Query 015638
Match_columns 403
No_of_seqs 171 out of 811
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:11:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015638.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015638hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2761 START domain-containin 100.0 1.5E-43 3.2E-48 331.1 23.4 208 83-293 4-218 (219)
2 cd08870 START_STARD2_7-like Li 100.0 6.5E-40 1.4E-44 307.5 26.6 199 86-290 2-209 (209)
3 cd08910 START_STARD2-like Lipi 100.0 3.1E-39 6.7E-44 303.3 24.9 199 85-290 3-207 (207)
4 cd08871 START_STARD10-like Lip 100.0 1.3E-37 2.7E-42 293.9 26.7 199 85-293 5-206 (222)
5 cd08911 START_STARD7-like Lipi 100.0 9.6E-38 2.1E-42 292.9 24.2 183 105-290 19-207 (207)
6 cd08904 START_STARD6-like Lipi 100.0 3.7E-35 8.1E-40 275.6 25.1 193 87-288 6-204 (204)
7 cd08868 START_STARD1_3_like Ch 100.0 1.8E-33 4E-38 263.1 23.5 189 89-289 11-207 (208)
8 cd08872 START_STARD11-like Cer 100.0 4.7E-33 1E-37 266.5 25.0 195 88-289 8-226 (235)
9 cd08867 START_STARD4_5_6-like 100.0 1.4E-32 3E-37 256.9 25.1 190 89-287 8-205 (206)
10 cd08906 START_STARD3-like Chol 100.0 1.2E-32 2.7E-37 259.2 23.5 191 88-289 10-208 (209)
11 cd08903 START_STARD5-like Lipi 100.0 4.1E-32 8.9E-37 255.2 25.8 192 89-289 8-207 (208)
12 smart00234 START in StAR and p 100.0 2.5E-32 5.5E-37 252.5 23.5 181 105-290 17-203 (206)
13 cd08902 START_STARD4-like Lipi 100.0 5.6E-32 1.2E-36 251.8 21.0 176 105-288 21-202 (202)
14 PF01852 START: START domain; 100.0 1.1E-30 2.3E-35 240.9 25.6 181 105-292 17-205 (206)
15 cd08905 START_STARD1-like Chol 100.0 2.7E-31 5.9E-36 249.8 21.4 191 87-288 9-207 (209)
16 cd00177 START Lipid-binding ST 100.0 6.3E-29 1.4E-33 224.1 24.7 175 107-287 15-192 (193)
17 cd08869 START_RhoGAP C-termina 100.0 4.2E-29 9.1E-34 232.8 23.2 183 92-288 7-195 (197)
18 cd08874 START_STARD9-like C-te 100.0 3.7E-29 8.1E-34 235.2 22.6 166 105-277 20-194 (205)
19 cd08876 START_1 Uncharacterize 100.0 6.4E-28 1.4E-32 221.8 23.6 176 106-288 16-195 (195)
20 cd08873 START_STARD14_15-like 100.0 1.2E-27 2.6E-32 228.8 23.1 191 86-291 39-232 (235)
21 cd08877 START_2 Uncharacterize 100.0 1.1E-27 2.4E-32 225.2 21.1 179 105-289 20-214 (215)
22 cd08914 START_STARD15-like Lip 100.0 2.3E-27 5.1E-32 226.7 21.4 174 106-292 55-234 (236)
23 cd08913 START_STARD14-like Lip 100.0 6E-27 1.3E-31 224.9 22.0 163 106-278 58-227 (240)
24 cd08907 START_STARD8-like C-te 99.9 2.2E-26 4.7E-31 214.9 22.3 184 89-287 12-202 (205)
25 cd08909 START_STARD13-like C-t 99.9 3.9E-25 8.4E-30 207.9 24.2 171 106-285 26-200 (205)
26 cd08908 START_STARD12-like C-t 99.9 6.8E-25 1.5E-29 206.1 22.0 183 89-284 12-198 (204)
27 PLN00188 enhanced disease resi 99.9 5.9E-25 1.3E-29 234.2 20.9 183 105-293 196-392 (719)
28 KOG1739 Serine/threonine prote 99.7 6.7E-17 1.5E-21 164.9 11.5 181 105-289 401-602 (611)
29 cd08875 START_ArGLABRA2_like C 99.5 1.6E-12 3.4E-17 124.3 18.6 195 87-287 7-228 (229)
30 cd08864 SRPBCC_DUF3074 DUF3074 99.4 2.4E-12 5.3E-17 121.7 15.3 122 157-280 62-199 (208)
31 cd07813 COQ10p_like Coenzyme Q 99.2 6.7E-10 1.4E-14 96.3 14.0 133 138-289 3-137 (138)
32 PF11274 DUF3074: Protein of u 99.0 2.3E-08 5E-13 93.0 18.0 134 144-279 13-176 (184)
33 cd08866 SRPBCC_11 Ligand-bindi 99.0 3.9E-08 8.5E-13 85.2 17.9 137 137-288 2-143 (144)
34 cd07819 SRPBCC_2 Ligand-bindin 98.8 3E-07 6.5E-12 78.5 15.6 133 136-286 4-139 (140)
35 cd05018 CoxG Carbon monoxide d 98.7 1E-06 2.3E-11 75.5 15.4 136 135-287 2-143 (144)
36 PF03364 Polyketide_cyc: Polyk 98.3 6.8E-05 1.5E-09 63.8 16.6 124 144-284 2-130 (130)
37 cd07821 PYR_PYL_RCAR_like Pyra 98.3 4.5E-05 9.9E-10 64.6 15.4 134 136-287 3-139 (140)
38 PRK10724 hypothetical protein; 98.2 8.8E-05 1.9E-09 67.4 15.8 136 135-289 16-153 (158)
39 cd07817 SRPBCC_8 Ligand-bindin 98.1 0.00024 5.2E-09 60.5 16.2 128 138-287 4-137 (139)
40 cd08861 OtcD1_ARO-CYC_like N-t 98.0 0.00034 7.5E-09 60.3 14.6 131 140-287 5-140 (142)
41 cd07824 SRPBCC_6 Ligand-bindin 97.9 0.00064 1.4E-08 59.7 15.2 131 136-285 3-144 (146)
42 cd08860 TcmN_ARO-CYC_like N-te 97.8 0.002 4.4E-08 57.5 17.1 132 140-289 7-144 (146)
43 cd08865 SRPBCC_10 Ligand-bindi 97.6 0.0046 1E-07 52.0 15.8 130 139-287 4-138 (140)
44 PF10604 Polyketide_cyc2: Poly 97.6 0.014 3E-07 49.3 18.1 129 136-287 4-138 (139)
45 cd07812 SRPBCC START/RHO_alpha 97.5 0.0069 1.5E-07 49.3 14.7 131 138-285 3-139 (141)
46 cd07822 SRPBCC_4 Ligand-bindin 97.4 0.015 3.3E-07 49.1 15.9 135 137-289 3-138 (141)
47 cd08862 SRPBCC_Smu440-like Lig 97.3 0.018 4E-07 48.8 16.0 128 136-287 3-136 (138)
48 cd07823 SRPBCC_5 Ligand-bindin 97.2 0.015 3.4E-07 50.9 14.7 134 139-287 4-144 (146)
49 cd07818 SRPBCC_1 Ligand-bindin 97.0 0.057 1.2E-06 46.9 16.2 135 136-288 4-149 (150)
50 cd07825 SRPBCC_7 Ligand-bindin 96.7 0.073 1.6E-06 45.8 14.0 136 137-287 3-143 (144)
51 COG2867 Oligoketide cyclase/li 96.6 0.021 4.6E-07 51.4 10.0 134 136-289 4-137 (146)
52 PF06240 COXG: Carbon monoxide 96.5 0.55 1.2E-05 41.2 18.3 131 140-287 3-139 (140)
53 cd07814 SRPBCC_CalC_Aha1-like 96.3 0.43 9.4E-06 40.2 16.3 134 138-288 4-138 (139)
54 COG5637 Predicted integral mem 96.0 0.33 7.1E-06 45.5 14.8 141 132-293 68-210 (217)
55 cd07820 SRPBCC_3 Ligand-bindin 96.0 0.53 1.1E-05 40.6 15.5 107 139-263 4-113 (137)
56 PF08327 AHSA1: Activator of H 95.1 1.6 3.5E-05 36.2 15.0 123 144-287 1-123 (124)
57 cd08894 SRPBCC_CalC_Aha1-like_ 94.8 2.3 5E-05 36.8 15.6 133 137-288 3-138 (139)
58 KOG3845 MLN, STAR and related 94.7 0.0018 4E-08 62.9 -4.7 176 109-289 27-208 (241)
59 TIGR01599 PYST-A Plasmodium yo 94.7 4 8.6E-05 39.1 17.9 155 94-256 23-208 (208)
60 cd08893 SRPBCC_CalC_Aha1-like_ 94.6 2.4 5.1E-05 35.7 15.2 131 138-288 4-135 (136)
61 COG3427 Carbon monoxide dehydr 94.6 1.4 3E-05 40.0 13.8 135 136-288 3-144 (146)
62 cd07816 Bet_v1-like Ligand-bin 94.2 3.8 8.3E-05 36.3 17.1 118 136-264 3-122 (148)
63 cd08896 SRPBCC_CalC_Aha1-like_ 94.1 3.7 8E-05 35.8 16.7 140 137-288 3-145 (146)
64 cd08899 SRPBCC_CalC_Aha1-like_ 91.9 5.5 0.00012 35.4 13.4 130 131-289 8-137 (157)
65 cd08900 SRPBCC_CalC_Aha1-like_ 85.4 23 0.00051 30.5 17.8 137 137-288 3-142 (143)
66 cd07826 SRPBCC_CalC_Aha1-like_ 83.6 29 0.00062 30.1 16.7 136 137-288 3-141 (142)
67 cd08895 SRPBCC_CalC_Aha1-like_ 82.8 31 0.00067 29.9 18.0 136 138-287 4-144 (146)
68 KOG2200 Tumour suppressor prot 82.2 0.37 8E-06 52.1 -0.4 72 189-269 572-645 (674)
69 COG3832 Uncharacterized conser 82.1 36 0.00078 30.2 15.5 140 132-287 6-147 (149)
70 PF10698 DUF2505: Protein of u 78.1 52 0.0011 29.6 17.6 138 139-289 4-157 (159)
71 cd08901 SRPBCC_CalC_Aha1-like_ 72.1 63 0.0014 27.7 13.6 125 138-288 4-131 (136)
72 KOG3177 Oligoketide cyclase/li 66.9 53 0.0012 31.7 9.7 121 136-273 70-194 (227)
73 cd08898 SRPBCC_CalC_Aha1-like_ 66.2 80 0.0017 26.6 14.4 137 136-288 3-144 (145)
74 cd08891 SRPBCC_CalC Ligand-bin 65.7 90 0.002 27.1 16.1 138 137-289 3-149 (149)
75 cd08897 SRPBCC_CalC_Aha1-like_ 58.5 1.1E+02 0.0025 25.8 14.8 128 137-288 3-132 (133)
76 PTZ00220 Activator of HSP-90 A 50.3 1.7E+02 0.0036 25.3 13.7 122 144-288 2-127 (132)
77 PF12273 RCR: Chitin synthesis 47.7 8.1 0.00017 33.8 0.7 14 25-38 5-18 (130)
78 PF12273 RCR: Chitin synthesis 41.1 20 0.00042 31.4 2.1 18 25-42 2-19 (130)
79 PF04707 PRELI: PRELI-like fam 38.6 3E+02 0.0064 24.8 13.9 94 162-264 14-120 (157)
80 COG5580 Activator of HSP90 ATP 20.4 1.7E+02 0.0036 28.8 4.6 112 114-246 138-263 (272)
No 1
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-43 Score=331.07 Aligned_cols=208 Identities=38% Similarity=0.643 Sum_probs=190.4
Q ss_pred cccCCCHHHHHHHHHHhhcc-cCCCCCceEEEecCCcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHHHhcCccchh
Q 015638 83 RSEIVSDADLKFLIETLEDN-FSENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRV 161 (403)
Q Consensus 83 ~~~~vseedle~ll~~l~e~-~~~~~~Welv~dk~gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d~l~D~e~R~ 161 (403)
..+.|+++|+.+++++++++ +.++.+|++++++.++.+|++ +.|.+|+.+||+.++|+|+||+.|+|+++|.+||+
T Consensus 4 ~~~~vs~~~~~~~~~~~e~~~~~~~~~We~~~~k~~~~i~~q---~~~~~g~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRk 80 (219)
T KOG2761|consen 4 PDGGVSEEDLPELLDLLEEKACDAGQGWELVMDKSTPSIWRQ---RRPKTGLYEYKSRTVFEDVTPEIVRDVQWDDEYRK 80 (219)
T ss_pred ccCcccccchHHHHHhhcccccCcccchhhhcccCCceEEEE---cccCCCCEEEEEEEEEcCCCHHHHHHHHhhhHHHH
Confidence 35789999999999999887 456789999999999999986 57789999999999999999999999999999999
Q ss_pred hHHhhcceeEEEEEecCCCeEEEEEeccCC-CCCCceEEEEEEEEEecCCEEEEEEEeccCCCCCCCCCcEEEEEeeeEE
Q 015638 162 RWDKTVVEHKQLQVDKTNGTEIGRIIKKFP-LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGW 240 (403)
Q Consensus 162 ~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P-~vS~RDfV~~rri~~~~d~~~~i~~kSVdhp~~P~~kg~VRv~~~~Sgw 240 (403)
+||.++.+.++||++...|++|+||++++| |+++||||++||+|..+++.++|++++++||.+|+++++||+..+.+||
T Consensus 81 kWD~~vi~~e~ie~d~~tg~~vv~w~~kfP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~ 160 (219)
T KOG2761|consen 81 KWDDMVIELETIEEDPVTGTEVVYWVKKFPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGW 160 (219)
T ss_pred HHHHHhhhheeeeecCCCCceEEEEEEeCCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEE
Confidence 999999999999996667999999999999 6999999999999998778899999999999999999999999999999
Q ss_pred EEE-eeC--CCCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHHHhhhhh
Q 015638 241 HIK-KVP--GRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRNYAVV 293 (403)
Q Consensus 241 vIr-pv~--g~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al~kY~~~ 293 (403)
+|+ +.. ++++|.++|..+.||+|. .|++|+++.+|||+++++|++||++|++.
T Consensus 161 ~I~~~~~~~~~~~~~~~~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~~Y~~~ 218 (219)
T KOG2761|consen 161 LIRVESRSGDEQGCACEYLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALLAYQEK 218 (219)
T ss_pred EEEcccccCCCCccEEEEEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHHhhhhc
Confidence 999 332 345777777777888777 99999999999999999999999999875
No 2
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=100.00 E-value=6.5e-40 Score=307.53 Aligned_cols=199 Identities=38% Similarity=0.673 Sum_probs=181.8
Q ss_pred CCCHHHHHHHHHHhhcccCCCCCceEEEecCC----cEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHHHhcCccchh
Q 015638 86 IVSDADLKFLIETLEDNFSENDKWENVIDKRN----NLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRV 161 (403)
Q Consensus 86 ~vseedle~ll~~l~e~~~~~~~Welv~dk~g----ikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d~l~D~e~R~ 161 (403)
.|+|+||++|++++++.. ..++|+++++++| ++||. |..+++|+.+||++++|+++|+++|+++++|.++|+
T Consensus 2 ~~~~~d~~~~~~~~~~~~-~~~~W~~~~~k~~~~~~i~vy~---r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~ 77 (209)
T cd08870 2 HVSEEDLRDLVQELQEGA-EGQAWQQVMDKSTPDMSYQAWR---RKPKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRK 77 (209)
T ss_pred CCCHHHHHHHHHHhcCcC-CCCcceEhhhccCCCceEEEEe---cccCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHh
Confidence 589999999999998863 3478999999999 99985 345557888999999999899999999999999999
Q ss_pred hHHhhcceeEEEEEecCC-CeEEEEEeccCC-CCCCceEEEEEEEEEecCCEEEEEEEeccCCCCCCCCCcEEEEEeeeE
Q 015638 162 RWDKTVVEHKQLQVDKTN-GTEIGRIIKKFP-LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSG 239 (403)
Q Consensus 162 ~WD~~v~e~evLE~~~~~-gt~Ivy~v~k~P-~vS~RDfV~~rri~~~~d~~~~i~~kSVdhp~~P~~kg~VRv~~~~Sg 239 (403)
+||+++.++++||. .++ +.+|+|++.++| |+++||||+.++++...++.++|++++++||.+|++ |+||++.+.++
T Consensus 78 ~Wd~~~~~~~~le~-~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~-~~vRv~~~~~~ 155 (209)
T cd08870 78 KWDETVIEHETLEE-DEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS-GRKRVDDYESS 155 (209)
T ss_pred hhhhheeeEEEEEe-cCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC-CcEEEEEEEeE
Confidence 99999999999998 433 799999999999 599999999988887767889999999999999999 99999999999
Q ss_pred EEEEeeC-CCCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHHHhh
Q 015638 240 WHIKKVP-GRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRNY 290 (403)
Q Consensus 240 wvIrpv~-g~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al~kY 290 (403)
|+|+|++ ++++|+++|+++.||||+ .||+|+++.++++++|++|+++|++|
T Consensus 156 ~~i~p~~~~~~~t~~~~~~~~dp~G~IP~wlvN~~~~~~~~~~l~~l~~a~~~Y 209 (209)
T cd08870 156 LVIRAVKGDGQGSACEVTYFHNPDGGIPRELAKLAVKRGMPGFLKKLENALRKY 209 (209)
T ss_pred EEEEEecCCCCceEEEEEEEECCCCCCCHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 9999985 556899999999999998 89999999999999999999999988
No 3
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=100.00 E-value=3.1e-39 Score=303.33 Aligned_cols=199 Identities=21% Similarity=0.416 Sum_probs=178.5
Q ss_pred cCCCHHHHHHHHHHhhcccCCCCCceEEEecCCcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHHHhcCccchhhHH
Q 015638 85 EIVSDADLKFLIETLEDNFSENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWD 164 (403)
Q Consensus 85 ~~vseedle~ll~~l~e~~~~~~~Welv~dk~gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD 164 (403)
+.|+|+||++++++++....+..+|+++++++|++||. |..++++...||++++|+++++++++++++|.++|++||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~W~l~~~~~~i~Vy~---r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd 79 (207)
T cd08910 3 GTFSEEQFREACAELQQPALDGAAWELLVESSGISIYR---LLDEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWD 79 (207)
T ss_pred cccCHHHHHHHHHHhcCCCCCCCCeEEEEecCCeEEEE---eccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHH
Confidence 67999999999999987666778899999999999995 457788889999999999899999999999999999999
Q ss_pred hhcceeEEEEEecCCCeEEEEEeccCC-CCCCceEEEEEEEEEe--cCC-EEEEEEEeccCCCCCCCCCcEEEEEeeeEE
Q 015638 165 KTVVEHKQLQVDKTNGTEIGRIIKKFP-LLTPREYVLAWRLWEG--RDQ-TFYCFSKECDHPLAPPQRKYVRVTYFRSGW 240 (403)
Q Consensus 165 ~~v~e~evLE~~~~~gt~Ivy~v~k~P-~vS~RDfV~~rri~~~--~d~-~~~i~~kSVdhp~~P~~kg~VRv~~~~Sgw 240 (403)
+++.+ +++. .+++..|+|+..++| |+++||||+.++.... +++ .+++++++++||.+|+++|+||+..+.++|
T Consensus 80 ~~~~~--~~~~-~~~~~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~ 156 (207)
T cd08910 80 QYVKE--LYEK-ECDGETVIYWEVKYPFPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSL 156 (207)
T ss_pred HHHHh--heee-cCCCCEEEEEEEEcCCCCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEE
Confidence 99987 5665 677899999999999 5999999988655433 233 346788999999999999999999999999
Q ss_pred EEEeeCCCCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHHHhh
Q 015638 241 HIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRNY 290 (403)
Q Consensus 241 vIrpv~g~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al~kY 290 (403)
+|+|. ++++|+++|++|.||||+ .|++|+++.++++.++++|+++|++|
T Consensus 157 ~i~p~-~~~~t~i~~~~~~DPgG~IP~wlvN~~~~~~~~~~l~~l~ka~~~y 207 (207)
T cd08910 157 AIESD-GKKGSKVFMYYFDNPGGMIPSWLINWAAKNGVPNFLKDMQKACQNY 207 (207)
T ss_pred EEEeC-CCCceEEEEEEEeCCCCcchHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 99995 667899999999999999 89999999999999999999999988
No 4
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=100.00 E-value=1.3e-37 Score=293.93 Aligned_cols=199 Identities=21% Similarity=0.323 Sum_probs=181.8
Q ss_pred cCCCHHHHHHHHHHhhcccCCCCCceEEEecCCcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHHHhcCccchhhHH
Q 015638 85 EIVSDADLKFLIETLEDNFSENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWD 164 (403)
Q Consensus 85 ~~vseedle~ll~~l~e~~~~~~~Welv~dk~gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD 164 (403)
.++|+++|+.|++++++. ++|+++++++|++||++ ..++++...||++++|+++++++++++++|.+.|++||
T Consensus 5 ~~~~~~~~~~~~~~~~~~----~~W~~~~~~~gi~iy~r---~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd 77 (222)
T cd08871 5 RLPTDADFEEFKKLCDST----DGWKLKYNKNNVKVWTK---NPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWD 77 (222)
T ss_pred cCCCHHHHHHHHHHhcCC----CCcEEEEcCCCeEEEEe---eCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhh
Confidence 468999999999998653 58999999999999974 34555678899999998899999999999999999999
Q ss_pred hhcceeEEEEEecCCCeEEEEEeccCC-CCCCceEEEEEEEEEecCCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEE
Q 015638 165 KTVVEHKQLQVDKTNGTEIGRIIKKFP-LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIK 243 (403)
Q Consensus 165 ~~v~e~evLE~~~~~gt~Ivy~v~k~P-~vS~RDfV~~rri~~~~d~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIr 243 (403)
+++.++++|++ ++++++|+|++.++| ++++||||+.+++... ++.++++..|++||.+|+++|+|||..+.+||+|+
T Consensus 78 ~~~~e~~~ie~-~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~-~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~ 155 (222)
T cd08871 78 SNMIESFDICQ-LNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEF-GGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIR 155 (222)
T ss_pred hhhceeEEEEE-cCCCCEEEEEEeECCCCCCCCeEEEEEEEEeC-CCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEE
Confidence 99999999998 889999999999888 5999999998765554 48889999999999999999999999999999999
Q ss_pred eeCCCCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHHHhhhhh
Q 015638 244 KVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRNYAVV 293 (403)
Q Consensus 244 pv~g~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al~kY~~~ 293 (403)
|+ ++++|+|+|+.|+||||+ .||+|+++.+.++.+|++|+++|.+|++.
T Consensus 156 p~-~~~~t~vt~~~~~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~~~ 206 (222)
T cd08871 156 PT-GPKGCTLTYVTQNDPKGSLPKWVVNKATTKLAPKVMKKLHKAALKYPEW 206 (222)
T ss_pred EC-CCCCEEEEEEEecCCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 97 466899999999999999 89999999999999999999999999987
No 5
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=100.00 E-value=9.6e-38 Score=292.95 Aligned_cols=183 Identities=26% Similarity=0.402 Sum_probs=166.2
Q ss_pred CCCCceEEEecCCcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEE
Q 015638 105 ENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIG 184 (403)
Q Consensus 105 ~~~~Welv~dk~gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Iv 184 (403)
+.++|+++++++|++||. |..+++|..+||++++|.++|+++++++++|.++|++||+++.++++||++.+++++|+
T Consensus 19 ~~~~W~l~~~~~~i~Vy~---r~~~~s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~ 95 (207)
T cd08911 19 EPDGWEPFIEKKDMLVWR---REHPGTGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEII 95 (207)
T ss_pred cCCCcEEEEEcCceEEEE---eccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEE
Confidence 456799999999999995 35666788899999999889999999999999999999999999999998334489999
Q ss_pred EEeccCC-CCCCceEEEEEEEEEec-CCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeC--CCCceEEEEEEEec
Q 015638 185 RIIKKFP-LLTPREYVLAWRLWEGR-DQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVP--GRDACEIRIFHQED 260 (403)
Q Consensus 185 y~v~k~P-~vS~RDfV~~rri~~~~-d~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~--g~~~c~VT~i~q~D 260 (403)
|+..++| ++++||||+.++++..+ ++.++|+++|++||.+|+++|+||+..+.++|+|+|.. ++++|+++|++++|
T Consensus 96 y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~d 175 (207)
T cd08911 96 YWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDN 175 (207)
T ss_pred EEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeC
Confidence 9999999 59999999998876654 45678899999999999999999999999999999975 45689999999999
Q ss_pred CCCc--hhhHHHhHHhhHHHHHHHHHHHHHhh
Q 015638 261 AGLN--VGMAKLAFAKGIWSYVCKMDNALRNY 290 (403)
Q Consensus 261 pgG~--~~LvN~~v~~gm~~~lkkL~~al~kY 290 (403)
|||+ .|++|+++.+++++||++|++||++|
T Consensus 176 PgG~IP~~lvN~~~~~~~~~~l~~l~~a~~~y 207 (207)
T cd08911 176 PGVNIPSYITSWVAMSGMPDFLERLRNAALKY 207 (207)
T ss_pred CCCccCHHHHHHHHHhhccHHHHHHHHHHhcC
Confidence 9999 89999999999999999999999987
No 6
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=100.00 E-value=3.7e-35 Score=275.58 Aligned_cols=193 Identities=17% Similarity=0.265 Sum_probs=170.9
Q ss_pred CCHHHHHHHHHHhhcccCCCCCceEEEecCCcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHHHhcCccchhhHHhh
Q 015638 87 VSDADLKFLIETLEDNFSENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKT 166 (403)
Q Consensus 87 vseedle~ll~~l~e~~~~~~~Welv~dk~gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~ 166 (403)
+.++.++++++..+. .++|+..+++++++||++ ..++.....||++++++ ++|+++++++.|.+.|.+||++
T Consensus 6 ~~~~~~~~~l~~~~~----~~gWk~~k~~~~~~v~~k---~~~~~~gkl~k~egvi~-~~~e~v~~~l~~~e~r~~Wd~~ 77 (204)
T cd08904 6 IAQETSQEVLGYSRD----TSGWKVVKTSKKITVSWK---PSRKYHGNLYRVEGIIP-ESPAKLIQFMYQPEHRIKWDKS 77 (204)
T ss_pred HHHHHHHHHHhhhhc----ccCCeEEecCCceEEEEE---EcCCCCceEEEEEEEec-CCHHHHHHHHhccchhhhhccc
Confidence 345666666655443 479999999999999964 45556668899999997 8999999999999999999999
Q ss_pred cceeEEEEEecCCCeEEEEEecc---CCCCCCceEEEEEEEEEecCCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEE
Q 015638 167 VVEHKQLQVDKTNGTEIGRIIKK---FPLLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIK 243 (403)
Q Consensus 167 v~e~evLE~~~~~gt~Ivy~v~k---~P~vS~RDfV~~rri~~~~d~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIr 243 (403)
+.++++||+ ++++|.|.|.+.+ +++|++||||.+|++++.+++.|++...|++||.+|+++|||||+++++||+|+
T Consensus 78 ~~~~~iie~-Id~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~ 156 (204)
T cd08904 78 LQVYKMLQR-IDSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCS 156 (204)
T ss_pred ccceeeEEE-eCCCcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEE
Confidence 999999999 9999999998864 346899999999887777778888999999999999999999999999999999
Q ss_pred eeCCCC-ceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHHH
Q 015638 244 KVPGRD-ACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALR 288 (403)
Q Consensus 244 pv~g~~-~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al~ 288 (403)
|+++++ +|+++++.|+||+|| +|++|.++++.|.+|+.+|+++++
T Consensus 157 pl~~~p~~t~l~~~~~~DlkG~lP~~vv~~~~~~~~~~f~~~~~~~~~ 204 (204)
T cd08904 157 PLPENPAYSKLVMFVQPELRGNLSRSVIEKTMPTNLVNLILDAKDGIK 204 (204)
T ss_pred ECCCCCCceEEEEEEEeCCCCCCCHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 997654 799999999999999 999999999999999999999873
No 7
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=100.00 E-value=1.8e-33 Score=263.14 Aligned_cols=189 Identities=20% Similarity=0.358 Sum_probs=162.5
Q ss_pred HHHHHHHHHHhhcccCCCCCceEEEecC-CcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHHH-hcCccchhhHHhh
Q 015638 89 DADLKFLIETLEDNFSENDKWENVIDKR-NNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDF-YMDNDYRVRWDKT 166 (403)
Q Consensus 89 eedle~ll~~l~e~~~~~~~Welv~dk~-gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d~-l~D~e~R~~WD~~ 166 (403)
++.++++++.++ .++|++.++++ |++||++ ..++++ ..||++++++ +|++++++. +.|.+.|++||++
T Consensus 11 ~~~~~~~~~~~~-----~~~W~l~~~~~~~i~i~~r---~~~~~~-~~~k~~~~i~-~~~~~v~~~l~~d~~~~~~Wd~~ 80 (208)
T cd08868 11 AEALARAWSILT-----DPGWKLEKNTTWGDVVYSR---NVPGVG-KVFRLTGVLD-CPAEFLYNELVLNVESLPSWNPT 80 (208)
T ss_pred HHHHHHHHHHhc-----CCCceEEEecCCCCEEEEE---EcCCCc-eEEEEEEEEc-CCHHHHHHHHHcCccccceecCc
Confidence 445555555533 34899999998 9999984 345544 6799999995 999999874 5689999999999
Q ss_pred cceeEEEEEecCCCeEEEEEeccCC---CCCCceEEEEEEEEEecCCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEE
Q 015638 167 VVEHKQLQVDKTNGTEIGRIIKKFP---LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIK 243 (403)
Q Consensus 167 v~e~evLE~~~~~gt~Ivy~v~k~P---~vS~RDfV~~rri~~~~d~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIr 243 (403)
+.++++|++ +++++.|+|++.+.| ++++||||+++++... ++.++++..|++||.+|+++|+||++.+.+||+|+
T Consensus 81 ~~~~~~i~~-~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~-~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~ 158 (208)
T cd08868 81 VLECKIIQV-IDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIR-ENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILR 158 (208)
T ss_pred ccceEEEEE-ecCCcEEEEEEecCcCCCcccccceEEEEEEEec-CCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEE
Confidence 999999999 899999999887543 5899999998765554 57788999999999999999999999999999999
Q ss_pred eeCC-CCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHHHh
Q 015638 244 KVPG-RDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRN 289 (403)
Q Consensus 244 pv~g-~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al~k 289 (403)
|+++ .+.|.|+|+.|.||||+ .|++|+++.+++++++++|+++|.+
T Consensus 159 p~~~~~~~t~v~~~~~~Dp~G~iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 159 PLPNNPNKCNFTWLLNTDLKGWLPQYLVDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred ECCCCCCceEEEEEEEECCCCCCcceeeehhhHHHHHHHHHHHHHHHhh
Confidence 9864 36899999999999999 8999999999999999999999875
No 8
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=100.00 E-value=4.7e-33 Score=266.51 Aligned_cols=195 Identities=14% Similarity=0.209 Sum_probs=166.3
Q ss_pred CHHHHHHHHHHhhcccCCCCCceEEEecCCcEEEEeeccccCCCCCe--EEEEEEEeccCCHHHHHHHhcCccchhhHHh
Q 015638 88 SDADLKFLIETLEDNFSENDKWENVIDKRNNLLYYNARCCKPKVGPL--KYLSVTVFENCTPEILRDFYMDNDYRVRWDK 165 (403)
Q Consensus 88 seedle~ll~~l~e~~~~~~~Welv~dk~gikVy~ka~R~~p~~G~~--~yK~~tv~edaspe~V~d~l~D~e~R~~WD~ 165 (403)
.|+.+++.++.+.+.. ++++|++.++++|++||. |..+++|.. .||+++++++++++++.++++|.++|.+||.
T Consensus 8 ~~~~~~~~~~~~~~~~-~~~~W~l~~~~~gikVy~---r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~ 83 (235)
T cd08872 8 VDEKVQEQLTYALEDV-GADGWQLFAEEGEMKVYR---REVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWET 83 (235)
T ss_pred HHHHHHHHHHHHHccC-CCCCCEEEEeCCceEEEE---EECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHh
Confidence 3555666666666643 456899999999999996 356666755 6999999999999999999999999999999
Q ss_pred hcceeEEEEEecCCCeEEEEEeccCC-CCCCceEEEEEEEEEecC-------CEEEEEEEeccCCCCCCCCCcEEEEEee
Q 015638 166 TVVEHKQLQVDKTNGTEIGRIIKKFP-LLTPREYVLAWRLWEGRD-------QTFYCFSKECDHPLAPPQRKYVRVTYFR 237 (403)
Q Consensus 166 ~v~e~evLE~~~~~gt~Ivy~v~k~P-~vS~RDfV~~rri~~~~d-------~~~~i~~kSVdhp~~P~~kg~VRv~~~~ 237 (403)
++.++++||+ +++++.|+|+..+.| |+++||||+.+++.+.++ +.|++++.|++||.+|+++||||+....
T Consensus 84 ~~~~~~vie~-l~~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~ 162 (235)
T cd08872 84 TLENFHVVET-LSQDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTV 162 (235)
T ss_pred hhheeEEEEe-cCCCCEEEEEEccCCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEe
Confidence 9999999999 899999999999988 699999999887655443 5678899999999999999999999743
Q ss_pred ---eE---------EEEEeeCCCCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHHHh
Q 015638 238 ---SG---------WHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRN 289 (403)
Q Consensus 238 ---Sg---------wvIrpv~g~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al~k 289 (403)
++ |.+.| +++.|+|||+.|+||||+ .|++|++.++++|+||+++.+.+.+
T Consensus 163 ~~~~~~~i~~~~g~~~~t~--~~~~~~ity~~~~dPgG~iP~wvvn~~~k~~~P~~l~~~~~~~~~ 226 (235)
T cd08872 163 AMICQTFVSPPDGNQEITR--DNILCKITYVANVNPGGWAPASVLRAVYKREYPKFLKRFTSYVQE 226 (235)
T ss_pred eeeeeeeeecCCCcccccC--CCCeEEEEEEEEeCCCCCccHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 33 33443 345899999999999999 8999999999999999999998876
No 9
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=100.00 E-value=1.4e-32 Score=256.88 Aligned_cols=190 Identities=17% Similarity=0.303 Sum_probs=163.1
Q ss_pred HHHHHHHHHHhhcccCCCCCceEEEecCCcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHHHhcC--ccchhhHHhh
Q 015638 89 DADLKFLIETLEDNFSENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMD--NDYRVRWDKT 166 (403)
Q Consensus 89 eedle~ll~~l~e~~~~~~~Welv~dk~gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d~l~D--~e~R~~WD~~ 166 (403)
++.++++++.++ .+++|++.++++|++||++ +..+.....||++++|+ ++++++++++.| .+.|++||++
T Consensus 8 ~~~~~~~~~~~~----~~~~W~~~~~~~~i~v~~~---~~~~~~~~~~k~~~~i~-~~~~~v~~~l~d~~~~~r~~Wd~~ 79 (206)
T cd08867 8 EKLANEALQYIN----DTDGWKVLKTVKNITVSWK---PSTEFTGHLYRAEGIVD-ALPEKVIDVIIPPCGGLRLKWDKS 79 (206)
T ss_pred HHHHHHHHHHhc----CcCCcEEEEcCCCcEEEEe---cCCCCCCEEEEEEEEEc-CCHHHHHHHHHhcCcccccccccc
Confidence 333444444433 3478999999999999984 22333346799999996 899999999998 8999999999
Q ss_pred cceeEEEEEecCCCeEEEEEeccCC---CCCCceEEEEEEEEEecCCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEE
Q 015638 167 VVEHKQLQVDKTNGTEIGRIIKKFP---LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIK 243 (403)
Q Consensus 167 v~e~evLE~~~~~gt~Ivy~v~k~P---~vS~RDfV~~rri~~~~d~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIr 243 (403)
+.++++||+ +++++.|+|+..++| ++++||||+++++.+.+++.+++...|++||.+|+.+|+|||++..+||.|+
T Consensus 80 ~~~~~~le~-id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~ 158 (206)
T cd08867 80 LKHYEVLEK-ISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCS 158 (206)
T ss_pred ccceEEEEE-eCCCeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEE
Confidence 999999999 899999999876543 5899999999877777777888889999999999999999999999999999
Q ss_pred eeCC-CCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHH
Q 015638 244 KVPG-RDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNAL 287 (403)
Q Consensus 244 pv~g-~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al 287 (403)
|.++ ++.|.++|+.|+||||+ +|++|+++.+++..|+++|++++
T Consensus 159 p~~~~~~~t~~~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 159 PLKGSPDKSFLVLYVQTDLRGMIPQSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred ECCCCCCceEEEEEEEeccCCCCcHHHHHhhhhhhHHHHHHHHHHhc
Confidence 9764 45899999999999999 89999999999999999999886
No 10
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=100.00 E-value=1.2e-32 Score=259.18 Aligned_cols=191 Identities=18% Similarity=0.330 Sum_probs=164.3
Q ss_pred CHHHHHHHHHHhhcccCCCCCceEEEec-CCcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHH-HHhcCccchhhHHh
Q 015638 88 SDADLKFLIETLEDNFSENDKWENVIDK-RNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILR-DFYMDNDYRVRWDK 165 (403)
Q Consensus 88 seedle~ll~~l~e~~~~~~~Welv~dk-~gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~-d~l~D~e~R~~WD~ 165 (403)
..|.|+++++.|.+ +++|++..++ +|++||++ ..++++ ..||++++++ +|++.++ +++.|.++|++||+
T Consensus 10 ~~~~~~~~~~~l~~----~~~W~l~~~~~~gi~V~s~---~~~~~~-~~fk~~~~v~-~~~~~l~~~ll~D~~~~~~W~~ 80 (209)
T cd08906 10 GKEALAVVEQILAQ----EENWKFEKNNDNGDTVYTL---EVPFHG-KTFILKAFMQ-CPAELVYQEVILQPEKMVLWNK 80 (209)
T ss_pred HHHHHHHHHHHhhc----ccCCEEEEecCCCCEEEEe---ccCCCC-cEEEEEEEEc-CCHHHHHHHHHhChhhccccCc
Confidence 35677777777665 3689998765 99999973 456666 7899999996 9999997 58899999999999
Q ss_pred hcceeEEEEEecCCCeEEEEEeccCC---CCCCceEEEEEEEEEecCCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEE
Q 015638 166 TVVEHKQLQVDKTNGTEIGRIIKKFP---LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHI 242 (403)
Q Consensus 166 ~v~e~evLE~~~~~gt~Ivy~v~k~P---~vS~RDfV~~rri~~~~d~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvI 242 (403)
++.++++|++ +++++.|+|.+..++ ++++||||..+++.+.+ +.|+++..++.|+.+|+++|||||++..+||.|
T Consensus 81 ~~~~~~vi~~-~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~-~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i 158 (209)
T cd08906 81 TVSACQVLQR-VDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRR-DRYVSAGISTTHSHKPPLSKYVRGENGPGGFVV 158 (209)
T ss_pred cchhhhheee-ccCCcEEEEEEccccccCCCCCCceEEEEEEEecC-CcEEEEEEEEecCCCCCCCCeEEEeeeccEEEE
Confidence 9999999999 899999999554332 58999999987655544 458888899999999999999999999999999
Q ss_pred Eee-CCCCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHHHh
Q 015638 243 KKV-PGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRN 289 (403)
Q Consensus 243 rpv-~g~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al~k 289 (403)
.|. .+++.|++||+.|+||||+ +||+|.++.+.|..++.+|++.+..
T Consensus 159 ~~~~~~~~~t~vt~~~~~Dp~G~lP~~lvN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 159 LKSASNPSVCTFIWILNTDLKGRLPRYLIHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred EECCCCCCceEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 995 3566999999999999999 8999999999999999999998864
No 11
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=100.00 E-value=4.1e-32 Score=255.16 Aligned_cols=192 Identities=18% Similarity=0.303 Sum_probs=163.7
Q ss_pred HHHHHHHHHHhhcccCCCCCceEEEecCCcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHHHhcCc--cchhhHHhh
Q 015638 89 DADLKFLIETLEDNFSENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDN--DYRVRWDKT 166 (403)
Q Consensus 89 eedle~ll~~l~e~~~~~~~Welv~dk~gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d~l~D~--e~R~~WD~~ 166 (403)
++-++++++..+ .+++|++.++++|++||++ ..++.....||++++++ +++++++++++|. .+|++||.+
T Consensus 8 ~~~~~~~l~~~~----~~~~W~~~~~~~~i~v~~~---~~~~~~~~~~k~e~~i~-~s~~~~~~~l~d~~~~~r~~W~~~ 79 (208)
T cd08903 8 ESVADKMLLYRR----DESGWKTCRRTNEVAVSWR---PSAEFAGNLYKGEGIVY-ATLEQVWDCLKPAAGGLRVKWDQN 79 (208)
T ss_pred HHHHHHHHhhhc----cccCCEEEEcCCCEEEEee---ecCCCCCcEEEEEEEec-CCHHHHHHHHHhccchhhhhhhhc
Confidence 444455554432 3578999999999999973 33343334599999996 9999999999875 477999999
Q ss_pred cceeEEEEEecCCCeEEEEEeccCC---CCCCceEEEEEEEEEecCCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEE
Q 015638 167 VVEHKQLQVDKTNGTEIGRIIKKFP---LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIK 243 (403)
Q Consensus 167 v~e~evLE~~~~~gt~Ivy~v~k~P---~vS~RDfV~~rri~~~~d~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIr 243 (403)
+.++++||+ +++++.|+|....+| ++++||||+.+++.+.+++.+++...|++||.+|+++|||||+..++||.++
T Consensus 80 ~~~~~vle~-id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~ 158 (208)
T cd08903 80 VKDFEVVEA-ISDDVSVCRTVTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCE 158 (208)
T ss_pred cccEEEEEE-ecCCEEEEEEecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEE
Confidence 999999999 999999999866555 4899999999887777778888888999999999999999999999999999
Q ss_pred eeCC-CCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHHHh
Q 015638 244 KVPG-RDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRN 289 (403)
Q Consensus 244 pv~g-~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al~k 289 (403)
|+++ ++.|+|+|+.|.||||+ +|++|.++.++|..++.+|++++++
T Consensus 159 ~~~~~~~~t~v~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 159 PVPGEPDKTQLVSFFQTDLSGYLPQTVVDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred ECCCCCCceEEEEEEEeccCCCcCHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 9874 45899999999999999 8999999999999999999999875
No 12
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=100.00 E-value=2.5e-32 Score=252.47 Aligned_cols=181 Identities=20% Similarity=0.306 Sum_probs=159.0
Q ss_pred CCCCceEEEe-cCCcEEEEeeccccCC-CCCeEEEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeE
Q 015638 105 ENDKWENVID-KRNNLLYYNARCCKPK-VGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTE 182 (403)
Q Consensus 105 ~~~~Welv~d-k~gikVy~ka~R~~p~-~G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~ 182 (403)
+.++|++..+ ++++.+|++ ..++ ++...||+++++++.+++.+.+++.|.++|++||+++.++++||+ +++++.
T Consensus 17 ~~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~-~~~~~~ 92 (206)
T smart00234 17 SEPGWVLSSENENGDEVRSI---LSPGRSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEV-IDNGTV 92 (206)
T ss_pred CCCccEEccccCCcceEEEE---ccCCCCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEE-ECCCCe
Confidence 4578999997 778888863 3333 467889999999854444588899999999999999999999998 888999
Q ss_pred EEEEeccCC--CCCCceEEEEEEEEEecCCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEec
Q 015638 183 IGRIIKKFP--LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQED 260 (403)
Q Consensus 183 Ivy~v~k~P--~vS~RDfV~~rri~~~~d~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~D 260 (403)
|+|++.++| ++++||||++++++..+++.++++.+|++||.+|+++|+||++.+.+||+|+|++ ++.|+|+|+.|+|
T Consensus 93 i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~-~~~t~vt~~~~~D 171 (206)
T smart00234 93 IYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLG-NGPSKVTWVSHAD 171 (206)
T ss_pred EEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECC-CCCeEEEEEEEEe
Confidence 999998877 5899999999887776778888889999999999999999999999999999974 4579999999999
Q ss_pred CCCc--hhhHHHhHHhhHHHHHHHHHHHHHhh
Q 015638 261 AGLN--VGMAKLAFAKGIWSYVCKMDNALRNY 290 (403)
Q Consensus 261 pgG~--~~LvN~~v~~gm~~~lkkL~~al~kY 290 (403)
|||+ .|++|.++..+++.+++.|++++++.
T Consensus 172 ~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~ 203 (206)
T smart00234 172 LKGWLPHWLVRSLIKSGLAEFAKTWVATLQKH 203 (206)
T ss_pred cCCCccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence 9999 89999999999999999999888754
No 13
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=100.00 E-value=5.6e-32 Score=251.79 Aligned_cols=176 Identities=16% Similarity=0.209 Sum_probs=160.0
Q ss_pred CCCCceEEEecCCcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEE
Q 015638 105 ENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIG 184 (403)
Q Consensus 105 ~~~~Welv~dk~gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Iv 184 (403)
++++|++.++++|+.+|. +..++++...||.+++++ ..+++|++.+.+...|.+||++++++++||+ +++++.|.
T Consensus 21 ~~~~Wkl~k~~~~~~v~~---k~~~ef~gkl~R~Egvv~-~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~-Id~dt~I~ 95 (202)
T cd08902 21 LEEEWRVAKKSKDVTVWR---KPSEEFGGYLYKAQGVVE-DVYNRIVDHIRPGPYRLDWDSLMTSMDIIEE-FEENCCVM 95 (202)
T ss_pred cccCcEEEEeCCCEEEEE---ecCCcCCCceEEEEEEec-CCHHHHHHHHhcccchhcccchhhheeHhhh-hcCCcEEE
Confidence 467999999999999995 457888888999999997 7899999999999999999999999999999 99999998
Q ss_pred EEec-cCC--CCCCceEEEEEEEEEecCCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCC-CceEEEEEEEec
Q 015638 185 RIIK-KFP--LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGR-DACEIRIFHQED 260 (403)
Q Consensus 185 y~v~-k~P--~vS~RDfV~~rri~~~~d~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~-~~c~VT~i~q~D 260 (403)
++++ +.| +|+|||||.++++.+.+|+. +.+..|++|+..|+ |||||+++++||+++|++++ +.|.+|++.|+|
T Consensus 96 ~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~~pp--g~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~D 172 (202)
T cd08902 96 RYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEEARP--NFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTD 172 (202)
T ss_pred EEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCCCCC--CeEeecccccEEEEEECCCCCCceEEEEEEEec
Confidence 7775 444 68999999999998888875 55689999998877 99999999999999999876 499999999999
Q ss_pred CCCc--hhhHHHhHHhhHHHHHHHHHHHHH
Q 015638 261 AGLN--VGMAKLAFAKGIWSYVCKMDNALR 288 (403)
Q Consensus 261 pgG~--~~LvN~~v~~gm~~~lkkL~~al~ 288 (403)
|+|+ +++||.+++++|.+|+.+|+++++
T Consensus 173 LkG~LPqsiIdq~~~~~~~~F~~~Lrk~~~ 202 (202)
T cd08902 173 LRGMLPQSAVDTAMASTLVNFYSDLKKALK 202 (202)
T ss_pred CCCCccHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 9999 999999999999999999999874
No 14
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.98 E-value=1.1e-30 Score=240.93 Aligned_cols=181 Identities=25% Similarity=0.438 Sum_probs=156.2
Q ss_pred CCCCceEEEecCCcEEEEeeccccCC--CCCeEEEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeE
Q 015638 105 ENDKWENVIDKRNNLLYYNARCCKPK--VGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTE 182 (403)
Q Consensus 105 ~~~~Welv~dk~gikVy~ka~R~~p~--~G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~ 182 (403)
++++|++..++++..++++. ..+. .+...||+.++++ +++++++..++|... +||+++.++++||+ +++++.
T Consensus 17 ~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~~~v~-~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~-~~~~~~ 90 (206)
T PF01852_consen 17 DEDGWKLYKDKKNGDVYYKK--VSPSDSCPIKMFKAEGVVP-ASPEQVVEDLLDDRE--QWDKMCVEAEVLEQ-IDEDTD 90 (206)
T ss_dssp TCTTCEEEEEETTTCEEEEE--EECSSSTSCEEEEEEEEES-SCHHHHHHHHHCGGG--HHSTTEEEEEEEEE-EETTEE
T ss_pred CCCCCeEeEccCCCeEEEEE--eCccccccceEEEEEEEEc-CChHHHHHHHHhhHh--hcccchhhheeeee-cCCCCe
Confidence 46899999987777777642 3332 2567899999997 788877777776665 99999999999999 889999
Q ss_pred EEEEeccCCC---CCCceEEEEEEEEEecCCEEEEEEEeccCCCCCC-CCCcEEEEEeeeEEEEEeeCCCCceEEEEEEE
Q 015638 183 IGRIIKKFPL---LTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPP-QRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQ 258 (403)
Q Consensus 183 Ivy~v~k~P~---vS~RDfV~~rri~~~~d~~~~i~~kSVdhp~~P~-~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q 258 (403)
|+|++.++|+ +++||||++++.+..+++.++++.+|++||.+|+ .+|+|||+.+.+||+|+|+ +++.|+|+|+.|
T Consensus 91 i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~-~~~~~~vt~~~~ 169 (206)
T PF01852_consen 91 IVYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPL-GDGRTRVTYVSQ 169 (206)
T ss_dssp EEEEEEE-CTTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEE-TTCEEEEEEEEE
T ss_pred EEEEEecccCCCCCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEc-cCCCceEEEEEE
Confidence 9999986663 8999999998777767889999999999999998 9999999999999999998 555799999999
Q ss_pred ecCCCc--hhhHHHhHHhhHHHHHHHHHHHHHhhhh
Q 015638 259 EDAGLN--VGMAKLAFAKGIWSYVCKMDNALRNYAV 292 (403)
Q Consensus 259 ~DpgG~--~~LvN~~v~~gm~~~lkkL~~al~kY~~ 292 (403)
+||||+ .|++|+++.++++.++++|++++++|.+
T Consensus 170 ~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 170 VDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQKK 205 (206)
T ss_dssp EESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred ECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 999999 8999999999999999999999998764
No 15
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.98 E-value=2.7e-31 Score=249.75 Aligned_cols=191 Identities=14% Similarity=0.193 Sum_probs=163.5
Q ss_pred CCHHHHHHHHHHhhcccCCCCCceEEE-ecCCcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHH-HhcCccchhhHH
Q 015638 87 VSDADLKFLIETLEDNFSENDKWENVI-DKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRD-FYMDNDYRVRWD 164 (403)
Q Consensus 87 vseedle~ll~~l~e~~~~~~~Welv~-dk~gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d-~l~D~e~R~~WD 164 (403)
+.++.++++++.+++ .++|++.+ +++|++||++ ..+++| ..||++++++ ++++.+++ ++.|.+.+++||
T Consensus 9 ~~~~~~~~~~~~~~~----~~~W~~~~~~~~gi~v~s~---~~~~~~-k~~k~e~~i~-~~~~~l~~~l~~d~e~~~~W~ 79 (209)
T cd08905 9 QGEEALQKSLSILQD----QEGWKTEIVAENGDKVLSK---VVPDIG-KVFRLEVVVD-QPLDNLYSELVDRMEQMGEWN 79 (209)
T ss_pred HHHHHHHHHHHHhcc----ccCCEEEEecCCCCEEEEE---EcCCCC-cEEEEEEEec-CCHHHHHHHHHhchhhhceec
Confidence 456778888777643 46899995 5889999984 456666 8899999996 99999995 555889999999
Q ss_pred hhcceeEEEEEecCCCeEEEEEec-cCC--CCCCceEEEEEEEEEecCCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEE
Q 015638 165 KTVVEHKQLQVDKTNGTEIGRIIK-KFP--LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWH 241 (403)
Q Consensus 165 ~~v~e~evLE~~~~~gt~Ivy~v~-k~P--~vS~RDfV~~rri~~~~d~~~~i~~kSVdhp~~P~~kg~VRv~~~~Sgwv 241 (403)
+++.++++|++ +++++.|+|++. .+| ++++||||..+++.+. ++.++++..+++||.+|+++|+||++...+||+
T Consensus 80 ~~~~~~~vl~~-id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~-~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~ 157 (209)
T cd08905 80 PNVKEVKILQR-IGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRR-GSTCVLAGMATHFGLMPEQKGFIRAENGPTCIV 157 (209)
T ss_pred ccchHHHHHhh-cCCCceEEEEEeccCCCCccCccceEEEEEEEEc-CCcEEEEEEeecCCCCCCCCCeEEEEeeccEEE
Confidence 99999999999 899999999853 333 3899999998765554 455677789999999999999999999999999
Q ss_pred EEeeCC-CCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHHH
Q 015638 242 IKKVPG-RDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALR 288 (403)
Q Consensus 242 Irpv~g-~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al~ 288 (403)
|+|+++ ++.|+|+|+.|+||||+ .||+|.++.+.|..++.+|++.+.
T Consensus 158 l~p~~~~~~~t~v~~~~~~DpkG~iP~~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 158 LRPLAGDPSKTKLTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred EEECCCCCCceEEEEEEeecCCCCCCHHHHHHHhHHhHHHHHHHHHHHHh
Confidence 999854 35899999999999999 899999999999999999999876
No 16
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.97 E-value=6.3e-29 Score=224.11 Aligned_cols=175 Identities=25% Similarity=0.352 Sum_probs=158.5
Q ss_pred CCceEEEecCCcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEE
Q 015638 107 DKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRI 186 (403)
Q Consensus 107 ~~Welv~dk~gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~ 186 (403)
++|+++.+++|+++|++ +.+.++...+|++++|+ +|++++++++.|.+.|++||+.+.++++|+. ++++..++|+
T Consensus 15 ~~W~~~~~~~~v~vy~~---~~~~~~~~~~k~~~~i~-~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~-~~~~~~i~~~ 89 (193)
T cd00177 15 EGWKLVKEKDGVKIYTK---PYEDSGLKLLKAEGVIP-ASPEQVFELLMDIDLRKKWDKNFEEFEVIEE-IDEHTDIIYY 89 (193)
T ss_pred CCeEEEEECCcEEEEEe---cCCCCCceeEEEEEEEC-CCHHHHHHHHhCCchhhchhhcceEEEEEEE-eCCCeEEEEE
Confidence 58999999999999974 44445678899999997 7999999999999999999999999999998 7888999999
Q ss_pred eccCC-CCCCceEEEEEEEEEecCCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc-
Q 015638 187 IKKFP-LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN- 264 (403)
Q Consensus 187 v~k~P-~vS~RDfV~~rri~~~~d~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~- 264 (403)
..+.| ++++||||+++.....+++.++++.+|++|+.+|+.+++||+..+.+||+|+|. +++.|+++|+.+.||+|+
T Consensus 90 ~~~~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~-~~~~~~vt~~~~~D~~g~i 168 (193)
T cd00177 90 KTKPPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPL-DPGKTKVTYVLQVDPKGSI 168 (193)
T ss_pred EeeCCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEEC-CCCCEEEEEEEeeCCCCCc
Confidence 99888 499999999987666666889999999999999999999999999999999997 667999999999999999
Q ss_pred -hhhHHHhHHhhHHHHHHHHHHHH
Q 015638 265 -VGMAKLAFAKGIWSYVCKMDNAL 287 (403)
Q Consensus 265 -~~LvN~~v~~gm~~~lkkL~~al 287 (403)
.|++|+++...+..+++.++...
T Consensus 169 P~~~~~~~~~~~~~~~~~~~~~~~ 192 (193)
T cd00177 169 PKSLVNSAAKKQLASFLKDLRKAK 192 (193)
T ss_pred cHHHHHhhhhhccHHHHHHHHHhh
Confidence 89999999999999998887643
No 17
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=99.97 E-value=4.2e-29 Score=232.82 Aligned_cols=183 Identities=15% Similarity=0.158 Sum_probs=152.3
Q ss_pred HHHHHHHhhcccCCCCCceEEEecCCcEEEEeeccccCCC-CCeEEEEEEEeccCCHHHHHHHhcCccchhhHHhhccee
Q 015638 92 LKFLIETLEDNFSENDKWENVIDKRNNLLYYNARCCKPKV-GPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEH 170 (403)
Q Consensus 92 le~ll~~l~e~~~~~~~Welv~dk~gikVy~ka~R~~p~~-G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~ 170 (403)
.++|++...+ ..++|++..+++|++||+| ..+++ ....||++++|+ ++++++++.++| .|++||+++.++
T Consensus 7 ~~~ll~~~~~---~~~~W~~~~~~~gi~I~~k---~~~~~~~l~~~K~~~~v~-a~~~~v~~~l~d--~r~~Wd~~~~~~ 77 (197)
T cd08869 7 VQDLLREARD---KSKGWVSVSSSDHVELAFK---KVDDGHPLRLWRASTEVE-APPEEVLQRILR--ERHLWDDDLLQW 77 (197)
T ss_pred HHHHHHHHhh---ccCCceEEecCCcEEEEEE---eCCCCCcEEEEEEEEEeC-CCHHHHHHHHHH--HHhccchhhheE
Confidence 4455544333 4689999999999999985 23333 467899999997 899999998876 589999999999
Q ss_pred EEEEEecCCCeEEEEEeccCC-CCCCceEEEEEEEEE-ecCCEEEEEEEeccCC-CCCCCCCcEEEEEeeeEEEEEeeCC
Q 015638 171 KQLQVDKTNGTEIGRIIKKFP-LLTPREYVLAWRLWE-GRDQTFYCFSKECDHP-LAPPQRKYVRVTYFRSGWHIKKVPG 247 (403)
Q Consensus 171 evLE~~~~~gt~Ivy~v~k~P-~vS~RDfV~~rri~~-~~d~~~~i~~kSVdhp-~~P~~kg~VRv~~~~SgwvIrpv~g 247 (403)
++||+ ++++++|+|++.+.| ++++||||+.+.... .+++.+++..+|++|| .+|+ |||||..+.+||.|+|+ +
T Consensus 78 ~vie~-id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~--g~VR~~~~~~g~~i~p~-~ 153 (197)
T cd08869 78 KVVET-LDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL--GGVRAVVLASRYLIEPC-G 153 (197)
T ss_pred EEEEE-ecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC--CCEEEEEEeeeEEEEEC-C
Confidence 99999 889999999998776 689999999865433 4567889999999996 6666 99999999999999996 5
Q ss_pred CCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHHH
Q 015638 248 RDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALR 288 (403)
Q Consensus 248 ~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al~ 288 (403)
+++|+|||+.|+||||+ .|++|... +.++..|++|+.-.+
T Consensus 154 ~~~t~vty~~~~Dp~G~iP~wl~N~~~-~~~~~~~~~l~~~~~ 195 (197)
T cd08869 154 SGKSRVTHICRVDLRGRSPEWYNKVYG-HLCARELLRIRDSFR 195 (197)
T ss_pred CCCeEEEEEEEECCCCCCCceeecchH-hHHHHHHHHHHhhcc
Confidence 67899999999999999 89988765 788889998887544
No 18
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.97 E-value=3.7e-29 Score=235.19 Aligned_cols=166 Identities=12% Similarity=0.132 Sum_probs=143.5
Q ss_pred CCCCceEEEecCCcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEE
Q 015638 105 ENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIG 184 (403)
Q Consensus 105 ~~~~Welv~dk~gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Iv 184 (403)
++++|++..+++||+||++ ..++ ....|+++++| ++|++++++++.|.+.|++||+++.++++||+ +++++.|+
T Consensus 20 ~~~gW~l~~~~~gI~Vy~k---~~~~-~~~~~~ge~~v-~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~-~~~d~~i~ 93 (205)
T cd08874 20 ATAGWSYQCLEKDVVIYYK---VFNG-TYHGFLGAGVI-KAPLATVWKAVKDPRTRFLYDTMIKTARIHKT-FTEDICLV 93 (205)
T ss_pred ccCCcEEEecCCCEEEEEe---cCCC-CcceEEEEEEE-cCCHHHHHHHHhCcchhhhhHHhhhheeeeee-cCCCeEEE
Confidence 3579999999999999974 2233 46679999999 49999999999999999999999999999998 89999999
Q ss_pred EEeccCC-CC--CCceEEEEEEEEEecCCEEEEEEEeccCCCCCCCC-CcEEEEEeeeEEEEEeeCC--CCceEEEEEEE
Q 015638 185 RIIKKFP-LL--TPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQR-KYVRVTYFRSGWHIKKVPG--RDACEIRIFHQ 258 (403)
Q Consensus 185 y~v~k~P-~v--S~RDfV~~rri~~~~d~~~~i~~kSVdhp~~P~~k-g~VRv~~~~SgwvIrpv~g--~~~c~VT~i~q 258 (403)
|++...| ++ ++||||+.+. +..+++.+++..+|++||.+|+.+ ||||++...+||.|+|+++ ++.|+|||+.|
T Consensus 94 y~~~~~Pwp~~~~~RDfV~l~~-~~~~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q 172 (205)
T cd08874 94 YLVHETPLCLLKQPRDFCCLQV-EAKEGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQ 172 (205)
T ss_pred EEEecCCCCCCCCCCeEEEEEE-EEECCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEE
Confidence 9998655 34 9999999864 555566667889999999999986 9999999999999999643 35899999999
Q ss_pred ecCC-Cc--hhhHHHhHHhhHH
Q 015638 259 EDAG-LN--VGMAKLAFAKGIW 277 (403)
Q Consensus 259 ~Dpg-G~--~~LvN~~v~~gm~ 277 (403)
+||| |. .||+|.++..++.
T Consensus 173 ~DPggg~iP~~l~N~~~~~~p~ 194 (205)
T cd08874 173 VALCGPDVPAQLLSSLSKRQPL 194 (205)
T ss_pred ECCCCCCCCHHHHhHHHHhccH
Confidence 9999 56 8999998887654
No 19
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.96 E-value=6.4e-28 Score=221.81 Aligned_cols=176 Identities=15% Similarity=0.228 Sum_probs=155.7
Q ss_pred CCCceEEEecCCcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEE
Q 015638 106 NDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGR 185 (403)
Q Consensus 106 ~~~Welv~dk~gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy 185 (403)
+.+|+++++++|++||++ ..++++...||++++++ ++|+++++++.|.+.+++||+.+.++++||+ .+++..+.|
T Consensus 16 ~~~W~~~~~~~~v~v~~~---~~~~~~~~~~k~~~~i~-~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~-~~~~~~i~~ 90 (195)
T cd08876 16 DGDWQLVKDKDGIKVYTR---DVEGSPLKEFKAVAEVD-ASIEAFLALLRDTESYPQWMPNCKESRVLKR-TDDNERSVY 90 (195)
T ss_pred CCCCEEEecCCCeEEEEE---ECCCCCeEEEEEEEEEe-CCHHHHHHHHhhhHhHHHHHhhcceEEEeec-CCCCcEEEE
Confidence 457999999999999974 34555568899999997 8999999999999999999999999999998 677789999
Q ss_pred EeccCCC-CCCceEEEEEEEEEec-CCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCC
Q 015638 186 IIKKFPL-LTPREYVLAWRLWEGR-DQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGL 263 (403)
Q Consensus 186 ~v~k~P~-vS~RDfV~~rri~~~~-d~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG 263 (403)
...++|+ +++||||+.++.+... ++.+++...+++|+ +|++++|||+..+.++|.|+|+ ++++|+|+|+.+.||+|
T Consensus 91 ~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~-~P~~~~~vR~~~~~~~~~i~~~-~~~~t~vt~~~~~dp~g 168 (195)
T cd08876 91 TVIDLPWPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA-LPEQKGYVRIKTVEGQWTFTPL-GNGKTRVTYQAYADPGG 168 (195)
T ss_pred EEEecccccCCceEEEEEEEEEcCCCCEEEEEeecCCcc-CCCCCCeEEceeceeeEEEEEC-CCCeEEEEEEEEeCCCC
Confidence 9888885 9999999876654433 57788888899887 8989999999999999999997 45689999999999999
Q ss_pred c--hhhHHHhHHhhHHHHHHHHHHHHH
Q 015638 264 N--VGMAKLAFAKGIWSYVCKMDNALR 288 (403)
Q Consensus 264 ~--~~LvN~~v~~gm~~~lkkL~~al~ 288 (403)
+ .+++|+++.+.+++++++|++.++
T Consensus 169 ~iP~~lv~~~~~~~~~~~l~~l~~~~~ 195 (195)
T cd08876 169 SIPGWLANAFAKDAPYNTLENLRKQLK 195 (195)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9 899999999999999999998763
No 20
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=99.96 E-value=1.2e-27 Score=228.84 Aligned_cols=191 Identities=14% Similarity=0.178 Sum_probs=152.5
Q ss_pred CCCHHHHHHHHHHhhcccCCCCCceEEEecCCcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHHHhcCccchhhHHh
Q 015638 86 IVSDADLKFLIETLEDNFSENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDK 165 (403)
Q Consensus 86 ~vseedle~ll~~l~e~~~~~~~Welv~dk~gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD~ 165 (403)
.++...++-|..+ . .+++|++..+++||+||++ +.++...||++++++ +|+++++++|.|.++|++||.
T Consensus 39 ~~~~~~~~~l~~l-~----~~~~W~l~~~k~gIkVytr-----~~s~~l~fk~e~~vd-~s~~~v~dlL~D~~~R~~WD~ 107 (235)
T cd08873 39 YLSYGNVTALKRL-A----AKSDWTVASSTTSVTLYTL-----EQDGVLSFCVELKVQ-TCASDAFDLLSDPFKRPEWDP 107 (235)
T ss_pred EEeeCCHHHHhhc-c----ccCCCEEEEcCCCEEEEEe-----cCCCceEEEEEEEec-CCHHHHHHHHhCcchhhhhhh
Confidence 3455555544333 2 2479999999999999973 246677899999985 999999999999999999999
Q ss_pred hcceeEEEEEecCCCeEEEEEeccCC-CCCCceEEEEEEEEE-ecC-CEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEE
Q 015638 166 TVVEHKQLQVDKTNGTEIGRIIKKFP-LLTPREYVLAWRLWE-GRD-QTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHI 242 (403)
Q Consensus 166 ~v~e~evLE~~~~~gt~Ivy~v~k~P-~vS~RDfV~~rri~~-~~d-~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvI 242 (403)
++.++++|++ ++++..++|+...+| +++|||||+.+.+++ .++ +.|.|..+|++||.+|+++||||++...+||.|
T Consensus 108 ~~~e~evI~~-id~d~~iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I 186 (235)
T cd08873 108 HGRSCEEVKR-VGEDDGIYHTTMPSLTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVI 186 (235)
T ss_pred cccEEEEEEE-eCCCcEEEEEEcCCCCCCCCceEEEEEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEE
Confidence 9999999999 888888899888888 699999999876655 333 458899999999999999999999999999999
Q ss_pred EeeCCCCceEEEEEEEecCCCchhhHHHhHHhhHHHHHHHHHHHHHhhh
Q 015638 243 KKVPGRDACEIRIFHQEDAGLNVGMAKLAFAKGIWSYVCKMDNALRNYA 291 (403)
Q Consensus 243 rpv~g~~~c~VT~i~q~DpgG~~~LvN~~v~~gm~~~lkkL~~al~kY~ 291 (403)
+|. +++.|+|+|+.|+|||.-.++.--+ .|.-..+..--++|.+|.
T Consensus 187 ~p~-~~~~t~VtY~~~~dPg~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 232 (235)
T cd08873 187 RQD-CGTCTEVSYYNETNPKLLSYVTCNL--AGLSALYCRTFHCCEQFL 232 (235)
T ss_pred EEC-CCCcEEEEEEEEcCCCccceeeecc--hhhhHHHHHHHHHHHHHh
Confidence 995 6779999999999999875443211 233334444445555554
No 21
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.96 E-value=1.1e-27 Score=225.22 Aligned_cols=179 Identities=17% Similarity=0.187 Sum_probs=159.3
Q ss_pred CCCCceEEEecCCcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEE
Q 015638 105 ENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIG 184 (403)
Q Consensus 105 ~~~~Welv~dk~gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Iv 184 (403)
++++|++..+++|+++||+ ..+.++...+|++++|+ +|++.+++++.|.+.+++|++++.+.+.|++ ++.+..|+
T Consensus 20 ~~~~W~~~~~~~~i~v~~r---~~~~~~~~~~k~e~~i~-~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~-~~~~~~v~ 94 (215)
T cd08877 20 ESDGWTLQKESEGIRVYYK---FEPDGSLLSLRMEGEID-GPLFNLLALLNEVELYKTWVPFCIRSKKVKQ-LGRADKVC 94 (215)
T ss_pred CCCCcEEeccCCCeEEEEE---eCCCCCEEEEEEEEEec-CChhHeEEEEehhhhHhhhcccceeeEEEee-cCCceEEE
Confidence 3579999999999999984 45555578899999996 7999999999999999999999999999998 78889999
Q ss_pred EEeccCCC-CCCceEEEEEE-EEEe-cCCEEEEEEEeccCCC---------CCCCC-CcEEEEEeeeEEEEEeeCCCCce
Q 015638 185 RIIKKFPL-LTPREYVLAWR-LWEG-RDQTFYCFSKECDHPL---------APPQR-KYVRVTYFRSGWHIKKVPGRDAC 251 (403)
Q Consensus 185 y~v~k~P~-vS~RDfV~~rr-i~~~-~d~~~~i~~kSVdhp~---------~P~~k-g~VRv~~~~SgwvIrpv~g~~~c 251 (403)
|+..++|+ +++||+|+... .-+. ++|.++++.+|++|+. +|+.+ |+||+....+||.|+|+ +++.|
T Consensus 95 y~~~~~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~-~~~~t 173 (215)
T cd08877 95 YLRVDLPWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPI-SPTKC 173 (215)
T ss_pred EEEEeCceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEc-CCCCe
Confidence 99999994 99999997533 2223 6788999999999875 69888 99999999999999997 66789
Q ss_pred EEEEEEEecCCCc---hhhHHHhHHhhHHHHHHHHHHHHHh
Q 015638 252 EIRIFHQEDAGLN---VGMAKLAFAKGIWSYVCKMDNALRN 289 (403)
Q Consensus 252 ~VT~i~q~DpgG~---~~LvN~~v~~gm~~~lkkL~~al~k 289 (403)
.++|+.+.||||+ .|++|+++++.+..++.+|++++++
T Consensus 174 ~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 174 YLRFVANVDPKMSLVPKSLLNFVARKFAGLLFEKIQKAAKN 214 (215)
T ss_pred EEEEEEEcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999987 8999999999999999999999875
No 22
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=99.96 E-value=2.3e-27 Score=226.66 Aligned_cols=174 Identities=16% Similarity=0.184 Sum_probs=143.9
Q ss_pred CCCceEEEecCCcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEE
Q 015638 106 NDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGR 185 (403)
Q Consensus 106 ~~~Welv~dk~gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy 185 (403)
+++|++..+++|++||++ ++++...||+++.+ ++|+++++++|.|.++|++||.++.++++|++ ++++.. +|
T Consensus 55 ~~~W~l~~dkdgIkVytr-----~~s~~l~fk~e~~v-dvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~q-ld~~~~-vY 126 (236)
T cd08914 55 KSGWEVTSTVEKIKIYTL-----EEHDVLSVWVEKHV-KRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDW-VSEDDQ-IY 126 (236)
T ss_pred cCCCEEEEccCCEEEEEe-----cCCCcEEEEEEEEE-cCCHHHHHHHHhChhhhchhHHhhceEEEEEE-eCCCcC-EE
Confidence 479999999999999983 35667789999988 59999999999999999999999999999999 777777 56
Q ss_pred EeccCC--CCCCceEEEEEEEEEec-CC-EEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecC
Q 015638 186 IIKKFP--LLTPREYVLAWRLWEGR-DQ-TFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDA 261 (403)
Q Consensus 186 ~v~k~P--~vS~RDfV~~rri~~~~-d~-~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~Dp 261 (403)
++.++| |+++||||+.+..+... ++ .|++..+|++||.+|+++||||++.+..||.|+|+ +++.|+|||+.|+||
T Consensus 127 ~~~~pPw~Pvk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~~I~pl-~~~~~~VtY~~~~dP 205 (236)
T cd08914 127 HITCPIVNNDKPKDLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGFLIHAI-DSNSCTVSYFNQISA 205 (236)
T ss_pred EEecCCCCCCCCceEEEEEEEEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEEEEEEc-CCCcEEEEEEEEcCC
Confidence 666766 58999999976655443 55 48889999999999999999999999999999995 777999999999999
Q ss_pred CCc--hhhHHHhHHhhHHHHHHHHHHHHHhhhh
Q 015638 262 GLN--VGMAKLAFAKGIWSYVCKMDNALRNYAV 292 (403)
Q Consensus 262 gG~--~~LvN~~v~~gm~~~lkkL~~al~kY~~ 292 (403)
|+ .|++|.+ |.-..+..--++|.+|.+
T Consensus 206 -g~lp~~~~n~~---~~~~~~~~~~~~~~~~~~ 234 (236)
T cd08914 206 -SILPYFAGNLG---GWSKSIEETAASCIQFLE 234 (236)
T ss_pred -ccchheEEecc---hhhhHHHHHHHHHHHHHh
Confidence 66 6888853 333334444455555543
No 23
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=99.95 E-value=6e-27 Score=224.94 Aligned_cols=163 Identities=16% Similarity=0.171 Sum_probs=139.2
Q ss_pred CCCceEEEecCCcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEE
Q 015638 106 NDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGR 185 (403)
Q Consensus 106 ~~~Welv~dk~gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy 185 (403)
+++|++.++++||+||++ +.+....||++++++ +|+++++++|.|.++|++||.++.++++|++ ++++.. +|
T Consensus 58 ~~~W~l~~~~~gI~Vyt~-----~~s~~~~fK~e~~vd-~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~-id~~~~-vY 129 (240)
T cd08913 58 KDNWVLSSEKNQVRLYTL-----EEDKFLSFKVEMVVH-VDAAQAFLLLSDLRRRPEWDKHYRSCELVQQ-VDEDDA-IY 129 (240)
T ss_pred cCCCEEEEccCCEEEEEE-----eCCCccEEEEEEEEc-CCHHHHHHHHhChhhhhhhHhhccEEEEEEe-cCCCcE-EE
Confidence 468999999999999973 233346789999884 9999999999999999999999999999999 777765 56
Q ss_pred EeccCC---CCCCceEEEEEEEEEe-c-CCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEec
Q 015638 186 IIKKFP---LLTPREYVLAWRLWEG-R-DQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQED 260 (403)
Q Consensus 186 ~v~k~P---~vS~RDfV~~rri~~~-~-d~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~D 260 (403)
++...| ++++||||+.+++... + ++.|++..+++.||.+|+++|||||+...+||+|.|. +++.|+|+|+.|+|
T Consensus 130 ~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~-~~~~t~vtY~~~~d 208 (240)
T cd08913 130 HVTSPSLSGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEE-SDQLTKVSYYNQAT 208 (240)
T ss_pred EEecCCCCCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEEC-CCCcEEEEEEEEeC
Confidence 665443 5899999998766443 2 3367788999999999999999999999999999995 66789999999999
Q ss_pred CCCc--hhhHHHhHHhhHHH
Q 015638 261 AGLN--VGMAKLAFAKGIWS 278 (403)
Q Consensus 261 pgG~--~~LvN~~v~~gm~~ 278 (403)
|| . .|++|.++.+.+..
T Consensus 209 PG-~LP~~~~N~~~~~~p~~ 227 (240)
T cd08913 209 PG-VLPYISTDIAGLSSEFY 227 (240)
T ss_pred Cc-cccHHHhhhhhhccchh
Confidence 97 7 89999998877755
No 24
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.95 E-value=2.2e-26 Score=214.91 Aligned_cols=184 Identities=16% Similarity=0.205 Sum_probs=154.6
Q ss_pred HHHHHHHHHHhhcccCCCCCceEEEecCCcEEEEeeccccCCCC--CeEEEEEEEeccCCHHHHHHHhcCccchhhHHhh
Q 015638 89 DADLKFLIETLEDNFSENDKWENVIDKRNNLLYYNARCCKPKVG--PLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKT 166 (403)
Q Consensus 89 eedle~ll~~l~e~~~~~~~Welv~dk~gikVy~ka~R~~p~~G--~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~ 166 (403)
++..+.|+.+.. ....||....++++++|++| +.++| +..+|+.++|++.|++.+.+++.| |..||++
T Consensus 12 ~~~~~~~lre~~---ek~kgW~~~~~~~~vev~~k----k~~d~~~l~lwk~s~ei~~~p~~vl~rvL~d---R~~WD~~ 81 (205)
T cd08907 12 EDNVQCLLREAS---ERFKGWHSAPGPDNTELACK----KVGDGHPLRLWKVSTEVEAPPSVVLQRVLRE---RHLWDED 81 (205)
T ss_pred HHHHHHHHHHhh---hccCCceeecCCCCcEEEEE----eCCCCCceEEEEEEEEecCCCHHHHHHHhhc---hhhhhHH
Confidence 344555554433 34689999999999999995 34444 557899999999999999999998 9999999
Q ss_pred cceeEEEEEecCCCeEEEEEeccCC-CCCCceEEEEEEEEE--ecCCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEE
Q 015638 167 VVEHKQLQVDKTNGTEIGRIIKKFP-LLTPREYVLAWRLWE--GRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIK 243 (403)
Q Consensus 167 v~e~evLE~~~~~gt~Ivy~v~k~P-~vS~RDfV~~rri~~--~~d~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIr 243 (403)
|.+.++||+ ++++++|+||+.+.| ++.+||||..|. |. ...|.+++++.||+|+.+|+.+| |||..+.+||.|+
T Consensus 82 m~e~~~Ie~-Ld~n~dI~yY~~~~~~p~p~RDfv~lRs-W~~~l~~g~~iI~~~SV~H~~~pp~~g-VRa~~l~sgYlIe 158 (205)
T cd08907 82 LLHSQVIEA-LENNTEVYHYVTDSMAPHPRRDFVVLRM-WRSDLPRGGCLLVSQSVDHDNPQLEAG-VRAVLLTSQYLIE 158 (205)
T ss_pred HHhhhhhee-ecCCCEEEEEEecCCCCCCCceEEEEEE-EccCCCCCCEEEEEecccCCcCCCCCC-eEEEEEeccEEEE
Confidence 999999999 999999999998665 799999998865 53 33457999999999999999999 9999999999999
Q ss_pred eeCCCCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHH
Q 015638 244 KVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNAL 287 (403)
Q Consensus 244 pv~g~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al 287 (403)
|. |.++|++||+.++||+|+ .|. |.+...-+-..+.+|+...
T Consensus 159 p~-g~g~s~ltyi~rvD~rG~~P~Wy-nk~~g~~~a~~l~~ir~sF 202 (205)
T cd08907 159 PC-GMGRSRLTHICRADLRGRSPDWY-NKVFGHLCAMEVARIRDSF 202 (205)
T ss_pred EC-CCCCeEEEEEEEeCCCCCCcHHH-HHhHHHHHHHHHHHHHhhc
Confidence 95 777999999999999999 677 8887777777776666543
No 25
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.94 E-value=3.9e-25 Score=207.87 Aligned_cols=171 Identities=16% Similarity=0.152 Sum_probs=141.8
Q ss_pred CCCceEEEecCCcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEE
Q 015638 106 NDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGR 185 (403)
Q Consensus 106 ~~~Welv~dk~gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy 185 (403)
-.+|......++.+++|+ +..+++++..+|+.+.++ ++|++|++.+.+ .|.+||.++.+.++||+ ++++++|+|
T Consensus 26 fk~w~~~~~~~~~e~~yk--K~~d~~~lk~~r~~~ei~-~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~-ld~~tdi~~ 99 (205)
T cd08909 26 FKGWISCSSSDNTELAYK--KVGDGNPLRLWKVSVEVE-APPSVVLNRVLR--ERHLWDEDFLQWKVVET-LDKQTEVYQ 99 (205)
T ss_pred hcCCcccCCcCCeEEEEe--cCCCCCceEEEEEEEEeC-CCHHHHHHHHHh--hHhhHHhhcceeEEEEE-eCCCcEEEE
Confidence 578999989999999996 345556678899999997 788888887765 79999999999999999 888999999
Q ss_pred EeccCC-CCCCceEEEEEEEEEe-cCCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCC
Q 015638 186 IIKKFP-LLTPREYVLAWRLWEG-RDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGL 263 (403)
Q Consensus 186 ~v~k~P-~vS~RDfV~~rri~~~-~d~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG 263 (403)
++.+.| |+++||||..|+++.. ++|.|+++++|++|+++|+. |+|||..+.+||.|+|. +++.|+|+|+.++||||
T Consensus 100 y~~~~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~-g~VRa~~~~~gylI~P~-~~g~trvt~i~~vDpkG 177 (205)
T cd08909 100 YVLNCMAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLL-GGVRAVVLDSQYLIEPC-GSGKSRLTHICRVDLKG 177 (205)
T ss_pred EEeecCCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCC-CcEEEEEEcCcEEEEEC-CCCCEEEEEEEEecCCC
Confidence 997554 7899999998765433 47889999999999999985 99999999999999996 55689999999999999
Q ss_pred c--hhhHHHhHHhhHHHHHHHHHH
Q 015638 264 N--VGMAKLAFAKGIWSYVCKMDN 285 (403)
Q Consensus 264 ~--~~LvN~~v~~gm~~~lkkL~~ 285 (403)
+ .|++|. +.+-+-..+.+|+.
T Consensus 178 ~~P~W~~n~-~g~~~~~~~~~~r~ 200 (205)
T cd08909 178 HSPEWYNKG-FGHLCAAEAARIRN 200 (205)
T ss_pred CChHHHHHh-HHHHHHHHHHHHHh
Confidence 9 788775 34444444444443
No 26
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.94 E-value=6.8e-25 Score=206.14 Aligned_cols=183 Identities=16% Similarity=0.169 Sum_probs=149.8
Q ss_pred HHHHHHHHHHhhcccCCCCCceEEEecCCcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHHHhcCccchhhHHhhcc
Q 015638 89 DADLKFLIETLEDNFSENDKWENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVV 168 (403)
Q Consensus 89 eedle~ll~~l~e~~~~~~~Welv~dk~gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~ 168 (403)
++-+++|+.+..++ -.+|..+...+++.+.++ +..++++...+|++++|+ ++++++++.+.|. |.+||.++.
T Consensus 12 ~~~~~~l~~e~~~k---~k~w~~~~~~~~~el~~~--k~~~gs~l~~~r~~~~i~-a~~~~vl~~lld~--~~~Wd~~~~ 83 (204)
T cd08908 12 QDCVDGLFKEVKEK---FKGWVSYSTSEQAELSYK--KVSEGPPLRLWRTTIEVP-AAPEEILKRLLKE--QHLWDVDLL 83 (204)
T ss_pred HHHHHHHHHHHHHH---hcCCcccCCCCcEEEEEe--ccCCCCCcEEEEEEEEeC-CCHHHHHHHHHhh--HHHHHHHhh
Confidence 45556666655554 478999988999999986 344555678899999997 8999999999877 999999999
Q ss_pred eeEEEEEecCCCeEEEEEeccCC-CCCCceEEEEEEEE-EecCCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeC
Q 015638 169 EHKQLQVDKTNGTEIGRIIKKFP-LLTPREYVLAWRLW-EGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVP 246 (403)
Q Consensus 169 e~evLE~~~~~gt~Ivy~v~k~P-~vS~RDfV~~rri~-~~~d~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~ 246 (403)
+.++||+ ++++++|+|++.+.| |+++||||..|... +.+++.+++...|++|+.+|++ +|||..+.++|.|+|.
T Consensus 84 e~~vIe~-ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~--~VR~~~~~~~w~i~P~- 159 (204)
T cd08908 84 DSKVIEI-LDSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVA--GVRVNVLLSRYLIEPC- 159 (204)
T ss_pred heEeeEe-cCCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcC--ceEEEEEeeEEEEEEC-
Confidence 9999999 899999999998777 69999999876533 2456788899999999999966 6999999999999996
Q ss_pred CCCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHH
Q 015638 247 GRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMD 284 (403)
Q Consensus 247 g~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~ 284 (403)
++++|+|||+.|+||||. .|++|.+ .+-+-..+.+|+
T Consensus 160 g~g~t~vtyi~~~DPgG~iP~W~~N~~-g~~~~~~~~~~r 198 (204)
T cd08908 160 GSGKSKLTYMCRIDLRGHMPEWYTKSF-GHLCAAEVVKIR 198 (204)
T ss_pred CCCcEEEEEEEEeCCCCCCcHHHHhhH-HHHHHHHHHHHH
Confidence 667999999999999999 8999964 233333444443
No 27
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=99.93 E-value=5.9e-25 Score=234.18 Aligned_cols=183 Identities=16% Similarity=0.186 Sum_probs=147.8
Q ss_pred CCCCceEEEecCCcEEEEeeccccCC---CC-CeEEEEEEEeccCCHHHHHHHhcCcc-chhhHHhhcceeEEEEEecCC
Q 015638 105 ENDKWENVIDKRNNLLYYNARCCKPK---VG-PLKYLSVTVFENCTPEILRDFYMDND-YRVRWDKTVVEHKQLQVDKTN 179 (403)
Q Consensus 105 ~~~~Welv~dk~gikVy~ka~R~~p~---~G-~~~yK~~tv~edaspe~V~d~l~D~e-~R~~WD~~v~e~evLE~~~~~ 179 (403)
+...|+++...+|.+++..+ .+.+ .+ ...+|++++++ ++|++|++++++.+ .|.+||.++.++++||+ +++
T Consensus 196 ~~~~Wr~~~c~NGlRiF~e~--~~~~~~~~~~~~~mKavGVV~-aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~-ID~ 271 (719)
T PLN00188 196 SRKHWRLLQCQNGLRIFEEL--LEVDYLPRSCSRAMKAVGVVE-ATCEEIFELVMSMDGTRFEWDCSFQYGSLVEE-VDG 271 (719)
T ss_pred ccCCeEEEEeeccceeehhh--hccccccccCCceeEEEEEec-CCHHHHHHHHhccCcccccchhcccceEEEEE-ecC
Confidence 45689999999999999532 1111 11 35789999996 99999999998765 99999999999999999 999
Q ss_pred CeEEEEEecc---CC-CCCCceEEEEEEEEEecCCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCC---CceE
Q 015638 180 GTEIGRIIKK---FP-LLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGR---DACE 252 (403)
Q Consensus 180 gt~Ivy~v~k---~P-~vS~RDfV~~rri~~~~d~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~---~~c~ 252 (403)
+++|+|...+ +| ++++||||++|++.+.+||.|+|+.+|++||.+|+++|||||++..+||+|.|++++ +.|.
T Consensus 272 htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~l 351 (719)
T PLN00188 272 HTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQ 351 (719)
T ss_pred CeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceE
Confidence 9999998864 33 589999999999888899999999999999999999999999999999999998644 5999
Q ss_pred EEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHHHhhhhh
Q 015638 253 IRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRNYAVV 293 (403)
Q Consensus 253 VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al~kY~~~ 293 (403)
|+++.|+|++|| .+.- ..-..-....|+. .++++.|-.+
T Consensus 352 v~~~lqtDlkGW~~~y~~-s~~~~~~l~mL~~-VAgLrE~~~~ 392 (719)
T PLN00188 352 VQHLMQIDLKGWGVGYIP-SFQQHCLLQMLNS-VAGLREWFSQ 392 (719)
T ss_pred EEEEEEEccCccccccCc-cccccchHHHHHH-HHHHHHHHhc
Confidence 999999999999 3322 2222222223333 3666666554
No 28
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.70 E-value=6.7e-17 Score=164.87 Aligned_cols=181 Identities=12% Similarity=0.177 Sum_probs=147.7
Q ss_pred CCCCceEEEecCCcEEEEeeccccCCCCCe--EEEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeE
Q 015638 105 ENDKWENVIDKRNNLLYYNARCCKPKVGPL--KYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTE 182 (403)
Q Consensus 105 ~~~~Welv~dk~gikVy~ka~R~~p~~G~~--~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~ 182 (403)
+.+.|+++.++..+++|. |...++|.. -.|+...+.++++.++..+++|.++|.+|+.++..+.++|. +.+++-
T Consensus 401 ~d~nwqlFaeegemkmy~---re~eeng~~~Dplka~hav~gvta~e~chyf~~~~~rndwettle~~~vve~-is~d~~ 476 (611)
T KOG1739|consen 401 GDANWQLFAEEGEMKMYR---REVEENGIVLDPLKATHAVKGVTAHEVCHYFWNVDVRNDWETTLENFHVVET-ISDDAI 476 (611)
T ss_pred ccchhhhhcccCCccccc---eeeccCCcccCccccchhhcchhHHHHHHHHcChhhhcchhhhhhhceeeee-ecCCeE
Confidence 445699999999999994 455566633 26787778899999999999999999999999999999999 999999
Q ss_pred EEEEecc-CCCCCCceEEEEEEEEEe------cCCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCC--------
Q 015638 183 IGRIIKK-FPLLTPREYVLAWRLWEG------RDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPG-------- 247 (403)
Q Consensus 183 Ivy~v~k-~P~vS~RDfV~~rri~~~------~d~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g-------- 247 (403)
|+|..-| .-|-++||-.++.++++. +.+.+++++.+++|.++|-++.+||+....+.-+-.-++.
T Consensus 477 ~~~qthkrvwpasqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~cvr~~ltv~micqt~v~~p~~~q~l~ 556 (611)
T KOG1739|consen 477 IIYQTHKRVWPASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNRCVRAKLTVAMICQTLVSPPEGNQELS 556 (611)
T ss_pred EEEecccccCCCCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCceEEEeeeeeeeeecccCCcccCCccc
Confidence 9998843 334699999887666542 2356888899999999999999999998765444322221
Q ss_pred --CCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHHHh
Q 015638 248 --RDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRN 289 (403)
Q Consensus 248 --~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al~k 289 (403)
+-.|++||+.+++|||| ...+..+.++..|+||+.+-..+++
T Consensus 557 rdd~~ckityvs~vnpggwapasalravykreypkflkrft~yv~~ 602 (611)
T KOG1739|consen 557 RDDILCKITYVSNVNPGGWAPASALRAVYKREYPKFLKRFTSYVQE 602 (611)
T ss_pred ccceeEEEEEEeeeCCCCcccHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 12799999999999999 7899999999999999888777665
No 29
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=99.49 E-value=1.6e-12 Score=124.31 Aligned_cols=195 Identities=16% Similarity=0.182 Sum_probs=147.0
Q ss_pred CCHHHHHHHHHHhhcccCCCCCceEEEecC----CcEEEEeeccccC---CCCC--eEEEEEEEeccCCHHHHHHHhcCc
Q 015638 87 VSDADLKFLIETLEDNFSENDKWENVIDKR----NNLLYYNARCCKP---KVGP--LKYLSVTVFENCTPEILRDFYMDN 157 (403)
Q Consensus 87 vseedle~ll~~l~e~~~~~~~Welv~dk~----gikVy~ka~R~~p---~~G~--~~yK~~tv~edaspe~V~d~l~D~ 157 (403)
+.++.+++|+.+.+.. +..|....+.+ |..=|.+.-.... ..|. -.=|..+.+. ..+..+.++|+|.
T Consensus 7 lA~~am~Ell~~a~~~---~plWi~~~~~~~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~-m~~~~lVe~lmD~ 82 (229)
T cd08875 7 LAEEAMDELLKLAQGG---EPLWIKSPGMKPEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVM-MNAIKLVEILMDV 82 (229)
T ss_pred HHHHHHHHHHHHhccC---CCCceecCCCCccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEe-cCHHHHHHHHhCh
Confidence 3567788888776653 56898754432 1111211000000 0111 1235666664 8999999999998
Q ss_pred cchhh-HHhhcceeEEEEEecCCC--------eEEEEEeccCC--CCCCceEEEEEEEEEecCCEEEEEEEeccCC-CCC
Q 015638 158 DYRVR-WDKTVVEHKQLQVDKTNG--------TEIGRIIKKFP--LLTPREYVLAWRLWEGRDQTFYCFSKECDHP-LAP 225 (403)
Q Consensus 158 e~R~~-WD~~v~e~evLE~~~~~g--------t~Ivy~v~k~P--~vS~RDfV~~rri~~~~d~~~~i~~kSVdhp-~~P 225 (403)
+...+ ++..+...++++. ++.| .+++|.....| ++.+|||+++|+..+.+||.+.|+..|+++. ..|
T Consensus 83 ~kW~~~Fp~iv~~a~tl~v-istg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~~p 161 (229)
T cd08875 83 NKWSELFPGIVSKAKTLQV-ISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQTAP 161 (229)
T ss_pred hhhhhhhhhhcceeeEEEE-eeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeecccccCC
Confidence 87666 6779999999998 5554 57888777666 5899999999999888999999999999998 678
Q ss_pred CCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc------hhhHHHhHHhhHHHHHHHHHHHH
Q 015638 226 PQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN------VGMAKLAFAKGIWSYVCKMDNAL 287 (403)
Q Consensus 226 ~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~------~~LvN~~v~~gm~~~lkkL~~al 287 (403)
..++++|++..+|||+|+|.+ ++.|+||++-|+|..-+ ..+++.++..|.--++..|...|
T Consensus 162 ~~~~~~r~~~~PSGcLIq~~~-nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqc 228 (229)
T cd08875 162 PPASFVRCRRLPSGCLIQDMP-NGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQC 228 (229)
T ss_pred CCCCccEEEEecCcEEEEECC-CCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhc
Confidence 889999999999999999974 46899999999997654 68899999999988888776654
No 30
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.44 E-value=2.4e-12 Score=121.66 Aligned_cols=122 Identities=22% Similarity=0.255 Sum_probs=96.2
Q ss_pred ccchhhHHhhcc--eeEEEEEecCCCe----EEEEEeccCC-CCCCceEEEEEE-EEEec-CCEEEEEEEeccCCCCC-C
Q 015638 157 NDYRVRWDKTVV--EHKQLQVDKTNGT----EIGRIIKKFP-LLTPREYVLAWR-LWEGR-DQTFYCFSKECDHPLAP-P 226 (403)
Q Consensus 157 ~e~R~~WD~~v~--e~evLE~~~~~gt----~Ivy~v~k~P-~vS~RDfV~~rr-i~~~~-d~~~~i~~kSVdhp~~P-~ 226 (403)
.++-++|.+.+. ++++|+. .+++. .|+|+..++| ++++||||.... .+..+ .+.+++++.+++|+.+| +
T Consensus 62 ~~~E~~~i~~v~~~~~~~l~~-~~~~~~~~~~v~~~~~~~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~ 140 (208)
T cd08864 62 TEYEKEYVHEIGAYDLEPVEV-DGEGDGVVTYLVQLTYKFPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESL 140 (208)
T ss_pred HhhhhhchhhhccceeEEeee-cCCCccceEEEEEEEEECCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCcc
Confidence 566779999999 8999998 55555 7888888988 699999998866 34333 15788999999999999 8
Q ss_pred CCCcEEEEEeeeEEEEEeeCC----CCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHH
Q 015638 227 QRKYVRVTYFRSGWHIKKVPG----RDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYV 280 (403)
Q Consensus 227 ~kg~VRv~~~~SgwvIrpv~g----~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~l 280 (403)
.+++|||. |.+|..|+..+. .+.++.+|..+.||||+ .||+|+++++++-.=+
T Consensus 141 ~~~~Vr~~-y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~wl~n~~~p~aI~~Dv 199 (208)
T cd08864 141 YENAVLGR-YASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPRWLTKLTIPKAIAKDV 199 (208)
T ss_pred CCCcEEEE-EEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcHHHHhccCchHHHHhH
Confidence 99999999 777755554332 34677777779999999 8999998887775533
No 31
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.17 E-value=6.7e-10 Score=96.29 Aligned_cols=133 Identities=11% Similarity=0.133 Sum_probs=102.7
Q ss_pred EEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEEEEEE
Q 015638 138 SVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCFSK 217 (403)
Q Consensus 138 ~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i~~k 217 (403)
...+| ++|+++|++++.|.+..++|.+.+.+.++++. . ++...+++..++|. ..|+|+.... +.. ++.+ ...
T Consensus 3 ~s~~i-~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~-~-~~~~~~~~~~~~~~-~~~~~~~~~~-~~~-~~~i--~~~ 74 (138)
T cd07813 3 KSRLV-PYSAEQMFDLVADVERYPEFLPWCTASRVLER-D-EDELEAELTVGFGG-IRESFTSRVT-LVP-PESI--EAE 74 (138)
T ss_pred EEEEc-CCCHHHHHHHHHHHHhhhhhcCCccccEEEEc-C-CCEEEEEEEEeecc-ccEEEEEEEE-ecC-CCEE--EEE
Confidence 34556 59999999999999999999999999999997 3 34555666566664 6899986433 222 3433 334
Q ss_pred eccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHHHh
Q 015638 218 ECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRN 289 (403)
Q Consensus 218 SVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al~k 289 (403)
+++. +.....+.|.++|+ ++++|+|+|..+.||+|+ .+|+|.++.+.+...++.+++.|++
T Consensus 75 ~~~g----------~~~~~~g~w~~~p~-~~~~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 75 LVDG----------PFKHLEGEWRFKPL-GENACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred ecCC----------ChhhceeEEEEEEC-CCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4422 23345689999997 556899999999999998 8999999999999999999988874
No 32
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=99.02 E-value=2.3e-08 Score=93.01 Aligned_cols=134 Identities=24% Similarity=0.316 Sum_probs=108.7
Q ss_pred cCCHHHHHHHhcC--ccchhhHHhhcceeEEEEEec---------CCCe-EEEEEeccCC-CCCCceEEEEEEEEEec--
Q 015638 144 NCTPEILRDFYMD--NDYRVRWDKTVVEHKQLQVDK---------TNGT-EIGRIIKKFP-LLTPREYVLAWRLWEGR-- 208 (403)
Q Consensus 144 daspe~V~d~l~D--~e~R~~WD~~v~e~evLE~~~---------~~gt-~Ivy~v~k~P-~vS~RDfV~~rri~~~~-- 208 (403)
+++.+++.+.|.+ .++-+++.+.+...++|+. . .++. .|++...+|| ++++|||+.+.-.....
T Consensus 13 ~~~~~~~~~~L~~~h~e~E~~yi~~i~~~~~l~~-~~~~~~~~~~~~~~~~v~~~~~kfp~pl~~R~F~~Lvit~~~~~~ 91 (184)
T PF11274_consen 13 GASFDEFRKGLKDEHSENEKEYIPGIGSVERLER-WDVDDGGGGWGDGTMEVWQLSYKFPGPLSPRVFVVLVITADLPSK 91 (184)
T ss_pred CCCHHHHHHHHHhhhHHHHHHhccccceEEEEEE-eccccCCcccccceEEEEEEEeECCCCCCCcEEEEEEEEeccCcc
Confidence 6889999998865 6778889999999999998 4 2333 4444446999 69999999887655443
Q ss_pred -------CCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeC------CCCceEEEEEEEecCCCc--hhhHHHhHH
Q 015638 209 -------DQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVP------GRDACEIRIFHQEDAGLN--VGMAKLAFA 273 (403)
Q Consensus 209 -------d~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~------g~~~c~VT~i~q~DpgG~--~~LvN~~v~ 273 (403)
...+++++..|+|+.+|+.+++|||. |.|-=.|+.++ +.+..+-+|.+..||||+ .||.++.++
T Consensus 92 ~~~~~~~~~~f~vVs~P~~~~~~~~~~~~V~g~-Y~SVE~ire~p~~~~~~~~~~veW~MaT~SdaGG~IP~w~q~~~~p 170 (184)
T PF11274_consen 92 TEDDSTGPREFMVVSIPVDHPDSPPRKGYVRGQ-YESVERIRELPDTKDDDEEGPVEWIMATRSDAGGSIPRWMQEMGTP 170 (184)
T ss_pred ccCCCCCCCeEEEEEEEcCCcccCCCCCCEEEE-EEEEEEEEEccCCCCCCCCCcEEEEEEEeeCCCCcccHHHHhccCc
Confidence 36899999999999999999999997 77888888873 446899999999999999 899999777
Q ss_pred hhHHHH
Q 015638 274 KGIWSY 279 (403)
Q Consensus 274 ~gm~~~ 279 (403)
.++.+=
T Consensus 171 ~~Ia~D 176 (184)
T PF11274_consen 171 GAIAKD 176 (184)
T ss_pred HHHHHH
Confidence 666543
No 33
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.00 E-value=3.9e-08 Score=85.21 Aligned_cols=137 Identities=10% Similarity=0.106 Sum_probs=91.8
Q ss_pred EEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCC--CCceEEEEEEEEEecC-CEEE
Q 015638 137 LSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLL--TPREYVLAWRLWEGRD-QTFY 213 (403)
Q Consensus 137 K~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~v--S~RDfV~~rri~~~~d-~~~~ 213 (403)
+++..|+ +||++|++++.|.+..++|.+.+.++++|+. . ++...+++.....++ .-+.-|. .++...++ +..
T Consensus 2 ~~~~~i~-a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~- 76 (144)
T cd08866 2 VARVRVP-APPETVWAVLTDYDNLAEFIPNLAESRLLER-N-GNRVVLEQTGKQGILFFKFEARVV-LELREREEFPRE- 76 (144)
T ss_pred eEEEEEC-CCHHHHHHHHhChhhHHhhCcCceEEEEEEc-C-CCEEEEEEeeeEEEEeeeeeEEEE-EEEEEecCCCce-
Confidence 4566775 9999999999999999999999999999986 3 334445554222210 0011111 11111111 111
Q ss_pred EEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHHH
Q 015638 214 CFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALR 288 (403)
Q Consensus 214 i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al~ 288 (403)
+....++ |.+ ..+.+.|.++|..+.++|+|+|..+.||++. .+++|.++...+...++.|++.+.
T Consensus 77 i~~~~~~--------g~~--~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae 143 (144)
T cd08866 77 LDFEMVE--------GDF--KRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAE 143 (144)
T ss_pred EEEEEcC--------Cch--hceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111 111 3467899999974326899999999999987 899999999999999999998875
No 34
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.79 E-value=3e-07 Score=78.50 Aligned_cols=133 Identities=11% Similarity=0.071 Sum_probs=91.5
Q ss_pred EEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCe-EEEEEeccCCCCCCceEEEEEEEEEecCCEEEE
Q 015638 136 YLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGT-EIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYC 214 (403)
Q Consensus 136 yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt-~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i 214 (403)
+.....| ++||++|++++.|.+..++|.+.+.++++++. .+.+. ...+.....+.+.. +|+.. ..+. ++.. +
T Consensus 4 v~~s~~i-~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~-~~~~--i 76 (140)
T cd07819 4 VSREFEI-EAPPAAVMDVLADVEAYPEWSPKVKSVEVLLR-DNDGRPEMVRIGVGAYGIKD-TYALE-YTWD-GAGS--V 76 (140)
T ss_pred EEEEEEE-eCCHHHHHHHHhChhhhhhhCcceEEEEEecc-CCCCCEEEEEEEEeeeeEEE-EEEEE-EEEc-CCCc--E
Confidence 3445566 59999999999999999999999999999876 33332 23343333343333 55532 1122 2222 2
Q ss_pred EEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHH
Q 015638 215 FSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNA 286 (403)
Q Consensus 215 ~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~a 286 (403)
..+..+.+ +...+.+.|.++|. ++ +|+|+|..+.|++++ .++++.+.......++++|++.
T Consensus 77 ~~~~~~~~---------~~~~~~~~~~~~~~-~~-~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (140)
T cd07819 77 SWTLVEGE---------GNRSQEGSYTLTPK-GD-GTRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKR 139 (140)
T ss_pred EEEEeccc---------ceeEEEEEEEEEEC-CC-CEEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhh
Confidence 22333221 33344578999996 43 799999999999998 8999999999999999888764
No 35
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.67 E-value=1e-06 Score=75.51 Aligned_cols=136 Identities=9% Similarity=-0.039 Sum_probs=90.7
Q ss_pred EEEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecC-CEEE
Q 015638 135 KYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRD-QTFY 213 (403)
Q Consensus 135 ~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d-~~~~ 213 (403)
.++.+..|+ +||++|++++.|.+...+|.+.+.++++++ ++...++...+++++..|.-. ..++.+.+. +.+.
T Consensus 2 ~~~~~~~i~-a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 75 (144)
T cd05018 2 KISGEFRIP-APPEEVWAALNDPEVLARCIPGCESLEKIG----PNEYEATVKLKVGPVKGTFKG-KVELSDLDPPESYT 75 (144)
T ss_pred eeeeEEEec-CCHHHHHHHhcCHHHHHhhccchhhccccC----CCeEEEEEEEEEccEEEEEEE-EEEEEecCCCcEEE
Confidence 356667775 999999999999999999999999877664 233333333344444444332 223333333 3333
Q ss_pred EEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc-----hhhHHHhHHhhHHHHHHHHHHHH
Q 015638 214 CFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN-----VGMAKLAFAKGIWSYVCKMDNAL 287 (403)
Q Consensus 214 i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~-----~~LvN~~v~~gm~~~lkkL~~al 287 (403)
+...+. .+ .+...+...|.|+|. + ++|+|+|..+.+++|. .++++.++.+.+..++++|++.+
T Consensus 76 ~~~~~~-~~--------~~~~~~~~~~~l~~~-~-~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 76 ITGEGK-GG--------AGFVKGTARVTLEPD-G-GGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EEEEEc-CC--------CceEEEEEEEEEEec-C-CcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 322221 11 122245678999996 3 5799999999999987 57888888888888888888765
No 36
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.29 E-value=6.8e-05 Score=63.83 Aligned_cols=124 Identities=15% Similarity=0.145 Sum_probs=87.0
Q ss_pred cCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEEEEEEeccCCC
Q 015638 144 NCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCFSKECDHPL 223 (403)
Q Consensus 144 daspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i~~kSVdhp~ 223 (403)
++|+++|++++.|.+..++|-+.+.++++|+. .+++..+ .+...... ..+.|.. +........ +....+
T Consensus 2 ~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~-~~~~~~~-~~~~~~~~-~~~~~~~-~~~~~~~~~---~~~~~~---- 70 (130)
T PF03364_consen 2 NAPPEEVWSVITDYENYPRFFPPVKEVRVLER-DGDGMRA-RWEVKFGG-IKRSWTS-RVTEDPPER---IRFEQI---- 70 (130)
T ss_dssp SS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEE-ECCEEEE-EEEECTTT-TCEEEEE-EEEEECTTT---EEEESS----
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCceEEEEEe-CCCeEEE-EEEEecCC-EEEEEEE-EEEEEEeee---eeeeec----
Confidence 58999999999999999999999999999998 3332223 33322222 4466653 222333322 222221
Q ss_pred CCCCCCcEEEEEeeeEEEEEeeCC---CCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHH
Q 015638 224 APPQRKYVRVTYFRSGWHIKKVPG---RDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMD 284 (403)
Q Consensus 224 ~P~~kg~VRv~~~~SgwvIrpv~g---~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~ 284 (403)
.|.. ..+.+.|.++|..+ ...|++++.+..+|+++ ..+++.++.+.....+++|+
T Consensus 71 ----~g~~--~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 71 ----SGPF--KSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp ----ETTE--EEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCc--hhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 2222 34678999999865 55899999999999999 89999999998888888875
No 37
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=98.29 E-value=4.5e-05 Score=64.55 Aligned_cols=134 Identities=11% Similarity=0.019 Sum_probs=87.4
Q ss_pred EEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCC-EEEE
Q 015638 136 YLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQ-TFYC 214 (403)
Q Consensus 136 yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~-~~~i 214 (403)
++...+|+ +|+++|++++.|.+...+|.+.+.+.++++.....|+..... .... +.+. .++...+.. ..+
T Consensus 3 i~~~~~i~-a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~-~~~g----~~~~--~~i~~~~~~~~~i- 73 (140)
T cd07821 3 VTVSVTID-APADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVT-LKDG----GTVR--ERLLALDDAERRY- 73 (140)
T ss_pred EEEEEEEC-CCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEE-eCCC----CEEE--EEehhcCccCCEE-
Confidence 45666775 999999999999999999999999888876411123332211 1111 2222 223222222 222
Q ss_pred EEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHH
Q 015638 215 FSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNAL 287 (403)
Q Consensus 215 ~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al 287 (403)
..+...- .. +...+.+.|.++|. ++++|+|++.++.+++|. .++++.++..++-..|++|++.|
T Consensus 74 ~~~~~~~-~~-------~~~~~~~~~~~~~~-~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 74 SYRIVEG-PL-------PVKNYVATIRVTPE-GDGGTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred EEEecCC-CC-------CcccceEEEEEEEC-CCCccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222211 01 12234678999996 555899999999999985 78889999999999999998765
No 38
>PRK10724 hypothetical protein; Provisional
Probab=98.18 E-value=8.8e-05 Score=67.40 Aligned_cols=136 Identities=10% Similarity=0.102 Sum_probs=91.1
Q ss_pred EEEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEEE
Q 015638 135 KYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYC 214 (403)
Q Consensus 135 ~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i 214 (403)
.++.+.+++ +|++++++++.|.+..++|-+.+.+.+++++ .+++ .+......+..+ ...|+... .+ ..++. |
T Consensus 16 ~i~~~~~v~-~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~-~~~~-~~a~l~v~~~g~-~~~f~srv-~~-~~~~~--I 87 (158)
T PRK10724 16 QISRTALVP-YSAEQMYQLVNDVQSYPQFLPGCTGSRVLES-TPGQ-MTAAVDVSKAGI-SKTFTTRN-QL-TSNQS--I 87 (158)
T ss_pred eEEEEEEec-CCHHHHHHHHHHHHHHHHhCcccCeEEEEEe-cCCE-EEEEEEEeeCCc-cEEEEEEE-Ee-cCCCE--E
Confidence 466666775 9999999999999999999999999999998 3333 233323344432 44555322 22 22333 2
Q ss_pred EEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHHHh
Q 015638 215 FSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALRN 289 (403)
Q Consensus 215 ~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al~k 289 (403)
....++. | .+ ...+.|.++|.+ +++|+|++.+..+++-+ ..+++.+.....-..++..++.+++
T Consensus 88 ~~~~~~G---p-----F~--~l~g~W~f~p~~-~~~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~~Ra~~ 153 (158)
T PRK10724 88 LMQLVDG---P-----FK--KLIGGWKFTPLS-QEACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAKE 153 (158)
T ss_pred EEEecCC---C-----hh--hccceEEEEECC-CCCEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2244322 2 22 356899999974 45799999999999888 6666666666666666666665554
No 39
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.10 E-value=0.00024 Score=60.54 Aligned_cols=128 Identities=11% Similarity=0.017 Sum_probs=84.0
Q ss_pred EEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEEEEEE
Q 015638 138 SVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCFSK 217 (403)
Q Consensus 138 ~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i~~k 217 (403)
....| ++|+++|++++.|.+..++|.+.+.+++++.. .+.. +..+.|....++|+.. +.+.+.+.. +...
T Consensus 4 ~~i~I-~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~---~~~~---~~~~~~~g~~~~~~~~--v~~~~~~~~-i~~~ 73 (139)
T cd07817 4 KSITV-NVPVEEVYDFWRDFENLPRFMSHVESVEQLDD---TRSH---WKAKGPAGLSVEWDAE--ITEQVPNER-IAWR 73 (139)
T ss_pred EEEEe-CCCHHHHHHHHhChhhhHHHhhhhcEEEEcCC---CceE---EEEecCCCCcEEEEEE--EeccCCCCE-EEEE
Confidence 44566 59999999999999999999999998887643 2222 2224454566777643 333333333 3333
Q ss_pred eccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc--h----hhHHHhHHhhHHHHHHHHHHHH
Q 015638 218 ECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--V----GMAKLAFAKGIWSYVCKMDNAL 287 (403)
Q Consensus 218 SVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~--~----~LvN~~v~~gm~~~lkkL~~al 287 (403)
....+. ...+-|.++|. ++++|+|+|..+.++.+. . .+++.++.+.+...|++|++.+
T Consensus 74 ~~~~~~-----------~~~~~~~f~~~-~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~a 137 (139)
T cd07817 74 SVEGAD-----------PNAGSVRFRPA-PGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLV 137 (139)
T ss_pred ECCCCC-----------CcceEEEEEEC-CCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 332211 13366778986 446899999999998875 2 4566667777777777776654
No 40
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=97.96 E-value=0.00034 Score=60.26 Aligned_cols=131 Identities=15% Similarity=0.230 Sum_probs=79.0
Q ss_pred EEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEE-EeccCCCCCCceEEEEEEEEEecCCEEEEEEEe
Q 015638 140 TVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGR-IIKKFPLLTPREYVLAWRLWEGRDQTFYCFSKE 218 (403)
Q Consensus 140 tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy-~v~k~P~vS~RDfV~~rri~~~~d~~~~i~~kS 218 (403)
.+| ++|+++|++++.|.+..++|.+. ...++++. . ++...++ +.....- ....|... .....++..+. ...
T Consensus 5 ~~i-~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~-~-~~~~~~~~~~~~~~g-~~~~~~~~-~~~~~~~~~i~--~~~ 76 (142)
T cd08861 5 VTV-AAPAEDVYDLLADAERWPEFLPT-VHVERLEL-D-GGVERLRMWATAFDG-SVHTWTSR-RVLDPEGRRIV--FRQ 76 (142)
T ss_pred EEE-cCCHHHHHHHHHhHHhhhccCCC-ceEEEEEE-c-CCEEEEEEEEEcCCC-cEEEEEEE-EEEcCCCCEEE--EEE
Confidence 456 59999999999999999999999 88888876 2 3343344 2222111 11222111 11122122322 222
Q ss_pred ccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc----hhhHHHhHHhhHHHHHHHHHHHH
Q 015638 219 CDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN----VGMAKLAFAKGIWSYVCKMDNAL 287 (403)
Q Consensus 219 Vdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~----~~LvN~~v~~gm~~~lkkL~~al 287 (403)
+.- ++ +...+.+.|.++|. ++++|+|+|....+++++ ..++..++.+.+...|+.|++.+
T Consensus 77 ~~~------~~--~~~~~~g~w~~~~~-~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 140 (142)
T cd08861 77 EEP------PP--PVASMSGEWRFEPL-GGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAA 140 (142)
T ss_pred eeC------CC--ChhhheeEEEEEEC-CCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHh
Confidence 211 11 12245678999996 445899999999999986 34555556666666666666554
No 41
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.89 E-value=0.00064 Score=59.66 Aligned_cols=131 Identities=11% Similarity=0.100 Sum_probs=77.0
Q ss_pred EEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEE--ecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEE
Q 015638 136 YLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQV--DKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFY 213 (403)
Q Consensus 136 yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~--~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~ 213 (403)
|-....|. +|+++|++++.|.+..++|.+.+.+.++++. +...+....+..... .+.++.+..++.+.+.+..+
T Consensus 3 ~~~~~~i~-ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~v~~~~p~~~~ 78 (146)
T cd07824 3 FHTVWRIP-APPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGL---LPYRLRFELRVTRIEPLSLL 78 (146)
T ss_pred ceEEEEec-CCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEec---CCcEEEEEEEEEeecCCcEE
Confidence 34455675 9999999999999999999999999999873 112222222211111 22233333333343333344
Q ss_pred EEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc---------hhhHHHhHHhhHHHHHHHHH
Q 015638 214 CFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN---------VGMAKLAFAKGIWSYVCKMD 284 (403)
Q Consensus 214 i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~---------~~LvN~~v~~gm~~~lkkL~ 284 (403)
... . ..+ .++ ...|.|+|. + ++|+|++....+.+|+ ..+++.+..+.+...+++|+
T Consensus 79 ~~~-~-~g~--------~~~---~~~~~~~~~-~-~gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~ 143 (146)
T cd07824 79 EVR-A-SGD--------LEG---VGRWTLAPD-G-SGTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLA 143 (146)
T ss_pred EEE-E-EEe--------eeE---EEEEEEEEc-C-CCEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHH
Confidence 332 1 111 122 356899984 3 3799999999999873 34445555555555555554
Q ss_pred H
Q 015638 285 N 285 (403)
Q Consensus 285 ~ 285 (403)
+
T Consensus 144 ~ 144 (146)
T cd07824 144 R 144 (146)
T ss_pred h
Confidence 3
No 42
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=97.80 E-value=0.002 Score=57.51 Aligned_cols=132 Identities=11% Similarity=0.074 Sum_probs=83.3
Q ss_pred EEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccC--CCCCCceEEEEEEEEEecCCEEEEEEE
Q 015638 140 TVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKF--PLLTPREYVLAWRLWEGRDQTFYCFSK 217 (403)
Q Consensus 140 tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~--P~vS~RDfV~~rri~~~~d~~~~i~~k 217 (403)
.+| ++||++|++++.|.+..++|.+.+.+.++++. +++.......... +.+ ...|+. ++. .+.....+...
T Consensus 7 i~i-~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~--~~~~~~~r~~i~~~~~g~-~~~w~s-~~~--~~~~~~~i~~~ 79 (146)
T cd08860 7 IVI-DAPLDLVWDMTNDIATWPDLFSEYAEAEVLEE--DGDTVRFRLTMHPDANGT-VWSWVS-ERT--LDPVNRTVRAR 79 (146)
T ss_pred EEE-cCCHHHHHHHHHhhhhhhhhccceEEEEEEEe--cCCeEEEEEEEEeccCCE-EEEEEE-EEE--ecCCCcEEEEE
Confidence 455 59999999999999999999999999999997 2332222222222 211 222321 111 12222323333
Q ss_pred eccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCC--c--hhhHHHhHHhhHHHHHHHHHHHHHh
Q 015638 218 ECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGL--N--VGMAKLAFAKGIWSYVCKMDNALRN 289 (403)
Q Consensus 218 SVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG--~--~~LvN~~v~~gm~~~lkkL~~al~k 289 (403)
. .+..| .+ ...+.|.++|+++ +|+|+|.+.....+ + ..++..++.+.....+.+|++.+.+
T Consensus 80 ~--~~~~p-----~~--~m~~~W~f~~~~~--gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~ 144 (146)
T cd08860 80 R--VETGP-----FA--YMNIRWEYTEVPE--GTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEA 144 (146)
T ss_pred E--ecCCC-----cc--eeeeeEEEEECCC--CEEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhh
Confidence 2 22222 22 2346899999743 49999999888663 2 4467777888888889888877654
No 43
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.62 E-value=0.0046 Score=52.03 Aligned_cols=130 Identities=18% Similarity=0.219 Sum_probs=77.5
Q ss_pred EEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEe-cCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEEEEEE
Q 015638 139 VTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVD-KTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCFSK 217 (403)
Q Consensus 139 ~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~-~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i~~k 217 (403)
...|+ +|+++|++++.|.+...+|++.+..++.+... ...|..+.... .++. ..+-...++.+.+.+..+.. .
T Consensus 4 ~~~i~-ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~-~~~g---~~~~~~~~v~~~~p~~~~~~-~ 77 (140)
T cd08865 4 SIVIE-RPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVR-KFLG---RRIELTYEITEYEPGRRVVF-R 77 (140)
T ss_pred EEEEc-CCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEE-EecC---ceEEEEEEEEEecCCcEEEE-E
Confidence 34565 99999999999999999999999888877541 11233433322 2221 11111122333333333322 2
Q ss_pred eccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc----hhhHHHhHHhhHHHHHHHHHHHH
Q 015638 218 ECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN----VGMAKLAFAKGIWSYVCKMDNAL 287 (403)
Q Consensus 218 SVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~----~~LvN~~v~~gm~~~lkkL~~al 287 (403)
... +.++ +..-|.++|. ++ +|++++....++++. ..++...+...+-.++++|++.+
T Consensus 78 ~~~--------~~~~---~~~~~~~~~~-~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 138 (140)
T cd08865 78 GSS--------GPFP---YEDTYTFEPV-GG-GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALL 138 (140)
T ss_pred ecC--------CCcc---eEEEEEEEEc-CC-ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 211 1122 3467999986 33 799999999999776 34555556666666666666554
No 44
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=97.56 E-value=0.014 Score=49.25 Aligned_cols=129 Identities=13% Similarity=0.093 Sum_probs=76.8
Q ss_pred EEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecC-CEEEE
Q 015638 136 YLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRD-QTFYC 214 (403)
Q Consensus 136 yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d-~~~~i 214 (403)
+..+..|+ +||++|++++.|.+...+|.+.+..++.++. ++..+...+..... ..+. .++...++ +..+.
T Consensus 4 ~~~~~~v~-a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~---~~~~~~~~~~~~g~---~~~~--~~i~~~~~~~~~~~ 74 (139)
T PF10604_consen 4 VEVSIEVP-APPEAVWDLLSDPENWPRWWPGVKSVELLSG---GGPGTERTVRVAGR---GTVR--EEITEYDPEPRRIT 74 (139)
T ss_dssp EEEEEEES-S-HHHHHHHHTTTTGGGGTSTTEEEEEEEEE---CSTEEEEEEEECSC---SEEE--EEEEEEETTTTEEE
T ss_pred EEEEEEEC-CCHHHHHHHHhChhhhhhhhhceEEEEEccc---cccceeEEEEeccc---ccee--EEEEEecCCCcEEE
Confidence 34556675 9999999999999999999999999988773 22322222221111 2222 22333222 43443
Q ss_pred EEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc-h----hhHHHhHHhhHHHHHHHHHHHH
Q 015638 215 FSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN-V----GMAKLAFAKGIWSYVCKMDNAL 287 (403)
Q Consensus 215 ~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~-~----~LvN~~v~~gm~~~lkkL~~al 287 (403)
..- + ..+... +...|.++|. + ++|+|++..+.++ +. . -++...+...+-..+++|++.+
T Consensus 75 ~~~-~-------~~~~~~---~~~~~~~~~~-~-~gt~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 138 (139)
T PF10604_consen 75 WRF-V-------PSGFTN---GTGRWRFEPV-G-DGTRVTWTVEFEP-GLPGWLAGPLLRPAVKRIVREALENLKRAA 138 (139)
T ss_dssp EEE-E-------SSSSCE---EEEEEEEEEE-T-TTEEEEEEEEEEE-SCTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEE-E-------ecceeE---EEEEEEEEEc-C-CCEEEEEEEEEEE-eccchhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 322 2 122222 3467999996 4 3599999999997 33 3 3455555666666666666554
No 45
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.48 E-value=0.0069 Score=49.30 Aligned_cols=131 Identities=10% Similarity=0.013 Sum_probs=75.4
Q ss_pred EEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCE-EEEEE
Q 015638 138 SVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQT-FYCFS 216 (403)
Q Consensus 138 ~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~-~~i~~ 216 (403)
....|+ +|+++|++++.|.+...+|.+.+.++++++. . .......+...+......++. .++...+.+. +....
T Consensus 3 ~~~~i~-a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~ 77 (141)
T cd07812 3 ASIEIP-APPEAVWDLLSDPERWPEWSPGLERVEVLGG-G-EGGVGARFVGGRKGGRRLTLT--SEVTEVDPPRPGRFRV 77 (141)
T ss_pred EEEEeC-CCHHHHHHHHhChhhhhhhCcccceEEEcCC-C-CccceeEEEEEecCCccccce--EEEEEecCCCceEEEE
Confidence 445665 9999999999999999999999999988774 2 111111111111111111222 2222222111 11111
Q ss_pred EeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc-----hhhHHHhHHhhHHHHHHHHHH
Q 015638 217 KECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN-----VGMAKLAFAKGIWSYVCKMDN 285 (403)
Q Consensus 217 kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~-----~~LvN~~v~~gm~~~lkkL~~ 285 (403)
.+.+++ ......|.+.+. ++++|++++.+..++.++ ..+++..+...+..++.+++.
T Consensus 78 ~~~~~~-----------~~~~~~~~~~~~-~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T cd07812 78 TGGGGG-----------VDGTGEWRLEPE-GDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKA 139 (141)
T ss_pred ecCCCC-----------cceeEEEEEEEC-CCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence 221111 245678999996 334899999999999886 355555555555555555543
No 46
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.38 E-value=0.015 Score=49.06 Aligned_cols=135 Identities=11% Similarity=0.056 Sum_probs=74.4
Q ss_pred EEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEEEEE
Q 015638 137 LSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCFS 216 (403)
Q Consensus 137 K~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i~~ 216 (403)
....+|+ +|+++|++++.|.+..++|.+.+.+.+... ...|..+.+.....+ .+.+.....+.+.+.+..+...
T Consensus 3 ~~~~~i~-ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~--~~~G~~~~~~~~~~~---~~~~~~~~~v~~~~p~~~~~~~ 76 (141)
T cd07822 3 STEIEIN-APPEKVWEVLTDFPSYPEWNPFVRSATGLS--LALGARLRFVVKLPG---GPPRSFKPRVTEVEPPRRLAWR 76 (141)
T ss_pred EEEEEec-CCHHHHHHHHhccccccccChhheeEeccc--cCCCCEEEEEEeCCC---CCcEEEEEEEEEEcCCCEeEEE
Confidence 3455675 999999999999999999998776654432 345666665443222 1223333344444433333322
Q ss_pred EeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc-hhhHHHhHHhhHHHHHHHHHHHHHh
Q 015638 217 KECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN-VGMAKLAFAKGIWSYVCKMDNALRN 289 (403)
Q Consensus 217 kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~-~~LvN~~v~~gm~~~lkkL~~al~k 289 (403)
.... + .... .....|.++|. ++++|++++.. +..|. ..++-..+...+-.-++++...|+.
T Consensus 77 -~~~~---~--~~~~---~~~~~~~~~~~-~~~~T~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~ 138 (141)
T cd07822 77 -GGLP---F--PGLL---DGEHSFELEPL-GDGGTRFVHRE--TFSGLLAPLVLLGLGRDLRAGFEAMNEALKA 138 (141)
T ss_pred -ecCC---C--CcEe---eEEEEEEEEEc-CCCcEEEEEee--EEEEEEhHHhhhhhHHHHhHhHHHHHHHHHH
Confidence 2211 1 1111 23357889995 34589998864 33454 4444444444444444444444443
No 47
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=97.33 E-value=0.018 Score=48.76 Aligned_cols=128 Identities=9% Similarity=0.025 Sum_probs=76.7
Q ss_pred EEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEec-CCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEEE
Q 015638 136 YLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDK-TNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYC 214 (403)
Q Consensus 136 yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~-~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i 214 (403)
+.....|+ +|++.|++++.|.+..++|.+.+.+++.+.. . ..|...... .+. ...+. ..+.+.+.+..+.
T Consensus 3 ~~~~~~i~-Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~-~~~~G~~~~~~---~~~--~~~~~--~~i~~~~p~~~~~ 73 (138)
T cd08862 3 FEATIVID-APPERVWAVLTDVENWPAWTPSVETVRLEGP-PPAVGSSFKMK---PPG--LVRST--FTVTELRPGHSFT 73 (138)
T ss_pred EEEEEEEc-CCHHHHHHHHHhhhhcccccCcceEEEEecC-CCCCCcEEEEe---cCC--CCceE--EEEEEecCCCEEE
Confidence 34455674 9999999999999999999999988888764 3 234433221 121 11122 1233333232222
Q ss_pred EEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc-h----hhHHHhHHhhHHHHHHHHHHHH
Q 015638 215 FSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN-V----GMAKLAFAKGIWSYVCKMDNAL 287 (403)
Q Consensus 215 ~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~-~----~LvN~~v~~gm~~~lkkL~~al 287 (403)
..+.. + .. .....|.|+|. ++++|++++... ..|. . .++...+..++...|++|++.+
T Consensus 74 -~~~~~----~----~~---~~~~~~~~~~~-~~~~t~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 136 (138)
T cd08862 74 -WTGPA----P----GI---SAVHRHEFEAK-PDGGVRVTTSES--LSGPLAFLFGLFVGKKLRALLPEWLEGLKAAA 136 (138)
T ss_pred -EEecC----C----CE---EEEEEEEEEEc-CCCcEEEEEEEE--eecchHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 22211 1 12 23468999986 445899997764 4444 2 4566666777777777777654
No 48
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.22 E-value=0.015 Score=50.86 Aligned_cols=134 Identities=8% Similarity=0.006 Sum_probs=77.7
Q ss_pred EEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEec-CC-EEEEEE
Q 015638 139 VTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGR-DQ-TFYCFS 216 (403)
Q Consensus 139 ~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~-d~-~~~i~~ 216 (403)
+..+ ++||+.+++++.|++....|.+.+...+.+. ++........++.+++ ..|....++.+.+ .+ .+.+..
T Consensus 4 ~~~v-~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 77 (146)
T cd07823 4 EFTV-PAPPDRVWALLLDIERVAPCLPGASLTEVEG----DDEYKGTVKVKLGPIS-ASFKGTARLLEDDEAARRAVLEA 77 (146)
T ss_pred eEEe-cCCHHHHHHHhcCHHHHHhcCCCceeccccC----CCeEEEEEEEEEccEE-EEEEEEEEEEeccCCCcEEEEEE
Confidence 3455 5999999999999999999988766655532 2332222223444332 2332222222222 22 232222
Q ss_pred EeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc-----hhhHHHhHHhhHHHHHHHHHHHH
Q 015638 217 KECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN-----VGMAKLAFAKGIWSYVCKMDNAL 287 (403)
Q Consensus 217 kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~-----~~LvN~~v~~gm~~~lkkL~~al 287 (403)
.+-+ +...+.+++. ..|.+.| ++++|+|+|....+++|+ ..+++....+.+-.|+++|++.+
T Consensus 78 ~g~~----~~~~g~~~~~---~~~~l~~--~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~ 144 (146)
T cd07823 78 TGKD----ARGQGTAEAT---VTLRLSP--AGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARL 144 (146)
T ss_pred EEec----CCCcceEEEE---EEEEEEe--cCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence 2210 0112334433 3577887 335899999999999998 34566666666777777776654
No 49
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.02 E-value=0.057 Score=46.89 Aligned_cols=135 Identities=10% Similarity=0.025 Sum_probs=76.5
Q ss_pred EEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEe-----cCCCeEEEEEeccCCCCCCceEEEEEEEEEecCC
Q 015638 136 YLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVD-----KTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQ 210 (403)
Q Consensus 136 yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~-----~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~ 210 (403)
+.....| ++|+++|++++.|.+..++|++.+...+.++.. ...|..+.+. .+.+ .....+ .+...+.+
T Consensus 4 ~~~s~~I-~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~~-~~~~~~----~v~~~~p~ 76 (150)
T cd07818 4 VERSIVI-NAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWE-GNDK-VGEGEM----EITESVPN 76 (150)
T ss_pred EEEEEEE-eCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEe-cCCc-ccceEE----EEEecCCC
Confidence 3445566 599999999999999999999988776555431 1234443332 1111 111111 11122212
Q ss_pred EEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc------hhhHHHhHHhhHHHHHHHHH
Q 015638 211 TFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN------VGMAKLAFAKGIWSYVCKMD 284 (403)
Q Consensus 211 ~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~------~~LvN~~v~~gm~~~lkkL~ 284 (403)
..+ ...... .-|.. ......|.++|. + ++|+|++....++.+. ..++...+.+.+...+++|+
T Consensus 77 ~~i-~~~~~~--~~~~~------~~~~~~~~~~~~-~-~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk 145 (150)
T cd07818 77 ERI-EYELRF--IKPFE------ATNDVEFTLEPV-G-GGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLK 145 (150)
T ss_pred cEE-EEEEEe--cCCcc------ccceEEEEEEEc-C-CceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 222 112111 01111 123478999996 4 3799999999988764 24556666666666677776
Q ss_pred HHHH
Q 015638 285 NALR 288 (403)
Q Consensus 285 ~al~ 288 (403)
+.+.
T Consensus 146 ~~~E 149 (150)
T cd07818 146 AVLE 149 (150)
T ss_pred HHhh
Confidence 6554
No 50
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.68 E-value=0.073 Score=45.77 Aligned_cols=136 Identities=7% Similarity=-0.006 Sum_probs=73.4
Q ss_pred EEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEE--EEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEEE
Q 015638 137 LSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQL--QVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYC 214 (403)
Q Consensus 137 K~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evL--E~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i 214 (403)
....+| ++||+.|++++.|.+..++|++......+. +.+...|....+....... .-++. -++.+.+.+..++
T Consensus 3 ~~~~~i-~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~--~~~~~--~~v~~~~p~~~l~ 77 (144)
T cd07825 3 SVSRTV-DAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLDGG--PYRIT--NHVVAFEENRLIA 77 (144)
T ss_pred EEEEEE-eCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcCCC--ceEEE--EEEEEECCCCEEE
Confidence 344566 499999999999999999999742211111 1113345555544332111 11222 1233333344444
Q ss_pred EEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc-hhhHH--HhHHhhHHHHHHHHHHHH
Q 015638 215 FSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN-VGMAK--LAFAKGIWSYVCKMDNAL 287 (403)
Q Consensus 215 ~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~-~~LvN--~~v~~gm~~~lkkL~~al 287 (403)
..... +..+... ....|.++|+ ++++|+|++...-+..+. .-+.+ .....++-..|++|++.+
T Consensus 78 ~~~~~--~~~~~~~-------~~~~~~l~~~-~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 78 WRPGP--AGQEPGG-------HRWRWELEPI-GPGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EEccC--CCCCCCc-------eeEEEEEEEC-CCCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 43221 1111111 2235789986 446899998765333332 22222 346788888998888765
No 51
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=96.56 E-value=0.021 Score=51.38 Aligned_cols=134 Identities=13% Similarity=0.149 Sum_probs=79.6
Q ss_pred EEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEEEE
Q 015638 136 YLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCF 215 (403)
Q Consensus 136 yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i~ 215 (403)
|.....++ .+|++++++..|.+.+++.-+.+...++++++ +...+--....+. .=|+.-..+-+...+++ .|.
T Consensus 4 ~~~s~lv~-y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~--~~~l~A~l~V~~k--~i~e~F~Trv~~~~~~~--~I~ 76 (146)
T COG2867 4 IERTALVP-YSASQMFDLVNDVESYPEFLPWCSASRVLERN--ERELIAELDVGFK--GIRETFTTRVTLKPTAR--SID 76 (146)
T ss_pred eEeeeecc-CCHHHHHHHHHHHHhCchhccccccceEeccC--cceeEEEEEEEhh--heeeeeeeeeeecCchh--hhh
Confidence 44445565 99999999999999999999999999999983 2221111111111 11222222211111111 222
Q ss_pred EEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCchhhHHHhHHhhHHHHHHHHHHHHHh
Q 015638 216 SKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLNVGMAKLAFAKGIWSYVCKMDNALRN 289 (403)
Q Consensus 216 ~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~~~LvN~~v~~gm~~~lkkL~~al~k 289 (403)
.+.+ .|.-| ...++|.|.|+ ++++|+|.+...-+++.. |+++++....-..-.+|.++..+
T Consensus 77 ~~l~--------~GPFk--~L~~~W~F~pl-~~~~ckV~f~ldfeF~s~--ll~~~~g~~f~~~a~~mv~aF~k 137 (146)
T COG2867 77 MKLI--------DGPFK--YLKGGWQFTPL-SEDACKVEFFLDFEFKSR--LLGALIGPVFKRLASKMVEAFEK 137 (146)
T ss_pred hhhh--------cCChh--hhcCceEEEEC-CCCceEEEEEEEeeehhH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 22222 25689999997 667999999988888876 55555544444444555555444
No 52
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=96.45 E-value=0.55 Score=41.24 Aligned_cols=131 Identities=8% Similarity=-0.002 Sum_probs=74.2
Q ss_pred EEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEe-cCCEEEEEEEe
Q 015638 140 TVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEG-RDQTFYCFSKE 218 (403)
Q Consensus 140 tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~-~d~~~~i~~kS 218 (403)
..++ +|+++++++|.|++. |-.-+-.++.+|. .+ +..-.....++.+++.+=-..+ ++.+. +++.+.+..++
T Consensus 3 ~~v~-a~~~~vw~~l~D~~~---l~~ciPG~~~~e~-~~-~~~~~~~~v~vG~i~~~~~g~~-~~~~~~~~~~~~~~~~g 75 (140)
T PF06240_consen 3 FEVP-APPEKVWAFLSDPEN---LARCIPGVESIEK-VG-DEYKGKVKVKVGPIKGTFDGEV-RITEIDPPESYTLEFEG 75 (140)
T ss_dssp EEEC-S-HHHHHHHHT-HHH---HHHHSTTEEEEEE-EC-TEEEEEEEEESCCCEEEEEEEE-EEEEEETTTEEEEEEEE
T ss_pred EEec-CCHHHHHHHhcCHHH---HHhhCCCcEEeee-cC-cEEEEEEEEEeccEEEEEEEEE-EEEEcCCCcceEeeeec
Confidence 4565 999999999999874 5555555666665 44 3222222246666554433322 33333 33444344444
Q ss_pred ccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc-----hhhHHHhHHhhHHHHHHHHHHHH
Q 015638 219 CDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN-----VGMAKLAFAKGIWSYVCKMDNAL 287 (403)
Q Consensus 219 Vdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~-----~~LvN~~v~~gm~~~lkkL~~al 287 (403)
-.. .+-..+... ..+...++.+ |+|+|-...+.+|. ..+++.++.+.+-.|+++|++.+
T Consensus 76 ~g~------~~~~~~~~~---~~~~~~~~~~-T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l 139 (140)
T PF06240_consen 76 RGR------GGGSSASAN---ITLSLEDDGG-TRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL 139 (140)
T ss_dssp EEC------TCCEEEEEE---EEEEECCCTC-EEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCC------ccceEEEEE---EEEEcCCCCC-cEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 332 223344322 2234333444 99999999999998 45666666677777777776654
No 53
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=96.29 E-value=0.43 Score=40.22 Aligned_cols=134 Identities=10% Similarity=0.074 Sum_probs=72.9
Q ss_pred EEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEEEEEE
Q 015638 138 SVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCFSK 217 (403)
Q Consensus 138 ~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i~~k 217 (403)
...+|+ +|+++|++++.|.+..++|.+.+...+. +. ...+.......... +..+-...++.+.+.+..+....
T Consensus 4 ~s~~I~-a~~~~Vw~~l~d~~~~~~w~~~~~~~~~-~~-~~Gg~~~~~~~~~~----g~~~~~~~~i~~~~~~~~i~~~~ 76 (139)
T cd07814 4 IEREFD-APPELVWRALTDPELLAQWFGPTTTAEM-DL-RVGGRWFFFMTGPD----GEEGWVSGEVLEVEPPRRLVFTW 76 (139)
T ss_pred EEEEec-CCHHHHHHHcCCHHHHHhhhCcCCceEE-cc-cCCceEEEEEECCC----CCEEeccEEEEEEcCCCeEEEEe
Confidence 345675 9999999999999999999986222222 22 22233322221111 11222222333333333332221
Q ss_pred eccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc-hhhHHHhHHhhHHHHHHHHHHHHH
Q 015638 218 ECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN-VGMAKLAFAKGIWSYVCKMDNALR 288 (403)
Q Consensus 218 SVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~-~~LvN~~v~~gm~~~lkkL~~al~ 288 (403)
.. .+. | +... ...-|.|+|. + ++|+|++.+..-+.+. .......+..++..++.+|++.|.
T Consensus 77 ~~-~~~-~---~~~~---~~~~~~~~~~-~-~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 138 (139)
T cd07814 77 AF-SDE-T---PGPE---TTVTVTLEET-G-GGTRLTLTHSGFPEEDAEQEAREGMEEGWTGTLDRLKALLE 138 (139)
T ss_pred cc-cCC-C---CCCc---eEEEEEEEEC-C-CCEEEEEEEEccChHhHHHHHHhCHhhHHHHHHHHHHHHhh
Confidence 11 111 1 1122 3456889996 4 5799999887666543 334455566677778888877664
No 54
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=96.01 E-value=0.33 Score=45.47 Aligned_cols=141 Identities=13% Similarity=0.097 Sum_probs=90.6
Q ss_pred CCeEEEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCE
Q 015638 132 GPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQT 211 (403)
Q Consensus 132 G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~ 211 (403)
++.+.....+| |.|+++|+++..|.|..+.|.+.+...+++++. . .+|+.+.|+-. +|---.++.....+.
T Consensus 68 ~~i~v~~~V~I-~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddk--r----SrW~~~ap~g~--~v~Wea~it~d~~~e 138 (217)
T COG5637 68 KPIEVEVQVTI-DKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDK--R----SRWKANAPLGL--EVEWEAEITKDIPGE 138 (217)
T ss_pred CceEEEEEEEe-CChHHHHHHHHHhhhhhhHHHHhhceeeccCCC--c----cceeEcCCCCc--eEEEeehhhccCCCc
Confidence 34455555566 599999999999999999999999999999752 1 67887776411 111111222222333
Q ss_pred EEEEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEE-EEEecCCCc-hhhHHHhHHhhHHHHHHHHHHHHHh
Q 015638 212 FYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRI-FHQEDAGLN-VGMAKLAFAKGIWSYVCKMDNALRN 289 (403)
Q Consensus 212 ~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~-i~q~DpgG~-~~LvN~~v~~gm~~~lkkL~~al~k 289 (403)
.|--.|++-..+| +.|.|| |++.+|+. |+|.+ +.+.-|||. .-+++.++...+-..++.=-...+.
T Consensus 139 -~I~W~Sl~Ga~v~-NsG~Vr---------F~~~pg~~-t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~RFk~ 206 (217)
T COG5637 139 -RIQWESLPGARVE-NSGAVR---------FYDAPGDS-TEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLERFKE 206 (217)
T ss_pred -EEeeecCCCCcCC-CCccEE---------eeeCCCCc-eEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 4566787654443 667777 44555653 44443 345566777 7788888887777766655556666
Q ss_pred hhhh
Q 015638 290 YAVV 293 (403)
Q Consensus 290 Y~~~ 293 (403)
|++.
T Consensus 207 ~~e~ 210 (217)
T COG5637 207 YQEN 210 (217)
T ss_pred HHHc
Confidence 6665
No 55
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.98 E-value=0.53 Score=40.65 Aligned_cols=107 Identities=15% Similarity=0.109 Sum_probs=63.7
Q ss_pred EEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEe---cCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEEEE
Q 015638 139 VTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVD---KTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCF 215 (403)
Q Consensus 139 ~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~---~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i~ 215 (403)
...| ++|+++|++++.|.+..++|.+.+.++++++.. ...|..+.+....++. . +....++.+.+.+..+ .
T Consensus 4 s~~I-~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~-~---~~w~~~it~~~p~~~f-~ 77 (137)
T cd07820 4 STVI-PAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGI-P---QRWTTEITEVEPPRRF-V 77 (137)
T ss_pred EEEc-CCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCC-c---eEEEEEEEEEcCCCeE-E
Confidence 4456 599999999999999999999999999998641 1112333333222232 1 2222233344434333 3
Q ss_pred EEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCC
Q 015638 216 SKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGL 263 (403)
Q Consensus 216 ~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG 263 (403)
..++. |.++ ....-+.++|. ++ +|+|++....++.+
T Consensus 78 ~~~~~--------G~~~--~w~h~~~f~~~-~~-gT~vt~~v~~~~p~ 113 (137)
T cd07820 78 DEQVS--------GPFR--SWRHTHRFEAI-GG-GTLMTDRVEYRLPL 113 (137)
T ss_pred EEecc--------CCch--hCEEEEEEEEC-CC-ceEEEEEEEEeCCc
Confidence 33431 1122 12235678885 33 79999998888754
No 56
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=95.12 E-value=1.6 Score=36.18 Aligned_cols=123 Identities=12% Similarity=0.142 Sum_probs=68.8
Q ss_pred cCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEEEEEEeccCCC
Q 015638 144 NCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCFSKECDHPL 223 (403)
Q Consensus 144 daspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i~~kSVdhp~ 223 (403)
|+|+++|++++.|.+...+| -.....+.+...|..+.+ .. + ...++....++.....+..+...-..+ .
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W----~~~~~~~~~~~~Gg~~~~--~~-~--~g~~~~~~~~v~~~~p~~~i~~~~~~~--~ 69 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQW----FTTSEAEMDFRPGGSFRF--MD-P--DGGEFGFDGTVLEVEPPERIVFTWRMP--D 69 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHH----SEEEEEEEECSTTEEEEE--EE-T--TSEEEEEEEEEEEEETTTEEEEEEEEE--T
T ss_pred CcCHHHHHHHHCCHhHHhhc----cCCCcceeeeecCCEEEE--Ee-c--CCCCceeeEEEEEEeCCEEEEEEEEcc--C
Confidence 58999999999999999999 222333333456777666 22 2 233333332333333334444332221 1
Q ss_pred CCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCchhhHHHhHHhhHHHHHHHHHHHH
Q 015638 224 APPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLNVGMAKLAFAKGIWSYVCKMDNAL 287 (403)
Q Consensus 224 ~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~~~LvN~~v~~gm~~~lkkL~~al 287 (403)
.+. .....-.|.|++. +++|++++.+..-+. .......+..|...++.+|++.|
T Consensus 70 ~~~------~~~~~v~~~~~~~--~~~T~l~~~~~~~~~--~~~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 70 DPD------GPESRVTFEFEEE--GGGTRLTLTHSGFPD--DDEEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp SSS------CEEEEEEEEEEEE--TTEEEEEEEEEEEHS--HHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCC------CCceEEEEEEEEc--CCcEEEEEEEEcCCc--cHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 2233456778883 457999988721111 22222226777888888887765
No 57
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=94.82 E-value=2.3 Score=36.80 Aligned_cols=133 Identities=11% Similarity=0.125 Sum_probs=71.2
Q ss_pred EEEEEeccCCHHHHHHHhcCccchhhHHhh-cceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEEEE
Q 015638 137 LSVTVFENCTPEILRDFYMDNDYRVRWDKT-VVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCF 215 (403)
Q Consensus 137 K~~tv~edaspe~V~d~l~D~e~R~~WD~~-v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i~ 215 (403)
.....|. +|+++|++++.|++...+|-.- --.....+.+...|....|.. ..| ...+|-..-.+.+.+.+..++.
T Consensus 3 ~~~r~i~-ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~~~-~~~--~g~~~~~~g~v~e~~p~~~l~~ 78 (139)
T cd08894 3 VTTRVID-APRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRFVM-HGP--DGTDYPNRIVFLEIEPPERIVY 78 (139)
T ss_pred EEEEEeC-CCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEEEE-ECC--CCCEecceEEEEEEcCCCEEEE
Confidence 3445675 9999999999999999999531 011112222233444433322 112 1233332223333333444444
Q ss_pred EEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHHH
Q 015638 216 SKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALR 288 (403)
Q Consensus 216 ~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al~ 288 (403)
.-..+ + . ....-|.|+|. + ++|++++.+. .+.-. ...+...+..|.-..+.+|++.+.
T Consensus 79 t~~~~----~---~-----~~~v~~~~~~~-~-~gT~ltl~~~-~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 79 DHGSG----P---P-----RFRLTVTFEEQ-G-GKTRLTWRQV-FPTAAERCEKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred EeccC----C---C-----cEEEEEEEEEC-C-CCEEEEEEEE-cCCHHHHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 33221 1 1 12235788885 4 5799998864 22211 233456677888888888877654
No 58
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism]
Probab=94.67 E-value=0.0018 Score=62.90 Aligned_cols=176 Identities=10% Similarity=-0.109 Sum_probs=107.9
Q ss_pred ceEEEecCCcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEec
Q 015638 109 WENVIDKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIK 188 (403)
Q Consensus 109 Welv~dk~gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~ 188 (403)
|...+....++++..+ ....+...++....+. -.......++.-...+..|+....-...++. +..++.+.....
T Consensus 27 ~s~~k~~~~v~~~~~a---~~~~~~~i~~v~~~~~-lf~~~~~~~i~~~~~i~~~~~g~~v~~~~~~-~~~~~~~~~s~~ 101 (241)
T KOG3845|consen 27 WSVAKTLKLVTVESLA---GEKPKGNISRVRRFFC-LFVTEDLVFISLLWLIELLQNGPEVYNMLEK-IQKNTDIWTSEF 101 (241)
T ss_pred HHHHhhcceeEEeccC---CcCcCCcccccceeec-cccccchheeecchhhHHHhccchHHHHHHH-HHhheeeeeEec
Confidence 6666666667776432 2223444556555543 2222222223222233334443344445554 455666666554
Q ss_pred c---CCCCCCceEEEEEEEEEecCCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCC-ceEEEEEEEecCCCc
Q 015638 189 K---FPLLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRD-ACEIRIFHQEDAGLN 264 (403)
Q Consensus 189 k---~P~vS~RDfV~~rri~~~~d~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~-~c~VT~i~q~DpgG~ 264 (403)
. .-.+++|+|+....+.+.+........+.++++.++++..++|+.++.+|++..|++++. .+.-.-..|.|..|.
T Consensus 102 ~~~~~~i~~~~~~i~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~~~~~~~~~~~d~rg~ 181 (241)
T KOG3845|consen 102 DSFNVDIFRPRVFIDSGSVFRLEHMINIPVTTCVSRAFLSAKVILVRGYNHPCGVFCVPLPIEPFILAWLREWFLDLRGL 181 (241)
T ss_pred HhhhhhcccccccCCcceEeehhhccccccceeccchhhcccceeeeccCCcceEEEEEcCCcchhHHHHHHHHhhcccC
Confidence 2 225799999999888888766666777889999999999999999999999999987764 444445556677665
Q ss_pred --hhhHHHhHHhhHHHHHHHHHHHHHh
Q 015638 265 --VGMAKLAFAKGIWSYVCKMDNALRN 289 (403)
Q Consensus 265 --~~LvN~~v~~gm~~~lkkL~~al~k 289 (403)
+...+..+...+..+..+..++...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (241)
T KOG3845|consen 182 PQENVGERPEARTLVNFELAPLKAPKA 208 (241)
T ss_pred CCccccccccccccchhhcchhhcccc
Confidence 4555555555555555544444443
No 59
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=94.67 E-value=4 Score=39.09 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=96.1
Q ss_pred HHHHHhhcccCCCCCceEEEe-cCCcEEEEeeccccCCCCCeEEEEEEEecc-CCHHHHHHHhcCccchhhHHhhcceeE
Q 015638 94 FLIETLEDNFSENDKWENVID-KRNNLLYYNARCCKPKVGPLKYLSVTVFEN-CTPEILRDFYMDNDYRVRWDKTVVEHK 171 (403)
Q Consensus 94 ~ll~~l~e~~~~~~~Welv~d-k~gikVy~ka~R~~p~~G~~~yK~~tv~ed-aspe~V~d~l~D~e~R~~WD~~v~e~e 171 (403)
+++.+|+..+...++.++... .++..+|+++ ..+ ...-|....|++ =...++.+.|||++.-...|..+...+
T Consensus 23 EAv~~Lk~hAt~~ddY~ly~~~~~~~~~y~KK----~~n-tdI~K~~~~I~~pnkYneIIN~LWdpn~~~~fn~~~ikgk 97 (208)
T TIGR01599 23 EAELRLKRHAINKNDYNLYSTPNPDSTVYYKK----DHN-TIIGKIHLTIQDPNKYDAIIKTLWDFNDNKKFGRKFIKGK 97 (208)
T ss_pred HHHHHHHHhCcCCCCccccccCCCCceEEEee----cCC-cEEEEEEEEecCchhHHHHHHHHhccccccCCCchheeee
Confidence 333444444334568887654 4467778752 222 333466666642 235688899999999999999999999
Q ss_pred EEEEecCCCeEEEEEeccCCCCCCceEEEEEEE-EEecCCEEEEEEEeccCCCC-CC-CC--------------------
Q 015638 172 QLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRL-WEGRDQTFYCFSKECDHPLA-PP-QR-------------------- 228 (403)
Q Consensus 172 vLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri-~~~~d~~~~i~~kSVdhp~~-P~-~k-------------------- 228 (403)
++.. .+++..++....+-+..+..-|.++.-. .+..+++.+|+..|.+-.+. |. ++
T Consensus 98 i~Rv-YnpNLvmiqqry~~~~~~~~~YfyaLa~Kv~iSed~TiIv~~S~~ind~n~~~~~~~~n~iv~san~f~~~idse 176 (208)
T TIGR01599 98 VVRV-YSPNLIMIQQRYKDASGSPNKYFYALATKVKVSEDTTIIACTSANINDHNKVDKKNFKNKIIESANSFKTDIDSE 176 (208)
T ss_pred EEEE-eCCCeEEEEeecCCCCCCcceEEeEeeeeeecCCCcEEEEEeccccccCCccccccccceeeeecccccCccCHH
Confidence 9998 8888888888866555566666665422 22223344445555542211 11 11
Q ss_pred ------CcEEEEEeeeEEEEEeeCCCCceEEEEE
Q 015638 229 ------KYVRVTYFRSGWHIKKVPGRDACEIRIF 256 (403)
Q Consensus 229 ------g~VRv~~~~SgwvIrpv~g~~~c~VT~i 256 (403)
+......-++||+|+.- + +...|||+
T Consensus 177 ~dir~g~l~k~fvNl~G~~IkK~-~-d~v~iTyi 208 (208)
T TIGR01599 177 EDIRNGELKKMFVNLSGFIIKKK-D-DNIDITYV 208 (208)
T ss_pred HHHHhhhhhheEEeeEEEEEEec-C-CcEEEEEC
Confidence 12344556899999983 3 47888874
No 60
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=94.62 E-value=2.4 Score=35.67 Aligned_cols=131 Identities=13% Similarity=0.099 Sum_probs=71.5
Q ss_pred EEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEEEEE-
Q 015638 138 SVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCFS- 216 (403)
Q Consensus 138 ~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i~~- 216 (403)
....| ++||++|++++.|.+..++|..-.. ++.+...|..+.+.... + +++.....+.+.+.+..++..
T Consensus 4 ~~~~i-~ap~e~Vw~~~td~~~~~~W~~~~~----~~~~~~~G~~~~~~~~~-~----~~~~~~~~v~~~~~~~~l~~~~ 73 (136)
T cd08893 4 YVTYI-RATPEKVWQALTDPEFTRQYWGGTT----VESDWKVGSAFEYRRGD-D----GTVDVEGEVLESDPPRRLVHTW 73 (136)
T ss_pred EEEEe-cCCHHHHHHHHcCchhhhheecccc----cccCCcCCCeEEEEeCC-C----cccccceEEEEecCCCeEEEEE
Confidence 44566 4999999999999999999976521 22224455666554322 1 111111122222223333322
Q ss_pred EeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCchhhHHHhHHhhHHHHHHHHHHHHH
Q 015638 217 KECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLNVGMAKLAFAKGIWSYVCKMDNALR 288 (403)
Q Consensus 217 kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~~~LvN~~v~~gm~~~lkkL~~al~ 288 (403)
.....+..+. .. ...-.|.|+|.+ ++|++++.+..-+.+. ........|...++++|++.+.
T Consensus 74 ~~~~~~~~~~-~~-----~~~v~~~l~~~~--~~t~l~~~~~~~~~~~--~~~~~~~~gw~~~l~~Lk~~~e 135 (136)
T cd08893 74 RAVWDPEMAA-EP-----PSRVTFEIEPVG--DVVKLTVTHDGFPPGS--PTLEGVSGGWPAILSSLKTLLE 135 (136)
T ss_pred ecCCCcccCC-CC-----CEEEEEEEEecC--CcEEEEEEecCCCCch--hHHHhhhcCHHHHHHHHHHHhc
Confidence 2211110000 11 223457788853 3799888877655443 3344566788888888887664
No 61
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=94.61 E-value=1.4 Score=40.01 Aligned_cols=135 Identities=12% Similarity=0.099 Sum_probs=76.7
Q ss_pred EEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEE-e-cCCEEE
Q 015638 136 YLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWE-G-RDQTFY 213 (403)
Q Consensus 136 yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~-~-~d~~~~ 213 (403)
|..+..+ ++||++|+++|.|+|....=-+-+.. +|. .++ ........+.++++ .+|--..+.-. . +.+.|.
T Consensus 3 ~~G~f~V-~~p~e~Vw~~L~dpe~~a~ciPG~qs---~e~-~g~-e~~~~v~l~ig~l~-~~~~g~~~~~~v~~~~~~~~ 75 (146)
T COG3427 3 YEGTFRV-AAPPEAVWEFLNDPEQVAACIPGVQS---VET-NGD-EYTAKVKLKIGPLK-GTFSGRVRFVNVDEPPRSIT 75 (146)
T ss_pred ccceEEe-cCCHHHHHHHhcCHHHHHhhcCCcce---eee-cCC-eEEEEEEEeeccee-EEEEEEEEEccccCCCcEEE
Confidence 4555566 49999999999999987776665554 444 223 22233334677766 44443323222 1 123333
Q ss_pred EEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc-----hhhHHHhHHhhHHHHHHHHHHHHH
Q 015638 214 CFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN-----VGMAKLAFAKGIWSYVCKMDNALR 288 (403)
Q Consensus 214 i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~-----~~LvN~~v~~gm~~~lkkL~~al~ 288 (403)
+-..+ - .. -++ -.......+.| .|. +|++.|....|.+|. ..++..+..+.+-.++++|...+.
T Consensus 76 i~g~G--~-~~---~g~---~~~~~~v~l~~-~g~-gt~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~ 144 (146)
T COG3427 76 INGSG--G-GA---AGF---ADGTVDVQLEP-SGE-GTRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELA 144 (146)
T ss_pred EEeec--c-cc---cce---eeeeeEEEEEE-cCC-CcEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 32222 0 00 001 01112233455 244 599999999999998 466777777777777777766553
No 62
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=94.18 E-value=3.8 Score=36.32 Aligned_cols=118 Identities=8% Similarity=-0.016 Sum_probs=71.2
Q ss_pred EEEEEEeccCCHHHHHHHhcCcc--chhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEE
Q 015638 136 YLSVTVFENCTPEILRDFYMDND--YRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFY 213 (403)
Q Consensus 136 yK~~tv~edaspe~V~d~l~D~e--~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~ 213 (403)
+..+.+++ +|++++++++.|.+ ..+.|-+.+..+++++-+ ..--.|..+...... ..+. ..-++-..++....
T Consensus 3 ~~~e~~i~-a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~-~~~GsvR~~~~~~~~-~~~~--~kE~l~~~D~~~~~ 77 (148)
T cd07816 3 LEHEVELK-VPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGD-GGPGSIKLITFGPGG-KVKY--VKERIDAVDEENKT 77 (148)
T ss_pred EEEEEEec-CCHHHHHHHHhcChhhccccccccccEEEEEecC-CCCceEEEEEEcCCC-cceE--EEEEEEEEcccccE
Confidence 34566675 99999999999887 357899999999999852 222344444332222 1222 23344444442333
Q ss_pred EEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc
Q 015638 214 CFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN 264 (403)
Q Consensus 214 i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~ 264 (403)
+..+-++-+.. + -....|.+.+.+.|. ++++|.+.|...-++...
T Consensus 78 ~~y~vveg~~~---~--~~~~~y~~t~~v~~~-~~~~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 78 YKYTVIEGDVL---K--DGYKSYKVEIKFVPK-GDGGCVVKWTIEYEKKGD 122 (148)
T ss_pred EEEEEEecccc---c--CceEEEEEEEEEEEC-CCCCEEEEEEEEEEECCC
Confidence 33333332111 0 124567888999996 667899999888876553
No 63
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=94.09 E-value=3.7 Score=35.80 Aligned_cols=140 Identities=9% Similarity=0.105 Sum_probs=73.1
Q ss_pred EEEEEeccCCHHHHHHHhcCccchhhHHhhc-ceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEEEE
Q 015638 137 LSVTVFENCTPEILRDFYMDNDYRVRWDKTV-VEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCF 215 (403)
Q Consensus 137 K~~tv~edaspe~V~d~l~D~e~R~~WD~~v-~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i~ 215 (403)
..+..|+ +|+++|++++.|++...+|-.-- -.+...+-+...|....+... .| ...+|-..-.+.+.+.+..++.
T Consensus 3 ~i~r~i~-a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~-~~--~g~~~~~~g~v~~i~p~~~l~~ 78 (146)
T cd08896 3 VLSRTID-APRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPGGAFRTVMR-GP--DGEEFPNPGCFLEVVPGERLVF 78 (146)
T ss_pred EEEEEeC-CCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecCcEEEEEEE-CC--CCCEecceEEEEEEeCCCEEEE
Confidence 3445675 99999999999999999994310 011112212334444433321 11 1223322222333333334444
Q ss_pred EEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHHH
Q 015638 216 SKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALR 288 (403)
Q Consensus 216 ~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al~ 288 (403)
.-......-|......+ .-|.|+|. + ++|++++.+. .+... .....+.+..|....|.+|+..+.
T Consensus 79 t~~~~~~~~~~~~~~~~-----v~~~~~~~-~-~gT~Ltl~~~-~~~~~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 79 TDALTPGWRPAEKPFMT-----AIITFEDE-G-GGTRYTARAR-HWTEADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEeecCCcCCCCCCcEE-----EEEEEEec-C-CcEEEEEEEE-eCCHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 43332111222222222 34788885 3 4799997533 33222 334556667888999999887664
No 64
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=91.88 E-value=5.5 Score=35.37 Aligned_cols=130 Identities=11% Similarity=0.056 Sum_probs=70.9
Q ss_pred CCCeEEEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCC
Q 015638 131 VGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQ 210 (403)
Q Consensus 131 ~G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~ 210 (403)
+|...+....+|+ +|+++|++++.|++...+|.... ..+ +..|..+.+.... + .++-...++...+.+
T Consensus 8 ~~~~~i~~~~~i~-Ap~e~Vw~altdp~~~~~W~~~~----~~~--~~~G~~~~~~~~~-~----~~~~~~~~v~e~~p~ 75 (157)
T cd08899 8 DGGATLRFERLLP-APIEDVWAALTDPERLARWFAPG----TGD--LRVGGRVEFVMDD-E----EGPNATGTILACEPP 75 (157)
T ss_pred CCCeEEEEEEecC-CCHHHHHHHHcCHHHHHhhcCCC----CCC--cccCceEEEEecC-C----CCCccceEEEEEcCC
Confidence 5666677777885 99999999999999999999832 122 3445554443221 1 111111223333333
Q ss_pred EEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCchhhHHHhHHhhHHHHHHHHHHHHHh
Q 015638 211 TFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLNVGMAKLAFAKGIWSYVCKMDNALRN 289 (403)
Q Consensus 211 ~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~~~LvN~~v~~gm~~~lkkL~~al~k 289 (403)
..+...-. ..+ .. ....|.|++. + ++|+|++.+..-++-. ....+..|-..+|.+|++.+.+
T Consensus 76 ~~l~~~~~-~~~----~~-------~~~~~~l~~~-~-~gT~v~~~~~~~~~~~---~~~~~~~GW~~~L~~Lk~~~e~ 137 (157)
T cd08899 76 RLLAFTWG-EGG----GE-------SEVRFELAPE-G-DGTRLTLTHRLLDERF---GAGAVGAGWHLCLDVLEAALEG 137 (157)
T ss_pred cEEEEEec-CCC----CC-------ceEEEEEEEc-C-CCEEEEEEEeccCchh---hhhhhcccHHHHHHHHHHHHcC
Confidence 32322211 111 11 1235667874 3 4799998877654431 1233345555667666665553
No 65
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=85.35 E-value=23 Score=30.52 Aligned_cols=137 Identities=10% Similarity=-0.028 Sum_probs=70.3
Q ss_pred EEEEEeccCCHHHHHHHhcCccchhhHHhh--cceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEEE
Q 015638 137 LSVTVFENCTPEILRDFYMDNDYRVRWDKT--VVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYC 214 (403)
Q Consensus 137 K~~tv~edaspe~V~d~l~D~e~R~~WD~~--v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i 214 (403)
..+..|. +|+++|++++.|++...+|-.- --.++..+.+...|....+..... ....|-..-.+.+.+.+..+.
T Consensus 3 ~i~r~~~-ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~---~g~~~~~~g~~~~~~p~~~l~ 78 (143)
T cd08900 3 TLERTYP-APPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFRVGGREVSRGGPK---GGPEITVEARYHDIVPDERIV 78 (143)
T ss_pred EEEEEeC-CCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecCCCCEEEEEEECC---CCCEEeeeEEEEEecCCceEE
Confidence 3445675 9999999999999999999532 111223333344454444432211 233333333333433333333
Q ss_pred EEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEe-cCCCchhhHHHhHHhhHHHHHHHHHHHHH
Q 015638 215 FSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQE-DAGLNVGMAKLAFAKGIWSYVCKMDNALR 288 (403)
Q Consensus 215 ~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~-DpgG~~~LvN~~v~~gm~~~lkkL~~al~ 288 (403)
..-....+..|. ..- .--+.|+|. + ++|++++.++. .+..... ......|....+.+|++.+.
T Consensus 79 ~t~~~~~~~~~~--~~s-----~v~~~l~~~-~-~gT~l~~~~~~~~~~~~~~--~~~~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 79 YTYTMHIGGTLL--SAS-----LATVEFAPE-G-GGTRLTLTEQGAFLDGDDD--PAGREQGTAALLDNLAAELE 142 (143)
T ss_pred EEEeeccCCccc--cce-----EEEEEEEEC-C-CCEEEEEEEEEecccccch--hhhHHHHHHHHHHHHHHHHh
Confidence 332222222221 111 124567774 3 57999998774 2222211 13445666777777776653
No 66
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=83.58 E-value=29 Score=30.13 Aligned_cols=136 Identities=13% Similarity=0.102 Sum_probs=74.0
Q ss_pred EEEEEeccCCHHHHHHHhcCccchhhHHhhcc-eeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEEEE
Q 015638 137 LSVTVFENCTPEILRDFYMDNDYRVRWDKTVV-EHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCF 215 (403)
Q Consensus 137 K~~tv~edaspe~V~d~l~D~e~R~~WD~~v~-e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i~ 215 (403)
.....|+ +||++|++.+.|++...+|-.--. .+...+-+...|-...+.... + .+.++.+.-.+.+.+.+..++.
T Consensus 3 ~i~r~~~-ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~-~--~g~~~~~~g~~~ei~p~~~l~~ 78 (142)
T cd07826 3 VITREFD-APRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHRA-P--DGEEMGFHGVYHEVTPPERIVQ 78 (142)
T ss_pred EEEEEEC-CCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEEC-C--CCCEecceEEEEEEcCCCEEEE
Confidence 3455675 999999999999999999965431 222333334445444443221 1 1222222223333333334443
Q ss_pred EEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHHH
Q 015638 216 SKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNALR 288 (403)
Q Consensus 216 ~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al~ 288 (403)
.-..+. .| ... ...-|.+++. + ++|++++..+. +.-. .-.....+..|....+.+|.+.+.
T Consensus 79 t~~~~~--~~--~~~-----s~v~~~l~~~-~-~gT~l~l~~~~-~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 79 TEEFEG--LP--DGV-----ALETVTFTEL-G-GRTRLTATSRY-PSKEARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred EeEecC--CC--CCc-----eEEEEEEEEC-C-CCEEEEEEEEe-CCHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 333322 12 111 2235678875 3 57999975432 2211 235556677888889988887764
No 67
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=82.79 E-value=31 Score=29.91 Aligned_cols=136 Identities=14% Similarity=0.140 Sum_probs=69.6
Q ss_pred EEEEeccCCHHHHHHHhcCccchhhHHhhcc-eeEEEEEecCCCeE-EEEEeccCCC---CCCceEEEEEEEEEecCCEE
Q 015638 138 SVTVFENCTPEILRDFYMDNDYRVRWDKTVV-EHKQLQVDKTNGTE-IGRIIKKFPL---LTPREYVLAWRLWEGRDQTF 212 (403)
Q Consensus 138 ~~tv~edaspe~V~d~l~D~e~R~~WD~~v~-e~evLE~~~~~gt~-Ivy~v~k~P~---vS~RDfV~~rri~~~~d~~~ 212 (403)
....|. +|++.|++++.|.+...+|-.--. ...+.+-+...|.. -+++...-+. -...++...-.+.+.+.+..
T Consensus 4 ~~r~i~-ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p~~~ 82 (146)
T cd08895 4 LHRVIA-APPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELVPNER 82 (146)
T ss_pred EEEEEC-CCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEcCCCE
Confidence 344574 999999999999999999965211 12222222333333 3333322211 12233443334444443444
Q ss_pred EEEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCchhhHHHhHHhhHHHHHHHHHHHH
Q 015638 213 YCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLNVGMAKLAFAKGIWSYVCKMDNAL 287 (403)
Q Consensus 213 ~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~~~LvN~~v~~gm~~~lkkL~~al 287 (403)
+...-....+..| +. ..--|.|++. + ++|++++.+.--+.+ ........|--.+|.+|++.+
T Consensus 83 i~~~~~~~~~~~~---~~-----~~v~~~~~~~-~-~~T~lt~~~~~~~~~---~~~~~~~~GW~~~l~~L~~~l 144 (146)
T cd08895 83 IVYTDVFDDPSLS---GE-----MTMTWTLSPV-S-GGTDVTIVQSGIPDG---IPPEDCELGWQESLANLAALV 144 (146)
T ss_pred EEEEEEecCCCCC---ce-----EEEEEEEEec-C-CCEEEEEEEeCCCch---hhhhHHHHHHHHHHHHHHHHh
Confidence 4443333333332 11 1234677775 3 579999877532222 223345556666777776655
No 68
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=82.24 E-value=0.37 Score=52.12 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=60.1
Q ss_pred cCCCCCCceEEEEEEEEEecCCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc--hh
Q 015638 189 KFPLLTPREYVLAWRLWEGRDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VG 266 (403)
Q Consensus 189 k~P~vS~RDfV~~rri~~~~d~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~--~~ 266 (403)
.+-+...|||+..| +.++.+..+++|...+.-.| ||+.+..+-|.|+|. +.+.++++++...|++|. .|
T Consensus 572 s~~ph~~~~~~ViR-------gacv~a~~svk~~~a~~l~~-vrA~~~~~r~liep~-g~g~sr~~~i~r~dlkg~~~~w 642 (674)
T KOG2200|consen 572 SMRPHPSRDFGVIR-------GACVLAPLSVKVSMAIQLGG-VRATVLDSRFLIEPC-GGGQSRVTHICRVDLKGRSPEW 642 (674)
T ss_pred ccCCCCCCCceeee-------eeeeecccccchhhhhhhcc-chhhhhhhhhhcccc-CCcchhhhhhhhhhcccCCchh
Confidence 34467999999775 56778889999988877788 999999999999995 667889999999999998 55
Q ss_pred hHH
Q 015638 267 MAK 269 (403)
Q Consensus 267 LvN 269 (403)
.-+
T Consensus 643 y~k 645 (674)
T KOG2200|consen 643 YNK 645 (674)
T ss_pred hhc
Confidence 544
No 69
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=82.10 E-value=36 Score=30.21 Aligned_cols=140 Identities=11% Similarity=0.036 Sum_probs=72.2
Q ss_pred CCeEEEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCE
Q 015638 132 GPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQT 211 (403)
Q Consensus 132 G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~ 211 (403)
....++.+.+|. +|++.|++++.|++.+.+|-. -.. ..++. ...+...+.+....+.. |.....+.+...+.
T Consensus 6 ~~~~~~~er~i~-aP~e~Vf~A~Tdpe~l~~W~~-~~~-~~~d~-r~gg~~~~~~~~~~g~~----~~~~~~~~~v~p~~ 77 (149)
T COG3832 6 EDRTLEIERLID-APPEKVFEALTDPELLARWFM-PGG-AEFDA-RTGGGERVRFRGPDGPV----HSFEGEYLEVVPPE 77 (149)
T ss_pred CCceEEEEEeec-CCHHHHHHHhcCHHHHHhhcC-CCC-Cccce-ecCCceEEeeecCCCCe----eecceEEEEEcCCc
Confidence 345567888885 999999999999999999988 332 11121 12333444443333321 33333344444445
Q ss_pred EEEEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHHHHHHH
Q 015638 212 FYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCKMDNAL 287 (403)
Q Consensus 212 ~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkkL~~al 287 (403)
.++++-.-+....|..+ -..-+.+.|..+..+++++...+.-- .. .-.....+..|....+.+|.+.+
T Consensus 78 rIv~tw~~~~~~~~~~~-------~~v~~~l~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~Gw~~~~~~l~~~l 147 (149)
T COG3832 78 RIVFTWDFDEDGEPFLK-------SLVTITLTPEDDGGTTTLVRTSGGGF-LEDEDQKLGMGMEEGWGQLLDNLKALL 147 (149)
T ss_pred EEEEEeccCCCCCcccC-------ceEEEEEEEecCCCcEEEEEEeeccc-cchhHHHhCcchhhhHHHHHHHHHHhh
Confidence 55555444444444322 23345566642221444444333211 11 22223334666677777776554
No 70
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=78.07 E-value=52 Score=29.55 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=70.9
Q ss_pred EEEeccCCHHHHHHHhcCccchhhHHhhcc----eeEEEEEecCCCeEEEEEe--c--cCC-----CCCCceEEEEEEEE
Q 015638 139 VTVFENCTPEILRDFYMDNDYRVRWDKTVV----EHKQLQVDKTNGTEIGRII--K--KFP-----LLTPREYVLAWRLW 205 (403)
Q Consensus 139 ~tv~edaspe~V~d~l~D~e~R~~WD~~v~----e~evLE~~~~~gt~Ivy~v--~--k~P-----~vS~RDfV~~rri~ 205 (403)
...++ +|+++|++++.|.+|...=-..+. +...++. .+++..+.... - ++| ++...=-|.....|
T Consensus 4 ~~~~~-~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~-~~~g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e~w 81 (159)
T PF10698_consen 4 SVEYP-APVERVWAAFTDEDYWEARCAALGADNAEVESFEV-DGDGVRVTVRQTVPADKLPSAARKFVGGDLRVTRTETW 81 (159)
T ss_pred EEEcC-CCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEE-cCCeEEEEEEEecChhhCCHHHHHhcCCCeEEEEEEEE
Confidence 45675 999999999999887433222222 2333333 23333332222 1 456 24443333333457
Q ss_pred Ee-cCCEEEEEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc--hhhHHHhHHhhHHHHHHH
Q 015638 206 EG-RDQTFYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN--VGMAKLAFAKGIWSYVCK 282 (403)
Q Consensus 206 ~~-~d~~~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~--~~LvN~~v~~gm~~~lkk 282 (403)
.. +++.+- ....++-+..| +++ .+...++| +..+|++++-..+.-+.+ --.+..++...+-..+..
T Consensus 82 ~~~~~g~~~-g~~~~~~~G~P-----~~~---~G~~~L~~--~~~gt~~~~~g~v~v~VPlvGgkiE~~v~~~~~~~~~~ 150 (159)
T PF10698_consen 82 TPLDDGRRT-GTFTVSIPGAP-----VSI---SGTMRLRP--DGGGTRLTVEGEVKVKVPLVGGKIEKAVAENLRKLLEA 150 (159)
T ss_pred ecCCCCeEE-EEEEEEecCce-----EEE---EEEEEEec--CCCCEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHH
Confidence 43 344433 23333333333 332 24556776 445899999888888777 333344444444444544
Q ss_pred HHHHHHh
Q 015638 283 MDNALRN 289 (403)
Q Consensus 283 L~~al~k 289 (403)
-.....+
T Consensus 151 e~~~~~~ 157 (159)
T PF10698_consen 151 EQEFTAE 157 (159)
T ss_pred HHHHHHh
Confidence 4444443
No 71
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=72.09 E-value=63 Score=27.70 Aligned_cols=125 Identities=10% Similarity=0.064 Sum_probs=65.5
Q ss_pred EEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEE-EeccCCCCCCceEEEEEEEEEecCCEEEEEE
Q 015638 138 SVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGR-IIKKFPLLTPREYVLAWRLWEGRDQTFYCFS 216 (403)
Q Consensus 138 ~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy-~v~k~P~vS~RDfV~~rri~~~~d~~~~i~~ 216 (403)
....|+ +|+++|++.+.|++...+|=..-.. .+ ...|..+.+ +...-+ ++ .. ++.+.+.+..+...
T Consensus 4 ~~~~i~-ap~e~Vw~a~t~p~~l~~W~~~~~~---~~--~~~Gg~~~~~~~~~~~-----~~-~g-~~~~~~p~~~l~~~ 70 (136)
T cd08901 4 TAMLIR-RPVAEVFEAFVDPEITTKFWFTGSS---GR--LEEGKTVTWDWEMYGA-----SV-PV-NVLEIEPNKRIVIE 70 (136)
T ss_pred EEEEec-CCHHHHHHHhcCHHHhccccccCCC---cc--ccCCCEEEEEEEccCC-----ce-EE-EEEEEcCCCEEEEE
Confidence 445664 9999999999999999998433221 22 223333332 222111 11 11 22333333333332
Q ss_pred EeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCch-hhH-HHhHHhhHHHHHHHHHHHHH
Q 015638 217 KECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLNV-GMA-KLAFAKGIWSYVCKMDNALR 288 (403)
Q Consensus 217 kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~~-~Lv-N~~v~~gm~~~lkkL~~al~ 288 (403)
- ..+ .. ...-.|.+.+. ++++|++++.+.-=+.... .+. ......|...++.+|+..+.
T Consensus 71 w--~~~-----~~-----~s~v~~~l~~~-~~ggT~ltl~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~le 131 (136)
T cd08901 71 W--GDP-----GE-----PTTVEWTFEEL-DDGRTFVTITESGFPGTDDEGLKQALGSTEGWTLVLAGLKAYLE 131 (136)
T ss_pred e--cCC-----CC-----CEEEEEEEEEC-CCCcEEEEEEECCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 1 111 11 12246788885 4368999988543333222 221 22345777788888877664
No 72
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=66.92 E-value=53 Score=31.68 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=73.5
Q ss_pred EEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEEEE
Q 015638 136 YLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCF 215 (403)
Q Consensus 136 yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i~ 215 (403)
|...-.+ +.+|+++++++.|.+.+.++-+.++..++.++++ ++..+--....||++.-| |+..... ...+ .+.
T Consensus 70 Y~errli-gysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P-~~~~kA~LeVGFk~l~E~-y~S~Vt~-~~p~---l~k 142 (227)
T KOG3177|consen 70 YSERRLI-GYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRP-SGPLKADLEVGFKPLDER-YTSNVTC-VKPH---LTK 142 (227)
T ss_pred HHHHhhh-CCCHHHHHHHHHhHHHhhccccceeccceeecCC-CCCceeeEEecCcccchh-heeeeEE-eccc---ceE
Confidence 4444455 6999999999999999999999999999999854 444444444567764332 3322111 1111 111
Q ss_pred EEeccCCCCCCCCCcEEEE-EeeeEEEEEeeCCC-CceEEEEEEEecCCCc--hhhHHHhHH
Q 015638 216 SKECDHPLAPPQRKYVRVT-YFRSGWHIKKVPGR-DACEIRIFHQEDAGLN--VGMAKLAFA 273 (403)
Q Consensus 216 ~kSVdhp~~P~~kg~VRv~-~~~SgwvIrpv~g~-~~c~VT~i~q~DpgG~--~~LvN~~v~ 273 (403)
+...|+ |.. ..+.-|.|.|-++- +.|.+-+-.--..+-. ..|++++..
T Consensus 143 t~~~d~----------rLF~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S~lhs~va~~Ffd 194 (227)
T KOG3177|consen 143 TVCADG----------RLFNHLITIWSFKPGPNIPRTCTLDFSVSFEFKSLLHSQVATIFFD 194 (227)
T ss_pred Eeeccc----------cHHHhhhheeeeccCCCCCCeEEEEEEEEEEehhHHHHHHHHHHHH
Confidence 122222 222 24688999985422 4788887766666554 455555544
No 73
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=66.15 E-value=80 Score=26.58 Aligned_cols=137 Identities=9% Similarity=0.018 Sum_probs=67.8
Q ss_pred EEEEEEeccCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEEEE
Q 015638 136 YLSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCF 215 (403)
Q Consensus 136 yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i~ 215 (403)
+.....|. +|+++|++++.|.+...+|..-.. .... .+....+.. .++ ..+-......+.+.+.+..+..
T Consensus 3 i~~~i~i~-a~~e~Vw~~~td~~~~~~W~~~~~--~~~~----~~~~~~g~~-~~~--~~~~~~~~~~i~~~~p~~~l~~ 72 (145)
T cd08898 3 IERTILID-APRERVWRALTDPEHFGQWFGVKL--GPFV----VGEGATGEI-TYP--GYEHGVFPVTVVEVDPPRRFSF 72 (145)
T ss_pred eEEEEEec-CCHHHHHHHhcChhhhhhcccccC--CCcc----cCCcceeEE-ecC--CCCccceEEEEEEeCCCcEEEE
Confidence 34556675 999999999999999999987532 1111 111111111 111 1110111122333333333322
Q ss_pred E-Eecc-CCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc---hhhHHHhHHhhHHHHHHHHHHHHH
Q 015638 216 S-KECD-HPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN---VGMAKLAFAKGIWSYVCKMDNALR 288 (403)
Q Consensus 216 ~-kSVd-hp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~---~~LvN~~v~~gm~~~lkkL~~al~ 288 (403)
. .... .+..+.. +......-|.|+|. + ++|+|++.+.--+... ..-.......|...+|.+|++.|.
T Consensus 73 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~-~gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 73 RWHPPAIDPGEDYS----AEPSTLVEFTLEPI-A-GGTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred EecCCCcccccccC----CCCceEEEEEEEec-C-CcEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 2 1111 0011111 11112346778885 3 4799999876333221 111233566777788888877664
No 74
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=65.73 E-value=90 Score=27.05 Aligned_cols=138 Identities=11% Similarity=0.076 Sum_probs=71.4
Q ss_pred EEEEEeccCCHHHHHHHhcCccchhhHHhh---cc--eeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCE
Q 015638 137 LSVTVFENCTPEILRDFYMDNDYRVRWDKT---VV--EHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQT 211 (403)
Q Consensus 137 K~~tv~edaspe~V~d~l~D~e~R~~WD~~---v~--e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~ 211 (403)
+.+.+|. +|++.|++.+.| ...+|=.- .. .....+-+...|-...+ . .+ ..+++.. -++.+.+.+.
T Consensus 3 ~~~~~i~-Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~~~GG~~~~-~--~~--~g~~~~~-g~v~~v~p~~ 73 (149)
T cd08891 3 RKSVTVP-APPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEPRAGGRWYE-I--GE--DGTECEW-GTVLAWEPPS 73 (149)
T ss_pred EEEEEec-CCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcccCCcEEEE-e--cC--CCcEece-EEEEEEcCCC
Confidence 4556675 999999999998 46677421 11 01122222334444332 1 12 3455543 2334444344
Q ss_pred EEEEEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCC---c-hhhHHHhHHhhHHHHHHHHHHHH
Q 015638 212 FYCFSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGL---N-VGMAKLAFAKGIWSYVCKMDNAL 287 (403)
Q Consensus 212 ~~i~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG---~-~~LvN~~v~~gm~~~lkkL~~al 287 (403)
.++..-......-|.... ...--|.|+|. ++++|++++.+.--... + ..........|...+|.+|++.|
T Consensus 74 ~l~~tw~~~~~~~~~~~~-----~t~vt~~l~~~-~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l 147 (149)
T cd08891 74 RLVFTWQINADWRPDPDK-----ASEVEVRFEAV-GAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAA 147 (149)
T ss_pred EEEEEeccCCCcCcCCCC-----ceEEEEEEEEC-CCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHh
Confidence 444432211111111111 12346888984 42579999877643322 1 23445566778888998888877
Q ss_pred Hh
Q 015638 288 RN 289 (403)
Q Consensus 288 ~k 289 (403)
.|
T Consensus 148 ~~ 149 (149)
T cd08891 148 EK 149 (149)
T ss_pred cC
Confidence 53
No 75
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=58.46 E-value=1.1e+02 Score=25.84 Aligned_cols=128 Identities=8% Similarity=0.051 Sum_probs=64.7
Q ss_pred EEEEEeccCCHHHHHHHhcCccchhhHHhhccee--EEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEEE
Q 015638 137 LSVTVFENCTPEILRDFYMDNDYRVRWDKTVVEH--KQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYC 214 (403)
Q Consensus 137 K~~tv~edaspe~V~d~l~D~e~R~~WD~~v~e~--evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i 214 (403)
.....|+ +|+++|++++.|++...+|-.-.... ...+.+...|..+.+... .| =...++.+.-.+.+.+.+..++
T Consensus 3 ~~~~~~~-ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~-~~-~g~~~~~~~g~~~ei~p~~~l~ 79 (133)
T cd08897 3 TVETTVD-APIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFSYRME-AK-DGSMGFDFEGTYTEVEPHKLIE 79 (133)
T ss_pred EEEEEeC-CCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEEEEEE-cC-CCCcccccceEEEEECCCCEEE
Confidence 3445674 99999999999999999994321111 111222334444433221 11 0011111111222333333333
Q ss_pred EEEeccCCCCCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCchhhHHHhHHhhHHHHHHHHHHHHH
Q 015638 215 FSKECDHPLAPPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLNVGMAKLAFAKGIWSYVCKMDNALR 288 (403)
Q Consensus 215 ~~kSVdhp~~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~~~LvN~~v~~gm~~~lkkL~~al~ 288 (403)
..-. .+ ....|.|+|. + ++|++++.+...+. . .......|....|.+|++.|.
T Consensus 80 ~~~~---------~~------~~v~~~l~~~-~-~gT~l~l~~~~~~~---~-~~~~~~~GW~~~l~~L~~~le 132 (133)
T cd08897 80 YTME---------DG------REVEVEFTEE-G-DGTKVVETFDAENE---N-PVEMQRQGWQAILDNFKKYVE 132 (133)
T ss_pred EEcC---------CC------CEEEEEEEEC-C-CCEEEEEEECCCCC---C-cHHHHHHHHHHHHHHHHHHhh
Confidence 3211 01 1246788884 3 57999986332111 1 222455777778888877663
No 76
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=50.34 E-value=1.7e+02 Score=25.28 Aligned_cols=122 Identities=13% Similarity=0.133 Sum_probs=62.0
Q ss_pred cCCHHHHHHHhcCccchhhHHhhcceeEEEEEecCCCeEEEEEeccCCCCCCceEEEEEEEEEecCCEEEEEEEeccCCC
Q 015638 144 NCTPEILRDFYMDNDYRVRWDKTVVEHKQLQVDKTNGTEIGRIIKKFPLLTPREYVLAWRLWEGRDQTFYCFSKECDHPL 223 (403)
Q Consensus 144 daspe~V~d~l~D~e~R~~WD~~v~e~evLE~~~~~gt~Ivy~v~k~P~vS~RDfV~~rri~~~~d~~~~i~~kSVdhp~ 223 (403)
++||++|++.+.|++...+|-.. .. ..++ ...|-...+. . +. +.. ++.+.+.+..++.+-..+ .
T Consensus 2 ~ap~e~Vw~A~Tdp~~l~~w~~~-~~-~~~d--~~~GG~f~~~-~-------~~-~~G-~~~ev~pp~rlv~tw~~~--~ 65 (132)
T PTZ00220 2 YVPPEVLYNAFLDAYTLTRLSLG-SP-AEMD--AKVGGKFSLF-N-------GS-VEG-EFTELEKPKKIVQKWRFR--D 65 (132)
T ss_pred CCCHHHHHHHHcCHHHHHHHhcC-CC-cccc--CCcCCEEEEe-c-------Cc-eEE-EEEEEcCCCEEEEEEecC--C
Confidence 59999999999999999999421 11 1222 2333332221 1 11 111 222333233333332221 1
Q ss_pred CCCCCCcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc---hhhHHHhHHhhHHH-HHHHHHHHHH
Q 015638 224 APPQRKYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN---VGMAKLAFAKGIWS-YVCKMDNALR 288 (403)
Q Consensus 224 ~P~~kg~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~---~~LvN~~v~~gm~~-~lkkL~~al~ 288 (403)
.++ ..+- ..-|.|+|. ++++|++++.+.--+... .......+..|... ++.+|++.+.
T Consensus 66 ~~~-~~~s-----~vt~~~~~~-~~g~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ld~L~~~l~ 127 (132)
T PTZ00220 66 WEE-DVYS-----KVTIEFRAV-EEDHTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNFLDRFEKILG 127 (132)
T ss_pred CCC-CCce-----EEEEEEEeC-CCCcEEEEEEEecCccccccCCCchhhHHHhChHHHHHHHHHHHhC
Confidence 111 1111 245778874 445799999888433222 11233345677777 5888866553
No 77
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=47.70 E-value=8.1 Score=33.79 Aligned_cols=14 Identities=14% Similarity=0.430 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHHH
Q 015638 25 NATLIALFIILVYH 38 (403)
Q Consensus 25 ~~~~~~~~~~~~~~ 38 (403)
|++++++++|+|+-
T Consensus 5 ~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 5 FAIIIVAILLFLFL 18 (130)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 78
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=41.08 E-value=20 Score=31.36 Aligned_cols=18 Identities=6% Similarity=0.060 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHhhhh
Q 015638 25 NATLIALFIILVYHLSKT 42 (403)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~ 42 (403)
|+.++++++++++-|...
T Consensus 2 W~l~~iii~~i~l~~~~~ 19 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLF 19 (130)
T ss_pred eeeHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 79
>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=38.56 E-value=3e+02 Score=24.78 Aligned_cols=94 Identities=5% Similarity=0.026 Sum_probs=57.5
Q ss_pred hHHhhcceeEEEEEecCCCeEEEEEe------ccCC-C----CCCceEEEEE--EEEEecCCEEEEEEEeccCCCCCCCC
Q 015638 162 RWDKTVVEHKQLQVDKTNGTEIGRII------KKFP-L----LTPREYVLAW--RLWEGRDQTFYCFSKECDHPLAPPQR 228 (403)
Q Consensus 162 ~WD~~v~e~evLE~~~~~gt~Ivy~v------~k~P-~----vS~RDfV~~r--ri~~~~d~~~~i~~kSVdhp~~P~~k 228 (403)
-..+.+....+|++.++++.. .|.. ..+| + +...+.++.. .+.+....+..+.++.+.| .
T Consensus 14 p~~~hVl~~Dvl~r~vd~~g~-l~t~Rl~~~~~~~P~w~~kl~g~~~~~~~~E~S~vD~~~k~l~~~t~Nls~------~ 86 (157)
T PF04707_consen 14 PYSPHVLSVDVLDREVDPDGK-LHTKRLITKKNNLPRWLKKLIGVDSECYIIEESIVDPKNKTLTTKTRNLSF------S 86 (157)
T ss_pred CCCCceeEEEEEEEEEcCCCc-EEEeeeeeeecCchHHHHHHhCcCceEEEEEEEEEECCCCEEEEEEEEccc------C
Confidence 445677778888886655222 3332 2556 2 3424434433 3445556777777788777 5
Q ss_pred CcEEEEEeeeEEEEEeeCCCCceEEEEEEEecCCCc
Q 015638 229 KYVRVTYFRSGWHIKKVPGRDACEIRIFHQEDAGLN 264 (403)
Q Consensus 229 g~VRv~~~~SgwvIrpv~g~~~c~VT~i~q~DpgG~ 264 (403)
+++.++- .+-|.-.| ++++.|.++.....+.+|.
T Consensus 87 ~~~~v~E-~~~Y~~~p-~np~~T~~~q~a~i~~~~~ 120 (157)
T PF04707_consen 87 SFLSVEE-TCVYKPHP-DNPNWTLFKQEATISIKGS 120 (157)
T ss_pred ceeEEEE-EEEEEECC-CCCCcceEEEEEEEEEeCc
Confidence 6788775 34555555 2345899998888888773
No 80
>COG5580 Activator of HSP90 ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=20.38 E-value=1.7e+02 Score=28.77 Aligned_cols=112 Identities=12% Similarity=0.272 Sum_probs=62.5
Q ss_pred ecCCcEEEEeeccccCCCCCeEEEEEEEeccCCHHHHHHHhcCccchhhHHhhc---------ceeEEEEEecCCCeE-E
Q 015638 114 DKRNNLLYYNARCCKPKVGPLKYLSVTVFENCTPEILRDFYMDNDYRVRWDKTV---------VEHKQLQVDKTNGTE-I 183 (403)
Q Consensus 114 dk~gikVy~ka~R~~p~~G~~~yK~~tv~edaspe~V~d~l~D~e~R~~WD~~v---------~e~evLE~~~~~gt~-I 183 (403)
..++|++. +..+....|+ .+| |||..++.+++.|.++..-|...- -+..+|.+..+.+.+ +
T Consensus 138 hg~dIqv~------~~~tadi~~~--~tf-n~p~~ELy~tfLd~~ri~aWsrs~~~f~~~p~Lf~GnVi~~l~Ekdkkiv 208 (272)
T COG5580 138 HGRDIQVE------DARTADIIYK--ATF-NCPVDELYNTFLDHERISAWSRSRAMFEGDPILFDGNVIRRLREKDKKIV 208 (272)
T ss_pred cccCcccc------cccccceeee--ccc-CCcHHHHHHHhhCHHHhhhhcCChhhccCCCeEeccHHHHHHHHhCccEE
Confidence 34456654 2233344455 457 599999999999999999996432 222233222223334 4
Q ss_pred EEEe-ccCCCCCCceEEEEEEEEEec--CCEEEEEEEeccCCCCCC-CCCcEEEEEeeeEEEEEeeC
Q 015638 184 GRII-KKFPLLTPREYVLAWRLWEGR--DQTFYCFSKECDHPLAPP-QRKYVRVTYFRSGWHIKKVP 246 (403)
Q Consensus 184 vy~v-~k~P~vS~RDfV~~rri~~~~--d~~~~i~~kSVdhp~~P~-~kg~VRv~~~~SgwvIrpv~ 246 (403)
.+|. ..+| ||....-..+.. ...+.+..+++ |. ..+.||+. +.-|.|+|+.
T Consensus 209 ~~WkL~~Ws-----~~~e~tf~~~q~~s~tkl~vk~~gi-----PigEE~~vr~n--~qeyy~rpIk 263 (272)
T COG5580 209 MEWKLREWS-----DFTEATFMLEQYLSSTKLTVKQRGI-----PIGEEGSVRMN--WQEYYFRPIK 263 (272)
T ss_pred EEEEcccCc-----cccceEEEeccccccceEEEEEcCC-----ccCccceeeee--hhhhEeeehh
Confidence 4454 3566 666543222221 12344555655 43 35778875 4678888873
Done!