hCCCcCCCCCCcceEE---
Confidence 4899999 9999999999998543 3884 221 3332 2 23 6778888999888763
Q ss_pred CCCCC-CCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCC----CCCCeEEeecCccCCCCC--CCe--EecC
Q 015637 148 NPVNL-PWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKPD--EPI--ISNA 218 (403)
Q Consensus 148 dp~~i-~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~----~dvp~vV~gVN~~~~~~~--~~I--ISna 218 (403)
+...+ .|. ++|+||+|+|...+++++++..++|+..+||+++|. +|+|++||+||++.+... ++| |+||
T Consensus 55 ~~~~~~~~~--~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ianP 132 (366)
T TIGR01745 55 DAFDIDALK--ALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVGG 132 (366)
T ss_pred cCccccccc--CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEECc
Confidence 23333 454 899999999999999999999999943499999873 489999999999987653 567 8999
Q ss_pred CchhhhHHHHHHHHHhhcCeeEEEEeeeeccccch-hhhhhchh------------------------------------
Q 015637 219 SCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-RLLDASHR------------------------------------ 261 (403)
Q Consensus 219 SCTTn~Lap~lk~L~~~fGI~~~~~TTiha~tg~q-~~~D~~~~------------------------------------ 261 (403)
||||++|+++|+|||+.|||+++.+|||||+||++ +.+|....
T Consensus 133 NCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 212 (366)
T TIGR01745 133 NCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGGARHMRELLTQMGHLYGHVEDELATPSSAILDIERKVTKLTRSGEL 212 (366)
T ss_pred CHHHHHHHHHHHHHHhccCccEEEEEechhhhhcCHHHHHHHHHHHHHHhccccccccccchhhhhhccccccccccCCC
Confidence 99999999999999999999999999999999985 34442100
Q ss_pred -hhhhhHhhhcccCCCC-----CChHHHH-------HHhccc-cCCceeEEEEecccccccEEEEEEEEccCCCHHHHHH
Q 015637 262 -DLRRARAAALNIVPTS-----TGAAKAV-------ALVLPA-LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNA 327 (403)
Q Consensus 262 -d~r~~r~~a~NIIP~~-----tGaakav-------~kVlPe-L~gkl~~~avRVPv~~gs~~dl~v~~~k~~s~eeI~~ 327 (403)
.-.+.+++++|+||++ +|+++++ +|||.. -+.++++||+||||++||++.++++|+++++.||+++
T Consensus 213 ~~~~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l~VsaTcVRVPV~~gHs~sv~ve~~~~vs~e~i~~ 292 (366)
T TIGR01745 213 PVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTIPVDGLCVRIGALRCHSQAFTIKLKKDVSLETIEE 292 (366)
T ss_pred CcccCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHHHHH
Confidence 0123578899999997 4766554 567732 2346999999999999999999999999999999999
Q ss_pred HHHhcc
Q 015637 328 AFRESA 333 (403)
Q Consensus 328 al~~aa 333 (403)
+|+++.
T Consensus 293 ~L~~~~ 298 (366)
T TIGR01745 293 IIRAHN 298 (366)
T ss_pred HHHhCC
Confidence 999854
No 26
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-39 Score=323.19 Aligned_cols=232 Identities=25% Similarity=0.380 Sum_probs=193.9
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
+||+|.| +|.+|+.++|+|.+++.+.++++++..- + ..++.+.++|..+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~-----------------------~-~~g~~l~~~g~~i~v~--- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASA-----------------------R-SAGKELSFKGKELKVE--- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcc-----------------------c-cCCCeeeeCCceeEEe---
Confidence 6999999 9999999999999864345777666421 1 3455566777666663
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCC----CCCCeEEeecCccCCCCC--CCeEecCCch
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKPD--EPIISNASCT 221 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~----~dvp~vV~gVN~~~~~~~--~~IISnaSCT 221 (403)
|+...+|. ++|+||+|+|.+.+++++++|+++|+ +||+.+++ +++|+++||||++.++.. ++|||||+|+
T Consensus 55 d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~C~ 130 (334)
T PRK14874 55 DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPNCS 130 (334)
T ss_pred eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECccHH
Confidence 44445674 89999999999999999999999999 89977653 368999999999998764 4799999999
Q ss_pred hhhHHHHHHHHHhhcCeeEEEEeeeecccc------------chhhhhhc---hhhhhhhHhhhcccCCCC-----CChH
Q 015637 222 TNCLAPFVKVLDQKFGIIKGTMTTTHSYTG------------DQRLLDAS---HRDLRRARAAALNIVPTS-----TGAA 281 (403)
Q Consensus 222 Tn~Lap~lk~L~~~fGI~~~~~TTiha~tg------------~q~~~D~~---~~d~r~~r~~a~NIIP~~-----tGaa 281 (403)
|+|++|+|+||+++|+|+++.|||+|++|| +|+.+|.+ ++++|++|++++||||+. +|.+
T Consensus 131 ~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~ 210 (334)
T PRK14874 131 TIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDGYT 210 (334)
T ss_pred HHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcCCccccCCCc
Confidence 999999999999999999999999999998 34555533 367789999999999997 7776
Q ss_pred HH-------HHHhc--cccCCceeEEEEecccccccEEEEEEEEccCCCHHHHHHHHHhcc
Q 015637 282 KA-------VALVL--PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 333 (403)
Q Consensus 282 ka-------v~kVl--PeL~gkl~~~avRVPv~~gs~~dl~v~~~k~~s~eeI~~al~~aa 333 (403)
++ +.+++ |++ +++++|+||||++||+.+++++++++++.+||+++|++++
T Consensus 211 ~eE~ki~~el~~il~~~~~--~v~~t~~rvPv~~G~~~ti~v~~~~~~~~~~v~~~l~~~~ 269 (334)
T PRK14874 211 KEEMKMVNETKKILGDPDL--KVSATCVRVPVFTGHSESVNIEFEEPISVEEAREILAEAP 269 (334)
T ss_pred HHHHHHHHHHHHHhCCCCC--eEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHcCC
Confidence 66 46776 777 5999999999999999999999999999999999999853
No 27
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=100.00 E-value=5.9e-39 Score=321.92 Aligned_cols=233 Identities=23% Similarity=0.320 Sum_probs=190.4
Q ss_pred eEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCC
Q 015637 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (403)
Q Consensus 70 kVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~d 148 (403)
||+|+| +|.+|+.++|+|.+++.+.++++.+.. -+ ..++.+.+.|+.+.+.. -+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as-----------------------~~-~~g~~~~~~~~~~~~~~-~~ 55 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLAS-----------------------DR-SAGRKVTFKGKELEVNE-AK 55 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEec-----------------------cc-cCCCeeeeCCeeEEEEe-CC
Confidence 699999 999999999999886422344433311 11 34666667776655532 23
Q ss_pred CCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCC---C-CCCCeEEeecCccCCCC--CCCeEecCCchh
Q 015637 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG---K-GDIPTYVVGVNADAYKP--DEPIISNASCTT 222 (403)
Q Consensus 149 p~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps---~-~dvp~vV~gVN~~~~~~--~~~IISnaSCTT 222 (403)
+. .| .++|+||+|+|.+.+++++++|+++|+ +||+.++ . +++|++|||||++.++. .++|||||+|+|
T Consensus 56 ~~--~~--~~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C~~ 129 (339)
T TIGR01296 56 IE--SF--EGIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNCST 129 (339)
T ss_pred hH--Hh--cCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCcHH
Confidence 22 34 389999999999999999999999998 7997775 2 36899999999999875 256999999999
Q ss_pred hhHHHHHHHHHhhcCeeEEEEeeeeccccch------------hhhhhchhh--------hhhhHhhhcccCCCC-----
Q 015637 223 NCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ------------RLLDASHRD--------LRRARAAALNIVPTS----- 277 (403)
Q Consensus 223 n~Lap~lk~L~~~fGI~~~~~TTiha~tg~q------------~~~D~~~~d--------~r~~r~~a~NIIP~~----- 277 (403)
+|++++|+||+++|+|+++.|||+|++||++ ++++.++.+ .+++|++++||||++
T Consensus 130 t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~~~ 209 (339)
T TIGR01296 130 IQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDFND 209 (339)
T ss_pred HHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCccc
Confidence 9999999999999999999999999999973 334433333 678999999999995
Q ss_pred CChHHHHHHhccccC-------CceeEEEEecccccccEEEEEEEEccCCCHHHHHHHHHhcc
Q 015637 278 TGAAKAVALVLPALK-------GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 333 (403)
Q Consensus 278 tGaakav~kVlPeL~-------gkl~~~avRVPv~~gs~~dl~v~~~k~~s~eeI~~al~~aa 333 (403)
+|+++++.|+.|||+ .+++++|+||||++||+.+++++++++++.||++++|++++
T Consensus 210 ~~~~~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~~v~v~~~~~v~~~~i~~~l~~~~ 272 (339)
T TIGR01296 210 DGYTKEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSESVNIEFEKEISPEDVRELLKNAP 272 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEEEEEEEECCCCCHHHHHHHHhcCC
Confidence 688999999988875 37999999999999999999999999999999999999654
No 28
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-37 Score=311.65 Aligned_cols=236 Identities=18% Similarity=0.314 Sum_probs=191.0
Q ss_pred ceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEec
Q 015637 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (403)
Q Consensus 68 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~ 146 (403)
.+||||+| +|.+|+.++|+|++++ +|++.-+ +++ .| -+ +.|+.+.+.|+.+.+. +
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~--~f~v~~l----------~~~--aS--------~~-saGk~~~~~~~~l~v~-~ 60 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKET--KFNIAEV----------TLL--SS--------KR-SAGKTVQFKGREIIIQ-E 60 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCC--CCCcccE----------EEE--EC--------cc-cCCCCeeeCCcceEEE-e
Confidence 47999999 9999999999999775 4884211 222 12 13 5788888999877774 3
Q ss_pred CCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCC----CCCCeEEeecCccCCCCCCCeEecCCchh
Q 015637 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKPDEPIISNASCTT 222 (403)
Q Consensus 147 ~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~----~dvp~vV~gVN~~~~~~~~~IISnaSCTT 222 (403)
.++.. |. ++|+||+|+|...+++++++..++|+ +||++++. +++|+++||||.+++...++||+||+|+|
T Consensus 61 ~~~~~--~~--~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~iIanPnC~t 134 (347)
T PRK06728 61 AKINS--FE--GVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSA 134 (347)
T ss_pred CCHHH--hc--CCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhccCCEEECCCCHH
Confidence 45543 43 79999999999999999999999998 89998863 47999999999998876447999999999
Q ss_pred hhHHHHHHHHHhhcCeeEEEEeeeeccccch-hhhhhchhh------------hhhh-------HhhhcccCCCC-----
Q 015637 223 NCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-RLLDASHRD------------LRRA-------RAAALNIVPTS----- 277 (403)
Q Consensus 223 n~Lap~lk~L~~~fGI~~~~~TTiha~tg~q-~~~D~~~~d------------~r~~-------r~~a~NIIP~~----- 277 (403)
++++..|+||+++|+|+++.++|||++||++ +.++..... -.+. +++++|+||++
T Consensus 135 t~~~laL~PL~~~~~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~i~~~~~ 214 (347)
T PRK06728 135 LQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTD 214 (347)
T ss_pred HHHHHHHHHHHHcCCccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCceeccccCcCCcccc
Confidence 9999999999999999999999999999984 455531111 1223 88999999997
Q ss_pred CChHHHH-------HHhccccCCceeEEEEecccccccEEEEEEEEccCCCHHHHHHHHHhcc
Q 015637 278 TGAAKAV-------ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 333 (403)
Q Consensus 278 tGaakav-------~kVlPeL~gkl~~~avRVPv~~gs~~dl~v~~~k~~s~eeI~~al~~aa 333 (403)
+|+++++ +|||..-+.++++||+||||++||.+.++++|+++++.|+++++|++++
T Consensus 215 ~g~t~EE~K~~~E~~KIL~~~~l~VsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~~~~ 277 (347)
T PRK06728 215 NDFTFEEVKMIQETKKILEDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAP 277 (347)
T ss_pred CCccHHHHHHHHHHHHHhCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHHcCC
Confidence 5655544 5677322336999999999999999999999999999999999998874
No 29
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=7.4e-37 Score=308.57 Aligned_cols=238 Identities=16% Similarity=0.136 Sum_probs=184.0
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
+||||+| +|.+|+.++|.+.+++ +|++ .++ +++ .|. + +.+..+.++|+...++...
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~--~f~~---~~l-------~~~--ss~--------~-sg~~~~~f~g~~~~v~~~~ 58 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEEN--DFDL---IEP-------VFF--STS--------Q-AGGAAPSFGGKEGTLQDAF 58 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCC--CCCc---CcE-------EEe--cch--------h-hCCcccccCCCcceEEecC
Confidence 7999999 9999999999555444 3772 111 111 121 1 3444556788777765433
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCC----CCCCeEEeecCccCCCCC--C--CeEecCC
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKPD--E--PIISNAS 219 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~----~dvp~vV~gVN~~~~~~~--~--~IISnaS 219 (403)
+++. |. ++|+||+|+|...+++++++..++|++.+||++++. +++|++|||||++++... . ++|+||+
T Consensus 59 ~~~~--~~--~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIanPn 134 (369)
T PRK06598 59 DIDA--LK--KLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFVGGN 134 (369)
T ss_pred ChhH--hc--CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEEcCC
Confidence 3443 43 799999999999999999999999955589999873 489999999999987642 2 4899999
Q ss_pred chhhhHHHHHHHHHhhcCeeEEEEeeeeccccchh-hhhhchh---h---------------------------------
Q 015637 220 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQR-LLDASHR---D--------------------------------- 262 (403)
Q Consensus 220 CTTn~Lap~lk~L~~~fGI~~~~~TTiha~tg~q~-~~D~~~~---d--------------------------------- 262 (403)
|+|++++..|+||+++++|+++.++|||++||+++ .+|.... .
T Consensus 135 C~tt~~~laL~PL~~~~~i~~viVst~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (369)
T PRK06598 135 CTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGARNMRELLTQMGALHGAVADELADPASAILDIDRKVTELMRSGDLP 214 (369)
T ss_pred hHHHHHHHHHHHHHhcCCceEEEEEeeecccccCHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhhhhcccCCCC
Confidence 99999999999999999999999999999999853 4442110 0
Q ss_pred -hhhhHhhhcccCCCC-----CChHHHH-------HHhccc--cCCceeEEEEecccccccEEEEEEEEccCCCHHHHHH
Q 015637 263 -LRRARAAALNIVPTS-----TGAAKAV-------ALVLPA--LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNA 327 (403)
Q Consensus 263 -~r~~r~~a~NIIP~~-----tGaakav-------~kVlPe--L~gkl~~~avRVPv~~gs~~dl~v~~~k~~s~eeI~~ 327 (403)
-.+.+++++|+||++ +|+++++ +|||.. -+.++++||+||||++||++.++++|+++++.+|+++
T Consensus 215 ~~~f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l~vs~tcVRVPV~~gHs~sv~ve~~~~~~~~~i~~ 294 (369)
T PRK06598 215 TDNFGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPIPVDGLCVRVGAMRCHSQALTIKLKKDVPLAEIEE 294 (369)
T ss_pred cccCCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEEcceeccEEEEEEEEECCCCCHHHHHH
Confidence 012468999999997 5776655 567732 2336999999999999999999999999999999999
Q ss_pred HHHhcc
Q 015637 328 AFRESA 333 (403)
Q Consensus 328 al~~aa 333 (403)
+|+++.
T Consensus 295 ~L~~~~ 300 (369)
T PRK06598 295 ILAAHN 300 (369)
T ss_pred HHHhcC
Confidence 999854
No 30
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-32 Score=275.01 Aligned_cols=235 Identities=20% Similarity=0.232 Sum_probs=187.9
Q ss_pred CceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEe
Q 015637 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (403)
Q Consensus 67 m~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~ 145 (403)
+++||||+| +|.+|+.++|+|.+++.+.++|+.+.. + + +.|+.+.++|+.+.+.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS-------------~----------~-saG~~~~~~~~~~~v~- 57 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALAS-------------E----------E-SAGETLRFGGKSVTVQ- 57 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEc-------------c----------C-cCCceEEECCcceEEE-
Confidence 468999999 999999999999996434577655531 1 2 5678888888877763
Q ss_pred cCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCC----CCCCeEEeecCccCCCC--CCCeEecCC
Q 015637 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKP--DEPIISNAS 219 (403)
Q Consensus 146 ~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~----~dvp~vV~gVN~~~~~~--~~~IISnaS 219 (403)
++++++|. ++|+||+|++...++++++...++|+ +||+.+++ +++|+++||||.+.++. ..+||+||+
T Consensus 58 --~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~iIAnPg 131 (336)
T PRK08040 58 --DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNIIAVAD 131 (336)
T ss_pred --eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhccCCEEECCC
Confidence 56667775 79999999999999999999989888 89988863 47899999999965543 368999999
Q ss_pred chhhhHHHHHHHHHhhcCeeEEEEeeeeccccchh-hhhhch------------hhhhhhHhhhcccCCCCCC---hH--
Q 015637 220 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQR-LLDASH------------RDLRRARAAALNIVPTSTG---AA-- 281 (403)
Q Consensus 220 CTTn~Lap~lk~L~~~fGI~~~~~TTiha~tg~q~-~~D~~~------------~d~r~~r~~a~NIIP~~tG---aa-- 281 (403)
|+|++++..|+||+++++|+++.|+|+|++||+++ ..+... +...+.+++++|++|++.+ ..
T Consensus 132 C~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~~~g~~~~ 211 (336)
T PRK08040 132 SLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPDSEGSVRE 211 (336)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCCcCCcchH
Confidence 99999999999999999999999999999999854 333210 0123456689999999432 22
Q ss_pred -----HHHHHhccccCCceeEEEEecccccccEEEEEEEEccCCCHHHHHHHHHhc
Q 015637 282 -----KAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRES 332 (403)
Q Consensus 282 -----kav~kVlPeL~gkl~~~avRVPv~~gs~~dl~v~~~k~~s~eeI~~al~~a 332 (403)
.+++|+|..-+.+++.+|+|||+++||+..++++++++++.+++.++|+++
T Consensus 212 erh~~~Ei~kiL~~~~~~vs~t~~~vPv~rG~~~tv~v~~~~~v~~~~i~~~l~~~ 267 (336)
T PRK08040 212 ERRLVDQVRKILQDEGLPISVSCVQSPVFYGHAQMVHFEALRPLAAEEARDALEQG 267 (336)
T ss_pred hhhhHHHHHHHhCCCCCeEEEEeEEecchhcEEEEEEEEECCCCCHHHHHHHHhcC
Confidence 244566621123499999999999999999999999999999999999984
No 31
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.98 E-value=2.5e-31 Score=266.53 Aligned_cols=234 Identities=19% Similarity=0.222 Sum_probs=183.5
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
+||||.| +|.+|+.++|+|.++..+.++++.+... + ..|+.|.++|+.+.+.
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-----------------------~-~aG~~l~~~~~~l~~~--- 57 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-----------------------E-SAGHSVPFAGKNLRVR--- 57 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-----------------------c-cCCCeeccCCcceEEe---
Confidence 7999999 9999999999999654234666555321 1 3456666777655552
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCC---CCCCeEEeecCccCCCC--CCCeEecCCchh
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK---GDIPTYVVGVNADAYKP--DEPIISNASCTT 222 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~---~dvp~vV~gVN~~~~~~--~~~IISnaSCTT 222 (403)
+++..+|+ ++|+||.|++...+.++++..+++|+ +||+.+++ +++|+++||||.+.++. ..+||+||+|+|
T Consensus 58 ~~~~~~~~--~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIAnPgC~~ 133 (336)
T PRK05671 58 EVDSFDFS--QVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVSSPSASA 133 (336)
T ss_pred eCChHHhc--CCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCCCCCEEecccCHHHHccccCCCEEECCCcHH
Confidence 23333453 79999999999999999999989888 78988864 57999999999998875 258999999999
Q ss_pred hhHHHHHHHHHhhcCeeEEEEeeeeccccchh-hhhh--ch----------hhhhhhHhhhcccCCCCC-----ChHHHH
Q 015637 223 NCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQR-LLDA--SH----------RDLRRARAAALNIVPTST-----GAAKAV 284 (403)
Q Consensus 223 n~Lap~lk~L~~~fGI~~~~~TTiha~tg~q~-~~D~--~~----------~d~r~~r~~a~NIIP~~t-----Gaakav 284 (403)
++++..|+||++.|+++++.++|+|++||+++ ..+. .+ ..-.+.++++||++|+.. |.++++
T Consensus 134 t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~iafn~~P~ig~~~~~gh~~eE 213 (336)
T PRK05671 134 VALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPDAQGHTALE 213 (336)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEeecCcccCcccchHHHHHHHHHhCCCCccccccccccccccccccCccccCCccHHH
Confidence 99999999999999999999999999999854 3332 10 011245789999999874 665544
Q ss_pred H-------HhccccCCceeEEEEecccccccEEEEEEEEccCCCHHHHHHHHHhcc
Q 015637 285 A-------LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 333 (403)
Q Consensus 285 ~-------kVlPeL~gkl~~~avRVPv~~gs~~dl~v~~~k~~s~eeI~~al~~aa 333 (403)
. |+|...+.+++.+|+|||+++||+..++++++++++.+|++++|++++
T Consensus 214 ~r~~~Ei~kiL~~~~~~v~~t~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~l~~~~ 269 (336)
T PRK05671 214 RRLVAELRQLLGLPELKISVTCIQVPVFFGDSLSVALQSAAPVDLAAVNAALEAAP 269 (336)
T ss_pred HHHHHHHHHHhCCCCCcEEEEeEEechhhhEeeEEEEEECCCCCHHHHHHHHhCCC
Confidence 4 555222345999999999999999999999999999999999999554
No 32
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.98 E-value=2.3e-31 Score=267.48 Aligned_cols=238 Identities=17% Similarity=0.239 Sum_probs=185.5
Q ss_pred ccCceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEE
Q 015637 65 AQAKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (403)
Q Consensus 65 ~~m~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v 143 (403)
+.+++||+|+| +|.+|+.++|+|.+++.+.++++.+.. .+ +.|+.+.++|+.+.+
T Consensus 4 ~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las-----------------------~r-saGk~~~~~~~~~~v 59 (344)
T PLN02383 4 TENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLAS-----------------------AR-SAGKKVTFEGRDYTV 59 (344)
T ss_pred cCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEc-----------------------cC-CCCCeeeecCceeEE
Confidence 44678999999 999999999999985433466554421 12 456666667766555
Q ss_pred EecCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCC----CCCCeEEeecCccCCCCC------CC
Q 015637 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKPD------EP 213 (403)
Q Consensus 144 ~~~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~----~dvp~vV~gVN~~~~~~~------~~ 213 (403)
...+++ .|. ++|+||+|+|...+++++++..++|+ +||++++. +++|+++||||.+.++.. .+
T Consensus 60 -~~~~~~--~~~--~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~ 132 (344)
T PLN02383 60 -EELTED--SFD--GVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGA 132 (344)
T ss_pred -EeCCHH--HHc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCc
Confidence 223333 342 79999999999999999998888888 89988863 479999999999987752 34
Q ss_pred eEecCCchhhhHHHHHHHHHhhcCeeEEEEeeeeccccchh-hhhhch------------hhhhhhHhhhcccCCCCC--
Q 015637 214 IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQR-LLDASH------------RDLRRARAAALNIVPTST-- 278 (403)
Q Consensus 214 IISnaSCTTn~Lap~lk~L~~~fGI~~~~~TTiha~tg~q~-~~D~~~------------~d~r~~r~~a~NIIP~~t-- 278 (403)
||+||+|+|++++..|+||+++++|+++.++|+|++||+++ .++..+ ..-+.....++|++|+.+
T Consensus 133 iIanPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~ 212 (344)
T PLN02383 133 LIANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPM 212 (344)
T ss_pred EEECCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCcc
Confidence 99999999999999999999999999999999999999853 444332 112345778999999964
Q ss_pred ---ChHH-------HHHHhccccCCceeEEEEecccccccEEEEEEEEccCCCHHHHHHHHHhcc
Q 015637 279 ---GAAK-------AVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 333 (403)
Q Consensus 279 ---Gaak-------av~kVlPeL~gkl~~~avRVPv~~gs~~dl~v~~~k~~s~eeI~~al~~aa 333 (403)
|+++ ++.|++-.-+.+++.+|+|||+++||+..++++++++++.+++.++|++++
T Consensus 213 ~~~g~~~~E~~~~~e~~kil~~~~~~v~~t~~~vPv~rG~~~sv~v~~~~~v~~~~~~~~l~~~p 277 (344)
T PLN02383 213 QENGYNEEEMKLVKETRKIWNDDDVKVTATCIRVPVMRAHAESINLQFEKPLDEATAREILASAP 277 (344)
T ss_pred ccCCCChHHHHHHHHHHHHhCCCCCeEEEEeEecCccccEEEEEEEEECCCCCHHHHHHHHhcCC
Confidence 4433 333566211235999999999999999999999999999999999999843
No 33
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.97 E-value=1.3e-30 Score=261.63 Aligned_cols=254 Identities=22% Similarity=0.284 Sum_probs=188.7
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECC--EEEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG--KVIQVVS 145 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G--~~I~v~~ 145 (403)
+||||+| +|.+|+.++++|.+++ +++|+++-+.. +.....+ ...+..+ . .++ ..+ ..+.+ +
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~--~~~l~~v~~~~--~~~g~~~--~~~~~~~----~-~~~----~~~~~~~~~~-~ 64 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHP--YFELAKVVASP--RSAGKRY--GEAVKWI----E-PGD----MPEYVRDLPI-V 64 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC--CceEEEEEECh--hhcCCcc--hhhcccc----c-cCC----CccccceeEE-E
Confidence 5899999 9999999999999886 48998885421 1000000 0101000 0 000 000 12233 2
Q ss_pred cCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCC----CCCCCeEEeecCccCCCC---------CC
Q 015637 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKP---------DE 212 (403)
Q Consensus 146 ~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps----~~dvp~vV~gVN~~~~~~---------~~ 212 (403)
..+++ .| .++|+||+|++...+.+.++...++|+ .||+.++ ++++|+++|++|++.|.. ..
T Consensus 65 ~~~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~--~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~ 138 (341)
T TIGR00978 65 EPEPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGK--PVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKG 138 (341)
T ss_pred eCCHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCC--EEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCc
Confidence 22333 23 379999999999999999988888888 4565554 346899999999987653 12
Q ss_pred CeEecCCchhhhHHHHHHHHHhhcCeeEEEEeeeeccccchhhhhhchhhhhhhHhhhcccCCCCCChH----HHHHHhc
Q 015637 213 PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAA----KAVALVL 288 (403)
Q Consensus 213 ~IISnaSCTTn~Lap~lk~L~~~fGI~~~~~TTiha~tg~q~~~D~~~~d~r~~r~~a~NIIP~~tGaa----kav~kVl 288 (403)
+||+||+|+|+|+++.|+||+++++|+++.|||+|++||+++.... .+.+++|++|+..+.. .++.++|
T Consensus 139 ~iVanPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~~~-------~~~~~~Ni~py~~~~ehrh~~Ei~~il 211 (341)
T TIGR00978 139 FIVTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYPGVP-------SMDILDNIIPHIGGEEEKIERETRKIL 211 (341)
T ss_pred cEEeCCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCCCCc-------cchhhCCeEecCcHHHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999999863221 2457999999997762 4678899
Q ss_pred cccCC--------ceeEEEEecccccccEEEEEEEEccCCCHHHHHHHHHhcccccCcCcccccCCCceee
Q 015637 289 PALKG--------KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSV 351 (403)
Q Consensus 289 PeL~g--------kl~~~avRVPv~~gs~~dl~v~~~k~~s~eeI~~al~~aa~~~lkgil~~~~~p~VS~ 351 (403)
+.+.+ +++.+++|||+++||+.+++++++++++.+|++++|+++.+.++...+.-+.+|+|-.
T Consensus 212 ~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~v~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~fv~~ 282 (341)
T TIGR00978 212 GKLENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGLPQKLGLPSAPEKPIIV 282 (341)
T ss_pred CccccCcccCCCceEEEEEEEcCccccEEEEEEEEeCCCCCHHHHHHHHHhCcCccccccCCCCCCCcEEE
Confidence 87633 5999999999999999999999999999999999999988765555555566666644
No 34
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.97 E-value=5e-30 Score=258.16 Aligned_cols=240 Identities=22% Similarity=0.290 Sum_probs=175.8
Q ss_pred CceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEe
Q 015637 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (403)
Q Consensus 67 m~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~ 145 (403)
|++||+|+| +|.+|+.++|+|.+++ +++++++... ....-..+ .+.++ +...-. ..+. + +.+.+ +
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p--~~el~~~~~s--~~~~G~~~--~~~~~-~~~~~~-~~~~---~--~~~~v-~ 67 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHP--WFEVTALAAS--ERSAGKTY--GEAVR-WQLDGP-IPEE---V--ADMEV-V 67 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCC--CceEEEEEcC--hhhcCCcc--ccccc-cccccc-cccc---c--cceEE-E
Confidence 578999999 9999999999999886 4899888221 11100001 11110 000000 0000 0 12333 2
Q ss_pred cCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCC----CCCCCeEEeecCccCCCC----------C
Q 015637 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKP----------D 211 (403)
Q Consensus 146 ~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps----~~dvp~vV~gVN~~~~~~----------~ 211 (403)
..+++. |. ++|+||+|++...+.+.++...++|+ .+|+.++ .++.|++++++|++.|.. .
T Consensus 68 ~~~~~~--~~--~~DvVf~a~p~~~s~~~~~~~~~~G~--~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~ 141 (349)
T PRK08664 68 STDPEA--VD--DVDIVFSALPSDVAGEVEEEFAKAGK--PVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWD 141 (349)
T ss_pred eCCHHH--hc--CCCEEEEeCChhHHHHHHHHHHHCCC--EEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccCC
Confidence 234544 32 78999999999888888887778888 4555544 236799999999987632 1
Q ss_pred CCeEecCCchhhhHHHHHHHHHhhcCeeEEEEeeeeccccchhhhhhchhhhhhhHhhhcccCCCCCCh--------HHH
Q 015637 212 EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGA--------AKA 283 (403)
Q Consensus 212 ~~IISnaSCTTn~Lap~lk~L~~~fGI~~~~~TTiha~tg~q~~~D~~~~d~r~~r~~a~NIIP~~tGa--------aka 283 (403)
.+||+||+|+|+|+++.|+||++ |||+++.|||+|++||+++-. +..+.+++|++|+..+. .+.
T Consensus 142 ~~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~~-------~~~~~~~~N~~p~~~~~ehrh~~Ei~~~ 213 (349)
T PRK08664 142 GFIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGYPG-------VPSMDIVDNVIPYIGGEEEKIEKETLKI 213 (349)
T ss_pred ceEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCccc-------chhhhhhcCcccccCchhhhhhHHHHHH
Confidence 25999999999999999999999 999999999999999997522 22457899999998875 233
Q ss_pred HHHh----ccccCCceeEEEEecccccccEEEEEEEEccCCCHHHHHHHHHhccc
Q 015637 284 VALV----LPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD 334 (403)
Q Consensus 284 v~kV----lPeL~gkl~~~avRVPv~~gs~~dl~v~~~k~~s~eeI~~al~~aa~ 334 (403)
++++ +|.++.+++++++|||+++||+.+++++++++++.+|++++|+++..
T Consensus 214 l~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~~~l~~~~~~~~v~~~~~~~~~ 268 (349)
T PRK08664 214 LGKFEGGKIVPADFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALESFKG 268 (349)
T ss_pred hhhcccccccCCCceEEEEeEEccccccEEEEEEEEeCCCCCHHHHHHHHHhccC
Confidence 3333 45567889999999999999999999999999999999999999765
No 35
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.94 E-value=1.3e-25 Score=225.90 Aligned_cols=235 Identities=18% Similarity=0.162 Sum_probs=171.7
Q ss_pred CceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCE-EEEEE
Q 015637 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGK-VIQVV 144 (403)
Q Consensus 67 m~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~-~I~v~ 144 (403)
|++||||.| +|.+|+.+++.|.+++ +++++++.+-.... ..+ ...|+.+. +. ...+
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p--~~elv~v~~~~~~g---~~l--~~~~~~~~--------------~~~~~~~- 58 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHP--EVEIVAVTSRSSAG---KPL--SDVHPHLR--------------GLVDLVL- 58 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCC--CceEEEEECccccC---cch--HHhCcccc--------------cccCcee-
Confidence 558999999 8999999999999876 48998886520100 001 00111110 10 0111
Q ss_pred ecCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCC----C-C------------------CCeEEe
Q 015637 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----G-D------------------IPTYVV 201 (403)
Q Consensus 145 ~~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~----~-d------------------vp~vV~ 201 (403)
.+ .+...| .++|+||.|++.....+.+...+++|+ .||++++. + + +|+.+|
T Consensus 59 ~~--~~~~~~--~~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lp 132 (343)
T PRK00436 59 EP--LDPEIL--AGADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLP 132 (343)
T ss_pred ec--CCHHHh--cCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecC
Confidence 11 221233 369999999999999999998888776 89988763 2 3 799999
Q ss_pred ecCccCCCCCCCeEecCCchhhhHHHHHHHHHhhcCee--EEEEeeeeccccchh-hhhhchhhhhhhHhhhcccCCCCC
Q 015637 202 GVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGII--KGTMTTTHSYTGDQR-LLDASHRDLRRARAAALNIVPTST 278 (403)
Q Consensus 202 gVN~~~~~~~~~IISnaSCTTn~Lap~lk~L~~~fGI~--~~~~TTiha~tg~q~-~~D~~~~d~r~~r~~a~NIIP~~t 278 (403)
|+|.+.++. .+||+||+|+|++++..|+||++.++|+ ++.++|++++||+++ .++..+...+...-.++|++|+.+
T Consensus 133 e~~~~~i~~-~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~~~~~~~~~~y~~~~h~h 211 (343)
T PRK00436 133 ELNREEIKG-ARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTLFSEVNENLRPYKVGGHRH 211 (343)
T ss_pred ccCHHHhcC-CCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCccccccchhhcCCeeecccCCCCC
Confidence 999998875 5899999999999999999999999998 899999999999965 444332222222223677777653
Q ss_pred ChHHHHHHhccccCCceeEEEEecccccccEEEEEEEEccCCCHHHHHHHHHhc
Q 015637 279 GAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRES 332 (403)
Q Consensus 279 Gaakav~kVlPeL~gkl~~~avRVPv~~gs~~dl~v~~~k~~s~eeI~~al~~a 332 (403)
..++.+.+..+.++++.+|+|||+++||++.++++++++++.+|++++|+++
T Consensus 212 --~~Ei~~~l~~~~~~v~~t~~~vPv~~G~~~tv~v~~~~~~~~~~~~~~~~~~ 263 (343)
T PRK00436 212 --TPEIEQELSALAGEVSFTPHLVPMTRGILATIYARLKDPVTAEDVRAAYEEF 263 (343)
T ss_pred --HHHHHHHHHHhcCCEEEEeEEecccCcEEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 3445444433322799999999999999999999999999999999999864
No 36
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.92 E-value=1.4e-24 Score=218.68 Aligned_cols=237 Identities=16% Similarity=0.134 Sum_probs=165.7
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCE-EEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGK-VIQVVSN 146 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~-~I~v~~~ 146 (403)
+||||.| +|.+|+.++|.|.++| .++++++-+.-. .....+ ...|+.+. +. ...+ ..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP--~~el~~l~~s~~--sagk~~--~~~~~~l~--------------~~~~~~~-~~ 59 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHP--EVEITYLVSSRE--SAGKPV--SEVHPHLR--------------GLVDLNL-EP 59 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC--CceEEEEeccch--hcCCCh--HHhCcccc--------------ccCCcee-ec
Confidence 5899999 8999999999999886 489887633200 000000 11111110 10 1112 22
Q ss_pred CCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCC----C-------------------CCCeEEeec
Q 015637 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----G-------------------DIPTYVVGV 203 (403)
Q Consensus 147 ~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~----~-------------------dvp~vV~gV 203 (403)
.++++ |.+ ++|+||.|++...+++.++..+++|+ +||+.++. + ++|..+||+
T Consensus 60 ~~~~~--~~~-~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~ 134 (346)
T TIGR01850 60 IDEEE--IAE-DADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPEL 134 (346)
T ss_pred CCHHH--hhc-CCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCcc
Confidence 23332 222 79999999999999999998888886 78887753 2 489999999
Q ss_pred CccCCCCCCCeEecCCchhhhHHHHHHHHHhhcCee--EEEEeeeeccccchh-hhhhchhhhhhhHhhhcccCCCCCC-
Q 015637 204 NADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGII--KGTMTTTHSYTGDQR-LLDASHRDLRRARAAALNIVPTSTG- 279 (403)
Q Consensus 204 N~~~~~~~~~IISnaSCTTn~Lap~lk~L~~~fGI~--~~~~TTiha~tg~q~-~~D~~~~d~r~~r~~a~NIIP~~tG- 279 (403)
|.+.+.. .+||+||+|+|+++...|+||++++.|+ ++.++|++++||+++ ..+..+...+...-...|++|+.+-
T Consensus 135 n~~~i~~-~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~~~~~~~~~~~y~~~~h~h~~ 213 (346)
T TIGR01850 135 HREEIKG-ARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASPANHFPEVNENLRPYKVTGHRHTP 213 (346)
T ss_pred CHHHhCC-CcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCccccccchhhcCCeeeeccCCcCcHH
Confidence 9998864 6799999999999999999999998887 799999999999975 4443332222111112344443211
Q ss_pred -hHHHHHHhccccCCceeEEEEecccccccEEEEEEEEccCCCHHHHHHHHHhcc
Q 015637 280 -AAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 333 (403)
Q Consensus 280 -aakav~kVlPeL~gkl~~~avRVPv~~gs~~dl~v~~~k~~s~eeI~~al~~aa 333 (403)
-.+++++++. -+.+++.+++|||+++||+..++++++++++.+|++++|+++-
T Consensus 214 Ei~~~l~~~~~-~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~~~~~y 267 (346)
T TIGR01850 214 EIEQELGRLAG-GKVKVSFTPHLVPMTRGILATIYAKLKDGLTEEDLRAAYEEFY 267 (346)
T ss_pred HHHHHHHHhcC-CCCCEEEEeEEeeccccEEEEEEEecCCCCCHHHHHHHHHHHh
Confidence 1123344432 1235999999999999999999999999999999999999654
No 37
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.92 E-value=6.1e-24 Score=216.49 Aligned_cols=245 Identities=11% Similarity=0.088 Sum_probs=171.6
Q ss_pred cCceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEE
Q 015637 66 QAKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (403)
Q Consensus 66 ~m~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~ 144 (403)
.|++||+|.| +|.+|+.++|+|.+|| +++|+.+..- +. .|+- +. ..... +.+....-+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP--~~el~~l~s~---~s----------aG~~---i~-~~~~~--l~~~~~~~~ 94 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHP--DFEITVMTAD---RK----------AGQS---FG-SVFPH--LITQDLPNL 94 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCC--CCeEEEEECh---hh----------cCCC---ch-hhCcc--ccCccccce
Confidence 4778999999 9999999999999996 4898777531 00 0110 00 00000 111111111
Q ss_pred ecCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCC----CC--------CCeEEeecCccC-CC--
Q 015637 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GD--------IPTYVVGVNADA-YK-- 209 (403)
Q Consensus 145 ~~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~----~d--------vp~vV~gVN~~~-~~-- 209 (403)
..-++. +| .++|+||.|+|...+.+.++. +++|+ +||+.+++ ++ +|..+|++|.+. |.
T Consensus 95 ~~~~~~--~~--~~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglp 167 (381)
T PLN02968 95 VAVKDA--DF--SDVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLT 167 (381)
T ss_pred ecCCHH--Hh--cCCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhccCCCCCCcccchhhhcccc
Confidence 112222 24 279999999999888888887 56665 78887763 35 799999999884 43
Q ss_pred -------CCCCeEecCCchhhhHHHHHHHHHhhcCe--eEEEEeeeeccccchh-hhhhch-hhhh-hhHhhhcccCCCC
Q 015637 210 -------PDEPIISNASCTTNCLAPFVKVLDQKFGI--IKGTMTTTHSYTGDQR-LLDASH-RDLR-RARAAALNIVPTS 277 (403)
Q Consensus 210 -------~~~~IISnaSCTTn~Lap~lk~L~~~fGI--~~~~~TTiha~tg~q~-~~D~~~-~d~r-~~r~~a~NIIP~~ 277 (403)
...+||+||+|.|+++...|+||+++++| +++.++|++++||+++ ..+..+ .+.. .-|+..+|..|+.
T Consensus 168 E~~r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l~~e~~~n~~~y~~~~h~h~ 247 (381)
T PLN02968 168 ELQREEIKSARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANLYTEIAEGIGAYGVTRHRHV 247 (381)
T ss_pred hhCHHHhcCCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcccchhhhHHHhcccceeeccCCCCCc
Confidence 12579999999999999999999999999 7899999999999965 333312 1111 1255677777765
Q ss_pred CChHHHHHHhc-cccCCceeEEEEecccccccEEEEEEEEccCCCHHHHHHHHHhc-ccccCcCc
Q 015637 278 TGAAKAVALVL-PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRES-ADNELKGI 340 (403)
Q Consensus 278 tGaakav~kVl-PeL~gkl~~~avRVPv~~gs~~dl~v~~~k~~s~eeI~~al~~a-a~~~lkgi 340 (403)
.-..+.+.+++ ++ .+++.+++|||+++||+..++++++++++.+|+.++|+++ +..++-.+
T Consensus 248 pEie~~~~~~~~~~--~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~v~~~~~~~y~~~~fV~~ 310 (381)
T PLN02968 248 PEIEQGLADAAGSK--VTPSFTPHLMPMSRGMQSTVYVHYAPGVTAEDLHQHLKERYEGEEFVKV 310 (381)
T ss_pred chHHHHHHHHhCCC--CCEEEEeEEeeccccEEEEEEEEeCCCCCHHHHHHHHHHhCCCCCEEEe
Confidence 32222334443 33 3599999999999999999999999999999999999995 43344333
No 38
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.92 E-value=2.6e-25 Score=211.88 Aligned_cols=235 Identities=18% Similarity=0.216 Sum_probs=173.6
Q ss_pred eEE-EEc-cChhHHHHHHHHHcCCCCCceEEEEec---CCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEE
Q 015637 70 KVA-ING-FGRIGRNFLRCWHGRKDSPLEVVAIND---TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (403)
Q Consensus 70 kVa-InG-fGrIGr~vlr~l~~~~~~~~evvaInd---~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~ 144 (403)
|+| |+| ||.|||+|+-+|.+|| +|+|..+.. +++..|. + -|+|+.+.-. -+ .-..+.|
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdhP--~f~ikvLgAS~RSAGK~ya---~-----a~~wkqt~~l-p~-----~~~e~~V- 67 (361)
T KOG4777|consen 5 KSAPVLGATGAVGQRFISLLSDHP--YFSIKVLGASKRSAGKRYA---F-----AGNWKQTDLL-PE-----SAHEYTV- 67 (361)
T ss_pred cccceeeccchhHHHHHHHhccCC--cceeeeecccccccCCceE---e-----cccchhcccc-cc-----hhhhhhH-
Confidence 566 999 9999999999999997 577654433 2222211 1 1344332210 00 0023444
Q ss_pred ecCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCC----CCCCeEEeecCccCCCC----------
Q 015637 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKP---------- 210 (403)
Q Consensus 145 ~~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~----~dvp~vV~gVN~~~~~~---------- 210 (403)
++-+++.|. ++||||+..+...+.|.-+...++|- +|+|+.+. +++|++||+||+|+++.
T Consensus 68 ~ec~~~~F~----ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~ 141 (361)
T KOG4777|consen 68 EECTADSFN----ECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKM 141 (361)
T ss_pred hhcChhhcc----cccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCCC
Confidence 344566653 89999999998888887777888887 99999853 57999999999999874
Q ss_pred -CCCeEecCCchhhhHHHHHHHHHhhc-CeeEEEEeeeeccccchhhhhhchhhhhhhHhhhcccCCCCCChHH----HH
Q 015637 211 -DEPIISNASCTTNCLAPFVKVLDQKF-GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAK----AV 284 (403)
Q Consensus 211 -~~~IISnaSCTTn~Lap~lk~L~~~f-GI~~~~~TTiha~tg~q~~~D~~~~d~r~~r~~a~NIIP~~tGaak----av 284 (403)
...||+|+||+|..++..|||||++| .|++..++||||+||++..... ..-.+..||+|.+.|... +.
T Consensus 142 ~~G~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG~apgv------~~vdildnilp~iggee~k~ewet 215 (361)
T KOG4777|consen 142 GKGAIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAGAAPGV------ELVDILDNILPGIGGEENKFEWET 215 (361)
T ss_pred CCceEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccCCcCCCc------hHHHHHHhhcCCCCccchhhhHHH
Confidence 13699999999999999999999999 7999999999999998642211 123478899999987643 33
Q ss_pred HHhccccC-----------CceeEEEEecccccccEEEEEEEEccCC--CHHHHHHHHHhcc
Q 015637 285 ALVLPALK-----------GKLNGIALRVPTPNVSVVDLVVQVSKKT--FAEEVNAAFRESA 333 (403)
Q Consensus 285 ~kVlPeL~-----------gkl~~~avRVPv~~gs~~dl~v~~~k~~--s~eeI~~al~~aa 333 (403)
.|+|-.++ .++++.|-|||+.++|+..+..+|..++ +.+++.+++.++.
T Consensus 216 ~kiL~s~n~~i~~~~l~ee~~vsaqcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l~eyv 277 (361)
T KOG4777|consen 216 AKILFSHNAPILDNGLNEEEMVSAQCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLLFEYV 277 (361)
T ss_pred HHhhhccCCccccccccHHHhhhhhcceeeEecCceEEEEEEeecCCCCcHHHHHHHHHhcc
Confidence 56653221 2477899999999999999999998554 5899999999886
No 39
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.88 E-value=9.6e-22 Score=195.41 Aligned_cols=219 Identities=14% Similarity=0.071 Sum_probs=162.9
Q ss_pred CceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEe
Q 015637 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (403)
Q Consensus 67 m~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~ 145 (403)
|++||||+| +|.+|+.++|+|.+|| +++++++... .+..+
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp--~~~l~~~~s~--------------------------~~~~~----------- 41 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRS--DIELLSIPEA--------------------------KRKDA----------- 41 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCC--CeEEEEEecC--------------------------CCCcc-----------
Confidence 789999999 9999999999999997 5998766431 01101
Q ss_pred cCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCC----CCCCeEEeecCccCCCC--CCCeEecCC
Q 015637 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKP--DEPIISNAS 219 (403)
Q Consensus 146 ~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~----~dvp~vV~gVN~~~~~~--~~~IISnaS 219 (403)
.+....|. ++|+||.|++...++++++...++|+ +||+.+++ +++|..+||+|++..+. ..++|+||+
T Consensus 42 --~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPg 115 (313)
T PRK11863 42 --AARRELLN--AADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPG 115 (313)
T ss_pred --cCchhhhc--CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCC
Confidence 01112343 68999999999999999998888888 79988863 47999999999875432 468999999
Q ss_pred chhhhHHHHHHHHHhhcCeeEEEEeeeeccc---cchh-hhhhchhhhhhhHhhhcccCCCCCC-h---HHHHHHhcccc
Q 015637 220 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYT---GDQR-LLDASHRDLRRARAAALNIVPTSTG-A---AKAVALVLPAL 291 (403)
Q Consensus 220 CTTn~Lap~lk~L~~~fGI~~~~~TTiha~t---g~q~-~~D~~~~d~r~~r~~a~NIIP~~tG-a---akav~kVlPeL 291 (403)
|.++++...|+||+++..|++..+++++++| |+++ ..+..+.+ . -.+..|++|+.-| . ..|+.+.|..+
T Consensus 116 C~~Ta~~laL~PL~~~~li~~~~~i~i~a~SG~SGAG~~~~~~~~~~--~-~~~~~n~~~Y~~~~~HrH~pEi~~~l~~~ 192 (313)
T PRK11863 116 CYPTGAIALLRPLVDAGLLPADYPVSINAVSGYSGGGKAMIAAYEAA--P-DGKAPAFRLYGLGLAHKHLPEMQAHAGLA 192 (313)
T ss_pred cHHHHHHHHHHHHHHcCCcccCceEEEEEccccccCCccchHHHhhh--h-hhhccCeeeccCCcCCcchHHHHHHhccc
Confidence 9999999999999997666666578899996 5543 22222100 0 1257899999866 3 34566666433
Q ss_pred CCceeEEEEecccccccEEEEEEEE---ccCCCHHHHHHHHHhccc
Q 015637 292 KGKLNGIALRVPTPNVSVVDLVVQV---SKKTFAEEVNAAFRESAD 334 (403)
Q Consensus 292 ~gkl~~~avRVPv~~gs~~dl~v~~---~k~~s~eeI~~al~~aa~ 334 (403)
-++.-+..-+|+.+|++..+++++ +++++.+|+.++++++-+
T Consensus 193 -~~~~F~Phl~p~~rGil~Ti~~~~~~~~~~~~~~~i~~~~~~~Y~ 237 (313)
T PRK11863 193 -RRPIFTPSVGNFRQGMLVTVPLHLRLLPGGPTAEDLHAALADHYA 237 (313)
T ss_pred -cCcEEEeeEccccCcEEEEEEEEecccCCCCCHHHHHHHHHHHcC
Confidence 123334445899999999999997 888999999999998743
No 40
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.79 E-value=4.3e-18 Score=168.79 Aligned_cols=218 Identities=13% Similarity=0.077 Sum_probs=162.1
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
.||+|.| .|-.|..++|+|..|| ++|++.+... + . +...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP--~~el~~l~s~-------------~--------------~-----------~~~~ 41 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRD--DIELLSIAPD-------------R--------------R-----------KDAA 41 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCC--CeEEEEEecc-------------c--------------c-----------cCcC
Confidence 4899999 9999999999999997 4998877531 0 0 0011
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCC----CCCCeEEeecCccCCCC--CCCeEecCCch
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKP--DEPIISNASCT 221 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~----~dvp~vV~gVN~~~~~~--~~~IISnaSCT 221 (403)
+++++ + .++|+||.|++...++++++...++|+ +||+.+++ ++.|..+||+|++..+. ..++|+||+|.
T Consensus 42 ~~~~~-~--~~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~ 116 (310)
T TIGR01851 42 ERAKL-L--NAADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCY 116 (310)
T ss_pred CHhHh-h--cCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCH
Confidence 12222 1 268999999999999999988888888 78988753 47999999998775432 46899999999
Q ss_pred hhhHHHHHHHHHhhcCeeEEEEeeeecccc---chh-hhhhchhhhhhhHhhhcccCCCCCC----hHHHHHHhccccCC
Q 015637 222 TNCLAPFVKVLDQKFGIIKGTMTTTHSYTG---DQR-LLDASHRDLRRARAAALNIVPTSTG----AAKAVALVLPALKG 293 (403)
Q Consensus 222 Tn~Lap~lk~L~~~fGI~~~~~TTiha~tg---~q~-~~D~~~~d~r~~r~~a~NIIP~~tG----aakav~kVlPeL~g 293 (403)
+++++..|+||+++..|++...+++++.|| +++ ..+..++..+.. ....|+-|+.-+ ...|+.+.+..+ -
T Consensus 117 aTa~~LaL~PL~~~~li~~~~~~~~~a~SG~SGAGr~~~~~l~~q~~~~-e~~~~~~~Y~~~~~HrH~pEi~q~l~~~-~ 194 (310)
T TIGR01851 117 PTGFIALMRPLVEAGILPADFPITINAVSGYSGGGKAMIADYEQGSADN-PSLQPFRIYGLALTHKHLPEMRVHSGLA-L 194 (310)
T ss_pred HHHHHHHHHHHHHcCCccccceEEEEeccccCccChhhhHHhhhcccch-hhccCceeccCCCCCCcHHHHHHHhCCC-C
Confidence 999999999999987777776799999987 443 233222111101 135677777543 234555555332 3
Q ss_pred ceeEEEEecccccccEEEEEEEE---ccCCCHHHHHHHHHhcc
Q 015637 294 KLNGIALRVPTPNVSVVDLVVQV---SKKTFAEEVNAAFRESA 333 (403)
Q Consensus 294 kl~~~avRVPv~~gs~~dl~v~~---~k~~s~eeI~~al~~aa 333 (403)
++.-+..-+|...|-+..+++.+ +++++.+|+.++++++=
T Consensus 195 ~v~FtPhl~p~~RGil~Ti~~~l~~~~~~~~~~~~~~~~~~~Y 237 (310)
T TIGR01851 195 PPIFTPAVGNFAQGMAVTIPLHLQTLASKVSPADIHAALADYY 237 (310)
T ss_pred CEEEEeEEccccCcEEEEEEEEeccCCCCCCHHHHHHHHHHHH
Confidence 47777888999999999999999 88899999999999863
No 41
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.62 E-value=1.2e-15 Score=150.95 Aligned_cols=232 Identities=19% Similarity=0.153 Sum_probs=145.8
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
++||||+|+|.||+.++..+...+ +++++++-|. +++.- .+++-..+|. . ..++|.+- ++
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~--~velvAVvdi-d~es~--gla~A~~~Gi-----~------~~~~~ie~-LL--- 63 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSE--HLEPGAMVGI-DPESD--GLARARRLGV-----A------TSAEGIDG-LL--- 63 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCC--CcEEEEEEeC-ChhhH--HHHHHHHcCC-----C------cccCCHHH-HH---
Confidence 689999999999999888877654 5999999874 33211 1111111221 0 00111100 11
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCCCCCCeEEeecCccCCCC--CCCeEecCCchhhhH
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP--DEPIISNASCTTNCL 225 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~~dvp~vV~gVN~~~~~~--~~~IISnaSCTTn~L 225 (403)
++.+|. ++|+||+|||....++++++.+++|+ .||+..+.-..|++||+||.+.+.. ..++|+||+|+|+.+
T Consensus 64 --~~~~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~~ 137 (302)
T PRK08300 64 --AMPEFD--DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATIPI 137 (302)
T ss_pred --hCcCCC--CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHHHH
Confidence 112343 69999999999999999999999987 7787765446899999999997654 368999999999999
Q ss_pred HHHHHHHHhhcCeeEEEEeeeeccc-cc--hhhhhhchhhhhhhHhhhcccCCCCCChHHHHHHhccccCCceeEEEEec
Q 015637 226 APFVKVLDQKFGIIKGTMTTTHSYT-GD--QRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRV 302 (403)
Q Consensus 226 ap~lk~L~~~fGI~~~~~TTiha~t-g~--q~~~D~~~~d~r~~r~~a~NIIP~~tGaakav~kVlPeL~gkl~~~avRV 302 (403)
+..|+++++. ++.++. +||++.| |. ..-+|......+ ..|-..+|+.+ +|.+--|+.---.+-+|
T Consensus 138 v~Al~~v~~~-~~~eIv-at~~s~s~g~gtr~nidE~~~~t~-------~~~~~~~g~~~--~kai~~~npa~p~~~m~- 205 (302)
T PRK08300 138 VAAVSRVAPV-HYAEIV-ASIASKSAGPGTRANIDEFTETTS-------RAIEKVGGAAR--GKAIIILNPAEPPLIMR- 205 (302)
T ss_pred HHHhcccCcC-ceeeee-eeehhhccCCcccccHHHHHHHHH-------HHHHHhcCccc--ceEEEEecCCCCCccce-
Confidence 9999998765 888887 9999998 43 345554322111 11222344432 23221111110011122
Q ss_pred ccccccEEEEEEEEccCCCHHHHHHHHHhcccccCcCccccc
Q 015637 303 PTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVC 344 (403)
Q Consensus 303 Pv~~gs~~dl~v~~~k~~s~eeI~~al~~aa~~~lkgil~~~ 344 (403)
-.+++..+.+.+.+.|.+.+.+..+.=..=+.||.
T Consensus 206 -------~tv~~~~~~~~~~~~i~~~~~~~~~~v~~yvpgy~ 240 (302)
T PRK08300 206 -------DTVYCLVDEDADQDAIEASVHAMVAEVQAYVPGYR 240 (302)
T ss_pred -------eeEEEeeCCCCCHHHHHHHHHHHHHHHHhhCCCEE
Confidence 13455556668889998888776543222334443
No 42
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.44 E-value=1.8e-12 Score=127.75 Aligned_cols=161 Identities=21% Similarity=0.197 Sum_probs=112.9
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
++||||+|.|+||+..+..+.+.+ ++++++|-+. +++... +++...+| -...+++.+.-+ .
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~--~~elvaV~d~-d~es~~--la~A~~~G-----------i~~~~~~~e~ll---~ 61 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSE--HLEMVAMVGI-DPESDG--LARARELG-----------VKTSAEGVDGLL---A 61 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCC--CcEEEEEEeC-CcccHH--HHHHHHCC-----------CCEEECCHHHHh---c
Confidence 479999999999998877666543 4999999874 332110 00000011 111122211111 1
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCCCCCCeEEeecCccCCCC--CCCeEecCCchhhhH
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP--DEPIISNASCTTNCL 225 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~~dvp~vV~gVN~~~~~~--~~~IISnaSCTTn~L 225 (403)
+ .++|+||+||+.....+.+...+++|. .||+..+.-..|++||+||.+.... ..++|++++|.|+.+
T Consensus 62 ~--------~dIDaV~iaTp~~~H~e~a~~al~aGk--~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~ 131 (285)
T TIGR03215 62 N--------PDIDIVFDATSAKAHARHARLLAELGK--IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPI 131 (285)
T ss_pred C--------CCCCEEEECCCcHHHHHHHHHHHHcCC--EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHH
Confidence 1 268999999999999999999999887 5665544336899999999886553 468999999999999
Q ss_pred HHHHHHHHhhcCeeEEEEeeeecccc-c--hhhhhhc
Q 015637 226 APFVKVLDQKFGIIKGTMTTTHSYTG-D--QRLLDAS 259 (403)
Q Consensus 226 ap~lk~L~~~fGI~~~~~TTiha~tg-~--q~~~D~~ 259 (403)
+..++.+++...+ ..++||++.|+ . ...+|..
T Consensus 132 ~~al~r~~d~~~~--~iv~ti~s~S~g~g~r~~idel 166 (285)
T TIGR03215 132 VAAISRVAPVHYA--EIVASIASRSAGPGTRANIDEF 166 (285)
T ss_pred HHHHHHhhccccE--EEEEEEEeeccCCCchhHHHHH
Confidence 9999999998755 56788999996 3 3455643
No 43
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.23 E-value=1.1e-09 Score=109.90 Aligned_cols=236 Identities=17% Similarity=0.156 Sum_probs=153.5
Q ss_pred CceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecC--CChhHHhhhccccceecccCcceeeecCCeEEECCEEEEE
Q 015637 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDT--GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (403)
Q Consensus 67 m~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~--~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v 143 (403)
|++||+|+| .|-.|-+++|+|.+||+ +|+..+... .+.. +...|..+.+.+ .+++
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~--ve~~~~ss~~~~g~~-------~~~~~p~l~g~~-------------~l~~ 58 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPD--VELILISSRERAGKP-------VSDVHPNLRGLV-------------DLPF 58 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC--eEEEEeechhhcCCc-------hHHhCccccccc-------------cccc
Confidence 578999999 99999999999999984 886555431 1110 011111111100 1111
Q ss_pred EecCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCC---CC-------------C----CeEE---
Q 015637 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK---GD-------------I----PTYV--- 200 (403)
Q Consensus 144 ~~~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~---~d-------------v----p~vV--- 200 (403)
+..|++.+ ...++|+||-|+....+++.++..++.|++ ||+.+.+ .| . .--|
T Consensus 59 -~~~~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~--VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGL 133 (349)
T COG0002 59 -QTIDPEKI--ELDECDVVFLALPHGVSAELVPELLEAGCK--VIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGL 133 (349)
T ss_pred -ccCChhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCe--EEECCcccccCCHHHHHHhhCCCCCCchhhhcccccC
Confidence 23345544 233689999999999999999999988884 8876642 10 0 1222
Q ss_pred eecCccCCCCCCCeEecCCchhhhHHHHHHHHHhhc--CeeE-EEEeeeeccccchhhhh-hchhhhhhhHhhhcccCCC
Q 015637 201 VGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKF--GIIK-GTMTTTHSYTGDQRLLD-ASHRDLRRARAAALNIVPT 276 (403)
Q Consensus 201 ~gVN~~~~~~~~~IISnaSCTTn~Lap~lk~L~~~f--GI~~-~~~TTiha~tg~q~~~D-~~~~d~r~~r~~a~NIIP~ 276 (403)
||.|.+++. ..+.|+||.|-.+|....|+||-++- .++. ..+-..--+||+++-+- ..+- -....|+.|+
T Consensus 134 pEl~~e~i~-~A~lIAnPGCypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~~~-----~e~~~~~~~Y 207 (349)
T COG0002 134 PELHREKIR-GAKLIANPGCYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKNHF-----PEVNDSLRPY 207 (349)
T ss_pred cccCHHHHh-cCCEeeCCCchHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCccccccc-----hhhccccccc
Confidence 345555444 35799999999999999999998762 2333 23444444555543221 1111 1134588888
Q ss_pred C---CChHHHHHHhccccC---CceeEEEEecccccccEEEEEEEEccCCCHHHHHHHHHhcccc
Q 015637 277 S---TGAAKAVALVLPALK---GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADN 335 (403)
Q Consensus 277 ~---tGaakav~kVlPeL~---gkl~~~avRVPv~~gs~~dl~v~~~k~~s~eeI~~al~~aa~~ 335 (403)
. +-...|+.+-+..+. .++.-+..-+|...|-+..+++.+++.++.+||.++++++=++
T Consensus 208 ~~~~HrH~pEi~q~l~~l~~~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~~~Y~~ 272 (349)
T COG0002 208 GLTGHRHTPEIEQHLGRLAGRKVPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYEEFYAG 272 (349)
T ss_pred cccccCchHHHHHHhhhcccCcCceEEecccccccceEEEEEEEecCCCCCHHHHHHHHHHHhCC
Confidence 4 333456666565554 3356667779999999999999999999999999999987543
No 44
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=99.08 E-value=9.2e-11 Score=101.01 Aligned_cols=114 Identities=26% Similarity=0.308 Sum_probs=78.6
Q ss_pred eEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCC
Q 015637 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (403)
Q Consensus 70 kVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~d 148 (403)
||||+| +|.+|+.++|+|.++| +++++.+-.... ....++...++.+. +...+.+.. .+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp--~~e~~~~~~~~~----~~g~~~~~~~~~~~-------------~~~~~~~~~-~~ 60 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHP--DFELVALVSSSR----SAGKPLSEVFPHPK-------------GFEDLSVED-AD 60 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTS--TEEEEEEEESTT----TTTSBHHHTTGGGT-------------TTEEEBEEE-TS
T ss_pred CEEEECCCCHHHHHHHHHHhcCC--CccEEEeeeecc----ccCCeeehhccccc-------------cccceeEee-cc
Confidence 799999 9999999999999987 599988865311 01111122222111 011233322 33
Q ss_pred CCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCC----CCCCeEEeecCccCCC
Q 015637 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYK 209 (403)
Q Consensus 149 p~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~----~dvp~vV~gVN~~~~~ 209 (403)
++.+ .++|+||.|++...+++.++..+++|+ .||+.++. ++.|+++||||.+++.
T Consensus 61 ~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 61 PEEL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp GHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred hhHh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 4333 389999999999999999999999999 88988763 4799999999988753
No 45
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=99.04 E-value=5.2e-10 Score=103.45 Aligned_cols=103 Identities=18% Similarity=0.230 Sum_probs=78.4
Q ss_pred HHHHHhh-cCeeEEEEeeeeccccchh-hhhhch------------hhhhhhHhhhcccCCCCCC-------hHHHH---
Q 015637 229 VKVLDQK-FGIIKGTMTTTHSYTGDQR-LLDASH------------RDLRRARAAALNIVPTSTG-------AAKAV--- 284 (403)
Q Consensus 229 lk~L~~~-fGI~~~~~TTiha~tg~q~-~~D~~~------------~d~r~~r~~a~NIIP~~tG-------aakav--- 284 (403)
|+||+++ ++++++.++|+|++||+++ .++... ++......+++|++|+..+ +.+++
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~ 80 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM 80 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence 6899998 9999999999999999965 344210 1122346799999999754 22322
Q ss_pred ----HHhccccCCceeEEEEecccccccEEEEEEEEc-cCCCHHHHHHHHHhc
Q 015637 285 ----ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVS-KKTFAEEVNAAFRES 332 (403)
Q Consensus 285 ----~kVlPeL~gkl~~~avRVPv~~gs~~dl~v~~~-k~~s~eeI~~al~~a 332 (403)
.+++..- .+++.+|+|||+++||+..++++++ ++.+.+++.++|.+.
T Consensus 81 ~~~~~~~l~~~-~~v~~t~~~vPv~rG~~~ti~v~~~~~~~~~~~~~~~~~~~ 132 (184)
T PF02774_consen 81 IAETRKILGFP-PRVSFTCVRVPVFRGHLATIYVELKETPVDVEEIYEAFYKG 132 (184)
T ss_dssp HHHHHHHCTET-TEEEEEEEEESSSSEEEEEEEEEESSSHHHHHHHHHHHHTS
T ss_pred hccccceeecc-ccccccEEEEeeeeeEceeEEEEecCCHHHHHHHHHHHhCC
Confidence 2333322 3799999999999999999999995 888899999998876
No 46
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.29 E-value=1.8e-06 Score=74.03 Aligned_cols=115 Identities=28% Similarity=0.303 Sum_probs=68.5
Q ss_pred eEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCC
Q 015637 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (403)
Q Consensus 70 kVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~d 148 (403)
||||.| +|++|+.+++.+.+.+ .++++++-.. + ......++ ..+ .++ .+ + ++ .+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~--~~~l~av~~~-~-~~~~~~~~--~~~------------~~~--~~--~-~~--~~ 55 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHP--DFEVVALAAS-A-RSAGKRVS--EAG------------PHL--KG--E-VV--LE 55 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCC--CceEEEEEec-h-hhcCcCHH--HHC------------ccc--cc--c-cc--cc
Confidence 689999 7999999999998875 3999888432 1 10000000 001 000 00 0 01 11
Q ss_pred CCCCCCCCcCccEEeeCCCCcCCHhhHHHHHH-cCCCeEEEcCCCC----CCCCeEEeecCccCCC
Q 015637 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQ-AGAKKVLITAPGK----GDIPTYVVGVNADAYK 209 (403)
Q Consensus 149 p~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~-aGakkVIIsaps~----~dvp~vV~gVN~~~~~ 209 (403)
.+...|.+.+.|+||.|++.....+.....+. +..+++||+.++. ++.|+.+|++|.+.++
T Consensus 56 ~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~~viD~s~~~~~~~~~~~~~~~~n~~~~~ 121 (122)
T smart00859 56 LEPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSSAFRMDDDVPYGLPEVNPEAIK 121 (122)
T ss_pred cccCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCCEEEECCccccCCCCceEEcCccCHHHhc
Confidence 22223444588999999988766664332221 2344589976652 4689999999987653
No 47
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.01 E-value=5.9e-06 Score=80.88 Aligned_cols=149 Identities=15% Similarity=0.187 Sum_probs=89.0
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEec
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~ 146 (403)
|++||||+|+|.||+.+.+.|.......+++++|++. +++....+. +. .++ .
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~-~~~~~~~~~-----------------~~--------~~~--~ 52 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN-AADLPPALA-----------------GR--------VAL--L 52 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecC-CHHHHHHhh-----------------cc--------Ccc--c
Confidence 6789999999999999999987643335899999874 221111111 11 112 1
Q ss_pred CCCCCC-CCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCC-CCCCCeEEeecCccCCCCCCCeEecCCchhhh
Q 015637 147 RNPVNL-PWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG-KGDIPTYVVGVNADAYKPDEPIISNASCTTNC 224 (403)
Q Consensus 147 ~dp~~i-~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps-~~dvp~vV~gVN~~~~~~~~~IISnaSCTTn~ 224 (403)
.+++++ .| ..|+|+||.|...-++++++.|++|..-+|+|-.. .| +-+-..+-.- ......=|--||-..-+
T Consensus 53 ~~l~~ll~~---~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD--~~~~~~l~~~-A~~~g~~i~ipSGAigG 126 (267)
T PRK13301 53 DGLPGLLAW---RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALAD--DALRARLIAA-AEAGGARIRVPAGAIAG 126 (267)
T ss_pred CCHHHHhhc---CCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcC--HHHHHHHHHH-HHhCCCEEEEeChHHHh
Confidence 345553 44 58999999999999999999999999887777432 22 1010000000 00012223334544444
Q ss_pred HHHHHHHHHhhcCeeEEEEeeeecccc
Q 015637 225 LAPFVKVLDQKFGIIKGTMTTTHSYTG 251 (403)
Q Consensus 225 Lap~lk~L~~~fGI~~~~~TTiha~tg 251 (403)
|- .|+.. ...|+.++.+||.-+..+
T Consensus 127 lD-~l~aa-~~~~~~~v~~~t~K~P~s 151 (267)
T PRK13301 127 LD-YLQAV-AGRDDAEVVYESRKPVAA 151 (267)
T ss_pred HH-HHHHh-hccCceEEEEEEecChhH
Confidence 43 23332 347899999888755433
No 48
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=97.78 E-value=0.00037 Score=67.47 Aligned_cols=258 Identities=21% Similarity=0.240 Sum_probs=136.4
Q ss_pred cccccCceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec--CCChhHHhhhccccceecccCcceeeecCCeEEECC
Q 015637 62 KVAAQAKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND--TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG 138 (403)
Q Consensus 62 ~~~~~m~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd--~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G 138 (403)
++..+..+|||..| -|--|+.++|++..+| +|||..+.. +.+.+ |+ +-++ ..+. ...+..
T Consensus 13 ~~~~~k~~rv~LlGArGYTGknlv~Lin~HP--ylevthvssrel~Gqk-----l~-~ytk----~eiq---y~~lst-- 75 (340)
T KOG4354|consen 13 SVKPEKDIRVGLLGARGYTGKNLVRLINNHP--YLEVTHVSSRELAGQK-----LE-VYTK----LEIQ---YADLST-- 75 (340)
T ss_pred ccccCCCceEEEEeccccchhhHHHHhcCCC--ceEEEeeehhhhcCCc-----cc-Ccch----hhee---ecccch--
Confidence 34566779999999 8999999999999987 699877653 11110 00 0000 0000 000110
Q ss_pred EEEEEEecCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCC-CCCC--eEE---eecCcc-CCCCC
Q 015637 139 KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK-GDIP--TYV---VGVNAD-AYKPD 211 (403)
Q Consensus 139 ~~I~v~~~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~-~dvp--~vV---~gVN~~-~~~~~ 211 (403)
.|...+. ...-+|..+.+...-.-+.+...-....-|-++|+-..+ --.| -.+ ||.|+. ++. .
T Consensus 76 --------~D~~kle-e~~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~-n 145 (340)
T KOG4354|consen 76 --------VDAVKLE-EPHAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIK-N 145 (340)
T ss_pred --------hhHHHhh-cCCceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHh-h
Confidence 1111111 112356666666554444444433334445567754432 0233 344 456643 343 3
Q ss_pred CCeEecCCchhhh----HHHHHHHHHhhcCeeEEEEeeeeccccchhhhhhchhhhhhhHhhhcccCCCCCChHHHHHHh
Q 015637 212 EPIISNASCTTNC----LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALV 287 (403)
Q Consensus 212 ~~IISnaSCTTn~----Lap~lk~L~~~fGI~~~~~TTiha~tg~q~~~D~~~~d~r~~r~~a~NIIP~~tGaakav~kV 287 (403)
.+.|+||.|-.+. |.|++|.+.-+- + +-.+--|||++.-. +.+. .-.-+++|+||+.-.--..++.|
T Consensus 146 a~~iaNPGCYaTgsQl~l~Pllk~i~g~p---~--ifgvSGySGAGtkp--spkN--d~~~l~nnlipY~ltdHiHerEI 216 (340)
T KOG4354|consen 146 ARLIANPGCYATGSQLPLVPLLKAILGKP---E--IFGVSGYSGAGTKP--SPKN--DYSELANNLIPYGLTDHIHEREI 216 (340)
T ss_pred hhhccCCCcccccCcccchHHHHHhcCCc---c--eeeeccccCCCCCC--CCcc--CHHHHhcCCccccccccchhHhH
Confidence 5789999996543 567777654322 2 22334566664321 1121 12348999999852111111222
Q ss_pred ccccCCceeEEEEecccccccEEEEEEEEccCCCHHHHHHHHHhcccc-cCcCcccccCCCceeecCCCCCc
Q 015637 288 LPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDFRCSDV 358 (403)
Q Consensus 288 lPeL~gkl~~~avRVPv~~gs~~dl~v~~~k~~s~eeI~~al~~aa~~-~lkgil~~~~~p~VS~D~~~~~~ 358 (403)
--.++-.+.-+.--.|-+.|-...+++.+++.++.||+++.++..=|+ +|--++ .|-|+| -|..|.-|
T Consensus 217 s~r~k~~VaF~PHv~qwfqGi~lTi~vpmkksv~~~elr~lyk~~YedE~lvhV~--ddvPlv-kdv~gsh~ 285 (340)
T KOG4354|consen 217 SQRSKVTVAFTPHVMQWFQGIQLTIYVPMKKSVRTEELRQLYKTSYEDEELVHVL--DDVPLV-KDVRGSHY 285 (340)
T ss_pred HHhhCCceeechhHHHHhhhceEEEEEeecCcccHHHHHHHHHhhccCcceeeee--ccccce-eccCCcce
Confidence 112222232233334556666677888999999999999999987554 343333 334554 45666443
No 49
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.68 E-value=0.00085 Score=67.72 Aligned_cols=88 Identities=18% Similarity=0.259 Sum_probs=60.1
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
++||||+|+|.|||.+++++..++ ++++|+|-+.-+++.+. . . +.++...
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~p--d~ELVgV~dr~~~~~~~-----~--------~---------------~~v~~~~ 52 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQP--DMELVGVFSRRGAETLD-----T--------E---------------TPVYAVA 52 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCC--CcEEEEEEcCCcHHHHh-----h--------c---------------CCccccC
Confidence 589999999999999999998875 49999997742222111 0 0 0011111
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEc
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIs 189 (403)
|... +. .++|+|+-|++.....+.+...+++|. .||.+
T Consensus 53 d~~e--~l-~~iDVViIctPs~th~~~~~~~L~aG~-NVV~s 90 (324)
T TIGR01921 53 DDEK--HL-DDVDVLILCMGSATDIPEQAPYFAQFA-NTVDS 90 (324)
T ss_pred CHHH--hc-cCCCEEEEcCCCccCHHHHHHHHHcCC-CEEEC
Confidence 1111 11 368999999999999999999999887 24444
No 50
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.56 E-value=0.0001 Score=72.00 Aligned_cols=91 Identities=24% Similarity=0.293 Sum_probs=59.4
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCC-ChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~-~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
|||||.|+|+||+.+++.+...+ .++++++-+.. ..+.... .. +. .+.++ .
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~--~~~l~~v~~~~~~~~~~~~-------------~~----~~-------~~~~~--~ 53 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDP--DLRVDWVIVPEHSIDAVRR-------------AL----GE-------AVRVV--S 53 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCC--CceEEEEEEcCCCHHHHhh-------------hh----cc-------CCeee--C
Confidence 69999999999999999998765 48888776420 1110000 00 00 12232 3
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCC
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsap 191 (403)
+.+.+ +..+|+|+|||+...-.+.+...+++|.. |++-.+
T Consensus 54 d~~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~-Vvi~s~ 93 (265)
T PRK13303 54 SVDAL---PQRPDLVVECAGHAALKEHVVPILKAGID-CAVISV 93 (265)
T ss_pred CHHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCC-EEEeCh
Confidence 34444 23689999999988888999999999863 444333
No 51
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.51 E-value=0.0004 Score=70.37 Aligned_cols=37 Identities=32% Similarity=0.589 Sum_probs=30.8
Q ss_pred CceeEEEEccChhHHHHHHHHHcCC-------CCCceEEEEecC
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLEVVAINDT 103 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~-------~~~~evvaInd~ 103 (403)
|++||||.|+|.||+.+++.|.+++ .-+++||+|.|.
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~ 44 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADS 44 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 7899999999999999999997652 114899999873
No 52
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.42 E-value=0.00038 Score=66.77 Aligned_cols=142 Identities=23% Similarity=0.211 Sum_probs=85.7
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~d 148 (403)
++|+|+|+|+||+.+++.+.+.+ .+|+++++-|. +.+..-++.+ + +.++ .
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~-~~~e~v~v~D~-~~ek~~~~~~--~------------------~~~~--------~ 50 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGR-VDFELVAVYDR-DEEKAKELEA--S------------------VGRR--------C 50 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCC-cceeEEEEecC-CHHHHHHHHh--h------------------cCCC--------c
Confidence 58999999999999999998653 45999999884 3443333331 1 1111 1
Q ss_pred CCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCCCCCCeE------EeecCccCCCCCCCeEecCCchh
Q 015637 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTY------VVGVNADAYKPDEPIISNASCTT 222 (403)
Q Consensus 149 p~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~~dvp~v------V~gVN~~~~~~~~~IISnaSCTT 222 (403)
+.++|---.++|+++||++.---+++.++.|++|..-+|+|-..-. +|=+ +...+ ..-|--||-..
T Consensus 51 ~s~ide~~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGALa-d~~l~erl~~lak~~-------~~rv~~pSGAi 122 (255)
T COG1712 51 VSDIDELIAEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGALA-DEGLRERLRELAKCG-------GARVYLPSGAI 122 (255)
T ss_pred cccHHHHhhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechhcc-ChHHHHHHHHHHhcC-------CcEEEecCccc
Confidence 1112111137899999999888889999999999987777654311 1100 11111 12233333333
Q ss_pred hhHHHHHHHHHhhcCeeEEEEeeeeccc
Q 015637 223 NCLAPFVKVLDQKFGIIKGTMTTTHSYT 250 (403)
Q Consensus 223 n~Lap~lk~L~~~fGI~~~~~TTiha~t 250 (403)
-+|- +|+.+ ..-+|+++..||.-...
T Consensus 123 GGlD-~l~aa-r~g~i~~V~lttrKpp~ 148 (255)
T COG1712 123 GGLD-ALAAA-RVGGIEEVVLTTRKPPA 148 (255)
T ss_pred hhHH-HHHHh-hcCCeeEEEEEeecChH
Confidence 3332 23332 22589999999887654
No 53
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.15 E-value=0.00082 Score=58.30 Aligned_cols=92 Identities=21% Similarity=0.198 Sum_probs=52.9
Q ss_pred eeEEEEcc-ChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 69 LKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 69 ikVaInGf-GrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
|||+|+|+ |++||.+++.+.+++ +++++++-+....++. .-|. |.+.+. ....+.++ .
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~--~~~lv~~v~~~~~~~~----g~d~--g~~~~~-----------~~~~~~v~--~ 59 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESP--GFELVGAVDRKPSAKV----GKDV--GELAGI-----------GPLGVPVT--D 59 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHST--TEEEEEEEETTTSTTT----TSBC--HHHCTS-----------ST-SSBEB--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC--CcEEEEEEecCCcccc----cchh--hhhhCc-----------CCcccccc--h
Confidence 69999996 999999999999975 4999999874221100 0011 111100 00011221 2
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCC
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGak 184 (403)
+.+.+- ..+|++||.|-.....+.++..++.|..
T Consensus 60 ~l~~~~---~~~DVvIDfT~p~~~~~~~~~~~~~g~~ 93 (124)
T PF01113_consen 60 DLEELL---EEADVVIDFTNPDAVYDNLEYALKHGVP 93 (124)
T ss_dssp -HHHHT---TH-SEEEEES-HHHHHHHHHHHHHHT-E
T ss_pred hHHHhc---ccCCEEEEcCChHHhHHHHHHHHhCCCC
Confidence 333321 1389999999666666777777777773
No 54
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.15 E-value=0.00064 Score=66.56 Aligned_cols=95 Identities=21% Similarity=0.288 Sum_probs=60.6
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
|||+|+| +|++|+.+++.+.+++ ++++|++-|..+++.. .+|. +.+.+.. . .| +.++ .
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~--~~elvav~d~~~~~~~----~~~~--~~~~~~~----~-----~g--v~~~--~ 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAE--GLQLVAAFERHGSSLQ----GTDA--GELAGIG----K-----VG--VPVT--D 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCC--CCEEEEEEecCCcccc----CCCH--HHhcCcC----c-----CC--ceee--C
Confidence 7999999 8999999999998775 4999999873222110 0110 1110000 0 01 2232 3
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEE
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVII 188 (403)
|++.+ ...+|+|+|+|......+.+...+++|.. +|+
T Consensus 61 d~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi 97 (266)
T TIGR00036 61 DLEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV 97 (266)
T ss_pred CHHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 34444 13589999999888888889999998863 444
No 55
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.10 E-value=0.00076 Score=70.36 Aligned_cols=95 Identities=26% Similarity=0.421 Sum_probs=56.7
Q ss_pred ceeEEEEccChhHHHHHHHHHcCC-------CCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEE
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRK-------DSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKV 140 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~-------~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~ 140 (403)
++||||.|+|.||+.++++|.+++ ..+++|++|-+. +++.. .-+ . ..+
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~-~~~~~-~~~-------------~--------~~~-- 57 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR-DLEKD-RGV-------------D--------LPG-- 57 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC-Chhhc-cCC-------------C--------Ccc--
Confidence 589999999999999999987652 124889988763 11110 000 0 000
Q ss_pred EEEEecCCCCCCCCCCcCccEEeeCCCCc-CCHhhHHHHHHcCCCeEEEcCC
Q 015637 141 IQVVSNRNPVNLPWGDLGIDLVIEGTGVF-VDREGAGKHIQAGAKKVLITAP 191 (403)
Q Consensus 141 I~v~~~~dp~~i~w~~~gvDiV~e~tG~f-~s~~~a~~hl~aGakkVIIsap 191 (403)
..++ .|++++ ..+.++|+|+||||.. ...++....+++|. .||..++
T Consensus 58 ~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk-hVVtaNK 105 (426)
T PRK06349 58 ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK-HVVTANK 105 (426)
T ss_pred ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC-eEEEcCH
Confidence 1111 223222 1234789999999763 34567778888874 4444444
No 56
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.07 E-value=0.0022 Score=63.01 Aligned_cols=86 Identities=22% Similarity=0.231 Sum_probs=57.1
Q ss_pred ceeEEEEccChhHHHHHHHHHcC-CCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEec
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGR-KDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~-~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~ 146 (403)
++||||+|+|+||+.+++.|... + .+++++|-|. +++....+.+ .+|. . .. .
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~--~~el~aV~dr-~~~~a~~~a~---~~g~----~---------------~~--~ 58 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLP--GLTLSAVAVR-DPQRHADFIW---GLRR----P---------------PP--V 58 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCC--CeEEEEEECC-CHHHHHHHHH---hcCC----C---------------cc--c
Confidence 58999999999999999998863 3 4899988874 3332211110 0110 0 00 0
Q ss_pred CCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCC
Q 015637 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (403)
Q Consensus 147 ~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGa 183 (403)
.+++++-. ++|+|++|++...-.+.+...+++|.
T Consensus 59 ~~~eell~---~~D~Vvi~tp~~~h~e~~~~aL~aGk 92 (271)
T PRK13302 59 VPLDQLAT---HADIVVEAAPASVLRAIVEPVLAAGK 92 (271)
T ss_pred CCHHHHhc---CCCEEEECCCcHHHHHHHHHHHHcCC
Confidence 23333321 57999999998888888888998875
No 57
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.99 E-value=0.0024 Score=62.38 Aligned_cols=89 Identities=26% Similarity=0.319 Sum_probs=59.0
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~d 148 (403)
|||||+|+|+||+.+++.+...+ ..+++++|-|. +++....+.+ . ++ ..++ .+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~-~~~elv~v~d~-~~~~a~~~a~------------~--------~~---~~~~--~~ 54 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGR-INAELYAFYDR-NLEKAENLAS------------K--------TG---AKAC--LS 54 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCC-CCeEEEEEECC-CHHHHHHHHH------------h--------cC---CeeE--CC
Confidence 69999999999999999988652 14899888874 3332222211 0 00 0111 23
Q ss_pred CCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEE
Q 015637 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (403)
Q Consensus 149 p~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVII 188 (403)
.+++. .++|+|++|++...-.+.++..+++|.. |++
T Consensus 55 ~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~-Vvv 90 (265)
T PRK13304 55 IDELV---EDVDLVVECASVNAVEEVVPKSLENGKD-VII 90 (265)
T ss_pred HHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCC-EEE
Confidence 33332 2689999999888888888888888864 444
No 58
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.84 E-value=0.0021 Score=62.56 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=56.2
Q ss_pred eeEEEEcc-ChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 69 LKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 69 ikVaInGf-GrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
|||+|+|. |++|+.+++.+.+.+ +++++++-|. +++.... . ....+.+ ..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~--~~elvav~d~-~~~~~~~-----------------~-------~~~~i~~--~~ 52 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAE--DLELVAAVDR-PGSPLVG-----------------Q-------GALGVAI--TD 52 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCC--CCEEEEEEec-CCccccc-----------------c-------CCCCccc--cC
Confidence 79999995 999999999998765 4999998774 1111000 0 0001111 12
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEE
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVII 188 (403)
|.+.+- . ++|+|+++|......+.+...+++|.. ||+
T Consensus 53 dl~~ll-~--~~DvVid~t~p~~~~~~~~~al~~G~~-vvi 89 (257)
T PRK00048 53 DLEAVL-A--DADVLIDFTTPEATLENLEFALEHGKP-LVI 89 (257)
T ss_pred CHHHhc-c--CCCEEEECCCHHHHHHHHHHHHHcCCC-EEE
Confidence 333321 1 589999999776678888899998874 344
No 59
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.84 E-value=0.0048 Score=60.49 Aligned_cols=98 Identities=26% Similarity=0.278 Sum_probs=60.7
Q ss_pred CceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeE-EECCEEEEEE
Q 015637 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGI-SVDGKVIQVV 144 (403)
Q Consensus 67 m~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l-~i~G~~I~v~ 144 (403)
|+|||+|+| .||.||.+++++.+.+ ++++++.=+..+.. + .|+ +.+.+ -++-..+.+.
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~--~~~L~aa~~~~~~~----~------~g~--------d~ge~~g~~~~gv~v~ 60 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAP--DLELVAAFDRPGSL----S------LGS--------DAGELAGLGLLGVPVT 60 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCC--CceEEEEEecCCcc----c------ccc--------chhhhccccccCceee
Confidence 458999999 7999999999999876 49988776531111 0 011 11111 1111123332
Q ss_pred ecCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEc
Q 015637 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (403)
Q Consensus 145 ~~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIs 189 (403)
.++. -...+.|++||-|-...+.+.++..++.|.+-||=|
T Consensus 61 --~~~~---~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGT 100 (266)
T COG0289 61 --DDLL---LVKADADVLIDFTTPEATLENLEFALEHGKPLVIGT 100 (266)
T ss_pred --cchh---hcccCCCEEEECCCchhhHHHHHHHHHcCCCeEEEC
Confidence 1211 123468999999988888899998898886444333
No 60
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.73 E-value=0.0037 Score=63.27 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=30.7
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCC-------CCceEEEEecC
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKD-------SPLEVVAINDT 103 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~-------~~~evvaInd~ 103 (403)
|++||+|.|||.||+.++|+|.++++ ..++|++|.+.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~ 45 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADR 45 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEec
Confidence 67999999999999999999987532 25788888763
No 61
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.72 E-value=0.003 Score=63.96 Aligned_cols=37 Identities=38% Similarity=0.619 Sum_probs=30.3
Q ss_pred CceeEEEEccChhHHHHHHHHHcCC-------CCCceEEEEecC
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLEVVAINDT 103 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~-------~~~~evvaInd~ 103 (403)
|++||+|.|||.||+.++++|.++. .-++.|++|.|.
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds 44 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDT 44 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 6799999999999999999987631 114889999873
No 62
>PRK06813 homoserine dehydrogenase; Validated
Probab=96.71 E-value=0.0043 Score=63.22 Aligned_cols=36 Identities=28% Similarity=0.586 Sum_probs=29.3
Q ss_pred CceeEEEEccChhHHHHHHHHHcCC-------CCCceEEEEec
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLEVVAIND 102 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~-------~~~~evvaInd 102 (403)
|+++|+|.|||.||+.++++|.++. .-++.|++|.+
T Consensus 1 ~~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~ 43 (346)
T PRK06813 1 MKIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLG 43 (346)
T ss_pred CeeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEe
Confidence 5799999999999999999997542 12478888876
No 63
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.71 E-value=0.0049 Score=62.33 Aligned_cols=35 Identities=31% Similarity=0.693 Sum_probs=28.7
Q ss_pred eeEEEEccChhHHHHHHHHHcCC-----CCCceEEEEecC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRK-----DSPLEVVAINDT 103 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~-----~~~~evvaInd~ 103 (403)
|||+|.|||.||+.+++.|.++. .-.++||+|.|.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 48999999999999999998741 124899999874
No 64
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.65 E-value=0.0048 Score=51.84 Aligned_cols=93 Identities=34% Similarity=0.438 Sum_probs=63.2
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhc-cccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLL-KYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll-~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
|||||+|+|.+|+..++.+.... +.+++++|-|. +++...... +|.. ..+ .
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~-~~~~v~~v~d~-~~~~~~~~~~~~~~------------------------~~~--~ 52 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS-PDFEVVAVCDP-DPERAEAFAEKYGI------------------------PVY--T 52 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT-TTEEEEEEECS-SHHHHHHHHHHTTS------------------------EEE--S
T ss_pred CEEEEECCcHHHHHHHHHHHhcC-CCcEEEEEEeC-CHHHHHHHHHHhcc------------------------cch--h
Confidence 69999999999999999998773 35999999985 333222111 1110 011 1
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCC
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsap 191 (403)
+.+++- .+.++|+|+-||+...-.+.+...+++|. .|++--|
T Consensus 53 ~~~~ll-~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP 94 (120)
T PF01408_consen 53 DLEELL-ADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKP 94 (120)
T ss_dssp SHHHHH-HHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESS
T ss_pred HHHHHH-HhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcC
Confidence 222221 12368999999999888888999999887 6666555
No 65
>PRK11579 putative oxidoreductase; Provisional
Probab=96.47 E-value=0.013 Score=58.87 Aligned_cols=92 Identities=25% Similarity=0.388 Sum_probs=60.8
Q ss_pred ceeEEEEccChhHHH-HHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEec
Q 015637 68 KLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (403)
Q Consensus 68 ~ikVaInGfGrIGr~-vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~ 146 (403)
++||||+|+|.||+. .++++...+ .+++++|.|. +.+... -+| + + +.++
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~--~~~l~av~d~-~~~~~~--~~~-------~--------------~--~~~~-- 53 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTP--GLELAAVSSS-DATKVK--ADW-------P--------------T--VTVV-- 53 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCC--CCEEEEEECC-CHHHHH--hhC-------C--------------C--Ccee--
Confidence 589999999999985 567776654 4999999884 333221 001 0 0 0111
Q ss_pred CCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCC
Q 015637 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (403)
Q Consensus 147 ~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsap 191 (403)
.|.+++- .+.++|+|+-||+...-.+.+...+++| |.|++--|
T Consensus 54 ~~~~ell-~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKP 96 (346)
T PRK11579 54 SEPQHLF-NDPNIDLIVIPTPNDTHFPLAKAALEAG-KHVVVDKP 96 (346)
T ss_pred CCHHHHh-cCCCCCEEEEcCCcHHHHHHHHHHHHCC-CeEEEeCC
Confidence 2222221 1236899999999999999999999998 45666545
No 66
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=96.44 E-value=0.0045 Score=63.83 Aligned_cols=111 Identities=19% Similarity=0.250 Sum_probs=63.8
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhcc-ccceecccCcceeeecCC---eE--EECCEEE
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGIFEADVKPVGTD---GI--SVDGKVI 141 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~-yDS~~G~f~~~v~~~~~~---~l--~i~G~~I 141 (403)
.||+|+| ||.||+..++++...++ .|+|+++..-.+.+.+..+.+ |...+ +-+.++. .| .+.+..+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~-~f~VvaLaa~~n~~~l~~q~~~f~p~~------v~i~~~~~~~~l~~~l~~~~~ 74 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPD-RFRVVALSAGKNVELLAEQAREFRPKY------VVVADEEAAKELKEALAAAGI 74 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCcc-ccEEEEEEcCCCHHHHHHHHHHhCCCE------EEEcCHHHHHHHHHhhccCCc
Confidence 4899999 99999999999987763 699999974234443333322 22211 1100000 00 0011112
Q ss_pred EEEecCC-CCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEE
Q 015637 142 QVVSNRN-PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (403)
Q Consensus 142 ~v~~~~d-p~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVII 188 (403)
+++...+ ..++- ...++|+|+.+++.+...+..-..+++| |+|.+
T Consensus 75 ~v~~G~~~~~~l~-~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aG-K~VaL 120 (385)
T PRK05447 75 EVLAGEEGLCELA-ALPEADVVVAAIVGAAGLLPTLAAIRAG-KRIAL 120 (385)
T ss_pred eEEEChhHHHHHh-cCCCCCEEEEeCcCcccHHHHHHHHHCC-CcEEE
Confidence 2332221 21211 1126899999999888887777888888 45554
No 67
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.35 E-value=0.013 Score=61.74 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=62.8
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecC---------CChhHHhhhcccccee-cccCcceeeecCCeEEE
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT---------GGVKQASHLLKYDSTL-GIFEADVKPVGTDGISV 136 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~---------~~~~~~a~ll~yDS~~-G~f~~~v~~~~~~~l~i 136 (403)
...||+|-|||.||+.+++.|.+.. ..||+|.|. .+++ .|++|-..+ |....- .+. .
T Consensus 231 ~g~rVaIqGfGnVG~~~A~~L~~~G---akVVavsDs~G~iyn~~GLD~~---~L~~~k~~~~~~l~~~----~~~---~ 297 (445)
T PRK09414 231 EGKRVVVSGSGNVAIYAIEKAQQLG---AKVVTCSDSSGYVYDEEGIDLE---KLKEIKEVRRGRISEY----AEE---F 297 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCceEECCCCCCHH---HHHHHHHhcCCchhhh----hhh---c
Confidence 3579999999999999999999875 899999883 1333 233332111 111110 000 0
Q ss_pred CCEEEEEEecCCCCCCCCCCcCccEEeeCC-CCcCCHhhHHHHHHcCCCeEEE
Q 015637 137 DGKVIQVVSNRNPVNLPWGDLGIDLVIEGT-GVFVDREGAGKHIQAGAKKVLI 188 (403)
Q Consensus 137 ~G~~I~v~~~~dp~~i~w~~~gvDiV~e~t-G~f~s~~~a~~hl~aGakkVII 188 (403)
+.+ . -+++. .|. ..+||.+.|+ +..++.+.+..+.+.+|| +|+
T Consensus 298 ~~~---~---i~~~~-i~~-~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIv 341 (445)
T PRK09414 298 GAE---Y---LEGGS-PWS-VPCDIALPCATQNELDEEDAKTLIANGVK-AVA 341 (445)
T ss_pred CCe---e---cCCcc-ccc-cCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEE
Confidence 001 1 12222 243 5799999998 778888999988877784 444
No 68
>PLN02775 Probable dihydrodipicolinate reductase
Probab=96.02 E-value=0.021 Score=56.74 Aligned_cols=99 Identities=17% Similarity=0.131 Sum_probs=61.7
Q ss_pred cCceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEE
Q 015637 66 QAKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (403)
Q Consensus 66 ~m~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~ 144 (403)
.+.+||+||| .|++||.+++++.. + +|++|+.-|... + .++-.+.+.|..++++
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~-~--~~~Lv~~~~~~~-~---------------------~~~~~~~~~g~~v~~~ 63 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVS-A--GLQLVPVSFTGP-A---------------------GVGVTVEVCGVEVRLV 63 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhc-C--CCEEEEEecccc-c---------------------cccccceeccceeeee
Confidence 4568999999 99999999999988 5 399988665210 0 0011123444456664
Q ss_pred ecCCCCCCC--CCCcCcc-EEeeCCCCcCCHhhHHHHHHcCCCeEEEc
Q 015637 145 SNRNPVNLP--WGDLGID-LVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (403)
Q Consensus 145 ~~~dp~~i~--w~~~gvD-iV~e~tG~f~s~~~a~~hl~aGakkVIIs 189 (403)
...|.+..- -+....| ++||=|-.....+.++..++.|..-||=|
T Consensus 64 ~~~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGT 111 (286)
T PLN02775 64 GPSEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGT 111 (286)
T ss_pred cCccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHHHHCCCCEEEEC
Confidence 222332210 0111468 88998877667777888888887554433
No 69
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.99 E-value=0.033 Score=53.06 Aligned_cols=72 Identities=24% Similarity=0.320 Sum_probs=50.7
Q ss_pred CccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCCCCCCeEEeecCcc-CCCC-CCCeEecCCchhhhHHHHHHHHHh
Q 015637 158 GIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAD-AYKP-DEPIISNASCTTNCLAPFVKVLDQ 234 (403)
Q Consensus 158 gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~~dvp~vV~gVN~~-~~~~-~~~IISnaSCTTn~Lap~lk~L~~ 234 (403)
++|+|||+|......+.+.+..++|.+ .|+-....--|-+||-||.+ +++. .-+.|. |-..+-.|++....+
T Consensus 71 di~lvfdatsa~~h~~~a~~~ae~gi~--~idltpaaigp~vvp~~n~~eh~~a~nvnmvt---cggqatipiv~avsr 144 (310)
T COG4569 71 DIDLVFDATSAGAHVKNAAALAEAGIR--LIDLTPAAIGPYVVPVVNLEEHVDALNVNMVT---CGGQATIPIVAAVSR 144 (310)
T ss_pred CcceEEeccccchhhcchHhHHhcCCc--eeecchhccCCeeccccchHHhcCCCCcceEe---ecCcccchhhhhhhh
Confidence 689999999999988889999999984 45443322359999999987 4553 345664 555555566555443
No 70
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.87 E-value=0.004 Score=52.84 Aligned_cols=87 Identities=28% Similarity=0.393 Sum_probs=48.5
Q ss_pred ccChhHHHHHHHHHcCCCC-CceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCCCCC-C
Q 015637 75 GFGRIGRNFLRCWHGRKDS-PLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVN-L 152 (403)
Q Consensus 75 GfGrIGr~vlr~l~~~~~~-~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~dp~~-i 152 (403)
|||.||+.+++.|.++... +++|++|-+.. . ++..+. .. . ..+..+ . .+.++ +
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~-----~~~~~~-----~~--~-~~~~~~-~----------~~~~~~~ 55 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-M-----LISKDW-----AA--S-FPDEAF-T----------TDLEELI 55 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-E-----EEETTH-----HH--H-HTHSCE-E----------SSHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-c-----hhhhhh-----hh--h-cccccc-c----------CCHHHHh
Confidence 8999999999999876411 48999998741 0 010000 00 0 000000 0 12211 1
Q ss_pred CCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcC
Q 015637 153 PWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (403)
Q Consensus 153 ~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsa 190 (403)
.| ..+|+|||||+.....++.+..+++|. -||++
T Consensus 56 ~~--~~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~ 89 (117)
T PF03447_consen 56 DD--PDIDVVVECTSSEAVAEYYEKALERGK--HVVTA 89 (117)
T ss_dssp TH--TT-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES
T ss_pred cC--cCCCEEEECCCchHHHHHHHHHHHCCC--eEEEE
Confidence 11 158999999998877788888898887 55554
No 71
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=95.77 E-value=0.07 Score=56.21 Aligned_cols=111 Identities=17% Similarity=0.238 Sum_probs=63.7
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhcc-ccceecccCcceeeecC-------CeEEECCE
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGIFEADVKPVGT-------DGISVDGK 139 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~-yDS~~G~f~~~v~~~~~-------~~l~i~G~ 139 (403)
.||+|.| ||-||+..|+++..+++ .|+|+++..-.+.+.++...+ |...+ +-+.+. ..| .|.
T Consensus 58 KkI~ILGSTGSIGtqtLdVI~~~pd-~f~vvaLaag~Ni~lL~~q~~~f~p~~------v~v~d~~~~~~l~~~l--~~~ 128 (454)
T PLN02696 58 KPISLLGSTGSIGTQTLDIVAENPD-KFKVVALAAGSNVTLLADQVRKFKPKL------VAVRNESLVDELKEAL--ADL 128 (454)
T ss_pred cEEEEecCCcHhhHHHHHHHHhCcc-ccEEEEEECCCCHHHHHHHHHHhCCCE------EEEcCHHHHHHHHHhh--cCC
Confidence 5999999 89999999999998763 699999987445544433221 21111 100000 001 110
Q ss_pred --EEEEEe-cCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcC
Q 015637 140 --VIQVVS-NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (403)
Q Consensus 140 --~I~v~~-~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsa 190 (403)
.++++. +.+..++- ....+|+|+.+.+.+.....--..+++| |+|.+.|
T Consensus 129 ~~~~~vl~G~egl~~la-~~~evDiVV~AIvG~aGL~pTl~AIkaG-K~VALAN 180 (454)
T PLN02696 129 DDKPEIIPGEEGIVEVA-RHPEAVTVVTGIVGCAGLKPTVAAIEAG-KDIALAN 180 (454)
T ss_pred CCCcEEEECHHHHHHHH-cCCCCCEEEEeCccccchHHHHHHHHCC-CcEEEec
Confidence 122322 11111111 1126899999998887766666778888 5555543
No 72
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.75 E-value=0.11 Score=49.85 Aligned_cols=35 Identities=40% Similarity=0.624 Sum_probs=31.2
Q ss_pred cCceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecC
Q 015637 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (403)
Q Consensus 66 ~m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~ 103 (403)
.+.+||+|.|||.||+.+++.|.+.. ..||+|.|.
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g---~~vv~v~D~ 63 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAG---AKVVAVSDS 63 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECC
Confidence 35689999999999999999998875 899999985
No 73
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.38 E-value=0.16 Score=48.47 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=30.6
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecC
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~ 103 (403)
+..||+|-|||.||+.+++.|.+.. ..+|+|.|.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G---~~vV~vsD~ 55 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEG---GKVLAVSDP 55 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC---CEEEEEEcC
Confidence 4579999999999999999999875 789999995
No 74
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=94.73 E-value=0.15 Score=49.96 Aligned_cols=104 Identities=16% Similarity=0.127 Sum_probs=62.9
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecC---------CChhHHhhhccccceecc-cCcceeeecCCeEEE
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT---------GGVKQASHLLKYDSTLGI-FEADVKPVGTDGISV 136 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~---------~~~~~~a~ll~yDS~~G~-f~~~v~~~~~~~l~i 136 (403)
...||+|-|||.||+.+++.|.+.. ..||+|.|. .+++.+..+++++..++. ..... ..+
T Consensus 37 ~g~~vaIqGfGnVG~~~a~~L~e~G---akvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~-------~~~ 106 (254)
T cd05313 37 KGKRVAISGSGNVAQYAAEKLLELG---AKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYA-------KKY 106 (254)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHh-------hcC
Confidence 3469999999999999999999875 899999983 233344334443332211 00000 001
Q ss_pred CCEEEEEEecCCCCCCCCCCcCccEEeeCC-CCcCCHhhHHHHHHcCCCeEEE
Q 015637 137 DGKVIQVVSNRNPVNLPWGDLGIDLVIEGT-GVFVDREGAGKHIQAGAKKVLI 188 (403)
Q Consensus 137 ~G~~I~v~~~~dp~~i~w~~~gvDiV~e~t-G~f~s~~~a~~hl~aGakkVII 188 (403)
.| -+. -+++++ |. ..+||.+=|+ +.-++.+.++.-.+.+|| +|+
T Consensus 107 ~~--a~~---~~~~~~-~~-~~~DIliPcAl~~~I~~~na~~i~~~~ak-~I~ 151 (254)
T cd05313 107 GT--AKY---FEGKKP-WE-VPCDIAFPCATQNEVDAEDAKLLVKNGCK-YVA 151 (254)
T ss_pred CC--CEE---eCCcch-hc-CCCcEEEeccccccCCHHHHHHHHHcCCE-EEE
Confidence 11 011 123332 53 5799988776 888888888876666774 445
No 75
>PRK10206 putative oxidoreductase; Provisional
Probab=94.69 E-value=0.096 Score=53.00 Aligned_cols=95 Identities=25% Similarity=0.300 Sum_probs=59.3
Q ss_pred ceeEEEEccChhHHH-HHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEec
Q 015637 68 KLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (403)
Q Consensus 68 ~ikVaInGfGrIGr~-vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~ 146 (403)
++||||+|+|.+++. .++.+.... +.++|++|.|. +.+.....-+|. + +.++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~-~~~~l~av~d~-~~~~~~~~~~~~---------------------~--~~~~-- 53 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRK-DSWHVAHIFRR-HAKPEEQAPIYS---------------------H--IHFT-- 53 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCC-CCEEEEEEEcC-ChhHHHHHHhcC---------------------C--Cccc--
Confidence 379999999998854 467664432 24999999985 222111111111 0 0111
Q ss_pred CCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCC
Q 015637 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (403)
Q Consensus 147 ~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsap 191 (403)
.|.+++ ..+.++|+|+-||....-.+.+...+++| |.|++--|
T Consensus 54 ~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~EKP 96 (344)
T PRK10206 54 SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKP 96 (344)
T ss_pred CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEEecC
Confidence 122222 12237899999999999999999999998 56777555
No 76
>PLN02700 homoserine dehydrogenase family protein
Probab=94.69 E-value=0.058 Score=55.69 Aligned_cols=37 Identities=30% Similarity=0.515 Sum_probs=29.3
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCC------CCceEEEEecC
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKD------SPLEVVAINDT 103 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~------~~~evvaInd~ 103 (403)
|+++|+|.|+|.||+.+++.+..+.. =++.|++|.++
T Consensus 2 ~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s 44 (377)
T PLN02700 2 KKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS 44 (377)
T ss_pred cEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence 46899999999999999999875421 13778889773
No 77
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.68 E-value=0.076 Score=51.72 Aligned_cols=108 Identities=18% Similarity=0.109 Sum_probs=59.8
Q ss_pred CceeEEEEccChhHHHHHHHHHcCC------C--CCceEEEEec-CCChhHHhhhccccceecccCcceeeecCCeEEEC
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRK------D--SPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVD 137 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~------~--~~~evvaInd-~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~ 137 (403)
++.||.|+|.|-+|-.+++.|.... . ..++|+.+.. ..+...+-.-+-+++..|+.+..+- . ..--.++
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~-~-~ri~~~~ 87 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVL-V-NRLNQAM 87 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHH-H-HHHHhcc
Confidence 4679999999999999999997531 0 0135554542 3333333332333455677765442 1 1111122
Q ss_pred CEEEEEEecC-CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHH
Q 015637 138 GKVIQVVSNR-NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHI 179 (403)
Q Consensus 138 G~~I~v~~~~-dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl 179 (403)
+..+....++ +++.+ + .+.|+||+|+..+.++...-..+
T Consensus 88 ~~~i~a~~~~~~~~~~-~--~~~DiVi~avDn~~aR~~l~~~~ 127 (244)
T TIGR03736 88 GTDWTAHPERVERSST-L--HRPDIVIGCVDNRAARLAILRAF 127 (244)
T ss_pred CceEEEEEeeeCchhh-h--cCCCEEEECCCCHHHHHHHHHHH
Confidence 3333333221 22222 2 26899999999988876654433
No 78
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.22 E-value=0.24 Score=48.97 Aligned_cols=97 Identities=28% Similarity=0.315 Sum_probs=61.5
Q ss_pred CceeEEEEccChhHH-HHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEe
Q 015637 67 AKLKVAINGFGRIGR-NFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (403)
Q Consensus 67 m~ikVaInGfGrIGr-~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~ 145 (403)
|++||||+|+|.+++ ..+..+.+.++. +++++|-|. +++.+..+. ..||- . ..+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~-~~~vav~d~-~~~~a~~~a---~~~~~---~----------------~~~- 56 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGG-LELVAVVDR-DPERAEAFA---EEFGI---A----------------KAY- 56 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCc-eEEEEEecC-CHHHHHHHH---HHcCC---C----------------ccc-
Confidence 579999999997764 588888776421 799999874 443322221 11110 0 011
Q ss_pred cCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCC
Q 015637 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (403)
Q Consensus 146 ~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsap 191 (403)
.+.+++- .+.++|+|+=||....-.+.+.+.|++|. .|++--|
T Consensus 57 -~~~~~ll-~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~EKP 99 (342)
T COG0673 57 -TDLEELL-ADPDIDAVYIATPNALHAELALAALEAGK-HVLCEKP 99 (342)
T ss_pred -CCHHHHh-cCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEEcCC
Confidence 1121111 11258999999999999999999999886 5666555
No 79
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.14 E-value=0.07 Score=48.87 Aligned_cols=33 Identities=30% Similarity=0.510 Sum_probs=28.0
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~ 103 (403)
..+|||+|+|+|||.+.+.+.... ++|.+.+..
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG---~~V~~~d~~ 68 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFG---MRVIGYDRS 68 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT----EEEEEESS
T ss_pred CCEEEEEEEcCCcCeEeeeeecCC---ceeEEeccc
Confidence 458999999999999999999875 899888764
No 80
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=93.92 E-value=0.082 Score=49.54 Aligned_cols=96 Identities=18% Similarity=0.183 Sum_probs=55.4
Q ss_pred EEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCCC
Q 015637 71 VAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNP 149 (403)
Q Consensus 71 VaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~dp 149 (403)
|+|.| +|.+|+.+++.|.... ++|.++....+ +..+.-|+ ..|-.+. . . ...|+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~---~~V~~l~R~~~-~~~~~~l~--------------~~g~~vv-~-----~-d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG---FSVRALVRDPS-SDRAQQLQ--------------ALGAEVV-E-----A-DYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---GCEEEEESSSH-HHHHHHHH--------------HTTTEEE-E-----S--TT-H
T ss_pred CEEECCccHHHHHHHHHHHhCC---CCcEEEEeccc-hhhhhhhh--------------cccceEe-e-----c-ccCCH
Confidence 78999 9999999999999853 89888765321 11111121 0111111 0 0 11233
Q ss_pred CCCCCCCcCccEEeeCCCCcCCH------hhHHHHHHcCCCeEEEcCC
Q 015637 150 VNLPWGDLGIDLVIEGTGVFVDR------EGAGKHIQAGAKKVLITAP 191 (403)
Q Consensus 150 ~~i~w~~~gvDiV~e~tG~f~s~------~~a~~hl~aGakkVIIsap 191 (403)
+.+.=.-.|+|.||.+++..... ..+....++|.|++|.|..
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSF 103 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEe
Confidence 33321223899999999965321 2345566789999887644
No 81
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=93.80 E-value=0.14 Score=50.72 Aligned_cols=91 Identities=19% Similarity=0.190 Sum_probs=55.2
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
+||.||| +|++||.+++++.. + +|++|+.. + +... ...+...+.|..+++....
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~--~~~Lv~~~-~-~~~~--------------------~~~~~~~~~g~~v~v~~~~ 55 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-A--GLEIVPTS-F-GGEE--------------------EAENEAEVAGKEILLHGPS 55 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-C--CCEEEeeE-c-cccc--------------------cccchhhhcccceeeeccc
Confidence 5899999 99999999999887 4 39998752 1 1100 0111122334345553211
Q ss_pred ----CCCCCCCCCcCcc-EEeeCCCCcCCHhhHHHHHHcCCCeE
Q 015637 148 ----NPVNLPWGDLGID-LVIEGTGVFVDREGAGKHIQAGAKKV 186 (403)
Q Consensus 148 ----dp~~i~w~~~gvD-iV~e~tG~f~s~~~a~~hl~aGakkV 186 (403)
+++.+. +...| ++||=|-.....+.++..++.|..-|
T Consensus 56 ~~~~~l~~~~--~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~~V 97 (275)
T TIGR02130 56 EREARIGEVF--AKYPELICIDYTHPSAVNDNAAFYGKHGIPFV 97 (275)
T ss_pred cccccHHHHH--hhcCCEEEEECCChHHHHHHHHHHHHCCCCEE
Confidence 222221 11267 99998877777777888888887443
No 82
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.46 E-value=0.17 Score=49.92 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=26.8
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|||.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g---~~V~~l~R 32 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG---YQVRCLVR 32 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CeEEEEEc
Confidence 4899999 9999999999999875 78887764
No 83
>PLN00016 RNA-binding protein; Provisional
Probab=93.41 E-value=0.21 Score=50.75 Aligned_cols=40 Identities=28% Similarity=0.155 Sum_probs=32.0
Q ss_pred cccccccCceeEEEE----c-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 60 YRKVAAQAKLKVAIN----G-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 60 ~~~~~~~m~ikVaIn----G-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.......|+.||.|. | +|.||+.+++.|.+++ .+|.++..
T Consensus 44 ~~~~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G---~~V~~l~R 88 (378)
T PLN00016 44 AAAAAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAG---HEVTLFTR 88 (378)
T ss_pred hhhhcccccceEEEEeccCCCceeEhHHHHHHHHHCC---CEEEEEec
Confidence 344455667899999 8 9999999999999875 68877765
No 84
>PLN02477 glutamate dehydrogenase
Probab=93.39 E-value=0.65 Score=48.58 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=30.0
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~ 103 (403)
..||+|-|||.||+.+++.|.+.. ..||+|.|.
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~G---akVVaVsD~ 238 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEKG---GKIVAVSDI 238 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC---CEEEEEECC
Confidence 468999999999999999999875 899999985
No 85
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=93.16 E-value=0.24 Score=46.66 Aligned_cols=96 Identities=23% Similarity=0.247 Sum_probs=58.4
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
+.||+|.|+|.+|+.+++.+... ...++++++-|. +++.. +.. ++|.+ +....
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~-~~g~~ivgv~D~-d~~~~---------------------~~~--i~g~~--v~~~~ 136 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFE-KRGFKIVAAFDV-DPEKI---------------------GTK--IGGIP--VYHID 136 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcc-cCCcEEEEEEEC-Chhhc---------------------CCE--eCCeE--EcCHH
Confidence 46899999999999999864322 234899888663 22110 010 12322 21112
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCC
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsap 191 (403)
+..++ ..+.++|+|+.|++.....+.....+++|.+.++.-.|
T Consensus 137 ~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 137 ELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred HHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 22222 12347999999998776666677777888876665445
No 86
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=93.16 E-value=0.43 Score=50.47 Aligned_cols=101 Identities=16% Similarity=0.231 Sum_probs=63.0
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCC---------ChhHHhhhcccccee-cccCcceeeecCCeEEEC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG---------GVKQASHLLKYDSTL-GIFEADVKPVGTDGISVD 137 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~---------~~~~~a~ll~yDS~~-G~f~~~v~~~~~~~l~i~ 137 (403)
..+|+|-|||.||+..++.|.+.. ..||+|.|+- +++.+.++++|-..+ |+...- .+. ..
T Consensus 237 Gk~VaVqG~GnVg~~aa~~L~e~G---akVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~----~~~---~~ 306 (454)
T PTZ00079 237 GKTVVVSGSGNVAQYAVEKLLQLG---AKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEY----AKH---SS 306 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhh----hhc---cC
Confidence 469999999999999999999875 7999999952 244443444322111 211110 000 00
Q ss_pred CEEEEEEecCCCCCCCCCCcCccEEeeCC-CCcCCHhhHHHHHHcCCCe
Q 015637 138 GKVIQVVSNRNPVNLPWGDLGIDLVIEGT-GVFVDREGAGKHIQAGAKK 185 (403)
Q Consensus 138 G~~I~v~~~~dp~~i~w~~~gvDiV~e~t-G~f~s~~~a~~hl~aGakk 185 (403)
| -+.+ ++++ .|. ..+||.+=|+ +..++.+.|+.-++.|||-
T Consensus 307 ~--a~~~---~~~~-~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~ 348 (454)
T PTZ00079 307 T--AKYV---PGKK-PWE-VPCDIAFPCATQNEINLEDAKLLIKNGCKL 348 (454)
T ss_pred C--cEEe---CCcC-ccc-CCccEEEeccccccCCHHHHHHHHHcCCeE
Confidence 1 0111 1222 365 5799998775 8888989888777888853
No 87
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=93.08 E-value=0.066 Score=47.91 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=26.1
Q ss_pred EEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 71 VAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 71 VaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~R 30 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---HEVTALVR 30 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEES
T ss_pred eEEECCCChHHHHHHHHHHHCC---CEEEEEec
Confidence 68999 9999999999999986 89988875
No 88
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=93.04 E-value=0.065 Score=60.53 Aligned_cols=37 Identities=24% Similarity=0.400 Sum_probs=29.6
Q ss_pred cCceeEEEEccChhHHHHHHHHHcCC------CCCceEEEEec
Q 015637 66 QAKLKVAINGFGRIGRNFLRCWHGRK------DSPLEVVAIND 102 (403)
Q Consensus 66 ~m~ikVaInGfGrIGr~vlr~l~~~~------~~~~evvaInd 102 (403)
.++++|+|.|||.||+.++++|.++. .-++.|++|.+
T Consensus 463 ~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~ 505 (819)
T PRK09436 463 DQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIAN 505 (819)
T ss_pred cccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEc
Confidence 36799999999999999999997542 11478888875
No 89
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.91 E-value=0.22 Score=47.63 Aligned_cols=98 Identities=23% Similarity=0.227 Sum_probs=55.6
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhcc--ccceecccCcceeeecCCeEEECCEEEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK--YDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~--yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~ 146 (403)
|++.|+|.|++|+.+++.|.++. .+|+.|.+ +.+.....++ +|. ..+..++....++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g---~~Vv~Id~--d~~~~~~~~~~~~~~--------------~~v~gd~t~~~~L-- 59 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG---HNVVLIDR--DEERVEEFLADELDT--------------HVVIGDATDEDVL-- 59 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC---CceEEEEc--CHHHHHHHhhhhcce--------------EEEEecCCCHHHH--
Confidence 58999999999999999999875 68888875 3433322121 111 1111112111121
Q ss_pred CCCCCCCCCCcCccEEeeCCCCcCCH-hhHHHHHH-cCCCeEEEcCCC
Q 015637 147 RNPVNLPWGDLGIDLVIEGTGVFVDR-EGAGKHIQ-AGAKKVLITAPG 192 (403)
Q Consensus 147 ~dp~~i~w~~~gvDiV~e~tG~f~s~-~~a~~hl~-aGakkVIIsaps 192 (403)
.+.. -..+|+++-+||.-... -.+..+++ -|.+++|.-+.+
T Consensus 60 ---~~ag--i~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~ 102 (225)
T COG0569 60 ---EEAG--IDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARN 102 (225)
T ss_pred ---HhcC--CCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 1111 12579999999974432 22334444 577776665544
No 90
>PRK14030 glutamate dehydrogenase; Provisional
Probab=92.78 E-value=0.5 Score=49.89 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=63.7
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecC---------CChhHHhhhccccceecccCcceeeecCCeEEECC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT---------GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG 138 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~---------~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G 138 (403)
..||+|-|||.||+..++.|.+.. ..||+|+|. .+++.+.+|++|-..+|..-.... + .+.|
T Consensus 228 g~~vaIQGfGnVG~~aA~~L~e~G---akvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~----~--~~~g 298 (445)
T PRK14030 228 GKTVAISGFGNVAWGAATKATELG---AKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYA----E--KFPG 298 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHH----h--cCCC
Confidence 469999999999999999998875 799998773 233444456654332222100000 0 1212
Q ss_pred EEEEEEecCCCCCCCCCCcCccEEeeCC-CCcCCHhhHHHHHHcCCCe
Q 015637 139 KVIQVVSNRNPVNLPWGDLGIDLVIEGT-GVFVDREGAGKHIQAGAKK 185 (403)
Q Consensus 139 ~~I~v~~~~dp~~i~w~~~gvDiV~e~t-G~f~s~~~a~~hl~aGakk 185 (403)
- +.+ ++++ .|. ..+||.+=|+ +..++.+.++.-.+.+||-
T Consensus 299 a--~~i---~~~~-~~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak~ 339 (445)
T PRK14030 299 S--TFF---AGKK-PWE-QKVDIALPCATQNELNGEDADKLIKNGVLC 339 (445)
T ss_pred C--EEc---CCcc-cee-ccccEEeeccccccCCHHHHHHHHHcCCeE
Confidence 1 111 2222 253 5799988776 8889999888877778843
No 91
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.71 E-value=1.2 Score=43.98 Aligned_cols=148 Identities=14% Similarity=0.145 Sum_probs=75.5
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccc-----c--ceecccCcceeeecCCeEEECCEEEE
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKY-----D--STLGIFEADVKPVGTDGISVDGKVIQ 142 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~y-----D--S~~G~f~~~v~~~~~~~l~i~G~~I~ 142 (403)
||||+|.|.+|+.+...+.... ++|+..+- +++.+....++ | -..|....... +..+ ..|+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~---~~~~----~~l~ 74 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAG---VDVLVFET--TEELATAGRNRIEKSLERAVSRGKLTERER---DAAL----ARLR 74 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCC---CEEEEEEC--CHHHHHHHHHHHHHHHHHHHhcccCChhhH---HHHH----hCeE
Confidence 8999999999999999888764 78766653 33333221110 0 00122111000 0000 1233
Q ss_pred EEecCCCCCCCCCCcCccEEeeCCCCcCCHhh-----HHHHH-HcCCCeEEEcCCCC-------C--CCC---eEEeecC
Q 015637 143 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREG-----AGKHI-QAGAKKVLITAPGK-------G--DIP---TYVVGVN 204 (403)
Q Consensus 143 v~~~~dp~~i~w~~~gvDiV~e~tG~f~s~~~-----a~~hl-~aGakkVIIsaps~-------~--dvp---~vV~gVN 204 (403)
+. .+++.+ .++|+||||...-...+. .+.+. ..++ ++.|+.|. . ..| +-+--.|
T Consensus 75 ~~--~~~~~~----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la~~~~~~~r~~g~hf~~ 146 (286)
T PRK07819 75 FT--TDLGDF----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLAAATKRPGRVLGLHFFN 146 (286)
T ss_pred ee--CCHHHh----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCCccEEEEecCC
Confidence 32 344333 389999999865544322 12333 3344 88887763 0 122 1223344
Q ss_pred ccCCCCCCCeEecCCchhhhHHHHHHHHHhhcC
Q 015637 205 ADAYKPDEPIISNASCTTNCLAPFVKVLDQKFG 237 (403)
Q Consensus 205 ~~~~~~~~~IISnaSCTTn~Lap~lk~L~~~fG 237 (403)
+-.+.+.-.||..+.++...+..+...+.+..|
T Consensus 147 P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lg 179 (286)
T PRK07819 147 PVPVLPLVELVPTLVTSEATVARAEEFASDVLG 179 (286)
T ss_pred CcccCceEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 333332235666667766666655555454455
No 92
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=92.60 E-value=0.46 Score=44.80 Aligned_cols=31 Identities=39% Similarity=0.457 Sum_probs=27.9
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|||||.| .|++|..+++-+..|. -||+||-.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG---HeVTAivR 32 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG---HEVTAIVR 32 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC---CeeEEEEe
Confidence 5899999 9999999999999886 79999865
No 93
>PRK14031 glutamate dehydrogenase; Provisional
Probab=92.50 E-value=0.49 Score=49.97 Aligned_cols=103 Identities=14% Similarity=0.212 Sum_probs=61.1
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecC---------CChhHHhhhccccce-ecccCcceeeecCCeEEEC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT---------GGVKQASHLLKYDST-LGIFEADVKPVGTDGISVD 137 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~---------~~~~~~a~ll~yDS~-~G~f~~~v~~~~~~~l~i~ 137 (403)
..||+|-|||.||...++.|.+.. -.||+|.|. .+++.+.|+.+|... +++ +.-..+. .
T Consensus 228 g~rVaVQGfGNVG~~aA~~L~e~G---AkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~----v~~~~~~---~- 296 (444)
T PRK14031 228 GKVCLVSGSGNVAQYTAEKVLELG---GKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGR----IREYAEK---Y- 296 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCc----hhhhHhh---c-
Confidence 469999999999999999999875 799999982 134333333222211 111 1100000 0
Q ss_pred CEEEEEEecCCCCCCCCCCcCccEEeeCC-CCcCCHhhHHHHHHcCCCeEEEc
Q 015637 138 GKVIQVVSNRNPVNLPWGDLGIDLVIEGT-GVFVDREGAGKHIQAGAKKVLIT 189 (403)
Q Consensus 138 G~~I~v~~~~dp~~i~w~~~gvDiV~e~t-G~f~s~~~a~~hl~aGakkVIIs 189 (403)
| .... ++++ .|. ..+||.+=|+ +..++.+.+++-...|+ ++|+.
T Consensus 297 g--a~~i---~~d~-~~~-~~cDIliPaAl~n~I~~~na~~l~a~g~-~~V~E 341 (444)
T PRK14031 297 G--CKYV---EGAR-PWG-EKGDIALPSATQNELNGDDARQLVANGV-IAVSE 341 (444)
T ss_pred C--CEEc---CCcc-ccc-CCCcEEeecccccccCHHHHHHHHhcCC-eEEEC
Confidence 1 1111 1222 354 4789998776 77888888887666677 33443
No 94
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=92.40 E-value=0.082 Score=59.68 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=29.8
Q ss_pred cCceeEEEEccChhHHHHHHHHHcCC-------CCCceEEEEec
Q 015637 66 QAKLKVAINGFGRIGRNFLRCWHGRK-------DSPLEVVAIND 102 (403)
Q Consensus 66 ~m~ikVaInGfGrIGr~vlr~l~~~~-------~~~~evvaInd 102 (403)
.+.++|+|.|||.||+.++++|.++. .-++.|++|.+
T Consensus 456 ~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~ 499 (810)
T PRK09466 456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVD 499 (810)
T ss_pred CceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence 35799999999999999999997642 11478888876
No 95
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=92.08 E-value=0.34 Score=42.87 Aligned_cols=40 Identities=30% Similarity=0.465 Sum_probs=32.4
Q ss_pred EEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhh
Q 015637 71 VAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASH 111 (403)
Q Consensus 71 VaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ 111 (403)
|+|.| ||-||++.|+.+.++++ .|+|+++..-.+.+.+..
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d-~f~v~~Lsa~~n~~~L~~ 41 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPD-KFEVVALSAGSNIEKLAE 41 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTT-TEEEEEEEESSTHHHHHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCCC-ceEEEEEEcCCCHHHHHH
Confidence 68999 99999999999999874 699999987445554433
No 96
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.91 E-value=0.83 Score=45.56 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=27.0
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|++||+|+|.|.||..+...|.... .+|..++.
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G---~~V~~~~r 33 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAG---ADVTLIGR 33 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcC---CcEEEEec
Confidence 6689999999999999999998764 56655553
No 97
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=91.42 E-value=0.22 Score=49.89 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=26.1
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
..+|||+|||+|||.+++.+.... ++|.+.+
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~fg---m~V~~~d 175 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAFG---AKVVYYS 175 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhcC---CEEEEEC
Confidence 458999999999999999997664 7877665
No 98
>PRK06487 glycerate dehydrogenase; Provisional
Probab=90.99 E-value=0.26 Score=49.53 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=26.2
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
..+|||+|+|+|||.+++.+.... ++|.+.+
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~fg---m~V~~~~ 178 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAFG---MRVLIGQ 178 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCC---CEEEEEC
Confidence 358999999999999999998764 7877665
No 99
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=90.86 E-value=0.62 Score=44.92 Aligned_cols=30 Identities=10% Similarity=0.286 Sum_probs=25.2
Q ss_pred eEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 70 kVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
+|.|.| +|.||+.+++.|.++. .+|.++..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g---~~V~~~~R 31 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS---VPFLVASR 31 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC---CcEEEEeC
Confidence 588999 9999999999998875 67777654
No 100
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=90.74 E-value=0.39 Score=48.98 Aligned_cols=95 Identities=26% Similarity=0.358 Sum_probs=53.0
Q ss_pred EEEEccChhHHHHHHHHHcCCCCCc-eEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCCC
Q 015637 71 VAINGFGRIGRNFLRCWHGRKDSPL-EVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNP 149 (403)
Q Consensus 71 VaInGfGrIGr~vlr~l~~~~~~~~-evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~dp 149 (403)
|.|.|.|.||+.+++.|.++.. + +|+.... +.+.+..+.+ . ..+..+.. +.+ ...|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~--~~~v~va~r--~~~~~~~~~~--~-----------~~~~~~~~----~~~-d~~~~ 58 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP--FEEVTVADR--NPEKAERLAE--K-----------LLGDRVEA----VQV-DVNDP 58 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC--E-EEEEEES--SHHHHHHHHT---------------TTTTEEE----EE---TTTH
T ss_pred CEEEcCcHHHHHHHHHHhcCCC--CCcEEEEEC--CHHHHHHHHh--h-----------ccccceeE----EEE-ecCCH
Confidence 6899999999999999998752 5 5543332 3444333331 0 00111111 111 22333
Q ss_pred CCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEc
Q 015637 150 VNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (403)
Q Consensus 150 ~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIs 189 (403)
+.+.=--.+.|+||.|+|.|....-++..+++|+ -.++
T Consensus 59 ~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~--~yvD 96 (386)
T PF03435_consen 59 ESLAELLRGCDVVINCAGPFFGEPVARACIEAGV--HYVD 96 (386)
T ss_dssp HHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT---EEEE
T ss_pred HHHHHHHhcCCEEEECCccchhHHHHHHHHHhCC--Ceec
Confidence 3221101267999999999988888889999999 4565
No 101
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=90.74 E-value=0.18 Score=44.30 Aligned_cols=32 Identities=34% Similarity=0.548 Sum_probs=26.7
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
++||+|+|.|++|+.+.++|.+.. ++|++|-.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag---~~v~~v~s 41 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAG---HEVVGVYS 41 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTT---SEEEEESS
T ss_pred ccEEEEECCCHHHHHHHHHHHHCC---CeEEEEEe
Confidence 579999999999999999999875 78888754
No 102
>PRK06932 glycerate dehydrogenase; Provisional
Probab=90.38 E-value=0.32 Score=48.87 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=25.7
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
..+|||+|+|+|||.+.+.+.... ++|.+.+
T Consensus 147 gktvgIiG~G~IG~~va~~l~~fg---~~V~~~~ 177 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQALG---MKVLYAE 177 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCC---CEEEEEC
Confidence 458999999999999999997664 7876654
No 103
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=90.34 E-value=0.52 Score=48.37 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=30.4
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecC
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~ 103 (403)
.++|||+.|.|-.|+-++-.....+ -|++|+|.|.
T Consensus 16 ~PiRVGlIGAG~mG~~ivtQi~~m~--Gm~vvaisd~ 50 (438)
T COG4091 16 KPIRVGLIGAGEMGTGIVTQIASMP--GMEVVAISDR 50 (438)
T ss_pred CceEEEEecccccchHHHHHHhhcC--CceEEEEecc
Confidence 5699999999999999988887665 3999999994
No 104
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=90.17 E-value=0.6 Score=44.04 Aligned_cols=96 Identities=23% Similarity=0.301 Sum_probs=62.9
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~d 148 (403)
.+|.|+|.|.+||.++.--+... ..|.++++=|. +++. -|+.-++ ++|..-.+
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~-~~~~iv~~FDv-~~~~----------VG~~~~~---------------v~V~~~d~ 137 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKK-NGMKIVAAFDV-DPDK----------VGTKIGD---------------VPVYDLDD 137 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhh-cCceEEEEecC-CHHH----------hCcccCC---------------eeeechHH
Confidence 79999999999999877555432 25999888774 3321 1332222 33322222
Q ss_pred CCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCC
Q 015637 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (403)
Q Consensus 149 p~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps 192 (403)
.+.+ -++.++|+++-|.+.-...+-|..-.++|.|.++=-+|-
T Consensus 138 le~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtPv 180 (211)
T COG2344 138 LEKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTPV 180 (211)
T ss_pred HHHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccce
Confidence 3222 123489999999998877777888889999886655553
No 105
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=89.81 E-value=0.54 Score=46.65 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=26.2
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-+|+|.|+|+||+.+++.|.... .+|...+.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G---~~V~v~~R 182 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG---ARVFVGAR 182 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC---CEEEEEeC
Confidence 48999999999999999998875 67766664
No 106
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.58 E-value=1.6 Score=40.91 Aligned_cols=30 Identities=20% Similarity=0.472 Sum_probs=25.8
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.+|+|.|+|++|+.+.+.|.+.. .+|+ +.|
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G---~~Vv-v~D 58 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEG---AKLI-VAD 58 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEE-EEc
Confidence 58999999999999999998875 7887 444
No 107
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=89.57 E-value=0.41 Score=48.49 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=27.0
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
..+|||+|||+|||.+.+.|.... |+|.+.+-
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afg---m~v~~~d~ 173 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFG---MKVIGYDP 173 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CeEEEECC
Confidence 458999999999999999998775 88876654
No 108
>PRK08507 prephenate dehydrogenase; Validated
Probab=89.36 E-value=1.1 Score=43.58 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=24.5
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
|||+|+|+|.+|..+.+.|.+... ..+|.+++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~-~~~v~~~d 32 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGL-ISKVYGYD 32 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCC-CCEEEEEc
Confidence 389999999999999999986531 24665554
No 109
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=89.36 E-value=0.43 Score=48.35 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=26.0
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-.++||.|+||||+.++|.+.... ++|.+-+-
T Consensus 146 gktvGIiG~GrIG~avA~r~~~Fg---m~v~y~~~ 177 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGFG---MKVLYYDR 177 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCC---CEEEEECC
Confidence 458999999999999999998654 78765543
No 110
>PLN02928 oxidoreductase family protein
Probab=89.32 E-value=0.43 Score=48.65 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=27.4
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
..+|||+|+|+|||.+++.|.... ++|++.+.
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG---~~V~~~dr 190 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFG---VKLLATRR 190 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCC---CEEEEECC
Confidence 458999999999999999998765 89887764
No 111
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=89.13 E-value=1.6 Score=37.46 Aligned_cols=83 Identities=22% Similarity=0.221 Sum_probs=53.7
Q ss_pred eEEEEc----cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEe
Q 015637 70 KVAING----FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (403)
Q Consensus 70 kVaInG----fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~ 145 (403)
+|||+| -+..|+.+++.|.++. ++|..||-- ++. +.|.+ ++
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G---~~v~~Vnp~-----------~~~------------------i~G~~--~y- 46 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAG---YEVYPVNPK-----------GGE------------------ILGIK--CY- 46 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT----EEEEESTT-----------CSE------------------ETTEE---B-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCC---CEEEEECCC-----------ceE------------------ECcEE--ee-
Confidence 689999 5999999999999864 799888842 122 22221 22
Q ss_pred cCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCC
Q 015637 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (403)
Q Consensus 146 ~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsap 191 (403)
.+.+++| ..+|+++-++......+..+...+.|++.+++...
T Consensus 47 -~sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 47 -PSLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp -SSGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred -ccccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2222222 36899999998887778888888889999888654
No 112
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.10 E-value=1.1 Score=45.81 Aligned_cols=101 Identities=27% Similarity=0.348 Sum_probs=62.4
Q ss_pred cCceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEe
Q 015637 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (403)
Q Consensus 66 ~m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~ 145 (403)
.+.+|+||+|.|+|++-++++|..-++.+..||||.+. +.+...-.. --|+ ++ +.+ . +++
T Consensus 4 s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~-s~~~A~~fA---q~~~-~~-~~k-~------y~s------- 63 (351)
T KOG2741|consen 4 SATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP-SLERAKEFA---QRHN-IP-NPK-A------YGS------- 63 (351)
T ss_pred CceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc-cHHHHHHHH---HhcC-CC-CCc-c------ccC-------
Confidence 35699999999999999999999877567999999984 333221111 1111 11 111 0 111
Q ss_pred cCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCC
Q 015637 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (403)
Q Consensus 146 ~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsap 191 (403)
-+++- ++..||+|.-++..-.-.|++-..++.| |.|++--|
T Consensus 64 ---yEeLa-kd~~vDvVyi~~~~~qH~evv~l~l~~~-K~VL~EKP 104 (351)
T KOG2741|consen 64 ---YEELA-KDPEVDVVYISTPNPQHYEVVMLALNKG-KHVLCEKP 104 (351)
T ss_pred ---HHHHh-cCCCcCEEEeCCCCccHHHHHHHHHHcC-CcEEeccc
Confidence 01110 1236899998888777777777777654 33666444
No 113
>PRK07574 formate dehydrogenase; Provisional
Probab=88.95 E-value=0.47 Score=49.19 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=26.5
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
..+|||+|+|+|||.+++.|.... ++|.+.+.
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~fG---~~V~~~dr 223 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPFD---VKLHYTDR 223 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEECC
Confidence 358999999999999999998764 78776653
No 114
>PRK06436 glycerate dehydrogenase; Provisional
Probab=88.93 E-value=0.49 Score=47.39 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=26.6
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
..+|||+|+|+||+.+.+.|.... ++|++.+.
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG---~~V~~~~r 153 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFG---MNIYAYTR 153 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CEEEEECC
Confidence 458999999999999999887654 78877764
No 115
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=88.85 E-value=0.5 Score=47.73 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=24.9
Q ss_pred ceeEEEEccChhHHHHHHHHH-cCCCCCceEEEEe
Q 015637 68 KLKVAINGFGRIGRNFLRCWH-GRKDSPLEVVAIN 101 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~-~~~~~~~evvaIn 101 (403)
..+|||+|+|+|||.+.+.+. ... ++|++.+
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~fg---m~V~~~~ 176 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGFN---MPILYNA 176 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcCC---CEEEEEC
Confidence 468999999999999999986 554 7876443
No 116
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=88.74 E-value=1.4 Score=51.18 Aligned_cols=91 Identities=20% Similarity=0.173 Sum_probs=58.5
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCce------------EEEEecCCChhHHhhhccccceecccCcceeeecCCeEEE
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE------------VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISV 136 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~e------------vvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i 136 (403)
.||+|+|.|+||+..++.|.+.++ .+ +|+|.|. +++....+.+ .++
T Consensus 570 ~rIlVLGAG~VG~~~a~~La~~~~--~~~~~~~~~~~~~~lV~VaD~-~~~~a~~la~------~~~------------- 627 (1042)
T PLN02819 570 QNVLILGAGRVCRPAAEYLASVKT--ISYYGDDSEEPTDVHVIVASL-YLKDAKETVE------GIE------------- 627 (1042)
T ss_pred CcEEEECCCHHHHHHHHHHHhCcC--ccccccccccccccEEEEECC-CHHHHHHHHH------hcC-------------
Confidence 499999999999999999987653 44 6778774 3333322221 000
Q ss_pred CCEEEEEEecCCCCCCC-CCCcCccEEeeCCCCcCCHhhHHHHHHcCC
Q 015637 137 DGKVIQVVSNRNPVNLP-WGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (403)
Q Consensus 137 ~G~~I~v~~~~dp~~i~-w~~~gvDiV~e~tG~f~s~~~a~~hl~aGa 183 (403)
+-+.+.+ ...|++++. +- .++|+|+.|++.+...+-+...+++|.
T Consensus 628 ~~~~v~l-Dv~D~e~L~~~v-~~~DaVIsalP~~~H~~VAkaAieaGk 673 (1042)
T PLN02819 628 NAEAVQL-DVSDSESLLKYV-SQVDVVISLLPASCHAVVAKACIELKK 673 (1042)
T ss_pred CCceEEe-ecCCHHHHHHhh-cCCCEEEECCCchhhHHHHHHHHHcCC
Confidence 0011222 113333332 10 269999999999999999999999987
No 117
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=88.68 E-value=1.4 Score=45.39 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=25.7
Q ss_pred CceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 67 m~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
+..||+|+| +|.+|+.+.+.|.... ++|..++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G---~~V~~~d 129 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSG---YQVRILE 129 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCC---CeEEEeC
Confidence 447999999 9999999999998764 5655443
No 118
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=88.39 E-value=0.54 Score=49.00 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=26.3
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
..+|||+|+|+|||.+++.+.... ++|++.+
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~fG---m~V~~~d 181 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESLG---MRVYFYD 181 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEC
Confidence 358999999999999999998765 8887665
No 119
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.39 E-value=0.77 Score=45.71 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=26.4
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.-||.|.|+|++|+.+++.|.... .+|..++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~G---a~V~v~~r 183 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALG---ANVTVGAR 183 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC---CEEEEEEC
Confidence 468999999999999999998765 57666654
No 120
>PRK13243 glyoxylate reductase; Reviewed
Probab=88.27 E-value=0.56 Score=47.46 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=26.6
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
..+|||+|+|+||+.+.+.|.... ++|.+.+.
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~G---~~V~~~d~ 181 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGFG---MRILYYSR 181 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CEEEEECC
Confidence 458999999999999999998764 78776653
No 121
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.21 E-value=1.2 Score=46.64 Aligned_cols=29 Identities=17% Similarity=0.480 Sum_probs=24.1
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEE
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaI 100 (403)
-+|+|.|+|.||+.+++.+.... ..|+.+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G---a~ViV~ 231 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG---ARVIVT 231 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE
Confidence 48999999999999999998765 566554
No 122
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=88.17 E-value=0.84 Score=47.37 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=61.2
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhcc-ccceecccCcceeeecCC---eEE--EC--CE
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGIFEADVKPVGTD---GIS--VD--GK 139 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~-yDS~~G~f~~~v~~~~~~---~l~--i~--G~ 139 (403)
.||+|.| ||-||++.|+.+..+++ .|+|+++..-.+.+.+....+ |...+ +-+.+++ .+. .. |.
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~-~f~v~~Laa~~n~~~L~~q~~~f~p~~------v~i~d~~~~~~l~~~l~~~~~ 74 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPD-HFQVVALSAGKNVALMVEQILEFRPKF------VAIDDEASLKDLKTMLQQQGS 74 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCcc-ccEEEEEEcCCCHHHHHHHHHHcCCCE------EEEcCHHHHHHHHHHhhcCCC
Confidence 3899999 99999999999987763 699999976444444333322 11111 1100100 000 01 21
Q ss_pred EEEEEecCC-CCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcC
Q 015637 140 VIQVVSNRN-PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (403)
Q Consensus 140 ~I~v~~~~d-p~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsa 190 (403)
.++++...+ ..++- ....+|+|+-+.-.+....---..+++| |++-+.|
T Consensus 75 ~~~v~~G~~~l~~l~-~~~~~D~vv~AivG~aGL~pt~~Ai~~g-k~iaLAN 124 (389)
T TIGR00243 75 RTEVLVGEEGICEMA-ALEDVDQVMNAIVGAAGLLPTLAAIRAG-KTIALAN 124 (389)
T ss_pred CcEEEECHHHHHHHH-cCCCCCEEEEhhhcHhhHHHHHHHHHCC-CcEEEec
Confidence 133332221 11110 1125899999986666655555677777 4555543
No 123
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=88.11 E-value=0.65 Score=46.70 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=25.9
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
.+|||+|+|.||+.+.+.|.... ++|.+.+
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG---~~V~~~~ 166 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWG---FPLRCWS 166 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 58999999999999999998765 7876665
No 124
>PTZ00117 malate dehydrogenase; Provisional
Probab=87.98 E-value=2.1 Score=43.02 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.7
Q ss_pred ceeEEEEccChhHHHHHHHHHcCC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
+.||+|.|.|.||..+...+..++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~ 28 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKN 28 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC
Confidence 469999999999999998887654
No 125
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=87.89 E-value=1.6 Score=38.62 Aligned_cols=80 Identities=21% Similarity=0.181 Sum_probs=45.5
Q ss_pred eeEEEEcc-ChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 69 LKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 69 ikVaInGf-GrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
|||+|.|. |.||..++-.|..++- -=||+-++.. . ..+.-...|-.|..+.. +..+.+.. .
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l-~~ei~L~D~~--~-~~~~g~a~Dl~~~~~~~-------------~~~~~i~~-~ 62 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGL-ADEIVLIDIN--E-DKAEGEALDLSHASAPL-------------PSPVRITS-G 62 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTT-SSEEEEEESS--H-HHHHHHHHHHHHHHHGS-------------TEEEEEEE-S
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCceEEeccC--c-ccceeeehhhhhhhhhc-------------cccccccc-c
Confidence 58999997 9999999998887642 1245444321 1 11222222433322211 11233433 4
Q ss_pred CCCCCCCCCcCccEEeeCCCCcC
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFV 170 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~ 170 (403)
+.+.+. +.|+|+-+.|...
T Consensus 63 ~~~~~~----~aDivvitag~~~ 81 (141)
T PF00056_consen 63 DYEALK----DADIVVITAGVPR 81 (141)
T ss_dssp SGGGGT----TESEEEETTSTSS
T ss_pred cccccc----cccEEEEeccccc
Confidence 555553 8899999998754
No 126
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.69 E-value=4 Score=40.73 Aligned_cols=30 Identities=27% Similarity=0.239 Sum_probs=24.6
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
-+|.|.|.|.||...++++.... ..++++.
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G---~~vi~~~ 203 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRG---FEVYVLN 203 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEe
Confidence 37999999999999998887764 5777765
No 127
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=87.58 E-value=0.73 Score=46.67 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=26.6
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.++|||+|+|+||+.+.+.|.... ++|++.+.
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~G---~~V~~~d~ 177 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGFG---ATITAYDA 177 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEEeC
Confidence 358999999999999999998764 78876653
No 128
>PRK06223 malate dehydrogenase; Reviewed
Probab=87.42 E-value=2.9 Score=41.29 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=24.2
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
+||+|.|.|.+|..++..+..++- .+|+-++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~--~ev~L~D 33 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKEL--GDVVLFD 33 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--eEEEEEE
Confidence 699999999999999998887641 1665553
No 129
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=87.33 E-value=1.5 Score=46.15 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=24.8
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
-+|+|.|+|.||+.+++.|.... ..|+.++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~G---a~ViV~d 242 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLG---ARVIVTE 242 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEc
Confidence 48999999999999999998775 6765544
No 130
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=87.33 E-value=0.91 Score=39.64 Aligned_cols=97 Identities=21% Similarity=0.221 Sum_probs=48.7
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEec-CCChhHHhhhccc-cceecccCcceee----ecCCeEEECCEEEEE
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKY-DSTLGIFEADVKP----VGTDGISVDGKVIQV 143 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd-~~~~~~~a~ll~y-DS~~G~f~~~v~~----~~~~~l~i~G~~I~v 143 (403)
||.|.|.|.+|..+++.|....-+ ++.-+.+ ..+++.+..-+-| .+.-|+.+.+.-. .-+..+.+ ..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~--~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i-----~~ 73 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVG--KITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNV-----TA 73 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC--EEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEE-----EE
Confidence 689999999999999999865422 3333433 3444444433333 2223544332110 00112222 22
Q ss_pred EecC-CCCCCCCCCcCccEEeeCCCCcCCHh
Q 015637 144 VSNR-NPVNLPWGDLGIDLVIEGTGVFVDRE 173 (403)
Q Consensus 144 ~~~~-dp~~i~w~~~gvDiV~e~tG~f~s~~ 173 (403)
+... +.........+.|+||+|+..+..+.
T Consensus 74 ~~~~~~~~~~~~~~~~~diVi~~~d~~~~~~ 104 (143)
T cd01483 74 VPEGISEDNLDDFLDGVDLVIDAIDNIAVRR 104 (143)
T ss_pred EeeecChhhHHHHhcCCCEEEECCCCHHHHH
Confidence 2211 11110000137899999998865543
No 131
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=87.21 E-value=0.76 Score=45.04 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=26.4
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
|.+||+|+|+|.+|+.+.+.|.... ++|.+.+
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g---~~v~~~d 32 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAG---YSLVVYD 32 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCC---CeEEEEc
Confidence 5579999999999999999998764 6776554
No 132
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=87.12 E-value=0.96 Score=40.65 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=24.2
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
+|||++|+|..|+.+.+.|.... ++|.+-|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g---~~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAG---YEVTVYD 31 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTT---TEEEEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcC---CeEEeec
Confidence 69999999999999999998875 7876555
No 133
>PLN02306 hydroxypyruvate reductase
Probab=87.05 E-value=0.74 Score=47.73 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=25.5
Q ss_pred ceeEEEEccChhHHHHHHHHH-cCCCCCceEEEEec
Q 015637 68 KLKVAINGFGRIGRNFLRCWH-GRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~-~~~~~~~evvaInd 102 (403)
.-+|||+|||+||+.+++.+. ... ++|.+.+-
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~fG---m~V~~~d~ 197 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDL 197 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC---CEEEEECC
Confidence 358999999999999999975 543 78776653
No 134
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=87.03 E-value=1.2 Score=42.11 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=24.0
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
|||+|.| +|.+|..+.+.|.+.. .+|+..+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G---~~V~v~~ 31 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG---NKIIIGS 31 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC---CEEEEEE
Confidence 4899997 9999999999998764 4655444
No 135
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.92 E-value=1.1 Score=43.29 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.0
Q ss_pred ceeEEEEccChhHHHHHHHHHcCC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
..||.|.|.|-+|-.+++.|....
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~G 34 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSG 34 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC
Confidence 458999999999999999998654
No 136
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=86.91 E-value=2.5 Score=43.15 Aligned_cols=92 Identities=22% Similarity=0.281 Sum_probs=54.1
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
++||||+|. .+|+..++++.+.+ +.+++|+|-|. +.+....+-+ .||- ..+ .
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~-~~~eLvaV~d~-~~erA~~~A~---~~gi--------------------~~y--~ 54 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAP-ERFELAGILAQ-GSERSRALAH---RLGV--------------------PLY--C 54 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCC-CCcEEEEEEcC-CHHHHHHHHH---HhCC--------------------Ccc--C
Confidence 479999999 67999999998764 14999999985 4443222211 1110 011 1
Q ss_pred CCCCCCCCCcCccEEeeC--CCCcCCHhhHHHHHHcCCCeEEEc
Q 015637 148 NPVNLPWGDLGIDLVIEG--TGVFVDREGAGKHIQAGAKKVLIT 189 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~--tG~f~s~~~a~~hl~aGakkVIIs 189 (403)
+.+++. .+-++|+|.=. +....-.+.+...+++|. .|++=
T Consensus 55 ~~eell-~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGk-HVL~E 96 (343)
T TIGR01761 55 EVEELP-DDIDIACVVVRSAIVGGQGSALARALLARGI-HVLQE 96 (343)
T ss_pred CHHHHh-cCCCEEEEEeCCCCCCccHHHHHHHHHhCCC-eEEEc
Confidence 222222 11244555442 234566788889999884 56663
No 137
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=86.75 E-value=0.78 Score=47.51 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=25.9
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
..+|||+|+|.||+.+.+.|.... ++|.+.+
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G---~~V~~~d 146 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALG---IKTLLCD 146 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CEEEEEC
Confidence 358999999999999999998765 7876553
No 138
>PLN03139 formate dehydrogenase; Provisional
Probab=86.61 E-value=0.76 Score=47.72 Aligned_cols=31 Identities=26% Similarity=0.302 Sum_probs=25.6
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
..+|||+|+|+||+.+++.|.... ++|.+.+
T Consensus 199 gktVGIVG~G~IG~~vA~~L~afG---~~V~~~d 229 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPFN---CNLLYHD 229 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHCC---CEEEEEC
Confidence 358999999999999999998654 7876554
No 139
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.03 E-value=1 Score=43.37 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=21.5
Q ss_pred CceeEEEEccChhHHHHHHHHHcC
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGR 90 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~ 90 (403)
|++||+|+|+|.+|..+++.|.+.
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~ 24 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLAS 24 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhC
Confidence 567999999999999999998765
No 140
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=85.82 E-value=2.7 Score=43.78 Aligned_cols=98 Identities=22% Similarity=0.225 Sum_probs=58.3
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~d 148 (403)
+||-|.|.|.||+.+++.|..+.+ .+|..... +++...... ++..++ + +.+.++ ..|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d--~~V~iAdR--s~~~~~~i~--~~~~~~----v-----~~~~vD--------~~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD--GEVTIADR--SKEKCARIA--ELIGGK----V-----EALQVD--------AAD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC--ceEEEEeC--CHHHHHHHH--hhcccc----c-----eeEEec--------ccC
Confidence 689999999999999999988753 66543332 233333332 121111 1 112221 112
Q ss_pred CCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEc
Q 015637 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (403)
Q Consensus 149 p~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIs 189 (403)
.+.+.=--.+.|+||.|.+.|....-.+..+++|..-+=+|
T Consensus 59 ~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts 99 (389)
T COG1748 59 VDALVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDTS 99 (389)
T ss_pred hHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCCEEEcc
Confidence 21110000245999999999999988889999998544333
No 141
>PLN02494 adenosylhomocysteinase
Probab=85.33 E-value=2.2 Score=45.54 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=25.5
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
-+|+|.|+|.||+.+++.+.... ..|++++
T Consensus 255 KtVvViGyG~IGr~vA~~aka~G---a~VIV~e 284 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAG---ARVIVTE 284 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 48999999999999999998765 6777665
No 142
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=85.29 E-value=1.4 Score=45.67 Aligned_cols=108 Identities=16% Similarity=0.251 Sum_probs=58.1
Q ss_pred EEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhcc-ccceecccCcceeeecC---CeEE--ECCEEEEEEe
Q 015637 73 ING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGIFEADVKPVGT---DGIS--VDGKVIQVVS 145 (403)
Q Consensus 73 InG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~-yDS~~G~f~~~v~~~~~---~~l~--i~G~~I~v~~ 145 (403)
|.| ||-||++.|+.+..+++ +|+|+++..-.+.+.+....+ |...+ +-+.++ ..+. +.|..++++.
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d-~f~v~~Laa~~n~~~L~~q~~~f~p~~------v~i~~~~~~~~l~~~l~~~~~~v~~ 73 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPE-HFKVVGLTANYNIELLEQQIKRFQPRI------VSVADKELADTLRTRLSANTSKITY 73 (383)
T ss_pred CCccccHHHHHHHHHHHhCcc-ccEEEEEECCCCHHHHHHHHHHhCCCE------EEEcCHHHHHHHHHhccCCCcEEEE
Confidence 679 99999999999987763 699999987445544433332 21111 110010 0000 0121133332
Q ss_pred cCC-CCCC-CCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcC
Q 015637 146 NRN-PVNL-PWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (403)
Q Consensus 146 ~~d-p~~i-~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsa 190 (403)
..+ ..++ .+ ..+|+|+.+.-.+...+-.-..+++| |++.+.|
T Consensus 74 G~~~l~~l~~~--~~~D~vv~AivG~aGL~pt~~Ai~~g-k~iaLAN 117 (383)
T PRK12464 74 GTDGLIAVATH--PGSDLVLSSVVGAAGLLPTIEALKAK-KDIALAN 117 (383)
T ss_pred CHHHHHHHHcC--CCCCEEEEhhhcHhhHHHHHHHHHCC-CcEEEec
Confidence 221 1111 11 25899999986565555555677777 5555544
No 143
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=85.12 E-value=2.2 Score=34.33 Aligned_cols=43 Identities=26% Similarity=0.394 Sum_probs=29.4
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhc
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLL 113 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll 113 (403)
||||.|+|.+|..+++-|.+.....-+|..+.+ .+++...++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~-r~~~~~~~~~ 43 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSS-RSPEKAAELA 43 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEE-SSHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeecc-CcHHHHHHHH
Confidence 799999999999999999876412246654533 2455554443
No 144
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=84.54 E-value=2.6 Score=40.31 Aligned_cols=92 Identities=20% Similarity=0.069 Sum_probs=51.9
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~d 148 (403)
++++|.|+|.||..+.+.|.... .||+-.+. -+++....+.+|- +.. |+- ...
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag---~eV~igs~-r~~~~~~a~a~~l--------------~~~-------i~~--~~~ 54 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAG---HEVIIGSS-RGPKALAAAAAAL--------------GPL-------ITG--GSN 54 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCC---CeEEEecC-CChhHHHHHHHhh--------------ccc-------ccc--CCh
Confidence 68999999999999999998764 67664433 2344333332210 111 111 111
Q ss_pred CCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCC
Q 015637 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (403)
Q Consensus 149 p~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsap 191 (403)
++.. .+.|+||-+..-.--.+-++.+.+.=..|+||+..
T Consensus 55 ~dA~----~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~t 93 (211)
T COG2085 55 EDAA----ALADVVVLAVPFEAIPDVLAELRDALGGKIVIDAT 93 (211)
T ss_pred HHHH----hcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEecC
Confidence 2211 25799999887544444444444322267999643
No 145
>PF12338 RbcS: Ribulose-1,5-bisphosphate carboxylase small subunit; InterPro: IPR024680 This domain is found in the N-terminal region of the small subunit of ribulose-1,5-bisphosphate in plants. It contains a conserved APF sequence motif. There are also two completely conserved residues (L and P) that may be functionally important.
Probab=84.50 E-value=0.53 Score=34.11 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=18.4
Q ss_pred CcccccccccccCCCCCCCCCC
Q 015637 18 KGFSEFSGLRNSASLPFGRKSS 39 (403)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~ 39 (403)
.-.+-|+|||+...+|..|+..
T Consensus 22 ~mVAPFtGLKS~a~fPvtrK~~ 43 (45)
T PF12338_consen 22 SMVAPFTGLKSTAAFPVTRKSN 43 (45)
T ss_pred ceeeccccccccccCccccccC
Confidence 4678999999999999877754
No 146
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=84.47 E-value=4.8 Score=40.24 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=24.1
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
..||+|+|+|.||+.+++.|..... -+|..+|
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~--~~V~v~~ 209 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGV--AEITIAN 209 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCC--CEEEEEe
Confidence 3689999999999999999987431 3444444
No 147
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=84.05 E-value=4.5 Score=39.78 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.4
Q ss_pred eEEEEccChhHHHHHHHHHcCC
Q 015637 70 KVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~ 91 (403)
+|.|+|.|.||...++++....
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G 168 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAG 168 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcC
Confidence 6999999999999998887664
No 148
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=83.93 E-value=2.4 Score=42.57 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.6
Q ss_pred eeEEEEccChhHHHHHHHHHcCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
.||+|.|.|.||..++-.|..++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~ 29 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQG 29 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC
Confidence 59999999999999999888764
No 149
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=83.88 E-value=4.8 Score=40.00 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=22.9
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCc-eEEEEe
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~-evvaIn 101 (403)
+|.|+|.|.||...++++.... . .|+++.
T Consensus 172 ~VlV~G~G~vG~~aiqlak~~G---~~~Vi~~~ 201 (343)
T PRK09880 172 RVFVSGVGPIGCLIVAAVKTLG---AAEIVCAD 201 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CcEEEEEe
Confidence 7999999999999999887764 4 455444
No 150
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=83.78 E-value=2.1 Score=43.16 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.1
Q ss_pred eeEEEEccChhHHHHHHHHHcCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
.||+|.|.|.+|..++..+..++
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~g 29 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKN 29 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC
Confidence 58999999999999998877654
No 151
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=83.65 E-value=1.4 Score=43.05 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=25.6
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
|||+|+|.|.+|..+.+.|.... ++|.+++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g---~~V~~~d 30 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLG---HTVYGVS 30 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCC---CEEEEEE
Confidence 48999999999999999998764 6777665
No 152
>PLN02712 arogenate dehydrogenase
Probab=83.42 E-value=1.6 Score=48.43 Aligned_cols=34 Identities=32% Similarity=0.482 Sum_probs=28.5
Q ss_pred cCceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 66 ~m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.+++||||+|+|.||+.+++.|...+ .+|++++.
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~~G---~~V~~~dr 400 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVKQG---HTVLAYSR 400 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHHCc---CEEEEEEC
Confidence 35689999999999999999998764 68887765
No 153
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=83.22 E-value=1.4 Score=45.62 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=25.7
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
..+|||+|+|.||+.+.+.|.... ++|.+.+
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~G---~~V~~~D 146 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGLG---WKVLVCD 146 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHCC---CEEEEEC
Confidence 357999999999999999998765 7876553
No 154
>PRK08605 D-lactate dehydrogenase; Validated
Probab=83.19 E-value=1.5 Score=44.42 Aligned_cols=31 Identities=42% Similarity=0.602 Sum_probs=24.2
Q ss_pred ceeEEEEccChhHHHHHHHHH-cCCCCCceEEEEe
Q 015637 68 KLKVAINGFGRIGRNFLRCWH-GRKDSPLEVVAIN 101 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~-~~~~~~~evvaIn 101 (403)
.++|||+|+|+||+.+.+.|. ... ++|.+.+
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g---~~V~~~d 177 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYG---SDVVAYD 177 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC---CEEEEEC
Confidence 458999999999999999984 332 6776554
No 155
>PLN02256 arogenate dehydrogenase
Probab=82.87 E-value=1.8 Score=43.33 Aligned_cols=34 Identities=29% Similarity=0.517 Sum_probs=27.8
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecC
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~ 103 (403)
.++||+|+|+|.+|+.+++.|.+.+ .+|++++..
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G---~~V~~~d~~ 68 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQG---HTVLATSRS 68 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC---CEEEEEECc
Confidence 3579999999999999999998754 688777653
No 156
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=82.81 E-value=7.2 Score=38.71 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.1
Q ss_pred ceeEEEEccChhHHHHHHHHHcCC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
++||+|+|.|.||..+...|.+..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g 28 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG 28 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC
Confidence 469999999999999999988754
No 157
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=82.66 E-value=3 Score=44.71 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=24.9
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
||||+|.|.+|+-+.+.+.... ++|+..+
T Consensus 9 ~V~VIGaG~MG~gIA~~la~aG---~~V~l~D 37 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQAG---HTVLLYD 37 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhCC---CeEEEEe
Confidence 7999999999999999988765 7877555
No 158
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=82.61 E-value=2.2 Score=44.06 Aligned_cols=43 Identities=30% Similarity=0.361 Sum_probs=34.8
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhh
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHL 112 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~l 112 (403)
.|+.|.| ||-||.+.|+++..+|+ .|+|+++..-...+.+...
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p~-~f~vval~ag~n~~~l~~q 45 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNPD-KFEVVALAAGKNVELLAEQ 45 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCCC-cEEEEEEecCCcHHHHHHH
Confidence 4899999 99999999999998874 6999999875455544433
No 159
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=82.60 E-value=1.5 Score=47.23 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=26.8
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
..+|||+|+|+||+.+++.|.... ++|.+.+.
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~fG---~~V~~~d~ 169 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAFG---MKVLAYDP 169 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEECC
Confidence 358999999999999999998764 78877754
No 160
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=82.10 E-value=2.9 Score=42.40 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=21.8
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEE
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaI 100 (403)
+|+|.|.|.||...+.++.-.. --+|+++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~G--a~~Viv~ 199 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLG--ASVVIVV 199 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcC--CceEEEe
Confidence 8999999999998876665543 2466655
No 161
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=81.98 E-value=1.6 Score=46.99 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=27.1
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
..+|||+|+|+||+.+.+.|.... ++|.+.+.
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~fG---~~V~~~d~ 171 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAFG---MKVIAYDP 171 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEECC
Confidence 458999999999999999998764 78877764
No 162
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=81.78 E-value=3.2 Score=41.58 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=24.8
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
|||+|.| +|.||..++..|..++- ..+|+.+.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~-~~~v~lvd 33 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDV-VKEINLIS 33 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEE
Confidence 5899999 59999999999987641 23566654
No 163
>PRK08818 prephenate dehydrogenase; Provisional
Probab=81.75 E-value=2.9 Score=43.25 Aligned_cols=31 Identities=35% Similarity=0.421 Sum_probs=24.5
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHcCCCCCceEEEE
Q 015637 68 KLKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAI 100 (403)
Q Consensus 68 ~ikVaInGf-GrIGr~vlr~l~~~~~~~~evvaI 100 (403)
+.||+|+|. |.||+.+.++|.+.. ..+|.++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~--~~~V~g~ 35 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM--QLEVIGH 35 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC--CCEEEEE
Confidence 468999998 999999999998652 2666544
No 164
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=81.65 E-value=3.5 Score=41.76 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.3
Q ss_pred eeEEEEccChhHHHHHHHHHcCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
+||+|.|.|.||..++-+|..+.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~ 23 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQG 23 (313)
T ss_pred CeEEEECCChHHHHHHHHHhccc
Confidence 48999999999999999997654
No 165
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=81.53 E-value=2.3 Score=45.58 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=25.5
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
.||||+|.|..|+.+...+.... ++|+..+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG---~~V~l~d 35 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAG---HQVLLYD 35 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCC---CeEEEEe
Confidence 37999999999999999998765 7877665
No 166
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=81.29 E-value=1 Score=37.06 Aligned_cols=92 Identities=26% Similarity=0.310 Sum_probs=55.6
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEE-ec
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV-SN 146 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~-~~ 146 (403)
+.||+|.|.|+.|+.++...+... .+.++++-|. +++ +. + -.++| ++++ ..
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~--g~~i~~~~dv-~~~-------------~~--------G--~~i~g--ipV~~~~ 54 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMR--GFGIVAVFDV-DPE-------------KI--------G--KEIGG--IPVYGSM 54 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHH--CECEEEEEEE-CTT-------------TT--------T--SEETT--EEEESSH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHc--CCCCEEEEEc-CCC-------------cc--------C--cEECC--EEeeccH
Confidence 468999999999998875454432 2787777653 111 00 1 11333 4454 21
Q ss_pred CCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCC
Q 015637 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (403)
Q Consensus 147 ~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsap 191 (403)
.+..+.- ++|+.+-|.+.....+.+...+++|.|-++.-+|
T Consensus 55 ~~l~~~~----~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 55 DELEEFI----EIDIAIITVPAEAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp HHHHHHC----TTSEEEEES-HHHHHHHHHHHHHTT-SEEEEESS
T ss_pred HHhhhhh----CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 2221111 3899999998777777788888999988776443
No 167
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=81.25 E-value=6.5 Score=37.72 Aligned_cols=30 Identities=17% Similarity=0.369 Sum_probs=26.1
Q ss_pred eEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 70 kVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
+|-|-| +|-||+.+++.|.++. .+|+++..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g---~~V~~~~r 32 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAG---HDVRGLDR 32 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCC---CeEEEEeC
Confidence 489999 9999999999999874 78888875
No 168
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=81.01 E-value=2 Score=43.75 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=26.4
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-+|||+|+|+||+.+++.|.... ++|++.++
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G---~~ViV~~r 47 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSG---VEVVVGVR 47 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCc---CEEEEEEC
Confidence 47999999999999999998765 88876654
No 169
>PLN02712 arogenate dehydrogenase
Probab=80.66 E-value=2 Score=47.61 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=27.2
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
++||||+|+|+||+.+.+.|.... ++|++++.
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G---~~V~~~dr 83 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQG---HTVLAHSR 83 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 468999999999999999998764 78877765
No 170
>PLN02214 cinnamoyl-CoA reductase
Probab=80.40 E-value=6.9 Score=39.17 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=26.1
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.+|.|-| +|.||+.+++.|.++. .+|+++..
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r 42 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLERG---YTVKGTVR 42 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc---CEEEEEeC
Confidence 5799999 8999999999999875 67776653
No 171
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=79.96 E-value=1.1 Score=45.13 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=23.4
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEE
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaI 100 (403)
.||+|.|.|.||..++-.|..++- .-|++-+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~-~~el~Li 34 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGL-ADELVLV 34 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-CCEEEEE
Confidence 599999999999999988876541 1355544
No 172
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=79.91 E-value=9.3 Score=41.84 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=25.4
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-.|.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G---~~Vval~R 112 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLG---FRVRAGVR 112 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CeEEEEeC
Confidence 3688999 9999999999998875 67776643
No 173
>PLN00106 malate dehydrogenase
Probab=78.81 E-value=13 Score=37.79 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=19.9
Q ss_pred eeEEEEcc-ChhHHHHHHHHHcCC
Q 015637 69 LKVAINGF-GRIGRNFLRCWHGRK 91 (403)
Q Consensus 69 ikVaInGf-GrIGr~vlr~l~~~~ 91 (403)
.||+|.|. |.||..++..|..++
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~ 42 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNP 42 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 49999996 999999999888654
No 174
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.69 E-value=1.6 Score=39.97 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.7
Q ss_pred eEEEEccChhHHHHHHHHHcCC
Q 015637 70 KVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~ 91 (403)
||+|.|.|-+|..++..|....
T Consensus 1 ~VlViG~GglGs~ia~~La~~G 22 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG 22 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC
Confidence 6899999999999999998654
No 175
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=78.44 E-value=2.6 Score=40.80 Aligned_cols=123 Identities=17% Similarity=0.231 Sum_probs=61.4
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEec-CCChhHHhhhcccc-ceecccCcceee----ecCCeEEECCEEEEE
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADVKP----VGTDGISVDGKVIQV 143 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd-~~~~~~~a~ll~yD-S~~G~f~~~v~~----~~~~~l~i~G~~I~v 143 (403)
||.|+|.|-+|..+++.|...+-+.+.| |.+ ..+...+..-+-|. +..|+.+..+-. .-+..+. |..
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~i--vD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~-----i~~ 73 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHV--IDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCK-----VVP 73 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEE--EeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCE-----EEE
Confidence 6899999999999999998654233333 333 33433333322232 223665543310 0011111 221
Q ss_pred EecC-CC-CCCC---CCCcCccEEeeCCCCcCCHhhHHHH-HHcCCCeEEEcCCCC---CCCCeEEeec
Q 015637 144 VSNR-NP-VNLP---WGDLGIDLVIEGTGVFVDREGAGKH-IQAGAKKVLITAPGK---GDIPTYVVGV 203 (403)
Q Consensus 144 ~~~~-dp-~~i~---w~~~gvDiV~e~tG~f~s~~~a~~h-l~aGakkVIIsaps~---~dvp~vV~gV 203 (403)
..++ ++ ..++ | .+.|+||+|+..+.++.+.-.. .+.+. -+|.+... +.+-.++|+.
T Consensus 74 ~~~~i~~~~~~~~~f~--~~~DvVi~a~Dn~~aR~~ln~~c~~~~i--plI~~g~~G~~G~v~vi~p~~ 138 (234)
T cd01484 74 YQNKVGPEQDFNDTFF--EQFHIIVNALDNIIARRYVNGMLIFLIV--PLIESGTEGFKGNAQVILPGM 138 (234)
T ss_pred EeccCChhhhchHHHH--hCCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEcccCCceEEEEEcCCC
Confidence 1111 01 1111 3 3789999999988766554432 33343 45544432 2344555553
No 176
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=77.72 E-value=5.9 Score=39.51 Aligned_cols=86 Identities=16% Similarity=0.077 Sum_probs=54.2
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
-||-|.| +|++|+.+++-+..-+. -.+..||- |++..+ +.| ++.+ +
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~--~~v~~V~p-----------------~~~~~~----------v~G--~~~y--~ 53 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGT--NIVGGVTP-----------------GKGGTT----------VLG--LPVF--D 53 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCC--CEEEEECC-----------------CCCcce----------ecC--eecc--C
Confidence 4899999 99999999998876541 25555662 111111 112 1222 3
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEE
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVII 188 (403)
..+++|..- ++|+++-+.+...-.+-.+...++|+|.+||
T Consensus 54 sv~dlp~~~-~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avI 93 (286)
T TIGR01019 54 SVKEAVEET-GANASVIFVPAPFAADAIFEAIDAGIELIVC 93 (286)
T ss_pred CHHHHhhcc-CCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence 344444311 3799999988777667777777889887665
No 177
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=77.06 E-value=3.2 Score=41.01 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=25.8
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|||||+|+|.+|+.+++.|.+.. ++|+..|.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g---~~v~v~dr 31 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG---HEVVGYDR 31 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCC---CeEEEEEC
Confidence 38999999999999999998764 67766653
No 178
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=76.63 E-value=12 Score=39.69 Aligned_cols=88 Identities=19% Similarity=0.191 Sum_probs=55.8
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec-CCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEec
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd-~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~ 146 (403)
..||+|.|+|+-|+.++|.|.++. .+|. ++| ...+... ....+... .|.+...
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G---~~v~-v~D~~~~~~~~--------------------~~~~~~~~--~i~~~~g 60 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG---AEVT-VSDDRPAPEGL--------------------AAQPLLLE--GIEVELG 60 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC---CeEE-EEcCCCCccch--------------------hhhhhhcc--CceeecC
Confidence 468999999999999999999875 5654 444 2111000 00000011 1222222
Q ss_pred CCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCC
Q 015637 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184 (403)
Q Consensus 147 ~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGak 184 (403)
+.+. .+|. ..|+|+-+=|...+.+...+..++|++
T Consensus 61 ~~~~-~~~~--~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 61 SHDD-EDLA--EFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred ccch-hccc--cCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 2232 4454 789999999999999988888888983
No 179
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=76.57 E-value=3.9 Score=38.68 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=25.3
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCce-EEEEec
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIND 102 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~e-vvaInd 102 (403)
.+||+|.|.|++|+.+++.|..++...++ ++..++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~ 39 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR 39 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC
Confidence 47899999999999999988765311244 545554
No 180
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.41 E-value=12 Score=39.69 Aligned_cols=83 Identities=16% Similarity=0.132 Sum_probs=49.6
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~d 148 (403)
-||.|.|+|+.|+..++.|..+. .+|+ +.|. .++....+.+ .+-.+ +. ....
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G---~~v~-~~D~-~~~~~~~l~~---------------~g~~~-~~-------~~~~ 64 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG---ARPT-VCDD-DPDALRPHAE---------------RGVAT-VS-------TSDA 64 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC---CEEE-EEcC-CHHHHHHHHh---------------CCCEE-Ec-------Ccch
Confidence 38999999999999999988775 5655 4653 2222221111 01011 11 1112
Q ss_pred CCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCC
Q 015637 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (403)
Q Consensus 149 p~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGa 183 (403)
++.+. +.|+||.|.|.-.+.+......++|.
T Consensus 65 ~~~l~----~~D~VV~SpGi~~~~p~~~~a~~~gi 95 (488)
T PRK03369 65 VQQIA----DYALVVTSPGFRPTAPVLAAAAAAGV 95 (488)
T ss_pred HhHhh----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 22232 56999999998877666666666676
No 181
>PLN02602 lactate dehydrogenase
Probab=76.06 E-value=1.9 Score=44.13 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.4
Q ss_pred eeEEEEccChhHHHHHHHHHcCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
.||+|.|.|.||..++-.|..++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~ 60 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQD 60 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC
Confidence 59999999999999999887654
No 182
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=76.01 E-value=2.5 Score=43.18 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=25.0
Q ss_pred ccccccccCceeEEEEccChhHHHHHHHHHcC
Q 015637 59 GYRKVAAQAKLKVAINGFGRIGRNFLRCWHGR 90 (403)
Q Consensus 59 ~~~~~~~~m~ikVaInGfGrIGr~vlr~l~~~ 90 (403)
+...+...+.-+|+|+|+|+||+.+++-|...
T Consensus 153 ~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F 184 (336)
T KOG0069|consen 153 GWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF 184 (336)
T ss_pred CccccccccCCEEEEecCcHHHHHHHHhhhhc
Confidence 34444555666999999999999999988753
No 183
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=75.90 E-value=1.8 Score=41.14 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.2
Q ss_pred ceeEEEEccChhHHHHHHHHHcCC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
..||.|+|.|.+|..+++.|....
T Consensus 21 ~~~VlivG~GglGs~va~~La~~G 44 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAG 44 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC
Confidence 468999999999999999998654
No 184
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=75.53 E-value=4.2 Score=44.51 Aligned_cols=40 Identities=25% Similarity=0.435 Sum_probs=31.8
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhh
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASH 111 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ 111 (403)
.+.+|-|.|+||+||.+.|.|.++. .++++|.. |++....
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~--d~~~v~~ 438 (601)
T PRK03659 399 DKPQVIIVGFGRFGQVIGRLLMANK---MRITVLER--DISAVNL 438 (601)
T ss_pred ccCCEEEecCchHHHHHHHHHHhCC---CCEEEEEC--CHHHHHH
Confidence 3568999999999999999998775 78888874 5655433
No 185
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=75.42 E-value=3.6 Score=38.12 Aligned_cols=30 Identities=20% Similarity=0.489 Sum_probs=23.5
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
|||+|.|.|.||-.++-++.+.. ++|+++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G---~~V~g~D 30 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG---HQVIGVD 30 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT---SEEEEE-
T ss_pred CEEEEECCCcchHHHHHHHHhCC---CEEEEEe
Confidence 69999999999999998888875 8998885
No 186
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=75.23 E-value=12 Score=38.19 Aligned_cols=80 Identities=20% Similarity=0.219 Sum_probs=50.5
Q ss_pred CceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEE-ecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEE
Q 015637 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAI-NDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (403)
Q Consensus 67 m~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaI-nd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~ 144 (403)
+..+|.|-| .|-||.-+++.|++|+ ..|.+- .+..+.+...||.+.+. .++.+ .++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG---Y~V~gtVR~~~~~k~~~~L~~l~~------------a~~~l-------~l~ 62 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG---YTVRGTVRDPEDEKKTEHLRKLEG------------AKERL-------KLF 62 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC---CEEEEEEcCcchhhhHHHHHhccc------------Ccccc-------eEE
Confidence 446899999 9999999999999986 455544 44445555556765432 11111 222
Q ss_pred e--cCCCCCCCCCCcCccEEeeCCCC
Q 015637 145 S--NRNPVNLPWGDLGIDLVIEGTGV 168 (403)
Q Consensus 145 ~--~~dp~~i~w~~~gvDiV~e~tG~ 168 (403)
. -.|+..|+=.-.|+|.||-++..
T Consensus 63 ~aDL~d~~sf~~ai~gcdgVfH~Asp 88 (327)
T KOG1502|consen 63 KADLLDEGSFDKAIDGCDGVFHTASP 88 (327)
T ss_pred eccccccchHHHHHhCCCEEEEeCcc
Confidence 1 23555555444588999887643
No 187
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=75.18 E-value=19 Score=34.93 Aligned_cols=83 Identities=19% Similarity=0.162 Sum_probs=49.7
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~d 148 (403)
-+|.|+|.|.+|+.+++++.... .+++++.. ..+...++.++.. +.. ++- ++
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~G---~~vi~~~~--~~~~~~~~~~~g~-------~~~--------~~~--------~~ 208 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALTG---PDVVLVGR--HSEKLALARRLGV-------ETV--------LPD--------EA 208 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEcC--CHHHHHHHHHcCC-------cEE--------eCc--------cc
Confidence 47899999999999999988775 67666643 2343333332211 000 100 01
Q ss_pred CCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCC
Q 015637 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (403)
Q Consensus 149 p~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGa 183 (403)
+ .++ .++|++|||+|.-...+.+..+++.+.
T Consensus 209 ~--~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g 239 (319)
T cd08242 209 E--SEG--GGFDVVVEATGSPSGLELALRLVRPRG 239 (319)
T ss_pred c--ccC--CCCCEEEECCCChHHHHHHHHHhhcCC
Confidence 1 122 379999999986444455666776665
No 188
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=75.16 E-value=2.2 Score=40.14 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.2
Q ss_pred ceeEEEEccChhHHHHHHHHHcCC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
..||+|+|.|.+|..++..|....
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~G 44 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAG 44 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC
Confidence 468999999999999999998664
No 189
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=75.15 E-value=4 Score=40.39 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=25.7
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|||||+|+|.+|+.+.+.|.+.. ++|+..|.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g---~~v~v~dr 31 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDG---HEVVGYDV 31 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCC---CEEEEEEC
Confidence 37999999999999999998764 77776553
No 190
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=75.15 E-value=1.6 Score=43.99 Aligned_cols=118 Identities=18% Similarity=0.154 Sum_probs=57.4
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEec-CCChhHHhh--hccccc-eecccCccee---e-ecCCeEEECCEEE
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASH--LLKYDS-TLGIFEADVK---P-VGTDGISVDGKVI 141 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd-~~~~~~~a~--ll~yDS-~~G~f~~~v~---~-~~~~~l~i~G~~I 141 (403)
||.|+|.|-+|-.+++.|..-.-+.+.+ +.+ ..+.+.+.. |+..+. .-|+.+...- + .-+..+.+.+...
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~Itl--vD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~ 78 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITF--VDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVL 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEE--ECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeee
Confidence 6899999999999999998654222332 332 222222222 222222 1255443211 0 0122233333222
Q ss_pred EEE-------------ecCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcC
Q 015637 142 QVV-------------SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (403)
Q Consensus 142 ~v~-------------~~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsa 190 (403)
.|- ...+.+++.=--.+.|+||+|+..+.++ +...-+..-.+|.+|++
T Consensus 79 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR-~L~~~~~~~~~k~~I~a 139 (307)
T cd01486 79 SIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESR-WLPTLLSAAKNKLVINA 139 (307)
T ss_pred eccccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHH-HHHHHHHHHhCCcEEEE
Confidence 220 0011111110013679999999988775 45444444455677764
No 191
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=75.04 E-value=5.2 Score=33.14 Aligned_cols=29 Identities=38% Similarity=0.656 Sum_probs=23.7
Q ss_pred EEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 71 VAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 71 VaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|-|.|+|++|+.+++.|.++. .+++.|..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~---~~vvvid~ 29 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG---IDVVVIDR 29 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT---SEEEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCC---CEEEEEEC
Confidence 568999999999999999853 68888875
No 192
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=75.03 E-value=37 Score=32.96 Aligned_cols=84 Identities=19% Similarity=0.151 Sum_probs=50.5
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCCC
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNP 149 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~dp 149 (403)
+|.|.|.|.+|+.+++++.... ++++++.+. .+....+-+ +|- ...++ .+++
T Consensus 170 ~vlV~g~g~vg~~~~~la~~~g---~~v~~~~~~--~~~~~~~~~----~g~-----------~~~~~--------~~~~ 221 (329)
T cd08298 170 RLGLYGFGASAHLALQIARYQG---AEVFAFTRS--GEHQELARE----LGA-----------DWAGD--------SDDL 221 (329)
T ss_pred EEEEECCcHHHHHHHHHHHHCC---CeEEEEcCC--hHHHHHHHH----hCC-----------cEEec--------cCcc
Confidence 6889999999999999877664 787766543 121111111 110 00111 0111
Q ss_pred CCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeE
Q 015637 150 VNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186 (403)
Q Consensus 150 ~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkV 186 (403)
.+.++|++++++|.....+.+..+++.+..-+
T Consensus 222 -----~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v 253 (329)
T cd08298 222 -----PPEPLDAAIIFAPVGALVPAALRAVKKGGRVV 253 (329)
T ss_pred -----CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEE
Confidence 12378999999876666677778888776433
No 193
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=74.88 E-value=4.3 Score=39.47 Aligned_cols=102 Identities=25% Similarity=0.411 Sum_probs=58.7
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCC---------ChhHHhhhccccceecc-cCcceeeecCCeEEEC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG---------GVKQASHLLKYDSTLGI-FEADVKPVGTDGISVD 137 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~---------~~~~~a~ll~yDS~~G~-f~~~v~~~~~~~l~i~ 137 (403)
..+|+|=|||.||+.+++.|.+.. ..+|+|.|.. +++.+..+. +. +|. +..... ...+
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~G---a~vv~vsD~~G~i~~~~Gld~~~l~~~~--~~-~~~~v~~~~~-~~~~----- 99 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAELG---AKVVAVSDSSGAIYDPDGLDVEELLRIK--EE-RGSRVDDYPL-ESPD----- 99 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT---EEEEEEEESSEEEEETTEEHHHHHHHHH--HH-HSSHSTTGTH-TCSS-----
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC---CEEEEEecCceEEEcCCCchHHHHHHHH--HH-hCCccccccc-cccc-----
Confidence 468999999999999999999875 8999997631 223222221 11 111 111000 0000
Q ss_pred CEEEEEEecCCCCCCCCCCcCccEEeeCC-CCcCCHhhHHHHHHcCCCeEEE
Q 015637 138 GKVIQVVSNRNPVNLPWGDLGIDLVIEGT-GVFVDREGAGKHIQAGAKKVLI 188 (403)
Q Consensus 138 G~~I~v~~~~dp~~i~w~~~gvDiV~e~t-G~f~s~~~a~~hl~aGakkVII 188 (403)
+ ...+.. .+++ |. ..+||.+=|+ +.-++.+.++..++.|||- |+
T Consensus 100 ~--~~~~~~--~~~i-l~-~~~DiliP~A~~~~I~~~~~~~~i~~~aki-Iv 144 (244)
T PF00208_consen 100 G--AEYIPN--DDEI-LS-VDCDILIPCALGNVINEDNAPSLIKSGAKI-IV 144 (244)
T ss_dssp T--SEEECH--HCHG-GT-SSSSEEEEESSSTSBSCHHHCHCHHTT-SE-EE
T ss_pred c--eeEecc--cccc-cc-ccccEEEEcCCCCeeCHHHHHHHHhccCcE-EE
Confidence 0 011111 1111 33 5799999887 7788888888777888854 44
No 194
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=74.72 E-value=2.5 Score=40.05 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.0
Q ss_pred ceeEEEEccChhHHHHHHHHHcCC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
..||+|+|.|-+|-.++..|....
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~G 51 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSG 51 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 358999999999999999998654
No 195
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=74.51 E-value=11 Score=38.09 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=24.1
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
+|.|.|.|.||...++++.... .+++++..
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~G---a~vi~~~~ 215 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAFG---LKVTVISS 215 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 7899999999999999887764 56666543
No 196
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=74.48 E-value=5.4 Score=39.13 Aligned_cols=30 Identities=30% Similarity=0.551 Sum_probs=26.7
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
|||-|.| .|.+|+.+.+.|.++. +++++++
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~---~~v~~~~ 31 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG---YEVIATS 31 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS---EEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC---CEEEEeC
Confidence 6999999 9999999999998764 8988885
No 197
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=74.18 E-value=4.6 Score=40.05 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=25.0
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
+||+|.|+|.+|+.+.+.|.... .+|...+
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G---~~V~~~~ 34 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANG---HRVRVWS 34 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCC---CEEEEEe
Confidence 58999999999999999998764 5765454
No 198
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=74.17 E-value=4.5 Score=40.20 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.5
Q ss_pred CceeEEEEccChhHHHHHHHHHcCC
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
+.++|+|.|+|.||+.+.|.|.++.
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g 26 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAG 26 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcC
Confidence 4579999999999999999998875
No 199
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=74.09 E-value=4.3 Score=40.18 Aligned_cols=31 Identities=26% Similarity=0.557 Sum_probs=25.8
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|||||+|+|++|..+.+.|.+.. ++|+..|-
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g---~~V~~~dr 31 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRG---HDCVGYDH 31 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCC---CEEEEEEC
Confidence 38999999999999999998764 78776653
No 200
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=74.08 E-value=3.7 Score=40.62 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=21.0
Q ss_pred ceeEEEEccChhHHHHHHHHHcCC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
..+|.|.|.|-||-.++..|....
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~G 53 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTG 53 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 458999999999999999998654
No 201
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=74.01 E-value=7.2 Score=38.35 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=24.1
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCce-EEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~e-vvaIn 101 (403)
-+|.|+|.|.||...++++.... .. |+++.
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G---~~~vi~~~ 195 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALG---AEDVIGVD 195 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEEC
Confidence 47999999999999999887764 45 76664
No 202
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=73.90 E-value=4.6 Score=44.41 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=30.1
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHH
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQA 109 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~ 109 (403)
.-+|-|.|+||+||.+.|.|.++. ++++.|.. |++..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~--d~~~v 436 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG---VKMTVLDH--DPDHI 436 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC---CCEEEEEC--CHHHH
Confidence 458999999999999999999875 78888864 45544
No 203
>PLN02688 pyrroline-5-carboxylate reductase
Probab=73.84 E-value=4.7 Score=38.71 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=25.0
Q ss_pred eeEEEEccChhHHHHHHHHHcCCC-CCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~-~~~evvaInd 102 (403)
|||+++|+|.+|..+++.|.+... ...+|+..++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~ 35 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADD 35 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeC
Confidence 579999999999999999987531 1126665634
No 204
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=73.80 E-value=2.1 Score=40.06 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.2
Q ss_pred ceeEEEEccChhHHHHHHHHHcCC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
.-||.|.|.|.+|..+++.|....
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~G 44 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAG 44 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC
Confidence 358999999999999999998764
No 205
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=73.52 E-value=5 Score=40.31 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=30.4
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecC
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~ 103 (403)
|.++|-|.|||.||+..+|.|..++ .+|+|+.-+.
T Consensus 1 m~~~vvqyGtG~vGv~air~l~akp--e~elvgawv~ 35 (350)
T COG3804 1 MSLRVVQYGTGSVGVAAIRGLLAKP--ELELVGAWVH 35 (350)
T ss_pred CCceeEEeccchHHHHHHHHHHcCC--CCceEEEEec
Confidence 6789999999999999999999876 4999987653
No 206
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=73.40 E-value=5.1 Score=39.65 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=24.4
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
..||+|+|+|.+|+.+.+.|..... ..+|.+++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~-~~~V~~~d 38 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGL-AGEIVGAD 38 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCC-CcEEEEEE
Confidence 3589999999999999999886531 12555454
No 207
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=73.36 E-value=20 Score=37.67 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=29.0
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~ 103 (403)
..||+|-|||.||+..++.|.+.. -+||++.|+
T Consensus 207 G~rVaVQG~GNVg~~aa~~l~~~G---Akvva~sds 239 (411)
T COG0334 207 GARVAVQGFGNVGQYAAEKLHELG---AKVVAVSDS 239 (411)
T ss_pred CCEEEEECccHHHHHHHHHHHHcC---CEEEEEEcC
Confidence 368999999999999999998765 699999985
No 208
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=72.79 E-value=4.5 Score=41.79 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=26.6
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|+|.|.|+|++|+.+.+.|.++. .+++.|..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g---~~v~vid~ 31 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN---NDVTVIDT 31 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CcEEEEEC
Confidence 48999999999999999998764 78887864
No 209
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=72.61 E-value=8.9 Score=36.99 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=22.7
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCce-EEEE
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLE-VVAI 100 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~e-vvaI 100 (403)
+|.|.|.|.||...++++.... .. |+++
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~G---~~~Vi~~ 151 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAG---AARVVAA 151 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCEEEEE
Confidence 7899999999999999887664 55 6555
No 210
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.33 E-value=23 Score=37.24 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=25.3
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
-+|.|.|.|.+|..+++.|.++. .+|+.++
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G---~~V~~~d 46 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG---ARVTVVD 46 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 37999999999999999998875 6766554
No 211
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=72.26 E-value=4.7 Score=41.45 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=24.6
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-.+||.|||+||+++.+.+.... +.++.-.+
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~g---m~vI~~dp 177 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMG---MHVIGYDP 177 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcC---ceEEeecC
Confidence 36999999999999999988764 66655444
No 212
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=72.21 E-value=6.2 Score=41.40 Aligned_cols=30 Identities=27% Similarity=0.477 Sum_probs=25.6
Q ss_pred ceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEE
Q 015637 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAI 100 (403)
Q Consensus 68 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaI 100 (403)
...|.|.| +|++||++.+.|.++. |.+.+.
T Consensus 79 ~~~VlVvGatG~vG~~iv~~llkrg---f~vra~ 109 (411)
T KOG1203|consen 79 PTTVLVVGATGKVGRRIVKILLKRG---FSVRAL 109 (411)
T ss_pred CCeEEEecCCCchhHHHHHHHHHCC---Ceeeee
Confidence 46899999 9999999999999986 666544
No 213
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=72.15 E-value=4.4 Score=39.69 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=24.9
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
||||+|+|.+|+.+.+.|.+.. ++|...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G---~~V~~~d 29 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG---YQLHVTT 29 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC---CeEEEEc
Confidence 6999999999999999998765 7877665
No 214
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=71.88 E-value=50 Score=30.98 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=25.1
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-||-|+|.|.||...++.|.+.+ -+|+.|+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g---a~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG---AHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CeEEEEcC
Confidence 38999999999999999998765 46665664
No 215
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=71.76 E-value=5.2 Score=42.73 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=25.7
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
.-+|+|.|+|+|||.+++.+.... .+|++++
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~G---a~ViV~e 284 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFG---ARVVVTE 284 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 358999999999999999998775 6766554
No 216
>PLN02778 3,5-epimerase/4-reductase
Probab=71.20 E-value=6 Score=38.94 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=26.4
Q ss_pred cccCceeEEEEc-cChhHHHHHHHHHcCCCCCceEE
Q 015637 64 AAQAKLKVAING-FGRIGRNFLRCWHGRKDSPLEVV 98 (403)
Q Consensus 64 ~~~m~ikVaInG-fGrIGr~vlr~l~~~~~~~~evv 98 (403)
+..|++||-|-| +|.||+.+++.|.+++ .+|+
T Consensus 5 ~~~~~~kiLVtG~tGfiG~~l~~~L~~~g---~~V~ 37 (298)
T PLN02778 5 AGSATLKFLIYGKTGWIGGLLGKLCQEQG---IDFH 37 (298)
T ss_pred CCCCCCeEEEECCCCHHHHHHHHHHHhCC---CEEE
Confidence 345667999999 9999999999998875 5664
No 217
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=71.05 E-value=6.2 Score=36.31 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=23.1
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
||||+|.|.+|+.+...+.... ++|+-++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d 29 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG---YEVTLYD 29 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT---SEEEEE-
T ss_pred CEEEEcCCHHHHHHHHHHHhCC---CcEEEEE
Confidence 7999999999999999888775 7876554
No 218
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=70.60 E-value=7.5 Score=39.56 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.1
Q ss_pred ceeEEEEccChhHHHHHHHHHcCC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
..||.|+|.|.+|..+++.|....
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aG 47 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAG 47 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC
Confidence 358999999999999999998764
No 219
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=70.53 E-value=12 Score=39.42 Aligned_cols=81 Identities=15% Similarity=0.207 Sum_probs=51.5
Q ss_pred eeEEEEcc----ChhHHHHHHHHHcCCCCCc--eEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEE
Q 015637 69 LKVAINGF----GRIGRNFLRCWHGRKDSPL--EVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQ 142 (403)
Q Consensus 69 ikVaInGf----GrIGr~vlr~l~~~~~~~~--evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~ 142 (403)
-+|+|+|. |.+|+.+++.|.+.. | +|..||-- |+. +.|. +
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~g---f~g~v~~Vnp~-----------~~~------------------i~G~--~ 53 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGG---YKGKIYPVNPK-----------AGE------------------ILGV--K 53 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCC---CCCcEEEECCC-----------CCc------------------cCCc--c
Confidence 47999994 889999999998764 4 66667631 111 1221 1
Q ss_pred EEecCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEE
Q 015637 143 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (403)
Q Consensus 143 v~~~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVII 188 (403)
++ .+.+++| ..+|+++-+++.....+-.+...++|+|.+||
T Consensus 54 ~~--~sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi 94 (447)
T TIGR02717 54 AY--PSVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV 94 (447)
T ss_pred cc--CCHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence 21 2233343 25788888877666666666777778877655
No 220
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=70.44 E-value=19 Score=33.05 Aligned_cols=23 Identities=26% Similarity=0.673 Sum_probs=18.7
Q ss_pred eeEEEEccChhHHHHHHHHHcCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
-++.|.|||.+||-+++.|....
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~G 46 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLG 46 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT
T ss_pred CEEEEeCCCcccHHHHHHHhhCC
Confidence 47999999999999999998875
No 221
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=70.31 E-value=9.7 Score=38.32 Aligned_cols=29 Identities=31% Similarity=0.405 Sum_probs=23.0
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCc-eEEEEe
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~-evvaIn 101 (403)
+|.|+|.|.||...++++.... . .|+++.
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~G---~~~Vi~~~ 223 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAAG---ASQVVAVD 223 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCcEEEEc
Confidence 7999999999999998887664 5 465554
No 222
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=70.16 E-value=8.8 Score=38.81 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=19.8
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHcC
Q 015637 68 KLKVAINGF-GRIGRNFLRCWHGR 90 (403)
Q Consensus 68 ~ikVaInGf-GrIGr~vlr~l~~~ 90 (403)
+.||+|.|. |.||..++-.|..+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~ 25 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASG 25 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 469999996 99999999888754
No 223
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=70.00 E-value=23 Score=36.30 Aligned_cols=93 Identities=22% Similarity=0.239 Sum_probs=58.4
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~d 148 (403)
-+|+|.|+|-+|..-++.+.... .+|+++.-.-+....+.-| |....++.+ |
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~g---a~Via~~~~~~K~e~a~~l-----------------GAd~~i~~~--------~ 219 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMG---AEVIAITRSEEKLELAKKL-----------------GADHVINSS--------D 219 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CeEEEEeCChHHHHHHHHh-----------------CCcEEEEcC--------C
Confidence 48999999999999999887664 7999987542322222111 222223221 2
Q ss_pred CCCCC-CCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCC
Q 015637 149 PVNLP-WGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (403)
Q Consensus 149 p~~i~-w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsap 191 (403)
++.++ ..+ -+|+++++.+ ..+.+.+-..++.|-+-|++-.|
T Consensus 220 ~~~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 220 SDALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred chhhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence 21111 111 2899999999 77777777888877666666655
No 224
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=69.99 E-value=3 Score=40.34 Aligned_cols=99 Identities=18% Similarity=0.237 Sum_probs=50.8
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec-CCChhHHhhhcccc-ceecccCccee---e-ecCCeEEECCEEE
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADVK---P-VGTDGISVDGKVI 141 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd-~~~~~~~a~ll~yD-S~~G~f~~~v~---~-~~~~~l~i~G~~I 141 (403)
.-||.|+|.|-+|..+++.|..-.-+.+.| |.+ ..+...+..-+-|+ ...|+.+..+- + .-+..+.+
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~l--vD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i----- 104 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTL--VDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAI----- 104 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEE--EcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEE-----
Confidence 358999999999999999998654222332 433 33333333322232 22355433210 0 01122222
Q ss_pred EEEecC-CCCCCC--CCCcCccEEeeCCCCcCCHhhH
Q 015637 142 QVVSNR-NPVNLP--WGDLGIDLVIEGTGVFVDREGA 175 (403)
Q Consensus 142 ~v~~~~-dp~~i~--w~~~gvDiV~e~tG~f~s~~~a 175 (403)
..+... ++++++ |+ +.|+||+|+..+..+...
T Consensus 105 ~~~~~~i~~~~~~~~~~--~~DiVi~~~D~~~~r~~l 139 (245)
T PRK05690 105 ETINARLDDDELAALIA--GHDLVLDCTDNVATRNQL 139 (245)
T ss_pred EEEeccCCHHHHHHHHh--cCCEEEecCCCHHHHHHH
Confidence 222111 121111 33 789999999988665533
No 225
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=69.44 E-value=6.8 Score=38.49 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=24.8
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
+||+|.|.|.+|..+...|.... .+|..++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g---~~V~~~~ 31 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG---HDVTLWA 31 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEE
Confidence 58999999999999999998764 5665554
No 226
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=68.60 E-value=8.1 Score=41.64 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=31.1
Q ss_pred cCceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHH
Q 015637 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQA 109 (403)
Q Consensus 66 ~m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~ 109 (403)
+++=+|-|.|+|++||.+.|.|.+++ .+++.|.. +++..
T Consensus 415 ~~~~hiiI~G~G~~G~~la~~L~~~g---~~vvvId~--d~~~~ 453 (558)
T PRK10669 415 DICNHALLVGYGRVGSLLGEKLLAAG---IPLVVIET--SRTRV 453 (558)
T ss_pred ccCCCEEEECCChHHHHHHHHHHHCC---CCEEEEEC--CHHHH
Confidence 45668999999999999999998875 68888874 44433
No 227
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=68.32 E-value=6.1 Score=40.87 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=26.2
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|||+|.|.|.+|..+...|.+.. ++|++++-
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G---~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG---HEVTGVDI 31 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC---CeEEEEEC
Confidence 48999999999999999998765 67777753
No 228
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=68.05 E-value=12 Score=37.64 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.4
Q ss_pred eEEEEccChhHHHHHHHHHcCC
Q 015637 70 KVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~ 91 (403)
||+|+|.|.||..++..|..++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~ 22 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALG 22 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcC
Confidence 7999999999999988887654
No 229
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=67.98 E-value=4.9 Score=38.66 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.3
Q ss_pred eeEEEEccChhHHHHHHHHHcCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
|||||+|+|++|+.+++.|....
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g 23 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSP 23 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCC
Confidence 38999999999999999998653
No 230
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=67.79 E-value=7.5 Score=43.46 Aligned_cols=153 Identities=14% Similarity=0.090 Sum_probs=76.2
Q ss_pred eeEEEEccChhHHHHHHHHH-cCCCCCceEEEEecCCChhHHhhh-------ccccceecccCcceeeecCCeEEECCEE
Q 015637 69 LKVAINGFGRIGRNFLRCWH-GRKDSPLEVVAINDTGGVKQASHL-------LKYDSTLGIFEADVKPVGTDGISVDGKV 140 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~-~~~~~~~evvaInd~~~~~~~a~l-------l~yDS~~G~f~~~v~~~~~~~l~i~G~~ 140 (403)
-||+|+|.|.+|+.+...+. ... ++|+-+.- +.+.+... +...-..|++..... ...+ ..
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G---~~V~l~d~--~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~----~~ 377 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAG---LPVRIKDI--NPQGINHALKYSWDLLDKKVKRRHLKPSER---DKQM----AL 377 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcC---CeEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHH---HHHH----hc
Confidence 37999999999999999877 443 77765542 23322221 111111122211100 0000 12
Q ss_pred EEEEecCCCCCCCCCCcCccEEeeCCCCcCCHh-----hHHHHHHcCCCeEEEcCCCC-------C--CCC---eEEeec
Q 015637 141 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDRE-----GAGKHIQAGAKKVLITAPGK-------G--DIP---TYVVGV 203 (403)
Q Consensus 141 I~v~~~~dp~~i~w~~~gvDiV~e~tG~f~s~~-----~a~~hl~aGakkVIIsaps~-------~--dvp---~vV~gV 203 (403)
|++. .+.+.+ .++|+||||...-...+ ..++++..++ ++-||.|. . ..| +-+--.
T Consensus 378 i~~~--~~~~~~----~~aDlViEav~E~~~~K~~v~~~le~~~~~~~--ilasnTS~l~i~~la~~~~~p~r~ig~Hff 449 (708)
T PRK11154 378 ISGT--TDYRGF----KHADVVIEAVFEDLALKQQMVAEVEQNCAPHT--IFASNTSSLPIGQIAAAAARPEQVIGLHYF 449 (708)
T ss_pred EEEe--CChHHh----ccCCEEeecccccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHHhcCcccceEEEecC
Confidence 3332 233333 38999999975443322 2233443444 77788763 1 123 222223
Q ss_pred CccCCCCCCCeEecCCchhhhHHHHHHHHHhhcCeeEEE
Q 015637 204 NADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGT 242 (403)
Q Consensus 204 N~~~~~~~~~IISnaSCTTn~Lap~lk~L~~~fGI~~~~ 242 (403)
|+-.+-+---||..+.++-..+.-+...+ +..|..-+.
T Consensus 450 ~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~-~~~gk~pv~ 487 (708)
T PRK11154 450 SPVEKMPLVEVIPHAKTSAETIATTVALA-KKQGKTPIV 487 (708)
T ss_pred CccccCceEEEECCCCCCHHHHHHHHHHH-HHcCCceEE
Confidence 33333222357777777666666555555 445655443
No 231
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=67.41 E-value=7.3 Score=40.64 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=27.1
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
+||+|.|.|.+|-.+...|.++. ++|++++-
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G---~~V~~~D~ 34 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ---KQVIGVDI 34 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC---CEEEEEeC
Confidence 68999999999999999998875 78887763
No 232
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=67.30 E-value=7.4 Score=38.47 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=25.5
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.||+|+|.|.+|..+.+.|.+.. ++|...|.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G---~~V~v~d~ 32 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG---HQLQVFDV 32 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC---CeEEEEcC
Confidence 38999999999999999998765 67665553
No 233
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=67.12 E-value=8.3 Score=37.86 Aligned_cols=35 Identities=14% Similarity=0.319 Sum_probs=25.9
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCC-CCceEEEEe
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAIN 101 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~-~~~evvaIn 101 (403)
|.+||+|+|+|.+|..+++.|.+.+. ...+|.+.+
T Consensus 1 ~~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~ 36 (272)
T PRK12491 1 MNKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSD 36 (272)
T ss_pred CCCeEEEECccHHHHHHHHHHHHCCCCCCceEEEEC
Confidence 56799999999999999999986531 113555444
No 234
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=67.01 E-value=8 Score=37.53 Aligned_cols=30 Identities=30% Similarity=0.373 Sum_probs=24.2
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
|||+|.|.|.+|..+...|.+.. .+|..+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g---~~V~~~~ 30 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG---HDVTLVA 30 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CeEEEEE
Confidence 48999999999999999988764 4655554
No 235
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=66.89 E-value=4.2 Score=39.30 Aligned_cols=101 Identities=13% Similarity=0.111 Sum_probs=50.5
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec-CCChhHHhhhcccc-ceecccCccee---e-ecCCeEEECCEEE
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADVK---P-VGTDGISVDGKVI 141 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd-~~~~~~~a~ll~yD-S~~G~f~~~v~---~-~~~~~l~i~G~~I 141 (403)
..||.|.|.|-+|..++..|....-+ +++-+.+ ..+...+..-+-|+ +.-|+.+..+- + .-+..+.+
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg--~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i----- 96 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVG--NLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAI----- 96 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCC--EEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEE-----
Confidence 35899999999999999999865422 2322332 23333332222222 23355443211 0 01222222
Q ss_pred EEEecC-CCCCCCCCCcCccEEeeCCCCcCCHhhH
Q 015637 142 QVVSNR-NPVNLPWGDLGIDLVIEGTGVFVDREGA 175 (403)
Q Consensus 142 ~v~~~~-dp~~i~w~~~gvDiV~e~tG~f~s~~~a 175 (403)
..+.++ +.++++=--.+.|+||+|+..+.++...
T Consensus 97 ~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~l 131 (240)
T TIGR02355 97 NPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQL 131 (240)
T ss_pred EEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHH
Confidence 222111 1111110012689999999988765544
No 236
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=66.80 E-value=19 Score=36.18 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=24.6
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-+|.|+|.|.||...++++.... ..++++..
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~G---~~vi~~~~ 212 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAMG---HHVTVISS 212 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC---CeEEEEeC
Confidence 46889999999999999887764 56666654
No 237
>PRK06444 prephenate dehydrogenase; Provisional
Probab=66.79 E-value=6.6 Score=37.03 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=21.7
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceE
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEV 97 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~ev 97 (403)
|||+|+| .|+.||.+.+.+.+.. ++|
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g---~~v 27 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNG---LGV 27 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCC---CEE
Confidence 4899999 8999999999987654 564
No 238
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=66.70 E-value=7.6 Score=38.45 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=24.4
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
|||||+|.|++|..+.+.|.+.. +++...+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G---~~v~v~~ 30 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAG---HQLHVTT 30 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC---CeEEEEe
Confidence 37999999999999999998764 6665444
No 239
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=66.69 E-value=10 Score=38.92 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=27.0
Q ss_pred ceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.+||.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G---~~V~~l~R 92 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRG---YNVVAVAR 92 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEEe
Confidence 46899999 9999999999998875 68777654
No 240
>PRK05865 hypothetical protein; Provisional
Probab=66.54 E-value=16 Score=41.92 Aligned_cols=31 Identities=29% Similarity=0.496 Sum_probs=26.1
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|||.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G---~~Vv~l~R 32 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG---HEVVGIAR 32 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc---CEEEEEEC
Confidence 4799999 9999999999998875 68777754
No 241
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=66.38 E-value=8.1 Score=38.52 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=25.9
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|||+|+|.|.+|..+...|.... .+|..++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G---~~V~~~~r 35 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKG---VPVRLWAR 35 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC---CeEEEEeC
Confidence 58999999999999999998764 67766664
No 242
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=65.97 E-value=8 Score=36.31 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=26.8
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
++|.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~---~~v~~~~r 32 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG---HEVRAAVR 32 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC---CEEEEEEe
Confidence 4789999 9999999999999885 68777765
No 243
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=65.28 E-value=23 Score=35.20 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=24.3
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
-+|.|.|.|.||...++++.... ..|+++.
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G---~~vi~~~ 197 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMG---AAVVAID 197 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEc
Confidence 37999999999999999888764 5676664
No 244
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=65.23 E-value=33 Score=34.20 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=23.8
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCce-EEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~e-vvaIn 101 (403)
-+|.|.|.|.||...++++.... .+ |+++.
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G---~~~Vi~~~ 208 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAG---ASKIIAVD 208 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 47999999999999999887664 54 66664
No 245
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=65.13 E-value=8.1 Score=38.40 Aligned_cols=32 Identities=22% Similarity=0.161 Sum_probs=24.2
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
|+|||+|+|.|.||..+.-.|.+.. .+|..+.
T Consensus 1 ~~m~I~IiGaGaiG~~~a~~L~~~G---~~V~lv~ 32 (305)
T PRK05708 1 MSMTWHILGAGSLGSLWACRLARAG---LPVRLIL 32 (305)
T ss_pred CCceEEEECCCHHHHHHHHHHHhCC---CCeEEEE
Confidence 4679999999999999988887653 3444444
No 246
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=65.07 E-value=8.7 Score=40.25 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=25.3
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
-+|+|.|+|.||+.+++.+.... .+|+++.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~G---a~ViV~d 225 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMG---ARVIVTE 225 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCc---CEEEEEe
Confidence 48999999999999999998764 6776654
No 247
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=64.80 E-value=8.2 Score=40.83 Aligned_cols=143 Identities=19% Similarity=0.254 Sum_probs=68.4
Q ss_pred eEEEEccChhHHHHHHHHHcCCC---CCceEEEEec-CCChhHHhhhcccc-ceecccCcceee----ecCCeEEECCEE
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKD---SPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADVKP----VGTDGISVDGKV 140 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~---~~~evvaInd-~~~~~~~a~ll~yD-S~~G~f~~~v~~----~~~~~l~i~G~~ 140 (403)
||.|+|.|.+|..+++.|....- +.=.|.-+.+ ..+...+..-+-|. ...|+.+..+-. .-+..+.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~----- 75 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLK----- 75 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCE-----
Confidence 68999999999999999976541 0013332332 33333333322222 223654432210 0011222
Q ss_pred EEEEecC-CCC---CCC---CCCcCccEEeeCCCCcCCHhhHHH-HHHcCCCeEEEcCCC---CCCCCeEEeecCccCCC
Q 015637 141 IQVVSNR-NPV---NLP---WGDLGIDLVIEGTGVFVDREGAGK-HIQAGAKKVLITAPG---KGDIPTYVVGVNADAYK 209 (403)
Q Consensus 141 I~v~~~~-dp~---~i~---w~~~gvDiV~e~tG~f~s~~~a~~-hl~aGakkVIIsaps---~~dvp~vV~gVN~~~~~ 209 (403)
|.....+ +++ .++ |. +.|+|++|.....++.+.-. ....+. -+|.+.. ++.+-.++|++- +.|.
T Consensus 76 I~a~~~~v~~~~~~~~~~~f~~--~~DvVi~alDn~~aR~~vn~~C~~~~i--Pli~~gt~G~~G~v~v~iP~~t-e~y~ 150 (435)
T cd01490 76 ITALQNRVGPETEHIFNDEFWE--KLDGVANALDNVDARMYVDRRCVYYRK--PLLESGTLGTKGNTQVVIPHLT-ESYS 150 (435)
T ss_pred EEEEecccChhhhhhhhHHHhc--CCCEEEECCCCHHHHHHHHHHHHHhCC--CEEEEecccceeEEEEEeCCCC-CCcc
Confidence 2222111 111 011 43 78999999988766654433 233343 4453332 234667777763 3333
Q ss_pred C--CCCeEecCCchh
Q 015637 210 P--DEPIISNASCTT 222 (403)
Q Consensus 210 ~--~~~IISnaSCTT 222 (403)
- ...--+.|+||-
T Consensus 151 ~~~~p~~~~~P~Ctl 165 (435)
T cd01490 151 SSRDPPEKSIPLCTL 165 (435)
T ss_pred CCCCCCCCCCCCccc
Confidence 1 111124566664
No 248
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=64.53 E-value=9.4 Score=37.46 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=25.5
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
||||+|.|.+|..+++.+.... ++|+..+-
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G---~~V~~~d~ 35 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAG---MDVWLLDS 35 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcC---CeEEEEeC
Confidence 7999999999999999998764 78776653
No 249
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=64.46 E-value=30 Score=35.70 Aligned_cols=84 Identities=24% Similarity=0.364 Sum_probs=48.3
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHh---hhccccceecccCcceeeecCCeEEECCEEEEEEec
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQAS---HLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a---~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~ 146 (403)
||.|.|.|.+|+.++|+|.++. .+|. +.|....+... .+++ . . .| |.++..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G---~~V~-~sD~~~~~~~~~~~~~~~--------------~-~-----~g--i~~~~g 54 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG---AEVT-VTDLKPNEELEPSMGQLR--------------L-N-----EG--SVLHTG 54 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC---CEEE-EEeCCCCccchhHHHHHh--------------h-c-----cC--cEEEec
Confidence 5889999999999999999875 5654 55531111000 0110 0 0 01 112212
Q ss_pred CCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCC
Q 015637 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (403)
Q Consensus 147 ~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGa 183 (403)
.+++.++ +.|+||=+.|.-.+.+......+.|.
T Consensus 55 ~~~~~~~----~~d~vv~sp~i~~~~p~~~~a~~~~i 87 (433)
T TIGR01087 55 LHLEDLN----NADLVVKSPGIPPDHPLVQAAAKRGI 87 (433)
T ss_pred CchHHhc----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 3344442 57999999988666555555556665
No 250
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=64.26 E-value=12 Score=33.76 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=27.0
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~ 103 (403)
+.||.|.|.|++|+..++++...+ .+++.+.+.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lG---a~v~~~d~~ 52 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLG---AEVVVPDER 52 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT----EEEEEESS
T ss_pred CeEEEEECCCHHHHHHHHHHhHCC---CEEEeccCC
Confidence 479999999999999999999886 788777653
No 251
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=64.06 E-value=19 Score=35.98 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=55.3
Q ss_pred ceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhcc-ccceecccCcceeeecCCeEEECCEEEEEEe
Q 015637 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (403)
Q Consensus 68 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~-yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~ 145 (403)
+-||-|.| +|.+|+++++.|.+.+. . ++..||-- . |+. +.| ++.+
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~-~-~v~pVnp~----------~~~~~------------------v~G--~~~y- 54 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGT-N-IVGGVTPG----------KGGTT------------------VLG--LPVF- 54 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCC-C-EEEEECCC----------CCCCe------------------EeC--eecc-
Confidence 45899999 99999999999987541 2 44456621 0 111 122 1222
Q ss_pred cCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEE
Q 015637 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (403)
Q Consensus 146 ~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVII 188 (403)
++.+++|-. .++|+++-+++.....+-.+...++|+|.+||
T Consensus 55 -~sv~dlp~~-~~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI 95 (291)
T PRK05678 55 -NTVAEAVEA-TGANASVIYVPPPFAADAILEAIDAGIDLIVC 95 (291)
T ss_pred -CCHHHHhhc-cCCCEEEEEcCHHHHHHHHHHHHHCCCCEEEE
Confidence 334444411 02899999998777777777788889988655
No 252
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=63.71 E-value=38 Score=32.18 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=24.3
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCc-eEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~-evvaIn 101 (403)
+.+-|+| +|..|+.+++.+.+.+ .| .|++|-
T Consensus 19 ~s~fvlGAtG~~G~~llk~~~E~~--~FSKV~~i~ 51 (238)
T KOG4039|consen 19 MSGFVLGATGLCGGGLLKHAQEAP--QFSKVYAIL 51 (238)
T ss_pred cceEEEeccccccHHHHHHHHhcc--cceeEEEEE
Confidence 4688999 9999999999999876 35 444443
No 253
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=63.69 E-value=8.9 Score=39.08 Aligned_cols=30 Identities=30% Similarity=0.318 Sum_probs=24.7
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
.+|||+|+|.+|+.+++.|.... ++|+..+
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG---~~Vvv~~ 47 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSG---VDVVVGL 47 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCC---CEEEEEE
Confidence 47999999999999999998764 6776444
No 254
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=63.63 E-value=67 Score=34.77 Aligned_cols=31 Identities=23% Similarity=0.124 Sum_probs=24.6
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
.-||.|.|.|.||...++.+.... -+|+++.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lG---A~V~a~D 195 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLG---AIVRAFD 195 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 469999999999999999988764 3555543
No 255
>PRK07201 short chain dehydrogenase; Provisional
Probab=63.59 E-value=47 Score=35.96 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=25.5
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|||-|-| +|.||+.+++.|.... ...+|.++..
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~-~g~~V~~l~R 34 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRR-REATVHVLVR 34 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence 4799999 9999999999998421 1267777765
No 256
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=63.57 E-value=11 Score=36.85 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=24.4
Q ss_pred eeEEEEccChhHHHHHHHHHcCC-CCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRK-DSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~-~~~~evvaIn 101 (403)
+||+|+|.|.+|+.+++.|.+.+ ....+|+..+
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~ 37 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSN 37 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEEC
Confidence 58999999999999999998753 0114555444
No 257
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=63.18 E-value=11 Score=42.09 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=24.2
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
||+|+|.|.+|+.+...+.... ++|+-+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G---~~V~l~d 343 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKG---VPVIMKD 343 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCC---CeEEEEe
Confidence 7999999999999999888764 7776554
No 258
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=62.91 E-value=9.8 Score=37.71 Aligned_cols=31 Identities=32% Similarity=0.308 Sum_probs=26.1
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
+||+|+|.|.+|..+...|..+. .+|+.++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G---~~V~v~d~ 33 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG---HEVRLWDA 33 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC---CeeEEEeC
Confidence 38999999999999999998875 67776654
No 259
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=62.78 E-value=17 Score=36.42 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=24.2
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCc-eEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~-evvaIn 101 (403)
-+|.|.|.|.||...++++.... . .|+++.
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~G---~~~vi~~~ 219 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIRG---ASRIIGVD 219 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 47999999999999999887764 5 566664
No 260
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=62.57 E-value=34 Score=35.81 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=24.6
Q ss_pred eeEEEEccChhHHH-HHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~-vlr~l~~~~~~~~evvaInd 102 (403)
.||.|.|.|..|+. ++|.|.++. .+|. +.|
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G---~~V~-~~D 38 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLG---YKVS-GSD 38 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCC---CeEE-EEC
Confidence 37999999999999 799999876 6654 455
No 261
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=62.56 E-value=7.9 Score=43.55 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=24.3
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
||+|+|.|.+|..+..++.... ++|+-+.
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G---~~V~l~d 365 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKG---LKTVLKD 365 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCC---CcEEEec
Confidence 7999999999999999888764 7876553
No 262
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=62.51 E-value=31 Score=33.37 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=24.9
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-+|-|+| .|.+|+.+++++.... .+++++..
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~G---~~vi~~~~ 176 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIKG---CKVIGCAG 176 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHcC---CEEEEEeC
Confidence 3789999 8999999999888765 67766653
No 263
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=62.37 E-value=11 Score=36.97 Aligned_cols=29 Identities=14% Similarity=0.399 Sum_probs=24.9
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
||+|+|.|.+|+.++..+..+. ++|+.++
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G---~~V~l~d 33 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTG---YDVTIVD 33 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcC---CeEEEEe
Confidence 7999999999999999998775 6777665
No 264
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=62.36 E-value=33 Score=34.36 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=23.7
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCc-eEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~-evvaIn 101 (403)
-+|.|.|.|.||..+++++.... . .|+++.
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~G---~~~Vi~~~ 216 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIAG---ASRIIGVD 216 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEe
Confidence 47999999999999998887764 5 466554
No 265
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=62.11 E-value=24 Score=35.91 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=24.6
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-+|.|.|.|.||...++++.... ..++++..
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~G---a~Vi~~~~ 210 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAFG---LRVTVISR 210 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHcC---CeEEEEeC
Confidence 36899999999999999888765 56666643
No 266
>PRK06988 putative formyltransferase; Provisional
Probab=61.40 E-value=10 Score=38.02 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=26.4
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEE
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaI 100 (403)
|+|||.+.|++.+|...|+.|.++. ++|++|
T Consensus 1 ~~mkIvf~Gs~~~a~~~L~~L~~~~---~~i~~V 31 (312)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQVLLARG---VDVALV 31 (312)
T ss_pred CCcEEEEEeCcHHHHHHHHHHHhCC---CCEEEE
Confidence 5589999999999999999998764 677666
No 267
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=61.33 E-value=11 Score=36.91 Aligned_cols=29 Identities=17% Similarity=0.382 Sum_probs=24.4
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
||+|+|.|.+|+.+...|.... ++|+.++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G---~~V~~~d 31 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSG---FQTTLVD 31 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCC---CcEEEEe
Confidence 7999999999999999998764 6766554
No 268
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=61.25 E-value=8 Score=37.46 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=20.7
Q ss_pred eeEEEEccChhHHHHHHHHHcCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
|||+|+|.|.+|..+++.|.+.+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~ 26 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSN 26 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCC
Confidence 58999999999999999998753
No 269
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=61.19 E-value=11 Score=37.00 Aligned_cols=123 Identities=16% Similarity=0.171 Sum_probs=62.0
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec--CCChhHHhhhccccceecccCcceeeecCC------eEEECCEE
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND--TGGVKQASHLLKYDSTLGIFEADVKPVGTD------GISVDGKV 140 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd--~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~------~l~i~G~~ 140 (403)
-+|.|.|-|-||--.+++|....-+++.++=-.+ +.+.+.=.|.+. ++.|+-+-++- .+. ...+....
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~--~~iGk~Kv~vm--~eri~~InP~c~V~~~~ 106 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALL--GDIGKPKVEVM--KERIKQINPECEVTAIN 106 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhh--hhcccHHHHHH--HHHHHhhCCCceEeehH
Confidence 4799999999999999999865433444432222 223332224332 34576543321 111 11121111
Q ss_pred EEEEecCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHH-cCCCeEEEcCCCCC-CCCeE
Q 015637 141 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQ-AGAKKVLITAPGKG-DIPTY 199 (403)
Q Consensus 141 I~v~~~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~-aGakkVIIsaps~~-dvp~v 199 (403)
.-+ .+.+.+++-. .+.|||+||......+-..-.+.. .+- +||-|..+.. -+|+-
T Consensus 107 ~f~-t~en~~~~~~--~~~DyvIDaiD~v~~Kv~Li~~c~~~ki-~vIss~Gag~k~DPTr 163 (263)
T COG1179 107 DFI-TEENLEDLLS--KGFDYVIDAIDSVRAKVALIAYCRRNKI-PVISSMGAGGKLDPTR 163 (263)
T ss_pred hhh-CHhHHHHHhc--CCCCEEEEchhhhHHHHHHHHHHHHcCC-CEEeeccccCCCCCce
Confidence 111 1223333322 378999999988776644433333 333 4444444321 34644
No 270
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=61.17 E-value=13 Score=41.74 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=24.6
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
||||+|.|.+|..+..++.... ++|+-+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G---~~V~l~d 343 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKG---TPIVMKD 343 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCC---CeEEEEe
Confidence 7999999999999999888765 7876554
No 271
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.99 E-value=11 Score=36.68 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=24.9
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
||+|+|.|.+|..+...+..+. .+|+.++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g---~~V~~~d 33 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAG---YDVVMVD 33 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCC---CceEEEe
Confidence 7999999999999999998775 6777665
No 272
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=60.41 E-value=12 Score=39.98 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=26.1
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
|.+||||+|.|.+|..++..+.... ++|...+
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G---~~V~v~D 34 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAG---IDVAVFD 34 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCC---CeEEEEe
Confidence 3358999999999999999998765 7776554
No 273
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=59.99 E-value=57 Score=31.87 Aligned_cols=30 Identities=20% Similarity=0.134 Sum_probs=23.2
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCce-EEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~e-vvaIn 101 (403)
-+|.|+|-|.+|+.+++++.... .. ++++.
T Consensus 167 ~~VlV~g~g~vg~~~~~la~~~g---~~~v~~~~ 197 (343)
T cd08235 167 DTVLVIGAGPIGLLHAMLAKASG---ARKVIVSD 197 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEEC
Confidence 37999999999999999887664 56 55553
No 274
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=59.98 E-value=15 Score=37.11 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=20.5
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHcCC
Q 015637 68 KLKVAINGF-GRIGRNFLRCWHGRK 91 (403)
Q Consensus 68 ~ikVaInGf-GrIGr~vlr~l~~~~ 91 (403)
++||+|.|. |.||..++-.|..++
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~ 27 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGE 27 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCC
Confidence 589999995 999999988887654
No 275
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=59.51 E-value=9.6 Score=38.18 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.6
Q ss_pred eEEEEccChhHHHHHHHHHcCC
Q 015637 70 KVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~ 91 (403)
||.|+|.|-+|-.+++.|...+
T Consensus 1 kVlVVGaGGlG~eilknLal~G 22 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSG 22 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999999999998654
No 276
>PRK07877 hypothetical protein; Provisional
Probab=59.46 E-value=5.9 Score=44.48 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=57.7
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCC-CCceEEEEec-CCChhHHhhhccccceecccCcceeeecCCeEEECC-EEEEEE
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG-KVIQVV 144 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~-~~~evvaInd-~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G-~~I~v~ 144 (403)
.-||+|+|.| +|-.++..|....- +.+-| |.. ..++..+-..+-..+..|+.+..+- ...-..+|- -.|..+
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~l--vD~D~ve~sNLnRq~~~~~diG~~Kv~~a--~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRL--ADFDTLELSNLNRVPAGVFDLGVNKAVVA--ARRIAELDPYLPVEVF 181 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEE--EcCCEEcccccccccCChhhcccHHHHHH--HHHHHHHCCCCEEEEE
Confidence 4689999999 99999998886541 22332 221 2222222222211222466543321 111111221 123333
Q ss_pred ecC-CCCCCCCCCcCccEEeeCCCCcCCHhhHHH-HHHcCCCeEEEcCCC
Q 015637 145 SNR-NPVNLPWGDLGIDLVIEGTGVFVDREGAGK-HIQAGAKKVLITAPG 192 (403)
Q Consensus 145 ~~~-dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~-hl~aGakkVIIsaps 192 (403)
.+. ++++++=--.++|+||||+..|.++-.... ..+.|. -+|++.+
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~i--P~i~~~~ 229 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRI--PVLMATS 229 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEcC
Confidence 221 233332001378999999999877655433 334444 4555443
No 277
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=59.43 E-value=7.1 Score=39.93 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.0
Q ss_pred ceeEEEEccChhHHHHHHHHHcCC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
..||.|+|.|-+|..++..|....
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~G 51 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAG 51 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC
Confidence 468999999999999999998654
No 278
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.42 E-value=50 Score=34.97 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=24.3
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
||.|.|.|..|+.++|.|..+. .+|.+ .|
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G---~~v~~-~D 37 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHG---ARLRV-AD 37 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCC---CEEEE-Ec
Confidence 7999999999999999999875 67654 44
No 279
>PRK07680 late competence protein ComER; Validated
Probab=59.02 E-value=12 Score=36.22 Aligned_cols=23 Identities=13% Similarity=0.408 Sum_probs=20.1
Q ss_pred eeEEEEccChhHHHHHHHHHcCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
|||+|+|.|.+|+.+++.|.+..
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g 23 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESG 23 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCC
Confidence 37999999999999999988653
No 280
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=58.95 E-value=66 Score=31.08 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=24.1
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
+|-|+|.|.+|+.+++++.... ..++++..
T Consensus 168 ~vli~g~g~vG~~~~~la~~~G---~~V~~~~~ 197 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAMG---AAVIAVDI 197 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHcC---CEEEEEcC
Confidence 7888899999999999888765 67766643
No 281
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=58.89 E-value=14 Score=35.02 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=25.3
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
+||.|.| +|.||+.+++.|.++. .+|+++.
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~g---~~V~~~~ 48 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAKG---FAVKAGV 48 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhCC---CEEEEEe
Confidence 5899999 9999999999998764 6776654
No 282
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=58.86 E-value=31 Score=34.72 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=23.8
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCc-eEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~-evvaIn 101 (403)
-+|.|.|.|.||...++++.... . +|+++.
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~G---~~~Vi~~~ 217 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMAK---ASRIIAID 217 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 47999999999999999887664 5 566654
No 283
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=58.79 E-value=14 Score=40.58 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=30.1
Q ss_pred cCceeEEEEc-cChhHHHHHHHHHcCCCCCceE-EEEecCCChhHH
Q 015637 66 QAKLKVAING-FGRIGRNFLRCWHGRKDSPLEV-VAINDTGGVKQA 109 (403)
Q Consensus 66 ~m~ikVaInG-fGrIGr~vlr~l~~~~~~~~ev-vaInd~~~~~~~ 109 (403)
++.|||-|-| .|.||+.+.+.|.+++ .++ ++..++.+.+.+
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g---~~v~~~~~~l~d~~~v 420 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQG---IAYEYGKGRLEDRSSL 420 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCC---CeEEeeccccccHHHH
Confidence 3467999999 9999999999998764 566 444455455443
No 284
>PLN02740 Alcohol dehydrogenase-like
Probab=58.76 E-value=20 Score=36.26 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=24.0
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCc-eEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~-evvaIn 101 (403)
-+|.|+|.|.||...++++.... . .|+++.
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~G---~~~Vi~~~ 230 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARARG---ASKIIGVD 230 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CCcEEEEc
Confidence 37999999999999999888764 5 466554
No 285
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.75 E-value=53 Score=34.16 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=50.4
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCC-hhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEe-cC
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS-NR 147 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~-~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~-~~ 147 (403)
-|+|.|.|.+|+.++|.|.++. .+|. +.|... ......| + ... -| +.+.. ..
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G---~~v~-~~D~~~~~~~~~~l--------------~-~~~-----~g--~~~~~~~~ 61 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG---IPFA-VMDSREQPPGLDTL--------------A-REF-----PD--VELRCGGF 61 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC---CeEE-EEeCCCCchhHHHH--------------H-hhc-----CC--cEEEeCCC
Confidence 4899999999999999999875 5654 455311 1110111 0 000 01 22221 23
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEc
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIs 189 (403)
+++.++ +.|+||-+.|.-.+.+......+.|. -|++
T Consensus 62 ~~~~~~----~~d~vV~sp~i~~~~p~~~~a~~~~i--~i~~ 97 (448)
T PRK03803 62 DCELLV----QASEIIISPGLALDTPALRAAAAMGI--EVIG 97 (448)
T ss_pred ChHHhc----CCCEEEECCCCCCCCHHHHHHHHCCC--cEEE
Confidence 444442 57899998888766665555566665 3453
No 286
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=58.74 E-value=13 Score=36.27 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=23.8
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
|||+|.|.|.+|..+...|.+.. .+|..+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g---~~V~~~~ 30 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG---RDVTFLV 30 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC---CceEEEe
Confidence 48999999999999999998764 4554444
No 287
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=58.72 E-value=13 Score=37.68 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=27.5
Q ss_pred ceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
++||.|-| +|-||+.+++.|.+++ .+|+++..
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G---~~V~~v~r 53 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEG---HYIIASDW 53 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCC---CEEEEEEe
Confidence 57999999 9999999999998875 68877753
No 288
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=58.71 E-value=5.1 Score=44.33 Aligned_cols=121 Identities=21% Similarity=0.213 Sum_probs=60.8
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec-CCChhHHhh--hccccce-e-cccCccee---e-ecCCeEEECC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASH--LLKYDST-L-GIFEADVK---P-VGTDGISVDG 138 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd-~~~~~~~a~--ll~yDS~-~-G~f~~~v~---~-~~~~~l~i~G 138 (403)
..||.|+|.|-+|-.+++.|..-.-+.+. -|.. ..+...+.+ |+.++.. . |+.+...- + .-+-.+.+.|
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~It--lVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~ 415 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHIT--FVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATG 415 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEE--EEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEE
Confidence 46899999999999999999865422233 2332 222222222 2222222 1 55543221 0 0122334444
Q ss_pred EEEEE------EecC-------CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCC
Q 015637 139 KVIQV------VSNR-------NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (403)
Q Consensus 139 ~~I~v------~~~~-------dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsap 191 (403)
....| +.+. |.+++.=--.+.|+||+|+..+.+| +....+..-.+|.+|++.
T Consensus 416 ~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR-~L~n~~c~~~~kplI~aA 480 (664)
T TIGR01381 416 HRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREAR-WLPTVLCSRHKKIAISAA 480 (664)
T ss_pred eeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHH-HHHHHHHHHhCCCEEEEE
Confidence 33332 1111 1111110013679999999998775 444434334456777763
No 289
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=58.55 E-value=31 Score=33.85 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=24.8
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
+|.|.|.|.+|+.+++++.... .+++++..
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~G---~~vi~~~~ 195 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKMG---FRTVAISR 195 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHCC---CeEEEEeC
Confidence 7899999999999999888775 67766654
No 290
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=58.53 E-value=14 Score=36.41 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=25.1
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
.||+|+|.|.+|..+...|.... ++|+.++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g---~~V~~~d 34 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG---LQVVLID 34 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC---CeEEEEE
Confidence 38999999999999999998764 6776665
No 291
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=58.46 E-value=46 Score=33.40 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=23.7
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCc-eEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~-evvaIn 101 (403)
-+|.|+|.|.||...++++.... . .|+++.
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~G---~~~vi~~~ 218 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAAG---ASRIIGID 218 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEe
Confidence 47999999999999999887764 5 465554
No 292
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.44 E-value=36 Score=35.94 Aligned_cols=86 Identities=20% Similarity=0.251 Sum_probs=48.8
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~d 148 (403)
-||+|.|+|+-|+..+|.|..+. .+++ +.|.-+........ ..+ ++ + +.++...+
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g---~~v~-~~d~~~~~~~~~~~-----------~l~--~~------~--~~~~~~~~ 63 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHL---PAQA-LTLFCNAVEAREVG-----------ALA--DA------A--LLVETEAS 63 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcC---CEEE-EEcCCCcccchHHH-----------HHh--hc------C--EEEeCCCC
Confidence 38999999999999999999875 5644 45531110000000 001 01 1 11112223
Q ss_pred CCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCC
Q 015637 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (403)
Q Consensus 149 p~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGa 183 (403)
++.+. +.|+||-+.|.-.+.+......+.|.
T Consensus 64 ~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~~i 94 (468)
T PRK04690 64 AQRLA----AFDVVVKSPGISPYRPEALAAAARGT 94 (468)
T ss_pred hHHcc----CCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 33332 57999999988777665655666665
No 293
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=58.05 E-value=31 Score=34.68 Aligned_cols=121 Identities=21% Similarity=0.256 Sum_probs=62.2
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecC-C-ChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDT-G-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~-~-~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~ 145 (403)
-.|||+| +|-||-.+.|.|..+. +..+++. .|. . +-.-+ .+++ +.. +. |+....
T Consensus 168 atvaivGa~G~Ia~~Iar~la~~~-~~~~ll~-r~aea~~rq~l-~~l~--e~~-----------~~-----~~i~s~-- 224 (351)
T COG5322 168 ATVAIVGATGDIASAIARWLAPKV-GVKELLL-RDAEARNRQRL-TLLQ--EEL-----------GR-----GKIMSL-- 224 (351)
T ss_pred CeEEEecCCchHHHHHHHHhcccc-CEEEEec-ccHHhhhhhhh-hhcc--ccc-----------CC-----Ceeeec--
Confidence 5799999 9999999999988664 2344432 111 0 01111 1111 000 11 111111
Q ss_pred cCCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCchh
Q 015637 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTT 222 (403)
Q Consensus 146 ~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps~~dvp~vV~gVN~~~~~~~~~IISnaSCTT 222 (403)
|. ..+ .-|++|..+..-...+-.+.|++-|| +|+++.-..|+.+.|-.+|.=.+- ...+|+.++-.|
T Consensus 225 --d~-~~~----~e~i~v~vAs~~~g~~I~pq~lkpg~--~ivD~g~P~dvd~~vk~~~~V~Ii-~GGlV~~s~~it 291 (351)
T COG5322 225 --DY-ALP----QEDILVWVASMPKGVEIFPQHLKPGC--LIVDGGYPKDVDTSVKNVGGVRII-PGGLVEHSLDIT 291 (351)
T ss_pred --cc-ccc----ccceEEEEeecCCCceechhhccCCe--EEEcCCcCcccccccccCCCeEEe-cCccccCccccc
Confidence 11 111 34555554433333445688999999 999987533555666666533221 245666555443
No 294
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.04 E-value=41 Score=35.30 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=24.1
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
||+|.|+|+.|+.+++.|..+. .+|. +.|
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G---~~V~-~~D 44 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLG---AKVT-AFD 44 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCC---CEEE-EEC
Confidence 8999999999999999998875 5654 455
No 295
>PLN02427 UDP-apiose/xylose synthase
Probab=57.77 E-value=17 Score=36.87 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=27.3
Q ss_pred ceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
++||.|-| +|.||+.+++.|.++. ..+|+++..
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~--g~~V~~l~r 47 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTET--PHKVLALDV 47 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcC--CCEEEEEec
Confidence 35899999 9999999999998863 268888864
No 296
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=57.77 E-value=14 Score=37.34 Aligned_cols=31 Identities=26% Similarity=0.246 Sum_probs=24.7
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.||||+|+|.+|+.+++.|.... ++++...+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG---~~Viv~~~ 34 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSG---LNVIVGLR 34 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCC---CeEEEEEC
Confidence 47999999999999999998764 66654443
No 297
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=57.25 E-value=14 Score=38.71 Aligned_cols=32 Identities=28% Similarity=0.596 Sum_probs=27.7
Q ss_pred ceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.|||-|-| +|-||+.+++.|.++. .+|+++..
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G---~~V~~ldr 152 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRG---DEVIVIDN 152 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 46899999 9999999999999875 68888864
No 298
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=57.22 E-value=61 Score=31.87 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=23.0
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
-+|.|.|.|.+|+.+++++.... ..++.+.
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~G---~~v~~~~ 200 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKALG---AEVTAFS 200 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CeEEEEc
Confidence 36888889999999988887664 5665554
No 299
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=57.13 E-value=42 Score=37.99 Aligned_cols=30 Identities=23% Similarity=0.174 Sum_probs=24.3
Q ss_pred eEEEEccChhHHHH-HHHHHcCCCCCceEEEEecC
Q 015637 70 KVAINGFGRIGRNF-LRCWHGRKDSPLEVVAINDT 103 (403)
Q Consensus 70 kVaInGfGrIGr~v-lr~l~~~~~~~~evvaInd~ 103 (403)
+|.|.|.|..|+.. ++.|.++. .+|. +.|.
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G---~~V~-~sD~ 36 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRG---YSVS-GSDL 36 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCC---CeEE-EECC
Confidence 59999999999998 88988875 6654 5664
No 300
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=56.85 E-value=13 Score=38.48 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=29.1
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhcc
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK 114 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~ 114 (403)
|||+|.|.|.+|..+..++.. . ++|++++- +.+.+..+.+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G---~~VigvD~--d~~kv~~l~~ 40 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-N---HEVVALDI--LPSRVAMLND 40 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-C---CcEEEEEC--CHHHHHHHHc
Confidence 489999999999999976653 3 78888873 4555544443
No 301
>PRK08655 prephenate dehydrogenase; Provisional
Probab=56.85 E-value=15 Score=38.71 Aligned_cols=30 Identities=30% Similarity=0.582 Sum_probs=24.5
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
|||+|+| +|.+|+.+.+.|.+.. .+|..++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G---~~V~v~~ 31 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG---FEVIVTG 31 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC---CEEEEEE
Confidence 4899998 9999999999998764 5666554
No 302
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=56.75 E-value=1.2e+02 Score=28.58 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=24.0
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
||.|+|-|.+|..-++.|.+.+ -.|+.|..
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~g---a~VtVvsp 40 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAG---AQLRVIAE 40 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCC---CEEEEEcC
Confidence 8999999999999999998865 35554543
No 303
>PRK05442 malate dehydrogenase; Provisional
Probab=56.05 E-value=18 Score=36.62 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=19.1
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHcC
Q 015637 68 KLKVAINGF-GRIGRNFLRCWHGR 90 (403)
Q Consensus 68 ~ikVaInGf-GrIGr~vlr~l~~~ 90 (403)
+.||+|.|. |.||..++-.|..+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~ 27 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASG 27 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhh
Confidence 469999995 99999998877653
No 304
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=55.93 E-value=16 Score=35.78 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=26.1
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|||.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~~ 32 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVVILDN 32 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC---CeEEEEec
Confidence 4799999 9999999999998875 68877753
No 305
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=55.76 E-value=6.7 Score=36.32 Aligned_cols=42 Identities=36% Similarity=0.538 Sum_probs=25.9
Q ss_pred CCccccccccc-ccccCCCcccccccccccCCCCCCCCCCCcc
Q 015637 1 MASATLSVAKS-ALQGNGKGFSEFSGLRNSASLPFGRKSSDDF 42 (403)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (403)
||+.+++.+.+ +..+...-.+-|+|||+.+..|..|+...++
T Consensus 1 Mas~~~~s~~~~~~~~qas~vapf~gLKs~~~fp~~~k~~~~~ 43 (176)
T PLN02289 1 MASSMLSSAAVATSPAQATMVAPFTGLKSSAAFPVTRKANNDI 43 (176)
T ss_pred CcchhhhcccccccccccccccccccccccccCcceeeccccc
Confidence 67665544332 1111124678999999998888777754333
No 306
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.65 E-value=61 Score=34.25 Aligned_cols=82 Identities=21% Similarity=0.268 Sum_probs=47.7
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEec-CC
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN-RN 148 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~-~d 148 (403)
||.|.|+|..|+.+++.|.... .+|. +.|. .......++. . .| ++++.. .+
T Consensus 17 ~v~v~G~G~sG~a~a~~L~~~G---~~V~-~~D~-~~~~~~~~l~----------------~-----~g--i~~~~~~~~ 68 (473)
T PRK00141 17 RVLVAGAGVSGRGIAAMLSELG---CDVV-VADD-NETARHKLIE----------------V-----TG--VADISTAEA 68 (473)
T ss_pred eEEEEccCHHHHHHHHHHHHCC---CEEE-EECC-ChHHHHHHHH----------------h-----cC--cEEEeCCCc
Confidence 7999999999999999998775 5554 4442 2211111110 0 01 112212 12
Q ss_pred CCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCC
Q 015637 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (403)
Q Consensus 149 p~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGa 183 (403)
++.++ +.|+||-+.|.--+........+.|.
T Consensus 69 ~~~~~----~~d~vV~Spgi~~~~p~~~~a~~~gi 99 (473)
T PRK00141 69 SDQLD----SFSLVVTSPGWRPDSPLLVDAQSQGL 99 (473)
T ss_pred hhHhc----CCCEEEeCCCCCCCCHHHHHHHHCCC
Confidence 33332 57899998888766655555556665
No 307
>PRK08618 ornithine cyclodeaminase; Validated
Probab=55.52 E-value=25 Score=35.32 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=23.9
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-+|+|.|.|.+||..++++.... .++-+.|-+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~--~~~~v~v~~ 159 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVR--DIERVRVYS 159 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcC--CccEEEEEC
Confidence 47999999999999998876432 255555654
No 308
>PRK06545 prephenate dehydrogenase; Validated
Probab=55.35 E-value=14 Score=37.55 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.0
Q ss_pred eEEEEccChhHHHHHHHHHcCC
Q 015637 70 KVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~ 91 (403)
||+|+|+|.||..+.+.|....
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G 23 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAG 23 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcC
Confidence 6999999999999999998764
No 309
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=55.28 E-value=55 Score=32.47 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=24.1
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCc-eEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~-evvaIn 101 (403)
-+|.|.|.|.||+.+++++.... . .++++.
T Consensus 179 ~~vlI~g~g~vG~~~~~lak~~G---~~~v~~~~ 209 (361)
T cd08231 179 DTVVVQGAGPLGLYAVAAAKLAG---ARRVIVID 209 (361)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 37899999999999999888764 6 666664
No 310
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=55.24 E-value=40 Score=33.57 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=21.4
Q ss_pred eEEEEccChhHHHHHHHHHc-CCCCCceEEEEe
Q 015637 70 KVAINGFGRIGRNFLRCWHG-RKDSPLEVVAIN 101 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~-~~~~~~evvaIn 101 (403)
+|.|.|.|.||...++++.. .. ...|+++.
T Consensus 166 ~VlV~G~G~vGl~~~~~a~~~~g--~~~vi~~~ 196 (341)
T cd08237 166 VIGVWGDGNLGYITALLLKQIYP--ESKLVVFG 196 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhcC--CCcEEEEe
Confidence 79999999999988887653 22 13555554
No 311
>PLN02206 UDP-glucuronate decarboxylase
Probab=55.17 E-value=16 Score=38.50 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=27.5
Q ss_pred ceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.+||-|-| +|-||+.+++.|.++. .+|+++..
T Consensus 119 ~~kILVTGatGfIGs~Lv~~Ll~~G---~~V~~ld~ 151 (442)
T PLN02206 119 GLRVVVTGGAGFVGSHLVDRLMARG---DSVIVVDN 151 (442)
T ss_pred CCEEEEECcccHHHHHHHHHHHHCc---CEEEEEeC
Confidence 37899999 9999999999999875 68887754
No 312
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=55.12 E-value=19 Score=35.28 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=25.3
Q ss_pred eeEEEEccChhHHHHHHHHHcCCC-CCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~-~~~evvaInd 102 (403)
+||+|+|.|.+|+.+++.|.+... ...+|+.++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 589999999999999999886531 1146666654
No 313
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=54.78 E-value=20 Score=35.71 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=26.9
Q ss_pred ceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.+||-|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G---~~V~~~~r 42 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRG---YTVHATLR 42 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 35899999 9999999999999875 68877654
No 314
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.54 E-value=19 Score=35.30 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=25.1
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
.||+|+|.|.+|..+...|.... ++|+..+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G---~~V~l~d 34 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG---YDVLLND 34 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CeEEEEe
Confidence 47999999999999999998764 6776554
No 315
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=54.36 E-value=30 Score=33.08 Aligned_cols=31 Identities=35% Similarity=0.395 Sum_probs=24.6
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCce-EEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~e-vvaInd 102 (403)
-+|.|+|.|.+|+.+++++.... ++ ++++..
T Consensus 131 ~~vlI~g~g~vg~~~~~la~~~g---~~~v~~~~~ 162 (312)
T cd08269 131 KTVAVIGAGFIGLLFLQLAAAAG---ARRVIAIDR 162 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEECC
Confidence 37899999999999999888764 66 665543
No 316
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=54.29 E-value=67 Score=35.99 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=74.0
Q ss_pred eeEEEEccChhHHHHHHHHHc-CCCCCceEEEEecCCChhHHhhhccc-------cceecccCcceeeecCCeEEECCEE
Q 015637 69 LKVAINGFGRIGRNFLRCWHG-RKDSPLEVVAINDTGGVKQASHLLKY-------DSTLGIFEADVKPVGTDGISVDGKV 140 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~-~~~~~~evvaInd~~~~~~~a~ll~y-------DS~~G~f~~~v~~~~~~~l~i~G~~ 140 (403)
-||+|+|.|.+|+.+...+.. .. ++|+-+ |. +.+.+...+++ .-..|++..... +..+ ..
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G---~~V~l~-d~-~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~----~~ 372 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAG---IPVRIK-DI-NPQGINNALKYAWKLLDKGVKRRHMTPAER---DNQM----AL 372 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcC---CeEEEE-eC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHH---HHHH----cC
Confidence 379999999999999987763 43 676544 32 33332222211 000122111100 0000 12
Q ss_pred EEEEecCCCCCCCCCCcCccEEeeCCCCcCCHh-----hHHHHHHcCCCeEEEcCCCC-------C--CCC---eEEeec
Q 015637 141 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDRE-----GAGKHIQAGAKKVLITAPGK-------G--DIP---TYVVGV 203 (403)
Q Consensus 141 I~v~~~~dp~~i~w~~~gvDiV~e~tG~f~s~~-----~a~~hl~aGakkVIIsaps~-------~--dvp---~vV~gV 203 (403)
|+.. .+.+.+ .++|+||||...-...+ ..+.++...+ ++-||.|. . ..| +..--.
T Consensus 373 i~~~--~~~~~~----~~adlViEav~E~l~~K~~v~~~l~~~~~~~~--ilasnTS~l~i~~la~~~~~p~r~~g~Hff 444 (699)
T TIGR02440 373 ITGT--TDYRGF----KDVDIVIEAVFEDLALKHQMVKDIEQECAAHT--IFASNTSSLPIGQIAAAASRPENVIGLHYF 444 (699)
T ss_pred eEEe--CChHHh----ccCCEEEEeccccHHHHHHHHHHHHhhCCCCc--EEEeCCCCCCHHHHHHhcCCcccEEEEecC
Confidence 3332 333333 38999999975444322 1223333334 67787763 1 123 222233
Q ss_pred CccCCCCCCCeEecCCchhhhHHHHHHHHHhhcCeeEEE
Q 015637 204 NADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGT 242 (403)
Q Consensus 204 N~~~~~~~~~IISnaSCTTn~Lap~lk~L~~~fGI~~~~ 242 (403)
|+-.+-+---||..+.++--.+.-+... -+..|-.-+.
T Consensus 445 nP~~~~~lVEvv~g~~T~~~~~~~~~~~-~~~~gk~pv~ 482 (699)
T TIGR02440 445 SPVEKMPLVEVIPHAGTSEQTIATTVAL-AKKQGKTPIV 482 (699)
T ss_pred CccccCceEEEeCCCCCCHHHHHHHHHH-HHHcCCeEEE
Confidence 4443332235777777665555555544 4446654443
No 317
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=54.19 E-value=19 Score=35.80 Aligned_cols=32 Identities=28% Similarity=0.274 Sum_probs=26.4
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
+||.|-| +|.||+.+++.|.++. ..+|++++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~--~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETT--DWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCC--CCeEEEEeC
Confidence 4899999 8999999999998652 268888863
No 318
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=54.03 E-value=18 Score=37.35 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=27.1
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
+.+|-|.|+|++|+.+++.|.++. .+++.|..
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~---~~v~vid~ 262 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEG---YSVKLIER 262 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CeEEEEEC
Confidence 468999999999999999998864 68877764
No 319
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.00 E-value=69 Score=33.15 Aligned_cols=105 Identities=19% Similarity=0.278 Sum_probs=58.1
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~d 148 (403)
.+|.|.|.|..|+..++.|..+. .+|.+ .|....... . +.+. .|-.+.. ...+
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G---~~v~~-~D~~~~~~~----------------~-----~~l~-~g~~~~~-~~~~ 59 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARG---VTPRV-IDTRITPPG----------------L-----DKLP-ENVERHT-GSLN 59 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC---CeEEE-EcCCCCchh----------------H-----HHHh-cCCEEEe-CCCC
Confidence 37999999999999999888765 56554 442110000 0 0010 0111111 1122
Q ss_pred CCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCC---C-CCCCeE-EeecCcc
Q 015637 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG---K-GDIPTY-VVGVNAD 206 (403)
Q Consensus 149 p~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps---~-~dvp~v-V~gVN~~ 206 (403)
+..+. +.|+||-+.|.-.+.+....+.+.|+. |++-+. . -+.|+| |-|-|.+
T Consensus 60 ~~~~~----~~d~vv~spgi~~~~~~~~~a~~~g~~--v~~~~el~~~~~~~~~I~VTGTnGK 116 (438)
T PRK03806 60 DEWLL----AADLIVASPGIALAHPSLSAAADAGIE--IVGDIELFCREAQAPIVAITGSNGK 116 (438)
T ss_pred HHHhc----CCCEEEECCCCCCCCHHHHHHHHCCCe--EEEHHHHHhhhcCCCEEEEeCCCCH
Confidence 22221 468999998887777777777888884 554321 1 123433 5566654
No 320
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=53.58 E-value=25 Score=34.39 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.3
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCC
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRK 91 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~ 91 (403)
|||-|-| .|.||+.+.+.|.++.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g 24 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG 24 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC
Confidence 4799999 9999999999998763
No 321
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=53.54 E-value=78 Score=31.57 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=23.4
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCce-EEEEe
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIN 101 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~e-vvaIn 101 (403)
+|.|+|.|.+|+.+++++.... .. ++++.
T Consensus 190 ~VlI~g~g~vG~~~~~lak~~G---~~~vi~~~ 219 (367)
T cd08263 190 TVAVIGVGGVGSSAIQLAKAFG---ASPIIAVD 219 (367)
T ss_pred EEEEECCcHHHHHHHHHHHHcC---CCeEEEEe
Confidence 6889999999999999988764 55 55554
No 322
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=53.30 E-value=7.4 Score=40.15 Aligned_cols=110 Identities=19% Similarity=0.214 Sum_probs=55.0
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec-CCChhHHhhhcccc-ceecccCccee---e-ecCCeEEECCEEE
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADVK---P-VGTDGISVDGKVI 141 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd-~~~~~~~a~ll~yD-S~~G~f~~~v~---~-~~~~~l~i~G~~I 141 (403)
..||.|.|.|-+|..++..|....-+ ++.-+++ ..++..+..-+-|+ +..|+.+...- + .-+..+.+....-
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg--~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVG--TITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 46899999999999999999865422 3333443 23333333322222 22244332210 0 0012222221111
Q ss_pred EEEecCCCCCCCCCCcCccEEeeCCCCcCCHhhHHH-HHHcCC
Q 015637 142 QVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGK-HIQAGA 183 (403)
Q Consensus 142 ~v~~~~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~-hl~aGa 183 (403)
.+ +++++.---.++|+||+|+..+.++..... ..+.|.
T Consensus 119 ~i----~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~i 157 (370)
T PRK05600 119 RL----TAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGT 157 (370)
T ss_pred ec----CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 22 121211011378999999999887654433 334454
No 323
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=53.19 E-value=13 Score=37.92 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=27.7
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec-CCChhHH
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQA 109 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd-~~~~~~~ 109 (403)
..||.|+|.|.+|..++..|....-+ +|.-|.+ ..+...+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~Ve~sNL 64 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVG--KVTIVDRDYVEWSNL 64 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCccCHHHc
Confidence 46899999999999999999876421 4444553 3344433
No 324
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=53.12 E-value=19 Score=36.44 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=24.7
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
||||+|.|.+|+.+...+.... ++|+..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG---~~V~l~D 37 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHG---LDVVAWD 37 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCC---CeEEEEe
Confidence 7999999999999999888765 7876554
No 325
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=52.83 E-value=37 Score=33.38 Aligned_cols=30 Identities=17% Similarity=0.060 Sum_probs=24.1
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
-+|.|+| .|.||+.+++++..+. .+++++.
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G---~~Vi~~~ 183 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKG---CYVVGSA 183 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcC---CEEEEEe
Confidence 3799999 6999999999888765 6766554
No 326
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=52.78 E-value=60 Score=32.06 Aligned_cols=30 Identities=33% Similarity=0.398 Sum_probs=23.3
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCce-EEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~e-vvaIn 101 (403)
-+|.|+|.|.+|+..++++.... .+ |+++.
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~G---~~~v~~~~ 192 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVALG---AKSVTAID 192 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEC
Confidence 37999999999999999887764 55 44443
No 327
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=52.69 E-value=69 Score=30.17 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=23.8
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCce-EEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~e-vvaIn 101 (403)
-+|.|+|.|.+|+.+++++.... .. ++++.
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~g---~~~vi~~~ 129 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAAG---AREVVGVD 129 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCcEEEEC
Confidence 36899999999999999887764 55 66664
No 328
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=52.30 E-value=64 Score=31.86 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=23.5
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCc-eEEEEe
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~-evvaIn 101 (403)
+|.|+|.|.+|+..++++.... . .|+++.
T Consensus 175 ~vlI~g~g~vG~~a~q~a~~~G---~~~v~~~~ 204 (351)
T cd08233 175 TALVLGAGPIGLLTILALKAAG---ASKIIVSE 204 (351)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCEEEEEC
Confidence 7899999999999999988765 5 555553
No 329
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.23 E-value=21 Score=34.98 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=24.5
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
.||+|+|.|.+|..+...+.... .+|..++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G---~~V~l~d 33 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG---FDVTIYD 33 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC---CeEEEEe
Confidence 48999999999999999988764 5665554
No 330
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=52.21 E-value=22 Score=35.23 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=32.7
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhcccc
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYD 116 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yD 116 (403)
|+++.+|.||.|..+.+-|.++. .++|+-. .+++....+..|.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g---hdvV~yD--~n~~av~~~~~~g 43 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG---HDVVGYD--VNQTAVEELKDEG 43 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC---CeEEEEc--CCHHHHHHHHhcC
Confidence 47999999999999999999875 6887664 3555555665544
No 331
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=52.12 E-value=18 Score=42.28 Aligned_cols=129 Identities=14% Similarity=0.162 Sum_probs=64.2
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCC-----CCceEEEEec-CCChhHHhhhccccc-eecccCcceee----ecCCeEEE
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKD-----SPLEVVAIND-TGGVKQASHLLKYDS-TLGIFEADVKP----VGTDGISV 136 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~-----~~~evvaInd-~~~~~~~a~ll~yDS-~~G~f~~~v~~----~~~~~l~i 136 (403)
..||.|+|.|.+|..+++.|....- + .|.-+.. ..+...+-.-|-|.. .-|+.+..+-. .-+..+.+
T Consensus 419 ~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G--~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~~~Np~v~I 496 (1008)
T TIGR01408 419 NLNIFLVGCGAIGCEMLKNFALMGVGTGKKG--MITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQIKI 496 (1008)
T ss_pred hCcEEEECCChHHHHHHHHHHHhCCCcCCCC--eEEEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHHHHCCCCEE
Confidence 4689999999999999999875431 1 3332332 233333333222221 13655443210 01222222
Q ss_pred CCEEEEEEecCCCCC-C--C-CCCcCccEEeeCCCCcCCHhhHH-HHHHcCCCeEEEcCCC---CCCCCeEEeecC
Q 015637 137 DGKVIQVVSNRNPVN-L--P-WGDLGIDLVIEGTGVFVDREGAG-KHIQAGAKKVLITAPG---KGDIPTYVVGVN 204 (403)
Q Consensus 137 ~G~~I~v~~~~dp~~-i--~-w~~~gvDiV~e~tG~f~s~~~a~-~hl~aGakkVIIsaps---~~dvp~vV~gVN 204 (403)
.-..-.+.. +.++ + + |. +.|+|++|+..+.++.+.- ...+.+. .+|.+.. ++.+-+++|++-
T Consensus 497 ~~~~~~v~~--~~e~i~~~~f~~--~~dvVi~alDn~~aR~~vn~~c~~~~i--Pli~~gt~G~~G~v~v~ip~~t 566 (1008)
T TIGR01408 497 DAHQNRVGP--ETETIFNDEFYE--KLDVVINALDNVEARRYVDSRCLAFLK--PLLESGTLGTKGNTQVVVPHLT 566 (1008)
T ss_pred EEEEeecCh--hhhhhhhHHHhh--CCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEeccCceeeEEEEeCCCc
Confidence 111111110 0111 1 1 43 7899999999876665443 2333443 5554433 235667777753
No 332
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=52.03 E-value=62 Score=31.56 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=24.5
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-+|.|+| .|.||+..++++.... .+++++..
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~G---~~Vi~~~~ 171 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLKG---CKVVGAAG 171 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHcC---CEEEEEeC
Confidence 3799999 7999999999887764 57766543
No 333
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=52.00 E-value=83 Score=30.71 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=22.7
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
=+|.|+|.|.+|+.+++++.... .+++.+.
T Consensus 163 ~~VlI~g~g~vg~~~~~la~~~G---~~~v~~~ 192 (341)
T cd08262 163 EVALVIGCGPIGLAVIAALKARG---VGPIVAS 192 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEE
Confidence 37899999999999998887764 5543343
No 334
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.82 E-value=57 Score=33.74 Aligned_cols=88 Identities=25% Similarity=0.353 Sum_probs=49.9
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCC-h--hHHhhhccccceecccCcceeeecCCeEEECCEEEEEEec
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG-V--KQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~-~--~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~ 146 (403)
+|.|.|.|++|+..++.|.++. .+|+ +.|... . .....|- ..+- .+...
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G---~~V~-~~d~~~~~~~~~~~~l~---------------~~g~---------~~~~~ 58 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLG---ANVT-VNDGKPFSENPEAQELL---------------EEGI---------KVICG 58 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCC---CEEE-EEcCCCccchhHHHHHH---------------hcCC---------EEEeC
Confidence 6899999999999999999875 5655 444211 0 1111110 0111 11111
Q ss_pred CCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEc
Q 015637 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (403)
Q Consensus 147 ~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIs 189 (403)
.++.++. ..+.|+||-+.|.-.+........+.|. .|++
T Consensus 59 ~~~~~~~--~~~~d~vV~s~gi~~~~~~~~~a~~~~i--~v~~ 97 (447)
T PRK02472 59 SHPLELL--DEDFDLMVKNPGIPYTNPMVEKALEKGI--PIIT 97 (447)
T ss_pred CCCHHHh--cCcCCEEEECCCCCCCCHHHHHHHHCCC--cEEe
Confidence 2232221 1147999999998777666666666666 4443
No 335
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=51.80 E-value=67 Score=32.14 Aligned_cols=30 Identities=17% Similarity=0.024 Sum_probs=23.9
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
-+|.|+| .|.||+..++++..+. .+++++.
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~G---~~Vi~~~ 190 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLHG---CYVVGSA 190 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHcC---CEEEEEc
Confidence 3799999 5999999999887765 6776654
No 336
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=51.12 E-value=17 Score=36.70 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.5
Q ss_pred eEEEEccChhHHHHHHHHHcCC
Q 015637 70 KVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~ 91 (403)
||.|+|.|-+|-.+++.|....
T Consensus 1 kVlIVGaGGlG~EiaKnLal~G 22 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTG 22 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhc
Confidence 6899999999999999998654
No 337
>PLN02827 Alcohol dehydrogenase-like
Probab=51.05 E-value=70 Score=32.46 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=22.7
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCce-EEEE
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAI 100 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~e-vvaI 100 (403)
-+|.|.|.|.||..+++++.... .. ++++
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~G---~~~vi~~ 224 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLRG---ASQIIGV 224 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEE
Confidence 47899999999999999887664 53 5544
No 338
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.66 E-value=60 Score=33.61 Aligned_cols=93 Identities=23% Similarity=0.254 Sum_probs=52.6
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~d 148 (403)
.+|.|.|-|++|..+++.|.++. .+|+.+ |....+.+...++ ..+ ..+ +.++....
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G---~~V~~~-d~~~~~~~~~~~~----------~l~-~~~---------~~~~~~~~ 61 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLG---AKVILT-DEKEEDQLKEALE----------ELG-ELG---------IELVLGEY 61 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE-eCCchHHHHHHHH----------HHH-hcC---------CEEEeCCc
Confidence 58999999999999999999876 576544 3222111111110 000 001 11211121
Q ss_pred CCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcC
Q 015637 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (403)
Q Consensus 149 p~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsa 190 (403)
+..+ ..+.|+||-++|.....+......+.|. .|++-
T Consensus 62 ~~~~---~~~~d~vv~~~g~~~~~~~~~~a~~~~i--~~~~~ 98 (450)
T PRK14106 62 PEEF---LEGVDLVVVSPGVPLDSPPVVQAHKKGI--EVIGE 98 (450)
T ss_pred chhH---hhcCCEEEECCCCCCCCHHHHHHHHCCC--cEEeH
Confidence 2211 1258999999998877776666666665 44443
No 339
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=50.58 E-value=23 Score=35.38 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=20.5
Q ss_pred eeEEEEccChhHHHHHHHHHcCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
|||+|+|.|.||..++..|..++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g 23 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRG 23 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC
Confidence 48999999999999999988764
No 340
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=50.53 E-value=71 Score=30.97 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=24.5
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-+|.|.|.|.+|+.+++++.... ++|.++..
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~G---~~v~~~~~ 194 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAMG---FETVAITR 194 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 37899998889999999888765 67766654
No 341
>PLN02240 UDP-glucose 4-epimerase
Probab=50.43 E-value=24 Score=34.82 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=26.9
Q ss_pred ceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
..||.|.| +|.||+.+++.|.++. .+|+++..
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g---~~V~~~~~ 37 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAG---YKVVVIDN 37 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeC
Confidence 35899999 9999999999998875 68887753
No 342
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=50.24 E-value=21 Score=34.51 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=26.0
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
++|.|.| .|.||+.+++.|.+++ .+|+++..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g---~~V~~~~r 32 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG---EEVRVLVR 32 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC---CEEEEEEe
Confidence 3789999 8999999999998875 67777764
No 343
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=50.23 E-value=22 Score=36.55 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=25.2
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
-||.|.|+|++|+..++.+.... .+|++++
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lG---a~V~v~d 197 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLG---ATVTILD 197 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCC---CeEEEEE
Confidence 47999999999999999998765 5766665
No 344
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=50.20 E-value=59 Score=31.76 Aligned_cols=29 Identities=24% Similarity=0.186 Sum_probs=24.1
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCc-eEEEE
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAI 100 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~-evvaI 100 (403)
=+|.|+|.|.+|+.+++++..+. + .++++
T Consensus 169 ~~vlI~g~g~vg~~~~~~a~~~g---~~~v~~~ 198 (344)
T cd08284 169 DTVAVIGCGPVGLCAVLSAQVLG---AARVFAV 198 (344)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CceEEEE
Confidence 37899999999999999988775 5 56666
No 345
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=50.20 E-value=21 Score=34.09 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=24.2
Q ss_pred eEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 70 kVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
||.|.| +|.||+.+++.|.++. .+|+++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g---~~v~~~~ 30 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG---RVVVALT 30 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC---CEEEEeC
Confidence 588999 9999999999998864 5776664
No 346
>PRK06153 hypothetical protein; Provisional
Probab=50.11 E-value=11 Score=39.26 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=24.5
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
..||+|+|.|-+|-.++..|..-+- -+|+-|.
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GV--geI~LVD 207 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPV--REIHLFD 207 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCC--CEEEEEC
Confidence 3589999999999999999987642 2544454
No 347
>PRK07411 hypothetical protein; Validated
Probab=49.90 E-value=12 Score=38.92 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=20.8
Q ss_pred ceeEEEEccChhHHHHHHHHHcCC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
..||.|+|.|-+|-.++..|..-.
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~G 61 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAG 61 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcC
Confidence 468999999999999999997653
No 348
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=49.79 E-value=18 Score=33.78 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=21.0
Q ss_pred ceeEEEEccChhHHHHHHHHHcCC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
..||.|.|.|-+|..+++.|....
T Consensus 21 ~s~VlIiG~gglG~evak~La~~G 44 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSG 44 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcC
Confidence 458999999999999999998654
No 349
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=49.66 E-value=68 Score=30.79 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=22.9
Q ss_pred eEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 70 kVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
+|.|+| .|.+|+.+++++.... .+|+++.
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~ 178 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLG---YTVVALT 178 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcC---CEEEEEe
Confidence 699999 6999999999887765 5655444
No 350
>PLN02572 UDP-sulfoquinovose synthase
Probab=49.54 E-value=29 Score=36.35 Aligned_cols=32 Identities=28% Similarity=0.276 Sum_probs=26.9
Q ss_pred ceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.+||-|-| +|.||+.+++.|.+++ .+|+++..
T Consensus 47 ~k~VLVTGatGfIGs~Lv~~L~~~G---~~V~~~d~ 79 (442)
T PLN02572 47 KKKVMVIGGDGYCGWATALHLSKRG---YEVAIVDN 79 (442)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CeEEEEec
Confidence 35899999 9999999999999875 68877653
No 351
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=49.36 E-value=29 Score=36.90 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.7
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHcC
Q 015637 68 KLKVAINGF-GRIGRNFLRCWHGR 90 (403)
Q Consensus 68 ~ikVaInGf-GrIGr~vlr~l~~~ 90 (403)
++||+|.|. |.||-.++-.|..+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 689999997 99999999988765
No 352
>PRK09291 short chain dehydrogenase; Provisional
Probab=49.27 E-value=27 Score=32.54 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=26.3
Q ss_pred CceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 67 m~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|..+|-|.| +|.||+.+++.|.++. ..|+++..
T Consensus 1 m~~~vlVtGasg~iG~~ia~~l~~~G---~~v~~~~r 34 (257)
T PRK09291 1 MSKTILITGAGSGFGREVALRLARKG---HNVIAGVQ 34 (257)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 334789999 9999999999998875 67776653
No 353
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=49.25 E-value=20 Score=38.30 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=26.4
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.+|||+|.|..|..+.+.|.++. ++|.+.|-
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G---~~V~v~dr 32 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG---FKISVYNR 32 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC---CeEEEEeC
Confidence 48999999999999999999875 78776663
No 354
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=49.13 E-value=59 Score=31.90 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=19.9
Q ss_pred EEc-cChhHHHHHHHHHcCCCCCceEEEE
Q 015637 73 ING-FGRIGRNFLRCWHGRKDSPLEVVAI 100 (403)
Q Consensus 73 InG-fGrIGr~vlr~l~~~~~~~~evvaI 100 (403)
|-| .|.||+.+++.|.++.+ ..+|.++
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~-~~~Vr~~ 29 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGY-IYEVRVL 29 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCC-ceEEEEc
Confidence 567 99999999999998752 2454433
No 355
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=49.09 E-value=39 Score=33.86 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=23.2
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCce-EEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~e-vvaIn 101 (403)
-+|.|+|.|.+|+.+++++.... .+ ++++.
T Consensus 188 ~~vlI~g~g~vG~~~~~la~~~G---~~~v~~~~ 218 (365)
T cd08278 188 SSIAVFGAGAVGLAAVMAAKIAG---CTTIIAVD 218 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEe
Confidence 37999999999999998887765 53 55554
No 356
>PRK10083 putative oxidoreductase; Provisional
Probab=48.74 E-value=58 Score=31.82 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=17.8
Q ss_pred eEEEEccChhHHHHHHHHHc
Q 015637 70 KVAINGFGRIGRNFLRCWHG 89 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~ 89 (403)
+|.|+|-|.+|+.+++++..
T Consensus 163 ~vlI~g~g~vG~~~~~~a~~ 182 (339)
T PRK10083 163 VALIYGAGPVGLTIVQVLKG 182 (339)
T ss_pred EEEEECCCHHHHHHHHHHHH
Confidence 79999999999999888764
No 357
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=48.57 E-value=31 Score=27.45 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=20.1
Q ss_pred eeEEEEccChhHHHHHHHHHcC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGR 90 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~ 90 (403)
.+++|.|+|.+|+.+++.|.+.
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~ 45 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADE 45 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4799999999999999999876
No 358
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=48.41 E-value=35 Score=31.07 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=24.7
Q ss_pred EEEEc-cChhHHHHHHHHHcCCCCCceEEEEecC
Q 015637 71 VAING-FGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (403)
Q Consensus 71 VaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~ 103 (403)
|-|.| +|.||+.+++.|.++. .+++++...
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g---~~v~~~~~~ 31 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG---HEVIVLSRS 31 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---TEEEEEESC
T ss_pred EEEEccCCHHHHHHHHHHHHcC---Ccccccccc
Confidence 67899 9999999999999886 566666653
No 359
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=48.27 E-value=25 Score=35.15 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=27.1
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
+||-|-| +|-||+.+++.|.++. .+|+++..
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g---~~V~~~d~ 47 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLN---QTVIGLDN 47 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 5899999 9999999999999875 68888864
No 360
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=48.22 E-value=32 Score=35.91 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.8
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHcCC
Q 015637 68 KLKVAINGF-GRIGRNFLRCWHGRK 91 (403)
Q Consensus 68 ~ikVaInGf-GrIGr~vlr~l~~~~ 91 (403)
++||+|.|. |+||-.++-.|..++
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~ 68 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGE 68 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcc
Confidence 589999996 999999999887653
No 361
>PRK08328 hypothetical protein; Provisional
Probab=48.05 E-value=17 Score=34.80 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.0
Q ss_pred ceeEEEEccChhHHHHHHHHHcCC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
.-||.|.|.|-+|..++..|....
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~G 50 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAG 50 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC
Confidence 458999999999999999998654
No 362
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=47.64 E-value=72 Score=30.78 Aligned_cols=30 Identities=20% Similarity=0.134 Sum_probs=24.2
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
-+|.|+| .|.+|+.+++++.... ..++++.
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~G---~~vi~~~ 177 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLLG---ARVVGIA 177 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHcC---CEEEEEe
Confidence 3789999 8999999999888764 6776664
No 363
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=47.54 E-value=37 Score=33.55 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=21.8
Q ss_pred EEEEccChhHHHHHHHHHcCCCCCc-eEEEEe
Q 015637 71 VAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (403)
Q Consensus 71 VaInGfGrIGr~vlr~l~~~~~~~~-evvaIn 101 (403)
|+|.|.|.+|..+..++..+. + +|+-+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~---l~eV~L~D 29 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKE---LGDVVLLD 29 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCC---CcEEEEEe
Confidence 689999999999988887654 3 765553
No 364
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=47.24 E-value=44 Score=32.81 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=24.9
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
+|.|+|.|.+|+.+++++.... +.++++..
T Consensus 168 ~vlV~g~g~vg~~~~~~a~~~G---~~vi~~~~ 197 (345)
T cd08260 168 WVAVHGCGGVGLSAVMIASALG---ARVIAVDI 197 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CeEEEEeC
Confidence 7999999999999999888764 77776654
No 365
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.23 E-value=1.1e+02 Score=31.71 Aligned_cols=91 Identities=18% Similarity=0.242 Sum_probs=51.2
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~d 148 (403)
.+|.|.|.|.+|+..+|.|.++. ..|++...-..++....| + .. ..| +.++....
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g---~~v~~~d~~~~~~~~~~l--------------~---~~---~~g--i~~~~g~~ 60 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNG---AEVAAYDAELKPERVAQI--------------G---KM---FDG--LVFYTGRL 60 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCCCCchhHHHH--------------h---hc---cCC--cEEEeCCC
Confidence 47999999999999999999876 676544321111100011 0 00 011 12221121
Q ss_pred CCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEc
Q 015637 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (403)
Q Consensus 149 p~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIs 189 (403)
+..+ + .+.|+||-+.|.-.+.+......+.|. -|++
T Consensus 61 ~~~~-~--~~~d~vv~spgi~~~~p~~~~a~~~~i--~v~~ 96 (445)
T PRK04308 61 KDAL-D--NGFDILALSPGISERQPDIEAFKQNGG--RVLG 96 (445)
T ss_pred CHHH-H--hCCCEEEECCCCCCCCHHHHHHHHcCC--cEEE
Confidence 2111 1 267999999998876666666666665 4453
No 366
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=47.07 E-value=35 Score=34.52 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=19.6
Q ss_pred eeEEEEcc-ChhHHHHHHHHHcCC
Q 015637 69 LKVAINGF-GRIGRNFLRCWHGRK 91 (403)
Q Consensus 69 ikVaInGf-GrIGr~vlr~l~~~~ 91 (403)
.||+|.|. |.||..++..|..++
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~ 24 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGE 24 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC
Confidence 48999995 999999999887653
No 367
>PRK08017 oxidoreductase; Provisional
Probab=46.81 E-value=31 Score=32.07 Aligned_cols=31 Identities=26% Similarity=0.175 Sum_probs=25.0
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-+|.|.| .|.||+.+++.|.+++ .+|+++..
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g---~~v~~~~r 34 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG---YRVLAACR 34 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CEEEEEeC
Confidence 3699999 7999999999998774 57766643
No 368
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=46.42 E-value=18 Score=33.83 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.8
Q ss_pred ceeEEEEccChhHHHHHHHHHcCC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
..||.|.|.|-+|..+++.|....
T Consensus 19 ~s~VlviG~gglGsevak~L~~~G 42 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAG 42 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcC
Confidence 458999999999999999998654
No 369
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=46.31 E-value=42 Score=34.15 Aligned_cols=247 Identities=16% Similarity=0.118 Sum_probs=120.2
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCC--ChhHHhhhccccceeccc-CcceeeecCCeEEECCEEEEEE
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTG--GVKQASHLLKYDSTLGIF-EADVKPVGTDGISVDGKVIQVV 144 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~--~~~~~a~ll~yDS~~G~f-~~~v~~~~~~~l~i~G~~I~v~ 144 (403)
++|-|-| .|-||-..++.|.+.. .++|.+..+. ..+.+.... ++| .+++. +...| -.+
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G---~~vvV~DNL~~g~~~~v~~~~------~~f~~gDi~--D~~~L------~~v- 62 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTG---HEVVVLDNLSNGHKIALLKLQ------FKFYEGDLL--DRALL------TAV- 62 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCC---CeEEEEecCCCCCHHHhhhcc------CceEEeccc--cHHHH------HHH-
Confidence 4788999 9999999999999875 7888887752 222221110 111 11111 00000 011
Q ss_pred ecCCCCCCCCCCcCccEEeeCCCCcC------------------CHhhHHHHHHcCCCeEEEcCCCCC-CCCeEEeecCc
Q 015637 145 SNRNPVNLPWGDLGIDLVIEGTGVFV------------------DREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNA 205 (403)
Q Consensus 145 ~~~dp~~i~w~~~gvDiV~e~tG~f~------------------s~~~a~~hl~aGakkVIIsaps~~-dvp~vV~gVN~ 205 (403)
+.+..+|-||..+|.-. +....+.-.+.|.+++|+|.+.+- ..|.-+| |.+
T Consensus 63 ---------f~~~~idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~P-I~E 132 (329)
T COG1087 63 ---------FEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSP-ISE 132 (329)
T ss_pred ---------HHhcCCCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcc-cCC
Confidence 22234555554443221 223455666789999999866531 1232222 221
Q ss_pred cCCCCCCCeEecCCchhh-hHHHHHHHHHhhcCeeEEEEeeeeccccchhhhhhchhhhhhhHhhhcccCCCCCChHHHH
Q 015637 206 DAYKPDEPIISNASCTTN-CLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV 284 (403)
Q Consensus 206 ~~~~~~~~IISnaSCTTn-~Lap~lk~L~~~fGI~~~~~TTiha~tg~q~~~D~~~~d~r~~r~~a~NIIP~~tGaakav 284 (403)
+.- .. -.||=--|- ..=-+|+-++..+|++-+. --|-.+.|+- ++..-..+... ..|+||...-+ ++
T Consensus 133 ~~~---~~-p~NPYG~sKlm~E~iL~d~~~a~~~~~v~-LRYFN~aGA~----~~G~iGe~~~~-~thLip~~~q~--A~ 200 (329)
T COG1087 133 TSP---LA-PINPYGRSKLMSEEILRDAAKANPFKVVI-LRYFNVAGAC----PDGTLGQRYPG-ATLLIPVAAEA--AL 200 (329)
T ss_pred CCC---CC-CCCcchhHHHHHHHHHHHHHHhCCCcEEE-EEecccccCC----CCCccCCCCCC-cchHHHHHHHH--Hh
Confidence 110 00 122222222 2334677788888855443 3344444432 11111111122 37888864221 12
Q ss_pred HHhccccC------CceeEEEEe--cccc---------------cccEEEEEEEEccCCCHHHHHHHHHhcccccCcCcc
Q 015637 285 ALVLPALK------GKLNGIALR--VPTP---------------NVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGIL 341 (403)
Q Consensus 285 ~kVlPeL~------gkl~~~avR--VPv~---------------~gs~~dl~v~~~k~~s~eeI~~al~~aa~~~lkgil 341 (403)
++ .|.|. ..-+|||+| +=|. .+....+++-..+-.|+-|+.+++++....++. .
T Consensus 201 G~-r~~l~ifG~DY~T~DGT~iRDYIHV~DLA~aH~~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip--~ 277 (329)
T COG1087 201 GK-RDKLFIFGDDYDTKDGTCIRDYIHVDDLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIP--V 277 (329)
T ss_pred cC-CceeEEeCCCCCCCCCCeeeeeeehhHHHHHHHHHHHHHHhCCceeEEEccCCCceeHHHHHHHHHHHhCCcCc--e
Confidence 22 12111 124567777 1111 233345566666778899999999988754432 1
Q ss_pred cccCCCceeecCCCCCcceeeeC
Q 015637 342 SVCDEPLVSVDFRCSDVSSTVDS 364 (403)
Q Consensus 342 ~~~~~p~VS~D~~~~~~s~i~d~ 364 (403)
.+.++. -||+-.++-|+
T Consensus 278 ~~~~RR------~GDpa~l~Ad~ 294 (329)
T COG1087 278 EIAPRR------AGDPAILVADS 294 (329)
T ss_pred eeCCCC------CCCCceeEeCH
Confidence 122222 46776666554
No 370
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=46.14 E-value=32 Score=36.28 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=25.2
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-||-|+|.|-+|+.+++.|.+++- -.|.-+|.
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~--~~i~IaNR 210 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGV--KKITIANR 210 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC--CEEEEEcC
Confidence 479999999999999999998752 34444564
No 371
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=46.05 E-value=1.1e+02 Score=29.69 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=23.0
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCc-eEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~-evvaIn 101 (403)
-+|.|+|.|.+|+.+++++.... + .++++.
T Consensus 167 ~~VLI~g~g~vG~~~~~lak~~G---~~~v~~~~ 197 (339)
T cd08232 167 KRVLVTGAGPIGALVVAAARRAG---AAEIVATD 197 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEEC
Confidence 37889999999999999887764 5 555553
No 372
>PRK07326 short chain dehydrogenase; Provisional
Probab=45.96 E-value=30 Score=31.76 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=25.7
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.+|-|.| +|.||+.+++.|.++. .+|+++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g---~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEG---YKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCC---CEEEEeeC
Confidence 5799999 9999999999998874 67776653
No 373
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=45.95 E-value=53 Score=31.58 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=25.3
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-+|.|+| .|.||+.+++++.... ..++++.+
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~G---~~v~~~~~ 172 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAARG---INVINLVR 172 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHCC---CeEEEEec
Confidence 4799999 7999999999888775 67766655
No 374
>PRK08223 hypothetical protein; Validated
Probab=45.86 E-value=26 Score=35.11 Aligned_cols=98 Identities=19% Similarity=0.149 Sum_probs=48.6
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec-CCChhHHhhhcccc-ceecccCcceeeecCCeEEECC-EEEEEE
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADVKPVGTDGISVDG-KVIQVV 144 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd-~~~~~~~a~ll~yD-S~~G~f~~~v~~~~~~~l~i~G-~~I~v~ 144 (403)
.-||.|+|.|-+|-.++..|..-.-+.+.+ |.+ ..+...+-.-+-|+ +..|+.+.++- ...-..+|- -+|..+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~l--vD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a--~~~l~~iNP~v~V~~~ 102 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTI--ADFDVFELRNFNRQAGAMMSTLGRPKAEVL--AEMVRDINPELEIRAF 102 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEE--EeCCCcchhccccccCcChhHCCCcHHHHH--HHHHHHHCCCCEEEEE
Confidence 358999999999999999888654222332 332 33443333222222 23466543321 111111221 122222
Q ss_pred ec-CCCCCCCCCCcCccEEeeCCCCc
Q 015637 145 SN-RNPVNLPWGDLGIDLVIEGTGVF 169 (403)
Q Consensus 145 ~~-~dp~~i~w~~~gvDiV~e~tG~f 169 (403)
.+ -++++.+.--.+.|+|+||+..|
T Consensus 103 ~~~l~~~n~~~ll~~~DlVvD~~D~~ 128 (287)
T PRK08223 103 PEGIGKENADAFLDGVDVYVDGLDFF 128 (287)
T ss_pred ecccCccCHHHHHhCCCEEEECCCCC
Confidence 21 12323211113789999999876
No 375
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=45.86 E-value=30 Score=34.36 Aligned_cols=31 Identities=32% Similarity=0.413 Sum_probs=23.9
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
||+|.|.|.+|+.++..|..++- .-+|+-++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~-~~ei~l~D 32 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGI-ADELVLID 32 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 89999999999999999987641 01555554
No 376
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=45.72 E-value=1.1e+02 Score=31.23 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=22.2
Q ss_pred eEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 70 kVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
+|.|+| .|.||...++++.....+--.|+++.
T Consensus 178 ~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~ 210 (410)
T cd08238 178 NTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTD 210 (410)
T ss_pred EEEEEeCCCHHHHHHHHHHHhcccCCceEEEEc
Confidence 799998 89999999888765420112565553
No 377
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=45.43 E-value=21 Score=35.07 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=22.3
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEE
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAI 100 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaI 100 (403)
|||-|.| ||- ||.+++.|.+++ .+|++-
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g---~~v~~s 29 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG---IEILVT 29 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC---CeEEEE
Confidence 4788999 998 999999998764 676544
No 378
>smart00833 CobW_C Cobalamin synthesis protein cobW C-terminal domain. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis PUBMED:12869542. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression PUBMED:7765511.
Probab=45.21 E-value=32 Score=27.24 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=38.8
Q ss_pred EEEEEEEccCCCHHHHHHHHHhcccc--cCcCcccccCCC--ceeecCCCCCcc
Q 015637 310 VDLVVQVSKKTFAEEVNAAFRESADN--ELKGILSVCDEP--LVSVDFRCSDVS 359 (403)
Q Consensus 310 ~dl~v~~~k~~s~eeI~~al~~aa~~--~lkgil~~~~~p--~VS~D~~~~~~s 359 (403)
..++++...+.+.+++.+.|++-+.+ .+||++...+++ .+..++.++.++
T Consensus 2 ~s~~~~~~~~~~~~~l~~~l~~l~~~i~R~KG~v~~~~~~~~~~~~q~v~~~~~ 55 (92)
T smart00833 2 SSFVYRARRPFHPQRLLAALDELPEGVLRAKGFFWLASRPDLPGVLSGAGGRLR 55 (92)
T ss_pred EEEEEecCCCCCHHHHHHHHHhccCCeEEEEEEEEeCCCCCeEEEEEccCCeeE
Confidence 35677888999999999999887644 689999988774 456677776544
No 379
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.13 E-value=28 Score=36.05 Aligned_cols=86 Identities=17% Similarity=0.325 Sum_probs=51.1
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~d 148 (403)
-||.|+|.|.+|+.+++.|.++. .+|++..+. ++. +.+ .+. .. .. . ..+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G---~~V~g~D~~--~~~---~~~----~~~----~~---~~----------~--~~~ 52 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKG---VYVIGVDKS--LEA---LQS----CPY----IH---ER----------Y--LEN 52 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCC---CEEEEEeCC--ccc---cch----hHH----Hh---hh----------h--cCC
Confidence 37999999999999999998875 566555431 110 000 000 00 00 0 011
Q ss_pred CCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcC
Q 015637 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (403)
Q Consensus 149 p~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsa 190 (403)
++.++ .+.|+||-+.|.--..+..+..+++|++ +++.
T Consensus 53 ~~~~~---~~~dlvV~s~gi~~~~~~l~~A~~~g~~--vv~~ 89 (418)
T PRK00683 53 AEEFP---EQVDLVVRSPGIKKEHPWVQAAIASHIP--VVTD 89 (418)
T ss_pred cHHHh---cCCCEEEECCCCCCCcHHHHHHHHCCCc--EEEH
Confidence 22221 1468888888887667778888888884 5543
No 380
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=45.06 E-value=44 Score=34.52 Aligned_cols=88 Identities=23% Similarity=0.207 Sum_probs=48.3
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEE-EEEecC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVI-QVVSNR 147 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I-~v~~~~ 147 (403)
-.|+|.|.|-||-..+.-+..-.. =.|+||.- .++.+....++--|| .+|.++. .+.+
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA--~~IiAvD~--~~~Kl~~A~~fGAT~---------------~vn~~~~~~vv~-- 245 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGA--GRIIAVDI--NPEKLELAKKFGATH---------------FVNPKEVDDVVE-- 245 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCC--ceEEEEeC--CHHHHHHHHhcCCce---------------eecchhhhhHHH--
Confidence 369999999999888877664322 46777753 233333333333322 1333322 1110
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHH
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHI 179 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl 179 (403)
...++ | +.|+|++|||+|.-...+.+-...
T Consensus 246 ~i~~~-T-~gG~d~~~e~~G~~~~~~~al~~~ 275 (366)
T COG1062 246 AIVEL-T-DGGADYAFECVGNVEVMRQALEAT 275 (366)
T ss_pred HHHHh-c-CCCCCEEEEccCCHHHHHHHHHHH
Confidence 01111 2 238999999999876555444333
No 381
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=44.75 E-value=26 Score=36.07 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=23.5
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
|||.+.|.|.+||.++..++.+. ..+|+.|.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~--g~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN--GFEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC--CCeEEEEE
Confidence 58999999999997766555543 27887776
No 382
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=44.70 E-value=24 Score=37.63 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=25.8
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
+|||+|+|++|+.+++.|.++. ++|.+.|.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G---~~V~v~dr 30 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG---FTVSVYNR 30 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC---CeEEEEeC
Confidence 4899999999999999998875 78776664
No 383
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=44.38 E-value=63 Score=31.59 Aligned_cols=31 Identities=23% Similarity=0.211 Sum_probs=24.1
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCce-EEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~e-vvaInd 102 (403)
-+|.|+|.|.+|+.+++++.... .. ++++..
T Consensus 161 ~~vlI~g~g~~g~~~~~lA~~~G---~~~v~~~~~ 192 (343)
T cd08236 161 DTVVVIGAGTIGLLAIQWLKILG---AKRVIAVDI 192 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEEcC
Confidence 37999999999999999887764 55 655643
No 384
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.36 E-value=1.2e+02 Score=22.81 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=39.4
Q ss_pred cCCCCCChHHHHHHhccccCCceeEEEEecccccccEEEEEEEEccCCCHHHHHHHHHh
Q 015637 273 IVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRE 331 (403)
Q Consensus 273 IIP~~tGaakav~kVlPeL~gkl~~~avRVPv~~gs~~dl~v~~~k~~s~eeI~~al~~ 331 (403)
.||...|+-+.+..+|.+ +..|+-...|-.-.....+.+.+++..+-..+++.+.|++
T Consensus 4 ~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 4 TFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred ECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 367777876666667766 6678877777666555556677777765566667776665
No 385
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=44.14 E-value=57 Score=31.64 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=22.9
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCce-EEEEe
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIN 101 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~e-vvaIn 101 (403)
+|.|+|.|.+|+.+++++.... +. ++++.
T Consensus 162 ~vlI~g~g~vg~~~~~la~~~G---~~~v~~~~ 191 (334)
T cd08234 162 SVLVFGAGPIGLLLAQLLKLNG---ASRVTVAE 191 (334)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CcEEEEEC
Confidence 7899999999999999888764 55 44443
No 386
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=43.87 E-value=37 Score=29.37 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=23.1
Q ss_pred EEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 71 VAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 71 VaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|+|.|.|.||..+...|.+.. .+|..+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g---~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG---HDVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT---CEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCC---CceEEEEc
Confidence 789999999999999997754 56655654
No 387
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=43.81 E-value=37 Score=29.53 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=25.6
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-||.|+|.|-+||.++..|..+.- =+|.-+|.
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~--~~i~i~nR 44 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGA--KEITIVNR 44 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTS--SEEEEEES
T ss_pred CEEEEECCHHHHHHHHHHHHHcCC--CEEEEEEC
Confidence 489999999999999999998752 23555775
No 388
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=43.26 E-value=48 Score=25.73 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=24.0
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
||.|+|-|.+|-.++..|.+.. .++.-|..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g---~~vtli~~ 30 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG---KEVTLIER 30 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT---SEEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHhC---cEEEEEec
Confidence 6899999999999999998875 45544543
No 389
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=43.16 E-value=28 Score=36.54 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=25.2
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|||||.|+|.+|.-+...|.+ . ++|++++-
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~---~~V~g~D~ 36 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-S---RQVVGFDV 36 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-C---CEEEEEeC
Confidence 589999999999999998765 2 78888764
No 390
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=43.14 E-value=1.2e+02 Score=31.23 Aligned_cols=31 Identities=26% Similarity=0.206 Sum_probs=23.3
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-+|.|.|.|.||+..++++.... ..++.+.+
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~G---a~~vi~~d 217 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLLG---AAVVIVGD 217 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CceEEEeC
Confidence 36889899999999999887664 55444444
No 391
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=42.87 E-value=31 Score=32.96 Aligned_cols=31 Identities=29% Similarity=0.587 Sum_probs=24.6
Q ss_pred eEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 70 kVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
||.|-| +|.||+.+++.|.+++ +..+|++++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~-~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEH-PDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhC-CCCEEEEec
Confidence 588999 9999999999998753 236777665
No 392
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=42.86 E-value=82 Score=30.79 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=22.5
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCce-EEEEe
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIN 101 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~e-vvaIn 101 (403)
+|.|.|-|.+|+.+++++.... .. ++++.
T Consensus 171 ~vlI~g~g~vg~~~~~lak~~G---~~~v~~~~ 200 (345)
T cd08287 171 TVVVVGDGAVGLCAVLAAKRLG---AERIIAMS 200 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCEEEEEC
Confidence 6888899999999998887764 54 55554
No 393
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=42.77 E-value=32 Score=35.92 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=24.8
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCc-eEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~-evvaInd 102 (403)
.+|+|.|+|.+|+.+++.|...+ + +|+.+|.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G---~~~V~v~~r 214 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKG---VRKITVANR 214 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCC---CCeEEEEeC
Confidence 58999999999999999998764 4 5555554
No 394
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.55 E-value=1.3e+02 Score=31.39 Aligned_cols=84 Identities=20% Similarity=0.266 Sum_probs=49.7
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCC-hhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEec-
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN- 146 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~-~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~- 146 (403)
.||.|.|.|..|+..++.|..+. +..+|. +.|... +... +.|.- | ++++..
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~-~~~~v~-~~D~~~~~~~~----------------------~~l~~-g--~~~~~g~ 60 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQ-PQLTVK-VIDTRETPPGQ----------------------EQLPE-D--VELHSGG 60 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcC-CCCeEE-EEeCCCCchhH----------------------HHhhc-C--CEEEeCC
Confidence 37999999999999999998763 125654 455311 1000 00100 1 222212
Q ss_pred CCCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCC
Q 015637 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (403)
Q Consensus 147 ~dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGa 183 (403)
.+++.++ +.|+||-+.|.-.+.+......++|.
T Consensus 61 ~~~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi 93 (438)
T PRK04663 61 WNLEWLL----EADLVVTNPGIALATPEIQQVLAAGI 93 (438)
T ss_pred CChHHhc----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 3455442 57999999998776666666666665
No 395
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=42.48 E-value=35 Score=34.06 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=24.3
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
+||+|.|.|.+|..++.++..+.. .+|+-+.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~--~~VvlvD 32 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKEL--ADLVLLD 32 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCC--CeEEEEe
Confidence 589999999999999999887641 2655454
No 396
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=42.32 E-value=56 Score=32.00 Aligned_cols=31 Identities=19% Similarity=0.087 Sum_probs=24.3
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCc-eEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPL-EVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~-evvaInd 102 (403)
-+|.|+| .|.||+..++++.... . +|+++..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G---~~~Vi~~~~ 188 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLG---CSRVVGICG 188 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC---CCEEEEEcC
Confidence 3799999 6999999999887664 5 6766643
No 397
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.15 E-value=85 Score=31.25 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=18.6
Q ss_pred eeEEEEccCh-hHHHHHHHHHcCC
Q 015637 69 LKVAINGFGR-IGRNFLRCWHGRK 91 (403)
Q Consensus 69 ikVaInGfGr-IGr~vlr~l~~~~ 91 (403)
-+|.|.|.|. +||-+..+|.++.
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~g 183 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNAN 183 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCC
Confidence 4799999776 9999988887664
No 398
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=42.15 E-value=40 Score=29.16 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=20.2
Q ss_pred eeEEEEccChhHHHHHHHHHcC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGR 90 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~ 90 (403)
.+|+|.|.|.+|+.+++.|...
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~ 41 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAEL 41 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHC
Confidence 5899999999999999999876
No 399
>PRK14851 hypothetical protein; Provisional
Probab=41.91 E-value=11 Score=42.09 Aligned_cols=98 Identities=19% Similarity=0.171 Sum_probs=49.7
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec-CCChhHHhhhccc-cceecccCcceeeecCCeEEEC-CEEEEEE
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKY-DSTLGIFEADVKPVGTDGISVD-GKVIQVV 144 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd-~~~~~~~a~ll~y-DS~~G~f~~~v~~~~~~~l~i~-G~~I~v~ 144 (403)
.-||+|+|.|-+|-.++..|....-+.+.| |.. ..++..+-.-+-| .+..|+.+..+- ...-..+| +-+|..+
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GVG~l~L--vD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~--~~~l~~inP~~~I~~~ 118 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGIGRFHI--ADFDQFEPVNVNRQFGARVPSFGRPKLAVM--KEQALSINPFLEITPF 118 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCCCeEEE--EcCCEecccccccCcCcChhhCCCHHHHHH--HHHHHHhCCCCeEEEE
Confidence 358999999999999999987654222332 321 2233222221212 233466544321 11111122 1234444
Q ss_pred ecC-CCCCCCCCCcCccEEeeCCCCc
Q 015637 145 SNR-NPVNLPWGDLGIDLVIEGTGVF 169 (403)
Q Consensus 145 ~~~-dp~~i~w~~~gvDiV~e~tG~f 169 (403)
.+. ++++++.--.++|+||+|+..|
T Consensus 119 ~~~i~~~n~~~~l~~~DvVid~~D~~ 144 (679)
T PRK14851 119 PAGINADNMDAFLDGVDVVLDGLDFF 144 (679)
T ss_pred ecCCChHHHHHHHhCCCEEEECCCCC
Confidence 322 2333321113799999999875
No 400
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=41.88 E-value=37 Score=33.62 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=25.7
Q ss_pred eeEEEEccChhHHHHHHHHHcCC-CCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRK-DSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~-~~~~evvaInd 102 (403)
+||++.|+|.+|+.+++-|.+.+ -+..+|...|.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~ 36 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR 36 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC
Confidence 58999999999999999998764 12245554443
No 401
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=41.76 E-value=1.8e+02 Score=28.41 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=24.5
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
+|.|+|.|.+|+.+++++.... .+++++..
T Consensus 162 ~vLI~g~g~vG~~a~~lA~~~g---~~v~~~~~ 191 (337)
T cd08261 162 TVLVVGAGPIGLGVIQVAKARG---ARVIVVDI 191 (337)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CeEEEECC
Confidence 7889999999999999988764 67766643
No 402
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=41.44 E-value=40 Score=31.48 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=24.8
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
|+|-|.| .|.||+.+++.|.++. .+|+.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G---~~V~~~~ 31 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG---HKVIATG 31 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC---CEEEEEE
Confidence 4789999 9999999999998875 5776554
No 403
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=41.35 E-value=19 Score=37.35 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.0
Q ss_pred ceeEEEEccChhHHHHHHHHHcCC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
..||.|+|.|-+|-.++..|....
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~G 65 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAG 65 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcC
Confidence 468999999999999999998654
No 404
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=41.29 E-value=66 Score=34.86 Aligned_cols=30 Identities=23% Similarity=0.163 Sum_probs=23.9
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
-||.|.|.|++|+..++.+.... -.|+++.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lG---A~V~v~d 194 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLG---AIVRAFD 194 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 59999999999999999988764 3454443
No 405
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=41.25 E-value=2.1e+02 Score=28.80 Aligned_cols=30 Identities=23% Similarity=0.188 Sum_probs=24.0
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
-+|.|.| .|.||+.+++++.... ++++++.
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~G---~~vv~~~ 225 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAAG---ANPVAVV 225 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC---CeEEEEe
Confidence 3799999 6999999998887765 6766664
No 406
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=41.06 E-value=1.3e+02 Score=29.90 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=18.3
Q ss_pred EEEEccChhHHHHHHHHHcCC
Q 015637 71 VAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 71 VaInGfGrIGr~vlr~l~~~~ 91 (403)
|+|+|.|.||..++-.|...+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~ 21 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKG 21 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcC
Confidence 689999999999998887764
No 407
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=40.98 E-value=81 Score=30.38 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=24.5
Q ss_pred eEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 70 kVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
+|.|+| .|.+|+.+++++..+. ..++++..
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~~ 179 (326)
T cd08289 149 PVLVTGATGGVGSLAVSILAKLG---YEVVASTG 179 (326)
T ss_pred EEEEEcCCchHHHHHHHHHHHCC---CeEEEEec
Confidence 789999 5999999999888775 67766654
No 408
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=40.97 E-value=90 Score=29.95 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=24.5
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
-+|.|+| .|.+|+.+++.+.... ..++++.
T Consensus 164 ~~vlI~ga~g~vG~~~~~~a~~~g---~~v~~~~ 194 (332)
T cd08259 164 DTVLVTGAGGGVGIHAIQLAKALG---ARVIAVT 194 (332)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC---CeEEEEe
Confidence 3799999 8999999999998775 6766554
No 409
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=40.81 E-value=37 Score=35.43 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=25.2
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-+|+|.|+|.+|+.+++.|...+ -.+|+.+|.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G--~~~V~v~~r 212 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKG--VGKILIANR 212 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCC--CCEEEEEeC
Confidence 58999999999999999998764 135655654
No 410
>PLN00198 anthocyanidin reductase; Provisional
Probab=40.72 E-value=39 Score=33.32 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=25.6
Q ss_pred ceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 68 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
+.+|.|-| +|-||+.+++.|.++. .+|+++.
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g---~~V~~~~ 40 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKG---YAVNTTV 40 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCC---CEEEEEE
Confidence 46899999 9999999999999875 5775553
No 411
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=40.70 E-value=41 Score=33.99 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=24.9
Q ss_pred ceeEEEEc-cChhHHHHHHHHHcCCC----CCceEEEEe
Q 015637 68 KLKVAING-FGRIGRNFLRCWHGRKD----SPLEVVAIN 101 (403)
Q Consensus 68 ~ikVaInG-fGrIGr~vlr~l~~~~~----~~~evvaIn 101 (403)
++||+|.| .|.||..++..|..++- ...+|+.+.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D 40 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLD 40 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEE
Confidence 47999999 59999999999887531 113666553
No 412
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=40.55 E-value=1.5e+02 Score=28.70 Aligned_cols=31 Identities=6% Similarity=0.023 Sum_probs=24.7
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-+|.|.| .|.+|+.+++++.... .+++++..
T Consensus 142 ~~vlI~g~~g~ig~~~~~lak~~G---~~v~~~~~ 173 (327)
T PRK10754 142 EQFLFHAAAGGVGLIACQWAKALG---AKLIGTVG 173 (327)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHcC---CEEEEEeC
Confidence 3789997 9999999998887765 67766653
No 413
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=40.30 E-value=1.4e+02 Score=29.42 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=22.9
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCce-EEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~e-vvaIn 101 (403)
-+|.|+|.|.||+.+++++.... .. ++++.
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~G---~~~v~~~~ 198 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLRG---AGRIIAVG 198 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEe
Confidence 47999999999999998887664 43 54443
No 414
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=40.28 E-value=40 Score=33.45 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.2
Q ss_pred eeEEEEccChhHHHHHHHHHcCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
|||+|.|.|++|..+...|.+..
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g 23 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKK 23 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC
Confidence 47999999999999999988654
No 415
>PRK12320 hypothetical protein; Provisional
Probab=40.18 E-value=37 Score=38.17 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=26.4
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|||.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G---~~Vi~ldr 32 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG---HTVSGIAQ 32 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEEeC
Confidence 4899999 9999999999998875 68877764
No 416
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.07 E-value=53 Score=34.13 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=23.9
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
||.|+|.|..|+..++.|..+. .+|. +.|
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G---~~V~-~~D 30 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG---WEVV-VSD 30 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC---CEEE-EEC
Confidence 7999999999999999998875 5654 444
No 417
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=39.99 E-value=37 Score=32.95 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=25.3
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
.+|.|-| +|-||+.+++.|.+++ .+|+++.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g---~~V~~~~ 35 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG---YTVKATV 35 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC---CEEEEEE
Confidence 3799999 9999999999999875 5776654
No 418
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=39.82 E-value=74 Score=31.02 Aligned_cols=30 Identities=13% Similarity=0.167 Sum_probs=25.1
Q ss_pred eEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 70 kVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
+|.|+| .|.||+.+++++.... .+++++.+
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~~ 179 (341)
T cd08290 149 WVIQNGANSAVGQAVIQLAKLLG---IKTINVVR 179 (341)
T ss_pred EEEEccchhHHHHHHHHHHHHcC---CeEEEEEc
Confidence 789999 7999999999888775 67777765
No 419
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=39.56 E-value=23 Score=35.24 Aligned_cols=35 Identities=31% Similarity=0.542 Sum_probs=27.3
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCC------CCceEEEEec
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKD------SPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~------~~~evvaInd 102 (403)
+++|+|+|+|-|||.+|+.+..... -.+.+|+|.+
T Consensus 3 ~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~ 43 (364)
T KOG0455|consen 3 KVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCD 43 (364)
T ss_pred cccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEec
Confidence 5789999999999999998764211 1378888887
No 420
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.55 E-value=90 Score=32.15 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=22.5
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
-.+||-|.|.||-.++.-...+.- =.|++|.
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GA--srIIgvD 224 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGA--SRIIGVD 224 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCc--ccEEEEe
Confidence 469999999999888776655432 3566664
No 421
>PLN02702 L-idonate 5-dehydrogenase
Probab=39.29 E-value=68 Score=31.93 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=19.7
Q ss_pred eeEEEEccChhHHHHHHHHHcCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
-+|.|+|.|.+|+..++++....
T Consensus 183 ~~vlI~g~g~vG~~~~~~a~~~G 205 (364)
T PLN02702 183 TNVLVMGAGPIGLVTMLAARAFG 205 (364)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC
Confidence 37899999999999999887764
No 422
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=39.25 E-value=2.5e+02 Score=26.53 Aligned_cols=87 Identities=24% Similarity=0.295 Sum_probs=49.0
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhccccceecccCcceeeecCCeEEECCEEEEEEecC
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~~I~v~~~~ 147 (403)
-+|.|.| .|.+|+.+++++.... ..+.++.. +.+....+.+ +|. ....+.. .
T Consensus 134 ~~vli~g~~~~~g~~~~~~a~~~g---~~v~~~~~--~~~~~~~~~~----~g~----------~~~~~~~--------~ 186 (305)
T cd08270 134 RRVLVTGASGGVGRFAVQLAALAG---AHVVAVVG--SPARAEGLRE----LGA----------AEVVVGG--------S 186 (305)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC---CEEEEEeC--CHHHHHHHHH----cCC----------cEEEecc--------c
Confidence 4789999 6999999999887764 56665543 2232222221 110 0111110 1
Q ss_pred CCCCCCCCCcCccEEeeCCCCcCCHhhHHHHHHcCCCeEEE
Q 015637 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (403)
Q Consensus 148 dp~~i~w~~~gvDiV~e~tG~f~s~~~a~~hl~aGakkVII 188 (403)
+ +...++|++++|+|.- ..+.+-.++..+.+.|.+
T Consensus 187 ~-----~~~~~~d~vl~~~g~~-~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 187 E-----LSGAPVDLVVDSVGGP-QLARALELLAPGGTVVSV 221 (305)
T ss_pred c-----ccCCCceEEEECCCcH-HHHHHHHHhcCCCEEEEE
Confidence 1 1123799999999864 445566777766533333
No 423
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=39.04 E-value=48 Score=29.87 Aligned_cols=30 Identities=20% Similarity=0.102 Sum_probs=24.5
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
-||-|+|-|.||.+.++.|.+.+ -+|+.|+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~g---a~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG---AFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEc
Confidence 47999999999999999998764 4665564
No 424
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=38.92 E-value=1.4e+02 Score=32.23 Aligned_cols=102 Identities=19% Similarity=0.278 Sum_probs=59.0
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecC---------CChhHHhhhccccceecccCcceeeecCCeEEECCE
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT---------GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGK 139 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~---------~~~~~~a~ll~yDS~~G~f~~~v~~~~~~~l~i~G~ 139 (403)
.|+.|=|||-||.-..+.|.+.. =.+|+|.|. .+++.+ +.+-..++.+.. .++.+..-.+-
T Consensus 252 kr~~i~G~Gnv~~~aa~~l~~~G---~kvvavsD~~G~l~np~Gid~~eL---~~~~~~k~~i~~----f~~~~~~~~~~ 321 (514)
T KOG2250|consen 252 KRVVIQGFGNVGGHAAKKLSEKG---AKVVAVSDSKGVLINPDGIDIEEL---LDLADEKKTIKS----FDGAKLSYEGY 321 (514)
T ss_pred eEEEEeCCCchHHHHHHHHHhcC---CEEEEEEcCceeEECCCCCCHHHH---HHHHHhhccccc----cccccccCccc
Confidence 58999999999999999888654 367788773 234433 222232333221 12222222220
Q ss_pred EEEEEecCCCCCCCCCCcCccEEeeCC-CCcCCHhhHHHHHHcCCCeEEE
Q 015637 140 VIQVVSNRNPVNLPWGDLGIDLVIEGT-GVFVDREGAGKHIQAGAKKVLI 188 (403)
Q Consensus 140 ~I~v~~~~dp~~i~w~~~gvDiV~e~t-G~f~s~~~a~~hl~aGakkVII 188 (403)
.. ..|. ..|- ..+||.+=|. ...++.+.|..-.+.|+| .|+
T Consensus 322 --~~---~~~~-~~~v-~~~DI~vPCA~qn~I~~~nA~~lvak~~~-~Iv 363 (514)
T KOG2250|consen 322 --IA---GLPP-WTLV-EKCDILVPCATQNEITGENAKALVAKGCK-YIV 363 (514)
T ss_pred --cc---cCcc-hhhH-hhCcEEeecCccCcccHhhHHHHHhcCCc-EEE
Confidence 01 1121 1232 3689999886 667788888877777773 344
No 425
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=38.89 E-value=2.6e+02 Score=27.07 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=23.2
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEE
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaI 100 (403)
+|.|+|.|.+|+.+++++.... +.|+.+
T Consensus 167 ~vlI~g~g~~g~~~~~la~~~G---~~v~~~ 194 (306)
T cd08258 167 TVVVFGPGPIGLLAAQVAKLQG---ATVVVV 194 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CEEEEE
Confidence 6788899999999999988775 676655
No 426
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=38.89 E-value=42 Score=35.89 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=25.9
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
|||+|.|.|.||-.+.-+|.++. ..++|+++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g-~g~~V~gvD 33 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKC-PDIEVVVVD 33 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCCeEEEEE
Confidence 68999999999999988887652 137888875
No 427
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=38.89 E-value=48 Score=30.22 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=25.6
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.+|.|.| .|.||+.+++.|.+++ .+|+.+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g---~~v~~~~r 37 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADG---AKVVIYDS 37 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 4799999 9999999999999875 56666654
No 428
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=38.81 E-value=40 Score=32.30 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=24.0
Q ss_pred eEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 70 kVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
||-|.| +|-||+.+++.|.++. .+|+.+.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g---~~V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG---HEVVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC---CeEEEEe
Confidence 578999 9999999999998875 5776654
No 429
>PF07683 CobW_C: Cobalamin synthesis protein cobW C-terminal domain; InterPro: IPR011629 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [].; PDB: 1NIJ_A.
Probab=38.71 E-value=39 Score=26.93 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=34.5
Q ss_pred EEEEEEEccCCCHHHHHHHHHhcccc--cCcCcccccCCC-ceeecCCCCCcc
Q 015637 310 VDLVVQVSKKTFAEEVNAAFRESADN--ELKGILSVCDEP-LVSVDFRCSDVS 359 (403)
Q Consensus 310 ~dl~v~~~k~~s~eeI~~al~~aa~~--~lkgil~~~~~p-~VS~D~~~~~~s 359 (403)
..++++.+++.+.+.+.+.|.+...+ ..||++.+.++| ....+..++.+.
T Consensus 2 ~s~~~~~~~p~~~~~l~~~l~~~~~~vlR~KG~v~~~~~~~~~~~q~v~~~~~ 54 (94)
T PF07683_consen 2 SSVTFEFDRPFDPERLEAWLQELPGDVLRAKGIVWVADGPRRLVFQGVGGRYD 54 (94)
T ss_dssp EEEEEEESS-B-HHHHHHHHHHTTTTEEEEEEEE-BTT-SEEEEEEEETTEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHhCCCCEEEEEEEEEeCCcCeEEEEEeeCCEEE
Confidence 46889999999999999999995544 579999998773 444555555443
No 430
>PRK07023 short chain dehydrogenase; Provisional
Probab=38.71 E-value=42 Score=31.13 Aligned_cols=30 Identities=10% Similarity=0.248 Sum_probs=24.7
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
+++-|.| +|.||+.+++.|.++. .+|+.+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G---~~v~~~~ 32 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG---IAVLGVA 32 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC---CEEEEEe
Confidence 4899999 9999999999998775 5765553
No 431
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=38.70 E-value=41 Score=33.61 Aligned_cols=41 Identities=22% Similarity=0.419 Sum_probs=31.0
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec----CCChhHHhhhc
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND----TGGVKQASHLL 113 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd----~~~~~~~a~ll 113 (403)
|||.|.| .|.+|+.+.+.|. + .++|+++.. +.+++.+..++
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~--~--~~~v~a~~~~~~Ditd~~~v~~~i 46 (281)
T COG1091 1 MKILITGANGQLGTELRRALP--G--EFEVIATDRAELDITDPDAVLEVI 46 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC--C--CceEEeccCccccccChHHHHHHH
Confidence 4599999 9999999999886 2 278888743 56666666665
No 432
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=38.40 E-value=30 Score=37.17 Aligned_cols=126 Identities=15% Similarity=0.193 Sum_probs=67.4
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecCCChhHHhhhcc-ccceecc----cCcceee-ecC---CeEEECCE
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGI----FEADVKP-VGT---DGISVDGK 139 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~~~~~~~a~ll~-yDS~~G~----f~~~v~~-~~~---~~l~i~G~ 139 (403)
.+||++|+|..|+.+.+-|.++. ++|..-|-. ++....+.+ ... .|. ...+++- .+. -.++
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G---~~V~V~NRt--~~k~~~l~~~~~~-~Ga~~~~~a~s~~e~v~~l~~~dvI---- 76 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKG---FPISVYNRT--TSKVDETVERAKK-EGNLPLYGFKDPEDFVLSIQKPRSV---- 76 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCC---CeEEEECCC--HHHHHHHHHhhhh-cCCcccccCCCHHHHHhcCCCCCEE----
Confidence 48999999999999999999875 887766642 322222221 000 010 0011110 011 1111
Q ss_pred EEEEEecCCCCC--------CCCCCcCccEEeeCCCCc--CCHhhHHHHHHcCCCeEEEcCCC----C--CCCCeEEeec
Q 015637 140 VIQVVSNRNPVN--------LPWGDLGIDLVIEGTGVF--VDREGAGKHIQAGAKKVLITAPG----K--GDIPTYVVGV 203 (403)
Q Consensus 140 ~I~v~~~~dp~~--------i~w~~~gvDiV~e~tG~f--~s~~~a~~hl~aGakkVIIsaps----~--~dvp~vV~gV 203 (403)
|.++ .+++. ++--+ .-|++||++-.. .+.+.++...+.|+ -.+.+|- . ..-|++.+|=
T Consensus 77 -i~~v--~~~~aV~~Vi~gl~~~l~-~G~iiID~sT~~~~~t~~~~~~l~~~Gi--~fldapVSGG~~gA~~G~~im~GG 150 (493)
T PLN02350 77 -IILV--KAGAPVDQTIKALSEYME-PGDCIIDGGNEWYENTERRIKEAAEKGL--LYLGMGVSGGEEGARNGPSLMPGG 150 (493)
T ss_pred -EEEC--CCcHHHHHHHHHHHhhcC-CCCEEEECCCCCHHHHHHHHHHHHHcCC--eEEeCCCcCCHHHhcCCCeEEecC
Confidence 1121 22211 11111 238999997553 34445555556777 4677772 1 2346888898
Q ss_pred CccCCCC
Q 015637 204 NADAYKP 210 (403)
Q Consensus 204 N~~~~~~ 210 (403)
+.+.|+.
T Consensus 151 ~~~a~~~ 157 (493)
T PLN02350 151 SFEAYKN 157 (493)
T ss_pred CHHHHHH
Confidence 8887753
No 433
>PRK05086 malate dehydrogenase; Provisional
Probab=38.35 E-value=51 Score=33.08 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=18.2
Q ss_pred eeEEEEc-cChhHHHHHHHHHc
Q 015637 69 LKVAING-FGRIGRNFLRCWHG 89 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~ 89 (403)
|||+|.| +|.||+.++..|..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~ 22 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKT 22 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHc
Confidence 5899999 59999999987754
No 434
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=38.28 E-value=1.5e+02 Score=28.90 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=24.6
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-+|.|+| .|.+|+.+++++.... .+++++.+
T Consensus 164 ~~vlI~g~~g~ig~~~~~~a~~~G---~~v~~~~~ 195 (350)
T cd08248 164 KRVLILGGSGGVGTFAIQLLKAWG---AHVTTTCS 195 (350)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CeEEEEeC
Confidence 4789999 8999999999887764 67766654
No 435
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=38.00 E-value=86 Score=29.78 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=24.8
Q ss_pred eEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 70 kVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
+|.|.| .|.+|+.+++++..+. ..|+++..
T Consensus 145 ~vlV~ga~g~~g~~~~~~a~~~g---~~v~~~~~ 175 (320)
T cd08243 145 TLLIRGGTSSVGLAALKLAKALG---ATVTATTR 175 (320)
T ss_pred EEEEEcCCChHHHHHHHHHHHcC---CEEEEEeC
Confidence 789999 7999999999988775 67766654
No 436
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=38.00 E-value=46 Score=33.92 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=26.4
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.+|+|+|-|..||.+.+++.... ++++.+..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG---~~v~~~d~ 33 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLG---YKVIVLDP 33 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CEEEEEeC
Confidence 47999999999999999888875 88877754
No 437
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=37.96 E-value=35 Score=32.26 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=24.0
Q ss_pred EEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 71 VAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 71 VaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|-|-| +|.||+.+++.|.++. .+|++++.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r 30 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG---HEVTILTR 30 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC---CEEEEEeC
Confidence 35788 9999999999998865 78887775
No 438
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.73 E-value=52 Score=30.58 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=25.5
Q ss_pred CceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 67 m~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
|...|-|.| .|.||+.+++.|.++. .+|+.+.
T Consensus 1 ~~k~vlItG~sg~iG~~la~~L~~~g---~~vi~~~ 33 (256)
T PRK12745 1 MRPVALVTGGRRGIGLGIARALAAAG---FDLAIND 33 (256)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 334577889 9999999999999875 5777665
No 439
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=37.70 E-value=47 Score=30.79 Aligned_cols=31 Identities=26% Similarity=0.115 Sum_probs=25.0
Q ss_pred CceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEE
Q 015637 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAI 100 (403)
Q Consensus 67 m~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaI 100 (403)
|+.+|.|.| .|.||+.+++.|.++. .+++.+
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g---~~v~~~ 32 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARG---WSVGIN 32 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCC---CEEEEE
Confidence 555899999 9999999999998875 566543
No 440
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=37.70 E-value=34 Score=29.39 Aligned_cols=102 Identities=14% Similarity=0.217 Sum_probs=50.4
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec-CCChhHHhhhccccc-eecccCcceeeecCCeE-EEC-CEEEEEE
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDS-TLGIFEADVKPVGTDGI-SVD-GKVIQVV 144 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd-~~~~~~~a~ll~yDS-~~G~f~~~v~~~~~~~l-~i~-G~~I~v~ 144 (403)
.||.|.|.|.+|-.+++.|....-+ ++.-+.+ ..+++.+.+-+-|.. .-|+.+...- .+.| .++ +-.+..+
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~--~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~---~~~l~~~np~~~v~~~ 77 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVG--KITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAA---KERLQEINPDVEVEAI 77 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTS--EEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHH---HHHHHHHSTTSEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCC--ceeecCCcceeecccccccccccccchhHHHHHH---HHHHHHhcCceeeeee
Confidence 5899999999999999999865422 3333444 345554444222222 2355433210 0000 011 1223333
Q ss_pred ecCCC--CCCC-CCCcCccEEeeCCCCcCCHhhHHH
Q 015637 145 SNRNP--VNLP-WGDLGIDLVIEGTGVFVDREGAGK 177 (403)
Q Consensus 145 ~~~dp--~~i~-w~~~gvDiV~e~tG~f~s~~~a~~ 177 (403)
.. +. +++. +- .+.|+||+|++.+..+.....
T Consensus 78 ~~-~~~~~~~~~~~-~~~d~vi~~~d~~~~~~~l~~ 111 (135)
T PF00899_consen 78 PE-KIDEENIEELL-KDYDIVIDCVDSLAARLLLNE 111 (135)
T ss_dssp ES-HCSHHHHHHHH-HTSSEEEEESSSHHHHHHHHH
T ss_pred ec-ccccccccccc-cCCCEEEEecCCHHHHHHHHH
Confidence 21 12 1110 11 268999999987655544443
No 441
>PRK12827 short chain dehydrogenase; Provisional
Probab=37.43 E-value=49 Score=30.39 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=25.1
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
+++-|.| .|.||+.+++.|.++. .+++.+.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g---~~v~~~~ 37 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADG---ADVIVLD 37 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CeEEEEc
Confidence 5799999 9999999999999875 5766654
No 442
>PLN02583 cinnamoyl-CoA reductase
Probab=37.35 E-value=47 Score=32.37 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=25.5
Q ss_pred eEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 70 kVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
+|.|-| +|.||+.+++.|.++. .+|+++..
T Consensus 8 ~vlVTGatG~IG~~lv~~Ll~~G---~~V~~~~R 38 (297)
T PLN02583 8 SVCVMDASGYVGFWLVKRLLSRG---YTVHAAVQ 38 (297)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC---CEEEEEEc
Confidence 689999 9999999999999875 68777653
No 443
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=37.33 E-value=42 Score=33.21 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.8
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCC
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRK 91 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~ 91 (403)
.||-|-| +|-||+.+++.|.++.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g 25 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET 25 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC
Confidence 3899999 9999999999999874
No 444
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=37.31 E-value=55 Score=26.49 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=26.2
Q ss_pred EEEEEccCCCHHHHHH-HHHhcccccCcCcccccCCC
Q 015637 312 LVVQVSKKTFAEEVNA-AFRESADNELKGILSVCDEP 347 (403)
Q Consensus 312 l~v~~~k~~s~eeI~~-al~~aa~~~lkgil~~~~~p 347 (403)
++++..+..+..+|++ +|++|..-||-+.|.=.++-
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~~~PL~~~L~~~~~Y 38 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAKKYPLFSLLKDPSSY 38 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGGGSTTCCCS--GGGE
T ss_pred eEEEccCcCcHHHHHHHHHHHHHhCChHHHhCCCCcE
Confidence 4677888999999998 78888888988877654443
No 445
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=37.11 E-value=76 Score=29.16 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=23.2
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
-+|.|+|.|.+|+.+++++.... .+++++.
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g---~~v~~~~ 165 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAG---ARVIVTD 165 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEc
Confidence 37999996669999999887764 5666564
No 446
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=37.07 E-value=44 Score=37.22 Aligned_cols=34 Identities=32% Similarity=0.442 Sum_probs=25.4
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
|-.||+|+|+|.+|+.+++.|..... ..+|.+++
T Consensus 2 ~~~~I~IIG~G~mG~ala~~l~~~G~-~~~V~~~d 35 (735)
T PRK14806 2 LFGRVVVIGLGLIGGSFAKALRERGL-AREVVAVD 35 (735)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCC-CCEEEEEE
Confidence 33589999999999999999986531 13566555
No 447
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=37.02 E-value=1.8e+02 Score=28.58 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=22.5
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCc-eEEEE
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPL-EVVAI 100 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~-evvaI 100 (403)
+|.|+|.|.+|+.+++++.... . .++++
T Consensus 166 ~vlV~g~g~vg~~~~~la~~~G---~~~v~~~ 194 (341)
T cd05281 166 SVLITGCGPIGLMAIAVAKAAG---ASLVIAS 194 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CcEEEEE
Confidence 7889999999999999888764 5 45555
No 448
>PRK06924 short chain dehydrogenase; Provisional
Probab=36.42 E-value=55 Score=30.37 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=24.3
Q ss_pred eEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 70 kVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
+|-|.| .|.||+.+++.|.+++ .+|+.+.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g---~~V~~~~ 32 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKG---THVISIS 32 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcC---CEEEEEe
Confidence 688999 9999999999999875 5776554
No 449
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=35.93 E-value=46 Score=33.38 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=20.4
Q ss_pred eeEEEEccChhHHHHHHHHHcCC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
|||+|.|.|.||..+.-.|...+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g 23 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG 23 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC
Confidence 58999999999999988888764
No 450
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=35.58 E-value=1.7e+02 Score=28.41 Aligned_cols=31 Identities=23% Similarity=0.175 Sum_probs=24.9
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-++.|.|.|.+|+.+++.|.+.. .+|...|.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g---~~v~v~~R 148 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKAD---CNVIIANR 148 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 37999999999999999998764 46655554
No 451
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=35.40 E-value=61 Score=32.79 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=18.5
Q ss_pred eEEEEcc-ChhHHHHHHHHHcC
Q 015637 70 KVAINGF-GRIGRNFLRCWHGR 90 (403)
Q Consensus 70 kVaInGf-GrIGr~vlr~l~~~ 90 (403)
||+|.|. |+||..++..|..+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~ 22 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG 22 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc
Confidence 6999996 99999999988764
No 452
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=35.40 E-value=24 Score=36.25 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=21.5
Q ss_pred CceeEEEEccChhHHHHHHHHHcCC
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
+..||.|+|.|-+|..++..|....
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~G 158 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAG 158 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcC
Confidence 3468999999999999999998654
No 453
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=35.23 E-value=1.2e+02 Score=30.45 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.3
Q ss_pred eEEEEccChhHHHHHHHHHcCC
Q 015637 70 KVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~ 91 (403)
+|.|+|-|.+|+.+++++....
T Consensus 186 ~vlI~g~g~vG~~a~~~a~~~G 207 (365)
T cd05279 186 TCAVFGLGGVGLSVIMGCKAAG 207 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHcC
Confidence 7899999999999998887764
No 454
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=35.19 E-value=51 Score=36.23 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=27.3
Q ss_pred ceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 68 ~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.+||.|-| +|.||+.+++.|.++. ...+|+++..
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g-~~~~V~~~d~ 40 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNY-PDYKIVVLDK 40 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhC-CCCEEEEEeC
Confidence 35899999 9999999999998762 1378887754
No 455
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=34.82 E-value=53 Score=30.21 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=25.7
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.+|.|.| .|.||+.+++.|.++. ..|+.+..
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g---~~V~~~~r 38 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADG---AEVIVVDI 38 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCC---CEEEEEeC
Confidence 4799999 9999999999998875 57766653
No 456
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=34.77 E-value=59 Score=29.65 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=24.6
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.++.|.| +|.+|+.+++.|.++. .+|+.++.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g---~~V~l~~R 60 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREG---ARVVLVGR 60 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CEEEEEcC
Confidence 4899999 8999999999998764 46655553
No 457
>PRK08267 short chain dehydrogenase; Provisional
Probab=34.74 E-value=60 Score=30.42 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=24.3
Q ss_pred eEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 70 kVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
++-|.| .|.||+.+++.|.++. ..|+.+.
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G---~~V~~~~ 32 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEG---WRVGAYD 32 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCC---CeEEEEe
Confidence 688999 9999999999998875 5766664
No 458
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.21 E-value=63 Score=33.24 Aligned_cols=39 Identities=26% Similarity=0.199 Sum_probs=26.1
Q ss_pred cccccCceeEEEEccChhHHHHHHHHHcCCCCCceEEEEecC
Q 015637 62 KVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (403)
Q Consensus 62 ~~~~~m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~ 103 (403)
++...+.-||.|.|.|.||-..+..+....- -+|| |.|+
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA--~~VV-i~d~ 202 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGA--SDVV-ITDL 202 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcCC--CcEE-Eeec
Confidence 3445566799999999999877776665432 3444 4454
No 459
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=34.18 E-value=29 Score=33.58 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=17.9
Q ss_pred EEEEcc-ChhHHHHHHHHHcCC
Q 015637 71 VAINGF-GRIGRNFLRCWHGRK 91 (403)
Q Consensus 71 VaInGf-GrIGr~vlr~l~~~~ 91 (403)
|+|.|. |.+|..++..|...+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~ 22 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGS 22 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCC
Confidence 689997 999999999887653
No 460
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=34.15 E-value=1.6e+02 Score=28.95 Aligned_cols=29 Identities=24% Similarity=0.093 Sum_probs=22.6
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCce-EEEE
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAI 100 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~e-vvaI 100 (403)
-+|.|+|.|.+|+.+++++.... .. ++++
T Consensus 164 ~~vlI~g~g~vG~~a~~lak~~G---~~~v~~~ 193 (343)
T cd05285 164 DTVLVFGAGPIGLLTAAVAKAFG---ATKVVVT 193 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEE
Confidence 37889999999999999887764 55 5444
No 461
>PRK06046 alanine dehydrogenase; Validated
Probab=33.90 E-value=59 Score=32.71 Aligned_cols=33 Identities=30% Similarity=0.234 Sum_probs=27.4
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEecC
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd~ 103 (403)
-+|+|.|+|..|+..++.+...+ .++.+.|-+.
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~--~i~~v~v~~r 162 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVF--DLEEVRVYDR 162 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhC--CceEEEEECC
Confidence 58999999999999999987543 3888888764
No 462
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=33.70 E-value=66 Score=28.68 Aligned_cols=30 Identities=30% Similarity=0.322 Sum_probs=25.1
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
++.|.|.|.-|+.+++.|.++. +++++.=|
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g---~~vvgfid 30 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSG---WEIVGFLD 30 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCC---CEEEEEEc
Confidence 4789999999999999997653 88887755
No 463
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=33.59 E-value=2.1e+02 Score=29.00 Aligned_cols=30 Identities=23% Similarity=0.117 Sum_probs=23.2
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
=+|.|+| .|.||+.+++++.... ..++.+.
T Consensus 191 ~~vlV~Ga~g~vG~~ai~~ak~~G---~~vi~~~ 221 (398)
T TIGR01751 191 DNVLIWGAAGGLGSYATQLARAGG---GNPVAVV 221 (398)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHcC---CeEEEEc
Confidence 3799999 6999999998887664 5655553
No 464
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=33.59 E-value=49 Score=34.42 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=21.6
Q ss_pred ceeEEEEccChhHHHHHHHHHcCC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
+.+|||.|||-.||.+.+-+....
T Consensus 52 tl~IaIIGfGnmGqflAetli~aG 75 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAG 75 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcC
Confidence 579999999999999999988764
No 465
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=33.50 E-value=57 Score=30.16 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=22.1
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEE
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaI 100 (403)
-+|+|+|||.-|+.....|.+.. ++|+.-
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG---~~V~Vg 33 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSG---VNVIVG 33 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC----EEEEE
T ss_pred CEEEEECCChHHHHHHHHHHhCC---CCEEEE
Confidence 37999999999999998888765 776533
No 466
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=33.47 E-value=57 Score=32.28 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=25.6
Q ss_pred eEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 70 kVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
+|-|-| +|-||+.+++.|.++. .+|+++..
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r 32 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKG---YEVHGLIR 32 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCC---CEEEEEec
Confidence 688999 9999999999999875 68887754
No 467
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=33.34 E-value=55 Score=36.07 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=26.9
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
+||.|-| +|-||+.+++.|.++. ..+|+++..
T Consensus 316 ~~VLVTGatGFIGs~Lv~~Ll~~~--g~~V~~l~r 348 (660)
T PRK08125 316 TRVLILGVNGFIGNHLTERLLRDD--NYEVYGLDI 348 (660)
T ss_pred CEEEEECCCchHHHHHHHHHHhCC--CcEEEEEeC
Confidence 5899999 9999999999998752 278888864
No 468
>PRK05884 short chain dehydrogenase; Provisional
Probab=33.24 E-value=63 Score=29.96 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=24.3
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
||+-|-| .|.||+.+++.|.++. ..|+.+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g---~~v~~~~ 31 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDG---HKVTLVG 31 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 3789999 8999999999998765 5766554
No 469
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=33.09 E-value=1.5e+02 Score=26.29 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=22.5
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEE
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAI 100 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaI 100 (403)
-+|.|.| ...+|+.+...|.++. ..+..+
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~g---atV~~~ 58 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDG---ATVYSC 58 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC---CEEEEe
Confidence 4789999 9999999999988764 554333
No 470
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=32.95 E-value=2.5e+02 Score=26.85 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=24.9
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-+|.|+| .|.+|+.+++++.... .+++++..
T Consensus 144 ~~vlI~g~~~~~g~~~~~la~~~g---~~v~~~~~ 175 (324)
T cd08244 144 DVVLVTAAAGGLGSLLVQLAKAAG---ATVVGAAG 175 (324)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC---CEEEEEeC
Confidence 3699999 8999999999888775 67766653
No 471
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.82 E-value=54 Score=34.06 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=23.6
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|||.|.|+|+.|+.++|.|. +. .+|. +.|
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G---~~V~-~~D 29 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KF---GGVD-IFD 29 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CC---CeEE-EEc
Confidence 47999999999999999999 75 5654 444
No 472
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.55 E-value=67 Score=29.45 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=24.2
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEE
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAI 100 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaI 100 (403)
.++-|.| +|.||+.+++.|.++. .+++.+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g---~~v~~~ 35 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEG---AKVVIA 35 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC---CEEEEE
Confidence 4789999 9999999999998764 677665
No 473
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=32.03 E-value=1.2e+02 Score=29.63 Aligned_cols=29 Identities=28% Similarity=0.156 Sum_probs=22.4
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCc-eEEEE
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAI 100 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~-evvaI 100 (403)
-+|.|.|-|.+|+.+++++.... . .|+++
T Consensus 165 ~~vlV~~~g~vg~~~~~la~~~G---~~~v~~~ 194 (341)
T PRK05396 165 EDVLITGAGPIGIMAAAVAKHVG---ARHVVIT 194 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC---CCEEEEE
Confidence 37889999999999998887654 4 45555
No 474
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=31.95 E-value=2.2e+02 Score=28.74 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=23.2
Q ss_pred eEEEEccChhHHHHHHHHHcCCCCCc-eEEEEe
Q 015637 70 KVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~~~~~-evvaIn 101 (403)
+|.|+|.|.+|..+++++.... . .|+++.
T Consensus 206 ~VlV~g~g~vG~~ai~lA~~~G---~~~vi~~~ 235 (384)
T cd08265 206 YVVVYGAGPIGLAAIALAKAAG---ASKVIAFE 235 (384)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CCEEEEEc
Confidence 7899999999999999888775 5 455553
No 475
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=31.82 E-value=97 Score=30.48 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=19.4
Q ss_pred eEEEEccChhHHHHHHHHHcCC
Q 015637 70 KVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 70 kVaInGfGrIGr~vlr~l~~~~ 91 (403)
+|.|+|.|.+|+.+++++....
T Consensus 178 ~vlI~g~g~vg~~~~~~a~~~G 199 (350)
T cd08240 178 PVVIIGAGGLGLMALALLKALG 199 (350)
T ss_pred EEEEECCcHHHHHHHHHHHHcC
Confidence 6899999999999999888764
No 476
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.60 E-value=71 Score=29.43 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=25.4
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.+|.|.| +|.||+.+++.|.++. .+|+.+..
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G---~~V~~~~r 37 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEG---ARVVVTDR 37 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCC---CEEEEEeC
Confidence 3789999 9999999999999875 57766653
No 477
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=31.32 E-value=86 Score=34.36 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=27.7
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
+..||||+|-|..||.+++++.+.. ++++.+..
T Consensus 21 ~~k~IgIIGgGqlg~mla~aA~~lG---~~Vi~ld~ 53 (577)
T PLN02948 21 SETVVGVLGGGQLGRMLCQAASQMG---IKVKVLDP 53 (577)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 3568999999999999999998875 88877753
No 478
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=31.23 E-value=1.5e+02 Score=29.11 Aligned_cols=30 Identities=17% Similarity=0.104 Sum_probs=24.3
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
=+|.|+| .|.+|+.+++++.... +.++++.
T Consensus 156 ~~vlI~ga~g~vg~~~~~~a~~~G---~~v~~~~ 186 (339)
T cd08249 156 KPVLIWGGSSSVGTLAIQLAKLAG---YKVITTA 186 (339)
T ss_pred CEEEEEcChhHHHHHHHHHHHHcC---CeEEEEE
Confidence 3789999 7999999999988775 6776654
No 479
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=31.21 E-value=18 Score=30.26 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=25.2
Q ss_pred cCccEEeeCCCCcCCHhhHHHHHHcCCCeEEEcCCC
Q 015637 157 LGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (403)
Q Consensus 157 ~gvDiV~e~tG~f~s~~~a~~hl~aGakkVIIsaps 192 (403)
.++|+||||+|.....+.+-..++.|.+-+++..+.
T Consensus 57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 479999999996555566666666676556665544
No 480
>PLN02650 dihydroflavonol-4-reductase
Probab=30.93 E-value=61 Score=32.16 Aligned_cols=30 Identities=27% Similarity=0.222 Sum_probs=25.2
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
.+|-|-| +|.||+.+++.|.++. .+|+++.
T Consensus 6 k~iLVTGatGfIGs~l~~~L~~~G---~~V~~~~ 36 (351)
T PLN02650 6 ETVCVTGASGFIGSWLVMRLLERG---YTVRATV 36 (351)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHCC---CEEEEEE
Confidence 4799999 9999999999999875 6776653
No 481
>PRK07024 short chain dehydrogenase; Provisional
Probab=30.92 E-value=78 Score=29.69 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=25.1
Q ss_pred CceeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 67 m~ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
|+.+|-|-| +|.||+.+++.|.++. ..|+.+.
T Consensus 1 ~~~~vlItGas~gIG~~la~~l~~~G---~~v~~~~ 33 (257)
T PRK07024 1 MPLKVFITGASSGIGQALAREYARQG---ATLGLVA 33 (257)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 335788999 9999999999998774 5666554
No 482
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=30.81 E-value=60 Score=27.61 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=28.2
Q ss_pred CceeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 67 m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|--||-|.|-|.|+.+++|.+.+.. ++.|+|+.
T Consensus 1 ~ikkvLIanrGeia~r~~ra~r~~G---i~tv~v~s 33 (110)
T PF00289_consen 1 MIKKVLIANRGEIAVRIIRALRELG---IETVAVNS 33 (110)
T ss_dssp SSSEEEESS-HHHHHHHHHHHHHTT---SEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhC---CcceeccC
Confidence 3348999999999999999999986 89999986
No 483
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.78 E-value=1.7e+02 Score=21.03 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=33.0
Q ss_pred CCCCCChHHHHHHhccccCCceeEEEEeccc----ccccEEEEEEEEccCCCHHHHHHHHHh
Q 015637 274 VPTSTGAAKAVALVLPALKGKLNGIALRVPT----PNVSVVDLVVQVSKKTFAEEVNAAFRE 331 (403)
Q Consensus 274 IP~~tGaakav~kVlPeL~gkl~~~avRVPv----~~gs~~dl~v~~~k~~s~eeI~~al~~ 331 (403)
+|...|.-..+..++-+.+..|.....+-+- ..-..+.+++++......+++.+.|++
T Consensus 5 ~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~ 66 (73)
T cd04886 5 LPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALRE 66 (73)
T ss_pred eCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 3555676667777787777778766655332 233445555655432334455555554
No 484
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=30.75 E-value=78 Score=31.94 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.1
Q ss_pred eEEEEcc-ChhHHHHHHHHHcCC
Q 015637 70 KVAINGF-GRIGRNFLRCWHGRK 91 (403)
Q Consensus 70 kVaInGf-GrIGr~vlr~l~~~~ 91 (403)
||+|.|. |.||..++-.|..++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~ 23 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQP 23 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCC
Confidence 7999996 999999998887654
No 485
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=30.67 E-value=63 Score=31.22 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=23.0
Q ss_pred EEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 71 VAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 71 VaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
|-|.| +|-||+.+++.|.+++ .+++++-+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g---~~~v~~~~ 31 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG---ITDILVVD 31 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC---CceEEEec
Confidence 56889 9999999999998875 55555544
No 486
>PLN00203 glutamyl-tRNA reductase
Probab=30.60 E-value=56 Score=35.40 Aligned_cols=32 Identities=19% Similarity=0.411 Sum_probs=25.4
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.+|+|+|+|.+|+.+++.|..++. -+|+.+|.
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~--~~V~V~nR 298 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGC--TKMVVVNR 298 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCC--CeEEEEeC
Confidence 589999999999999999987641 24655664
No 487
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.53 E-value=74 Score=28.99 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=23.4
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEE
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAI 100 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaI 100 (403)
.+|-|.| +|-||+.+++.|.++. .+++.+
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g---~~v~~~ 36 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAG---ADVVVH 36 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC---CeEEEE
Confidence 4799999 9999999999998875 455443
No 488
>PRK08219 short chain dehydrogenase; Provisional
Probab=30.50 E-value=47 Score=30.08 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=23.9
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
.++-|.| .|.||+.+++.|.++ .+|+++..
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~----~~V~~~~r 34 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT----HTLLLGGR 34 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh----CCEEEEeC
Confidence 4799999 999999999999875 35665653
No 489
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=30.48 E-value=48 Score=33.41 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=19.9
Q ss_pred eeEEEEcc-ChhHHHHHHHHHcCC
Q 015637 69 LKVAINGF-GRIGRNFLRCWHGRK 91 (403)
Q Consensus 69 ikVaInGf-GrIGr~vlr~l~~~~ 91 (403)
|||+|.|. |.||..++-.|..++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~ 24 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNP 24 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 58999996 999999999887654
No 490
>PRK14852 hypothetical protein; Provisional
Probab=30.40 E-value=41 Score=39.20 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=20.7
Q ss_pred ceeEEEEccChhHHHHHHHHHcCC
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~ 91 (403)
.-||+|+|.|-+|-.++..|....
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraG 355 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTG 355 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcC
Confidence 468999999999999999887654
No 491
>PRK10537 voltage-gated potassium channel; Provisional
Probab=29.43 E-value=68 Score=33.43 Aligned_cols=31 Identities=19% Similarity=0.087 Sum_probs=25.1
Q ss_pred eeEEEEccChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 69 ikVaInGfGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
-.|-|.|+|++|+.+++.|.++. .+++.|.+
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g---~~vvVId~ 271 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRG---QAVTVIVP 271 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCC---CCEEEEEC
Confidence 45999999999999999998764 56666653
No 492
>PRK05993 short chain dehydrogenase; Provisional
Probab=29.34 E-value=84 Score=30.00 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=24.9
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
.+|-|.| .|.||+.+++.|.++. .+|+.+.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G---~~Vi~~~ 35 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDG---WRVFATC 35 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEE
Confidence 4688999 8999999999998875 6776664
No 493
>PRK05586 biotin carboxylase; Validated
Probab=29.32 E-value=66 Score=33.61 Aligned_cols=31 Identities=26% Similarity=0.316 Sum_probs=27.0
Q ss_pred ceeEEEEccChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 68 ~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
.-||+|.|-|.+|+.+++.+.+.. ++++++.
T Consensus 2 ~kkvli~g~G~~~~~~~~aa~~lG---~~~v~v~ 32 (447)
T PRK05586 2 FKKILIANRGEIAVRIIRACREMG---IETVAVY 32 (447)
T ss_pred cceEEEECCcHHHHHHHHHHHHcC---CcEEEEc
Confidence 349999999999999999999875 8888884
No 494
>PRK07074 short chain dehydrogenase; Provisional
Probab=29.17 E-value=85 Score=29.25 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=23.9
Q ss_pred eEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 70 kVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
++-|.| +|.||+.+.+.|.++. .+|+.+.
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g---~~v~~~~ 33 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAG---DRVLALD 33 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCC---CEEEEEe
Confidence 688999 9999999999998764 5766554
No 495
>PRK12828 short chain dehydrogenase; Provisional
Probab=29.00 E-value=79 Score=28.72 Aligned_cols=30 Identities=37% Similarity=0.499 Sum_probs=24.7
Q ss_pred eEEEEc-cChhHHHHHHHHHcCCCCCceEEEEec
Q 015637 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (403)
Q Consensus 70 kVaInG-fGrIGr~vlr~l~~~~~~~~evvaInd 102 (403)
+|-|.| +|.||+.+++.|.++. ..|+.+..
T Consensus 9 ~vlItGatg~iG~~la~~l~~~G---~~v~~~~r 39 (239)
T PRK12828 9 VVAITGGFGGLGRATAAWLAARG---ARVALIGR 39 (239)
T ss_pred EEEEECCCCcHhHHHHHHHHHCC---CeEEEEeC
Confidence 689999 9999999999998775 57766653
No 496
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.99 E-value=54 Score=34.89 Aligned_cols=32 Identities=28% Similarity=0.207 Sum_probs=25.7
Q ss_pred cCceeEEEEccChhHHHHHHHHHcCCCCCceEEEE
Q 015637 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (403)
Q Consensus 66 ~m~ikVaInGfGrIGr~vlr~l~~~~~~~~evvaI 100 (403)
.|+.+|+|+|.|..|-..+|.|.++. ++++..
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g---~~v~vf 35 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREG---HEVVVF 35 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCC---CCceEE
Confidence 35679999999999999999998764 555444
No 497
>PTZ00325 malate dehydrogenase; Provisional
Probab=28.88 E-value=93 Score=31.55 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.1
Q ss_pred eeEEEEcc-ChhHHHHHHHHHcC
Q 015637 69 LKVAINGF-GRIGRNFLRCWHGR 90 (403)
Q Consensus 69 ikVaInGf-GrIGr~vlr~l~~~ 90 (403)
.||+|.|. |+||..+...|..+
T Consensus 9 ~KI~IiGaaG~VGs~~a~~l~~~ 31 (321)
T PTZ00325 9 FKVAVLGAAGGIGQPLSLLLKQN 31 (321)
T ss_pred CEEEEECCCCHHHHHHHHHHhcC
Confidence 39999996 99999999888754
No 498
>PRK07577 short chain dehydrogenase; Provisional
Probab=28.70 E-value=85 Score=28.68 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=24.2
Q ss_pred eEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 70 kVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
+|-|.| +|.||+.+++.|.++. .+|+.+.
T Consensus 5 ~vlItG~s~~iG~~ia~~l~~~G---~~v~~~~ 34 (234)
T PRK07577 5 TVLVTGATKGIGLALSLRLANLG---HQVIGIA 34 (234)
T ss_pred EEEEECCCCcHHHHHHHHHHHCC---CEEEEEe
Confidence 688999 9999999999998875 6776554
No 499
>PRK12829 short chain dehydrogenase; Provisional
Probab=28.33 E-value=81 Score=29.35 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=25.1
Q ss_pred eeEEEEc-cChhHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInG-fGrIGr~vlr~l~~~~~~~~evvaIn 101 (403)
.++.|.| .|.||+.+++.|.++. ..|+.+.
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g---~~V~~~~ 42 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAG---ARVHVCD 42 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCC---CEEEEEe
Confidence 5899999 9999999999999875 5666555
No 500
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=28.31 E-value=92 Score=28.50 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=23.3
Q ss_pred eeEEEEccCh-hHHHHHHHHHcCCCCCceEEEEe
Q 015637 69 LKVAINGFGR-IGRNFLRCWHGRKDSPLEVVAIN 101 (403)
Q Consensus 69 ikVaInGfGr-IGr~vlr~l~~~~~~~~evvaIn 101 (403)
-||.|+|.|. +|+.+++.|.++. ..|..+|
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g---~~V~v~~ 75 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRN---ATVTVCH 75 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCC---CEEEEEE
Confidence 5899999997 5998999998764 4554444
Done!