RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 015637
(403 letters)
>gnl|CDD|215572 PLN03096, PLN03096, glyceraldehyde-3-phosphate dehydrogenase A;
Provisional.
Length = 395
Score = 744 bits (1922), Expect = 0.0
Identities = 335/398 (84%), Positives = 363/398 (91%), Gaps = 3/398 (0%)
Query: 6 LSVAKSALQGNGKGFSEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAA 65
S AK +LQ KGFSEFSGL++S+++ FG++S + ++ SSS G R+
Sbjct: 1 FSAAKPSLQAGSKGFSEFSGLKSSSAVTFGKRSDSL---DFVVFATSAVSSSGGARRAVT 57
Query: 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEAD 125
+AK+KVAINGFGRIGRNFLRCWHGRKDSPL+VVAINDTGGVKQASHLLKYDSTLG F+AD
Sbjct: 58 EAKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDAD 117
Query: 126 VKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKK 185
VKPVG D ISVDGKVI+VVS+RNP+NLPWG+LGIDLVIEGTGVFVDREGAGKHIQAGAKK
Sbjct: 118 VKPVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKK 177
Query: 186 VLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 245
VLITAPGKGDIPTYVVGVNAD YK +PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT
Sbjct: 178 VLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 237
Query: 246 THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTP 305
THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLP LKGKLNGIALRVPTP
Sbjct: 238 THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTP 297
Query: 306 NVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSS 365
NVSVVDLVVQV KKTFAEEVNAAFR++A+ ELKGIL+VCDEPLVSVDFRCSDVSST+DSS
Sbjct: 298 NVSVVDLVVQVEKKTFAEEVNAAFRDAAEKELKGILAVCDEPLVSVDFRCSDVSSTIDSS 357
Query: 366 LTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 403
LT+VMGDDMVKV+AWYDNEWGYSQRVVDLADIVAN WK
Sbjct: 358 LTMVMGDDMVKVVAWYDNEWGYSQRVVDLADIVANKWK 395
>gnl|CDD|215131 PLN02237, PLN02237, glyceraldehyde-3-phosphate dehydrogenase B.
Length = 442
Score = 631 bits (1629), Expect = 0.0
Identities = 296/403 (73%), Positives = 334/403 (82%), Gaps = 6/403 (1%)
Query: 4 ATLSVAKSALQGNGKGFSEFSGLRNSASLPFGRKSSD-DFHSVIALQTSALGSSSSGYRK 62
AT + A + +EFSGLR S+ + F + + + F V+A Q + + S+ R
Sbjct: 12 ATTRLPSKASHKRLE-VAEFSGLRASSCVTFAKNAREASFFDVVASQLAPKVAGSTPVRG 70
Query: 63 VAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIF 122
AKLKVAINGFGRIGRNFLRCWHGRKDSPL+VV +ND+GGVK ASHLLKYDS LG F
Sbjct: 71 ET-VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTF 129
Query: 123 EADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAG 182
+ADVK V + ISVDGK I+VVSNR+P+ LPW +LGID+VIEGTGVFVD GAGKHIQAG
Sbjct: 130 KADVKIVDDETISVDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAG 189
Query: 183 AKKVLITAPGKG-DIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGIIK 240
AKKV+ITAP KG DIPTYVVGVN D Y + I+SNASCTTNCLAPFVKVLD++FGI+K
Sbjct: 190 AKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTTNCLAPFVKVLDEEFGIVK 249
Query: 241 GTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIAL 300
GTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV+LVLP LKGKLNGIAL
Sbjct: 250 GTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIAL 309
Query: 301 RVPTPNVSVVDLVVQVSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVS 359
RVPTPNVSVVDLVV V KK AE+VNAAFR++AD LKGIL+VCD PLVSVDFRCSDVS
Sbjct: 310 RVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILAVCDVPLVSVDFRCSDVS 369
Query: 360 STVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 402
ST+D+SLT+VMGDDMVKV+AWYDNEWGYSQRVVDLA +VA W
Sbjct: 370 STIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAAKW 412
>gnl|CDD|180962 PRK07403, PRK07403, glyceraldehyde-3-phosphate dehydrogenase;
Reviewed.
Length = 337
Score = 539 bits (1390), Expect = 0.0
Identities = 244/337 (72%), Positives = 279/337 (82%), Gaps = 3/337 (0%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
++VAINGFGRIGRNFLRCW GR++S LE+VAINDT + +HLLKYDS LG AD+
Sbjct: 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADIS- 60
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ I+V+GK I+ VS+RNP+NLPW + GIDL+IE TGVFV +EGA KHIQAGAKKVLI
Sbjct: 61 ADENSITVNGKTIKCVSDRNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLI 120
Query: 189 TAPGKG-DIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 246
TAPGKG DI TYVVGVN Y ++ IISNASCTTNCLAP KVL FGIIKGTMTTT
Sbjct: 121 TAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCLAPIAKVLHDNFGIIKGTMTTT 180
Query: 247 HSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPN 306
HSYTGDQR+LDASHRDLRRARAAA+NIVPTSTGAAKAVALV+P LKGKLNGIALRVPTPN
Sbjct: 181 HSYTGDQRILDASHRDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRVPTPN 240
Query: 307 VSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 366
VSVVDLVVQV K+T E+VN +++++ LKGIL D PLVS D+R +D SS VD+SL
Sbjct: 241 VSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDLPLVSSDYRGTDASSIVDASL 300
Query: 367 TLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 403
T+VMG DMVKVIAWYDNEWGYSQRVVDLA++VA WK
Sbjct: 301 TMVMGGDMVKVIAWYDNEWGYSQRVVDLAELVARKWK 337
>gnl|CDD|233453 TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate dehydrogenase, type
I. This model represents glyceraldehyde-3-phosphate
dehydrogenase (GAPDH), the enzyme responsible for the
interconversion of 1,3-diphosphoglycerate and
glyceraldehyde-3-phosphate, a central step in glycolysis
and gluconeogenesis. Forms exist which utilize NAD (EC
1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In
some species, NAD- and NADP- utilizing forms exist,
generally being responsible for reactions in the
anabolic and catabolic directions respectively. Two PFAM
models cover the two functional domains of this protein;
pfam00044 represents the N-terminal NAD(P)-binding
domain and pfam02800 represents the C-terminal catalytic
domain. An additional form of gap gene is found in gamma
proteobacteria and is responsible for the conversion of
erythrose-4-phosphate (E4P) to 4-phospho-erythronate in
the biosynthesis of pyridoxine. This pathway of
pyridoxine biosynthesis appears to be limited, however,
to a relatively small number of bacterial species
although it is prevalent among the gamma-proteobacteria.
This enzyme is described by TIGR001532. These sequences
generally score between trusted and noise to this GAPDH
model due to the close evolutionary relationship. There
exists the possiblity that some forms of GAPDH may be
bifunctional and act on E4P in species which make
pyridoxine and via hydroxythreonine and lack a separate
E4PDH enzyme (for instance, the GAPDH from Bacillus
stearothermophilus has been shown to posess a limited
E4PD activity as well as a robust GAPDH activity). There
are a great number of sequences in the databases which
score between trusted and noise to this model, nearly
all of them due to fragmentary sequences. It seems that
study of this gene has been carried out in many species
utilizing PCR probes which exclude the extreme ends of
the consenses used to define this model. The noise level
is set relative not to E4PD, but the next closest
outliers, the class II GAPDH's (found in archaea,
TIGR01546) and aspartate semialdehyde dehydrogenase
(ASADH, TIGR01296) both of which have highest-scoring
hits around -225 to the prior model [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 326
Score = 491 bits (1267), Expect = e-175
Identities = 199/327 (60%), Positives = 238/327 (72%), Gaps = 4/327 (1%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPV 129
KV INGFGRIGR LR + + LEVVAIND ++ ++LLKYDS G FE +V
Sbjct: 1 KVGINGFGRIGRLVLRAILEKPGNDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVT-A 59
Query: 130 GTDGISVDGK-VIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
DG+ V+GK VI V S R+P +LPW LG+D+VIE TG F D+E H++AGAKKVLI
Sbjct: 60 DEDGLVVNGKEVISVFSERDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLI 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHS 248
+AP KGD+ T V GVN D Y P E I+SNASCTTNCLAP KVLD+ FGI+ G MTT HS
Sbjct: 120 SAPSKGDVKTIVYGVNHDEYDPSERIVSNASCTTNCLAPLAKVLDEAFGIVSGLMTTVHS 179
Query: 249 YTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVS 308
YT DQ L+D H+DLRRARAAALNI+PTSTGAAKA+ VLP L GKL G+A+RVPTPNVS
Sbjct: 180 YTNDQNLVDGPHKDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTPNVS 239
Query: 309 VVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTL 368
+VDLVV + K EEVNAA +E+A+ ELKG+L ++ LVS DF S SS VD++ T
Sbjct: 240 LVDLVVNLEKDVTVEEVNAALKEAAEGELKGVLGYTEDELVSSDFIGSPYSSIVDATATK 299
Query: 369 VMGDD--MVKVIAWYDNEWGYSQRVVD 393
V G +VKV+AWYDNEWGYS RVVD
Sbjct: 300 VTGLGDSLVKVVAWYDNEWGYSNRVVD 326
>gnl|CDD|223135 COG0057, GapA, Glyceraldehyde-3-phosphate
dehydrogenase/erythrose-4-phosphate dehydrogenase
[Carbohydrate transport and metabolism].
Length = 335
Score = 482 bits (1243), Expect = e-171
Identities = 198/337 (58%), Positives = 245/337 (72%), Gaps = 3/337 (0%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
+KVAINGFGRIGR R R +EVVAIND +HLLKYDS G F+ +V+
Sbjct: 1 MIKVAINGFGRIGRLVARAALERDGD-IEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVE 59
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQA-GAKKV 186
D + V+GK I+V++ R+P NLPW DLG+D+V+E TG F RE A KH++A GAKKV
Sbjct: 60 VKD-DALVVNGKGIKVLAERDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKV 118
Query: 187 LITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 246
LI+APGK D+ T V GVN + Y I+SNASCTTNCLAP KVL+ FGI KG MTT
Sbjct: 119 LISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLAPVAKVLNDAFGIEKGLMTTV 178
Query: 247 HSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPN 306
H+YT DQ+L+D H+DLRRARAAALNI+PTSTGAAKAV LVLP LKGKL G+A+RVPTPN
Sbjct: 179 HAYTNDQKLVDGPHKDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPTPN 238
Query: 307 VSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 366
VSVVDL V++ K+ EE+NAA + +++ LKGIL ++PLVS DF SS D+S
Sbjct: 239 VSVVDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPHSSIFDASA 298
Query: 367 TLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 403
T+V+G ++VK++AWYDNEWGYS RVVDL +VA K
Sbjct: 299 TIVLGGNLVKLVAWYDNEWGYSNRVVDLLAMVAKALK 335
>gnl|CDD|236079 PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase;
Validated.
Length = 343
Score = 462 bits (1191), Expect = e-163
Identities = 192/337 (56%), Positives = 243/337 (72%), Gaps = 4/337 (1%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
K KVAINGFGRIGR R K+S E+VAIN + + +HL+KYD+ G F+ V+
Sbjct: 2 KTKVAINGFGRIGRMVFR--KAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVE 59
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
D + VDGK I++++NR+P LPW DLGID+VIE TG F +E A H++AGAKKV+
Sbjct: 60 AFE-DHLLVDGKKIRLLNNRDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVI 118
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 246
+TAPGK + T VVGVN D ++ IISNASCTTNCLAP VKVLD++FGI G MTT
Sbjct: 119 LTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLAPVVKVLDEQFGIENGLMTTV 178
Query: 247 HSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPN 306
H+YT DQ+ +D H+DLRRARA +I+PT+TGAAKA+A VLP L GKL+G+ALRVPTPN
Sbjct: 179 HAYTNDQKNIDNPHKDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPN 238
Query: 307 VSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 366
VS+VDLVV V + EE+N AF+ +A+ LKGIL +EPLVS+DF + S+ +D
Sbjct: 239 VSLVDLVVDVKRDVTVEEINEAFKTAANGALKGILEFSEEPLVSIDFNTNTHSAIIDGLS 298
Query: 367 TLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 403
T+VMGD VKV+AWYDNEWGYS RVVDL +VA+
Sbjct: 299 TMVMGDRKVKVLAWYDNEWGYSCRVVDLVTLVADELA 335
>gnl|CDD|177912 PLN02272, PLN02272, glyceraldehyde-3-phosphate dehydrogenase.
Length = 421
Score = 345 bits (887), Expect = e-116
Identities = 178/406 (43%), Positives = 242/406 (59%), Gaps = 20/406 (4%)
Query: 2 ASATLSVAKSALQGNGKGFSEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYR 61
+ + S + S+ S + S+SL F SS + +LQ+ S +
Sbjct: 12 TAPAAAARGSDFSSSSSDPSKVSSVGFSSSLSFSGSSSG---ASSSLQSC-SARSVQPIK 67
Query: 62 KVAAQA-----------KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQA 109
A +A K K+ INGFGRIGR LR R D +EVVA+ND K
Sbjct: 68 ATATEAPPAVLKSSSSGKTKIGINGFGRIGRLVLRIATSRDD--IEVVAVNDPFIDAKYM 125
Query: 110 SHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVF 169
+++ KYDST G F+ + V + ++GK I+V S R+P +PWGD G + V+E +GVF
Sbjct: 126 AYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKRDPAEIPWGDFGAEYVVESSGVF 185
Query: 170 VDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFV 229
E A H++ GAKKV+I+AP D P +VVGVN YKP+ I+SNASCTTNCLAP
Sbjct: 186 TTVEKASAHLKGGAKKVVISAP-SADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLA 244
Query: 230 KVLDQKFGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVL 288
KV+ ++FGI++G MTT H+ T Q+ +D S +D R R A+ NI+P+STGAAKAV VL
Sbjct: 245 KVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVL 304
Query: 289 PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPL 348
P L GKL G+A RVPTPNVSVVDL ++ K E+V AA + +++ LKGIL DE +
Sbjct: 305 PELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDEDV 364
Query: 349 VSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDL 394
VS DF SS D+ + + +K+++WYDNEWGYS RV+DL
Sbjct: 365 VSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDL 410
>gnl|CDD|173322 PTZ00023, PTZ00023, glyceraldehyde-3-phosphate dehydrogenase;
Provisional.
Length = 337
Score = 334 bits (858), Expect = e-113
Identities = 157/336 (46%), Positives = 212/336 (63%), Gaps = 7/336 (2%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADVKP 128
K+ INGFGRIGR R R+D +EVVAIND + +LLKYDS G A+V
Sbjct: 4 KLGINGFGRIGRLVFRAALERED--VEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSV 61
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ + K + V ++P +PWG G+D+V E TGVF+ +E A H++ GAKKV++
Sbjct: 62 -TDGFLMIGSKKVHVFFEKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIM 120
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHS 248
+AP K D P YV+GVN Y + I+SNASCTTNCLAP KV++ KFGI++G MTT H+
Sbjct: 121 SAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLAPLAKVVNDKFGIVEGLMTTVHA 180
Query: 249 YTGDQRLLDASHR---DLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTP 305
T +Q +D + D R R A +NI+P STGAAKAV V+P L GKL G+A RVP P
Sbjct: 181 STANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPVP 240
Query: 306 NVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSS 365
+VSVVDL +++K EE+ AA +++A+ LKGIL D+ +VS DF SS D
Sbjct: 241 DVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPLKGILGYTDDEVVSSDFVHDKRSSIFDVK 300
Query: 366 LTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 401
+ + D VK+++WYDNEWGYS R++DLA +
Sbjct: 301 AGIALNDTFVKLVSWYDNEWGYSNRLLDLAHYITQK 336
>gnl|CDD|184122 PRK13535, PRK13535, erythrose 4-phosphate dehydrogenase;
Provisional.
Length = 336
Score = 323 bits (829), Expect = e-109
Identities = 144/328 (43%), Positives = 204/328 (62%), Gaps = 5/328 (1%)
Query: 69 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADV 126
++VAINGFGRIGRN LR + GR+ + VVAIN+ + +HLLKYD++ G F DV
Sbjct: 2 IRVAINGFGRIGRNVLRALYESGRRAE-ITVVAINELADAEGMAHLLKYDTSHGRFAWDV 60
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
+ D + V I+++ R+ +LPW +LG+D+V++ TGV+ RE HI AGAKKV
Sbjct: 61 R-QERDQLFVGDDAIRLLHERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKV 119
Query: 187 LITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 245
L + PG D+ T V GVN D + + I+SNASCTTNC+ P +K+LD FGI GT+TT
Sbjct: 120 LFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNCIIPVIKLLDDAFGIESGTVTT 179
Query: 246 THSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTP 305
HS DQ+++DA H DLRR RAA+ +I+P T A + + P + I++RVPT
Sbjct: 180 IHSAMNDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRVPTI 239
Query: 306 NVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSS 365
NV+ +DL V V K EVN +++A GI+ + PLVS+DF S+ VD +
Sbjct: 240 NVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTELPLVSIDFNHDPHSAIVDGT 299
Query: 366 LTLVMGDDMVKVIAWYDNEWGYSQRVVD 393
T V G ++K + W DNEWG++ R++D
Sbjct: 300 QTRVSGAHLIKTLVWCDNEWGFANRMLD 327
>gnl|CDD|169599 PRK08955, PRK08955, glyceraldehyde-3-phosphate dehydrogenase;
Validated.
Length = 334
Score = 320 bits (822), Expect = e-108
Identities = 153/334 (45%), Positives = 209/334 (62%), Gaps = 8/334 (2%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEADV 126
+KV INGFGRIGR LR + LE V IND G +HLL++DS G + +V
Sbjct: 2 TIKVGINGFGRIGRLALRAAWDWPE--LEFVQINDPAGDAATLAHLLEFDSVHGRWHHEV 59
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
G D I ++GK I+ N+ + W G D+VIE +GV + ++ G K+V
Sbjct: 60 TAEG-DAIVINGKRIRTTQNKAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRV 116
Query: 187 LITAPGKGD-IPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMT 244
++TAP K + + V+GVN + P PI++ ASCTTNCLAP VKV+ +K GI G+MT
Sbjct: 117 VVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCLAPVVKVIHEKLGIKHGSMT 176
Query: 245 TTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPT 304
T H T Q +LDA H+DLRRARA ++++PT+TG+A A+ + P LKGKLNG A+RVP
Sbjct: 177 TIHDLTNTQTILDAPHKDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPL 236
Query: 305 PNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDS 364
N S+ D V +V + T EEVNA +E+A+ ELKGIL + PLVS+D++ SS VD+
Sbjct: 237 ANASLTDCVFEVERDTTVEEVNALLKEAAEGELKGILGYEERPLVSIDYKTDPRSSIVDA 296
Query: 365 SLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIV 398
T+V+ VK+ AWYDNEWGY+ R +LA V
Sbjct: 297 LSTMVVNGTQVKLYAWYDNEWGYANRTAELARKV 330
>gnl|CDD|130595 TIGR01532, E4PD_g-proteo, erythrose-4-phosphate dehydrogenase.
This model represents the small clade of dehydrogenases
in gamma-proteobacteria which utilize NAD+ to oxidize
erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a
precursor for the de novo synthesis of pyridoxine via
4-hydroxythreonine and D-1-deoxyxylulose. This enzyme
activity appears to have evolved from
glyceraldehyde-3-phosphate dehydrogenase, whose
substrate differs only in the lack of one carbon
relative to E4P. Accordingly, this model is very close
to the corresponding models for GAPDH, and those
sequences which hit above trusted here invariably hit
between trusted and noise to the GAPDH model
(TIGR01534). Similarly, it may be found that there are
species outside of the gamma proteobacteria which
synthesize pyridoxine and have more than one aparrent
GAPDH gene of which one may have E4PD activity - this
may necessitate a readjustment of these models.
Alternatively, some of the GAPDH enzymes may prove to be
bifunctional in certain species [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pyridoxine].
Length = 325
Score = 310 bits (795), Expect = e-104
Identities = 147/326 (45%), Positives = 203/326 (62%), Gaps = 3/326 (0%)
Query: 70 KVAINGFGRIGRNFLRCWHGR-KDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+VAINGFGRIGRN LR + + + + VVAIN+ +HLLKYD++ G F +V+
Sbjct: 1 RVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVR- 59
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
D + V I+V+ R+ +LPW +LG+DLV++ TGV+ RE HI AGAKKVL
Sbjct: 60 QDRDQLFVGDDAIRVLHERSLQSLPWRELGVDLVLDCTGVYGSREHGEAHIAAGAKKVLF 119
Query: 189 TAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTH 247
+ PG D+ T V GVN D + + I+SNASCTTNC+ P +K+LD +GI GT+TT H
Sbjct: 120 SHPGASDLDATIVYGVNQDQLRAEHRIVSNASCTTNCIVPVIKLLDDAYGIESGTITTIH 179
Query: 248 SYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNV 307
S DQ+++DA H DLRR RAA+ +I+P T A + P + IA+RVPT NV
Sbjct: 180 SAMNDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGIERFFPQFNDRFEAIAVRVPTVNV 239
Query: 308 SVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLT 367
+ +DL V V K A EVN +++A L+GI+ + PLVSVDF S+ VD + T
Sbjct: 240 TAIDLSVTVKKPVKANEVNLLLQKAAQGALRGIVDYTELPLVSVDFNHDPHSAIVDGTQT 299
Query: 368 LVMGDDMVKVIAWYDNEWGYSQRVVD 393
V G +VK + W DNEWG++ R++D
Sbjct: 300 RVSGAHLVKTLVWCDNEWGFANRMLD 325
>gnl|CDD|185323 PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase A;
Provisional.
Length = 331
Score = 300 bits (769), Expect = e-100
Identities = 162/327 (49%), Positives = 220/327 (67%), Gaps = 5/327 (1%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R R D +E+VAIND +++LKYDST G F+ V+
Sbjct: 3 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE- 59
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + V+GK I+V + R+P NL W ++G+D+V E TG+F+ E A KHI AGAKKV++
Sbjct: 60 VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHS 248
T P K + P +V G N D Y + I+SNASCTTNCLAP KV++ FGII+G MTT H+
Sbjct: 120 TGPSKDNTPMFVKGANFDKYAGQD-IVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 178
Query: 249 YTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNV 307
T Q+ +D SH+D R R A+ NI+P+STGAAKAV VLP L GKL G+A RVPTPNV
Sbjct: 179 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 238
Query: 308 SVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLT 367
SVVDL V++ K E++ AA + +A+ E+KG+L ++ +VS DF +S D+
Sbjct: 239 SVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAG 298
Query: 368 LVMGDDMVKVIAWYDNEWGYSQRVVDL 394
+ + D+ VK+++WYDNE GYS +V+DL
Sbjct: 299 IALNDNFVKLVSWYDNETGYSNKVLDL 325
>gnl|CDD|165999 PLN02358, PLN02358, glyceraldehyde-3-phosphate dehydrogenase.
Length = 338
Score = 294 bits (754), Expect = 1e-97
Identities = 161/333 (48%), Positives = 220/333 (66%), Gaps = 6/333 (1%)
Query: 65 AQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFE 123
A K+++ INGFGRIGR R R D +E+VA+ND + +++ KYDS G ++
Sbjct: 2 ADKKIRIGINGFGRIGRLVARVVLQRDD--VELVAVNDPFITTEYMTYMFKYDSVHGQWK 59
Query: 124 ADVKPVGTDGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAG 182
V D + G K + V RNP ++PWG+ G D V+E TGVF D++ A H++ G
Sbjct: 60 HHELKVKDDKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGG 119
Query: 183 AKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGT 242
AKKV+I+AP K D P +VVGVN YK D I+SNASCTTNCLAP KV++ +FGI++G
Sbjct: 120 AKKVVISAPSK-DAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGL 178
Query: 243 MTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALR 301
MTT HS T Q+ +D S +D R RAA+ NI+P+STGAAKAV VLP+L GKL G++ R
Sbjct: 179 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFR 238
Query: 302 VPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSST 361
VPT +VSVVDL V++ K +E+ A +E ++ +LKGIL ++ +VS DF + SS
Sbjct: 239 VPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSI 298
Query: 362 VDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDL 394
D+ + + D VK+++WYDNEWGYS RVVDL
Sbjct: 299 FDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDL 331
>gnl|CDD|185614 PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-phosphate
dehydrogenase; Provisional.
Length = 361
Score = 295 bits (756), Expect = 1e-97
Identities = 163/351 (46%), Positives = 224/351 (63%), Gaps = 18/351 (5%)
Query: 67 AKLKVAINGFGRIGRNFLR--CWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFE 123
A +KV INGFGRIGR + C G + ++VVA+ D + + ++ +KYD+ G +
Sbjct: 2 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPK 61
Query: 124 ADVKPVGT-------DGISVDGKVIQVV-SNRNPVNLPWGDLGIDLVIEGTGVFVDREGA 175
V+ + D + V+G I+ V + RNP +LPWG LG+D VIE TG+F D+ A
Sbjct: 62 YTVETTKSSPSVKTDDVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAA 121
Query: 176 GKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQ 234
H++ GAKKV+I+AP G T V+GVN Y P E ++SNASCTTNCLAP V VL +
Sbjct: 122 EGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEHHVVSNASCTTNCLAPIVHVLTK 181
Query: 235 K-FGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPALK 292
+ FGI G MTT HSYT Q+ +D S +D R RAAA+NI+P++TGAAKAV +V+P+ K
Sbjct: 182 EGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTK 241
Query: 293 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 352
GKL G++ RVPTP+VSVVDL + ++ T +E++AA + ++ +KGIL D+ LVS D
Sbjct: 242 GKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQTYMKGILGFTDDELVSAD 301
Query: 353 FRCSDVSSTVDSSLTLVMG----DDMVKVIAWYDNEWGYSQRVVDLADIVA 399
F + SS DS TL K+++WYDNEWGYS RVVDL +A
Sbjct: 302 FINDNRSSIYDSKATLQNNLPGERRFFKIVSWYDNEWGYSHRVVDLVRYMA 352
>gnl|CDD|236219 PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase;
Reviewed.
Length = 477
Score = 287 bits (737), Expect = 4e-93
Identities = 143/342 (41%), Positives = 198/342 (57%), Gaps = 15/342 (4%)
Query: 71 VAINGFGRIGRNFLR--CWHGRKDSPLEVVAINDTGG-----VKQASHLLKYDSTLGIFE 123
V + GFGRIGR R + L + AI G K+AS LL+ DS G F
Sbjct: 130 VVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRAS-LLRRDSVHGPFN 188
Query: 124 ADVKP-VGTDGISVDGKVIQVVSNRNPVNLPWGDLGID--LVIEGTGVFVDREGAGKHIQ 180
+ + I +G IQV+ +P + + GI+ LV++ TG + D EG +H++
Sbjct: 189 GTITVDEENNAIIANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLK 248
Query: 181 A-GAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGII 239
+ G KVL+TAPGKGDI V GVN ++ I+S ASCTTN + P +K ++ K+GI+
Sbjct: 249 SKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIVSAASCTTNAITPVLKAVNDKYGIV 308
Query: 240 KGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIA 299
G + T HSYT DQ L+D H+ RR R+A LN+V T TGAAKAVA LP L GKL G A
Sbjct: 309 NGHVETVHSYTNDQNLIDNYHKGDRRGRSAPLNMVITETGAAKAVAKALPELAGKLTGNA 368
Query: 300 LRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRE-SADNELKGILSVCDEP-LVSVDFRCSD 357
+RVPTPNVS+ L + + K+T EE+N R+ S + L+ + D +VS DF S
Sbjct: 369 IRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQNQIDYTDSTEVVSSDFVGSR 428
Query: 358 VSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 399
+ VDS T+V G+ V + WYDNE+GYS +VV + + +A
Sbjct: 429 HAGVVDSQATIVNGNRAV-LYVWYDNEFGYSCQVVRVMEQMA 469
>gnl|CDD|217235 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase,
C-terminal domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
C-terminal domain is a mixed alpha/antiparallel beta
fold.
Length = 157
Score = 262 bits (672), Expect = 1e-87
Identities = 99/157 (63%), Positives = 117/157 (74%)
Query: 225 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV 284
LAP KVL+ FGI KG MTT H+YT DQ+L+D SH+DLRR RAAA NI+PTSTGAAKAV
Sbjct: 1 LAPLAKVLNDNFGIEKGLMTTVHAYTADQKLVDPSHKDLRRGRAAAPNIIPTSTGAAKAV 60
Query: 285 ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVC 344
LVLP LKGKL G+A RVPTPNVSVVDL V++ K EEVNAA +E+A+ LKGIL
Sbjct: 61 GLVLPELKGKLTGMAFRVPTPNVSVVDLTVELEKPVTVEEVNAALKEAAEGALKGILGYT 120
Query: 345 DEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWY 381
+EPLVS DF SS D+ T+V+ + VKV+AWY
Sbjct: 121 EEPLVSSDFVGDPHSSIFDAKATIVLNGNFVKVVAWY 157
>gnl|CDD|215675 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD
binding domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
N-terminal domain is a Rossmann NAD(P) binding fold.
Length = 148
Score = 227 bits (582), Expect = 2e-74
Identities = 80/151 (52%), Positives = 106/151 (70%), Gaps = 3/151 (1%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR LR + D LEVVAIND + ++LLKYDS G F+ +V+
Sbjct: 1 IKVGINGFGRIGRLVLRAALAQDD--LEVVAINDLTDPETLAYLLKYDSVHGRFDGEVEV 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
DG+ V+GK I+V + R+P LPWG+LG+D+V+E TGVF E A H++AGAKKV+I
Sbjct: 59 DE-DGLIVNGKKIKVFAERDPAELPWGELGVDIVVESTGVFTTAEKAEAHLKAGAKKVII 117
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNAS 219
+AP K D PT+V GVN + Y P++ I+SNAS
Sbjct: 118 SAPAKDDDPTFVYGVNHEDYDPEDDIVSNAS 148
>gnl|CDD|214851 smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD
binding domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
N-terminal domain is a Rossmann NAD(P) binding fold.
Length = 149
Score = 214 bits (547), Expect = 5e-69
Identities = 83/152 (54%), Positives = 105/152 (69%), Gaps = 3/152 (1%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR LR R D +EVVAIND + ++LLKYDS G F V+
Sbjct: 1 IKVGINGFGRIGRLVLRAALERPD--VEVVAINDLTDPEYLAYLLKYDSVHGRFPGTVE- 57
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V DG+ V+GK I+V + R+P NLPWG+LG+D+V+E TG F RE A H++AGAKKV+I
Sbjct: 58 VEGDGLVVNGKAIKVFAERDPANLPWGELGVDIVVECTGGFTTREKASAHLKAGAKKVII 117
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASC 220
+AP K PT+V GVN D Y ++ IISNASC
Sbjct: 118 SAPSKDADPTFVYGVNHDEYDGEDHIISNASC 149
>gnl|CDD|173546 PTZ00353, PTZ00353, glycosomal glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 342
Score = 135 bits (340), Expect = 3e-36
Identities = 93/338 (27%), Positives = 164/338 (48%), Gaps = 19/338 (5%)
Query: 71 VAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPV 129
V INGFG +G+ L + D + VVA+ND + +++L+ +S L + V
Sbjct: 5 VGINGFGPVGKAVL--FASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRV 62
Query: 130 GTDGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ I ++G + I+V + + V + W D G+ V+E TG++ R H+ GAK V +
Sbjct: 63 VGEQIVLNGTQKIRVSAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFV 122
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHS 248
A D PT + G N + P+ + LAP ++ L + +G+ + + T H
Sbjct: 123 -AGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALAPVIRALHEVYGVEECSYTAIHG 181
Query: 249 YTGDQRLLDA---SHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTP 305
Q + A + +D R+ R A I P A+ V +LP L G+++G A +VP
Sbjct: 182 -MQPQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVPVK 240
Query: 306 NVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF-----RCSDVSS 360
+D++V+ + E V++A E+A + L G+L + ++SVD C D +S
Sbjct: 241 KGCAIDMLVRTKQPVSKEVVDSALAEAASDRLNGVLCISKRDMISVDCIPNGKLCYDATS 300
Query: 361 TVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIV 398
+ SS ++ K++ W+D E Y+ R++ L +
Sbjct: 301 S--SSSR---EGEVHKMVLWFDVECYYAARLLSLVKQL 333
>gnl|CDD|223214 COG0136, Asd, Aspartate-semialdehyde dehydrogenase [Amino acid
transport and metabolism].
Length = 334
Score = 36.8 bits (86), Expect = 0.016
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 195 DIPTYVVGVNADA---YKPDEPIISNASCTTNCLAPFVKVLDQKFGI 238
D+P V VN + Y+ II+N +C+T L +K L FGI
Sbjct: 105 DVPLVVPEVNPEHLIDYQKRGFIIANPNCSTIQLVLALKPLHDAFGI 151
>gnl|CDD|237845 PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase;
Provisional.
Length = 334
Score = 35.1 bits (82), Expect = 0.050
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 195 DIPTYVVGVNADAYK--PDEPIISNASCTTNCLAPFVKVLDQKFGI 238
D+P V VN +A + II+N +C+T + +K L GI
Sbjct: 102 DVPLVVPEVNPEALAEHRKKGIIANPNCSTIQMVVALKPLHDAAGI 147
>gnl|CDD|233347 TIGR01296, asd_B, aspartate-semialdehyde dehydrogenase
(peptidoglycan organisms). Two closely related families
of aspartate-semialdehyde dehydrogenase are found. They
differ by a deep split in phylogenetic and percent
identity trees and in gap patterns. This model
represents a branch more closely related to the USG-1
protein than to the other aspartate-semialdehyde
dehydrogenases represented in model TIGR00978 [Amino
acid biosynthesis, Aspartate family].
Length = 338
Score = 34.0 bits (78), Expect = 0.11
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 158 GIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD--IPTYVVGVNA--DAYKPDEP 213
GID+ + G V +E A K +AG + T+ + D +P V VN +
Sbjct: 61 GIDIALFSAGGSVSKEFAPKAAKAGVIVIDNTSAFRMDPDVPLVVPEVNFEDLKEFNPKG 120
Query: 214 IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTG 251
II+N +C+T + +K L + I + ++T + +G
Sbjct: 121 IIANPNCSTIQMVVVLKPLHDEAKIKRVVVSTYQAVSG 158
>gnl|CDD|215163 PLN02289, PLN02289, ribulose-bisphosphate carboxylase small
chain.
Length = 176
Score = 32.9 bits (75), Expect = 0.14
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 1 MASATLS---VAKSALQGNGKGFSEFSGLRNSASLPFGRKSSDDFHSV 45
MAS+ LS VA S Q + F+GL++SA+ P RK+++D S+
Sbjct: 1 MASSMLSSAAVATSPAQATM--VAPFTGLKSSAAFPVTRKANNDITSI 46
>gnl|CDD|201778 pfam01408, GFO_IDH_MocA, Oxidoreductase family, NAD-binding
Rossmann fold. This family of enzymes utilise NADP or
NAD. This family is called the GFO/IDH/MOCA family in
swiss-prot.
Length = 120
Score = 30.6 bits (70), Expect = 0.47
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG 104
L+V I G G+IGR LR + E+V I D
Sbjct: 1 LRVGIVGAGKIGRRHLRALN-ESQDGAELVGILDPD 35
>gnl|CDD|177348 PHA02106, PHA02106, hypothetical protein.
Length = 91
Score = 28.9 bits (64), Expect = 1.4
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 376 KVIAWYDNEWGYSQRVV 392
K + WY+ EW Y + +V
Sbjct: 10 KAVKWYEQEWYYGKWIV 26
>gnl|CDD|221537 pfam12338, RbcS, Ribulose-1,5-bisphosphate carboxylase small
subunit. This domain family is found in eukaryotes,
and is approximately 40 amino acids in length. The
family is found in association with pfam00101. There is
a conserved APF sequence motif. There are two
completely conserved residues (L and P) that may be
functionally important. This family is the small
subunit of ribulose-1,5-bisphosphate.
Length = 43
Score = 27.0 bits (60), Expect = 2.4
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 1 MASATLSVAKSALQGNGKGFSEFSGLRNSASLPFGRKSSDD 41
M+SA ++ S Q + + F+GL+++A+ P RK+++D
Sbjct: 5 MSSAAVATRASPAQASM--VAPFTGLKSTAAFPVTRKTNND 43
>gnl|CDD|147328 pfam05095, DUF687, Protein of unknown function (DUF687). This
family contains several uncharacterized Chlamydia
proteins.
Length = 542
Score = 29.3 bits (66), Expect = 4.3
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 253 QRLLDASHRDLRRARAAALNIVPTSTGAAKAVA--LVLPALKGKLNGIALRVP 303
R L S + RR + L S GA V LVL G LNGI+L++P
Sbjct: 415 LRRLTGSTLEQRRVVRSQLAARRGSIGALSTVCGGLVLALFIGILNGISLQLP 467
>gnl|CDD|184467 PRK14034, PRK14034, citrate synthase; Provisional.
Length = 372
Score = 29.0 bits (65), Expect = 5.5
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 27/89 (30%)
Query: 40 DDFHSVIALQT--SALG---------SSSSGYRK-VAAQAKLKVAINGFGRIGR------ 81
H + L+T S LG + YRK V QAK+ + F RI +
Sbjct: 86 KKVHPMSVLRTAISMLGLYDEEAEIMDEEANYRKAVRLQAKVPTIVAAFSRIRKGLDPVE 145
Query: 82 ---------NFLRCWHGRKDSPLEVVAIN 101
NFL +G + +EV A N
Sbjct: 146 PRKDLSLAANFLYMLNGEEPDEVEVEAFN 174
>gnl|CDD|181541 PRK08727, PRK08727, hypothetical protein; Validated.
Length = 233
Score = 28.3 bits (63), Expect = 6.8
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 265 RARAAALNIVPTSTGAAKAVALVLPALKGKL 295
RARAA + ++ T+ +ALVLP L+ +L
Sbjct: 121 RARAAGITLLYTARQMPDGLALVLPDLRSRL 151
>gnl|CDD|226935 COG4569, MhpF, Acetaldehyde dehydrogenase (acetylating) [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 310
Score = 28.4 bits (63), Expect = 7.4
Identities = 41/167 (24%), Positives = 62/167 (37%), Gaps = 26/167 (15%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
K KVAI G G IG + + R LE+ + G+ S L + LG
Sbjct: 4 KRKVAIIGSGNIGTDLMIKIL-RHGQHLEMAVMV---GIDPQSDGLARAARLG------- 52
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
V T V G +N+P IDLV + T + A +AG + +
Sbjct: 53 -VATTHEGVIGL----------LNMP-EFADIDLVFDATSAGAHVKNAAALAEAGIRLID 100
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQ 234
+T G P V VN + + D ++ +C P V + +
Sbjct: 101 LTPAAIG--PYVVPVVNLEEHV-DALNVNMVTCGGQATIPIVAAVSR 144
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA
oxidases (AXO) catalyze the first set in the peroxisomal
fatty acid beta-oxidation, the alpha,beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. In a second oxidative
half-reaction, the reduced FAD is reoxidized by
molecular oxygen. AXO is generally a homodimer, but it
has been reported to form a different type of oligomer
in yeast. There are several subtypes of AXO's, based on
substrate specificity. Palmitoyl-CoA oxidase acts on
straight-chain fatty acids and prostanoids; whereas, the
closely related Trihydroxycoprostanoly-CoA oxidase has
the greatest activity for 2-methyl branched side chains
of bile precursors. Pristanoyl-CoA oxidase, acts on
2-methyl branched fatty acids. AXO has an additional
domain, C-terminal to the region with similarity to
acyl-CoA dehydrogenases, which is included in this
alignment.
Length = 610
Score = 28.4 bits (64), Expect = 7.7
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 83 FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTD 132
R D P +++A+ ++ G S K LG+F +K +GTD
Sbjct: 70 VERMGELMADDPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTD 119
>gnl|CDD|215144 PLN02256, PLN02256, arogenate dehydrogenase.
Length = 304
Score = 28.1 bits (63), Expect = 8.0
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 33 PFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIG----RNFLRCWH 88
P R+ I S ++ KLK+ I GFG G + F++ H
Sbjct: 2 PLSRRPRSLRVRAIDA-AQPFDYESRLQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH 60
>gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members
of this protein family are MshC,
l-cysteine:1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an
enzyme that uses ATP to ligate a Cys residue to a
mycothiol precursor molecule, in the second to last step
in mycothiol biosynthesis. This enzyme shows
considerable homology to Cys--tRNA ligases, and many
instances are misannotated as such. Mycothiol is found
in Mycobacterium tuberculosis, Corynebacterium
glutamicum, Streptomyces coelicolor, and various other
members of the Actinobacteria. Mycothiol is an analog to
glutathione [Biosynthesis of cofactors, prosthetic
groups, and carriers, Glutathione and analogs].
Length = 411
Score = 28.2 bits (63), Expect = 9.3
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 252 DQRLLDASHRDLRRARAAALNIVPTS--TGAAKAVALVLPALKGKL-NGIALRVPTP 305
D R L S DL R AL ++P GA +++ V+ ++ L +G A V P
Sbjct: 98 DWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVVEMVEKLLASGAAYIVEGP 154
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.384
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,069,821
Number of extensions: 1964537
Number of successful extensions: 1765
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1706
Number of HSP's successfully gapped: 44
Length of query: 403
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 304
Effective length of database: 6,546,556
Effective search space: 1990153024
Effective search space used: 1990153024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.7 bits)