Query 015639
Match_columns 403
No_of_seqs 204 out of 1190
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 16:06:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015639.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015639hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 3.7E-16 1.3E-20 126.4 5.0 61 308-368 4-65 (82)
2 4h10_B Circadian locomoter out 99.6 4.1E-15 1.4E-19 118.1 6.9 59 308-366 6-65 (71)
3 4ati_A MITF, microphthalmia-as 99.5 6.3E-15 2.1E-19 126.9 6.8 63 305-367 22-88 (118)
4 1a0a_A BHLH, protein (phosphat 99.5 1.9E-15 6.6E-20 117.1 2.6 53 311-363 3-62 (63)
5 1an4_A Protein (upstream stimu 99.5 1.6E-15 5.6E-20 117.1 1.8 54 310-363 5-64 (65)
6 4h10_A ARYL hydrocarbon recept 99.5 3.4E-15 1.2E-19 119.0 3.1 56 306-361 5-64 (73)
7 1hlo_A Protein (transcription 99.5 5.5E-14 1.9E-18 112.8 5.7 59 310-368 12-72 (80)
8 1nkp_B MAX protein, MYC proto- 99.5 5.9E-14 2E-18 113.1 5.7 57 311-367 3-61 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 1.5E-13 5.2E-18 112.7 5.7 58 310-367 6-66 (88)
10 3u5v_A Protein MAX, transcript 99.4 2.2E-13 7.5E-18 109.3 5.6 58 310-367 5-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.3 3E-12 1E-16 103.5 6.4 57 311-367 2-61 (80)
12 4f3l_B BMAL1B; BHLH, PAS, circ 99.2 3E-12 1E-16 127.1 4.7 94 307-401 10-109 (387)
13 4f3l_A Mclock, circadian locom 99.2 8.7E-12 3E-16 122.2 6.6 93 308-401 10-108 (361)
14 1mdy_A Protein (MYOD BHLH doma 99.2 2.3E-11 7.9E-16 95.7 4.7 54 310-363 12-67 (68)
15 2ql2_B Neurod1, neurogenic dif 99.1 5.2E-11 1.8E-15 91.5 5.4 53 311-363 3-58 (60)
16 2lfh_A DNA-binding protein inh 98.7 3.4E-09 1.2E-13 83.5 2.1 46 315-360 19-67 (68)
17 4ath_A MITF, microphthalmia-as 98.7 2.7E-08 9.3E-13 81.1 5.9 47 321-367 3-53 (83)
18 4aya_A DNA-binding protein inh 98.3 1.3E-06 4.3E-11 73.2 7.4 52 317-368 32-86 (97)
19 3muj_A Transcription factor CO 49.6 20 0.0007 31.5 4.9 35 324-358 95-133 (138)
20 3lay_A Zinc resistance-associa 36.4 66 0.0023 29.0 6.3 42 321-364 90-131 (175)
21 1xkm_B Distinctin chain B; por 24.9 74 0.0025 20.2 3.1 20 345-364 3-22 (26)
22 1pd7_B MAD1; PAH2, SIN3, eukar 20.6 1E+02 0.0035 19.9 3.2 21 341-361 1-21 (26)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.61 E-value=3.7e-16 Score=126.43 Aligned_cols=61 Identities=31% Similarity=0.473 Sum_probs=56.6
Q ss_pred hhhhhccChHHHHHHHHHHHHHHHHHhccCCC-CCCchhhhHHHHHHHHHHHHHHHHHhccC
Q 015639 308 SRAAEVHNLSERRRRDRINEKMRALQELIPRC-NKSDKASMLDEAIEYLKSLQLQVQMMSMG 368 (403)
Q Consensus 308 ~~a~~~H~~~ERrRRekIne~~~~Lr~LVP~~-~K~dKAsIL~~AIeYIK~LQ~qvq~Ls~~ 368 (403)
..++..|+.+||+||++||++|.+|++|||++ .|+||++||.+||+||++||.+++.|..+
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e 65 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQE 65 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999998 79999999999999999999999999864
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.56 E-value=4.1e-15 Score=118.11 Aligned_cols=59 Identities=25% Similarity=0.459 Sum_probs=53.9
Q ss_pred hhhhhccChHHHHHHHHHHHHHHHHHhccCCC-CCCchhhhHHHHHHHHHHHHHHHHHhc
Q 015639 308 SRAAEVHNLSERRRRDRINEKMRALQELIPRC-NKSDKASMLDEAIEYLKSLQLQVQMMS 366 (403)
Q Consensus 308 ~~a~~~H~~~ERrRRekIne~~~~Lr~LVP~~-~K~dKAsIL~~AIeYIK~LQ~qvq~Ls 366 (403)
...+..|+.+||+||++||++|.+|+.|||.. .|+||++||++||+||++||.++.=|+
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34566899999999999999999999999975 599999999999999999999998776
No 3
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.54 E-value=6.3e-15 Score=126.85 Aligned_cols=63 Identities=37% Similarity=0.619 Sum_probs=51.0
Q ss_pred ccchhhhhccChHHHHHHHHHHHHHHHHHhccCCCC----CCchhhhHHHHHHHHHHHHHHHHHhcc
Q 015639 305 AKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCN----KSDKASMLDEAIEYLKSLQLQVQMMSM 367 (403)
Q Consensus 305 ~kr~~a~~~H~~~ERrRRekIne~~~~Lr~LVP~~~----K~dKAsIL~~AIeYIK~LQ~qvq~Ls~ 367 (403)
.++..++..|+.+||+||++||++|.+|++|||.|. |++|++||++||+||++||.+++.|..
T Consensus 22 ~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~ 88 (118)
T 4ati_A 22 AKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 88 (118)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456778999999999999999999999999985 678999999999999999999999975
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.53 E-value=1.9e-15 Score=117.07 Aligned_cols=53 Identities=30% Similarity=0.486 Sum_probs=48.2
Q ss_pred hhccChHHHHHHHHHHHHHHHHHhccCCC-------CCCchhhhHHHHHHHHHHHHHHHH
Q 015639 311 AEVHNLSERRRRDRINEKMRALQELIPRC-------NKSDKASMLDEAIEYLKSLQLQVQ 363 (403)
Q Consensus 311 ~~~H~~~ERrRRekIne~~~~Lr~LVP~~-------~K~dKAsIL~~AIeYIK~LQ~qvq 363 (403)
+.+|+.+||+||++||++|.+|+.|||.+ .|++||+||++||+||++||++++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 46799999999999999999999999966 467899999999999999998753
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.52 E-value=1.6e-15 Score=117.08 Aligned_cols=54 Identities=33% Similarity=0.554 Sum_probs=49.6
Q ss_pred hhhccChHHHHHHHHHHHHHHHHHhccCCCC------CCchhhhHHHHHHHHHHHHHHHH
Q 015639 310 AAEVHNLSERRRRDRINEKMRALQELIPRCN------KSDKASMLDEAIEYLKSLQLQVQ 363 (403)
Q Consensus 310 a~~~H~~~ERrRRekIne~~~~Lr~LVP~~~------K~dKAsIL~~AIeYIK~LQ~qvq 363 (403)
.+..|+.+||+||++||++|.+|+.|||.+. |++|++||++||+||++||.+++
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 4567999999999999999999999999886 78999999999999999998753
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.52 E-value=3.4e-15 Score=119.03 Aligned_cols=56 Identities=36% Similarity=0.591 Sum_probs=51.0
Q ss_pred cchhhhhccChHHHHHHHHHHHHHHHHHhccCCC----CCCchhhhHHHHHHHHHHHHHH
Q 015639 306 KRSRAAEVHNLSERRRRDRINEKMRALQELIPRC----NKSDKASMLDEAIEYLKSLQLQ 361 (403)
Q Consensus 306 kr~~a~~~H~~~ERrRRekIne~~~~Lr~LVP~~----~K~dKAsIL~~AIeYIK~LQ~q 361 (403)
+..+++..|+..||+||++||+.|.+|+.|||.| .|+|||+||++||+||+.|+.-
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence 4556778899999999999999999999999987 6999999999999999999743
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.45 E-value=5.5e-14 Score=112.84 Aligned_cols=59 Identities=29% Similarity=0.533 Sum_probs=54.8
Q ss_pred hhhccChHHHHHHHHHHHHHHHHHhccCCC--CCCchhhhHHHHHHHHHHHHHHHHHhccC
Q 015639 310 AAEVHNLSERRRRDRINEKMRALQELIPRC--NKSDKASMLDEAIEYLKSLQLQVQMMSMG 368 (403)
Q Consensus 310 a~~~H~~~ERrRRekIne~~~~Lr~LVP~~--~K~dKAsIL~~AIeYIK~LQ~qvq~Ls~~ 368 (403)
.+..|+..||+||++||++|..|+.+||.+ .|++|++||..||+||++|+.+++.|..+
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e 72 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQD 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999987 59999999999999999999999999754
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.45 E-value=5.9e-14 Score=113.11 Aligned_cols=57 Identities=30% Similarity=0.553 Sum_probs=53.1
Q ss_pred hhccChHHHHHHHHHHHHHHHHHhccCCC--CCCchhhhHHHHHHHHHHHHHHHHHhcc
Q 015639 311 AEVHNLSERRRRDRINEKMRALQELIPRC--NKSDKASMLDEAIEYLKSLQLQVQMMSM 367 (403)
Q Consensus 311 ~~~H~~~ERrRRekIne~~~~Lr~LVP~~--~K~dKAsIL~~AIeYIK~LQ~qvq~Ls~ 367 (403)
+..|+..||+||++||++|..|+++||.+ .|++|++||.+||+||++|+.+++.|..
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~ 61 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999985 6999999999999999999999888874
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.41 E-value=1.5e-13 Score=112.70 Aligned_cols=58 Identities=31% Similarity=0.485 Sum_probs=53.0
Q ss_pred hhhccChHHHHHHHHHHHHHHHHHhccCCC---CCCchhhhHHHHHHHHHHHHHHHHHhcc
Q 015639 310 AAEVHNLSERRRRDRINEKMRALQELIPRC---NKSDKASMLDEAIEYLKSLQLQVQMMSM 367 (403)
Q Consensus 310 a~~~H~~~ERrRRekIne~~~~Lr~LVP~~---~K~dKAsIL~~AIeYIK~LQ~qvq~Ls~ 367 (403)
.+..||..||+||++||++|..|+++||.+ .|.+|++||.+||+||++|+.+++.|..
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~ 66 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS 66 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355799999999999999999999999986 5999999999999999999999887754
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.40 E-value=2.2e-13 Score=109.28 Aligned_cols=58 Identities=31% Similarity=0.443 Sum_probs=50.0
Q ss_pred hhhccChHHHHHHHHHHHHHHHHHhccCCC---CCC-chhhhHHHHHHHHHHHHHHHHHhcc
Q 015639 310 AAEVHNLSERRRRDRINEKMRALQELIPRC---NKS-DKASMLDEAIEYLKSLQLQVQMMSM 367 (403)
Q Consensus 310 a~~~H~~~ERrRRekIne~~~~Lr~LVP~~---~K~-dKAsIL~~AIeYIK~LQ~qvq~Ls~ 367 (403)
++..||..||+||+.||++|.+|+.+||.+ .|. +|++||..||+||++||+++++++.
T Consensus 5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 5 KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355799999999999999999999999953 455 7999999999999999999999984
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.29 E-value=3e-12 Score=103.46 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=52.3
Q ss_pred hhccChHHHHHHHHHHHHHHHHHhccCCC---CCCchhhhHHHHHHHHHHHHHHHHHhcc
Q 015639 311 AEVHNLSERRRRDRINEKMRALQELIPRC---NKSDKASMLDEAIEYLKSLQLQVQMMSM 367 (403)
Q Consensus 311 ~~~H~~~ERrRRekIne~~~~Lr~LVP~~---~K~dKAsIL~~AIeYIK~LQ~qvq~Ls~ 367 (403)
+..||..||+||+.||++|..|+++||.+ .|.+|+.||.+|++||++|+.+.+.|..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~ 61 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34699999999999999999999999965 5889999999999999999999988764
No 12
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.24 E-value=3e-12 Score=127.14 Aligned_cols=94 Identities=26% Similarity=0.377 Sum_probs=73.9
Q ss_pred chhhhhccChHHHHHHHHHHHHHHHHHhccC----CCCCCchhhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCc--hhh
Q 015639 307 RSRAAEVHNLSERRRRDRINEKMRALQELIP----RCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGVVPMMFP--GVQ 380 (403)
Q Consensus 307 r~~a~~~H~~~ERrRRekIne~~~~Lr~LVP----~~~K~dKAsIL~~AIeYIK~LQ~qvq~Ls~~~~~~P~~~~--~~~ 380 (403)
.+.++.+|+.+||+||++||+.|.+|+.||| ...|+||++||+.||+|||.|+........ ....|..+. .+.
T Consensus 10 ~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~ 88 (387)
T 4f3l_B 10 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPYTE-ANYKPTFLSDDELK 88 (387)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC-------CCSSCTTSCHHHHH
T ss_pred hhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcccccccc-cccCcccCCHHHHH
Confidence 3445678999999999999999999999999 457999999999999999999854332222 233466665 577
Q ss_pred hccccccccccccccCccccc
Q 015639 381 QYMPNMGMGIGMGMGMGRAWI 401 (403)
Q Consensus 381 ~~m~~mg~gm~~~~g~~~~~i 401 (403)
++|.....||.+.+.++-|+|
T Consensus 89 ~~ll~~~~gfi~v~~~~~G~i 109 (387)
T 4f3l_B 89 HLILRAADGFLFVVGCDRGKI 109 (387)
T ss_dssp HHHHHTCCSEEEEEETTTCBE
T ss_pred HHHHhcCCCEEEEEecCCeEE
Confidence 888899999999999876776
No 13
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.22 E-value=8.7e-12 Score=122.19 Aligned_cols=93 Identities=22% Similarity=0.327 Sum_probs=65.4
Q ss_pred hhhhhccChHHHHHHHHHHHHHHHHHhccC-CCCCCchhhhHHHHHHHHHHHHHHHHHhc---cCCCCCCCCCc--hhhh
Q 015639 308 SRAAEVHNLSERRRRDRINEKMRALQELIP-RCNKSDKASMLDEAIEYLKSLQLQVQMMS---MGCGVVPMMFP--GVQQ 381 (403)
Q Consensus 308 ~~a~~~H~~~ERrRRekIne~~~~Lr~LVP-~~~K~dKAsIL~~AIeYIK~LQ~qvq~Ls---~~~~~~P~~~~--~~~~ 381 (403)
..++..|+.+||+||++||+.|.+|+.||| ...|+||++||++||+|||.|+....... ......|..+. .+.+
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETTAQSDASEIRQDWKPTFLSNEEFTQ 89 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHHTSCSCGGGTSCCSCTTSCHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccCcccccHHHHHH
Confidence 344667999999999999999999999999 55799999999999999999987643221 11234466665 4667
Q ss_pred ccccccccccccccCccccc
Q 015639 382 YMPNMGMGIGMGMGMGRAWI 401 (403)
Q Consensus 382 ~m~~mg~gm~~~~g~~~~~i 401 (403)
++.....||.+.+..+ |+|
T Consensus 90 ~~l~a~~~~i~v~~~~-G~i 108 (361)
T 4f3l_A 90 LMLEALDGFFLAIMTD-GSI 108 (361)
T ss_dssp HHHHHTTEEEEEEETT-SBE
T ss_pred HHHHhcCceEEEEcCC-ccE
Confidence 7777778887777665 554
No 14
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.15 E-value=2.3e-11 Score=95.69 Aligned_cols=54 Identities=26% Similarity=0.450 Sum_probs=48.9
Q ss_pred hhhccChHHHHHHHHHHHHHHHHHhccCCC--CCCchhhhHHHHHHHHHHHHHHHH
Q 015639 310 AAEVHNLSERRRRDRINEKMRALQELIPRC--NKSDKASMLDEAIEYLKSLQLQVQ 363 (403)
Q Consensus 310 a~~~H~~~ERrRRekIne~~~~Lr~LVP~~--~K~dKAsIL~~AIeYIK~LQ~qvq 363 (403)
.+..||..||+|+..||+.|..|+++||.. .|++|+.||..||+||++||+.++
T Consensus 12 rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 12 RRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 355699999999999999999999999975 589999999999999999998653
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.12 E-value=5.2e-11 Score=91.46 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=48.2
Q ss_pred hhccChHHHHHHHHHHHHHHHHHhccCCC---CCCchhhhHHHHHHHHHHHHHHHH
Q 015639 311 AEVHNLSERRRRDRINEKMRALQELIPRC---NKSDKASMLDEAIEYLKSLQLQVQ 363 (403)
Q Consensus 311 ~~~H~~~ERrRRekIne~~~~Lr~LVP~~---~K~dKAsIL~~AIeYIK~LQ~qvq 363 (403)
+..||..||+|+..||+.|..|+.+||.. .|++|+.||..||+||++||+.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 34589999999999999999999999975 489999999999999999998764
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.71 E-value=3.4e-09 Score=83.47 Aligned_cols=46 Identities=24% Similarity=0.394 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhccCCC---CCCchhhhHHHHHHHHHHHHH
Q 015639 315 NLSERRRRDRINEKMRALQELIPRC---NKSDKASMLDEAIEYLKSLQL 360 (403)
Q Consensus 315 ~~~ERrRRekIne~~~~Lr~LVP~~---~K~dKAsIL~~AIeYIK~LQ~ 360 (403)
+..||+|+..||+.|..||++||.. .|++|..||+.||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4678999999999999999999976 589999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.66 E-value=2.7e-08 Score=81.12 Aligned_cols=47 Identities=30% Similarity=0.557 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhccCCCC----CCchhhhHHHHHHHHHHHHHHHHHhcc
Q 015639 321 RRDRINEKMRALQELIPRCN----KSDKASMLDEAIEYLKSLQLQVQMMSM 367 (403)
Q Consensus 321 RRekIne~~~~Lr~LVP~~~----K~dKAsIL~~AIeYIK~LQ~qvq~Ls~ 367 (403)
-|..||++|.+|..|||.++ |.+|++||..||+||++||++++.+.+
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e 53 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 53 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999864 789999999999999999987766553
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.31 E-value=1.3e-06 Score=73.19 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC---CCCchhhhHHHHHHHHHHHHHHHHHhccC
Q 015639 317 SERRRRDRINEKMRALQELIPRC---NKSDKASMLDEAIEYLKSLQLQVQMMSMG 368 (403)
Q Consensus 317 ~ERrRRekIne~~~~Lr~LVP~~---~K~dKAsIL~~AIeYIK~LQ~qvq~Ls~~ 368 (403)
.|+.|-..||+.|..||.+||.. .|++|..+|..||+||++|+..++.-...
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~ 86 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLKP 86 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34678889999999999999965 48999999999999999999998876643
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=49.62 E-value=20 Score=31.52 Aligned_cols=35 Identities=29% Similarity=0.501 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhccCCC----CCCchhhhHHHHHHHHHHH
Q 015639 324 RINEKMRALQELIPRC----NKSDKASMLDEAIEYLKSL 358 (403)
Q Consensus 324 kIne~~~~Lr~LVP~~----~K~dKAsIL~~AIeYIK~L 358 (403)
.|.=+|..|+++||.. .++-|-.||..|.|+++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 4778999999999976 3788999999999999876
No 20
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=36.44 E-value=66 Score=28.96 Aligned_cols=42 Identities=17% Similarity=0.221 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhccCCCCCCchhhhHHHHHHHHHHHHHHHHH
Q 015639 321 RRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQM 364 (403)
Q Consensus 321 RRekIne~~~~Lr~LVP~~~K~dKAsIL~~AIeYIK~LQ~qvq~ 364 (403)
-|+.|..+-.+|++|+-. .+.|.+.|- ..++=|..|+.++..
T Consensus 90 Lr~ql~akr~EL~aL~~a-~~~DeakI~-aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 90 LRQQLISKRYEYNALLTA-SSPDTAKIN-AVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHTS-SSCCHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHH-HHHHHHHHHHHHHHH
Confidence 467788888999998865 345554443 334444555554433
No 21
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=24.94 E-value=74 Score=20.15 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 015639 345 ASMLDEAIEYLKSLQLQVQM 364 (403)
Q Consensus 345 AsIL~~AIeYIK~LQ~qvq~ 364 (403)
.+-|-+|-.|+.+|+.+++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 45677899999999998764
No 22
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=20.61 E-value=1e+02 Score=19.92 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=16.6
Q ss_pred CCchhhhHHHHHHHHHHHHHH
Q 015639 341 KSDKASMLDEAIEYLKSLQLQ 361 (403)
Q Consensus 341 K~dKAsIL~~AIeYIK~LQ~q 361 (403)
|+....+|-+|.+||...+++
T Consensus 1 ~~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHh
Confidence 356778899999999987764
Done!