Query 015641
Match_columns 403
No_of_seqs 218 out of 362
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:12:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2568 Predicted membrane pro 100.0 1.1E-89 2.3E-94 705.5 29.6 363 23-397 11-377 (518)
2 PF06814 Lung_7-TM_R: Lung sev 100.0 8.2E-51 1.8E-55 399.6 23.0 218 180-397 1-224 (295)
3 KOG2569 G protein-coupled seve 99.9 3.3E-24 7.2E-29 213.1 2.2 216 175-397 123-363 (440)
4 PF10192 GpcrRhopsn4: Rhodopsi 99.2 1.1E-09 2.3E-14 106.4 17.2 199 200-399 2-212 (257)
5 KOG4290 Predicted membrane pro 97.5 0.0052 1.1E-07 62.4 16.2 171 213-390 160-337 (429)
6 KOG2569 G protein-coupled seve 70.6 7.3 0.00016 40.5 5.1 85 177-261 296-394 (440)
7 PF06123 CreD: Inner membrane 59.8 50 0.0011 35.0 9.0 84 175-263 239-335 (430)
8 PF03040 CemA: CemA family; I 58.1 6.8 0.00015 38.0 2.2 39 345-384 178-216 (230)
9 CHL00043 cemA envelope membran 57.3 7.1 0.00015 38.5 2.1 39 345-384 209-247 (261)
10 PF09437 Pombe_5TM: Pombe spec 50.9 3.8 8.2E-05 38.1 -0.8 135 176-321 36-182 (256)
11 PRK02507 proton extrusion prot 50.9 11 0.00024 39.6 2.4 40 344-384 369-408 (422)
12 PF06664 MIG-14_Wnt-bd: Wnt-bi 50.7 2.6E+02 0.0056 27.6 18.8 140 247-395 78-229 (298)
13 PF14089 KbaA: KinB-signalling 40.5 2.6E+02 0.0057 26.2 9.5 61 307-372 110-170 (180)
14 TIGR02908 CoxD_Bacillus cytoch 34.9 3E+02 0.0065 23.8 9.8 50 251-300 50-99 (110)
15 PF02699 YajC: Preprotein tran 29.7 76 0.0017 25.6 3.7 37 362-401 3-39 (82)
16 PF13491 DUF4117: Domain of un 29.1 4E+02 0.0088 23.5 10.2 67 206-272 41-108 (171)
17 PF11694 DUF3290: Protein of u 29.0 2E+02 0.0043 26.0 6.7 52 228-284 21-76 (149)
18 PRK06265 cobalt transport prot 28.7 3.6E+02 0.0078 25.2 8.6 24 362-385 169-192 (199)
19 TIGR00739 yajC preprotein tran 26.9 53 0.0011 26.8 2.3 31 362-392 4-34 (84)
20 PF08636 Pkr1: ER protein Pkr1 26.8 3.4E+02 0.0074 21.9 7.2 48 223-274 19-66 (75)
21 COG3197 FixS Uncharacterized p 25.5 77 0.0017 24.3 2.8 20 360-379 3-22 (58)
22 TIGR00847 ccoS cytochrome oxid 23.1 61 0.0013 24.2 1.8 21 360-380 3-23 (51)
23 PF00226 DnaJ: DnaJ domain; I 22.7 26 0.00056 26.1 -0.2 13 391-403 20-32 (64)
24 COG3898 Uncharacterized membra 22.2 3.6E+02 0.0078 28.8 7.8 34 303-336 4-37 (531)
25 cd06257 DnaJ DnaJ domain or J- 22.1 25 0.00054 25.1 -0.4 18 386-403 14-32 (55)
26 PRK10263 DNA translocase FtsK; 21.9 9E+02 0.02 29.6 11.8 41 208-248 60-101 (1355)
27 PF03597 CcoS: Cytochrome oxid 21.8 85 0.0018 22.8 2.3 21 360-380 2-22 (45)
28 PF05875 Ceramidase: Ceramidas 21.5 5.7E+02 0.012 24.6 8.8 21 228-248 31-51 (262)
29 PRK05585 yajC preprotein trans 21.3 89 0.0019 26.6 2.7 34 361-394 18-51 (106)
30 KOG4320 Uncharacterized conser 20.9 8.2E+02 0.018 24.2 10.5 33 218-250 44-76 (253)
31 PF05884 ZYG-11_interact: Inte 20.6 3E+02 0.0065 27.9 6.6 50 225-275 245-294 (299)
32 cd08690 C2_Freud-1 C2 domain f 20.5 2.1E+02 0.0045 25.9 5.2 13 70-82 20-32 (155)
No 1
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.1e-89 Score=705.48 Aligned_cols=363 Identities=46% Similarity=0.793 Sum_probs=341.9
Q ss_pred hhhcceeeeeeccCCCccCCCCeEEEecCceeeeccCCCCCCCCCCCCCCCCC--cceEEEeceEeecCccccccccccc
Q 015641 23 LITNVSGSIHEYKNEAFYPKSNAFFFHGGSEGLYASKLLHSPDASSSDKPLKG--KSFIRFETVTFVRPKESASKQNEMQ 100 (403)
Q Consensus 23 ~~~~~~~s~h~y~~~~f~~~~~a~~~~~g~~G~y~~~~~~~~~~~~~~~~g~~--~s~I~f~~~~f~~~~~~~~~~~~~~ 100 (403)
+.+.+.+++|+|..++|....|++.+||+|+|+|++.. ++ ..++- .|||||+++++.|+++.++++|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ys~~~---~d-----~~~s~~p~~~~~f~~~t~~~~~~~~~~~n~-- 80 (518)
T KOG2568|consen 11 ISLLAWLSFLSYVYSEFASELNAQHFHGVSEGIYSSFV---SD-----LFGSLDPESFIRFDSITLVRTSESADEQNS-- 80 (518)
T ss_pred HHHhhhHhheechhhhhhhhhcceeeeccccccccccH---HH-----hcCCCCccccccceeEEEEEccCccccccc--
Confidence 33445899999999999999999999999999999942 12 23332 66999999999999886655443
Q ss_pred cccceEEEEEEeehhhhhccCccC-CCeeeecCcccccCCCCCCCcEEecCCCCCCCCceeEEeeecCCcccccc-ceeE
Q 015641 101 TITGMVEAIILEVKERERIGGSFL-KTDLLCCTHNLSKEGSCSVGEVIIHVDPENHEWPRRIKAFFQGTNEETQI-SEEV 178 (403)
Q Consensus 101 ~~~g~V~~vIfe~~D~~~iG~~~~-g~~~~cC~~~~~~~g~C~~g~fIi~~~~~~~~~~~~~~~~f~~~~~~~~l-~~~y 178 (403)
.|.|+++|||+||+++||++.+ |++.||||+++++.|.|++|++|+.|++++|.||++..+.+++++.+..+ +..|
T Consensus 81 --~~~v~~~ife~kd~~~iG~~~~~~e~~~~C~~~~~~~g~c~~~~~i~~~~~~dp~~~~~~~~~~t~~~~e~~m~~~~~ 158 (518)
T KOG2568|consen 81 --NGLVEALIFEFKDRNKIGGSDDDGEKLYICTPDLADTGSCKEGEVIYLPNPTDPEWPKLNSVILTFNDAEVGMSPPAY 158 (518)
T ss_pred --ccceeeeeeehhhhhccCCcCCCCceEEecCHhHHhcCCcCCCceEEecCCCCCCcccccceeecccccccCCCCceE
Confidence 6999999999999999999987 89999999999999999999999999999999999999999888777777 8899
Q ss_pred EeCCCceEEEEEEEeCCCCCceEEEEEEEEECCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 015641 179 EIERTGMYYLYFMYCDPQLKGTMIKGRTVWKNPDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYI 258 (403)
Q Consensus 179 ~I~~tG~Y~v~~~~C~~~~~~~~~~g~v~f~NpyGyLpa~~~pll~fY~~m~i~Y~vl~~~W~~~~~k~rkdll~Iq~~I 258 (403)
+|++||+||+++.+|+++.++.+.+|+|+||||||||||+++|+|+||++|+++|.+++++|+++|+|||||+||||+||
T Consensus 159 ~I~ktG~Y~v~~~~~~~s~~~~~~~~~v~wkNpyGyL~a~~~Plm~fy~~m~laYvllgllW~~~~~~y~~diL~lQ~~I 238 (518)
T KOG2568|consen 159 PIKKTGYYCVYFISCDSSLESYKATGSVNWKNPYGYLPASDAPLMPFYGFMCLAYVLLGLLWFFQCAQYWHDILPLQKYI 238 (518)
T ss_pred EeccCcEEEEEEEeecCccccccccceEEEECCCCCcChhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccceeeeccCceeeeEeeehhHHHH
Q 015641 259 TGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLVYFV 338 (403)
Q Consensus 259 ~avi~l~~le~~~~~~~y~~~N~~G~~~~~~~v~~~il~a~k~tls~~LlLlVsmGyGVVkp~Lg~~~~kv~~l~~~yfv 338 (403)
++||+|+|+|++++|.+|++.|.+|.++++.++++++++|+|+|++|+|+|+||||||||||+||+.+.|+..+|++||+
T Consensus 239 ~~Vi~lgm~E~av~y~~y~~~N~tG~~~~~~~~~a~i~sa~K~Tlsr~LlLIVSlGYGIVkP~Lg~~l~rv~~ig~~~~i 318 (518)
T KOG2568|consen 239 TAVIALGMAETAVFYSEYANFNSTGMSPKVYTVFASILSAIKKTLSRLLLLIVSLGYGIVKPTLGGTLLRVCQIGVIYFI 318 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCcchHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcceec
Q 015641 339 ASEALEMFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQVMFCVML 397 (403)
Q Consensus 339 ~s~~~~v~~~~~~~~d~s~~~~l~~~lPla~~~~~f~~WIf~SL~~T~~~L~~rrq~~~ 397 (403)
++++.++++++++++|.++.+.++.++|+|++|++|++|||.||++|||+||+|||+||
T Consensus 319 ~s~i~~l~~~~g~~se~~~~~~lf~~ip~ai~d~~f~~wIF~SL~~Tlk~Lr~rRn~vK 377 (518)
T KOG2568|consen 319 ASEILGLARVIGNISELSSLLILFAALPLAILDAAFIYWIFISLAKTLKKLRLRRNIVK 377 (518)
T ss_pred HHHHHHHHHHhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997
No 2
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=8.2e-51 Score=399.57 Aligned_cols=218 Identities=38% Similarity=0.710 Sum_probs=206.3
Q ss_pred eCCCceEEEEEEEeCCCC----CceEEEEEEEEECCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 015641 180 IERTGMYYLYFMYCDPQL----KGTMIKGRTVWKNPDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLH 255 (403)
Q Consensus 180 I~~tG~Y~v~~~~C~~~~----~~~~~~g~v~f~NpyGyLpa~~~pll~fY~~m~i~Y~vl~~~W~~~~~k~rkdll~Iq 255 (403)
|+|||+||+++++|+|+. ++.+++|+++|+||||||||+|+|++++|++|+++|+++++.|++.+.||||+++|||
T Consensus 1 i~~~G~Y~~~~~~C~~~~~~~~~~~~~~~~i~~~N~~gyL~a~~~pl~~~y~~~~i~y~~~~~~W~~~~~~~~~~~~~ih 80 (295)
T PF06814_consen 1 ITKTGYYCVFFANCNPSTSSSNSNISFEGSITFKNPYGYLPAGEYPLPPFYGVMSIVYAVLLIIWLFLCFKNRKSVLPIH 80 (295)
T ss_pred CCCceEEEEEEEEcCCccccCCcceEEEEEEEEECCCCCCChhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH
Confidence 689999999999998753 6789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccceeeeccCceeeeEeeehhH
Q 015641 256 YYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLV 335 (403)
Q Consensus 256 ~~I~avi~l~~le~~~~~~~y~~~N~~G~~~~~~~v~~~il~a~k~tls~~LlLlVsmGyGVVkp~Lg~~~~kv~~l~~~ 335 (403)
++|+++++++++|+++++.+|++.|.+|.++.++.+++++++++|++++|+++|+||||||++||+|+++++|+++++++
T Consensus 81 ~~i~~vl~l~~~~~~~~~~~y~~~n~~G~~~~~~~~~~~i~~~~k~~~~~~llllis~Gygivkp~L~~~~~~v~~l~i~ 160 (295)
T PF06814_consen 81 YLILAVLILKMLELAFWFIYYHYINKTGTPSEGWMIFAYIFSALKRTLSFFLLLLISLGYGIVKPSLGRREKKVLMLVIL 160 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcchheeccccCcceeehhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCC--ceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcceec
Q 015641 336 YFVASEALEMFENLGNINDFSG--KAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQVMFCVML 397 (403)
Q Consensus 336 yfv~s~~~~v~~~~~~~~d~s~--~~~l~~~lPla~~~~~f~~WIf~SL~~T~~~L~~rrq~~~ 397 (403)
||+++.+..+++..+...|.+. ...+++++|+++++++|++||++||++|+++||+|||..|
T Consensus 161 ~~v~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wi~~sL~~t~~~lk~~~q~~K 224 (295)
T PF06814_consen 161 YFVFSNIAYIIREESSPSDSSYASWNFIFFLLPLCILDLFFIVWIFRSLSKTIRDLKARRQTAK 224 (295)
T ss_pred HHHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888887766665442 2467899999999999999999999999999999999876
No 3
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms]
Probab=99.88 E-value=3.3e-24 Score=213.07 Aligned_cols=216 Identities=19% Similarity=0.305 Sum_probs=184.1
Q ss_pred ceeEEeCCCceEEEEEEEeCCCCCceEEEEEEEEEC---CCC---CCCccccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015641 175 SEEVEIERTGMYYLYFMYCDPQLKGTMIKGRTVWKN---PDG---YLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLW 248 (403)
Q Consensus 175 ~~~y~I~~tG~Y~v~~~~C~~~~~~~~~~g~v~f~N---pyG---yLpa~~~pll~fY~~m~i~Y~vl~~~W~~~~~k~r 248 (403)
...|+++..|.|.++++||.|. ...++.++++..| |.| ||||++.+++..|..|+++|+..+++|.+.+++++
T Consensus 123 ~~~~~~kd~~~y~l~f~nc~~~-~~~sm~V~~~~~~~~~p~g~~dyl~ag~~~Lp~ly~~~sl~Yl~~~v~w~~l~~~sk 201 (440)
T KOG2569|consen 123 SHHYPLKDPGQYSLFFANCVPE-TKGSMVVRVEMYNLLEPNGSRDYLSAGETSLPRLYFDFSLLYLDFLVFWCYLLKQSK 201 (440)
T ss_pred eEEecCCCCceEEEEEeecccc-ccceEEEEEEeeeccCCCCcccccccccccCchhHHHHHHHHHHhhhheeeeEeech
Confidence 6789999999999999999875 6678888888876 677 99999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccceeeeccCceeee
Q 015641 249 KDIIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFK 328 (403)
Q Consensus 249 kdll~Iq~~I~avi~l~~le~~~~~~~y~~~N~~G~~~~~~~v~~~il~a~k~tls~~LlLlVsmGyGVVkp~Lg~~~~k 328 (403)
+.+++||.+|.++++++.+..++...+|+++.++| .++||.+..+|++++|+.+.|.++.+++.||+++||.|.+++||
T Consensus 202 ~~v~rIh~lma~lV~lKsl~l~~~al~k~~~sk~g-~~~gw~vl~yI~~~lkg~llf~tivligTgwSflk~~l~dkekk 280 (440)
T KOG2569|consen 202 SVVYRIHDLMAVLVFLKSLSLICHALNKHYVSKTG-TVHGWAVLFYIFHFLKGVLLFTTIVLIGTGWSFLKPKLQDKEKK 280 (440)
T ss_pred HHHHHHHHHHHHHHhHcchHHHhhccceEEEEecC-ceeeeeehhhHHHHHhhhhheeEEEeeccCceeechhhccccce
Confidence 99999999999999999999999999999999999 58999999999999999999999999999999999999999999
Q ss_pred EeeehhHHHHHHHHHHHHhhccCCCCCCCc------e-eeehhhHHHHHHHHH--HHHHHHHHHH----------HHHHH
Q 015641 329 VIFLGLVYFVASEALEMFENLGNINDFSGK------A-KLFFVLPVTVLDVCF--ILWIFSSLSR----------TLEKL 389 (403)
Q Consensus 329 v~~l~~~yfv~s~~~~v~~~~~~~~d~s~~------~-~l~~~lPla~~~~~f--~~WIf~SL~~----------T~~~L 389 (403)
+++..+.--++.-+..++ ++|+.+. | .++.+..+-||.++. ++|..++|+. .+.+|
T Consensus 281 v~miviplqvlania~Iv-----~dEte~~~q~~~tw~~if~lvd~~cc~ai~fpIvwSi~~L~E~s~tDgkaa~nl~kL 355 (440)
T KOG2569|consen 281 VLMIVIPLQVLANIASIV-----TDETEPLTQDWVTWNQIFLLVDLKCCCAILFPIVWSIRHLRETSKTDGKAAANLIKL 355 (440)
T ss_pred EEEEEecHHHHHHhHhee-----ecCCCcchhhhhhhhheeeeecceeeeEEeeeeeeehhhhhhccCCcchhhcCcccc
Confidence 999876633332222221 2333221 1 345555666666654 8999999884 46799
Q ss_pred Hhhcceec
Q 015641 390 QVMFCVML 397 (403)
Q Consensus 390 ~~rrq~~~ 397 (403)
++.||+++
T Consensus 356 ~lfrqfyi 363 (440)
T KOG2569|consen 356 PLFRQFYI 363 (440)
T ss_pred hHHHHHHh
Confidence 99999875
No 4
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=99.18 E-value=1.1e-09 Score=106.42 Aligned_cols=199 Identities=18% Similarity=0.207 Sum_probs=149.0
Q ss_pred eEEEEEEEEECCC----CCCCccccchhHHHHHHHHHHHHHHHHHHHH--HHhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 015641 200 TMIKGRTVWKNPD----GYLPGKMAPLMTFYGLMSLAYLVLGLAWFLR--FVQLWKDIIQLHYYITGVIALGMCEVAVWY 273 (403)
Q Consensus 200 ~~~~g~v~f~Npy----GyLpa~~~pll~fY~~m~i~Y~vl~~~W~~~--~~k~rkdll~Iq~~I~avi~l~~le~~~~~ 273 (403)
++++=++++.|+. -++|++|...+++|.++.++|.++.+.-... ..+.|+...++.+++++.+++..+..++..
T Consensus 2 ~~~~y~i~l~N~~~~~~~hfS~de~gi~~~~~~~~~~y~vl~~~~~~~~~~l~~~~~~h~~~~l~~~~l~l~~~s~~l~~ 81 (257)
T PF10192_consen 2 LKIEYEIWLTNGGDFWTSHFSADEQGILEIYLLFLLLYIVLSIISIYSIQSLKKRGLMHPVYKLFSAALLLQFLSLLLNL 81 (257)
T ss_pred CceEEEEEEEeCCCccccccChhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778899996 5999999999999999999999988885544 355677789999999999999988888866
Q ss_pred HHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccceeeeccCcee-eeEeeehhHHHHHHHHHHHHhhccCC
Q 015641 274 FEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLT-FKVIFLGLVYFVASEALEMFENLGNI 352 (403)
Q Consensus 274 ~~y~~~N~~G~~~~~~~v~~~il~a~k~tls~~LlLlVsmGyGVVkp~Lg~~~-~kv~~l~~~yfv~s~~~~v~~~~~~~ 352 (403)
..|.....+|.......+...++.++-+.+...+++++|.||.+.|+++.... .+...+.++|.++..+..+.++...
T Consensus 82 ih~~~ya~nG~G~~~l~~~g~i~~~~s~~~~~lLLllla~GwTi~~~~~s~~~~~~~~~~~~~~~~~~~~l~i~~~~~~- 160 (257)
T PF10192_consen 82 IHYIVYAYNGVGIPFLKVLGQIFDILSQILFLLLLLLLAKGWTITRSRLSQSNSVKLIVFIILYVVLQVILFIWENRFY- 160 (257)
T ss_pred HHHHHHHccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 66665556666666889999999999999999999999999999999998542 3444556666666665555522211
Q ss_pred CCCCCc---eeeehhhHHHHHHHHHHHHHHHHHHHHH--HHHHhhcceeccc
Q 015641 353 NDFSGK---AKLFFVLPVTVLDVCFILWIFSSLSRTL--EKLQVMFCVMLSF 399 (403)
Q Consensus 353 ~d~s~~---~~l~~~lPla~~~~~f~~WIf~SL~~T~--~~L~~rrq~~~~~ 399 (403)
.|.... ..-..-.++.++-.+...|-..++.+|+ ++=.++|++...|
T Consensus 161 ~d~~~~~~~y~s~pGy~li~lri~~~~~F~~~~~~t~~~~~~~~k~~Fy~~f 212 (257)
T PF10192_consen 161 FDPHSYLYFYDSWPGYILIALRIVLAIWFIYGLYQTISKEKDPEKRKFYLPF 212 (257)
T ss_pred CCcccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 222111 1223445566677788889999999998 6666677766554
No 5
>KOG4290 consensus Predicted membrane protein [Function unknown]
Probab=97.47 E-value=0.0052 Score=62.41 Aligned_cols=171 Identities=15% Similarity=0.116 Sum_probs=111.0
Q ss_pred CC-CCccccchhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHH
Q 015641 213 GY-LPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITL 291 (403)
Q Consensus 213 Gy-Lpa~~~pll~fY~~m~i~Y~vl~~~W~~~~~k~rkdll~Iq~~I~avi~l~~le~~~~~~~y~~~N~~G~~~~~~~v 291 (403)
+| .+++|-.+.-+|..|.++|+++.+.-....+ |+..|.|...+.++....+...+.-+++..+-.+|..-.....
T Consensus 160 t~~fS~deqnlie~fll~llvY~vL~~iq~~av~---rkm~P~~~il~vlvtm~lv~~~licanllhfa~dG~Gep~~~~ 236 (429)
T KOG4290|consen 160 TLPFSLDEQNLIEAFLLMLLVYMVLVLIQGLAVT---RKMLPSWLILLVLVTMFLVQAGLICANLLHFAKDGFGEPKFFD 236 (429)
T ss_pred ccceeeccchHHHHHHHHHHHHHHHHHHHHHHHh---cccCchHhHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeecC
Confidence 45 8889999999999999999999998887766 5668888888888777777666655555555445543333455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccceeeeccCceeeeEeeehhHHHHHH-HHHHHHhhc---cCCCCC--CCceeeehhh
Q 015641 292 WAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLVYFVAS-EALEMFENL---GNINDF--SGKAKLFFVL 365 (403)
Q Consensus 292 ~~~il~a~k~tls~~LlLlVsmGyGVVkp~Lg~~~~kv~~l~~~yfv~s-~~~~v~~~~---~~~~d~--s~~~~l~~~l 365 (403)
.+.++.-...+-...|++..++||-|+|+.-... +++....-++|... .++..-+.. ....|. -..|. -.
T Consensus 237 aaEvldisS~~~~~lLLi~LakGW~i~r~~~s~~-~wds~m~wvf~~~f~~vL~~W~~tev~dv~hd~d~y~nwp---G~ 312 (429)
T KOG4290|consen 237 AAEVLDISSSLPAYLLLIWLAKGWVIFRVAASMS-RWDSPMKWVFFTSFVFVLTPWFWTEVIDVMHDNDCYNNWP---GE 312 (429)
T ss_pred HHHHHHHHhhHHHHHHHHHHhccceEEeehhhcc-ccccchhhhhhhhhhhheeehhhcCceeeeechhhhhccc---hH
Confidence 6788888888888999999999999999876642 22222211112111 111111110 001111 11222 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015641 366 PVTVLDVCFILWIFSSLSRTLEKLQ 390 (403)
Q Consensus 366 Pla~~~~~f~~WIf~SL~~T~~~L~ 390 (403)
-+-+++.++-+|-...|.++++.=+
T Consensus 313 ~viilRii~a~wflielr~~ik~Eh 337 (429)
T KOG4290|consen 313 VVIILRIIVAFWFLIELRVPIKLEH 337 (429)
T ss_pred HHHHHHHHHHHHHHHHeeeehhhhh
Confidence 3457899999999999987776433
No 6
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms]
Probab=70.59 E-value=7.3 Score=40.52 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=63.4
Q ss_pred eEEeCCCceE-EEEEEEeCCC-CC----ceEEEEEEEEEC--------CCCCCCccccchhHHHHHHHHHHHHHHHHHHH
Q 015641 177 EVEIERTGMY-YLYFMYCDPQ-LK----GTMIKGRTVWKN--------PDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFL 242 (403)
Q Consensus 177 ~y~I~~tG~Y-~v~~~~C~~~-~~----~~~~~g~v~f~N--------pyGyLpa~~~pll~fY~~m~i~Y~vl~~~W~~ 242 (403)
+..+++||-| ..++.-|.-- .. --.+.-+++|.= ++|++.+.+.|++.|+-.+.++..-+.+.|+.
T Consensus 296 ~Iv~dEte~~~q~~~tw~~if~lvd~~cc~ai~fpIvwSi~~L~E~s~tDgkaa~nl~kL~lfrqfyi~vi~yiyftrIv 375 (440)
T KOG2569|consen 296 SIVTDETEPLTQDWVTWNQIFLLVDLKCCCAILFPIVWSIRHLRETSKTDGKAAANLIKLPLFRQFYIVVIGYIYFTRIV 375 (440)
T ss_pred heeecCCCcchhhhhhhhheeeeecceeeeEEeeeeeeehhhhhhccCCcchhhcCcccchHHHHHHhhhhhhhhhhhhh
Confidence 4556666544 4554444210 00 124556788887 89999999999999999999988889999999
Q ss_pred HHHhhchhhHHHHHHHHHH
Q 015641 243 RFVQLWKDIIQLHYYITGV 261 (403)
Q Consensus 243 ~~~k~rkdll~Iq~~I~av 261 (403)
.+.+.+.+..++|+..-+.
T Consensus 376 v~~l~~~~~fky~W~~~~a 394 (440)
T KOG2569|consen 376 VFALKTIAVFKYQWLSFAA 394 (440)
T ss_pred hhhhhhccceeeeeHHHHH
Confidence 9999999999999877443
No 7
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=59.77 E-value=50 Score=35.01 Aligned_cols=84 Identities=17% Similarity=0.226 Sum_probs=46.8
Q ss_pred ceeEEeCCCceEEEEEEEeCCCC------------CceEEEEEEEEECC-CCCCCccccchhHHHHHHHHHHHHHHHHHH
Q 015641 175 SEEVEIERTGMYYLYFMYCDPQL------------KGTMIKGRTVWKNP-DGYLPGKMAPLMTFYGLMSLAYLVLGLAWF 241 (403)
Q Consensus 175 ~~~y~I~~tG~Y~v~~~~C~~~~------------~~~~~~g~v~f~Np-yGyLpa~~~pll~fY~~m~i~Y~vl~~~W~ 241 (403)
|.+.+|+++|.-.-+-.+--... ....-...|+|.+| +.|.-.. .-.=|++|.|+-..++ +++
T Consensus 239 P~~r~i~~~GF~A~W~v~~l~r~~~q~~~~~~~~~~~~~~~~gV~l~~Pvd~Y~~~~---Ra~KYgiLFI~LTF~~-ffl 314 (430)
T PF06123_consen 239 PEEREITDSGFSAQWKVSHLARNYPQQWASDDNCPDLSASAFGVDLIEPVDHYQKSE---RAVKYGILFIGLTFLA-FFL 314 (430)
T ss_pred CCCCccCCCCceeEeeehhhccchhhHhhhcccCcccccCceeEEEeccccHHHHHH---HHHHHHHHHHHHHHHH-HHH
Confidence 77889999998876654321100 01122345666666 2333222 2335777776644433 344
Q ss_pred HHHHhhchhhHHHHHHHHHHHH
Q 015641 242 LRFVQLWKDIIQLHYYITGVIA 263 (403)
Q Consensus 242 ~~~~k~rkdll~Iq~~I~avi~ 263 (403)
+-..+ ++.+.|+||.+.++-.
T Consensus 315 fE~~~-~~~iHpiQY~LVGlAl 335 (430)
T PF06123_consen 315 FELLS-KLRIHPIQYLLVGLAL 335 (430)
T ss_pred HHHHh-cCcccHHHHHHHHHHH
Confidence 44443 4679999999866533
No 8
>PF03040 CemA: CemA family; InterPro: IPR004282 Members of this family are probable integral membrane proteins. Their molecular function is unknown. CemA proteins are found in the inner envelope membrane of chloroplasts but not in the thylakoid membrane []. A cyanobacterial member of this family (proton extrusion protein PcxA) is involved in light-induced Na(+)-dependent proton extrusion and has been implicated in CO2 transport, but is probably not a CO2 transporter itself [].; GO: 0016021 integral to membrane
Probab=58.12 E-value=6.8 Score=37.96 Aligned_cols=39 Identities=31% Similarity=0.552 Sum_probs=27.5
Q ss_pred HHhhccCCCCCCCceeeehhhHHHHHHHHHHHHHHHHHHH
Q 015641 345 MFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSR 384 (403)
Q Consensus 345 v~~~~~~~~d~s~~~~l~~~lPla~~~~~f~~WIf~SL~~ 384 (403)
+.++.|-.++......+...+|| ++||+|=.|||+-|+|
T Consensus 178 ~~~hfG~~~n~~~i~~fvatfPV-iLDt~fKyWIFryLnr 216 (230)
T PF03040_consen 178 ILEHFGLPENEQFISLFVATFPV-ILDTIFKYWIFRYLNR 216 (230)
T ss_pred HHHhcCCCcccchhhhhhhhhhH-HHHHHHHHhhhcccCC
Confidence 45566544433333456678899 7999999999998874
No 9
>CHL00043 cemA envelope membrane protein
Probab=57.27 E-value=7.1 Score=38.51 Aligned_cols=39 Identities=31% Similarity=0.588 Sum_probs=26.6
Q ss_pred HHhhccCCCCCCCceeeehhhHHHHHHHHHHHHHHHHHHH
Q 015641 345 MFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSR 384 (403)
Q Consensus 345 v~~~~~~~~d~s~~~~l~~~lPla~~~~~f~~WIf~SL~~ 384 (403)
+.++.|-.++-.-...+...+|| ++||+|=+|||+-|+|
T Consensus 209 i~~hfGl~~n~~~I~lfVatfPV-iLDtiFKYWIFRyLNR 247 (261)
T CHL00043 209 IYKHFGFAHNDQIISLLVSTFPV-ILDTIFKYWIFRYLNR 247 (261)
T ss_pred HHHhcCCCcccchHHHHHHhhhH-HHHHHHHHHHHhhccC
Confidence 45555544332222345667899 7999999999998874
No 10
>PF09437 Pombe_5TM: Pombe specific 5TM protein; InterPro: IPR018291 This entry represents a group of proteins containing five transmembrane regions. These proteins are found exclusively in Schizosaccharomyces pombe (Fission yeast).
Probab=50.94 E-value=3.8 Score=38.14 Aligned_cols=135 Identities=17% Similarity=0.131 Sum_probs=76.5
Q ss_pred eeEEeCCCceEEEEEEEeCCCCC--ceEEEEEE---EEECC-----CCCCCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 015641 176 EEVEIERTGMYYLYFMYCDPQLK--GTMIKGRT---VWKNP-----DGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFV 245 (403)
Q Consensus 176 ~~y~I~~tG~Y~v~~~~C~~~~~--~~~~~g~v---~f~Np-----yGyLpa~~~pll~fY~~m~i~Y~vl~~~W~~~~~ 245 (403)
...-|++||-|||..-+-.-+.. +.++.|-. .-.|. ..|++..+.+-. ++++.+|++-|.
T Consensus 36 ~~i~I~~T~sYCvAar~mtmdgaefnldlmgysvsedqinndeigiwnyisvaemggv----------llflsywiwtcl 105 (256)
T PF09437_consen 36 KTILINETGSYCVAARPMTMDGAEFNLDLMGYSVSEDQINNDEIGIWNYISVAEMGGV----------LLFLSYWIWTCL 105 (256)
T ss_pred EEEEecCccceEEEEeeeecccceecccccccccchhhcCccceeeeeEEEhhhcCce----------eehhHHHHHHHH
Confidence 45678999999998754321111 12222211 11122 236666655422 134567999999
Q ss_pred hhchhhHHHHHHHHHHHHHHHH-HHHHH-HHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccceeeec
Q 015641 246 QLWKDIIQLHYYITGVIALGMC-EVAVW-YFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPT 321 (403)
Q Consensus 246 k~rkdll~Iq~~I~avi~l~~l-e~~~~-~~~y~~~N~~G~~~~~~~v~~~il~a~k~tls~~LlLlVsmGyGVVkp~ 321 (403)
.+.|-++|-|+-+-.-|++..+ .++-- .-+|. +...-..-.-..-...+++.+|.-+-|+.++.-++|.|+.|..
T Consensus 106 hfskiifpaqkviClYIflfalnqtlqecieeyv-FssecikyrqFysvyeiidFlRTnfyrlfviycalgfgitRTv 182 (256)
T PF09437_consen 106 HFSKIIFPAQKVICLYIFLFALNQTLQECIEEYV-FSSECIKYRQFYSVYEIIDFLRTNFYRLFVIYCALGFGITRTV 182 (256)
T ss_pred hHhheecccceEEEEEeehhhcChhHHHHHHHhe-eeeEEEEecccccHHHHHHHHHhhhhhhheeeecccccceeee
Confidence 9999999999876555543322 22221 11221 0000000000111346889999999999999999999998854
No 11
>PRK02507 proton extrusion protein PcxA; Provisional
Probab=50.86 E-value=11 Score=39.61 Aligned_cols=40 Identities=28% Similarity=0.460 Sum_probs=26.9
Q ss_pred HHHhhccCCCCCCCceeeehhhHHHHHHHHHHHHHHHHHHH
Q 015641 344 EMFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSR 384 (403)
Q Consensus 344 ~v~~~~~~~~d~s~~~~l~~~lPla~~~~~f~~WIf~SL~~ 384 (403)
.+.+|.|-.++-.-...+...+|| ++||+|=+|||+-|++
T Consensus 369 ~i~~HfGl~~n~~~I~lFVaTfPV-iLDTiFKYWIFRyLNR 408 (422)
T PRK02507 369 GIARHFGLPENRNFIFLFIATFPV-ILDTIFKYWIFRYLNR 408 (422)
T ss_pred HHHHhcCCCcccchHHHHHhhhhH-HHHHHHHHHHHhhccC
Confidence 355565544332222345667899 7999999999998873
No 12
>PF06664 MIG-14_Wnt-bd: Wnt-binding factor required for Wnt secretion
Probab=50.69 E-value=2.6e+02 Score=27.60 Aligned_cols=140 Identities=13% Similarity=0.111 Sum_probs=68.0
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHH-H-HHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccce--eeecc
Q 015641 247 LWKDIIQLHYYITGVIALGMCEVA-V-WYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGV--VRPTL 322 (403)
Q Consensus 247 ~rkdll~Iq~~I~avi~l~~le~~-~-~~~~y~~~N~~G~~~~~~~v~~~il~a~k~tls~~LlLlVsmGyGV--Vkp~L 322 (403)
++++-..-|+|+.+++++..+-.- + +...+.+ +....++-.++....-+..++-.|++.-+-.. -|.++
T Consensus 78 ~~~~w~~EQk~~~~Ll~~lil~n~P~~~l~~~~~-------~~~~~~l~~i~q~~F~~~Ll~FwL~~~~~~r~~~~r~~~ 150 (298)
T PF06664_consen 78 SRRDWLLEQKWTFALLILLILYNNPFFWLSFFFN-------SPFFLLLDDIFQSIFYAYLLLFWLVFFDSLRMQNERKNL 150 (298)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhChHHHHHHHhc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCce
Confidence 357778889999999887765432 2 3222221 11233333444444444444444444433332 11111
Q ss_pred CceeeeEeeehhHHHHHHHHHHHHhhccCCCCC--------CCceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015641 323 GGLTFKVIFLGLVYFVASEALEMFENLGNINDF--------SGKAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQVMFC 394 (403)
Q Consensus 323 g~~~~kv~~l~~~yfv~s~~~~v~~~~~~~~d~--------s~~~~l~~~lPla~~~~~f~~WIf~SL~~T~~~L~~rrq 394 (403)
.---.|+.+ .++.+++..+....+......|+ .+.......+-++...+ +++|+....-+..++++.+|.
T Consensus 151 ~~y~~ki~~-v~~~~~~~~i~~~~~~~~~~~dP~~~~~~~~~~~~~~~~~~~l~~i~~-Y~l~ll~li~rs~~~i~~~~~ 228 (298)
T PF06664_consen 151 KFYWPKIIL-VGLFWLFLFIFDIWERGNQLKDPFYSIWVDDPGFNIAKAFIILAGICA-YFLYLLFLIIRSFSEIRNKRY 228 (298)
T ss_pred EEEhHHHHH-HHHHHHHHHHHHHHHHHHHhcCCcccCccCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccH
Confidence 111123333 33334444444443333222221 11112223333333333 888999999999999998886
Q ss_pred e
Q 015641 395 V 395 (403)
Q Consensus 395 ~ 395 (403)
.
T Consensus 229 ~ 229 (298)
T PF06664_consen 229 F 229 (298)
T ss_pred H
Confidence 5
No 13
>PF14089 KbaA: KinB-signalling pathway activation in sporulation
Probab=40.53 E-value=2.6e+02 Score=26.23 Aligned_cols=61 Identities=18% Similarity=0.299 Sum_probs=31.4
Q ss_pred HHHHHHhccceeeeccCceeeeEeeehhHHHHHHHHHHHHhhccCCCCCCCceeeehhhHHHHHHH
Q 015641 307 LLLAVSMGYGVVRPTLGGLTFKVIFLGLVYFVASEALEMFENLGNINDFSGKAKLFFVLPVTVLDV 372 (403)
Q Consensus 307 LlLlVsmGyGVVkp~Lg~~~~kv~~l~~~yfv~s~~~~v~~~~~~~~d~s~~~~l~~~lPla~~~~ 372 (403)
++|+++.--..+|-+... ++..+=++.+.+...+.|..-.+. .+|. .+..+.++|+-+|++
T Consensus 110 ~ll~~~lvvA~~K~K~Tn--k~AfIPaLFfMvVvT~lEw~PaL~-~n~~--~~l~~ml~pLl~CNA 170 (180)
T PF14089_consen 110 FLLIVALVVAYIKAKQTN--KSAFIPALFFMVVVTTLEWVPALR-VNDE--NWLYLMLFPLLACNA 170 (180)
T ss_pred HHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHh-cCCc--ccHHHHHHHHHHHHH
Confidence 344555555555555443 333333334444444444444432 2332 366678899988876
No 14
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=34.92 E-value=3e+02 Score=23.81 Aligned_cols=50 Identities=14% Similarity=0.253 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHH
Q 015641 251 IIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVK 300 (403)
Q Consensus 251 ll~Iq~~I~avi~l~~le~~~~~~~y~~~N~~G~~~~~~~v~~~il~a~k 300 (403)
.++-..-+..++++..++..++..++.+.|.+|...-...++..++-++-
T Consensus 50 ~l~~~~~~~~I~~lAvvQi~VqL~yFLHm~~k~~~~~~~~if~gi~va~~ 99 (110)
T TIGR02908 50 EIDKWFVIPFILLLAAVQVAFQLYYFMHMKDKGHEVPAQFIYGGVFVTML 99 (110)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHheeeCCCccchHHHHHHHHHHHHHH
Confidence 34566667778888899999999999999976663323333444444433
No 15
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=29.70 E-value=76 Score=25.60 Aligned_cols=37 Identities=14% Similarity=0.320 Sum_probs=22.3
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecccCC
Q 015641 362 FFVLPVTVLDVCFILWIFSSLSRTLEKLQVMFCVMLSFHP 401 (403)
Q Consensus 362 ~~~lPla~~~~~f~~WIf~SL~~T~~~L~~rrq~~~~~~~ 401 (403)
..++|+.++..+||+|.++.-.+-.| +++++..+..|
T Consensus 3 ~~li~lv~~~~i~yf~~~rpqkk~~k---~~~~m~~~Lk~ 39 (82)
T PF02699_consen 3 SMLIPLVIIFVIFYFLMIRPQKKQQK---EHQEMLASLKP 39 (82)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHH---HHTTGGG----
T ss_pred HHHHHHHHHHHHHhhheecHHHHHHH---HHHHHHHcCCC
Confidence 34678888888888888776664444 55555544443
No 16
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=29.12 E-value=4e+02 Score=23.49 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=42.8
Q ss_pred EEEECCCCCCCcccc-chhHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 015641 206 TVWKNPDGYLPGKMA-PLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVAVW 272 (403)
Q Consensus 206 v~f~NpyGyLpa~~~-pll~fY~~m~i~Y~vl~~~W~~~~~k~rkdll~Iq~~I~avi~l~~le~~~~ 272 (403)
.+.+|.-|-+-+.-. -.....|..+.+..++.+.|...+.++++.-.+...++..++.+..+..++.
T Consensus 41 ~~~~N~~G~~Ga~~a~~l~~~fG~~a~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 108 (171)
T PF13491_consen 41 AEVHNLMGILGAYLADFLFQLFGLGAYLLPLLLIVWGIRLFRRRSLRRRIRRWLGLLLLLLSLSGLLS 108 (171)
T ss_pred CCCcCCCChHhHHHHHhHHhccchHHHHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHHHHHHH
Confidence 345677664433311 1334667778888888888998888887655556666666666555555554
No 17
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=29.03 E-value=2e+02 Score=26.04 Aligned_cols=52 Identities=13% Similarity=0.315 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhh----HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 015641 228 LMSLAYLVLGLAWFLRFVQLWKDI----IQLHYYITGVIALGMCEVAVWYFEYANFNSTGS 284 (403)
Q Consensus 228 ~m~i~Y~vl~~~W~~~~~k~rkdl----l~Iq~~I~avi~l~~le~~~~~~~y~~~N~~G~ 284 (403)
++.++-++++++-++.+.|||++- |.|-.. ++.++-....|-+|...+....
T Consensus 21 ~~i~~ll~~l~~~~~~Y~r~r~~tKyRDL~II~~-----L~ll~l~giq~~~y~~~~~~~~ 76 (149)
T PF11694_consen 21 ILIIILLLVLIFFFIKYLRNRLDTKYRDLSIIAL-----LLLLLLIGIQYSDYQQNQNQHS 76 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHH-----HHHHHHHHHHHHHHHHHhhhHh
Confidence 334444455555666677887552 222222 2222233347888887765544
No 18
>PRK06265 cobalt transport protein CbiM; Validated
Probab=28.66 E-value=3.6e+02 Score=25.22 Aligned_cols=24 Identities=25% Similarity=0.366 Sum_probs=15.3
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHH
Q 015641 362 FFVLPVTVLDVCFILWIFSSLSRT 385 (403)
Q Consensus 362 ~~~lPla~~~~~f~~WIf~SL~~T 385 (403)
..-+|+++.+.++=..+.+-+.+.
T Consensus 169 ~~~~~l~~~Eg~ltg~~v~~l~~~ 192 (199)
T PRK06265 169 LAHLPLMVIEGIITAFAVSFLARV 192 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445677777777766666655544
No 19
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=26.86 E-value=53 Score=26.79 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=21.0
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015641 362 FFVLPVTVLDVCFILWIFSSLSRTLEKLQVM 392 (403)
Q Consensus 362 ~~~lPla~~~~~f~~WIf~SL~~T~~~L~~r 392 (403)
..++|++++..+||+|+++.-.+--++.++.
T Consensus 4 ~~l~~~vv~~~i~yf~~~rpqkK~~k~~~~m 34 (84)
T TIGR00739 4 TTLLPLVLIFLIFYFLIIRPQRKRRKAHKKL 34 (84)
T ss_pred HHHHHHHHHHHHHHHheechHHHHHHHHHHH
Confidence 3467888888888888887665555444433
No 20
>PF08636 Pkr1: ER protein Pkr1; InterPro: IPR013945 Pkr1 has been identified as an ER protein of unknown function.
Probab=26.78 E-value=3.4e+02 Score=21.88 Aligned_cols=48 Identities=17% Similarity=0.404 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015641 223 MTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVAVWYF 274 (403)
Q Consensus 223 l~fY~~m~i~Y~vl~~~W~~~~~k~rkdll~Iq~~I~avi~l~~le~~~~~~ 274 (403)
+.+-..+-+.++++.+.++.+.+--+ .+|.+++.++..++.-.+-|+.
T Consensus 19 p~li~a~n~sF~~L~~~l~~Ll~~t~----niHfivL~~l~~~Lw~Sv~WFi 66 (75)
T PF08636_consen 19 PTLIIATNVSFAALFLVLLALLFLTY----NIHFIVLSFLALGLWASVNWFI 66 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777778888888777766544 8999999999999887777764
No 21
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=25.47 E-value=77 Score=24.34 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=15.6
Q ss_pred eeehhhHHHHHHHHHHHHHH
Q 015641 360 KLFFVLPVTVLDVCFILWIF 379 (403)
Q Consensus 360 ~l~~~lPla~~~~~f~~WIf 379 (403)
.++.++|+|++..+..+|.|
T Consensus 3 ~l~~Lipvsi~l~~v~l~~f 22 (58)
T COG3197 3 ILYILIPVSILLGAVGLGAF 22 (58)
T ss_pred eeeeHHHHHHHHHHHHHHHH
Confidence 46789999999988765554
No 22
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=23.14 E-value=61 Score=24.19 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=16.6
Q ss_pred eeehhhHHHHHHHHHHHHHHH
Q 015641 360 KLFFVLPVTVLDVCFILWIFS 380 (403)
Q Consensus 360 ~l~~~lPla~~~~~f~~WIf~ 380 (403)
.++++||++++..++.+|.|-
T Consensus 3 il~~LIpiSl~l~~~~l~~f~ 23 (51)
T TIGR00847 3 ILTILIPISLLLGGVGLVAFL 23 (51)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999988777653
No 23
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=22.71 E-value=26 Score=26.06 Aligned_cols=13 Identities=23% Similarity=0.491 Sum_probs=10.8
Q ss_pred hhcceecccCCCC
Q 015641 391 VMFCVMLSFHPDR 403 (403)
Q Consensus 391 ~rrq~~~~~~~~~ 403 (403)
.-|++++.+||||
T Consensus 20 ~y~~l~~~~HPD~ 32 (64)
T PF00226_consen 20 AYRRLSKQYHPDK 32 (64)
T ss_dssp HHHHHHHHTSTTT
T ss_pred HHHhhhhcccccc
Confidence 4578889999997
No 24
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=22.24 E-value=3.6e+02 Score=28.77 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhccceeeeccCceeeeEeeehhHH
Q 015641 303 VSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLVY 336 (403)
Q Consensus 303 ls~~LlLlVsmGyGVVkp~Lg~~~~kv~~l~~~y 336 (403)
+.|+++|+.++|+||.--.=.+-..-+.+-|=.|
T Consensus 4 vlfflilV~alg~gfawLadrPG~lsl~w~G~~~ 37 (531)
T COG3898 4 VLFFLILVAALGFGFAWLADRPGELSLIWQGQQY 37 (531)
T ss_pred HHHHHHHHHHHHhHHHHHcCCCcceeEEecchhH
Confidence 4577788888888876433333233344444443
No 25
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=22.09 E-value=25 Score=25.06 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=12.6
Q ss_pred HHHH-HhhcceecccCCCC
Q 015641 386 LEKL-QVMFCVMLSFHPDR 403 (403)
Q Consensus 386 ~~~L-~~rrq~~~~~~~~~ 403 (403)
.+++ +..|+.++.+|||+
T Consensus 14 ~~~ik~~y~~l~~~~HPD~ 32 (55)
T cd06257 14 DEEIKKAYRKLALKYHPDK 32 (55)
T ss_pred HHHHHHHHHHHHHHHCcCC
Confidence 3444 34577888999996
No 26
>PRK10263 DNA translocase FtsK; Provisional
Probab=21.92 E-value=9e+02 Score=29.61 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=21.0
Q ss_pred EECCCCCCCccccc-hhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015641 208 WKNPDGYLPGKMAP-LMTFYGLMSLAYLVLGLAWFLRFVQLW 248 (403)
Q Consensus 208 f~NpyGyLpa~~~p-ll~fY~~m~i~Y~vl~~~W~~~~~k~r 248 (403)
.+|.-|-+.+--.- ++.++|+++.+..++++++.+.+++++
T Consensus 60 V~Nl~GiVGA~LAD~L~~LFGl~AYLLP~LL~~~a~~l~R~r 101 (1355)
T PRK10263 60 IHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQ 101 (1355)
T ss_pred cccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 46777766554333 334555555555444444444445443
No 27
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=21.81 E-value=85 Score=22.77 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=16.1
Q ss_pred eeehhhHHHHHHHHHHHHHHH
Q 015641 360 KLFFVLPVTVLDVCFILWIFS 380 (403)
Q Consensus 360 ~l~~~lPla~~~~~f~~WIf~ 380 (403)
.++.++|++++..+..++.|-
T Consensus 2 ~l~~lip~sl~l~~~~l~~f~ 22 (45)
T PF03597_consen 2 ILYILIPVSLILGLIALAAFL 22 (45)
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 367889999999888666653
No 28
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=21.46 E-value=5.7e+02 Score=24.62 Aligned_cols=21 Identities=24% Similarity=0.146 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 015641 228 LMSLAYLVLGLAWFLRFVQLW 248 (403)
Q Consensus 228 ~m~i~Y~vl~~~W~~~~~k~r 248 (403)
+-.++|++++........+++
T Consensus 31 lSNl~fi~~al~gl~~~~~~~ 51 (262)
T PF05875_consen 31 LSNLAFIVAALYGLYLARRRG 51 (262)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 445556666655555555544
No 29
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=21.26 E-value=89 Score=26.64 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=23.2
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015641 361 LFFVLPVTVLDVCFILWIFSSLSRTLEKLQVMFC 394 (403)
Q Consensus 361 l~~~lPla~~~~~f~~WIf~SL~~T~~~L~~rrq 394 (403)
+..++|+.++..+||+++++.-.+-.++.++.++
T Consensus 18 ~~~ll~lvii~~i~yf~~~RpqkK~~k~~~~~~~ 51 (106)
T PRK05585 18 LSSLLPLVVFFAIFYFLIIRPQQKRQKEHKKMLS 51 (106)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4667788888888888887766665555544443
No 30
>KOG4320 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.89 E-value=8.2e+02 Score=24.18 Aligned_cols=33 Identities=15% Similarity=0.056 Sum_probs=25.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 015641 218 KMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKD 250 (403)
Q Consensus 218 ~~~pll~fY~~m~i~Y~vl~~~W~~~~~k~rkd 250 (403)
...|.-..|++|.=.-++++.+|.+.-+|+-++
T Consensus 44 ~y~Pesc~f~i~~Ni~~vll~l~~yvRYrQl~~ 76 (253)
T KOG4320|consen 44 TYIPESCLFGIMINIGAVLLALIIYVRYRQLLE 76 (253)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888899999888889999999876654333
No 31
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=20.56 E-value=3e+02 Score=27.87 Aligned_cols=50 Identities=20% Similarity=0.156 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015641 225 FYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVAVWYFE 275 (403)
Q Consensus 225 fY~~m~i~Y~vl~~~W~~~~~k~rkdll~Iq~~I~avi~l~~le~~~~~~~ 275 (403)
-|.+++.+|.+..+.=+-...|+.++.- +|.|...++.+......+.|.-
T Consensus 245 ~YllLt~lYTl~s~~~IQIa~r~~~~~~-~~~y~~~lV~~~i~sK~~vy~i 294 (299)
T PF05884_consen 245 SYLLLTALYTLASIAPIQIAFRNQTDID-MHLYQMLLVFLTIFSKCFVYGI 294 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCccc-hhHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777666665555566555555 7777777766666666665543
No 32
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=20.49 E-value=2.1e+02 Score=25.92 Aligned_cols=13 Identities=23% Similarity=0.532 Sum_probs=10.5
Q ss_pred CCCCCCcceEEEe
Q 015641 70 DKPLKGKSFIRFE 82 (403)
Q Consensus 70 ~~~g~~~s~I~f~ 82 (403)
+.+++.|||+.|+
T Consensus 20 ~~~~~~DpYVk~~ 32 (155)
T cd08690 20 WNPKDLDTYVKFE 32 (155)
T ss_pred cCCCCCCeEEEEE
Confidence 4577899999995
Done!