BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015642
(403 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449443528|ref|XP_004139529.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Cucumis sativus]
gi|449505551|ref|XP_004162505.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Cucumis sativus]
Length = 478
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/403 (79%), Positives = 365/403 (90%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQSLDEFLSN+NKGK VI+SLSPQSRASLA HFGISPL+VFKKLTTF KS+GVK+IF
Sbjct: 76 MLEKQSLDEFLSNLNKGKVVIVSLSPQSRASLAVHFGISPLKVFKKLTTFFKSMGVKAIF 135
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTSCSRDLTLIEACNEFIARY+ SQ+ ++E+ SS+PM+SSACPGWICYAEKQ GSYILP
Sbjct: 136 DTSCSRDLTLIEACNEFIARYRNSQQDNEEKCKSSVPMISSACPGWICYAEKQHGSYILP 195
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
YISSVKSPQQ IG+ +KHH+CQKLG R D++YHVTVMPCYDKKLEAAREDFVFQLDS +
Sbjct: 196 YISSVKSPQQMIGSIVKHHMCQKLGIRSDDVYHVTVMPCYDKKLEAAREDFVFQLDSANK 255
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
T E I EVDSVLT+GEVL+LIQ+K V+F++LEESPLD+MLTNV++EGHL+GV+GSS
Sbjct: 256 TLEAEAHRITEVDSVLTSGEVLELIQMKEVDFKSLEESPLDRMLTNVNEEGHLFGVSGSS 315
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
GGYAET+FRHAAK LFGK IEG LEFK IRNSDF+E+ LEVEGKTLLKFALCYGF+NLQN
Sbjct: 316 GGYAETIFRHAAKILFGKDIEGPLEFKLIRNSDFQELTLEVEGKTLLKFALCYGFRNLQN 375
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
+VRK+K KCDY F+E+MACPSGCLNGGGQIKPKPGQSPK+LI+ LE Y ENV++ DPF
Sbjct: 376 VVRKIKTGKCDYHFLEIMACPSGCLNGGGQIKPKPGQSPKDLIELLEAAYQENVLMRDPF 435
Query: 361 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
NP+V+ +Y EWLE+PGSEKAKKH+HTEYHPVVKSITAQLHNW
Sbjct: 436 DNPVVKEIYKEWLEEPGSEKAKKHLHTEYHPVVKSITAQLHNW 478
>gi|224139480|ref|XP_002323132.1| predicted protein [Populus trichocarpa]
gi|222867762|gb|EEF04893.1| predicted protein [Populus trichocarpa]
Length = 471
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/403 (79%), Positives = 371/403 (92%), Gaps = 2/403 (0%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQSLD+FLSNI+KGKA+I+SLSPQSRASLA +FGISPLQVFKKLTTF KSLGVK++F
Sbjct: 71 MLEKQSLDDFLSNIDKGKAIIVSLSPQSRASLAVYFGISPLQVFKKLTTFFKSLGVKAVF 130
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTS SRDLTLIE CNEF+ RYKQSQ +++E+SNS+LPMLSSACPGWICYAEKQLGSY+LP
Sbjct: 131 DTSSSRDLTLIETCNEFVNRYKQSQLNNNEKSNSALPMLSSACPGWICYAEKQLGSYVLP 190
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+ISSVKSPQQTIGATIKHHICQK+G RPDE+YHVTVMPCYDKKLEA R+DFVF++ ++E
Sbjct: 191 FISSVKSPQQTIGATIKHHICQKMGLRPDEVYHVTVMPCYDKKLEAVRDDFVFEV--EQE 248
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
GL I EVDSVLTTGEVLDLI+ KAV+FE L++SPLDKMLTNV +EG+LYGVAGSS
Sbjct: 249 DANKNGLRIAEVDSVLTTGEVLDLIKFKAVDFETLDDSPLDKMLTNVSEEGYLYGVAGSS 308
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
GGYA+TVFR+AA+ L+G+ IEG L FK++RN DFREV LEV+GK +LKFALCYGFQNLQN
Sbjct: 309 GGYADTVFRNAARMLYGREIEGPLAFKSLRNMDFREVTLEVDGKVVLKFALCYGFQNLQN 368
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
IVRKVK+ KCDY FVEVMACPSGCLNGGGQIKPKP QSPKEL+++LETIY+ENV++ DPF
Sbjct: 369 IVRKVKIGKCDYHFVEVMACPSGCLNGGGQIKPKPQQSPKELLQSLETIYMENVLIKDPF 428
Query: 361 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
+N LV+SLYDEWLE+PGSEKAK+H+HTEYHP+VKS+TAQLHNW
Sbjct: 429 ENLLVKSLYDEWLEKPGSEKAKRHMHTEYHPMVKSVTAQLHNW 471
>gi|224086530|ref|XP_002307904.1| predicted protein [Populus trichocarpa]
gi|222853880|gb|EEE91427.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/403 (79%), Positives = 368/403 (91%), Gaps = 2/403 (0%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQSLDEFLSNI+KGKA+I+SLSPQSRASLA +FGISPLQVFKKLTTF KSLGVK++F
Sbjct: 78 MLEKQSLDEFLSNIDKGKAIIVSLSPQSRASLAFYFGISPLQVFKKLTTFFKSLGVKAVF 137
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTSCSRDLTL+E CNEF+ RYKQSQ + DE+SN SLPMLSSACPGWICYAEKQLGSYILP
Sbjct: 138 DTSCSRDLTLVETCNEFLCRYKQSQLNIDEKSNPSLPMLSSACPGWICYAEKQLGSYILP 197
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
Y+SSVKSPQQTIGATIKHHICQK+G RPDE+YHVTVMPCYDKKLEAAR DFVF++ ++E
Sbjct: 198 YVSSVKSPQQTIGATIKHHICQKMGLRPDEVYHVTVMPCYDKKLEAARGDFVFEV--EQE 255
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
L I EVDSVLTTGEVLDLI+LKAV+ E L++SPLDKMLTNV +EG+LYGV GSS
Sbjct: 256 DANKNSLRITEVDSVLTTGEVLDLIKLKAVDIETLDDSPLDKMLTNVSEEGYLYGVPGSS 315
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
GGYAETV R+AA+ +FG+ IEG L F+++RN+DF EV LEV+GK +LKFALCYGFQNLQN
Sbjct: 316 GGYAETVLRYAARMVFGREIEGPLAFRSLRNNDFCEVTLEVDGKVVLKFALCYGFQNLQN 375
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
IVRKVKM +CDY FVE+MACPSGCLNGGGQIKPKP QSP+EL+++LETIY+EN+++ DPF
Sbjct: 376 IVRKVKMGRCDYHFVEIMACPSGCLNGGGQIKPKPQQSPRELLQSLETIYMENILVKDPF 435
Query: 361 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
+NPLV+SLYDEWL+QPGSEKAK+H+HTEYHPVVKS+TAQLHNW
Sbjct: 436 ENPLVKSLYDEWLDQPGSEKAKRHMHTEYHPVVKSVTAQLHNW 478
>gi|359496948|ref|XP_003635380.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like [Vitis
vinifera]
gi|297744923|emb|CBI38438.3| unnamed protein product [Vitis vinifera]
Length = 478
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/403 (77%), Positives = 370/403 (91%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQS+DEFL NINKGKAVI+SLSPQSRAS A HFG+SPLQV +KLTTF KSLGVK++F
Sbjct: 76 MLEKQSMDEFLFNINKGKAVIVSLSPQSRASFAIHFGLSPLQVLRKLTTFFKSLGVKAVF 135
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTSCSRDL+LIE+CN FI+RYKQ ++DE+ +SLPMLSSACPGWICYAEK LGSYILP
Sbjct: 136 DTSCSRDLSLIESCNAFISRYKQHHSTEDEKCKTSLPMLSSACPGWICYAEKTLGSYILP 195
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
YISSVKSPQQTIG TIK+++CQK+GFRPDE+YHV+VMPCYDKKLEAAR+DFVF++DS
Sbjct: 196 YISSVKSPQQTIGVTIKNYLCQKMGFRPDEVYHVSVMPCYDKKLEAARDDFVFEVDSPGG 255
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
+ + GL I EVDSVLT+GEVL+LIQLK+V+F+ LEESPLD++LTNV++EGHLYGV GSS
Sbjct: 256 VHENTGLRITEVDSVLTSGEVLELIQLKSVDFKNLEESPLDRLLTNVNEEGHLYGVQGSS 315
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
GGYA+T+FR+AAKTLFG+ ++G L+FKT+RNSDFREV LE+EG+T+LKFALCYGF+NLQN
Sbjct: 316 GGYADTIFRYAAKTLFGRELKGPLDFKTVRNSDFREVTLEIEGQTMLKFALCYGFRNLQN 375
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
IVRK+K+ KCDY F+EVMACPSGCLNGGGQIKPK GQS K+LI++LE IY+ENV++ADPF
Sbjct: 376 IVRKIKIGKCDYHFLEVMACPSGCLNGGGQIKPKAGQSAKDLIQSLEAIYMENVVVADPF 435
Query: 361 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
KNP+V+ LYDEWLEQPGSEKAK+ +HTEYHPVVKSIT+QLHNW
Sbjct: 436 KNPIVKGLYDEWLEQPGSEKAKRLIHTEYHPVVKSITSQLHNW 478
>gi|255563810|ref|XP_002522906.1| electron transporter, putative [Ricinus communis]
gi|223537891|gb|EEF39506.1| electron transporter, putative [Ricinus communis]
Length = 475
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/393 (80%), Positives = 359/393 (91%), Gaps = 1/393 (0%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQSLDEFLSNI+KGKAV+ISLSPQSRASLA HF ISP QVFKKLTTF KSLGVK++F
Sbjct: 72 MLEKQSLDEFLSNIDKGKAVVISLSPQSRASLAAHFDISPPQVFKKLTTFFKSLGVKAVF 131
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTS SRD+TLIE CNEFI RYKQSQ +DDERS S+LPMLSSACPGWICYAEKQLGSYILP
Sbjct: 132 DTSSSRDITLIETCNEFITRYKQSQSNDDERSKSALPMLSSACPGWICYAEKQLGSYILP 191
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
YIS VKSPQQ +GATIKH ICQK+G RPDE+YHVTVMPCYDKKLEA R+DFV +L+SQEE
Sbjct: 192 YISPVKSPQQIVGATIKHQICQKMGLRPDEVYHVTVMPCYDKKLEAVRDDFVIELESQEE 251
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
D + I EVDSVLT+GEVLDLI+LKAV+F ALEESPLD+M +NV++EGHLYGV+GSS
Sbjct: 252 N-GDSLVRIAEVDSVLTSGEVLDLIKLKAVDFPALEESPLDRMFSNVNEEGHLYGVSGSS 310
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
GGYAETVFR+A KTLFG I G L FKTIRN+DFREV LEV+G LLKFALCYGFQNLQN
Sbjct: 311 GGYAETVFRNATKTLFGIEINGPLTFKTIRNTDFREVTLEVDGHVLLKFALCYGFQNLQN 370
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
IVRK+KM+KCDY FVEVMACPSGCLNGGGQIKPKPGQSPK+L+++LETIY+ENV++ADPF
Sbjct: 371 IVRKIKMQKCDYHFVEVMACPSGCLNGGGQIKPKPGQSPKDLLQSLETIYMENVLVADPF 430
Query: 361 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVV 393
+NPL++SLYDEWLE+PGSEKAK+++HTEYHPVV
Sbjct: 431 ENPLIKSLYDEWLEEPGSEKAKRYLHTEYHPVV 463
>gi|356522067|ref|XP_003529671.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Glycine max]
Length = 474
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/403 (74%), Positives = 359/403 (89%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQSLDEFL+NIN GKAVI+SLSPQSRAS+A HFGISP+Q FKKLT F KSLGVK++F
Sbjct: 72 MLEKQSLDEFLNNINSGKAVIVSLSPQSRASIAVHFGISPIQAFKKLTRFFKSLGVKAVF 131
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTSCSRDLTL+E+C EFI RY+Q+Q DDERS SSLPM++SACPGWICYAEKQLGS++LP
Sbjct: 132 DTSCSRDLTLVESCVEFITRYRQNQLVDDERSKSSLPMIASACPGWICYAEKQLGSFVLP 191
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
YISSVKSPQQT+GA IK+++CQ+LG RP+E+YHVTVMPCYDKKLEAAR+DFVFQ +S E
Sbjct: 192 YISSVKSPQQTVGAIIKNYVCQELGLRPEEVYHVTVMPCYDKKLEAARDDFVFQFESHVE 251
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
E I EVDSVLTTGEVL+LIQ K V+F++LEE+PLDK+LTN+++EG+LYGV GSS
Sbjct: 252 GLESEINMISEVDSVLTTGEVLELIQSKEVDFKSLEETPLDKILTNINEEGYLYGVHGSS 311
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
GGYAET+FR+AAKTLFG+ I+ L F+ IRNSDF+EV LEVEGKT+LKFALCYGF+NLQN
Sbjct: 312 GGYAETIFRYAAKTLFGRQIDDPLTFRNIRNSDFQEVTLEVEGKTVLKFALCYGFRNLQN 371
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
IVRK+K KCDY F+E+MACPSGCLNGGGQIKP GQSPKEL + LE++Y+ENV++A PF
Sbjct: 372 IVRKLKNGKCDYHFLEIMACPSGCLNGGGQIKPNSGQSPKELSQLLESVYMENVLVASPF 431
Query: 361 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
NP+++ LYD+WLEQPGS KA++++HT+YHPV KSIT+QLHNW
Sbjct: 432 DNPIIKGLYDKWLEQPGSVKARRYMHTQYHPVEKSITSQLHNW 474
>gi|356562481|ref|XP_003549499.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Glycine max]
Length = 474
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/403 (74%), Positives = 358/403 (88%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQSLDEFL+NIN GKAVI+SLSPQSRAS+A HFGISP+Q FKKLT F KSLGVK+IF
Sbjct: 72 MLEKQSLDEFLNNINSGKAVIVSLSPQSRASIAFHFGISPIQAFKKLTRFFKSLGVKAIF 131
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTSCSRDLTL+E+C EFI RY+Q+Q +DERS SSLPM++SACPGWICYAEKQLGS++LP
Sbjct: 132 DTSCSRDLTLVESCVEFITRYRQNQVVEDERSKSSLPMIASACPGWICYAEKQLGSFVLP 191
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
YISSVKSPQQTIG IK+++CQ+LG RP+E+YHVTVMPCYDKKLEAAR+DFVFQ +S E
Sbjct: 192 YISSVKSPQQTIGVIIKNYVCQELGLRPEEVYHVTVMPCYDKKLEAARDDFVFQFESHAE 251
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
E I EVDSVLTTGEVL+LIQ K V+F++L+E+ LDK+LTN++++G+LYGV+GSS
Sbjct: 252 GRESEINMISEVDSVLTTGEVLELIQSKEVDFKSLDETTLDKILTNINEDGYLYGVSGSS 311
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
GGYAET+FR+AAKTLFG+ I+G L FK IRNSDF+EV LEVEGKT+LKFALCYGF+NLQN
Sbjct: 312 GGYAETIFRYAAKTLFGRQIDGPLTFKNIRNSDFQEVTLEVEGKTVLKFALCYGFRNLQN 371
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
IVRK+K KCDY F+E+MACPSGCLNGGGQIKP GQSPKEL + LE++Y+ENV++A PF
Sbjct: 372 IVRKLKTGKCDYHFLEIMACPSGCLNGGGQIKPSSGQSPKELSQLLESVYMENVLVASPF 431
Query: 361 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
NP+V+ LYD+WLEQPGS KA +++HT+YHPV KSIT+QLHNW
Sbjct: 432 DNPIVKGLYDKWLEQPGSVKAGRYMHTQYHPVEKSITSQLHNW 474
>gi|255647952|gb|ACU24433.1| unknown [Glycine max]
Length = 474
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/403 (74%), Positives = 357/403 (88%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQSLDEFL+NIN GKAVI+SLSPQSRAS+A HFGISP+Q FKKLT F KSLGVK+IF
Sbjct: 72 MLEKQSLDEFLNNINSGKAVIVSLSPQSRASIAFHFGISPIQAFKKLTRFFKSLGVKAIF 131
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTSCSRDLTL+E+C EFI RY+Q+Q +DERS SSLPM++SACPGWICYAEKQLGS++LP
Sbjct: 132 DTSCSRDLTLVESCVEFITRYRQNQVVEDERSKSSLPMIASACPGWICYAEKQLGSFVLP 191
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
YISSVKSPQQTIG IK+++CQ+LG RP+E+YHVTVMPCYDKKLEAAR+DFVFQ +S E
Sbjct: 192 YISSVKSPQQTIGVIIKNYVCQELGLRPEEVYHVTVMPCYDKKLEAARDDFVFQFESHAE 251
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
E I EVDSVLTTGEVL+LIQ K V+F++L+E+ LDK+LTN++++G+LYGV+GSS
Sbjct: 252 GRESEINMISEVDSVLTTGEVLELIQSKEVDFKSLDETTLDKILTNINEDGYLYGVSGSS 311
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
GGYAET+FR+AAKTLFG+ I+G L FK IRNSDF+EV LEVEGKT+LKFALCYGF+NLQN
Sbjct: 312 GGYAETIFRYAAKTLFGRQIDGPLTFKNIRNSDFQEVTLEVEGKTVLKFALCYGFRNLQN 371
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
IVRK+K KCDY F+E+MACPSGCLNGGGQIKP GQSPKEL + LE++Y+ENV++A PF
Sbjct: 372 IVRKLKTGKCDYHFLEIMACPSGCLNGGGQIKPSSGQSPKELSQLLESVYMENVLVASPF 431
Query: 361 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
NP+V+ LYD+WLEQPGS KA +++HT+YHPV KSIT QLHNW
Sbjct: 432 DNPIVKGLYDKWLEQPGSVKAGRYMHTQYHPVEKSITFQLHNW 474
>gi|297800500|ref|XP_002868134.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313970|gb|EFH44393.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 474
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/405 (74%), Positives = 352/405 (86%), Gaps = 7/405 (1%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQSLDEFLS ++KGK VI+S+SPQSRASLA H+ ISPLQVFKKLTTFLKSLGVK++F
Sbjct: 75 MLEKQSLDEFLSALSKGKDVIVSISPQSRASLAVHYEISPLQVFKKLTTFLKSLGVKAVF 134
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTSCSRDL LIEACNEF++RYKQ+ D E S S LP+LSSACPGWICYAEKQLGSY+LP
Sbjct: 135 DTSCSRDLVLIEACNEFVSRYKQANSDDGENSQSPLPVLSSACPGWICYAEKQLGSYVLP 194
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
Y+SSVKSPQQ IGA IKHH+CQ LG R E+YHVT MPCYDKKLEAAR+DFVF E+
Sbjct: 195 YVSSVKSPQQAIGAAIKHHLCQALGLRLQEVYHVTAMPCYDKKLEAARDDFVF-----ED 249
Query: 181 TYRDEG-LEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS 239
+D G L++ EVDSVLTTGE+LDLI+LK V+F+ LEESPLD+MLTNV +EGHLYGVAGS
Sbjct: 250 GAQDNGSLKLTEVDSVLTTGEILDLIKLKGVDFKDLEESPLDRMLTNVTEEGHLYGVAGS 309
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQ 299
SGGYAET+FRHAAK LFG+ IEG LEFKT+RNSDFREV L++EGKT+LKFALCYGFQNLQ
Sbjct: 310 SGGYAETIFRHAAKALFGQTIEGPLEFKTLRNSDFREVTLQLEGKTVLKFALCYGFQNLQ 369
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVML-AD 358
NIVR+VK RKCDY +VE+MACP+GCLNGGGQIKPK GQS KELI +LE Y+ + L D
Sbjct: 370 NIVRRVKTRKCDYHYVEIMACPAGCLNGGGQIKPKTGQSQKELINSLEATYMNDTTLNTD 429
Query: 359 PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
P++NP + LY+EWL++PGS +AKK +HT+YHPVVKS+T+QL+NW
Sbjct: 430 PYQNPTAKRLYEEWLKEPGSNEAKKFLHTQYHPVVKSVTSQLNNW 474
>gi|240255938|ref|NP_567496.4| ferredoxin hydrogenase [Arabidopsis thaliana]
gi|15020824|emb|CAC44620.1| Narf-like protein [Arabidopsis thaliana]
gi|332658348|gb|AEE83748.1| ferredoxin hydrogenase [Arabidopsis thaliana]
Length = 474
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 295/404 (73%), Positives = 353/404 (87%), Gaps = 5/404 (1%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQSLDEFLS ++KGK V++S+SPQSRASLA H+ ISPLQVFKKLTTFLKSLGVK++F
Sbjct: 75 MLEKQSLDEFLSALSKGKDVVVSVSPQSRASLAVHYDISPLQVFKKLTTFLKSLGVKAVF 134
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTSCSRDL LIE+CNEF++RYKQ+ D E S S LP+LSSACPGWICYAEKQLGSY+LP
Sbjct: 135 DTSCSRDLVLIESCNEFVSRYKQANSDDGENSQSPLPVLSSACPGWICYAEKQLGSYVLP 194
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
Y+SSVKSPQQ IGA IKHH+CQ LG R E+YHVTVMPCYDKKLEAAR+DFVF +Q+
Sbjct: 195 YVSSVKSPQQAIGAAIKHHLCQALGLRLHEVYHVTVMPCYDKKLEAARDDFVFDDGTQD- 253
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
+ L++ EVDSVLTTGE++DLI+LK V+F+ LEESPLD++LTNV +EG LYGVAGSS
Sbjct: 254 ---NGDLKLTEVDSVLTTGEIMDLIKLKGVDFKDLEESPLDRVLTNVTEEGDLYGVAGSS 310
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
GGYAET+FRHAAK LFG+ IEG LEFKT+RNSDFREV L++EGKT+LKFALCYGFQNLQN
Sbjct: 311 GGYAETIFRHAAKALFGQTIEGPLEFKTLRNSDFREVTLQLEGKTVLKFALCYGFQNLQN 370
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVML-ADP 359
IVR+VK RKCDYQ+VE+MACP+GCLNGGGQIKPK GQS KELI +LE Y+ + L DP
Sbjct: 371 IVRRVKTRKCDYQYVEIMACPAGCLNGGGQIKPKTGQSQKELIHSLEATYMNDTTLNTDP 430
Query: 360 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
++NP + L++EWL++PGS +AKK++HT+YHPVVKS+T+QL+NW
Sbjct: 431 YQNPTAKRLFEEWLKEPGSNEAKKYLHTQYHPVVKSVTSQLNNW 474
>gi|357467417|ref|XP_003603993.1| Cytosolic Fe-S cluster assembly factor NARFL [Medicago truncatula]
gi|355493041|gb|AES74244.1| Cytosolic Fe-S cluster assembly factor NARFL [Medicago truncatula]
Length = 483
Score = 635 bits (1639), Expect = e-180, Method: Compositional matrix adjust.
Identities = 292/403 (72%), Positives = 350/403 (86%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQ LDEFLSNINKGKAVI+S+SPQSR S+A HFGISP+Q FKKLT F KSLGV++IF
Sbjct: 81 MLEKQGLDEFLSNINKGKAVIVSVSPQSRTSIATHFGISPVQAFKKLTRFFKSLGVRAIF 140
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTSCSRDLTL+E+C EFI RY+Q+Q DDERS SSLPM++SACPGWICYAEKQLGS++LP
Sbjct: 141 DTSCSRDLTLVESCVEFITRYRQNQLVDDERSKSSLPMIASACPGWICYAEKQLGSFVLP 200
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
YISSVKSPQQTIG IK ++CQ + RP+E+YHVTVMPCYDKKLEA+R+DFVFQLD E
Sbjct: 201 YISSVKSPQQTIGTIIKRYVCQDMELRPEEVYHVTVMPCYDKKLEASRDDFVFQLDPHAE 260
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
+ E I EVDSVLTTGE+L+L+Q K V+F++LEE+PLDK+LTNV++EG LYGV GSS
Sbjct: 261 GHEGEVNMISEVDSVLTTGEILELVQSKEVDFKSLEEAPLDKLLTNVNEEGDLYGVRGSS 320
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
GGYAET+FR+AAKTLFG+ I+G L+F+ IRNSDF+EV LEVEG+T+LKFALCYGF+NLQN
Sbjct: 321 GGYAETIFRYAAKTLFGRHIDGPLDFRNIRNSDFQEVTLEVEGETVLKFALCYGFRNLQN 380
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
VRK+K K DY F+E+MACPSGCLNGGGQIKP GQS KEL LE++Y+ENV+ A+PF
Sbjct: 381 TVRKLKTGKYDYHFLEIMACPSGCLNGGGQIKPVSGQSAKELSHLLESVYMENVLPAEPF 440
Query: 361 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
NP+++ LYD WLEQPGSEKA++ +HT+YH V KSIT+QLHNW
Sbjct: 441 DNPIIKGLYDNWLEQPGSEKARRFMHTQYHAVKKSITSQLHNW 483
>gi|357467419|ref|XP_003603994.1| Cytosolic Fe-S cluster assembly factor NARFL [Medicago truncatula]
gi|355493042|gb|AES74245.1| Cytosolic Fe-S cluster assembly factor NARFL [Medicago truncatula]
Length = 403
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 292/403 (72%), Positives = 350/403 (86%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQ LDEFLSNINKGKAVI+S+SPQSR S+A HFGISP+Q FKKLT F KSLGV++IF
Sbjct: 1 MLEKQGLDEFLSNINKGKAVIVSVSPQSRTSIATHFGISPVQAFKKLTRFFKSLGVRAIF 60
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTSCSRDLTL+E+C EFI RY+Q+Q DDERS SSLPM++SACPGWICYAEKQLGS++LP
Sbjct: 61 DTSCSRDLTLVESCVEFITRYRQNQLVDDERSKSSLPMIASACPGWICYAEKQLGSFVLP 120
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
YISSVKSPQQTIG IK ++CQ + RP+E+YHVTVMPCYDKKLEA+R+DFVFQLD E
Sbjct: 121 YISSVKSPQQTIGTIIKRYVCQDMELRPEEVYHVTVMPCYDKKLEASRDDFVFQLDPHAE 180
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
+ E I EVDSVLTTGE+L+L+Q K V+F++LEE+PLDK+LTNV++EG LYGV GSS
Sbjct: 181 GHEGEVNMISEVDSVLTTGEILELVQSKEVDFKSLEEAPLDKLLTNVNEEGDLYGVRGSS 240
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
GGYAET+FR+AAKTLFG+ I+G L+F+ IRNSDF+EV LEVEG+T+LKFALCYGF+NLQN
Sbjct: 241 GGYAETIFRYAAKTLFGRHIDGPLDFRNIRNSDFQEVTLEVEGETVLKFALCYGFRNLQN 300
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
VRK+K K DY F+E+MACPSGCLNGGGQIKP GQS KEL LE++Y+ENV+ A+PF
Sbjct: 301 TVRKLKTGKYDYHFLEIMACPSGCLNGGGQIKPVSGQSAKELSHLLESVYMENVLPAEPF 360
Query: 361 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
NP+++ LYD WLEQPGSEKA++ +HT+YH V KSIT+QLHNW
Sbjct: 361 DNPIIKGLYDNWLEQPGSEKARRFMHTQYHAVKKSITSQLHNW 403
>gi|16754852|emb|CAD10687.1| Narf-like protein [Medicago truncatula]
Length = 479
Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust.
Identities = 292/403 (72%), Positives = 349/403 (86%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQ LDEFLSNINKGKAVI+S+SPQSR S+A HFGIS +Q FKKLT F KSLGV++IF
Sbjct: 77 MLEKQGLDEFLSNINKGKAVIVSVSPQSRTSIATHFGISAVQAFKKLTRFFKSLGVRAIF 136
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTSCSRDLTL+E+C EFI RY+Q+Q DDERS SSLPM++SACPGWICYAEKQLGS++LP
Sbjct: 137 DTSCSRDLTLVESCVEFITRYRQNQLVDDERSKSSLPMIASACPGWICYAEKQLGSFVLP 196
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
YISSVKSPQQTIG IK ++CQ + RP+E+YHVTVMPCYDKKLEA+R+DFVFQLD E
Sbjct: 197 YISSVKSPQQTIGTIIKRYVCQDMELRPEEVYHVTVMPCYDKKLEASRDDFVFQLDPHAE 256
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
+ E I EVDSVLTTGE+L+LIQ K V+F++LEE+PLDK+LTNV++EG LYGV GSS
Sbjct: 257 GHEGEVNMISEVDSVLTTGEILELIQSKEVDFKSLEEAPLDKLLTNVNEEGDLYGVRGSS 316
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
GGYAET+FR+AAKTLFG+ I+G L+F+ IRNSDF+EV LEVEG+T+LKFALCYGF+NLQN
Sbjct: 317 GGYAETIFRYAAKTLFGRHIDGPLDFRNIRNSDFQEVTLEVEGETVLKFALCYGFRNLQN 376
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
VRK+K K DY F+E+MACPSGCLNGGGQIKP GQS KEL LE++Y+ENV+ A+PF
Sbjct: 377 TVRKLKTGKYDYHFLEIMACPSGCLNGGGQIKPVSGQSAKELSHLLESVYMENVLPAEPF 436
Query: 361 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
NP+++ LYD WLEQPGSEKA++ +HT+YH V KSIT+QLHNW
Sbjct: 437 DNPIIKGLYDNWLEQPGSEKARRFMHTQYHAVKKSITSQLHNW 479
>gi|289540933|gb|ADD09604.1| ferredoxin hydrogenase [Trifolium repens]
Length = 495
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 292/424 (68%), Positives = 356/424 (83%), Gaps = 21/424 (4%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQ LDEF+S I+KGKAVI+S+SPQSRAS+A HFG+SPLQ FKKLT F KSLGV++IF
Sbjct: 72 MLEKQGLDEFMSTISKGKAVIVSVSPQSRASIAAHFGVSPLQAFKKLTRFFKSLGVRAIF 131
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTSCSRDLTL+E+C EFI RY+QSQ DDERSNSSLPM++SACPGWICYAEK+LGS++LP
Sbjct: 132 DTSCSRDLTLVESCLEFITRYRQSQLIDDERSNSSLPMIASACPGWICYAEKKLGSFVLP 191
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
YISSVKSPQQTIG IK ++CQ + RP+E++HVTVMPCYDKKLEA+R+DFVFQL+ +
Sbjct: 192 YISSVKSPQQTIGTIIKRYVCQDMELRPEEVHHVTVMPCYDKKLEASRDDFVFQLEPHAD 251
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
E I EVDSVLTTGE+L+LIQ K V+F++LEE+PLDK+LTN++DEG+LYGV GSS
Sbjct: 252 GSEGEVNMISEVDSVLTTGEILELIQSKEVDFKSLEEAPLDKLLTNINDEGYLYGVRGSS 311
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALE-------------------- 280
GGYAET+FR+AAKTLFG+ I+G L F+ IRNSDF+EV LE
Sbjct: 312 GGYAETIFRYAAKTLFGRHIDGPLNFRNIRNSDFQEVTLEASRATSFVIIFISVLIPKSG 371
Query: 281 -VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP 339
VEG+T+LKFALCYGF+NLQNIVRK+K K DY F+E+MACPSGCLNGGGQIKP PGQS
Sbjct: 372 FVEGETVLKFALCYGFRNLQNIVRKLKTGKYDYHFLEIMACPSGCLNGGGQIKPIPGQSA 431
Query: 340 KELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 399
K+L + LE++YLENV+ ADPF NP+++ LYD+WLEQPGSEKAK+++HT+YHP+ KS+T+Q
Sbjct: 432 KQLSQLLESVYLENVLAADPFDNPIIKGLYDKWLEQPGSEKAKRYMHTQYHPIEKSVTSQ 491
Query: 400 LHNW 403
LHNW
Sbjct: 492 LHNW 495
>gi|357472589|ref|XP_003606579.1| Cytosolic Fe-S cluster assembly factor NARFL [Medicago truncatula]
gi|355507634|gb|AES88776.1| Cytosolic Fe-S cluster assembly factor NARFL [Medicago truncatula]
Length = 570
Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust.
Identities = 276/409 (67%), Positives = 347/409 (84%), Gaps = 10/409 (2%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
+L Q LDEFLSNIN+GK VI+S+SPQSRAS+A HF ISPLQVFKKLT F KSLGV+++F
Sbjct: 166 LLNNQGLDEFLSNINEGKTVIVSVSPQSRASIAAHFRISPLQVFKKLTRFFKSLGVRAVF 225
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTSCSRDLTL+E+C EF++RY+++Q DDERS SSLPM+SSACPG ICYAEK GS +LP
Sbjct: 226 DTSCSRDLTLVESCVEFVSRYRKNQFVDDERSKSSLPMISSACPGLICYAEKSHGSVLLP 285
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
YISSVKSPQQTIG IK ++CQ + RP+E+YHVTVMPCYDKKLEA+R+DFVFQL E
Sbjct: 286 YISSVKSPQQTIGTIIKRYLCQDMELRPEEVYHVTVMPCYDKKLEASRDDFVFQL----E 341
Query: 181 TYRDEGLE-----IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG 235
++ DEG E + EVDSVLTTGE+L+LIQ K V+F++LEE+PLDK+L+N+++EGHLYG
Sbjct: 342 SHFDEGREGEVNRVLEVDSVLTTGEILELIQSKEVDFKSLEEAPLDKLLSNINEEGHLYG 401
Query: 236 VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGF 295
V GSSGGYAET+FR+AAKTLFG+ I+G L F+ I+NSD++EV LEV+G+T+LKFALCYGF
Sbjct: 402 VRGSSGGYAETIFRYAAKTLFGRHIDGPLNFRNIKNSDYQEVTLEVDGETVLKFALCYGF 461
Query: 296 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM 355
NLQ + K+K+ K DY F+E+MACPSGCLNG GQIKP GQS KEL + LE++Y+ENV+
Sbjct: 462 SNLQKNIPKLKVGKSDYHFLEIMACPSGCLNGAGQIKPISGQSAKELSQLLESVYMENVL 521
Query: 356 -LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
+ +PF NP+++ LYD+WL QPGSEKA+ ++HT+YHPV KSIT++LHNW
Sbjct: 522 AIEEPFDNPIIKGLYDKWLGQPGSEKARSYMHTQYHPVQKSITSELHNW 570
>gi|84794308|emb|CAJ55835.1| hypothetical protein [Medicago truncatula]
Length = 478
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 275/409 (67%), Positives = 346/409 (84%), Gaps = 10/409 (2%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
+L Q LDEFLSNIN+GK VI+S+SPQSRAS+A HF ISPLQVFKKLT F KSLGV+++F
Sbjct: 74 LLNNQGLDEFLSNINEGKTVIVSVSPQSRASIAAHFRISPLQVFKKLTRFFKSLGVRAVF 133
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTSCSRDLTL+E+C EF++RY+++Q DDERS SSLPM+SSACPG ICYAEK GS +LP
Sbjct: 134 DTSCSRDLTLVESCVEFVSRYRKNQFVDDERSKSSLPMISSACPGLICYAEKSHGSVLLP 193
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
YISSVKSPQQTIG IK ++CQ + RP+E+YHVTVMPCYDKKLEA+R+DFVFQL E
Sbjct: 194 YISSVKSPQQTIGTIIKRYLCQDMELRPEEVYHVTVMPCYDKKLEASRDDFVFQL----E 249
Query: 181 TYRDEGLE-----IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG 235
++ DEG E + EVDSVLTTGE+L+LIQ K V+F++LEE+PLDK+L+N+++EGHLYG
Sbjct: 250 SHFDEGREGEVNRVLEVDSVLTTGEILELIQSKEVDFKSLEEAPLDKLLSNINEEGHLYG 309
Query: 236 VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGF 295
V GSSGGYAET+FR+AAKTLFG+ I+G L F+ I+NSD++EV LEV+G+T+LKFALCYGF
Sbjct: 310 VRGSSGGYAETIFRYAAKTLFGRHIDGPLNFRNIKNSDYQEVTLEVDGETVLKFALCYGF 369
Query: 296 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM 355
NLQ + K+K+ K DY F+E+MACPSGCLNG GQIKP GQS KEL + LE++Y+ENV+
Sbjct: 370 SNLQKNIPKLKVGKSDYHFLEIMACPSGCLNGAGQIKPISGQSAKELSQLLESVYMENVL 429
Query: 356 -LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
+ +PF NP+++ LYD+WL QPG EKA+ ++HT+YHPV KSIT++LHNW
Sbjct: 430 AIEEPFDNPIIKGLYDKWLGQPGFEKARSYMHTQYHPVQKSITSELHNW 478
>gi|357115639|ref|XP_003559595.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Brachypodium distachyon]
Length = 471
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 278/403 (68%), Positives = 340/403 (84%), Gaps = 9/403 (2%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQSLD+F+S IN GKAVI+S+SPQSRASLA FG+S QVF+KLT KS+GVK+++
Sbjct: 78 MLEKQSLDDFVSRINSGKAVIVSVSPQSRASLAAFFGLSQSQVFRKLTALFKSMGVKAVY 137
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTS SRDL LIEACNEFI+RY+ Q S+ + +SLP+LSSACPGWICYAEK LGSYILP
Sbjct: 138 DTSSSRDLALIEACNEFISRYQLKQSSNGKEVGTSLPLLSSACPGWICYAEKTLGSYILP 197
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
YISSVKSPQQ IGA IKHH+ +KLG +P ++YHVTVMPCYDKKLEA R+DFVF ++ +E
Sbjct: 198 YISSVKSPQQVIGAAIKHHMVEKLGLKPYDVYHVTVMPCYDKKLEAVRDDFVFSVEEKE- 256
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
I EVDSVLTTGEVLDLIQ K+ +F+ +EESPLD++LTNVD++GHLYGV+G S
Sbjct: 257 --------ITEVDSVLTTGEVLDLIQSKSFDFKTMEESPLDRLLTNVDEDGHLYGVSGGS 308
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
GGYAET+FR+AA+ LF + IEG L+FK +RNSDFREV LEV+GK +LKFALCYGF+NLQN
Sbjct: 309 GGYAETIFRYAARALFNREIEGPLDFKILRNSDFREVTLEVDGKPVLKFALCYGFRNLQN 368
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
IVRK+KM KC+YQF+EVMACPSGCLNGGGQIKP GQS K+LI+ LE +Y+++V +++PF
Sbjct: 369 IVRKIKMGKCEYQFIEVMACPSGCLNGGGQIKPVKGQSAKDLIQQLEGVYIQDVSISNPF 428
Query: 361 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
NP+ LYD+WL QPGSE AKK++HT+YHPVVKS+ +QL NW
Sbjct: 429 DNPIATRLYDDWLVQPGSENAKKYLHTKYHPVVKSVASQLQNW 471
>gi|413933075|gb|AFW67626.1| hypothetical protein ZEAMMB73_922832 [Zea mays]
Length = 472
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 268/403 (66%), Positives = 338/403 (83%), Gaps = 9/403 (2%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQSL +F+ IN KAVI+S+SPQSRASLA FG+S QV +KLT+ KS+GVK++F
Sbjct: 79 MLEKQSLGDFIDRINSDKAVIVSVSPQSRASLAAFFGLSQSQVLRKLTSLFKSIGVKAVF 138
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTS SRDL+LIEACNEF++RY++SQ S + + ++LP++SSACPGWICYAEK LGSYILP
Sbjct: 139 DTSSSRDLSLIEACNEFVSRYQRSQPSSGQEAGANLPLISSACPGWICYAEKTLGSYILP 198
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
YISSVKSPQQ IGA IKHH+ ++LG +P +YHVTVMPCYDKKLEA R+DF F +D
Sbjct: 199 YISSVKSPQQAIGAAIKHHVAERLGLKPYHVYHVTVMPCYDKKLEAVRDDFTFSVD---- 254
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
G E+ EVDSVLTTGEVLDLIQ K+++F+ +EES LD++LTNVD+EGHLYGV+G S
Sbjct: 255 -----GKEVTEVDSVLTTGEVLDLIQSKSIDFKTVEESSLDRLLTNVDEEGHLYGVSGGS 309
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
GGYAET+FR+ A ++ + IEG L+F+ +RNSDFRE+ LEVEGK +LKFALCYGF+NLQN
Sbjct: 310 GGYAETIFRYVAHVIYKREIEGPLDFRILRNSDFREITLEVEGKPVLKFALCYGFRNLQN 369
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
+VRK+KM KC+Y F+EVMACPSGCLNGGGQ+KP GQS KELI+ LE++Y ++++++DPF
Sbjct: 370 VVRKIKMGKCEYHFIEVMACPSGCLNGGGQLKPVEGQSAKELIQQLESVYTQDILISDPF 429
Query: 361 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
+NP+ + LYDEWL QPGSE AKK++HTEYHPVVKS+ +QL NW
Sbjct: 430 RNPIAKKLYDEWLGQPGSENAKKYLHTEYHPVVKSVASQLQNW 472
>gi|215695478|dbj|BAG90639.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 394
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 271/403 (67%), Positives = 337/403 (83%), Gaps = 9/403 (2%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQSL +F++ IN KAVI+S+SPQSRASLA FG+S QVF+KLT KS+GVK+++
Sbjct: 1 MLEKQSLGDFITRINSDKAVIVSVSPQSRASLAAFFGLSQSQVFRKLTALFKSMGVKAVY 60
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTS SRDL+LIEAC+EF+ RY Q+Q S + + +LPMLSSACPGWICYAEK LGS+ILP
Sbjct: 61 DTSSSRDLSLIEACSEFVTRYHQNQLSSGKEAGKNLPMLSSACPGWICYAEKTLGSFILP 120
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
YIS+VKSPQQ IGA IKHH+ KLG +P ++YHVTVMPCYDKKLEA R+DFVF ++ ++
Sbjct: 121 YISAVKSPQQAIGAAIKHHMVGKLGLKPHDVYHVTVMPCYDKKLEAVRDDFVFSVEDKDV 180
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
T EVDSVLTTGEVLDLIQ ++V+F+ LEESP+D++LTNVDD+G LYGV+G S
Sbjct: 181 T---------EVDSVLTTGEVLDLIQSRSVDFKTLEESPMDRLLTNVDDDGQLYGVSGGS 231
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
GGYAETVFRHAA LF + IEG ++F+ +RNSDFREV LEVEGK +LKFALCYGF+NLQN
Sbjct: 232 GGYAETVFRHAAHVLFDRKIEGSVDFRILRNSDFREVTLEVEGKPVLKFALCYGFRNLQN 291
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
I+RK+KM KC+Y F+EVMACPSGCLNGGGQIKP GQS K+LI+ LE +Y+++V +++PF
Sbjct: 292 IIRKIKMGKCEYHFIEVMACPSGCLNGGGQIKPAKGQSAKDLIQLLEDVYIQDVSVSNPF 351
Query: 361 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
+NP+ + LYDEWL QPGSE AKK++HT+YHPVVKS+ +QL NW
Sbjct: 352 ENPIAKRLYDEWLGQPGSENAKKYLHTKYHPVVKSVASQLQNW 394
>gi|125587922|gb|EAZ28586.1| hypothetical protein OsJ_12572 [Oryza sativa Japonica Group]
Length = 414
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 271/403 (67%), Positives = 337/403 (83%), Gaps = 9/403 (2%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQSL +F++ IN KAVI+S+SPQSRASLA FG+S QVF+KLT KS+GVK+++
Sbjct: 21 MLEKQSLGDFITRINSDKAVIVSVSPQSRASLAAFFGLSQSQVFRKLTALFKSMGVKAVY 80
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTS SRDL+LIEAC+EF+ RY Q+Q S + + +LPMLSSACPGWICYAEK LGS+ILP
Sbjct: 81 DTSSSRDLSLIEACSEFVTRYHQNQLSSGKEAGKNLPMLSSACPGWICYAEKTLGSFILP 140
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
YIS+VKSPQQ IGA IKHH+ KLG +P ++YHVTVMPCYDKKLEA R+DFVF ++ ++
Sbjct: 141 YISAVKSPQQAIGAAIKHHMVGKLGLKPHDVYHVTVMPCYDKKLEAVRDDFVFSVEDKDV 200
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
T EVDSVLTTGEVLDLIQ ++V+F+ LEESP+D++LTNVDD+G LYGV+G S
Sbjct: 201 T---------EVDSVLTTGEVLDLIQSRSVDFKTLEESPMDRLLTNVDDDGQLYGVSGGS 251
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
GGYAETVFRHAA LF + IEG ++F+ +RNSDFREV LEVEGK +LKFALCYGF+NLQN
Sbjct: 252 GGYAETVFRHAAHVLFDRKIEGSVDFRILRNSDFREVTLEVEGKPVLKFALCYGFRNLQN 311
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
I+RK+KM KC+Y F+EVMACPSGCLNGGGQIKP GQS K+LI+ LE +Y+++V +++PF
Sbjct: 312 IIRKIKMGKCEYHFIEVMACPSGCLNGGGQIKPAKGQSAKDLIQLLEDVYIQDVSVSNPF 371
Query: 361 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
+NP+ + LYDEWL QPGSE AKK++HT+YHPVVKS+ +QL NW
Sbjct: 372 ENPIAKRLYDEWLGQPGSENAKKYLHTKYHPVVKSVASQLQNW 414
>gi|115455341|ref|NP_001051271.1| Os03g0748700 [Oryza sativa Japonica Group]
gi|18087682|gb|AAL58974.1|AC091811_23 putative hydrogenase [Oryza sativa Japonica Group]
gi|108711082|gb|ABF98877.1| Narf, putative, expressed [Oryza sativa Japonica Group]
gi|113549742|dbj|BAF13185.1| Os03g0748700 [Oryza sativa Japonica Group]
gi|125545724|gb|EAY91863.1| hypothetical protein OsI_13510 [Oryza sativa Indica Group]
Length = 476
Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust.
Identities = 271/403 (67%), Positives = 337/403 (83%), Gaps = 9/403 (2%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQSL +F++ IN KAVI+S+SPQSRASLA FG+S QVF+KLT KS+GVK+++
Sbjct: 83 MLEKQSLGDFITRINSDKAVIVSVSPQSRASLAAFFGLSQSQVFRKLTALFKSMGVKAVY 142
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTS SRDL+LIEAC+EF+ RY Q+Q S + + +LPMLSSACPGWICYAEK LGS+ILP
Sbjct: 143 DTSSSRDLSLIEACSEFVTRYHQNQLSSGKEAGKNLPMLSSACPGWICYAEKTLGSFILP 202
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
YIS+VKSPQQ IGA IKHH+ KLG +P ++YHVTVMPCYDKKLEA R+DFVF ++ ++
Sbjct: 203 YISAVKSPQQAIGAAIKHHMVGKLGLKPHDVYHVTVMPCYDKKLEAVRDDFVFSVEDKDV 262
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
T EVDSVLTTGEVLDLIQ ++V+F+ LEESP+D++LTNVDD+G LYGV+G S
Sbjct: 263 T---------EVDSVLTTGEVLDLIQSRSVDFKTLEESPMDRLLTNVDDDGQLYGVSGGS 313
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
GGYAETVFRHAA LF + IEG ++F+ +RNSDFREV LEVEGK +LKFALCYGF+NLQN
Sbjct: 314 GGYAETVFRHAAHVLFDRKIEGSVDFRILRNSDFREVTLEVEGKPVLKFALCYGFRNLQN 373
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
I+RK+KM KC+Y F+EVMACPSGCLNGGGQIKP GQS K+LI+ LE +Y+++V +++PF
Sbjct: 374 IIRKIKMGKCEYHFIEVMACPSGCLNGGGQIKPAKGQSAKDLIQLLEDVYIQDVSVSNPF 433
Query: 361 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
+NP+ + LYDEWL QPGSE AKK++HT+YHPVVKS+ +QL NW
Sbjct: 434 ENPIAKRLYDEWLGQPGSENAKKYLHTKYHPVVKSVASQLQNW 476
>gi|294460159|gb|ADE75662.1| unknown [Picea sitchensis]
Length = 488
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 267/405 (65%), Positives = 340/405 (83%), Gaps = 2/405 (0%)
Query: 1 MLEKQSLDEFLSNINKGK-AVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSI 59
MLE+QS++EFLS+I G+ AV++S+SPQSRASLA ++G++PLQVFKKLT FLKSLGVK++
Sbjct: 84 MLEQQSVNEFLSHIRSGENAVVVSVSPQSRASLATYYGLTPLQVFKKLTGFLKSLGVKAV 143
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
FDTSCSRDL+LIEAC EF+ YK ++++ SSLPML+SACPGWICYAEK LG IL
Sbjct: 144 FDTSCSRDLSLIEACEEFVQCYKGQFSGENDQLKSSLPMLASACPGWICYAEKTLGPCIL 203
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
PYIS+VKSPQQ +GA IKHH+ +K+G P++IYHVT+MPCYDKKLEA R+DF+F ++ Q
Sbjct: 204 PYISTVKSPQQAMGAIIKHHVSKKMGLVPEKIYHVTIMPCYDKKLEAVRDDFIFSVERQG 263
Query: 180 ETYRDE-GLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
ET ++ G + EVD VLT+GE+LDL ++K ++F++LEE+PLD++LTNVDD+GHLYGV G
Sbjct: 264 ETGQEAAGPRVSEVDCVLTSGEMLDLFKMKNIDFKSLEEAPLDRLLTNVDDKGHLYGVRG 323
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNL 298
SGGYAET+F +AAK L+GK I+G L+FK +RNSDFRE+ LEV G+ +LK ALCYGF+NL
Sbjct: 324 GSGGYAETIFCYAAKQLYGKDIKGPLDFKILRNSDFREIYLEVNGEKVLKVALCYGFRNL 383
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD 358
QNIVRK+K K DY FVEVMACP+GCLNGGGQIKP GQS K+LI++LE+ YLE V++AD
Sbjct: 384 QNIVRKIKAGKSDYHFVEVMACPAGCLNGGGQIKPNQGQSVKDLIQSLESSYLEEVLVAD 443
Query: 359 PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
PF+NPLV+ LYDEWL +PGSEKA K +HTEYH +SI ++L NW
Sbjct: 444 PFENPLVKGLYDEWLGKPGSEKAVKFIHTEYHHRERSIGSELSNW 488
>gi|302820708|ref|XP_002992020.1| hypothetical protein SELMODRAFT_186507 [Selaginella moellendorffii]
gi|300140142|gb|EFJ06869.1| hypothetical protein SELMODRAFT_186507 [Selaginella moellendorffii]
Length = 458
Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust.
Identities = 249/404 (61%), Positives = 323/404 (79%), Gaps = 19/404 (4%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSI 59
MLE QS++EFL+ + + GK+VI+SLSPQSRASLA ++G+S LQVF+KLT FLKSLGVK++
Sbjct: 73 MLEHQSIEEFLNRLSDSGKSVIVSLSPQSRASLAAYYGLSQLQVFRKLTGFLKSLGVKAV 132
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
FDTSCSRDL+LIE+C EF+ RYK+ Q LP+++SACPGWICYAEK L + IL
Sbjct: 133 FDTSCSRDLSLIESCVEFVNRYKERQ----------LPVVTSACPGWICYAEKTLDAEIL 182
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
PYIS VKSPQQ +GA +K H C LG RP+++YHVTVMPCYDKKLEA+R+DF+F L++
Sbjct: 183 PYISRVKSPQQAMGAVLKRHACYALGLRPEDVYHVTVMPCYDKKLEASRDDFIFALENGA 242
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS 239
+ EVDSVLT+GE+LDL+Q + ++F +LEE PLDK+LTNVD++GHLYGV G
Sbjct: 243 SG-------LAEVDSVLTSGEILDLLQSRDIDFMSLEEQPLDKLLTNVDEQGHLYGVPGG 295
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQ 299
SGGYAE VF++AAK LFG + +EF+ +RN+DFREV LEV+G+ LKFAL YGF+N+Q
Sbjct: 296 SGGYAECVFKYAAKHLFGAEPD-RVEFQVVRNADFREVKLEVDGEVRLKFALAYGFRNIQ 354
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADP 359
N+VRK++++KC+YQ+VE+MACPSGCLNGGGQIKPK GQS KELI+ LE+ YL+ V + DP
Sbjct: 355 NLVRKIRLKKCEYQYVEIMACPSGCLNGGGQIKPKEGQSAKELIQNLESAYLQEVEMKDP 414
Query: 360 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
F NP+V+SLYD WL +P S +K+ + TEYH K++T+QL NW
Sbjct: 415 FDNPIVKSLYDSWLGEPASLSSKRVLSTEYHHREKNVTSQLANW 458
>gi|302762170|ref|XP_002964507.1| hypothetical protein SELMODRAFT_81861 [Selaginella moellendorffii]
gi|300168236|gb|EFJ34840.1| hypothetical protein SELMODRAFT_81861 [Selaginella moellendorffii]
Length = 458
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 248/404 (61%), Positives = 323/404 (79%), Gaps = 19/404 (4%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSI 59
MLE QS++EFL+ + + GK+VI+SLSPQSRASLA ++G+S LQVF+KLT FLKSLGVK++
Sbjct: 73 MLEHQSIEEFLNRLSDSGKSVIVSLSPQSRASLAAYYGLSQLQVFRKLTGFLKSLGVKAV 132
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
FDTSCSRDL+LIE+C EF+ RYK+ Q LP+++SACPGWICYAEK L + IL
Sbjct: 133 FDTSCSRDLSLIESCVEFVNRYKERQ----------LPVVTSACPGWICYAEKTLDAEIL 182
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
PYIS VKSPQQ +GA +K H C LG RP+++YHVTVMPCYDKKLEA+R+DF+F +++
Sbjct: 183 PYISRVKSPQQAMGAVLKRHACYALGLRPEDVYHVTVMPCYDKKLEASRDDFIFAVENGA 242
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS 239
+ EVDSVLT+GE+LDL+Q + ++F +LEE PLDK+LTNVD++GHLYGV G
Sbjct: 243 SG-------LAEVDSVLTSGEILDLLQSRDIDFMSLEEQPLDKLLTNVDEQGHLYGVPGG 295
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQ 299
SGGYAE VF++AAK LFG + +EF+ +RN+DFREV LEV+G+ LKFAL YGF+N+Q
Sbjct: 296 SGGYAECVFKYAAKHLFGAEPD-RVEFQVVRNADFREVKLEVDGEVRLKFALAYGFRNIQ 354
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADP 359
N+VRK++++KC+YQ+VE+MACPSGCLNGGGQIKPK GQS KELI+ LE+ YL+ V + DP
Sbjct: 355 NLVRKIRLKKCEYQYVEIMACPSGCLNGGGQIKPKEGQSAKELIQNLESAYLQEVEMKDP 414
Query: 360 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
F NP+V+SLYD WL +P S +K+ + TEYH K++T+QL NW
Sbjct: 415 FDNPIVKSLYDSWLGEPASLSSKRVLSTEYHHREKNVTSQLANW 458
>gi|414872782|tpg|DAA51339.1| TPA: hypothetical protein ZEAMMB73_806611, partial [Zea mays]
Length = 423
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/354 (66%), Positives = 293/354 (82%), Gaps = 9/354 (2%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQSL +F+ +IN KAVI+S+SPQSRASLA FG+S QV +KLT KS+GVK++F
Sbjct: 78 MLEKQSLSDFIDHINSDKAVIVSVSPQSRASLAAFFGLSQSQVLRKLTALFKSIGVKAVF 137
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTS SRDL+LIEACNEF++RY+++ + + ++LPM+SSACPGWICYAEK LGSYILP
Sbjct: 138 DTSSSRDLSLIEACNEFVSRYQKNHSCSGQEAGANLPMISSACPGWICYAEKTLGSYILP 197
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
YISSVKSPQQ IGA IKHH+ KLG +P ++YHVTVMPCYDKKLEA R+DF F +D
Sbjct: 198 YISSVKSPQQAIGAAIKHHVVDKLGLKPYDVYHVTVMPCYDKKLEAVRDDFTFSVD---- 253
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
G E+ EVDSVLTTGEVLDLIQ K+++F+ +EES LD++LTNVD+EGHLYGV+G S
Sbjct: 254 -----GKEVKEVDSVLTTGEVLDLIQSKSIDFKTVEESSLDRLLTNVDEEGHLYGVSGGS 308
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
GGYAETVFR+ A ++ + IEG L+F+ +RNSDFRE+ LEVEGK +LKFALCYGF+NLQN
Sbjct: 309 GGYAETVFRYGANVIYKREIEGPLDFRILRNSDFREITLEVEGKPVLKFALCYGFRNLQN 368
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV 354
IVRK+KM KC+Y F+EVMACPSGCLNGGGQ+KP GQS KELI+ LE++Y ++V
Sbjct: 369 IVRKIKMGKCEYHFIEVMACPSGCLNGGGQLKPVQGQSAKELIQQLESVYTQDV 422
>gi|168052192|ref|XP_001778535.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670133|gb|EDQ56708.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/385 (55%), Positives = 292/385 (75%), Gaps = 15/385 (3%)
Query: 19 AVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
A + L QS ++ F LQV KKL+ FLKSLGVK++FDTSCSRD++L+E+C EF+
Sbjct: 70 AETVMLEQQSTGFVSNLF----LQV-KKLSGFLKSLGVKAVFDTSCSRDISLVESCAEFV 124
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R+++ ++ P+L+S+CPGW+CYAEK G +LPYIS+VKSPQQ +G +K
Sbjct: 125 ERFREKKK---------FPILASSCPGWVCYAEKTHGDDVLPYISAVKSPQQVMGTILKR 175
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
++C+ LG P+++YHVT+MPCYDKKLEAAREDF+F+++ + T ++ +I EVD VLT+
Sbjct: 176 YVCKSLGLLPEDVYHVTIMPCYDKKLEAAREDFIFEVEGEGLTEGNKP-QITEVDCVLTS 234
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
GE+LDL+Q + V F LEE PLD++LTNVD+ HLYGV+G SGGYAE +FR+A++ LFGK
Sbjct: 235 GEILDLLQTRNVVFGELEEVPLDRVLTNVDEREHLYGVSGGSGGYAECIFRYASRELFGK 294
Query: 259 VIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVM 318
I G L+FKT+RN+DFRE+ LEV+GK +LKFAL YGF+N+QNIVR++K +CDY F+EVM
Sbjct: 295 EISGPLQFKTLRNADFREITLEVDGKQVLKFALVYGFRNIQNIVRQIKAGRCDYHFMEVM 354
Query: 319 ACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGS 378
ACPSGCLNGGGQIKPK GQ+ KELI+ LE YL +V + +PF+N +V+ LY EWL P S
Sbjct: 355 ACPSGCLNGGGQIKPKKGQTAKELIQQLEGAYLNDVDVREPFENEIVKGLYKEWLGYPSS 414
Query: 379 EKAKKHVHTEYHPVVKSITAQLHNW 403
EKA + + T+YH K++ + +W
Sbjct: 415 EKASQIMRTQYHVREKTVANFVSDW 439
>gi|356555012|ref|XP_003545834.1| PREDICTED: LOW QUALITY PROTEIN: cytosolic Fe-S cluster assembly
factor narfl-like [Glycine max]
Length = 387
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/347 (60%), Positives = 260/347 (74%), Gaps = 7/347 (2%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
++ GKAVI+SLSP RAS+A HFGISP++ FKKLT F KSLGVK+IF SCS+DLTL+E
Sbjct: 41 SLGSGKAVIVSLSPXLRASIAVHFGISPIRAFKKLTRFFKSLGVKAIFYRSCSKDLTLVE 100
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+C EFI RY Q DDE++ SLPM++ A W+ YA+KQ+GS++LPYISSVK QQTI
Sbjct: 101 SCVEFITRYMQKHLVDDEKTKLSLPMIALAYLDWVSYAKKQVGSFVLPYISSVKILQQTI 160
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
GA IK+++CQ+LG RP E+Y V VMPCYDKKLEA+R DF Q E + E I EV
Sbjct: 161 GAIIKNYVCQELGLRPKEVYRVIVMPCYDKKLEASRNDFASLFGYQVEGHESEINMISEV 220
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VL TGEVL+LIQ K V+F++L E+PLDKML N+++EG++YGV S GGYAET+FR AA
Sbjct: 221 DLVLRTGEVLELIQSKEVDFKSL-ETPLDKMLININEEGYIYGVHRSFGGYAETIFRCAA 279
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K FG+ I+ L FK IRNSDF L +E +LLKFALCYG QNL NIV+K+K KCDY
Sbjct: 280 KKHFGRQIDDCLTFKNIRNSDF----LTLEASSLLKFALCYGLQNLVNIVQKLKTGKCDY 335
Query: 313 QFVEVMACPSG--CLNGGGQIKPKPGQSPKELIKTLETIYLENVMLA 357
+E+MACPSG CLNGGGQ KP G SP EL + LE+ Y+ENV++
Sbjct: 336 HLLEIMACPSGTVCLNGGGQTKPNSGLSPNELSQLLESKYMENVVVG 382
>gi|384245871|gb|EIE19363.1| iron hydrogenase [Coccomyxa subellipsoidea C-169]
Length = 491
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/428 (45%), Positives = 274/428 (64%), Gaps = 36/428 (8%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSI 59
+LE QS EF+S + + G V++S+SPQSR +LA +G+SP + +KLT F K LGV+++
Sbjct: 75 LLEHQSAAEFMSKLADPGVTVVVSVSPQSRTALAAFYGLSPAETLQKLTGFFKGLGVRAV 134
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
DTS RD L+EA EF+ RY+++ S SLPML+SACPGW+CYAEK G Y+L
Sbjct: 135 LDTSTGRDFALLEAAAEFVQRYREAHPELAGESMPSLPMLASACPGWVCYAEKTHGDYVL 194
Query: 120 PYISSVKSPQQT-------------------IGATIKHHICQKLGFRPDEIYHVTVMPCY 160
P+ISS KSPQ + +G +K H+ + G +P ++YH +MPCY
Sbjct: 195 PHISSTKSPQASPQLYKFPANTPSITSLFAVMGTLVKRHLAAQWGLQPGQVYHCAIMPCY 254
Query: 161 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL 220
DKKLEA+REDF G + EVDSVLT+GEV ++++ L + L
Sbjct: 255 DKKLEASREDF-----------NVPGTSVAEVDSVLTSGEVQLMLEVHGRPLGELPSARL 303
Query: 221 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIE-GHLEFKTIRNSDFREVAL 279
D ++ + ++G LYG+ G SGGY E +FR AA LFGK +E G L +T+RN+DF+EV+L
Sbjct: 304 DSLVGSAPEDGQLYGLPGGSGGYLEYIFRAAAAQLFGKEVEAGPLPLRTLRNADFQEVSL 363
Query: 280 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP 339
+V G+ L+FA+ YGF+N+Q +VRK+K +Y +VE+MACPSGCLNGGGQIKP+PGQS
Sbjct: 364 DVGGRPALRFAIAYGFRNIQTLVRKIKRGASEYDYVEIMACPSGCLNGGGQIKPQPGQSS 423
Query: 340 KELIKTLETIYLEN---VMLADPFKNPLVRSLYDEWLEQP-GSEKAKKHVHTEYHPVVKS 395
++L+ L+ IY + V+ P NP V +LY+ W+ P GSE+ ++ TEYH KS
Sbjct: 424 QQLLDELDAIYHDPQACVVPRLPQDNPTVAALYERWVGAPVGSEQGRQLFFTEYHKRDKS 483
Query: 396 ITAQLHNW 403
I A + +W
Sbjct: 484 IAATVGDW 491
>gi|330792992|ref|XP_003284570.1| hypothetical protein DICPUDRAFT_27887 [Dictyostelium purpureum]
gi|325085484|gb|EGC38890.1| hypothetical protein DICPUDRAFT_27887 [Dictyostelium purpureum]
Length = 489
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/419 (48%), Positives = 265/419 (63%), Gaps = 34/419 (8%)
Query: 1 MLEKQSLDEFLSNINKG------KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL 54
++ QS+ EFLSNIN K ++++LSPQSRASLA ++ IS LQV KKL TF KSL
Sbjct: 89 LITAQSIQEFLSNINSNTTDSDKKTIVVTLSPQSRASLAAYYKISTLQVIKKLKTFFKSL 148
Query: 55 GVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQL 114
+ +FD+S SRD +L+E+ EF+ARYK+ Q +D+ LPMLSSACPGWICYAEK
Sbjct: 149 NIDYLFDSSFSRDFSLLESAAEFVARYKK-QLGEDQ----PLPMLSSACPGWICYAEKTH 203
Query: 115 GSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQ 174
G YILPYIS+ KSPQQ +G +K++ +K+ P IYHVT+MPCYDKKLEA+R DF
Sbjct: 204 GDYILPYISTTKSPQQIMGTLVKYYFSKKINIEPSNIYHVTIMPCYDKKLEASRNDF--- 260
Query: 175 LDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES--PLDKMLTNVDDEGH 232
Y D + +VD VL+T E+LDL + K +F LEES + N++ E
Sbjct: 261 -------YND-IFKTKDVDCVLSTSEILDLFKEKNTDFIQLEESTEAITSEYFNINQEQQ 312
Query: 233 -LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFAL 291
YGV GSSGGY E VFR+AAK LF V +E+K RN DF+EV+LEV G+ +L FAL
Sbjct: 313 EFYGVKGSSGGYLEFVFRYAAKELFN-VDVNEIEYKVGRNQDFKEVSLEVNGEKVLNFAL 371
Query: 292 CYGFQNLQNIVRKVKMRKC-------DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIK 344
YGF+N+QNIVRK+K Y FVE+MACPSGC+NGGGQIK + + K +
Sbjct: 372 AYGFRNIQNIVRKIKTNTTIKKESALPYHFVEIMACPSGCINGGGQIKQEGIKENKAFLL 431
Query: 345 TLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
E Y + + + +P NP V+ +Y WL S A +HT+YH + K+ A W
Sbjct: 432 ETEENYNQQI-IRNPQDNPQVQEIYKNWLNGCFSHDAITKLHTQYHRIEKTTNALNIKW 489
>gi|328868553|gb|EGG16931.1| nuclear prelamin A recognition factor-like protein [Dictyostelium
fasciculatum]
Length = 493
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 205/430 (47%), Positives = 271/430 (63%), Gaps = 46/430 (10%)
Query: 1 MLEKQSLDEFLSNINKGKA-------VIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
++ QS EF SN+ K A V++S+SPQSRASLA HFGI +Q+ +KL TFLKS
Sbjct: 83 LISAQSTVEF-SNVLKSIAESKPDSIVVVSISPQSRASLANHFGIDSMQLHRKLVTFLKS 141
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
+GV +FDTS SR+ LIE+ EFIARYKQ+ + LPML+SACPGWICYAEK
Sbjct: 142 IGVNHVFDTSFSREFALIESAEEFIARYKQTY-------DKPLPMLASACPGWICYAEKT 194
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
G Y+LPYIS+ KSPQQ +G +K+++ +K+ P IYHVT+MPCYDKKLEA+R DF
Sbjct: 195 HGDYVLPYISTTKSPQQIMGTLVKYYLSKKINTLPSNIYHVTIMPCYDKKLEASRSDF-- 252
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKA-VNFEALEESPLDKMLTN------ 226
Y D + +VD VL+T EVL+L++ V+ LEE+ LD + N
Sbjct: 253 --------YNDV-FKTKDVDCVLSTSEVLELLKEHGDVDLLKLEEATLDNSIFNNVIFNQ 303
Query: 227 -VDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKT 285
GV GS+GGY E +FR AAK LFGK IEG +E+K RN+DF+E +LEV+GK
Sbjct: 304 QTGQPEKFLGVTGSTGGYFEYLFRRAAKELFGKEIEGEIEYKVGRNTDFKEASLEVDGKK 363
Query: 286 LLKFALCYGFQNLQNIVRKVKM-------RKCDYQFVEVMACPSGCLNGGGQIKPKPG-- 336
+L FA YGF+N+QNIVRK+K ++ Y FVEVMACPSGC+NGGGQIK G
Sbjct: 364 VLSFAKAYGFRNIQNIVRKIKTTTASSSKKEPQYHFVEVMACPSGCINGGGQIKAASGSL 423
Query: 337 QSPKELIKTLETIYLENVMLADPFKNPL---VRSLYDEWLEQPGSEKAKKHVHTEYHPVV 393
+ K LI+ E Y +++ + + P ++ +YD+W+ P S AK +HT+YH +
Sbjct: 424 REQKLLIEQSEQKYYQDLSIQSYEQLPSTLEIKDIYDQWMNGPFSLDAKTKLHTQYHMIE 483
Query: 394 KSITAQLHNW 403
KS A W
Sbjct: 484 KSKNALSIKW 493
>gi|150387423|sp|A2RRV9.1|NARFL_DANRE RecName: Full=Cytosolic Fe-S cluster assembly factor narfl;
AltName: Full=Nuclear prelamin A recognition factor-like
protein
gi|124297681|gb|AAI31875.1| Zgc:158422 [Danio rerio]
Length = 411
Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 192/379 (50%), Positives = 257/379 (67%), Gaps = 20/379 (5%)
Query: 26 PQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQ 85
PQSRASLA H+GI +V +KLT+FLK LGV +FDT+ SR +LIE+ EF+ R+ Q +
Sbjct: 52 PQSRASLAAHYGIGSSEVARKLTSFLKHLGVHHVFDTAFSRSFSLIESQREFLQRFSQ-R 110
Query: 86 ESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLG 145
E+D + +LPML+SACPGWICYAEK G +ILPYIS+ +SPQQ +G+ +K + + G
Sbjct: 111 EADKK----ALPMLASACPGWICYAEKTHGEFILPYISTTRSPQQIMGSLVKGYFASQKG 166
Query: 146 FRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI 205
P IYHVTVMPCYDKKLEA+R DF S+ ET EVD V+T+GEVL ++
Sbjct: 167 VSPQMIYHVTVMPCYDKKLEASRPDFYL---SEHETR--------EVDCVITSGEVLKML 215
Query: 206 QLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHL 264
+ + V+ ++ +PLD M +NV E L G AGS SGGY +++HAAK LFG ++ L
Sbjct: 216 EEEKVSLRDVQPAPLDTMFSNVCGE-ELLGHAGSGSGGYLHHIYKHAAKQLFGVDVD-EL 273
Query: 265 EFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGC 324
+KT++N DF+EV LE +G+ LLKFA YGF+N+QN+V+K+K K Y FVEVMACPSGC
Sbjct: 274 TYKTMKNKDFQEVTLEKDGQVLLKFAAVYGFRNIQNLVQKLKRGKSPYHFVEVMACPSGC 333
Query: 325 LNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKH 384
LNGGGQ+KP QS KEL++ +E +Y + + P + V LY WLE G EKA++
Sbjct: 334 LNGGGQLKPSADQSNKELLQQVEEVY-RSEHPSVPEDDSQVAELYQSWLESVGEEKARQL 392
Query: 385 VHTEYHPVVKSITAQLHNW 403
+HT+YH V K+ W
Sbjct: 393 LHTQYHAVEKTANGLSIKW 411
>gi|326515148|dbj|BAK03487.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 256
Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 177/258 (68%), Positives = 222/258 (86%), Gaps = 10/258 (3%)
Query: 147 RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ 206
RP ++YHVTVMPCYDKKLEA R DFVF ++ +E T EVDSVLTTGEVLDLIQ
Sbjct: 8 RPYDVYHVTVMPCYDKKLEAVRGDFVFSVEEKEVT---------EVDSVLTTGEVLDLIQ 58
Query: 207 LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 266
K+V+F+ +EESPLD++LTNVDD+GHLYGV+G SGGYAET+FR+AA+ LF + IEG L+F
Sbjct: 59 SKSVDFKTMEESPLDRLLTNVDDDGHLYGVSGGSGGYAETIFRYAARALFNREIEGPLDF 118
Query: 267 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 326
K +RNSDFREV LEVEG+ +LKFALCYGF+NLQNIVRKVKM KC+YQF+EVMACPSGCLN
Sbjct: 119 KILRNSDFREVTLEVEGRPVLKFALCYGFRNLQNIVRKVKMGKCEYQFIEVMACPSGCLN 178
Query: 327 GGGQIKPKPGQSPKELIKTLETIYLENV-MLADPFKNPLVRSLYDEWLEQPGSEKAKKHV 385
GGGQIKP GQSPK+LIK LE +Y+++V ++++PF NP+ ++LYD+WL +PGS+ AK+++
Sbjct: 179 GGGQIKPAKGQSPKDLIKLLEDVYMQDVSIISNPFDNPIAKTLYDDWLVEPGSDNAKRYL 238
Query: 386 HTEYHPVVKSITAQLHNW 403
HT+YHPVVKS+T+QL NW
Sbjct: 239 HTQYHPVVKSVTSQLQNW 256
>gi|217035123|ref|NP_001074460.2| cytosolic Fe-S cluster assembly factor narfl [Danio rerio]
Length = 477
Score = 367 bits (941), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 191/379 (50%), Positives = 253/379 (66%), Gaps = 20/379 (5%)
Query: 26 PQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQ 85
PQSRASLA H+GI +V +KLT+FLK LGV +FDT+ SR +LIE+ EF+ R+ Q
Sbjct: 118 PQSRASLAAHYGIGSSEVARKLTSFLKHLGVHHVFDTAFSRSFSLIESQREFLQRFSQR- 176
Query: 86 ESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLG 145
E +LPML+SACPGWICYAEK G +ILPYIS+ +SPQQ +G+ +K + + G
Sbjct: 177 ----EADKKALPMLASACPGWICYAEKTHGEFILPYISTTRSPQQIMGSLVKGYFASQKG 232
Query: 146 FRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI 205
P IYHVTVMPCYDKKLEA+R DF S+ ET EVD V+T+GEVL ++
Sbjct: 233 VSPQMIYHVTVMPCYDKKLEASRPDFYL---SEHETR--------EVDCVITSGEVLKML 281
Query: 206 QLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHL 264
+ + V+ ++ +PLD M +NV E L G AGS SGGY +++HAAK LFG ++ L
Sbjct: 282 EEEKVSLRDVQPAPLDTMFSNVCGE-ELLGHAGSGSGGYLHHIYKHAAKQLFGVDVD-EL 339
Query: 265 EFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGC 324
+KT++N DF+EV LE +G+ LLKFA YGF+N+QN+V+K+K K Y FVEVMACPSGC
Sbjct: 340 TYKTMKNKDFQEVTLEKDGQVLLKFAAVYGFRNIQNLVQKLKRGKSPYHFVEVMACPSGC 399
Query: 325 LNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKH 384
LNGGGQ+KP QS KEL++ +E +Y + + P + V LY WLE G EKA++
Sbjct: 400 LNGGGQLKPSADQSNKELLQQVEEVY-RSEHPSVPEDDSQVAELYQSWLESVGEEKARQL 458
Query: 385 VHTEYHPVVKSITAQLHNW 403
+HT+YH V K+ W
Sbjct: 459 LHTQYHAVEKTANGLSIKW 477
>gi|348585433|ref|XP_003478476.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like [Cavia
porcellus]
Length = 476
Score = 366 bits (940), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 187/391 (47%), Positives = 257/391 (65%), Gaps = 23/391 (5%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
++ + V++S+SPQSRASLA F +SP KKLT+F K +G +FDT+ SR+ TL+E+
Sbjct: 107 DQQRLVVLSISPQSRASLAARFQLSPTDTAKKLTSFFKKIGAHFVFDTTFSRNFTLLESQ 166
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
EFI R+++ +S +LP+L+S+CPGWICYAEK GS+ILPYIS+ +SPQQ +G+
Sbjct: 167 REFIQRFREQTDS-----RKALPVLASSCPGWICYAEKTHGSFILPYISTARSPQQVMGS 221
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
+K Q+ PD+IYH+TVMPCYDKKLEA+R DF +QE RD VD
Sbjct: 222 LVKDFFAQQQNLTPDKIYHITVMPCYDKKLEASRSDFF----NQEYQTRD-------VDC 270
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
VLTTGEV L++ + V+ LE +PLD + + + E G SGGY E VFRHAA+
Sbjct: 271 VLTTGEVFRLLEEEGVSLPELEPAPLDSLTSTMSVEELTNHRGGGSGGYLEHVFRHAAQE 330
Query: 255 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
LFG + + + +RN DF+EV LE EG+ LL+FA+ YGF+N+QN+V+K+K +C Y +
Sbjct: 331 LFGIHV-AEVTYTPVRNKDFQEVTLEKEGQVLLRFAMAYGFRNIQNLVQKLKRGRCPYHY 389
Query: 315 VEVMACPSGCLNGGGQIKPK--PGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
VEVMACPSGCLNGGGQ+K PG KEL++ +E +Y + + P P VR LY W
Sbjct: 390 VEVMACPSGCLNGGGQLKATDVPG---KELLQQVERLY-SMIRVEAPEDAPGVRELYQHW 445
Query: 373 LEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
L+ GSE+A +HT+YH V K+ + W
Sbjct: 446 LQGEGSEQASHLLHTQYHAVEKASSGLNIRW 476
>gi|432868376|ref|XP_004071507.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
isoform 1 [Oryzias latipes]
Length = 475
Score = 364 bits (934), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 190/409 (46%), Positives = 261/409 (63%), Gaps = 24/409 (5%)
Query: 1 MLEKQSLDEFLSNI--NKG----KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL 54
++ +QS +E L + NKG K V++S+SPQSRASLA HFGIS + ++LT+FLK+L
Sbjct: 85 LITQQSPEELLKVLRNNKGAAEQKTVVVSVSPQSRASLAAHFGISSSEAGRRLTSFLKNL 144
Query: 55 GVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQL 114
GV +FDTS SR +L+E+ EF+ R+++ + N +LPML+SACPGWICYAEK
Sbjct: 145 GVHYVFDTSFSRTFSLLESQREFVERFQRKGQD-----NKALPMLTSACPGWICYAEKTH 199
Query: 115 GSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQ 174
G YILPYIS+ +SPQQ +G+ +K H +K G P +IYHV VMPC+DKKLEA+R DF
Sbjct: 200 GEYILPYISTTRSPQQMMGSLVKSHFAEKQGLSPQQIYHVAVMPCFDKKLEASRSDFFMN 259
Query: 175 LDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLY 234
E EVD V+T+GEV +++ ++ +E LD M ++V + L
Sbjct: 260 -----------KAETREVDCVITSGEVQKMLEEHHISLNDVEPGTLDSMFSSVCGDELLS 308
Query: 235 GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYG 294
SGGY VF +AAK LFG+ ++ L +KT+RN DF+EV LE +G+ LL FA YG
Sbjct: 309 HAGSGSGGYLHHVFTYAAKQLFGEEVK-ELTYKTLRNKDFQEVRLEKDGEVLLCFAATYG 367
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV 354
F+N+QN+V+K+K K Y FVEVMACPSGCLNGGGQIK GQ+ KEL++ +E +Y E
Sbjct: 368 FRNIQNLVQKLKRGKSLYHFVEVMACPSGCLNGGGQIKAAAGQNQKELLQKVEELYKEER 427
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
L P + V +Y WL G ++A++ + T+YH V K W
Sbjct: 428 PLL-PEDDTRVAEIYQTWLHGVGEDRARELLRTQYHAVEKMTNGLTIKW 475
>gi|327280139|ref|XP_003224811.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Anolis carolinensis]
Length = 498
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 192/412 (46%), Positives = 275/412 (66%), Gaps = 28/412 (6%)
Query: 1 MLEKQSLDEFLSNINKGKA--------VIISLSPQSRASLAEHFGISPLQVFKKLTTFLK 52
++ +QS +E L ++ K V++S+SPQSRASLA F ++PL KKLT F K
Sbjct: 106 LVAQQSHEELLRVLDANKTLEPASRKLVVVSVSPQSRASLAAKFQLTPLDTAKKLTAFFK 165
Query: 53 SLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEK 112
+LGV +FDT+ SR+ +LIE+ EF+ R+++ E + +LPML++ACPGWICYAEK
Sbjct: 166 TLGVDFVFDTTFSRNFSLIESQREFVQRFRRRTEDKE-----ALPMLAAACPGWICYAEK 220
Query: 113 QLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFV 172
GS+ILPYIS+ KSPQQ +G+ +K H ++ P +IYHV VMPCYDKKLEA+R DF
Sbjct: 221 THGSFILPYISTAKSPQQVMGSLVKSHFAKQQNVAPSQIYHVAVMPCYDKKLEASRPDFF 280
Query: 173 FQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGH 232
QE R EVD V+TTGEVL L++ + + ++ +PLD + ++ ++
Sbjct: 281 L----QEHQTR-------EVDCVITTGEVLKLLEQEGGSLSEVDSAPLDAIFSDPSEDRL 329
Query: 233 L-YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFAL 291
L G SGGY E +++HAAK LFG +E + +KT++N DF+EVALE +GKTLL FAL
Sbjct: 330 LTGHSGGGSGGYLEHIYKHAAKELFGVQVE-EIRYKTLKNKDFQEVALEKDGKTLLLFAL 388
Query: 292 CYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL 351
YGF+N+QN+V+K+K K Y ++EVMACPSGCLNGGGQIK + G++ K+L++ +E++Y
Sbjct: 389 AYGFRNIQNVVQKLKRGKSPYHYIEVMACPSGCLNGGGQIKAE-GEASKDLLQEVESVY- 446
Query: 352 ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
E+V DP N V LY++WL P E+ ++ +HT+YH V ++ T W
Sbjct: 447 ESVPPEDPETNRTVADLYEQWLGGPSKEQTREALHTQYHAVERANTGFGIKW 498
>gi|348537868|ref|XP_003456415.1| PREDICTED: cytosolic Fe-S cluster assembly factor narfl-like
isoform 1 [Oreochromis niloticus]
Length = 477
Score = 361 bits (926), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 182/394 (46%), Positives = 255/394 (64%), Gaps = 20/394 (5%)
Query: 11 LSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTL 70
++N + K V++S+SPQ+RASLA H+ +S + ++LT+F K LGV +FDTS SR +L
Sbjct: 103 VANETEQKTVVVSVSPQARASLAAHYNLSSSEAGRRLTSFFKGLGVHHVFDTSFSRTFSL 162
Query: 71 IEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 130
+E+ EF+ R+++ Q+ + +LPML+SACPGWICYAEK G YILPYIS+ +SPQQ
Sbjct: 163 LESQREFVERFQRKQQD-----SKALPMLTSACPGWICYAEKTHGEYILPYISTTRSPQQ 217
Query: 131 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 190
+G+ +K + + G P +IYHV VMPC+DKKLEA+R DF E
Sbjct: 218 MMGSLVKSYFAGQQGLSPQQIYHVAVMPCFDKKLEASRSDFYLT-----------NAETR 266
Query: 191 EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH 250
EVD V+T+GEVL +++ + V+ LE + D M ++ + L SGGY VF +
Sbjct: 267 EVDCVITSGEVLKMLEEENVSLNDLESAAPDTMFSSFCGDEFLSHAGSGSGGYLHHVFTY 326
Query: 251 AAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
AAK LFG+ ++ +L +KT+RN DF+EV+LE +G LL FA YGF+N+QN+V+K+K K
Sbjct: 327 AAKHLFGEEVK-NLTYKTLRNKDFQEVSLEKDGVVLLCFASAYGFRNIQNLVQKLKRGKS 385
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIY-LENVMLADPFKNPLVRSLY 369
Y FVEVMACPSGCLNGGGQ+KP GQ+ KEL++ +E +Y E +L P + V LY
Sbjct: 386 PYHFVEVMACPSGCLNGGGQVKPSTGQNQKELLQKVEDLYKAERPLL--PEDDARVAELY 443
Query: 370 DEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
WL G E+AK+ +HT+YH V K W
Sbjct: 444 QSWLNSVGDERAKELLHTQYHTVEKMTNGLTMKW 477
>gi|348537870|ref|XP_003456416.1| PREDICTED: cytosolic Fe-S cluster assembly factor narfl-like
isoform 2 [Oreochromis niloticus]
Length = 411
Score = 361 bits (926), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 182/394 (46%), Positives = 255/394 (64%), Gaps = 20/394 (5%)
Query: 11 LSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTL 70
++N + K V++S+SPQ+RASLA H+ +S + ++LT+F K LGV +FDTS SR +L
Sbjct: 37 VANETEQKTVVVSVSPQARASLAAHYNLSSSEAGRRLTSFFKGLGVHHVFDTSFSRTFSL 96
Query: 71 IEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 130
+E+ EF+ R+++ Q+ + +LPML+SACPGWICYAEK G YILPYIS+ +SPQQ
Sbjct: 97 LESQREFVERFQRKQQD-----SKALPMLTSACPGWICYAEKTHGEYILPYISTTRSPQQ 151
Query: 131 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 190
+G+ +K + + G P +IYHV VMPC+DKKLEA+R DF E
Sbjct: 152 MMGSLVKSYFAGQQGLSPQQIYHVAVMPCFDKKLEASRSDFYLT-----------NAETR 200
Query: 191 EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH 250
EVD V+T+GEVL +++ + V+ LE + D M ++ + L SGGY VF +
Sbjct: 201 EVDCVITSGEVLKMLEEENVSLNDLESAAPDTMFSSFCGDEFLSHAGSGSGGYLHHVFTY 260
Query: 251 AAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
AAK LFG+ ++ +L +KT+RN DF+EV+LE +G LL FA YGF+N+QN+V+K+K K
Sbjct: 261 AAKHLFGEEVK-NLTYKTLRNKDFQEVSLEKDGVVLLCFASAYGFRNIQNLVQKLKRGKS 319
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIY-LENVMLADPFKNPLVRSLY 369
Y FVEVMACPSGCLNGGGQ+KP GQ+ KEL++ +E +Y E +L P + V LY
Sbjct: 320 PYHFVEVMACPSGCLNGGGQVKPSTGQNQKELLQKVEDLYKAERPLL--PEDDARVAELY 377
Query: 370 DEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
WL G E+AK+ +HT+YH V K W
Sbjct: 378 QSWLNSVGDERAKELLHTQYHTVEKMTNGLTMKW 411
>gi|431906733|gb|ELK10854.1| Cytosolic Fe-S cluster assembly factor NARFL [Pteropus alecto]
Length = 512
Score = 360 bits (925), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 185/386 (47%), Positives = 253/386 (65%), Gaps = 19/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K V+IS+SPQSRASLA F ++P +KLT F K LG +FDT+ SR+ +L+E+ EF
Sbjct: 146 KLVVISVSPQSRASLAVRFQMNPTDTARKLTAFFKKLGAHYVFDTAFSRNFSLLESQREF 205
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R++ +S +LP+L+SACPGWICYAEK GS I+PYIS+ +SPQQ +G+ +K
Sbjct: 206 VRRFRGQADS-----KQALPVLTSACPGWICYAEKTHGSAIIPYISTARSPQQVMGSLVK 260
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE+ RD VD V+T
Sbjct: 261 DFFAQQQHVTPDKIYHVTVMPCYDKKLEASRPDFF----NQEQQTRD-------VDCVVT 309
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV L++ + V+ LE +PLD + ++V + G SGGY E VFRHAA+ LFG
Sbjct: 310 TGEVFKLLEEEGVSLSELEPAPLDGLYSSVSTQEPTSHRGGGSGGYLEHVFRHAAQELFG 369
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
++ + ++ +RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+K+K +C Y +VEV
Sbjct: 370 IHVD-EVTYRPLRNKDFQEVTLESEGRVLLHFAVAYGFRNIQNLVQKLKRGRCPYHYVEV 428
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACPSGCLNGGGQ+K P KEL++ +E +Y V +P P V+ LY WL G
Sbjct: 429 MACPSGCLNGGGQLK-APDTPSKELLQHVERLY-SMVRTEEPEDVPGVQELYRHWLHGEG 486
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
SE+A + +HT YH V K+ + W
Sbjct: 487 SEQASRLLHTSYHAVEKANSGLSIRW 512
>gi|432868378|ref|XP_004071508.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
isoform 2 [Oryzias latipes]
Length = 482
Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 183/386 (47%), Positives = 249/386 (64%), Gaps = 18/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K V++S+SPQSRASLA HFGIS + ++LT+FLK+LGV +FDTS SR +L+E+ EF
Sbjct: 115 KTVVVSVSPQSRASLAAHFGISSSEAGRRLTSFLKNLGVHYVFDTSFSRTFSLLESQREF 174
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R+++ + N +LPML+SACPGWICYAEK G YILPYIS+ +SPQQ +G+ +K
Sbjct: 175 VERFQRKGQD-----NKALPMLTSACPGWICYAEKTHGEYILPYISTTRSPQQMMGSLVK 229
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
H +K G P +IYHV VMPC+DKKLEA+R DF E EVD V+T
Sbjct: 230 SHFAEKQGLSPQQIYHVAVMPCFDKKLEASRSDFFMN-----------KAETREVDCVIT 278
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
+GEV +++ ++ +E LD M ++V + L SGGY VF +AAK LFG
Sbjct: 279 SGEVQKMLEEHHISLNDVEPGTLDSMFSSVCGDELLSHAGSGSGGYLHHVFTYAAKQLFG 338
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+ ++ L +KT+RN DF+EV LE +G+ LL FA YGF+N+QN+V+K+K K Y FVEV
Sbjct: 339 EEVK-ELTYKTLRNKDFQEVRLEKDGEVLLCFAATYGFRNIQNLVQKLKRGKSLYHFVEV 397
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACPSGCLNGGGQIK GQ+ KEL++ +E +Y E L P + V +Y WL G
Sbjct: 398 MACPSGCLNGGGQIKAAAGQNQKELLQKVEELYKEERPLL-PEDDTRVAEIYQTWLHGVG 456
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
++A++ + T+YH V K W
Sbjct: 457 EDRARELLRTQYHAVEKMTNGLTIKW 482
>gi|260801253|ref|XP_002595510.1| hypothetical protein BRAFLDRAFT_118961 [Branchiostoma floridae]
gi|229280757|gb|EEN51522.1| hypothetical protein BRAFLDRAFT_118961 [Branchiostoma floridae]
Length = 479
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 185/390 (47%), Positives = 259/390 (66%), Gaps = 19/390 (4%)
Query: 14 INKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
I++ K V+IS+SPQSR SLA + +S L+ +KLT F K LG +FDT+ +RD +L E+
Sbjct: 109 ISQEKLVVISISPQSRTSLAARYSLSSLETARKLTGFFKQLGAHYVFDTTFTRDFSLQES 168
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
EF+ R++ + S + LPML+SACPGWICYAEK G Y+LPYIS+ KSPQQ +G
Sbjct: 169 QREFVQRFQGNDAS------APLPMLASACPGWICYAEKTHGEYVLPYISTTKSPQQVMG 222
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+ +K H ++ G PD+IYHVTVMPC+DKKLEA+REDF + YR +VD
Sbjct: 223 SLVKDHFSKQQGKPPDQIYHVTVMPCFDKKLEASREDFY------NDVYRTR-----DVD 271
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+T+GEV +++ + ++ + + LD M +++ L G SGGY E +FR+AA+
Sbjct: 272 CVITSGEVEAMLEKEGISLVDVTPADLDTMFSSMSGAELLSHSGGGSGGYLEHIFRYAAR 331
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
LF + ++ + +KT+RN DF+EV LEVEGK +LKFAL YGF+N+QN+V+K+K K Y
Sbjct: 332 ELFEQDVQS-VNYKTLRNKDFKEVTLEVEGKVVLKFALAYGFRNIQNMVQKIKRGKSPYH 390
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWL 373
FVEVMACPSGCLNGGGQ++ ++ K+L+ E +YL + + P KNP + SLY EWL
Sbjct: 391 FVEVMACPSGCLNGGGQVRIGDKEADKDLLTKAEELYLA-LPVRTPEKNPRLESLYSEWL 449
Query: 374 EQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
+EKA++ +HT YHPV K A W
Sbjct: 450 SGRDNEKARRMLHTTYHPVEKMTNALAIKW 479
>gi|126335307|ref|XP_001365922.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL
[Monodelphis domestica]
Length = 476
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 190/389 (48%), Positives = 261/389 (67%), Gaps = 19/389 (4%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
N+ K V+IS+SPQSRASLA F ++ L KKLT F K+ GV +FDT+ SR+ +L+E+
Sbjct: 107 NQQKLVVISVSPQSRASLAAKFQLTLLDTAKKLTAFFKNRGVHYVFDTTFSRNFSLLESQ 166
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
EF+ R+++ ES +LPML+SACPGWICYAEK GS+I+PYIS+ KSPQQ +G+
Sbjct: 167 REFVQRFRRRTES-----KQALPMLASACPGWICYAEKTHGSFIIPYISTAKSPQQVMGS 221
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
IK H Q+ PD+IYHVTVMPCYDKKLEA+R DF +Q+ RD VD
Sbjct: 222 LIKDHFAQQQHLTPDKIYHVTVMPCYDKKLEASRSDFF----NQQYQTRD-------VDC 270
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V+TTGE+L L++ + V+ ++ +PLD ++V E L G SGGY E +FRHAA+
Sbjct: 271 VITTGEILRLLEQEGVSLSDVDPAPLDAEFSSVSGEELLGHHGGGSGGYLEHIFRHAAQE 330
Query: 255 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
LFG ++ + +K ++N DF+EV LE +G LL FAL YGF+N+QN+V+K+K K Y +
Sbjct: 331 LFGMQVD-EITYKPLKNKDFQEVTLEKDGTVLLHFALAYGFRNIQNLVQKLKRGKSPYHY 389
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLE 374
VEVMACPSGCLNGGGQIK + S K+L++ +E +Y E V + P + ++ LY++WL+
Sbjct: 390 VEVMACPSGCLNGGGQIKAE-AISSKDLLQQVEKLY-EMVKIVVPDSSTEIKELYEQWLK 447
Query: 375 QPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
SE+A K +HT+YH V K T W
Sbjct: 448 GEDSEEAGKTLHTQYHAVEKMSTGFNIKW 476
>gi|118097948|ref|XP_414836.2| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL [Gallus
gallus]
Length = 476
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 192/403 (47%), Positives = 278/403 (68%), Gaps = 27/403 (6%)
Query: 1 MLEKQSLDEFLSNI--------NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLK 52
++ +QS +EF + ++ K V++S+SPQSRASLA +S L+ KKLT FLK
Sbjct: 85 LITQQSHEEFYKTLAFNKTAAPSEQKLVVVSVSPQSRASLAAKCKMSVLETAKKLTAFLK 144
Query: 53 SLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEK 112
S GV +FDT+ SR+ +L+E+ EF+ R+++ +S+D+++ LPML+SACPGWICYAEK
Sbjct: 145 SQGVHYVFDTTFSRNFSLLESQKEFVKRFRK--QSEDKKA---LPMLASACPGWICYAEK 199
Query: 113 QLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFV 172
GS+I+PYIS+ KSPQQ +G+ IK H ++ P++IYHVTVMPCYDKKLEA+R DF
Sbjct: 200 THGSFIIPYISTTKSPQQIMGSLIKGHFAEQQHLTPNKIYHVTVMPCYDKKLEASRPDFF 259
Query: 173 FQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGH 232
+QE RD VD V+TTGEVL L++ + V+ ++ +PLD M ++ +E
Sbjct: 260 ----NQEYQTRD-------VDCVITTGEVLKLLEQERVSLSDVDPAPLDTMFSSATEEEL 308
Query: 233 LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALC 292
G SGGY E ++++AAK LFG ++ +++K ++N DF+EV LE +G LL+FAL
Sbjct: 309 TGHSGGGSGGYLEHIYKYAAKELFGIEVDT-IQYKPLKNKDFQEVTLEKDGVVLLQFALA 367
Query: 293 YGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE 352
YGF+N+QN+V+K+K K Y +VEVMACPSGCLNGGGQIK + +S K+ ++ +E +Y E
Sbjct: 368 YGFRNIQNLVQKLKRGKSPYHYVEVMACPSGCLNGGGQIKVE-SESSKDWLQQVEKLY-E 425
Query: 353 NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKS 395
++ P +N V +LY++WL P SEKA+K +HTEYH V K+
Sbjct: 426 SLKTETPEENWTVTALYEQWLGGPESEKARKALHTEYHAVEKA 468
>gi|395515647|ref|XP_003762012.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL
[Sarcophilus harrisii]
Length = 476
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 195/411 (47%), Positives = 269/411 (65%), Gaps = 27/411 (6%)
Query: 1 MLEKQSLDEF--LSNINK------GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLK 52
++ +QS +E + N NK K V+IS+SPQSRASLA F ++PL KKLT F K
Sbjct: 85 LITQQSHEELYKILNFNKIAEPSQQKLVVISVSPQSRASLAARFQLTPLDTAKKLTAFFK 144
Query: 53 SLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEK 112
+ GV +FDT+ SR+ +L+E+ EF+ R+++ ES +LPML+SACPGWICYAEK
Sbjct: 145 NRGVHYVFDTAFSRNFSLLESQREFVQRFRRRTES-----KQALPMLASACPGWICYAEK 199
Query: 113 QLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFV 172
GS+I+PYIS+ KSPQQ +G+ IK H +K PD+IYHVTVMPCYDKKLEA+R DF
Sbjct: 200 THGSFIIPYISTAKSPQQVMGSLIKDHFAKKQHLTPDKIYHVTVMPCYDKKLEASRPDFF 259
Query: 173 FQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGH 232
+QE RD VD V+TTGE+L L++ + ++ ++ +PLD + V E
Sbjct: 260 ----NQEYQTRD-------VDCVITTGEILRLLEQEGISLSDVDPAPLDAEFSFVSGEEL 308
Query: 233 LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALC 292
G SGGY E +FR+AA+ LFG ++G + +K ++N DF+EV LE +G LL FAL
Sbjct: 309 FGHRGGGSGGYLEHIFRYAAQELFGIHVDG-ITYKPLKNKDFQEVMLEKDGTVLLHFALA 367
Query: 293 YGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE 352
YGF+N+QN+V+K+K K Y +VEVMACPSGCLNGGGQIK + S K+L++ +E +Y E
Sbjct: 368 YGFRNIQNLVQKLKKGKSPYHYVEVMACPSGCLNGGGQIKAE-AVSSKDLLQQVEKLY-E 425
Query: 353 NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
V P +P ++ LY++WL+ SE+A +HT+YH V K T W
Sbjct: 426 MVRTVMPETSPEIKELYEQWLKGKDSEEAGTTLHTQYHAVEKMNTGFNIKW 476
>gi|224070248|ref|XP_002188515.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL
[Taeniopygia guttata]
Length = 475
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 192/386 (49%), Positives = 261/386 (67%), Gaps = 20/386 (5%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K V++S+SPQSRASLA + L+ +KLTTFLK LGV +FDT+ SR+ +L+E+ EF
Sbjct: 110 KLVVVSVSPQSRASLAARCKLGLLETAQKLTTFLKGLGVHHVFDTTFSRNFSLLESQQEF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R+ + E +LPML+SACPGWICYAEK GS+I+P+IS+ KSPQQ +G+ +K
Sbjct: 170 VRRFHKQAED-----KKALPMLASACPGWICYAEKTHGSFIIPHISTTKSPQQVMGSLVK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+ ++ PD IYHVTVMPCYDKKLEA+R DF SQE RD VD V+T
Sbjct: 225 GYFAEQQHLPPDRIYHVTVMPCYDKKLEASRPDFF----SQEYQTRD-------VDCVIT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEVL L++ + V+ L+ +PLD ML +E G SGGY E +FRHAA+ LFG
Sbjct: 274 TGEVLKLLEQEGVSLSDLDPAPLDTMLGRAAEE-LSSHRGGGSGGYLEHIFRHAARELFG 332
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
V + +K +RN DF+EV LE +G+ LL+FAL YGF+N+QN+V+K+K KC Y +VEV
Sbjct: 333 -VHVASIHYKPLRNKDFQEVTLERDGEVLLQFALAYGFRNIQNLVQKLKRGKCPYHYVEV 391
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACPSGCLNGGGQIK + G+S KE ++ +E +Y E++ P +N VR LY+ WL G
Sbjct: 392 MACPSGCLNGGGQIKLE-GESSKEELQQVERLY-ESLRAEIPEENQAVRELYEHWLGGWG 449
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
S++A + +HT+YH V ++ +A W
Sbjct: 450 SDRALQVLHTQYHAVERASSALSIKW 475
>gi|47218040|emb|CAG11445.1| unnamed protein product [Tetraodon nigroviridis]
Length = 479
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 190/414 (45%), Positives = 265/414 (64%), Gaps = 30/414 (7%)
Query: 1 MLEKQSLDEFLSNINKGKA-------VIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
++ +QS +E + KA V++S+SPQSRAS+A +G+S + ++LT+F K
Sbjct: 85 LITQQSHEELFRVLQHNKASETEKKVVVVSVSPQSRASIAARYGLSSTEAGRRLTSFFKG 144
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPG---WICYA 110
LGV +FDT+ +R +L+E+ EF+ R+++ E+ N SLPM++SACPG WICYA
Sbjct: 145 LGVHHVFDTTFTRTFSLLESQREFVERFQRK-----EQDNKSLPMMTSACPGTPGWICYA 199
Query: 111 EKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARED 170
EK G ILPYIS+ +SPQQ +G+ +K + ++ G P +IYHV VMPCYDKKLEA+R D
Sbjct: 200 EKTHGDLILPYISTTRSPQQMMGSLVKGYFAEQQGLSPQQIYHVAVMPCYDKKLEASRSD 259
Query: 171 FVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDE 230
F + +E + EVD V+T+GEV +++ K V+ +E +PLD + +NV+ +
Sbjct: 260 F----------HMNEA-QTREVDCVITSGEVQLMLEEKNVSLSDVEPAPLDTVFSNVNGD 308
Query: 231 GHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFA 290
L SSGGY VF +AAK LFG+ ++ L +KT++N DF+EV LE +G LL FA
Sbjct: 309 EFLSHAGSSSGGYLHHVFTYAAKHLFGEEVK-ELTYKTLKNKDFQEVTLEKDGVVLLCFA 367
Query: 291 LCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIY 350
YGF+N+QN+V+K K KC Y FVEVMACPSGCLNGGGQ+K PGQ+PKEL++ +E IY
Sbjct: 368 STYGFRNIQNLVQKFKRGKCPYHFVEVMACPSGCLNGGGQLKALPGQNPKELLQKVEEIY 427
Query: 351 -LENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
E M+ P N V LY WL G E+AK+ +HT YH V K W
Sbjct: 428 RAERSMV--PEDNTRVAELYHSWLHSVGEERAKELLHTRYHTVEKMKNGLTMKW 479
>gi|11968051|ref|NP_071938.1| cytosolic Fe-S cluster assembly factor NARFL [Homo sapiens]
gi|74733617|sp|Q9H6Q4.1|NARFL_HUMAN RecName: Full=Cytosolic Fe-S cluster assembly factor NARFL;
AltName: Full=Iron-only hydrogenase-like protein 1;
Short=IOP1; AltName: Full=Nuclear prelamin A recognition
factor-like protein; AltName: Full=Protein related to
Narf
gi|10438222|dbj|BAB15199.1| unnamed protein product [Homo sapiens]
gi|20988037|gb|AAH30248.1| Nuclear prelamin A recognition factor-like [Homo sapiens]
gi|22654872|gb|AAM98737.1| protein related to Narf [Homo sapiens]
gi|119606128|gb|EAW85722.1| nuclear prelamin A recognition factor-like, isoform CRA_a [Homo
sapiens]
Length = 476
Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 181/386 (46%), Positives = 250/386 (64%), Gaps = 19/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V++S+SPQSRASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF
Sbjct: 110 RLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R++ + +LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ +G+ +K
Sbjct: 170 VRRFRGQADC-----RQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLT
Sbjct: 225 DFFAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV L++ + V+ LE +PLD + + E G SGGY E VFRHAA+ LFG
Sbjct: 274 TGEVFRLLEEEGVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFG 333
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+ + +K +RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEV
Sbjct: 334 IHV-AEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEV 392
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACPSGCLNGGGQ++ P + +EL++ +E +Y V P P V+ LY WL+
Sbjct: 393 MACPSGCLNGGGQLQ-APDRPSRELLQHVERLY-GMVRAEAPEDAPGVQELYTHWLQGTD 450
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
SE A + +HT+YH V K+ T W
Sbjct: 451 SECAGRLLHTQYHAVEKASTGLGIRW 476
>gi|61557212|ref|NP_001013201.1| cytosolic Fe-S cluster assembly factor NARFL [Rattus norvegicus]
gi|81882576|sp|Q5BK18.1|NARFL_RAT RecName: Full=Cytosolic Fe-S cluster assembly factor NARFL;
AltName: Full=Iron-only hydrogenase-like protein 1;
Short=IOP1; AltName: Full=Nuclear prelamin A recognition
factor-like protein
gi|60688432|gb|AAH91240.1| Nuclear prelamin A recognition factor-like [Rattus norvegicus]
gi|149052134|gb|EDM03951.1| nuclear prelamin A recognition factor-like [Rattus norvegicus]
Length = 476
Score = 354 bits (908), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 182/377 (48%), Positives = 248/377 (65%), Gaps = 19/377 (5%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V++S+SPQSRASLA F + +KLT+F K +GV +FDT+ +R+ +L+E+ EF
Sbjct: 110 RLVVVSVSPQSRASLAARFQLDSTDTARKLTSFFKKIGVHFVFDTAFARNFSLLESQKEF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R+++ S + +LPML+SACPGWICYAEK G++ILPYIS+ +SPQQ +G+ IK
Sbjct: 170 VQRFREQANSRE-----ALPMLASACPGWICYAEKTHGNFILPYISTARSPQQVMGSLIK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLT
Sbjct: 225 DFFAQQQLLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEYQTRD-------VDCVLT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV L++ + V+ LE PLD + +V E G SGGY E VFRHAA+ LFG
Sbjct: 274 TGEVFRLLEEEGVSLSELEPVPLDGLTRSVSAEEPTSHRGGGSGGYLEHVFRHAAQELFG 333
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+ + ++ +RN DF+EV LE EG+ LL+FA+ YGF+N+QN+V+K+K +C Y +VEV
Sbjct: 334 IHV-ADVTYQPMRNKDFQEVTLEREGQVLLRFAVAYGFRNIQNLVQKLKRGRCPYHYVEV 392
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACPSGCLNGGGQ+K P +EL++ +E +Y V P P V+ LY WL+
Sbjct: 393 MACPSGCLNGGGQLK-APDTEGRELLQQVERLY-SMVRTEAPEDAPGVQELYQHWLQGED 450
Query: 378 SEKAKKHVHTEYHPVVK 394
SE+A +HT+YH V K
Sbjct: 451 SERASHLLHTQYHAVEK 467
>gi|325301271|ref|NP_001191684.1| cytosolic Fe-S cluster assembly factor NARFL [Macaca mulatta]
Length = 476
Score = 354 bits (908), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 182/386 (47%), Positives = 250/386 (64%), Gaps = 19/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V++S+SPQSRASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF
Sbjct: 110 RLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R++ + +LP+L+SACPGWICYAEK GS+ILPYIS+ +SPQQ +G+ +K
Sbjct: 170 VRRFRGQADC-----RQALPLLASACPGWICYAEKTHGSFILPYISTARSPQQVMGSLVK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLT
Sbjct: 225 DFFAQQQRLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV L++ + V+ LE +PLD + + E G SGGY E VFRHAA+ LFG
Sbjct: 274 TGEVFRLLEEEDVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFG 333
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+ + +K +RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEV
Sbjct: 334 IHV-AEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEV 392
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACPSGCLNGGGQ++ P + +EL++ +E +Y V P P V+ LY WL+
Sbjct: 393 MACPSGCLNGGGQLQ-APDRPSRELLQHVERLY-GMVRAEMPEDAPGVQELYTHWLQGTD 450
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
SE A + +HT+YH V K+ T W
Sbjct: 451 SECAGRLLHTQYHAVEKANTGLGIRW 476
>gi|10438504|dbj|BAB15261.1| unnamed protein product [Homo sapiens]
gi|119606129|gb|EAW85723.1| nuclear prelamin A recognition factor-like, isoform CRA_b [Homo
sapiens]
gi|193787902|dbj|BAG53105.1| unnamed protein product [Homo sapiens]
Length = 374
Score = 354 bits (908), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 181/393 (46%), Positives = 254/393 (64%), Gaps = 19/393 (4%)
Query: 11 LSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTL 70
++ ++ + V++S+SPQSRASLA F ++P +KLT+F K +GV +FDT+ SR +L
Sbjct: 1 MAAPSQQRLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSL 60
Query: 71 IEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 130
+E+ EF+ R++ + +LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ
Sbjct: 61 LESQREFVRRFRGQADC-----RQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQ 115
Query: 131 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 190
+G+ +K Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD
Sbjct: 116 VMGSLVKDFFAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD------ 165
Query: 191 EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH 250
VD VLTTGEV L++ + V+ LE +PLD + + E G SGGY E VFRH
Sbjct: 166 -VDCVLTTGEVFRLLEEEGVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRH 224
Query: 251 AAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
AA+ LFG + + +K +RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C
Sbjct: 225 AARELFGIHV-AEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRC 283
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYD 370
Y +VEVMACPSGCLNGGGQ++ P + +EL++ +E +Y V P P V+ LY
Sbjct: 284 PYHYVEVMACPSGCLNGGGQLQ-APDRPSRELLQHVERLY-GMVRAEAPEDAPGVQELYT 341
Query: 371 EWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
WL+ SE A + +HT+YH V K+ T W
Sbjct: 342 HWLQGTDSECAGRLLHTQYHAVEKASTGLGIRW 374
>gi|301769629|ref|XP_002920216.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Ailuropoda melanoleuca]
Length = 476
Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 179/386 (46%), Positives = 250/386 (64%), Gaps = 19/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V++S+SPQSRASLA F ++P KKLT F K +GV +FDT+ SR+ +L+E+ EF
Sbjct: 110 RLVVVSVSPQSRASLATRFQLTPTDTAKKLTAFFKKIGVHYVFDTAFSRNFSLLESQREF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R++ S +LP+L+SACPGWICYAEK GS+++PY+S+ +SPQQ +G+ +K
Sbjct: 170 VQRFR-----GQANSTQALPVLTSACPGWICYAEKTHGSFLIPYLSTARSPQQVMGSLVK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD IYHVTVMPCYDKKLEA+R DF SQE RD VD V+T
Sbjct: 225 DFFAQQQRLTPDRIYHVTVMPCYDKKLEASRSDFF----SQEHQTRD-------VDCVVT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV L++ + V+ LE +PLD + + + G SGGY E VF+HAA+ LFG
Sbjct: 274 TGEVFKLLEEEGVSLLELEPAPLDSLCNSASAQEPTSHRGGGSGGYLEHVFQHAARELFG 333
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
++ + ++ +RN DF+EV LE EG+ LL FA YGF+N+QN+V+K++ +C Y +VEV
Sbjct: 334 IHVD-EVTYRPLRNKDFQEVTLEKEGRILLHFAAAYGFRNIQNLVQKLRRGRCPYHYVEV 392
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACP+GCLNGGGQ+K P KEL++ +E +Y V P P V+ LY+ WL+ G
Sbjct: 393 MACPAGCLNGGGQLK-APDAPSKELLQHVEMLY-GMVRTEAPEDAPGVQELYECWLQGEG 450
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
SE+A + +HT YH V K+ + W
Sbjct: 451 SERAGRLLHTGYHAVEKASSGLSIRW 476
>gi|149750886|ref|XP_001496296.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like [Equus
caballus]
Length = 476
Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 182/386 (47%), Positives = 251/386 (65%), Gaps = 19/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V+IS+SPQSRASLA F ++P +KLTTF K LG +FDT+ SR+ +L+E+ EF
Sbjct: 110 RLVVISVSPQSRASLAARFQLNPTDTARKLTTFFKKLGAHYVFDTAFSRNFSLLESQREF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R++ +S +LP+L+SACPGWICYAEK G+ ++P++S+ +SPQQ +G+ +K
Sbjct: 170 VRRFRGQADS-----KQALPVLTSACPGWICYAEKTHGTLLIPHLSTARSPQQVMGSLVK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD+IYHVTVMPCYDKKLEA+R DF SQE RD VD V+T
Sbjct: 225 DFFAQQQRLTPDKIYHVTVMPCYDKKLEASRPDFF----SQEHQTRD-------VDCVIT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV L+Q + V LE +PLD + ++ + G SGGY E VFRHAA+ LFG
Sbjct: 274 TGEVFKLLQEEGVLLSELEPTPLDSLCSSGSAQEPTSHQGGGSGGYLEHVFRHAAQELFG 333
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
V + ++ +RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+K+K +C Y +VEV
Sbjct: 334 -VHVTEVTYRPLRNKDFQEVTLEREGQVLLHFAMAYGFRNIQNLVQKLKRGRCPYHYVEV 392
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACP+GCLNGGGQ+K P + KEL++ +E +Y V P P V+ LY WL+ G
Sbjct: 393 MACPAGCLNGGGQLK-APDTADKELLQHVERLY-SMVRTEVPEDVPGVQELYKRWLQGEG 450
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
SE+A + +HT YH V K+ + W
Sbjct: 451 SEQAGRLLHTSYHAVEKASSGLSIRW 476
>gi|354478815|ref|XP_003501610.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Cricetulus griseus]
gi|344248282|gb|EGW04386.1| Cytosolic Fe-S cluster assembly factor NARFL [Cricetulus griseus]
Length = 476
Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 181/386 (46%), Positives = 252/386 (65%), Gaps = 19/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V++S+SPQSRASLA F + +KLT+F K +GV +FDT+ +R+ +L+E+ EF
Sbjct: 110 RLVVVSVSPQSRASLAARFQLDSSNTARKLTSFFKKIGVHFVFDTTFARNFSLLESQKEF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R++ S + +LPML+SACPGWICYAEK G++ILPYIS+ +SPQQ +G+ +K
Sbjct: 170 VQRFRGQSNSKE-----ALPMLASACPGWICYAEKTHGNFILPYISTARSPQQVMGSLVK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD+IYHVTVMPCYDKKLEA+R DF +Q+ RD VD VLT
Sbjct: 225 DFFAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFF----NQKYQTRD-------VDCVLT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV +++ + V+ LE PLD + +V E G SGGY E VFRHAA+ LFG
Sbjct: 274 TGEVFRMLEEEGVSLLELEPVPLDGLTCSVSAEEPTSHRGGGSGGYLEHVFRHAAQELFG 333
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+ + ++ +RN DF+EV LE EG+ LL+FA+ YGF+N+QN+V+K+K +C Y +VEV
Sbjct: 334 -IHVADVTYQPMRNKDFQEVTLEREGQVLLRFAVAYGFRNIQNLVQKLKRGRCPYHYVEV 392
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACPSGCLNGGGQ+K P +EL++ +E +Y V P P V+ LY WL+ G
Sbjct: 393 MACPSGCLNGGGQLK-APDMQGRELLQQVEKLY-SMVRNEAPEDAPGVQELYQHWLQGEG 450
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
SE+A + +HT+YH V K+ + W
Sbjct: 451 SEQASRLLHTQYHAVEKTNSGISIRW 476
>gi|355709814|gb|EHH31278.1| Nuclear prelamin A recognition factor-like protein [Macaca mulatta]
Length = 476
Score = 353 bits (907), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 181/386 (46%), Positives = 250/386 (64%), Gaps = 19/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V++S+SPQSRASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF
Sbjct: 110 RLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R++ + +LP+L+SACPGWICYAEK GS+ILPYIS+ +SPQQ +G+ +K
Sbjct: 170 VRRFRGQADC-----RQALPLLASACPGWICYAEKTHGSFILPYISTARSPQQVMGSLVK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD+IYH+TVMPCYDKKLEA+R DF +QE RD VD VLT
Sbjct: 225 DFFAQQQRLTPDKIYHITVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV L++ + V+ LE +PLD + + E G SGGY E VFRHAA+ LFG
Sbjct: 274 TGEVFRLLEEEDVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFG 333
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+ + +K +RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEV
Sbjct: 334 IHV-AEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEV 392
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACPSGCLNGGGQ++ P + +EL++ +E +Y V P P V+ LY WL+
Sbjct: 393 MACPSGCLNGGGQLQ-APDRPSRELLQHVERLY-GMVRAEMPEDAPGVQELYTHWLQGTD 450
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
SE A + +HT+YH V K+ T W
Sbjct: 451 SECAGRLLHTQYHAVEKANTGLGIRW 476
>gi|380815604|gb|AFE79676.1| cytosolic Fe-S cluster assembly factor NARFL [Macaca mulatta]
gi|383420789|gb|AFH33608.1| cytosolic Fe-S cluster assembly factor NARFL [Macaca mulatta]
Length = 476
Score = 353 bits (907), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 182/386 (47%), Positives = 250/386 (64%), Gaps = 19/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V++S+SPQSRASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF
Sbjct: 110 RLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R++ + +LP+L+SACPGWICYAEK GS+ILPYIS+ +SPQQ +G+ +K
Sbjct: 170 VRRFRGQADC-----RQALPLLASACPGWICYAEKTHGSFILPYISTARSPQQVMGSLVK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLT
Sbjct: 225 DFFAQQQRLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV L++ + V+ LE +PLD + + E G SGGY E VFRHAA+ LFG
Sbjct: 274 TGEVFRLLEEEDVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFG 333
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+ + +K +RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEV
Sbjct: 334 IHV-AEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEV 392
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACPSGCLNGGGQ++ P + +EL++ +E +Y V P P V+ LY WL+
Sbjct: 393 MACPSGCLNGGGQLQ-APERPSRELLQHVERLY-GMVRAEMPEDAPGVQELYTHWLQGTD 450
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
SE A + +HT+YH V K+ T W
Sbjct: 451 SECAGRLLHTQYHAVEKANTGLGIRW 476
>gi|281341565|gb|EFB17149.1| hypothetical protein PANDA_008943 [Ailuropoda melanoleuca]
Length = 482
Score = 353 bits (907), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 179/386 (46%), Positives = 250/386 (64%), Gaps = 19/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V++S+SPQSRASLA F ++P KKLT F K +GV +FDT+ SR+ +L+E+ EF
Sbjct: 116 RLVVVSVSPQSRASLATRFQLTPTDTAKKLTAFFKKIGVHYVFDTAFSRNFSLLESQREF 175
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R++ S +LP+L+SACPGWICYAEK GS+++PY+S+ +SPQQ +G+ +K
Sbjct: 176 VQRFR-----GQANSTQALPVLTSACPGWICYAEKTHGSFLIPYLSTARSPQQVMGSLVK 230
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD IYHVTVMPCYDKKLEA+R DF SQE RD VD V+T
Sbjct: 231 DFFAQQQRLTPDRIYHVTVMPCYDKKLEASRSDFF----SQEHQTRD-------VDCVVT 279
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV L++ + V+ LE +PLD + + + G SGGY E VF+HAA+ LFG
Sbjct: 280 TGEVFKLLEEEGVSLLELEPAPLDSLCNSASAQEPTSHRGGGSGGYLEHVFQHAARELFG 339
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
++ + ++ +RN DF+EV LE EG+ LL FA YGF+N+QN+V+K++ +C Y +VEV
Sbjct: 340 IHVD-EVTYRPLRNKDFQEVTLEKEGRILLHFAAAYGFRNIQNLVQKLRRGRCPYHYVEV 398
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACP+GCLNGGGQ+K P KEL++ +E +Y V P P V+ LY+ WL+ G
Sbjct: 399 MACPAGCLNGGGQLK-APDAPSKELLQHVEMLY-GMVRTEAPEDAPGVQELYECWLQGEG 456
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
SE+A + +HT YH V K+ + W
Sbjct: 457 SERAGRLLHTGYHAVEKASSGLSIRW 482
>gi|426380599|ref|XP_004056950.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL [Gorilla
gorilla gorilla]
Length = 476
Score = 353 bits (906), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 180/386 (46%), Positives = 250/386 (64%), Gaps = 19/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ +++S+SPQSRASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF
Sbjct: 110 RLIVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R++ + +LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ +G+ +K
Sbjct: 170 VRRFRGQADC-----RQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLT
Sbjct: 225 DFFAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV L++ + V+ LE +PLD + + E G SGGY E VFRHAA+ LFG
Sbjct: 274 TGEVFRLLEEEGVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFG 333
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+ + +K +RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEV
Sbjct: 334 IHV-AEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEV 392
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACPSGCLNGGGQ++ P + +EL++ +E +Y V P P V+ LY WL+
Sbjct: 393 MACPSGCLNGGGQLQ-APDRPSRELLQHVERLY-GMVRAEAPEDAPGVQELYTHWLQGTD 450
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
SE A + +HT+YH V K+ T W
Sbjct: 451 SECAGRLLHTQYHAVEKASTGLGIRW 476
>gi|14336719|gb|AAK61251.1|AE006464_19 Weakly similar to ORF YNL240c [S.cerevisiae] [Homo sapiens]
gi|119606130|gb|EAW85724.1| nuclear prelamin A recognition factor-like, isoform CRA_c [Homo
sapiens]
Length = 525
Score = 353 bits (906), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 181/393 (46%), Positives = 254/393 (64%), Gaps = 19/393 (4%)
Query: 11 LSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTL 70
++ ++ + V++S+SPQSRASLA F ++P +KLT+F K +GV +FDT+ SR +L
Sbjct: 152 MAAPSQQRLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSL 211
Query: 71 IEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 130
+E+ EF+ R++ + +LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ
Sbjct: 212 LESQREFVRRFRGQADC-----RQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQ 266
Query: 131 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 190
+G+ +K Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD
Sbjct: 267 VMGSLVKDFFAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD------ 316
Query: 191 EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH 250
VD VLTTGEV L++ + V+ LE +PLD + + E G SGGY E VFRH
Sbjct: 317 -VDCVLTTGEVFRLLEEEGVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRH 375
Query: 251 AAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
AA+ LFG + + +K +RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C
Sbjct: 376 AARELFGIHV-AEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRC 434
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYD 370
Y +VEVMACPSGCLNGGGQ++ P + +EL++ +E +Y V P P V+ LY
Sbjct: 435 PYHYVEVMACPSGCLNGGGQLQ-APDRPSRELLQHVERLY-GMVRAEAPEDAPGVQELYT 492
Query: 371 EWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
WL+ SE A + +HT+YH V K+ T W
Sbjct: 493 HWLQGTDSECAGRLLHTQYHAVEKASTGLGIRW 525
>gi|351711193|gb|EHB14112.1| Cytosolic Fe-S cluster assembly factor NARFL [Heterocephalus
glaber]
Length = 476
Score = 353 bits (906), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 184/389 (47%), Positives = 256/389 (65%), Gaps = 19/389 (4%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
++ + V++S+SPQSRASLA F +SP +KLT+F K +G +FDT+ SR+ +LIE+
Sbjct: 107 DQQQLVVLSVSPQSRASLAARFQLSPTDTARKLTSFFKKIGAHFVFDTTFSRNFSLIESQ 166
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
EF+ R++ +S +LP+L+SACPGWICYAEK GS+ILPYIS+ +SPQQ +GA
Sbjct: 167 REFVQRFRGQTDS-----RKALPVLASACPGWICYAEKTHGSFILPYISTARSPQQVMGA 221
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
IK Q+ PD+IYH+TVMPCYDKKLEA+R DF +QE RD VD
Sbjct: 222 LIKDFFAQQQHLTPDKIYHITVMPCYDKKLEASRSDFF----NQEYQTRD-------VDC 270
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
VLTTGEV L++ + V+ LE +PLD + +++ E G SGGY E VFRHAA+
Sbjct: 271 VLTTGEVFRLLEEEGVSLAELESAPLDSLTSSMSAEELTGHRGGGSGGYLEHVFRHAAQE 330
Query: 255 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
LFG + + ++ +RN DF+EV LE EG+ LL+FA+ YGF+N+QN+V+K+K +C Y +
Sbjct: 331 LFGIHV-AEVTYRPLRNKDFQEVTLEREGQVLLRFAMAYGFRNIQNLVQKLKRGRCPYHY 389
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLE 374
VEVMACPSGCLNGGGQ+K P +EL++ +E +Y + P P + LY WL+
Sbjct: 390 VEVMACPSGCLNGGGQLK-APDVPGRELLQQVERLY-SIIREEAPEDAPGIWELYQHWLQ 447
Query: 375 QPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
GSE+A+ +HT+YH V K+ + W
Sbjct: 448 GEGSEQARHLLHTQYHAVEKASSGLSIRW 476
>gi|193786438|dbj|BAG51721.1| unnamed protein product [Homo sapiens]
Length = 374
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 181/393 (46%), Positives = 253/393 (64%), Gaps = 19/393 (4%)
Query: 11 LSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTL 70
++ ++ + V++S+SPQSRASLA F ++P +KLT+F K +GV +FDT+ SR +L
Sbjct: 1 MAAPSQQRLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSL 60
Query: 71 IEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 130
+E+ EF+ R++ +LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ
Sbjct: 61 LESQREFVRRFR-----GQAGCRQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQ 115
Query: 131 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 190
+G+ +K Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD
Sbjct: 116 VMGSLVKDFFAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD------ 165
Query: 191 EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH 250
VD VLTTGEV L++ + V+ LE +PLD + + E G SGGY E VFRH
Sbjct: 166 -VDCVLTTGEVFRLLEEEGVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRH 224
Query: 251 AAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
AA+ LFG + + +K +RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C
Sbjct: 225 AARELFGIHV-AEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRC 283
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYD 370
Y +VEVMACPSGCLNGGGQ++ P + +EL++ +E +Y V P P V+ LY
Sbjct: 284 PYHYVEVMACPSGCLNGGGQLQ-APDRPSRELLQHVERLY-GMVRAEAPEDAPGVQELYT 341
Query: 371 EWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
WL+ SE A + +HT+YH V K+ T W
Sbjct: 342 HWLQGTDSECAGRLLHTQYHAVEKASTGLGIRW 374
>gi|355756418|gb|EHH60026.1| Nuclear prelamin A recognition factor-like protein [Macaca
fascicularis]
Length = 476
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 181/393 (46%), Positives = 254/393 (64%), Gaps = 19/393 (4%)
Query: 11 LSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTL 70
++ ++ + V++S+SPQSRASLA F ++P +KLT+F K +GV +FDT+ SR +L
Sbjct: 103 MAAPSQQRLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSL 162
Query: 71 IEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 130
+E+ EF+ R++ + +LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ
Sbjct: 163 LESQREFVRRFRGQADC-----RQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQ 217
Query: 131 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 190
+G+ +K Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD
Sbjct: 218 VMGSLVKDFFAQQQRLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD------ 267
Query: 191 EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH 250
VD VLTTGEV L++ + V+ LE +PLD + + E G SGGY E VFRH
Sbjct: 268 -VDCVLTTGEVFRLLEEEDVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRH 326
Query: 251 AAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
AA+ LFG + + +K +RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C
Sbjct: 327 AARELFGIHV-AEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRC 385
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYD 370
Y +VEVMACPSGCLNGGGQ++ P + +EL++ +E +Y V P P V+ LY
Sbjct: 386 PYHYVEVMACPSGCLNGGGQLQ-APDRPSRELLQHVERLY-GMVRAEMPEDAPGVQELYT 443
Query: 371 EWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
WL+ SE A + +HT+YH V K+ T W
Sbjct: 444 HWLQGTDSECAGRLLHTQYHAVEKASTGLGIRW 476
>gi|402907164|ref|XP_003916348.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL [Papio
anubis]
Length = 476
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 181/386 (46%), Positives = 250/386 (64%), Gaps = 19/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V++S+SPQSRASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF
Sbjct: 110 RLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R++ + +LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ +G+ +K
Sbjct: 170 VRRFRGQADC-----RQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLT
Sbjct: 225 DFFAQQQRLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV L++ + V+ LE +PLD + + E G SGGY E VFRHAA+ LFG
Sbjct: 274 TGEVFRLLEEEGVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFG 333
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+ + +K +RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEV
Sbjct: 334 IHV-AEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEV 392
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACPSGCLNGGGQ++ P + +EL++ +E +Y V P P V+ LY WL+
Sbjct: 393 MACPSGCLNGGGQLQ-APDRPSRELLQHVERLY-GMVRAEMPEDAPGVQELYTHWLQGTD 450
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
SE A + +HT+YH V K+ T W
Sbjct: 451 SECAGRLLHTQYHAVEKANTGLGIRW 476
>gi|432098945|gb|ELK28435.1| Cytosolic Fe-S cluster assembly factor NARFL [Myotis davidii]
Length = 476
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 186/386 (48%), Positives = 247/386 (63%), Gaps = 19/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K V+IS+SPQS ASLA F ++P KKLT F K LG +FDT+ SR+ +L+E+ EF
Sbjct: 110 KLVVISVSPQSSASLAARFQLNPTDTAKKLTAFFKKLGAHYVFDTAFSRNFSLLESQREF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R+++ S +LPML+SACPGWICYAEK GS I+PYIS+ +SPQQ +G+ +K
Sbjct: 170 VQRFREQASS-----KQTLPMLASACPGWICYAEKTHGSTIIPYISTARSPQQVMGSLVK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD+I+HVTVMPCYDKKLEA+R DF SQE RD VD V+T
Sbjct: 225 DFFAQQQHVTPDKIHHVTVMPCYDKKLEASRPDFF----SQEYQTRD-------VDCVIT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV L++ + V+ LE +PLD + +V + G SGGY E VFRHAA+ LFG
Sbjct: 274 TGEVFKLLEEEGVSLSELEPAPLDSVFGSVSVQEPTSHRGGGSGGYLEHVFRHAAQELFG 333
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
++ + +K +RN DF+EV LE EG+ LL FA YGF+N+QN+V+K+K +C Y +VEV
Sbjct: 334 IHVD-EVTYKPLRNKDFQEVTLESEGRVLLHFAAAYGFRNIQNLVQKLKRGRCPYHYVEV 392
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACPSGCLNGGGQ+K P KEL++ +E +Y V P P V+ LY+ WL
Sbjct: 393 MACPSGCLNGGGQLK-APEIPGKELLQHVERLY-SMVRTEAPEDVPGVQELYEHWLHGKD 450
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
SE+A +HT YH V K+ + W
Sbjct: 451 SERASCLLHTSYHAVEKASSGLSIRW 476
>gi|62897571|dbj|BAD96725.1| nuclear prelamin A recognition factor-like variant [Homo sapiens]
Length = 476
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 180/386 (46%), Positives = 249/386 (64%), Gaps = 19/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V++S+SPQSRASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF
Sbjct: 110 RLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R++ + +LP+L+SACPGWICYAEK GS+ LP+IS+ +SPQQ +G+ +K
Sbjct: 170 VRRFRGQADC-----RQALPLLASACPGWICYAEKTHGSFTLPHISTARSPQQVMGSLVK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLT
Sbjct: 225 DFFAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV L++ + V+ LE +PLD + + E G SGGY E VFRHAA+ LFG
Sbjct: 274 TGEVFRLLEEEGVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFG 333
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+ + +K +RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEV
Sbjct: 334 IHV-AEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEV 392
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACPSGCLNGGGQ++ P + +EL++ +E +Y V P P V+ LY WL+
Sbjct: 393 MACPSGCLNGGGQLQ-APDRPSRELLQHVERLY-GMVRAEAPEDAPGVQELYTHWLQGTD 450
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
SE A + +HT+YH V K+ T W
Sbjct: 451 SECAGRLLHTQYHAVEKASTGLGIRW 476
>gi|410985401|ref|XP_003999011.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL [Felis
catus]
Length = 476
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 186/411 (45%), Positives = 265/411 (64%), Gaps = 27/411 (6%)
Query: 1 MLEKQSLDEFLSNINKGKA--------VIISLSPQSRASLAEHFGISPLQVFKKLTTFLK 52
++ +QS +E I+ K V++S+SPQSRASLA FG++P +KLT F K
Sbjct: 85 LITQQSHEELRKVIDANKTAAPGQQRLVVVSVSPQSRASLAAQFGLNPTDTARKLTAFFK 144
Query: 53 SLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEK 112
+GV +FDTS SR+ +L+E+ EF+ R++ +S +LP+L+SACPGWICYAEK
Sbjct: 145 KIGVHYVFDTSFSRNFSLLESQREFVQRFRGQADS-----QQALPVLASACPGWICYAEK 199
Query: 113 QLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFV 172
GS+++PY+S+V+SPQQ +G+ +K Q+ PD IYHVTVMPCYDKKLEA+R DF
Sbjct: 200 THGSFLIPYLSTVRSPQQVMGSLVKDFFAQQQHLTPDRIYHVTVMPCYDKKLEASRPDFF 259
Query: 173 FQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGH 232
SQ+ RD VD V+TTGEV L++ + V+ LE +PLD + ++V +
Sbjct: 260 ----SQDYQTRD-------VDCVVTTGEVFKLLEEEGVSLSELEPAPLDSLCSSVSAQEP 308
Query: 233 LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALC 292
G SGGY E VF+HAA+ LFG ++ + ++ +RN DF+EV LE EG+ +L FA
Sbjct: 309 SSHRGGGSGGYLEHVFQHAARELFGIHVD-EITYRPLRNKDFQEVTLEKEGQVVLHFAAA 367
Query: 293 YGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE 352
YGF+N+QN+V+K+K +C Y +VEVMACP+GCLNGGGQ+K P KEL++ +ET+Y
Sbjct: 368 YGFRNIQNLVQKLKRGRCPYHYVEVMACPAGCLNGGGQLK-APSTPGKELLQRVETLY-S 425
Query: 353 NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
V P P ++ LY WL+ GSE+A + +HT YH V K+ ++ W
Sbjct: 426 MVRTEAPEDAPGIQELYRCWLQGEGSERAGRLLHTSYHAVEKASSSLGIRW 476
>gi|197100706|ref|NP_001124725.1| cytosolic Fe-S cluster assembly factor NARFL [Pongo abelii]
gi|75042593|sp|Q5RF36.1|NARFL_PONAB RecName: Full=Cytosolic Fe-S cluster assembly factor NARFL;
AltName: Full=Iron-only hydrogenase-like protein 1;
Short=IOP1; AltName: Full=Nuclear prelamin A recognition
factor-like protein
gi|55725679|emb|CAH89621.1| hypothetical protein [Pongo abelii]
Length = 476
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 180/386 (46%), Positives = 249/386 (64%), Gaps = 19/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V++S+SPQSRASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF
Sbjct: 110 RLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R++ + +LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ +G+ +K
Sbjct: 170 VRRFRGQADC-----KQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLT
Sbjct: 225 DFFAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV L++ + V+ LE +PLD + + E G SGGY E VFRHAA+ LFG
Sbjct: 274 TGEVFRLLEEEGVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFG 333
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+ + +K +RN DF+EV LE EG+ LL A+ YGF+N+QN+V+++K +C Y +VEV
Sbjct: 334 IHV-AEVTYKPLRNKDFQEVTLEKEGQVLLHLAMAYGFRNIQNLVQRLKRGRCPYHYVEV 392
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACPSGCLNGGGQ++ P + +EL++ +E +Y V P P V+ LY WL+
Sbjct: 393 MACPSGCLNGGGQLQ-APDRPSRELLQHVERLY-GMVRAEAPEDAPGVQELYTHWLQGTD 450
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
SE A + +HT+YH V K+ T W
Sbjct: 451 SECAGRLLHTQYHAVEKASTGLGIRW 476
>gi|403273198|ref|XP_003928407.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL [Saimiri
boliviensis boliviensis]
Length = 471
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 177/386 (45%), Positives = 251/386 (65%), Gaps = 24/386 (6%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V++S+SPQSRASLA F ++P +KLT+F K +GV +FDT+ SR+ +L+E+ EF
Sbjct: 110 RLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRNFSLLESQREF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R++ +LP+L+SACPGWICYAEK S+ILP+IS+ +SPQQ +G+ +K
Sbjct: 170 VRRFR----------GQALPVLASACPGWICYAEKTHSSFILPHISTARSPQQVMGSLVK 219
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD++YHVTVMPCYDKKLEA+R DF +QE RD VD VLT
Sbjct: 220 DFFAQQQHLTPDKVYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLT 268
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV L++ + V+ LE +PLD + + E G SGGY E VFRHAA+ LFG
Sbjct: 269 TGEVFKLLEEEGVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFG 328
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+ + +K +RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEV
Sbjct: 329 IQV-AEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEV 387
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACPSGCLNGGGQ++ P + +EL++ +E +Y V + P V+ LY +WL+
Sbjct: 388 MACPSGCLNGGGQLQ-APDRPSRELLQHVERLY-SMVRVEAPEDAAGVQELYTQWLQGTD 445
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
+E+A + +HT+YH V K+ T W
Sbjct: 446 TERAGRLLHTQYHAVEKANTGLGIRW 471
>gi|326929056|ref|XP_003210687.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Meleagris gallopavo]
Length = 476
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 192/403 (47%), Positives = 273/403 (67%), Gaps = 27/403 (6%)
Query: 1 MLEKQSLDEFLSNI--------NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLK 52
++ +QS +EF + N+ K V++S+SPQSRASLA +S L+ KKLT FLK
Sbjct: 85 LITQQSHEEFYKTLAFNKTAAPNEQKLVVVSVSPQSRASLAAKCKMSVLETAKKLTAFLK 144
Query: 53 SLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEK 112
S GV +FDT+ SR+ +L+E+ EF+ R+++ +S+D+++ LPML+SACPGWICYAEK
Sbjct: 145 SQGVHYVFDTTFSRNFSLLESQKEFVKRFRK--QSEDKKA---LPMLASACPGWICYAEK 199
Query: 113 QLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFV 172
GS+I+PYIS+ KSPQQ +G+ IK H ++ P++IYHVTVMPCYDKKLEA+R DF
Sbjct: 200 THGSFIIPYISTTKSPQQIMGSLIKGHFAEQQHLPPNKIYHVTVMPCYDKKLEASRPDFF 259
Query: 173 FQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGH 232
+QE RD VD V+TTGEVL L++ + V+ + +PLD M + +E
Sbjct: 260 ----NQEYQTRD-------VDCVITTGEVLKLLEQEKVSLSDVAPAPLDTMFNSATEEEL 308
Query: 233 LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALC 292
G SGGY E ++++AAK LFG ++ +++K ++N DF+EV LE +G LL FAL
Sbjct: 309 TGHSGGGSGGYLEHIYKYAAKELFGIEVDT-IQYKPLKNKDFQEVTLEKDGAVLLHFALA 367
Query: 293 YGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE 352
YGF+N+QN+V+K+K K Y +VEVMACPSGCLNGGGQIK + G+ K+ ++ +E +Y E
Sbjct: 368 YGFRNIQNLVQKLKRGKSPYHYVEVMACPSGCLNGGGQIKVE-GEPSKDWLQQVEKLY-E 425
Query: 353 NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKS 395
++ P +N V +LY++WL SEKA K +HTEYH V K+
Sbjct: 426 SLKTEIPEENRTVTALYEQWLGGTESEKAGKALHTEYHAVEKA 468
>gi|443689646|gb|ELT92002.1| hypothetical protein CAPTEDRAFT_150962 [Capitella teleta]
Length = 476
Score = 350 bits (898), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 180/387 (46%), Positives = 246/387 (63%), Gaps = 21/387 (5%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K +++SLS QS SLA F +S + +L+TF K +G ++D S +RD++LIE+C EF
Sbjct: 110 KMIVVSLSHQSITSLAAKFSLSANEAAVRLSTFFKQIGSDRVYDISIARDISLIESCREF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R+ ++ + SLPML+SACPGW+CYAEK GSYILP+I+S KSPQQ +G+ +K
Sbjct: 170 VKRHS------NQATKGSLPMLASACPGWVCYAEKTHGSYILPHIASTKSPQQIMGSLVK 223
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+ G D IYH+TVMPC+DKKLEA+R DF DE +VD V++
Sbjct: 224 DFVSSSFGLSADRIYHITVMPCFDKKLEASRTDFY-----------DEICSTKDVDCVIS 272
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG-VAGSSGGYAETVFRHAAKTLF 256
TGEV ++ + V L+ + LD + N DEG L G SGGY E V R+AAK L
Sbjct: 273 TGEVEQMLLKENVALNDLDSTSLDSIFGN-SDEGVLASHQGGGSGGYLEHVMRYAAKELH 331
Query: 257 GKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVE 316
G ++ L++K +RN DF+EV +E + K +LKFA+ YGF+N+QNIV+K+K K YQ+VE
Sbjct: 332 GIEVD-ELKYKVMRNQDFQEVMVEKDSKVVLKFAIAYGFRNIQNIVQKIKRGKLPYQYVE 390
Query: 317 VMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQP 376
+MACPSGCLNGGGQI+P+ ++PK+L+ L IY N+ PF V LYD WL
Sbjct: 391 IMACPSGCLNGGGQIRPEDNETPKDLLSRLNEIY-RNMPTRMPFHQNEVEDLYDNWLGGV 449
Query: 377 GSEKAKKHVHTEYHPVVKSITAQLHNW 403
SEKA + +HT+YH V K TA W
Sbjct: 450 DSEKANRLLHTKYHEVEKINTALNIKW 476
>gi|26335839|dbj|BAC31620.1| unnamed protein product [Mus musculus]
Length = 476
Score = 350 bits (898), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 183/386 (47%), Positives = 253/386 (65%), Gaps = 19/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V++S+SPQSRASLA F + P +KLT+F K +GV +FDT+ +R+ +L+E+ EF
Sbjct: 110 RLVVVSISPQSRASLAARFRLDPTDTARKLTSFFKKIGVHFVFDTAFARNFSLLESQKEF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R+++ S + +LP+L+SACPGWICYAEK G++ILPYIS+ +SPQQ +G+ +K
Sbjct: 170 VQRFREQANSRE-----ALPVLASACPGWICYAEKTHGNFILPYISTARSPQQVMGSLVK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLT
Sbjct: 225 DFFAQQQLLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEYQTRD-------VDCVLT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV L++ + V+ LE +PLD + ++V E G SGGY E VFRHAA+ LFG
Sbjct: 274 TGEVFRLLEEEGVSLTELEPAPLDGLTSSVSAEEPSSHRGGGSGGYLEHVFRHAAQELFG 333
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+ + ++ +RN DF+EV LE EG+ LL+FA+ YGF+N+QN+V+K+K +C Y +VEV
Sbjct: 334 IHV-AEVTYQPLRNKDFQEVTLEREGQVLLRFAVAYGFRNIQNLVQKLKRGRCPYHYVEV 392
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACPSGCLNGGGQ+K P EL++ LE +Y V P P V+ LY WL+
Sbjct: 393 MACPSGCLNGGGQLK-APDTEGSELLQQLERLY-SMVRTGAPEDAPGVQELYQHWLQGED 450
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
SE+A + +HT+YH V K + W
Sbjct: 451 SERASRLLHTQYHAVEKPSSGLSIRW 476
>gi|254911120|ref|NP_080514.3| cytosolic Fe-S cluster assembly factor NARFL [Mus musculus]
gi|148887155|sp|Q7TMW6.2|NARFL_MOUSE RecName: Full=Cytosolic Fe-S cluster assembly factor NARFL;
AltName: Full=Iron-only hydrogenase-like protein 1;
Short=IOP1; AltName: Full=Nuclear prelamin A recognition
factor-like protein
gi|12858305|dbj|BAB31268.1| unnamed protein product [Mus musculus]
gi|148690499|gb|EDL22446.1| nuclear prelamin A recognition factor-like [Mus musculus]
Length = 476
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 183/386 (47%), Positives = 253/386 (65%), Gaps = 19/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V++S+SPQSRASLA F + P +KLT+F K +GV +FDT+ +R+ +L+E+ EF
Sbjct: 110 RLVVVSISPQSRASLAARFRLDPTDTARKLTSFFKKIGVHFVFDTAFARNFSLLESQKEF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R+++ S + +LP+L+SACPGWICYAEK G++ILPYIS+ +SPQQ +G+ +K
Sbjct: 170 VQRFREQANSRE-----ALPVLASACPGWICYAEKTHGNFILPYISTARSPQQVMGSLVK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLT
Sbjct: 225 DFFAQQQLLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEYQTRD-------VDCVLT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV L++ + V+ LE +PLD + ++V E G SGGY E VFRHAA+ LFG
Sbjct: 274 TGEVFRLLEEEGVSLTELEPAPLDGLTSSVSAEEPSSHRGGGSGGYLEHVFRHAAQELFG 333
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+ + ++ +RN DF+EV LE EG+ LL+FA+ YGF+N+QN+V+K+K +C Y +VEV
Sbjct: 334 IHV-AEVTYQPLRNKDFQEVTLEREGQVLLRFAVAYGFRNIQNLVQKLKRGRCPYHYVEV 392
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACPSGCLNGGGQ+K P EL++ LE +Y V P P V+ LY WL+
Sbjct: 393 MACPSGCLNGGGQLK-APDTEGSELLQQLERLY-SMVRTEAPEDAPGVQELYQHWLQGED 450
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
SE+A + +HT+YH V K + W
Sbjct: 451 SERASRLLHTQYHAVEKPSSGLSIRW 476
>gi|344292240|ref|XP_003417836.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL [Loxodonta
africana]
Length = 476
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 183/381 (48%), Positives = 255/381 (66%), Gaps = 19/381 (4%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
++ K V+IS+SPQS ASLA F ++P +KLT+F K +GV +FDT+ SR+ +L+E+
Sbjct: 107 DQQKLVVISVSPQSVASLAARFQLNPTDTSRKLTSFFKKIGVHYVFDTAFSRNFSLLESQ 166
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
EF+ R+ QSQ + S +LP+L+SACPGWICYAEK GS++LP++S+V+SPQQ +GA
Sbjct: 167 REFVQRF-QSQAN----SGQALPVLASACPGWICYAEKTHGSFLLPHLSTVRSPQQVMGA 221
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
+K Q+ PD +YHVTVMPCYDKKLEA+R DF +QE RD VD
Sbjct: 222 LVKDFFAQQQHLTPDRLYHVTVMPCYDKKLEASRPDFF----NQEFQTRD-------VDC 270
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V+TTGE+ L++ + V+F LE +PLD + + E G SGGY E VFRHAA
Sbjct: 271 VITTGEMFKLLEEEGVSFPDLEPAPLDVLSSCASAEEPTSHRGGGSGGYLEHVFRHAAWE 330
Query: 255 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
LFG + + +K +RN DF+EV LE +G+ LL FA YGF+N+QN+V+K++ +C Y +
Sbjct: 331 LFG-IHVAEVTYKPLRNKDFQEVTLERDGQVLLHFATAYGFRNIQNLVQKLRRGRCPYHY 389
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLE 374
VEVMACPSGCLNGGGQ++ G+S KEL++ +E +Y E V +P P V+ LY WL+
Sbjct: 390 VEVMACPSGCLNGGGQLRALDGRS-KELLQQVERLYGE-VRTQEPRDVPGVQKLYRHWLQ 447
Query: 375 QPGSEKAKKHVHTEYHPVVKS 395
GS +A ++T+YH V K+
Sbjct: 448 GEGSNRAGHLLYTQYHAVEKA 468
>gi|390345777|ref|XP_788197.3| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL
[Strongylocentrotus purpuratus]
Length = 478
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 182/390 (46%), Positives = 261/390 (66%), Gaps = 19/390 (4%)
Query: 14 INKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
++K VI+++SPQSRASLA + +S K+LTTF + LGV +FD + SRD +L+E+
Sbjct: 108 VSKQMTVIVTISPQSRASLAAKYKLSLPDTAKRLTTFFRELGVHHVFDETFSRDFSLLES 167
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
EFI R+ +++ + SLPML+SACPGW+CYAEK GSYILPYIS+ KSPQQ IG
Sbjct: 168 QREFIQRF------NNQATKGSLPMLASACPGWVCYAEKTHGSYILPYISTTKSPQQIIG 221
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+ +K ++ Q L +PD IYHVTVMPCYDKKLEA+R+DF ++ YR +VD
Sbjct: 222 SLVKDYVAQSLRVKPDCIYHVTVMPCYDKKLEASRDDFY------DDVYRTR-----DVD 270
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+T+GEV ++ + V+ +E +++ + + G SGG+ E + RHAAK
Sbjct: 271 CVITSGEVEAMLAKEQVSLSEIEPQEYNRVFPFGESSSVVSHSGGGSGGFHEHILRHAAK 330
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
LFGK + G L++K ++N DF+EV +E +G+ LL+FAL YGF+N+QN+V+K+K K Y
Sbjct: 331 ELFGKEL-GELQYKVMKNKDFKEVTVESDGQPLLRFALAYGFRNIQNLVQKIKRGKSPYH 389
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWL 373
FVEVMACP+GC+NGGGQIK + G + KEL+ +E +Y + P +N +V++LY+EWL
Sbjct: 390 FVEVMACPAGCVNGGGQIKAEEGITAKELLVEVEELY-NSAPTRTPEENEVVQTLYEEWL 448
Query: 374 EQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
GSEKA+ +HT+YH + K+ A W
Sbjct: 449 GGVGSEKARTMLHTQYHALEKNTNALNIKW 478
>gi|150387422|sp|A4FV58.2|NARFL_BOVIN RecName: Full=Cytosolic Fe-S cluster assembly factor NARFL;
AltName: Full=Iron-only hydrogenase-like protein 1;
Short=IOP1; AltName: Full=Nuclear prelamin A recognition
factor-like protein
gi|296473458|tpg|DAA15573.1| TPA: cytosolic Fe-S cluster assembly factor NARFL [Bos taurus]
Length = 476
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 179/389 (46%), Positives = 253/389 (65%), Gaps = 19/389 (4%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
++ K V+IS+SPQSRASLA F ++P +KLT F K +G +FDT+ SR+ +L+E+
Sbjct: 107 DQQKLVVISVSPQSRASLAVRFQLNPTDTARKLTAFFKKIGAHYVFDTAFSRNFSLLESQ 166
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
EF+ R++ ++D E++ LP+L+SACPGWICYAEK GS +LP+IS+ +SPQQ +G+
Sbjct: 167 REFVRRFRG--QADPEQA---LPVLTSACPGWICYAEKTHGSTLLPHISTARSPQQVMGS 221
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
+K Q+ PD++YH TVMPCYDKKLEA+R DF SQE RD VD
Sbjct: 222 LVKDFFAQQQHLTPDKVYHATVMPCYDKKLEASRPDFF----SQEHQTRD-------VDC 270
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V+TTGEV L++ + V+ LE +PLD + ++ + G SGGY E VFRHAA+
Sbjct: 271 VITTGEVFKLLEEEGVSLSELEPAPLDSLCSSASAQEPTSHQGGGSGGYLEHVFRHAAQE 330
Query: 255 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
LFG + + ++ +RN D +EV LE EG+ LL FA YGF+N+QN+V+K+K +C Y +
Sbjct: 331 LFGIHVT-EVTYRPLRNKDLQEVILEREGQVLLHFAAAYGFRNIQNLVQKLKRGRCPYHY 389
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLE 374
VEVMACP+GCLNGGGQ+K P KEL++ +E +Y V P P ++ LY+ WL+
Sbjct: 390 VEVMACPAGCLNGGGQLK-APDMPGKELLQQVERLY-GLVRTEAPEDAPGIQELYERWLQ 447
Query: 375 QPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
GSE+A + +HT YH V K+ + W
Sbjct: 448 GAGSERAGRLLHTSYHAVEKAGSGLSIRW 476
>gi|261824043|ref|NP_001076880.2| cytosolic Fe-S cluster assembly factor NARFL [Bos taurus]
gi|152941142|gb|ABS45008.1| nuclear prelamin A recognition factor-like [Bos taurus]
Length = 476
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 179/389 (46%), Positives = 252/389 (64%), Gaps = 19/389 (4%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
++ K V+IS+SPQSRASLA F ++P +KLT F K +G +FDT+ SR+ +L+E+
Sbjct: 107 DQQKLVVISVSPQSRASLAVRFQLNPTDTARKLTAFFKKIGAHYVFDTAFSRNFSLLESQ 166
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
EF+ R++ ++D E++ LP+L+SACPGWICYAEK GS +LP+IS+ +SPQQ +G+
Sbjct: 167 REFVRRFRG--QADPEQA---LPVLTSACPGWICYAEKTHGSTLLPHISTARSPQQVMGS 221
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
+K Q+ PD++YH TVMPCYDKKLEA+R DF SQE RD VD
Sbjct: 222 LVKDFFAQQQHLTPDKVYHATVMPCYDKKLEASRPDFF----SQEHQTRD-------VDC 270
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V+TTGEV L++ V+ LE +PLD + ++ + G SGGY E VFRHAA+
Sbjct: 271 VITTGEVFKLLEEGGVSLSELEPAPLDSLCSSASAQEPTSHQGGGSGGYLEHVFRHAAQE 330
Query: 255 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
LFG + + ++ +RN D +EV LE EG+ LL FA YGF+N+QN+V+K+K +C Y +
Sbjct: 331 LFGIHVT-EVTYRPLRNKDLQEVILEREGQVLLHFAAAYGFRNIQNLVQKLKRGRCPYHY 389
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLE 374
VEVMACP+GCLNGGGQ+K P KEL++ +E +Y V P P ++ LY+ WL+
Sbjct: 390 VEVMACPAGCLNGGGQLK-APDMPGKELLQQVERLY-GLVRTEAPEDAPGIQELYERWLQ 447
Query: 375 QPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
GSE+A + +HT YH V K+ + W
Sbjct: 448 GAGSERAGRLLHTSYHAVEKAGSGLSIRW 476
>gi|440913441|gb|ELR62891.1| Cytosolic Fe-S cluster assembly factor NARFL [Bos grunniens mutus]
Length = 476
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 180/389 (46%), Positives = 253/389 (65%), Gaps = 19/389 (4%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
++ K V+IS+SPQSRASLA F ++P +KLT F K +G +FDT+ SR+ +L+E+
Sbjct: 107 DQQKLVVISVSPQSRASLAVRFQLNPTDTARKLTAFFKKIGAHYVFDTAFSRNFSLLESQ 166
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
EF+ R++ ++D E++ LP+L+SACPGWICYAEK GS +LP+IS+ +SPQQ +G+
Sbjct: 167 WEFVRRFRG--QADPEQA---LPVLTSACPGWICYAEKTHGSTLLPHISTARSPQQVMGS 221
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
+K Q+ PD++YH TVMPCYDKKLEA+R DF SQE RD VD
Sbjct: 222 LVKDFFAQQQHLTPDKVYHATVMPCYDKKLEASRPDFF----SQEHQTRD-------VDC 270
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V+TTGEV L++ + V+ LE +PLD + ++ + G SGGY E VFRHAA+
Sbjct: 271 VITTGEVFKLLEEEGVSLSELEPAPLDSLCSSASAQEPTSHQGGGSGGYLEHVFRHAAQE 330
Query: 255 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
LFG + + ++ +RN D +EV LE EG+ LL FA YGF+N+QN+V+K+K +C Y +
Sbjct: 331 LFGIHVT-EVTYRPLRNKDLQEVILEREGQVLLHFAAAYGFRNIQNLVQKLKRGRCPYHY 389
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLE 374
VEVMACP+GCLNGGGQ+K P KEL++ +E +Y V P P V+ LY+ WL+
Sbjct: 390 VEVMACPAGCLNGGGQLK-APDMPGKELLQQVERLY-GLVRTEAPEDAPGVQELYERWLQ 447
Query: 375 QPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
GSE+A + +HT YH V K+ + W
Sbjct: 448 GAGSERAGRLLHTSYHAVEKAGSGLSIRW 476
>gi|31217349|gb|AAH52830.1| Nuclear prelamin A recognition factor-like [Mus musculus]
Length = 476
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 182/386 (47%), Positives = 252/386 (65%), Gaps = 19/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V++S+SPQSRASLA F + P +KLT+F K +GV +FDT+ +R+ +L+E+ EF
Sbjct: 110 RLVVVSISPQSRASLAARFRLDPTDTARKLTSFFKKIGVHFVFDTAFARNFSLLESQKEF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R+++ S + +LP+L+SACPGWICYAEK G++ILPYIS+ +SPQQ +G+ +K
Sbjct: 170 VQRFREQANSRE-----ALPVLASACPGWICYAEKTHGNFILPYISTARSPQQVMGSLVK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLT
Sbjct: 225 DFFAQQQLLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEYQTRD-------VDCVLT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV L++ + + LE +PLD + ++V E G SGGY E VFRHAA+ LFG
Sbjct: 274 TGEVFRLLEEEGASLTELEPAPLDGLTSSVSAEEPSSHRGGGSGGYLEHVFRHAAQELFG 333
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+ + ++ +RN DF+EV LE EG+ LL+FA+ YGF+N+QN+V+K+K +C Y +VEV
Sbjct: 334 IHV-AEVTYQPLRNKDFQEVTLEREGQVLLRFAVAYGFRNIQNLVQKLKRGRCPYHYVEV 392
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACPSGCLNGGGQ+K P EL++ LE +Y V P P V+ LY WL+
Sbjct: 393 MACPSGCLNGGGQLK-APDTEGSELLQQLERLY-SMVRTEAPEDAPGVQELYQHWLQGED 450
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
SE+A + +HT+YH V K + W
Sbjct: 451 SERASRLLHTQYHAVEKPSSGLSIRW 476
>gi|12851667|dbj|BAB29126.1| unnamed protein product [Mus musculus]
Length = 476
Score = 347 bits (891), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 182/386 (47%), Positives = 252/386 (65%), Gaps = 19/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V++S+SPQSRASLA F + P +KLT+F K +GV +FDT+ +R+ +L+E+ EF
Sbjct: 110 RLVVVSISPQSRASLAARFRLDPTDTARKLTSFFKKIGVHFVFDTAFARNFSLLESQKEF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R+++ S + +LP+L+SACPGWICYAEK G++ILPYIS+ +SPQQ +G+ +K
Sbjct: 170 VQRFREQANSRE-----ALPVLASACPGWICYAEKTHGNFILPYISTARSPQQVMGSLVK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLT
Sbjct: 225 DFFAQQQLLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEYQTRD-------VDCVLT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV L++ + V+ LE +PLD + ++V E G SGGY E VFRHAA+ LFG
Sbjct: 274 TGEVFRLLEEEGVSLTELEPAPLDGLTSSVSAEEPSSHRGGGSGGYLEHVFRHAAQELFG 333
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+ + ++ +RN DF+EV LE EG+ LL+FA+ YGF+N+QN+V+K+K +C Y +VEV
Sbjct: 334 IHV-AEVTYQPLRNKDFQEVTLEREGQVLLRFAVAYGFRNIQNLVQKLKRGRCPYHYVEV 392
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACPSGCLNGGGQ+ P EL++ LE +Y V P P V+ LY WL+
Sbjct: 393 MACPSGCLNGGGQLT-APDTEGSELLQQLERLY-SMVRTEAPEDAPGVQELYQHWLQGED 450
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
SE+A + +HT+YH V K + W
Sbjct: 451 SERASRLLHTQYHAVEKPSSGLSIRW 476
>gi|335284772|ref|XP_003124717.2| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like [Sus
scrofa]
Length = 476
Score = 347 bits (890), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 179/386 (46%), Positives = 248/386 (64%), Gaps = 19/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V+IS+SPQS+ASLA F ++P +KLT F K +G +FDT+ SR+ +L+E+ EF
Sbjct: 110 RLVVISVSPQSQASLAVRFQLNPTDTARKLTAFFKRIGAHYVFDTAFSRNFSLLESQREF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R++ S +LP+L+SACPGWICYAEK G +LP+IS+ +SPQQ +GA +K
Sbjct: 170 VRRFR-----GQAGSQQALPVLTSACPGWICYAEKTHGRALLPHISTARSPQQVMGALVK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD+IYHV VMPC+DKKLEA+R DF SQE RD VD V+T
Sbjct: 225 DFFAQQQHLTPDKIYHVAVMPCHDKKLEASRPDFF----SQEHQTRD-------VDCVIT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEVL L++ + V+ ALE + LD + + V D+ G SGGY E VFR+AA+ LFG
Sbjct: 274 TGEVLKLLEEEGVSLSALEPAALDSLCSTVSDQEPTSHRGGGSGGYLEHVFRYAARELFG 333
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+ + ++ +RN D +EV LE EG+ LL FA YGF+N+QN+V+K+K +C Y +VEV
Sbjct: 334 IHVT-EVTYRPLRNKDLQEVTLEREGQVLLHFAAAYGFRNIQNLVQKLKRGRCPYHYVEV 392
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACP+GCLNGGGQ+K P KEL++ +E +Y V P P V+ LY WL+ G
Sbjct: 393 MACPAGCLNGGGQLK-APDTPGKELLQQVERLY-AMVRTQAPEDAPGVQELYRRWLQGEG 450
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
SE+A + +HT YH V K+ ++ W
Sbjct: 451 SERASQLLHTSYHAVEKAGSSLNIKW 476
>gi|410902225|ref|XP_003964595.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Takifugu rubripes]
Length = 476
Score = 347 bits (889), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 175/378 (46%), Positives = 246/378 (65%), Gaps = 18/378 (4%)
Query: 26 PQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQ 85
PQSRASLA + +S + ++LT+F K LGV +FDT+ SR +L+E+ EF+ R+++
Sbjct: 117 PQSRASLAARYDLSSTEAGRRLTSFFKGLGVHHVFDTTFSRTFSLLESQREFVERFQRK- 175
Query: 86 ESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLG 145
E+ +SLPM++SACPGWICYAEK G ++LPYIS+ +SPQQ +G+ +K + ++ G
Sbjct: 176 ----EQDKTSLPMMTSACPGWICYAEKTHGDFVLPYISTTRSPQQMMGSLVKGYFAEQRG 231
Query: 146 FRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI 205
P++IYHV VMPC+DKKLEA+R DF Y D+ + EVD V+T+GEV ++
Sbjct: 232 LSPEQIYHVAVMPCFDKKLEASRSDF----------YMDQP-QTREVDCVITSGEVQQML 280
Query: 206 QLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLE 265
+ + V+ +E PLD + +NV + +L SGGY VF +AAK LFG+ ++ L
Sbjct: 281 EERDVSLNNVEPVPLDTVFSNVYGDEYLSHAGSGSGGYLHHVFSYAAKHLFGEEVK-ELT 339
Query: 266 FKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCL 325
+KT++N DF+EV LE +G LL FA YGF+N+QN+V+K+K K Y FVEVMACPSGCL
Sbjct: 340 YKTLKNKDFQEVTLEKDGAVLLCFASTYGFRNIQNLVQKLKRGKSPYHFVEVMACPSGCL 399
Query: 326 NGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHV 385
NGGGQ+K PGQ+ KEL++ +E IY L P +N V LY WL G E+AK+ +
Sbjct: 400 NGGGQLKALPGQNQKELLQKVEAIYRAERPLL-PEENNSVAELYQLWLRTVGEERAKELL 458
Query: 386 HTEYHPVVKSITAQLHNW 403
T+YH V K W
Sbjct: 459 RTQYHTVEKMKNGLTMKW 476
>gi|332239993|ref|XP_003269175.1| PREDICTED: LOW QUALITY PROTEIN: cytosolic Fe-S cluster assembly
factor NARFL [Nomascus leucogenys]
Length = 476
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 182/389 (46%), Positives = 249/389 (64%), Gaps = 25/389 (6%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V++S+SPQSRASLA F ++P +KLT+F K +GV +FDT+ SR +L+E+ EF
Sbjct: 110 RLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSLLESQREF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R+++ + +LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ +G+ +K
Sbjct: 170 VQRFQRQADC-----RQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLT
Sbjct: 225 DFFAQQQRLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEVL L++ + V+ L +PLD + + E G SGGY E VFRHAA+ LFG
Sbjct: 274 TGEVLRLLEEEGVSLPDLLPAPLDSLYSGASAEEPTSHRGGGSGGYLEHVFRHAARELFG 333
Query: 258 KVIEGHLEFKTI---RNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
H+ T RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +
Sbjct: 334 I----HVTNPTCAPPRNKDFQEVTLEKEGQVLLHFAMVYGFRNIQNLVQRLKRGRCPYHY 389
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLE 374
VEVMACPSGCLNGGGQ++ P + +EL++ +E +Y V P P V+ LY WL+
Sbjct: 390 VEVMACPSGCLNGGGQLQ-APDRPSRELLQHVERLY-GMVRAEAPEDAPGVQELYTHWLQ 447
Query: 375 QPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
SE A + +HT+YH V K+ T W
Sbjct: 448 GTDSECAGRLLHTQYHAVEKASTGLGIRW 476
>gi|114660220|ref|XP_510719.2| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL isoform 7
[Pan troglodytes]
gi|397474843|ref|XP_003808866.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL [Pan
paniscus]
gi|410287800|gb|JAA22500.1| nuclear prelamin A recognition factor-like [Pan troglodytes]
Length = 476
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 182/393 (46%), Positives = 254/393 (64%), Gaps = 19/393 (4%)
Query: 11 LSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTL 70
++ ++ + V++S+SPQSRASLA F ++P +KLT+F K +GV +FDT+ SR +L
Sbjct: 103 MAAPSQQRLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSL 162
Query: 71 IEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 130
+E+ EF+ R++ + +LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ
Sbjct: 163 LESQREFVRRFRGQADC-----RQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQ 217
Query: 131 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 190
+G+ +K Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD
Sbjct: 218 VMGSLVKDFFAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD------ 267
Query: 191 EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH 250
VD VLTTGEV L++ + V+ LE +PLD + + E G SGGY E VFRH
Sbjct: 268 -VDCVLTTGEVFRLLEEEGVSLPDLEPAPLDSLCSGASAEEPSSHRGGGSGGYLEHVFRH 326
Query: 251 AAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
AA+ LFG + + +K +RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C
Sbjct: 327 AARELFGIHV-AEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRC 385
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYD 370
Y +VEVMACPSGCLNGGGQ++ P + +EL++ +E +Y V P P VR LY
Sbjct: 386 PYHYVEVMACPSGCLNGGGQLQ-APDRPSRELLQHVERLY-GMVRAEAPEDAPGVRELYT 443
Query: 371 EWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
WL+ SE A + +HT+YH V K+ T W
Sbjct: 444 HWLQGTDSECAGRLLHTQYHAVEKASTGLGIRW 476
>gi|410340689|gb|JAA39291.1| nuclear prelamin A recognition factor-like [Pan troglodytes]
Length = 483
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 182/393 (46%), Positives = 254/393 (64%), Gaps = 19/393 (4%)
Query: 11 LSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTL 70
++ ++ + V++S+SPQSRASLA F ++P +KLT+F K +GV +FDT+ SR +L
Sbjct: 110 MAAPSQQRLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRHFSL 169
Query: 71 IEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 130
+E+ EF+ R++ + +LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ
Sbjct: 170 LESQREFVRRFRGQADC-----RQALPLLASACPGWICYAEKTHGSFILPHISTARSPQQ 224
Query: 131 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 190
+G+ +K Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD
Sbjct: 225 VMGSLVKDFFAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD------ 274
Query: 191 EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH 250
VD VLTTGEV L++ + V+ LE +PLD + + E G SGGY E VFRH
Sbjct: 275 -VDCVLTTGEVFRLLEEEGVSLPDLEPAPLDSLCSGASAEEPSSHRGGGSGGYLEHVFRH 333
Query: 251 AAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
AA+ LFG + + +K +RN DF+EV LE EG+ LL FA+ YGF+N+QN+V+++K +C
Sbjct: 334 AARELFG-IHVAEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRC 392
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYD 370
Y +VEVMACPSGCLNGGGQ++ P + +EL++ +E +Y V P P VR LY
Sbjct: 393 PYHYVEVMACPSGCLNGGGQLQ-APDRPSRELLQHVERLY-GMVRAEAPEDAPGVRELYT 450
Query: 371 EWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
WL+ SE A + +HT+YH V K+ T W
Sbjct: 451 HWLQGTDSECAGRLLHTQYHAVEKASTGLGIRW 483
>gi|73959191|ref|XP_547207.2| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL isoform 1
[Canis lupus familiaris]
Length = 476
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 178/386 (46%), Positives = 253/386 (65%), Gaps = 19/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V++S+SPQSRASLA F +SP +KLT F K +GV +FDT+ SR+ +L+E+ EF
Sbjct: 110 RLVVVSVSPQSRASLAARFQLSPTDTARKLTAFFKKIGVHYVFDTAFSRNFSLLESQREF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R++ + S +LP+L+SACPGWICYAEK G++++PY+S+ +SPQQ +G+ +K
Sbjct: 170 VQRFR-----EQTNSTQALPVLTSACPGWICYAEKTHGNFLIPYLSTARSPQQVMGSLVK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD IYHVTVMPCYDKKLEA+R DF +QE RD VD V+T
Sbjct: 225 DFFAQQQHLTPDRIYHVTVMPCYDKKLEASRPDFF----NQEHQTRD-------VDCVVT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV L++ + V+ LE +PLD + +++ + G SGGY E VF+HAA+ LFG
Sbjct: 274 TGEVFKLLEEEGVSLSELEPAPLDSLCSSMSAQEPSSHRGGGSGGYLEHVFQHAARELFG 333
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
++ + ++ +RN DF+EV LE EG+ LL FA YGF+N+QN+V+K+K +C Y +VEV
Sbjct: 334 IHVD-EVTYRPLRNKDFQEVTLEKEGRVLLHFAAAYGFRNIQNLVQKLKRGRCPYHYVEV 392
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACP+GCLNGGGQ+K P KEL++ +E +Y V P P V+ LY WL+ G
Sbjct: 393 MACPAGCLNGGGQLK-APDMPSKELLQQVEMLY-GMVRTEVPENVPGVQELYRSWLQGEG 450
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
SE+A + +HT YH V K+ ++ W
Sbjct: 451 SEQAGRLLHTSYHAVEKASSSLSIRW 476
>gi|66803034|ref|XP_635360.1| nuclear prelamin A recognition factor-like protein [Dictyostelium
discoideum AX4]
gi|74851536|sp|Q54F30.1|NARF_DICDI RecName: Full=Probable cytosolic Fe-S cluster assembly factor narfl
gi|60463676|gb|EAL61858.1| nuclear prelamin A recognition factor-like protein [Dictyostelium
discoideum AX4]
Length = 522
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 191/447 (42%), Positives = 269/447 (60%), Gaps = 55/447 (12%)
Query: 1 MLEKQSLDEFL----------SNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTF 50
++ QS+ EFL +N ++ K ++I+LSPQSRASLA HF IS L V KKL TF
Sbjct: 87 LITAQSISEFLLNVNNNNDSNNNQDEKKTIVITLSPQSRASLASHFKISTLSVVKKLKTF 146
Query: 51 LKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQS--QESDDERSNS----SLPMLSSACP 104
K L + +FD+S SRD +L+E+ EF+ARYK++ ++DE + LPMLSSACP
Sbjct: 147 FKKLNINYLFDSSFSRDFSLLESAAEFVARYKKTYINNNNDEETGKLEPFPLPMLSSACP 206
Query: 105 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKL-------------------- 144
GWICYAEK G +ILP+IS+ KSPQQ +G +K++ +K+
Sbjct: 207 GWICYAEKTHGEFILPFISTTKSPQQIMGTLVKYYFTEKILDNNTNNNNNNNNNNNNNNS 266
Query: 145 GFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDL 204
+P IYHVT+MPCYDKKLEA+R DF Y D + +VD VL+T E+LDL
Sbjct: 267 KIKPSNIYHVTIMPCYDKKLEASRNDF----------YND-IFKTKDVDCVLSTTEILDL 315
Query: 205 IQLKAVNFEALEE-SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGH 263
+ K ++F +LEE + +++ + Y + GSSGGY E ++++AAK LF I
Sbjct: 316 FKEKEIDFLSLEEDNSIEEQFFQLSPSNQFYSINGSSGGYLEFIYKYAAKELFNVDIVEP 375
Query: 264 LEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMR-------KCDYQFVE 316
+++K RN DF+EV+LE++GK +L FA YGF+N+QNIVRK+K Y FVE
Sbjct: 376 IQYKIGRNQDFKEVSLEIDGKKVLNFAQAYGFRNIQNIVRKIKTNITTKKDTNSQYDFVE 435
Query: 317 VMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQP 376
+MACPSGC+NGGGQIK + K ++ E Y ENV+ P N V+++Y+ WL
Sbjct: 436 IMACPSGCINGGGQIKSDAIKENKAILLDSEEKYNENVIFRQPIDNQSVQNIYNTWLNGC 495
Query: 377 GSEKAKKHVHTEYHPVVKSITAQLHNW 403
S +K ++HT+YH + K+ A W
Sbjct: 496 FSTDSKTNLHTQYHRIEKTTNALNIKW 522
>gi|395835676|ref|XP_003790801.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL [Otolemur
garnettii]
Length = 476
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 175/389 (44%), Positives = 250/389 (64%), Gaps = 19/389 (4%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
++ + V++S+SPQSRASLA ++P +KLT+F K +G +FDT+ SR+ +L+E+
Sbjct: 107 SQQRLVVVSVSPQSRASLAVQLQLNPTDTARKLTSFFKKIGAHFVFDTAFSRNFSLLESQ 166
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
EF+ R+++ S +LP+L+SACPGWICYAEK S+I+PY+S+ +SPQQ +G+
Sbjct: 167 REFVQRFREQASSPQ-----ALPVLASACPGWICYAEKTHSSFIIPYLSTARSPQQVMGS 221
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
+K + Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD
Sbjct: 222 LVKDFLAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEYQTRD-------VDC 270
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
VLTTGEV L++ + + LE + LD + ++V E G SGGY E VFRHAA+
Sbjct: 271 VLTTGEVFKLLEEEGILLSELEPALLDGLSSSVSAEEPTSHRGGGSGGYLEHVFRHAARE 330
Query: 255 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
LFG + + ++ +RN DF+EV LE G+ LL+FA YGF+N+QN+V+K+K +C Y +
Sbjct: 331 LFGIHV-AEVTYRPLRNKDFQEVTLEQGGQVLLRFAAVYGFRNIQNLVQKLKRGRCPYHY 389
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLE 374
VEVMACP+GCLNGGGQ+K S +EL++ +E +Y V P P V LY +WL+
Sbjct: 390 VEVMACPAGCLNGGGQLKALDTPS-RELLQHVERLY-SMVRTEAPEDVPGVWELYQQWLQ 447
Query: 375 QPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
SE+A +HT+YH V K+ + W
Sbjct: 448 GEASERASHLLHTQYHAVEKASSGLSIRW 476
>gi|74211319|dbj|BAE26421.1| unnamed protein product [Mus musculus]
Length = 492
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 183/402 (45%), Positives = 253/402 (62%), Gaps = 35/402 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V++S+SPQSRASLA F + P +KLT+F K +GV +FDT+ +R+ +L+E+ EF
Sbjct: 110 RLVVVSISPQSRASLAARFRLDPTDTARKLTSFFKKIGVHFVFDTAFARNFSLLESQKEF 169
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R+++ S + +LP+L+SACPGWICYAEK G++ILPYIS+ +SPQQ +G+ +K
Sbjct: 170 VQRFREQANSRE-----ALPVLASACPGWICYAEKTHGNFILPYISTARSPQQVMGSLVK 224
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD+IYHVTVMPCYDKKLEA+R DF +QE RD VD VLT
Sbjct: 225 DFFAQQQLLTPDKIYHVTVMPCYDKKLEASRPDFF----NQEYQTRD-------VDCVLT 273
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKM----------------LTNVDDEGHLYGVAGSSG 241
TGEV L++ + V+ LE +PLD + ++V E G SG
Sbjct: 274 TGEVFRLLEEEGVSLTELEPAPLDGLDLSCVAPPALTRPSPRTSSVSAEEPSSHRGGGSG 333
Query: 242 GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNI 301
GY E VFRHAA+ LFG + + ++ +RN DF+EV LE EG+ LL+FA+ YGF+N+QN+
Sbjct: 334 GYLEHVFRHAAQELFGIHV-AEVTYQPLRNKDFQEVTLEREGQVLLRFAVAYGFRNIQNL 392
Query: 302 VRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK 361
V+K+K +C Y +VEVMACPSGCLNGGGQ+K P EL++ LE +Y V P
Sbjct: 393 VQKLKRGRCPYHYVEVMACPSGCLNGGGQLK-APDTEGSELLQQLERLY-SMVRTEAPED 450
Query: 362 NPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
P V+ LY WL+ SE+A + +HT+YH V K + W
Sbjct: 451 APGVQELYQHWLQGEDSERASRLLHTQYHAVEKPSSGLSIRW 492
>gi|449281351|gb|EMC88431.1| Cytosolic Fe-S cluster assembly factor NARFL [Columba livia]
Length = 478
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 186/391 (47%), Positives = 261/391 (66%), Gaps = 21/391 (5%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLG--VKSIFDTSCSRDLTLIE 72
N+ K V+IS+SPQSRASLA + + +KLT F KSLG V +FDT+ SR+ +L+E
Sbjct: 107 NEQKLVVISVSPQSRASLAAKCKLGVQETAQKLTAFFKSLGKCVHYVFDTTFSRNFSLLE 166
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EF+ R+++ +S+D+++ LPML+SACPGWICYAEK GS+I+PYIS+ KSPQQ +
Sbjct: 167 SQREFVKRFQK--QSEDKKA---LPMLASACPGWICYAEKTHGSFIIPYISTTKSPQQVM 221
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ IK H ++ PD IYHVTVMPCYDKKLEA+R DF +QE RD V
Sbjct: 222 GSLIKGHFAEQQHLTPDRIYHVTVMPCYDKKLEASRPDFF----NQEYQTRD-------V 270
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D V+TTGEVL L++ + V+ ++ + LD M + E G SGGY E ++++AA
Sbjct: 271 DCVITTGEVLKLLEQEGVSLSDVDPAALDTMFGSAAGEELTGHAGGGSGGYLEHIYKYAA 330
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LFG ++ +++K ++N DF+EV LE +G LL+FAL YGF+N+QN+V+K+K + Y
Sbjct: 331 KELFGIQVD-TIQYKPLKNKDFQEVTLEKDGAVLLQFALAYGFRNIQNLVQKLKRGRSPY 389
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
+VEVMACPSGCLNGGGQIK G+S KE ++ +E +Y E++ P +N V+ LY++W
Sbjct: 390 HYVEVMACPSGCLNGGGQIKLD-GESSKEQLQQVERLY-ESLQTEVPEENRAVQELYEQW 447
Query: 373 LEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
L GS KA + +HT YH V K+ W
Sbjct: 448 LGGTGSGKAAEALHTGYHAVEKTSAGFNIKW 478
>gi|426254961|ref|XP_004021138.1| PREDICTED: LOW QUALITY PROTEIN: cytosolic Fe-S cluster assembly
factor NARFL [Ovis aries]
Length = 491
Score = 337 bits (865), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 178/389 (45%), Positives = 250/389 (64%), Gaps = 19/389 (4%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
++ K V+IS+SPQSRASLA F ++P +KLT F K +G +FDT+ SR+ +L+E+
Sbjct: 122 DQQKLVVISVSPQSRASLAVRFQLNPTDTARKLTAFFKKIGAHYVFDTAFSRNFSLLESQ 181
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
EF+ R++ + +LP+L+SACPGWICYAEK G+ +LP+IS+ +SPQQ +G+
Sbjct: 182 REFVRRFRGQANPEQ-----ALPVLTSACPGWICYAEKTHGNTLLPHISTARSPQQVMGS 236
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
+K Q+ PD++YHVTVMPCYDKKLEA+R DF SQE RD VD
Sbjct: 237 LVKDFFAQQQRLTPDKVYHVTVMPCYDKKLEASRPDFF----SQEHQTRD-------VDC 285
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V+TTGEV L++ + V+ LE +PLD + ++ + G SGGY E VFRHAA+
Sbjct: 286 VITTGEVFKLLEEEGVSLSELEPAPLDSLCSSASAQEPTSXGGGGSGGYLEHVFRHAAQE 345
Query: 255 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
LFG + + ++ +RN D +EV LE EG+ LL FA YGF+N+QN+V+K+K +C Y +
Sbjct: 346 LFGIHVT-EVTYRPLRNKDLQEVILEREGQVLLHFAAAYGFRNIQNLVQKLKRGRCPYHY 404
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLE 374
VEVMACP+GCLNGGGQ+K P KEL++ +E +Y V P P V+ LY+ WL+
Sbjct: 405 VEVMACPAGCLNGGGQLK-APDTPGKELLQQVERLY-GLVRTEAPEDAPGVQELYERWLQ 462
Query: 375 QPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
GSE+A + +HT YH V K+ + W
Sbjct: 463 GAGSERAGRLLHTSYHAVEKAGSGLSIRW 491
>gi|291226566|ref|XP_002733248.1| PREDICTED: nuclear prelamin A recognition factor-like [Saccoglossus
kowalevskii]
Length = 479
Score = 337 bits (864), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 175/388 (45%), Positives = 248/388 (63%), Gaps = 19/388 (4%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K K +I+S+SPQSRASLA +G+S K+T F K++GV +FDT+ +RD +LIE+
Sbjct: 111 KEKVIIVSVSPQSRASLAAKYGLSVYDAAAKITGFFKNIGVHYVFDTTFTRDFSLIESGR 170
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
EFI R+K+S + SLPML+SACPGW+CYAEK GSYILPYIS+ KSPQQ +G+
Sbjct: 171 EFITRFKKSTQ------KGSLPMLASACPGWVCYAEKTHGSYILPYISTTKSPQQIMGSL 224
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+K + +K D+IYHVTVMPC+DKKLEA+R+DF + YR +VD V
Sbjct: 225 VKDYFAKKHNKTADQIYHVTVMPCFDKKLEASRQDFY------NDIYRTR-----DVDCV 273
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
+T+GEV +++ + V +E LD + T ++ + SGGY E + +HAA L
Sbjct: 274 ITSGEVEVMLEKEGVLLADVESHDLDTIFTRSENNEVIGHGGSGSGGYLEYILKHAALEL 333
Query: 256 FGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
+G ++ +++K +RN DF+EV LEV GK LKFA+ GF+N+QN+V+K+K K Y FV
Sbjct: 334 YGHQVDS-IQYKMLRNKDFKEVTLEVNGKVELKFAIANGFRNIQNLVQKIKRGKSPYHFV 392
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQ 375
EVMACPSGCLNGGGQI+ + Q +L+ +E IY + P +N + +LY +WL
Sbjct: 393 EVMACPSGCLNGGGQIRAENLQGANDLLTKVEEIY-HSAQTRTPQENGAMETLYADWLGG 451
Query: 376 PGSEKAKKHVHTEYHPVVKSITAQLHNW 403
S+K + +HT+YH + K +A W
Sbjct: 452 MDSDKMRTMLHTQYHEIEKDTSALNLKW 479
>gi|163915151|ref|NP_001106557.1| cytosolic Fe-S cluster assembly factor narfl [Xenopus (Silurana)
tropicalis]
gi|259511276|sp|A8WH18.1|NARFL_XENTR RecName: Full=Cytosolic Fe-S cluster assembly factor narfl;
AltName: Full=Nuclear prelamin A recognition factor-like
protein
gi|159155500|gb|AAI54938.1| LOC100127749 protein [Xenopus (Silurana) tropicalis]
Length = 476
Score = 337 bits (863), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 181/378 (47%), Positives = 246/378 (65%), Gaps = 19/378 (5%)
Query: 26 PQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQ 85
PQS ASLA F + +KLT F K LGV +FDT+ SR+ +L+E+ EFI R+K+ +
Sbjct: 118 PQSWASLAARFNLIMQDTAQKLTAFFKQLGVHHVFDTNFSRNFSLLESQREFIQRFKRQK 177
Query: 86 ESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLG 145
E SLPML+SACPGWICYAEK GS+ILPYISS KSPQQ +G+ +K H ++
Sbjct: 178 ED-----KKSLPMLASACPGWICYAEKTHGSFILPYISSTKSPQQVMGSLVKSHFAKEKN 232
Query: 146 FRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLI 205
+P++IYHVTVMPCYDKKLEA+R DF Y E E EVD V+TTGEVL ++
Sbjct: 233 LKPNQIYHVTVMPCYDKKLEASRPDF----------YNQE-YETREVDCVITTGEVLRML 281
Query: 206 QLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLE 265
+ + ++ ++ SPLD + + E + G SGGY E VFRHAA+ LFG ++ +
Sbjct: 282 EQEGLSLSDVDPSPLDTLFGSAVQEEPVGHQGGGSGGYLEHVFRHAAQELFGVHVDT-VV 340
Query: 266 FKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCL 325
+K ++N DF+EV LE +G +L FAL YGF+N+QN+V+K+K +C Y +VEVMACPSGCL
Sbjct: 341 YKPLKNKDFQEVTLEQDGNVVLHFALAYGFRNIQNLVQKLKRGRCPYHYVEVMACPSGCL 400
Query: 326 NGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHV 385
NGGGQIK + G+ K+L++ +E +Y V P + V LY +WLE S KA++ +
Sbjct: 401 NGGGQIKAE-GEGSKDLLQRVEDLY-NTVRTERPEEREEVAQLYGDWLEDKDSAKARQAL 458
Query: 386 HTEYHPVVKSITAQLHNW 403
HT+YH V K + W
Sbjct: 459 HTQYHAVEKINSGLTIKW 476
>gi|156545553|ref|XP_001605725.1| PREDICTED: probable cytosolic Fe-S cluster assembly factor
AAEL012261-like [Nasonia vitripennis]
Length = 484
Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 170/389 (43%), Positives = 249/389 (64%), Gaps = 20/389 (5%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K +++SLS Q SLAE + ++P + LT + KS+G + D + + DL+L+E+ EF
Sbjct: 113 KFIVVSLSIQPILSLAERYKLTPEEAALHLTGYFKSMGADMVLDMTVAEDLSLVESAKEF 172
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ RYK ++E S + LPML+S+CPGW+CYAEK G++ILPYIS KSPQQ +G+ +K
Sbjct: 173 VERYKAAKEG----SKNQLPMLASSCPGWVCYAEKTHGNFILPYISVTKSPQQIMGSLVK 228
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+H+ G P+++YHVT+MPCYDKKLEA+REDF L E +VD V+T
Sbjct: 229 YHLADVQGLSPEQVYHVTLMPCYDKKLEASREDFYNSLK-----------ETRDVDCVIT 277
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNV--DDEGHLYGVAGS-SGGYAETVFRHAAKT 254
+ E+ ++ + + + ++ ++K + ++ G L G GS SGGYA+ +F +AAK
Sbjct: 278 SIELEQMLTQQDKSLQDFDKGEIEKPFKTMELENSGVLLGHQGSGSGGYADFIFHYAAKY 337
Query: 255 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
LF +V + LE+K++RN DF+E LE +G+ LLKFA+ GF+N+QN+V+K+K K Y +
Sbjct: 338 LF-QVTDAKLEYKSLRNPDFQEAVLEKDGQVLLKFAIANGFRNIQNLVQKLKRGKSPYDY 396
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLE 374
VEVMACP+GCLNGG QI+P+ G P+EL LE Y + +DP KN V LY WLE
Sbjct: 397 VEVMACPTGCLNGGAQIRPQDGTQPRELALKLENEY-HQLPKSDPEKNQAVADLYKTWLE 455
Query: 375 QPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
S+KA ++HT+YH + K A W
Sbjct: 456 GENSDKANAYLHTQYHEIEKMNVALSIKW 484
>gi|348686504|gb|EGZ26319.1| hypothetical protein PHYSODRAFT_258585 [Phytophthora sojae]
Length = 521
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 182/429 (42%), Positives = 258/429 (60%), Gaps = 48/429 (11%)
Query: 1 MLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKS 58
++ +QS E L + K K V+++LSPQSRASLA HF + + V +KL T ++LGV
Sbjct: 95 LISQQSFKEMLDVLAAKKHKHVVVTLSPQSRASLAAHFEMPVVVVHRKLVTLFRNLGVNL 154
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSS----------------------- 95
+ D++CS D L+E+ EF+ RY Q++ R SS
Sbjct: 155 VIDSTCSGDFALLESRAEFLHRYHNQQKTVWARPPSSVAVSSAKTEYLEPSTSANPLQDP 214
Query: 96 ---LPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIY 152
+PML+S+CPGWICYAEK + I P+I + KSPQQ G+ IK + + G P E+Y
Sbjct: 215 LRAMPMLASSCPGWICYAEKSQPNAI-PFIDTTKSPQQIAGSIIKRFVSGEHGVAPSEVY 273
Query: 153 HVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF 212
HV VMPC+DKKLEA+R+DF E+ +D VD VL T E+++LI+ V+F
Sbjct: 274 HVAVMPCFDKKLEASRKDF----QDPEDATKD-------VDCVLATTEIIELIESLNVDF 322
Query: 213 EALEE---SPLDKMLTNVDDEGHLY---GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEF 266
+LE +P + ML+ + ++G + V SSGG+ E +FR AAK LF + G LE+
Sbjct: 323 ASLEPANLTPEEVMLSGISEDGSVVLGSNVNASSGGHLEHIFRFAAKELFNVEVTGPLEY 382
Query: 267 KTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLN 326
RN DFREV+L +EGK +LKFA+ YGF+N+Q+I+ K++ KC Y +VE+MACPSGCLN
Sbjct: 383 VAGRNPDFREVSLVIEGKEVLKFAVAYGFRNIQSIMTKIRRNKCPYHYVEIMACPSGCLN 442
Query: 327 GGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQ-PGSEKAKKHV 385
GGGQIKPK EL+ + T E + + DP NP V +Y+++L P S+ A+ +
Sbjct: 443 GGGQIKPKSTLLASELLDNV-TSRFEELQVRDPTANPAVNYVYEKYLGGVPFSDAARAVL 501
Query: 386 HTEYHPVVK 394
HT+YH V K
Sbjct: 502 HTQYHAVPK 510
>gi|307103448|gb|EFN51708.1| hypothetical protein CHLNCDRAFT_139858 [Chlorella variabilis]
Length = 545
Score = 327 bits (837), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 181/475 (38%), Positives = 253/475 (53%), Gaps = 83/475 (17%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSI 59
+L+ QS E L + + V++SLSPQS A LA G+ + +L FL+ LG ++
Sbjct: 82 LLQHQSAGELLQRLADPSWTVVVSLSPQSVAVLAALHGLPAAECAARLVAFLRQLGAAAV 141
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQES-----------------------------DDE 90
FD + +R L L EA +EF+ RY QS
Sbjct: 142 FDIAAARQLALAEAAHEFVQRYSQSARGTAALSAAAAAAAAAAGEDAMDVDAAVAGRGSR 201
Query: 91 RSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDE 150
LPML+SACPGW+CYAEK G ++LPYI++ KSPQ +G +K C G P
Sbjct: 202 DGGGPLPMLASACPGWVCYAEKTHGEHVLPYIATGKSPQAVMGTLVKRRWCMAAGLLPAW 261
Query: 151 IYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAV 210
+YH T+MPCYDKKLEAAREDF G ++PE D VL T E+ +L++ +
Sbjct: 262 VYHCTIMPCYDKKLEAAREDFNL-----------PGTQVPETDCVLATTELQELLEQRQA 310
Query: 211 NFEALEESPLDKML-----------------------------------TNVDDEGHLYG 235
+ +L+ +P D M+ ++ D G
Sbjct: 311 DLGSLQGAPFDSMVPLPAAGAAAAPACNGSDGAGASSNGWHAAPKPPTSSSGSDAGGTLP 370
Query: 236 VAGSSGGYAETVFRHAAKTLFGKVI-EGHLEFKTIRNSDFREVALEVEGKT--LLKFALC 292
+ SGGY E VFR AA+ LFG+ + G L + RN+D REV LE G LL+FA
Sbjct: 371 ASSGSGGYLEYVFRAAARQLFGRQLPAGPLAMRVGRNADLREVTLEAPGGGPPLLRFAAA 430
Query: 293 YGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE 352
YGF+N+Q ++RKVK+ +C+Y +VEVMACPSGCLNGGGQ KP GQ+ +L++ LET+Y +
Sbjct: 431 YGFRNIQGLMRKVKLGRCEYDYVEVMACPSGCLNGGGQPKPAAGQTSAQLLEQLETLYAD 490
Query: 353 ---NVMLADPFKNPLVRSLYDEWLE-QPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
P +P V+ LY EW++ QPGSE A++ +H +YH K++TA L +W
Sbjct: 491 AGSGHGAVQPDADPAVQQLYHEWVQGQPGSEAARQLLHMQYHKREKTVTATLADW 545
>gi|26451001|dbj|BAC42607.1| unknown protein [Arabidopsis thaliana]
gi|31711720|gb|AAP68216.1| At4g16440 [Arabidopsis thaliana]
Length = 203
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 146/203 (71%), Positives = 180/203 (88%), Gaps = 1/203 (0%)
Query: 202 LDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIE 261
+DLI+LK V+F+ LEESPLD++LTNV +EG LYGVAGSSGGYAET+FRHAAK LFG+ IE
Sbjct: 1 MDLIKLKGVDFKDLEESPLDRVLTNVTEEGDLYGVAGSSGGYAETIFRHAAKALFGQTIE 60
Query: 262 GHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACP 321
G LEFKT+RNSDFREV L++EGKT+LKFALCYGFQNLQNIVR+VK RKCDYQ+VE+MACP
Sbjct: 61 GPLEFKTLRNSDFREVTLQLEGKTVLKFALCYGFQNLQNIVRRVKTRKCDYQYVEIMACP 120
Query: 322 SGCLNGGGQIKPKPGQSPKELIKTLETIYLENVML-ADPFKNPLVRSLYDEWLEQPGSEK 380
+GCLNGGGQIKPK GQS KELI +LE Y+ + L DP++NP + L++EWL++PGS +
Sbjct: 121 AGCLNGGGQIKPKTGQSQKELIHSLEATYMNDTTLNTDPYQNPTAKRLFEEWLKEPGSNE 180
Query: 381 AKKHVHTEYHPVVKSITAQLHNW 403
AKK++HT+YHPVVKS+T+QL+NW
Sbjct: 181 AKKYLHTQYHPVVKSVTSQLNNW 203
>gi|340369769|ref|XP_003383420.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like
[Amphimedon queenslandica]
Length = 486
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 161/378 (42%), Positives = 241/378 (63%), Gaps = 25/378 (6%)
Query: 32 LAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDER 91
LA +F + ++ KL +FLK LGV +FD + SRD++LIE+ EF+ R++ S
Sbjct: 128 LAVNFKKTMEEMSSKLVSFLKQLGVDFVFDITFSRDISLIESAQEFVRRFQGSSNP---- 183
Query: 92 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 151
S+PML+SACPGW+CYAEK G +ILPYIS+ KSPQQ +G+ +K H+ + PD++
Sbjct: 184 --GSIPMLASACPGWVCYAEKTHGDFILPYISTTKSPQQIMGSLVKDHLAKAHRKMPDQV 241
Query: 152 YHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN 211
YHVT+MPCYDKKLEA+REDF L S +VD V+TTGEV ++ V+
Sbjct: 242 YHVTIMPCYDKKLEASREDFYHDLYSTR-----------DVDCVITTGEVEIMLNEHEVD 290
Query: 212 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 271
++L +P+D+ + D + + SGGY +F++A K LFG+ ++ +E+K +RN
Sbjct: 291 IDSLPLTPMDEPFCSYDKDQLVSHEGSGSGGYLNYIFKYACKELFGETVDS-IEYKVLRN 349
Query: 272 SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQI 331
DF E +L+V+GK +LKFA YGF+N+QN+V+K+K ++C Y ++EVMACPSGCLNGGGQI
Sbjct: 350 KDFYECSLQVDGKEVLKFAAAYGFRNIQNVVQKLKRKRCGYHYIEVMACPSGCLNGGGQI 409
Query: 332 KPKPGQS------PKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHV 385
K + + KE ++ ++ Y +++ P +NP + +Y EWLE S+K + +
Sbjct: 410 KNEEDKGSASQLLSKENLQNVDAAY-KSLRPRKPTENPKLDLIYKEWLEDSNSDKVQSML 468
Query: 386 HTEYHPVVKSITAQLHNW 403
HT+YH + K +A W
Sbjct: 469 HTKYHAIEKFTSALTIKW 486
>gi|417410627|gb|JAA51783.1| Putative nuclear architecture related protein, partial [Desmodus
rotundus]
Length = 429
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 173/386 (44%), Positives = 240/386 (62%), Gaps = 19/386 (4%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V+IS+SPQSRASLA F ++P +KLT F K LG +FDT+ SR+ +L+E+ EF
Sbjct: 63 RLVVISVSPQSRASLAVRFQLNPTDTARKLTAFFKKLGAHYVFDTAFSRNFSLLESQREF 122
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R++ +LP+L+SACPGWICYAEK GS I+PYIS+ +SPQQ +G+ +K
Sbjct: 123 VRRFR-----GQATCKHALPVLTSACPGWICYAEKTHGSAIIPYISTARSPQQVMGSLVK 177
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD+IYHVTVMPCYDKKLEA+R DF QE RD VD V+T
Sbjct: 178 DFFAQQQRVTPDKIYHVTVMPCYDKKLEASRPDFF----RQEHQTRD-------VDCVIT 226
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
TGEV L++ + V+ LE +PLD + +N+ + G SGGY E VFRHAA+ LFG
Sbjct: 227 TGEVFKLLEEEGVSLAELEPAPLDSLYSNMSAQEPTSHSGGGSGGYLEHVFRHAAQELFG 286
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
++ + ++ + ++V + E ++ L FA YGF+N+QN+V+K+K +C Y +VEV
Sbjct: 287 IHVD-KVTYRXXXXXEGQQVTQQTEARSPLHFAAAYGFRNIQNLVQKLKRGRCPYHYVEV 345
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
MACPSGCLNGGGQ+K P KEL++ +E +Y V P P V+ LY WL G
Sbjct: 346 MACPSGCLNGGGQLK-APEVPDKELLQHVERLY-SMVRTEAPEDVPGVQELYQHWLHGEG 403
Query: 378 SEKAKKHVHTEYHPVVKSITAQLHNW 403
SE+ +HT YH V K+ ++ W
Sbjct: 404 SERTGCLLHTSYHAVEKASSSLSIRW 429
>gi|159470443|ref|XP_001693369.1| iron hydrogenase/prelamin A binding protein [Chlamydomonas
reinhardtii]
gi|158277627|gb|EDP03395.1| iron hydrogenase/prelamin A binding protein [Chlamydomonas
reinhardtii]
Length = 479
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 170/418 (40%), Positives = 253/418 (60%), Gaps = 24/418 (5%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSI 59
+L++QS DEFL+ + + AV++++SPQSRA+LA +FG+SP +L +LK LG ++
Sbjct: 71 LLQQQSGDEFLAKLADPTLAVVVTVSPQSRAALAAYFGLSPAATLARLAGWLKGLGAAAV 130
Query: 60 FDTSCSRDLTLIEACNEFIA---RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGS 116
+D + +RDL L+E EF+ R + E + LPM++SACPGW+CYAEK G+
Sbjct: 131 WDLTTARDLVLLEEAAEFVGSSGRPAAAVAGAVEEAPGPLPMMASACPGWVCYAEKTHGA 190
Query: 117 YILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLD 176
++PY+S+ +SPQ +G +K + G P +YHVTVMPCYDKKLEA+R++
Sbjct: 191 KVIPYMSTTRSPQGAMGGLVKSLVAAAWGVSPAALYHVTVMPCYDKKLEASRDELT---- 246
Query: 177 SQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGV 236
T DE + + ++ V+ + + D + E LYG+
Sbjct: 247 ----TTSDEAAAVAAGSVAVAAAGAGGGSDME-VDGGEVAAAAQDGGVLLPPSEDRLYGL 301
Query: 237 --AGSSGGYAETVFRHAAKTLFG-KVIEGHLEFKTIRNSDFREVALEVEG---KTLLKFA 290
A SSGGY++ VFR AA+ L G ++ G L ++ +RN+DF+E+ LEV +L+FA
Sbjct: 302 RDASSSGGYSDFVFRAAARELAGVELPAGPLPWRALRNADFQELTLEVPALGPGQVLRFA 361
Query: 291 LCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP--GQSPKELIKTLET 348
YGF+N+Q ++R+VKM +C YQ+VEVMACPSGCLNGGGQ KP+P G P++L++ +E
Sbjct: 362 RVYGFRNIQTLLRQVKMGRCAYQYVEVMACPSGCLNGGGQPKPRPGLGAGPQQLLEQVEA 421
Query: 349 IYL-ENVMLADPFKNPLVRSLYDEWL-EQPGSEKAKKHVHTEYHPVVKSI-TAQLHNW 403
Y E+V P NP V LY WL +PGS A++ +HT Y K++ TA + NW
Sbjct: 422 AYAHEDVAARWPTDNPAVALLYSRWLGGRPGSAAARRLLHTSYREREKTVNTAMVANW 479
>gi|350409304|ref|XP_003488687.1| PREDICTED: probable cytosolic Fe-S cluster assembly factor
AGAP009023-like [Bombus impatiens]
Length = 486
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 167/392 (42%), Positives = 245/392 (62%), Gaps = 30/392 (7%)
Query: 20 VIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
+++SLS Q+ S+A+H+ ++P Q KL + LG + D + + D L+E+ EFI
Sbjct: 117 IVVSLSVQAVLSIAKHYSLNPEQALNKLAGYFYQLGADIVLDMTVADDFALLESAKEFIE 176
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
RYK ++E + + LPMLSS+CPGW+CYAEK G++ILPYIS KSPQQ +G+ +K+H
Sbjct: 177 RYKAAKEG----AKNQLPMLSSSCPGWVCYAEKTHGNFILPYISVTKSPQQIMGSLVKYH 232
Query: 140 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
+ + + P+++YHVTVMPCYDKKLEA+REDF + E +RD VD V+T
Sbjct: 233 LAETMDLLPEQVYHVTVMPCYDKKLEASREDFY----NYERKFRD-------VDCVITPI 281
Query: 200 EVLDLI--------QLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHA 251
E+ ++ +++ E L ES ++ TN+ L SGGYAE + +A
Sbjct: 282 EIEQMLSEYNVSINEIREREVEKLFESQMEYFKTNL-----LGHSGSGSGGYAEFILHYA 336
Query: 252 AKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
AK LF + + +EFK +RN DF+E + +G TLL FA+ GF+N+QN+V+K+K KC
Sbjct: 337 AKHLFDET-DITVEFKNLRNPDFQEAVFQKDGCTLLTFAIANGFRNIQNLVQKLKRGKCS 395
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDE 371
Y +VEVMACP GCLNGG QI+P P+EL LE+IY E + ++P +N +V++LY +
Sbjct: 396 YDYVEVMACPCGCLNGGAQIRPSSNIQPRELALQLESIYRE-LPRSNPEQNTVVQNLYRD 454
Query: 372 WLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
WL ++KA + HT+YH + KS TA W
Sbjct: 455 WLGGECTDKALSYFHTQYHEIKKSDTALAIKW 486
>gi|307191772|gb|EFN75214.1| Nuclear prelamin A recognition factor-like protein [Harpegnathos
saltator]
Length = 484
Score = 317 bits (811), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 168/389 (43%), Positives = 246/389 (63%), Gaps = 20/389 (5%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K +++SLS Q SLA+ + ++P Q ++L F LG S+ D + + D L+EA EF
Sbjct: 113 KYIVVSLSVQPILSLAQRYELTPEQALRRLAGFFYQLGADSVLDMTMADDFALLEAAKEF 172
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
I RYK S+E + + LPMLSS+CPGW+CYAEK G++ILP+IS KSPQQ +G+ +K
Sbjct: 173 IERYKASKEG----AKNQLPMLSSSCPGWVCYAEKTHGNFILPHISITKSPQQIMGSLVK 228
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+ + + +G ++IYHVTVMPCYDKKLEA+REDF Q Q+ET RD VD V+T
Sbjct: 229 YRLAEIMGLSSEQIYHVTVMPCYDKKLEASREDFYNQ---QKET-RD-------VDCVIT 277
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDE--GHLYGVAGS-SGGYAETVFRHAAKT 254
+ E+ ++ + +E +++ + +E L+G GS SGGYA+ +FR+AAK
Sbjct: 278 SIELEQMLNEYDLMLSEADEGEIEQPFGSYSEEIDNKLWGHRGSGSGGYADFIFRYAAKH 337
Query: 255 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
LF + ++FKT+RN DF+E L+ + LLKFA+ GF+N+QNIV+K+K KC Y +
Sbjct: 338 LFDEE-NVTVDFKTLRNPDFQEAELKKNNEVLLKFAIINGFRNIQNIVQKMKRGKCAYDY 396
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLE 374
VE+MACP GCLNGG QI+P+ P+EL TLE +Y + ++P +N + ++LY WL
Sbjct: 397 VEIMACPCGCLNGGAQIRPEGNVQPRELALTLENMY-HKLPTSNPEENKVAQNLYKTWLG 455
Query: 375 QPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
++K + T+YH + K TA W
Sbjct: 456 GEHTDKVGAYFSTQYHEIQKMNTALAIKW 484
>gi|340713495|ref|XP_003395278.1| PREDICTED: probable cytosolic Fe-S cluster assembly factor
AGAP009023-like [Bombus terrestris]
Length = 486
Score = 317 bits (811), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 171/407 (42%), Positives = 248/407 (60%), Gaps = 35/407 (8%)
Query: 5 QSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSC 64
QS D+ LS +++SLS Q+ S+A+H+ ++P Q KL + LG + D +
Sbjct: 107 QSKDDALSTF-----IVVSLSVQAVLSIAKHYSLNPEQALNKLAGYFHQLGADIVLDMTV 161
Query: 65 SRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
+ D L+E+ EFI RYK +++ + LPMLSS+CPGW+CYAEK G++ILPYIS
Sbjct: 162 ADDFALLESAKEFIERYKAAKKG----AKGQLPMLSSSCPGWVCYAEKTHGNFILPYISV 217
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
KSPQQ +G+ +K+H+ + +G P+++YHVTVMPCYDKKLEA+REDF + E +RD
Sbjct: 218 TKSPQQIMGSLVKYHLAETMGLLPEQVYHVTVMPCYDKKLEASREDFY----NYERKFRD 273
Query: 185 EGLEIPEVDSVLTTGEVLDLI--------QLKAVNFEALEESPLDKMLTNVDDEGHLYGV 236
VD V+T E+ ++ +++ E L ES ++ TN+ L
Sbjct: 274 -------VDCVITPIEIKQMLSEYNVPINEIREREVEKLFESQMENFKTNL-----LGHS 321
Query: 237 AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQ 296
SGGYAE + +AAK LF + + +EFK +RN DF+E + +G TLL FA+ GF+
Sbjct: 322 GSGSGGYAEFILHYAAKHLFDET-DITVEFKNLRNPDFQEAVFQKDGHTLLTFAIANGFR 380
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVML 356
N+QN+V+K+K KC Y +VEVMACP GCLNGG QI+P P+EL LE+IY E +
Sbjct: 381 NIQNLVQKLKRGKCSYDYVEVMACPCGCLNGGAQIRPSSNIQPRELALQLESIYRE-LPR 439
Query: 357 ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
++P +N V++LY WL ++KA + HT+YH + KS A W
Sbjct: 440 SNPEQNTAVQNLYRNWLGGECTDKALSYFHTQYHEIKKSDIALAIKW 486
>gi|189240985|ref|XP_001808932.1| PREDICTED: similar to nitrate, fromate, iron dehydrogenase
[Tribolium castaneum]
gi|270012992|gb|EFA09440.1| hypothetical protein TcasGA2_TC010652 [Tribolium castaneum]
Length = 484
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 175/392 (44%), Positives = 244/392 (62%), Gaps = 22/392 (5%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
+ K +++SLS Q S+A + + KL T+ K LG + D + + D L+E+
Sbjct: 111 EAKLIVVSLSIQPILSIASRYSLPVNDCAAKLVTYFKKLGADMVIDMTVADDFALLESQR 170
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
EF+ R++ + ESD ++ +PML+S+CPGW+CYAEK GSYILPYIS+ KSPQQ +G+
Sbjct: 171 EFVRRFRAT-ESDGVKN--VMPMLASSCPGWVCYAEKTHGSYILPYISTTKSPQQIMGSL 227
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
IKH + LG R IYHVT+MPCYDKKLEAAREDF +E RD VD V
Sbjct: 228 IKHWVGHNLGGR--SIYHVTLMPCYDKKLEAAREDFF----DKETQSRD-------VDCV 274
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDK---MLTNVDDEGHLYGVAGS-SGGYAETVFRHA 251
+T E+ +++ E LE+S + + + D +L GS SGGYA+ +F++A
Sbjct: 275 ITAIELQQMLEKDGCVLENLEKSQFSQPWLLKQDTDVCPNLTRHLGSGSGGYADHIFKYA 334
Query: 252 AKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
AK LFG +E +LE+ +RN DFREV LE EGK LL+FA+ GF+N+QN+V+K+K K
Sbjct: 335 AKELFGIEVE-NLEYHNLRNPDFREVVLEKEGKVLLRFAIANGFRNIQNLVQKLKRGKSQ 393
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDE 371
Y +VE+MACPSGCLNGG QI+PK G + KEL LE +Y ++ + P +N V+ LY+
Sbjct: 394 YHYVEIMACPSGCLNGGAQIRPKDGTALKELTTELENLY-SSLPVIKPEENKTVKELYEG 452
Query: 372 WLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
WL S+K +HT+YH V K+ A W
Sbjct: 453 WLGGMESDKCTAILHTQYHAVEKTTNALNIKW 484
>gi|332020976|gb|EGI61369.1| Putative cytosolic Fe-S cluster assembly factor [Acromyrmex
echinatior]
Length = 484
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 166/389 (42%), Positives = 243/389 (62%), Gaps = 20/389 (5%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K +I+SLS Q SLA+H+ ++P Q KL + LG ++ D + + D L+EA EF
Sbjct: 113 KYIIVSLSVQPVLSLAQHYELTPEQTLHKLAGYFYQLGADAVLDMTVADDFVLLEAAKEF 172
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ RYK S+E + + LPMLSS+CPGW+CYAEK G++ILPYIS KSPQQ +G+ +K
Sbjct: 173 VERYKASKEG----TKNQLPMLSSSCPGWVCYAEKTHGNFILPYISITKSPQQIMGSLVK 228
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+H+ + + P+ IYHVTVMPCYDKKLEA+REDF +Q+ RD VD V+T
Sbjct: 229 YHLAEVMNLSPEHIYHVTVMPCYDKKLEASREDFY----NQQRKTRD-------VDCVIT 277
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDE--GHLY-GVAGSSGGYAETVFRHAAKT 254
+ E+ ++ + ++E + + + ++E L+ SGGYA+ +FR+AAK
Sbjct: 278 SIELEQMLSEDGLVLNEIDEGEIKQPFGSYNEEIGNKLWGHSGSGSGGYADFIFRYAAKN 337
Query: 255 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
LF + ++FK +RN DF+E L+ + LLKFA+ GF+N+QNIV+K+K KC Y +
Sbjct: 338 LFDE-DNVTVDFKNLRNPDFQEAELKRNNQVLLKFAIINGFRNIQNIVQKMKRGKCVYDY 396
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLE 374
VE+MACP GCLNGG QI+P P+EL TLE +Y + L+ P +N +V++LY WL
Sbjct: 397 VEIMACPCGCLNGGAQIRPDGNVQPRELALTLENMY-HKLPLSKPEENKVVQNLYKTWLG 455
Query: 375 QPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
++K H +T+YH + K+ TA W
Sbjct: 456 GEHTDKVNAHFNTQYHEIQKTNTALAIKW 484
>gi|387017402|gb|AFJ50819.1| Nuclear prelamin A recognition factor-like [Crotalus adamanteus]
Length = 457
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 163/395 (41%), Positives = 246/395 (62%), Gaps = 28/395 (7%)
Query: 4 KQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLG 55
+Q+ +EF +N K K +++S+ PQS A F +S + ++L FLKSLG
Sbjct: 70 QQNPNEFFRVLNLNKKCDTSKHKVLVVSICPQSLPYFAAKFNLSVTEAARRLCGFLKSLG 129
Query: 56 VKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLG 115
V +FDT+ + D +L+E+ EF+ RY+Q + + LPMLSSACPGWI YAE+ L
Sbjct: 130 VHYVFDTTIAADFSLLESQKEFVQRYRQQNQEE-----HVLPMLSSACPGWIQYAERVLP 184
Query: 116 SYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL 175
S ++P+I + KSPQQ +G+ +K++ ++ PD+I+H+ V PCYDKKLEA REDF L
Sbjct: 185 SMVIPHICTAKSPQQIMGSLVKNYFARQQNLSPDKIFHIMVAPCYDKKLEALREDFYTHL 244
Query: 176 DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG 235
+ ++ VD VLT+GEV +++ + ++ + + E D +L + +E L
Sbjct: 245 YNSQD-----------VDCVLTSGEVFQMMEQRKISLKEISEVSFDTLLGGIKEE--LNR 291
Query: 236 VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGF 295
G S GY E +F+HAAK LF ++ L +K ++N DF+EV LE +G+T+L+FA YGF
Sbjct: 292 RDGRSDGYLEHIFKHAAKELFNTEVK-ELTYKILKNKDFQEVTLEKDGETVLRFAAAYGF 350
Query: 296 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM 355
+N+QN++ K+K KC Y FVEV+ACP GCLNG GQ + + G+ K L+K +E +Y V
Sbjct: 351 RNIQNMILKLKRGKCSYHFVEVLACPGGCLNGNGQAQTEDGKPDKALLKQMEDVY-ATVP 409
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
+ P N V+ LY EWLE S KA++ +HT+Y+
Sbjct: 410 VQIPETNGHVQKLYQEWLEGMESSKAQESLHTKYN 444
>gi|307190233|gb|EFN74344.1| Nuclear prelamin A recognition factor-like protein [Camponotus
floridanus]
Length = 482
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 166/391 (42%), Positives = 243/391 (62%), Gaps = 24/391 (6%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K +++SLS Q SLA+H+ ++P Q KL F LG ++ D + + D L+EA EF
Sbjct: 111 KYIVVSLSVQPVLSLAQHYELTPEQTLSKLAGFFYKLGADAVLDMTVADDFVLLEAAKEF 170
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ RYK ++E + LPMLSS+CPGW+CYAEK G++ILPYIS KSPQQ +G+ +K
Sbjct: 171 VERYKANKEG----IKNQLPMLSSSCPGWVCYAEKTHGNFILPYISVTKSPQQIMGSLVK 226
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+H+ + +G P++IYHVTVMPCYDKKLEA+REDF +Q++ RD VD V+T
Sbjct: 227 YHLAENMGLSPEQIYHVTVMPCYDKKLEASREDFY----NQQKGTRD-------VDCVIT 275
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLT--NVDDEGHLY-GVAGSSGGYAETVFRHAAKT 254
+ E+ ++ + ++E + + N ++E L+ SGGYA+ +FR+AAK
Sbjct: 276 SIELEQMLNEDGLVLNEIDEGEIKQPFGSYNKENENRLWGHSGSGSGGYADFIFRYAAKN 335
Query: 255 LFGK--VIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
LF + V+ + FK +RN DF+E L+ + LLKFA+ GF+N+QNIV+KVK KC Y
Sbjct: 336 LFDEENVV---INFKNLRNPDFQEAELKRNDQVLLKFAIINGFRNIQNIVQKVKRSKCVY 392
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
+VE+MACP GCLNGG QI+P+ P+EL LE +Y + + P +N +V++LY W
Sbjct: 393 DYVEIMACPCGCLNGGAQIRPEGNVQPRELASILENVY-HKLPSSRPEENKVVQNLYKTW 451
Query: 373 LEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
L ++K + T+YH + K TA W
Sbjct: 452 LGGEHTDKVSAYFSTQYHEIQKMNTALAIKW 482
>gi|157131925|ref|XP_001655974.1| nitrate, fromate, iron dehydrogenase [Aedes aegypti]
gi|122067377|sp|Q16ML2.1|NARF_AEDAE RecName: Full=Probable cytosolic Fe-S cluster assembly factor
AAEL012261
gi|108871353|gb|EAT35578.1| AAEL012261-PA [Aedes aegypti]
Length = 478
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 158/406 (38%), Positives = 256/406 (63%), Gaps = 25/406 (6%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
++ + +L + + ++ + ++ +++ Q SLA+ + + P + F+++ + K LG +
Sbjct: 95 VMNENNLAKLNNQLDSVRYIVFTVAQQPILSLAKRYNLGPEETFERVAGYFKKLGADMVV 154
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT + DL+LIE+ NEF+ R+ +++S +PM++S+CPGW+CYAEK G++ILP
Sbjct: 155 DTKIADDLSLIESRNEFVERFNTNRQS--------MPMMASSCPGWVCYAEKTHGNFILP 206
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+I++ +SPQQ +G +K ++ + LG D IYHVTVMPCYDKKLEA+REDF +D+
Sbjct: 207 FIATTRSPQQIMGVLVKKYLAKILGVPGDRIYHVTVMPCYDKKLEASREDFFSDVDN--- 263
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF-EALEESPLDKMLTNVDDEGHLYGVAGS 239
RD VD V+T+ E+ ++ + F + +E SP+D ++ S
Sbjct: 264 -CRD-------VDCVITSIEIEQMLDGTGIQFLQTVEPSPIDWPWPTPRPSAFVWAHESS 315
Query: 240 -SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNL 298
SGGY+E +F++AA+ LF I+ EFK +RN+D RE LE+ G+ LL+FA+ GF+N+
Sbjct: 316 GSGGYSEYIFKYAARKLFNINID-QAEFKILRNNDLREAILEINGEVLLRFAIANGFRNI 374
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD 358
QN+V+K+K KC+Y F+E+MACPSGCLNGG Q++P GQ+P+EL LE +Y + + ++
Sbjct: 375 QNMVQKLKRGKCNYHFIEIMACPSGCLNGGAQVRPNSGQTPRELTAELEAMY-KMLPQSN 433
Query: 359 PFKNPLVRSLYDEWLEQPG-SEKAKKHVHTEYHPVVKSITAQLHNW 403
P +N V +Y +L+ G + K K+ +HT YH + K TA W
Sbjct: 434 P-ENEAVEMVYTTFLDNAGDNNKRKEFLHTSYHQIEKMNTALNIKW 478
>gi|242017847|ref|XP_002429397.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212514316|gb|EEB16659.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 473
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 173/387 (44%), Positives = 241/387 (62%), Gaps = 22/387 (5%)
Query: 17 GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V+ISLS Q SL+E + ++P +V L T KSLG + + S + DL L+E+ E
Sbjct: 109 SKIVVISLSIQPILSLSEKYSMNPEKVAGCLVTLFKSLGADKVVEMSLAEDLALMESQFE 168
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ RY+ S +++ +PMLSS+CPGWICYAEK GS+ILPYIS+ KSPQQ IG+ I
Sbjct: 169 FVERYRNS-----DKNLKKMPMLSSSCPGWICYAEKSHGSFILPYISTTKSPQQIIGSLI 223
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K++ LG+ P+++YHVT+MPCYDKKLEA+R +F +SQ L + +VD VL
Sbjct: 224 KYN----LGYSPEQVYHVTLMPCYDKKLEASRNEF---FNSQ--------LNVKDVDCVL 268
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ L+ + + F L+ LD D+ SGGYAE V +AA+ LF
Sbjct: 269 TTIELEQLLSERNILFSTLQPGTLDYPWGQPSDKLLRGHSGSGSGGYAENVITYAAQELF 328
Query: 257 GKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVE 316
G +E +L +K +RN DF EV +E E K +L FA+ GF+N+QNIV+K+K KC Y ++E
Sbjct: 329 GIRLE-NLNWKVVRNPDFTEVTVEHESKQVLNFAIANGFRNIQNIVQKIKRNKCPYHYIE 387
Query: 317 VMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQP 376
+MACPSGCLNGG QI+P KE I LE +Y +N+ + P KN ++ LY +WL+
Sbjct: 388 IMACPSGCLNGGAQIRPDSSIHTKEFINKLENLY-KNLPIVSPEKNLQLQQLYTKWLDGI 446
Query: 377 GSEKAKKHVHTEYHPVVKSITAQLHNW 403
GS+K+ +HT Y V K+ A W
Sbjct: 447 GSDKSVALLHTTYREVEKTQLALNIKW 473
>gi|320164863|gb|EFW41762.1| nuclear prelamin A recognition factor-like protein [Capsaspora
owczarzaki ATCC 30864]
Length = 607
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 173/442 (39%), Positives = 248/442 (56%), Gaps = 68/442 (15%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K V++SLSPQ+RA+LA F +S V +++ L+S G + DT+ SR+ +LIE EF
Sbjct: 178 KLVVVSLSPQARAALAAKFNLSIETVHQRIVAALRSFGAHLVLDTTFSREFSLIETRREF 237
Query: 78 IARYK--QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
I RY+ QSQ + + PML+SACPGW+CYAEK G+++LPYIS+ KSPQQ G+
Sbjct: 238 IDRYRAAQSQSTSKVQVTDIFPMLTSACPGWVCYAEKTHGTFVLPYISAAKSPQQVSGSI 297
Query: 136 IKHHICQKLGFR-------PDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE 188
+K ++ + L + PD IYHV++MPCYDKKLEA+R+DF ++ S
Sbjct: 298 VKDYLPKILRVQADGKPVLPDRIYHVSIMPCYDKKLEASRQDFYSEMYSTR--------- 348
Query: 189 IPEVDSVLTTGEVLDLIQLKAVNF-EALEESP--------LDKMLTNVDDEGHLYGVA-G 238
+VD VLTTGE+ L++ +AV+ + L +P L+ T VD +G + A G
Sbjct: 349 --DVDCVLTTGELEQLLEDRAVDLRQPLTVAPRDIPALSALEAQFTPVDAQGRIVSHAGG 406
Query: 239 SSGGYAETVFRHAAKTLFG-------------------------KVIEG----------- 262
SGGY E RHAA+ LFG +V E
Sbjct: 407 GSGGYLEHTMRHAARELFGIESITIHAASNASTASSSSADAVPMEVAEASLVASSTAGDQ 466
Query: 263 -HLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACP 321
+L ++ ++N DF+E+ LE +G+ LL+FA YGF+N+QN+V+K+K +C Y FVE+MACP
Sbjct: 467 TNLTYRIVKNKDFKELTLERDGQVLLRFAAAYGFKNIQNLVQKIKRNQCQYHFVEIMACP 526
Query: 322 SGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKA 381
SGCLNGGGQIKP G+S K+ + +E YL +P + V + EW
Sbjct: 527 SGCLNGGGQIKPDEGESAKDFLSRVELAYLSQPS-REPGVDASVERIESEWFRDVDEASR 585
Query: 382 KKHVHTEYHPVVKSITAQLHNW 403
+ T+YH V K ++ L W
Sbjct: 586 ANILRTKYHAVEKFVSELLIKW 607
>gi|259511473|sp|B0WU52.2|NARF_CULQU RecName: Full=Probable cytosolic Fe-S cluster assembly factor
CPIJ010948
Length = 478
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 161/406 (39%), Positives = 253/406 (62%), Gaps = 25/406 (6%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
++ + +L + + ++ + ++ +++ Q SLA+ + + + F+++ + + LG +
Sbjct: 95 VMNENNLAKLNNQLDAVRFIVFTVAQQPILSLAKRYNLPAEETFERVAGYFRKLGADLVV 154
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT + DL LIE NEFI R+ ++++ LPML+S+CPG++CYAEK GS+ILP
Sbjct: 155 DTKIADDLALIEGRNEFIERFNTNRQT--------LPMLASSCPGFVCYAEKTHGSFILP 206
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
YI+S +SPQQ +G +K ++ + LG D IYHVTVMPCYDKKLEA+REDF S E
Sbjct: 207 YIASTRSPQQIMGVLVKKYLAKLLGIAADRIYHVTVMPCYDKKLEASREDFF----SDVE 262
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN-FEALEESPLDKMLTNVDDEGHLYGVAGS 239
RD VD V+T+ E+ ++ V + +E++P+D + ++G S
Sbjct: 263 NCRD-------VDCVITSIEIEQMLDGSGVQALQIVEKAPIDWPWSTGRPPVFVWGHESS 315
Query: 240 -SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNL 298
SGGY+E +F++AA+ LF ++ H+EFK +RNSD RE LE G+ +L+FA+ GF+N+
Sbjct: 316 GSGGYSEYLFKYAARKLFNVAVD-HVEFKNLRNSDLREAVLEQNGEVVLRFAIANGFRNI 374
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD 358
QN+V+K+K KC+Y ++E+MACPSGCLNGG QI+P GQS +EL LE +Y ++ ++
Sbjct: 375 QNMVQKLKRGKCNYHYIEIMACPSGCLNGGAQIRPTGGQSQRELTAELEALY-RSLPASN 433
Query: 359 PFKNPLVRSLYDEWLEQPGSEKAKKH-VHTEYHPVVKSITAQLHNW 403
P +N V +Y +L+ G +K +HT YHP+ K TA W
Sbjct: 434 P-ENEAVEMVYTTFLDNAGDNNMRKEFLHTSYHPIEKMNTALNIKW 478
>gi|170049636|ref|XP_001870903.1| nitrate, fromate, iron dehydrogenase [Culex quinquefasciatus]
gi|167871388|gb|EDS34771.1| nitrate, fromate, iron dehydrogenase [Culex quinquefasciatus]
Length = 435
Score = 310 bits (795), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 161/406 (39%), Positives = 253/406 (62%), Gaps = 25/406 (6%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
++ + +L + + ++ + ++ +++ Q SLA+ + + + F+++ + + LG +
Sbjct: 52 VMNENNLAKLNNQLDAVRFIVFTVAQQPILSLAKRYNLPAEETFERVAGYFRKLGADLVV 111
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT + DL LIE NEFI R+ ++++ LPML+S+CPG++CYAEK GS+ILP
Sbjct: 112 DTKIADDLALIEGRNEFIERFNTNRQT--------LPMLASSCPGFVCYAEKTHGSFILP 163
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
YI+S +SPQQ +G +K ++ + LG D IYHVTVMPCYDKKLEA+REDF S E
Sbjct: 164 YIASTRSPQQIMGVLVKKYLAKLLGIAADRIYHVTVMPCYDKKLEASREDFF----SDVE 219
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN-FEALEESPLDKMLTNVDDEGHLYGVAGS 239
RD VD V+T+ E+ ++ V + +E++P+D + ++G S
Sbjct: 220 NCRD-------VDCVITSIEIEQMLDGSGVQALQIVEKAPIDWPWSTGRPPVFVWGHESS 272
Query: 240 -SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNL 298
SGGY+E +F++AA+ LF ++ H+EFK +RNSD RE LE G+ +L+FA+ GF+N+
Sbjct: 273 GSGGYSEYLFKYAARKLFNVAVD-HVEFKNLRNSDLREAVLEQNGEVVLRFAIANGFRNI 331
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD 358
QN+V+K+K KC+Y ++E+MACPSGCLNGG QI+P GQS +EL LE +Y ++ ++
Sbjct: 332 QNMVQKLKRGKCNYHYIEIMACPSGCLNGGAQIRPTGGQSQRELTAELEALY-RSLPASN 390
Query: 359 PFKNPLVRSLYDEWLEQPGSEKAKKH-VHTEYHPVVKSITAQLHNW 403
P +N V +Y +L+ G +K +HT YHP+ K TA W
Sbjct: 391 P-ENEAVEMVYTTFLDNAGDNNMRKEFLHTSYHPIEKMNTALNIKW 435
>gi|221106794|ref|XP_002157697.1| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like [Hydra
magnipapillata]
Length = 462
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 167/398 (41%), Positives = 244/398 (61%), Gaps = 33/398 (8%)
Query: 7 LDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSR 66
L + LS NK K V+IS+SPQS S+A F ++ + K+TTF K +G I+DT+ +R
Sbjct: 97 LADNLSLANK-KIVVISMSPQSLVSIAVKFHVTVSDAYSKITTFFKDIGCDYIYDTNLAR 155
Query: 67 DLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVK 126
++L+E EF+ ++K N ML+SACPGWICYAEK G ++PYIS K
Sbjct: 156 SISLLEMQKEFVEKFK----------NDKKIMLTSACPGWICYAEKTHGELLIPYISQTK 205
Query: 127 SPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEG 186
SPQQ +G+ +K + +KL P+EIYHVT+MPCYDKKLEA+R DF Y D
Sbjct: 206 SPQQIMGSIVKQLLGKKLNKTPNEIYHVTIMPCYDKKLEASRTDF----------YND-I 254
Query: 187 LEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG-VAGSSGGYAE 245
+VD V+T+ EV +++Q K ++F L S +D+ + VD++ L G SGGY E
Sbjct: 255 YNTRDVDLVITSSEVENMLQTKNIDFCGLSLSLIDEDYSFVDEQYQLLSHRGGGSGGYLE 314
Query: 246 TVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKV 305
VF HA+ +LF VI + +K +RN DF+EV LE++G+ L+FA YGF+N+Q+IV+K+
Sbjct: 315 HVFLHASHSLFN-VIPDQIIYKPLRNKDFQEVILEIDGEVKLRFAFAYGFRNIQSIVQKI 373
Query: 306 KMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLV 365
K +KC+Y FVE+MACP GCLNGGGQ++ + K LI+ + + Y + + +P +
Sbjct: 374 KQKKCNYDFVEIMACPLGCLNGGGQVRAETVDDAKSLIQLVTSTY-DLLKPVNPLHDRKT 432
Query: 366 RSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
+ LY++ ++ +HT+YH V K TA W
Sbjct: 433 KELYNQL--------SQSDLHTQYHAVKKMKTALNIQW 462
>gi|444727268|gb|ELW67769.1| Cytosolic Fe-S cluster assembly factor NARFL [Tupaia chinensis]
Length = 639
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 159/364 (43%), Positives = 231/364 (63%), Gaps = 21/364 (5%)
Query: 42 QVFKKLTTFLKS--LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPML 99
Q ++L L++ +G +FDT+ SR+ +L+E+ EF+ R+++ S +LP+L
Sbjct: 295 QSHEELRKVLRANEVGAHFVFDTAFSRNFSLLESQREFVRRFREQAGSPQ-----ALPLL 349
Query: 100 SSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPC 159
+SACPGWICYAEK G + P++S+ +SPQQ +G+ +K Q+ G PD++YHVTVMPC
Sbjct: 350 ASACPGWICYAEKTHGPLLTPHLSTARSPQQVMGSLVKDFFAQQQGLAPDKVYHVTVMPC 409
Query: 160 YDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP 219
YDKKLEA+R DF + E RD VD VLTTGEV L++ + V+ LE +P
Sbjct: 410 YDKKLEASRPDFF----NHEYQTRD-------VDCVLTTGEVYKLLEEQGVSLPDLEPAP 458
Query: 220 LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL 279
LD + ++V E G SGGY E VFRHAA+ LFG ++ L ++ +RN DF+EV L
Sbjct: 459 LDSLPSSVSAEEPTSHRGGGSGGYLEHVFRHAARELFGIHVD-ELTYRPLRNKDFQEVTL 517
Query: 280 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP 339
E EG+ LL FA YGF+N+QN+V+K++ +C Y +VEVMACP+GCLNGGGQ++ S
Sbjct: 518 EREGQVLLHFAAAYGFRNIQNLVQKLRRGRCPYHYVEVMACPAGCLNGGGQLRAADMPS- 576
Query: 340 KELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 399
+EL++ +E +Y +V + P P V LY WL+ S +A + +HT+YH V K+ +
Sbjct: 577 RELLQQVEKLY-ASVRVEAPEDTPGVPELYRHWLQGEDSARASRLLHTQYHAVEKADSGL 635
Query: 400 LHNW 403
W
Sbjct: 636 SIRW 639
>gi|322797338|gb|EFZ19450.1| hypothetical protein SINV_01960 [Solenopsis invicta]
Length = 484
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 164/389 (42%), Positives = 242/389 (62%), Gaps = 20/389 (5%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K +I+SLS Q SLA+ + ++P Q KL F LG ++ D + + D L+EA EF
Sbjct: 113 KYIIVSLSVQPVLSLAQRYELTPEQALSKLAGFFYRLGADAVLDMTMADDFVLLEAAKEF 172
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ RYK S+E + LPMLSS+CPGW+CYAEK G++ILP+IS KSPQQ +G+ +K
Sbjct: 173 VERYKASKEG----MKNQLPMLSSSCPGWVCYAEKTHGNFILPHISVTKSPQQIMGSLVK 228
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+H+ + +G P++IYHVTVMPCYDKKLEA+REDF +Q+ RD VD V+T
Sbjct: 229 YHLAEIIGLSPEQIYHVTVMPCYDKKLEASREDFY----NQQRKMRD-------VDCVIT 277
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDE--GHLY-GVAGSSGGYAETVFRHAAKT 254
+ E+ ++ + ++E + + + +E L+ SGGYA+ +FR+AAK
Sbjct: 278 SIELEQMLNEDGLILNEIDEGEIKQPFGSYSEEIGTKLWGHSGSGSGGYADFIFRYAAKN 337
Query: 255 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
LF + ++FK++RN DF+E L+ + LLKFA+ GF+N+QNIV+K+K KC Y +
Sbjct: 338 LFDED-NVTVDFKSLRNLDFQEAELKRNDQVLLKFAIINGFRNIQNIVQKMKKGKCVYDY 396
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLE 374
VE+MACP GCLNGG Q++P +EL TLET+Y + L+ P +N +V++LY WL
Sbjct: 397 VEIMACPCGCLNGGAQVRPDGNIQARELASTLETMY-RKLPLSKPEENTVVQNLYKTWLG 455
Query: 375 QPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
++K + +T+YH + K TA W
Sbjct: 456 GEHTDKVNAYFNTQYHEIQKMNTALAIKW 484
>gi|196015869|ref|XP_002117790.1| hypothetical protein TRIADDRAFT_61804 [Trichoplax adhaerens]
gi|190579675|gb|EDV19766.1| hypothetical protein TRIADDRAFT_61804 [Trichoplax adhaerens]
Length = 447
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 174/417 (41%), Positives = 243/417 (58%), Gaps = 49/417 (11%)
Query: 1 MLEKQSLDEFLSNINKG------------KAVIISLSPQSRASLAEHFGISPLQVFKKLT 48
++ KQS +EF + ++K K +I+S+SPQSRA+LA ++ + Q+ K L
Sbjct: 66 LISKQSKEEFYAILDKNQRLQETHQESRMKTIIVSISPQSRAALAVNYNLDINQIGKMLA 125
Query: 49 -TFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWI 107
TF K LG +FD + +RD +LIE+ EFI RY S S LP+ +SACPGWI
Sbjct: 126 ATFKKVLGASYVFDATFARDFSLIESQREFIDRYCSS-------SPCKLPVFASACPGWI 178
Query: 108 CYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAA 167
CYAEK G +ILPY+S+VKSPQQ +G+ IK + ++G RP +IYHVTVMPCYDKKLEA+
Sbjct: 179 CYAEKIHGKFILPYLSAVKSPQQIMGSLIKDYFANQIGKRPSDIYHVTVMPCYDKKLEAS 238
Query: 168 REDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNV 227
R DF +E L +VD VLT+GEV+++ + LD+ +V
Sbjct: 239 RNDFY-----------NESLNAADVDCVLTSGEVMEIFNERGCVVVNGTSENLDRPFVSV 287
Query: 228 DDEGH-LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTL 286
D+ L G SGGY E VF+ AA +F I+ + +KT+RN DFREV L ++GK++
Sbjct: 288 DENNEVLTHDGGGSGGYLENVFKTAAAEIFQLKIQNMI-YKTVRNKDFREVILTIDGKSV 346
Query: 287 LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL 346
LK A+ YGF+N+QNIV+++K KC Y +VE+MACP GCLNGGGQ K + + + L
Sbjct: 347 LKGAIVYGFRNIQNIVQRMKRGKCLYDYVEIMACPGGCLNGGGQPKIDLDSNLRLHLMKL 406
Query: 347 ETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
E Y + EWL+ S KA+K ++T Y+ +S A W
Sbjct: 407 EKCY----------------NSAGEWLDGSDSYKARKMLYTTYYDKSQSQNAISVKW 447
>gi|145344368|ref|XP_001416706.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576932|gb|ABO94999.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 473
Score = 306 bits (785), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 170/417 (40%), Positives = 243/417 (58%), Gaps = 41/417 (9%)
Query: 1 MLEKQSLDEFLSNINKGKA-----VIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-L 54
+LE+QS+DEF + ++ V+ S+SPQS SL+E +G+ + +L LK+
Sbjct: 84 LLEQQSVDEFAQACARARSDGTSVVVASVSPQSLMSLSEAYGLGVEETRARLGGLLKAGF 143
Query: 55 GVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQL 114
G FDTS SRD+ L+E EF ++ R + PML+SACPGW+CYAEK
Sbjct: 144 GAARAFDTSFSRDIALVETFAEF---------TEWMRDGARTPMLASACPGWVCYAEKTH 194
Query: 115 GSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQ 174
G +P++++ KSPQQ +G +K + ++LG +YHV+VMPCYDKKLEA R+DF
Sbjct: 195 GELAVPHMATTKSPQQIMGRFVKSAVARELGVPAHNVYHVSVMPCYDKKLEATRDDF--- 251
Query: 175 LDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP---LDKMLTNVDDEG 231
E + +VD VLTTGEV L L+ L ++P D ++ +
Sbjct: 252 ----------ESDGVKDVDVVLTTGEVALL--LEKAGLCHLRDAPANDFDAFVSTNEQAP 299
Query: 232 HLYGVA---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLK 288
A SGGYAE VFR AA LF I G +++ +RN+D RE L + G+ +L+
Sbjct: 300 ESVCAAPAVSGSGGYAEYVFRRAAAELFNAPITGEIDWVKMRNADMREATLTINGEAVLR 359
Query: 289 FALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLET 348
A+ YGF+N+QN+VR +K++K + FVE+MACPSGCLNGGGQI + G + KELI L+
Sbjct: 360 VAVAYGFRNIQNLVRSIKLKKSKHHFVEIMACPSGCLNGGGQIPAREGTANKELIDRLDD 419
Query: 349 IYLENVMLADPFKNPLVRSLYDEWL-EQPGSEKAKKHVHTEYHPVVKSI-TAQLHNW 403
Y EN A P + V +LY EW+ PGS A++ + T+YH KS+ QL++W
Sbjct: 420 TYRENAR-ARPMAD--VSTLYREWIGGNPGSSNAREALRTQYHIRAKSVGVVQLNSW 473
>gi|242032965|ref|XP_002463877.1| hypothetical protein SORBIDRAFT_01g008100 [Sorghum bicolor]
gi|241917731|gb|EER90875.1| hypothetical protein SORBIDRAFT_01g008100 [Sorghum bicolor]
Length = 274
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 161/283 (56%), Positives = 196/283 (69%), Gaps = 45/283 (15%)
Query: 157 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 216
MPCYDKKLEA R+DF F +D G E+ EVDSVLTTGEVLDLIQ+ + F L
Sbjct: 1 MPCYDKKLEAVRDDFTFSVD---------GKEVTEVDSVLTTGEVLDLIQVASWFFFLLV 51
Query: 217 ESPLD------------------------------------KMLTNVDDEGHLYGVAGSS 240
+D LTNVD+EGHLYGV+G S
Sbjct: 52 LWFMDLKNKGGTYYDLHISAVQIYRFQDIRGIFIGQIVRPCAWLTNVDEEGHLYGVSGGS 111
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
GGYAE VFR+AA ++ + IEG L+F+ +RNSDFRE+ LEVEGK +LKFALCYGF+NLQN
Sbjct: 112 GGYAEMVFRYAAHVIYKREIEGPLDFRILRNSDFREITLEVEGKPVLKFALCYGFRNLQN 171
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
IVRK+KM KC+Y F+EVMACPSGCLNGGGQ+KP GQS KELI+ LE++Y +++ + DPF
Sbjct: 172 IVRKIKMGKCEYHFIEVMACPSGCLNGGGQLKPVQGQSSKELIQQLESVYTQDISILDPF 231
Query: 361 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
NP+ + LYDEWL QPGSE AKK++HTEYHPVVKS+ +QL NW
Sbjct: 232 SNPIAKKLYDEWLGQPGSENAKKYLHTEYHPVVKSVASQLQNW 274
>gi|195476070|ref|XP_002085972.1| GE22682 [Drosophila yakuba]
gi|259511295|sp|B4ISL0.1|NARF_DROYA RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GE22682
gi|194185754|gb|EDW99365.1| GE22682 [Drosophila yakuba]
Length = 477
Score = 304 bits (779), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 165/406 (40%), Positives = 245/406 (60%), Gaps = 25/406 (6%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
+L++ S + + + + ++ S++ Q SLA + I + L + +SLG +
Sbjct: 94 VLQENSKKKATEDWDNVRTIVFSVATQPLLSLAHRYQIGVEDAARHLAGYFRSLGGNYVL 153
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
T + D+ L+E EF+ RY R N +L MLSS+CPGW+CYAEK G++ILP
Sbjct: 154 STKVADDIALLECRQEFVERY---------RENENLTMLSSSCPGWVCYAEKTHGNFILP 204
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
Y+S+ +SPQQ +G +KH + +KL IYHVTVMPCYDKKLEA+R+DF S+
Sbjct: 205 YVSTTRSPQQIMGVLVKHILAEKLNIPASRIYHVTVMPCYDKKLEASRDDFF----SKTN 260
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS- 239
RD VD V+T+ EV L+ + LD +NV + ++ +
Sbjct: 261 NSRD-------VDCVITSVEVEQLLGEAQRTLSQFDPLDLDWPWSNVRPDLMVWAHEKTL 313
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQ 299
SGGYAE VF+ AAK +F +V LEFK ++N DFRE+ L+ G T+LKFA+ GF+N+Q
Sbjct: 314 SGGYAEHVFKFAAKQIFNEVPTNELEFKQLKNRDFREIILKKNGNTVLKFAIANGFRNIQ 373
Query: 300 NIVRKVKMRKC-DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD 358
N+V+K+K K +Y FVEVMACPSGC+NGG QI+P GQ +EL + LE +Y N+ L++
Sbjct: 374 NMVQKLKRGKVSNYHFVEVMACPSGCINGGAQIRPTTGQHVRELTRKLEELY-HNLPLSE 432
Query: 359 PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLH-NW 403
P +N L + +Y ++L+ +EK+ + +HT YH VV ++ L+ NW
Sbjct: 433 P-ENSLTKHIYKDFLDGFQTEKSYELLHTSYHDVVSELSISLNINW 477
>gi|259511475|sp|B4NSS7.2|NARF_DROSI RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GD17698
Length = 477
Score = 303 bits (777), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 164/406 (40%), Positives = 246/406 (60%), Gaps = 25/406 (6%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
+L++ S ++ + + + ++I+L+ Q SLA + I + L + +SLG +
Sbjct: 94 VLQENSKNKASEDWDNVRTIVITLATQPILSLAHRYQIGVEDAARHLNGYFRSLGADYVL 153
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
T + D+ L+E EF+ RY R N +L MLSS+CPGW+CYAEK G++ILP
Sbjct: 154 STKVADDIALLECRQEFVDRY---------RENENLTMLSSSCPGWVCYAEKTHGNFILP 204
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
Y+S+ +SPQQ +G +K + K+ IYHVTVMPCYDKKLEA+REDF S+
Sbjct: 205 YVSTTRSPQQIMGVLVKQILADKINVPASRIYHVTVMPCYDKKLEASREDFF----SKAN 260
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS- 239
RD VD V+T+ EV L+ + LD +NV E ++ +
Sbjct: 261 NSRD-------VDCVITSVEVEQLLSEAQRPLSQYDLFDLDWPWSNVRPEFMVWAHEKTL 313
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQ 299
SGGYAE +F+ AAK +F + + LEFK +RN DFRE+ L+ GKT+LKFA+ GF+N+Q
Sbjct: 314 SGGYAEHIFKFAAKHIFNEDLTTELEFKQLRNRDFREIILKQNGKTVLKFAIANGFRNIQ 373
Query: 300 NIVRKVKMRK-CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD 358
N+V+K+K K +Y FVEVMACPSGC+NGG QI+P GQ +EL + LE +Y N+ ++
Sbjct: 374 NLVQKLKREKLSNYHFVEVMACPSGCINGGAQIRPTTGQHVRELTRKLEELY-HNLPRSE 432
Query: 359 PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLH-NW 403
P +N L + +Y+++L+ ++K+ + +HT YH VV ++ L+ NW
Sbjct: 433 P-ENSLTKHIYNDFLDGFQTDKSYEVLHTRYHDVVSDLSISLNINW 477
>gi|195357063|ref|XP_002044933.1| GM20417 [Drosophila sechellia]
gi|194124275|gb|EDW46318.1| GM20417 [Drosophila sechellia]
Length = 478
Score = 303 bits (776), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 163/406 (40%), Positives = 246/406 (60%), Gaps = 25/406 (6%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
+L++ S ++ + + + ++I+L+ Q SLA + I + L + +SLG +
Sbjct: 95 ILQENSKNKASEDWDNVRTIVITLATQPLLSLAHRYQIGVEDAARHLNGYFRSLGADYVL 154
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
T + D+ L+E EF+ RY R N +L MLSS+CPGW+CYAEK G++ILP
Sbjct: 155 STKVADDIALLECRQEFVDRY---------RENENLTMLSSSCPGWVCYAEKTHGNFILP 205
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
Y+S+ +SPQQ +G +K + K+ IYHVTVMPCYDKKLEA+REDF S+
Sbjct: 206 YVSTTRSPQQIMGVLVKQILADKINVPASRIYHVTVMPCYDKKLEASREDFF----SKAN 261
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS- 239
RD VD V+T+ EV L+ + LD +NV E ++ +
Sbjct: 262 NSRD-------VDCVITSVEVEQLLSEAQRPLSQYDLFDLDWPWSNVRPEFMVWAHEKTQ 314
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQ 299
SGGYAE +F+ AAK +F + + LEFK ++N DFRE+ L+ GKT+LKFA+ GF+N+Q
Sbjct: 315 SGGYAEHIFKFAAKHIFNEDLTTELEFKQLKNRDFREIILKQNGKTVLKFAIANGFRNIQ 374
Query: 300 NIVRKVKMRK-CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD 358
N+V+K+K K +Y FVEVMACPSGC+NGG QI+P GQ +EL + LE +Y N+ ++
Sbjct: 375 NLVQKLKREKLSNYHFVEVMACPSGCINGGAQIRPTTGQHVRELTRKLEELY-HNLPRSE 433
Query: 359 PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLH-NW 403
P +N L + +Y+++L+ ++K+ + +HT YH VV ++ L+ NW
Sbjct: 434 P-ENSLTKHIYNDFLDGFQTDKSYEMLHTRYHDVVSDLSISLNINW 478
>gi|194877439|ref|XP_001973881.1| GG21400 [Drosophila erecta]
gi|259511278|sp|B3NKH7.1|NARF_DROER RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GG21400
gi|190657068|gb|EDV54281.1| GG21400 [Drosophila erecta]
Length = 477
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 164/389 (42%), Positives = 234/389 (60%), Gaps = 25/389 (6%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ ++ +++ Q SLA + I + L + +SLG + T + D+ L+E EF
Sbjct: 111 RTIVFTIATQPLLSLAHRYQIGVEDSARHLAGYFRSLGADYVLSTKVADDIALLECRQEF 170
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ RY R N +L MLSS+CPGW+CYAEK G++ILPYIS+ +SPQQ +G +K
Sbjct: 171 VERY---------RENENLTMLSSSCPGWVCYAEKTHGNFILPYISTTRSPQQIMGVLVK 221
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
H +KL +IYHVTVMPCYDKKLEA+REDF S RD VD V+T
Sbjct: 222 HVFAEKLNVPASQIYHVTVMPCYDKKLEASREDFF----STANNSRD-------VDCVIT 270
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLF 256
+ EV L+ + LD +NV + ++ + SGGYAE +F+ AAK LF
Sbjct: 271 SVEVEQLLSESQRTLAQYDPVDLDWPWSNVPPDFMVWAHEKTLSGGYAEHIFKFAAKELF 330
Query: 257 GKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-DYQFV 315
+V LEFK ++N DFRE+ L+ G T+LKFA+ GF+N+QN+V K+K K +Y FV
Sbjct: 331 NEVPRSELEFKQLKNRDFREIILKKNGNTVLKFAIANGFRNIQNLVHKLKRGKVSNYHFV 390
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQ 375
EVMACPSGC+NGG QI+P GQ +EL + LE +Y N+ +DP +N L + +Y ++L+
Sbjct: 391 EVMACPSGCINGGAQIRPTTGQHVRELTRKLEELY-HNLPQSDP-ENSLTKLIYTDFLDG 448
Query: 376 PGSEKAKKHVHTEYHPVVKSITAQLH-NW 403
+EK+ + +HT YH VV ++ L+ NW
Sbjct: 449 FQTEKSYELLHTRYHDVVSELSKSLNINW 477
>gi|259511474|sp|B4IMH3.2|NARF_DROSE RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GM20417
Length = 477
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 163/406 (40%), Positives = 246/406 (60%), Gaps = 25/406 (6%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
+L++ S ++ + + + ++I+L+ Q SLA + I + L + +SLG +
Sbjct: 94 ILQENSKNKASEDWDNVRTIVITLATQPLLSLAHRYQIGVEDAARHLNGYFRSLGADYVL 153
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
T + D+ L+E EF+ RY R N +L MLSS+CPGW+CYAEK G++ILP
Sbjct: 154 STKVADDIALLECRQEFVDRY---------RENENLTMLSSSCPGWVCYAEKTHGNFILP 204
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
Y+S+ +SPQQ +G +K + K+ IYHVTVMPCYDKKLEA+REDF S+
Sbjct: 205 YVSTTRSPQQIMGVLVKQILADKINVPASRIYHVTVMPCYDKKLEASREDFF----SKAN 260
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS- 239
RD VD V+T+ EV L+ + LD +NV E ++ +
Sbjct: 261 NSRD-------VDCVITSVEVEQLLSEAQRPLSQYDLFDLDWPWSNVRPEFMVWAHEKTQ 313
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQ 299
SGGYAE +F+ AAK +F + + LEFK ++N DFRE+ L+ GKT+LKFA+ GF+N+Q
Sbjct: 314 SGGYAEHIFKFAAKHIFNEDLTTELEFKQLKNRDFREIILKQNGKTVLKFAIANGFRNIQ 373
Query: 300 NIVRKVKMRK-CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD 358
N+V+K+K K +Y FVEVMACPSGC+NGG QI+P GQ +EL + LE +Y N+ ++
Sbjct: 374 NLVQKLKREKLSNYHFVEVMACPSGCINGGAQIRPTTGQHVRELTRKLEELY-HNLPRSE 432
Query: 359 PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLH-NW 403
P +N L + +Y+++L+ ++K+ + +HT YH VV ++ L+ NW
Sbjct: 433 P-ENSLTKHIYNDFLDGFQTDKSYEMLHTRYHDVVSDLSISLNINW 477
>gi|116007466|ref|NP_001036429.1| CG17683, isoform D [Drosophila melanogaster]
gi|51951087|gb|EAL24589.1| CG17683, isoform D [Drosophila melanogaster]
gi|294661893|gb|ADF28787.1| RE20880p [Drosophila melanogaster]
Length = 430
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 162/406 (39%), Positives = 247/406 (60%), Gaps = 25/406 (6%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
+L++ S ++ + + + ++ +L+ Q SLA + I + L + +SLG +
Sbjct: 47 VLQENSKNKASEDWDNVRTIVFTLATQPILSLAYRYQIGVEDAARHLNGYFRSLGADYVL 106
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
T + D+ L+E EF+ RY R N +L MLSS+CPGW+CYAEK G+++LP
Sbjct: 107 STKVADDIALLECRQEFVDRY---------RENENLTMLSSSCPGWVCYAEKTHGNFLLP 157
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
Y+S+ +SPQQ +G +K + K+ IYHVTVMPCYDKKLEA+REDF S+
Sbjct: 158 YVSTTRSPQQIMGVLVKQILADKMNVPASRIYHVTVMPCYDKKLEASREDFF----SKAN 213
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS- 239
RD VD V+T+ EV L+ + LD +NV E ++ +
Sbjct: 214 NSRD-------VDCVITSVEVEQLLSEAQQPLSQYDLLDLDWPWSNVRPEFMVWAHEKTL 266
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQ 299
SGGYAE +F++AAK +F + ++ LEFK ++N DFRE+ L+ GKT+LKFA+ GF+N+Q
Sbjct: 267 SGGYAEHIFKYAAKHIFNEDLKTELEFKQLKNRDFREIILKQNGKTVLKFAIANGFRNIQ 326
Query: 300 NIVRKVKMRKC-DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD 358
N+V+K+K K +Y FVEVMACPSGC+NGG QI+P GQ +EL + LE +Y +N+ ++
Sbjct: 327 NLVQKLKREKVSNYHFVEVMACPSGCINGGAQIRPTTGQHVRELTRKLEELY-QNLPRSE 385
Query: 359 PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLH-NW 403
P +N L + +Y+++L+ S+K+ +HT YH VV ++ L+ NW
Sbjct: 386 P-ENSLTKHIYNDFLDGFQSDKSYDVLHTRYHDVVSELSISLNINW 430
>gi|116007468|ref|NP_001036430.1| CG17683, isoform C [Drosophila melanogaster]
gi|51951088|gb|EAL24590.1| CG17683, isoform C [Drosophila melanogaster]
gi|323301260|gb|ADX35972.1| RE10877p [Drosophila melanogaster]
Length = 473
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 162/406 (39%), Positives = 247/406 (60%), Gaps = 25/406 (6%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
+L++ S ++ + + + ++ +L+ Q SLA + I + L + +SLG +
Sbjct: 90 VLQENSKNKASEDWDNVRTIVFTLATQPILSLAYRYQIGVEDAARHLNGYFRSLGADYVL 149
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
T + D+ L+E EF+ RY R N +L MLSS+CPGW+CYAEK G+++LP
Sbjct: 150 STKVADDIALLECRQEFVDRY---------RENENLTMLSSSCPGWVCYAEKTHGNFLLP 200
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
Y+S+ +SPQQ +G +K + K+ IYHVTVMPCYDKKLEA+REDF S+
Sbjct: 201 YVSTTRSPQQIMGVLVKQILADKMNVPASRIYHVTVMPCYDKKLEASREDFF----SKAN 256
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS- 239
RD VD V+T+ EV L+ + LD +NV E ++ +
Sbjct: 257 NSRD-------VDCVITSVEVEQLLSEAQQPLSQYDLLDLDWPWSNVRPEFMVWAHEKTL 309
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQ 299
SGGYAE +F++AAK +F + ++ LEFK ++N DFRE+ L+ GKT+LKFA+ GF+N+Q
Sbjct: 310 SGGYAEHIFKYAAKHIFNEDLKTELEFKQLKNRDFREIILKQNGKTVLKFAIANGFRNIQ 369
Query: 300 NIVRKVKMRKC-DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD 358
N+V+K+K K +Y FVEVMACPSGC+NGG QI+P GQ +EL + LE +Y +N+ ++
Sbjct: 370 NLVQKLKREKVSNYHFVEVMACPSGCINGGAQIRPTTGQHVRELTRKLEELY-QNLPRSE 428
Query: 359 PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLH-NW 403
P +N L + +Y+++L+ S+K+ +HT YH VV ++ L+ NW
Sbjct: 429 P-ENSLTKHIYNDFLDGFQSDKSYDVLHTRYHDVVSELSISLNINW 473
>gi|116007464|ref|NP_001036428.1| CG17683, isoform A [Drosophila melanogaster]
gi|74866134|sp|Q8SYS7.1|NARF_DROME RecName: Full=Probable cytosolic Fe-S cluster assembly factor
CG17683
gi|17945827|gb|AAL48960.1| RE37350p [Drosophila melanogaster]
gi|30923684|gb|EAA46161.1| CG17683, isoform A [Drosophila melanogaster]
gi|220948432|gb|ACL86759.1| CG17683-PA [synthetic construct]
gi|220957562|gb|ACL91324.1| CG17683-PA [synthetic construct]
Length = 477
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 162/406 (39%), Positives = 247/406 (60%), Gaps = 25/406 (6%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
+L++ S ++ + + + ++ +L+ Q SLA + I + L + +SLG +
Sbjct: 94 VLQENSKNKASEDWDNVRTIVFTLATQPILSLAYRYQIGVEDAARHLNGYFRSLGADYVL 153
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
T + D+ L+E EF+ RY R N +L MLSS+CPGW+CYAEK G+++LP
Sbjct: 154 STKVADDIALLECRQEFVDRY---------RENENLTMLSSSCPGWVCYAEKTHGNFLLP 204
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
Y+S+ +SPQQ +G +K + K+ IYHVTVMPCYDKKLEA+REDF S+
Sbjct: 205 YVSTTRSPQQIMGVLVKQILADKMNVPASRIYHVTVMPCYDKKLEASREDFF----SKAN 260
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS- 239
RD VD V+T+ EV L+ + LD +NV E ++ +
Sbjct: 261 NSRD-------VDCVITSVEVEQLLSEAQQPLSQYDLLDLDWPWSNVRPEFMVWAHEKTL 313
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQ 299
SGGYAE +F++AAK +F + ++ LEFK ++N DFRE+ L+ GKT+LKFA+ GF+N+Q
Sbjct: 314 SGGYAEHIFKYAAKHIFNEDLKTELEFKQLKNRDFREIILKQNGKTVLKFAIANGFRNIQ 373
Query: 300 NIVRKVKMRKC-DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD 358
N+V+K+K K +Y FVEVMACPSGC+NGG QI+P GQ +EL + LE +Y +N+ ++
Sbjct: 374 NLVQKLKREKVSNYHFVEVMACPSGCINGGAQIRPTTGQHVRELTRKLEELY-QNLPRSE 432
Query: 359 PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLH-NW 403
P +N L + +Y+++L+ S+K+ +HT YH VV ++ L+ NW
Sbjct: 433 P-ENSLTKHIYNDFLDGFQSDKSYDVLHTRYHDVVSELSISLNINW 477
>gi|328793099|ref|XP_003251826.1| PREDICTED: probable cytosolic Fe-S cluster assembly factor
AGAP009023-like [Apis mellifera]
Length = 483
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 159/391 (40%), Positives = 236/391 (60%), Gaps = 27/391 (6%)
Query: 20 VIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
+++SLS Q+ S+AEH+ ++ Q KL + LG + D + + D L+E+ EFI
Sbjct: 113 IVVSLSVQAVLSIAEHYNLNSEQALNKLAGYFYQLGADIVLDMTVADDFALLESAKEFIQ 172
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
RY+ ++ + + LPMLSS+CPGW+CYAEK G++ILPYIS KSPQQ +G+ +K+H
Sbjct: 173 RYRANKNG----AKNQLPMLSSSCPGWVCYAEKTHGNFILPYISVTKSPQQIMGSLVKYH 228
Query: 140 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
+ + + P +IYH+TVMPCYDKKLEA+REDF D ++ +VD V+T
Sbjct: 229 LAKIMDLSPKQIYHITVMPCYDKKLEASREDFY-----------DHEIKSRDVDCVITPI 277
Query: 200 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLY-------GVAGSSGGYAETVFRHAA 252
E+ + V L E ++K + + + Y SGGYAE + R+AA
Sbjct: 278 EIEQMFNEYNV---ILSEIKIEKKIQRIFESKMKYLKNDLYGHSGSGSGGYAEFILRYAA 334
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LF + + +EFK++RN DF+E + +G+ LL FA+ GF+N+QN+V+K+K KC Y
Sbjct: 335 KYLFNET-DIIIEFKSLRNPDFQEAVFQKDGQILLTFAIANGFRNIQNLVQKLKRGKCLY 393
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
+VE+MACP GCLNGG QI+P +EL LE+IY E + +DP +N +V++LY W
Sbjct: 394 DYVEIMACPCGCLNGGAQIRPLNNVQSRELALKLESIYRE-LPQSDPEQNLIVKNLYKNW 452
Query: 373 LEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
L ++KA + HT+YH + K TA W
Sbjct: 453 LGGEYTDKALAYFHTQYHEIKKVNTALAIKW 483
>gi|380011549|ref|XP_003689864.1| PREDICTED: probable cytosolic Fe-S cluster assembly factor
AGAP009023-like [Apis florea]
Length = 486
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 162/390 (41%), Positives = 238/390 (61%), Gaps = 25/390 (6%)
Query: 20 VIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
+++SLS Q+ S+AEH+ ++ Q KL + LG + D + + D L+E+ EFI
Sbjct: 116 IVVSLSVQAVLSIAEHYNLNSEQALNKLAGYFYQLGADIVLDMTVADDFALLESAKEFIQ 175
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
RY+ ++ + LPMLSS+CPGW+CYAEK G++ILPYIS KSPQQ +G+ +K+H
Sbjct: 176 RYRANKNG----VKNQLPMLSSSCPGWVCYAEKTHGNFILPYISVTKSPQQIMGSLVKYH 231
Query: 140 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
+ + + P++IYH+TVMPCYDKKLEA+REDF + E RD VD V+T
Sbjct: 232 LAETMNLSPEQIYHITVMPCYDKKLEASREDFY----NHEIKSRD-------VDCVITPI 280
Query: 200 EVLDLIQ-----LKAVNFEALEESPLDKMLTNVDDEGHLY-GVAGSSGGYAETVFRHAAK 253
E+ + L +N E + + + + ++ LY SGGYAE + R+AAK
Sbjct: 281 EIEQMFNEYNVILSEINNEKKIQRIFESKMKYLKND--LYGHSGSGSGGYAEFILRYAAK 338
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
LF + + +EFK +RN DF+E + +G+TLL FA+ GF+N+QN+V+K+K KC Y
Sbjct: 339 YLFNET-DIIIEFKNLRNPDFQEAIFQKDGQTLLTFAIANGFRNIQNLVQKLKRGKCLYD 397
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWL 373
+VEVMACP GCLNGG QI+P +EL LE+IY E + ++P +N +V++LY WL
Sbjct: 398 YVEVMACPCGCLNGGAQIRPLNNVQSRELALKLESIYRE-LPQSNPEQNLIVKNLYKNWL 456
Query: 374 EQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
++KA + HT+YH + K TA W
Sbjct: 457 GGEYTDKALAYFHTQYHEIKKVDTALAIKW 486
>gi|289740813|gb|ADD19154.1| nitrate iron dehydrogenase [Glossina morsitans morsitans]
Length = 479
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 167/409 (40%), Positives = 250/409 (61%), Gaps = 34/409 (8%)
Query: 3 EKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDT 62
E QSL ++ + V+ ++S Q SLA+ +G++ K L+ +L+ LG I +T
Sbjct: 97 ENQSLKSNEKFSDEARVVVFTISQQPVLSLAQRYGLTVENTIKHLSGYLRHLGADIILNT 156
Query: 63 SCSRDLTLIEACNEFIARYK-QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPY 121
+ DL L+E EFI R++ +SQE LPML+S+CPGW+CYAEK G++ILPY
Sbjct: 157 KIADDLALLECRREFIDRFRSKSQEQ-------PLPMLTSSCPGWVCYAEKTHGNFILPY 209
Query: 122 ISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEET 181
+S+ +SPQQ +G +K + +KL + ++IYHVT+MPCYDKKLEA+R DF ++++ ++
Sbjct: 210 LSTTRSPQQIMGILVKQWLAKKLKVKSEQIYHVTIMPCYDKKLEASRHDFFSEVENSKD- 268
Query: 182 YRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDD------EGHLYG 235
VD V+T+ E+ ++ + E+LE+ P K D ++G
Sbjct: 269 ----------VDCVITSIEIEQML-----SSESLEKYPASKFDDVFDVVDDNGPSDTIWG 313
Query: 236 VAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYG 294
S SGGY+E +F+++AK LF + LE+K +RN DFREV LE +GK LLKFA+ G
Sbjct: 314 YESSTSGGYSEHIFKYSAKHLFDMDV-ATLEYKNLRNPDFREVVLEKDGKCLLKFAIANG 372
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV 354
F+N+QN+V+K+K K Y FVEVMACPSGC+NGG QI+P GQ+ +EL LE +Y + +
Sbjct: 373 FRNIQNLVQKLKRGKTQYHFVEVMACPSGCINGGAQIRPVSGQTVRELTSQLEHLYRQ-L 431
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
++P N S+Y+ + + +EK+K +HT YH V K TA W
Sbjct: 432 PQSNP-NNLTCESMYNNFFDGFHTEKSKMFLHTTYHAVEKLNTALNIKW 479
>gi|383849491|ref|XP_003700378.1| PREDICTED: probable cytosolic Fe-S cluster assembly factor
AAEL012261-like [Megachile rotundata]
Length = 485
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 162/390 (41%), Positives = 235/390 (60%), Gaps = 20/390 (5%)
Query: 17 GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K +++SLS Q+ S+A+ + ++P Q KL + LG + D + + D L+E+ E
Sbjct: 113 SKFIVVSLSVQAVLSIAKRYDLNPEQALNKLAGYFYQLGADIVVDMTIADDFALLESAKE 172
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ RYK ++ + + LPMLSS+CPGW+CYAEK G++ILPYIS KSPQQ +G+ +
Sbjct: 173 FVERYKAAKGG----ATNQLPMLSSSCPGWVCYAEKTHGNFILPYISVTKSPQQIMGSLV 228
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K+H+ + G P++IYHVT+MPCYDKKLEA+REDF + E RD VD V+
Sbjct: 229 KYHLAETKGLSPEQIYHVTLMPCYDKKLEASREDFY----NAERNSRD-------VDCVI 277
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDK---MLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
T E+ ++ V + E + K + T + SGGYA+ +FR+AAK
Sbjct: 278 TPIELEQMLNEYNVTLSEVNEKEVQKPFGVQTENLETNLCSHSGSGSGGYADFIFRYAAK 337
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
LF + + +EFK +RN DF+E + LLKFA+ GF+N+QN+V+K+K KC Y
Sbjct: 338 YLFDET-DVIVEFKNLRNPDFQEAIFYKNEQPLLKFAIVNGFRNIQNLVQKLKRGKCPYD 396
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWL 373
+VEVMACP GCLNGG QI+P P+EL LE++Y E + ++P KN V++LY WL
Sbjct: 397 YVEVMACPCGCLNGGAQIRPVDNIQPRELALKLESMYHE-LPESNPEKNKAVQNLYRNWL 455
Query: 374 EQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
++KA H HT+YH + K+ A W
Sbjct: 456 GGEYTDKALAHFHTQYHEIKKADIALAIKW 485
>gi|308801913|ref|XP_003078270.1| putative polyamine oxidase (ISS) [Ostreococcus tauri]
gi|116056721|emb|CAL53010.1| putative polyamine oxidase (ISS) [Ostreococcus tauri]
Length = 2222
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 164/413 (39%), Positives = 243/413 (58%), Gaps = 54/413 (13%)
Query: 1 MLEKQSLDEFLS------NINKG------KAVIISLSPQSRASLAEHFGISPLQVFKKLT 48
+LE+QS+DEFLS ++ +G +++S+SPQS SL + +G+ + K +
Sbjct: 1283 LLEQQSVDEFLSVRKRLRSMGRGIVDWNLGVIVVSVSPQSLCSLGKVYGLDKQDTWTKFS 1342
Query: 49 TFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSN--SSLPMLSSACPGW 106
++ +G ++D S +RDL L+E EF+ ER+N + P+L+SACPGW
Sbjct: 1343 GLMRDMGAYKVYDISGARDLALVETYAEFV-----------ERANGGAPTPLLASACPGW 1391
Query: 107 ICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEA 166
+CYAEK G +P++++ KSPQQ +G +K + + LG PD +YHV+VMPCYDKKLEA
Sbjct: 1392 VCYAEKTHGELAIPHMATTKSPQQIMGTFVKSAVARDLGVSPDRVYHVSVMPCYDKKLEA 1451
Query: 167 AREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP------- 219
+R+DF+ + +VD VLTTGEV+ L L+ L E+P
Sbjct: 1452 SRDDFMRG-------------GVKDVDLVLTTGEVVVL--LEKAGLHHLREAPNYAYDLM 1496
Query: 220 LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL 279
D + E + V+GS GGYAE VFR AA +F I G +E+ +RN D RE L
Sbjct: 1497 CDGFRVPPESEIAAHFVSGS-GGYAEYVFRRAAAEIFNTPIMGAIEWVQLRNMDMREATL 1555
Query: 280 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP 339
V + +L+ A+ YGF+N+QN+VR +KM+KC + FVE+MACPSGCLNGGGQ+ G S
Sbjct: 1556 TVNNEVVLRVAVAYGFRNIQNLVRSLKMKKCKHHFVEIMACPSGCLNGGGQLPAPEGMSN 1615
Query: 340 KELIKTLETIYLENVMLADPFKNPL-VRSLYDEWL-EQPGSEKAKKHVHTEYH 390
KEL+ L+ E+ + + +N + V LY W+ PGS+ A++ + T+YH
Sbjct: 1616 KELVDALD----EHYRIVERERNRVDVDFLYRAWIGGAPGSQPAREILRTQYH 1664
>gi|195116175|ref|XP_002002631.1| GI11683 [Drosophila mojavensis]
gi|259511280|sp|B4KFU7.1|NARF_DROMO RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GI11683
gi|193913206|gb|EDW12073.1| GI11683 [Drosophila mojavensis]
Length = 476
Score = 297 bits (760), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 155/391 (39%), Positives = 239/391 (61%), Gaps = 24/391 (6%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
+K + ++ +++ Q SLA F + + + L+ +L+ LG + T + DL L+E
Sbjct: 108 DKVRTIVFTIAVQPLISLAHRFELGVEEAARHLSGYLRQLGADYVLSTKIADDLALLECR 167
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
EF+ RY R N+ L MLSS+CPGW+CYAEK G++ILP+I++ +SPQQ +G
Sbjct: 168 QEFVERY---------RDNADLSMLSSSCPGWVCYAEKTHGNFILPHIATTRSPQQIMGV 218
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
+K + +KLG IYHVTVMPCYDKKLEA+REDF +++S RD VD
Sbjct: 219 LVKQRLAEKLGVSGSRIYHVTVMPCYDKKLEASREDFYSEVNSS----RD-------VDC 267
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAK 253
V+T+ EV ++Q + + S +D T+ E ++ + SGGYAE ++++AA+
Sbjct: 268 VITSIEVEQMLQTEEQTLQQFAPSDMDWPWTDQPPEAMVWAHESTMSGGYAEHIYKYAAR 327
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-DY 312
LF + L+FK +RN DF E++LE +GK +LKFA+ GF+N+QN+++K+K K Y
Sbjct: 328 ELFNEETPNELQFKALRNRDFSEISLEKDGKIVLKFAIANGFRNIQNLMQKLKRGKGPGY 387
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVEVMACPSGC+NGG Q++P GQ +EL + LE +Y + + ++P N + +Y ++
Sbjct: 388 HFVEVMACPSGCINGGAQVRPTTGQHVRELTQQLEELY-KQLPRSNP-DNAHTKHIYTDF 445
Query: 373 LEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
L+ ++K++ +HT YH V K TA W
Sbjct: 446 LDGTQTDKSQSLLHTSYHAVEKLNTALNIKW 476
>gi|357624217|gb|EHJ75079.1| hypothetical protein KGM_01773 [Danaus plexippus]
Length = 484
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 168/420 (40%), Positives = 246/420 (58%), Gaps = 35/420 (8%)
Query: 1 MLEKQSLDEFLSNINKGK------------AVIISLSPQSRASLAEHFGISPLQVFKKLT 48
++ KQS +E L ++ K ++IS+SPQ SLA + + P + +KL
Sbjct: 83 LITKQSQEELLRVFSERKYTDSRGVIQDVSLIVISISPQPLLSLAVRYKLEPEEATRKLA 142
Query: 49 TFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWIC 108
+ +SLG + D + + DL+L+EA EF+ RY+ +SD + +LPML+SACPGW+C
Sbjct: 143 GYFRSLGADLVLDMTVAEDLSLMEAQQEFVQRYRDQADSDVK----TLPMLASACPGWVC 198
Query: 109 YAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAR 168
YAEK GSYILPYIS+ KS QQ +G+ +K + K P +YHVT+MPCYDKKLEA+R
Sbjct: 199 YAEKAHGSYILPYISTTKSSQQVMGSLVKQFLATKRQLAPAALYHVTLMPCYDKKLEASR 258
Query: 169 EDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD-----KM 223
EDF +E L +VD V+T E+ ++ + + +S LD M
Sbjct: 259 EDFY-----------NEILNCHDVDCVITPIELEQMLTNQDKDLSDFPDSSLDWCWDVAM 307
Query: 224 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG 283
V G + SGG A+ VF +AA+ LFG+ + L +K +RN DFRE+ LE +G
Sbjct: 308 TPGVRRHGGRGAGSSGSGGLADEVFMYAARELFGEE-DVPLVYKNLRNPDFREITLEKDG 366
Query: 284 KTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI 343
+ +L+FA+ GF+N+QN+V+K+K K Y +VEVMACPSGCLNGG Q++P G+S + L+
Sbjct: 367 REVLRFAIANGFRNIQNLVQKLKRGKSPYHYVEVMACPSGCLNGGAQVRPTEGESGRALV 426
Query: 344 KTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
L+ + +E + A+P VR L+ WL G E+A+ +HT YH V + A W
Sbjct: 427 GRLQEL-METLPPAEP-SGTAVRHLWSAWLGAAGPERARHALHTTYHAVQSNDIALTTKW 484
>gi|327264677|ref|XP_003217138.1| PREDICTED: nuclear prelamin A recognition factor-like isoform 2
[Anolis carolinensis]
Length = 411
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 158/388 (40%), Positives = 233/388 (60%), Gaps = 23/388 (5%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K K + +S+ PQS A F + + K+L FLK LGV +FDT+ + D +++E
Sbjct: 39 DTSKHKVLAVSICPQSLPYFAAKFNLCVTEAAKRLCGFLKCLGVHYVFDTTIAADFSILE 98
Query: 73 ACNEFIARYK-QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQT 131
+ EF+ RY+ Q+QE +LPM +SACPGWI YAE+ L S + P+I + KSPQQ
Sbjct: 99 SQKEFVQRYRNQNQEE------HALPMFASACPGWIQYAERVLSSLVTPHICTAKSPQQI 152
Query: 132 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 191
+G+ IK + ++ D+I+H+ V PCYDKKLEA RED L Y + +
Sbjct: 153 MGSLIKGYFARQQNLSSDKIFHIIVAPCYDKKLEALREDVYAPL------YHSQ-----D 201
Query: 192 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHA 251
VD VLT+GEV +++ + V+ + E P D + +++ + S GY E +F+HA
Sbjct: 202 VDCVLTSGEVFQVMEQRKVSLKEAAEVPFDTLFGGINESDLMRHDGRRSDGYLEHIFKHA 261
Query: 252 AKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
AK LF ++ L +K ++N DF+EV LE G+T+L+FA YGF+N+QN+V K+K KC
Sbjct: 262 AKELFDTEVK-ELTYKVLKNKDFQEVTLEKGGETVLRFAAAYGFRNIQNMVLKLKKGKCS 320
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDE 371
Y FVEV+ACP GCLNG GQ + + G+ K L+K +E +Y V + P N V+ LY E
Sbjct: 321 YHFVEVLACPGGCLNGKGQAQTEDGKPDKALLKQMEEVYAA-VPVQLPETNGHVQKLYQE 379
Query: 372 WLEQPGSEKAKKHVHTEY---HPVVKSI 396
WLE S K ++ +HT+Y PV S+
Sbjct: 380 WLEGMDSVKVQQSLHTKYSSEKPVANSL 407
>gi|327264675|ref|XP_003217137.1| PREDICTED: nuclear prelamin A recognition factor-like isoform 1
[Anolis carolinensis]
Length = 459
Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 158/388 (40%), Positives = 233/388 (60%), Gaps = 23/388 (5%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K K + +S+ PQS A F + + K+L FLK LGV +FDT+ + D +++E
Sbjct: 87 DTSKHKVLAVSICPQSLPYFAAKFNLCVTEAAKRLCGFLKCLGVHYVFDTTIAADFSILE 146
Query: 73 ACNEFIARYK-QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQT 131
+ EF+ RY+ Q+QE +LPM +SACPGWI YAE+ L S + P+I + KSPQQ
Sbjct: 147 SQKEFVQRYRNQNQEE------HALPMFASACPGWIQYAERVLSSLVTPHICTAKSPQQI 200
Query: 132 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 191
+G+ IK + ++ D+I+H+ V PCYDKKLEA RED L Y + +
Sbjct: 201 MGSLIKGYFARQQNLSSDKIFHIIVAPCYDKKLEALREDVYAPL------YHSQ-----D 249
Query: 192 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHA 251
VD VLT+GEV +++ + V+ + E P D + +++ + S GY E +F+HA
Sbjct: 250 VDCVLTSGEVFQVMEQRKVSLKEAAEVPFDTLFGGINESDLMRHDGRRSDGYLEHIFKHA 309
Query: 252 AKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
AK LF ++ L +K ++N DF+EV LE G+T+L+FA YGF+N+QN+V K+K KC
Sbjct: 310 AKELFDTEVK-ELTYKVLKNKDFQEVTLEKGGETVLRFAAAYGFRNIQNMVLKLKKGKCS 368
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDE 371
Y FVEV+ACP GCLNG GQ + + G+ K L+K +E +Y V + P N V+ LY E
Sbjct: 369 YHFVEVLACPGGCLNGKGQAQTEDGKPDKALLKQMEEVYAA-VPVQLPETNGHVQKLYQE 427
Query: 372 WLEQPGSEKAKKHVHTEY---HPVVKSI 396
WLE S K ++ +HT+Y PV S+
Sbjct: 428 WLEGMDSVKVQQSLHTKYSSEKPVANSL 455
>gi|195385200|ref|XP_002051294.1| GJ13047 [Drosophila virilis]
gi|259511293|sp|B4LQR5.1|NARF_DROVI RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GJ13047
gi|194147751|gb|EDW63449.1| GJ13047 [Drosophila virilis]
Length = 476
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 160/405 (39%), Positives = 244/405 (60%), Gaps = 25/405 (6%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
+ E Q+L N ++ + ++ ++S Q SLA + + + + L +L+ LG +
Sbjct: 95 LRENQTLKASGDN-DQVRTIVFTISVQPLLSLAHRYDLGVEEASRYLAGYLRQLGADYVL 153
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
T + DL L+E EF+ R+ R N+ L MLSS+CPGW+CYAEK G++ILP
Sbjct: 154 CTKIADDLALLECRQEFVERF---------RDNAELSMLSSSCPGWVCYAEKTHGNFILP 204
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+I++ +SPQQ +G +K + +KLG IYH T+MPCYDKKLEA+REDF +++
Sbjct: 205 HIATTRSPQQIMGVLVKQLLAEKLGVPGSRIYHATIMPCYDKKLEASREDFYSEVNGS-- 262
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG-VAGS 239
RD VD V+T+ EV ++Q + + E S +D T+ E ++ A
Sbjct: 263 --RD-------VDCVITSIEVEQMLQAEEQTLQQFEPSDIDWPWTDQQPEFPVWAHEATM 313
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQ 299
SGGYAE +F++AAK LF + L+FK +RN DF E++LE +GKT+LKFA+ GF+N+Q
Sbjct: 314 SGGYAEHIFKYAAKELFSEETPNELQFKALRNRDFSEISLEKDGKTVLKFAIANGFRNIQ 373
Query: 300 NIVRKVKMRKC-DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD 358
N+V+K+K K Y FVEVMACPSGC+NGG Q++P GQ +EL + LE +Y + + ++
Sbjct: 374 NLVQKLKRGKGPGYHFVEVMACPSGCINGGAQVRPTTGQHVRELTQQLEELY-KQLPRSN 432
Query: 359 PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
P N + +Y ++L+ ++K+ + +HT YH V K TA W
Sbjct: 433 P-DNSYTKQIYTDFLDGAHTDKSLELLHTSYHAVEKLNTALNIKW 476
>gi|195030456|ref|XP_001988084.1| GH10760 [Drosophila grimshawi]
gi|259511279|sp|B4JBE6.1|NARF_DROGR RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GH10760
gi|193904084|gb|EDW02951.1| GH10760 [Drosophila grimshawi]
Length = 476
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 157/388 (40%), Positives = 234/388 (60%), Gaps = 24/388 (6%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ ++ ++S Q SLA + +S + + L +L+ LG + T + DL L+E EF
Sbjct: 111 RTIVFTISVQPLLSLAHRYDLSLEEAGRHLAGYLQQLGADYVLCTKIADDLALLECRQEF 170
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R+ R+N+ L MLSS+CPGW+CYAEK G++ILP+I++ +SPQQ +G +K
Sbjct: 171 VERF---------RNNAELSMLSSSCPGWVCYAEKTHGNFILPHIATTRSPQQIMGVLVK 221
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+ +KLG IYHVT+MPCYDKKLEA+REDF ++ S RD VD V+T
Sbjct: 222 QLLAEKLGVSGSRIYHVTIMPCYDKKLEASREDFYSEVSSS----RD-------VDCVIT 270
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLF 256
EV ++Q + + E L T+ E L+ + SGGYAE +F++AAK LF
Sbjct: 271 AIEVEQMLQAEEQTLQQFEPKDLHWPWTDQQPESMLWAHESTMSGGYAEHIFKYAAKELF 330
Query: 257 GKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-DYQFV 315
+ L+F+ +RN DF E+ LE EGK LLKFA+ GF+N+QN+V+K+K K YQFV
Sbjct: 331 NEDTPTELQFRALRNRDFSEICLEKEGKVLLKFAIANGFRNIQNLVQKLKRGKGPGYQFV 390
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQ 375
EVMACPSGC+NGG Q++P GQ ++L + LE +Y + + ++P N + +Y ++ +
Sbjct: 391 EVMACPSGCINGGAQVRPTTGQHVRQLTQQLEELY-KQLPRSNP-DNTHTKQIYADFFDG 448
Query: 376 PGSEKAKKHVHTEYHPVVKSITAQLHNW 403
++K+ + +HT YH V K TA W
Sbjct: 449 THTDKSAQLLHTSYHAVEKLNTALNIKW 476
>gi|302849037|ref|XP_002956049.1| hypothetical protein VOLCADRAFT_66610 [Volvox carteri f.
nagariensis]
gi|300258554|gb|EFJ42789.1| hypothetical protein VOLCADRAFT_66610 [Volvox carteri f.
nagariensis]
Length = 417
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 161/409 (39%), Positives = 244/409 (59%), Gaps = 24/409 (5%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSI 59
+L++QS DEFLS + + V++++SPQSR +LA ++G+ P Q +L +LK LGV+++
Sbjct: 27 LLQQQSGDEFLSRLADPHTTVVVTVSPQSRTALAAYYGLCPSQALARLVGWLKWLGVRAV 86
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPG--WICYAEKQLGSY 117
+D + +RDL L+E EF+ R+ S LP++ S+CPG W+CYAEK G+
Sbjct: 87 WDLTTARDLVLLEEAAEFMNRWVCMYVS-----AGPLPVMGSSCPGTGWVCYAEKTHGTR 141
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+LPY+S+ +SPQ +G +K + G P +YHVT+MPCYDKKLEA+R++ +
Sbjct: 142 VLPYLSTTRSPQGAMGGLVKSLVAAAWGVTPGSLYHVTIMPCYDKKLEASRDELTTTATT 201
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
D V L EV+ V PL + DD+ +
Sbjct: 202 TTAAGTDAAGAGAAVGGPLP--EVM-------VRHATAAPDPLLPGVVPADDQLYSLPHG 252
Query: 238 GSSGGYAETVFRHAAKTLFG-KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQ 296
SSGGYA+ VFR AA+ L+G +V G L ++T RN+D + + G++L+ A YGF+
Sbjct: 253 SSSGGYADFVFRTAARELWGVEVPPGPLPWRTRRNADLQP-RVGAPGQSLV-VARVYGFR 310
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVML 356
N+Q +++++K +C Y +VEVMACPSGCLNGGGQIKP PG +P++LI+ LE +Y +V
Sbjct: 311 NIQTLLQQLKRGRCPYHYVEVMACPSGCLNGGGQIKPGPGVTPQQLIEQLELLY--DVAA 368
Query: 357 ADPFKNPLVRSLYDEWL-EQPGSEKAKKHVHTEYHPVVKSITAQ-LHNW 403
P NP V +LY WL +PG+ A++ +HT + K++TA + NW
Sbjct: 369 RSPADNPAVAALYGSWLGGRPGAPPARQLLHTTFREREKTVTAATVTNW 417
>gi|325187084|emb|CCA21626.1| nuclear prelamin A recognition factorlike protein pu [Albugo
laibachii Nc14]
Length = 517
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 162/390 (41%), Positives = 242/390 (62%), Gaps = 30/390 (7%)
Query: 21 IISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIAR 80
I+++S SRASLA HF + V KL TF ++LG IFDT C ++ L+EA EF+ R
Sbjct: 131 IMTISSASRASLAAHFNLPIHVVHCKLVTFFRTLGFDLIFDTGCFENIMLLEARQEFLYR 190
Query: 81 YK----------QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 130
Y+ Q++ D ++LPML+S+CPGWICYAEK + LP+I + KSPQQ
Sbjct: 191 YQNQTPTPWNHTQTESDSDPAIPTALPMLASSCPGWICYAEKAQPN-ALPFIDTTKSPQQ 249
Query: 131 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 190
G +K + ++ D+++HVT+MPC+DKKLEA+R+DF + E RD
Sbjct: 250 IAGTIVKDFLSREFLIESDQVFHVTLMPCFDKKLEASRKDF-----QRSEDNRD------ 298
Query: 191 EVDSVLTTGEVLDLIQLKAVNFEALEESPL---DKMLTNVDDEGHL-YGVA--GSSGGYA 244
VD VL T E++DL Q + + F+ L+E+ L + ++ + +G + YG + SSGG
Sbjct: 299 -VDCVLATSELIDLFQAQKIEFKDLKEASLTQKEAQMSGISPDGQIVYGSSPFASSGGQL 357
Query: 245 ETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRK 304
E +FR+AAK LF I G LE+ RN DFREV+L ++GK +L FA+ YGF+N+Q+++ K
Sbjct: 358 EHIFRYAAKNLFNVDICGPLEYSIGRNPDFREVSLSIQGKVVLHFAIAYGFRNIQSVITK 417
Query: 305 VKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPL 364
++ KC Y +VEVMACPSGCLNGGGQIKP L+ ++ T + + DP K+
Sbjct: 418 LRRGKCSYHYVEVMACPSGCLNGGGQIKPSSSLESSTLVSSV-TKRFQELREYDPQKDAF 476
Query: 365 VRSLYDEWLEQPGSEKAKKHVHTEYHPVVK 394
+ +Y+++ ++P S+ A++ +HT+Y V K
Sbjct: 477 CKYIYEKYFDKPFSQVAQRALHTKYRRVPK 506
>gi|363740787|ref|XP_415606.3| PREDICTED: nuclear prelamin A recognition factor [Gallus gallus]
Length = 459
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 150/391 (38%), Positives = 237/391 (60%), Gaps = 18/391 (4%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K K + +S+ PQS A F +S K+L FLKSLGV +FDT+ + D +++E
Sbjct: 87 DTSKHKVLAVSICPQSLPYFAAKFSLSVNDAAKRLCGFLKSLGVHYVFDTTIAADFSILE 146
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EF+ RY++ + + +LPM +SACPGWI YAE+ L + + P+I + KSPQQ +
Sbjct: 147 SQREFVQRYQRRNQEE-----HALPMFASACPGWIRYAERVLTNLVTPHICTAKSPQQIM 201
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ +K + ++ P++I+HV V PCYDKKLEA REDF L + +E V
Sbjct: 202 GSLVKGYFARQQNLSPEKIFHVVVAPCYDKKLEALREDFYTALYNSQE-----------V 250
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLT+GE++ +++ K V+ + + E +D + + + + S GY E +F+HAA
Sbjct: 251 DCVLTSGEIVQIMEQKNVSMKDVTEVAVDSLFGEIKEGDVVRHDGKRSDGYLEHIFKHAA 310
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LFG ++ + +K ++N DF+EV LE +G+T+L+FA YGF+N+QN+V K+K K Y
Sbjct: 311 KELFGMDVK-EITYKALKNKDFQEVTLEKDGETVLRFAAAYGFRNIQNMVLKLKKGKFLY 369
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVEV+ACP GCLNG GQ + + G+ K L+ +E +Y + + P N V+ +Y +W
Sbjct: 370 HFVEVLACPGGCLNGKGQTQTEDGKPDKALLSQMEDVYAA-IPVRLPEANVYVQKMYQDW 428
Query: 373 LEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
LE S K ++ +HT+Y V ++ + W
Sbjct: 429 LEGMDSRKVQETLHTKYSAVNQTASNLDIKW 459
>gi|224074857|ref|XP_002193820.1| PREDICTED: nuclear prelamin A recognition factor isoform 1
[Taeniopygia guttata]
Length = 459
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 153/391 (39%), Positives = 234/391 (59%), Gaps = 18/391 (4%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K K + +SL PQS A F S + K+L FLKSLGV +FDT+ + D +++E
Sbjct: 87 DTSKHKILAVSLCPQSLPYFAAKFNFSVNEAAKRLCGFLKSLGVHYVFDTTIAADFSILE 146
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EF+ RY++ + + +LPM +SACPGWI YAE+ L + + +I + KSPQQ +
Sbjct: 147 SQREFVQRYQRRNQEE-----HALPMFASACPGWIRYAERVLTNLVTSHICTAKSPQQIM 201
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ +K + ++ PD+I+HV V PCYDKKLEA REDF L + EV
Sbjct: 202 GSLVKGYFARQQNLSPDKIFHVVVAPCYDKKLEALREDFYTALYNS-----------AEV 250
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLT+GE++ +++ K V+ + + E +D + + + + S GY E +F+HAA
Sbjct: 251 DCVLTSGEIVQIMEQKNVSMKDVTEVAVDSLFDGLKEGDVVRHDGKRSDGYLEHIFKHAA 310
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LFG ++ + +K ++N DFREV LE +G+T+L+FA YGF+N+QN+V K+K K Y
Sbjct: 311 KELFGVDVK-EITYKALKNKDFREVTLEKDGETVLRFAAAYGFRNIQNMVLKLKKGKFFY 369
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVEV+ACP GCLNG GQ + + G+ K L+ +E +Y + + P N V+ +Y +W
Sbjct: 370 HFVEVLACPGGCLNGKGQAQTEDGKPDKALLAQMEEVYTA-IPVRLPEANLHVQRMYQDW 428
Query: 373 LEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
LE S K + +HT Y V +S ++ W
Sbjct: 429 LEGMDSRKVQDTLHTTYSAVNQSTSSLDIKW 459
>gi|195434493|ref|XP_002065237.1| GK14772 [Drosophila willistoni]
gi|259511294|sp|B4MUM8.1|NARF_DROWI RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GK14772
gi|194161322|gb|EDW76223.1| GK14772 [Drosophila willistoni]
Length = 477
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 154/388 (39%), Positives = 233/388 (60%), Gaps = 24/388 (6%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ ++ ++S Q SLA + +S + + L+ + ++LG + T + DL LIE EF
Sbjct: 112 QTIVFTISMQPILSLAHRYQLSVEETARHLSGYFRNLGADYVLCTKVADDLALIECRQEF 171
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R+ R L MLSS+CPGW+CYAEK G++ILPYI++ +SPQQ +G +K
Sbjct: 172 VERF---------RDKEDLTMLSSSCPGWVCYAEKTHGNFILPYIATTRSPQQIMGVLVK 222
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
H + +K IYH TVMPCYDKKLEA+REDF +++ +VD V+T
Sbjct: 223 HFLAEKFNVPGSRIYHATVMPCYDKKLEASREDFYSEVNGSR-----------DVDCVIT 271
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG-VAGSSGGYAETVFRHAAKTLF 256
+ EV ++ + E LD T+ E ++ A SGGYAE +F++AAK LF
Sbjct: 272 SIEVEQMLMEDERSLSQHEPVDLDWPWTDQRPESMIWAHEATMSGGYAEHIFKYAAKELF 331
Query: 257 GKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK-CDYQFV 315
+ + L+FK +RN DFRE++LE + KT+LKFA+ GF+N+QN+V+K+K K +Y FV
Sbjct: 332 SEDTDNELKFKQLRNRDFREISLEKDDKTVLKFAIANGFRNIQNLVQKLKRGKGANYHFV 391
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQ 375
EVMACPSGC+NGG Q++P GQ +EL + LE +Y + + ++ P N +++Y ++L+
Sbjct: 392 EVMACPSGCINGGAQVRPTTGQHVRELTQQLEELY-KKLPISQP-DNSHTKAIYGDFLDG 449
Query: 376 PGSEKAKKHVHTEYHPVVKSITAQLHNW 403
++K+ +HT YH V K TA W
Sbjct: 450 AHTDKSHDLLHTSYHAVEKLNTALNIKW 477
>gi|118791474|ref|XP_319772.3| AGAP009023-PA [Anopheles gambiae str. PEST]
gi|259511483|sp|Q7PWB8.3|NARF_ANOGA RecName: Full=Probable cytosolic Fe-S cluster assembly factor
AGAP009023
gi|116117618|gb|EAA14804.3| AGAP009023-PA [Anopheles gambiae str. PEST]
Length = 478
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 157/389 (40%), Positives = 237/389 (60%), Gaps = 25/389 (6%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K V+ ++S Q SLA + ++P F+ + + K LG + DT + DL LIE NEF
Sbjct: 112 KFVVFTVSQQPILSLARKYNLTPEDTFEHIAGYFKKLGADMVVDTKIADDLALIECRNEF 171
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
I RY +++ LPML+S+CPGW+CYAEK G++ILPYI++ +SPQQ +G +K
Sbjct: 172 IERYNTNRKL--------LPMLASSCPGWVCYAEKTHGNFILPYIATTRSPQQIMGVLVK 223
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
++ ++L D IYHVTVMPCYDKKLEA+REDF S+ E RD VD V+T
Sbjct: 224 QYLAKQLQTTGDRIYHVTVMPCYDKKLEASREDFF----SEVENSRD-------VDCVIT 272
Query: 198 TGEVLDLIQ-LKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTL 255
+ E+ ++ L + + +E +D V ++G S SGGYAE +F++AA+ L
Sbjct: 273 SIEIEQMLNSLDLPSLQLVERCAIDWPWPTVRPSAFVWGHESSGSGGYAEYIFKYAARKL 332
Query: 256 FGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
F ++ + FK +RN+D RE LE G+ L++FA+ GF+N+QN+V+K+K K Y +V
Sbjct: 333 FNVQLDT-VAFKPLRNNDMREAVLEQNGQVLMRFAIANGFRNIQNMVQKLKRGKSTYDYV 391
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQ 375
E+MACPSGCLNGG QI+P+ G++ +EL LE +Y ++ + P +N V+++Y + +
Sbjct: 392 EIMACPSGCLNGGAQIRPEEGRAARELTAELECMY-RSLPQSTP-ENDCVQTMYATFFDS 449
Query: 376 PGS-EKAKKHVHTEYHPVVKSITAQLHNW 403
G K + +HT YH + K +A W
Sbjct: 450 EGDLNKRQSLLHTSYHQIEKINSALNIKW 478
>gi|195164554|ref|XP_002023111.1| GL21135 [Drosophila persimilis]
gi|198473422|ref|XP_002133255.1| GA29080 [Drosophila pseudoobscura pseudoobscura]
gi|259511281|sp|B4GXC8.1|NARF_DROPE RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GL21135
gi|259511282|sp|B5DK31.1|NARF_DROPS RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GA29080
gi|194105196|gb|EDW27239.1| GL21135 [Drosophila persimilis]
gi|198139449|gb|EDY70657.1| GA29080 [Drosophila pseudoobscura pseudoobscura]
Length = 477
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/393 (39%), Positives = 233/393 (59%), Gaps = 24/393 (6%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
++ + + ++ +++ Q SLA + +S + + L + +SLGV + T + DL L+E
Sbjct: 107 DMEQVRTIVFTIATQPLLSLAHRYQLSAEETARHLAGYFRSLGVDYVLCTKVADDLALLE 166
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
EF+ RY R N L MLSS+CPGW+CYAEK G++ILPYI++ +SPQQ +
Sbjct: 167 CQQEFVERY---------RDNEELTMLSSSCPGWVCYAEKTHGNFILPYIATTRSPQQIM 217
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G +K + +KL IYHVTVMPCYDKKLEA+R DF +++ E +V
Sbjct: 218 GVLVKQFLAEKLNIPGSRIYHVTVMPCYDKKLEASRMDFYSEVN-----------ESRDV 266
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHA 251
D V+T+ EV ++ + E S LD + E ++ + SGGYAE +F+ A
Sbjct: 267 DCVITSVEVEQMLNEDERSLSEHEASDLDWPWSEQRPESMVWSHEATLSGGYAEHIFKFA 326
Query: 252 AKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK-C 310
AK LF + L FK +RN DFRE++LE + KT+LKFA+ GF+N+QN+V+K+K K
Sbjct: 327 AKELFNEAPPTELSFKQLRNRDFREISLEKDDKTVLKFAIANGFRNIQNLVQKLKRGKGA 386
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYD 370
Y FVEVMACPSGC+NGG Q++P GQ +EL + LE +Y + + + P N + +Y
Sbjct: 387 SYHFVEVMACPSGCINGGAQVRPTTGQHVRELTQQLEELY-KKLPRSQP-DNAHTKLIYR 444
Query: 371 EWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
++L+ ++K+ + +HT YH V K TA W
Sbjct: 445 DFLDGSHTDKSNELLHTSYHAVEKLSTALNIKW 477
>gi|384495843|gb|EIE86334.1| hypothetical protein RO3G_11045 [Rhizopus delemar RA 99-880]
Length = 437
Score = 290 bits (742), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 175/434 (40%), Positives = 261/434 (60%), Gaps = 61/434 (14%)
Query: 1 MLEKQSLDEFLSNINKGK--AVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVK 57
++ QSL+EF + + +IS+SPQSRASLA + ++P+QV K+LT F K LG+
Sbjct: 17 LISMQSLEEFYKILEQKTYTTTVISISPQSRASLAAKYQLTPIQVHKRLTYFFKHILGIH 76
Query: 58 SIFDTSCSRDLTLIEACNEFIARYK-----------------QSQESDDERSN------- 93
+FDT+ ++DL+L+E+ EF+ R+K Q +E RS
Sbjct: 77 HVFDTAFTQDLSLVESAREFMDRFKFYMANGGEEIEKVAQQQQQEEGPSVRSRRGGGAKA 136
Query: 94 ---SSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDE 150
+PML+S+CPGW+CYAEK G ILPYIS+ KSPQQ +G+ +K+++ K ++
Sbjct: 137 KKIEGMPMLASSCPGWVCYAEKTHGE-ILPYISTTKSPQQMMGSLVKNYLANKTNTSANQ 195
Query: 151 IYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAV 210
IYHVTVMPCYDKKLEA+R DF Q+D +I +VD VLTT E+ ++Q +
Sbjct: 196 IYHVTVMPCYDKKLEASRPDF--QID-----------DIRDVDCVLTTSEIDQMLQ--SH 240
Query: 211 NFEALEESPLDKMLTNV-----DDEGHLYGVAGSSGGYA-ETVFRHAAKTLFGKVIEGHL 264
+F + E+P++ M V + ++GV GSS G + E + AA+ LFG + H+
Sbjct: 241 DFLQMPEAPVEDMFNKVGVDPETSQETVFGVPGSSSGGSLEYIMATAARELFGASTD-HV 299
Query: 265 EFKTIRNSDFREVAL-EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSG 323
K +N+D E +L +G+ LL+FA YGF+N+QN+VRK+K KC Y +VEVMACP G
Sbjct: 300 TMKVGKNADVCEYSLMSDDGRPLLRFASAYGFRNIQNLVRKIKQGKCIYHYVEVMACPGG 359
Query: 324 CLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKK 383
C NGGGQI P + KE + +E+IY + P +N +++++Y+EW+ G + AK+
Sbjct: 360 CANGGGQIIPV-NVNAKEWLNQVESIYRSAKGIW-PEENEMIKTIYNEWI---GDDMAKR 414
Query: 384 H--VHTEYHPVVKS 395
+HT+YH V +S
Sbjct: 415 QLLLHTQYHAVTQS 428
>gi|348502365|ref|XP_003438738.1| PREDICTED: nuclear prelamin A recognition factor-like [Oreochromis
niloticus]
Length = 462
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 149/379 (39%), Positives = 235/379 (62%), Gaps = 20/379 (5%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K K ++ S+ PQS A FG+ + KL FLK +GV+ +FDT+ + +++E
Sbjct: 87 DASKHKVLVASVCPQSLPFFAVKFGVDITEAAHKLCGFLKHIGVQYVFDTTLAAGFSILE 146
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EFI RY++ + +LPM +S+CPGWI Y+E+ LGS + P+I + +SPQQ +
Sbjct: 147 SQKEFIQRYRRRHHD-----SHALPMFTSSCPGWIRYSERVLGSLVTPHICTARSPQQIM 201
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G +K + ++ P+++YHV V PC+DKKLEA RE+F + LE +V
Sbjct: 202 GCLVKDYFSKQQKLSPEKLYHVVVAPCFDKKLEAVREEFYNSM-----------LETRDV 250
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLT+G++ L++ + V+ E L+ PLD++L + D + S G+ E VF+HAA
Sbjct: 251 DCVLTSGQIYYLMEQRKVSVEELDSVPLDQVLGDGGDVALVRHDGRGSEGFLEHVFKHAA 310
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LFG ++ + +KT+RN DF+EV LE +G+TLL+FA YGF+N+Q +V +++ + Y
Sbjct: 311 KELFGVDVQ-EITYKTLRNRDFQEVTLERDGETLLQFAAVYGFRNIQTLVHRMRKGRVPY 369
Query: 313 QFVEVMACPSGCLNGGGQIKPK--PGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYD 370
Q VEV++CP GCL+G GQ + + G+ K L+ +E IY ++ + P NP + +LY
Sbjct: 370 QLVEVLSCPGGCLSGRGQAESEGGAGRLDKALVNQMEEIY-SSLPVRLPEFNPALHTLYQ 428
Query: 371 EWLEQPGSEKAKKHVHTEY 389
EWLE S +A+K +HTEY
Sbjct: 429 EWLEGQDSSQARKLLHTEY 447
>gi|50539744|ref|NP_001002342.1| nuclear prelamin A recognition factor [Danio rerio]
gi|82183313|sp|Q6DHP6.1|NARF_DANRE RecName: Full=Nuclear prelamin A recognition factor
gi|49902735|gb|AAH75921.1| Nuclear prelamin A recognition factor [Danio rerio]
Length = 465
Score = 286 bits (733), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 145/396 (36%), Positives = 242/396 (61%), Gaps = 26/396 (6%)
Query: 2 LEKQSLDEF--------LSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
+ +Q+LDE + +K K +++S+ PQS A F + +KL FLKS
Sbjct: 71 ISQQNLDEINHVLALNKKCDTSKHKILVVSVCPQSVPFFAVKFQLDVSAAAQKLCGFLKS 130
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
+GV +FDT+ + +++E+ EF+ RY++ + ++PM +S+CPGWI YAE+
Sbjct: 131 VGVHYVFDTTIAASFSILESQREFVQRYRRKHHDAN-----AMPMFTSSCPGWIRYAERV 185
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LGS + P+I + +SPQQ +G+ +K+ ++ P++++HV V PC+DKKLEA R++F
Sbjct: 186 LGSVVTPHICTARSPQQIMGSLVKNFFARQQKLTPEQVFHVVVAPCFDKKLEAVRDEFYN 245
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
+ LE +VD VLT+GE+L L++ V E ++ +PLD ++ + D G
Sbjct: 246 SI-----------LESRDVDCVLTSGEILHLMEQSKVTVEEVDSAPLDHVIGEISDSGLT 294
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
S G+ E +F+HAAK +FG ++ + +KT+RN DF+EVALE +G+TLL+FA Y
Sbjct: 295 RHDGRGSEGFLEHIFKHAAKEIFGLDVQD-IVYKTLRNRDFQEVALERDGETLLQFAAVY 353
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+Q +V +++ K YQ +EV++CP GCL+G GQ + + G+ + L++ +E Y +
Sbjct: 354 GFRNIQTLVHRMRKGKVPYQLIEVLSCPGGCLSGRGQAEGEGGRPDRTLVQQMEEHY-SS 412
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + P NP V+ LY +WL+ S A++ +HT+Y
Sbjct: 413 LPVRLPETNPEVQRLYQDWLDGHDSPHAQQSLHTQY 448
>gi|255075911|ref|XP_002501630.1| predicted protein [Micromonas sp. RCC299]
gi|226516894|gb|ACO62888.1| predicted protein [Micromonas sp. RCC299]
Length = 542
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 180/430 (41%), Positives = 246/430 (57%), Gaps = 48/430 (11%)
Query: 1 MLEKQSLDEFLSNI-----NKGKAV-IISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL 54
+LE QS+DEF + + G+ V ++S++PQSRASLA G+S + K+LT F KS+
Sbjct: 95 LLEAQSVDEFKQQVAACAQSGGRRVTVVSVAPQSRASLAHAAGLSAIDAAKRLTGFFKSM 154
Query: 55 GVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQL 114
GV ++FDT+ +RD +L+EA EF+ R++ +Q + ++ + LP+L+SACPGW+CYAEKQ
Sbjct: 155 GVVAVFDTTAARDFSLLEAGEEFVERFR-AQNQNQSQNQNPLPVLASACPGWVCYAEKQ- 212
Query: 115 GSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQ 174
+LP+IS+VKSPQQ +G +K + LG P ++HV VMPCYDKKLEA+R DF +
Sbjct: 213 SPGVLPHISNVKSPQQVMGTIVKRRVAASLGLDPAAVFHVAVMPCYDKKLEASRGDFRGE 272
Query: 175 LDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK-MLTNVDDEGHL 233
P+VD VLTTGEV +L+ A E + L
Sbjct: 273 PGVGGGDG----EGPPDVDCVLTTGEVAELLA-GAYGIAVKERDGYSTEAAGAREGAAAL 327
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT--IRNSDFREVALE-VEGKTLLKFA 290
G SGGY E VFR+AA +FG + G LE+K RN D REV LE +G TLL+FA
Sbjct: 328 ARGGGGSGGYLEHVFRYAAAKIFGIEVRGALEYKIPRARNPDLREVTLEGPDGTTLLRFA 387
Query: 291 LCYGFQNLQNIVRKVK-----------MRKCDYQFVEVMACPSGCLNGGGQI-------- 331
YGF+N+QN+VRK+K C Y +VE+MACPSGCLNGGGQ+
Sbjct: 388 QAYGFRNIQNMVRKIKPTAHDIHLGTSRDGCGYDYVEIMACPSGCLNGGGQLPPPPPPGE 447
Query: 332 -------KPKPGQSPKELIKTLETIYL---ENVMLADPFKNPLVRSLYDEWLEQP-GSEK 380
+P+ + KEL+ LET Y V P +P V Y +W+ GSE+
Sbjct: 448 IAGSGGARPR-AMTAKELVDELETKYRWGDGTVEPRPPDASPEVAEAYRDWVRGAVGSER 506
Query: 381 AKKHVHTEYH 390
A+ HT YH
Sbjct: 507 ARALFHTRYH 516
>gi|427787813|gb|JAA59358.1| Putative nuclear architecture related protein [Rhipicephalus
pulchellus]
Length = 481
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 158/395 (40%), Positives = 234/395 (59%), Gaps = 27/395 (6%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K K ++++++PQ AS A + + KLT F K+LG + D++ R+ LIE
Sbjct: 107 KRKLIVVTVAPQVAASFAGKYSVDYESASAKLTGFFKTLGAHYVLDSTFGREFALIEVLR 166
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
+FI R+ + ++SD ++LP+L+S+CPG++CYAEK G +LP+IS +SPQQ +G+
Sbjct: 167 DFIERWAR-RDSD----RTALPLLASSCPGFVCYAEKTHGDVLLPHISRARSPQQIMGSL 221
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+K + +LG + D+IYHV+VMPCYDKKLEA+R DF DE +VD V
Sbjct: 222 VKKFLASRLGKKADQIYHVSVMPCYDKKLEASRADFY-----------DEIYSTRDVDCV 270
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKT 254
+T+ EV ++ + +F+ L + D + + G Y GS SGGY E VF AA+
Sbjct: 271 ITSVEVESMLAKEDKSFDELPSAASDSLF-RCEVGGRPYRHPGSGSGGYCEYVFVEAARL 329
Query: 255 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
LF + E + FKT+RN DFREV LE+ G+T+L+FA+ GF+N+QN+V+K+K KC Y F
Sbjct: 330 LFHRRPE-EVVFKTLRNQDFREVTLELGGETVLRFAIANGFRNIQNVVQKMKRAKCPYHF 388
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW-- 372
+E+MACP+GCLNGG Q++P G S + L++ +E Y V P N V +Y +W
Sbjct: 389 IEIMACPAGCLNGGAQLRPDDGDS-RALLRRVEDAY-NAVQCQPPGANKAVLEVYRDWLG 446
Query: 373 LEQP----GSEKAKKHVHTEYHPVVKSITAQLHNW 403
LE P G + T YH + K+ A W
Sbjct: 447 LEDPLHGTGGSGDATLLRTTYHALEKTTNALNIRW 481
>gi|410928066|ref|XP_003977422.1| PREDICTED: nuclear prelamin A recognition factor-like [Takifugu
rubripes]
Length = 460
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 150/392 (38%), Positives = 233/392 (59%), Gaps = 19/392 (4%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K K ++ S+ PQS A FG+ + KL +FLKS GV +FDT+ + +++E
Sbjct: 87 DASKYKVLVASICPQSLPFFAVKFGMEVTEAAHKLCSFLKSAGVHYVFDTNLASGFSILE 146
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
EFI RY++ + +LPM +S+CPGWI Y+E+ LGS + P+I + +SPQQ +
Sbjct: 147 CQKEFIQRYRRKH-----HDSHALPMFTSSCPGWIRYSERVLGSLVTPHICTARSPQQIM 201
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G +K C++ PD+IYH+ V PC+DKKLEA REDF L LE +V
Sbjct: 202 GCLVKDFFCKQQKLSPDKIYHMLVAPCFDKKLEAVREDFYNSL-----------LEARDV 250
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLT+GE+ L++ + V+ + L+ PLD +L + D + S G+ E VF++AA
Sbjct: 251 DCVLTSGEIFGLMEQRRVSVDELDSVPLDHVLGDSGDAVLMRHEGRVSEGFLEHVFKYAA 310
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LFG + + +K RN DF+EV LE +G+TLL+FA YGF+N+Q +V +++ + Y
Sbjct: 311 KELFGLDVH-EITYKNHRNRDFQEVTLERDGETLLQFAAVYGFRNIQTLVHRMRKGRVPY 369
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
Q VEV++CP GC++G GQ + G+ K LI+ +E +Y ++ + P P + +LY +W
Sbjct: 370 QLVEVLSCPGGCISGRGQAETMAGRLDKNLIQQMEEVY-SSLPVHLPEVTPALHTLYHDW 428
Query: 373 LEQPGSEKAKKHVHTEYHPVVKSITAQLH-NW 403
L+ S +A +HT+Y ++S T H W
Sbjct: 429 LQGQDSPQANMLLHTQYKSQIQSQTQPPHMQW 460
>gi|26345230|dbj|BAC36265.1| unnamed protein product [Mus musculus]
Length = 462
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 157/396 (39%), Positives = 233/396 (58%), Gaps = 29/396 (7%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +QS +FL +N K + +++S+ PQS A F +S ++L FLKS
Sbjct: 74 LSQQSAKDFLHVLNLNKRCDTSKHRVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKS 133
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT+ + D +++E+ EF+ RY Q E E LPML+SACPGW+ YAE+
Sbjct: 134 LGVHYVFDTTIAADFSILESQKEFVRRYHQHSEEQRE-----LPMLTSACPGWVRYAERV 188
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG I+PY+ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA RE
Sbjct: 189 LGRPIIPYLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVVVAPCYDKKLEALREGLST 248
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
L+ T D VLT+GE+ +++ ++ + + L + V + H
Sbjct: 249 TLNGARGT-----------DCVLTSGEIAQIMEQSDLSVKDIAVDTLFGDMKEVAVQRH- 296
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
GV SS G+ VFRHAAK LFG+ +E + ++ +RN DF EV LE G+ LL+FA Y
Sbjct: 297 DGV--SSDGHLAHVFRHAAKELFGEHVE-EITYRALRNKDFHEVTLEKNGEVLLRFAAAY 353
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+QN+++K+K K Y FVEV+ACP GCLNG GQ + + G + + L++ +E IY
Sbjct: 354 GFRNIQNMIQKLKKGKLPYHFVEVLACPRGCLNGRGQAQTEDGHTDRALLQQMEGIY-SG 412
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + P + V+ LY EWLE S K ++ +HT Y
Sbjct: 413 IPVRPPESSTHVQELYQEWLEGTESPKVQEVLHTSY 448
>gi|163954939|ref|NP_080548.3| nuclear prelamin A recognition factor [Mus musculus]
gi|81904446|sp|Q9CYQ7.1|NARF_MOUSE RecName: Full=Nuclear prelamin A recognition factor; AltName:
Full=Iron-only hydrogenase-like protein 2; Short=IOP2
gi|12850788|dbj|BAB28853.1| unnamed protein product [Mus musculus]
gi|16359251|gb|AAH16090.1| Nuclear prelamin A recognition factor [Mus musculus]
gi|26349103|dbj|BAC38191.1| unnamed protein product [Mus musculus]
gi|148702887|gb|EDL34834.1| nuclear prelamin A recognition factor [Mus musculus]
Length = 462
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 157/396 (39%), Positives = 233/396 (58%), Gaps = 29/396 (7%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +QS +FL +N K + +++S+ PQS A F +S ++L FLKS
Sbjct: 74 LSQQSAKDFLHVLNLNKRCDTSKHRVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKS 133
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT+ + D +++E+ EF+ RY Q E E LPML+SACPGW+ YAE+
Sbjct: 134 LGVHYVFDTTIAADFSILESQKEFVRRYHQHSEEQRE-----LPMLTSACPGWVRYAERV 188
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG I+PY+ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA RE
Sbjct: 189 LGRPIIPYLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVVVAPCYDKKLEALREGLST 248
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
L+ T D VLT+GE+ +++ ++ + + L + V + H
Sbjct: 249 TLNGARGT-----------DCVLTSGEIAQIMEQSDLSVKDIAVDTLFGDMKEVAVQRH- 296
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
GV SS G+ VFRHAAK LFG+ +E + ++ +RN DF EV LE G+ LL+FA Y
Sbjct: 297 DGV--SSDGHLAHVFRHAAKELFGEHVE-EITYRALRNKDFHEVTLEKNGEVLLRFAAAY 353
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+QN+++K+K K Y FVEV+ACP GCLNG GQ + + G + + L++ +E IY
Sbjct: 354 GFRNIQNMIQKLKKGKLPYHFVEVLACPRGCLNGRGQAQTEDGHTDRALLQQMEGIY-SG 412
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + P + V+ LY EWLE S K ++ +HT Y
Sbjct: 413 IPVRPPESSTHVQELYQEWLEGTESPKVQEVLHTSY 448
>gi|149758758|ref|XP_001490420.1| PREDICTED: nuclear prelamin A recognition factor [Equus caballus]
Length = 456
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 150/384 (39%), Positives = 230/384 (59%), Gaps = 25/384 (6%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
N ++ K + +S+ PQS A F +S ++L FLKSLGV +FDT+ + D +++E
Sbjct: 87 NTSEHKVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILE 146
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EF+ RY Q E + +LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +
Sbjct: 147 SQREFVRRYHQHSEGE-----PALPMLTSACPGWVRYAERVLGHPVTPHLCTAKSPQQIM 201
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ +K + ++ PD+I+HV V PCYDKKLEA R+DF L S
Sbjct: 202 GSLVKDYFARRQNLSPDKIFHVVVAPCYDKKLEALRDDFPSALRSSRGA----------- 250
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLT+GE++ +++ V +++++ +D + + +E SS G VFRHAA
Sbjct: 251 DCVLTSGEIVQIMEQSDV---SVKDAAVDTLFGDCKEEEVRRHGGASSDGCLVHVFRHAA 307
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LF + + G + ++T+RN DF+EV LE G+ LL+FA YGF+N+QN++ K+K K Y
Sbjct: 308 KELFNEDV-GEVTYRTLRNKDFQEVTLEKNGEVLLRFAAAYGFRNIQNVILKLKKGKSPY 366
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVEV+AC GCLNG GQ + + G++ K L++ +E IY +V + P + V+ LY EW
Sbjct: 367 HFVEVLACAGGCLNGRGQAQTEDGRADKALLRQMEGIYA-DVPVRAPEASARVQELYQEW 425
Query: 373 LEQPGSEKAKKHVHTEY----HPV 392
L+ S + ++ +HT Y HP
Sbjct: 426 LDGADSPRVQEALHTAYQGPGHPA 449
>gi|345806724|ref|XP_537935.3| PREDICTED: nuclear prelamin A recognition factor isoform 2 [Canis
lupus familiaris]
Length = 456
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 152/396 (38%), Positives = 239/396 (60%), Gaps = 29/396 (7%)
Query: 2 LEKQSLDEFLS--NINKG------KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
+ +Q++ +F N+NK K + +S+ PQS A F +S ++L FLKS
Sbjct: 68 VSQQNVKDFFRVLNLNKKCDPSQHKVLAVSVCPQSLPYFAAKFRLSVTDASRRLCGFLKS 127
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT+ + D +++E+ EF+ RY+Q E + +LPML+SACPGW+ YAE+
Sbjct: 128 LGVHYVFDTTIAADFSILESQKEFVRRYQQHSEEE-----PALPMLTSACPGWVRYAERV 182
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG + P++ + KSPQQ +G+ +K + ++ PD+I+HV V PCYDKKLEA REDF
Sbjct: 183 LGHPVTPHLCTAKSPQQIMGSLVKDYFARQQNLSPDKIFHVIVAPCYDKKLEALREDF-- 240
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
+ +R D VLT+GE+ +++ + ++++ +D + + +E
Sbjct: 241 --PTAPHGFR-------SADCVLTSGEIAQIMEQSDLT---VKDAAVDTVFGGLKEEEVR 288
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
SS GY VFRHAAK LF + + G + ++T+RN DF+EV LE G+ LL+FA Y
Sbjct: 289 RHDGASSDGYLAHVFRHAAKQLFDEDV-GEVTYRTLRNKDFQEVTLEKNGEVLLRFAAAY 347
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+QN+V K+K + Y FVEV+AC GCLNG GQ + + G++ K L++ +E IY +
Sbjct: 348 GFRNIQNVVLKLKKGRFPYHFVEVLACAGGCLNGRGQAQTEDGRADKALLRQMEGIYA-D 406
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + P + V+ LY EWL+ S +A++ +HT+Y
Sbjct: 407 IPVRPPESSAHVQELYQEWLDGADSPRAQEALHTKY 442
>gi|148236349|ref|NP_001085771.1| nuclear prelamin A recognition factor [Xenopus laevis]
gi|82184347|sp|Q6GP25.1|NARF_XENLA RecName: Full=Nuclear prelamin A recognition factor
gi|49118837|gb|AAH73323.1| MGC80731 protein [Xenopus laevis]
Length = 456
Score = 283 bits (724), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 149/376 (39%), Positives = 230/376 (61%), Gaps = 29/376 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K V+ S+SPQS A F +S + KKL FLKSLGV + DT+ + D +++E +F
Sbjct: 90 KLVVASISPQSVPYFAVKFHLSVCEASKKLCGFLKSLGVHHVLDTTIAADFSILETQKDF 149
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
I R+++ ++ DE + PM +SACPGW+ YAE+ LG + P+I + KSPQQ +G+ +K
Sbjct: 150 IQRFRR--QTQDEHA---FPMFASACPGWVQYAERVLGDSVTPHICTAKSPQQIMGSLVK 204
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+ PD+I+H+ V PCYD+KLEA RED+ +L +VD VLT
Sbjct: 205 GYFASSKNVSPDKIFHLMVAPCYDRKLEALREDYYTEL-----------YNCRDVDCVLT 253
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTN-----VDDEGHLYGVAGSSGGYAETVFRHAA 252
+GEV+ +++ + ++ + + E PL+ + V EG SS GY VFRHAA
Sbjct: 254 SGEVMQIMEQQNISVKEVMEFPLENLFGETSCVFVRHEG------TSSDGYLAHVFRHAA 307
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LF ++ + +K ++N DF EV+LE +G+T+L+FA YGF+N+QN+V K++ K Y
Sbjct: 308 KELFDMDVQ-EITYKALKNKDFLEVSLEKDGETVLRFAAAYGFRNIQNMVLKLRKGKFHY 366
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVEV+ACP GCLNG GQ + G+ + L+ +E +Y V + +P NP +++LY++W
Sbjct: 367 HFVEVLACPGGCLNGKGQAQTMDGKVERALLHEMEEVYT-RVPIQNPESNPHIQALYEDW 425
Query: 373 LEQPGSEKAKKHVHTE 388
L+ S+K K+ +HT+
Sbjct: 426 LQGAESQKTKQTLHTK 441
>gi|317419132|emb|CBN81169.1| Nuclear prelamin A recognition factor [Dicentrarchus labrax]
Length = 461
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 148/393 (37%), Positives = 234/393 (59%), Gaps = 20/393 (5%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+++K K ++ S+ PQS A FG+ + KL FLKSLGV+ +FDT+ + +++E
Sbjct: 87 DVSKHKVLVASICPQSLPFFAVKFGLDVTEAAHKLCGFLKSLGVQYVFDTTLAAGFSILE 146
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EFI RY++ ++PM +S+CPGWI Y+E+ LGS + P+I + +SPQQ +
Sbjct: 147 SQKEFIQRYRRRH-----HDTHAMPMFTSSCPGWIRYSERVLGSLVTPHICTARSPQQIM 201
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G +K + ++ P+++YHV V PC+DKKLEA RE+F L LE +V
Sbjct: 202 GCLVKDYFSKQQKLSPEKVYHVLVAPCFDKKLEAVREEFYNSL-----------LETRDV 250
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLT+GE+ L++ + V+ E + PLD +L D + S G+ E +F+HAA
Sbjct: 251 DCVLTSGEIYCLMEQRKVSVEGPDSVPLDHVLGEAGDVALVRHEGRGSEGFLEHIFKHAA 310
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LFG + + +K +RN DF+EV LE +G+TLL+FA YGF+N+Q +V +++ + Y
Sbjct: 311 KELFGLDVH-EITYKNLRNRDFQEVTLERDGETLLQFAAVYGFRNIQTLVHRMRKGRVPY 369
Query: 313 QFVEVMACPSGCLNGGGQIKPKP-GQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDE 371
Q VEV++CP GCL+G GQ + + G+ K L++ +E Y ++ + P NP + +LY +
Sbjct: 370 QLVEVLSCPGGCLSGRGQAESEAGGRVDKALVQQMEEAY-SSLPVRLPEVNPALHTLYQD 428
Query: 372 WLEQPGSEKAKKHVHTEYHPVVKSITAQLH-NW 403
WL+ S +A +HT+Y +S T H W
Sbjct: 429 WLQGQDSSQASALLHTQYRNQTQSHTQPPHMQW 461
>gi|354469091|ref|XP_003496964.1| PREDICTED: nuclear prelamin A recognition factor-like isoform 1
[Cricetulus griseus]
Length = 457
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 152/397 (38%), Positives = 235/397 (59%), Gaps = 30/397 (7%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +QS +F +N K + +++S+ PQS A F +S ++L FLKS
Sbjct: 68 LSQQSAKDFFHVLNLNKKCDTSKHRVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKS 127
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT+ + D +++E+ EF+ RY + E E LPML+SACPGW+ YAE+
Sbjct: 128 LGVHYVFDTTIAADFSILESQKEFVRRYHRHSEEQRE-----LPMLTSACPGWVRYAERV 182
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG ++P++ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA RE
Sbjct: 183 LGRPVIPHLCTAKSPQQIMGSLVKDYFARQQNLSPEKIFHVVVAPCYDKKLEALREGLST 242
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
L+ T D VLT+GE+ +++ + +++++ +D + +V +E +
Sbjct: 243 TLNGARGT-----------DCVLTSGEIAQIMEQSDL---SVKDTAVDTLFGDVKEEVAV 288
Query: 234 YGVAG-SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALC 292
+ G SS G+ VFRHAAK LFG+ IE + ++ +RN DF EV LE G+ LL+FA
Sbjct: 289 WRHDGVSSDGHLAHVFRHAAKELFGEHIE-EINYRALRNKDFHEVTLEKNGEVLLRFAAA 347
Query: 293 YGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE 352
YGF+N+QN++ K+K K Y FVEV+ACP GCLNG GQ + + G + + L++ +E IY
Sbjct: 348 YGFRNIQNMILKLKKGKFPYHFVEVLACPRGCLNGRGQAQTEDGHTDRALLQQMEGIY-S 406
Query: 353 NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + P + V LY +WLE S K ++ +HT Y
Sbjct: 407 GIPVRPPESSAHVEELYQQWLEGTESPKVQEVLHTTY 443
>gi|189526438|ref|XP_001923641.1| PREDICTED: nuclear prelamin A recognition factor-like [Danio rerio]
Length = 465
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 144/396 (36%), Positives = 241/396 (60%), Gaps = 26/396 (6%)
Query: 2 LEKQSLDEF--------LSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
+ +Q+LDE + +K K +++S+ PQS A F + +KL FLKS
Sbjct: 71 ISQQNLDEINHVLALNKKCDTSKHKILVVSVCPQSVPFFAVKFQLDVSAAAQKLCGFLKS 130
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
+GV +FDT+ + +++E+ EF+ RY++ + ++PM +S+CPGWI YAE+
Sbjct: 131 VGVHYVFDTTIAASFSILESQREFVQRYRRKHHDAN-----AMPMFTSSCPGWIRYAERV 185
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LGS + P+I + +SPQQ +G+ +K+ ++ P++++HV V PC+DKKLEA R++F
Sbjct: 186 LGSVVTPHICTARSPQQIMGSLVKNFFARQQKLTPEQVFHVVVAPCFDKKLEAVRDEFYN 245
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
+ LE +VD VLT+GE+L L++ V E ++ +PLD ++ + D G
Sbjct: 246 SI-----------LESRDVDCVLTSGEILHLMEQSKVTVEEVDSAPLDHVIGEISDSGLT 294
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
S G+ E +F+HAAK +FG ++ + +KT+RN DF+EVALE +G+TLL+FA Y
Sbjct: 295 RHEGRGSEGFLEHIFKHAAKEIFGLDVQD-IVYKTLRNRDFQEVALERDGETLLQFAAVY 353
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+Q +V +++ K YQ +EV++CP GCL+G GQ + + G+ + L++ +E Y +
Sbjct: 354 GFRNIQTLVHRMRKGKVPYQLIEVLSCPGGCLSGRGQAEGEGGRPDRTLVQQMEEHY-SS 412
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + P N V+ LY +WL+ S A++ +HT+Y
Sbjct: 413 LPVRLPETNLEVQRLYQDWLDGHDSPHAQQSLHTQY 448
>gi|410982054|ref|XP_003997377.1| PREDICTED: nuclear prelamin A recognition factor [Felis catus]
Length = 456
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 146/378 (38%), Positives = 229/378 (60%), Gaps = 21/378 (5%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ ++ K +++S+ PQS A F +S ++L FLKSLGV +FDT+ + D +++E
Sbjct: 87 DTSQHKVLVVSVCPQSLPYFAAKFRLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSVLE 146
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EF+ R++Q E + +LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +
Sbjct: 147 SQKEFVRRFRQHSEEE-----PALPMLTSACPGWVRYAERVLGHPVTPHLCTAKSPQQIM 201
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ +K + ++ PD+I+HV V PCYD+KLEA RED L
Sbjct: 202 GSLVKDYFARRQNLSPDKIFHVIVAPCYDRKLEALREDVPTALHGSRGA----------- 250
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLT+GEV+ +++ + A++++ +D + + +E SS GY VFRHAA
Sbjct: 251 DCVLTSGEVVQIMEQSDL---AVKDAAVDTLFGGLKEEEVRRHDGASSDGYLAHVFRHAA 307
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LF + + G + ++T+RN DF+EV LE G+ LL+FA YGF+N+QN+V K+K + Y
Sbjct: 308 KQLFDEDV-GEVTYRTLRNKDFQEVTLEKNGEVLLRFAAAYGFRNIQNVVLKLKKGRFPY 366
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVEV+AC GCLNG GQ + + G++ K L++ +E Y +V + P + V+ LY EW
Sbjct: 367 HFVEVLACAGGCLNGRGQAQAEDGRADKALLRQMEGKY-ADVPVRPPETSAHVQELYREW 425
Query: 373 LEQPGSEKAKKHVHTEYH 390
L+ S + ++ +HT YH
Sbjct: 426 LDGADSPRVREALHTVYH 443
>gi|85861200|ref|NP_001034296.1| nuclear prelamin A recognition factor [Rattus norvegicus]
gi|123779921|sp|Q2YDU6.1|NARF_RAT RecName: Full=Nuclear prelamin A recognition factor; AltName:
Full=Iron-only hydrogenase-like protein 2; Short=IOP2
gi|82414782|gb|AAI10051.1| Nuclear prelamin A recognition factor [Rattus norvegicus]
Length = 456
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 153/396 (38%), Positives = 231/396 (58%), Gaps = 29/396 (7%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +QS +F +N K K +++S+ PQS A F +S ++L FLKS
Sbjct: 68 LSQQSAKDFFHVLNLNKRCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKS 127
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT+ + D +++E+ EF+ RY Q E E LPML+SACPGW+ YAE+
Sbjct: 128 LGVHYVFDTTIAADFSILESQKEFVRRYHQHSEEQRE-----LPMLTSACPGWVRYAERV 182
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG I+PY+ + KSPQQ +G+ +K + ++ P++I+H+ V PCYDKKLEA RE
Sbjct: 183 LGRPIIPYLCTAKSPQQVMGSLVKDYFARQQSLAPEKIFHIVVAPCYDKKLEALREGLSP 242
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
L+ T D VLT+GE+ +++ + ++++ +D + +V +
Sbjct: 243 TLNGARGT-----------DCVLTSGEIAQIMEQSDL---SVKDIAVDTLFGDVKEMAVR 288
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
SS G+ VFRHAAK LFG+ +E + ++ +RN DF EV LE G+ LL+FA Y
Sbjct: 289 RHDGVSSDGHLAHVFRHAAKELFGEHVE-EITYRALRNKDFHEVTLEKNGEVLLRFAAAY 347
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+QN++ K+K K Y FVEV+ACP GCLNG GQ + + G + + L++ +E IY
Sbjct: 348 GFRNIQNMIMKLKKGKFPYHFVEVLACPRGCLNGRGQAQTEDGHTDRALLQQMEGIY-SG 406
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + P + V+ LY EWLE S K ++ +HT Y
Sbjct: 407 IPVWPPESSTHVQELYQEWLEGTESPKVQEVLHTSY 442
>gi|345806726|ref|XP_003435490.1| PREDICTED: nuclear prelamin A recognition factor isoform 1 [Canis
lupus familiaris]
Length = 408
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 147/372 (39%), Positives = 228/372 (61%), Gaps = 21/372 (5%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K + +S+ PQS A F +S ++L FLKSLGV +FDT+ + D +++E+ EF
Sbjct: 44 KVLAVSVCPQSLPYFAAKFRLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEF 103
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ RY+Q E + +LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +G+ +K
Sbjct: 104 VRRYQQHSEEE-----PALPMLTSACPGWVRYAERVLGHPVTPHLCTAKSPQQIMGSLVK 158
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+ ++ PD+I+HV V PCYDKKLEA REDF + +R D VLT
Sbjct: 159 DYFARQQNLSPDKIFHVIVAPCYDKKLEALREDF----PTAPHGFR-------SADCVLT 207
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
+GE+ +++ + ++++ +D + + +E SS GY VFRHAAK LF
Sbjct: 208 SGEIAQIMEQSDLT---VKDAAVDTVFGGLKEEEVRRHDGASSDGYLAHVFRHAAKQLFD 264
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+ + G + ++T+RN DF+EV LE G+ LL+FA YGF+N+QN+V K+K + Y FVEV
Sbjct: 265 EDV-GEVTYRTLRNKDFQEVTLEKNGEVLLRFAAAYGFRNIQNVVLKLKKGRFPYHFVEV 323
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
+AC GCLNG GQ + + G++ K L++ +E IY ++ + P + V+ LY EWL+
Sbjct: 324 LACAGGCLNGRGQAQTEDGRADKALLRQMEGIYA-DIPVRPPESSAHVQELYQEWLDGAD 382
Query: 378 SEKAKKHVHTEY 389
S +A++ +HT+Y
Sbjct: 383 SPRAQEALHTKY 394
>gi|428162681|gb|EKX31801.1| hypothetical protein GUITHDRAFT_149054 [Guillardia theta CCMP2712]
Length = 485
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 167/432 (38%), Positives = 247/432 (57%), Gaps = 78/432 (18%)
Query: 1 MLEKQSLDEFLSNI-NKGK--AVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVK 57
++ +QS+DEFLS + NK +++S+SPQ+ AS+A + IS +++T K LG
Sbjct: 67 LITQQSVDEFLSVVENKLNDIKIVVSVSPQAWASVATQYNISGPSALARISTVFKQLGAI 126
Query: 58 SI-------FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYA 110
S+ D S RDL+L+E+C EF+ R +++ P+++SACPGW+CYA
Sbjct: 127 SVSSMNVAVLDISLFRDLSLVESCQEFVHRLTAERKT---------PVIASACPGWVCYA 177
Query: 111 EKQLGSYILPYISSVKSPQQ--TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAR 168
EK S LP++SSVKSPQQ G +K ++LG +P IYHV +MPC+DKKLEA+R
Sbjct: 178 EKTQHSA-LPFLSSVKSPQQISAAGTLVKQMFARRLGVKPSSIYHVCLMPCFDKKLEASR 236
Query: 169 EDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVD 228
+DF+ Q DS EVD VLT+ E+LDL+ K +NF ++E ++ +
Sbjct: 237 DDFIEQ-DSNSR----------EVDLVLTSAEILDLLARKGINFLEVQEGSIENVFGETM 285
Query: 229 DE----GHLYGVAGSSGGYAETVFRHAAKTLFGK---------VIEGHLE---------- 265
+ +L+GV GSSG +A+ VF HAA+ +FGK +E +E
Sbjct: 286 SQQAVTNNLFGVHGSSGNFAKEVFVHAARQIFGKDVRVTEASDDVEMQIEDPSSSSSSSS 345
Query: 266 ----------------FKTIRNSDFREVAL--EVEGKT-LLKFALCYGFQNLQNIVRKVK 306
+K +RNSDF E+ L + + KT LLKFA CYGF+N+QNI+R++K
Sbjct: 346 SSSSSSSSSSPPINCVWKQVRNSDFHELVLFDQRDNKTPLLKFARCYGFRNIQNIIRQIK 405
Query: 307 MRK-CDYQFVEVMACPSGCLNGGGQIKPKPG--QSPKELIKTLETIYLENVMLADPFKNP 363
K C Y ++EVMACPSGC+NGGGQI+P ++PKE + ++ + P +NP
Sbjct: 406 SSKGCAYHYIEVMACPSGCVNGGGQIRPDESTKEAPKERLLRVQETFRNGQSERPPHENP 465
Query: 364 LVRSLYDEWLEQ 375
V+ +Y E +Q
Sbjct: 466 DVKRIYQEVKQQ 477
>gi|193669298|ref|XP_001943301.1| PREDICTED: probable cytosolic Fe-S cluster assembly factor
AAEL012261-like [Acyrthosiphon pisum]
Length = 477
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 161/402 (40%), Positives = 237/402 (58%), Gaps = 27/402 (6%)
Query: 1 MLEKQSLDEFL------SNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL 54
++++QS DE + + ++ K +++S+S QS S+A IS KL + K L
Sbjct: 86 LVQQQSTDEMMRVFDAQNGLDNKKFIVVSISIQSCVSIATSKNISVECAASKLCGYFKKL 145
Query: 55 GVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQL 114
G + D + DL L+E+ NEFI RYK ++ S ++ LPML+S+CPGW+CYAEK
Sbjct: 146 GADLVLDIKLAEDLALLESQNEFIERYKSAKASKVQKI---LPMLASSCPGWVCYAEKTH 202
Query: 115 GSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQ 174
G++ILPYIS VKSPQQ +G+ IK + +IYH+TVMPC+DKKLEA+R+ F F
Sbjct: 203 GNFILPYISRVKSPQQIMGSFIKDFVSNLRNKPRTDIYHLTVMPCFDKKLEASRDQF-FD 261
Query: 175 LDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGH-- 232
+D+ E +VD V+T+ EV L+ + +NF + D + N+ ++ H
Sbjct: 262 VDT----------ETKDVDCVITSIEVDALLVKQDINFNDIVPENFDTGMNNITEDNHNL 311
Query: 233 LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALC 292
SGGYA +F +AAK LF I+ +EFK +RN D +E LEV G +L+FA+
Sbjct: 312 FTSSGSGSGGYAHHIFCNAAKELFNINID-KVEFKPLRNVDMKEATLEVNGVVVLRFAIA 370
Query: 293 YGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE 352
GF+N+QN+V+K+K ++C Y +VEVMACPSGCLNGG Q+K +S +E I LE Y E
Sbjct: 371 NGFRNIQNLVQKLKSKRCPYDYVEVMACPSGCLNGGAQVKQMEIKSNREFINALENTYNE 430
Query: 353 NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVK 394
+ +P +N V+ LY WL + ++ T Y + K
Sbjct: 431 -LPKRNPTQNNSVKYLYSNWLNE---NNKNDYLFTTYREIKK 468
>gi|432952174|ref|XP_004084989.1| PREDICTED: nuclear prelamin A recognition factor-like [Oryzias
latipes]
Length = 454
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 144/377 (38%), Positives = 231/377 (61%), Gaps = 19/377 (5%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K + ++ S+ PQS A FG+ + +KL FLKS+GV+ +FDT+ + +++E
Sbjct: 84 DASKHRVLVASVCPQSLPFFAVKFGVDVPEAGQKLCGFLKSIGVQFVFDTTLAAGFSILE 143
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
EFI RY++ +LP+ +S+CPGWI YAE+ LGS + P+I + +SPQQ +
Sbjct: 144 TQKEFIQRYRRRHHDP-----HALPLFTSSCPGWIRYAERVLGSLVTPHICTARSPQQIM 198
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G +K CQ+ P++++HV + PC+DKKLEA RE+F L +E +V
Sbjct: 199 GCLVKDFFCQQQKLSPEKVFHVVLAPCFDKKLEAVREEFYSSL-----------METRDV 247
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLT+ E+ L++ + V+ E L+ PLD++L D S G+ E VF+HAA
Sbjct: 248 DCVLTSKEIYRLMEQRKVSVEELDSVPLDQVLGEAADAALTRHDGRGSEGFLEHVFKHAA 307
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LFG ++ + +KT+RN DF+EV LE +G+TLL+FA YGF+N+Q +V +++ + Y
Sbjct: 308 KELFGLDVQ-EVTYKTLRNRDFQEVTLERDGETLLQFAAVYGFRNIQTLVHRMRKGRVPY 366
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
Q VEV++CP GCL+G GQ + + G+ + L++ +E +Y ++ + P NP ++ LY +W
Sbjct: 367 QLVEVLSCPGGCLSGRGQSE-EAGRVDRALVQQMEEVY-SSLPVRLPELNPALKVLYQDW 424
Query: 373 LEQPGSEKAKKHVHTEY 389
L+ S + K +HTEY
Sbjct: 425 LQGQDSLQTSKLLHTEY 441
>gi|432119127|gb|ELK38347.1| Nuclear prelamin A recognition factor [Myotis davidii]
Length = 433
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 153/410 (37%), Positives = 240/410 (58%), Gaps = 29/410 (7%)
Query: 2 LEKQSLDEFLS--NINKG------KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
+ +Q+ +F N+NK K + +S+ PQS A F +S ++L FLKS
Sbjct: 45 VSQQNAKDFFRVLNLNKKCDASQHKVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKS 104
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FD + + D +++E+ EF+ RY+Q +E + LPML+SACPGW+ YAE+
Sbjct: 105 LGVHYVFDMTIAADFSILESQKEFVRRYRQHREEE-----PRLPMLTSACPGWVRYAERV 159
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG I P++ + KSPQQ +G+ +K + ++ PD+++HV V PCYDKKLEA RED
Sbjct: 160 LGHPITPHLCTAKSPQQIMGSLVKDYFARRQNLSPDKVFHVIVAPCYDKKLEALREDVPT 219
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
L S D VLT+GE++ L++ ++ +++ +D + +V +E
Sbjct: 220 PLQSSRGA-----------DCVLTSGEIVQLMEQSDLS---PDDALVDTLFGDVKEEEVR 265
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
SS GY +FRHAAK LF + + G L ++++RN DF+EV LE +G+ LL+FA Y
Sbjct: 266 RHEGASSDGYLAHIFRHAAKELFNEDV-GELTYRSLRNKDFQEVTLERDGEVLLRFAAAY 324
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+QN+V K+K K Y FVEV+AC GCL+G GQ + + G++ + L++ +E IY
Sbjct: 325 GFRNIQNVVLKLKRGKFPYHFVEVLACAGGCLSGRGQAQAEDGRADRALLRQMEGIY-AA 383
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
+ + P + V+ LY EWL S +A+ +HT Y +S +++ W
Sbjct: 384 IPVRPPETSAHVQELYQEWLGGADSPRAQAALHTAYQGPGQSASSRDIKW 433
>gi|149055127|gb|EDM06944.1| rCG33233 [Rattus norvegicus]
Length = 408
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 149/382 (39%), Positives = 227/382 (59%), Gaps = 21/382 (5%)
Query: 8 DEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRD 67
+E + +K K +++S+ PQS A F +S ++L FLKSLGV +FDT+ + D
Sbjct: 34 NEERCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAAD 93
Query: 68 LTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKS 127
+++E+ EF+ RY Q E E LPML+SACPGW+ YAE+ LG I+PY+ + KS
Sbjct: 94 FSILESQKEFVRRYHQHSEEQRE-----LPMLTSACPGWVRYAERVLGRPIIPYLCTAKS 148
Query: 128 PQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGL 187
PQQ +G+ +K + ++ P++I+H+ V PCYDKKLEA RE L+ T
Sbjct: 149 PQQVMGSLVKDYFARQQSLAPEKIFHIVVAPCYDKKLEALREGLSPTLNGARGT------ 202
Query: 188 EIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETV 247
D VLT+GE+ +++ + ++++ +D + +V + SS G+ V
Sbjct: 203 -----DCVLTSGEIAQIMEQSDL---SVKDIAVDTLFGDVKEMAVRRHDGVSSDGHLAHV 254
Query: 248 FRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKM 307
FRHAAK LFG+ +E + ++ +RN DF EV LE G+ LL+FA YGF+N+QN++ K+K
Sbjct: 255 FRHAAKELFGEHVE-EITYRALRNKDFHEVTLEKNGEVLLRFAAAYGFRNIQNMIMKLKK 313
Query: 308 RKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRS 367
K Y FVEV+ACP GCLNG GQ + + G + + L++ +E IY + + P + V+
Sbjct: 314 GKFPYHFVEVLACPRGCLNGRGQAQTEDGHTDRALLQQMEGIY-SGIPVWPPESSTHVQE 372
Query: 368 LYDEWLEQPGSEKAKKHVHTEY 389
LY EWLE S K ++ +HT Y
Sbjct: 373 LYQEWLEGTESPKVQEVLHTSY 394
>gi|354469093|ref|XP_003496965.1| PREDICTED: nuclear prelamin A recognition factor-like isoform 2
[Cricetulus griseus]
Length = 409
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 147/378 (38%), Positives = 229/378 (60%), Gaps = 22/378 (5%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K + +++S+ PQS A F +S ++L FLKSLGV +FDT+ + D +++E
Sbjct: 39 DTSKHRVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILE 98
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EF+ RY + E E LPML+SACPGW+ YAE+ LG ++P++ + KSPQQ +
Sbjct: 99 SQKEFVRRYHRHSEEQRE-----LPMLTSACPGWVRYAERVLGRPVIPHLCTAKSPQQIM 153
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ +K + ++ P++I+HV V PCYDKKLEA RE L+ T
Sbjct: 154 GSLVKDYFARQQNLSPEKIFHVVVAPCYDKKLEALREGLSTTLNGARGT----------- 202
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG-SSGGYAETVFRHA 251
D VLT+GE+ +++ + +++++ +D + +V +E ++ G SS G+ VFRHA
Sbjct: 203 DCVLTSGEIAQIMEQSDL---SVKDTAVDTLFGDVKEEVAVWRHDGVSSDGHLAHVFRHA 259
Query: 252 AKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
AK LFG+ IE + ++ +RN DF EV LE G+ LL+FA YGF+N+QN++ K+K K
Sbjct: 260 AKELFGEHIE-EINYRALRNKDFHEVTLEKNGEVLLRFAAAYGFRNIQNMILKLKKGKFP 318
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDE 371
Y FVEV+ACP GCLNG GQ + + G + + L++ +E IY + + P + V LY +
Sbjct: 319 YHFVEVLACPRGCLNGRGQAQTEDGHTDRALLQQMEGIY-SGIPVRPPESSAHVEELYQQ 377
Query: 372 WLEQPGSEKAKKHVHTEY 389
WLE S K ++ +HT Y
Sbjct: 378 WLEGTESPKVQEVLHTTY 395
>gi|198416311|ref|XP_002131190.1| PREDICTED: similar to Nuclear prelamin A recognition factor-like
protein (Iron-only hydrogenase-like protein 1) (IOP1)
[Ciona intestinalis]
Length = 478
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 168/416 (40%), Positives = 240/416 (57%), Gaps = 36/416 (8%)
Query: 1 MLEKQSLDEFL--------SNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLK 52
++ QS DEF ++ K K +++S+SPQSRAS+A + + K + F K
Sbjct: 86 LIAMQSKDEFYKVLKENKETSPEKRKIIVVSVSPQSRASIAAKHKLDVRKAGKAIDAFFK 145
Query: 53 SLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEK 112
SLG + DT+ + ++ L++ EFI RY+ D +S SLP+L+S+CPGWICYAEK
Sbjct: 146 SLGADIVLDTTFAEEIALVKTAEEFIQRYR------DNQSKKSLPVLTSSCPGWICYAEK 199
Query: 113 QLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFV 172
G LPYISSVKSPQQ +G+ +K + + PD +YHVTVMPCYDKKLEA+R+DF
Sbjct: 200 THGDLTLPYISSVKSPQQILGSLVKETVSSHVNKTPDNVYHVTVMPCYDKKLEASRQDFY 259
Query: 173 FQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGH 232
D+ +VD VLT+GEV ++I + + L P +D +
Sbjct: 260 -----------DDIYSTRDVDLVLTSGEVEEMIAGECGTMDDLSIIPPQLKAARLDTDEP 308
Query: 233 LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVAL-EVEGKTLLKFA 290
L G SGGY V++HAA+ LFG +E + +K RN+ DFR+V L + +GK LL FA
Sbjct: 309 LSHGGGGSGGYLHHVYKHAAQQLFGVKVE-EVVYKPARNNKDFRDVTLKDADGKILLNFA 367
Query: 291 LCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP--KELIKTLET 348
YGF+++QN+V+K+K +C+Y FVEVMACPSGCLNGGGQIK G K++ +++
Sbjct: 368 SVYGFRSIQNLVQKMKRGRCNYHFVEVMACPSGCLNGGGQIKAPGGDRELQKDIFSSVQI 427
Query: 349 IYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLH-NW 403
+ E P S ++ + K+K+ HT+YH V K T L+ W
Sbjct: 428 AFNEI-----PPTEAREDSAVNQTIMDYDITKSKQLFHTQYHAVEKDETLSLNVKW 478
>gi|426238303|ref|XP_004013094.1| PREDICTED: nuclear prelamin A recognition factor isoform 2 [Ovis
aries]
Length = 408
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 145/378 (38%), Positives = 225/378 (59%), Gaps = 21/378 (5%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K + + +S+ PQS A F +S ++L FLKSLGV +FDT+ + D +++E
Sbjct: 39 DTSKHRVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILE 98
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EF+ R++Q E + +LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +
Sbjct: 99 SQKEFVRRFRQHNEEE-----PALPMLTSACPGWVRYAERVLGHPVTPHLCTAKSPQQIM 153
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ +K + ++ PD+I+HV V PCYDKKLEA +ED + T
Sbjct: 154 GSLVKDYFARRQNLSPDKIFHVIVAPCYDKKLEALQEDVLTASRGSRGT----------- 202
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLT+GE+ +++ V ++ E+ LD + NV +E S GY +FRHAA
Sbjct: 203 DCVLTSGEIAQMMEQSDV---SVREAALDTLFGNVKEEELRRHDGAGSDGYLAHIFRHAA 259
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LF + + G + ++ +RN DF+EV LE G+ LL+FA YGF+N+QN+V K+K K Y
Sbjct: 260 KELFNEDV-GEVTYRALRNKDFQEVTLEKSGEVLLRFAAAYGFRNIQNVVLKLKKGKFPY 318
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVEV+AC GCLNG GQ + G++ K L++ ++ IY ++ + P + V+ LY EW
Sbjct: 319 HFVEVLACAGGCLNGRGQAQTADGRTDKALLQKMKGIYA-DIPVQLPEASTHVQELYQEW 377
Query: 373 LEQPGSEKAKKHVHTEYH 390
L+ S + ++ +HT Y
Sbjct: 378 LDGTDSPRVQEALHTAYQ 395
>gi|426238301|ref|XP_004013093.1| PREDICTED: nuclear prelamin A recognition factor isoform 1 [Ovis
aries]
Length = 456
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 145/378 (38%), Positives = 225/378 (59%), Gaps = 21/378 (5%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K + + +S+ PQS A F +S ++L FLKSLGV +FDT+ + D +++E
Sbjct: 87 DTSKHRVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILE 146
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EF+ R++Q E + +LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +
Sbjct: 147 SQKEFVRRFRQHNEEE-----PALPMLTSACPGWVRYAERVLGHPVTPHLCTAKSPQQIM 201
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ +K + ++ PD+I+HV V PCYDKKLEA +ED + T
Sbjct: 202 GSLVKDYFARRQNLSPDKIFHVIVAPCYDKKLEALQEDVLTASRGSRGT----------- 250
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLT+GE+ +++ V ++ E+ LD + NV +E S GY +FRHAA
Sbjct: 251 DCVLTSGEIAQMMEQSDV---SVREAALDTLFGNVKEEELRRHDGAGSDGYLAHIFRHAA 307
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LF + + G + ++ +RN DF+EV LE G+ LL+FA YGF+N+QN+V K+K K Y
Sbjct: 308 KELFNEDV-GEVTYRALRNKDFQEVTLEKSGEVLLRFAAAYGFRNIQNVVLKLKKGKFPY 366
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVEV+AC GCLNG GQ + G++ K L++ ++ IY ++ + P + V+ LY EW
Sbjct: 367 HFVEVLACAGGCLNGRGQAQTADGRTDKALLQKMKGIYA-DIPVQLPEASTHVQELYQEW 425
Query: 373 LEQPGSEKAKKHVHTEYH 390
L+ S + ++ +HT Y
Sbjct: 426 LDGTDSPRVQEALHTAYQ 443
>gi|440895967|gb|ELR48019.1| Nuclear prelamin A recognition factor [Bos grunniens mutus]
Length = 454
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/397 (38%), Positives = 232/397 (58%), Gaps = 29/397 (7%)
Query: 2 LEKQSLDEFLS--NINKG------KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
+ +Q+ +F N+NK K + +SL PQS A F +S ++L FLKS
Sbjct: 66 VSQQNAKDFFQVLNLNKKCDTSEHKVLAVSLCPQSLPYFAAKFSLSVTDASRRLCGFLKS 125
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT+ + D +++E+ EF+ R++Q E + +LPML+SACPGW+ YAE+
Sbjct: 126 LGVHYVFDTTIAADFSILESQKEFVRRFRQHNEEE-----PALPMLTSACPGWVRYAERV 180
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG + P++ + KSPQQ +G+ +K + ++ PD+I+HV V PCYDKKLEA +ED +
Sbjct: 181 LGHPVTPHLCTAKSPQQIMGSLVKDYFARRQNLSPDKIFHVIVAPCYDKKLEALQEDVLT 240
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
T D VLT+GEV +++ V ++ E+ LD + +V +E
Sbjct: 241 ASRGSRGT-----------DCVLTSGEVAQMMEQSDV---SVREAALDTLFGDVKEEELR 286
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
S GY +FRHAAK LF + + G + ++ +RN DF+EV LE G+ LL+FA Y
Sbjct: 287 RHDGAGSDGYLAHIFRHAAKELFNEDV-GEVTYRALRNKDFQEVTLEKSGEVLLRFAAAY 345
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+QN+V K+K K Y FVEV+AC GCLNG GQ + G++ K L++ ++ IY +
Sbjct: 346 GFRNIQNVVLKLKKGKFPYHFVEVLACAGGCLNGRGQAQTADGRTDKALLQKMKGIY-AD 404
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
+ + P + V+ LY EWL+ S + ++ +HT Y
Sbjct: 405 IPVQLPEASTHVQELYQEWLDGTDSPRVQEALHTAYQ 441
>gi|126309437|ref|XP_001368190.1| PREDICTED: nuclear prelamin A recognition factor [Monodelphis
domestica]
Length = 456
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 152/394 (38%), Positives = 235/394 (59%), Gaps = 29/394 (7%)
Query: 4 KQSLDEFLS--NINKG------KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLG 55
+Q+ EF N+NK K + +S+ PQS A F +S K+L FLKSLG
Sbjct: 70 QQNQKEFFRILNLNKKCDSSHHKVLAVSICPQSLPYFAAKFNLSITDASKRLCGFLKSLG 129
Query: 56 VKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLG 115
V +FD++ + D +++E+ EF+ RY+Q + + SLPM +SACPGWI YAE+ LG
Sbjct: 130 VHYVFDSAIAADFSILESQKEFVYRYRQQNQKE-----HSLPMFASACPGWIRYAERVLG 184
Query: 116 SYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL 175
+ + P+I + KSPQQ +G+ +K + ++ P +I+H+ V PCYDKKLEA REDF
Sbjct: 185 NPVTPHICTAKSPQQIMGSLVKDYFARQQNLSPAKIFHIIVAPCYDKKLEALREDFY--- 241
Query: 176 DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG 235
+Y +VD VLT+GE++ +++ K E ++E+ +D + + + +
Sbjct: 242 ---TASYNSH-----DVDCVLTSGEIIQIMEQKK---ELVKEAAVDNLFGEIKEGDIVQD 290
Query: 236 VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGF 295
S GY E +F++AAK LF I+ + +K ++N DF+E++LE G+ +L+FA YGF
Sbjct: 291 GRTRSDGYLEHIFKYAAKELFDMDIK-EITYKALKNKDFQEISLEKNGEIVLRFAAAYGF 349
Query: 296 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM 355
+N+QN+V K+K K Y FVEV+ACP GCLNG GQ + + G+ K L++ +E +Y E +
Sbjct: 350 RNIQNMVLKLKKGKFPYHFVEVLACPGGCLNGKGQTQTEDGKPDKALLRRMEEVYAE-IP 408
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ P N V+ LY EWL+ S K + +HT Y
Sbjct: 409 VQLPETNTHVQRLYQEWLDGIDSPKVLEALHTTY 442
>gi|301782119|ref|XP_002926478.1| PREDICTED: nuclear prelamin A recognition factor-like [Ailuropoda
melanoleuca]
Length = 456
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 146/392 (37%), Positives = 237/392 (60%), Gaps = 23/392 (5%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
++++ K + +S+ PQS A F +S ++L FLK LGV +FDT+ + +++E
Sbjct: 87 DVSQHKVLAVSVCPQSLPYFAAKFRLSVTDASRRLCGFLKGLGVHYVFDTAIAAGFSILE 146
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EF+ RY++ E + +LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +
Sbjct: 147 SQKEFVRRYQRHSEGE-----PALPMLTSACPGWVRYAERVLGHPVTPHLCTAKSPQQIM 201
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ +K + ++ PD+I+HV V PCYDKKLEA REDF ++ G
Sbjct: 202 GSLVKDYFARRQNLSPDKIFHVIVAPCYDKKLEALREDF------PTASHGSRG-----A 250
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLT+GE++ +++ + A++++ +D + + +E SS GY VFRHAA
Sbjct: 251 DCVLTSGEIIQIMEQSDL---AVKDAAVDTLFGGLKEEEVRRHDGASSDGYLAHVFRHAA 307
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LF + + G + ++T+RN DF+EV LE G+ LL+FA YGF+N+QN+V K+K + Y
Sbjct: 308 KQLFDEDV-GEVTYRTLRNKDFQEVTLEKNGEVLLRFAAAYGFRNIQNVVLKLKKGRFPY 366
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVEV+AC GCLNG GQ + + G + K L++ +E IY ++ + P + V+ LY EW
Sbjct: 367 HFVEVLACAGGCLNGRGQAQTEDGHADKALLRQMEGIY-ADIPVRPPETSAHVQELYQEW 425
Query: 373 LEQPGSEKAKKHVHTEYH-PVVKSITAQLHNW 403
L+ S + ++ +HT Y P +++++ + W
Sbjct: 426 LDGVDSPRVQEALHTMYQGPGLRAVSRDI-KW 456
>gi|431908622|gb|ELK12214.1| Nuclear prelamin A recognition factor [Pteropus alecto]
Length = 615
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 148/391 (37%), Positives = 234/391 (59%), Gaps = 21/391 (5%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K K + +S+ PQS A F +S ++L FLKSLGV +FD + + DL+++E
Sbjct: 246 DTSKHKVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKSLGVHYVFDAAVAADLSILE 305
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
EF+ R+ + E + +LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +
Sbjct: 306 GQKEFVRRFLRHSEEE-----PALPMLTSACPGWVRYAERVLGQPLTPHLCTAKSPQQIM 360
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ +K + ++ PD+I+HV V PCYDKKLEA REDF L S YR
Sbjct: 361 GSLVKDYFARRQNLPPDKIFHVIVAPCYDKKLEALREDFSPALHS----YRG-------A 409
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLT+GEV+ +++ ++ ++ +D + ++ +E SS G+ +FRHAA
Sbjct: 410 DCVLTSGEVVQMMEQSDLSG---RDAAVDTLFGDLREEELRRHDGASSDGHLAHIFRHAA 466
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LF + + G + ++T+RN DF+EV LE +G+ LL+FA YGF+N+QN+V K+K K Y
Sbjct: 467 KELFNEDV-GEVTYRTLRNKDFQEVTLERDGEVLLRFAAAYGFRNIQNVVLKLKRGKFPY 525
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVEV+AC GCLNG GQ + G++ + L++ +E IY ++ + P + V++LY EW
Sbjct: 526 HFVEVLACAGGCLNGRGQALAEDGRADRALLRQMEGIYT-SIPVRAPEASASVQALYQEW 584
Query: 373 LEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
L S +A++ +H Y + +++ W
Sbjct: 585 LGGADSPRAQEALHMAYQGPGRPASSRDIKW 615
>gi|345326494|ref|XP_001513248.2| PREDICTED: nuclear prelamin A recognition factor [Ornithorhynchus
anatinus]
Length = 457
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 149/379 (39%), Positives = 228/379 (60%), Gaps = 22/379 (5%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K K + S+ PQS A F + ++L FLKSLGV +FDT+ + D +++E
Sbjct: 85 DTSKHKVLAASICPQSLPYFAAKFNLCVTDTSRRLCGFLKSLGVHYVFDTTIAADFSILE 144
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EF+ RY++ E+ +LPML+SACPGW+ YAE+ L + + +I + KSPQQ +
Sbjct: 145 SQKEFVQRYRRR-----EQEEHALPMLTSACPGWVRYAERVLANPVTLHICTAKSPQQIM 199
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL-DSQEETYRDEGLEIPE 191
G+ +K + ++ PD+I+H+ V PCYDKKLEA REDF L DSQ +
Sbjct: 200 GSLVKDYFARQKNLSPDKIFHIIVAPCYDKKLEALREDFYTSLYDSQ------------D 247
Query: 192 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRH 250
VD VLT+GE++ +++ ++ LEE+ +D + EG + G+ S GY E VF+H
Sbjct: 248 VDCVLTSGEIVQILEQSGLSLNELEEASVDTLF-GATTEGEVVRHDGTRSDGYLEHVFKH 306
Query: 251 AAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
AAK LF ++ + ++T++N DF+EV LE +G+ LL+FA GF+N+QN+V K+K +
Sbjct: 307 AAKELFDMDVQ-EITYRTLKNKDFQEVTLERDGEVLLRFAAACGFRNIQNLVLKMKRGRF 365
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYD 370
Y FVEV+ACP GCLNG GQ++ G+ L++ LE Y + + P N V+ LY
Sbjct: 366 PYHFVEVLACPGGCLNGKGQMEAGSGKPDGALLRRLEEAY-AGIPVRLPEANAHVQRLYR 424
Query: 371 EWLEQPGSEKAKKHVHTEY 389
+WL+ S K + +HT Y
Sbjct: 425 DWLQGTDSPKVQAALHTSY 443
>gi|156376379|ref|XP_001630338.1| predicted protein [Nematostella vectensis]
gi|259511296|sp|A7SDA8.1|NARF_NEMVE RecName: Full=Probable cytosolic Fe-S cluster assembly factor
v1g210509
gi|156217357|gb|EDO38275.1| predicted protein [Nematostella vectensis]
Length = 441
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 145/306 (47%), Positives = 202/306 (66%), Gaps = 16/306 (5%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K V+IS+SPQSRAS+A F ++ KKL+ F K LGV +FDT+ +RD +L E+ EF
Sbjct: 115 KLVVISISPQSRASIAAKFNLTINDAAKKLSAFFKQLGVHYVFDTTFARDFSLAESQREF 174
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R++ Q+ D+ PML+SACPGW+CYAEK G YILPYISS KSPQQ +G+ +K
Sbjct: 175 VRRFRAYQQGDE----GCTPMLASACPGWMCYAEKTHGDYILPYISSTKSPQQIMGSLVK 230
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
H+ +G PD +YHV VMPC+DKKLEA+R+DF + S +VD V++
Sbjct: 231 DHLASVVGKSPDSVYHVCVMPCFDKKLEASRDDFYNDMYSTR-----------DVDCVIS 279
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
T EV +IQ +F +++ LDK+ + D G SGG+ E +F++A++ LF
Sbjct: 280 TVEVETMIQDHCPDFNSIDPVELDKLYCSSDSGDFFGHSGGGSGGFLEHIFKYASRELFD 339
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+ ++ L +KT+RN DFREV L+V+GK +LKFA YGF+N+QN+V+K+K K Y FVEV
Sbjct: 340 EKVD-VLTYKTLRNKDFREVTLQVDGKDVLKFAAAYGFRNIQNLVQKLKRGKSPYHFVEV 398
Query: 318 MACPSG 323
MACPSG
Sbjct: 399 MACPSG 404
>gi|194769624|ref|XP_001966903.1| GF22738 [Drosophila ananassae]
gi|259511277|sp|B3N018.1|NARF_DROAN RecName: Full=Probable cytosolic Fe-S cluster assembly factor
GF22738
gi|190619860|gb|EDV35384.1| GF22738 [Drosophila ananassae]
Length = 476
Score = 277 bits (708), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 154/391 (39%), Positives = 226/391 (57%), Gaps = 24/391 (6%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
N + V+ S++ Q SLA + IS + + L + +SLG + T + DL L+E
Sbjct: 108 NLSRTVVFSVATQPLISLAYRYKISVEETARHLAGYFRSLGADYVLSTKVADDLALLECR 167
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
NEF+ +Y R N+ L M SS+CPGW+CYAEK G++ILP+I++ +SPQQ +G
Sbjct: 168 NEFLEKY---------RENNDLTMFSSSCPGWVCYAEKTHGNFILPHIATTRSPQQIMGV 218
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
+K ++ +KL IYHVTVMPCYDKKLEA+REDF ++++ +VD
Sbjct: 219 LVKQYLGKKLNLPASRIYHVTVMPCYDKKLEASREDFFSEVNASR-----------DVDC 267
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAK 253
V+T+ EV ++ A E + LD + E +Y + SGGYAE VFR AA+
Sbjct: 268 VITSVEVEQMLLEVDQTLPAQEPADLDWPWWDERPELMVYSHESTYSGGYAEHVFRFAAR 327
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK-CDY 312
LF L+ RN D +E LE +G LL+FA+ GF+N+QN+V+K+K K +
Sbjct: 328 ELFNDARPIQLQIDQPRNRDLKEFFLEKDGIVLLRFAIANGFKNIQNLVQKLKRGKGSKF 387
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVE+MACPSGC+NGG Q++P GQ +EL + LE +Y + + + P N + LYD++
Sbjct: 388 HFVEIMACPSGCINGGAQVRPISGQHVRELTQKLEELYTK-LPRSQP-DNIGTKKLYDDF 445
Query: 373 LEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
+ G++K+ +HT YH V K I A W
Sbjct: 446 FDGFGTDKSHNLLHTSYHSVDKLIPALNIKW 476
>gi|312384015|gb|EFR28853.1| hypothetical protein AND_02688 [Anopheles darlingi]
Length = 327
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/348 (41%), Positives = 221/348 (63%), Gaps = 25/348 (7%)
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+ DT + DL LIE+ NEF+ RY +++S LPML+S+CPGW+CYAEK G++I
Sbjct: 2 VVDTKIADDLALIESRNEFVERYNTNRKS--------LPMLASSCPGWVCYAEKTHGNFI 53
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
LPYIS+ +SPQQ +G +K ++ + +G D IYHVTVMPCYDKKLEA+REDF ++++
Sbjct: 54 LPYISTTRSPQQIMGMLVKQYLAKIIGTTSDRIYHVTVMPCYDKKLEASREDFFNEVENS 113
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQ-LKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
+VD V+T+ E+ +++ L + +E+ P+D ++
Sbjct: 114 H-----------DVDCVITSIEIEQMLESLGLETLQLVEKCPIDWPWPTARPPAFVWSHE 162
Query: 238 GS-SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQ 296
S SGGY+E + ++AA+ LF ++ +EFK +RN+D RE LE EGK +L+FA+ GF+
Sbjct: 163 SSGSGGYSEHILKYAARKLFNLPVDA-VEFKPLRNNDMREAVLEHEGKVVLRFAIANGFR 221
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVML 356
N+QN+V+K+K K Y +VE+MACPSGCLNGG Q++P G++P+EL LE +Y ++
Sbjct: 222 NIQNMVQKLKRGKSTYDYVEIMACPSGCLNGGAQVRPDGGKTPRELTAELELMY-RSLPQ 280
Query: 357 ADPFKNPLVRSLYDEWLEQPG-SEKAKKHVHTEYHPVVKSITAQLHNW 403
++P +N V+ LY +L+ G + K + +HT YH + K +A W
Sbjct: 281 SNP-ENESVQHLYTTFLDSDGDNNKRQSLLHTTYHQIEKINSALNIKW 327
>gi|427796411|gb|JAA63657.1| Putative nuclear architecture related protein, partial
[Rhipicephalus pulchellus]
Length = 390
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 154/395 (38%), Positives = 230/395 (58%), Gaps = 40/395 (10%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K K ++++++PQ AS A + + KLT F K+LG + D++ R+ LIE
Sbjct: 29 KRKLIVVTVAPQVAASFAGKYSVGYESASAKLTGFFKTLGAHYVLDSTFGREFALIEVLR 88
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
+FI R+ + ++SD ++LP+L+S+CPG++CYAEK G +LP+IS +SPQQ +G+
Sbjct: 89 DFIERWAR-RDSD----RTALPLLASSCPGFVCYAEKTHGDVLLPHISRARSPQQIMGSL 143
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+K + +LG + D+IYHV+VMPCYDKKLEA+R DF DE +VD V
Sbjct: 144 VKKFLASRLGKKADQIYHVSVMPCYDKKLEASRADFY-----------DEIYSTRDVDCV 192
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKT 254
+T+ EV ++ + +F+ L + D + + G Y GS SGGY E VF AA+
Sbjct: 193 ITSVEVESMLAKEDKSFDELPSAASDSLF-RCEVGGRPYRHPGSGSGGYCEYVFVEAARL 251
Query: 255 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
LF + E + FKT+RN DFREV LE+ G+T+L+FA+ GF+N+QN+V+K+K KC Y F
Sbjct: 252 LFHRRPE-EVVFKTLRNQDFREVTLELGGETVLRFAIANGFRNIQNVVQKMKRAKCPYHF 310
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW-- 372
+E+MACP+GCLNGG Q++P G S + L++ + N V +Y +W
Sbjct: 311 IEIMACPAGCLNGGAQLRPDDGDS-RALLRRV--------------XNKAVLEVYRDWLG 355
Query: 373 LEQP----GSEKAKKHVHTEYHPVVKSITAQLHNW 403
LE P G + T YH + K+ A W
Sbjct: 356 LEDPLHGTGGSGDATLLRTTYHALEKTTNALNIRW 390
>gi|297702110|ref|XP_002828031.1| PREDICTED: nuclear prelamin A recognition factor isoform 1 [Pongo
abelii]
Length = 456
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 234/396 (59%), Gaps = 29/396 (7%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +Q+ +F +N K K +++S+ PQS A F +S ++L FLKS
Sbjct: 68 LSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKS 127
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT+ + D +++E+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+
Sbjct: 128 LGVHYVFDTTIAADFSILESQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERV 182
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG I ++ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA +E F
Sbjct: 183 LGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESFPP 242
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
L D VLT+GE+ +++ + ++ ++ +D + ++ ++
Sbjct: 243 ALHGSRG-----------ADCVLTSGEIAQIMEQGDL---SVRDAAVDTLFGDLKEDKVT 288
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
SS G+ +FRHAAK LF + +E + ++ +RN DF+EV LE G+ LL+FA Y
Sbjct: 289 RHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVLLRFAAAY 347
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+QN++ K+K K Y FVEV+AC GCLNG GQ + G + K L++ +E IY +
Sbjct: 348 GFRNIQNMILKLKKGKFPYHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYA-D 406
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 407 IPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 442
>gi|449283118|gb|EMC89821.1| Nuclear prelamin A recognition factor, partial [Columba livia]
Length = 487
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 154/427 (36%), Positives = 238/427 (55%), Gaps = 54/427 (12%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K K + +S+ PQS A F +S K+L FLKSLGV +FDT+ + D +++E
Sbjct: 79 DTSKHKVLAVSICPQSLPYFAAKFNLSVNDAAKRLCGFLKSLGVHYVFDTTIAADFSILE 138
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EF+ RY++ + + +LPM +SACPGWI YAE+ L + + P+I + KSPQQ +
Sbjct: 139 SQREFVQRYQRRNQEE-----HALPMFASACPGWIRYAERVLTNLVTPHICTAKSPQQIM 193
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ +K + ++ PD+I+HV V PCYDKKLEA REDF L + + EV
Sbjct: 194 GSLVKGYFARQQNLSPDKIFHVIVAPCYDKKLEALREDFYTALYNSQ-----------EV 242
Query: 193 DSVLTTGEVLDLI-QLKAVNFEA-----------------------------------LE 216
D VLT+GE ++ +LKA++F A +
Sbjct: 243 DCVLTSGERCEVWGKLKALDFRAGSVGLLHGWRELTLTRVGECEIVHIMEQKNVSMKDVT 302
Query: 217 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE 276
E +D + + + + S GY E +F+HAAK LFG ++ + +K ++N DF+E
Sbjct: 303 EVAVDSLFDGIKEGDVVRHDGKRSDGYLEHIFKHAAKELFGMDVK-EITYKALKNKDFQE 361
Query: 277 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 336
V LE +G+T+L+FA YGF+N+QN+V K+K K Y FVEV+ACP GCLNG GQ + + G
Sbjct: 362 VTLEKDGETVLRFAAAYGFRNIQNMVLKLKKGKFLYHFVEVLACPGGCLNGKGQAQTEDG 421
Query: 337 QSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSI 396
+ K L+ +E +Y + + P N V +Y +WLE S+K ++ +HT+Y V ++
Sbjct: 422 KPDKALLNQMEEMYAA-IPVRLPETNVHVEKMYQDWLEGMDSKKVQETLHTKYSAVNQTA 480
Query: 397 TAQLHNW 403
+ W
Sbjct: 481 SNLDIKW 487
>gi|296203462|ref|XP_002748914.1| PREDICTED: nuclear prelamin A recognition factor [Callithrix
jacchus]
Length = 635
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 238/397 (59%), Gaps = 29/397 (7%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +Q+ +F +N K K +++S+ PQS A F +S + ++L FLKS
Sbjct: 247 LSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTEASRRLCGFLKS 306
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT+ + D +++E+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+
Sbjct: 307 LGVHYVFDTTIATDFSILESQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERV 361
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG I ++ + KSPQQ +G+ +K + ++ P++I+H+ V PCYDKKLEA +E +
Sbjct: 362 LGRPITAHLCTAKSPQQIMGSLVKDYFARQQNLSPEKIFHIIVAPCYDKKLEALQEGALP 421
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
L T D VLT+GE+ +++ ++ ++++ +D + ++ ++
Sbjct: 422 ALHGSRGT-----------DCVLTSGEIAQIMEQGDLS---VKDATIDTLFGDLKEDKVT 467
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
SS G+ +FRHAAK LF + +E + ++ +RN DF+EV LE G+ +L+FA Y
Sbjct: 468 RHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAY 526
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+QN++ K+K K Y FVEV+AC GCLNG GQ + GQ+ K L++ +E IY +
Sbjct: 527 GFRNIQNMILKLKKGKFPYHFVEVLACAGGCLNGRGQAQTPEGQADKALLRQMEGIY-AD 585
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
+ + P + ++ LY EWLE S KA++ +HT Y
Sbjct: 586 IPVRRPGSSAHMQELYQEWLEGINSPKAQEVLHTTYQ 622
>gi|417401268|gb|JAA47525.1| Putative nuclear architecture related protein [Desmodus rotundus]
Length = 456
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 143/391 (36%), Positives = 229/391 (58%), Gaps = 21/391 (5%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K K + +S+ PQS A +S ++L FLKSLGV +FD + + D +++E
Sbjct: 87 DTSKHKVLAVSVCPQSLPYFAAKLSLSVTDASRRLCGFLKSLGVHYVFDMAVAADFSILE 146
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EF+ RY Q E + LPML+SACPGW+ YAE+ LG I P++ + KSPQQ +
Sbjct: 147 SQKEFVRRYHQHSEEE-----PMLPMLTSACPGWVRYAERVLGHPITPHLCTAKSPQQVM 201
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ +K + ++ PD+I+HV V PCYD+KLEA RED L+
Sbjct: 202 GSLVKDYFARRQNLSPDQIFHVIVAPCYDRKLEALREDVPTALNGSRA-----------A 250
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLT+GE++ +++ ++ ++++ +D + + +E + SS G+ VFRHAA
Sbjct: 251 DCVLTSGEIIQMMEQSDLS---VKDAAMDTLSGDRKEEEVRRHDSTSSDGHLAHVFRHAA 307
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LF + + G + ++T+RN DFREV LE G+ LL+FA YGF+NLQN+V K+K + +
Sbjct: 308 KELFNEDV-GEVTYRTLRNKDFREVTLEKSGEVLLRFAAAYGFRNLQNVVLKLKKGRLPF 366
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVEV+AC GCL+G GQ + + G++ + L++ +E IY + + P + V+ LY EW
Sbjct: 367 HFVEVLACAGGCLSGRGQAQAEDGRADRALLRQMEGIYAA-IPVRAPETSAHVQELYQEW 425
Query: 373 LEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
L S + ++ +HT Y + +++ W
Sbjct: 426 LGGADSPRVREALHTAYQGPGQPASSRDIKW 456
>gi|395536807|ref|XP_003770403.1| PREDICTED: nuclear prelamin A recognition factor [Sarcophilus
harrisii]
Length = 438
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 151/394 (38%), Positives = 227/394 (57%), Gaps = 47/394 (11%)
Query: 4 KQSLDEFLS--NINKG------KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLG 55
+Q+ EF N+NK K + +S+ PQS A F +S K+L FLKSLG
Sbjct: 70 QQNQKEFFRILNLNKKCDTSVHKVLAVSICPQSLPYFAAKFNLSVTDASKRLCGFLKSLG 129
Query: 56 VKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLG 115
V +FD++ + D +++E+ EF+ RY+Q ++ + SLPM +SACPGWI YAE+ LG
Sbjct: 130 VHYVFDSTIAVDFSILESQKEFVYRYRQQKQEE-----HSLPMFASACPGWIQYAERVLG 184
Query: 116 SYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL 175
+ ++P+I + KSPQQ +G+ +K + ++ PD+I+H+ V PCYDKKLEA REDF
Sbjct: 185 NPVIPHICTAKSPQQIMGSLVKDYFARQQNLSPDKIFHIIVAPCYDKKLEALREDFY--- 241
Query: 176 DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG 235
+Y +VD VLT+G++ M + +E +
Sbjct: 242 ---TASYNSH-----DVDCVLTSGKM---------------------MFGEIKEEDTVND 272
Query: 236 VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGF 295
S GY E +F++AAK LF I+ + +K ++N DF+EV LE G+ +L+FA YGF
Sbjct: 273 GTTRSDGYLEHIFKYAAKELFDMNIK-EITYKALKNKDFQEVTLEKNGEIMLRFAAAYGF 331
Query: 296 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM 355
+N+QN+V K+K K Y FVEV+ACP GCLNG GQ + + G+ K L++ +E +Y E +
Sbjct: 332 RNIQNMVLKLKKGKFPYHFVEVLACPGGCLNGKGQTQTEDGKPDKALLRRMEEVYAE-IP 390
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ P N V+ LY EWL+ S K ++ +HT Y
Sbjct: 391 VQLPETNTHVQKLYQEWLDGMDSPKVQEALHTTY 424
>gi|326930695|ref|XP_003211478.1| PREDICTED: LOW QUALITY PROTEIN: nuclear prelamin A recognition
factor-like [Meleagris gallopavo]
Length = 481
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/392 (38%), Positives = 228/392 (58%), Gaps = 37/392 (9%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K K + +S+ PQS A F +S K+L FLKSLGV +FDT+ + D +++E
Sbjct: 126 DTSKHKVLAVSICPQSLPYFAAKFSLSVNDAAKRLCGFLKSLGVHYVFDTTIAADFSILE 185
Query: 73 ACNEFIARY-KQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQT 131
+ EF+ RY ++SQE +LPM +SACPGWI YAE+ L + + P+I + KSPQQ
Sbjct: 186 SQREFVQRYQRRSQEE------HALPMFASACPGWIRYAERVLTNLVTPHICTAKSPQQI 239
Query: 132 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 191
+G+ +K + ++ P++I+HV V PCYDKKLEA REDF L + +E
Sbjct: 240 MGSLVKGYFARQQNLSPEKIFHVVVAPCYDKKLEALREDFYTALYNSQE----------- 288
Query: 192 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHA 251
VD VLT+GE++ +++ K V+ + + E +D S +HA
Sbjct: 289 VDCVLTSGEIVQIMEQKNVSMKDVTEVAVD-----------------SXXXXXXXXXKHA 331
Query: 252 AKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
AK LFG + + +K ++N DF+EV LE +G+T+L+FA YGF+N+QN+V K+K K
Sbjct: 332 AKELFGVDVRS-ITYKALKNKDFQEVTLEKDGETVLRFAAAYGFRNIQNMVLKLKKGKFL 390
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDE 371
Y FVEV+ACP GCLNG GQ + + G+ K L+ +E +Y + + P N V+ +Y +
Sbjct: 391 YHFVEVLACPGGCLNGKGQTQTEDGKPDKALLSQMEDVYAA-IPVRLPEANVYVQKMYQD 449
Query: 372 WLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
WLE S K ++ +HT+Y V ++ + W
Sbjct: 450 WLEGMDSRKVQETLHTKYSAVNQTASNLDIKW 481
>gi|355784742|gb|EHH65593.1| hypothetical protein EGM_02377 [Macaca fascicularis]
Length = 437
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 233/396 (58%), Gaps = 29/396 (7%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +Q+ +F +N K K +++S+ PQS A F +S ++L FLKS
Sbjct: 49 LSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNVSVTDASRRLCGFLKS 108
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT + D +++E+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+
Sbjct: 109 LGVHYVFDTRIAADFSILESQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERV 163
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG I ++ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA +E F
Sbjct: 164 LGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQEGFPP 223
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
L D VLT+GE+ ++ + +++++ +D + ++ ++
Sbjct: 224 ALHGSRGA-----------DCVLTSGEIAQIMDQGDL---SVKDAAVDTLFGDLKEDKVT 269
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
SS G+ +FRHAAK LF + +E + ++ +RN DF+EV LE G+ +L+FA Y
Sbjct: 270 RHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAY 328
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+QN++ K+K K Y FVEV+AC GCLNG GQ + G + K L++ +E IY +
Sbjct: 329 GFRNIQNMILKLKKGKFPYHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIY-AD 387
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + P + ++ LY EWLE S KA++ +HT Y
Sbjct: 388 IPVRRPESSAHMQELYQEWLEGINSPKAREVLHTTY 423
>gi|380811686|gb|AFE77718.1| nuclear prelamin A recognition factor isoform a [Macaca mulatta]
gi|383417473|gb|AFH31950.1| nuclear prelamin A recognition factor isoform a [Macaca mulatta]
gi|384942408|gb|AFI34809.1| nuclear prelamin A recognition factor isoform a [Macaca mulatta]
Length = 456
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 233/396 (58%), Gaps = 29/396 (7%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +Q+ +F +N K K +++S+ PQS A F +S ++L FLKS
Sbjct: 68 LSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKS 127
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT + D +++E+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+
Sbjct: 128 LGVHYVFDTRIAADFSILESQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERV 182
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG I ++ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA +E F
Sbjct: 183 LGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQEGFPP 242
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
L D VLT+GE+ ++ + +++++ +D + ++ ++
Sbjct: 243 ALHGSRG-----------ADCVLTSGEIAQIMDQGDL---SVKDAAVDTLFGDLKEDKVT 288
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
SS G+ +FRHAAK LF + +E + ++ +RN DF+EV LE G+ +L+FA Y
Sbjct: 289 RHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAY 347
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+QN++ K+K K Y FVEV+AC GCLNG GQ + G + K L++ +E IY +
Sbjct: 348 GFRNIQNMILKLKKGKFPYHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYA-D 406
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + P + ++ LY EWLE S KA++ +HT Y
Sbjct: 407 IPVRRPESSAHMQELYQEWLEGINSPKAREVLHTTY 442
>gi|84452151|ref|NP_001033707.1| nuclear prelamin A recognition factor isoform c [Homo sapiens]
gi|119610200|gb|EAW89794.1| hCG30379, isoform CRA_d [Homo sapiens]
Length = 397
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 233/396 (58%), Gaps = 29/396 (7%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +Q+ +F +N K K +++S+ PQS A F +S ++L FLKS
Sbjct: 9 LSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKS 68
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT+ + D +++E+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+
Sbjct: 69 LGVHYVFDTTIAADFSILESQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERV 123
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG I ++ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA +E
Sbjct: 124 LGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPP 183
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
L D VLT+GE+ +++ + ++ ++ +D + ++ ++
Sbjct: 184 ALHGSRGA-----------DCVLTSGEIAQIMEQGDL---SVRDAAVDTLFGDLKEDKVT 229
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
SS G+ +FRHAAK LF + +E + ++ +RN DF+EV LE G+ +L+FA Y
Sbjct: 230 RHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAY 288
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+QN++ K+K K + FVEV+AC GCLNG GQ + G + K L++ +E IY +
Sbjct: 289 GFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIY-AD 347
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 348 IPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 383
>gi|395825752|ref|XP_003786085.1| PREDICTED: nuclear prelamin A recognition factor isoform 1
[Otolemur garnettii]
Length = 456
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 150/396 (37%), Positives = 235/396 (59%), Gaps = 29/396 (7%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +Q+ +F +N K K +++S+ PQS A F +S ++L FLKS
Sbjct: 68 LSQQNAKDFFHVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKS 127
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT+ + D +++E+ EF+ RY Q S+ ER LPML+SACPGW+ YAE+
Sbjct: 128 LGVHYVFDTTIAADFSILESQKEFVRRYHQ--HSEKERV---LPMLTSACPGWVRYAERV 182
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG + P++ + KSPQQ +G+ +K + ++ P++I+HV V PCYD+KLEA RE F
Sbjct: 183 LGRPVTPHLCTAKSPQQVMGSLVKDYFARQQSLSPEKIFHVIVAPCYDRKLEALREGF-- 240
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
T R D VLT+GE+ Q+ A + +++++ +D + + +E +
Sbjct: 241 -----SSTSRSS----LGADCVLTSGEI---AQIMAQSDLSVQDATVDTLFGDSKEEMVM 288
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
SS G+ VFR+AAK LF + +E + ++ +RN DF+EV LE +G+ LL+FA Y
Sbjct: 289 RHDGASSDGHLVHVFRYAAKELFNEDVE-EVTYRALRNKDFQEVTLEKDGEVLLRFAAAY 347
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+QN++ K+K Y FVEV+ACP GCLNG GQ + + G K L++ +E IY +
Sbjct: 348 GFRNIQNMILKLKKGTFPYHFVEVLACPGGCLNGRGQAETQDGHVDKALLRQMEGIY-SD 406
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + P + V+ LY +WL+ S KA++ +HT +
Sbjct: 407 IPVRPPETSANVQELYQQWLDGVDSPKAQETLHTTF 442
>gi|395825754|ref|XP_003786086.1| PREDICTED: nuclear prelamin A recognition factor isoform 2
[Otolemur garnettii]
Length = 408
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 146/377 (38%), Positives = 229/377 (60%), Gaps = 21/377 (5%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K K +++S+ PQS A F +S ++L FLKSLGV +FDT+ + D +++E
Sbjct: 39 DTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILE 98
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EF+ RY Q S+ ER LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +
Sbjct: 99 SQKEFVRRYHQ--HSEKERV---LPMLTSACPGWVRYAERVLGRPVTPHLCTAKSPQQVM 153
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ +K + ++ P++I+HV V PCYD+KLEA RE F T R
Sbjct: 154 GSLVKDYFARQQSLSPEKIFHVIVAPCYDRKLEALREGF-------SSTSRSS----LGA 202
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLT+GE+ Q+ A + +++++ +D + + +E + SS G+ VFR+AA
Sbjct: 203 DCVLTSGEI---AQIMAQSDLSVQDATVDTLFGDSKEEMVMRHDGASSDGHLVHVFRYAA 259
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LF + +E + ++ +RN DF+EV LE +G+ LL+FA YGF+N+QN++ K+K Y
Sbjct: 260 KELFNEDVE-EVTYRALRNKDFQEVTLEKDGEVLLRFAAAYGFRNIQNMILKLKKGTFPY 318
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVEV+ACP GCLNG GQ + + G K L++ +E IY ++ + P + V+ LY +W
Sbjct: 319 HFVEVLACPGGCLNGRGQAETQDGHVDKALLRQMEGIY-SDIPVRPPETSANVQELYQQW 377
Query: 373 LEQPGSEKAKKHVHTEY 389
L+ S KA++ +HT +
Sbjct: 378 LDGVDSPKAQETLHTTF 394
>gi|355569052|gb|EHH25333.1| hypothetical protein EGK_09133 [Macaca mulatta]
Length = 429
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 233/396 (58%), Gaps = 29/396 (7%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +Q+ +F +N K K +++S+ PQS A F +S ++L FLKS
Sbjct: 41 LSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKS 100
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT + D +++E+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+
Sbjct: 101 LGVHYVFDTRIAADFSILESQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERV 155
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG I ++ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA +E F
Sbjct: 156 LGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQEGFPP 215
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
L D VLT+GE+ ++ + +++++ +D + ++ ++
Sbjct: 216 ALHGSRGA-----------DCVLTSGEIAQIMDQGDL---SVKDAAVDTLFGDLKEDKVT 261
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
SS G+ +FRHAAK LF + +E + ++ +RN DF+EV LE G+ +L+FA Y
Sbjct: 262 RHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAY 320
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+QN++ K+K K Y FVEV+AC GCLNG GQ + G + K L++ +E IY +
Sbjct: 321 GFRNIQNMILKLKKGKFPYHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIY-AD 379
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + P + ++ LY EWLE S KA++ +HT Y
Sbjct: 380 IPVRRPESSAHMQELYQEWLEGINSPKAREVLHTTY 415
>gi|6912524|ref|NP_036468.1| nuclear prelamin A recognition factor isoform a [Homo sapiens]
gi|74735021|sp|Q9UHQ1.1|NARF_HUMAN RecName: Full=Nuclear prelamin A recognition factor; AltName:
Full=Iron-only hydrogenase-like protein 2; Short=IOP2
gi|5777952|gb|AAD51446.1|AF128406_1 nuclear prelamin A recognition factor [Homo sapiens]
gi|7021904|dbj|BAA91432.1| unnamed protein product [Homo sapiens]
gi|119610204|gb|EAW89798.1| hCG30379, isoform CRA_h [Homo sapiens]
Length = 456
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 233/396 (58%), Gaps = 29/396 (7%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +Q+ +F +N K K +++S+ PQS A F +S ++L FLKS
Sbjct: 68 LSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKS 127
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT+ + D +++E+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+
Sbjct: 128 LGVHYVFDTTIAADFSILESQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERV 182
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG I ++ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA +E
Sbjct: 183 LGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPP 242
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
L D VLT+GE+ +++ + ++ ++ +D + ++ ++
Sbjct: 243 ALHGSRG-----------ADCVLTSGEIAQIMEQGDL---SVRDAAVDTLFGDLKEDKVT 288
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
SS G+ +FRHAAK LF + +E + ++ +RN DF+EV LE G+ +L+FA Y
Sbjct: 289 RHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAY 347
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+QN++ K+K K + FVEV+AC GCLNG GQ + G + K L++ +E IY +
Sbjct: 348 GFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYA-D 406
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 407 IPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 442
>gi|119610203|gb|EAW89797.1| hCG30379, isoform CRA_g [Homo sapiens]
Length = 455
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 233/396 (58%), Gaps = 29/396 (7%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +Q+ +F +N K K +++S+ PQS A F +S ++L FLKS
Sbjct: 67 LSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKS 126
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT+ + D +++E+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+
Sbjct: 127 LGVHYVFDTTIAADFSILESQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERV 181
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG I ++ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA +E
Sbjct: 182 LGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPP 241
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
L D VLT+GE+ +++ + ++ ++ +D + ++ ++
Sbjct: 242 ALHGSRG-----------ADCVLTSGEIAQIMEQGDL---SVRDAAVDTLFGDLKEDKVT 287
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
SS G+ +FRHAAK LF + +E + ++ +RN DF+EV LE G+ +L+FA Y
Sbjct: 288 RHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAY 346
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+QN++ K+K K + FVEV+AC GCLNG GQ + G + K L++ +E IY +
Sbjct: 347 GFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYA-D 405
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 406 IPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 441
>gi|410337649|gb|JAA37771.1| nuclear prelamin A recognition factor [Pan troglodytes]
Length = 456
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 233/396 (58%), Gaps = 29/396 (7%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +Q+ +F +N K K +++S+ PQS A F +S ++L FLKS
Sbjct: 68 LSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKS 127
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT+ + D +++E+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+
Sbjct: 128 LGVHYVFDTTIAADFSILESQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERV 182
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG I ++ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA +E
Sbjct: 183 LGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPP 242
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
L D VLT+GE+ +++ + ++ ++ +D + ++ ++
Sbjct: 243 ALHGSRG-----------ADCVLTSGEIAQIMEQGDL---SVRDAAVDTLFGDLKEDKVT 288
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
SS G+ +FRHAAK LF + +E + ++ +RN DF+EV LE G+ +L+FA Y
Sbjct: 289 RHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAY 347
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+QN++ K+K K + FVEV+AC GCLNG GQ + G + K L++ +E IY +
Sbjct: 348 GFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYA-D 406
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 407 IPVRRPESSAHVQELYQEWLEGVNSPKAREVLHTTY 442
>gi|397475147|ref|XP_003809009.1| PREDICTED: nuclear prelamin A recognition factor [Pan paniscus]
gi|410212944|gb|JAA03691.1| nuclear prelamin A recognition factor [Pan troglodytes]
gi|410262860|gb|JAA19396.1| nuclear prelamin A recognition factor [Pan troglodytes]
gi|410290076|gb|JAA23638.1| nuclear prelamin A recognition factor [Pan troglodytes]
Length = 456
Score = 270 bits (690), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 233/396 (58%), Gaps = 29/396 (7%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +Q+ +F +N K K +++S+ PQS A F +S ++L FLKS
Sbjct: 68 LSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKS 127
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT+ + D +++E+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+
Sbjct: 128 LGVHYVFDTTIAADFSILESQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERV 182
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG I ++ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA +E
Sbjct: 183 LGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPP 242
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
L D VLT+GE+ +++ + ++ ++ +D + ++ ++
Sbjct: 243 ALHGSRG-----------ADCVLTSGEIAQIMEQGDL---SVRDAAVDTLFGDLKEDKVT 288
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
SS G+ +FRHAAK LF + +E + ++ +RN DF+EV LE G+ +L+FA Y
Sbjct: 289 RHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAY 347
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+QN++ K+K K + FVEV+AC GCLNG GQ + G + K L++ +E IY +
Sbjct: 348 GFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYA-D 406
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 407 IPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 442
>gi|426346279|ref|XP_004040807.1| PREDICTED: nuclear prelamin A recognition factor isoform 3 [Gorilla
gorilla gorilla]
Length = 408
Score = 270 bits (690), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 142/377 (37%), Positives = 227/377 (60%), Gaps = 21/377 (5%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K K +++S+ PQS A F +S ++L FLKSLGV +FDT+ + D +++E
Sbjct: 39 DTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILE 98
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+ LG I ++ + KSPQQ +
Sbjct: 99 SQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVM 153
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ +K + ++ P++I+HV V PCYDKKLEA +E L
Sbjct: 154 GSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPPALHGSRG-----------A 202
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLT+GE+ +++ + ++ ++ +D + ++ ++ SS G+ +FRHAA
Sbjct: 203 DCVLTSGEIAQIMEQGDL---SVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAA 259
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LF + +E + ++ +RN DF+EV LE G+ +L+FA YGF+N+QN++ K+K K +
Sbjct: 260 KELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPF 318
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVEV+AC GCLNG GQ + G + K L++ +E IY ++ + P + V+ LY EW
Sbjct: 319 HFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYA-DIPVRRPESSAHVQELYQEW 377
Query: 373 LEQPGSEKAKKHVHTEY 389
LE S KA++ +HT Y
Sbjct: 378 LEGINSPKAREVLHTTY 394
>gi|426346275|ref|XP_004040805.1| PREDICTED: nuclear prelamin A recognition factor isoform 1 [Gorilla
gorilla gorilla]
Length = 456
Score = 270 bits (690), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 233/396 (58%), Gaps = 29/396 (7%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +Q+ +F +N K K +++S+ PQS A F +S ++L FLKS
Sbjct: 68 LSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKS 127
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT+ + D +++E+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+
Sbjct: 128 LGVHYVFDTTIAADFSILESQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERV 182
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG I ++ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA +E
Sbjct: 183 LGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPP 242
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
L D VLT+GE+ +++ + ++ ++ +D + ++ ++
Sbjct: 243 ALHGSRG-----------ADCVLTSGEIAQIMEQGDL---SVRDAAVDTLFGDLKEDKVT 288
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
SS G+ +FRHAAK LF + +E + ++ +RN DF+EV LE G+ +L+FA Y
Sbjct: 289 RHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAY 347
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+QN++ K+K K + FVEV+AC GCLNG GQ + G + K L++ +E IY +
Sbjct: 348 GFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYA-D 406
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 407 IPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 442
>gi|134284357|ref|NP_001077077.1| nuclear prelamin A recognition factor isoform d [Homo sapiens]
gi|16741189|gb|AAH16440.1| NARF protein [Homo sapiens]
gi|119610201|gb|EAW89795.1| hCG30379, isoform CRA_e [Homo sapiens]
Length = 408
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 142/377 (37%), Positives = 227/377 (60%), Gaps = 21/377 (5%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K K +++S+ PQS A F +S ++L FLKSLGV +FDT+ + D +++E
Sbjct: 39 DTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTTIAADFSILE 98
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+ LG I ++ + KSPQQ +
Sbjct: 99 SQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVM 153
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ +K + ++ P++I+HV V PCYDKKLEA +E L
Sbjct: 154 GSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPPALHGSRG-----------A 202
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLT+GE+ +++ + ++ ++ +D + ++ ++ SS G+ +FRHAA
Sbjct: 203 DCVLTSGEIAQIMEQGDL---SVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAA 259
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LF + +E + ++ +RN DF+EV LE G+ +L+FA YGF+N+QN++ K+K K +
Sbjct: 260 KELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPF 318
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVEV+AC GCLNG GQ + G + K L++ +E IY ++ + P + V+ LY EW
Sbjct: 319 HFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYA-DIPVRRPESSAHVQELYQEW 377
Query: 373 LEQPGSEKAKKHVHTEY 389
LE S KA++ +HT Y
Sbjct: 378 LEGINSPKAREVLHTTY 394
>gi|348558154|ref|XP_003464883.1| PREDICTED: nuclear prelamin A recognition factor-like isoform 1
[Cavia porcellus]
Length = 455
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 146/377 (38%), Positives = 225/377 (59%), Gaps = 22/377 (5%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K K +++S+ PQS A +S ++L FLKSLGV +FD + + D +++E
Sbjct: 87 DTSKHKVLVVSVCPQSLPYFAAKLNLSVTDASRRLCGFLKSLGVHYVFDMAIAADFSILE 146
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EF+ RY Q SD++R+ LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +
Sbjct: 147 SQREFVRRYHQ--HSDEQRA---LPMLTSACPGWVRYAERVLGRPVTPHLCTAKSPQQVM 201
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ +K + ++ P++I+HV V PCYD+KLEA +E F T
Sbjct: 202 GSLVKDYFAKQQNLPPEKIFHVVVAPCYDRKLEALQEGFSTAAPGARGT----------- 250
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLT+GEV ++ + +++++ +D + + + + AGS G A VFRHAA
Sbjct: 251 DCVLTSGEVAQIMDQSGL---SVKDAAVDTLFGDEEVAMRRHDGAGSDGHLAH-VFRHAA 306
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LF + +E + + +RN DF+EV LE G+ LL+FA YGF+N+QN+V K++ K Y
Sbjct: 307 KELFNERVE-EITYCPLRNKDFQEVTLEKNGEVLLRFAAAYGFRNVQNLVLKLRKGKFPY 365
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVEV+ACP GCLNG GQ + K G K L++ +E IY ++ + P + V+ LY EW
Sbjct: 366 HFVEVLACPGGCLNGRGQAQTKDGHMDKSLLRQMEGIY-ADIPVQPPESSTHVQELYQEW 424
Query: 373 LEQPGSEKAKKHVHTEY 389
LE S +A + +HT +
Sbjct: 425 LEGTDSLRAHETLHTTF 441
>gi|348558156|ref|XP_003464884.1| PREDICTED: nuclear prelamin A recognition factor-like isoform 2
[Cavia porcellus]
Length = 407
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/377 (38%), Positives = 225/377 (59%), Gaps = 22/377 (5%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K K +++S+ PQS A +S ++L FLKSLGV +FD + + D +++E
Sbjct: 39 DTSKHKVLVVSVCPQSLPYFAAKLNLSVTDASRRLCGFLKSLGVHYVFDMAIAADFSILE 98
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EF+ RY Q SD++R+ LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +
Sbjct: 99 SQREFVRRYHQ--HSDEQRA---LPMLTSACPGWVRYAERVLGRPVTPHLCTAKSPQQVM 153
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ +K + ++ P++I+HV V PCYD+KLEA +E F T
Sbjct: 154 GSLVKDYFAKQQNLPPEKIFHVVVAPCYDRKLEALQEGFSTAAPGARGT----------- 202
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLT+GEV ++ + +++++ +D + + + + AGS G A VFRHAA
Sbjct: 203 DCVLTSGEVAQIMDQSGL---SVKDAAVDTLFGDEEVAMRRHDGAGSDGHLAH-VFRHAA 258
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LF + +E + + +RN DF+EV LE G+ LL+FA YGF+N+QN+V K++ K Y
Sbjct: 259 KELFNERVE-EITYCPLRNKDFQEVTLEKNGEVLLRFAAAYGFRNVQNLVLKLRKGKFPY 317
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVEV+ACP GCLNG GQ + K G K L++ +E IY ++ + P + V+ LY EW
Sbjct: 318 HFVEVLACPGGCLNGRGQAQTKDGHMDKSLLRQMEGIY-ADIPVQPPESSTHVQELYQEW 376
Query: 373 LEQPGSEKAKKHVHTEY 389
LE S +A + +HT +
Sbjct: 377 LEGTDSLRAHETLHTTF 393
>gi|47215781|emb|CAG02577.1| unnamed protein product [Tetraodon nigroviridis]
Length = 440
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 149/406 (36%), Positives = 226/406 (55%), Gaps = 47/406 (11%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K K ++ S+ PQS A FG+ + KL FLK LGV +FDTS + +++E
Sbjct: 48 DASKHKVLVASICPQSLPFFAVKFGVQVTEAAHKLCGFLKGLGVHYVFDTSLAAGFSILE 107
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
EF+ RY++ + +LPM +S+CPGWI YAE+ LG+ + P+I +SPQQ +
Sbjct: 108 CQKEFVQRYRRKHHD-----SQALPMFTSSCPGWIRYAERVLGTLVTPHICIARSPQQIM 162
Query: 133 GATIKHHIC-QKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 191
G +K Q+ P++IYH+ V PC+DKKLEA RE+F L LE +
Sbjct: 163 GCLVKDFFSKQQQKLSPEKIYHMLVAPCFDKKLEAVREEFYNSL-----------LETRD 211
Query: 192 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHA 251
VD VLT+GE+ DL+ + V + L+ PLD +L D + S G+ E VF+HA
Sbjct: 212 VDCVLTSGEIYDLMGQRKVAVDKLDSVPLDHVLGESGDAALMRHEGRGSEGFLEHVFKHA 271
Query: 252 AKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
AK LFG+ + + +K +RN DF+EV LE +G+TLL+FA YGF+N+Q +V +++ +
Sbjct: 272 AKELFGQDVH-EITYKNLRNRDFQEVTLERDGETLLQFAAVYGFRNIQTLVHRMRKGRVP 330
Query: 312 YQFVEVMACP----------------------------SGCLNGGGQIKPKPGQSPKELI 343
YQ VEV++CP SGCL+G GQ + + G+ K LI
Sbjct: 331 YQLVEVLSCPGGKAATCFRRRSKWNFRLLLRDTGLRFHSGCLSGRGQAESEEGRLDKNLI 390
Query: 344 KTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ +E +Y ++ + P NP + LY +WL+ S +A +HT+Y
Sbjct: 391 QQMEEVY-SSLPVRLPEVNPALHVLYHDWLQGQDSPQASILLHTQY 435
>gi|193787011|dbj|BAG51834.1| unnamed protein product [Homo sapiens]
Length = 397
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 145/396 (36%), Positives = 232/396 (58%), Gaps = 29/396 (7%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +Q+ +F +N K K +++S+ PQS A F +S ++L FLKS
Sbjct: 9 LSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKS 68
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT+ + D +++E+ EF+ Y+Q S++ER+ LPML+SACPGW+ YAE+
Sbjct: 69 LGVHYVFDTTIAADFSILESQKEFVRLYRQ--HSEEERT---LPMLTSACPGWVRYAERV 123
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG I ++ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA +E
Sbjct: 124 LGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPP 183
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
L D VLT+GE+ +++ + ++ ++ +D + ++ ++
Sbjct: 184 ALHGSRGA-----------DCVLTSGEIAQIMEQGDL---SVRDAAVDTLFGDLKEDKVT 229
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
SS G+ +FRHAAK LF + +E + ++ +RN DF+EV LE G+ +L+FA Y
Sbjct: 230 RHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAY 288
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+QN++ K+K K + FVEV+AC GCLNG GQ + G + K L++ +E IY +
Sbjct: 289 GFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIY-AD 347
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 348 IPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 383
>gi|355706349|gb|AES02608.1| nuclear prelamin A recognition factor [Mustela putorius furo]
Length = 340
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 209/345 (60%), Gaps = 21/345 (6%)
Query: 45 KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 104
++L FLKSLGV +FDT+ + D +++E+ EF+ RY+Q E + +LPML+SACP
Sbjct: 4 RRLCGFLKSLGVHYVFDTAVAADFSILESQKEFVRRYQQHSEEE-----PALPMLTSACP 58
Query: 105 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKL 164
GW+ YAE+ LG + P++ + KSPQQ +G+ +K + ++ PD+I+HV V PCYDKKL
Sbjct: 59 GWVRYAERVLGHPVTPHLCTAKSPQQIMGSLVKDYFARRQNLSPDQIFHVIVAPCYDKKL 118
Query: 165 EAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKML 224
EA RED D VLT+GEV +Q+ N ++++ +D +
Sbjct: 119 EALREDLPTACHGSRGA-----------DCVLTSGEV---VQMMEQNDHTVKDAAVDTLF 164
Query: 225 TNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGK 284
+E SS GY VFRHAAK LF + + G + ++T+RN DF+EV LE G+
Sbjct: 165 GGPKEEEVRRHDGASSDGYLAHVFRHAAKQLFDEDV-GEVTYRTLRNKDFQEVTLEKNGE 223
Query: 285 TLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIK 344
LL+FA YGF+N+QN+V K+K + Y FVEV+AC GCL+G GQ + + G++ K L++
Sbjct: 224 VLLRFAAAYGFRNIQNVVLKLKKGRFPYHFVEVLACAGGCLSGRGQAQTEDGRADKALLR 283
Query: 345 TLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+E IY ++ + P + V+ LY EWL+ S + ++ +HT Y
Sbjct: 284 QMEGIY-ADIPVRPPETSAHVQELYQEWLDGADSPRVQEALHTMY 327
>gi|403280732|ref|XP_003931865.1| PREDICTED: nuclear prelamin A recognition factor [Saimiri
boliviensis boliviensis]
Length = 471
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 149/397 (37%), Positives = 239/397 (60%), Gaps = 31/397 (7%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +Q+ +F +N K K +++S+ PQS A F +S + ++L LKS
Sbjct: 83 LSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTEASRRLCGSLKS 142
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT+ + D +++E+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+
Sbjct: 143 LGVHFVFDTTIAADFSILESQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERV 197
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG I ++ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA +E +
Sbjct: 198 LGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQEGSLS 257
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNV-DDEGH 232
L T D VLT+GE+ +++ + +++++ +D + ++ +D+
Sbjct: 258 ALHGSRGT-----------DCVLTSGEIAQIMEQGDL---SVKDAAIDTLFGDLREDKVT 303
Query: 233 LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALC 292
+ AGS G A +FRHAAK LF + +E + ++ +RN DF+EV LE +G+ +L+FA
Sbjct: 304 RHDGAGSDGHLAH-IFRHAAKELFNEDVE-EVTYRALRNKDFQEVTLEKDGEVVLRFAAA 361
Query: 293 YGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE 352
GF+N+QN++ K+K K Y FVEV+AC GCLNG GQ + G + K L++ +E IY
Sbjct: 362 CGFRNIQNMILKLKKGKFPYHFVEVLACAGGCLNGRGQAQTPEGHADKALLRQMEGIY-A 420
Query: 353 NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
++ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 421 DIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 457
>gi|116007462|ref|NP_001036427.1| CG17683, isoform E [Drosophila melanogaster]
gi|51951086|gb|EAL24588.1| CG17683, isoform E [Drosophila melanogaster]
Length = 296
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 139/309 (44%), Positives = 202/309 (65%), Gaps = 16/309 (5%)
Query: 98 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 157
MLSS+CPGW+CYAEK G+++LPY+S+ +SPQQ +G +K + K+ IYHVTVM
Sbjct: 1 MLSSSCPGWVCYAEKTHGNFLLPYVSTTRSPQQIMGVLVKQILADKMNVPASRIYHVTVM 60
Query: 158 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 217
PCYDKKLEA+REDF S+ RD VD V+T+ EV L+ +
Sbjct: 61 PCYDKKLEASREDFF----SKANNSRD-------VDCVITSVEVEQLLSEAQQPLSQYDL 109
Query: 218 SPLDKMLTNVDDEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE 276
LD +NV E ++ + SGGYAE +F++AAK +F + ++ LEFK ++N DFRE
Sbjct: 110 LDLDWPWSNVRPEFMVWAHEKTLSGGYAEHIFKYAAKHIFNEDLKTELEFKQLKNRDFRE 169
Query: 277 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-DYQFVEVMACPSGCLNGGGQIKPKP 335
+ L+ GKT+LKFA+ GF+N+QN+V+K+K K +Y FVEVMACPSGC+NGG QI+P
Sbjct: 170 IILKQNGKTVLKFAIANGFRNIQNLVQKLKREKVSNYHFVEVMACPSGCINGGAQIRPTT 229
Query: 336 GQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKS 395
GQ +EL + LE +Y +N+ ++P +N L + +Y+++L+ S+K+ +HT YH VV
Sbjct: 230 GQHVRELTRKLEELY-QNLPRSEP-ENSLTKHIYNDFLDGFQSDKSYDVLHTRYHDVVSE 287
Query: 396 ITAQLH-NW 403
++ L+ NW
Sbjct: 288 LSISLNINW 296
>gi|109119241|ref|XP_001113522.1| PREDICTED: nuclear prelamin A recognition factor isoform 3 [Macaca
mulatta]
Length = 457
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 151/396 (38%), Positives = 231/396 (58%), Gaps = 28/396 (7%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +Q+ +F +N K K +++S+ PQS A F +S ++L FLKS
Sbjct: 68 LSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKS 127
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT + D +++E+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+
Sbjct: 128 LGVHYVFDTRIAADFSILESQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERV 182
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG I ++ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA +E F
Sbjct: 183 LGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQEGFPP 242
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
L D VLT+GE+ ++ ++ + S L K +D+
Sbjct: 243 ALHGSRG-----------ADCVLTSGEIAQIMDQGDLSVKDAA-STLCKFGDLKEDKVTR 290
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
+ A SS G+ +FRHAAK LF + +E + ++ +RN DF+EV LE G+ +L+FA Y
Sbjct: 291 HDGA-SSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAY 348
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+QN++ K+K K Y FVEV+AC GCLNG GQ + G + K L++ +E IY +
Sbjct: 349 GFRNIQNMILKLKKGKFPYHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYA-D 407
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + P + ++ LY EWLE S KA++ +HT Y
Sbjct: 408 IPVRRPESSAHMQELYQEWLEGINSPKAREVLHTTY 443
>gi|297273920|ref|XP_001113437.2| PREDICTED: nuclear prelamin A recognition factor isoform 1 [Macaca
mulatta]
Length = 409
Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 147/377 (38%), Positives = 225/377 (59%), Gaps = 20/377 (5%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ +K K +++S+ PQS A F +S ++L FLKSLGV +FDT + D +++E
Sbjct: 39 DTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVHYVFDTRIAADFSILE 98
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+ LG I ++ + KSPQQ +
Sbjct: 99 SQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVM 153
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ +K + ++ P++I+HV V PCYDKKLEA +E F L
Sbjct: 154 GSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQEGFPPALHGSRG-----------A 202
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLT+GE+ ++ ++ + S L K +D+ + A SS G+ +FRHAA
Sbjct: 203 DCVLTSGEIAQIMDQGDLSVKDAA-STLCKFGDLKEDKVTRHDGA-SSDGHLAHIFRHAA 260
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LF + +E + ++ +RN DF+EV LE G+ +L+FA YGF+N+QN++ K+K K Y
Sbjct: 261 KELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPY 319
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVEV+AC GCLNG GQ + G + K L++ +E IY ++ + P + ++ LY EW
Sbjct: 320 HFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYA-DIPVRRPESSAHMQELYQEW 378
Query: 373 LEQPGSEKAKKHVHTEY 389
LE S KA++ +HT Y
Sbjct: 379 LEGINSPKAREVLHTTY 395
>gi|403374972|gb|EJY87454.1| hypothetical protein OXYTRI_02709 [Oxytricha trifallax]
Length = 516
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 158/430 (36%), Positives = 240/430 (55%), Gaps = 62/430 (14%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSI 59
+++K S ++FL ++ VI+++SPQS SL+ + S + FKKL T LG + +
Sbjct: 74 LIQKHSTEQFLKLFDQQNFVIVAISPQSLGSLSLFYQQNSEVVTFKKLQTVFTKLGAQMV 133
Query: 60 FDTSCSRDLTLIEACNEFIARYKQS--------QESDDERSNS-----------SLPMLS 100
D S LTL A +EF ++ QS Q+ ++E +S +P+L+
Sbjct: 134 IDLSTFSLLTLQLAYDEFKNKFTQSEKFKKINNQKGEEEVKSSKKVFTKQSQEPGIPILA 193
Query: 101 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 160
S CPGW+CYAEK +G P++S+VKSPQQ G +KH++ K P+ + VTVMPCY
Sbjct: 194 SECPGWVCYAEKVVGDQAFPFMSTVKSPQQLCGCLLKHYVSLKNKLSPEHVKIVTVMPCY 253
Query: 161 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE--- 217
DKKLEA R +F D ++ + LEI EVD+VL T E+ DLI ++ +F ++E
Sbjct: 254 DKKLEAVRPNFTLSEDVGQD---NPDLEIKEVDTVLATHELTDLIGVERDSFNLIQEYQW 310
Query: 218 ----------SP--------LDKMLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLF 256
SP +++ + D L+ ++ +S GY E VFR AAK +F
Sbjct: 311 QKDEDLAMKGSPSGWGFMELMEQFVEVSQDVQRLHMISMYNMTSNGYLEYVFRRAAKEIF 370
Query: 257 GKVIEGHLEFKTI--RNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
+ I E I +N D +E LE++GK +++FA YGF+N+QN++R +K KC+Y +
Sbjct: 371 NQQISPQTELNYIQGKNKDLKECVLEIDGKVVMRFAAAYGFRNIQNVIRNIKRGKCEYDY 430
Query: 315 VEVMACPSGCLNGGGQIKPKP-GQSPKELIKTLETIYLENV----MLADPFKNPLVRSL- 368
VE+MACP GCLNGGGQIKP SPK+L+ LE I ++N+ ++ +P N ++ L
Sbjct: 431 VEIMACPGGCLNGGGQIKPAQFSTSPKDLLDNLE-IQMKNMNNKEIVPEPESNKVIHQLI 489
Query: 369 ------YDEW 372
Y +W
Sbjct: 490 QMMSITYQDW 499
>gi|281354394|gb|EFB29978.1| hypothetical protein PANDA_016122 [Ailuropoda melanoleuca]
Length = 463
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 146/421 (34%), Positives = 239/421 (56%), Gaps = 38/421 (9%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
++++ K + +S+ PQS A F +S ++L FLK LGV +FDT+ + +++E
Sbjct: 51 DVSQHKVLAVSVCPQSLPYFAAKFRLSVTDASRRLCGFLKGLGVHYVFDTAIAAGFSILE 110
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EF+ RY++ E + +LPML+SACPGW+ YAE+ LG + P++ + KSPQQ +
Sbjct: 111 SQKEFVRRYQRHSEGE-----PALPMLTSACPGWVRYAERVLGHPVTPHLCTAKSPQQIM 165
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDF-VFQLDSQEETYRDEGLEIPE 191
G+ +K + ++ PD+I+HV V PCYDKKLEA REDF S+ + +P+
Sbjct: 166 GSLVKDYFARRQNLSPDKIFHVIVAPCYDKKLEALREDFPTASHGSRGADCVLTSVMVPK 225
Query: 192 VD-SVLTTGEVL---------------------------DLIQLKAVNFEALEESPLDKM 223
V + GE++ ++IQ+ + A++++ +D +
Sbjct: 226 VTLTEAPVGEIILEAAPEEAAGMGLCGSFHGALRLLFVGEIIQIMEQSDLAVKDAAVDTL 285
Query: 224 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG 283
+ +E SS GY VFRHAAK LF + + G + ++T+RN DF+EV LE G
Sbjct: 286 FGGLKEEEVRRHDGASSDGYLAHVFRHAAKQLFDEDV-GEVTYRTLRNKDFQEVTLEKNG 344
Query: 284 KTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI 343
+ LL+FA YGF+N+QN+V K+K + Y FVEV+AC GCLNG GQ + + G + K L+
Sbjct: 345 EVLLRFAAAYGFRNIQNVVLKLKKGRFPYHFVEVLACAGGCLNGRGQAQTEDGHADKALL 404
Query: 344 KTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH-PVVKSITAQLHN 402
+ +E IY ++ + P + V+ LY EWL+ S + ++ +HT Y P +++++ +
Sbjct: 405 RQMEGIY-ADIPVRPPETSAHVQELYQEWLDGVDSPRVQEALHTMYQGPGLRAVSRDI-K 462
Query: 403 W 403
W
Sbjct: 463 W 463
>gi|303286549|ref|XP_003062564.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456081|gb|EEH53383.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 388
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 136/289 (47%), Positives = 181/289 (62%), Gaps = 24/289 (8%)
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSS-----LPMLSSACPGWICYAEKQL 114
DT+ SRDL+L+E+C EF++RY+ ++ + + LP+L+SACPGW+CYAEK
Sbjct: 109 LDTTASRDLSLLESCEEFVSRYRNAKHAAVTNTPPPSPADVLPVLTSACPGWVCYAEKTH 168
Query: 115 GSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQ 174
G +L ++S+VKSPQQ +G +K I +LG ++H TVMPC+DKKLEA+REDF
Sbjct: 169 GGAVLNHVSAVKSPQQVMGCIVKRKIAAELGVPASAVFHATVMPCFDKKLEASREDFAMD 228
Query: 175 LDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKA---VNFEALEESPLDKMLTNVDDEG 231
D G + EVD VLTTGEV ++I + A AL +P + L+ D
Sbjct: 229 ---------DLGENVREVDCVLTTGEVAEMIAVAAGLGAPSSALAFNPRPRCLSTPPDAF 279
Query: 232 HLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFKT--IRNSDFREVALEVEGKTLLK 288
L+ V S SGGY + VFRHAAK L G + G L++ T RN D +EV LEV+G +L+
Sbjct: 280 QLHPVVRSGSGGYLDAVFRHAAKVLHGVDVTGPLKYATPSSRNLDLKEVTLEVDGAVVLR 339
Query: 289 FALCYGFQNLQNIVRKVKMRKC----DYQFVEVMACPSGCLNGGGQIKP 333
FA YGF+N+QNIVRK K Y FVE+MACPSGCLNGGGQ+ P
Sbjct: 340 FAAAYGFRNIQNIVRKCKAGSVATGDAYDFVEIMACPSGCLNGGGQLPP 388
>gi|335297199|ref|XP_003131175.2| PREDICTED: nuclear prelamin A recognition factor isoform 1 [Sus
scrofa]
Length = 455
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 143/400 (35%), Positives = 232/400 (58%), Gaps = 38/400 (9%)
Query: 2 LEKQSLDEFLS--NINKG------KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
+ +Q+ +FL N+NK + + +S+ PQS A F +S ++L FLKS
Sbjct: 68 VAQQNAKDFLRVLNLNKKCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKS 127
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FD + + D +++E+ EF+ R+ Q E + +LPML+SACPGW+ YAE+
Sbjct: 128 LGVHYVFDATIAADFSILESQKEFVRRFHQHSEEE-----PALPMLTSACPGWVRYAERV 182
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG + P++ + +SPQQ +G+ +K + ++ D I+HV V PCYD+KLEA +ED
Sbjct: 183 LGHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQED--- 239
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
+ + +R D VLT+GE+ +++ ++ + ++ LD + +V +E
Sbjct: 240 -VPTASPGFRG-------TDCVLTSGEIAQMMEQSDLS---VRDAALDTLFGDVREEVRR 288
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
+ A S G A +FRHAAK LF + + G L ++ +RN DF+EV LE GK LL+FA Y
Sbjct: 289 HDGASSDGCLAH-IFRHAAKELFDEDV-GELTYRALRNRDFQEVTLEKSGKVLLRFAAAY 346
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N+QN+V K+K + Y FVEV+AC GCLNG GQ + + G++ + L++ + ++
Sbjct: 347 GFRNIQNVVLKLKRGRFPYHFVEVLACAGGCLNGRGQAQTEDGRADRALLQRMRGVH--- 403
Query: 354 VMLADPFKNP----LVRSLYDEWLEQPGSEKAKKHVHTEY 389
A P + P V+ LY EWL+ + +A+ +HT +
Sbjct: 404 --AAGPGRTPETSAHVQDLYREWLDGADAPRARGTLHTAH 441
>gi|339233454|ref|XP_003381844.1| nuclear prelamin A recognition factor [Trichinella spiralis]
gi|316979294|gb|EFV62102.1| nuclear prelamin A recognition factor [Trichinella spiralis]
Length = 497
Score = 260 bits (665), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 154/409 (37%), Positives = 230/409 (56%), Gaps = 47/409 (11%)
Query: 1 MLEKQSLDEFLSNI----NKGKAV--------IISLSPQSRASLAEHFGISPLQVFKKLT 48
++E+Q EFL I N K + ++S+SPQSRASLA + ++ +KL
Sbjct: 107 LIEQQGPKEFLKMIEEFSNDNKVISKELKSLFVVSISPQSRASLAASYNLTVEVTQRKLC 166
Query: 49 TFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWIC 108
FL+SLG DT+ +R+ +L+ EF+ Y+++ + S S P++++ CPGW+C
Sbjct: 167 AFLRSLGADICLDTTFARNFSLLATAEEFVDYYRKNYLNCTSTSLSISPLITAICPGWVC 226
Query: 109 YAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAR 168
YAEK + ++P +S V+SPQ G+ +K ++ + + P+ I HVT+MPC+DKKLEA+R
Sbjct: 227 YAEKSVSDVVIPLMSKVRSPQAIAGSFVKDYLSKTMNILPNRIRHVTIMPCFDKKLEASR 286
Query: 169 EDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVD 228
F+ D+G EVD VL+T ++ ++ +E S L L ++
Sbjct: 287 SAFL----------ADDG-SSREVDLVLSTSDIYMIV---------IENSDL-LCLFDIF 325
Query: 229 DEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLL 287
DE LY GS SGGY E VF++AAK LF + +E+ RN D +E L + K L
Sbjct: 326 DENTLYNHEGSGSGGYLEFVFKYAAKELFNLDVSS-VEYVAQRNKDIQEARLIHDNKVLF 384
Query: 288 KFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK---PKPGQSPKELIK 344
ALCYGF+N+QN++RK++ KC Y FVEVMACPSGCLNGGGQI+ +EL
Sbjct: 385 HMALCYGFRNIQNLIRKIRAGKCAYHFVEVMACPSGCLNGGGQIRGIDKMTSNVVEELYH 444
Query: 345 TLETIYLENVMLADPFKNPLVRSLYDEWLEQP-GSEKAKKHVHTEYHPV 392
+L T+ P + P ++ L + WL SEKA + + T+Y V
Sbjct: 445 SLPTV--------QPGEWPNLKLLINRWLGGSLQSEKANRMLKTQYQAV 485
>gi|281204416|gb|EFA78611.1| nuclear prelamin A recognition factor-like protein [Polysphondylium
pallidum PN500]
Length = 431
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 155/393 (39%), Positives = 224/393 (56%), Gaps = 68/393 (17%)
Query: 1 MLEKQSLDEFLSNINKG-----------KAVIISLSPQSRASLAEHFGISPLQVFKKLTT 49
++ QS+ EF + +N K ++IS+SPQSRAS+A HF + V +KL
Sbjct: 83 LITAQSITEFQNVLNANTSSTTAVAIAKKTIVISISPQSRASIAAHFNLPIKIVQRKLEI 142
Query: 50 FLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWIC 108
K L +FD S R+ +L+E+ EF+AR+++ E N+ LPML SACPGWIC
Sbjct: 143 LFKRILNCDYVFDVSFGREFSLLESAAEFVARHRKQLE------NAPLPMLCSACPGWIC 196
Query: 109 YAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAR 168
YAEK G YILPYIS+ KSPQQ +G +K+++ +K
Sbjct: 197 YAEKSHGEYILPYISTTKSPQQIMGTLVKYYLGEKF------------------------ 232
Query: 169 EDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE-----SPLDKM 223
+ RD VD VL++ EVLDL++ K+++F LE+ P +M
Sbjct: 233 ---------LNKNSRD-------VDCVLSSSEVLDLLKEKSIDFVGLEDKEEEIDPQQQM 276
Query: 224 LTNVDDE-GHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 282
+D E G YGV GS+GGY E ++R+AAK LFG ++ +E++ RN+DF+E +L V+
Sbjct: 277 FRYLDSETGSPYGVEGSTGGYFEFLYRYAAKELFGVEVK-EIEYQVGRNTDFKEASLVVD 335
Query: 283 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKP--KPGQSPK 340
GK ++ FA YGF+N+QN+VRK+K+ K Y FVEVMACPSGC+NGGGQIK + + K
Sbjct: 336 GKKVMTFAKAYGFRNIQNVVRKIKIGKLPYDFVEVMACPSGCINGGGQIKAGSESLRDQK 395
Query: 341 ELIKTLETIYLENVMLADPFKNPLVRSLYDEWL 373
LI+ E Y E +L ++ + +Y +WL
Sbjct: 396 VLIQQAEDRYNEQQLLQPQ-QDQQINEIYKQWL 427
>gi|301612957|ref|XP_002935994.1| PREDICTED: nuclear prelamin A recognition factor [Xenopus
(Silurana) tropicalis]
Length = 370
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 129/335 (38%), Positives = 207/335 (61%), Gaps = 19/335 (5%)
Query: 53 SLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEK 112
+L V + DT+ + D +++E +FI R+++ ++ DE + PM +SACPGW+ YAE+
Sbjct: 39 ALRVHHVLDTTIAADFSILETQRDFIQRFRR--QTQDEHA---FPMFASACPGWVQYAER 93
Query: 113 QLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFV 172
LG + P+I + KSPQQ +G+ +K + PD+I+H+ V PCYD+KLEA R+D+
Sbjct: 94 VLGDSVTPHICTAKSPQQIMGSLVKGYFASSKNLSPDKIFHLMVAPCYDRKLEALRDDYY 153
Query: 173 FQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGH 232
+L +VD VLT+GEV+ +++ K ++ + +EE PL+ + E
Sbjct: 154 TEL-----------FNCRDVDCVLTSGEVMQIMEQKNISVKEMEEIPLENVFGETSFE-F 201
Query: 233 LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALC 292
+ SS GY VFRHAAK LF ++ + +K ++N DF EV+LE +G+T+L+FA
Sbjct: 202 VRHEGTSSDGYLAHVFRHAAKELFDMDVQ-EISYKALKNKDFLEVSLEKDGETVLRFAAA 260
Query: 293 YGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE 352
YGF+N+QN+V K++ K Y FVEV+ACP GCLNG GQ + G+ + L+ +E +Y
Sbjct: 261 YGFRNIQNMVLKLRKGKFHYHFVEVLACPGGCLNGKGQAQSTEGKVERALLHEMEEVYT- 319
Query: 353 NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 387
V + P NP +++LY++WL+ S+K ++ +HT
Sbjct: 320 RVPIQKPESNPHIQALYEDWLQGADSQKTRETLHT 354
>gi|335297201|ref|XP_003357967.1| PREDICTED: nuclear prelamin A recognition factor isoform 2 [Sus
scrofa]
Length = 407
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/381 (35%), Positives = 224/381 (58%), Gaps = 30/381 (7%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ ++ + + +S+ PQS A F +S ++L FLKSLGV +FD + + D +++E
Sbjct: 39 DASEHRVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKSLGVHYVFDATIAADFSILE 98
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EF+ R+ Q E + +LPML+SACPGW+ YAE+ LG + P++ + +SPQQ +
Sbjct: 99 SQKEFVRRFHQHSEEE-----PALPMLTSACPGWVRYAERVLGHPVTPHLCTARSPQQIM 153
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ +K + ++ D I+HV V PCYD+KLEA +ED + + +R
Sbjct: 154 GSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQED----VPTASPGFRG-------T 202
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLT+GE+ +++ ++ + ++ LD + +V +E + A S G A +FRHAA
Sbjct: 203 DCVLTSGEIAQMMEQSDLS---VRDAALDTLFGDVREEVRRHDGASSDGCLAH-IFRHAA 258
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LF + + G L ++ +RN DF+EV LE GK LL+FA YGF+N+QN+V K+K + Y
Sbjct: 259 KELFDEDV-GELTYRALRNRDFQEVTLEKSGKVLLRFAAAYGFRNIQNVVLKLKRGRFPY 317
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNP----LVRSL 368
FVEV+AC GCLNG GQ + + G++ + L++ + ++ A P + P V+ L
Sbjct: 318 HFVEVLACAGGCLNGRGQAQTEDGRADRALLQRMRGVH-----AAGPGRTPETSAHVQDL 372
Query: 369 YDEWLEQPGSEKAKKHVHTEY 389
Y EWL+ + +A+ +HT +
Sbjct: 373 YREWLDGADAPRARGTLHTAH 393
>gi|351706449|gb|EHB09368.1| Nuclear prelamin A recognition factor [Heterocephalus glaber]
Length = 506
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 152/453 (33%), Positives = 238/453 (52%), Gaps = 70/453 (15%)
Query: 2 LEKQSLDEFLS--NINKG------KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +Q+ +F N+NK K +++S+ PQS A +S ++L FLKS
Sbjct: 73 LSQQNAKDFFRVLNLNKKCDTSEHKVLVVSVCPQSLPYFAAKLNLSVTDASRRLCGFLKS 132
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQS----------------------------- 84
LGV +FD + + D +++E+ EF+ RY Q
Sbjct: 133 LGVHYVFDMAIAADFSILESQKEFVRRYHQHSDEQRALPMLTSACPGVHYVFDMAIAADF 192
Query: 85 --------------QESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 130
Q SD++R+ LPML+SACPGW+ YAE+ LG + P++ + KSPQQ
Sbjct: 193 SILESQKEFVRRYHQHSDEQRA---LPMLTSACPGWVRYAERVLGHPVTPHLCTAKSPQQ 249
Query: 131 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 190
+G+ +K + ++ P++I+HV V PCYDKKLEA +E F L + T
Sbjct: 250 VMGSLVKDYFAKQQNLPPEKIFHVVVAPCYDKKLEALQEGFSTALPGAQGT--------- 300
Query: 191 EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH 250
D VLT+GE+ +++ ++ ++++ +D + + + S G+ VFRH
Sbjct: 301 --DCVLTSGEITQMMEQSDLS---VKDAAVDTLFRDAKEAVVRRHDGTGSDGHLAHVFRH 355
Query: 251 AAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
AAK LF + +E + + +RN DF+EV LE G+ LL+FA YGF+N+QN+V K++ K
Sbjct: 356 AAKELFNEHVE-EITYCALRNKDFQEVTLEKNGEVLLRFAAAYGFRNVQNLVLKLRKGKF 414
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYD 370
Y FVEV+ACP GCLNG GQ + + G + K +++ +E IY ++ + P + V+ LY
Sbjct: 415 PYHFVEVLACPGGCLNGRGQAQTEHGHTDKFVLRQMEGIY-ADIPVQPPESSAHVQELYQ 473
Query: 371 EWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
EWLE S KA++ +HT Y + A W
Sbjct: 474 EWLEGTDSLKAQEALHTSYQSPERCTAALDMKW 506
>gi|14165461|ref|NP_114174.1| nuclear prelamin A recognition factor isoform b [Homo sapiens]
gi|12653339|gb|AAH00438.1| NARF protein [Homo sapiens]
gi|312152386|gb|ADQ32705.1| nuclear prelamin A recognition factor [synthetic construct]
Length = 502
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 151/431 (35%), Positives = 238/431 (55%), Gaps = 51/431 (11%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +Q+ +F +N K K +++S+ PQS A F +S ++L FLKS
Sbjct: 68 LSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKS 127
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT+ + D +++E+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+
Sbjct: 128 LGVHYVFDTTIAADFSILESQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERV 182
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE---- 169
LG I ++ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA +E
Sbjct: 183 LGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPP 242
Query: 170 --------DFVFQ------------LDSQEETYRDEGLE----------IPEVDSVLTTG 199
D V + + E E LE I +DS L G
Sbjct: 243 ALHGSRGADCVLTSEISQAWWCTPVITATREAAARESLEPGRQRLQRDKIAPLDSSLGGG 302
Query: 200 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV 259
++ Q+ ++ ++ +D + ++ ++ SS G+ +FRHAAK LF +
Sbjct: 303 G--EIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNED 360
Query: 260 IEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMA 319
+E + ++ +RN DF+EV LE G+ +L+FA YGF+N+QN++ K+K K + FVEV+A
Sbjct: 361 VE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLA 419
Query: 320 CPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSE 379
C GCLNG GQ + G + K L++ +E IY ++ + P + V+ LY EWLE S
Sbjct: 420 CAGGCLNGRGQAQTPDGHADKALLRQMEGIYA-DIPVRRPESSAHVQELYQEWLEGINSP 478
Query: 380 KAKKHVHTEYH 390
KA++ +HT Y
Sbjct: 479 KAREVLHTTYQ 489
>gi|321470135|gb|EFX81112.1| hypothetical protein DAPPUDRAFT_211441 [Daphnia pulex]
Length = 480
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 143/384 (37%), Positives = 218/384 (56%), Gaps = 21/384 (5%)
Query: 20 VIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
+++ LS Q S A F +SP++ KL+ + LG +FD D+ L+E ++F+
Sbjct: 118 IVVGLSSQPILSFANKFQVSPIEARAKLSALFRQLGAAKVFDVESFADMCLVECGHDFVQ 177
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
R+++ + +S+P+L+SACPGWICYAEK GS+ILP+IS VKSPQQ IK
Sbjct: 178 RFREKS-----TNATSVPVLASACPGWICYAEKTHGSWILPHISEVKSPQQIAATFIKDL 232
Query: 140 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
+ +L + V +MPC+DKKLEA+R DF+ E + +VD V+T
Sbjct: 233 LPNELQTDASRLAVVMIMPCFDKKLEASRSDFL-----------REDQQTKDVDFVITPV 281
Query: 200 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV 259
E+ +++ V F L+ S +D + ++ +G SGGYAE V R AAK L+
Sbjct: 282 EIEQILEELDVEFTDLDSSHVDHLSKAEIPTWNIPSGSG-SGGYAEHVLRFAAKELYDVT 340
Query: 260 IEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMA 319
+E H+ F+ ++NSD RE LE++G+ +L A+C GF+N+QN+V+K+K +K Y +VEVMA
Sbjct: 341 LE-HITFQPVKNSDIREAFLEMDGQQVLSVAICNGFRNIQNLVQKMKRKKRTYDYVEVMA 399
Query: 320 CPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSE 379
CPSGCLNGG Q++ + ++ K L+ LE ++ + + L WL + E
Sbjct: 400 CPSGCLNGGAQLRLESNET-KILLSNLEILHTK--IEKHDIDETKADDLCHAWLGKSSIE 456
Query: 380 KAKKHVHTEYHPVVKSITAQLHNW 403
+ K + T YH V KS A W
Sbjct: 457 ERLKRLRTNYHAVQKSTNALTVKW 480
>gi|344250196|gb|EGW06300.1| Nuclear prelamin A recognition factor [Cricetulus griseus]
Length = 331
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 132/335 (39%), Positives = 204/335 (60%), Gaps = 22/335 (6%)
Query: 56 VKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLG 115
V +FDT+ + D +++E+ EF+ RY + E E LPML+SACPGW+ YAE+ LG
Sbjct: 4 VHYVFDTTIAADFSILESQKEFVRRYHRHSEEQRE-----LPMLTSACPGWVRYAERVLG 58
Query: 116 SYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL 175
++P++ + KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA RE L
Sbjct: 59 RPVIPHLCTAKSPQQIMGSLVKDYFARQQNLSPEKIFHVVVAPCYDKKLEALREGLSTTL 118
Query: 176 DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG 235
+ T D VLT+GE+ +++ + +++++ +D + +V +E ++
Sbjct: 119 NGARGT-----------DCVLTSGEIAQIMEQSDL---SVKDTAVDTLFGDVKEEVAVWR 164
Query: 236 VAG-SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYG 294
G SS G+ VFRHAAK LFG+ IE + ++ +RN DF EV LE G+ LL+FA YG
Sbjct: 165 HDGVSSDGHLAHVFRHAAKELFGEHIE-EINYRALRNKDFHEVTLEKNGEVLLRFAAAYG 223
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV 354
F+N+QN++ K+K K Y FVEV+ACP GCLNG GQ + + G + + L++ +E IY +
Sbjct: 224 FRNIQNMILKLKKGKFPYHFVEVLACPRGCLNGRGQAQTEDGHTDRALLQQMEGIY-SGI 282
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ P + V LY +WLE S K ++ +HT Y
Sbjct: 283 PVRPPESSAHVEELYQQWLEGTESPKVQEVLHTTY 317
>gi|328773770|gb|EGF83807.1| hypothetical protein BATDEDRAFT_21296 [Batrachochytrium
dendrobatidis JAM81]
Length = 556
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 174/495 (35%), Positives = 247/495 (49%), Gaps = 121/495 (24%)
Query: 1 MLEKQSLDEFLSNINKGKA--------VIISLSPQSRASLAEHFGISPLQVFKKLTTFLK 52
++ +QS E + I A + IS+ PQSRASLA + ++ Q+ ++LT F K
Sbjct: 84 LITQQSHKEIYNTIEANSALAKDQRAQICISICPQSRASLAAKYNLTTRQIRRRLTWFFK 143
Query: 53 S-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL----PMLSSACPGWI 107
+ + DT+ SRD L+E+ +EF+ RYK RS++SL PM++SACPGWI
Sbjct: 144 DHFKMDHVLDTAFSRDFALLESAHEFVRRYKA-------RSDTSLLQHMPMITSACPGWI 196
Query: 108 CYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAA 167
CYAEK S ILP I + KSPQQ +G+ +K + +L PD IYH+TVMPCYDKKLEA+
Sbjct: 197 CYAEKT-HSAILPLIDTTKSPQQIMGSLVKDYYANQLNVNPDRIYHITVMPCYDKKLEAS 255
Query: 168 REDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNV 227
R+DF + Y+ +VD V++TGEV +IQ + ++ ++E+ D +
Sbjct: 256 RQDFY------NDIYKTR-----DVDCVISTGEVERMIQEEGLDISTMQETEEDLIFG-- 302
Query: 228 DDEGHLYGVAGSSGGYAETVFRHAAKTLFG------KVIEGHLEFKTI--RNSDFREVAL 279
H SSGGY V R +AK LFG + EG + RN D +V
Sbjct: 303 ---AHGRSEGSSSGGYLAYVMRFSAKALFGVDLTPLDIQEGTNGITIVAGRNPDSTDVLF 359
Query: 280 EVEG--KTLLKFALCYGFQNLQNIVRKVK-------------------MRKCDYQFVEVM 318
G + L+FA YGF+N+QN++RKVK + Y +VEVM
Sbjct: 360 TPPGFDEPALRFAYSYGFRNIQNLIRKVKPGKPATTLLNPRRVRSSTALASGKYNYVEVM 419
Query: 319 ACPSGCLNGGGQIKPKP----------------------------GQSP----------- 339
ACPSGC+NGGGQ+KP+P Q P
Sbjct: 420 ACPSGCINGGGQLKPEPQLKSEKTQTFESKDSVNTIELDLEIQSTAQPPLIESTASASSL 479
Query: 340 --------KELIKTLETIYL---ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 388
K+ I E++Y E++ L P N +++ LY EWL +EK++K +HT
Sbjct: 480 TTDGTLSGKQWISRAESMYRSADESIEL--PETNAVIKRLYAEWLGGEDTEKSRKMLHTG 537
Query: 389 YH---PVVKSITAQL 400
YH P+ S TA L
Sbjct: 538 YHSVEPLTSSTTAGL 552
>gi|326427053|gb|EGD72623.1| hypothetical protein PTSG_04358 [Salpingoeca sp. ATCC 50818]
Length = 528
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 203/335 (60%), Gaps = 22/335 (6%)
Query: 1 MLEKQS---LDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVK 57
++EKQ+ L+ + N +G V + +S QS ASLA F IS ++ ++L TF KS+GV
Sbjct: 112 LIEKQNHKELENAVQNKKEGSLVCVCISQQSYASLAVRFDISAVEACQRLVTFFKSIGVD 171
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FD + R + L E+ E ++R + E S +P+L+S+CPGWICYAEK
Sbjct: 172 YVFDVTVGRSIALRESARELVSRVRNPME------GSPVPVLASSCPGWICYAEK-THPE 224
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
LP+IS VKSPQQ +GA +K+H +LG +P +++ V VMPC+DKKLEA+R+DF
Sbjct: 225 ALPFISKVKSPQQIMGALVKYHFAPQLGVKPQDVFMVAVMPCFDKKLEASRQDFY----- 279
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
+ YR +VD V+ + EV +++ + + +E LD +L + + V
Sbjct: 280 -SDIYRTR-----DVDCVIVSHEVETMLEERKLRLNDVEMGQLDSVLRPGHFDQVVGHVG 333
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQN 297
SGGY V +AA+ L G V +E + R D+++ + V+GK +LK A YGF+N
Sbjct: 334 SGSGGYLHHVLLYAARELHG-VEMSEVEMVSRRGEDYKDTQVCVDGKPVLKMATAYGFRN 392
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK 332
+QNI+R+VK KC YQ+VE+MACP GC+NGGGQI+
Sbjct: 393 IQNIIRRVKRNKCPYQYVEIMACPKGCVNGGGQIR 427
>gi|167518139|ref|XP_001743410.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778509|gb|EDQ92124.1| predicted protein [Monosiga brevicollis MX1]
Length = 476
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 149/417 (35%), Positives = 224/417 (53%), Gaps = 49/417 (11%)
Query: 4 KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTS 63
+++L E +N G V++ L+ Q AS+A +G+S K++T+L+ LGV +++D S
Sbjct: 92 RRALREKATN---GTTVVVMLAQQVYASMAAKYGLSSHAALFKISTYLRQLGVDAVYDVS 148
Query: 64 CSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYIS 123
+R + L R Q + S ++ P+LSSACPGWICYAEK GSYILP+IS
Sbjct: 149 IARSIAL---------RQVQQEYSHRRQTGGVFPILSSACPGWICYAEKSHGSYILPHIS 199
Query: 124 SVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYR 183
+VKSPQQ +G+ +K I ++ G RPD+++ +MPC+DKKLEA+R DF Y
Sbjct: 200 TVKSPQQIMGSMLKRIIPRQNGVRPDQVFVTAIMPCFDKKLEASRSDF----------YS 249
Query: 184 DEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGH-LYGVAGSSGG 242
DE L +VD V+ E+ ++ V+ + ESPLD ++ D G L + +SGG
Sbjct: 250 DE-LRTKDVDCVIAATELEIMLLEDDVDLSQVPESPLDSLVPG--DTGEPLSHIGSTSGG 306
Query: 243 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIV 302
Y V AA F L + R DF+E + + FAL YGF+++Q+++
Sbjct: 307 YLHHVVERAADAPFAS-----LPLEAKRGVDFQEASCQDAQGQTRTFALGYGFKSIQSVL 361
Query: 303 RKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK----------PGQSPKELIKTLETIYLE 352
R++K + C Y +VEVMACP GC NGGGQ++P+ + L+ E Y E
Sbjct: 362 RRIKRKNCSYDYVEVMACPRGCTNGGGQLRPEEVGNSASAVSSQAARDALLTETERTYDE 421
Query: 353 -NVMLADPFKNPLVRSLYDEWLEQPG-----SEKAKKHVHTEYHPVVKSITAQLHNW 403
+ AD ++ V+++Y PG S + + HT YH V S+ QL W
Sbjct: 422 IRRIRAD--EDVRVQAVYAALQLTPGTNGLLSPEEQALFHTAYHKVETSMPPQLEAW 476
>gi|344291276|ref|XP_003417362.1| PREDICTED: nuclear prelamin A recognition factor-like [Loxodonta
africana]
Length = 572
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 138/377 (36%), Positives = 216/377 (57%), Gaps = 31/377 (8%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+ ++ + + +S+ PQS A F +S ++L FLKSLGV+ +FDT+ + D +++E
Sbjct: 39 DTSEHRVLAVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLGVRYVFDTTIAADFSILE 98
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+ EF+ RY E +LPML+SACPGW+ YAE+ LG+ P + ++
Sbjct: 99 SQKEFVRRYLGHSED-----KQALPMLTSACPGWVRYAERVLGTLCAPVPTGYSFRPISL 153
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
+ PD I+HV V PCYDKKLEA RED Q ++ +G V
Sbjct: 154 SPNLS----------PDGIFHVIVGPCYDKKLEALREDV------QAASHTSQG-----V 192
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLT+GE+L +++ ++ ++E+ +D + ++ +E SS GY VFRHAA
Sbjct: 193 DCVLTSGELLQIMEQSELS---VKEAAVDTLFGDLKEEEVRRHDGASSDGYLAHVFRHAA 249
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K LFG+ +E + + +RN DF+EV LE EG+ +L+FA YGF+N+QN++ K+K K Y
Sbjct: 250 KELFGEDVE-KVTCRALRNKDFQEVTLEKEGEVVLRFAAVYGFRNIQNMILKLKKGKFPY 308
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVEV+ACP GCL+G GQ + + G K L++ +E IY ++ + P + V+ LY EW
Sbjct: 309 HFVEVLACPGGCLHGRGQAQAEDGHVDKALLRQMEGIY-ADIPVRPPETSEHVQMLYREW 367
Query: 373 LEQPGSEKAKKHVHTEY 389
L + ++ +HT +
Sbjct: 368 LHGADPPRVQEALHTSF 384
>gi|332260436|ref|XP_003279295.1| PREDICTED: LOW QUALITY PROTEIN: nuclear prelamin A recognition
factor [Nomascus leucogenys]
Length = 443
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 223/396 (56%), Gaps = 42/396 (10%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +Q+ +F +N K K +++S+ PQS A F +S ++L FLKS
Sbjct: 68 LSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKS 127
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
LGV +FDT+ + D +++E+ EF+ RY+Q S++ER+ LPML+SACPGW+ YAE+
Sbjct: 128 LGVHYVFDTTIAADFSILESQKEFVRRYRQ--HSEEERT---LPMLTSACPGWVRYAERV 182
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
LG I ++ + +SPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA +E
Sbjct: 183 LGCPITAHLCTARSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPP 242
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
L D VLT+GE+ +++ + +++++ +D + ++ ++
Sbjct: 243 ALHGSR-----------GADCVLTSGEIAQIMEQGDL---SVKDAAVDTLFGDLKEDKVT 288
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
SS G+ +FRHAAK LF + +E + ++ +RN DF+EV LE G+ +L+FA Y
Sbjct: 289 RHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAY 347
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
GF+N ++ + +AC + CLNG GQ + G + K L++ +E IY +
Sbjct: 348 GFRN-------------EFHHIGTLACAARCLNGRGQAQTPDGHADKALLRQMEGIYA-D 393
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 394 IPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 429
>gi|290562579|gb|ADD38685.1| Probable cytosolic Fe-S cluster assembly factor GL21135
[Lepeophtheirus salmonis]
Length = 446
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 150/409 (36%), Positives = 213/409 (52%), Gaps = 40/409 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKA---VIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGV 56
++E QS DE +KGK +I+S+S QS SL+ FG+S Q + + KSLGV
Sbjct: 72 LVEAQSSDELRKRFQSKGKVYDVLIVSVSTQSLISLSNKFGLSLSQTSNVIINYFKSLGV 131
Query: 57 KSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGS 116
I++ D+ L E E I Q + P+L+S+CPGWICYAEK G
Sbjct: 132 DYIYNLKICEDIALQEQSIETILHLSQGNKG---------PILTSSCPGWICYAEKTHGD 182
Query: 117 YILPYISSVKSPQQTIGATIKHHICQKL-GFRPDEIYHVTVMPCYDKKLEAAREDFVFQL 175
+ILPYIS VKSPQQ +GA +K + I HVTVMPC+DKKLEA+R DF +
Sbjct: 183 WILPYISKVKSPQQIMGALVKSWGANNIYNTESTRICHVTVMPCFDKKLEASRRDF---M 239
Query: 176 DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES-PLDKMLTNVDDEGHLY 234
DS IP+VD V T+ E+ +I + + ES DK+ + +E +
Sbjct: 240 DSNN---------IPDVDLVTTSVELEQMILADNFSLHDIPESYAFDKIFESCSNELEVN 290
Query: 235 GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYG 294
+GS GG+ E++F K+LF + L++ +N DF E+ E G+ + F + G
Sbjct: 291 HGSGS-GGFCESIFLDTIKSLFDDN-DPSLDYNMRKNLDFMELKYEKNGRKI-HFGVANG 347
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV 354
F+N+QNIV+ +K +KCD+ F+E+MACPSGCLNGG Q P+ + K I T++ +Y
Sbjct: 348 FRNIQNIVQMLKRKKCDFDFIEIMACPSGCLNGGAQAVPEDIDN-KVFISTIKELYNSLP 406
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
N L + LY E K +T YH + K W
Sbjct: 407 KTRSSNNNSLPKDLYSE---------LKPLFYTNYHAIPKETNGLTIEW 446
>gi|170092281|ref|XP_001877362.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647221|gb|EDR11465.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 494
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 149/368 (40%), Positives = 208/368 (56%), Gaps = 34/368 (9%)
Query: 18 KAVIISLSPQSRASLAEHFG------ISPLQVFKKLTTFLKS-LGVKSIFDTSCSRDLTL 70
K +IS++PQS ASLA I+P QV +++ F K+ LG +FDT+ +R L L
Sbjct: 115 KIPVISIAPQSLASLAASLSHSSPTPITPRQVLRRVELFCKNVLGFAHVFDTTFARHLAL 174
Query: 71 IEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 130
E EF R + Q + E + LPML+SACPGWICYAEK S +LP+I++ KSPQQ
Sbjct: 175 REHVAEFEERRLKDQ-AGGEDAVGQLPMLASACPGWICYAEKA-HSEMLPFIATTKSPQQ 232
Query: 131 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 190
+G +K + K G P ++YHV+VMPCYDKKLEA+R+DF ETY
Sbjct: 233 VMGTLVKEWMGAKWGKLPQDVYHVSVMPCYDKKLEASRQDFY------NETYSTR----- 281
Query: 191 EVDSVLTTGEVLDLIQLKAVNF---EALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETV 247
+VD V+TTGE+ +++ K N L+++P ++ D L SSG Y +++
Sbjct: 282 DVDCVITTGELELMMREKEWNLSLPRELDDAPWQSSSSSFDLPELLQHPGSSSGSYLQSI 341
Query: 248 FRHAAKTLFGKVIEGHLEFKTIRNSDFRE-VALEV-EGKTLLKFALCYGFQNLQNIVRKV 305
H + I L KT+RN+D+ E V EV G + K A CYGF+NLQN+VRK
Sbjct: 342 VSHLTAS---SSIPLQLSVKTLRNADYEEHVLTEVGSGNIVFKGAKCYGFRNLQNVVRKT 398
Query: 306 KMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN-----VMLADPF 360
+ Y ++EVMACP GC+NGGGQ+K P KE + +E +Y ++ V LAD
Sbjct: 399 QHSGRSYDYIEVMACPGGCVNGGGQLK-VPAWGDKEWTRKVEEVYWDDRTPAAVELADRM 457
Query: 361 KNPLVRSL 368
+ R L
Sbjct: 458 TELVHREL 465
>gi|290463009|gb|ADD24552.1| Probable cytosolic Fe-S cluster assembly factor GL21135
[Lepeophtheirus salmonis]
Length = 449
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 149/409 (36%), Positives = 212/409 (51%), Gaps = 40/409 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKA---VIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGV 56
++E QS DE +KGK +I+S+S QS SL+ FG+S Q + + KSLGV
Sbjct: 75 LVEAQSSDELRKRFQSKGKVYDVLIVSVSTQSLISLSNKFGLSLSQTSNVIINYFKSLGV 134
Query: 57 KSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGS 116
I++ D+ L E E I Q + P+L+S+CPGWICYAEK G
Sbjct: 135 DYIYNLKICEDIALQEQSIETILHLSQGNKG---------PILTSSCPGWICYAEKTHGD 185
Query: 117 YILPYISSVKSPQQTIGATIKHHICQKL-GFRPDEIYHVTVMPCYDKKLEAAREDFVFQL 175
+ILPYIS VKSPQQ +GA +K + I HVTVMPC+DKKLEA+R DF +
Sbjct: 186 WILPYISKVKSPQQIMGALVKSWGANNIYNTESTRICHVTVMPCFDKKLEASRRDF---M 242
Query: 176 DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES-PLDKMLTNVDDEGHLY 234
DS IP+VD T+ E+ +I + + ES DK+ + +E +
Sbjct: 243 DSNN---------IPDVDLATTSVELEQMILADNFSLHDIPESYAFDKIFESCSNELEVN 293
Query: 235 GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYG 294
+GS GG+ E++F K+LF + L++ +N DF E+ E G+ + F + G
Sbjct: 294 HGSGS-GGFCESIFLDTIKSLFDDN-DPSLDYNMRKNLDFMELKYEKNGRKI-HFGVANG 350
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV 354
F+N+QNIV+ +K +KCD+ F+E+MACPSGCLNGG Q P+ + K I T++ +Y
Sbjct: 351 FRNIQNIVQMLKRKKCDFDFIEIMACPSGCLNGGAQAVPEDIDN-KVFISTIKELYNSLP 409
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
N L + LY E K +T YH + K W
Sbjct: 410 KTRSSNNNSLPKDLYSEL---------KPLFYTNYHAIPKETNGLTIEW 449
>gi|426197521|gb|EKV47448.1| hypothetical protein AGABI2DRAFT_185390 [Agaricus bisporus var.
bisporus H97]
Length = 590
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 166/500 (33%), Positives = 238/500 (47%), Gaps = 122/500 (24%)
Query: 11 LSNINKGKAVIISLSPQSRASLAEHFG-------ISPLQVFKKLTTFLKS-LGVKSIFDT 62
LSN + + IIS++PQS ASLA + ++P ++F+++ TF S LG +FDT
Sbjct: 106 LSNPSDERIPIISIAPQSLASLAAAYSQHNPSELLTPREIFRRIRTFCTSILGFAYVFDT 165
Query: 63 SCSRDLTLIEACNEFIARYKQS-QESDDERS----NSSLPMLSSACPGWICYAEKQLGSY 117
+ +R ++L E EFI R +Q + DD+ S + +LPML+SACPGWICYAEK
Sbjct: 166 NFARHISLNEHVKEFIERREQHLAKGDDDGSPRSPSETLPMLASACPGWICYAEKAH-PE 224
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+LP+I+ KSPQQ +G +K I ++LG +P+EIYHV+VMPCYDKKLEA+R+DF
Sbjct: 225 MLPFIARTKSPQQVMGTLVKKWIGKRLGKQPNEIYHVSVMPCYDKKLEASRQDFF----- 279
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD---------KMLTNVD 228
D+ + +VD V+TTGE+ +++ + + +SP D K LT+
Sbjct: 280 ------DDIFQTRDVDCVVTTGELELMMKEFGWDLKTSSQSPSDLTTSRSIPLKDLTSAR 333
Query: 229 -----DEGHLYGVAG-SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL--- 279
D L +G SSG Y ++ RH +T + L KT+RNSD+ E L
Sbjct: 334 RHPGIDLPELVTHSGTSSGSYLHSILRHLTET---SPVPLMLSVKTVRNSDYEEYVLRES 390
Query: 280 ------EVEGKTLLKFALCYGFQNLQNIVRKV---------------------------K 306
+ GK + K A CYGF+NLQN+VRKV +
Sbjct: 391 APSLSGDAVGKVIFKGAKCYGFRNLQNVVRKVGRERGVRVGSGAAGRLGAPGGAGKGVRR 450
Query: 307 MRKC-----------------DYQFVEVMACPSGCLNGGGQIKPKPGQS----------- 338
+R Y +VEVMACP GC+NGGGQ+KP G S
Sbjct: 451 LRAARKGQGGEGGAPGGDGERKYDYVEVMACPGGCVNGGGQLKPPDGTSLDAEGYQRDWD 510
Query: 339 -------------PKELIKTLETIYLENVMLADPFKNP--LVRSLYDEWLEQPGSEKAKK 383
K K +E Y + D ++ + + +E E G + K
Sbjct: 511 GEGAIPSASAKWGDKGWTKKVEEAYWRDTGRVDAERSADQVADGIVEELWEAYGDSEKKG 570
Query: 384 HVHTEYHPVVKSITAQLHNW 403
TEY V + W
Sbjct: 571 LFRTEYRAVESDVVGLAVKW 590
>gi|409080606|gb|EKM80966.1| hypothetical protein AGABI1DRAFT_119505 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 591
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 168/501 (33%), Positives = 238/501 (47%), Gaps = 123/501 (24%)
Query: 11 LSNINKGKAVIISLSPQSRASLAEHFG-------ISPLQVFKKLTTFLKS-LGVKSIFDT 62
LSN + IIS++PQS ASLA + ++P ++F+++ TF S LG +FDT
Sbjct: 106 LSNPTDERIPIISIAPQSLASLAAAYSQHNSSELLTPREIFRRIRTFCTSILGFAYVFDT 165
Query: 63 SCSRDLTLIEACNEFIARYKQS-QESDDE---RSNS-SLPMLSSACPGWICYAEKQLGSY 117
+ +R ++L E EFI R +Q + DD+ RS S +LPML+SACPGWICYAEK
Sbjct: 166 NFARHISLNEHVKEFIERREQHLAKGDDDGLPRSPSETLPMLASACPGWICYAEKAH-PE 224
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+LP+I+ KSPQQ +G +K I ++LG +P+EIYHV+VMPCYDKKLEA+R+DF
Sbjct: 225 MLPFIARTKSPQQVMGTLVKKWIGRRLGKQPNEIYHVSVMPCYDKKLEASRQDFF----- 279
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD---------KMLTNVD 228
D+ + +VD V+TTGE+ +++ + + +SP D K LT+
Sbjct: 280 ------DDIFQTRDVDCVVTTGELELMMKEFGWDLKTSSQSPSDLTTSRSIPLKDLTSAR 333
Query: 229 -----DEGHLYGVAG-SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL--- 279
D L +G SSG Y ++ RH +T + L KT+RNSD+ E L
Sbjct: 334 RHPGIDLPELVTHSGTSSGSYLPSILRHLTET---SPVPLMLSVKTVRNSDYEEYVLRES 390
Query: 280 ------EVEGKTLLKFALCYGFQNLQNIVRKV---------------------------K 306
+ GK + K A CYGF+NLQN+VRKV +
Sbjct: 391 APSSSGDAVGKVIFKGAKCYGFRNLQNVVRKVGRERGVRVGSGAAGRLGAPGGAGKGVRR 450
Query: 307 MRKC------------------DYQFVEVMACPSGCLNGGGQIKPKPGQS---------- 338
+R Y +VEVMACP GC+NGGGQ+KP G S
Sbjct: 451 LRAVRKGQGGEGGAPGGDGEERKYDYVEVMACPGGCVNGGGQLKPPDGTSLDAEGYQRDW 510
Query: 339 --------------PKELIKTLETIYLENVMLADPFKNP--LVRSLYDEWLEQPGSEKAK 382
K K +E Y + D ++ + + +E E G + K
Sbjct: 511 DGEGAIPSASAKWGDKGWTKKVEEAYWRDTGRVDAERSADQVADGIVEELWEAYGDSEKK 570
Query: 383 KHVHTEYHPVVKSITAQLHNW 403
TEY V + W
Sbjct: 571 GLFRTEYRAVESDVVGLAVKW 591
>gi|169847095|ref|XP_001830259.1| nuclear prelamin A recognition factor-like protein [Coprinopsis
cinerea okayama7#130]
gi|116508511|gb|EAU91406.1| nuclear prelamin A recognition factor-like protein [Coprinopsis
cinerea okayama7#130]
Length = 748
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 145/375 (38%), Positives = 195/375 (52%), Gaps = 75/375 (20%)
Query: 18 KAVIISLSPQSRASLAEHFG-------ISPLQVFKKLTTFLK-SLGVKSIFDTSCSRDLT 69
K +++S++PQS ASLA +PLQV +++ F K +LG +FDT+ +R L+
Sbjct: 129 KLLVLSIAPQSLASLAASLTARFPQALTTPLQVLRRVRAFCKETLGFSEVFDTTFARHLS 188
Query: 70 LIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQ 129
L E EF R K+ + E + LPML+SACPGWICYAEK +LP+IS KSPQ
Sbjct: 189 LREHVLEFEERKKKDSQGGQE-AEGQLPMLASACPGWICYAEKAHAG-MLPFISRTKSPQ 246
Query: 130 QTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEI 189
Q +G +K + QK +PD IYHV+VMPCYDKKLEA+R+DF + S RD
Sbjct: 247 QVMGTLVKEWMAQKWNKKPDGIYHVSVMPCYDKKLEASRQDFYNDVYST----RD----- 297
Query: 190 PEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGV----AGSSGGYAE 245
VD V+TTGE+ +++ K + LD+ T+ D HL + SSG Y +
Sbjct: 298 --VDCVITTGELELMMKEKDWDISKSVPHELDEQQTSPSDAIHLPELIQHPGSSSGSYLQ 355
Query: 246 TVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL--EVEGKTLLKFALCYGFQNLQNIVR 303
++ H +T + L K +RN+D+ E L E GK + K A CYGF+NLQNIVR
Sbjct: 356 SIIDHVTET---SPVTLALNTKLMRNADYEEFTLAEEASGKIVFKGAKCYGFRNLQNIVR 412
Query: 304 KVKMRKC---------------------------------------------DYQFVEVM 318
KV K Y +VEVM
Sbjct: 413 KVGRDKGVRLGGGAAGKLGGKATGGVGRRIARRKGADAAAGGGSGEASAANRQYDYVEVM 472
Query: 319 ACPSGCLNGGGQIKP 333
ACPSGC+NGGGQ+KP
Sbjct: 473 ACPSGCVNGGGQLKP 487
>gi|345311184|ref|XP_001519777.2| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like,
partial [Ornithorhynchus anatinus]
Length = 382
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 144/409 (35%), Positives = 211/409 (51%), Gaps = 57/409 (13%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K V++S+SPQSRASL F ++PL+ +KLT F +SLGV +FDT+ SR+ +L+E+ EF
Sbjct: 8 KLVVVSISPQSRASLGARFELTPLETARKLTAFFQSLGVHHVFDTTFSRNFSLLESQREF 67
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPG---------------WICYAEKQLGSYILPYI 122
+AR+++ S+ +LPML+SACPG +C ++LG+ +
Sbjct: 68 VARFRRHSASE-----PALPMLASACPGGDEGPGRAELRRNPSGLC--AERLGTGVE-SE 119
Query: 123 SSVKSPQQTIGATIKHHICQKLGF------RPDEIYH--VTVMPCYDKKLEAAREDFVFQ 174
S + P + GF P IY V + P + + VF
Sbjct: 120 SVSRPPGGRSRIPLPPASSPDCGFDGATRQMPPRIYPSLVDISPPEFRAPARCLQAVVFP 179
Query: 175 LDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLY 234
EG+ +P++D +PLD + D+ +
Sbjct: 180 PGEVVRLLEQEGVSLPDLDP-----------------------APLDPTFGSGLDQEPIG 216
Query: 235 GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYG 294
G +GGY E VFRHAA+ LFG + G L +K ++N DF+EV LE +G LL AL YG
Sbjct: 217 HRGGGAGGYLEHVFRHAARELFGISV-GELTYKPLKNKDFQEVTLERDGSVLLHCALAYG 275
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV 354
F+N+QN+V+K+K K Y +VEVMACP+GCLNGGGQI+ G S ++L++ E Y
Sbjct: 276 FRNIQNVVQKLKRGKSPYHYVEVMACPAGCLNGGGQIR-DDGASGRDLMRRTEQQY-AAA 333
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
P +P VR LY +WL GSE+A + +HT YH + K+ + W
Sbjct: 334 RSEPPEAHPGVRELYAQWLGGEGSERAAQLLHTRYHALEKAGASFNIKW 382
>gi|325262533|ref|ZP_08129270.1| putative [Fe] hydrogenase, large subunit HymC [Clostridium sp. D5]
gi|324032365|gb|EGB93643.1| putative [Fe] hydrogenase, large subunit HymC [Clostridium sp. D5]
Length = 580
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 136/397 (34%), Positives = 206/397 (51%), Gaps = 37/397 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK +D+ L+ I ++ K VI+ +P RA+L E FG P+ V K+ L+ +G
Sbjct: 207 LYEKDFIDDVLAAIADESKHVIVQPAPSVRAALGEEFGY-PMGTDVEGKMAAALRRIGFD 265
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT S DLT++E +EF+ R + + LPM++S PGWI Y E
Sbjct: 266 KVFDTDFSADLTIMEEAHEFLGRVQ---------NGGVLPMMTSCSPGWIKYCEHYYPDQ 316
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
L ++SS KSPQQ GA K + +K+G P +I V+VMPC KK E R+D
Sbjct: 317 -LEHLSSCKSPQQMFGAIAKTYYAEKMGIDPKDIVCVSVMPCTAKKFEINRDD------- 368
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
+ +P+VD +TT E+ LI+ +NF +L + D L G ++G
Sbjct: 369 ------QDAAGVPDVDISITTRELARLIRKVGINFRSLPDEGFDDPLGESTGAGVIFG-- 420
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQ 296
++GG E R A +TL G+ + LEF +R ++ +E V G + K A+ G
Sbjct: 421 -ATGGVMEAALRTAVETLTGEEL-ASLEFNEVRGTEGIKEATYNVAGMDV-KVAVASGLS 477
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVML 356
N + I+ KV+ + DY F+E+M CP GC+NGGGQ + E ++ + L +
Sbjct: 478 NAKQIMDKVRAGEADYHFIEIMCCPGGCVNGGGQPQVHADVRNYEDVRAIRAKALYDNDK 537
Query: 357 ADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
A + NP ++ LYDE+L +PGSEKA +HT Y
Sbjct: 538 AKTLRKSHDNPSIKKLYDEFLGEPGSEKAHHILHTSY 574
>gi|343958306|dbj|BAK63008.1| nuclear prelamin A recognition factor isoform a [Pan troglodytes]
Length = 290
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 174/292 (59%), Gaps = 16/292 (5%)
Query: 98 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 157
ML+SACPGW+ YAE+ LG I ++ + KSPQQ +G+ +K + ++ P++I+HV V
Sbjct: 1 MLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVA 60
Query: 158 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 217
PCYDKKLEA +E L D VLT+GE+ +++ + ++ +
Sbjct: 61 PCYDKKLEALQESLPPALHGSRGA-----------DCVLTSGEIAQIMEQGDL---SVRD 106
Query: 218 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREV 277
+ +D + ++ ++ SS G+ +FRHAAK LF + +E + ++ +RN DF+EV
Sbjct: 107 AAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEV 165
Query: 278 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 337
LE G+ +L+FA YGF+N+QN++ K+K K + FVEV+AC GCLNG GQ + G
Sbjct: 166 TLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGH 225
Query: 338 SPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ K L++ +E IY ++ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 226 ADKALLRQMEGIY-ADIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 276
>gi|385809115|ref|YP_005845511.1| hydrogenase subunit HydA [Ignavibacterium album JCM 16511]
gi|383801163|gb|AFH48243.1| Hydrogenase subunit HydA [Ignavibacterium album JCM 16511]
Length = 575
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 139/395 (35%), Positives = 215/395 (54%), Gaps = 38/395 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK S+ E S + ++ K I ++P RAS+ E + + PL V L T L+ LG K
Sbjct: 204 LREKSSVKEVASALYDRKKYCIAQVAPAVRASIGEEYNM-PLGTDVTGLLVTGLRRLGFK 262
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT+ + DLT++E +E I R + + SLPM +S CPGW+ YAE
Sbjct: 263 KVFDTNFAADLTIMEEASELINRIQ---------NGGSLPMFTSCCPGWVKYAEMN-NPE 312
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
IL +IS+ KSP + GA +K + +K+G P +I+ V++MPC KK E+AR +
Sbjct: 313 ILDHISTCKSPHEMEGAVLKTYYAKKMGIDPKDIFVVSIMPCTVKKYESARPEL------ 366
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
+EE +P+VD+VLTT E++ ++ ++F L ES D L ++
Sbjct: 367 KEEV-------LPDVDAVLTTRELVRFFKIAGIDFNDLPESEFDNPLGESTGAAAIF--- 416
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQ 296
G+SGG E R A L GK ++ LEF+ IR + +E + + G + A+ G
Sbjct: 417 GTSGGVMEAALRTAYWKLTGKELD-KLEFEEIRGMEGVKEATVNINGMD-INIAVVNGIG 474
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENV 354
N++ IV +V K + F+EVMACP GC+NGGGQ Q P++++K ++ +Y EN
Sbjct: 475 NVKQIVEEVAAGKSKHHFIEVMACPGGCINGGGQ---PIHQKPEKVMKRVKVLYQIDENA 531
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+N V++LY E+ +P S KA + +HTEY
Sbjct: 532 KHRRSHENESVKTLYREFFGEPNSHKAHEILHTEY 566
>gi|426346277|ref|XP_004040806.1| PREDICTED: nuclear prelamin A recognition factor isoform 2 [Gorilla
gorilla gorilla]
Length = 290
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 174/292 (59%), Gaps = 16/292 (5%)
Query: 98 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 157
ML+SACPGW+ YAE+ LG I ++ + KSPQQ +G+ +K + ++ P++I+HV V
Sbjct: 1 MLTSACPGWVRYAERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVA 60
Query: 158 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE 217
PCYDKKLEA +E L D VLT+GE+ +++ + ++ +
Sbjct: 61 PCYDKKLEALQESLPPALHGSRGA-----------DCVLTSGEIAQIMEQGDL---SVRD 106
Query: 218 SPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREV 277
+ +D + ++ ++ SS G+ +FRHAAK LF + +E + ++ +RN DF+EV
Sbjct: 107 AAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVE-EVTYRALRNKDFQEV 165
Query: 278 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQ 337
LE G+ +L+FA YGF+N+QN++ K+K K + FVEV+AC GCLNG GQ + G
Sbjct: 166 TLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGH 225
Query: 338 SPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ K L++ +E IY ++ + P + V+ LY EWLE S KA++ +HT Y
Sbjct: 226 ADKALLRQMEGIY-ADIPVRRPESSAHVQELYQEWLEGINSPKAREVLHTTY 276
>gi|410052393|ref|XP_511766.4| PREDICTED: nuclear prelamin A recognition factor [Pan troglodytes]
Length = 691
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 136/446 (30%), Positives = 220/446 (49%), Gaps = 74/446 (16%)
Query: 2 LEKQSLDEFLSNIN--------KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS 53
L +Q+ +F +N K K +++S+ PQS A F +S ++L FLKS
Sbjct: 250 LSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKS 309
Query: 54 LGVKSIFDT----------------------SCS-----------------RDLTLIEAC 74
LGV +FDT SC R+ TL +
Sbjct: 310 LGVHYVFDTTIAANFXXXXCVQVSVGSGPKISCQVSKFCDVLMRSDWAVRLRERTL-QGR 368
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACP----------GWICYAEKQLGSYILPYISS 124
+ F + + D + + + + P GW+ YAE+ LG I ++ +
Sbjct: 369 SHFPVASRPAGSHDPQPGHRGWVLGPAQAPGADRGSLLSPGWVRYAERVLGRPITAHLCT 428
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
KSPQQ +G+ +K + ++ P++I+HV V PCYDKKLEA +E L
Sbjct: 429 AKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPPALHGSR----- 483
Query: 185 EGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYA 244
D VLT+GE+ +++ ++ + ++ +D + ++ ++ SS G+
Sbjct: 484 ------GADCVLTSGEIAQIMEQGDLS---VRDAAVDTLFGDLKEDKVTRHDGASSDGHL 534
Query: 245 ETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRK 304
+FRHAAK LF + +E + ++ +RN DF+EV LE G+ +L+FA YGF+N+QN++ K
Sbjct: 535 AHIFRHAAKELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILK 593
Query: 305 VKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPL 364
+K K + FVEV+AC GCLNG GQ + G + K L++ +E IY ++ + P +
Sbjct: 594 LKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIY-ADIPVRRPESSAH 652
Query: 365 VRSLYDEWLEQPGSEKAKKHVHTEYH 390
V+ LY EWLE S KA++ +HT Y
Sbjct: 653 VQELYQEWLEGINSPKAREVLHTTYQ 678
>gi|302389113|ref|YP_003824934.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Thermosediminibacter oceani DSM 16646]
gi|302199741|gb|ADL07311.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Thermosediminibacter oceani DSM 16646]
Length = 566
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 133/392 (33%), Positives = 212/392 (54%), Gaps = 41/392 (10%)
Query: 4 KQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVFKKL-TTFLKSLGVKSIFD 61
K +D+ +N K VI ++P R + E FG+ P + + L + LK++G +FD
Sbjct: 206 KSHIDKVWDALNDDNKVVIAQIAPAVRVAFGEAFGLRPGESTEYLIVSALKAMGFDMVFD 265
Query: 62 TSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPY 121
T + DLT+IE +EF+ R ++ + +LP+ +S CP W+ + E S+ L
Sbjct: 266 TCFAADLTVIEEGHEFLERLEKGE---------NLPLFTSCCPAWVKFVEFNYPSF-LNN 315
Query: 122 ISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEET 181
+SS +SP Q G+ K++ ++LG + +Y V++MPC KK EAARE+ +D
Sbjct: 316 LSSCRSPHQMFGSFTKNYYAKELGVSRENVYVVSIMPCTAKKAEAAREEL--GVDGN--- 370
Query: 182 YRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSG 241
P+VD+VLTT E++ +++ + F+ L+E P D G ++G ++G
Sbjct: 371 --------PDVDAVLTTRELIRMVREAGIVFKDLKEEPFDMPFGFSTGGGIIFG---ATG 419
Query: 242 GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQN 300
G AE V R TL G GH F+ +R S+ +E + +GK + + A+ +G +N +
Sbjct: 420 GVAEAVVR----TLDG----GHRRFEQVRGSEGLKEATIVKDGKEI-RVAVVHGLKNARE 470
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM-LADP 359
++ K+K Y VEVMACP GC+ G GQ P +E K L I +N M LA
Sbjct: 471 LLEKIKSGSVKYDMVEVMACPGGCVGGAGQPSPASTGVREERAKGLYNI--DNRMQLARS 528
Query: 360 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
+NP+++ LY++WL PGSE A K++HT Y P
Sbjct: 529 DENPMIKMLYEKWLGSPGSEVAHKYLHTHYRP 560
>gi|339233522|ref|XP_003381878.1| nuclear prelamin A recognition factor [Trichinella spiralis]
gi|316979259|gb|EFV62068.1| nuclear prelamin A recognition factor [Trichinella spiralis]
Length = 422
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 186/327 (56%), Gaps = 35/327 (10%)
Query: 1 MLEKQSLDEFLSNI----NKGKAV--------IISLSPQSRASLAEHFGISPLQVFKKLT 48
++E+Q EFL I N K + ++S+SPQSRASLA + ++ +KL
Sbjct: 107 LIEQQGPKEFLKMIEEFSNDNKVISKELKSLFVVSISPQSRASLAASYNLTVEVTQRKLC 166
Query: 49 TFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWIC 108
FL+SLG DT+ +R+ +L+ EF+ Y+++ + S S P++++ CPGW+C
Sbjct: 167 AFLRSLGADICLDTTFARNFSLLATAEEFVDYYRKNYLNCTSTSLSISPLITAICPGWVC 226
Query: 109 YAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAR 168
YAEK + ++P +S V+SPQ G+ +K ++ + + P+ I HVT+MPC+DKKLEA+R
Sbjct: 227 YAEKSVSDVVIPLMSKVRSPQAIAGSFVKDYLSKTMNILPNRIRHVTIMPCFDKKLEASR 286
Query: 169 EDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVD 228
F+ D+G EVD VL+T ++ ++ +E S L L ++
Sbjct: 287 SAFL----------ADDG-SSREVDLVLSTSDIYMIV---------IENSDL-LCLFDIF 325
Query: 229 DEGHLYGVAGS-SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLL 287
DE LY GS SGGY E VF++AAK LF + +E+ RN D +E L + K L
Sbjct: 326 DENTLYNHEGSGSGGYLEFVFKYAAKELFNLDVSS-VEYVAQRNKDIQEARLIHDNKVLF 384
Query: 288 KFALCYGFQNLQNIVRKVKMRKCDYQF 314
ALCYGF+N+QN++RK++ KC Y F
Sbjct: 385 HMALCYGFRNIQNLIRKIRAGKCAYHF 411
>gi|339441155|ref|YP_004707160.1| hypothetical protein CXIVA_00910 [Clostridium sp. SY8519]
gi|338900556|dbj|BAK46058.1| hypothetical protein CXIVA_00910 [Clostridium sp. SY8519]
Length = 581
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 139/402 (34%), Positives = 206/402 (51%), Gaps = 41/402 (10%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIF 60
E+ +D L I + K V+I +P RAS++E FG K KL ++ +G +F
Sbjct: 211 ERDDVDAVLEMIKDPDKYVVIQAAPSVRASISEAFGYPIGSGTKGKLAAAMRKIGFDRVF 270
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT S DLT++E NE I R + + +LPM +S CPGWI Y E +L
Sbjct: 271 DTVFSADLTIMEEANELIERIQ---------TGGTLPMFTSCCPGWINYIETYYDD-MLA 320
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
++SS KSPQQ GA +K + +K G D+I V+ MPC KK E RED
Sbjct: 321 HVSSCKSPQQMFGAMVKTFLSEKEGIPADKIVVVSTMPCTAKKRELGRED---------- 370
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
+P+VD LT+ E+ +I+ ++F LE+ D L G L+G ++
Sbjct: 371 ---QNAAGVPDVDFSLTSRELARMIERSGISFPGLEDEAFDAPLGIGTGAGTLFG---AT 424
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCYGFQNLQ 299
GG E R A L G+ +G +EF +R + D +E +V G L+ A+ G +N +
Sbjct: 425 GGVMEAALRTANDWLNGEA-QGEIEFTEVRGTKDIKEATYKV-GDLTLRVAIVSGLKNAK 482
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE-----TIYL--E 352
++ K++ + +Y FVE MACP GC+NGGGQ + K + ++K L T+Y +
Sbjct: 483 ALLEKMRAGEVEYDFVEFMACPGGCVNGGGQPQQK---ACVRMVKDLRAERAMTLYRLDK 539
Query: 353 NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVK 394
+ ML +NP + LYD +L +PGSEKA +HT Y K
Sbjct: 540 SDMLRKSHENPEIIELYDSYLGKPGSEKAHATLHTSYKSQAK 581
>gi|402592057|gb|EJW85986.1| hypothetical protein WUBG_03101 [Wuchereria bancrofti]
Length = 449
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 141/409 (34%), Positives = 231/409 (56%), Gaps = 46/409 (11%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
++++QS +FL + K K ++++SPQS AS+A G + + + K++G+K +
Sbjct: 81 LIKEQSKLKFLEGLAKAKLSVMTVSPQSIASIAYKRGCHLSEAVRLIARIFKNMGIKYVV 140
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
D+S R LTL + +EF +ES +R P+ + CPG++CYAEK G+ ++P
Sbjct: 141 DSSFGRLLTLSLSYDEF-------KESQLQR-----PIFTGVCPGFVCYAEKTHGTLLIP 188
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+IS V+SPQ +GA +K ++ +K RP+EI+H +VMPC+DKKLEAAR
Sbjct: 189 HISRVRSPQAMMGALVKDYLARKFNVRPEEIFHASVMPCFDKKLEAAR------------ 236
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
++ EVD VL+TGEV D I + + E+ + L +++ + GSS
Sbjct: 237 SHSGNHFNCREVDCVLSTGEV-DAILDECSSTESFSVAGKVGWLNALENGKIISSEGGSS 295
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFK-TIRNSDFREVALEVEGKTL-LKFALCYGFQNL 298
GGYAE + + F + + LE K TI++ ++ E+ ++G+T+ L A CYGF+N+
Sbjct: 296 GGYAEYIVKR-----FVEESKTPLELKRTIKDKNW-EIIEAIDGETIVLSVAKCYGFRNI 349
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV--ML 356
QN V+K+K KC+Y +VE+MACPSGC+NGGGQI+ + K+L+ + E+ M
Sbjct: 350 QNQVQKLKRSKCNYDYVEIMACPSGCINGGGQIRSASIEERKQLLDAINLSCSEDNSEME 409
Query: 357 ADPFKNPLVRSLYD-EWLEQPGSEKAKKHVHTEYHPVVKSITAQLH-NW 403
+ + S+ + +W+ ++T+YH VVKS ++ NW
Sbjct: 410 EELERVKEEWSILNPDWMNL---------LYTKYHAVVKSDADRISTNW 449
>gi|449546957|gb|EMD37926.1| hypothetical protein CERSUDRAFT_123742 [Ceriporiopsis subvermispora
B]
Length = 581
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 180/333 (54%), Gaps = 51/333 (15%)
Query: 38 ISPLQVFKKLTTF-LKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL 96
+ P +V ++ F ++ LG + +FDT+ +R + L+E EF R + E+ + L
Sbjct: 143 VGPAEVLARVRAFAIRVLGFEHVFDTTFARHIALLEHAREFSERRSGKGK---EKGVAPL 199
Query: 97 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTV 156
PML+SACPGW+CYAEK +LP+IS+ KSPQQ +G +K + K G PD+IYHVTV
Sbjct: 200 PMLASACPGWVCYAEKTHAE-MLPFISAAKSPQQVMGTLVKEWMGAKWGRTPDQIYHVTV 258
Query: 157 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL- 215
MPCYDKKLEA+REDF +TY +VD V+TTGE+ L++ K + A
Sbjct: 259 MPCYDKKLEASREDFC------NDTYATR-----DVDCVITTGELDLLMREKGWDLSAPI 307
Query: 216 --EESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD 273
E SP L + L SSG Y ++ AA + H +T+RNSD
Sbjct: 308 PEELSPPSPSLNPLAIPELLAHPGSSSGSYLHSLI--AALVASSQTPLTHT-VRTLRNSD 364
Query: 274 FRE-VALEVEGKTLLKFALCYGFQNLQNIVRKV--------------------KMRKC-- 310
+ E ++ G T+ + A CYGF+NLQN+VRKV + RK
Sbjct: 365 YEEHTVMDESGATVFRGARCYGFRNLQNLVRKVGREAGLQVGRGAAGRVGALRRARKAGP 424
Query: 311 ------DYQFVEVMACPSGCLNGGGQIKPKPGQ 337
Y +VEVMACP GC+NGGGQ++P GQ
Sbjct: 425 ESEQEKGYDYVEVMACPGGCVNGGGQLRPMLGQ 457
>gi|170583169|ref|XP_001896462.1| Iron only hydrogenase large subunit, C-terminal domain containing
protein [Brugia malayi]
gi|259511299|sp|A8PGQ3.1|NARF_BRUMA RecName: Full=Probable cytosolic Fe-S cluster assembly factor
Bm1_25010
gi|158596328|gb|EDP34689.1| Iron only hydrogenase large subunit, C-terminal domain containing
protein [Brugia malayi]
Length = 448
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 143/415 (34%), Positives = 232/415 (55%), Gaps = 58/415 (13%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
++++QS +FL + K + ++++SPQS AS+A G + + + ++G+K +
Sbjct: 80 LIKEQSKPKFLEGLKKAQLSVMTVSPQSIASIAYKRGCHLSEAARLIARIFMNMGMKYVV 139
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
D+S R LTL + +EF +ES +R P+ + CPG++CYAEK G+ ++P
Sbjct: 140 DSSFGRLLTLSLSYDEF-------KESQLQR-----PIFTGVCPGFVCYAEKTHGTLLIP 187
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+IS V+SPQ +GA +K ++ +K RP+EI+H +VMPC+DKKLEAAR
Sbjct: 188 HISCVRSPQAMMGALVKDYLARKFNVRPEEIFHASVMPCFDKKLEAAR------------ 235
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD---KMLTNVDDEGHLYGVA 237
++ + EVD VL+TGEV ++ + E P+D L +++ +
Sbjct: 236 SHSENHFNCREVDCVLSTGEVDAILD----ECSSTESFPVDGKVGWLNALENGKIISSEG 291
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFK-TIRNSDFREVALEVEGKTL-LKFALCYGF 295
GSSGGYAE + + F + + L+ K TI++ ++ E+ V+G+T+ L A CYGF
Sbjct: 292 GSSGGYAEYIVKR-----FVEESKTPLKLKRTIKDKNW-EIIEAVDGETIVLSVAKCYGF 345
Query: 296 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM 355
+N+QN V+K+K KC+Y +VE+MACPSGC+NGGGQI+ + K+L+ T+E E+
Sbjct: 346 RNIQNQVQKLKRSKCNYDYVEIMACPSGCINGGGQIRSASIEERKQLLDTIELPCSED-- 403
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKA------KKHVHTEYHPVVKSITAQLH-NW 403
S +E LE+ E + ++T+YH VVKS ++ NW
Sbjct: 404 ----------NSEMEEQLERVKEEWSILNPDWMNLLYTKYHAVVKSDADRISTNW 448
>gi|153814131|ref|ZP_01966799.1| hypothetical protein RUMTOR_00340 [Ruminococcus torques ATCC 27756]
gi|145848527|gb|EDK25445.1| hydrogenase, Fe-only [Ruminococcus torques ATCC 27756]
Length = 595
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 134/397 (33%), Positives = 210/397 (52%), Gaps = 37/397 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK ++D+ L+ I ++ K V++ +P RA+L E FG P+ V K+ L+ +G
Sbjct: 222 LYEKSNIDDVLAAIADETKHVVVQPAPSVRAALGEEFGY-PMGTDVEGKMAAALRRIGFD 280
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT+ S DLT++E +EF+ R K + LP+++S PGW+ Y E
Sbjct: 281 KVFDTNFSADLTIMEEAHEFLDRVK---------NKGVLPLMTSCSPGWVKYCEHYYPDQ 331
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
L ++SS KSPQQ GA K + +K+ P++I V+VMPC KK E RED
Sbjct: 332 -LDHLSSCKSPQQMFGAITKTYYAEKMNIAPEDIVCVSVMPCTAKKFEIQRED------- 383
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
+D G +P+VD +TT E+ LI+ +NF +L + D L G ++G
Sbjct: 384 -----QDAG-GVPDVDISITTRELARLIRKVGINFRSLPDEGFDDPLGESTGAGVIFG-- 435
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQ 296
++GG E R A + L G+ +E +EF +R ++ +E V G + K A+ G
Sbjct: 436 -ATGGVMEAALRTAVEELTGETLE-KVEFTEVRGTEGIKEAVYNVAGMDV-KVAVASGLS 492
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVML 356
N + I+ K++ ++ DY FVE+M CP GC+NGGGQ + E +K + L +
Sbjct: 493 NAKIIMDKIRAKEADYHFVEIMCCPGGCVNGGGQPQVHADVRNFEDVKAIRAKVLYDNDA 552
Query: 357 ADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
A + NP ++ +Y E+L +PGSEKA +HT Y
Sbjct: 553 AKTLRKSHENPSIKRVYSEYLGEPGSEKAHHILHTTY 589
>gi|120538591|gb|AAI29941.1| NARFL protein [Homo sapiens]
Length = 233
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 153/247 (61%), Gaps = 14/247 (5%)
Query: 157 MPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE 216
MPCYDKKLEA+R DF +QE RD VD VLTTGEV L++ + V+ LE
Sbjct: 1 MPCYDKKLEASRPDFF----NQEHQTRD-------VDCVLTTGEVFRLLEEEGVSLPDLE 49
Query: 217 ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE 276
+PLD + + E G SGGY E VFRHAA+ LFG + + +K +RN DF+E
Sbjct: 50 PAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFGIHV-AEVTYKPLRNKDFQE 108
Query: 277 VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 336
V LE EG+ LL FA+ YGF+N+QN+V+++K +C Y +VEVMACPSGCLNGGGQ++ P
Sbjct: 109 VTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGGGQLQ-APD 167
Query: 337 QSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSI 396
+ +EL++ +E +Y V P P V+ LY WL+ SE A + +HT+YH V K+
Sbjct: 168 RPSRELLQHVERLY-GMVRAEAPEDAPGVQELYTHWLQGTDSECAGRLLHTQYHAVEKAS 226
Query: 397 TAQLHNW 403
T W
Sbjct: 227 TGLGIRW 233
>gi|71995015|ref|NP_498092.4| Protein OXY-4 [Caenorhabditis elegans]
gi|75022888|sp|Q9N392.5|NARF_CAEEL RecName: Full=Probable cytosolic Fe-S cluster assembly factor oxy-4
gi|373219738|emb|CCD69851.1| Protein OXY-4 [Caenorhabditis elegans]
Length = 457
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 135/408 (33%), Positives = 221/408 (54%), Gaps = 40/408 (9%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
++E+QS I K ++++SPQ+ S+A G S +V K + +F + LGVK +
Sbjct: 85 LVEEQSFGRVYEGIQNSKLSVVTVSPQAITSIAVKIGKSTNEVAKIIASFFRRLGVKYVI 144
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
D+S +R + E ++S P+LSSACPG++CYAEK G ++P
Sbjct: 145 DSSFARKFA-----------HSLIYEELSTTPSTSRPLLSSACPGFVCYAEKSHGELLIP 193
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
IS ++SPQ GA IK + ++ G P +++H VMPC+DKKLEA+RE F
Sbjct: 194 KISKIRSPQAISGAIIKGFLAKREGLSPCDVFHAAVMPCFDKKLEASREQF--------- 244
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEA--LEESPLDKMLTNVDDEGHLYG-VA 237
+ +G ++ E D V++T E+L+ I +K N EA +E ++ + +G + G
Sbjct: 245 --KVDGTDVRETDCVISTAELLEEI-IKLENDEAGDVENRSEEEQWLSALSKGSVIGDDG 301
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIR-NSDFREVALEVE-GKTLLKFALCYGF 295
G+SGGYA+ + R G ++ KT + N + +E E G+ LL+ A YGF
Sbjct: 302 GASGGYADRIVRDFVLENGGGIV------KTSKLNKNMFSTTVESEAGEILLRVAKVYGF 355
Query: 296 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM 355
+N+QN+VRK+K +K +VE+MACP GC NGGGQI+ + +E + +E +Y E++
Sbjct: 356 RNVQNLVRKMKTKKEKTDYVEIMACPGGCANGGGQIRYETMDEREEKLIKVEALY-EDLP 414
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
D + + + +EW + + + + T+Y PV ++ AQ+ W
Sbjct: 415 RQDDEETWI--KVREEW--EKLDKNYRNLLFTDYRPVETNV-AQVLKW 457
>gi|317499936|ref|ZP_07958172.1| hydrogenase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331087841|ref|ZP_08336766.1| hypothetical protein HMPREF1025_00349 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438264|ref|ZP_08617904.1| hypothetical protein HMPREF0990_00298 [Lachnospiraceae bacterium
1_1_57FAA]
gi|316898653|gb|EFV20688.1| hydrogenase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330409536|gb|EGG88977.1| hypothetical protein HMPREF1025_00349 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336014070|gb|EGN43933.1| hypothetical protein HMPREF0990_00298 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 580
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 134/397 (33%), Positives = 210/397 (52%), Gaps = 37/397 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK ++D+ L+ I ++ K V++ +P RA+L E FG P+ V K+ L+ +G
Sbjct: 207 LYEKSNIDDVLAAIADETKHVVVQPAPSVRAALGEEFGY-PMGTDVEGKMAAALRRIGFD 265
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT+ S DLT++E +EF+ R K + LP+++S PGW+ Y E
Sbjct: 266 KVFDTNFSADLTIMEEAHEFLDRVK---------NKGVLPLMTSCSPGWVKYCEHYYPDQ 316
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
L ++SS KSPQQ GA K + +K+ P++I V+VMPC KK E RED
Sbjct: 317 -LDHLSSCKSPQQMFGAITKTYYAEKMNIAPEDIVCVSVMPCTAKKFEIQRED------- 368
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
+D G +P+VD +TT E+ LI+ +NF +L + D L G ++G
Sbjct: 369 -----QDAG-GVPDVDISITTRELARLIRKVGINFRSLPDEGFDDPLGESTGAGVIFG-- 420
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQ 296
++GG E R A + L G+ +E +EF +R ++ +E V G + K A+ G
Sbjct: 421 -ATGGVMEAALRTAVEELTGETLE-KVEFTEVRGTEGIKEAVYNVAGMDV-KVAVASGLS 477
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVML 356
N + I+ K++ ++ DY FVE+M CP GC+NGGGQ + E +K + L +
Sbjct: 478 NAKIIMDKIRAKEADYHFVEIMCCPGGCVNGGGQPQVHADVRNFEDVKAIRAKVLYDNDA 537
Query: 357 ADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
A + NP ++ +Y E+L +PGSEKA +HT Y
Sbjct: 538 AKTLRKSHENPSIKRVYSEYLGEPGSEKAHHILHTTY 574
>gi|225572039|ref|ZP_03780903.1| hypothetical protein RUMHYD_00333 [Blautia hydrogenotrophica DSM
10507]
gi|225040474|gb|EEG50720.1| hydrogenase, Fe-only [Blautia hydrogenotrophica DSM 10507]
Length = 581
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 137/400 (34%), Positives = 209/400 (52%), Gaps = 47/400 (11%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSI 59
EK D+ L+ I + K V++ +P RA+L E FG P+ V K+ L+ +G +
Sbjct: 209 EKDYTDQVLAAIADPEKYVVVQTAPSVRAALGEEFGY-PIGTDVEGKMAAALRRMGFDKV 267
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
FDT S DLT++E +EF+ R + + LP+++S PGW+ Y E +L
Sbjct: 268 FDTDFSADLTIMEEAHEFLNRVQ---------NGGVLPLITSCSPGWVKYCEHYFPD-LL 317
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
++SS KSPQQ GA K + +K+G P++I V+VMPC KK E R D
Sbjct: 318 DHLSSCKSPQQMFGAVTKTYFAEKMGLDPEKIVCVSVMPCTAKKFEIGRPD--------- 368
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS 239
+P+VD +TT E+ LI+ +NF L E D L G ++G +
Sbjct: 369 ----QSAAGVPDVDIAITTRELARLIKRCGINFVNLPEETFDDPLGESTGAGVIFG---A 421
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNL 298
+GG E R A +TL G+ + G L+F+ +R ++ +E + V G + K A+ G N
Sbjct: 422 TGGVMEAALRTAVETLTGETL-GSLDFEEVRGTEGIKEASYLVNGLEV-KVAVASGLANA 479
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-----IKTL--ETIYL 351
+ I+ K++ + DY F+E+MACP GC+NGGGQ Q P E+ I+ L + +Y
Sbjct: 480 REILEKIRRGEADYHFIEIMACPGGCVNGGGQ-----PQVPAEVRNFQDIRALRAKVLYQ 534
Query: 352 ENV--MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ L +NP ++ LY E+L +PGS KA K +HT Y
Sbjct: 535 NDTQKALRKSHENPSIQKLYAEYLGEPGSHKAHKILHTSY 574
>gi|393217461|gb|EJD02950.1| iron hydrogenase [Fomitiporia mediterranea MF3/22]
Length = 634
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 139/405 (34%), Positives = 197/405 (48%), Gaps = 100/405 (24%)
Query: 18 KAVIISLSPQSRASLAEHFG------ISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLI 71
K ++S+SPQS ASLA ++ VF ++ F + LG + ++DT+ +R L L+
Sbjct: 119 KTPVLSISPQSLASLAATISSTSTNTVALAHVFHRVAAFARELGFEHVYDTTFARHLALL 178
Query: 72 EACNEFIAR-YKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 130
E +EF R + + D E + LPML+SACPGW+CYAEK +LP+IS KSPQQ
Sbjct: 179 EHAHEFHERKHGTTNGIDGEDAAGKLPMLASACPGWVCYAEKTHAE-MLPFISRTKSPQQ 237
Query: 131 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 190
+G +K+ + +K G +P++IYHVTVMPCYDKKLEA+R+DF L S +
Sbjct: 238 VMGTLVKNWLSEKWGKKPNQIYHVTVMPCYDKKLEASRQDFYNDLYSTRD---------- 287
Query: 191 EVDSVLTTGEVLDLIQLKAVNFEALEESP-------------LDKMLTNVDDE------- 230
VD V+TTGE+ +++ + ++ L+ P L K D+E
Sbjct: 288 -VDCVITTGELQRMMRERNWAWDLLKPVPGPSETGIEVETSLLSKSKAEEDEEDTIPIPK 346
Query: 231 ----GHLYGV---------AGSSGGYAETVFRHAAKT--LFGKVIEGHLEFKTIRNSDFR 275
G Y + SSG Y ++ T L G+ E L + +R +DF
Sbjct: 347 QKSEGPSYSLTLPSLLLHPGSSSGSYLHSLLSTIQDTAHLSGQA-EPKLTIRQVRGADFE 405
Query: 276 EVALEV--EGKTLLKFALCYGFQNLQNIVRKV-------------------------KMR 308
E L GK + K A CYGF+NLQN+VR+V K R
Sbjct: 406 EYLLRAPDTGKIVFKGARCYGFRNLQNVVRRVGRAAGVQVGRGAAGRLANVRAKTRIKRR 465
Query: 309 KCD------------------YQFVEVMACPSGCLNGGGQIKPKP 335
+ Y +VEVMACP GC+NGGGQ+ P P
Sbjct: 466 TANNSNGAIEGDNLEEEEDRPYDYVEVMACPGGCVNGGGQLPPLP 510
>gi|405972741|gb|EKC37491.1| Cytosolic Fe-S cluster assembly factor narfl [Crassostrea gigas]
Length = 261
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/274 (44%), Positives = 170/274 (62%), Gaps = 15/274 (5%)
Query: 132 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 191
+G+ +K + K G PD+IYHVTVMPCYDKKLEA+R+DF L YR +
Sbjct: 1 MGSLVKDYFAAKQGQTPDQIYHVTVMPCYDKKLEASRQDFYSDL------YRTR-----D 49
Query: 192 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVD--DEGHLYGVAGSSGGYAETVFR 249
VD V+TTGEV +++ + V +E + +L+ D G + G SGGY E V R
Sbjct: 50 VDCVITTGEVEKMLEKENVTLGQVEGNTAYCVLSGFGSPDGGLGSHLGGGSGGYLEHVMR 109
Query: 250 HAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK 309
+A + G ++ L++KT+RN DF+EV +E+EGK LK AL YGF+N+QNIV+K+K K
Sbjct: 110 YAVSQIHGSSVDS-LQYKTLRNQDFQEVTVEIEGKRPLKMALAYGFRNIQNIVQKIKRGK 168
Query: 310 CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLY 369
Y FVE+MACPSGC NGGGQI+P GQ+ EL++ ++ Y ++V P P V+ +Y
Sbjct: 169 MTYDFVEIMACPSGCANGGGQIRPMEGQTNNELLQRVKESY-DSVPCVQPDLWPGVKDIY 227
Query: 370 DEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
+EWL +EKA+ +HT+YH V K +A W
Sbjct: 228 EEWLGGVDTEKARAMLHTQYHGVEKVASALNIQW 261
>gi|402901473|ref|XP_003913673.1| PREDICTED: nuclear prelamin A recognition factor-like [Papio
anubis]
Length = 328
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 110/322 (34%), Positives = 183/322 (56%), Gaps = 16/322 (4%)
Query: 68 LTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKS 127
+ + C+ F + + D + + + + PGW+ YAE+ LG I ++ + KS
Sbjct: 9 VVCLSGCSHFPVASRPAGSHDPQPGHRGWVLGPARAPGWVRYAERVLGRPITAHLCTAKS 68
Query: 128 PQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGL 187
PQQ +G+ +K + ++ P++I+HV V PCYDKKLEA +E F L T
Sbjct: 69 PQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQEGFPPALHGSRGT------ 122
Query: 188 EIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETV 247
D VLT+GE+ +++ + +++++ +D + ++ ++ SS G+ +
Sbjct: 123 -----DCVLTSGEIAQIMEQGDL---SVKDAAVDTLFGDLKEDKVTRHDGASSDGHLAHI 174
Query: 248 FRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKM 307
FRHAAK LF + +E + ++ +RN DF+EV LE G+ +L+FA YGF+N+QN++ K+K
Sbjct: 175 FRHAAKELFNEDVE-EVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKK 233
Query: 308 RKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRS 367
K Y FVEV+AC GCLNG GQ + G + K L++ +E IY ++ + P + ++
Sbjct: 234 GKFPYHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIY-ADIPVRRPESSAHMQE 292
Query: 368 LYDEWLEQPGSEKAKKHVHTEY 389
LY EWLE S KA++ +HT Y
Sbjct: 293 LYQEWLEGINSPKAREVLHTTY 314
>gi|242032963|ref|XP_002463876.1| hypothetical protein SORBIDRAFT_01g008090 [Sorghum bicolor]
gi|241917730|gb|EER90874.1| hypothetical protein SORBIDRAFT_01g008090 [Sorghum bicolor]
Length = 222
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/138 (70%), Positives = 117/138 (84%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQSL +F+ IN KAVI+S+SPQSRASLA FG+S QV +KLT LKS+GVK++F
Sbjct: 78 MLEKQSLGDFIDRINSDKAVIVSVSPQSRASLAAFFGLSQSQVLRKLTALLKSIGVKAVF 137
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DTS SRDL+LIEACNEF++RY+++Q S + + ++LPM+SSACPGWICYAEK LGSYILP
Sbjct: 138 DTSSSRDLSLIEACNEFVSRYEKNQSSSGKEAGANLPMISSACPGWICYAEKTLGSYILP 197
Query: 121 YISSVKSPQQTIGATIKH 138
YISSVKSPQQ IGA IKH
Sbjct: 198 YISSVKSPQQAIGAAIKH 215
>gi|424513093|emb|CCO66677.1| unnamed protein product [Bathycoccus prasinos]
Length = 603
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 138/407 (33%), Positives = 216/407 (53%), Gaps = 65/407 (15%)
Query: 1 MLEKQSLDEFLS-------NIN--------------KGKAVIISLSPQSRASLAEHFGIS 39
++E+QS++EFL NI + + ++++LSPQS ASLA + +
Sbjct: 150 LMEQQSVEEFLGQNFSSEGNIQPVGGTHDRGRGGGGRRRRLVVTLSPQSTASLAVKYSVK 209
Query: 40 PLQVFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPM 98
++ +K+ F K+ +++ ++ +R + EF R +S+ LPM
Sbjct: 210 YEEMLEKMCGFFKTHFNARAVCSSTEARAASRARYAKEFTER--------KSKSSGLLPM 261
Query: 99 LSSACPGWICYAEKQLGSYI-LPYISSVKSPQQTIGATIKHHICQKLGFRPD-------- 149
++SACPGW+CYAEK + + ++ KSPQ G K ++ F D
Sbjct: 262 IASACPGWVCYAEKTENALRDVNLLAKAKSPQAIAGTFAKKG--RRAAFSEDTEEEEEEE 319
Query: 150 --EIYHVTVMPCYDKKLEAAREDFVFQL--DSQEETYRDEGLEIPEVDSVLTTGEVLDLI 205
E YHV+VMPC+DKKLEA+R +F + D + D+ + E D VLTT EV++L+
Sbjct: 320 EEEAYHVSVMPCFDKKLEASRREFKTKREGDVLGQGKDDDVDGVNETDCVLTTTEVVELL 379
Query: 206 QLKA-----VNFEALEESPLDKM---------LTNVDDEGHLYGV-----AGSSGGYAET 246
+ K +L + +D M + +V+++ + A +SG Y E
Sbjct: 380 EKKCNIVDEAGVRSLPSAKIDSMFASWFRTEDMMDVEEDEQEDALLPPAFAATSGAYLEY 439
Query: 247 VFRHAAKTLFGKVIEGH-LEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKV 305
VFR AA+ L+G + G LE+KT+ N+D REV L++EG+ LKF L YGF+N+QN+ R +
Sbjct: 440 VFRKAARDLYGVDLRGKDLEYKTLTNADMREVELKIEGEVKLKFLLAYGFRNVQNVTRAL 499
Query: 306 KMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE 352
K + FVE+MACPSGC NGGGQ+ PK +L+K +E Y+E
Sbjct: 500 KREPNKWDFVEMMACPSGCANGGGQVPPKQSYLNAKLLKRVEEAYME 546
>gi|358059435|dbj|GAA94841.1| hypothetical protein E5Q_01495 [Mixia osmundae IAM 14324]
Length = 620
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 138/396 (34%), Positives = 194/396 (48%), Gaps = 87/396 (21%)
Query: 21 IISLSPQSRASLAEHFGISPLQVFKKLTTFLK-SLGVKSIFDTSCSRDLTLIEACNEFIA 79
++S+SPQS ASL+ + +SP + F L F K +LG +FDT +R+L+L + E +
Sbjct: 135 VLSISPQSIASLSVLYSVSPQRTFNALARFFKRTLGFALVFDTDYARELSLAQGRREVLE 194
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
R+ QS D ++ LP+L+SACPGWICYAEK G +LP+IS+VKSPQQ G+ IK +
Sbjct: 195 RW-QSNAQADTGAHLPLPLLASACPGWICYAEKTHGE-LLPFISAVKSPQQIAGSLIKQY 252
Query: 140 ICQKLGF------------RPD---EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
+ + RP IYHV+VMPC+DKKLEA+R DF + + +
Sbjct: 253 LVTRPHVEALLNTTSASEERPRGRRRIYHVSVMPCFDKKLEASRPDFADPITGERD---- 308
Query: 185 EGLEIPEVDSVLTTGEVLDLIQLKAVNF-------EALEESPLDKMLTNVDDE----GHL 233
VD VLTTGEV ++Q V+ A++ + ++DE
Sbjct: 309 -------VDCVLTTGEVHKMLQDHNVDLSSGDAERNAMQMDGDASSTSEIEDELLPRFTS 361
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEG-HLEFKTIRNSDFREVALEVEGKTLLKFALC 292
+ SSGGY R A +L HLE + +R D+ E L G + + A C
Sbjct: 362 SALGTSSGGYLFNALRAVAASLPSDQQSMLHLESRAVRGEDYIEYRLLFNGALIFRAAKC 421
Query: 293 YGFQNLQNIVRKV-------------------------------KMRKCD---------- 311
YGF+NLQN+VRKV + R+ D
Sbjct: 422 YGFRNLQNVVRKVGKDKGLAIGHGAARGSMEGPRARSKGLAAVRRARRNDRAGAREVVVD 481
Query: 312 -----YQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 342
Y F+EVMACPSGC+NGGGQ+ P + +L
Sbjct: 482 AAERSYDFIEVMACPSGCVNGGGQLPPSSARDHMQL 517
>gi|341895670|gb|EGT51605.1| hypothetical protein CAEBREN_28974 [Caenorhabditis brenneri]
Length = 460
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 136/412 (33%), Positives = 211/412 (51%), Gaps = 47/412 (11%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
++E+QS L I K ++++SPQ+ S A S V ++ F GVK I
Sbjct: 87 LVEEQSFGRLLEGIQNSKLAVVTISPQTFVSFAVKLQKSTGDVATLISKFFHRHGVKYIL 146
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
D+S +R A E + ++S P+LSSACPG++CYAEK G ++P
Sbjct: 147 DSSFARKFAHSLAFEELHST-----------PSTSRPLLSSACPGFVCYAEKSHGELLIP 195
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
IS ++SPQ GA IK ++ +K G P +++H VMPC+DKKLEA+RE F
Sbjct: 196 KISKIRSPQAISGALIKGYLAKKEGLSPCDVFHAAVMPCFDKKLEASREQF--------- 246
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL---DKMLTNVDDEGHLYGVA 237
+ +G EI E D V++T E+L+ I K ++E+S + D+ +T++ +
Sbjct: 247 --KVDGTEIRETDCVVSTAELLEEIT-KENPEGSIEDSTVFEGDEWMTHLSRGAVIGDAG 303
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQN 297
GSSGGYA+ + R G + L +N V G+ LL+ A YGF+N
Sbjct: 304 GSSGGYADRIVRDFVHQNGGVIKTTKLN----KNMFSTTVESPESGEILLRVAKVYGFRN 359
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLA 357
+QN+VRK+K +K +VE+MACP GC NGGGQI+ + ++ ++ +E Y
Sbjct: 360 VQNLVRKMKTKKEKTDYVEIMACPGGCANGGGQIRYETMDEREKRLERVEEEY------- 412
Query: 358 DPFKNPLVRSLYDEWLEQPGSEKAK------KHVHTEYHPVVKSITAQLHNW 403
D K ++W+E+ + K +H+ T+Y PV ++ AQ W
Sbjct: 413 DSLK---AHDTLEDWVEKVRVDWGKVDQDYRRHLFTDYKPVETNV-AQALKW 460
>gi|393235155|gb|EJD42712.1| iron hydrogenase [Auricularia delicata TFB-10046 SS5]
Length = 463
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 142/427 (33%), Positives = 211/427 (49%), Gaps = 67/427 (15%)
Query: 1 MLEKQSLDEFLSN---INKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGV 56
++ QS DE L+ + G ++S+SPQ+ A+LA + Q +T + +S L V
Sbjct: 80 LVAAQSADEVLNATRALPTGHVAVLSVSPQTLAALASSSSTTLQQTLDSVTAWARSALRV 139
Query: 57 KSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGS 116
++FDT+ +R + E EF R + +N PML+ ACPGW+CYAEK G
Sbjct: 140 NAVFDTTFARHIARHETVREFHER---------KAANVPGPMLAGACPGWVCYAEKTHGQ 190
Query: 117 YILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLD 176
+LP +S+ +S Q +G +KH + +K G +P EIYH+TVMPCYDKKLEA+R DF
Sbjct: 191 -LLPLMSATRSAQAVMGVLVKHWLARKWGKKPSEIYHITVMPCYDKKLEASRPDFAPD-- 247
Query: 177 SQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGV 236
++ EVD VL+TGE+ L ++ V + LD D HL
Sbjct: 248 -----------DVREVDCVLSTGELAQL--MRDVPADGPPAPSLD------DSIPHLLTH 288
Query: 237 AG-SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEV-EGKTLLKFALCYG 294
AG SSG + + AA+ G +++ H E RN+D+++ L + +G + + A CYG
Sbjct: 289 AGTSSGSFLHALLADAAERHPGAILQ-HTE----RNADWQDYTLSMPDGTPIFRGATCYG 343
Query: 295 FQNLQNIVRKVKMRK---------------CDYQFVEVMACPSGCLNGGGQIKPKPGQSP 339
F+N+QN+VR++K + Y FVEVMACP GC+ GGGQ+
Sbjct: 344 FRNIQNLVRRLKQKDKPVPARRRQTAAADAATYDFVEVMACPGGCVAGGGQLVKG----- 398
Query: 340 KELIKTLETIYL---ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSI 396
+ K +E +Y E+ + L R D W E G K + T Y V +
Sbjct: 399 RAAAKDVEEVYWSSQEDAAALLEAEQLLTRIASDLWAEDNGER--SKLLRTSYKAVESDV 456
Query: 397 TAQLHNW 403
W
Sbjct: 457 VGLGVKW 463
>gi|269216954|ref|ZP_06160808.1| ferredoxin hydrogenase [Slackia exigua ATCC 700122]
gi|269129761|gb|EEZ60845.1| ferredoxin hydrogenase [Slackia exigua ATCC 700122]
Length = 583
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 132/399 (33%), Positives = 207/399 (51%), Gaps = 40/399 (10%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKS 58
++EK +DE + + + K V + ++P RA+L E F + V ++ L+ LG
Sbjct: 212 LVEKTCIDEVNAALADPKKYVAVQVAPAVRAALGEDFEFPLGIDVEGRIAEGLRLLGFDK 271
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT DLT++E NE + R + LPM++S CPGWI YAE +
Sbjct: 272 VFDTKFGADLTIVEEANELVDRIAH---------DGVLPMITSCCPGWIKYAE-HFYPDM 321
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L ISS KSP Q GA +K + ++ G ++I V+VMPC KK E R D
Sbjct: 322 LDNISSCKSPHQMHGAIVKSFLAEREGLDKEDIVTVSVMPCTAKKFECTRND-------- 373
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE-ESPLDKMLTNVDDEGHLYGVA 237
++G +P+VD V+TT E+ + + + EA+ + D L G ++G
Sbjct: 374 -----EDGAGVPDVDIVVTTNELAKMFKDAGIQLEAMNPATAYDHPLGFGTGAGIIFG-- 426
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQ 296
+SGG E R A +T+ GK ++ EF +R + +E +++++G + + A+ G
Sbjct: 427 -ASGGVMEAALRTACETISGKELDA-FEFAAVRGMAGIKEASVDIDGADV-RVAVVSGLA 483
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT----LETIYLE 352
N ++ KVK + DYQF+EVMACP GC+NGGGQ P G + L +Y
Sbjct: 484 NANMLLTKVKNGEADYQFIEVMACPGGCVNGGGQ--PHQGAYARRLADVPAARAAALYGN 541
Query: 353 N--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + +NP ++ LYDE+LE+PGSE+A + +HT Y
Sbjct: 542 DSESEVRKSHENPYIKLLYDEYLEKPGSERAHRLLHTTY 580
>gi|255526809|ref|ZP_05393708.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7]
gi|296186425|ref|ZP_06854828.1| putative ferredoxin hydrogenase [Clostridium carboxidivorans P7]
gi|255509488|gb|EET85829.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7]
gi|296048872|gb|EFG88303.1| putative ferredoxin hydrogenase [Clostridium carboxidivorans P7]
Length = 574
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 129/378 (34%), Positives = 205/378 (54%), Gaps = 38/378 (10%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
+GK VI+ +P RA+L E FG+ + V K+ L+SLG +FDT + DLT++E
Sbjct: 226 EGKLVIVQTAPAVRAALGEEFGLEYGKPVTGKMVAALRSLGFDKVFDTDFAADLTIMEEA 285
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
E + R + LPML+S CPGWI + E + S +L SS KSPQQ GA
Sbjct: 286 TELMGRIT---------NGGKLPMLTSCCPGWINFIEHEF-SDLLDSPSSCKSPQQMFGA 335
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
K + +K+ P +I V+VMPC KK EAAR +++S +VD
Sbjct: 336 VAKTYFAEKMNMDPKDIILVSVMPCLAKKYEAARP----EMNS-------------DVDI 378
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V++T E+ +I+ +NFE L++ D +L ++GV +GG E R A +
Sbjct: 379 VISTRELAKMIKEAGINFEKLQDEDFDSLLGESTGAAVIFGV---TGGVMEAALRTAYEW 435
Query: 255 LFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
+ G+ ++ +++F+ +R D +E +++++ +K A+ G N + ++ K++ K DYQ
Sbjct: 436 ITGETLD-NVDFEVVRGLDGIKEASIKIK-DLEVKAAIVSGLGNARKLLNKIREGKADYQ 493
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDE 371
+E+MACP GC++GGGQ P + L + +Y E N L +NP + LY+E
Sbjct: 494 IIEIMACPGGCIDGGGQ--PYIHGKYEILKDRMNALYEEDKNKTLRKSHENPAIIKLYEE 551
Query: 372 WLEQPGSEKAKKHVHTEY 389
+L +P SEKA K +HT+Y
Sbjct: 552 FLGKPNSEKAHKLLHTKY 569
>gi|290994687|ref|XP_002679963.1| nuclear prelamin A recognition factor [Naegleria gruberi]
gi|284093582|gb|EFC47219.1| nuclear prelamin A recognition factor [Naegleria gruberi]
Length = 614
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 144/411 (35%), Positives = 210/411 (51%), Gaps = 92/411 (22%)
Query: 50 FLKSLGVKSIFDTSC-SRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWIC 108
F G ++F+TS +R ++ +E C +F+ RYK+ + P+ +SACPGWIC
Sbjct: 219 FKVKFGAVAVFETSTLARLVSHLELCEDFLNRYKEGKG----------PVFASACPGWIC 268
Query: 109 YAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI-------YHVTVMPCYD 161
YAEK I+P IS+VKSPQQ +G +K I + +EI YH TVMPC+D
Sbjct: 269 YAEKT-QPEIIPSISTVKSPQQIMGTFVKKFITSNMKQLSNEISLENLKVYHTTVMPCFD 327
Query: 162 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQ------------LKA 209
KKLEA+R DF +VD VLT+ E+ +L+Q
Sbjct: 328 KKLEASRPDFTND-------------PFDKVDMVLTSSEITELLQKELQIETPEDFIRNT 374
Query: 210 VNFEALEESPLDKML-----------TNVDDEGHLYGVAGS------SGGYAETVFRHAA 252
NF E+ LD + ++ ++ L GS SGGY E VF++AA
Sbjct: 375 ENFIKNEKYQLDSIFEILSQSTHHSTQDISEDATLLEWLGSESDATGSGGYCEIVFKYAA 434
Query: 253 KTLFG-KVIEGHLEFKTIRNSDFREVAL---EVEGKTLLKFALCYGFQNLQNIVRKVKMR 308
K LFG + + L F++ RNSD+RE L K LL+F + GF+N+QN+VR+ M+
Sbjct: 435 KKLFGIDLRDKTLIFESKRNSDYRETVLVDPTDSSKILLRFVIANGFRNIQNLVRR--MK 492
Query: 309 KCD----YQFVEVMACPSGCLNGGGQIKPKPGQ-------------SPKELIKTLETIYL 351
+ D + FVEVMACP GCLNGGGQ+K K + +PK+ + E +Y
Sbjct: 493 QADNSEPFHFVEVMACPIGCLNGGGQVKVKQPKITLDIDSPSSVTITPKQHLAQTEKLYR 552
Query: 352 ENV----MLADPFKNPL---VRSLYDEWLE-QPGSEKAKKHVHTEYHPVVK 394
+++ L + N + + +LY W++ GS +AK +HT+YH V K
Sbjct: 553 DDISNIKSLCENNSNLVKEGLNNLYYNWIKGSVGSVQAKSILHTQYHAVEK 603
>gi|266619028|ref|ZP_06111963.1| ferredoxin hydrogenase [Clostridium hathewayi DSM 13479]
gi|288869449|gb|EFD01748.1| ferredoxin hydrogenase [Clostridium hathewayi DSM 13479]
Length = 587
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 136/401 (33%), Positives = 208/401 (51%), Gaps = 45/401 (11%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK +DE + I + K VI+ +P RA L E FG P+ V K+ L+ +G
Sbjct: 212 LYEKSCIDEVAAAIADPSKHVIVQTAPAVRAGLGEEFGY-PIGTNVEGKMAAALRRIGFD 270
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT+ S DLT++E +EFI R K + +LPM++S PGWI Y E
Sbjct: 271 KVFDTNFSADLTIMEEAHEFIERVK---------NGGTLPMITSCSPGWIKYCEHYFPD- 320
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+ +S+ KSPQQ GA K + +K+G +P++I V+VMPC KK E R D+
Sbjct: 321 MTDNLSTCKSPQQMFGAIAKSYYAEKMGLKPEDIVSVSVMPCTAKKFEIGR-------DN 373
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
Q+ P+VD +TT E+ +I+ + F L + D L G G A
Sbjct: 374 QDAN------GCPDVDYSMTTRELARMIKKYGIRFNELPDEEFDAPL------GLGTGAA 421
Query: 238 ---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCY 293
G++GG E R A +TL G+ +E ++F +R ++ +E V G + K A+
Sbjct: 422 VIFGATGGVMEAALRTAVETLTGEELE-KVDFTDVRGTEGIKEAVYNVAGMDV-KVAVAS 479
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYLE 352
G N + ++ +VK + DY F+E+M CP GC+NGGGQ + +PG + I+ L L
Sbjct: 480 GLGNAKELLNRVKSGEADYHFIEIMGCPGGCVNGGGQPQ-QPGSVRNTVDIRALRAKVLY 538
Query: 353 NVMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ A+ + NP ++ LY+ +L +PGSEKA +HT Y
Sbjct: 539 DEDAANTIRKSHENPAIKELYETYLGKPGSEKAHHLLHTTY 579
>gi|312079099|ref|XP_003142028.1| iron only hydrogenase large subunit domain-containing protein [Loa
loa]
gi|307762811|gb|EFO22045.1| cytosolic Fe-S cluster assembly factor [Loa loa]
Length = 447
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 146/406 (35%), Positives = 226/406 (55%), Gaps = 41/406 (10%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
++++QS +FL + + ++++SPQS AS+A G + + + K++G+K +
Sbjct: 80 LVKEQSKPKFLEGLASAQLSVMTVSPQSIASIAYKRGCQTSEAARLIAGIFKNMGMKYVL 139
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
D+S R LTL + +EF +E+ +R P+ + CPG++CYAEK G+ ++P
Sbjct: 140 DSSFGRLLTLSLSYDEF-------KEAHLQR-----PIFTGVCPGFVCYAEKTHGTLLIP 187
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+IS V+SPQ +GA +K ++ +K +P++I+H +VMPC+DKKLEAAR S
Sbjct: 188 HISRVRSPQAMMGALVKDYLARKFDVKPEKIFHASVMPCFDKKLEAAR--------SHSG 239
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
Y D EVD VL+TGEV D I + E+ S L +++ + GSS
Sbjct: 240 NYSD----CREVDCVLSTGEV-DGILDEYNATESFFASEKVGWLNALENGKVISSEGGSS 294
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFK-TIRNSDFREVALEVEGKT-LLKFALCYGFQNL 298
GGYAE + + F E LE K TI++ ++ E+ V+G+T +L A CYGF+N+
Sbjct: 295 GGYAEYIVKR-----FVAESEKPLELKRTIKDKNW-EIIEAVDGETKMLSVAKCYGFRNI 348
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD 358
Q V+K+K KCDY +VE+MACPSGC+NGGGQI+ G S +E K L+ I L
Sbjct: 349 QIHVQKLKRSKCDYDYVEIMACPSGCINGGGQIR---GASTEERKKILDAIELSCSDDNS 405
Query: 359 PFKNPLVRSLYDEW-LEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
+ L R + +EW + P ++T+Y+ V KS NW
Sbjct: 406 EMEKELER-VKEEWSVLNP---DWMNLLYTKYYAVEKSAERISTNW 447
>gi|392593884|gb|EIW83209.1| iron hydrogenase [Coniophora puteana RWD-64-598 SS2]
Length = 618
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 129/377 (34%), Positives = 187/377 (49%), Gaps = 77/377 (20%)
Query: 18 KAVIISLSPQSRASLAEHFG------ISPLQVFKKLTTFLK-SLGVKSIFDTSCSRDLTL 70
K ++S++PQ+ ASLA ++P Q+ +++ F + +LG + ++DT+ +R L L
Sbjct: 124 KVPVLSIAPQTLASLAASVSSGSRAPVAPRQILRRVAAFAREALGFERVYDTTFARHLAL 183
Query: 71 IEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 130
E E+ R + + + LPML+SACPGWICYAEK +LP+I+ KSPQQ
Sbjct: 184 REHVQEYFERRDGAGQDGSGSGSGKLPMLASACPGWICYAEKAHAE-MLPFIARTKSPQQ 242
Query: 131 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 190
+G +K + K G RPDE+YHV VMPCYDKKLEA+R+DF +L +
Sbjct: 243 VMGTLVKAWLAPKWGKRPDEVYHVAVMPCYDKKLEASRQDFYSELYATR----------- 291
Query: 191 EVDSVLTTGEVLDLIQLKAVNFEALEE----------SPLDKMLTNVDDEGHLYGV---- 236
+VD V+TTGE+ L++ K + E S L DD+ L +
Sbjct: 292 DVDCVITTGELELLMREKGWDLSVPVEHEDEPLPLSSSSSSPSLGTPDDDAALPELLTHP 351
Query: 237 AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE--GKTLLKFALCYG 294
SSG Y + + + + + L KT+R +D+ E AL G + + A CYG
Sbjct: 352 GTSSGSYLHALIDAVTRAVAPEPVA--LSVKTVRTADYAEYALARRDTGTVVFRGATCYG 409
Query: 295 FQNLQNIVRKVKM--------------------------------------RKCDYQFVE 316
F+NLQN+VR+V R DY VE
Sbjct: 410 FRNLQNVVRRVGREAGVRVGRGAAGRMAGARVRRRGGAAAATTGSGGGEEDRGLDY--VE 467
Query: 317 VMACPSGCLNGGGQIKP 333
VMACP GC+NGGGQ++P
Sbjct: 468 VMACPGGCVNGGGQLRP 484
>gi|125972863|ref|YP_001036773.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405]
gi|125713088|gb|ABN51580.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405]
Length = 582
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 128/397 (32%), Positives = 211/397 (53%), Gaps = 37/397 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK +D+ + N V++ +P R +L E FG+ P+ +V K+ L LG K
Sbjct: 206 LREKDDIDKVWEALANPELHVVVQTAPAVRVALGEEFGM-PIGSRVTGKMVAALSRLGFK 264
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT + DLT++E E I R K + LP+++S PGWI + E +
Sbjct: 265 KVFDTDTAADLTIMEEGTELINRIK---------NGGKLPLITSCSPGWIKFCEHNYPEF 315
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
L +SS KSP + GA +K + QK G P +++ V++MPC KK EA R +
Sbjct: 316 -LDNLSSCKSPHEMFGAVLKSYYAQKNGIDPSKVFVVSIMPCTAKKFEAQRPEL------ 368
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
P+VD VLTT E+ +I+ ++F +L + D + G ++G
Sbjct: 369 -------SSTGYPDVDVVLTTRELARMIKETGIDFNSLPDKQFDDPMGEASGAGVIFG-- 419
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQ 296
++GG E R + L GK + +E+ +R D +E ++E++G TL K A+ +G
Sbjct: 420 -ATGGVMEAAIRTVGELLSGKPAD-KIEYTEVRGLDGIKEASIELDGFTL-KAAVAHGLG 476
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPKEL-IKTLETIYLEN- 353
N + ++ K+K + DY F+E+MACP GC+NGGGQ I+P ++ K++ + + IY E+
Sbjct: 477 NARKLLDKIKAGEADYHFIEIMACPGGCINGGGQPIQPSSVRNWKDIRCERAKAIYEEDE 536
Query: 354 -VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + +NP ++ LY+E+ +PGS KA + +HT Y
Sbjct: 537 SLPIRKSHENPKIKMLYEEFFGEPGSHKAHELLHTHY 573
>gi|256005733|ref|ZP_05430688.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 2360]
gi|281417062|ref|ZP_06248082.1| hydrogenase, Fe-only [Clostridium thermocellum JW20]
gi|385779219|ref|YP_005688384.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 1313]
gi|419722023|ref|ZP_14249174.1| hydrogenase, Fe-only [Clostridium thermocellum AD2]
gi|419725349|ref|ZP_14252395.1| hydrogenase, Fe-only [Clostridium thermocellum YS]
gi|255990306|gb|EEU00433.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 2360]
gi|281408464|gb|EFB38722.1| hydrogenase, Fe-only [Clostridium thermocellum JW20]
gi|316940899|gb|ADU74933.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 1313]
gi|380771251|gb|EIC05125.1| hydrogenase, Fe-only [Clostridium thermocellum YS]
gi|380781956|gb|EIC11603.1| hydrogenase, Fe-only [Clostridium thermocellum AD2]
Length = 582
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 128/397 (32%), Positives = 211/397 (53%), Gaps = 37/397 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK +D+ + N V++ +P R +L E FG+ P+ +V K+ L LG K
Sbjct: 206 LREKDDIDKVWEALANPELHVVVQTAPAVRVALGEEFGM-PIGSRVTGKMVAALSRLGFK 264
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT + DLT++E E I R K + LP+++S PGWI + E +
Sbjct: 265 KVFDTDTAADLTIMEEGTELINRIK---------NGGKLPLITSCSPGWIKFCEHNYPEF 315
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
L +SS KSP + GA +K + QK G P +++ V++MPC KK EA R +
Sbjct: 316 -LDNLSSCKSPHEMFGAVLKSYYAQKNGIDPSKVFVVSIMPCTAKKFEAQRPEL------ 368
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
P+VD VLTT E+ +I+ ++F +L + D + G ++G
Sbjct: 369 -------SSTGYPDVDVVLTTRELARMIKEAGIDFNSLPDKQFDDPMGEASGAGVIFG-- 419
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQ 296
++GG E R + L GK + +E+ +R D +E ++E++G TL K A+ +G
Sbjct: 420 -ATGGVMEAAIRTVGELLSGKPAD-KIEYTEVRGLDGIKEASIELDGFTL-KAAVAHGLG 476
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPKEL-IKTLETIYLEN- 353
N + ++ K+K + DY F+E+MACP GC+NGGGQ I+P ++ K++ + + IY E+
Sbjct: 477 NARKLLDKIKAGEADYHFIEIMACPGGCINGGGQPIQPSSVRNWKDIRCERAKAIYEEDE 536
Query: 354 -VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + +NP ++ LY+E+ +PGS KA + +HT Y
Sbjct: 537 SLPIRKSHENPKIKMLYEEFFGEPGSHKAHELLHTHY 573
>gi|118347026|ref|XP_001006990.1| Iron only hydrogenase large subunit, C-terminal domain containing
protein [Tetrahymena thermophila]
gi|89288757|gb|EAR86745.1| Iron only hydrogenase large subunit, C-terminal domain containing
protein [Tetrahymena thermophila SB210]
Length = 488
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 132/413 (31%), Positives = 201/413 (48%), Gaps = 122/413 (29%)
Query: 3 EKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDT 62
++QS++EFL + K ++ +S Q+RAS+A HFG+S + + LT F +
Sbjct: 84 QQQSVEEFLLKLQSYKHAVVGISQQARASMAYHFGLSEEHIQRALTYFFQ---------- 133
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
D S+P+LSS CPGW CYAEK +G +++PY+
Sbjct: 134 -------------------------DQLNVQQSVPVLSSECPGWACYAEKAVGEFVIPYM 168
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
S VKSPQQ +G+ +K+ + K+G +I V+VMPCYDKK+E+AR++F
Sbjct: 169 SQVKSPQQVMGSLVKNSLASKMGIESKDILFVSVMPCYDKKVESARKEF----------- 217
Query: 183 RDEGLEIPEVDSVLTTGEVLDLI-------------QLKA----VNFEALEES------- 218
E I +VD VLT E++DL+ Q+K VN EES
Sbjct: 218 --ERNGIKDVDVVLTAQEIMDLLKKVEGQKLVDVQEQIKQAQTNVNNSNDEESKNELISK 275
Query: 219 ----------PLDKM------LTNVDDEGHLYGVAGS------------------SGGYA 244
P + + ++N+ E +L+G + + S Y
Sbjct: 276 EREYIENNIFPYENLDISRIVVSNI--EEYLFGDSQTFDQLLLPILSNIFDSTIGSNDYL 333
Query: 245 ETVFRHAAKTLFGKVIEGHL---EFKTI----RNSDFREVALEVEGKTLLKFALCYGFQN 297
+ + R AA + HL +++ I +NSDF E+ L +G +L FA YG +N
Sbjct: 334 DYIIRRAASDIH------HLNPDQYEIITKQGKNSDFNEIFLVKDGANILSFARVYGLRN 387
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKP-KPGQSPKELIKTLETI 349
+QNI+R ++ KC Y ++E+MACPSGCLNGGGQ+K K+LI+ L+ I
Sbjct: 388 IQNIIRNLRQNKCKYDYIEIMACPSGCLNGGGQLKSLDENMKTKDLIEKLQEI 440
>gi|268607923|ref|ZP_06141654.1| hydrogenase, Fe-only [Ruminococcus flavefaciens FD-1]
Length = 582
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 127/394 (32%), Positives = 196/394 (49%), Gaps = 37/394 (9%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSI 59
EK E ++ I + K V++ +P RA LAE FG +P+ K+ L+ LG +
Sbjct: 211 EKDYTKEVMAAIADPEKTVLVQTAPAVRAGLAECFG-NPIGTNAEGKMVAALRRLGFDKV 269
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
FDT + DLT++E NEF+ R + + LPM++S PGW+ + E +L
Sbjct: 270 FDTDFAADLTIMEEANEFVERVQ---------NGGVLPMITSCSPGWVKFCEHYY-PELL 319
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
P++SS KSPQQ GAT K + +K+G P I V++MPC KK E R+D
Sbjct: 320 PHLSSCKSPQQMFGATAKTYYAEKMGLDPKNIVMVSIMPCTAKKFEIGRDD--------- 370
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS 239
+P+VD LTT E+ +I+ + F +L E D L G ++ G+
Sbjct: 371 ----QSAAGVPDVDYALTTRELGRMIERAGILFNSLPEEKFDDPLGISTGAGVIF---GA 423
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQ 299
+GG E R A TL G + + +R ++ + A G + + G N +
Sbjct: 424 TGGVMEAALRTAVHTLTGNTV---TDLPEVRGTEGIKKATYEVGDLKVNVEVASGLSNAR 480
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADP 359
++ +K CD QF+E+MACP GC+NGGGQ + G I+ L N+ + P
Sbjct: 481 EVLESIKNGTCDAQFIEIMACPGGCVNGGGQPQVPMGVRNFVDIRAERAKVLYNLDKSMP 540
Query: 360 FK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ NP ++ +Y+E+ E+PGS KA + +HT Y
Sbjct: 541 LRQSHENPAIKKVYEEFFEKPGSHKAHEVLHTSY 574
>gi|374295698|ref|YP_005045889.1| hydrogenase, Fe-only [Clostridium clariflavum DSM 19732]
gi|359825192|gb|AEV67965.1| hydrogenase, Fe-only [Clostridium clariflavum DSM 19732]
Length = 591
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 125/377 (33%), Positives = 208/377 (55%), Gaps = 36/377 (9%)
Query: 20 VIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
VI+ +P R +L E FG+ P+ +V + LK LG +FDT + DLT++E E
Sbjct: 235 VIVQTAPAVRVALGEEFGM-PIGSRVTGNMIAALKLLGFDRVFDTDTAADLTIMEEGTEV 293
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
I R K + LP+++S PGWI + E + L +S+ KSP + GA +K
Sbjct: 294 INRIK---------NGGKLPVITSCSPGWIKFCEHYYPEF-LDNLSTCKSPHEMFGAILK 343
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+ +K G P +++ V++MPC KK EAAR + P+VD VLT
Sbjct: 344 SYYAEKEGIDPSKVFVVSIMPCTAKKFEAARPELAAN-------------GYPDVDVVLT 390
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
T E+ +I+ ++F+ + E D + + G ++G ++GG E R A+ L G
Sbjct: 391 TRELARMIKEAGIDFKNVYEEHFDDPMGDASGAGVIFG---ATGGVMEAALRTVAEILSG 447
Query: 258 KVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVE 316
+ I+ +++++ +R + +E +++V G LK A+ +G N + ++ ++K + +Y FVE
Sbjct: 448 QPID-NVDYEQVRGVEGIKEASVKV-GDLTLKAAVAHGLGNARKLLDRIKAGEAEYHFVE 505
Query: 317 VMACPSGCLNGGGQ-IKPKPGQSPKEL-IKTLETIYLEN--VMLADPFKNPLVRSLYDEW 372
+MACP GC+NGGGQ I+P +S +L + + IY E+ + + +NP +++LY+E+
Sbjct: 506 IMACPGGCVNGGGQPIQPSKVRSWTDLRTERAKAIYEEDKELPIRKSHENPRIKALYEEY 565
Query: 373 LEQPGSEKAKKHVHTEY 389
LEQPGS KA K +HT Y
Sbjct: 566 LEQPGSHKAHKLLHTHY 582
>gi|312622464|ref|YP_004024077.1| hydrogenase, fe-only [Caldicellulosiruptor kronotskyensis 2002]
gi|312202931|gb|ADQ46258.1| hydrogenase, Fe-only [Caldicellulosiruptor kronotskyensis 2002]
Length = 579
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 134/397 (33%), Positives = 206/397 (51%), Gaps = 37/397 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK S D + +K K V++ +P R +L E FG+ P+ +V K+ T LK LG
Sbjct: 206 LREKDSTDIVWKALADKNKYVVVQAAPAVRVALGEEFGL-PIGTRVTGKMVTALKMLGFD 264
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT DLT++E E I R K S LP+++S PGWI + E +
Sbjct: 265 KVFDTDTGADLTIMEEGTELINRIK---------SGGKLPLITSCSPGWIKFCEHYFPEF 315
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
L +S+ KSP + GA +K + QK+G P ++ V+VMPC KK EA RE+
Sbjct: 316 -LDNLSTCKSPHEMFGAILKTYFAQKMGIDPANMFVVSVMPCTAKKFEAQREELAAS--- 371
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
P+VD+VLTT E+ +I+ ++F L +S D + + G ++G
Sbjct: 372 ----------GYPDVDAVLTTRELARMIKEAGIDFVNLPDSHFDDPMGDATGAGVIFG-- 419
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQ 296
++GG E R + L GK +E ++E +R + RE ++V G +K A+ +G
Sbjct: 420 -TTGGVMEAALRTVYEVLTGKTLE-NVEITQVRGLEGIREAEIDV-GTMKIKAAVAHGLA 476
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPKELIK-TLETIYLENV 354
N + ++ VK + +Y F+E+MACP GC+ GGGQ I P + ++ K IY E+
Sbjct: 477 NAKKLLEMVKNGEKEYHFIEIMACPGGCIMGGGQPIVPAKVKEKVDVAKLRARAIYDEDR 536
Query: 355 MLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP V+ LY+E+L+ P SEKA +HT Y
Sbjct: 537 SLPIRKSHENPAVKRLYEEFLDHPNSEKAHHILHTHY 573
>gi|387818042|ref|YP_005678387.1| periplasmic [Fe] hydrogenase large subunit [Clostridium botulinum
H04402 065]
gi|322806084|emb|CBZ03651.1| periplasmic [Fe] hydrogenase large subunit [Clostridium botulinum
H04402 065]
Length = 577
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 128/379 (33%), Positives = 198/379 (52%), Gaps = 34/379 (8%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K VI+ +P RA+L E FG+ P + V K+ L+ LG +FDT + DLT++E
Sbjct: 227 KDKVVIVQTAPAIRATLGEEFGLEPGIAVTGKMVAALRQLGFSKVFDTDFAADLTIMEEA 286
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
+EFI R + +LPML+S CPGWI + E ++ SS KSPQQ GA
Sbjct: 287 SEFIHRLEHG---------GTLPMLTSCCPGWIKFFEHNFND-LMDIPSSCKSPQQMFGA 336
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
K ++ +K+ P +I V+VMPC KK EA RE+ + G IP+VD
Sbjct: 337 IAKSYLAEKMKVDPKDIIVVSVMPCLAKKYEAKREEM-----------KRNG--IPDVDI 383
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V++T E+ +I ++F +L+E D L ++ G++GG E R A +
Sbjct: 384 VISTRELAKMIVEAGIDFNSLQEEEFDNPLGESTGASVIF---GTTGGVMEAALRTAYEW 440
Query: 255 LFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
+ ++ +EF +R D RE + ++ T +K A+ G N + ++ ++ K Y
Sbjct: 441 VTKGTLK-DVEFIEVRGEDGIREATVNIK-DTEVKVAIASGLGNARKLLNDIRNGKSKYH 498
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDE 371
+E+MACPSGC++GGGQ P L K E +Y E N + +NP ++ LY+E
Sbjct: 499 MIEIMACPSGCVDGGGQ--PYIYGDTNILKKRTEALYKEDSNKEIRKSHENPYIKKLYEE 556
Query: 372 WLEQPGSEKAKKHVHTEYH 390
+L +P EKA + +HT+Y
Sbjct: 557 YLGKPYGEKAHELLHTKYR 575
>gi|366166522|ref|ZP_09466277.1| hydrogenase, Fe-only [Acetivibrio cellulolyticus CD2]
Length = 582
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 130/395 (32%), Positives = 212/395 (53%), Gaps = 37/395 (9%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSI 59
EK D+ S + N V++ +P R +L E FG+ P+ +V + L+ LG +
Sbjct: 208 EKDDTDKVWSALANPDLHVVVQTAPAVRVALGEEFGM-PIGSRVTSNMVAALRRLGFSKV 266
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
FDT + DLT++E E I R K + LP+++S PGWI + E + L
Sbjct: 267 FDTDTAADLTIMEEGTEVINRIK---------NGGKLPVITSCSPGWIKFCEHNYPEF-L 316
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
+S+ KSP + GA +K + QK G P +++ V++MPC KK EAAR +
Sbjct: 317 ENLSTCKSPHEMFGAVLKSYYAQKEGIDPAKVFVVSIMPCTAKKFEAARPELAAT----- 371
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS 239
Y D VD VLTT E+ +I+ ++F + E D + + G ++G +
Sbjct: 372 -GYAD-------VDVVLTTRELARMIKEAGIDFTNVSEEHFDDPMGDASGAGVIFG---A 420
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNL 298
+GG E R A+ L G+ IE ++E++ +R + +E +++V G LK A+ +G N
Sbjct: 421 TGGVMEAALRTVAEVLSGQSIE-NVEYEQVRGVEGIKEASVKV-GDLTLKAAVAHGLGNA 478
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPKEL-IKTLETIYLEN--V 354
+ ++ K+K + DY FVE+MACP GC+NGGGQ I+P +S +L + + IY E+ +
Sbjct: 479 RKLLDKIKAGEADYHFVEIMACPGGCVNGGGQPIQPSNVRSWTDLRTERAKAIYEEDREL 538
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ +NP V++LY+E+L +PG K+ + +HT Y
Sbjct: 539 PIRKSHENPKVKALYEEYLGEPGGHKSHELLHTHY 573
>gi|268572543|ref|XP_002648987.1| Hypothetical protein CBG21318 [Caenorhabditis briggsae]
Length = 452
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 135/404 (33%), Positives = 209/404 (51%), Gaps = 37/404 (9%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
++E+QS L I K +I++SPQ+ SLA +P + K + +F + GVK +
Sbjct: 85 LVEEQSFGRLLEGIRNSKMAVITISPQTITSLAVKLEKTPEDLAKLIASFFRRHGVKYVL 144
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
D+S +R A E + ++S P+LSSACPG++CYAEK G ++P
Sbjct: 145 DSSFARQFAHSLAYEELLLT-----------PSTSRPLLSSACPGFVCYAEKSHGELLIP 193
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
IS ++SPQ GA +K ++ +K G P +++H VMPC+DKKLE+ E
Sbjct: 194 KISKIRSPQAISGAIVKGYLAKKEGLSPCDVFHAAVMPCFDKKLES------------RE 241
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGV-AGS 239
+R EG EI E D V++T E+L+ + + E +EE + T++ G + G G+
Sbjct: 242 QFRVEGTEIRETDCVVSTAELLEELVKEEGVAEDVEEEEENNWTTSL-SRGIIIGEDGGA 300
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQ 299
SGGYA+ + R G V L +N V G+ +L+ A YGF+N+Q
Sbjct: 301 SGGYADRIVRDFVAQNGGIVKTSKLN----KNMFSTTVESTTTGEIVLRVAKVYGFRNVQ 356
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADP 359
N+VRK+K +K +VEVMACP GC NGGGQ++ + ++ + +E +Y A P
Sbjct: 357 NLVRKMKTKKEKTDYVEVMACPGGCANGGGQVRYETMDEREKRLAQVEELY-----EALP 411
Query: 360 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
N S+ +EW + K + T+Y PV ++ AQ W
Sbjct: 412 RGNSWEESVREEW--KRLDTNYKNLLFTDYKPVETNV-AQTLKW 452
>gi|298711308|emb|CBJ26553.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 686
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 138/398 (34%), Positives = 189/398 (47%), Gaps = 107/398 (26%)
Query: 91 RSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRP-- 148
R L +L+SACPGW+CYAEK LP++S+VKSPQQ +G K + + P
Sbjct: 291 RGPGELLVLTSACPGWVCYAEKT-APEALPFMSTVKSPQQMMGVLAK-RVFPRAWNHPHP 348
Query: 149 ------------DEIYHV------------------------------------TVMPCY 160
DE+ V ++ CY
Sbjct: 349 SVAAAAAVTAAADEVSRVRDSASNGATPAASTLANETLDQSTPPPVRSRGVFHVSIAQCY 408
Query: 161 DKKLEAAREDFVF-QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES- 218
DKKLEA+R+DF LD EVD VLTT EVL+LI+ A +A S
Sbjct: 409 DKKLEASRKDFRHPDLDGDA-----------EVDLVLTTAEVLELIEESASAADATLTST 457
Query: 219 -------------------------------PLDKMLTNVDDEGHLYGV------AGSSG 241
P+ + +VD GV G+S
Sbjct: 458 SPASPGRDAASDYFRRHFPPGDLAEPLAPGFPVGQAAVSVDGLSLFGGVDGEGAAGGNSD 517
Query: 242 GYAETVFRHAAKTLFGKVIEGH-LEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
GY E VFRHAA LFG + G L ++ RN+DFRE +LEV G+ L+FA YGF+N+Q+
Sbjct: 518 GYLEYVFRHAAVELFGVDLAGRPLVYREGRNADFRETSLEVNGQVALRFAYAYGFRNIQS 577
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL---IKTLETIYLENVMLA 357
I+ K + KC Y FVEVMACPSGC+NGGGQIKPK + P++ ++ + + E +
Sbjct: 578 ILAKARRGKCPYHFVEVMACPSGCVNGGGQIKPKKKEGPRDTRLRVERVSEVLREGRVPR 637
Query: 358 DPFKNPLVRSLYDEWL-EQPGSEKAKKHVHTEYHPVVK 394
P NP+V+++Y E + PG +A++ +HT YH V K
Sbjct: 638 GPRDNPVVQAVYSELVGGGPGESRARELLHTSYHNVPK 675
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 1 MLEKQSLDEFLSNINKGK--AVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-GVK 57
++ +QS + + G+ V+ S++PQ+RASLAE FG+SP + +L FL+ GV
Sbjct: 103 LITQQSTGKLREAVASGRYSVVVASITPQARASLAERFGLSPAETHARLLAFLRERHGVH 162
Query: 58 SIFDTSCSRDLTLIEACNEFIARYK--QSQESDDERSNSSLPMLSSACPGWICYAEKQLG 115
+ D+S D +L+EA EF+ R++ S S E + L A G A L
Sbjct: 163 HLVDSSLGADFSLLEAGEEFVQRWRSINSGRSGPEGGRAKL----GAAVGEGAPARPPLA 218
Query: 116 SYILP 120
+++ P
Sbjct: 219 AWVAP 223
>gi|376261922|ref|YP_005148642.1| hydrogenase, Fe-only [Clostridium sp. BNL1100]
gi|373945916|gb|AEY66837.1| hydrogenase, Fe-only [Clostridium sp. BNL1100]
Length = 582
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 199/376 (52%), Gaps = 35/376 (9%)
Query: 20 VIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
V++ +P R +L E FG+ P+ +V K+ L +G +FDT + DLT++E E
Sbjct: 226 VVVQTAPAVRVALGEEFGL-PIGTRVTGKMAAALNHMGFAKVFDTDTAADLTIMEEGTEL 284
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R K + LP+++S PGWI + E + L +SS KSP + GA +K
Sbjct: 285 LNRIK---------NGGKLPVITSCSPGWIKFCEHNYPEF-LENLSSCKSPHEMFGAVLK 334
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+ +K+G P +I+ V+VMPC KK EA R + + +P+VD V+T
Sbjct: 335 TYYAEKMGIDPKKIFVVSVMPCTAKKFEAQRPEL-------------SAIGLPDVDVVIT 381
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
T E+ +I+ ++F LE+ D + N G ++G ++GG E R ++ + G
Sbjct: 382 TRELARMIKESGIDFNNLEDKDFDDPMGNATGAGVIFG---ATGGVMEAALRTVSEIVAG 438
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
K + +E+ +R + + A V G +K A+ G N + ++ +K + Y FVE+
Sbjct: 439 KSFD--IEYAAVRGIEGIKEATVVIGDMKVKAAVANGLGNARKLLDSIKAGEASYDFVEI 496
Query: 318 MACPSGCLNGGGQ-IKPKPGQSPKEL-IKTLETIYLENVMLA--DPFKNPLVRSLYDEWL 373
MACP GC+NGGGQ I+P +S +L + + IY E+V L +NP+++ +YD++
Sbjct: 497 MACPGGCVNGGGQPIQPSSVRSWTDLRAERAKAIYEEDVSLPIRKSHENPVIKEMYDKYF 556
Query: 374 EQPGSEKAKKHVHTEY 389
+PGS KA + +HT Y
Sbjct: 557 GEPGSHKAHEILHTHY 572
>gi|23664246|gb|AAN39277.1| iron hydrogenase precursor [Neocallimastix frontalis]
Length = 389
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 142/408 (34%), Positives = 211/408 (51%), Gaps = 43/408 (10%)
Query: 3 EKQSLDEFLSNIN-KGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIF 60
E+ + E L ++ K K ++ S +P R +LAE F P K+ L+ LG IF
Sbjct: 2 ERNEVIEVLRQLDSKRKILVCSTAPAIRVALAEEFNADPDFNFTGKMVAGLRKLGFDYIF 61
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY--I 118
DT+ S DLT++E E I R + PM +S CPGWI EK SY +
Sbjct: 62 DTNFSADLTIMEEGTELINRL---------NNGGKFPMFTSCCPGWINMVEK---SYPEL 109
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+S+ KSPQQ IGA IK + +KLG ++I HV+VMPC KK EA R +FV +
Sbjct: 110 RENLSTCKSPQQMIGALIKSYFAKKLGVSTEDIIHVSVMPCTAKKGEAKRPEFVQK---- 165
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+G P++D VLTT E+L L++LK VN L + LD L G+L+GV
Sbjct: 166 ----GKDGKNYPDIDYVLTTRELLTLMKLKKVNPAELADDKLDSPLGISSSAGNLFGV-- 219
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHL---EFKTIRNSDFREVAL----EVEGKTL-LKFA 290
+GG E R A+ + G +E + E K +R + + A EGK + ++ A
Sbjct: 220 -TGGVMEAAVR-TAQIITG--VENPIPLGELKAVRGLEGIKAATVPLKTKEGKDINVRAA 275
Query: 291 LCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIY 350
+ G N+Q + K+K ++ ++ FVE+M CP GC+NGGGQ K PK + K ++ +Y
Sbjct: 276 VVSGGANIQKFLEKIKNKEVEFDFVEMMMCPGGCINGGGQPK---SADPKIVTKKMQRMY 332
Query: 351 L--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSI 396
E L +N V+ +Y E+L +P + + +HT Y+ K+I
Sbjct: 333 TMDEQATLRLSHENEEVKQIYKEFLIEPNGHLSHELLHTHYNDRSKAI 380
>gi|226949091|ref|YP_002804182.1| iron hydrogenase 1 [Clostridium botulinum A2 str. Kyoto]
gi|226843824|gb|ACO86490.1| iron hydrogenase 1 [Clostridium botulinum A2 str. Kyoto]
Length = 577
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 131/382 (34%), Positives = 197/382 (51%), Gaps = 40/382 (10%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K VI+ +P RA+L E FG+ P V K+ L+ LG +FDT + DLT++E
Sbjct: 227 KDKVVIVQTAPAIRAALGEEFGLEPGTAVTGKMVAALRQLGFSKVFDTDFAADLTIMEEA 286
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
+EFI R + +LPML+S CPGWI + E ++ SS KSPQQ GA
Sbjct: 287 SEFIHRLEHG---------GTLPMLTSCCPGWIKFFEHNFND-LMDIPSSCKSPQQMFGA 336
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
K ++ +K+ P +I V+VMPC KK EA RE+ + G IP+VD
Sbjct: 337 IAKSYLAEKMKVDPKDIIVVSVMPCLAKKYEAKREEM-----------KRNG--IPDVDI 383
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V++T E+ +I ++F +L+E D L ++ G++GG E R T
Sbjct: 384 VISTRELAKMIVEAGIDFNSLQEEEFDNPLGESTGASVIF---GTTGGVMEAALR----T 436
Query: 255 LFGKVIEGHL---EFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
+ V +G L EF +R D RE + ++ T +K A+ G N + ++ ++ K
Sbjct: 437 AYEWVTKGTLKDVEFIEVRGEDGIREATVNIK-DTEVKVAIASGLGNARKLLNDIRNGKS 495
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSL 368
Y +E+MACPSGC++GGGQ P L K E +Y E N + +NP ++ L
Sbjct: 496 KYHMIEIMACPSGCVDGGGQ--PYIYGDTNILKKRTEALYKEDSNKEIRKSHENPYIKKL 553
Query: 369 YDEWLEQPGSEKAKKHVHTEYH 390
Y+E+L +P EKA + +HT+Y
Sbjct: 554 YEEYLGKPYGEKAHELLHTKYR 575
>gi|222529290|ref|YP_002573172.1| hydrogenase, Fe-only [Caldicellulosiruptor bescii DSM 6725]
gi|222456137|gb|ACM60399.1| hydrogenase, Fe-only [Caldicellulosiruptor bescii DSM 6725]
Length = 579
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 133/397 (33%), Positives = 206/397 (51%), Gaps = 37/397 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK S D + +K K V++ +P R +L E FG+ P+ +V K+ T LK LG
Sbjct: 206 LREKDSTDIVWKALADKNKYVVVQAAPAVRVALGEEFGL-PIGTRVTGKMVTALKMLGFD 264
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT DLT++E E I R K + LP+++S PGWI + E +
Sbjct: 265 KVFDTDTGADLTIMEEGTELINRIK---------NGGKLPLITSCSPGWIKFCEHYFPEF 315
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
L +S+ KSP + GA +K + QK+G P ++ V+VMPC KK EA RE+
Sbjct: 316 -LDNLSTCKSPHEMFGAILKTYFAQKMGIDPANMFVVSVMPCTAKKFEAQREELAAS--- 371
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
P+VD+VLTT E+ +I+ ++F L +S D + + G ++G
Sbjct: 372 ----------GYPDVDAVLTTRELARMIKEAGIDFVNLPDSHFDDPMGDATGAGVIFG-- 419
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQ 296
++GG E R + L GK +E ++E +R + RE ++V G +K A+ +G
Sbjct: 420 -TTGGVMEAALRTVYEVLTGKTLE-NVEITQVRGLEGIREAEIDV-GTMKIKAAVAHGLA 476
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPKELIK-TLETIYLENV 354
N + ++ VK + +Y F+E+MACP GC+ GGGQ I P + ++ K IY E+
Sbjct: 477 NAKKLLEMVKNGEKEYHFIEIMACPGGCIMGGGQPIVPAKVKEKVDVAKLRASAIYDEDR 536
Query: 355 MLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP V+ LY+E+L+ P SEKA +HT Y
Sbjct: 537 SLPIRKSHENPAVKRLYEEFLDHPNSEKAHHILHTHY 573
>gi|168180425|ref|ZP_02615089.1| [Fe] hydrogenase [Clostridium botulinum NCTC 2916]
gi|421837509|ref|ZP_16271670.1| iron hydrogenase 1 [Clostridium botulinum CFSAN001627]
gi|182668697|gb|EDT80675.1| [Fe] hydrogenase [Clostridium botulinum NCTC 2916]
gi|409740335|gb|EKN40640.1| iron hydrogenase 1 [Clostridium botulinum CFSAN001627]
Length = 577
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 131/382 (34%), Positives = 197/382 (51%), Gaps = 40/382 (10%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K VI+ +P RA+L E FG+ P V K+ L+ LG +FDT + DLT++E
Sbjct: 227 KDKVVIVQTAPAIRAALGEEFGLEPGTAVTGKMVAALRQLGFSKVFDTDFAADLTIMEEA 286
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
+EFI R + +LPML+S CPGWI + E ++ SS KSPQQ GA
Sbjct: 287 SEFIHRLEHG---------GTLPMLTSCCPGWIKFFEHNFND-LMDIPSSCKSPQQMFGA 336
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
K ++ +K+ P +I V+VMPC KK EA RE+ + G IP+VD
Sbjct: 337 IAKSYLAEKMKVDPKDIIVVSVMPCLAKKYEAKREEM-----------KRNG--IPDVDI 383
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V++T E+ +I ++F +L+E D L ++ G++GG E R T
Sbjct: 384 VISTRELAKMIVEAGIDFNSLQEEEFDNPLGESTGASVIF---GTTGGVMEAALR----T 436
Query: 255 LFGKVIEGHL---EFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
+ V +G L EF +R D RE + ++ T +K A+ G N + ++ ++ K
Sbjct: 437 AYEWVTKGTLKDVEFIEVRGEDGIREATVNIK-DTEVKVAIASGLGNARKLLNDIRNGKS 495
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSL 368
Y +E+MACPSGC++GGGQ P L K E +Y E N + +NP ++ L
Sbjct: 496 KYHMIEIMACPSGCVDGGGQ--PYIYGDTNILKKRTEALYKEDSNKEIRKSHENPYIKKL 553
Query: 369 YDEWLEQPGSEKAKKHVHTEYH 390
Y+E+L +P EKA + +HT+Y
Sbjct: 554 YEEYLGKPYGEKAHELLHTKYR 575
>gi|153940304|ref|YP_001391107.1| [Fe] hydrogenase [Clostridium botulinum F str. Langeland]
gi|384462136|ref|YP_005674731.1| iron hydrogenase 1 [Clostridium botulinum F str. 230613]
gi|152936200|gb|ABS41698.1| iron hydrogenase 1 [Clostridium botulinum F str. Langeland]
gi|295319153|gb|ADF99530.1| iron hydrogenase 1 [Clostridium botulinum F str. 230613]
Length = 577
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 131/382 (34%), Positives = 197/382 (51%), Gaps = 40/382 (10%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K VI+ +P RA+L E FG+ P V K+ L+ LG +FDT + DLT++E
Sbjct: 227 KDKVVIVQTAPAIRAALGEEFGLEPGTAVTGKMVAALRQLGFSKVFDTDFAADLTIMEEA 286
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
+EFI R + +LPML+S CPGWI + E ++ SS KSPQQ GA
Sbjct: 287 SEFIHRLEHG---------GTLPMLTSCCPGWIKFFEHNFND-LMDIPSSCKSPQQMFGA 336
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
K ++ +K+ P +I V+VMPC KK EA RE+ + G IP+VD
Sbjct: 337 IAKSYLAEKMKVDPKDIIVVSVMPCLAKKYEAKREEM-----------KRNG--IPDVDI 383
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V++T E+ +I ++F +L+E D L ++ G++GG E R T
Sbjct: 384 VISTRELAKMIVEAGIDFNSLQEEEFDNPLGQSTGASVIF---GTTGGVMEAALR----T 436
Query: 255 LFGKVIEGHL---EFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
+ V +G L EF +R D RE + ++ T +K A+ G N + ++ ++ K
Sbjct: 437 AYEWVTKGTLKDVEFIEVRGEDGIREATVNIK-DTEVKVAIASGLGNARKLLNDIRNGKS 495
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSL 368
Y +E+MACPSGC++GGGQ P L K E +Y E N + +NP ++ L
Sbjct: 496 KYHMIEIMACPSGCVDGGGQ--PYIYGDTNILKKRTEALYKEDSNKEIRKSHENPYIKKL 553
Query: 369 YDEWLEQPGSEKAKKHVHTEYH 390
Y+E+L +P EKA + +HT+Y
Sbjct: 554 YEEYLGKPYGEKAHELLHTKYR 575
>gi|312135115|ref|YP_004002453.1| hydrogenase, fe-only [Caldicellulosiruptor owensensis OL]
gi|311775166|gb|ADQ04653.1| hydrogenase, Fe-only [Caldicellulosiruptor owensensis OL]
Length = 579
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 133/399 (33%), Positives = 207/399 (51%), Gaps = 41/399 (10%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK S D + +K K V++ +P R +L E FG+ P+ +V K+ T LK LG
Sbjct: 206 LREKDSTDIVWKALADKNKYVVVQTAPAVRVALGEEFGL-PIGTRVTGKMVTALKMLGFD 264
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT + DLT++E E I R K + LP+++S PGWI + E +
Sbjct: 265 KVFDTDTAADLTIMEEGTELINRIK---------NGGKLPLITSCSPGWIKFCEHYFPEF 315
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
L +S+ KSP + GA +K + QK+G P ++ V+VMPC KK EA RE+
Sbjct: 316 -LDNLSTCKSPHEMFGAILKTYFAQKMGIDPANMFVVSVMPCTAKKFEAQREELAAS--- 371
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
P+VD+VLTT E+ +I+ ++F L +S D+ + + G ++G
Sbjct: 372 ----------GYPDVDAVLTTRELARMIKEAGIDFVNLPDSHFDEPMGDATGAGVIFG-- 419
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQ 296
++GG E R + L GK +E ++E +R + RE ++V G +K A+ +G
Sbjct: 420 -TTGGVMEAALRTVYEVLTGKTLE-NVEITQVRGLEGIREAEIDV-GSMKIKAAVAHGLA 476
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE----TIYLE 352
N + ++ VK + +Y F+E+MACP GC+ GGGQ P KE + + IY E
Sbjct: 477 NAKKLLEMVKNGEKEYHFIEIMACPGGCIMGGGQ--PIVHAKIKEKVDVAKLRASAIYDE 534
Query: 353 NVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ L +NP V+ LY+E+L+ P SEKA +HT Y
Sbjct: 535 DRSLPIRKSHENPTVKRLYEEFLDHPNSEKAHHILHTHY 573
>gi|220929645|ref|YP_002506554.1| hydrogenase, Fe-only [Clostridium cellulolyticum H10]
gi|219999973|gb|ACL76574.1| hydrogenase, Fe-only [Clostridium cellulolyticum H10]
Length = 582
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 126/396 (31%), Positives = 206/396 (52%), Gaps = 35/396 (8%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK D+ S + +K V++ +P R +L E FG+ P+ +V K+ L LG
Sbjct: 206 LREKDDTDKVWSALADKELHVVVQTAPAVRVALGEEFGL-PIGTRVTGKMAAALNHLGFA 264
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT + DLT++E E + R K + LP+++S PGWI + E +
Sbjct: 265 KVFDTDTAADLTIMEEGTELLNRIK---------NGGKLPVITSCSPGWIKFCEHNYPEF 315
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
L +SS KSP + GA +K + +K+G P +I+ V+VMPC KK EA R +
Sbjct: 316 -LENLSSCKSPHEMFGAVLKTYYAEKMGIDPKKIFVVSVMPCTAKKFEAQRPEL------ 368
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
+P+VD V+TT E+ +I+ ++F LE+ D + N G ++G
Sbjct: 369 -------SATGLPDVDVVITTRELARMIKEAGIDFNNLEDMDFDDPMGNATGAGVIFG-- 419
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R ++ + GK E +E+ +R + + A G +K A+ G N
Sbjct: 420 -ATGGVMEAALRTVSEIVAGKSFE-DIEYTAVRGIEGIKEATVAIGDMKVKAAVANGLGN 477
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPKEL-IKTLETIYLENVM 355
+ ++ +K + Y FVE+MACP GC+NGGGQ I+P +S +L + + IY E+V
Sbjct: 478 ARKLLDSIKAGEAAYDFVEIMACPGGCVNGGGQPIQPSSVRSWTDLRTERAKAIYEEDVS 537
Query: 356 LA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP+++ +YD++ +PGS KA + +HT Y
Sbjct: 538 LPIRKSHENPVIKEMYDKYFGEPGSHKAHEILHTHY 573
>gi|340507726|gb|EGR33647.1| nuclear prelamin A recognition factor, putative [Ichthyophthirius
multifiliis]
Length = 429
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/344 (34%), Positives = 180/344 (52%), Gaps = 68/344 (19%)
Query: 3 EKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDT 62
++QS+DEF++ K +IS+SPQSR SLA HFG+ + K LT F
Sbjct: 73 QQQSVDEFINKSQTFKHTVISISPQSRVSLAYHFGVDEFYIQKALTKF------------ 120
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
F+ Y + SLP+++S CPGW YAEK +G +I+ ++
Sbjct: 121 --------------FLQNY---------NTKVSLPIITSECPGWTLYAEKAVGEFIIKHM 157
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
S +KSPQQ +G +K QKLG+ +I VT+MPCYDKK+E+AR DF E+
Sbjct: 158 SQIKSPQQLMGCLVKDLFAQKLGYNNQDILFVTIMPCYDKKVESARRDF-------EKNQ 210
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 242
+E P +++ L E + Q ++ + + L K+L + S
Sbjct: 211 FNELYINPNIETYLMHDEYIQQQQQQSQ--QNQDTDFLLKVLE----------YSNGSND 258
Query: 243 YAETVFRHAAKTLFGKVIEGH-LEFKTIRNSD-------------FREVALEVEGKTLLK 288
Y + + R AA LF + + + ++ K +N+D F+E+ ++ G+ +L
Sbjct: 259 YLDYIIRRAAFDLFQLLPDQYQIQNKQGKNTDFNVKYIIFTYIILFQEIFIQYNGQKILN 318
Query: 289 FALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK 332
FA YG +N+QNI R +KM KC +Q++E++ACPSGCLNGGGQ+K
Sbjct: 319 FARIYGLRNIQNITRNIKMNKCQFQYIEILACPSGCLNGGGQLK 362
>gi|302871900|ref|YP_003840536.1| hydrogenase, Fe-only [Caldicellulosiruptor obsidiansis OB47]
gi|302574759|gb|ADL42550.1| hydrogenase, Fe-only [Caldicellulosiruptor obsidiansis OB47]
Length = 579
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 132/399 (33%), Positives = 207/399 (51%), Gaps = 41/399 (10%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK S D + +K K V++ +P R +L E FG+ P+ +V K+ T LK LG
Sbjct: 206 LREKDSTDIVWKALADKNKYVVVQTAPAVRVALGEEFGL-PIGTRVTGKMVTALKMLGFD 264
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT + DLT++E E I R K + LP+++S PGWI + E +
Sbjct: 265 KVFDTDTAADLTIMEEGTELINRIK---------NGGKLPLITSCSPGWIKFCEHYFPEF 315
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
L +S+ KSP + GA +K + QK+G P ++ V+VMPC KK EA RE+
Sbjct: 316 -LDNLSTCKSPHEMFGAILKTYFAQKMGIDPANMFVVSVMPCTAKKFEAQREELAAS--- 371
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
P+VD+VLTT E+ +I+ ++F L +S D + + G ++G
Sbjct: 372 ----------GYPDVDAVLTTRELARMIKEAGIDFVNLPDSHFDDPMGDATGAGVIFG-- 419
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQ 296
++GG E R + L GK +E ++E +R + RE ++V G +K A+ +G
Sbjct: 420 -TTGGVMEAALRTVYEVLTGKTLE-NVEITQVRGFEGIREAEIDV-GSMKIKAAVAHGLS 476
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE----TIYLE 352
N + ++ VK + +Y F+E+MACP GC+ GGGQ P KE + + IY E
Sbjct: 477 NAKKLLEMVKNGEKEYHFIEIMACPGGCIMGGGQ--PIVHAKVKEKVDVAKLRASAIYDE 534
Query: 353 N--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ +++ +NP V+ LY+E+L P SEKA +HT Y
Sbjct: 535 DRSLVIRKSHENPTVKRLYEEFLGHPNSEKAHHILHTHY 573
>gi|4927278|gb|AAD33071.1| hydrogenase-1 [Clostridium thermocellum]
Length = 579
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 127/397 (31%), Positives = 210/397 (52%), Gaps = 37/397 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK +D+ + N V++ +P R +L E FG+ P+ +V K+ L LG K
Sbjct: 204 LREKDDIDKVWEALANPELHVVVQTAPAVRVALGEEFGM-PIGSRVTGKMVAALSRLGFK 262
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT + DLT++E E I R K + LP+++S PGWI + E +
Sbjct: 263 KVFDTDTAADLTIMEEGTELINRIK---------NGGKLPLITSCSPGWIKFCEHNYPEF 313
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
L +SS KSP + GA +K + QK G P +++ ++MPC KK EA R +
Sbjct: 314 -LDNLSSCKSPHEMFGAVLKSYYAQKNGIDPSKVFVGSIMPCTAKKFEAQRPEL------ 366
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
P+VD VLTT E+ +I+ ++F +L + D + G ++G
Sbjct: 367 -------SSTGYPDVDVVLTTRELARMIKETGIDFNSLPDKQFDDPMGEASGAGVIFG-- 417
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQ 296
++GG E R + L GK + +E+ +R D +E ++E++G TL K A+ +G
Sbjct: 418 -ATGGVMEAAIRTVGELLSGKPAD-KIEYTEVRGLDGIKEASIELDGFTL-KAAVAHGLG 474
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPKEL-IKTLETIYLEN- 353
N + ++ K+K + DY F+E+MACP GC+NGGGQ I+P ++ K++ + + IY E+
Sbjct: 475 NARKLLDKIKAGEADYHFIEIMACPGGCINGGGQPIQPSSVRNWKDIRCERAKAIYEEDE 534
Query: 354 -VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + +NP ++ LY+E+ +PGS KA + +HT Y
Sbjct: 535 SLPIRKSHENPKIKMLYEEFFGEPGSHKAHELLHTHY 571
>gi|225569030|ref|ZP_03778055.1| hypothetical protein CLOHYLEM_05109 [Clostridium hylemonae DSM
15053]
gi|225161829|gb|EEG74448.1| hypothetical protein CLOHYLEM_05109 [Clostridium hylemonae DSM
15053]
Length = 583
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 130/400 (32%), Positives = 198/400 (49%), Gaps = 43/400 (10%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK + L I + K V++ +P RA L E FG P+ V K+ L+ +G
Sbjct: 210 LYEKDYTQQILDAIADPDKYVVVQTAPSVRAGLGEEFGY-PMGTDVEGKMAAALRRVGFD 268
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT + DLT++E E + R K + LP+++S PGWI Y E
Sbjct: 269 KVFDTDWAADLTIMEEATELLDRVK---------NGGVLPLITSCSPGWIKYCEHYFPD- 318
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+ ++SS KSPQQ GA +K + +K G P +I V+VMPC KK E R+D
Sbjct: 319 MTEHLSSCKSPQQMFGAMLKTYFAEKEGIDPKKIVSVSVMPCTAKKFEIGRDD------- 371
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
+ +P+VD +TT E+ LI+ + F L + D D G G A
Sbjct: 372 ------QDAAGVPDVDIAITTRELARLIKRCGIEFTVLPDEKFD------DPMGESTGAA 419
Query: 238 ---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCY 293
G++GG E R A + L G+ + +L+F +R ++ +E + V G + K A+
Sbjct: 420 VIFGATGGVMEAALRTAVEVLTGEEL-ANLDFTDVRGTEGVKEASYNVAGMDV-KVAVAS 477
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
G N + ++ KVK + DY F+E+M CP GC+NGGGQ + ++ + L N
Sbjct: 478 GLNNARTLLNKVKSGEADYHFIEIMGCPGGCVNGGGQPQVSGDVRNFTDVRGIRASVLYN 537
Query: 354 VMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
A P + NP ++ LYDE+L +PGS KA + +HT Y
Sbjct: 538 NDAAKPIRKSHENPAIKKLYDEYLGEPGSHKAHETLHTSY 577
>gi|148379807|ref|YP_001254348.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 3502]
gi|153932525|ref|YP_001384105.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 19397]
gi|153935257|ref|YP_001387645.1| [Fe] hydrogenase [Clostridium botulinum A str. Hall]
gi|148289291|emb|CAL83387.1| putative catalytic subunit of iron-only hydrogenase [Clostridium
botulinum A str. ATCC 3502]
gi|152928569|gb|ABS34069.1| iron hydrogenase 1 [Clostridium botulinum A str. ATCC 19397]
gi|152931171|gb|ABS36670.1| iron hydrogenase 1 [Clostridium botulinum A str. Hall]
Length = 577
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 128/379 (33%), Positives = 197/379 (51%), Gaps = 34/379 (8%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K VI+ +P RA+L E FG+ P V K+ L+ LG +FDT + DLT++E
Sbjct: 227 KDKIVIVQTAPAIRAALGEEFGLEPGTTVTGKMVAALRQLGFSKVFDTDFAADLTIMEEA 286
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
+EFI R + +LPML+S CPGWI + E ++ SS KSPQQ GA
Sbjct: 287 SEFIHRLEHG---------GTLPMLTSCCPGWIKFFEHNFND-LMDIPSSCKSPQQMFGA 336
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
K ++ +K+ P +I V+VMPC KK EA RE+ + G IP+VD
Sbjct: 337 IAKSYLAEKMKVDPKDIIVVSVMPCLAKKYEAKREEM-----------KRNG--IPDVDI 383
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V++T E+ +I ++F +L+E D L ++ G++GG E R A +
Sbjct: 384 VISTRELAKMIVEAGIDFNSLQEEEFDNPLGESTGASVIF---GTTGGVMEAALRTAYEW 440
Query: 255 LFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
+ ++ +EF +R D RE + ++ T +K A+ G N + ++ ++ K Y
Sbjct: 441 VTKGTLK-DVEFIEVRGEDGIREATVNIK-DTEVKVAIASGLGNARKLLNDIRNGKSKYH 498
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDE 371
+E+MACPSGC++GGGQ P L K E +Y E N + +NP ++ LY+E
Sbjct: 499 MIEIMACPSGCVDGGGQ--PYIYGDTNILKKRTEALYKEDSNKEIRKSHENPYIKKLYEE 556
Query: 372 WLEQPGSEKAKKHVHTEYH 390
+L +P EKA + +HT+Y
Sbjct: 557 YLGKPYGEKAHELLHTKYR 575
>gi|335048205|ref|ZP_08541225.1| ferredoxin hydrogenase [Parvimonas sp. oral taxon 110 str. F0139]
gi|333758005|gb|EGL35563.1| ferredoxin hydrogenase [Parvimonas sp. oral taxon 110 str. F0139]
Length = 574
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 205/381 (53%), Gaps = 36/381 (9%)
Query: 14 INKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIE 72
++K K VI+ +P R +L E FG+ P V K+ T L+++G +FDT + DLT +E
Sbjct: 223 MDKTKTVIVQTAPAVRVALGEEFGMEPGTVVTGKMVTALRNIGFDYVFDTDFAADLTTME 282
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
EF++R+++ + +LP+L+S CP W+ + E +L SS KSP +
Sbjct: 283 EAKEFVSRFEKGE---------NLPILTSCCPSWVNFIENNF-PEMLHIPSSCKSPHEMF 332
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ K + +K+ P +I V+VMPC KK E+AR + ++GL +V
Sbjct: 333 GSVAKSYFAEKMNIDPKDIVVVSVMPCVAKKYESARPEL-----------SNKGLS--DV 379
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VL+T E+ +I+ A++F LE+S D ++ G ++G S+GG E R A
Sbjct: 380 DYVLSTREIAHMIKDCAMDFPKLEDSDFDSIMGESSGAGVIFG---STGGVMEAALRTAY 436
Query: 253 KTLFGKVIEG--HLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
+ G+ ++ + E K +R F+E +E++GK + K A+ G N + ++ +K ++
Sbjct: 437 NMITGEDLQNVEYTELKDLRG--FKEAEIEIKGKKI-KAAVVSGLGNARKLLNSIKSKEK 493
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSL 368
Y +E+MACP GC+ GGGQ P + K + I+ E N + +KNP ++ +
Sbjct: 494 TYDIIEIMACPGGCIAGGGQ--PFIHGDTDIIEKRMHGIHREDRNKSIRLSYKNPSIQKI 551
Query: 369 YDEWLEQPGSEKAKKHVHTEY 389
Y+E+L +PG E+A +HT Y
Sbjct: 552 YNEYLGEPGGERAHHLLHTTY 572
>gi|302387722|ref|YP_003823544.1| hydrogenase, Fe-only [Clostridium saccharolyticum WM1]
gi|302198350|gb|ADL05921.1| hydrogenase, Fe-only [Clostridium saccharolyticum WM1]
Length = 581
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 135/401 (33%), Positives = 208/401 (51%), Gaps = 45/401 (11%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK S+DE + I ++ K VI+ +P RA L E FG P+ V K+ L+ LG
Sbjct: 206 LYEKSSIDEVAAAIADRSKHVIVQTAPAVRAGLGEEFGY-PIGTNVEGKMAAALRRLGFD 264
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT+ S DLT++E +EFI R + + LPM++S PGWI Y E
Sbjct: 265 KVFDTNFSADLTIMEEAHEFIDRVQ---------NGGVLPMITSCSPGWIKYCEHYFPD- 314
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+ +SS KSPQQ GA K + +K+G +P++I V+VMPC KK E R+D
Sbjct: 315 MTENLSSCKSPQQMFGAIAKSYYAEKMGLKPEDIVSVSVMPCTAKKFEIGRDD------- 367
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
+ P+VD +TT E+ +I+ + F L + D L G G A
Sbjct: 368 ------QDANGSPDVDYSMTTRELARMIKQAGIRFTELPDEDFDTPL------GLGTGAA 415
Query: 238 ---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCY 293
G++GG E R A ++L G+ +E EF +R + +E + V G + A+
Sbjct: 416 VIFGATGGVMEAALRTAVESLTGEELE-KPEFTDVRGTKGIKEASYRV-GDMDVNVAVAS 473
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-IKTL--ETIY 350
G N + ++ +VK + +Y F+E+M CP GC+NGGGQ + +PG I++L + +Y
Sbjct: 474 GLGNARELLNRVKSGEANYHFIEIMGCPGGCVNGGGQPQ-QPGYVRNTTDIRSLRAKVLY 532
Query: 351 LENV--MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
E+ + +NP ++ LY+ +L +PGSEKA +HT Y
Sbjct: 533 DEDAAKTIRKSHENPAIKELYETFLGEPGSEKAHHLLHTTY 573
>gi|312127639|ref|YP_003992513.1| hydrogenase, fe-only [Caldicellulosiruptor hydrothermalis 108]
gi|311777658|gb|ADQ07144.1| hydrogenase, Fe-only [Caldicellulosiruptor hydrothermalis 108]
Length = 579
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 133/397 (33%), Positives = 205/397 (51%), Gaps = 37/397 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK S D + +K K V++ +P R +L E FG+ P+ +V K+ T LK LG
Sbjct: 206 LREKDSTDIVWKALADKNKYVVVQTAPAVRVALGEEFGL-PIGTRVTGKMVTALKMLGFD 264
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT DLT++E E I R K + LP+++S PGWI + E +
Sbjct: 265 KVFDTDTGADLTIMEEGTELINRIK---------NGGKLPLITSCSPGWIKFCEHYFPEF 315
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
L +S+ KSP + GA +K + QK+G P ++ V+VMPC KK EA RE+
Sbjct: 316 -LDNLSTCKSPHEMFGAILKTYFAQKMGIDPANMFVVSVMPCTAKKFEAQREELAAS--- 371
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
P+VD+VLTT E+ +I+ ++F L +S D + + G ++G
Sbjct: 372 ----------GYPDVDAVLTTRELARMIKEAGIDFVNLPDSHFDDPMGDATGAGVIFG-- 419
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQ 296
++GG E R + L GK +E ++E +R + RE ++V G +K A+ +G
Sbjct: 420 -TTGGVMEAALRTVYEVLTGKTLE-NVEITQVRGLEGIREAEIDV-GSMKIKAAVAHGLA 476
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPKELIK-TLETIYLENV 354
N + ++ VK + +Y F+E+MACP GC+ GGGQ I P + ++ K IY E+
Sbjct: 477 NAKKLLEMVKNGEKEYHFIEIMACPGGCIMGGGQPIVPAKVKEKVDVAKLRASAIYDEDR 536
Query: 355 MLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP V+ LY+E+L P SEKA +HT Y
Sbjct: 537 SLPIRKSHENPAVKRLYEEFLGHPNSEKAHHILHTHY 573
>gi|160935017|ref|ZP_02082403.1| hypothetical protein CLOLEP_03893 [Clostridium leptum DSM 753]
gi|156866470|gb|EDO59842.1| hydrogenase, Fe-only [Clostridium leptum DSM 753]
Length = 366
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 126/381 (33%), Positives = 196/381 (51%), Gaps = 36/381 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K V++ +P RA+L E FG+ P+ V K+ L+ LG +FDT D+T++E +
Sbjct: 10 KHVVVQTAPSVRAALGEEFGM-PIGTNVEGKMVAALRRLGFDKVFDTDFGADMTIMEEAH 68
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
EFI R + + LP+++S PGWI + E +LP +SS KSPQQ GA
Sbjct: 69 EFIDRVQ---------NGGVLPLITSCSPGWIKFCEFYY-PELLPNLSSCKSPQQMQGAL 118
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
IK + P +I V+VMPC KK E +R+D + +P+VD V
Sbjct: 119 IKTWYAETHNIDPKDIVSVSVMPCTAKKFEISRDD-------------ENAAGVPDVDVV 165
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
LT E+ +I+ ++ L + D + ++G ++GG E R AA TL
Sbjct: 166 LTVRELARMIKRANIDLTMLPDEKFDPTMDVSTGAAVIFG---ATGGVMEAALRTAADTL 222
Query: 256 FGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
GK ++ ++++ +R +D +E V G + K A+ G N I++KVK + DY F
Sbjct: 223 TGKSLDS-IDYEEVRGTDGIKEAVYNVAGMDV-KVAVASGLSNANEILKKVKNGEADYHF 280
Query: 315 VEVMACPSGCLNGGGQ-IKPKPGQSPKELIKTLETIYLE---NVMLADPFKNPLVRSLYD 370
+E+M CP GC+NGGG I+P ++ ++ K + E N+ L NP+V+ Y
Sbjct: 281 IEIMCCPGGCVNGGGMPIQPSSVRNFVDIRKERAKVLYEEDKNLPLRKSHDNPVVKKCYA 340
Query: 371 EWLEQPGSEKAKKHVHTEYHP 391
E+L +PGS KA + +HT Y P
Sbjct: 341 EYLGEPGSHKAHEILHTTYTP 361
>gi|133778355|gb|AAI23769.1| MGC143399 protein [Bos taurus]
Length = 362
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 146/228 (64%), Gaps = 26/228 (11%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
++ K V+IS+SPQSRASLA F ++P +KLT F K +G +FDT+ SR+ +L+E+
Sbjct: 107 DQQKLVVISVSPQSRASLAVRFQLNPTDTARKLTAFFKKIGAHYVFDTAFSRNFSLLESQ 166
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
EF+ R++ ++D E++ LP+L+SACPGWICYAEK GS +LP+IS+ +SPQQ +G+
Sbjct: 167 REFVRRFRG--QADPEQA---LPVLTSACPGWICYAEKTHGSTLLPHISTARSPQQVMGS 221
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
+K Q+ PD++YH TVMPCYDKKLEA+R DF SQE RD VD
Sbjct: 222 LVKDFFAQQQHLTPDKVYHATVMPCYDKKLEASRPDFF----SQEHQTRD-------VDC 270
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 242
V+TTGEV L++ + V+ LE +PLD LY + G GG
Sbjct: 271 VITTGEVFKLLEEEGVSLSELEPAPLDS----------LYVITGPVGG 308
>gi|170756324|ref|YP_001781395.1| [Fe] hydrogenase [Clostridium botulinum B1 str. Okra]
gi|429247282|ref|ZP_19210540.1| [Fe] hydrogenase [Clostridium botulinum CFSAN001628]
gi|169121536|gb|ACA45372.1| iron hydrogenase 1 [Clostridium botulinum B1 str. Okra]
gi|428755686|gb|EKX78299.1| [Fe] hydrogenase [Clostridium botulinum CFSAN001628]
Length = 577
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 130/382 (34%), Positives = 197/382 (51%), Gaps = 40/382 (10%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K VI+ +P RA+L E FG+ P V K+ L+ LG +FDT + DLT++E
Sbjct: 227 KDKVVIVQTAPAIRAALGEEFGLEPGTTVTGKMVAALRQLGFSKVFDTDFAADLTIMEEA 286
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
+EFI R + +LPML+S CPGWI + E ++ SS KSPQQ GA
Sbjct: 287 SEFIHRLEHG---------GTLPMLTSCCPGWIKFFEHNFND-LMDIPSSCKSPQQMFGA 336
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
K ++ +K+ P +I V+VMPC KK EA RE+ + G IP+VD
Sbjct: 337 IAKSYLAEKMKVDPKDIIVVSVMPCLAKKYEAKREEM-----------KRNG--IPDVDI 383
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V++T E+ +I ++F +L+E D L ++ G++GG E R T
Sbjct: 384 VISTRELAKMIVEAGIDFNSLQEEEFDNPLGESTGASVIF---GTTGGVMEAALR----T 436
Query: 255 LFGKVIEGHL---EFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
+ V +G L EF +R + RE + ++ T +K A+ G N + ++ ++ K
Sbjct: 437 AYEWVTKGTLKDVEFIEVRGEEGIREATVNIK-DTEVKVAIASGLGNARKLLNDIRNGKS 495
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSL 368
Y +E+MACPSGC++GGGQ P L K E +Y E N + +NP ++ L
Sbjct: 496 KYHMIEIMACPSGCVDGGGQ--PYIYGDTNILKKRTEALYKEDSNKQIRKSHENPYIKKL 553
Query: 369 YDEWLEQPGSEKAKKHVHTEYH 390
Y+E+L +P EKA + +HT+Y
Sbjct: 554 YEEYLGKPYGEKAHELLHTKYR 575
>gi|312793481|ref|YP_004026404.1| hydrogenase, fe-only [Caldicellulosiruptor kristjanssonii 177R1B]
gi|344995973|ref|YP_004798316.1| hydrogenase, Fe-only [Caldicellulosiruptor lactoaceticus 6A]
gi|312180621|gb|ADQ40791.1| hydrogenase, Fe-only [Caldicellulosiruptor kristjanssonii 177R1B]
gi|343964192|gb|AEM73339.1| hydrogenase, Fe-only [Caldicellulosiruptor lactoaceticus 6A]
Length = 579
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 132/397 (33%), Positives = 205/397 (51%), Gaps = 37/397 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK S D + +K K V++ +P R +L E FG+ P+ +V K+ T LK LG
Sbjct: 206 LREKDSTDIVWKALADKNKYVVVQTAPAVRVALGEEFGL-PIGTRVTGKMVTALKMLGFD 264
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT DLT++E E I R K + LP+++S PGWI + E +
Sbjct: 265 KVFDTDTGADLTIMEEGTELINRIK---------NGGKLPLITSCSPGWIKFCEHYFPEF 315
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
L +S+ KSP + GA +K + QK+G P ++ V++MPC KK EA RE+
Sbjct: 316 -LDNLSTCKSPHEMFGAILKTYFAQKMGIDPANMFVVSIMPCTAKKFEAQREELAAS--- 371
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
P+VD+VLTT E+ +I+ ++F L +S D + + G ++G
Sbjct: 372 ----------GYPDVDAVLTTRELARMIKEAGIDFVNLPDSHFDDPMGDATGAGVIFG-- 419
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQ 296
++GG E R + L GK +E ++E +R + RE ++V G +K A+ +G
Sbjct: 420 -TTGGVMEAALRTVYEVLTGKTLE-NVEITQVRGLEGIREAEIDV-GSMKIKAAVAHGLA 476
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPKELIK-TLETIYLENV 354
N + ++ VK + +Y F+E+MACP GC+ GGGQ I P + ++ K IY E+
Sbjct: 477 NAKKLLEMVKNGEKEYHFIEIMACPGGCIMGGGQPIVPAKVKEKIDVAKLRASAIYDEDR 536
Query: 355 MLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP V+ LY+E+L P SEKA +HT Y
Sbjct: 537 SLPIRKSHENPAVKRLYEEFLGHPNSEKAHHILHTHY 573
>gi|355674710|ref|ZP_09059704.1| hypothetical protein HMPREF9469_02741 [Clostridium citroniae
WAL-17108]
gi|354813811|gb|EHE98416.1| hypothetical protein HMPREF9469_02741 [Clostridium citroniae
WAL-17108]
Length = 596
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 135/406 (33%), Positives = 205/406 (50%), Gaps = 46/406 (11%)
Query: 8 DEFLSNINKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCS 65
D F + + K VI+ +P RA L E FG+ P+ V K+ L+ LG +FDT+ S
Sbjct: 214 DVFAAIADPAKHVIVQTAPAVRAGLGEEFGL-PIGTDVEGKMAAALRRLGFDKVFDTNFS 272
Query: 66 RDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSV 125
DLT++E +EF+ R + + LP+++S PGW+ Y E + +SS
Sbjct: 273 ADLTIMEEAHEFLDRVQ---------NGGVLPLITSCSPGWVKYCEHYFPD-MTENLSSC 322
Query: 126 KSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDE 185
KSPQQ GA K + +K G P I V+VMPC KK E R+D +
Sbjct: 323 KSPQQMFGAIAKSYYAEKAGIDPKNIVSVSVMPCTAKKFEIGRDD-------------QD 369
Query: 186 GLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA---GSSGG 242
+P+VD +TT E+ +I+ + F L + D D G G A G++GG
Sbjct: 370 ANGVPDVDISITTRELARMIKKSGIRFLDLPDEKFD------DPLGLGTGAAVIFGATGG 423
Query: 243 YAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCYGFQNLQNI 301
E R A +TL G+ + L+F+ +R + +E V G + K A+ G N + +
Sbjct: 424 VMEAALRTAVETLTGEELP-KLDFEEVRGTKGIKEATYNVAGMDV-KVAVASGLGNAKEL 481
Query: 302 VRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYLENVMLADPF 360
+ KVK + DY F+E+M CP GC+NGGGQ + +PG I+ L L N+ A+P
Sbjct: 482 LEKVKSGEADYHFIEIMGCPGGCVNGGGQPQ-QPGYVRNTTDIRGLRAKVLYNIDSANPI 540
Query: 361 K----NPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHN 402
+ NP ++ LY +L +PGSE+A +HT Y V ++I ++ N
Sbjct: 541 RKSHENPAIKELYSTYLGEPGSERAHHLLHTTY--VKRTINKKIVN 584
>gi|210616162|ref|ZP_03290965.1| hypothetical protein CLONEX_03184 [Clostridium nexile DSM 1787]
gi|210149924|gb|EEA80933.1| hypothetical protein CLONEX_03184 [Clostridium nexile DSM 1787]
Length = 594
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 131/397 (32%), Positives = 199/397 (50%), Gaps = 41/397 (10%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSI 59
EK +DE L I + K V++ +P RA+L E FG P+ V ++ L+ +G +
Sbjct: 221 EKDYIDEVLEAIADPEKHVVVQTAPSVRAALGEEFGY-PIGTDVEGRMVAALRRIGFDKV 279
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
FDT S DLT++E EFI R + + LP+++S PGWI Y E +
Sbjct: 280 FDTDFSADLTIMEEAREFIDRVQ---------NGGVLPLITSCSPGWIKYCEHYFPD-MT 329
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
+SS KSPQQ GA K + +K G P +I V+VMPC KK E RED
Sbjct: 330 ENLSSCKSPQQMFGAITKTYYAEKTGMDPKDIVCVSVMPCTAKKFEIGRED--------- 380
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS 239
+P+VD +TT E+ LI+ ++F L E D L ++G +
Sbjct: 381 ----QNAAGVPDVDIAITTRELARLIKRTGLDFTGLPEENFDDPLGESTGAAVIFG---T 433
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNL 298
+GG E R A +TL G+ + ++F+ +R +D +E V G + K A+ G QN
Sbjct: 434 TGGVMEAALRTAVETLTGEEL-AKVDFEDVRGTDGIKEATYNVAGMDV-KVAVASGLQNA 491
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT----LETIYLENV 354
+ ++ KV + DY F+E+M CP GC+NGGGQ P+ + + +Y +
Sbjct: 492 KELLDKVNAGEADYHFIEIMGCPGGCVNGGGQ--PQVSADVRNFTDVRAARAKVLYDNDA 549
Query: 355 MLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
A +NP ++ LY+E+L +PGS+KA + +HT Y
Sbjct: 550 KKAIRKSHENPSIQKLYEEFLGRPGSQKAHEILHTSY 586
>gi|392392257|ref|YP_006428859.1| hydrogenase, Fe-only [Desulfitobacterium dehalogenans ATCC 51507]
gi|390523335|gb|AFL99065.1| hydrogenase, Fe-only [Desulfitobacterium dehalogenans ATCC 51507]
Length = 575
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 195/379 (51%), Gaps = 41/379 (10%)
Query: 20 VIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
V++ +P R +L E FG+ + V K+ T L+ LG +FDT+ S DLT++E E +
Sbjct: 225 VVVQTAPAVRVALGEEFGLPVGINVRGKMVTALRRLGFDKVFDTTFSADLTIMEEGTELL 284
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R +Q LP+++S PGW+ + E + L +SS KSPQQ GA K
Sbjct: 285 QRIQQ---------GGKLPLITSCSPGWVKFCEHNFTDF-LDNLSSCKSPQQMFGAVAKS 334
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ QK G P +I+ V+VMPC KK EA RE+ + Q +VD+V+TT
Sbjct: 335 YYPQKAGLDPKKIFVVSVMPCTAKKYEADREEMMVQGRK-------------DVDAVITT 381
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ +I+ +NF LE+S D++L G ++ ++GG E R A L G+
Sbjct: 382 RELAKMIKQAGINFNDLEDSEYDELLGTSTGAGVIF---ANTGGVMEAALRTVADILTGQ 438
Query: 259 VIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+E +E+ +R +E + ++G +K A+ +G N ++ +++ +Y F+EV
Sbjct: 439 DLEA-IEYSAVRGFEGIKEATVHIDGLE-IKAAVVHGTGNAAQLLDRIREGTANYHFIEV 496
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD-------PFKNPLVRSLYD 370
M CP GC+NGGGQ P K + + + + D +NP ++ +Y+
Sbjct: 497 MGCPGGCINGGGQ----PILMDKSRTQEVNRLRAAGIYALDRQAVKRKSHENPEIKKIYE 552
Query: 371 EWLEQPGSEKAKKHVHTEY 389
E+LE+PGS ++ + +HT Y
Sbjct: 553 EYLEKPGSHRSHELLHTHY 571
>gi|301103566|ref|XP_002900869.1| nuclear prelamin A recognition factor-like protein [Phytophthora
infestans T30-4]
gi|262101624|gb|EEY59676.1| nuclear prelamin A recognition factor-like protein [Phytophthora
infestans T30-4]
Length = 380
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 175/299 (58%), Gaps = 46/299 (15%)
Query: 1 MLEKQSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKS 58
++ +QS E L + + K V+++LSPQSRASLA HF + + V +KL T ++LGV
Sbjct: 92 LISQQSFKEMLDVLATKEHKRVVVTLSPQSRASLAAHFEMPVVAVHRKLVTLFRNLGVTL 151
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSS----------------------- 95
+ D++CS D L+E+ EF+ RY+ Q++ R SS
Sbjct: 152 VIDSTCSGDFALLESRAEFLHRYRNHQKTIWARPPSSVAVSSAKTEFLEPSTTANPLQDP 211
Query: 96 ---LPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIY 152
+PML+S+CPGWICYAEK + I P+I + KSPQQ G+ IK + + G +P E+Y
Sbjct: 212 LRAMPMLASSCPGWICYAEKSQPNAI-PFIDTTKSPQQIAGSIIKRFVSGEHGVKPSEVY 270
Query: 153 HVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF 212
HV VMPC+DKKLEA+R+DF D+++ T +VD VL T E+++LI+ V+F
Sbjct: 271 HVAVMPCFDKKLEASRKDF---QDAEDATK--------DVDCVLATTEIIELIESLNVDF 319
Query: 213 EALE---ESPLDKMLTNVDDEG-HLYGVA--GSSGGYAETVFRHAAKTLFGKVIEGHLE 265
+LE +P + ML+ V ++G + G + SSGG+ E +FR+AAK LF + G L+
Sbjct: 320 ASLELATLTPEEVMLSGVSEDGSSVLGSSQNASSGGHLEHIFRYAAKELFNVDVNGPLD 378
>gi|390471046|ref|XP_003734423.1| PREDICTED: LOW QUALITY PROTEIN: cytosolic Fe-S cluster assembly
factor NARFL [Callithrix jacchus]
Length = 367
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/206 (48%), Positives = 137/206 (66%), Gaps = 21/206 (10%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
+ V++S+SPQSRASLA F ++P +KLT+F K +GV +FDT+ SR+ +L+E+ EF
Sbjct: 112 RLVVVSVSPQSRASLAARFQLNPTDTARKLTSFFKKIGVHFVFDTAFSRNFSLLESQREF 171
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R++ +LP+L+SACPGWICYAEK GS+ILP+IS+ +SPQQ +G+ +K
Sbjct: 172 VRRFR----------GQALPVLASACPGWICYAEKTHGSFILPHISTARSPQQVMGSLVK 221
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
Q+ PD++YHVTVMPCYDKKLEA+R DF +Q RD VD VLT
Sbjct: 222 DFFAQQQHVTPDKVYHVTVMPCYDKKLEASRPDFF----NQAHQTRD-------VDCVLT 270
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKM 223
TGEVL L++ + V+ LE PLD +
Sbjct: 271 TGEVLTLLEEEGVSLPDLEPVPLDSL 296
>gi|392569939|gb|EIW63112.1| iron hydrogenase [Trametes versicolor FP-101664 SS1]
Length = 620
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 131/349 (37%), Positives = 178/349 (51%), Gaps = 82/349 (23%)
Query: 43 VFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 101
V +++T F +S LG ++DT+ +R ++L+E EF R K + LPML+S
Sbjct: 154 VLRRVTAFCQSALGFAHVYDTTFARHISLLEHAKEFAERKK---------GDGKLPMLAS 204
Query: 102 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 161
ACPGW+CYAEK S +LPYIS KSPQQ +G +K + K G +PD+IYHVTVMPCYD
Sbjct: 205 ACPGWVCYAEKTH-SEMLPYISQTKSPQQVMGTLVKEWLGAKWGKQPDQIYHVTVMPCYD 263
Query: 162 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKA------VNFEAL 215
KKLEA+R+DF ++ S RD VD V+TTGE+ L+Q K V E L
Sbjct: 264 KKLEASRQDFYSEVYST----RD-------VDCVITTGELQLLMQDKGWELSMPVPDENL 312
Query: 216 EESP----LDKMLTNVDDEGHLYGV-------AGSSGGYAETVFRHAAKTLFG-KVIEGH 263
P +D + N + G +G+ SSG Y ++ T V+E
Sbjct: 313 PPRPHPTAIDAAM-NATNTGADHGLPELLMHPGTSSGSYMHSLISTLTSTAADPSVLE-- 369
Query: 264 LEFKTIRNSDFREVAL--EVEGKTLLKFALCYGFQNLQNIVRKV---------------- 305
L KT+R +D+ E L G + + A CYGF+NLQN+VRKV
Sbjct: 370 LSTKTVRTADYEEYTLTDRSTGAVVFRGAKCYGFRNLQNVVRKVGREAGVQVGRGAAGRM 429
Query: 306 ---------------------KMRKCDYQFVEVMACPSGCLNGGGQIKP 333
+ Y +VEVMACP GC+NGGGQ++P
Sbjct: 430 AGLRARGRAVRRGGTAGTEGAPQEERGYDYVEVMACPGGCVNGGGQLRP 478
>gi|325681306|ref|ZP_08160835.1| ferredoxin hydrogenase [Ruminococcus albus 8]
gi|324106997|gb|EGC01284.1| ferredoxin hydrogenase [Ruminococcus albus 8]
Length = 580
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 129/382 (33%), Positives = 194/382 (50%), Gaps = 39/382 (10%)
Query: 18 KAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K VI +P RA+L E FG +P+ V K+ ++ LG +F+ + DLT++E N
Sbjct: 224 KKVIFFTAPSIRATLGEEFG-NPVGTNVEGKMVAAIRRLGPDQVFNMDVTADLTIVEEAN 282
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
E I R + +LPM +S CPGW+ + E + LP++SS KSPQQ GA
Sbjct: 283 ELIERIT---------TGGTLPMFTSCCPGWVKFCEHFYPDF-LPHLSSCKSPQQMFGAV 332
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+K + QK P ++ V+V+PC KK E RE+ + EG + +VD
Sbjct: 333 LKSYYAQKNNIDPKNLFVVSVIPCTAKKFEVTREE------------QREG-DFDDVDVA 379
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
LTT E+ +I+ ++F +L + D G ++G ++GG E R AA L
Sbjct: 380 LTTRELGRMIREAGIDFNSLPDEQFDDPFETASGAGAIFG---ATGGVMEAALRTAAVKL 436
Query: 256 FGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
GK LEF +R + + A G +K A+ G N + IV + + DYQFV
Sbjct: 437 DGKC--EPLEFTEVRGTKGIKEATYTVGGVTVKVAVASGLANAREIVEGIIKGEKDYQFV 494
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELI--KTLETIYL----ENVMLADPFKNPLVRSLY 369
E+MACP GC+NGGGQ P S + + KTL L ++ L ++P++ LY
Sbjct: 495 EIMACPGGCINGGGQ--PVQSDSVRNFVDLKTLRAKALYDADSSMKLRMSHESPVMDMLY 552
Query: 370 DEWLEQPGSEKAKKHVHTEYHP 391
E+ E+PG+ KA +++HT Y P
Sbjct: 553 KEFFEKPGAHKAHEYLHTTYVP 574
>gi|291521599|emb|CBK79892.1| hydrogenases, Fe-only [Coprococcus catus GD/7]
Length = 581
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 126/395 (31%), Positives = 201/395 (50%), Gaps = 37/395 (9%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSI 59
EK + DE I + K V++ +P RA L E FG P+ V K+ L+ LG +
Sbjct: 209 EKDNTDEIFEAIADPDKYVVVQTAPSVRAGLGEEFGY-PMGTDVEGKMVAALRRLGFDKV 267
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
FDT + DLT++E +EF+ R + + LP+++S PGWI Y E +
Sbjct: 268 FDTDFAADLTIMEEAHEFLDRVQ---------NGGKLPLITSCSPGWIKYCEHYFPD-MT 317
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
+SS KSPQQ GAT+K + +K+G P +I V+VMPC KK E R+D
Sbjct: 318 ENLSSCKSPQQMFGATLKTYYAEKMGIDPKKIVSVSVMPCTAKKFEIGRDD--------- 368
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS 239
++ +P+VD +TT E+ +I+ + F L + D L ++ G+
Sbjct: 369 ----EDAAGVPDVDIAITTRELARMIKKVGIMFTELPDEEFDSPLGESTGAAVIF---GA 421
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNL 298
+GG E R A +TL G+ ++ ++EF+ +R ++ +E V G +K A+ G N
Sbjct: 422 TGGVMEAALRTAVETLTGEELK-NVEFQEVRGTEGIKEATYNVAGMD-VKVAVASGLGNA 479
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD 358
+ ++ KVK + DY F+E+M CP GC+NGGGQ + + ++ + L + A
Sbjct: 480 RKLLDKVKSGEADYHFIEIMGCPGGCVNGGGQPQVRGSVRNFTDVRAIRAKALYDNDAAK 539
Query: 359 PFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ NP ++ LY E+ +PGS KA + +HT Y
Sbjct: 540 SIRKSHENPAIQQLYKEFFGEPGSHKAHEILHTSY 574
>gi|239627946|ref|ZP_04670977.1| hydrogenase [Clostridiales bacterium 1_7_47_FAA]
gi|239518092|gb|EEQ57958.1| hydrogenase [Clostridiales bacterium 1_7_47FAA]
Length = 596
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 135/404 (33%), Positives = 203/404 (50%), Gaps = 46/404 (11%)
Query: 8 DEFLSNINKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCS 65
D F + + K VI+ +P RA L E FG+ P+ V K+ L+ LG +FDT+ S
Sbjct: 214 DVFAAIADPSKHVIVQTAPAVRAGLGEEFGL-PIGTDVEGKMAAALRRLGFDKVFDTNFS 272
Query: 66 RDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSV 125
DLT++E +EF+ R + + LPM++S PGW+ Y E + +S+
Sbjct: 273 ADLTIMEEAHEFLDRVQ---------NGGVLPMITSCSPGWVKYCEHYFPD-MTENLSTC 322
Query: 126 KSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDE 185
KSPQQ GA K + +K G P +I V+VMPC KK E RED +
Sbjct: 323 KSPQQMFGAIAKSYYAEKAGIDPKDIVSVSVMPCTAKKFEIGRED-------------QD 369
Query: 186 GLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA---GSSGG 242
+P+VD +TT E+ +I+ + F L + D L G G A G++GG
Sbjct: 370 ANGVPDVDISITTRELARMIKKAGIRFLDLPDEKFDDPL------GLGTGAAVIFGATGG 423
Query: 243 YAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCYGFQNLQNI 301
E R A ++L G+ + L+F+ +R + +E V G + K A+ G N + +
Sbjct: 424 VMEAALRTAVESLTGEELP-KLDFEEVRGTKGIKEATYNVAGMDV-KVAVASGLGNAKEL 481
Query: 302 VRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYLENVMLADPF 360
+ KVK + DY F+E+M CP GC+NGGGQ + +PG I+ L L N+ A+P
Sbjct: 482 LEKVKSGEADYHFIEIMGCPGGCVNGGGQPQ-QPGHVRNTTDIRGLRAKVLYNIDSANPI 540
Query: 361 K----NPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQL 400
+ NP ++ LY +L +PGSE A +HT Y V ++I Q
Sbjct: 541 RKSHENPAIKELYAAYLGEPGSEVAHHLLHTTY--VKRTINKQF 582
>gi|168184519|ref|ZP_02619183.1| iron hydrogenase 1 [Clostridium botulinum Bf]
gi|237795251|ref|YP_002862803.1| [Fe] hydrogenase [Clostridium botulinum Ba4 str. 657]
gi|182672373|gb|EDT84334.1| iron hydrogenase 1 [Clostridium botulinum Bf]
gi|229262419|gb|ACQ53452.1| [Fe] hydrogenase [Clostridium botulinum Ba4 str. 657]
Length = 577
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 126/379 (33%), Positives = 197/379 (51%), Gaps = 34/379 (8%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K VI+ +P RA+L E FG+ P +V K+ + L+ LG +FDT + DLT++E
Sbjct: 227 KDKVVIVQTAPAIRAALGEEFGLEPGTRVTGKMVSALRQLGFNKVFDTDFAADLTIMEEA 286
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
+EFI R + +LPML+S CPGWI + E ++ SS KSPQQ G
Sbjct: 287 SEFIHRLEHG---------GTLPMLTSCCPGWIKFFEHNFND-LMDIPSSCKSPQQMFGT 336
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
K ++ +K+ P +I V+VMPC KK EA RE+ + G IP+VD
Sbjct: 337 IAKSYLAEKMKVDPKDIIVVSVMPCLAKKYEAKREEM-----------KRNG--IPDVDI 383
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V++T E+ +I ++F +L+E D L ++G ++GG E R A +
Sbjct: 384 VISTRELSKMIIEAGIDFNSLQEEEFDNPLGESTGASVIFG---TTGGVMEAALRTAYEW 440
Query: 255 LFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
+ ++ +EF +R D RE + + +K A+ G N + ++ ++ K +Y
Sbjct: 441 VTKDTLK-DVEFIGVRGEDGIREATVNIN-DIEVKVAIASGLGNARKLLNDIRDGKSEYH 498
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDE 371
+E+MACPSGC++GGGQ P L K E +Y E N + +NP ++ LY+E
Sbjct: 499 MIEIMACPSGCVDGGGQ--PYIYGDTNILKKRTEALYKEDSNKEIRKSHENPYIKKLYEE 556
Query: 372 WLEQPGSEKAKKHVHTEYH 390
+L +P EKA + +HT+Y
Sbjct: 557 YLGKPYGEKAHELLHTKYR 575
>gi|308459710|ref|XP_003092170.1| CRE-OXY-4 protein [Caenorhabditis remanei]
gi|308254065|gb|EFO98017.1| CRE-OXY-4 protein [Caenorhabditis remanei]
Length = 457
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 131/414 (31%), Positives = 210/414 (50%), Gaps = 51/414 (12%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
++E+QS L I K ++++SPQ+ S+A SP + K+++ F GVK +
Sbjct: 84 LVEEQSFGRLLEGIRNSKMAVVTISPQAITSMAVKLKKSPQIIAKQISAFFHRHGVKYVL 143
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
D+S +R A E ++ +S P+LSSACPG++CYAEK G ++P
Sbjct: 144 DSSFARRFAHSLAFEELVST-----------PTTSRPLLSSACPGFVCYAEKSHGELLIP 192
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
IS ++SPQ GA +K ++ ++ P +++H VMPC+DKKLEA+RE
Sbjct: 193 KISKIRSPQAISGAIVKGYLAKRENLSPCDVFHAAVMPCFDKKLEASREQL--------- 243
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQ-LKAVNFEALEE-SPLDKMLTNVDDEGHLYGV-A 237
RD EI E D V++T E+L+ IQ ++ + E +E+ ++ N +G + G
Sbjct: 244 KVRD--TEIRETDCVVSTAELLEEIQKMEDQDSEDVEKRGEEEEEWMNALGKGIIIGEDG 301
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEV--EGKTLLKFALCYGF 295
G+SGGYA+ + + G V L N + +E G +L+ A YGF
Sbjct: 302 GASGGYADRIVHDFVEKNGGIVKTTKL------NKNMYSTIVESPESGDVILRVAKVYGF 355
Query: 296 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM 355
+N+QN+VRK+K +K +VEVMACP GC NGGGQ++ + +E + +E Y
Sbjct: 356 RNVQNLVRKMKTKKEKTDYVEVMACPGGCANGGGQVRYETMAEREEKLIDVEREY----- 410
Query: 356 LADPFKNPLVRSLYDEWLEQPGSE------KAKKHVHTEYHPVVKSITAQLHNW 403
+ L R + W+E+ +E + + T+Y PV ++ Q W
Sbjct: 411 ------DDLPRGIGMNWVEKVKTEWEGLDGNYRNLLFTDYKPVETNV-GQTLKW 457
>gi|323484502|ref|ZP_08089868.1| hypothetical protein HMPREF9474_01619 [Clostridium symbiosum
WAL-14163]
gi|323692563|ref|ZP_08106796.1| hydrogenase [Clostridium symbiosum WAL-14673]
gi|323402280|gb|EGA94612.1| hypothetical protein HMPREF9474_01619 [Clostridium symbiosum
WAL-14163]
gi|323503429|gb|EGB19258.1| hydrogenase [Clostridium symbiosum WAL-14673]
Length = 582
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 200/396 (50%), Gaps = 39/396 (9%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ--VFKKLTTFLKSLGVKSI 59
EK D+ + I + K VI+ +P RA+L E FG P+ V K+ + LK LG +
Sbjct: 209 EKDFTDKVFAAIADPAKHVIVQTAPAVRAALGEEFGY-PIGTGVEGKMVSALKMLGFDKV 267
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
FDT S DLT++E +EF+ R + + LP+++S PGWI Y E +
Sbjct: 268 FDTDFSADLTIMEEAHEFLDRVQ---------NGGVLPLITSCSPGWIKYCEHYFPD-MT 317
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
+SS KSPQQ GA K + QK G P +I V++MPC KK E R D Q
Sbjct: 318 KNLSSCKSPQQMFGAIAKSYYAQKAGIDPKDIVSVSIMPCTAKKFEVGR-------DHQA 370
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS 239
+P+VD LTT E+ +I+ + F AL ++ D L ++G +
Sbjct: 371 AN------GVPDVDIALTTRELARMIRKAGIKFTALPDASYDSPLGLSTGAATIFG---A 421
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCYGFQNL 298
+GG E R A +TL G+ ++ L+F +R + +E V G + K A+ G N
Sbjct: 422 TGGVMEAALRTAVETLTGEELKA-LDFTEVRGTAGIKEATYNVAGMDV-KVAVASGLNNA 479
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYLENVMLA 357
+ ++ KVK + Y F+E+M CP GC+NGGGQ + +PG + I+ L L N A
Sbjct: 480 RELLNKVKSGEASYHFIEIMGCPGGCVNGGGQPQ-QPGYVRDTVDIRGLRAQVLYNSDKA 538
Query: 358 DPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + NP ++ LY +L +PGSEKA +HT Y
Sbjct: 539 NTIRKSHENPAIKELYASFLGEPGSEKAHHLLHTSY 574
>gi|170760857|ref|YP_001787172.1| [Fe] hydrogenase [Clostridium botulinum A3 str. Loch Maree]
gi|169407846|gb|ACA56257.1| iron hydrogenase 1 [Clostridium botulinum A3 str. Loch Maree]
Length = 577
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 130/382 (34%), Positives = 196/382 (51%), Gaps = 40/382 (10%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K VI+ +P RA+L E FG+ P V K+ L+ LG +FDT + DLT++E
Sbjct: 227 KDKIVIVQTAPAIRAALGEEFGLEPGTTVTGKMVAALRQLGFSKVFDTDFAADLTIMEEA 286
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
+EFI R + +LPML+S CPGWI + E ++ SS KSPQQ GA
Sbjct: 287 SEFIHRLEHG---------GTLPMLTSCCPGWIKFFEHNFND-LMDIPSSCKSPQQMFGA 336
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
K ++ +K+ P +I V+VMPC KK EA RE+ + G IP+VD
Sbjct: 337 IAKSYLAEKMKVDPKDIIVVSVMPCLAKKYEAKREEM-----------KRNG--IPDVDI 383
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V++T E+ +I ++F +L+E D L ++G ++GG E R T
Sbjct: 384 VISTRELAKMIVEAGIDFNSLKEEEFDNPLGKSTGASVIFG---TTGGVMEAALR----T 436
Query: 255 LFGKVIEGHL---EFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
+ V +G L EF +R + RE + + T +K A+ G N + ++ ++ K
Sbjct: 437 AYEWVTKGTLKDVEFIEVRGEEGIREATVNIN-DTEVKVAIASGLGNARKLLNDIRNGKS 495
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSL 368
Y +E+MACPSGC++GGGQ P L K E +Y E N + +NP ++ L
Sbjct: 496 KYHMIEIMACPSGCVDGGGQ--PYIYGDTNILKKRTEALYKEDSNKEIRKSHENPYIKKL 553
Query: 369 YDEWLEQPGSEKAKKHVHTEYH 390
Y+E+L +P EKA + +HT+Y
Sbjct: 554 YEEYLGKPYGEKAHELLHTKYR 575
>gi|160936127|ref|ZP_02083500.1| hypothetical protein CLOBOL_01023 [Clostridium bolteae ATCC
BAA-613]
gi|158440937|gb|EDP18661.1| hypothetical protein CLOBOL_01023 [Clostridium bolteae ATCC
BAA-613]
Length = 581
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 133/395 (33%), Positives = 200/395 (50%), Gaps = 44/395 (11%)
Query: 6 SLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTS 63
+ D F + + K VI+ +P RA L E FG+ P+ V K+ L+ LG +FDT+
Sbjct: 212 TADVFAAIADPKKHVIVQTAPAVRAGLGEEFGL-PIGTDVEGKMAAALRRLGFDKVFDTN 270
Query: 64 CSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYIS 123
S DLT++E +EFI R + + LP+++S PGW+ Y E + +S
Sbjct: 271 FSADLTIMEEAHEFIDRVQ---------NGGVLPLITSCSPGWVKYCEHYFPD-MTENLS 320
Query: 124 SVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYR 183
S KSPQQ GA K + +K G P +I V+VMPC KK E RED
Sbjct: 321 SCKSPQQMFGAIAKSYYAEKAGIDPKDIVSVSVMPCTAKKFEIGRED------------- 367
Query: 184 DEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA---GSS 240
++ +P+VD +TT E+ +I+ + F L + D L G G A G++
Sbjct: 368 EDANGMPDVDISITTRELARMIKKAGIKFLDLPDEEFDAPL------GLGTGAAVIFGAT 421
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCYGFQNLQ 299
GG E R A +TL G+ + +F +R + +E A V G + K A+ G N +
Sbjct: 422 GGVMEAALRTAVETLTGEELP-KPDFTEVRGTKGIKEAAYNVAGMEV-KIAVASGLGNAR 479
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYLENVMLAD 358
++ KVK + +Y F+E+M CP GC+NGGGQ + +PG I+ L L ++ A+
Sbjct: 480 ELLNKVKSGEANYHFIEIMGCPGGCVNGGGQPQ-QPGHVRNTTDIRGLRAKVLYDIDTAN 538
Query: 359 PFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
P + NP ++ LY +L +PGSEKA +HT Y
Sbjct: 539 PIRKSHENPAIKELYATYLGEPGSEKAHHLLHTTY 573
>gi|387233127|gb|AFJ73533.1| iron hydrogenase precursor [Neocallimastix frontalis]
Length = 636
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 140/410 (34%), Positives = 211/410 (51%), Gaps = 43/410 (10%)
Query: 1 MLEKQSLDEFLSNIN-KGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ E+ + E L ++ K K ++ S +P R +LAE F P K+ L+ LG
Sbjct: 247 ITERNEVIEVLRQLDSKRKILVCSTAPAIRVALAEEFNADPDFNFTGKMVAGLRKLGFDY 306
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY- 117
IFDT+ S DLT++E E I R + PM +S CPGWI EK SY
Sbjct: 307 IFDTNFSADLTIMEEGTELINRLN---------NGGKFPMFTSCCPGWINMVEK---SYP 354
Query: 118 -ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLD 176
+ +S+ KSPQQ IGA IK + +KLG ++I HV+VMPC KK EA R +FV +
Sbjct: 355 ELRENLSTCKSPQQMIGAVIKSYFAKKLGVSTEDIIHVSVMPCTAKKGEAKRPEFVQK-- 412
Query: 177 SQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGV 236
+G P++D VLTT E+L L++LK VN L + D L G+L+GV
Sbjct: 413 ------GKDGKNYPDIDYVLTTRELLTLMKLKKVNPAELADDKFDSPLGISSSAGNLFGV 466
Query: 237 AGSSGGYAETVFRHAAKTLFGKVIEGHL---EFKTIRNSDFREVAL----EVEGKTL-LK 288
+GG E R A+ + G +E + E K +R + + A EGK + ++
Sbjct: 467 ---TGGVMEAAVR-TAQIITG--VENPIPLGELKAVRGLEGIKAATVPLKTKEGKDINVR 520
Query: 289 FALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLET 348
A+ G N+Q + K+K ++ ++ FVE+M CP GC+NGGGQ K PK + K ++
Sbjct: 521 AAVVSGGANIQKFLEKIKNKEVEFDFVEMMMCPGGCINGGGQPK---SADPKIVTKKMQR 577
Query: 349 IYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSI 396
+Y E L +N ++ +Y E+L +P + + +HT Y+ K+I
Sbjct: 578 MYTMDEQATLRLSHENEEIKQIYKEFLIEPNGHLSHELLHTHYNDRSKAI 627
>gi|324509319|gb|ADY43923.1| Cytosolic Fe-S cluster assembly factor [Ascaris suum]
Length = 450
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 119/352 (33%), Positives = 197/352 (55%), Gaps = 32/352 (9%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
++++QS L + ++++SPQS S+A GI + + + K LGV+ +
Sbjct: 79 LIQEQSTPMLLQGLATCSVGVVTVSPQSVCSIAAKRGIEAQKTARLIARHFKRLGVRYVL 138
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
D+S R LTL + +EF+ R ++ P+L+SACPG++CYAEK G ++P
Sbjct: 139 DSSFGRYLTLALSYDEFVERRHEA------------PILTSACPGFVCYAEKTHGDLLVP 186
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+IS V+SPQ +GA +K ++ + + PD+I+H TVMPC+DKKLEA+R F +
Sbjct: 187 HISRVRSPQAMMGALVKDYLARSISVEPDKIFHATVMPCFDKKLEASRPQFANKC----- 241
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD-KMLTNVDDEGHLYGVAGS 239
EVD VL+T EV L+ A + E + ++ L ++ + G
Sbjct: 242 ---------REVDCVLSTAEVDKLLDEAAGDDENEVDIAIEVNWLNAFENGIIIGSPGGP 292
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKT-LLKFALCYGFQNL 298
SGGYAE + R + + ++ + +T + + + + ++G++ LLK A CYGF+N+
Sbjct: 293 SGGYAEYIVR---RFISDSKVDRMIIRRTQKMKNLEAIEV-IDGESVLLKVAKCYGFRNI 348
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIY 350
QN+V+ +K K +Y +VEVMACPSGC NGGGQI+ + ++L+ ++ Y
Sbjct: 349 QNLVQMMKRGKAEYDYVEVMACPSGCANGGGQIRAEKADMRQKLLDSVVDNY 400
>gi|421074329|ref|ZP_15535365.1| hydrogenase, Fe-only [Pelosinus fermentans JBW45]
gi|392527556|gb|EIW50646.1| hydrogenase, Fe-only [Pelosinus fermentans JBW45]
Length = 574
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 124/376 (32%), Positives = 193/376 (51%), Gaps = 31/376 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ +P R +L E + + K+ L+ LG +FDT+ S DLT++E E
Sbjct: 224 KHVVVQTAPAVRVALGEALDLPQGTIVTGKMVAALRRLGFDRVFDTNFSADLTIMEEGFE 283
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R K + LPM++S PGW+ +AE + +L ++S+ KSPQQ GA +
Sbjct: 284 LLDRLK---------NGGKLPMITSCSPGWVNFAELKYPD-LLEHLSTAKSPQQMFGALV 333
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +K G P +I V VMPC KK EA RE+F R G + +VD VL
Sbjct: 334 KTYYAEKAGIDPKDIISVAVMPCTAKKAEAGREEF-----------RSSGYQ--DVDYVL 380
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ + +NF AL D + G ++ G++GG E R + +
Sbjct: 381 TTSELAMMIREQGLNFNALPSEEYDAPMGISTGAGVIF---GATGGVMEAALRTVYEVVT 437
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
GK +E ++FKT+R + +E ++V G +K A+ + N + ++ KV+ + DY F+
Sbjct: 438 GKELE-CIDFKTVRGLEGIKEAEVQV-GDLTIKVAVAHTLSNAKILMEKVRKGEADYHFI 495
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQ 375
E+MACP GC+ G GQ + ++ I + N M +NP V LYD WL +
Sbjct: 496 EIMACPGGCIGGAGQPIVMATELRQKRIDAIYQCDTANTM-RKSHQNPAVTELYDTWLGE 554
Query: 376 PGSEKAKKHVHTEYHP 391
P EK+ +HT YHP
Sbjct: 555 PLGEKSHHLLHTHYHP 570
>gi|317057597|ref|YP_004106064.1| hydrogenase, Fe-only [Ruminococcus albus 7]
gi|315449866|gb|ADU23430.1| hydrogenase, Fe-only [Ruminococcus albus 7]
Length = 580
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 128/381 (33%), Positives = 192/381 (50%), Gaps = 41/381 (10%)
Query: 18 KAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K V+ +P RA+L E FG +P+ V K+ ++ LG +IF+ + DLT++E N
Sbjct: 224 KKVVFFTAPSIRATLGEEFG-NPVGTNVEGKMVAAIRRLGDVNIFNMDVTADLTIMEEAN 282
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
E I R + + +LPM +S CPGW+ + E + LP++SS KSPQQ GA
Sbjct: 283 ELIERIQ---------NKGTLPMFTSCCPGWVKFCEHFYPDF-LPHLSSCKSPQQMFGAL 332
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+K + CQK G P ++ V+V+PC KK E RE+ + Y D VD
Sbjct: 333 LKSYYCQKNGIDPKNLFVVSVIPCTAKKFEVTREE------QRNGDYDD-------VDVA 379
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
LTT E+ +I+ ++F AL + D G ++G ++GG E R AA L
Sbjct: 380 LTTRELGRMIREAGIDFNALPDEKFDDPFEIASGAGAIFG---ATGGVMEAALRTAAVKL 436
Query: 256 FGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
GK LEF +R + + A G +K A+ G N + I+ + + DYQFV
Sbjct: 437 DGKC--EPLEFHDVRGTKGLKEATYTVGGVTVKVAVASGLANAREIIDGILSGERDYQFV 494
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD-------PFKNPLVRSL 368
E+MACP GC+NGGGQ P + + + L+ I + + AD ++P+ L
Sbjct: 495 EIMACPGGCINGGGQ--PVQSDAVRNFVD-LKAIRAKALYDADSSMKLRMSHESPVCDML 551
Query: 369 YDEWLEQPGSEKAKKHVHTEY 389
Y E+ E PG+ A K++HT Y
Sbjct: 552 YKEFFEAPGAHNAHKYLHTTY 572
>gi|332671079|ref|YP_004454087.1| hydrogenase, Fe-only [Cellulomonas fimi ATCC 484]
gi|332340117|gb|AEE46700.1| hydrogenase, Fe-only [Cellulomonas fimi ATCC 484]
Length = 1088
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 120/391 (30%), Positives = 196/391 (50%), Gaps = 45/391 (11%)
Query: 10 FLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLT 69
F + + K V+ ++P R+ +A+H+G++P Q + ++ +G +FD + + DLT
Sbjct: 699 FSAMHDPDKVVVGFVAPAVRSVIADHYGLAPEQASGFMAGLMRKVGFDRVFDFAFAADLT 758
Query: 70 LIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQ 129
++E EF+ R S LP +S CPGW+ E++ ++P++SS KSPQ
Sbjct: 759 ILEETTEFLERVG---------SGERLPQFTSCCPGWVNLVERRF-PELIPHLSSCKSPQ 808
Query: 130 QTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEI 189
Q +GAT+K H ++ G D +Y V+V+PC KK EAAR +F + RD
Sbjct: 809 QMMGATVKRHFAERAGIPVDRLYTVSVVPCLAKKYEAARPEFA------PDGVRD----- 857
Query: 190 PEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFR 249
VD+VLTT E+L+++++ ++ +E D+ V G L+ G+SGG AE R
Sbjct: 858 --VDAVLTTTELLEMVEMLRLDPADVEPGAFDEPYAQVSGAGVLF---GASGGVAEAALR 912
Query: 250 HAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVK-MR 308
A + L G+ L+ +R + + A G ++ A+ G N+ + R+++
Sbjct: 913 MAVEKLTGE-PPAELDVHAVRGLEGVKEATVAAGGVEVRVAVVSGLGNVDALARRIRDGE 971
Query: 309 KCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVML----ADPFK--- 361
Y +EVMACP GC+NG G P+ ET+ + V++ P +
Sbjct: 972 DVGYDLIEVMACPGGCVNGAGHPAPRDAH---------ETVARQQVLVDIDRTAPLRRSQ 1022
Query: 362 -NPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
NP V LYDE +P S A + +HT Y P
Sbjct: 1023 ANPDVLRLYDECYGEPNSPLAHELLHTSYAP 1053
>gi|355628603|ref|ZP_09049864.1| hypothetical protein HMPREF1020_03943 [Clostridium sp. 7_3_54FAA]
gi|354819674|gb|EHF04113.1| hypothetical protein HMPREF1020_03943 [Clostridium sp. 7_3_54FAA]
Length = 582
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 134/396 (33%), Positives = 199/396 (50%), Gaps = 39/396 (9%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVF--KKLTTFLKSLGVKSI 59
EK D+ + I + K VI+ +P RA+L E FG P+ K+ + LK LG +
Sbjct: 209 EKDFTDKVFAAIADPAKHVIVQTAPAVRAALGEEFGY-PIGTGLEGKMVSALKMLGFDKV 267
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
FDT S DLT++E +EF+ R + + LP+++S PGWI Y E +
Sbjct: 268 FDTDFSADLTIMEEAHEFLDRVQ---------NGGVLPLITSCSPGWIKYCEHYFPD-MT 317
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
+SS KSPQQ GA K + QK G P +I V++MPC KK E R D Q
Sbjct: 318 KNLSSCKSPQQMFGAIAKSYYAQKAGIDPKDIVSVSIMPCTAKKFEVGR-------DHQA 370
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS 239
+P+VD LTT E+ +I+ + F AL ++ D L ++G +
Sbjct: 371 AN------GVPDVDIALTTRELARMIRKAGIKFTALPDASYDSPLGLSTGAATIFG---A 421
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCYGFQNL 298
+GG E R A +TL G+ ++ L+F +R + +E V G + K A+ G N
Sbjct: 422 TGGVMEAALRTAVETLTGEELKA-LDFAEVRGTAGIKEATYNVAGMDV-KVAVASGLNNA 479
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYLENVMLA 357
+ ++ KVK + Y F+E+M CP GC+NGGGQ + +PG + I+ L L N A
Sbjct: 480 RELLNKVKSGEASYHFIEIMGCPGGCVNGGGQPQ-QPGYVRDTVDIRGLRAQVLYNSDKA 538
Query: 358 DPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + NP ++ LY +L +PGSEKA +HT Y
Sbjct: 539 NTIRKSHENPAIKELYASFLGEPGSEKAHHLLHTSY 574
>gi|257066577|ref|YP_003152833.1| hydrogenase, Fe-only [Anaerococcus prevotii DSM 20548]
gi|256798457|gb|ACV29112.1| hydrogenase, Fe-only [Anaerococcus prevotii DSM 20548]
Length = 577
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 136/394 (34%), Positives = 212/394 (53%), Gaps = 36/394 (9%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSI 59
+ EK ++ E ++ K VI+ ++P R +L E FGI V K+ T L+ LG +
Sbjct: 209 LTEKSNIPEVWRALSSDKHVIVQVAPAVRVALGEMFGIRVGTNVEGKIVTALRRLGFDRV 268
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI- 118
FDT+ + DLT++E NEF+ R K E LP+L+S CPGW+ + E+Q I
Sbjct: 269 FDTNFAADLTIMEEANEFVDRLKGKGE---------LPILTSCCPGWVNFMEQQFSDMID 319
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+P S+ KSP + GA K + +K G P++I V+VMPC KK EA R++ +
Sbjct: 320 IP--STCKSPHEMFGAIAKSYYAEKEGINPEDIVVVSVMPCISKKYEAKRDEL------E 371
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
E Y D VD+V+TT E+ ++I+ ++F +LE+S D + G ++ G
Sbjct: 372 NEGYSD-------VDTVITTRELAEMIKEVGIDFASLEDSDFDNPMGESTGAGDIF---G 421
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
+SGG E R A + K +E +EF +R + +++EG+ +K A+ G N
Sbjct: 422 TSGGVIEATVRTAYNIITEKDLE-KVEFYDLRGLRGIKYATVDIEGRE-IKIAVANGLGN 479
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVM 355
+ ++ K+K ++ +EVMACP GC+ GGGQ P L K E +Y E+
Sbjct: 480 TRRLLEKLKNKEISLDAIEVMACPGGCIGGGGQ--PYHHGDISILKKRSEGLYKLDESKK 537
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L ++NP ++ LYDE+L++PGSEKA +HT Y
Sbjct: 538 LRKSYENPYIKDLYDEYLKEPGSEKAHNLLHTSY 571
>gi|433654713|ref|YP_007298421.1| hydrogenase, Fe-only [Thermoanaerobacterium thermosaccharolyticum
M0795]
gi|433292902|gb|AGB18724.1| hydrogenase, Fe-only [Thermoanaerobacterium thermosaccharolyticum
M0795]
Length = 581
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 196/380 (51%), Gaps = 32/380 (8%)
Query: 14 INKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+++ K V++ +P R +L E FG+ + K+ + LK LG +FDT + DLT+IE
Sbjct: 220 LDEKKYVVVQTAPAVRVALGEEFGMPYGSIVTGKMVSALKRLGFDKVFDTDFAADLTIIE 279
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
NE + R + LPM++S PGWI Y E+ YI +S+ KSP +
Sbjct: 280 EGNELLKRINEG---------GKLPMITSCSPGWINYCERYYPEYI-ENLSTCKSPHMMM 329
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
GA IK + +K G P +I+ V++MPC KK E R + +G++ +V
Sbjct: 330 GAIIKSYFAEKEGIDPKDIFVVSIMPCTAKKYEIDRPQMIV-----------DGMK--DV 376
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D+VLTT E+ +I+ ++F L +S D L G ++G ++GG E R A
Sbjct: 377 DAVLTTRELARMIKQSGIDFVNLPDSEYDNPLGESSGAGVIFG---ATGGVMEAALRTVA 433
Query: 253 KTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
+ GK IE + E+K +R + RE + + GK + K A+ G N + ++ K+K + +
Sbjct: 434 DIVEGKDIE-NFEYKEVRGLEGIREANINIGGKEI-KVAIANGTGNAKKLLDKIKNGEAE 491
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLY 369
Y F+EVM CP GC+ GGGQ P + K L IY +++ + KNP++ LY
Sbjct: 492 YHFIEVMGCPGGCIMGGGQPIHNPNEKDLVRNKRLNAIYEADKDLPIRKSHKNPMITKLY 551
Query: 370 DEWLEQPGSEKAKKHVHTEY 389
E+L P EK+ +HT Y
Sbjct: 552 KEFLISPLGEKSHHLLHTSY 571
>gi|281412258|ref|YP_003346337.1| hydrogenase, Fe-only [Thermotoga naphthophila RKU-10]
gi|281373361|gb|ADA66923.1| hydrogenase, Fe-only [Thermotoga naphthophila RKU-10]
Length = 582
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 136/394 (34%), Positives = 209/394 (53%), Gaps = 34/394 (8%)
Query: 1 MLEKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
++E S+ L + K K +++ +P R ++ E FG +P + +L L+ LG
Sbjct: 206 IVENSSVKVVLEELEKKEKILVVQTAPSVRVAIGEEFGYAPGTISTGQLVAALRRLGFDY 265
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ DLT++E +EF+ R ++ D LPM +S CPGW+ EK +
Sbjct: 266 VFDTNFGADLTIMEEGSEFLERLEKGDLED-------LPMFTSCCPGWVNLVEKAYPE-L 317
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+SS KSPQ + A +K + +KLG +P++I+HV++MPC KK EA R+ +
Sbjct: 318 RTRLSSAKSPQGMLSALVKTYFAEKLGVKPEDIFHVSIMPCTAKKDEALRKQLMVN---- 373
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+P VD VLTT E+ LI++K + F L E D L L+GV
Sbjct: 374 ---------GVPAVDVVLTTRELGKLIRMKKIPFANLPEEEYDAPLGISTGAAVLFGV-- 422
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
+GG E R A + GK + + F+ +R RE ++++GK + K A+ +G N
Sbjct: 423 -TGGVMEAALRTAYELKTGKTLP-KIVFEEVRGLKGVREAEIDLDGKKI-KIAVVHGTAN 479
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVM 355
+N+V K+ R+ Y FVEVMACP GC+ GGGQ + P+ L K E IY E ++
Sbjct: 480 ARNLVEKILRREVKYHFVEVMACPGGCIGGGGQ---PYSRDPEILRKRAEAIYTIDERMV 536
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP ++ LY+E+LE P S KA + +HT Y
Sbjct: 537 LRKSHENPAIKKLYEEYLEHPLSHKAHELLHTYY 570
>gi|19075809|ref|NP_588309.1| iron hydrogenase (predicted) [Schizosaccharomyces pombe 972h-]
gi|74626311|sp|Q9Y7N7.1|NAR1_SCHPO RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1 homolog;
AltName: Full=Nuclear architecture-related protein 1
homolog
gi|4581520|emb|CAB40177.1| iron hydrogenase (predicted) [Schizosaccharomyces pombe]
Length = 538
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 142/467 (30%), Positives = 223/467 (47%), Gaps = 95/467 (20%)
Query: 1 MLEKQSLDEFLSNINKGKA---VIISLSPQSRASLAEHFGISPLQVFKKL-TTFLKSLGV 56
++ QS E L ++ K+ + +SLSPQ RA+LA ++G+S ++ L F+ LG
Sbjct: 78 LVNLQSYQEVLKHLESRKSQEILYVSLSPQVRANLAAYYGLSLQEIQAVLEMVFIGKLGF 137
Query: 57 KSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERS------------------------ 92
+I DT+ SR++ L + EF + QS+ ++
Sbjct: 138 HAILDTNASREIVLQQCAQEFCNSWLQSRAHKNQNQVTNSVVNEHPLIPHSTSQISGVHS 197
Query: 93 ----------NSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQ 142
N+ LP+LSS+CPGWICY EK S ++P +S V+SPQQ G +K Q
Sbjct: 198 NTSSNSGINENAVLPILSSSCPGWICYVEKT-HSNLIPNLSRVRSPQQACGRILKDWAVQ 256
Query: 143 KLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVL 202
+ + ++++H+++MPC+DKKLEA+R++F E RD VDSVLT E++
Sbjct: 257 QFSMQRNDVWHLSLMPCFDKKLEASRDEF------SENGVRD-------VDSVLTPKELV 303
Query: 203 DLIQLKAVNFEALEESPLDKMLTNVDDEGHLY-------GVAGSSGGYAETVFRHAAKTL 255
++ + ++ L ++P+ + D Y + SSGGY V +AAK L
Sbjct: 304 EMFKFLRIDPIELTKNPI-PFQQSTDAIPFWYPRITYEEQIGSSSGGYMGYVLSYAAKML 362
Query: 256 FGKVIEGHLEFKTIRNSDFREVALE--VEGKTLLKFALCYGFQNLQNIVRKV----KMRK 309
FG G +N D E L + L+ A CYGF+N+QN+VR+V +RK
Sbjct: 363 FGIDDVGPYVSMNNKNGDLTEYTLRHPETNEQLISMATCYGFRNIQNLVRRVHGNSSVRK 422
Query: 310 --------------------CDYQFVEVMACPSGCLNGGGQIKPKPG----QSPKELIKT 345
Y +VEVMACP GC+NGGGQ+ P P S ++ ++
Sbjct: 423 GRVLLKKRVRSNAQNPTEEPSRYDYVEVMACPGGCINGGGQL-PFPSVERIVSARDWMQQ 481
Query: 346 LETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPV 392
+E +Y E + V + ++W++ P K +HT Y V
Sbjct: 482 VEKLYYEPGTRS--VDQSAVSYMLEQWVKDP--TLTPKFLHTSYRAV 524
>gi|220929867|ref|YP_002506776.1| hydrogenase, Fe-only [Clostridium cellulolyticum H10]
gi|220000195|gb|ACL76796.1| hydrogenase, Fe-only [Clostridium cellulolyticum H10]
Length = 574
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 128/378 (33%), Positives = 195/378 (51%), Gaps = 39/378 (10%)
Query: 20 VIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
V++ +P R +L E FG +P V K+ L+ LG +FDT+ S DLT+IE NE I
Sbjct: 225 VVVQTAPAVRVALGEEFGFAPGTNVEGKMVAALRRLGFDKVFDTNFSADLTIIEEGNELI 284
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R + + LP+++S PGWI Y E +I +SS KSPQQ GA K
Sbjct: 285 NRIQ---------NGGKLPLITSCSPGWIKYCEHNYHDFI-ENLSSCKSPQQMFGAIAKS 334
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ K P +++ V+VMPC KK EA RE+ +GL+ ++D+V+TT
Sbjct: 335 YYPTKADVDPRKVFVVSVMPCTAKKYEADREEMSV-----------DGLK--DIDAVITT 381
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ +I+ + FE LE+S D +L G ++G ++GG E R A L GK
Sbjct: 382 RELAKMIRQAGIKFEELEDSKQDSILGTYSGAGTIFG---NTGGVMEAALRTVADKLTGK 438
Query: 259 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
++ +E+ +R D +E + V G + K A+ G N ++ K++ + +Y F+EV
Sbjct: 439 SLD-CIEYTAVRGLDGIKEATVNVAGMEI-KVAVANGTGNASKLLDKIRAGEANYHFIEV 496
Query: 318 MACPSGCLNGGGQ--IKPKPGQSPKELIKTLETIYLENVMLA----DPFKNPLVRSLYDE 371
M C GC+NGGGQ IK K S + +K L N+ ++ +NP ++ LY E
Sbjct: 497 MGCEGGCINGGGQPIIKDK---STTDDVKAARIKGLYNIDVSCEKRKSHENPKIQKLYAE 553
Query: 372 WLEQPGSEKAKKHVHTEY 389
+L + G KA K +HT Y
Sbjct: 554 YLGEAGGHKAHKLLHTHY 571
>gi|323141631|ref|ZP_08076513.1| putative ferredoxin hydrogenase HydA1 [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413896|gb|EFY04733.1| putative ferredoxin hydrogenase HydA1 [Phascolarctobacterium
succinatutens YIT 12067]
Length = 575
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 208/396 (52%), Gaps = 38/396 (9%)
Query: 1 MLEKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
++EK D+ + IN K V++ +P R +L E GI QV K+ L+ LG
Sbjct: 208 IVEKDDTDKVWAAINNPEKVVVVQTAPSVRVALGEELGIPAGQVVTGKMVAALRHLGFDK 267
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT++E +EF+ R + + LPM++S PGW+ E + +
Sbjct: 268 VFDTNFSADLTIMEEGHEFLQRLQ---------NGGVLPMITSCSPGWVNMIELKY-PEL 317
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
LP++S+ KSPQQ GA K + ++ G P +I V+VMPC KK EAARE+
Sbjct: 318 LPHLSTAKSPQQMFGAVAKTYFAERAGIDPAKIVSVSVMPCTAKKAEAAREEMC------ 371
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
YRD VD V+TT E+ +I+ ++F ALEE+ D L ++ G
Sbjct: 372 ASGYRD-------VDVVITTRELGRMIREAGIDFNALEEAEFDSPLGTGTGAAVIF---G 421
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
++GG E R A+ + GK + LE+ +R + RE ++V G + +K A+ + ++
Sbjct: 422 TTGGVMEAALRTVAEVVAGKELP-KLEYNEVRGMEQTREAVIDVAGVS-VKVAVVHTLKS 479
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG---QSPKELIKTLETIYLENV 354
+ ++ ++K DYQF+EVMACP GC+ GGGQ P Q +E I +
Sbjct: 480 AKMMLERIKAGTADYQFIEVMACPGGCIGGGGQPVPVDASIRQKRREAIFNCD----RTS 535
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
L +NP +++LYD WL +P SE+A +HT YH
Sbjct: 536 ELRKSHENPEIKTLYDTWLGKPLSERAHSLLHTHYH 571
>gi|291544587|emb|CBL17696.1| hydrogenases, Fe-only [Ruminococcus champanellensis 18P13]
Length = 582
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 136/401 (33%), Positives = 198/401 (49%), Gaps = 45/401 (11%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK S E L+ I + K VI+ +P RA L E FG P+ V K+ L+ LG
Sbjct: 209 LAEKDSTSEVLAAIADPSKHVIVQTAPAVRAGLGECFGY-PIGTDVEGKMVAALRRLGFD 267
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT + DLT++E EFI R + + LP+++S PGWI + E
Sbjct: 268 KVFDTDFAADLTIMEEGTEFIDRLQ---------NGGKLPLITSCSPGWIKFCEHYYPD- 317
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+ +SS KSPQQ GA K + +K+G P ++ V+VMPC KK E R+D
Sbjct: 318 MTENLSSCKSPQQMFGAVAKSYYAEKMGIDPKDMVVVSVMPCTAKKFEIGRDDQAAN--- 374
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
+P+VD LTT E+ +IQ +NF+AL + D L G ++G
Sbjct: 375 ----------GVPDVDIALTTRELGRMIQRAGINFQALLDEEFDMPLGLSTGAGVIFG-- 422
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQ 296
++GG E R + L K + L+F+ +R + +E V G T +K A+ G
Sbjct: 423 -ATGGVMEAALRTVVEVLEKKELP-SLDFQEVRGMEGIKEATYNVAG-TDVKLAVASGLA 479
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKE------LIKTLETIY 350
N + ++ KV + DY F+E+M CP GC+NGGGQ P SP E K +Y
Sbjct: 480 NARMLLDKVNSGEADYHFIEIMGCPGGCINGGGQ----PHVSPAERNFGDYRAKRASVLY 535
Query: 351 LENVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ A +N V+ LYD +LE+PGS KA + +HT Y
Sbjct: 536 SNDAAKAVRKSHENAGVKELYDTYLEKPGSHKAHQLLHTTY 576
>gi|357056152|ref|ZP_09117207.1| hypothetical protein HMPREF9467_04179 [Clostridium clostridioforme
2_1_49FAA]
gi|355381400|gb|EHG28526.1| hypothetical protein HMPREF9467_04179 [Clostridium clostridioforme
2_1_49FAA]
Length = 581
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 132/395 (33%), Positives = 199/395 (50%), Gaps = 44/395 (11%)
Query: 6 SLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTS 63
+ D F + + K VI+ +P RA L E FG+ P+ V K+ L+ LG +FDT+
Sbjct: 212 TADVFAAIADPKKHVIVQTAPAVRAGLGEEFGL-PIGTDVEGKMAAALRRLGFDKVFDTN 270
Query: 64 CSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYIS 123
S DLT++E +EFI R + + LP+++S PGW+ Y E + +S
Sbjct: 271 FSADLTIMEEAHEFIDRVQ---------NGGVLPLITSCSPGWVKYCEHYFPD-MTENLS 320
Query: 124 SVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYR 183
S KSPQQ GA K + +K G P +I V+VMPC KK E RED
Sbjct: 321 SCKSPQQMFGAIAKSYYAEKAGIDPKDIVSVSVMPCTAKKFEIGRED------------- 367
Query: 184 DEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA---GSS 240
++ +P+VD +TT E+ +I+ + F L + D L G G A G++
Sbjct: 368 EDANGMPDVDISITTRELARMIKKAGIRFLDLPDEEFDAPL------GLGTGAAVIFGAT 421
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCYGFQNLQ 299
GG E R A +TL G+ + +F +R + +E V G + K A+ G N +
Sbjct: 422 GGVMEAALRTAVETLTGEELP-KPDFTEVRGTKGIKEATYNVAGMEV-KIAVASGLGNAR 479
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYLENVMLAD 358
++ KVK + +Y F+E+M CP GC+NGGGQ + +PG I+ L L ++ A+
Sbjct: 480 ELLNKVKSGEANYHFIEIMGCPGGCVNGGGQPQ-QPGHVRNTTDIRGLRAKVLYDIDTAN 538
Query: 359 PFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
P + NP ++ LY +L +PGSEKA +HT Y
Sbjct: 539 PIRKSHENPAIKELYATYLGEPGSEKAHHLLHTTY 573
>gi|424834421|ref|ZP_18259132.1| [Fe] hydrogenase [Clostridium sporogenes PA 3679]
gi|365978767|gb|EHN14836.1| [Fe] hydrogenase [Clostridium sporogenes PA 3679]
Length = 577
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 125/379 (32%), Positives = 196/379 (51%), Gaps = 34/379 (8%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K VI+ +P RA+L E FG+ P V K+ L+ LG +FDT + DLT++E
Sbjct: 227 KDKVVIVQTAPAIRAALGEEFGLEPGTAVTGKMVAALRQLGFSKVFDTDFAADLTIMEEA 286
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
+EFI R + +LPML+S CPGWI + E ++ SS KSPQQ GA
Sbjct: 287 SEFIHRLEHG---------GTLPMLTSCCPGWIKFFEHNFND-LMNIPSSCKSPQQMFGA 336
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
K ++ +K+ P +I V+VMPC KK EA RE+ + G IP+VD
Sbjct: 337 IAKSYLAEKMKVDPKDIIVVSVMPCLAKKYEAKREEM-----------KRNG--IPDVDI 383
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V++T E+ +I ++F +L++ D L ++ G++GG E R A +
Sbjct: 384 VISTRELAKMIVEAGIDFNSLQKEEFDNPLGESTGASVIF---GTTGGVMEAALRTAYEW 440
Query: 255 LFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
+ ++ +EF +R + RE + ++ +K A+ G N + ++ ++ K Y
Sbjct: 441 VTEDTLK-DVEFTEVRGEEGIREATVNIK-DIEVKVAIASGLGNARKLLNDIRNGKSKYH 498
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDE 371
+E+MACPSGC++GGGQ P L K E +Y E N + +NP ++ LY+E
Sbjct: 499 MIEIMACPSGCVDGGGQ--PYIYGDTNILKKRTEALYKEDSNKKIRKSHENPYIKKLYEE 556
Query: 372 WLEQPGSEKAKKHVHTEYH 390
+L +P EKA + +HT+Y
Sbjct: 557 YLGKPYGEKAHELLHTKYR 575
>gi|146296869|ref|YP_001180640.1| hydrogenase, Fe-only [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|145410445|gb|ABP67449.1| hydrogenase, Fe-only [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 579
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 130/397 (32%), Positives = 205/397 (51%), Gaps = 37/397 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK S D + +K K V++ +P R +L E FG+ P+ +V K+ T LK LG
Sbjct: 206 LREKDSTDIVWKALADKNKYVVVQTAPAVRVALGEEFGL-PIGTRVTGKMVTALKMLGFD 264
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT DLT++E E I R K + LP+++S PGWI + E +
Sbjct: 265 KVFDTDTGADLTIMEEGTELINRIK---------NGGKLPLITSCSPGWIKFCEHYFPEF 315
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
L +S+ KSP + GA +K + QK+G P ++ V++MPC KK EA RE+
Sbjct: 316 -LDNLSTCKSPHEMFGAILKTYYAQKMGIDPANMFVVSIMPCTAKKFEAQREELAAS--- 371
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
P+VD+VLTT E+ +I+ ++F L ++ D + + G ++G
Sbjct: 372 ----------GYPDVDAVLTTRELARMIKEAGIDFVNLPDNHFDDPMGDATGAGVIFG-- 419
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQ 296
++GG E R + L GK +E ++E +R + RE ++V G +K A+ +G
Sbjct: 420 -TTGGVMEAALRTVYEILTGKPLE-NVEITQVRGLEGIREAEIDV-GTMKIKAAVAHGLA 476
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPKELIK-TLETIYLENV 354
N + ++ VK + +Y F+E+MACP GC+ GGGQ I P + ++ K IY E+
Sbjct: 477 NAKKLLEMVKNGEKEYHFIEIMACPGGCIMGGGQPIVPAKVREKIDVAKLRASAIYDEDR 536
Query: 355 MLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP ++ LY+E+L P SEKA +HT Y
Sbjct: 537 SLPIRKSHENPTIKKLYEEFLGHPNSEKAHHILHTHY 573
>gi|15642974|ref|NP_228016.1| NADP-reducing hydrogenase, subunit D [Thermotoga maritima MSB8]
gi|4980698|gb|AAD35293.1|AE001705_4 NADP-reducing hydrogenase, subunit D, putative [Thermotoga maritima
MSB8]
Length = 608
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 131/378 (34%), Positives = 203/378 (53%), Gaps = 33/378 (8%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K +++ +P R ++ E FG +P + ++ L+ LG +FDT+ DLT++E
Sbjct: 248 KEKILVVQTAPSVRVAIGEEFGYAPGTISTGQMVAALRRLGFDYVFDTNFGADLTIMEEG 307
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
+EF+ R ++ D LPM +S CPGW+ EK + + +SS KSPQ + A
Sbjct: 308 SEFLERLEKGDLED-------LPMFTSCCPGWVNLVEK-VYPELRTRLSSAKSPQGMLSA 359
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
+K + +KLG +P++I+HV++MPC KK EA R+ + +P VD
Sbjct: 360 MVKTYFAEKLGVKPEDIFHVSIMPCTAKKDEALRKQLMVN-------------GVPAVDV 406
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
VLTT E+ LI++K + F L E D L L+GV +GG E R A +
Sbjct: 407 VLTTRELGKLIRMKKIPFANLPEEEYDAPLGISTGAAALFGV---TGGVMEAALRTAYEL 463
Query: 255 LFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
GK + + F+ +R RE ++++GK + + A+ +G N++N+V K+ R+ Y
Sbjct: 464 KTGKALP-KIVFEEVRGLKGVREAEIDLDGKKI-RIAVVHGTANVRNLVEKILRREVKYH 521
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDE 371
FVEVMACP GC+ GGGQ + P+ L K E IY E + L +NP ++ LY+E
Sbjct: 522 FVEVMACPGGCIGGGGQ---PYSRDPEILRKRAEAIYTIDERMTLRKSHENPAIKKLYEE 578
Query: 372 WLEQPGSEKAKKHVHTEY 389
+LE P S KA + +HT Y
Sbjct: 579 YLEHPLSHKAHELLHTYY 596
>gi|167752244|ref|ZP_02424371.1| hypothetical protein ALIPUT_00486 [Alistipes putredinis DSM 17216]
gi|167660485|gb|EDS04615.1| hydrogenase, Fe-only [Alistipes putredinis DSM 17216]
Length = 589
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 126/404 (31%), Positives = 209/404 (51%), Gaps = 41/404 (10%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFD 61
E ++ E + + + GK V++ +P R +L + FG+ V K+TT L+ LG +FD
Sbjct: 212 ENSNIREVMQALADPGKTVVVQTAPAVRVALGQDFGLEGRSVTGKMTTALRRLGFDYVFD 271
Query: 62 TSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEK---QLGSYI 118
T + DLT++E E + R + D +P+++S CPGW+ + EK +LG
Sbjct: 272 TDFAADLTIMEEGTELLQRLNKYLAGD---RTVKIPLMTSCCPGWVSFMEKHFPELGE-- 326
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+S+ KSPQQ GA K+++ KLG V+VMPC KK EAAR +F D
Sbjct: 327 --NLSTAKSPQQMFGAIAKNYLAPKLGIDRRNFIVVSVMPCVAKKSEAARPEFGKDGD-- 382
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
P+V+ +TT E+ +I+ +NF+ LEES D+ L G ++ G
Sbjct: 383 -----------PDVNISITTRELAHMIRFANMNFDELEESDFDRPLGESTGAGVIF---G 428
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R A + K + L+F +R + R ++ +G +K + +G N
Sbjct: 429 TTGGVIEAAVRTAYEIQTKKTLP-KLDFTELRGLAGIRSATIDFDG-VPVKIGIAHGLGN 486
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLA 357
+ +V +++ + Y +E+MACP GC+NGGGQ P + + L + E +Y E+ A
Sbjct: 487 ARRLVEEIRAGRSPYHAIEIMACPGGCINGGGQ--PYHRGNEELLKRRAEALYAEDA--A 542
Query: 358 DPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEYH---PVVK 394
P + NP +++LY+E+L +P + + +HT Y+ PVV+
Sbjct: 543 KPLRKSHENPDIQALYEEFLGEPCGPLSHELLHTRYYDRKPVVE 586
>gi|304316579|ref|YP_003851724.1| hydrogenase, Fe-only [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302778081|gb|ADL68640.1| hydrogenase, Fe-only [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
Length = 581
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 124/380 (32%), Positives = 197/380 (51%), Gaps = 32/380 (8%)
Query: 14 INKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+++ K V++ +P R +L E FG+ + K+ + LK LG +FDT + DLT+IE
Sbjct: 220 LDEKKYVVVQTAPAVRVALGEEFGMPYGSIVTGKMVSALKRLGFDKVFDTDFAADLTIIE 279
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
NE + R + LPM++S PGWI Y E+ +I +S+ KSP +
Sbjct: 280 EGNELLKRINEG---------GKLPMITSCSPGWINYCERYYPEFI-DNLSTCKSPHMMM 329
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
GA IK + +K G P +I+ V++MPC KK E R + +G++ +V
Sbjct: 330 GAIIKSYFAEKEGIDPKDIFVVSIMPCTAKKYEIDRPQMM-----------TDGMK--DV 376
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D+VLTT E+ +I+ ++F L +S D L G ++G ++GG E R A
Sbjct: 377 DAVLTTRELARMIKQSGIDFVNLPDSEYDNPLGESSGAGVIFG---ATGGVMEAALRTVA 433
Query: 253 KTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
+ GK IE + E+K +R + RE + + GK + K A+ G N + ++ K+K + +
Sbjct: 434 DIVEGKDIE-NFEYKEVRGLEGIREANINIGGKEI-KVAIANGTGNAKKLLDKIKNGEAE 491
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLY 369
Y F+EVM CP GC+ GGGQ P + K L IY +++ + KNP++ LY
Sbjct: 492 YHFIEVMGCPGGCIMGGGQPIHNPNEKDLVRNKRLNAIYEADKDLPIRKSHKNPMITKLY 551
Query: 370 DEWLEQPGSEKAKKHVHTEY 389
+E+L P EK+ +HT Y
Sbjct: 552 EEFLISPLGEKSHHLLHTSY 571
>gi|323703143|ref|ZP_08114797.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
gi|333923220|ref|YP_004496800.1| hydrogenase, Fe-only [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|323531920|gb|EGB21805.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
gi|333748781|gb|AEF93888.1| hydrogenase, Fe-only [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 593
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 126/372 (33%), Positives = 191/372 (51%), Gaps = 31/372 (8%)
Query: 20 VIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
V++ ++P + +L E F + + V KL T L+ LGV +F+T S DLT++E EF+
Sbjct: 226 VLVQIAPAVKVALGEEFKLPAGTDVSGKLVTALRLLGVDKVFNTDFSADLTIMEEGTEFL 285
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R S + LPM++S CP W+ +AE+ +LP++SS KSPQQ GA K
Sbjct: 286 GRLNNSGQ---------LPMITSCCPSWVKFAEQNY-PQLLPHLSSCKSPQQMFGAIAKT 335
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
QK P +I V+VMPC KK EA+R E RD I EVD VLTT
Sbjct: 336 FYAQKENLNPGKICVVSVMPCVTKKFEASR----------PEMARD---GIREVDIVLTT 382
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ LI+L +NF L + D L G ++GV +GG E R ++ + G
Sbjct: 383 RELAKLIRLNKINFNQLADGDFDYDLGFATGAGTIFGV---TGGVMEAAVRTISEVITGT 439
Query: 259 VIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
E +EF +R + +E + + G+T L+ A+ G +N I+ ++K Y F+EV
Sbjct: 440 QRE-KIEFMPVRGLAGVKEAEITLNGQT-LRLAVVSGARNAARIMEQIKDGSSPYHFIEV 497
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPG 377
M CP GC+ GGGQ P + + L I E + +NP ++++Y+++L +P
Sbjct: 498 MGCPGGCIAGGGQPLPVMSTEIQNRARGLYAID-EGKAVRKSHENPAIKAVYEQFLTEPN 556
Query: 378 SEKAKKHVHTEY 389
A + +HT Y
Sbjct: 557 GHLAHELLHTHY 568
>gi|443923185|gb|ELU42459.1| nuclear prelamin A recognition factor-like protein [Rhizoctonia
solani AG-1 IA]
Length = 549
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 138/407 (33%), Positives = 200/407 (49%), Gaps = 80/407 (19%)
Query: 18 KAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEAC 74
K+ ++S++PQ ASLA S Q+ +++ F S LG ++DT+ +R + L+E
Sbjct: 89 KSFVLSIAPQCLASLAASISPSATTQQILRRVEVFASSILGFSHVYDTTFARHIALLEHT 148
Query: 75 NEFIARYKQSQES---DDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQT 131
EF R S S D++ ++ LPM++SACPGW+CY EK I P++S KSPQQ
Sbjct: 149 REFFERRDSSTSSNLSDNKPGDTRLPMIASACPGWVCYVEKAHPEMI-PFLSRTKSPQQV 207
Query: 132 I--GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEI 189
+ A I+ + FR + IYHVTVMPCYDKKLEA+R+DF Y D L
Sbjct: 208 MVSCAFIRTADLIQGAFRANSIYHVTVMPCYDKKLEASRQDF----------YNDI-LST 256
Query: 190 PEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFR 249
+VD VLTT E+ L++ K + A + + NV++ G L +A G + + +
Sbjct: 257 RDVDCVLTTTELEILMRDKGWDISAPVPGEDETRMPNVEN-GILPELAQHPGSSSGSYLQ 315
Query: 250 HAAKTLFGKVIEGHLEFKTIRNSDFRE--VALEVEGKTLLKFALCYGFQNLQNIVRKV-- 305
++ + K IR +D+ E V EV+G+ L + A CYGF+NLQNIVRKV
Sbjct: 316 SLIDSVSLSAKSPSVSTKAIRTTDYEEYTVTDEVDGRVLFRGAKCYGFRNLQNIVRKVGR 375
Query: 306 ----------------KMRKC---------------DYQFVEVMACPSGCLNGGGQIKPK 334
+ R+ Y +VEVMACP+GC+NGGGQ+ +
Sbjct: 376 DTGVSVGRGAAGRVATRGRRVVGATARKGSQAEEPRSYDYVEVMACPAGCVNGGGQL--R 433
Query: 335 PGQSP----------------------KELIKTLETIYLENVMLADP 359
G P K+L+K +E IY V P
Sbjct: 434 GGARPQTTDGFDGVSESAAARDARWGDKQLVKDVEAIYWGGVWTPPP 480
>gi|388581203|gb|EIM21513.1| iron hydrogenase, partial [Wallemia sebi CBS 633.66]
Length = 519
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 153/470 (32%), Positives = 227/470 (48%), Gaps = 102/470 (21%)
Query: 1 MLEKQS---LDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQ--VFKKLTTFLKSLG 55
++E QS + ++LS N K +I S+SPQS AS++ P + ++L LKS+G
Sbjct: 85 LIESQSHLEVKKYLSKDNDKKTMIASISPQSLASISASLSSRPSNEVLLRRLRHHLKSIG 144
Query: 56 VKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLG 115
+FDT+ SR L+L+E NEF + SN+ L +L+SACPGWICY EK G
Sbjct: 145 FDYVFDTTFSRHLSLLEILNEF----------NSLDSNNRL-LLTSACPGWICYVEKTHG 193
Query: 116 SYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL 175
++P+IS+ KSPQQ +G+ +K+ Q++ +IYHVT+MPCYDKKLEA+R+DF L
Sbjct: 194 E-LIPFISTTKSPQQVMGSLVKYWFSQRINKSASDIYHVTIMPCYDKKLEASRQDFYSDL 252
Query: 176 DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDE---GH 232
+ +VD VLT+GE+ L K +N L ES ++ + + +++ H
Sbjct: 253 -----------YQTRDVDCVLTSGELGSLFD-KPIN---LNESLPNENIVSTEEKLIPHH 297
Query: 233 LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVE-GKTLLKFA 290
+ SSG Y E + +T +E H + RN +D E L E + + K +
Sbjct: 298 IQHPGTSSGSYLENIMTLIKQTTPNLRLETH----SPRNLADSVEYLLINENNECVFKGS 353
Query: 291 LCYGFQNLQNIVRKVKMRKC-----------------------------DYQFVEVMACP 321
CYGF+N+QN+VRKV K FVEVMACP
Sbjct: 354 KCYGFKNIQNLVRKVGKEKGLNSGRGAAGRMAGRGRVRTRNTGNPHDSKSLDFVEVMACP 413
Query: 322 SGCLNGGGQIKP-----KPGQ-----------------------SPKELIKTLETIYLEN 353
SGC+NGGGQ+KP K G + K I +E IY
Sbjct: 414 SGCINGGGQLKPGINTDKEGHERDWESEGVATDPTKNIEESVRWTTKNWINRVEDIYWTG 473
Query: 354 VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
+ ++ + E L+ E +K+H+ T+YH + + W
Sbjct: 474 SEASKAVTLEMLSKISTEMLK----ELSKEHLRTQYHAIESDTSGLAVQW 519
>gi|418046137|ref|ZP_12684231.1| hydrogenase, Fe-only [Thermotoga maritima MSB8]
gi|351675690|gb|EHA58850.1| hydrogenase, Fe-only [Thermotoga maritima MSB8]
Length = 582
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 131/379 (34%), Positives = 203/379 (53%), Gaps = 33/379 (8%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
K K +++ +P R ++ E FG +P + ++ L+ LG +FDT+ DLT++E
Sbjct: 221 KKEKILVVQTAPSVRVAIGEEFGYAPGTISTGQMVAALRRLGFDYVFDTNFGADLTIMEE 280
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EF+ R ++ D LPM +S CPGW+ EK + + +SS KSPQ +
Sbjct: 281 GSEFLERLEKGDLED-------LPMFTSCCPGWVNLVEK-VYPELRTRLSSAKSPQGMLS 332
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A +K + +KLG +P++I+HV++MPC KK EA R+ + +P VD
Sbjct: 333 AMVKTYFAEKLGVKPEDIFHVSIMPCTAKKDEALRKQLMVN-------------GVPAVD 379
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
VLTT E+ LI++K + F L E D L L+GV +GG E R A +
Sbjct: 380 VVLTTRELGKLIRMKKIPFANLPEEEYDAPLGISTGAAALFGV---TGGVMEAALRTAYE 436
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
GK + + F+ +R RE ++++GK + + A+ +G N++N+V K+ R+ Y
Sbjct: 437 LKTGKALP-KIVFEEVRGLKGVREAEIDLDGKKI-RIAVVHGTANVRNLVEKILRREVKY 494
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYD 370
FVEVMACP GC+ GGGQ + P+ L K E IY E + L +NP ++ LY+
Sbjct: 495 HFVEVMACPGGCIGGGGQ---PYSRDPEILRKRAEAIYTIDERMTLRKSHENPAIKKLYE 551
Query: 371 EWLEQPGSEKAKKHVHTEY 389
E+LE P S KA + +HT Y
Sbjct: 552 EYLEHPLSHKAHELLHTYY 570
>gi|409386319|ref|ZP_11238741.1| Periplasmic [Fe] hydrogenase large subunit [Lactococcus
raffinolactis 4877]
gi|399206417|emb|CCK19656.1| Periplasmic [Fe] hydrogenase large subunit [Lactococcus
raffinolactis 4877]
Length = 456
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 120/379 (31%), Positives = 196/379 (51%), Gaps = 34/379 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ +P R +L E F + V K+ L +G +FDT+ + D T++E E
Sbjct: 99 KHVVVQTAPSVRVTLGEAFQLPVGTNVEGKMVAALCRIGFDRVFDTNVAADFTIMEEATE 158
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ R + +N PM +S PGW+ Y E ++P +SS KSPQQ GA I
Sbjct: 159 FLQRVE---------NNGPFPMFTSCSPGWVKYCEA-YHPELIPNLSSCKSPQQMFGALI 208
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K QK P +I+ V +MPC KK E RE+ +VD L
Sbjct: 209 KTWYAQKNNIEPKDIFVVGIMPCTAKKFEVTREN-------------QAAAGFTDVDIAL 255
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I + F L + D+ L + G+++ G++GG E R A++TL
Sbjct: 256 TTRELARMIDKVGIRFNELPDETFDQPLGDATGAGYIF---GATGGVMEAALRTASETLA 312
Query: 257 GKVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G +E ++F+ +R + +E E+ G+T +K A+ G N + ++ +++ + Y FV
Sbjct: 313 GHALEA-VDFEEVRGTKGIKEATYEMSGQT-VKVAVASGINNAKRLIEQIEKGEAFYHFV 370
Query: 316 EVMACPSGCLNGGGQ-IKPKPGQSPKEL-IKTLETIYLENV--MLADPFKNPLVRSLYDE 371
E+MACP GC+NGGGQ ++P ++ +L K + +Y+E+ L +NP+++ +Y E
Sbjct: 371 EIMACPGGCVNGGGQPVQPGSVRNFVDLQSKRAQALYVEDRGKGLRRSHENPVLQRIYQE 430
Query: 372 WLEQPGSEKAKKHVHTEYH 390
+LE+PGS KA +HT +
Sbjct: 431 FLEKPGSHKAHHILHTSFQ 449
>gi|213405865|ref|XP_002173704.1| iron hydrogenase [Schizosaccharomyces japonicus yFS275]
gi|259511272|sp|B6K2N0.1|NAR1_SCHJY RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1 homolog;
AltName: Full=Nuclear architecture-related protein 1
homolog
gi|212001751|gb|EEB07411.1| iron hydrogenase [Schizosaccharomyces japonicus yFS275]
Length = 515
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 145/445 (32%), Positives = 223/445 (50%), Gaps = 75/445 (16%)
Query: 1 MLEKQSLDEFLSNINKGKA---VIISLSPQSRASLAEHFGISPLQVFKKL-TTFLKSLGV 56
++ QS E L +N +A I+ +SPQ+RASLA ++ +S +V + + F L
Sbjct: 79 LINLQSYHEVLKFVNAKEADDFFILQMSPQARASLAAYYNLSVQEVQLWIQSVFTNELKF 138
Query: 57 KSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSS-------LPMLSSACPGWICY 109
+ DT SR+++L +A EF + + + ++ S LP+LSS+CPGWICY
Sbjct: 139 NVVVDTGFSREISLRQAAIEFCQSWVAANAAKTVYNSKSGEVAPKPLPVLSSSCPGWICY 198
Query: 110 AEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE 169
EK S ++P+IS+V+SPQQ G +K +LG +I+ +++MPC+DKKLEA+R
Sbjct: 199 VEKTHSS-LIPHISTVRSPQQVAGRLLKDWFSYQLGISRKKIWVLSLMPCFDKKLEASRN 257
Query: 170 DFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL--------EESP-L 220
DFV E RD VD V+T E+++L++ K ++ +++ E++P L
Sbjct: 258 DFV------NEQVRD-------VDCVITPKELVELLKTKNISPQSMDLDSLSISEQTPCL 304
Query: 221 DKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALE 280
V E SSGGY + AAK LF + + +N+D E L
Sbjct: 305 PSWYEPVQFEQQ---NGSSSGGYLHYIMTFAAKALFDINDLTNRINVSQKNADMIEYELT 361
Query: 281 V--EGKTLLKFALCYGFQNLQNIVRKV--------------KMR-----------KCDYQ 313
G+TLL+ A CYGF+N+QN+VR V +M+ K
Sbjct: 362 SPDTGETLLRMATCYGFRNIQNLVRNVGRKSAPRRGRVLLKRMKNMSTSPSTGTGKQKLD 421
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQS-----PKELIKTLETIYLE-NVMLADPFKNPLVRS 367
+VEVMACP GC+NGGGQ+ P + +E ++ +E Y + V D N V +
Sbjct: 422 YVEVMACPGGCINGGGQLPPPESSADFSGISREWMRQVEAHYFQPGVRQVD---NAAVDA 478
Query: 368 LYDEWLEQPGSEKAKKHVHTEYHPV 392
+ WL P + +HT+YH V
Sbjct: 479 AVEHWL--PSYSLQQSILHTKYHAV 501
>gi|403252994|ref|ZP_10919299.1| NADP-reducing hydrogenase, subunit D [Thermotoga sp. EMP]
gi|402811756|gb|EJX26240.1| NADP-reducing hydrogenase, subunit D [Thermotoga sp. EMP]
Length = 582
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 131/379 (34%), Positives = 203/379 (53%), Gaps = 33/379 (8%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
K K +++ +P R ++ E FG +P + ++ L+ LG +FDT+ DLT++E
Sbjct: 221 KKEKILVVQTAPSVRVAIGEEFGYAPGTISTGQMVAALRRLGFDYVFDTNFGADLTIMEE 280
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EF+ R ++ D LPM +S CPGW+ EK + + +SS KSPQ +
Sbjct: 281 GSEFLERLEKGDLED-------LPMFTSCCPGWVNLVEK-VYPELRTRLSSAKSPQGMLS 332
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A +K + +KLG +P++I+HV++MPC KK EA R+ + +P VD
Sbjct: 333 AMVKTYFAEKLGVKPEDIFHVSIMPCTAKKDEALRKQLMVN-------------GVPAVD 379
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
VLTT E+ LI++K + F L E D L L+GV +GG E R A +
Sbjct: 380 VVLTTRELGKLIRMKKIPFANLPEEEYDAPLGISTGAAALFGV---TGGVMEAALRTAYE 436
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
GK + + F+ +R RE ++++GK + + A+ +G N++N+V K+ R+ Y
Sbjct: 437 LKTGKTLP-KIVFEEVRGLKGVREAEIDLDGKKI-RIAVVHGTANVRNLVEKILRREVKY 494
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYD 370
FVEVMACP GC+ GGGQ + P+ L K E IY E + L +NP ++ LY+
Sbjct: 495 HFVEVMACPGGCIGGGGQ---PYSRDPEILRKRAEAIYTIDERMTLRKSHENPAIKKLYE 551
Query: 371 EWLEQPGSEKAKKHVHTEY 389
E+LE P S KA + +HT Y
Sbjct: 552 EYLEHPLSHKAHELLHTYY 570
>gi|256004229|ref|ZP_05429212.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 2360]
gi|385777924|ref|YP_005687089.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 1313]
gi|419721959|ref|ZP_14249111.1| hydrogenase, Fe-only [Clostridium thermocellum AD2]
gi|419727017|ref|ZP_14254027.1| hydrogenase, Fe-only [Clostridium thermocellum YS]
gi|255991819|gb|EEU01918.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 2360]
gi|316939604|gb|ADU73638.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 1313]
gi|380769603|gb|EIC03513.1| hydrogenase, Fe-only [Clostridium thermocellum YS]
gi|380781998|gb|EIC11644.1| hydrogenase, Fe-only [Clostridium thermocellum AD2]
Length = 1149
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 124/383 (32%), Positives = 203/383 (53%), Gaps = 44/383 (11%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K V+ ++P R+ ++ FG+S + + LK LG +FD + + DLT++E EF
Sbjct: 705 KTVVGFVAPAVRSLISNTFGVSYEEASPFMAGLLKKLGFDKVFDFTFAADLTIVEETTEF 764
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
++R + + +P +S CPGWI + EK+ I+P++S+ KSPQ +GAT+K
Sbjct: 765 LSRIQ---------NKGVMPQFTSCCPGWINFVEKRYPE-IIPHLSTCKSPQMMMGATVK 814
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+H + +G ++++ V+++PC KK EAAR +F+ I +VD+VLT
Sbjct: 815 NHYAKLMGINKEDLFVVSIVPCLAKKYEAARPEFIHD-------------GIRDVDAVLT 861
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
T E+L++++L + + D+ V G L+ G+SGG AE R A + L G
Sbjct: 862 TTEMLEMMELADIKPSEVVPQEFDEPYKQVSGAGILF---GASGGVAEAALRMAVEKLTG 918
Query: 258 KVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD--YQF 314
KV+ HLEF+ IR + +E ++V G T ++ A+ G +N + I+ K+ + D Y
Sbjct: 919 KVLTDHLEFEEIRGFEGVKESTIDVNG-TKVRVAVVSGLKNAEPIIEKI-LNGVDVGYDL 976
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETI--YLENVMLADPFK----NPLVRSL 368
+EVMACP GC+ G G P E I +LE L N+ ++ NP + L
Sbjct: 977 IEVMACPGGCICGAGHPVP-------EKIDSLEKRQQVLVNIDKVSKYRKSQENPDILRL 1029
Query: 369 YDEWLEQPGSEKAKKHVHTEYHP 391
Y+E+ +P S A + +HT Y P
Sbjct: 1030 YNEFYGEPNSPLAHELLHTHYTP 1052
>gi|125975482|ref|YP_001039392.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405]
gi|125715707|gb|ABN54199.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405]
Length = 644
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 125/383 (32%), Positives = 204/383 (53%), Gaps = 44/383 (11%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K V+ ++P R+ ++ FG+S + + LK LG +FD + + DLT++E EF
Sbjct: 200 KTVVGFVAPAVRSLISNTFGVSYEEASPFMAGLLKKLGFDKVFDFTFAADLTIVEETTEF 259
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
++R + + +P +S CPGWI + EK+ I+P++S+ KSPQ +GAT+K
Sbjct: 260 LSRIQ---------NKGVMPQFTSCCPGWINFVEKRYPE-IIPHLSTCKSPQMMMGATVK 309
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+H + +G ++++ V+++PC KK EAAR +F+ + RD VD+VLT
Sbjct: 310 NHYAKLMGINKEDLFVVSIVPCLAKKYEAARPEFI------HDGIRD-------VDAVLT 356
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
T E+L++++L + + D+ V G L+ G+SGG AE R A + L G
Sbjct: 357 TTEMLEMMELADIKPSEVVPQEFDEPYKQVSGAGILF---GASGGVAEAALRMAVEKLTG 413
Query: 258 KVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD--YQF 314
KV+ HLEF+ IR + +E ++V G T ++ A+ G +N + I+ K+ + D Y
Sbjct: 414 KVLTDHLEFEEIRGFEGVKESTIDVNG-TKVRVAVVSGLKNAEPIIEKI-LNGVDVGYDL 471
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETI--YLENVMLADPFK----NPLVRSL 368
+EVMACP GC+ G G P E I +LE L N+ ++ NP + L
Sbjct: 472 IEVMACPGGCICGAGHPVP-------EKIDSLEKRQQVLVNIDKVSKYRKSQENPDILRL 524
Query: 369 YDEWLEQPGSEKAKKHVHTEYHP 391
Y+E+ +P S A + +HT Y P
Sbjct: 525 YNEFYGEPNSPLAHELLHTHYTP 547
>gi|120602429|ref|YP_966829.1| hydrogenase, Fe-only [Desulfovibrio vulgaris DP4]
gi|120562658|gb|ABM28402.1| hydrogenase, Fe-only [Desulfovibrio vulgaris DP4]
Length = 606
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 124/377 (32%), Positives = 194/377 (51%), Gaps = 38/377 (10%)
Query: 21 IISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
+ +P R L E FG+ P V ++ T L+ LG + DT+ + DL ++E E +
Sbjct: 231 VFQFAPAVRVGLGEEFGLPPGSSVEGQVPTALRLLGADVVLDTNFAADLVIMEEGTELLQ 290
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
R R + LP+ +S CPGW+ +AEK L ILP++S+ +SPQQ +GA K +
Sbjct: 291 RL---------RGGAKLPLFTSCCPGWVNFAEKHLPD-ILPHVSTTRSPQQCLGALAKTY 340
Query: 140 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
+ + + P+ + V++MPC KK EAAR +F R +G+ +VD+VLTT
Sbjct: 341 LARTMNVAPERMRVVSLMPCTAKKEEAARPEF-----------RRDGVR--DVDAVLTTR 387
Query: 200 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLF 256
E L++ + ++ LE SP D L G G A G++GG E R L
Sbjct: 388 EFARLLRREGIDLAGLEPSPCDDPLM-----GRATGAAVIFGTTGGVMEAALRTVYHVLN 442
Query: 257 GKVIEGHLEFKTIRN-SDFREVALEV-EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
GK + +E +R + RE + + EG +K A+ +G + + +V V K D+ F
Sbjct: 443 GKEL-APVELHALRGYENVREAVVPLGEGNGSVKVAVVHGLKAARQMVEAVLAGKADHVF 501
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIK--TLETIYLENVMLADPFKNPLVRSLYDEW 372
VEVMACP GC++GGGQ + K +P + L ++ EN L NPL+ +Y+ +
Sbjct: 502 VEVMACPGGCMDGGGQPRSKRAHNPNAQARRAALFSLDAENA-LRQSHNNPLIGKVYESF 560
Query: 373 LEQPGSEKAKKHVHTEY 389
L +P S + + +HT Y
Sbjct: 561 LGEPCSNLSHRLLHTRY 577
>gi|254478298|ref|ZP_05091678.1| putative hydrogenase, Fe-only subfamily [Carboxydibrachium
pacificum DSM 12653]
gi|214035763|gb|EEB76457.1| putative hydrogenase, Fe-only subfamily [Carboxydibrachium
pacificum DSM 12653]
Length = 581
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 127/391 (32%), Positives = 212/391 (54%), Gaps = 47/391 (12%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K V+ +P R +L E FG+ P+ V K+ L+ +G ++FDT+ + DLT++E +
Sbjct: 224 KYVVAQTAPAVRVALGEEFGM-PVGTIVTGKMAAALRRMGFDAVFDTNFAADLTIMEEGS 282
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
E + R K LPM++S PGWI + EK +I +S+ KSP +GA
Sbjct: 283 ELLERIKHG---------GKLPMITSCSPGWIAFCEKYYPEFI-DNLSTCKSPHMMMGAL 332
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+K + +K G P +I+ V++MPC KKLE RE+ + G++ +VD+V
Sbjct: 333 VKSYYAEKKGLDPKDIFVVSIMPCTAKKLEIEREEMIRN-----------GMK--DVDAV 379
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
LTT E+ +I+ ++F L++ D+ L G ++G ++GG E R A+ +
Sbjct: 380 LTTRELARMIKEMGIDFVNLKDEEFDEPLGMSTGAGAIFG---ATGGVMEAALRTVAEIV 436
Query: 256 FGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
G+ I G ++F+ +R + RE + ++G + K A+ G N + ++ KVK + +Y F
Sbjct: 437 EGRDI-GKIDFEEVRGLEGVREATITIDGMDI-KIAIANGTGNAKKLLDKVKAGEVEYHF 494
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKEL--IKTL--ETIYL--ENVMLADPFKNPLVRSL 368
+EVM CP GC+ GGGQ P +P E+ +K L + IY +N+ + +NP ++ L
Sbjct: 495 IEVMGCPGGCIMGGGQ----PIHNPNEMEEVKKLRAKAIYEIDKNLPIRKSHENPAIKRL 550
Query: 369 YDEWLEQPGSEKAKKHVHTEY-----HPVVK 394
Y+E+L P SEK+ + +HT Y +P+VK
Sbjct: 551 YEEFLGHPLSEKSHELLHTHYSRKELYPLVK 581
>gi|406980696|gb|EKE02265.1| hypothetical protein ACD_20C00406G0010 [uncultured bacterium]
Length = 582
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 128/393 (32%), Positives = 210/393 (53%), Gaps = 38/393 (9%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIF 60
E+ S+ + I + K VI+ +P R ++ E G+ S + K+ T L+ +G +F
Sbjct: 216 ERSSIRQVFEAIYDTKKHVIVQTAPAIRVTIGEAMGMDSGVISTGKMVTSLRRIGFDKVF 275
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + DLT++E +E + R + LPM++S PGWI + E S I P
Sbjct: 276 DTNFAADLTIMEEGSELVERITK---------GGVLPMMTSCSPGWIKFIEHFYPSLI-P 325
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+S+ KSP Q +GA K + QK G P +I+ V++MPC KK E R + ++D
Sbjct: 326 NLSTCKSPHQMLGALAKSYYAQKQGIDPKDIFVVSIMPCTAKKYECQRSE--MEVD---- 379
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
EI +VD+VLTT E++ +++ ++F +LEES D +L G ++ G+S
Sbjct: 380 -------EIRDVDAVLTTRELVKVLKSLGIDFASLEESKFDSLLGIATGAGDIF---GAS 429
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQ 299
GG E R A + GK + +++F ++R + +E + ++G LK A+ +
Sbjct: 430 GGVMEAALRSAYYLITGKELS-YIDFYSVRGLEGAKEAVIPIDGMN-LKVAVVNSLSQAR 487
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT-LETIYL--ENVML 356
++ ++ + DY F+EVM CP GC+ GGGQ P + E IK L++IY N L
Sbjct: 488 KLMDRILKGEADYHFIEVMTCPGGCIAGGGQ----PINTDPERIKARLKSIYKIDANKGL 543
Query: 357 ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ NP V+ +Y+E+L++P SE + KH+HT Y
Sbjct: 544 RASYHNPDVQRVYEEFLKKPLSEVSHKHLHTHY 576
>gi|336422696|ref|ZP_08602838.1| hypothetical protein HMPREF0993_02215 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336007595|gb|EGN37618.1| hypothetical protein HMPREF0993_02215 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 580
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 129/400 (32%), Positives = 196/400 (49%), Gaps = 43/400 (10%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK + L I + K V++ +P RA L E FG P+ V K+ L+ +G
Sbjct: 207 LYEKDYTQKILDAIADPDKYVVVQTAPSVRAGLGEEFGY-PMGTDVEGKMAAALRRVGFD 265
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT + DLT++E E + R K + LPM++S PGWI Y E
Sbjct: 266 KVFDTDWAADLTIMEEATELLDRIK---------NGGVLPMITSCSPGWIKYCEHYFPD- 315
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+ +S+ KSPQQ GA +K + +K G P +I V+VMPC KK E R+D
Sbjct: 316 MTENLSTCKSPQQMFGAMLKTYFAEKEGIDPKKIVSVSVMPCTAKKFEIGRDD------- 368
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
+ +P+VD +TT E+ LI+ ++F L + D D G G A
Sbjct: 369 ------QDAAGVPDVDIAITTRELARLIRRCGIDFTVLPDEKFD------DPMGESTGAA 416
Query: 238 ---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCY 293
G++GG E R A + L G+ + +L+F +R + +E V G + K A+
Sbjct: 417 VIFGATGGVMEAALRTAVEVLTGEEL-ANLDFTDVRGTQGVKEATYNVAGMDV-KVAVAS 474
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
G N + ++ KVK + DYQF+E+M CP GC+NGGGQ + ++ + L
Sbjct: 475 GLGNARTLLNKVKSGEADYQFIEIMGCPGGCVNGGGQPQVSGDVRNFTDVRGIRASVLYQ 534
Query: 354 VMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
A P + NP ++ LY+E+L +PGS KA + +HT Y
Sbjct: 535 NDSAKPIRKSHENPAIKKLYEEYLGEPGSHKAHETLHTSY 574
>gi|219668075|ref|YP_002458510.1| hydrogenase, Fe-only [Desulfitobacterium hafniense DCB-2]
gi|219538335|gb|ACL20074.1| hydrogenase, Fe-only [Desulfitobacterium hafniense DCB-2]
Length = 1150
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 206/398 (51%), Gaps = 42/398 (10%)
Query: 10 FLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLT 69
F + + GK + ++P R+ ++ +G+S + + + LK +G +FD + + DLT
Sbjct: 697 FRAINDPGKTTVAFVAPAVRSVVSSQYGVSYQEASRFIAGLLKKIGFDKVFDFTFAADLT 756
Query: 70 LIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQ 129
++E EF+ R + S+ +P +S CPGW+ + E++ I+PY+SS KSPQ
Sbjct: 757 IVEETTEFLTRLQ---------SHKPIPQFTSCCPGWVNFVERRYPE-IIPYLSSCKSPQ 806
Query: 130 QTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEI 189
+GAT+K+H + P ++Y V+++PC KK EAAR +F R EG I
Sbjct: 807 MMMGATVKNHFTELTEIDPKDLYVVSIVPCIAKKYEAARPEF-----------RSEG--I 853
Query: 190 PEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFR 249
+VD+VLT+ E+L++ +K + +E + V G L+ G+SGG AE R
Sbjct: 854 RDVDAVLTSTEMLEMADIKLIEPADVEPQDFCEPYKRVSGAGILF---GASGGVAEAALR 910
Query: 250 HAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRK-VKM 307
A + L G+V+ L+++ +R +E A+E +GK + A+ G N++ I+ K ++
Sbjct: 911 MAVEKLTGEVLTDQLDYQEVRGLQGIKEAAVEAKGKK-VNVAVISGLHNVEPILEKIIEG 969
Query: 308 RKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETI--YLENVMLADPFK---- 361
+ Y +EVMACP GC+ G G P E I TLE L N+ ++
Sbjct: 970 MEVGYDLIEVMACPGGCICGAGHPVP-------EKIDTLEKRQQVLVNIDQTSRYRKSQE 1022
Query: 362 NPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 399
NP + LYDE+ + S A K +HT Y V + A+
Sbjct: 1023 NPDILRLYDEYYGEANSPLAHKLLHTHYEAVKREPVAK 1060
>gi|307718326|ref|YP_003873858.1| hypothetical protein STHERM_c06260 [Spirochaeta thermophila DSM
6192]
gi|306532051|gb|ADN01585.1| hypothetical protein STHERM_c06260 [Spirochaeta thermophila DSM
6192]
Length = 596
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 133/401 (33%), Positives = 214/401 (53%), Gaps = 41/401 (10%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKS 58
+ EK++++ + + K V+ ++P R +L E FG+ P + V K+ L+ LGV
Sbjct: 208 LYEKEAVERVWEALADPEKVVVAQIAPAVRVALGEEFGMKPGELVIGKIYAALRRLGVDY 267
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT++E EF+ R ++ + LP+++S PGWI +AE +
Sbjct: 268 VFDTNFSADLTIMEEGTEFLHRLEKGER---------LPLITSCSPGWIKFAETYYPD-L 317
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
LP++S+ KSPQQ +GA +K + Q G P I +++MPC KK EA RE+
Sbjct: 318 LPHLSTCKSPQQMMGAVVKTYFAQAKGIPPSRIVSLSIMPCTAKKFEAQREEM------- 370
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
RD G +VD VLTT E+ +I+ + F+ L+E P D +L++ G ++ G
Sbjct: 371 ----RDSGFW--DVDIVLTTRELARMIRQAGIRFDQLKEEPADPVLSSYSGAGTIF---G 421
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R A + GK + +EF +R +E +E+ G T ++ A+ +G N
Sbjct: 422 ATGGVMEAALRTAYEIKTGKSLP-KVEFAQVRGVKGVKEAVIELNG-TQIRVAVAHGLSN 479
Query: 298 LQNIVRKVKMRK-----CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE 352
+ ++ +V+ K Y F+EVMACP GC+ GGGQ P P + +E + L Y E
Sbjct: 480 ARKVLDRVREAKERGEPLPYHFIEVMACPGGCVGGGGQPLPSPLKKREERLMGL---YAE 536
Query: 353 NVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
+ L +NP VR+LY+ +L++P E +HT Y P
Sbjct: 537 DSALPVRKSHENPEVRALYEHFLKEPNGELPHTLLHTHYEP 577
>gi|239905421|ref|YP_002952160.1| Fe hydrogenase [Desulfovibrio magneticus RS-1]
gi|239795285|dbj|BAH74274.1| putative Fe hydrogenase [Desulfovibrio magneticus RS-1]
Length = 685
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 130/398 (32%), Positives = 199/398 (50%), Gaps = 42/398 (10%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
++ + +DE L+ + + K V+ ++P R L E F SP V ++ LK LG
Sbjct: 205 LVPRSEMDEVLTALADPTKTVVAQVAPAVRVGLGECFA-SPAGDPVMGRMVAALKRLGFD 263
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+++DT+ + DLT+IE EF+ R ++ LP +S CPGW+ +AE+
Sbjct: 264 AVYDTTFAADLTVIEEGQEFLTRAAAGEK---------LPQFTSCCPGWVQFAEQSF-PE 313
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+LP +SS +SPQQ G+ +K + +K G ++ V++MPC KK EA R +F +D
Sbjct: 314 LLPNLSSCRSPQQMFGSLVKEMLPEKQGIARKDLIVVSIMPCTAKKFEARRPEFA--VDG 371
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
P+VD VLTT E+ +I + F +LE LD G ++G
Sbjct: 372 S-----------PDVDFVLTTQELARMIDGAGLRFNSLEPESLDMPFGFGTGAGVIFG-- 418
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIR-NSDFREVALEVEGKTLLKFALCYGFQ 296
+SGG E V R AA+ + GK + ++F +R +S RE LEV GKTL + A+ +G
Sbjct: 419 -ASGGVTEAVLRFAAEKITGKPL-ASVDFAEVRGDSGLREATLEVGGKTL-RLAIVHGLA 475
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKP----GQSPKELIKTLETIYLE 352
N + + +V +Y +EVMACP GC+ G GQ PK + K+L + +T L
Sbjct: 476 NARAVAEQVVAGNSEYDLIEVMACPGGCIGGAGQPVPKDLADRKRRTKDLYQCDKTFPLH 535
Query: 353 NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
N V YD++L G KA +HT Y
Sbjct: 536 KAQ-----DNMFVTECYDKFLGDVGGHKAHSLLHTHYQ 568
>gi|150021476|ref|YP_001306830.1| hydrogenase, Fe-only [Thermosipho melanesiensis BI429]
gi|149793997|gb|ABR31445.1| hydrogenase, Fe-only [Thermosipho melanesiensis BI429]
Length = 582
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 133/378 (35%), Positives = 200/378 (52%), Gaps = 30/378 (7%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K ++ +P R +L E FG+ P V K+ LK LG +FDT+ + DLT++E
Sbjct: 219 KEKILVAQTAPSVRVALGEEFGMEPGSVSTGKMVASLKKLGFDYVFDTNFAADLTIVEEG 278
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
E + R+K+ PM +S CPGWI EK +I P +SS KSPQQ + +
Sbjct: 279 TELVERFKE---------GGPFPMFTSCCPGWINLLEKIYPEFI-PNVSSAKSPQQMMSS 328
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
+K + +K+G P++I V+VMPC KK E R Q++ ++G EI D
Sbjct: 329 VVKTYFAKKIGVDPEDIIMVSVMPCTAKKDEIKR--------PQQKIKLEDGREIQTTDY 380
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V+TT E+ LI+LK +NF L+++ D L ++GV +GG E R A +
Sbjct: 381 VITTRELAKLIKLKEINFAGLQDAEFDNPLGTSTGAAAIFGV---TGGVMEAALRTAYEV 437
Query: 255 LFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
+ K + LEF +R D RE +++EGK +K A+ +G N++ ++ ++ K Y
Sbjct: 438 ITNKELP-KLEFTAVRGLDGIREAEIDIEGKK-VKVAIAHGTANVRKLLDDIRDGKRYYD 495
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDE 371
F+E+MACP GC+ GGGQ K P L K IY E L +NP ++ LY+E
Sbjct: 496 FIEIMACPGGCIGGGGQPK---SLDPDILKKRAMAIYSIDELSTLRKSHENPDIQKLYEE 552
Query: 372 WLEQPGSEKAKKHVHTEY 389
+LE+P S A + +HT Y
Sbjct: 553 FLEKPNSHIAHELLHTYY 570
>gi|156062172|ref|XP_001597008.1| hypothetical protein SS1G_01201 [Sclerotinia sclerotiorum 1980]
gi|259511273|sp|A7E7C4.1|NAR1_SCLS1 RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|154696538|gb|EDN96276.1| hypothetical protein SS1G_01201 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 571
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 132/368 (35%), Positives = 187/368 (50%), Gaps = 73/368 (19%)
Query: 17 GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-GVKS----------IFDTSCS 65
GK + S+SPQSRAS+A FG++ + + L G+K+ + DT+ +
Sbjct: 115 GKIYVASVSPQSRASIAATFGVTEREAGYMIEHLLSGPKGIKNRAVYRNAFQWVVDTNIT 174
Query: 66 RDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSV 125
R+ L+ E IA + S P+L+S+CPGW+CYAEK ++LP++S +
Sbjct: 175 REACLVLGAEEVIASMTDT--------GSKKPVLTSSCPGWVCYAEKTH-PHVLPHLSRM 225
Query: 126 KSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDE 185
KSPQ +G IK + +KLG PD I+HV VMPC+DKKLEA+RE+ D+ E
Sbjct: 226 KSPQALMGTLIKTTLSRKLGISPDRIWHVAVMPCFDKKLEASREELT---DAVWEGTGTR 282
Query: 186 GLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP-------------LDKML--TNVDDE 230
G+ +VDSV+T+ E+L L + + F L +P +D L +N
Sbjct: 283 GVR--DVDSVITSKELLMLADSRGIEFSKLPRTPIPTSSRIPFPDTKIDSFLFPSNRKGS 340
Query: 231 GHLYGVAGSSGG---YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GKTL 286
G+ AG+SGG YA F K + I+G RN D + + E G+ L
Sbjct: 341 GNGNRDAGTSGGNLHYALHYFASQHKGSSIQTIKG-------RNVDVVDYTVVAENGEIL 393
Query: 287 LKFALCYGFQNLQNIVRKVKMRK----------------------CDYQFVEVMACPSGC 324
LK A YGF+N+QN+VR++K K DY +VEVMACP GC
Sbjct: 394 LKAARYYGFRNIQNLVRRLKPAKPSRMPGGKPIGSARRPNGKASGPDYSYVEVMACPGGC 453
Query: 325 LNGGGQIK 332
NGGGQIK
Sbjct: 454 TNGGGQIK 461
>gi|397691471|ref|YP_006528725.1| Fe-only hydrogenase, catalytic subunit alpha [Melioribacter roseus
P3M]
gi|395812963|gb|AFN75712.1| Fe-only hydrogenase, catalytic subunit alpha [Melioribacter roseus
P3M]
Length = 576
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 121/395 (30%), Positives = 213/395 (53%), Gaps = 38/395 (9%)
Query: 1 MLEKQSLDEFLSNIN-KGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ E+ E ++ +N K K ++ ++P RA+L E + + P+ V K+ T L+ LG
Sbjct: 204 LRERSHAKEVVNALNDKKKFTVVQVAPAVRATLGEEYNL-PIGTNVTGKIITGLRRLGFD 262
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT+ DLT++E E I R + PM +S CPGWI +AE+ +
Sbjct: 263 KVFDTNFGADLTILEEATELINRLGNGGVT---------PMFTSCCPGWIKFAEQNY-PH 312
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+L ++S+ KSP + GA IK + +K+G P++I+ V++MPC KK EA+R + S
Sbjct: 313 LLEHLSTCKSPHEMEGAIIKSYYAKKMGLNPEDIFVVSIMPCTVKKFEASRPEL-----S 367
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
++ ++P+VD+VLTT E++ L ++ ++F L + D L ++
Sbjct: 368 ED--------KMPDVDAVLTTRELVRLFKVAGIDFNDLPDDEFDNPLGESTGAAAIF--- 416
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQ 296
G+SGG E R A L GK +E +++ +R D +E ++++ G T + A+ G
Sbjct: 417 GTSGGVMEAALRTAYFKLSGKELE-NVDLTNVRGFDGVKEFSVDINGST-VNVAVVNGIG 474
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVML 356
N++ I+ +++ + Y F+EVMACP GC+NGGGQ Q P+++ K +Y + +
Sbjct: 475 NVRGILEQIERGESKYHFIEVMACPGGCINGGGQ---PIHQKPEKVQKRARALYEIDAKM 531
Query: 357 AD--PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ +N ++ LY+E+L +P + + +HT Y
Sbjct: 532 KNRKSHENESLKKLYNEFLGEPNGHLSHELLHTTY 566
>gi|20807375|ref|NP_622546.1| NADH dehydrogenase/NADH:ubiquinone oxidoreductase subunit G
[Thermoanaerobacter tengcongensis MB4]
gi|20515894|gb|AAM24150.1| NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit
(chain G) [Thermoanaerobacter tengcongensis MB4]
Length = 581
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/391 (32%), Positives = 212/391 (54%), Gaps = 47/391 (12%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K V+ +P R +L E FG+ P+ V K+ L+ +G ++FDT+ + DLT++E +
Sbjct: 224 KYVVAQTAPAVRVALGEEFGM-PVGTIVTGKMAAALRRMGFDAVFDTNFAADLTIMEEGS 282
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
E + R K LPM++S PGWI + EK +I +S+ KSP +GA
Sbjct: 283 ELLERIKHG---------GKLPMITSCSPGWIAFCEKYYPEFI-DNLSTCKSPHMMMGAL 332
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+K + +K G P +I+ V++MPC KKLE RE+ + G++ +VD+V
Sbjct: 333 VKSYYAEKKGLDPKDIFVVSIMPCTAKKLEIEREEMI-----------RNGMK--DVDAV 379
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
LTT E+ +I+ ++F L++ D+ L G ++G ++GG E R A+ +
Sbjct: 380 LTTRELARMIKEMGIDFVNLKDEEFDEPLGMSTGAGAIFG---ATGGVMEAALRTVAEIV 436
Query: 256 FGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
G+ I G ++F+ +R + RE + ++G + K A+ G N + ++ KVK + +Y F
Sbjct: 437 EGRDI-GKIDFEEVRGLEGVREATITIDGMDI-KIAIANGTGNAKKLLDKVKAGEVEYHF 494
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKEL--IKTL--ETIYL--ENVMLADPFKNPLVRSL 368
+EVM CP GC+ GGGQ P +P E+ +K L + IY +N+ + +NP ++ L
Sbjct: 495 IEVMGCPGGCIMGGGQ----PIHNPNEMEEVKKLRAKAIYEIDKNLPIRKSHENPAIKRL 550
Query: 369 YDEWLEQPGSEKAKKHVHTEY-----HPVVK 394
Y+E+L P SEK+ + +HT Y +P+VK
Sbjct: 551 YEEFLGYPLSEKSHELLHTHYSRKELYPLVK 581
>gi|46580181|ref|YP_010989.1| [Fe] hydrogenase gamma [Desulfovibrio vulgaris str. Hildenborough]
gi|387153384|ref|YP_005702320.1| hydrogenase, Fe-only [Desulfovibrio vulgaris RCH1]
gi|40828|emb|CAA40970.1| Hyd gamma [Desulfovibrio vulgaris str. Hildenborough]
gi|46449598|gb|AAS96248.1| [Fe] hydrogenase gamma [Desulfovibrio vulgaris str. Hildenborough]
gi|311233828|gb|ADP86682.1| hydrogenase, Fe-only [Desulfovibrio vulgaris RCH1]
gi|226889|prf||1610171A hydrogenase gamma
Length = 606
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 124/377 (32%), Positives = 194/377 (51%), Gaps = 38/377 (10%)
Query: 21 IISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
+ +P R L E FG+ P V ++ T L+ LG + DT+ + DL ++E E +
Sbjct: 231 VFQFAPAVRVGLGEEFGLPPGSSVEGQVPTALRLLGADVVLDTNFAADLVIMEEGTELLQ 290
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
R R + LP+ +S CPGW+ +AEK L ILP++S+ +SPQQ +GA K +
Sbjct: 291 RL---------RGGAKLPLFTSCCPGWVNFAEKHLPD-ILPHVSTTRSPQQCLGALAKTY 340
Query: 140 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
+ + + P+ + V++MPC KK EAAR +F R +G+ +VD+VLTT
Sbjct: 341 LARTMNVAPERMRVVSLMPCTAKKEEAARPEF-----------RRDGVR--DVDAVLTTR 387
Query: 200 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKTLF 256
E L++ + ++ LE SP D L G G A G++GG E R L
Sbjct: 388 EFARLLRREGIDLAGLEPSPCDDPLM-----GRATGAAVIFGTTGGVMEAALRTVYHVLN 442
Query: 257 GKVIEGHLEFKTIRN-SDFREVALEV-EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
GK + +E +R + RE + + EG +K A+ +G + + +V V K D+ F
Sbjct: 443 GKEL-APVELHALRGYENVREAVVPLGEGNGSVKVAVVHGLKAARQMVEAVLAGKADHVF 501
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIK--TLETIYLENVMLADPFKNPLVRSLYDEW 372
VEVMACP GC++GGGQ + K +P + L ++ EN L NPL+ +Y+ +
Sbjct: 502 VEVMACPGGCMDGGGQPRSKRAYNPNAQARRAALFSLDAENA-LRQSHNNPLIGKVYESF 560
Query: 373 LEQPGSEKAKKHVHTEY 389
L +P S + + +HT Y
Sbjct: 561 LGEPCSNLSHRLLHTRY 577
>gi|167761227|ref|ZP_02433354.1| hypothetical protein CLOSCI_03632 [Clostridium scindens ATCC 35704]
gi|167660893|gb|EDS05023.1| hydrogenase, Fe-only [Clostridium scindens ATCC 35704]
Length = 583
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 129/400 (32%), Positives = 196/400 (49%), Gaps = 43/400 (10%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK + L I + K V++ +P RA L E FG P+ V K+ L+ +G
Sbjct: 210 LYEKDYTQKILDAIADPDKYVVVQTAPSVRAGLGEEFGY-PMGTDVEGKMAAALRRVGFD 268
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
IFDT + DLT++E E + R K + LPM++S PGWI Y E
Sbjct: 269 KIFDTDWAADLTIMEEATELLDRIK---------NGGVLPMITSCSPGWIKYCEHYFPD- 318
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+ +S+ KSPQQ GA +K + +K G P +I V+VMPC KK E R+D
Sbjct: 319 MTENLSTCKSPQQMFGAMLKTYFAEKEGIDPKKIVSVSVMPCTAKKFEIGRDD------- 371
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
+ +P+VD +TT E+ LI+ ++F L + D D G G A
Sbjct: 372 ------QDAAGVPDVDIAITTRELARLIRRCGIDFTVLPDEKFD------DPMGESTGAA 419
Query: 238 ---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCY 293
G++GG E R A + L G+ + +L+F +R + +E V G + K A+
Sbjct: 420 VIFGATGGVMEAALRTAVEVLTGEEL-ANLDFTDVRGTQGVKEATYNVAGMDV-KVAVAS 477
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
G N + ++ KVK + DY+F+E+M CP GC+NGGGQ + ++ + L
Sbjct: 478 GLGNARTLLNKVKSGEADYKFIEIMGCPGGCVNGGGQPQVSGDVRNFTDVRGIRASVLYQ 537
Query: 354 VMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
A P + NP ++ LY+E+L +PGS KA + +HT Y
Sbjct: 538 NDSAKPIRKSHENPAIKKLYEEYLGEPGSHKAHETLHTSY 577
>gi|353234303|emb|CCA66329.1| related to NAR1-similarity to human nuclear prelamin A recognition
factor [Piriformospora indica DSM 11827]
Length = 565
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 188/374 (50%), Gaps = 83/374 (22%)
Query: 18 KAVIISLSPQSRASL-----AEHFGISPLQ--VFKKLTTFLKS-LGVKSIFDTSCSRDLT 69
K ++S+SPQS ASL A+ SP V + F + LG + +FDT+ +R +
Sbjct: 118 KIPVLSISPQSLASLCSVSRAKSSSGSPSMRGVLDSVKAFASAELGFEHVFDTTFARHMA 177
Query: 70 LIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQ 129
L E I Y++ + + SLPML+SACPGWICYAEK +LP+IS KSPQ
Sbjct: 178 L----REHILEYEERSAAFKNKEEGSLPMLASACPGWICYAEKAHAE-MLPFISRTKSPQ 232
Query: 130 QTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEI 189
Q +G +K + +KL R IYHVTVMPCYDKKLEA+R+DF E YR
Sbjct: 233 QVMGTLVKEWLGRKLQKR--RIYHVTVMPCYDKKLEASRQDFY------NEQYRTR---- 280
Query: 190 PEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG-SSGGYAETVF 248
+VD VLTTGE+ +L+ +K N + SP + D L+ G SSGG+ + +
Sbjct: 281 -DVDCVLTTGELENLMSIKRWNSDHQNHSPALETFGIPD----LFMPPGSSSGGWLQVII 335
Query: 249 RHAA--KTLFGKVIEGHLEFKTIRNSDFREVALEV-----EGKTLLKFALCYGFQNLQNI 301
H + L G+ ++ KTIR SD+ +V +E + + + + A CYGF+NLQN+
Sbjct: 336 DHIVERERLQGRTC--NIRTKTIRTSDYEDVVVEAVNQFNQTEVVFRGAKCYGFRNLQNV 393
Query: 302 VRKVKMRKC-------------------------------------------DYQFVEVM 318
VRKV Y +VEVM
Sbjct: 394 VRKVAKEAGVKGSGSAGRATRGRVTGVTAALRARRARKGEEALTQTELGDDRPYDYVEVM 453
Query: 319 ACPSGCLNGGGQIK 332
ACP+GC+NGGGQ +
Sbjct: 454 ACPAGCVNGGGQAR 467
>gi|222099459|ref|YP_002534027.1| NADP-reducing hydrogenase, subunit D [Thermotoga neapolitana DSM
4359]
gi|221571849|gb|ACM22661.1| NADP-reducing hydrogenase, subunit D [Thermotoga neapolitana DSM
4359]
Length = 600
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 131/378 (34%), Positives = 203/378 (53%), Gaps = 33/378 (8%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K +++ +P R ++ E FG +P V +L L+ LG +FDT+ DLT++E
Sbjct: 240 KEKILVVQTAPSVRVAIGEEFGYAPGTVSTGQLVAALRRLGFDYVFDTNFGADLTIMEEG 299
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
+EF+ R ++ D LPM +S CPGW+ EK + + +SS KSPQ + A
Sbjct: 300 SEFLERLEKGDLED-------LPMFTSCCPGWVNLVEK-VYPELRTRLSSAKSPQGMLSA 351
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
+K + +KLG +P++I+HV++MPC KK EA R+ + +P VD
Sbjct: 352 LVKTYFAEKLGVKPEDIFHVSIMPCTAKKDEAMRKQLMVN-------------GVPAVDV 398
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
VLTT E+ LI++K + F L E D L L+GV +GG E R A +
Sbjct: 399 VLTTRELGKLIRIKKIPFANLPEEEYDAPLGISTGAAALFGV---TGGVMEAALRTAYEL 455
Query: 255 LFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
GK + L F+ +R +E +E++G+ + + A+ +G N++N+V K+ R+ Y
Sbjct: 456 KTGKTLP-KLVFEDVRGLKGVKEAEVELDGQKI-RVAVVHGTANVRNLVEKILRREVKYH 513
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDE 371
FVEVMACP GC+ GGGQ + P+ L K E IY E + + +NP ++ LY+E
Sbjct: 514 FVEVMACPGGCIGGGGQ---PYSRDPEVLRKRAEAIYTIDERMTIRKSHENPAIKKLYEE 570
Query: 372 WLEQPGSEKAKKHVHTEY 389
+LE P S +A + +HT Y
Sbjct: 571 YLEHPLSHRAHELLHTYY 588
>gi|170288544|ref|YP_001738782.1| hydrogenase, Fe-only [Thermotoga sp. RQ2]
gi|170176047|gb|ACB09099.1| hydrogenase, Fe-only [Thermotoga sp. RQ2]
Length = 582
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 130/379 (34%), Positives = 203/379 (53%), Gaps = 33/379 (8%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
K K +++ +P R ++ E FG +P + ++ L+ LG +FDT+ DLT++E
Sbjct: 221 KKEKILVVQTAPSVRVAIGEEFGYAPGTISTGQMVAALRRLGFDYVFDTNFGADLTIMEE 280
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EF+ R ++ D LPM +S CPGW+ EK + + +SS KSPQ +
Sbjct: 281 GSEFLERLEKGDLED-------LPMFTSCCPGWVNLVEK-VYPELRTRLSSAKSPQGMLS 332
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A +K + +KLG +P++I+HV++MPC KK EA R+ + +P VD
Sbjct: 333 ALVKTYFAEKLGVKPEDIFHVSIMPCTAKKDEALRKQLMVN-------------GVPAVD 379
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
VLTT E+ LI++K + F L E D L L+GV +GG E R A +
Sbjct: 380 VVLTTRELGKLIRMKKIPFANLPEEEYDAPLGISTGAAALFGV---TGGVMEAALRTAYE 436
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
GK + + F+ +R +E ++++GK + + A+ +G N++N+V K+ R+ Y
Sbjct: 437 LKTGKTLP-KIVFEDVRGLKGVKEAEIDLDGKKI-RIAVVHGTANVRNLVEKILRREVKY 494
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYD 370
FVEVMACP GC+ GGGQ + P+ L K E IY E + L +NP ++ LY+
Sbjct: 495 HFVEVMACPGGCIGGGGQ---PYSRDPEILRKRAEAIYTIDERMTLRKSHENPAIKKLYE 551
Query: 371 EWLEQPGSEKAKKHVHTEY 389
E+LE P S KA + +HT Y
Sbjct: 552 EYLEHPLSHKAHELLHTYY 570
>gi|148269859|ref|YP_001244319.1| hydrogenase, Fe-only [Thermotoga petrophila RKU-1]
gi|147735403|gb|ABQ46743.1| hydrogenase, Fe-only [Thermotoga petrophila RKU-1]
Length = 582
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 130/379 (34%), Positives = 204/379 (53%), Gaps = 33/379 (8%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
K K +++ +P R ++ E FG +P + ++ L+ LG +FDT+ DLT++E
Sbjct: 221 KKEKILVVQTAPSVRVAIGEEFGYAPGTISTGQMVAALRRLGFDYVFDTNFGADLTIMEE 280
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EF+ R ++ D LPM +S CPGW+ EK + + +SS KSPQ +
Sbjct: 281 GSEFLERLEKGDLED-------LPMFTSCCPGWVNLVEK-VYPELRTRLSSAKSPQGMLS 332
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A +K + +KLG +P++I+HV++MPC KK EA R+ + +P VD
Sbjct: 333 ALVKTYFAEKLGVKPEDIFHVSIMPCTAKKDEALRKQLMVN-------------GVPAVD 379
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
VLTT E+ LI++K + F L E D L L+GV +GG E R A +
Sbjct: 380 VVLTTRELGKLIRMKKIPFANLPEEEYDAPLGISTGAAVLFGV---TGGVMEAALRTAYE 436
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
GK + + F+ +R +E ++++GK + + A+ +G N++N+V K+ R+ Y
Sbjct: 437 LKTGKTLP-KIVFEDVRGLKGVKEAEIDLDGKKI-RIAVVHGTANVRNLVEKILRREVKY 494
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYD 370
FVEVMACP GC+ GGGQ + P+ L K E IY E ++L +NP ++ LY+
Sbjct: 495 HFVEVMACPGGCIGGGGQ---PYSRDPEILRKRAEAIYTIDERMVLRKSHENPAIKKLYE 551
Query: 371 EWLEQPGSEKAKKHVHTEY 389
E+LE P S KA + +HT Y
Sbjct: 552 EYLEHPLSHKAHELLHTYY 570
>gi|339443430|ref|YP_004709435.1| hypothetical protein CXIVA_23660 [Clostridium sp. SY8519]
gi|338902831|dbj|BAK48333.1| hypothetical protein CXIVA_23660 [Clostridium sp. SY8519]
Length = 583
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 131/395 (33%), Positives = 200/395 (50%), Gaps = 44/395 (11%)
Query: 8 DEFLSNINKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCS 65
D F + + K VI+ +P RA+L E F P+ V K+ L+ LG +FDT +
Sbjct: 215 DVFDAIADPTKRVIVQTAPAVRAALGEEFDY-PIGTDVEGKMAAALRRLGFDDVFDTDFA 273
Query: 66 RDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSV 125
DLT++E NE I R + LPM++S PGWI Y E +LP++SS
Sbjct: 274 ADLTIMEEANELIERVT---------NGGVLPMMTSCSPGWIKYCEHYFPD-LLPHLSSC 323
Query: 126 KSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDE 185
K+P GA K + K+G ++ V+VMPC KK E R D ++
Sbjct: 324 KAPHTMFGAIAKSYYADKIGVDKKDLVVVSVMPCTAKKFEITRPD-------------ED 370
Query: 186 GLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA---GSSGG 242
G +P+VD V+TT E+ +I++ + F L + D L G G A G++GG
Sbjct: 371 GAGVPDVDIVITTRELARMIRMAGIQFRDLPDEKFDAPL------GLGTGAAVIFGATGG 424
Query: 243 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNI 301
E R A + + G+ + L+FK +R +D +E +++G T +K A+ + ++
Sbjct: 425 VMEAALRTAYEKITGEELPA-LDFKEVRGTDGIKEATYDLKG-TKMKVAVASSTKCAHDL 482
Query: 302 VRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG--QSPKELIKTLETIYLE---NVML 356
++KV+ + DY F+EVM CP GC+NGGGQ + +PG ++ +L K E N
Sbjct: 483 MKKVQSGEADYTFIEVMGCPGGCVNGGGQPQ-QPGYVRNTVDLAKERAKALYENDRNCTY 541
Query: 357 ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
+NP + LYDE+L QPGS A + +HT Y P
Sbjct: 542 RKSHENPAIIQLYDEFLGQPGSHLAHELLHTTYIP 576
>gi|169247661|gb|ACA51661.1| HydA [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
Length = 584
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 203/382 (53%), Gaps = 36/382 (9%)
Query: 14 INKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+++ K V++ +P R +L E FG+ + K+ + LK LG +FDT + DLT+IE
Sbjct: 223 LDEKKYVVVQTAPAVRVALGEEFGMPYGSIVTGKMVSALKRLGFDKVFDTDFAADLTIIE 282
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
NE + R + LPM++S PGWI Y E+ +I +S+ KSP +
Sbjct: 283 EGNELLKRLNEG---------GKLPMITSCSPGWINYCERYYPEFI-DNLSTCKSPHMMM 332
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
GA IK + +K G P +I+ V++MPC KK E R + +G++ +V
Sbjct: 333 GAIIKSYFAEKEGIDPKDIFVVSIMPCTAKKYEIDRPQMIV-----------DGMK--DV 379
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D+VLTT E+ +I+ ++F L +S D L G ++G ++GG E R A
Sbjct: 380 DAVLTTRELARMIKQSGIDFVNLPDSEYDNPLGESSGAGVIFG---ATGGVMEAALRTVA 436
Query: 253 KTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
+ GK IE + E++ +R + +E +++ GK + K A+ G N + ++ K+K + +
Sbjct: 437 DIVEGKDIE-NFEYEEVRGLEGIKEAKIDIGGKEI-KIAVANGTGNAKKLLDKIKNGEAE 494
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT--LETIYL--ENVMLADPFKNPLVRS 367
Y F+EVM CP GC+ GGGQ P + K+L++ L+ IY +++ + KNP++
Sbjct: 495 YHFIEVMGCPGGCIMGGGQPIHNPNE--KDLVRKSRLKAIYEADKDLPIRKSHKNPMITK 552
Query: 368 LYDEWLEQPGSEKAKKHVHTEY 389
LY+E+L P EK+ +HT Y
Sbjct: 553 LYEEFLISPLGEKSHHLLHTTY 574
>gi|281419484|ref|ZP_06250498.1| hydrogenase, Fe-only [Clostridium thermocellum JW20]
gi|281406890|gb|EFB37154.1| hydrogenase, Fe-only [Clostridium thermocellum JW20]
Length = 1149
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 120/378 (31%), Positives = 204/378 (53%), Gaps = 34/378 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K V+ ++P R+ ++ FG+S + + LK LG +FD + + DLT++E EF
Sbjct: 705 KTVVGFVAPAVRSLISSTFGVSYEEASPFMAGLLKKLGFDKVFDFTFAADLTIVEETTEF 764
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
++R + + +P +S CPGWI + EK+ I+P++S+ KSPQ +GAT+K
Sbjct: 765 LSRIQ---------NKGVMPQFTSCCPGWINFVEKRYPE-IIPHLSTCKSPQMMMGATVK 814
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+H + +G ++++ V+++PC KK EAAR +F+ I +VD+VLT
Sbjct: 815 NHYAKLMGINKEDLFVVSIVPCLAKKYEAARPEFIHD-------------GIRDVDAVLT 861
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
T E+L++++L + + D+ V G L+ G+SGG AE R A + L G
Sbjct: 862 TTEMLEMMELADIKPSEVVPQEFDEPYKQVSGAGILF---GASGGVAEAALRMAVEKLTG 918
Query: 258 KVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD--YQF 314
KV+ HLEF+ IR + +E ++ G T ++ A+ G +N + I+ K+ + D Y
Sbjct: 919 KVLTDHLEFEEIRGFEGVKESTIDANG-TKVRVAVVSGLKNAEPIIEKI-LNGVDVGYDL 976
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM-LADPFKNPLVRSLYDEWL 373
+EVMACP GC+ G G P+ S ++ + L + ++ V+ +NP + LY+E+
Sbjct: 977 IEVMACPGGCICGAGHPVPEKIDSLEKRQQVL--VNIDKVLKYRKSQENPDILRLYNEFY 1034
Query: 374 EQPGSEKAKKHVHTEYHP 391
+P S A + +HT Y P
Sbjct: 1035 GEPNSPLAHELLHTHYTP 1052
>gi|386346388|ref|YP_006044637.1| hydrogenase, Fe-only [Spirochaeta thermophila DSM 6578]
gi|339411355|gb|AEJ60920.1| hydrogenase, Fe-only [Spirochaeta thermophila DSM 6578]
Length = 597
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/401 (33%), Positives = 214/401 (53%), Gaps = 41/401 (10%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKS 58
+ EK++++ + + K V+ ++P R +L E FG+ P + V K+ L+ LGV
Sbjct: 209 LYEKEAVERVWEALADPEKVVVAQIAPAVRVALGEEFGMKPGELVIGKIYAALRRLGVDY 268
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT++E EF+ R ++ + LP+++S PGWI +AE +
Sbjct: 269 VFDTNFSADLTIMEEGTEFLHRLEKGER---------LPLITSCSPGWIKFAETYYPD-L 318
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
LP++S+ KSPQQ +GA +K + Q G P I ++VMPC KK EA RE+
Sbjct: 319 LPHLSTCKSPQQMMGAVVKTYFAQAKGIPPSRIVSLSVMPCTAKKFEAQREEM------- 371
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
RD G +VD VLTT E+ +I+ + F+ L+E P D +L++ ++ G
Sbjct: 372 ----RDSGFW--DVDIVLTTRELARMIRQAGIRFDQLKEEPADPVLSSYSGAATIF---G 422
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R A + GK + +EF +R +E +E+ G T ++ A+ +G N
Sbjct: 423 ATGGVMEAALRTAYELKTGKSLP-RVEFAQVRGVKGVKEAVIELNG-TQIRVAVAHGLSN 480
Query: 298 LQNIVRKVKMRK-----CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE 352
+ ++ +V+ K Y F+EVMACP GC+ GGGQ P P + +E + L Y E
Sbjct: 481 ARKVLDRVREAKERGEPLPYHFIEVMACPGGCVGGGGQPLPSPLKKREERLMGL---YAE 537
Query: 353 NVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
+ L+ +NP VR+LY+ +L++P E +HT Y P
Sbjct: 538 DGALSVRKSHENPEVRALYEHFLKEPNGELPHTLLHTHYEP 578
>gi|390935224|ref|YP_006392729.1| hydrogenase, Fe-only [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389570725|gb|AFK87130.1| hydrogenase, Fe-only [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 581
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 203/382 (53%), Gaps = 36/382 (9%)
Query: 14 INKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+++ K V++ +P R +L E FG+ + K+ + LK LG +FDT + DLT+IE
Sbjct: 220 LDEKKYVVVQTAPAVRVALGEEFGMPYGSIVTGKMVSALKRLGFDKVFDTDFAADLTIIE 279
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
NE + R + LPM++S PGWI Y E+ +I +S+ KSP +
Sbjct: 280 EGNELLKRLNEG---------GKLPMITSCSPGWINYCERYYPEFI-DNLSTCKSPHMMM 329
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
GA IK + +K G P +I+ V++MPC KK E R + +G++ +V
Sbjct: 330 GAIIKSYFAEKEGIDPKDIFVVSIMPCTAKKYEIDRPQMIV-----------DGMK--DV 376
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D+VLTT E+ +I+ ++F L +S D L G ++G ++GG E R A
Sbjct: 377 DAVLTTRELARMIKQSGIDFVNLPDSEYDNPLGESSGAGVIFG---ATGGVMEAALRTVA 433
Query: 253 KTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
+ GK IE + E++ +R + +E +++ GK + K A+ G N + ++ K+K + +
Sbjct: 434 DIVEGKDIE-NFEYEEVRGLEGIKEAKIDIGGKEI-KIAVANGTGNAKKLLDKIKNGEAE 491
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT--LETIYL--ENVMLADPFKNPLVRS 367
Y F+EVM CP GC+ GGGQ P + K+L++ L+ IY +++ + KNP++
Sbjct: 492 YHFIEVMGCPGGCIMGGGQPIHNPNE--KDLVRKSRLKAIYEADKDLPIRKSHKNPMITK 549
Query: 368 LYDEWLEQPGSEKAKKHVHTEY 389
LY+E+L P EK+ +HT Y
Sbjct: 550 LYEEFLISPLGEKSHHLLHTTY 571
>gi|220931030|ref|YP_002507938.1| NADH dehydrogenase I subunit G [Halothermothrix orenii H 168]
gi|219992340|gb|ACL68943.1| NADH dehydrogenase I subunit G [Halothermothrix orenii H 168]
Length = 666
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 203/380 (53%), Gaps = 35/380 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+ K V++ ++P R ++ E FG+ P ++ +L LK LG +FDTS + DLT++E
Sbjct: 219 DPAKTVVVQIAPAVRVAIGEEFGMEPGEIQMGQLVAALKRLGFDKVFDTSFAADLTVMEE 278
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
EFI R+K+ ++ LP +S CP W+ YAE+ + L +SS KSPQQ G
Sbjct: 279 TAEFIERFKEGKK---------LPQFTSCCPAWVKYAEEYAQDF-LDNLSSCKSPQQMFG 328
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+ K Q LG P+++ V++MPC KK EA R +F+ +P+VD
Sbjct: 329 SVAKRFYSQDLGIDPEDMVVVSIMPCTAKKFEAQRPEFITD-------------GVPDVD 375
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT EV +I+ + F L LD L G ++GV +GG +E V R+A +
Sbjct: 376 VVITTQEVASMIKKSGLVFSELGIESLDMPLGFSTGAGVIFGV---TGGVSEAVLRNAYE 432
Query: 254 TLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ G ++ +EFK +R D +E +E++GKT ++ A+ +G N+ ++++ +K + +Y
Sbjct: 433 KITGDNLD-DVEFKEVRGFDGIKEAEVELDGKT-VRLAVVHGLSNVGDLIKAIKKGEKEY 490
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYD 370
+EVMACP GC+ GGGQ P + + K + +Y + + L +NP+V Y
Sbjct: 491 DLIEVMACPGGCIGGGGQPTPNNTEVRE---KRAQGMYNCDKLSALHKSQENPMVNDFYR 547
Query: 371 EWLEQPGSEKAKKHVHTEYH 390
W + S+ KH+HT Y
Sbjct: 548 RWFGEENSDVTHKHLHTSYE 567
>gi|376260107|ref|YP_005146827.1| hydrogenase, Fe-only [Clostridium sp. BNL1100]
gi|373944101|gb|AEY65022.1| hydrogenase, Fe-only [Clostridium sp. BNL1100]
Length = 574
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 127/378 (33%), Positives = 192/378 (50%), Gaps = 39/378 (10%)
Query: 20 VIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
V++ +P R +L E FG +P V K+ T L+ LG +FDT+ S DLT+IE NE I
Sbjct: 225 VVVQTAPAVRVALGEEFGFAPGTNVEGKMVTALRRLGFNKVFDTNFSADLTIIEEGNELI 284
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R K + LP+++S PGWI Y E +I +SS KSPQQ GA K
Sbjct: 285 DRIK---------NGGKLPLITSCSPGWIKYCEHNYHDFI-ENLSSCKSPQQMFGAIAKS 334
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ K P ++ V+VMPC KK EA RE+ +GL+ ++D+V+TT
Sbjct: 335 YYPVKADVDPKSVFVVSVMPCTAKKYEADREEMSV-----------DGLK--DIDAVITT 381
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ +I+ + F LE S D +L G ++G ++GG E R A L GK
Sbjct: 382 RELAKMIRQAGIKFAELENSKQDSILGTYSGAGTIFG---NTGGVMEAALRTVADKLTGK 438
Query: 259 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
++ +E+ +R D +E + + +K A+ G N ++ K++ + +Y F+EV
Sbjct: 439 SLD-CIEYTAVRGLDGIKEATVNI-ADMEIKVAVANGTGNASKLLDKIRAGEANYHFIEV 496
Query: 318 MACPSGCLNGGGQ--IKPKPGQSPKELIKTLETIYLENVMLA----DPFKNPLVRSLYDE 371
M C GC+NGGGQ IK K S + +KT L ++ + +NP ++ LY E
Sbjct: 497 MGCEGGCINGGGQPIIKDK---STTDAVKTARIKGLYDIDASCEKRKSHENPEIQKLYSE 553
Query: 372 WLEQPGSEKAKKHVHTEY 389
+L + G KA K +HT Y
Sbjct: 554 YLGEAGGHKAHKLLHTHY 571
>gi|187438956|gb|ACD10930.1| [FeFe]-hydrogenase [Blastocystis sp. NandII]
Length = 758
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 125/396 (31%), Positives = 204/396 (51%), Gaps = 36/396 (9%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSI 59
++E+ + + GK +++ +P +R + E+FG P ++ K+ K+LG + +
Sbjct: 215 IVEQSHIPRVKQAMKAGKVMVMQTAPATRVAFGENFGREPGEITTGKMIACAKALGFQYV 274
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
FDT+ D+T++E E + R K +N PM +S CPGW+ AEK IL
Sbjct: 275 FDTNFGADMTIMEEGTELLERIK---------NNGPFPMFTSCCPGWVNMAEKCY-PEIL 324
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
P +SS +SP +G+T+K + +K+ +P++IY V++MPC KK E R++
Sbjct: 325 PNLSSCRSPHMMVGSTLKTYWAKKMNLKPEDIYVVSLMPCTAKKDEIERKNM-------- 376
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAV-NFEALEESPLDKMLTNVDDEGHLYGVAG 238
+ DE + P VD+VLTT E+ D + + + N++ + E P D L G ++GV
Sbjct: 377 --WLDE--KTPFVDAVLTTKELGDFCKQEGITNWDNMAEMPFDTPLGTSSGAGDIFGV-- 430
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNL 298
SGG E R A + GK +E + + + ++++ GK + + F
Sbjct: 431 -SGGVMEAALRTAYQLQTGKPLEKIVVDEARGLDGTKRFSVDMNGKKINCAVVHSKFA-- 487
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI-KTLETIYLENV--M 355
+ +V VK K D QFVE MACP GC++GGGQ P + + I K + IY +
Sbjct: 488 RELVENVKAGKEDLQFVEAMACPGGCISGGGQ----PHSNRADTIEKRMNAIYKIDAGKT 543
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
L NP +++LY E+ E+P S KA + +HT Y P
Sbjct: 544 LRRSMDNPEIQTLYKEFFEKPNSHKAHELLHTTYAP 579
>gi|312144095|ref|YP_003995541.1| hydrogenase, Fe-only [Halanaerobium hydrogeniformans]
gi|311904746|gb|ADQ15187.1| hydrogenase, Fe-only [Halanaerobium hydrogeniformans]
Length = 570
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 127/380 (33%), Positives = 202/380 (53%), Gaps = 42/380 (11%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N+ K VI+ +P R +++E F ++ +L LK LG ++FDT+ + DLT++E
Sbjct: 223 NENKHVIVQTAPAVRVAISEPFSAKAGEISTGQLVAALKRLGFDAVFDTNFAADLTIMEE 282
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
E I R + +LP+ +S PGWI + E Y L +SS KSPQQ G
Sbjct: 283 GTELINRINNKE---------TLPLFTSCSPGWIKFIEHFYPQY-LSNLSSAKSPQQMFG 332
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K++ +K G PD++ V+VMPC KK EA R++ +VD
Sbjct: 333 AVAKNYYAEKAGIDPDDLVVVSVMPCTAKKFEAKRKEMG-----------------SDVD 375
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
VLTT E+ LI+ ++F +EE DK+L ++ GS+GG E R A +
Sbjct: 376 YVLTTRELSGLIKAAGIDFLNIEEKEYDKLLGVSSGAADIF---GSTGGVMEAALRTAYE 432
Query: 254 TLFGKVIEGHLEFKTIR-NSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ K +E ++F+ +R + ++ ++ +EG LK A+ +G N I++ + + ++
Sbjct: 433 LITEKELE-KIDFEVLRGDQGIKKASVNIEGFE-LKVAVVHGLNNAHKIMKMIDEGE-EF 489
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELI-KTLETIYL--ENVMLADPFKNPLVRSLY 369
FVE MACP GCLNGGGQ P ++++ K + IY +N L +NP ++ LY
Sbjct: 490 HFVEFMACPGGCLNGGGQ----PISYDEDVVEKRRKAIYQIDKNKKLRKSHENPYIKKLY 545
Query: 370 DEWLEQPGSEKAKKHVHTEY 389
+E+L++PGSE A + +HTEY
Sbjct: 546 EEYLDKPGSELAHRLLHTEY 565
>gi|50545922|ref|XP_500499.1| YALI0B04532p [Yarrowia lipolytica]
gi|74635710|sp|Q6CFR3.1|NAR1_YARLI RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|49646365|emb|CAG82726.1| YALI0B04532p [Yarrowia lipolytica CLIB122]
Length = 491
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 127/368 (34%), Positives = 189/368 (51%), Gaps = 68/368 (18%)
Query: 21 IISLSPQSRASLAEHFGISPLQVFKKL-TTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
+ S+S Q+RAS A FG+S KL + L +LG + R+++LI + E
Sbjct: 107 VCSVSHQARASFAAAFGVSVEVADAKLHSLLLDTLGFDYVVGMGVGREISLIHSAQEV-- 164
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
E+S P+++++CPGW+CY EK +++PY+SSVKSPQQ G+ +K
Sbjct: 165 ----------EKSTQK-PVMAASCPGWVCYVEKT-HPHVIPYLSSVKSPQQICGSLLKKV 212
Query: 140 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
IC +P ++YHV+VMPC+DKKLEA+R++F + QEE RD VD V+TT
Sbjct: 213 ICDTRRVKPSQVYHVSVMPCFDKKLEASRDEFSVEEAGQEEKIRD-------VDCVITTK 265
Query: 200 EVLDLIQLKAVNFEALEESPLDKMLTNV--------DDEGHLYGVAGSSGGYAETVFRHA 251
EV+ L+ K ++F L E ++ T+V D H V SSGGY H
Sbjct: 266 EVVQLLTEKDMSFGGLPEIDKSRLYTSVPETWPAERDWANH---VGSSSGGY----LHHV 318
Query: 252 AKTLFGKVIEGHLEFKTI------RNSDFREVA-LEVE-GKTLLKFALCYGFQNLQNIVR 303
L ++ LE +T +N D E + ++ E G+T+ A YGF+N+QN+VR
Sbjct: 319 LTAL--RLRHDPLETRTRVDASMGKNQDVMEYSVIDTETGETVASAAQVYGFRNIQNLVR 376
Query: 304 KVK---------------------MRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 342
K+K + Y ++EVMACP GC+NGGGQ+ G + +E
Sbjct: 377 KLKPSRGKGKVVSARKSTKTVSAALNPSTYSYIEVMACPGGCINGGGQVGAPEGVAAREW 436
Query: 343 IKTLETIY 350
E +Y
Sbjct: 437 KDETEKMY 444
>gi|326204155|ref|ZP_08194015.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
gi|325985666|gb|EGD46502.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
Length = 574
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 127/378 (33%), Positives = 192/378 (50%), Gaps = 39/378 (10%)
Query: 20 VIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
V++ +P R +L E FG +P V K+ T L+ LG +FDT+ S DLT+IE NE I
Sbjct: 225 VVVQTAPAVRVALGEEFGFAPGTNVEGKMVTALRRLGFNKVFDTNFSADLTIIEEGNELI 284
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R + + LPM++S PGWI + E +I +SS KSPQQ GA K
Sbjct: 285 ERIQ---------NGGKLPMITSCSPGWIKFCEHNYHDFI-ENLSSCKSPQQMFGAIAKS 334
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ K P ++ V+VMPC KK EA RE+ +GL+ ++D+V+TT
Sbjct: 335 YYPVKADVDPKSMFVVSVMPCTAKKYEADREEMSV-----------DGLK--DIDAVITT 381
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ +I+ + F LE+S D +L G ++G ++GG E R A L GK
Sbjct: 382 RELAKMIRQAGIKFAELEDSKQDSILGTYSGAGTIFG---NTGGVMEAALRTVADKLTGK 438
Query: 259 VIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
++ +++ +R RE + + +K A+ G N ++ K++ + +Y F+EV
Sbjct: 439 SLD-CIDYTAVRGLEGIREATVNI-ADMEIKVAVANGTGNASKLLDKIRAGEANYHFIEV 496
Query: 318 MACPSGCLNGGGQ--IKPKPGQSPKELIKTLETIYLENVMLA----DPFKNPLVRSLYDE 371
M C GC+NGGGQ IK K S E +KT L N+ + +NP ++ LY E
Sbjct: 497 MGCEGGCINGGGQPIIKDK---STTEAVKTARIKGLYNIDASCEKRKSHENPEIQKLYSE 553
Query: 372 WLEQPGSEKAKKHVHTEY 389
+L + G KA K +HT Y
Sbjct: 554 YLGEAGGHKAHKLLHTHY 571
>gi|187779552|ref|ZP_02996025.1| hypothetical protein CLOSPO_03148 [Clostridium sporogenes ATCC
15579]
gi|187773177|gb|EDU36979.1| hydrogenase, Fe-only [Clostridium sporogenes ATCC 15579]
Length = 577
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 128/382 (33%), Positives = 195/382 (51%), Gaps = 40/382 (10%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K VI+ +P RA+L E FG+ P V K+ L+ LG +FDT + DLT++E
Sbjct: 227 KDKVVIVQTAPAIRAALGEEFGLEPGTTVTGKMVAALRQLGFSKVFDTDFAADLTIMEEA 286
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
+EFI R + +LPML+S CPGWI + E ++ SS KSPQQ GA
Sbjct: 287 SEFIHRLEHG---------GTLPMLTSCCPGWIKFFEHNFND-LMDIPSSCKSPQQMFGA 336
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
K ++ +K+ P +I V+VMPC KK EA RE+ + G IP+VD
Sbjct: 337 IAKSYLAEKMKVDPKDIIVVSVMPCLAKKYEAKREEM-----------KRNG--IPDVDI 383
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V++T E+ +I ++F +L+E D L ++ G++GG E R T
Sbjct: 384 VISTRELAKMIVEAGIDFNSLQEEEFDNPLGESTGASVIF---GTTGGVMEAALR----T 436
Query: 255 LFGKVIEGHL---EFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
+ V +G L EF +R + RE + ++ +K A+ G N + ++ ++ K
Sbjct: 437 AYEWVTKGTLKDVEFIEVRGEEGIREATVNIK-DIEVKVAIASGLGNARKLLNDIRNGKS 495
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSL 368
Y +E+MACPSGC++GGGQ P L K E +Y E N + +N ++ L
Sbjct: 496 KYHMIEIMACPSGCVDGGGQ--PYIYGDTNILKKRTEALYKEDSNKEIRKSHENLYIKKL 553
Query: 369 YDEWLEQPGSEKAKKHVHTEYH 390
Y+E+L +P EKA + +HT+Y
Sbjct: 554 YEEYLGKPYGEKAHELLHTKYR 575
>gi|227499382|ref|ZP_03929493.1| ferredoxin hydrogenase [Anaerococcus tetradius ATCC 35098]
gi|227218586|gb|EEI83826.1| ferredoxin hydrogenase [Anaerococcus tetradius ATCC 35098]
Length = 577
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 135/394 (34%), Positives = 210/394 (53%), Gaps = 36/394 (9%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSI 59
+ EK ++ E + K VI+ ++P R SLAE FG+ L V K+ LK+LG +
Sbjct: 209 LTEKNNVAEVWKLLASDKHVIVQVAPAVRVSLAEMFGMEVGLNVEGKIVRALKTLGFSKV 268
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI- 118
FDT+ + DLT++E NEFI R K LP+L+S CP W+ + E+Q I
Sbjct: 269 FDTNFAADLTIMEEANEFIHRLK---------GEGRLPILTSCCPAWVNFMEQQFSDMID 319
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+P SS KSP + GA K + +K G P +I V+VMPC KK EA R++ +
Sbjct: 320 IP--SSCKSPHEMFGAIAKSYYAKKEGIDPKDIVVVSVMPCISKKYEAKRDEL------E 371
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
E + D VD+V+TT E+ +I+ ++F +LE+ D + G ++G
Sbjct: 372 NEGFSD-------VDTVITTRELAQMIKEVGIDFASLEDQAFDNPMGESTGAGDIFG--- 421
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
+SGG E R A L GK +E +EF+ R + + +++++G+ + K A+ G N
Sbjct: 422 TSGGVIEATVRTAYDMLTGKELE-KVEFRDFRGLEGIKYASVDIDGREI-KIAVANGLGN 479
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVM 355
+ ++ K+K ++ D +EVMACP GC+ GGGQ P L + +Y E+
Sbjct: 480 TRKLLEKLKNKEIDLDAIEVMACPGGCIGGGGQ--PFHHGDLSILKRRSNALYQLDESKK 537
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L ++NP ++ LYDE+L +PGS+KA +HT Y
Sbjct: 538 LRKSYQNPYIKKLYDEFLGEPGSDKAISLLHTSY 571
>gi|404370031|ref|ZP_10975358.1| hydrogenase, Fe-only [Clostridium sp. 7_2_43FAA]
gi|226913838|gb|EEH99039.1| hydrogenase, Fe-only [Clostridium sp. 7_2_43FAA]
Length = 575
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 205/382 (53%), Gaps = 33/382 (8%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+ K V++ ++P R++LAE FG+ ++ K+ T LK L S+FDT+ + DLT++E
Sbjct: 223 DNNKYVVVQIAPAVRSALAEEFGLESGELSTGKIVTALKLLSFDSVFDTNFAADLTIMEE 282
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
NEFI R+ + +LP+++S CP WI Y+E L +SS KSPQQ G
Sbjct: 283 ANEFIERFTLGE---------NLPLITSCCPAWINYSESNYYDN-LNLVSSCKSPQQMFG 332
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K+++ Q+L + + + V++MPC KK EA R++ +D I +VD
Sbjct: 333 AIAKNYLPQELSIKRENLAVVSIMPCIAKKHEANRKEMQ-DIDG-----------IKDVD 380
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E+ +I+ ++ L +S D L G ++ G+SGG E R A +
Sbjct: 381 LVITTRELAKIIKEAGIDIVNLHDSEFDNPLGMSSGAGTIF---GTSGGVMEAALRTAYE 437
Query: 254 TLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ GK +E ++F+ +R + +E +++ GK + A+ N + I+ ++K Y
Sbjct: 438 WITGKELE-KIDFENVRGLEGIKEAKVDLNGKE-VNVAVVSSLGNAKKIMDEIKYGNSKY 495
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYD 370
F+EVMACP GC++GGGQ P + L K + +IY E N ++ +NP+++ LY
Sbjct: 496 HFIEVMACPGGCIDGGGQ--PFIKSNRDVLKKRMNSIYNEDKNKVIRKSHENPMIQKLYK 553
Query: 371 EWLEQPGSEKAKKHVHTEYHPV 392
++L++P S A +H Y +
Sbjct: 554 DYLQKPNSYIAHHILHVNYKRI 575
>gi|397689636|ref|YP_006526890.1| Fe-only hydrogenase, catalytic subunit alpha [Melioribacter roseus
P3M]
gi|395811128|gb|AFN73877.1| Fe-only hydrogenase, catalytic subunit alpha [Melioribacter roseus
P3M]
Length = 672
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 128/380 (33%), Positives = 197/380 (51%), Gaps = 35/380 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N K V+ ++P R ++ E FG P + ++ LK +G +FDTS + DLT+IE
Sbjct: 220 NPDKVVVAQIAPAVRVAIGELFGFKPGALLTGQIVNALKMIGFDKVFDTSFAADLTVIEE 279
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
NEFI R ++ + LP+ +S CPGW+ + E ++ +SS KSPQQ G
Sbjct: 280 ANEFIQRKQE---------DYKLPLFTSCCPGWVKFVE-YYHPELITNLSSCKSPQQMFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+ K + + L + + + V++MPC KK EA R +F + G I EVD
Sbjct: 330 SVAKEILPELLNIKKENLAVVSIMPCTAKKAEAKRPEF------------NHG-GIKEVD 376
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
VLTT E+ +I+ + FE L PLD + G ++G +SGG +E V R+A +
Sbjct: 377 YVLTTVELAAMIKEAGIKFENLTPEPLDMPMGFKSGAGVIFG---NSGGVSEAVARYAYE 433
Query: 254 TLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
L G+ + EFK +R SD R LE+ G T ++ A+ G +N +++K+K ++ +Y
Sbjct: 434 KLTGQKL-FDFEFKQLRGSDALRTAELELNG-TKIRMAIVSGLKNASELIKKLKNKEAEY 491
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLYD 370
+EVMACP GC+ G GQ P +S + K +Y + + L NP V LY
Sbjct: 492 DIIEVMACPGGCIAGAGQ--PYTTESDNKC-KRASALYESDKTLQLHKSQDNPYVSELYS 548
Query: 371 EWLEQPGSEKAKKHVHTEYH 390
L +P S KA +HT+Y+
Sbjct: 549 SLLGEPNSRKAHSLLHTKYY 568
>gi|118443000|ref|YP_877778.1| hydrogenase (Fe) large chain [Clostridium novyi NT]
gi|118133456|gb|ABK60500.1| hydrogenase (Fe) large chain [Clostridium novyi NT]
Length = 443
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 126/378 (33%), Positives = 193/378 (51%), Gaps = 34/378 (8%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K VI ++P RA+L E+FG+ P V K+ L+++G +FDT + DLT++E
Sbjct: 94 KDKLVITQVAPAIRATLGEYFGLEPGTLVTGKMVAALRAIGFDKVFDTDFAADLTIMEEA 153
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
EF R K LP+L+S CPGWI + E + SS KSPQQ G
Sbjct: 154 TEFAHRLKHG---------GKLPILTSCCPGWINFFEHDFRD-LADIPSSCKSPQQMFGT 203
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
K + QK+ P +I V++MPC KK EAAR + + RD VD
Sbjct: 204 IAKTYFAQKMNIEPKDIIVVSIMPCLAKKYEAARPEMT------TDGTRD-------VDI 250
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V++T E+ +LI+ ++F +LE+ DK L G ++ G+SGG AE R A +
Sbjct: 251 VISTQELAELIKENNIDFNSLEDDDFDKPLGESSGAGTIF---GTSGGVAEAAIRTAYEL 307
Query: 255 LFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
+ + I LEFK +R + +E +E+ G+ +K A+ G + ++ ++ + +Y
Sbjct: 308 ITNETIPA-LEFKGVRGLNGLKEAEVEINGEK-IKIAIANGLATARELLNSIRNGEKNYH 365
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV--MLADPFKNPLVRSLYDE 371
+E+MAC GC+ G Q P + K E +Y E+ L +NP V +Y+E
Sbjct: 366 LIEIMACQGGCIGSGMQ--PFIKNHCNIIQKRSEALYSEDRHKTLRKSHENPYVLKIYEE 423
Query: 372 WLEQPGSEKAKKHVHTEY 389
+L +P EKA K++HTEY
Sbjct: 424 FLGEPYGEKAHKYLHTEY 441
>gi|326201392|ref|ZP_08191264.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
gi|325988960|gb|EGD49784.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
Length = 583
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 195/376 (51%), Gaps = 34/376 (9%)
Query: 20 VIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
V++ +P R +L E FG+ P+ +V K+ L +G +FDT + DLT++E E
Sbjct: 226 VVVQTAPAVRVALGEEFGL-PIGTRVTGKMVAALNHMGFAKVFDTDTAADLTIMEEGTEL 284
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R K + LP+++S PGWI + E + L +SS KSP Q GA +K
Sbjct: 285 LNRIK---------NGGKLPVITSCSPGWIKFCEHNYPEF-LENLSSCKSPHQMFGAVLK 334
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+ +K+G +I+ V+VMPC KK EA R + +P+VD V+T
Sbjct: 335 TYYAEKMGIDVKKIFVVSVMPCTAKKFEAQRPEL-------------SATGLPDVDVVIT 381
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
T E+ +I+ ++F LE+ D + N G ++G ++GG E R ++ + G
Sbjct: 382 TRELARMIKESGIDFNNLEDKDFDDPMGNATGAGVIFG---ATGGVMEAALRTVSEIVAG 438
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
K + +E+ +R + + A G +K A+ G + + ++ +K + Y FVE+
Sbjct: 439 KSFD-DIEYAAVRGIEGIKEATVAIGDMKVKAAVANGLGSARKLLDSIKAGEASYDFVEI 497
Query: 318 MACPSGCLNGGGQ-IKPKPGQSPKEL-IKTLETIYLENVMLA--DPFKNPLVRSLYDEWL 373
MACP GC+NGGGQ I+P +S +L + + IY E+ L +NP+++ +YD++
Sbjct: 498 MACPGGCVNGGGQPIQPSSVRSWTDLRAERAKAIYEEDASLPIRKSHENPVIKEMYDKYF 557
Query: 374 EQPGSEKAKKHVHTEY 389
+PGS KA + +HT Y
Sbjct: 558 GKPGSHKAHEVLHTHY 573
>gi|302389352|ref|YP_003825173.1| hydrogenase, Fe-only [Thermosediminibacter oceani DSM 16646]
gi|302199980|gb|ADL07550.1| hydrogenase, Fe-only [Thermosediminibacter oceani DSM 16646]
Length = 426
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 117/372 (31%), Positives = 192/372 (51%), Gaps = 33/372 (8%)
Query: 21 IISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
++ +P R +L E FG+ P + ++ + + +G ++DT + DLT++E +EF+
Sbjct: 77 VVQSAPAMRVTLGEEFGMEPGTIVPGRMASAFRKMGFDRVYDTCFAADLTVMEEGHEFLE 136
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
R ++ PM +S CP W+ + EK ++ ++SS KSPQQ GA +K +
Sbjct: 137 RMEK---------GGPFPMFTSCCPAWVFFMEKNYPD-LVHHLSSCKSPQQMFGAVVKAY 186
Query: 140 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
+ +K G P I+ ++ MPC KK EAAR + RD VD+VLTT
Sbjct: 187 MAEKEGIDPARIFMLSAMPCTAKKFEAARSEM------NSSGARD-------VDAVLTTR 233
Query: 200 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV 259
E+ LI+ + + L E D G L+G +SGG E R AK L GK
Sbjct: 234 ELAQLIKDRQLELADLPEEDFDIPFGEYTGAGALFG---TSGGVMEAALRTVAKKLTGKP 290
Query: 260 IEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVM 318
++ + F+ +R FRE +++ G +K A+ +G +N+ ++ +++ DY F+EVM
Sbjct: 291 LK-SIAFEPLRKGGAFREAVIDI-GNKKVKIAVVHGLKNIIPVLEEIRKGNSDYHFIEVM 348
Query: 319 ACPSGCLNGGGQIK-PKPGQSPKELIKTLETIYLENVMLA--DPFKNPLVRSLYDEWLEQ 375
CP GC+ GGGQ + PK K + K E +Y + L + NP +++LY E+L +
Sbjct: 349 TCPDGCIGGGGQPRIPKRSLRQKTVRKRKEALYFYELGLPKIEAGDNPSIKALYAEFLGR 408
Query: 376 PGSEKAKKHVHT 387
P SEK+ + +H
Sbjct: 409 PLSEKSHELLHV 420
>gi|19548180|gb|AAL90459.1|AF446076_1 [Fe]-hydrogenase, partial [Piromyces sp. E2]
Length = 555
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 143/410 (34%), Positives = 214/410 (52%), Gaps = 48/410 (11%)
Query: 1 MLEKQSLDEFLSNIN-KGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ E+ E L +++ K K V++S +P R +LAE F P K+ LK LG
Sbjct: 172 ITERNECIEVLRHLDTKRKIVVVSTAPAIRVALAEEFNAEPDFDFTGKMVAGLKKLGFDY 231
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY- 117
IFDT+ S DLT++E E I R + PM +S CPGWI EK SY
Sbjct: 232 IFDTNFSADLTIMEEGTELITRLNEG---------GKFPMFTSCCPGWINMVEK---SYP 279
Query: 118 -ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLD 176
I +SS KSPQQ IGA IK + +K+ +P++I HV+VMPC KK EA R +F
Sbjct: 280 EIRDNLSSCKSPQQMIGAVIKTYFAKKINAKPEDIIHVSVMPCTAKKGEAKRPEF----- 334
Query: 177 SQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGV 236
RD +P++D V+TT E++ L++LK +N L+ D L G+L+GV
Sbjct: 335 -----KRD---GVPDIDHVITTRELITLLKLKRINPSELKNEKFDSPLGIGSSAGNLFGV 386
Query: 237 AGSSGGYAETVFRHAAKTLFGKVIEGHL---EFKTIRNSD---FREVALEV-EGKTL-LK 288
+GG E R A+ + G +E + E K IR D V L+ +GK + ++
Sbjct: 387 ---TGGVMEAAVR-TAQIITG--VENPIPLGELKAIRGLDGIKAASVPLKTKDGKDVNVR 440
Query: 289 FALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLET 348
A+ G N+Q + K+K ++ ++ FVE+M CP GC+NGGGQ K PK + K +E
Sbjct: 441 AAVVSGGANIQKFLEKLKKKELEFDFVEMMMCPGGCINGGGQPK---SADPKVVAKKMER 497
Query: 349 IYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSI 396
+Y + L +NP + +Y E+L++P + + +HT Y+ K+I
Sbjct: 498 MYTMDDQASLRLSHENPEITQIYKEFLKEPNGHLSHELLHTHYNDRSKAI 547
>gi|302391022|ref|YP_003826842.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Acetohalobium arabaticum DSM 5501]
gi|302203099|gb|ADL11777.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Acetohalobium arabaticum DSM 5501]
Length = 571
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 135/394 (34%), Positives = 210/394 (53%), Gaps = 50/394 (12%)
Query: 7 LDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSC 64
++E +S + + K V++ +P R +L E F + S + K+ T +K +G +FDT+
Sbjct: 214 INEVISALHDPDKHVVVQTAPAVRVALGEEFDMESGINTEGKMVTAMKKMGFDKVFDTNF 273
Query: 65 SRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
+ DLT++E EFI R K ++ LP+++S PGWI +AE S +L ISS
Sbjct: 274 TADLTIMEEGFEFIDRLK---------NDGPLPLITSCSPGWIKFAEHNY-SDLLDNISS 323
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
KSPQQ GA K +K+ P ++ V++MPC KK EA RE+ + Y+D
Sbjct: 324 CKSPQQMFGALTKSFYPEKVDVDPADVVSVSIMPCTAKKFEAEREEMT------DTGYQD 377
Query: 185 EGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA---GSSG 241
VD VLTT E+ ++I+ +NF L+E D D G G A G++G
Sbjct: 378 -------VDHVLTTRELAEMIKEYGLNFVNLKEEEYD------DPFGISTGAAVIFGATG 424
Query: 242 GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQN 300
G E R A + L + + G+++ + +R + +E +++ G+T +K A+ G +N
Sbjct: 425 GVMEAALRTAYEVLTEEEL-GNVDLEMVRGFEGIKEAEVDINGQT-VKVAVASGLENAHQ 482
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
+++ K DY F+E+MACP GCLNGGGQ P S L K E +Y N F
Sbjct: 483 LLK----HKDDYHFIEIMACPGGCLNGGGQ--PISNDSDV-LEKRREGLY--NTDKEREF 533
Query: 361 K----NPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
+ NP ++ LYD++LE+P SE + K++HT YH
Sbjct: 534 RKSHENPAIQKLYDDYLEEPLSEVSHKYLHTHYH 567
>gi|169608145|ref|XP_001797492.1| hypothetical protein SNOG_07139 [Phaeosphaeria nodorum SN15]
gi|121920428|sp|Q0UM75.1|NAR1_PHANO RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|111064670|gb|EAT85790.1| hypothetical protein SNOG_07139 [Phaeosphaeria nodorum SN15]
Length = 632
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 127/378 (33%), Positives = 184/378 (48%), Gaps = 72/378 (19%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS----------IFDTS 63
++GK + S+SPQSRAS+A F +S + + L G+K+ + DT+
Sbjct: 133 HEGKLFVASVSPQSRASIAAVFNVSEAEAGNMIAQLLSGPSGLKTGGHQGSDFTWVLDTN 192
Query: 64 CSRDLTLIEACNEFIARY--KQSQESDDERSNSSL------PMLSSACPGWICYAEKQLG 115
R+ L+ A +E + S S S ++ P+L+SACPGWICYAEK
Sbjct: 193 VVREACLVAAADEVANALSPETSNPSTKPGSEGAIDTTPKQPILTSACPGWICYAEKTH- 251
Query: 116 SYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL 175
YILP++S +KSPQ G IK + Q+ P +I+HV +MPC+DKKLEA+R +
Sbjct: 252 PYILPHLSRLKSPQALTGTLIKSVLSQQYNIPPSQIWHVAIMPCFDKKLEASRSELTSSA 311
Query: 176 -----DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP----------- 219
D+ ++ RD VD V+T E+L L + +NF +L +P
Sbjct: 312 WLPNHDATQDPVRD-------VDCVITARELLHLASARGINFASLPRTPLSASERTPFPD 364
Query: 220 --LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREV 277
LD L + VAGSSGGY H +T + + RN+D E
Sbjct: 365 PKLDAFLFPHTRRKNQDVVAGSSGGY----LYHILQTYQAQNPGSSISVSRGRNADVVEY 420
Query: 278 ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-----------------------DYQF 314
+L +T+++ A YGF+N+QN+VR++K K DY +
Sbjct: 421 SLVRGSETIIRAARFYGFRNIQNLVRRLKPAKASRLPGGKTGVSRKPGAAAGGDVKDYAY 480
Query: 315 VEVMACPSGCLNGGGQIK 332
VEVMACP GC NGGGQ+K
Sbjct: 481 VEVMACPGGCTNGGGQVK 498
>gi|291557757|emb|CBL34874.1| hydrogenases, Fe-only [Eubacterium siraeum V10Sc8a]
Length = 583
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 191/380 (50%), Gaps = 37/380 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGI---SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K V++ +P RASL E FG +P++ K+ L+ LG ++FDT+ DLT++E
Sbjct: 226 KVVVVQTAPAVRASLGEAFGYPMGTPVE--GKMVAALRRLGFNAVFDTNFGADLTIMEES 283
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
+EF+ R + LPM++S PGWI + E +I P +SS KSPQQ GA
Sbjct: 284 HEFLDRVT---------NGGVLPMITSCSPGWIRFCEAYFPEFI-PNLSSCKSPQQMNGA 333
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
K + +K+G P I V+VMPC KK E RED +P+VD
Sbjct: 334 ITKTYWAKKMGIDPKNIVSVSVMPCTAKKFEIGRED-------------QSAAGVPDVDI 380
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
+TT E++ +I + F L + D L N ++G ++GG E R A
Sbjct: 381 SITTRELVKMINRAGLRFRDLPDEVADSPLGNGTGAAVIFG---ATGGVMEAALRTAVWK 437
Query: 255 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
L G+ + +EFK +R + + A G +K A+ G N + + KVK + + F
Sbjct: 438 LTGEAADSPVEFKDVRGVEGIKTAEYKVGDLTVKVAVVSGLANAKKFLTKVKNGEVECHF 497
Query: 315 VEVMACPSGCLNGGGQ-IKPKPGQS----PKELIKTLETIYLENVMLADPFKNPLVRSLY 369
+E+MACP GC+NGGGQ I+P ++ E K L ++ N L ++P V+ +Y
Sbjct: 498 IEIMACPGGCVNGGGQVIQPADVRNFTDIRAERAKALYSLDDAN-KLRKSHESPDVKEVY 556
Query: 370 DEWLEQPGSEKAKKHVHTEY 389
+ +L +PGS A + +HT Y
Sbjct: 557 ENFLGEPGSHIAHEILHTSY 576
>gi|46107184|ref|XP_380651.1| hypothetical protein FG00475.1 [Gibberella zeae PH-1]
Length = 577
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 118/357 (33%), Positives = 185/357 (51%), Gaps = 52/357 (14%)
Query: 18 KAVIISLSPQSRASLAEH--FGISPLQVFKKLTTFLKSL-GVKS----------IFDTSC 64
K ++S+SPQ+RA+LA G+S QV L + GV S + DT+
Sbjct: 120 KLFVVSVSPQTRANLAAACGAGVSEAQVGHMLDNLFRGPEGVASGGKYNNEFAWVVDTNT 179
Query: 65 SRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
+R+ TL+ +E + S + + P+L+S+CPGW+CYAEK ++LP+IS
Sbjct: 180 AREATLVLGADEVL------NPSQSTPATPAKPILASSCPGWVCYAEKTH-PHVLPHISK 232
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
VKSPQ +G +K + + LG P I+H+ +MPC+DKKLEA+RE+ ++ ++ E
Sbjct: 233 VKSPQALMGTLLKTTLSRTLGIAPSRIWHLAIMPCFDKKLEASREELTEEVWAEGEI--- 289
Query: 185 EGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGH-------LYGVA 237
G + +VD V+T+ E+L L + + +NF + ++PL K D + H L G +
Sbjct: 290 RGRGVRDVDCVITSKEILMLAESRGLNFFNVPKTPLSKSNPFPDPKLHDFLFPRRLPGNS 349
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQN 297
G + + H K+ + + RN D E ++ V G+ + + A YGF+N
Sbjct: 350 PREAGTSGGLLWHILKSRAAQTPGAEIVHTRGRNVDVAEYSIVVNGEPVFRAARYYGFRN 409
Query: 298 LQNIVRKVKMRK----------------------CDYQFVEVMACPSGCLNGGGQIK 332
+QN+VR++K K +Y +VEVMACP GC NGGGQIK
Sbjct: 410 IQNLVRRLKPAKPSRMPGGKPFGSARKPAGKAGSLEYSYVEVMACPGGCTNGGGQIK 466
>gi|345017340|ref|YP_004819693.1| hydrogenase, Fe-only [Thermoanaerobacter wiegelii Rt8.B1]
gi|344032683|gb|AEM78409.1| hydrogenase, Fe-only [Thermoanaerobacter wiegelii Rt8.B1]
Length = 581
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 127/391 (32%), Positives = 206/391 (52%), Gaps = 47/391 (12%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K V+ +P R +L E FG+ P+ V K+ L+ +G ++FDT + DLT++E +
Sbjct: 224 KYVVAQTAPAVRVALGEEFGM-PIGSIVTGKMVAALRRMGFDAVFDTDFAADLTIMEEGS 282
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
E + R K + LPM++S PGWI + EK +I +S+ KSP +GA
Sbjct: 283 ELLERLK---------NGGKLPMITSCSPGWIAFCEKYYPEFI-DNLSTCKSPHMMMGAL 332
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+K + +K G P++IY V++MPC KKLE R + Q + +D VD+V
Sbjct: 333 VKSYYAEKKGLNPEDIYVVSIMPCTAKKLEIERPEM------QHKGIKD-------VDAV 379
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
LTT E+ +I+ ++F L++ D+ L G ++G ++GG E R A +
Sbjct: 380 LTTRELARMIKEMGIDFVNLKDEEYDEPLGMSTGAGVIFG---ATGGVMEAALRTVADIV 436
Query: 256 FGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
GK ++ +++ +R + RE + ++G + K A+ G N + ++ KVK + +Y F
Sbjct: 437 EGKDLD-KFDYEEVRGLEGVREATIRIDGMDI-KVAIANGTGNAKKLLDKVKAGEVEYHF 494
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE----TIYL--ENVMLADPFKNPLVRSL 368
+EVM CP GC+ GGGQ P +P E+ K E IY +N+ + KNP ++ L
Sbjct: 495 IEVMGCPGGCIMGGGQ----PIHNPNEMEKVKELRAKAIYEADKNLPIRKSHKNPAIQKL 550
Query: 369 YDEWLEQPGSEKAKKHVHTEY-----HPVVK 394
Y+E+L P SEK+ +HT Y +P+VK
Sbjct: 551 YEEFLGSPLSEKSHHLLHTHYSKKELYPLVK 581
>gi|325845872|ref|ZP_08169070.1| ferredoxin hydrogenase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481778|gb|EGC84810.1| ferredoxin hydrogenase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 577
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 133/393 (33%), Positives = 213/393 (54%), Gaps = 34/393 (8%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSI 59
+ EK ++ E + K +I+ ++P R +L E FG P + V ++ T L++LG +
Sbjct: 209 LTEKSNIKEIWKLLESDKHLIVQVAPAVRVALGEMFGRKPGESVEGEMVTALRNLGFDKV 268
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI- 118
FDT+ + DLT++E NEF+ R LP+L+S CPGW+ + E+Q I
Sbjct: 269 FDTNFAADLTIMEEANEFVQRLN---------GKGKLPILTSCCPGWVNFMEQQFSDLID 319
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+P SS KSP + GA K + +K+G +P++I V++MPC KK EA R++ +
Sbjct: 320 IP--SSCKSPHEMFGAIAKTYYAEKIGKKPEDIKVVSIMPCISKKYEAKRDEL------E 371
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
E Y D VD VLTT E+ +I+ ++F LE+S D + G ++ G
Sbjct: 372 NEGYSD-------VDIVLTTRELGAMIKEAGIDFNKLEKSDFDNPMGESTGAGDIF---G 421
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
+SGG E R A T+ G+ +E +EF+ +R ++ +++ G+ +K A+ G N
Sbjct: 422 TSGGVIEATIRTAYDTITGEELE-KVEFEDLRGLKGIKQAKVDINGRE-IKIAVANGLGN 479
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP-KELIKTLETIYLENVML 356
+ ++ K++ ++ D +EVMACP GC+ GGGQ S KE K L I +N L
Sbjct: 480 TRKLLEKLRNKEIDLDAIEVMACPGGCIGGGGQPYHNGKISILKERSKGLYQID-KNKKL 538
Query: 357 ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
++NP ++ LY E+L + GSEKAK+ +HT Y
Sbjct: 539 RKSYQNPYIKKLYQEYLGEVGSEKAKELLHTSY 571
>gi|167772589|ref|ZP_02444642.1| hypothetical protein ANACOL_03968 [Anaerotruncus colihominis DSM
17241]
gi|167665067|gb|EDS09197.1| hydrogenase, Fe-only [Anaerotruncus colihominis DSM 17241]
Length = 584
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 126/399 (31%), Positives = 202/399 (50%), Gaps = 39/399 (9%)
Query: 1 MLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKS 58
+ EK DE + +N K V++ +P RA+L E FG+ V K+ L+ +G +
Sbjct: 209 IYEKDQTDEVWAALNDPSKHVVVQTAPSIRATLGEAFGMPVGTNVTGKMVAALRRIGFEK 268
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + D+T++E +EF+ R K + LPM++S PGWI Y E +
Sbjct: 269 VFDTDLAADMTIVEEAHEFVERVK---------NGGVLPMITSCSPGWIKYCE-HYHPDM 318
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+P +S+ KSPQQ GAT+K +K+G+ +I V VMPC KK E R+D
Sbjct: 319 IPNLSTCKSPQQMFGATVKTWYAEKMGWDKKDIVVVGVMPCTAKKFEVRRDD-------- 370
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
E+ G IP+VD LTT E+ +I + F L + D + ++ G
Sbjct: 371 EDA---AGSGIPDVDIALTTREIARMIDRAGIQFTELPDEEFDSPMGESTGASVIF---G 424
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCYGFQN 297
++GG E R AA+ + GK +E +EF +R + +E + ++ G + A+ G N
Sbjct: 425 ATGGVMEAALRTAAEWVGGKPLE-QVEFTDVRGTAGVKEASYQI-GDLTVNVAVASGLAN 482
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLA 357
+ ++ +VK +Y F+E+M CP GC+NGGGQ P S + + L++I + + A
Sbjct: 483 AKKLLEQVKRGMKNYHFIEIMGCPGGCVNGGGQ--PVQPASVRNFVD-LKSIRAKALYDA 539
Query: 358 DPFK-------NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
D K NP + ++Y E+ + GS A + +HT Y
Sbjct: 540 DEAKTLRKSHENPALLTIYKEYFGEFGSHLAHRILHTSY 578
>gi|50953715|gb|AAT90438.1| plastid FeFe-hydrogenase precursor [Chlamydomonas moewusii]
Length = 458
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 122/395 (30%), Positives = 200/395 (50%), Gaps = 49/395 (12%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K ++S++P R +++E G++P V +L L+ LG +FDT+ + DLT++E E
Sbjct: 78 KLTVVSVAPAVRVAISEALGLAPGAVTPGQLVAGLRRLGFTKVFDTNLAADLTIMEEGTE 137
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY--ILPYISSVKSPQQTIGA 134
+ R E + +PM +S CPGWI EK SY ++PY+SS KSPQ +GA
Sbjct: 138 LLHRLADHLEGHP-KQEEPMPMFTSCCPGWIQMVEK---SYPELIPYLSSCKSPQMMMGA 193
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
IK+ ++ G +P +I +VMPC K+ EA R + + +VD
Sbjct: 194 VIKNFFAEEAGVKPGDIISCSVMPCVRKQGEADRPMMTTTAEGR------------DVDH 241
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V+TT E+ ++ + ++ +L + D L G L+ G++GG E R +
Sbjct: 242 VITTVELAQMLTERGIDLTSLPDEEFDCPLGIGSGGGQLF---GTTGGVMEAALRTVVEL 298
Query: 255 LFGKVIEGHLEFKTIR----------------NSDFREVALEVEGKTL-LKFALCYGFQN 297
+ G+ + G + F+ +R NS F + EGK L ++ A+ G N
Sbjct: 299 VSGQPM-GRIVFEDVRGLEGIKAATITLQPAANSPFAK--YNPEGKGLDVRIAVANGLGN 355
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI-KTLETIYL--ENV 354
+ ++ ++K Y F+EVMACPSGC+ GGGQ P + K+++ K + IY E
Sbjct: 356 AKKLITEMKAGTSKYDFIEVMACPSGCIGGGGQ----PRSADKQILQKRQQAIYTLDERA 411
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
++ +NP++ +LY WL++P SE A +HT Y
Sbjct: 412 VIRRSHENPIIAALYKRWLQEPCSETAHHLLHTHY 446
>gi|392940524|ref|ZP_10306168.1| hydrogenase, Fe-only [Thermoanaerobacter siderophilus SR4]
gi|392292274|gb|EIW00718.1| hydrogenase, Fe-only [Thermoanaerobacter siderophilus SR4]
Length = 581
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 127/391 (32%), Positives = 205/391 (52%), Gaps = 47/391 (12%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K V+ +P R +L E FG+ P+ V K+ L+ +G ++FDT + DLT++E +
Sbjct: 224 KYVVAQTAPAVRVALGEEFGM-PIGSIVTGKMVAALRRMGFDAVFDTDFAADLTIMEEGS 282
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
E + R K + LPM++S PGWI + EK +I +S+ KSP +GA
Sbjct: 283 ELLERLK---------NGGKLPMITSCSPGWIAFCEKYYPEFI-DNLSTCKSPHMMMGAL 332
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+K + +K G P++IY V++MPC KKLE R + Q +D VD+V
Sbjct: 333 VKSYYAEKKGLNPEDIYVVSIMPCTAKKLEIERPEM------QHNGIKD-------VDAV 379
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
LTT E+ +I+ ++F L++ D+ L G ++G ++GG E R A +
Sbjct: 380 LTTRELARMIKEMGIDFVNLKDEEYDEPLGMSTGAGVIFG---ATGGVMEAALRTVADIV 436
Query: 256 FGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
GK ++ +++ +R + RE + ++G + K A+ G N + ++ KVK + +Y F
Sbjct: 437 EGKDLD-KFDYEEVRGLEGVREATIRIDGMDI-KVAIANGTGNAKKLLDKVKAGEVEYHF 494
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE----TIYL--ENVMLADPFKNPLVRSL 368
+EVM CP GC+ GGGQ P +P E+ K E IY +N+ + KNP ++ L
Sbjct: 495 IEVMGCPGGCIMGGGQ----PIHNPNEMEKVKELRAKAIYEADKNLPIRKSHKNPAIQKL 550
Query: 369 YDEWLEQPGSEKAKKHVHTEY-----HPVVK 394
Y+E+L P SEK+ +HT Y +P+VK
Sbjct: 551 YEEFLGSPLSEKSHHLLHTHYSKKELYPLVK 581
>gi|325290297|ref|YP_004266478.1| hydrogenase, Fe-only [Syntrophobotulus glycolicus DSM 8271]
gi|324965698|gb|ADY56477.1| hydrogenase, Fe-only [Syntrophobotulus glycolicus DSM 8271]
Length = 525
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 123/408 (30%), Positives = 205/408 (50%), Gaps = 28/408 (6%)
Query: 1 MLEKQSLDEFLSNINKGK-AVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK +D+ L I + V++ +P +R L E FG+ P+ V K L+ LG
Sbjct: 130 ITEKDEIDKVLQAIEDPEITVVVQTAPATRVGLGEEFGM-PIGTNVEGKQVAALRKLGFD 188
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+IFDT+ + DLT++E E + R N P L+S CPGW+ + E
Sbjct: 189 TIFDTTFTADLTIMEEGTELVKRVTGEL-------NKPTPQLTSCCPGWVKFVE-YFYPD 240
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
++P +SS KSPQQ GA IK + + P++I+ V++MPC KK EA R +F S
Sbjct: 241 LIPNLSSAKSPQQMAGALIKTYFAKTQKIDPEKIFSVSIMPCTAKKFEAQRSEF----SS 296
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
++ ++D +VD VLTT E+ +I+ K ++F +L++ DK++ G ++
Sbjct: 297 ADKEFKDS-KATADVDVVLTTKELAKMIKKKGIDFASLQDEKYDKLMGEGTGAGVIF--- 352
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHL-EFKTIRN-SDFREVALEVEGKTLLKFALCYGF 295
G++GG E R + + L +R + +E ++ + G +K A+ G
Sbjct: 353 GATGGVMEAAIRSVYYLVTKQAPPAALWNLTPVRGLTGVKEASVNIPGLGDVKVAVISGL 412
Query: 296 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL---- 351
N + ++ +VK + F+EVMACP GC GGGQ P+ P + I+T + L
Sbjct: 413 ANARKVMDQVKAGNASWAFIEVMACPGGCQYGGGQ--PRAAAPPSDTIRTQRSNSLYTLD 470
Query: 352 ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 399
+N + + +N + +Y ++L P S A++ +HTEY + T Q
Sbjct: 471 KNAKVRNSHENTEITQIYKDYLHAPMSHLAEEILHTEYESRANTFTPQ 518
>gi|331269074|ref|YP_004395566.1| hydrogenase (Fe) large chain [Clostridium botulinum BKT015925]
gi|329125624|gb|AEB75569.1| hydrogenase (Fe) large chain [Clostridium botulinum BKT015925]
Length = 441
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 132/386 (34%), Positives = 196/386 (50%), Gaps = 38/386 (9%)
Query: 11 LSNI--NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRD 67
L NI K K +I ++P RA+L E+FG+ P V KL + L++LG +FDT + D
Sbjct: 85 LKNILNKKNKLIIAQVAPSIRATLGEYFGLEPGTLVTGKLVSALRALGFDKVFDTDFAAD 144
Query: 68 LTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI-LPYISSVK 126
LT++E EF+ R K + LP+L+S CPGWI + E +P S+ K
Sbjct: 145 LTIVEEATEFVHRLK---------NKGKLPILTSCCPGWINFFEHDFNDLADIP--STCK 193
Query: 127 SPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEG 186
SPQQ G K ++ K+ PD+I V VMPC KK EAAR +
Sbjct: 194 SPQQMFGTIAKTYLANKMNINPDDIIVVAVMPCLAKKYEAARPEMTTN------------ 241
Query: 187 LEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAET 246
I +VD V++T E+ +LI+ ++F +LE D L G ++ G+SGG AE
Sbjct: 242 -GIRDVDIVISTKELAELIKENEIDFVSLENDEFDNPLGESTGAGTIF---GASGGVAEA 297
Query: 247 VFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKV 305
R A + L K I EFK R + +E + + G+ ++K A+ G + + ++ +
Sbjct: 298 AIRTAYELLTKKSIP-IFEFKETRGLEGIKEAEININGE-IIKIAIANGLDSARKVLCSI 355
Query: 306 KMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNP 363
K + +Y +E+MAC GC+ G Q K QS E K E +YLE N L +NP
Sbjct: 356 KAGEKNYHIIEIMACQGGCIGSGLQPFMKKHQSIIE--KRSEALYLEDRNKPLRKSHENP 413
Query: 364 LVRSLYDEWLEQPGSEKAKKHVHTEY 389
V +Y E+L +P +KA + +HT Y
Sbjct: 414 YVLKIYKEFLGEPFGKKAHEFLHTTY 439
>gi|157364204|ref|YP_001470971.1| hydrogenase, Fe-only [Thermotoga lettingae TMO]
gi|157314808|gb|ABV33907.1| hydrogenase, Fe-only [Thermotoga lettingae TMO]
Length = 583
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 125/393 (31%), Positives = 200/393 (50%), Gaps = 47/393 (11%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K +++ +P +R +L E FG+ P + K+ L+ LG +FDT+ + DLT++E +E
Sbjct: 224 KVLVVQTAPATRVALGEEFGLEPGSISTGKMVAALRKLGFDYVFDTNFAADLTIMEEGSE 283
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ R K + PM +S CP W+ AEK L L +SS KSP Q +G +
Sbjct: 284 FLERLK---------NGGPFPMFTSCCPAWVNMAEK-LYPQFLKNLSSAKSPHQMLGPLV 333
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +K G P+ I V++MPC KK + R + +P VD VL
Sbjct: 334 KTYFAKKKGIDPENILVVSIMPCTAKKDDIIRPQHMVN-------------GMPGVDIVL 380
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ LI++K + + +L + D L ++GV +GG E R A +
Sbjct: 381 TTRELGKLIKMKKIPYASLPDEEYDSPLGESTGAAAIFGV---TGGVMEAALRTAYELGL 437
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
GK + +EF +R D +E ++ +GK L K A+ +G N++ ++ K+ + Y FV
Sbjct: 438 GKPLP-KVEFTNVRGFDGIKEATIDFDGKQL-KVAVAHGGANVRKLLDKITSGEVYYDFV 495
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD-------PFKNPLVRSL 368
E+MACP+GC+ GGGQ PK L K + T +E + D +NP ++ L
Sbjct: 496 EIMACPAGCIGGGGQ--------PKSLDKNVLTRRMEGIYTIDERSTIRKSHENPSIKKL 547
Query: 369 YDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLH 401
Y+E+LE P S + + +HT Y V +S +++H
Sbjct: 548 YEEFLEHPLSHVSHELLHTTY--VDRSKKSKIH 578
>gi|167040761|ref|YP_001663746.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X514]
gi|300914799|ref|ZP_07132115.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X561]
gi|307723967|ref|YP_003903718.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X513]
gi|166855001|gb|ABY93410.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X514]
gi|300889734|gb|EFK84880.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X561]
gi|307581028|gb|ADN54427.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X513]
Length = 581
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 131/394 (33%), Positives = 206/394 (52%), Gaps = 53/394 (13%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K V+ +P R +L E FG+ P+ V K+ L+ +G +IFDT+ + DLT++E +
Sbjct: 224 KYVVAQTAPAVRVALGEEFGM-PIGSIVTGKMVAALRRMGFDAIFDTNFAADLTIMEEGS 282
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
E + R K + LPM++S PGWI + EK +I +S+ KSP +GA
Sbjct: 283 ELLERLK---------NGGKLPMITSCSPGWIAFCEKYYPEFI-DNLSTCKSPHMMMGAL 332
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+K + +K G P++IY V++MPC KKLE R + Q +D VD+V
Sbjct: 333 VKSYYAEKKGLNPEDIYIVSIMPCTAKKLEIERPEM------QHNGIKD-------VDAV 379
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA---GSSGGYAETVFRHAA 252
LTT E+ +I+ ++F L + D+ L G G A G++GG E R A
Sbjct: 380 LTTRELARMIKEMGIDFVNLPDEEYDEPL------GMSTGAAVIFGATGGVMEAALRTVA 433
Query: 253 KTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
+ GK ++ +++ +R + RE + ++GK + K A+ G N + ++ KVK + +
Sbjct: 434 DIVEGKDLD-KFDYEEVRGLEGVREATIRIDGKDI-KVAIANGTGNAKKLLDKVKAGEVE 491
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE----TIYL--ENVMLADPFKNPLV 365
Y F+EVM CP GC+ GGGQ P +P E+ K E IY +N+ + KNP +
Sbjct: 492 YHFIEVMGCPGGCIMGGGQ----PIHNPNEMEKVKELRAKAIYEADKNLPIRKSHKNPAI 547
Query: 366 RSLYDEWLEQPGSEKAKKHVHTEY-----HPVVK 394
+ LY+E+L P SEK+ +HT Y +P+VK
Sbjct: 548 QKLYEEFLGSPLSEKSHHLLHTHYSKKELYPLVK 581
>gi|256750971|ref|ZP_05491854.1| hydrogenase, Fe-only [Thermoanaerobacter ethanolicus CCSD1]
gi|256750081|gb|EEU63102.1| hydrogenase, Fe-only [Thermoanaerobacter ethanolicus CCSD1]
Length = 581
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 131/394 (33%), Positives = 206/394 (52%), Gaps = 53/394 (13%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K V+ +P R +L E FG+ P+ V K+ L+ +G +IFDT+ + DLT++E +
Sbjct: 224 KYVVAQTAPAVRVALGEEFGM-PIGSIVTGKMVAALRRMGFDAIFDTNFAADLTIMEEGS 282
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
E + R K + LPM++S PGWI + EK +I +S+ KSP +GA
Sbjct: 283 ELLERLK---------NGGKLPMITSCSPGWIAFCEKYYPEFI-DNLSTCKSPHMMMGAL 332
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+K + +K G P++IY V++MPC KKLE R + Q +D VD+V
Sbjct: 333 VKSYYAEKKGLNPEDIYIVSIMPCTAKKLEIERPEM------QHNGIKD-------VDAV 379
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA---GSSGGYAETVFRHAA 252
LTT E+ +I+ ++F L + D+ L G G A G++GG E R A
Sbjct: 380 LTTRELARMIKEMGIDFVNLPDEEYDEPL------GMSTGAAVIFGATGGVMEAALRTVA 433
Query: 253 KTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
+ GK ++ +++ +R + RE + ++GK + K A+ G N + ++ KVK + +
Sbjct: 434 DIVEGKDLD-KFDYEEVRGLEGVREATIRIDGKDI-KVAIANGTGNAKKLLDKVKAGEVE 491
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE----TIYL--ENVMLADPFKNPLV 365
Y F+EVM CP GC+ GGGQ P +P E+ K E IY +N+ + KNP +
Sbjct: 492 YHFIEVMGCPGGCIMGGGQ----PIHNPNEMEKVKELRAKAIYEADKNLPIRKSHKNPAI 547
Query: 366 RSLYDEWLEQPGSEKAKKHVHTEY-----HPVVK 394
+ LY+E+L P SEK+ +HT Y +P+VK
Sbjct: 548 QKLYEEFLGSPLSEKSHHLLHTHYSKKELYPLVK 581
>gi|167037864|ref|YP_001665442.1| hydrogenase, Fe-only [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|320116281|ref|YP_004186440.1| hydrogenase, Fe-only [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|166856698|gb|ABY95106.1| hydrogenase, Fe-only [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|319929372|gb|ADV80057.1| hydrogenase, Fe-only [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 581
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 131/394 (33%), Positives = 205/394 (52%), Gaps = 53/394 (13%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K V+ +P R +L E FG+ P+ V K+ LK +G ++FDT + DLT++E +
Sbjct: 224 KYVVAQTAPAVRVALGEEFGM-PIGSIVTGKMVAALKRMGFDAVFDTDFAADLTIMEEGS 282
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
E + R K + LPM++S PGWI + EK +I +S+ KSP +GA
Sbjct: 283 ELLERLK---------NGGKLPMITSCSPGWIAFCEKYYPEFI-DNLSTCKSPHMMMGAL 332
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+K + +K G P++IY V++MPC KKLE R + Q +D VD+V
Sbjct: 333 VKSYYAEKKGLNPEDIYIVSIMPCTAKKLEIERPEM------QHNGIKD-------VDAV 379
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA---GSSGGYAETVFRHAA 252
LTT E+ +I+ ++F L + D+ L G G A G++GG E R A
Sbjct: 380 LTTRELARMIKEMGIDFVNLPDEEYDEPL------GMSTGAAVIFGATGGVMEAALRTVA 433
Query: 253 KTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
+ GK ++ +++ +R + RE + ++GK + K A+ G N + ++ KVK + +
Sbjct: 434 DIVEGKDLD-KFDYEEVRGLEGVREATIRIDGKDI-KVAIANGTGNAKKLLDKVKAGEVE 491
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE----TIYL--ENVMLADPFKNPLV 365
Y F+EVM CP GC+ GGGQ P +P E+ K E IY +N+ + KNP +
Sbjct: 492 YHFIEVMGCPGGCIMGGGQ----PIHNPNEMEKVKELRAKAIYEADKNLPIRKSHKNPAI 547
Query: 366 RSLYDEWLEQPGSEKAKKHVHTEY-----HPVVK 394
+ LY+E+L P SEK+ +HT Y +P+VK
Sbjct: 548 QKLYEEFLGSPLSEKSHHLLHTHYSKKELYPLVK 581
>gi|326391445|ref|ZP_08212981.1| hydrogenase, Fe-only [Thermoanaerobacter ethanolicus JW 200]
gi|325992524|gb|EGD50980.1| hydrogenase, Fe-only [Thermoanaerobacter ethanolicus JW 200]
Length = 581
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 127/391 (32%), Positives = 205/391 (52%), Gaps = 47/391 (12%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K V+ +P R +L E FG+ P+ V K+ L+ +G ++FDT + DLT++E +
Sbjct: 224 KYVVAQTAPAVRVALGEEFGM-PIGSIVTGKMVAALRRMGFDAVFDTDFAADLTIMEEGS 282
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
E + R K + LPM++S PGWI + EK +I +S+ KSP +GA
Sbjct: 283 ELLERLK---------NGGKLPMITSCSPGWIAFCEKYYPEFI-DNLSTCKSPHMMMGAL 332
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+K + +K G P++IY V++MPC KKLE R + Q +D VD+V
Sbjct: 333 VKSYYAEKKGLNPEDIYVVSIMPCTAKKLEIERPEM------QHNGIKD-------VDAV 379
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
LTT E+ +I+ ++F L++ D+ L G ++G ++GG E R A +
Sbjct: 380 LTTRELARMIKEMGIDFVNLKDEEYDEPLGMSTGAGVIFG---ATGGVMEAALRTVADIV 436
Query: 256 FGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
GK ++ +++ +R + RE + ++G + K A+ G N + ++ KVK + +Y F
Sbjct: 437 EGKDLD-KFDYEEVRGLEGVREATIRIDGMDV-KVAIANGTGNAKKLLDKVKAGEVEYHF 494
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE----TIYL--ENVMLADPFKNPLVRSL 368
+EVM CP GC+ GGGQ P +P E+ K E IY +N+ + KNP ++ L
Sbjct: 495 IEVMGCPGGCIMGGGQ----PIHNPNEMEKVKELRAKAIYEADKNLPIRKSHKNPAIQKL 550
Query: 369 YDEWLEQPGSEKAKKHVHTEY-----HPVVK 394
Y+E+L P SEK+ +HT Y +P+VK
Sbjct: 551 YEEFLGSPLSEKSHHLLHTHYSKKELYPLVK 581
>gi|365127355|ref|ZP_09339980.1| hydrogenase, Fe-only [Subdoligranulum sp. 4_3_54A2FAA]
gi|363624567|gb|EHL75636.1| hydrogenase, Fe-only [Subdoligranulum sp. 4_3_54A2FAA]
Length = 582
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 192/380 (50%), Gaps = 36/380 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K V++ +P RA+L E FG+ P+ V K+ L+ LG +FDT + D T++E
Sbjct: 224 KHVVVQPAPSVRATLGECFGM-PIGTNVEGKMVAALRRLGFDGVFDTDTAADFTIMEEAT 282
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
EF+ R K + +LP+++S PGW+ + E I P +SS KSPQQ GA
Sbjct: 283 EFVQRVK---------NGGTLPLITSCSPGWVKFCETYYPDMI-PNLSSCKSPQQMFGAL 332
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
K + +K+G P +I V+VMPC KK E R+D D+ IP+VD
Sbjct: 333 TKTYYAEKMGLDPHDIVCVSVMPCTAKKFEIGRDDMSAAGDN-----------IPDVDIS 381
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
+TT E+ +I+ + F L + D L ++ G++GG E R A + +
Sbjct: 382 ITTRELGRMIERAGIKFTELPDEDFDPALGESTGAATIF---GATGGVMEAALRTAVELV 438
Query: 256 FGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
G+ +E +EF +R +D +E + +V G L + G N +++ V+ + Y F
Sbjct: 439 TGETLE-KVEFHDVRGTDGIKEASYDV-GGLHLNVCVASGLTNCDAVLKAVQSGEKHYDF 496
Query: 315 VEVMACPSGCLNGGGQ-IKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRSLY 369
+E MACP GC+NGGGQ +P ++ +L K L L + + +NPL++ +Y
Sbjct: 497 IEFMACPGGCVNGGGQPTQPASVRNFTDL-KALRAAALYGEDDAKAIRKSHENPLLKKVY 555
Query: 370 DEWLEQPGSEKAKKHVHTEY 389
E+L +PG KA +HT Y
Sbjct: 556 AEYLGEPGGHKAHHILHTSY 575
>gi|407926563|gb|EKG19530.1| Iron hydrogenase large subunit [Macrophomina phaseolina MS6]
Length = 654
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 130/380 (34%), Positives = 188/380 (49%), Gaps = 71/380 (18%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS----------IFDTS 63
+GK + S+SPQ+RAS+A +G S + + L GV+S I DT+
Sbjct: 120 GEGKIFVASVSPQARASIAATYGTSEREAGYMIEQLLSGPQGVRSGGPHGSGFTWIIDTN 179
Query: 64 CSRDLTLIEACNEFI-ARYKQSQESDDERSNSSL----PMLSSACPGWICYAEKQLGSYI 118
R+ L+ A +E + A S + E ++S+ P+L+SACPGWICYAEK Y+
Sbjct: 180 TVREAALVLAADEVVSALSNPSTPAPGEEGSASVVPKKPILTSACPGWICYAEKTH-PYV 238
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
LP++S KSPQ G IK + +K G PD+++H+ VMPC+DKKLEA+R +
Sbjct: 239 LPHLSRTKSPQALAGTLIKSVLYRKYGIPPDKVWHLAVMPCFDKKLEASRSELTSSAWLP 298
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK--------------ML 224
+ + +VD V+T E+L L Q + ++F +L PL + +
Sbjct: 299 SSSSD----PVRDVDCVITARELLMLAQSRDIHFPSLPGKPLPRSQRPRFPDRALDAFLF 354
Query: 225 TNVDDEGHLYG--VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE 282
+ G G VAGSSGGY H +T + L + RN+D E L+ E
Sbjct: 355 SPRRRPGVRNGDAVAGSSGGY----LYHIMQTFAAQHPGSTLHVERGRNADVVEYLLKGE 410
Query: 283 G-KTLLKFALCYGFQNLQNIVRKVKMRKC-----------------------------DY 312
G TL+K A YGF+N+QN+VR++K + +Y
Sbjct: 411 GGNTLVKTARFYGFRNIQNLVRRLKPARASRMPGARTGVARRPGGVAAAAKAGGGADAEY 470
Query: 313 QFVEVMACPSGCLNGGGQIK 332
+VEVMACP GC NGGGQIK
Sbjct: 471 AYVEVMACPGGCTNGGGQIK 490
>gi|402836885|ref|ZP_10885416.1| [FeFe] hydrogenase, group A [Mogibacterium sp. CM50]
gi|402269901|gb|EJU19170.1| [FeFe] hydrogenase, group A [Mogibacterium sp. CM50]
Length = 584
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 128/400 (32%), Positives = 202/400 (50%), Gaps = 43/400 (10%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK S+ + + I + K VI+ +P +R ++AE F P+ + KL+ L LG
Sbjct: 207 LYEKDSVTQVMEAIEDPDKYVIVQAAPSTRVAIAECFD-QPIGTEAEGKLSAALHRLGFD 265
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT+ S DLT++E NE I R R LPM++S PGW+ + E
Sbjct: 266 RVFDTNFSADLTIVEEANELIERV---------RGGGVLPMITSCSPGWVKFCEHYYPD- 315
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
++P +S+ KSPQQ GA K + + +G D I V+VMPC KK E R D
Sbjct: 316 LIPNLSTCKSPQQMFGAVTKSYYAEVMGIPADRIVSVSVMPCTAKKHELGRND------Q 369
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
++ Y+D VD +TT E+ +I+L + F LE+ P D L G ++G
Sbjct: 370 GQDGYQD-------VDFSITTRELAKMIRLAGIEFMKLEDEPYDNPLGEYTGAGVIFG-- 420
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQ 296
++GG E R A + L G + +L+F +R +E +++G+ + K A+ G
Sbjct: 421 -ATGGVMEAALRTAVEKLTGDELI-NLDFVDVRGVKGVKEAEYDLQGQKV-KVAVASGLA 477
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI-------KTLETI 349
N + I+ KVK + DY F+E+M CP GC+NGGGQ P + + K L T+
Sbjct: 478 NARVILDKVKAGEADYTFIEIMGCPGGCVNGGGQ--PHVDSQIRNFMDVRAERAKGLYTL 535
Query: 350 YLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+N + +NP++ +Y+++ PG E+A +HT Y
Sbjct: 536 D-KNAPIRKSHENPVIVKMYEDYFGVPGGERAHHLLHTTY 574
>gi|167750765|ref|ZP_02422892.1| hypothetical protein EUBSIR_01743 [Eubacterium siraeum DSM 15702]
gi|167656200|gb|EDS00330.1| hydrogenase, Fe-only [Eubacterium siraeum DSM 15702]
Length = 583
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 124/380 (32%), Positives = 191/380 (50%), Gaps = 37/380 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGI---SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K V++ +P RASL E FG +P++ K+ L+ LG ++FDT+ DLT++E
Sbjct: 226 KVVVVQTAPAVRASLGEAFGYPMGTPVE--GKMVAALRRLGFNAVFDTNFGADLTIMEES 283
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
+EF+ R + LPM++S PGWI + E +I P +SS KSPQQ GA
Sbjct: 284 HEFLDRVT---------NGGVLPMITSCSPGWIRFCEAYFPEFI-PNLSSCKSPQQMNGA 333
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
K + +K+G P I V+VMPC KK E RED +P+VD
Sbjct: 334 ITKTYWAKKMGIDPKNIVSVSVMPCTAKKFEIGRED-------------QSAAGVPDVDI 380
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
+TT E++ +I + F L + D L N ++G ++GG E R A
Sbjct: 381 SITTRELVKMINRAGLRFRDLPDEVADSPLGNGTGAAVIFG---ATGGVMEAALRTAVWK 437
Query: 255 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
L G+ + +EFK +R + + A G +K A+ G N + + +VK + + F
Sbjct: 438 LTGEAADSPVEFKDVRGVEGIKTAEYKVGDLTVKVAVVSGLANAKKFLTQVKNGEVECHF 497
Query: 315 VEVMACPSGCLNGGGQ-IKPKPGQS----PKELIKTLETIYLENVMLADPFKNPLVRSLY 369
+E+MACP GC+NGGGQ I+P ++ E K L ++ N L ++P V+ +Y
Sbjct: 498 IEIMACPGGCVNGGGQVIQPADVRNFTDIRAERAKALYSLDDAN-KLRKSHESPDVKEVY 556
Query: 370 DEWLEQPGSEKAKKHVHTEY 389
+ +L +PGS A + +HT Y
Sbjct: 557 ENFLGEPGSHIAHEILHTSY 576
>gi|291530731|emb|CBK96316.1| hydrogenases, Fe-only [Eubacterium siraeum 70/3]
Length = 583
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 124/380 (32%), Positives = 191/380 (50%), Gaps = 37/380 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGI---SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K V++ +P RASL E FG +P++ K+ L+ LG ++FDT+ DLT++E
Sbjct: 226 KVVVVQTAPAVRASLGEAFGYPMGTPVE--GKMVAALRRLGFNAVFDTNFGADLTIMEES 283
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
+EF+ R + LPM++S PGWI + E +I P +SS KSPQQ GA
Sbjct: 284 HEFLDRVT---------NGGVLPMITSCSPGWIRFCEAYFPEFI-PNLSSCKSPQQMNGA 333
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
K + +K+G P I V+VMPC KK E RED +P+VD
Sbjct: 334 ITKTYWAKKMGIDPKNIVSVSVMPCTAKKFEIGRED-------------QSAAGVPDVDI 380
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
+TT E++ +I + F L + D L N ++G ++GG E R A
Sbjct: 381 SITTRELVKMINRAGLRFRDLPDEVADSPLGNGTGAAVIFG---ATGGVMEAALRTAVWK 437
Query: 255 LFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
L G+ + +EFK +R + + A G +K A+ G N + + +VK + + F
Sbjct: 438 LTGEAADSPVEFKDVRGVEGIKTAEYKVGDLTVKVAVVSGLANAKKFLTQVKNGEVECHF 497
Query: 315 VEVMACPSGCLNGGGQ-IKPKPGQS----PKELIKTLETIYLENVMLADPFKNPLVRSLY 369
+E+MACP GC+NGGGQ I+P ++ E K L ++ N L ++P V+ +Y
Sbjct: 498 IEIMACPGGCVNGGGQVIQPADVRNFTDIRAERAKALYSLDDAN-KLRKSHESPDVKEVY 556
Query: 370 DEWLEQPGSEKAKKHVHTEY 389
+ +L +PGS A + +HT Y
Sbjct: 557 ENFLGEPGSHIAHEILHTSY 576
>gi|303257906|ref|ZP_07343915.1| [Fe] hydrogenase gamma [Burkholderiales bacterium 1_1_47]
gi|331000429|ref|ZP_08324104.1| putative ferredoxin hydrogenase HydA1 [Parasutterella
excrementihominis YIT 11859]
gi|302859249|gb|EFL82331.1| [Fe] hydrogenase gamma [Burkholderiales bacterium 1_1_47]
gi|329571761|gb|EGG53441.1| putative ferredoxin hydrogenase HydA1 [Parasutterella
excrementihominis YIT 11859]
Length = 597
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 127/392 (32%), Positives = 191/392 (48%), Gaps = 39/392 (9%)
Query: 21 IISLSPQSRASLAEHFG-ISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
++ +P RA+L + FG +S V K++ LK +G + DT+ S D+ ++E E +
Sbjct: 230 VVQFAPSVRATLGDAFGTLSGTNVEKRIIAGLKMMGANYVLDTNFSADVVIMEEGTELLN 289
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
R K S +PM +S CPGW+ + E Q +L ++S+ +SPQ + + K
Sbjct: 290 RIKDKH--------SVMPMFTSCCPGWVSFVE-QHRPEMLDHLSTTRSPQAVLSSLAKTW 340
Query: 140 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
+ +K+G P +I +++MPC KK+EA R +G +P+ D VLT
Sbjct: 341 LPEKIGAEPSKIRVISIMPCTAKKIEAGRPQLA-----------KDG--VPDTDLVLTVR 387
Query: 200 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA-GSSGGYAETVFRHAAKTLFGK 258
E+ L + + ++ + +E+ D T G GV G SGG AE R L GK
Sbjct: 388 ELARLFKSRGIDLKEIEDGEFD---TPFMSRGSGAGVIFGKSGGVAEAASRTLYHVLTGK 444
Query: 259 VIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVM 318
+ ++ FK + + A EG LK A+ YG N I +V CDY F+EVM
Sbjct: 445 EVN-NVPFKPSNHPHVYKEADMDEGGVKLKIAVVYGLANANKICDEVAAGTCDYNFIEVM 503
Query: 319 ACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQP 376
CP GC+NGGG I+ + G K E + EN + NP+V+ LYDE+L +P
Sbjct: 504 TCPGGCVNGGGTIRFR-GNYLNATSKRFEVLERADENSPVRQSHNNPMVKELYDEFLGEP 562
Query: 377 GSEKAKKHVHTEYH-----PVVKSITAQLHNW 403
S KA + +HT Y P V SI H W
Sbjct: 563 NSHKAHQLLHTSYDDRSKTPAVPSIR---HVW 591
>gi|89893682|ref|YP_517169.1| hypothetical protein DSY0936 [Desulfitobacterium hafniense Y51]
gi|423075239|ref|ZP_17063956.1| hydrogenase, Fe-only [Desulfitobacterium hafniense DP7]
gi|89333130|dbj|BAE82725.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|361853713|gb|EHL05848.1| hydrogenase, Fe-only [Desulfitobacterium hafniense DP7]
Length = 1150
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 199/391 (50%), Gaps = 42/391 (10%)
Query: 17 GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
GK + ++P R+ ++ +G+S + + + LK +G +FD + + DLT++E E
Sbjct: 704 GKTTVAFVAPAVRSVVSSQYGVSYQEASRFIAGLLKKIGFDKVFDFTFAADLTIVEETTE 763
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ R + S+ +P +S CPGW+ + E++ I+PY+SS KSPQ +GAT+
Sbjct: 764 FLTRLQ---------SHKRIPQFTSCCPGWVNFVERRYPE-IIPYLSSCKSPQMMMGATV 813
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K+H + P ++Y V+++PC KK EAAR +F I +VD+VL
Sbjct: 814 KNHFTELSEIDPKDLYVVSIVPCIAKKYEAARPEFATD-------------GIRDVDAVL 860
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
T+ E+L++ +K + +E + V G L+ G+SGG AE R A + L
Sbjct: 861 TSTEMLEMADIKLIEPADVESQDFCEPYKRVSGAGILF---GASGGVAEAALRMAVEKLT 917
Query: 257 GKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRK-VKMRKCDYQF 314
G+ I L+++ +R +E A+E +GK + A+ G N++ I+ K ++ + Y
Sbjct: 918 GEAITDRLDYQEVRGLQGIKEAAVEAKGKK-VNVAVISGLHNVEPILEKIIQGTEVGYDL 976
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETI--YLENVMLADPFK----NPLVRSL 368
+EVMACP GC+ G G P E I TLE L N+ ++ NP + L
Sbjct: 977 IEVMACPGGCICGAGHPVP-------EKIDTLEKRQQVLVNIDQTSRYRKSQENPDILRL 1029
Query: 369 YDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 399
YDE+ + S A K +HT Y V + A+
Sbjct: 1030 YDEYYGEANSPLAHKLLHTHYEAVKREPVAK 1060
>gi|212696951|ref|ZP_03305079.1| hypothetical protein ANHYDRO_01514 [Anaerococcus hydrogenalis DSM
7454]
gi|212676039|gb|EEB35646.1| hypothetical protein ANHYDRO_01514 [Anaerococcus hydrogenalis DSM
7454]
Length = 577
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 134/393 (34%), Positives = 213/393 (54%), Gaps = 34/393 (8%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSI 59
+ EK ++ E + K +I+ ++P R +L E FG P + V ++ T LK+LG +
Sbjct: 209 LTEKSNIKEVWKLLESDKHLIVQVAPAVRVALGEMFGRKPGESVEGEMVTALKNLGFDKV 268
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI- 118
FDT+ + DLT++E NEF+ R + LP+L+S CPGW+ + E+Q I
Sbjct: 269 FDTNFAADLTIMEEANEFVKRLE---------GKGKLPILTSCCPGWVNFMEQQFSDLID 319
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+P SS KSP + GA K + +K+G +P++I V+VMPC KK EA R++ +
Sbjct: 320 IP--SSCKSPHEMFGAIAKTYYAEKIGKKPEDIKVVSVMPCISKKYEAKRDEL------E 371
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
E Y D VD VLTT E+ +I+ ++F LE+S D + G ++ G
Sbjct: 372 NEGYSD-------VDIVLTTRELGAMIKEAGIDFNKLEKSDFDNPMGESTGAGDIF---G 421
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
+SGG E R A T+ G+ +E +EF+ +R ++ +++ G+ +K A+ G N
Sbjct: 422 TSGGVIEATIRTAYDTITGEELE-KVEFEDLRGLKGIKQAKVDINGRE-IKIAVANGLGN 479
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSP-KELIKTLETIYLENVML 356
+ ++ K++ + + +EVMACP GC+ GGGQ S KE K L I EN L
Sbjct: 480 TRKLLEKLRNEEIELDAIEVMACPGGCIGGGGQPYHNGKISILKERSKGLYQID-ENKKL 538
Query: 357 ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
++NP ++ LY E+L + G+EKAK+ +HT Y
Sbjct: 539 RKSYQNPYIKKLYQEYLGEVGNEKAKELLHTSY 571
>gi|158319966|ref|YP_001512473.1| hydrogenase, Fe-only [Alkaliphilus oremlandii OhILAs]
gi|158140165|gb|ABW18477.1| hydrogenase, Fe-only [Alkaliphilus oremlandii OhILAs]
Length = 578
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 126/397 (31%), Positives = 203/397 (51%), Gaps = 36/397 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK+++ + I +K K V++ +P RA+L E FGI P+ V K+ L+ LG
Sbjct: 202 LYEKENIKDVWKAIYDKEKYVVVQTAPAIRAALGEEFGI-PVGTSVTGKMVAALRRLGFD 260
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT + DLT++E E I+R S +LP+++S CPGWI +AE
Sbjct: 261 KVFDTDFTADLTIMEEGTELISRLT---------SGENLPLMTSCCPGWIKFAE-HFYPD 310
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+L +S+ KSP + GA IK + +K+ P +I V++MPC KK E+AR +
Sbjct: 311 MLDNLSTCKSPHEMEGALIKSYFAEKMAMDPKKIVTVSIMPCTAKKFESARGEL------ 364
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
++GL+ +VD VLTT E+ +I+ ++FE L D ++GV
Sbjct: 365 -----SNDGLQ--DVDLVLTTRELARMIKEAGIDFENLPVEEFDNPFGESTGAAVIFGV- 416
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQ 296
+GG AE R + L GK +E + + +R + +E +E+ + + +G
Sbjct: 417 --TGGVAEAALRTVFEILSGKELE-TVNYTAVRGLEGVKEAVIELPNGMTINSIVAHGLG 473
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ--IKPKPGQSPKELIKTLETIYLEN- 353
N + + V+ + Y F+EVMACP GC+ GGGQ + + ++ IY E+
Sbjct: 474 NARKALDVVRNGEKQYHFIEVMACPGGCVTGGGQPIVDSEYRMDHDIRLQRASAIYAEDE 533
Query: 354 -VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+L KNP + +Y+E+LE P SE + KH+HT Y
Sbjct: 534 SKVLRKSHKNPYITKIYEEFLEAPNSEVSHKHLHTHY 570
>gi|373486849|ref|ZP_09577520.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Holophaga
foetida DSM 6591]
gi|372010802|gb|EHP11405.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Holophaga
foetida DSM 6591]
Length = 588
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 126/382 (32%), Positives = 193/382 (50%), Gaps = 38/382 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K V++ ++P RA+L E F + P+ V KL T L+ LG ++FDT+ DLT++E
Sbjct: 228 KHVVVQVAPAIRATLGETFDL-PMGTPVTGKLITALRRLGFDTVFDTNFGADLTIVEEAT 286
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
EF+ R + + +LP+L+S PGW+ + EK ++ Y S+ KSP Q
Sbjct: 287 EFLNRVTKGE---------NLPLLTSCSPGWVSFLEK-FYPEMIRYTSTCKSPMQMTSTL 336
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
IK + +K G P +IY V +MPC KK EAAR + + P D+V
Sbjct: 337 IKSYYAEKKGMDPRDIYVVAIMPCVAKKFEAARPEHSLPDGT------------PYTDAV 384
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
LTT E+ +I+ ++F AL + D+ L ++G ++GG E R AA L
Sbjct: 385 LTTRELAWMIKSYGIDFNALPDGEFDRPLGISSGAADIFG---ATGGVMEAALRTAAVKL 441
Query: 256 FGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
G+ + G L F+ IR + +E L V G ++ A+ G N ++++ +K + +Y
Sbjct: 442 TGEEL-GPLVFEEIRGVTGIKEATLRV-GDKDIRIAVSNGLNNAKHVLDAIKSGEKEYHL 499
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSP------KELIKTLETIYLENVMLADPFKNPLVRSL 368
VE+MACP GC+ GGGQ P+ P + K L I + L +NP + L
Sbjct: 500 VEIMACPGGCIMGGGQPYPRADHDPLDPETARTRAKALYGIDAQK-QLRRSHENPAIEHL 558
Query: 369 YDEWLEQPGSEKAKKHVHTEYH 390
Y E+L +P SE A K +HT Y
Sbjct: 559 YAEFLGEPSSELAHKLLHTHYQ 580
>gi|78355522|ref|YP_386971.1| Fe-only hydrogenase, large and small subunits, cytoplasmic
[Desulfovibrio alaskensis G20]
gi|78217927|gb|ABB37276.1| Fe-only hydrogenase, large & small subunits, cytoplasmic
[Desulfovibrio alaskensis G20]
Length = 458
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/385 (31%), Positives = 199/385 (51%), Gaps = 37/385 (9%)
Query: 12 SNINKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTL 70
+ +G ++ +P RA++ E FG+ + +L L+ LG ++DT+ + DLT+
Sbjct: 100 GRLAEGCHSMVQCAPAVRAAIGEEFGMPAGALTPGRLAAALRRLGFDRVYDTNFAADLTI 159
Query: 71 IEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 130
+E +E + R + + LPM +S CP W+ YAE+Q +L ++SS KSPQQ
Sbjct: 160 MEEGSELLQRMEGA---------GPLPMFTSCCPAWVRYAEQQFPD-LLEHLSSCKSPQQ 209
Query: 131 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 190
GA K + Q G P +++ V VMPC KK EA R + + RD
Sbjct: 210 MAGAVFKSYGAQLDGVDPRQVFSVAVMPCTCKKAEAQRPGM------EHDGVRD------ 257
Query: 191 EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH 250
VD+VLTTGE+ +++ ++F AL + P D+ L + G+++G+ +GG E R
Sbjct: 258 -VDAVLTTGELAAMLRQAHIDFAALPDEPFDRPLGSYSGAGNIFGL---TGGVMEAALRT 313
Query: 251 AAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK 309
A + + G+ + E +R + R L ++G+T + A+ G Q+++ ++ V+
Sbjct: 314 AYELVTGEPVP-CTELVYVRGGEGIRHATLTMDGRTF-RVAVVAGLQHVRPLLEAVRAGT 371
Query: 310 CDYQFVEVMACPSGCLNGGGQIKPK---PGQSPKELIKTLETIYLENVMLA--DPFKNPL 364
CD FVEVM CP GC++GGGQ PK P Q + +Y + LA +NP
Sbjct: 372 CDVNFVEVMCCPQGCISGGGQ--PKVLLPFQRDEVYAARKAALYRHDAELACRKSHENPQ 429
Query: 365 VRSLYDEWLEQPGSEKAKKHVHTEY 389
V++LY E+L +P S + +HT Y
Sbjct: 430 VQALYREFLGEPLSHVSHNLLHTVY 454
>gi|333897409|ref|YP_004471283.1| hydrogenase, Fe-only [Thermoanaerobacterium xylanolyticum LX-11]
gi|333112674|gb|AEF17611.1| hydrogenase, Fe-only [Thermoanaerobacterium xylanolyticum LX-11]
Length = 581
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 202/382 (52%), Gaps = 36/382 (9%)
Query: 14 INKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+++ K V+ +P R +L E FG+ + K+ + LK LG +FDT + DLT+IE
Sbjct: 220 LDEKKYVVAQTAPAVRVALGEEFGMPYGSIVTGKMVSALKRLGFDKVFDTDFAADLTIIE 279
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
NE + R + LPM++S PGWI Y E+ +I +S+ KSP +
Sbjct: 280 EGNELLKRLNEG---------GKLPMITSCSPGWINYCERYYPEFI-DNLSTCKSPHMMM 329
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
GA IK + +K G P +I+ V++MPC KK E R + +G++ +V
Sbjct: 330 GAIIKSYFAEKEGIDPKDIFVVSIMPCTAKKGEIDRPQMIV-----------DGMK--DV 376
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D+VLTT E+ +I+ ++F +L +S D L ++G ++GG E R A
Sbjct: 377 DAVLTTRELARMIKQSGIDFVSLPDSEYDNPLGESSGAAVIFG---ATGGVMEAALRTVA 433
Query: 253 KTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
+ G+ IE + E++ +R + +E +++ GK + K A+ G N + ++ K+K + +
Sbjct: 434 DIVEGRDIE-NFEYEEVRGLEGIKEAKIDIGGKEI-KIAVANGTGNAKKLLDKIKNGEAE 491
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIK--TLETIYL--ENVMLADPFKNPLVRS 367
Y F+EVM CP GC+ GGGQ P + K+L++ L+ IY +++ + KNP++
Sbjct: 492 YHFIEVMGCPGGCIMGGGQPIHNPNE--KDLVRESRLKAIYEADKDLPIRKSHKNPMITK 549
Query: 368 LYDEWLEQPGSEKAKKHVHTEY 389
LY+E+L P EK+ +HT Y
Sbjct: 550 LYEEFLTSPLGEKSHHLLHTTY 571
>gi|259511482|sp|A6RR15.2|NAR1_BOTFB RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
Length = 572
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 129/368 (35%), Positives = 188/368 (51%), Gaps = 72/368 (19%)
Query: 17 GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-GVKS----------IFDTSCS 65
GK + S+SPQSRAS+A FG++ + + L G+K+ + DT+ +
Sbjct: 115 GKIYVASVSPQSRASIAATFGVTEREAGYMIEHLLSGPKGIKNRAVYRNAFQWVVDTNIT 174
Query: 66 RDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSV 125
R+ L+ E IA ++E+ P+L+S+CPGW+CYAEK ++LP++S +
Sbjct: 175 REACLVLGAEEVIASMNGTEETKK-------PILTSSCPGWVCYAEKTH-PHVLPHLSRM 226
Query: 126 KSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDE 185
KSPQ +G IK + +KLG P+ I+HV VMPC+DKKLEA+RE+ D+ E
Sbjct: 227 KSPQALMGTLIKTTLSRKLGISPERIWHVAVMPCFDKKLEASREELT---DAVWEGTGTR 283
Query: 186 GLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL---------DKMLTN------VDDE 230
G+ +VDSV+T+ E+L L + ++F L +PL D L +
Sbjct: 284 GVR--DVDSVITSKELLMLADSRRIDFSKLPRTPLPSSSHIPFPDPTLNSFLFPSNRRSS 341
Query: 231 GHLYGVAGSSGG---YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GKTL 286
+ AGSSGG YA F K + I+G RN+D + + + G L
Sbjct: 342 SNGSRDAGSSGGNLHYALHYFASQHKGSSVQTIKG-------RNADVVDYTVVADNGDIL 394
Query: 287 LKFALCYGFQNLQNIVRKVKMRK----------------------CDYQFVEVMACPSGC 324
LK A YGF+N+QN+VR++K + DY +VEVMACP GC
Sbjct: 395 LKAARYYGFRNIQNLVRRLKPARPSRMPGGKPIGSARRPNGKATGPDYTYVEVMACPGGC 454
Query: 325 LNGGGQIK 332
NGGGQIK
Sbjct: 455 TNGGGQIK 462
>gi|206895600|ref|YP_002246551.1| hydrogenase [Coprothermobacter proteolyticus DSM 5265]
gi|206738217|gb|ACI17295.1| hydrogenase [Coprothermobacter proteolyticus DSM 5265]
Length = 581
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 205/387 (52%), Gaps = 48/387 (12%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+K K V++ +P R +L E FG+ P+ V K+ L+ LG + +FDT DLT++E
Sbjct: 221 DKRKHVVVQTAPAVRVALGEEFGM-PVGSIVTGKMVAALRRLGFEVVFDTDFGADLTIME 279
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+E I R K LPM++S PGWI + EK ++ +S+ KSP +
Sbjct: 280 EGSELIERLKYG---------GKLPMITSCSPGWINFCEKYYPDFV-ENLSTCKSPHMML 329
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
GA IK + +K+G+ P+++Y V+VMPC KK+E R + + +GL+ +V
Sbjct: 330 GALIKTYYAEKMGWNPEDVYVVSVMPCTAKKVEIERPENMH-----------DGLQ--DV 376
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA---GSSGGYAETVFR 249
D+VLTT E+ +I+ ++F L + D+ L G G A G++GG E R
Sbjct: 377 DAVLTTRELARMIKEAGIDFVNLPDEEFDQPL------GMSTGAAVIFGATGGVMEAALR 430
Query: 250 HAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMR 308
++ + GK ++ ++F+ +R D RE + V+G LK A+ G N + ++ K++
Sbjct: 431 TVSEIVEGKPLD-KIDFEEVRGLDGVREATVTVDGLD-LKLAIVNGTGNAKKLLDKIRSG 488
Query: 309 KCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL--IKTLETIYL----ENVMLADPFKN 362
+ +Y F+E+M CP GC+ GGGQ P P E+ ++ L + +N+ L +N
Sbjct: 489 EAEYHFIEIMGCPGGCITGGGQ----PIHHPNEMAEVRKLRAAAIYQADKNLPLRKSHEN 544
Query: 363 PLVRSLYDEWLEQPGSEKAKKHVHTEY 389
P ++ +Y+E+L P EK+ +HT Y
Sbjct: 545 PAIKQIYEEYLGHPLGEKSHHLLHTHY 571
>gi|164658812|ref|XP_001730531.1| hypothetical protein MGL_2327 [Malassezia globosa CBS 7966]
gi|159104427|gb|EDP43317.1| hypothetical protein MGL_2327 [Malassezia globosa CBS 7966]
Length = 595
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 133/411 (32%), Positives = 194/411 (47%), Gaps = 101/411 (24%)
Query: 5 QSLDEFLSNI--NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDT 62
QS+DE + + + + I ++S Q+ ASL +G+ P V+ ++ LK LG + D
Sbjct: 91 QSIDEIRNELAQKRERIFIATISSQTIASLQARWGMQPPAVWTRVCAALKQLGFDQVHDL 150
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
S +R ++L E EF R ++ + +LPM++SACPGW+CYAEK G +LPY+
Sbjct: 151 SLARHMSLYETVREF--RLRREARMRGTKDAPTLPMVASACPGWVCYAEKAHGE-LLPYV 207
Query: 123 SSVKSPQQTIGATIKHHIC-QKLGFRPDE-----IYHVTVMPCYDKKLEAAREDFVFQLD 176
++ KSPQQ G K Q+ G + +YHV+VMPCYDKKLEA R+D
Sbjct: 208 ATTKSPQQLAGILAKRFWGPQQKGVDISQDSAPYVYHVSVMPCYDKKLEAVRQD------ 261
Query: 177 SQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEE------------------- 217
E+T + + +VD VLTTGE+ DLI V+ A E
Sbjct: 262 -NEQTSQTK-----DVDCVLTTGELHDLIVGVDVHANAETEPRESESERASDKQMDEASD 315
Query: 218 ----------------------SPLDKMLTNVDDEGHLYG---VAGSSGGYAETVFRHAA 252
+P ++ T D H+ SSGGY V A
Sbjct: 316 AWKHVMSGSSSGSASEQNEARITPRPQVATEFCDPAHVPAHQEPGSSSGGYIFAVLLDA- 374
Query: 253 KTLFGKVIEGH-------LEFKTIRNSDFREVALEV-EGKTLLKFALCYGFQNLQNIVRK 304
+ I H +E +R++D+ + L +G TL K A CYGF+N+QN+VRK
Sbjct: 375 ---YMSWIRSHPDTSQPTVELHILRSTDYTDYTLRAPDGTTLFKGATCYGFRNIQNVVRK 431
Query: 305 V-------------KMRKC---------DYQFVEVMACPSGCLNGGGQIKP 333
+ +MR Y ++EVMACP GC+NGGGQ++P
Sbjct: 432 LQRETGARSTRGRGRMRSVARPSPQDTHPYDYIEVMACPGGCVNGGGQLRP 482
>gi|160881923|ref|YP_001560891.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
gi|160430589|gb|ABX44152.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
Length = 582
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 129/399 (32%), Positives = 193/399 (48%), Gaps = 40/399 (10%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK S+D L I + K V + +P RA L E FG+ P+ V K+ L+ +G
Sbjct: 207 LYEKDSIDAVLEAIADPEKFVFVQTAPAVRAGLGEAFGL-PIGTNVEGKMVAALRRIGFD 265
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT+ S DLT++E EF+ R + + LP+++S PGWI Y E
Sbjct: 266 KVFDTNFSADLTIMEEATEFLDRVQ---------NGGVLPLITSCSPGWIKYCEHYFPD- 315
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+ +SS KSPQQ GA K + +KLG P ++ V++MPC KK E R+D
Sbjct: 316 MTENLSSCKSPQQMFGAIAKTYYAEKLGIDPAKMVSVSIMPCTAKKFELGRDD------- 368
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
+P+VD LT E LI + F +L + D L ++G
Sbjct: 369 ------QSAAGVPDVDYSLTVREFARLIDKVGLKFLSLPDEQYDNPLGISTGAAVIFG-- 420
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQ 296
++GG E R A L G+ + +EF +R +E +V G + A+ G
Sbjct: 421 -ATGGVMEAALRTAVWKLTGENSDSPIEFNEVRGVQGIKEATFQVAGMDV-NVAVASGLS 478
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL--IKTLETIYLENV 354
N + ++ KVK + +Y F+E+M CP GC+NGGGQ P+ S + I+ L L +
Sbjct: 479 NARELLEKVKSGEANYHFIEIMGCPGGCVNGGGQ--PQVPASVRNFTDIRALRAKVLYDS 536
Query: 355 MLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
A+P + N V+ +YDE+L PGS KA +HT Y
Sbjct: 537 DAANPLRMSHENEAVKMVYDEFLGAPGSHKAHDILHTTY 575
>gi|395332687|gb|EJF65065.1| iron hydrogenase [Dichomitus squalens LYAD-421 SS1]
Length = 615
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 170/352 (48%), Gaps = 84/352 (23%)
Query: 42 QVFKKLTTFLKS-LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLS 100
QV ++++ F K LG +FDT+ +R +TL+E EF R + LPML+
Sbjct: 150 QVLRRVSAFCKEVLGFAHVFDTTFARHITLLEHAKEFTER---------KNGEGKLPMLA 200
Query: 101 SACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCY 160
SACPGW+CYAEK +LP+IS KSPQQ +G +K K G PD+IYHVTVMPCY
Sbjct: 201 SACPGWVCYAEKTHAE-MLPFISRTKSPQQVMGTLVKEWSGAKWGKTPDQIYHVTVMPCY 259
Query: 161 DKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAV---------N 211
DKKLEA+R+DF +E +VD V+TTGE+ L+Q K N
Sbjct: 260 DKKLEASRQDFY-----------NEAYATRDVDCVITTGELQLLMQEKGWDLSIPVSDEN 308
Query: 212 FEALEESPLDKMLTNVDDEGHLYGV--------------AGSSGGYAETVFRHAAKTLFG 257
L M VDD+ G+ SSG Y ++ +
Sbjct: 309 VPRLTSFSRGAMFGTVDDQRSDPGMLSADLAFPELLMHPGTSSGSYLHSIISTLTSSSSN 368
Query: 258 -KVIEGHLEFKTIRNSDFRE--VALEVEGKTLLKFALCYGFQNLQNIVRKV--------- 305
V E + KT+R +D+ E V G+ + + A CYGF+NLQN+VRKV
Sbjct: 369 PDVFE--VTTKTVRTADYEEYTVTNRETGQVVFRGAKCYGFRNLQNVVRKVGRDSGVQVG 426
Query: 306 ---------------KMRK----------CDYQFVEVMACPSGCLNGGGQIK 332
+RK Y +VEVMACPSGC+NGGGQ++
Sbjct: 427 RGAAGRLAGLRARGRAVRKDAAGSAAQEDRGYDYVEVMACPSGCVNGGGQLR 478
>gi|406860086|gb|EKD13146.1| iron only hydrogenase large subunit domain-containing protein
[Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 570
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 126/370 (34%), Positives = 189/370 (51%), Gaps = 62/370 (16%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS----------IFDTS 63
+ G+ + S+SPQ+RAS+A F ++ + + L GVK + DT+
Sbjct: 103 DPGRIYVASVSPQTRASIAATFKVTEREAGYMIEQLLSGPRGVKGRAVYRNAFQWVVDTN 162
Query: 64 CSRDLTLIEACNEFIARYKQSQES------DDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+RD L+ +E + + + D ++ P+LSS+CPGW+CYAEK +
Sbjct: 163 VARDACLVLGADEVMHSLLAGKGTTNGLGQGDAQNQPQKPILSSSCPGWVCYAEKTH-PH 221
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
ILP++S +KSPQ +G +K + +KLG PD I+HV +MPC+DKKLEA+RE+ D+
Sbjct: 222 ILPHLSRLKSPQALMGTLLKTTLSKKLGISPDRIWHVAIMPCFDKKLEASREELT---DA 278
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK------------MLT 225
E G+ +VDSV+T+ E+L L + + V+F L +PL +
Sbjct: 279 VWEGTGTRGVR--DVDSVITSKELLMLAESRRVDFAKLPRAPLPSRIPFPDLKLDAFLFP 336
Query: 226 NVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGK 284
V + AG+SGG V ++ A G I + RN+D E ++ G+
Sbjct: 337 PVRRRKNNVPAAGTSGGNLYYVLQYFASQHEGATI----QTTRGRNADVLEYSVTSSAGE 392
Query: 285 TLLKFALCYGFQNLQNIVRKVK---------------MRK-------CDYQFVEVMACPS 322
TL K A YGF+N+QN+VRK+K RK ++ +VEVMACP
Sbjct: 393 TLFKAARYYGFRNIQNLVRKLKPARPSRMPGGKPIGSARKPVGKASGPEFSYVEVMACPG 452
Query: 323 GCLNGGGQIK 332
GC NGGGQIK
Sbjct: 453 GCTNGGGQIK 462
>gi|409044980|gb|EKM54461.1| hypothetical protein PHACADRAFT_185384 [Phanerochaete carnosa
HHB-10118-sp]
Length = 609
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 131/377 (34%), Positives = 186/377 (49%), Gaps = 88/377 (23%)
Query: 18 KAVIISLSPQSRASLAEHFG-------ISPLQVFKKLTTF-LKSLGVKSIFDTSCSRDLT 69
K +IS++PQS ASLA +S QV++++ F K LG + ++DT+ +R L
Sbjct: 120 KVPVISIAPQSLASLAASISSSSKAQPVSLQQVYRRVEAFCTKVLGFQHVYDTTFARHLA 179
Query: 70 LIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQ 129
L+E E+ R +R + LPML+SACPGWICY EK +LP+IS KSPQ
Sbjct: 180 LLEHTREYKER---------KRGDGQLPMLASACPGWICYVEKTHAE-MLPFISRTKSPQ 229
Query: 130 QTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEI 189
Q +G +K + K G P +IYHVTVMPCYDKKLEA+R+DF + + +
Sbjct: 230 QVMGTLVKEWLGSKWGKTPSQIYHVTVMPCYDKKLEASRQDFYNDVYATRD--------- 280
Query: 190 PEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTN--VDDEGHLYGVA---------- 237
VD V+TTGE+ +++ K + E D L + + D+ G A
Sbjct: 281 --VDCVITTGELELMMREKDWSLSTPVEGENDDRLPHGFLTDDSRGSGAAKFDGDDLPEL 338
Query: 238 -----GSSGGYAETVFR---HAAKTLFGKVIEGHLEFKTIRNSDFREVAL--EVEGKTLL 287
SSG Y ++ H + + G L + +R D+ E L + G +
Sbjct: 339 ITHPGTSSGSYLHSLINAIVHESPSALG------LNMRAVRAPDYEEYILSEKATGDIVF 392
Query: 288 KFALCYGFQNLQNIVRKV-----------------------KMRKCD--------YQFVE 316
+ A CYGF+NLQN+VRKV +K D Y +VE
Sbjct: 393 RGAKCYGFRNLQNLVRKVGRDAGVQVGRGAAGRAAGVRGRVVRKKADGSAAPETKYDYVE 452
Query: 317 VMACPSGCLNGGGQIKP 333
VMACP GC+NGGGQ++P
Sbjct: 453 VMACPGGCVNGGGQLRP 469
>gi|223558018|gb|ACM91024.1| NADH:ubiquinone oxidoreductase subunit [uncultured bacterium URE4]
Length = 590
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 123/395 (31%), Positives = 196/395 (49%), Gaps = 30/395 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
+ E + + L +I N + ++P R +L E FG+ + K+ LK++G
Sbjct: 210 LAEVDNTGKILRDIANPNVKTCVQVAPAVRVALGEEFGMPAGSIVTGKIAAALKAIGFDY 269
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT S DLT++E E I R K D N +P+++S CP W+ + EK +
Sbjct: 270 VFDTDWSADLTIMEEGTEVIGRLKAYLAGD---KNVKIPVMTSCCPAWVNFYEK-FYPEL 325
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
Y S+ KSPQ GAT+K + K+G + V+VMPC KK E RE+ D
Sbjct: 326 RDYPSTAKSPQGMFGATVKTYFADKIGIPRKNLVCVSVMPCVAKKYECEREELGVNGD-- 383
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
P+V+ +TT E+ LI++ ++F +L ++ D L ++G
Sbjct: 384 -----------PDVNYSITTRELARLIKICNIDFNSLPDAEFDSPLGESTGAAVIFG--- 429
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
++GG E R A + L G+ + ++F+ +R D RE + V G LK A+ YG +N
Sbjct: 430 ATGGVMEAALRTAVEVLTGETLP-RIDFEEVRGLDGVREATIPVPGVADLKVAVVYGLKN 488
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE---NV 354
+ I+ ++K +C Y FVEVMACP GC++G GQ S +I+ E +
Sbjct: 489 ARMIMEQIKAGECPYHFVEVMACPGGCIDGAGQPYHHGDAS---IIRARHAAIYEADRRM 545
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP V+++Y E+ +P SEK+ +HT Y
Sbjct: 546 PLRKSHENPEVQAIYKEFYGEPCSEKSHHLLHTIY 580
>gi|297544314|ref|YP_003676616.1| hydrogenase, Fe-only [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
gi|296842089|gb|ADH60605.1| hydrogenase, Fe-only [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
Length = 581
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 125/391 (31%), Positives = 206/391 (52%), Gaps = 47/391 (12%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K V+ +P R +L E FG+ P+ V K+ LK +G ++FDT + DLT++E +
Sbjct: 224 KYVVAQTAPAVRVALGEEFGM-PIGSIVTGKMVAALKRMGFDAVFDTDFAADLTIMEEGS 282
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
E + R K + LPM++S PGWI + EK +I +S+ KSP +GA
Sbjct: 283 ELLERLK---------NGGKLPMITSCSPGWIAFCEKYYPEFI-DNLSTCKSPHMMMGAL 332
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+K + +K G P++IY V++MPC KKLE R + Q +D VD+V
Sbjct: 333 VKSYYAEKEGLNPEDIYVVSIMPCTAKKLEIERPEM------QHNGIKD-------VDAV 379
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
LTT E+ +I+ ++F L + D+ L G ++G ++GG E R A +
Sbjct: 380 LTTRELARMIKEMGIDFVNLPDEEYDEPLGMSTGAGVIFG---ATGGVMEAALRTVADIV 436
Query: 256 FGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
G+ ++ ++F+ +R + RE ++++G + K A+ G N + ++ K+K + +Y F
Sbjct: 437 EGRELD-KVDFEEVRGLEGVREATIKIDGMDI-KVAIANGTGNAKKLLDKIKAGEVEYHF 494
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE----TIYL--ENVMLADPFKNPLVRSL 368
+EVM CP GC+ GGGQ P +P E+ K E IY +++ + KNP ++ L
Sbjct: 495 IEVMGCPGGCIMGGGQ----PIHNPNEMGKVKELRAKAIYEADKSLPIRKSHKNPAIQKL 550
Query: 369 YDEWLEQPGSEKAKKHVHTEY-----HPVVK 394
Y+E+L P SEK+ +HT Y +P+V+
Sbjct: 551 YEEFLGSPLSEKSHHLLHTHYSKKELYPLVR 581
>gi|339899721|gb|AEK22103.1| FeFe-hydrogenase [uncultured organism]
Length = 572
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 117/379 (30%), Positives = 195/379 (51%), Gaps = 35/379 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
++ K V++ +P +A++ E FG+ P V +L T L+ LG +F T + DLT++E
Sbjct: 224 DEDKFVVVQTAPSIQATIGEEFGMEPGTVVTGQLVTALRMLGFDRVFPTEFTADLTIMEE 283
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
EFIAR + N LP ++S CPGW+ YAE +L ++S+ KSPQQ
Sbjct: 284 GREFIARIQ---------GNKELPHITSCCPGWVKYAEHNYPD-LLDHLSTAKSPQQMFS 333
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
K + Q++G P++I+ V+VMPC KK E RE+ +RD G + + D
Sbjct: 334 TLAKTYYAQQMGIDPEKIFTVSVMPCTAKKFEKNREE-----------HRDSGFQ--DTD 380
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+VLTT E+ +++ ++ L E D ++ + ++ G++GG E R +
Sbjct: 381 AVLTTRELARMLKEVGIDLAHLHEEDWDSLMGSQSGAASIF---GTTGGVTEAALRTVKE 437
Query: 254 TLFGKVIEG-HLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
L G+ ++ L F + +E +E+ G+T K A+ G ++ V+ K D
Sbjct: 438 LLTGEPLDRLDLGFMGV-----KEAEVEIAGRT-YKIAVVSGLAEAARLLDDVRAGKSDL 491
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
++EVMACP GC+ GGGQ P ++ + + L I NV + +NP + LY E+
Sbjct: 492 DWIEVMACPHGCVGGGGQPLPNSRENRAKRAQGLAQIDQHNV-IRKSHENPEIIQLYQEF 550
Query: 373 LEQPGSEKAKKHVHTEYHP 391
L +P +++ + +HT Y P
Sbjct: 551 LHEPLGDRSHELLHTTYQP 569
>gi|289578043|ref|YP_003476670.1| hydrogenase, Fe-only [Thermoanaerobacter italicus Ab9]
gi|289527756|gb|ADD02108.1| hydrogenase, Fe-only [Thermoanaerobacter italicus Ab9]
Length = 581
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 125/391 (31%), Positives = 206/391 (52%), Gaps = 47/391 (12%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K V+ +P R +L E FG+ P+ V K+ LK +G ++FDT + DLT++E +
Sbjct: 224 KYVVAQTAPAVRVALGEEFGM-PIGSIVTGKMVAALKRMGFDAVFDTDFAADLTIMEEGS 282
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
E + R K + LPM++S PGWI + EK +I +S+ KSP +GA
Sbjct: 283 ELLERLK---------NGGKLPMITSCSPGWIAFCEKYYPEFI-DNLSTCKSPHMMMGAL 332
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+K + +K G P++IY V++MPC KKLE R + Q +D VD+V
Sbjct: 333 VKSYYAEKEGLNPEDIYVVSIMPCTAKKLEIERPEM------QHNGIKD-------VDAV 379
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
LTT E+ +I+ ++F L + D+ L G ++G ++GG E R A +
Sbjct: 380 LTTRELARMIKEMGIDFVNLPDEEYDEPLGMSTGAGVIFG---ATGGVMEAALRTVADIV 436
Query: 256 FGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
G+ ++ ++F+ +R + RE ++++G + K A+ G N + ++ K+K + +Y F
Sbjct: 437 EGRELD-KVDFEEVRGLEGVREATIKIDGMDI-KVAIANGTGNAKKLLDKIKAGEVEYHF 494
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE----TIYL--ENVMLADPFKNPLVRSL 368
+EVM CP GC+ GGGQ P +P E+ K E IY +++ + KNP ++ L
Sbjct: 495 IEVMGCPGGCIMGGGQ----PIHNPNEMGKVKELRAKAIYEADKSLPIRKSHKNPAIQKL 550
Query: 369 YDEWLEQPGSEKAKKHVHTEY-----HPVVK 394
Y+E+L P SEK+ +HT Y +P+V+
Sbjct: 551 YEEFLGSPLSEKSHHLLHTHYSKKELYPLVR 581
>gi|408398645|gb|EKJ77774.1| hypothetical protein FPSE_02008 [Fusarium pseudograminearum CS3096]
Length = 575
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 188/361 (52%), Gaps = 60/361 (16%)
Query: 18 KAVIISLSPQSRASLAEH--FGISPLQVFKKLTTFLKSL-GVKS----------IFDTSC 64
K + S+SPQ+RA+LA G+S QV L + GV S + DT+
Sbjct: 118 KLFVASVSPQTRANLAAACGAGVSEAQVGHMLDNLFRGPEGVASGGKYNNEFAWVVDTNT 177
Query: 65 SRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
+R+ TL+ +E + SQ + + + P+L+S+CPGW+CYAEK ++LP+IS
Sbjct: 178 AREATLVLGADEV---HNPSQSTP---ATPAKPILASSCPGWVCYAEKTH-PHVLPHISK 230
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
VKSPQ +G +K + + LG P I+H+ +MPC+DKKLEA+RE+ + ++ E
Sbjct: 231 VKSPQALMGTLLKTTLSRTLGIAPSRIWHLAIMPCFDKKLEASREELTEDVWAEGEI--- 287
Query: 185 EGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGH-------LYGV- 236
G + +VD V+T+ E+L L + + +NF + ++PL K D + H L G
Sbjct: 288 RGRGVRDVDCVITSKEILMLAESRGMNFFNVPKTPLSKSNPFPDPKLHDFLFPRRLPGNP 347
Query: 237 ---AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
AG+SGG + H K+ + + RN D E ++ V G+ + + A Y
Sbjct: 348 PREAGTSGG----LLWHILKSRAAQTPGAEIVHTRGRNVDVAEYSIVVNGEPVFRAARYY 403
Query: 294 GFQNLQNIVRKVKMRK----------------------CDYQFVEVMACPSGCLNGGGQI 331
GF+N+QN+VR++K K +Y +VEVMACP GC NGGGQI
Sbjct: 404 GFRNIQNLVRRLKPAKPSRMPGGKPFGSARKPAGKAGSLEYSYVEVMACPGGCTNGGGQI 463
Query: 332 K 332
K
Sbjct: 464 K 464
>gi|358398690|gb|EHK48041.1| hypothetical protein TRIATDRAFT_81910 [Trichoderma atroviride IMI
206040]
Length = 578
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 123/366 (33%), Positives = 185/366 (50%), Gaps = 68/366 (18%)
Query: 18 KAVIISLSPQSRASLAEHFG--ISPLQVFKKLTTFLKSL-----------GVKSIFDTSC 64
K + S+S Q+RA+LA G +S Q L L+ + + D +
Sbjct: 121 KLFVASVSSQTRANLAAACGREVSESQAGHMLENLLRGPEGLAKGGKWNNSFEWVVDINV 180
Query: 65 SRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
+RD TL E ++ S S P+LSS+CPGW+CYAEK Y+LP++S
Sbjct: 181 ARDATLALGTAEVLSSPTPGV------SAPSTPILSSSCPGWVCYAEKTH-PYVLPHLSK 233
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
VKSPQ +G +K + +KLG P+ I+HV VMPC+DKKLEA+RE+ +E +
Sbjct: 234 VKSPQALMGTILKTTLSRKLGIPPNRIWHVAVMPCFDKKLEASREELT------DEVWAR 287
Query: 185 EGLE---IPEVDSVLTTGEVLDLIQLKAVNFEALEESP--LDKMLTNVDDEGHLY----- 234
GL + +VD V+T+ EVL L + + ++F ++S + + DD+ H +
Sbjct: 288 SGLPGRGVRDVDCVITSKEVLMLAESRGLSFFDFQKSASSVPPSIPFPDDKVHAFLFPKK 347
Query: 235 ------GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLK 288
+AGSSGG + H +T ++ ++ RN+D E ++ V G+ + K
Sbjct: 348 GSRNPSRIAGSSGG----LLHHILQTKAAQIAGSEIQINRGRNADVVEYSVTVNGEPVFK 403
Query: 289 FALCYGFQNLQNIVRKVKMRK----------------------CDYQFVEVMACPSGCLN 326
A YGF+N+QN+VR++K + D+ FVEVMACP GC N
Sbjct: 404 AARYYGFRNIQNLVRRLKPARPSRMPGGKPFGSARRPAGKAASLDFSFVEVMACPGGCTN 463
Query: 327 GGGQIK 332
GGGQIK
Sbjct: 464 GGGQIK 469
>gi|303246230|ref|ZP_07332510.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
gi|302492293|gb|EFL52165.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
Length = 688
Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 188/380 (49%), Gaps = 45/380 (11%)
Query: 20 VIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
V+ ++P R L E FG +P + +L +K++G ++DT+ + DLT+IE EF+
Sbjct: 228 VVAQIAPAVRVGLGECFGAAPGDPIMGRLVAAMKTIGFDQVYDTTFAADLTVIEEAEEFL 287
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
AR + + LP +S CPGW+ +AE Q +LP +SS +SPQQ G+ +K
Sbjct: 288 AR---------KAAGEKLPQFTSCCPGWVQFAE-QYYPELLPNLSSCRSPQQMFGSLVKE 337
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ ++LG ++ V+VMPC KK EA R +F +D P+VD+VLTT
Sbjct: 338 MLPEQLGIPRKKLAIVSVMPCTAKKFEARRPEFA----------KDGS---PDVDNVLTT 384
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ +I+ + F LE D G ++G ++GG E V R+AA+ + G+
Sbjct: 385 QEMARMIEQAGLRFNDLEPQSRDMPYGFGTGAGVIFG---TTGGVTEAVLRYAAEKVTGQ 441
Query: 259 VIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+ +F +R S REV +EV G TL A+ YG N + + K+K CDY +EV
Sbjct: 442 TLY-DTDFNDVRGESGLREVNVEVGGNTL-HLAVVYGLANARVVCEKIKAGTCDYDLIEV 499
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK-------NPLVRSLYD 370
MACP GC+ G GQ P L + + +D + N V Y
Sbjct: 500 MACPGGCVGGAGQ--------PVNLDLAARKRRAQGLYRSDKGRQLHKAQDNVFVNQCYA 551
Query: 371 EWLEQPGSEKAKKHVHTEYH 390
++L G KA + +HT Y
Sbjct: 552 KFLGDVGGHKAHELLHTGYQ 571
>gi|219670623|ref|YP_002461058.1| hydrogenase, Fe-only [Desulfitobacterium hafniense DCB-2]
gi|219540883|gb|ACL22622.1| hydrogenase, Fe-only [Desulfitobacterium hafniense DCB-2]
Length = 527
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 119/395 (30%), Positives = 197/395 (49%), Gaps = 26/395 (6%)
Query: 3 EKQSLDEFLSNINKGK-AVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIF 60
E++ +D+ + K V++ +P +R L E FG+ V K L+ LG IF
Sbjct: 132 EREDIDQVAKALADPKITVVVQTAPATRIGLGEEFGLPVGTNVQGKQVAALRKLGFDVIF 191
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + DLT++E E + R + LP +S CPGW+ + E +LP
Sbjct: 192 DTNFAADLTIMEEGTELVKRITG-------ELHHPLPQFTSCCPGWVKFVEYYY-PELLP 243
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+SS KSPQQ GA +K + +K P +I+ V +MPC KK E R + + S +
Sbjct: 244 NLSSAKSPQQMAGALVKTYFAEKNHVEPQKIFSVAIMPCTAKKFECQRPEMI----SAQT 299
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
++DE + P+VD VLTT E+ +I+ ++ +L + D+++ G ++ G++
Sbjct: 300 YWQDEQVS-PDVDVVLTTRELARMIKRAGIDLPSLPDEEYDQLMGVATGAGAIF---GTT 355
Query: 241 GGYAETVFRHAAKTLFGKVIEGHL-EFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNL 298
GG E R A + G+ L + +R + +E A+ + G ++ A+ G N
Sbjct: 356 GGVMEAAVRSAYYLVTGEQPPAALWQLTPVRGMEGVKEAAVSIPGAGEIRIAVISGLDNA 415
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV---- 354
+ I+ +VK + F+EVMACP GC GGGQ P+ P + ++ L +
Sbjct: 416 RAIMEQVKAGNSPWTFIEVMACPGGCQYGGGQ--PRSSAPPSDGVRNTRAASLYKIDAQA 473
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L + NP ++ +Y E+L P SEKA++ +HT Y
Sbjct: 474 KLRNSHDNPQIKQVYAEFLTSPLSEKAEELLHTHY 508
>gi|342879391|gb|EGU80642.1| hypothetical protein FOXB_08865 [Fusarium oxysporum Fo5176]
Length = 576
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 122/363 (33%), Positives = 189/363 (52%), Gaps = 62/363 (17%)
Query: 18 KAVIISLSPQSRASLAEHFG--ISPLQVFKKLTTFLKS-LGVKS----------IFDTSC 64
K ++S+SPQ+RA+LA G +S L + G+ S + DT+
Sbjct: 118 KLFVVSVSPQTRANLAAACGGGVSEGDAGHMLDNLFRGPSGIASGGKYHNEFTWVVDTNT 177
Query: 65 SRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
+R+ TL+ +E + S E + + P+L+S+CPGW+CYAEK ++LP+IS
Sbjct: 178 AREATLVLGADEVLG------TSQTETATPAKPILASSCPGWVCYAEKTH-PHVLPHISK 230
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
VKSPQ +G +K + + LG P I+H+ VMPC+DKKLEA+RE+ ++ ++ ET
Sbjct: 231 VKSPQALMGTLLKTTLSRTLGIAPGRIWHLAVMPCFDKKLEASREELTEEVWAEGET--- 287
Query: 185 EGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL-DKMLTNVDD------------EG 231
G + +VD V+T+ E+L L + + ++F + ++PL K LT D G
Sbjct: 288 RGRGVRDVDCVITSKEILMLAESRGLSFFNIPKTPLQSKSLTPFPDPKLHEFLFPRIRTG 347
Query: 232 HLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFAL 291
+ AG+SGG + H K+ + + RN D E ++ V G+ + + A
Sbjct: 348 NAPREAGTSGG----LLYHILKSRAAQTPGAEIVHTRGRNVDVAEYSILVNGEPVFRAAR 403
Query: 292 CYGFQNLQNIVRKVK---------------MRK-------CDYQFVEVMACPSGCLNGGG 329
YGF+N+QN+VR++K RK +Y +VEVMACP GC NGGG
Sbjct: 404 YYGFRNIQNLVRRLKPARPSRMPGGKPFGSARKPAGKAASLEYSYVEVMACPGGCTNGGG 463
Query: 330 QIK 332
QIK
Sbjct: 464 QIK 466
>gi|255947558|ref|XP_002564546.1| Pc22g05110 [Penicillium chrysogenum Wisconsin 54-1255]
gi|259511270|sp|B6HUC4.1|NAR1_PENCW RecName: Full=Cytosolic Fe-S cluster assembly factor nar1; AltName:
Full=Nuclear architecture-related protein 1
gi|211591563|emb|CAP97799.1| Pc22g05110 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 604
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 126/377 (33%), Positives = 174/377 (46%), Gaps = 65/377 (17%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-----------GVKSIFDTSC 64
+GK + S+SPQ RASLA +GIS + + L G + DT+
Sbjct: 114 EGKIFVASVSPQVRASLATTYGISEKEAGYMIDQLLSGPQGLRGGGKHGNGFTWVVDTNA 173
Query: 65 SRDLTLIEACNEFIARYKQSQESDDERSNSSLP---MLSSACPGWICYAEKQLGSYILPY 121
R+ L+ +E + S +S+ SLP +LSSACPGWICYAEK +ILP+
Sbjct: 174 MREAVLVLTADEVSDSLNSGESSAMSQSDDSLPKRPILSSACPGWICYAEKT-HPFILPH 232
Query: 122 ISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEET 181
+S +KSPQ G +K + + LG P I+H+ VMPC+DKKLEA+RE+ Q ++
Sbjct: 233 LSRLKSPQALSGTFLKTVLSKSLGVHPSRIWHLAVMPCFDKKLEASREELTDMSWRQGDS 292
Query: 182 YRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP-------------LDKMLTNVD 228
E + +VD V+T E+L L + + L P LD L+
Sbjct: 293 SGSESQPVRDVDCVITARELLSLASSRGSSLRDLPLQPLHSSFNPPFPEKTLDSFLSLKR 352
Query: 229 DEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE-VALEVEGKTLL 287
G+SGGY H T + L RN D E V + EG+ +L
Sbjct: 353 SRAEQSLATGTSGGY----LHHVLMTFQARNPGSELVVNRGRNVDVVEYVLMSPEGQPIL 408
Query: 288 KFALCYGFQNLQNIVRKVKMRKC--------------------------------DYQFV 315
K A YGF+N+QN+VRK+K + DY +V
Sbjct: 409 KAARYYGFRNIQNLVRKLKPARVSRLPGAKPAVRPAAGRRQPMSRNAVSTGSSGSDYAYV 468
Query: 316 EVMACPSGCLNGGGQIK 332
EVMACP GC NGGGQI+
Sbjct: 469 EVMACPGGCTNGGGQIR 485
>gi|89897458|ref|YP_520945.1| hydrogenase large subunit [Desulfitobacterium hafniense Y51]
gi|89336906|dbj|BAE86501.1| putative hydrogenase large subunit [Desulfitobacterium hafniense
Y51]
Length = 555
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/395 (30%), Positives = 197/395 (49%), Gaps = 26/395 (6%)
Query: 3 EKQSLDEFLSNINKGK-AVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIF 60
E++ +D+ + K V++ +P +R L E FG+ V K L+ LG IF
Sbjct: 160 EREDIDQVAKALADPKITVVVQTAPATRIGLGEEFGLPVGTNVQGKQVAALRKLGFDVIF 219
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + DLT++E E + R + LP +S CPGW+ + E +LP
Sbjct: 220 DTNFAADLTIMEEGTELVKRITG-------ELHHPLPQFTSCCPGWVKFVEYYY-PELLP 271
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+SS KSPQQ GA +K + +K P +I+ V +MPC KK E R + + S +
Sbjct: 272 NLSSAKSPQQMAGALVKTYFAEKNHVEPQKIFSVAIMPCTAKKFECQRPEMI----SAQT 327
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
++DE + P+VD VLTT E+ +I+ ++ +L + D+++ G ++ G++
Sbjct: 328 YWQDEQVS-PDVDVVLTTRELARMIKRAGIDLPSLPDEEYDQLMGVATGAGAIF---GTT 383
Query: 241 GGYAETVFRHAAKTLFGKVIEGHL-EFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNL 298
GG E R A + G+ L + +R + +E A+ + G ++ A+ G N
Sbjct: 384 GGVMEAAVRSAYYLVTGEQPPAALWQLTPVRGMEGVKEAAVSIPGAGEIRIAVISGLDNA 443
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV---- 354
+ I+ +VK + F+EVMACP GC GGGQ P+ P + ++ L +
Sbjct: 444 RAIMEQVKAGNSPWTFIEVMACPGGCQYGGGQ--PRSSAPPSDGVRNTRAASLYKIDAQA 501
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L + NP ++ +Y E+L P SEKA++ +HT Y
Sbjct: 502 KLRNSHDNPQIKQVYAEFLTAPLSEKAEELLHTHY 536
>gi|258513524|ref|YP_003189746.1| hydrogenase, Fe-only [Desulfotomaculum acetoxidans DSM 771]
gi|257777229|gb|ACV61123.1| hydrogenase, Fe-only [Desulfotomaculum acetoxidans DSM 771]
Length = 513
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/386 (31%), Positives = 191/386 (49%), Gaps = 41/386 (10%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+ GK V++ +P +R +L E FG+ P V + L+ LG IFDT+ + DLT++E
Sbjct: 143 DPGKVVVVQTAPATRVALGEEFGLEPGAWVMGQQVAALRRLGFDVIFDTNFTADLTIMEE 202
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP----YISSVKSPQ 129
E I R K + LP +S CPGWI + E Y P +S+ KSPQ
Sbjct: 203 ATELIRRVKGDLKK-------PLPQFTSCCPGWIKFCE-----YFYPDLFLNLSTCKSPQ 250
Query: 130 QTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEI 189
Q +GA +K + ++ G P I+ V +MPC KK EA R + ++ YRD
Sbjct: 251 QMLGALVKTYFAKEKGLNPKNIFSVAIMPCTAKKFEANRSEM------KDSGYRD----- 299
Query: 190 PEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFR 249
VDSVLTT E+ L++ ++ L D ++ ++G ++GG E R
Sbjct: 300 --VDSVLTTRELSRLLKKHNIDLTKLPAENYDPLMGKSTGGAVIFG---ATGGVMEAAVR 354
Query: 250 HAAKTLF-GKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKM 307
A + G L+ +R + +E A+E+ G ++ A+C+G N + I+ +
Sbjct: 355 TAYFFITQSPPPSGLLQLTPVRGLAGVKEAAVEIPGVGRIRVAVCHGMGNAREILEATRK 414
Query: 308 RKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN----VMLADPFKNP 363
+ FVE M CP GC +GGGQ P+ P + I+ L N +++ + +NP
Sbjct: 415 GNAPWHFVEFMCCPGGCQSGGGQ--PRTAVPPSDEIRLKRIASLYNADAKMVMRESHENP 472
Query: 364 LVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ ++Y ++LE P SE A++ +HTEY
Sbjct: 473 DILTIYQKFLEHPMSELAERLLHTEY 498
>gi|389741735|gb|EIM82923.1| iron hydrogenase [Stereum hirsutum FP-91666 SS1]
Length = 690
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 127/365 (34%), Positives = 168/365 (46%), Gaps = 95/365 (26%)
Query: 51 LKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYA 110
+ +LG +FDT+ +R L+L+E EF R KQ+ ++ +PML+SACPGW+CYA
Sbjct: 168 VSTLGFAHVFDTTFARHLSLMEHVREFHDR-KQAADASGTGEGGQIPMLASACPGWVCYA 226
Query: 111 EKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARED 170
EK + +LP+IS KSPQQ +G +K + + G +PDEIYHVTVMPCYDKKLEA+R+D
Sbjct: 227 EKTH-AEMLPFISRTKSPQQVMGTIVKEWLAPQWGKKPDEIYHVTVMPCYDKKLEASRQD 285
Query: 171 FVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDE 230
F + + +VD VLTTGE+ L+Q K + S +
Sbjct: 286 FYNDI-----------YQTRDVDCVLTTGELQLLMQEKGFDLSMPVPSSSSSPSPSEPLL 334
Query: 231 GHLYGVAG-SSGGYAETVFRHAAKTL--------------------------FGKVIEG- 262
L G SSG Y T+ A T G
Sbjct: 335 PRLLQHPGSSSGSYLHTILLDIASTYPSSKSSSTHPQISSASASISPVPSESVGPTPSSL 394
Query: 263 -HLEFKTIRNSDFREVAL--EVEGKTLLKFALCYGFQNLQNIVRKVK------------- 306
HLE KTIR SD+ E L + + K A CYGF+NLQN+VRKV
Sbjct: 395 LHLEAKTIRTSDYEEYILTDTRTSEIIFKAARCYGFRNLQNVVRKVAKSAGVQSGKGAAG 454
Query: 307 ------------------------------MRKCD--------YQFVEVMACPSGCLNGG 328
R+ D Y +VEVMACP GC+NGG
Sbjct: 455 RLGARKAASGAGVRARVKKRAGAAGAGAGLSREGDGVVAADRAYDYVEVMACPGGCVNGG 514
Query: 329 GQIKP 333
GQ++P
Sbjct: 515 GQLRP 519
>gi|398410453|ref|XP_003856577.1| hypothetical protein MYCGRDRAFT_66934 [Zymoseptoria tritici IPO323]
gi|339476462|gb|EGP91553.1| hypothetical protein MYCGRDRAFT_66934 [Zymoseptoria tritici IPO323]
Length = 617
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 125/390 (32%), Positives = 188/390 (48%), Gaps = 82/390 (21%)
Query: 9 EFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFL-KSLGVKS--------- 58
E S +GK + S+SPQ+RASLA + ++ + ++ L LGVKS
Sbjct: 109 EGTSQQEEGKIFVASVSPQARASLAATYNVTEREAGHMISQLLCGPLGVKSGGQNGSGFA 168
Query: 59 -IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+ DT+ R+ +L+ A +E E + P+++SACPGWICYAEK +
Sbjct: 169 WVLDTNAMREASLVAAADEVEESLVTLAEGQKK------PVITSACPGWICYAEKTH-PH 221
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
ILP++S +KSPQ G +K + +K G P ++H+ VMPC+DKKLEA+R + +
Sbjct: 222 ILPHLSKLKSPQALTGVMVKSVLAKKFGIAPQNVWHLAVMPCFDKKLEASRGEL-----T 276
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTN------VDD-- 229
+ +G + +VD V+T E+L L + + ++F AL +SP+ + T ++D
Sbjct: 277 SHSWHGQDGDSVRDVDCVITARELLMLAESRDISFPALPKSPVAREFTPAFPDIVMNDYL 336
Query: 230 -----------EGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 278
E + G+SGGY + + G I+ H RNSD E
Sbjct: 337 FRSPRGQKRKREEGITASIGTSGGYLHHILKTQQARHPGSEIQAHRG----RNSDVAEYT 392
Query: 279 L--EVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-------------------------- 310
L G+T+ + A YGF+N+QN+VR++K K
Sbjct: 393 LVDPTSGETVFRAARYYGFRNIQNLVRRLKPPKASRMPGASRKPGVVRRSAAGTTGSPAS 452
Query: 311 --------DYQFVEVMACPSGCLNGGGQIK 332
DY +VEVMACP GC NGGGQIK
Sbjct: 453 AAASGNGADYAYVEVMACPGGCTNGGGQIK 482
>gi|350638253|gb|EHA26609.1| hypothetical protein ASPNIDRAFT_170479 [Aspergillus niger ATCC
1015]
Length = 597
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 128/376 (34%), Positives = 185/376 (49%), Gaps = 60/376 (15%)
Query: 9 EFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFL-----------KSLGVK 57
E + ++G+ + S+SPQ RASLA +GI+ + + FL G
Sbjct: 107 ELGTASDEGRVFVASVSPQVRASLAATYGITEKEATYMIHQFLSGPHGLRAGGKNGSGFT 166
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL----PMLSSACPGWICYAEKQ 113
+ DT+ R+ L+ +E S +S ++ P+LSSACPGWICYAEK
Sbjct: 167 WVADTNVLREAVLVLTADEVGETLTTSPDSSSTNGATNTLPKRPILSSACPGWICYAEKT 226
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
S++LP++S +KSPQ G K + + LG I+H+ VMPC+DKKLEA+RE+
Sbjct: 227 H-SFVLPHLSRLKSPQALAGTFFKTVLSKSLGIPASRIWHLAVMPCFDKKLEASREELT- 284
Query: 174 QLDSQEETYRDEG-LEIPEVDSVLTTGEVLDL-----IQLKAVNFEALEES---PLDKML 224
D+ + +DEG + +VD V+TT E+L L I L + F++L +S P M
Sbjct: 285 --DASWLSAKDEGHTAVRDVDCVITTREMLSLASSRGISLPNLPFKSLPQSYIPPFPDMT 342
Query: 225 TN----VDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALE 280
N AG+SGGY H +T + + + RN+D E L
Sbjct: 343 LNDFLFSKSSPGQSAAAGTSGGY----LHHVLQTFQARNPGSEIVTQRGRNADVVEYTLM 398
Query: 281 VEGKT-LLKFALCYGFQNLQNIVRKVKMRKC-----------------------DYQFVE 316
+T +LK A YGF+N+QN+VRK+K + DY +VE
Sbjct: 399 SSERTPILKAARYYGFRNIQNLVRKLKPARASRLPGGNRRLPVGRGAASGSSGTDYAYVE 458
Query: 317 VMACPSGCLNGGGQIK 332
VMACP GC NGGGQI+
Sbjct: 459 VMACPGGCTNGGGQIR 474
>gi|402847751|ref|ZP_10896023.1| Periplasmic [Fe] hydrogenase large subunit [Rhodovulum sp. PH10]
gi|402501986|gb|EJW13626.1| Periplasmic [Fe] hydrogenase large subunit [Rhodovulum sp. PH10]
Length = 623
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 187/375 (49%), Gaps = 35/375 (9%)
Query: 21 IISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
++ +P R E FG+ P V ++ T L+ LG + DT+ DL ++E E +
Sbjct: 253 VVQFAPAVRVGFGEEFGLPPGTNVEGQIITALRMLGADIVLDTNWGADLVIMEEGTELLH 312
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
R K+ Q P SS CP WI + E+ I+P +SS KSPQQ +G K +
Sbjct: 313 RLKKKQR----------PTFSSCCPAWINFVERHYPD-IIPMLSSTKSPQQCVGTLAKTY 361
Query: 140 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
+ +K+G P +I ++VMPC KK E AR +PEVD VL+T
Sbjct: 362 LPEKMGIDPKKIRVISVMPCIAKKDEIARRQLSHD-------------GVPEVDVVLSTR 408
Query: 200 EVLDLIQLKAVNFEALEESPLDK-MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E L+Q + ++ ++LE S D ++ G ++G ++GG E R + GK
Sbjct: 409 EFARLLQREHIDLKSLEPSGFDNPYMSEYSGAGAIFG---TTGGVMEAAIRTMYFVVNGK 465
Query: 259 VIEGHLEFKTIRNSDFREVALEVEGKTL--LKFALCYGFQNLQNIVRKVKMRKCDYQFVE 316
+E H+E + +R + A G + +K A+C+G + + IV V+ K D F+E
Sbjct: 466 ELE-HVEIEELRGFEGVRTATVALGGEIGDVKIAMCHGLKPTRQIVELVRSGKSDLDFIE 524
Query: 317 VMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLE 374
+MACP GC++GGG ++ K P L K ET++ + +N V++LY ++L
Sbjct: 525 IMACPGGCVDGGGTLRSKKAYLPHAL-KRRETLFGIDRKKAVRQSHRNEQVQALYRDYLG 583
Query: 375 QPGSEKAKKHVHTEY 389
+P SEKA +HT Y
Sbjct: 584 EPDSEKAHHLLHTWY 598
>gi|423076298|ref|ZP_17065011.1| hydrogenase, Fe-only [Desulfitobacterium hafniense DP7]
gi|361852658|gb|EHL04881.1| hydrogenase, Fe-only [Desulfitobacterium hafniense DP7]
Length = 554
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/395 (30%), Positives = 197/395 (49%), Gaps = 26/395 (6%)
Query: 3 EKQSLDEFLSNINKGK-AVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIF 60
E++ +D+ + K V++ +P +R L E FG+ V K L+ LG IF
Sbjct: 159 EREDIDQVAKALADPKITVVVQTAPATRIGLGEEFGLPVGTNVQGKQVAALRKLGFDVIF 218
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + DLT++E E + R + LP +S CPGW+ + E +LP
Sbjct: 219 DTNFAADLTIMEEGTELVKRITG-------ELHHPLPQFTSCCPGWVKFVEYYY-PELLP 270
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+SS KSPQQ GA +K + +K P +I+ V +MPC KK E R + + S +
Sbjct: 271 NLSSAKSPQQMAGALVKTYFAEKNHVEPQKIFSVAIMPCTAKKFECQRPEMI----SAQT 326
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
++DE + P+VD VLTT E+ +I+ ++ +L + D+++ G ++ G++
Sbjct: 327 YWQDEQVS-PDVDVVLTTRELACMIKRAGIDLPSLPDEEYDQLMGVATGAGAIF---GTT 382
Query: 241 GGYAETVFRHAAKTLFGKVIEGHL-EFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNL 298
GG E R A + G+ L + +R + +E A+ + G ++ A+ G N
Sbjct: 383 GGVMEAAVRSAYYLVTGEQPPAALWQLTPVRGMEGVKEAAVSIPGAGEIRIAVISGLDNA 442
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV---- 354
+ I+ +VK + F+EVMACP GC GGGQ P+ P + ++ L +
Sbjct: 443 RAIMEQVKAGNSPWTFIEVMACPGGCQYGGGQ--PRSSAPPSDGVRNTRAASLYKIDAQA 500
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L + NP ++ +Y E+L P SEKA++ +HT Y
Sbjct: 501 KLRNSHDNPQIKQVYAEFLTAPLSEKAEELLHTHY 535
>gi|338812002|ref|ZP_08624201.1| hydrogenase subunit [Acetonema longum DSM 6540]
gi|337275971|gb|EGO64409.1| hydrogenase subunit [Acetonema longum DSM 6540]
Length = 576
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 126/376 (33%), Positives = 194/376 (51%), Gaps = 31/376 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ +P R +L E G+ Q+ K+ L+ LG +FDT S DLT++E +E
Sbjct: 226 KHVVVQTAPAVRVALGEALGLDAGQIVTGKMVAALRRLGFDKVFDTDFSADLTIMEEGSE 285
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
FI R + LPM++S PGW+ + E +L ++S+ KSPQQ GA +
Sbjct: 286 FIERLTK---------GGKLPMITSCSPGWVNFIELMYPD-LLEHLSTAKSPQQMFGALV 335
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +K G P I V++MPC KK EAAR + + ++D VD VL
Sbjct: 336 KTYYAEKSGISPAGIVSVSIMPCTAKKAEAARTEM------KSNGHQD-------VDYVL 382
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ ++F AL D L G ++G ++GG E R A+T+
Sbjct: 383 TTRELGRMIREAGLDFNALPSEEYDAPLGISTGAGVIFG---ATGGVMEAALRTVAETVT 439
Query: 257 GKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
GK + +EF +R + RE + V G + +K A+ + N + ++ K++ DY F+
Sbjct: 440 GKALP-DIEFHNVRGLTGIREAVVPV-GDSKVKVAVAHTLGNARMLMEKIRAGVADYHFI 497
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQ 375
E+MACP GC+ GGGQ P + ++ I + + + L +NP VR LYD WL +
Sbjct: 498 EIMACPGGCIGGGGQPAPISQEVRQQRINAIYQCD-QAMTLRKSHENPAVRELYDTWLGK 556
Query: 376 PGSEKAKKHVHTEYHP 391
P EK+ K +HT YHP
Sbjct: 557 PLGEKSHKLLHTHYHP 572
>gi|442804403|ref|YP_007372552.1| Fe only hydrogenase 1 [Clostridium stercorarium subsp. stercorarium
DSM 8532]
gi|442740253|gb|AGC67942.1| Fe only hydrogenase 1 [Clostridium stercorarium subsp. stercorarium
DSM 8532]
Length = 587
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 206/398 (51%), Gaps = 36/398 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK S+++ + N V++ +P R ++ E FG+ P+ + K+ LK LG
Sbjct: 206 LREKSSIEKVWDALANPDLHVVVQTAPAVRVAIGEEFGL-PIGTRCTGKMVAALKRLGFD 264
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT DLT++E NE I R K + LPM++S PGWI + E
Sbjct: 265 KVFDTDTGADLTIMEEGNELIQRIK---------NGGKLPMITSCSPGWIKFCEHNYPD- 314
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+L +S+ KSPQ GA +K + +K+G P +I+ V+VMPC KK E R +
Sbjct: 315 LLDNLSTCKSPQNMFGALLKSYYAEKMGIDPSKIFVVSVMPCTAKKFEIQRPELA----- 369
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
P+VD +TT E+ +I+ ++F L + D + G ++G
Sbjct: 370 --------STGYPDVDVSITTRELARMIKEAGIDFVNLPDEEFDDPMGEASGAGVIFG-- 419
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-LEVEGKTLLKFALCYGFQ 296
++GG E R L G+ + ++E+K +R + +VA + + ++ A+ +G
Sbjct: 420 -ATGGVMEAALRTVVDKLTGRDND-NIEYKEVRGEEGIKVAEVTLPDGMTIRAAVAHGLG 477
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPKEL-IKTLETIYLEN- 353
N + ++ +V+ + Y F+E+MACP GC+NGGGQ I+P ++ ++ + + +Y E+
Sbjct: 478 NARKLLDQVRNGEAQYHFIEIMACPGGCVNGGGQPIQPARVRNTIDIRTERAKGLYSEDE 537
Query: 354 -VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
+ + KNP ++ +Y+E+L +PGS KA + +HT Y+
Sbjct: 538 AMTIRKSHKNPRIQKIYEEFLGEPGSHKAHELLHTHYY 575
>gi|375086547|ref|ZP_09732953.1| hydrogenase, Fe-only [Megamonas funiformis YIT 11815]
gi|374564686|gb|EHR35968.1| hydrogenase, Fe-only [Megamonas funiformis YIT 11815]
Length = 580
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 129/395 (32%), Positives = 202/395 (51%), Gaps = 36/395 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVF-KKLTTFLKSLGVKS 58
++EK D L I + K VI+ +P R +L + FG+ + KK+ T L+ +G
Sbjct: 207 LVEKDDTDRVLDAIFDPNKTVIVQTAPSVRIALGDEFGMPKGSIVTKKMVTALRMIGFDK 266
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ DLT+ E NE I R K S +PM +S CPGW+ Y EK +
Sbjct: 267 VFDTNYGADLTITEEANELIERIK---------SGKKMPMATSCCPGWVNYMEKHYPD-L 316
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L ++S+ KSP Q A K H ++ P I+ V +MPC KK E R + D +
Sbjct: 317 LDHLSTTKSPMQIFSAITKTHYAKQENLDPKNIFTVAIMPCIAKKYEITRPEMAH--DGR 374
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
P+ D+VLTT E++ LI+ ++FE L ES D + ++G
Sbjct: 375 -----------PDTDAVLTTRELIKLIKYIGIDFENLPESEFDNPMGTATGAAAIFG--- 420
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
++GG E R + L G+ ++ ++E+ +R D +E + + KT+ A+ + N
Sbjct: 421 ATGGVMEAALRTTYEWLTGEEMK-NVEYTPVRGFDGIKEAQINIGDKTI-NIAVAHTLNN 478
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVM 355
+ ++ K++ +C Y F+EVMACP GCL GGGQ G + + K +E+IY +N
Sbjct: 479 AKILMDKLRAGECKYDFIEVMACPGGCLGGGGQ---PIGTTMEVNKKRMESIYQIDKNTK 535
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
+NP ++ LY ++LE+PGSE A K +HT Y
Sbjct: 536 YRKSHENPYLKQLYKDFLEKPGSEIAHKLLHTHYQ 570
>gi|397904027|ref|ZP_10504958.1| Periplasmic [Fe] hydrogenase large subunit [Caloramator australicus
RC3]
gi|343178773|emb|CCC57857.1| Periplasmic [Fe] hydrogenase large subunit [Caloramator australicus
RC3]
Length = 577
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 124/395 (31%), Positives = 201/395 (50%), Gaps = 37/395 (9%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSI 59
EK+++ E I N K V++ +P R +L E FG+ P+ +V K+ L+ LG +
Sbjct: 206 EKENIKEVWMAISNPEKFVVVQTAPAVRVALGEEFGM-PIGTRVTGKMVAALRRLGFDKV 264
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
FDT DLT++E E + R + + LP+++S CPGW+ + E +
Sbjct: 265 FDTDFGADLTIMEEGTELLNRLNKGER---------LPLMTSCCPGWVKFVEHYY-PEMT 314
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
+S+ KSP + GA IK + +K+G P I V++MPC KK E RE+
Sbjct: 315 ENLSTCKSPSEMEGALIKTYFAEKMGIDPKNIVTVSIMPCVGKKFEGQREELSHN----- 369
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS 239
GL+ +VD VLTT E+ +I+ ++F L + D G ++G +
Sbjct: 370 ------GLQ--DVDYVLTTRELAQMIKEAGIDFVNLPDEEFDNPFGESTGAGVIFG---A 418
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNL 298
+GG E R + + GK +E ++E +R + +E +E+ GK ++K A+ +G N
Sbjct: 419 TGGVTEAALRTIYEIVTGKELE-NIEITAVRGVEGIKEAEIELNGK-VVKAAIAHGLANA 476
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ--IKPKPGQSPKELIKTLETIYLENVML 356
+ ++ VK + Y F+EVMACP GC+ GGGQ + K + ++ + IY E+ L
Sbjct: 477 RRVLEMVKSGEKHYDFIEVMACPGGCVTGGGQPIVDAKTRERVDVRVERAKAIYEEDRHL 536
Query: 357 A--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
KNP V LY+E+L +P S K+ + +HT Y
Sbjct: 537 PIRKSHKNPYVIRLYEEFLGEPNSHKSHELLHTHY 571
>gi|297616331|ref|YP_003701490.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680]
gi|297144168|gb|ADI00925.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680]
Length = 574
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 127/397 (31%), Positives = 212/397 (53%), Gaps = 42/397 (10%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS----PLQVFKKLTTFLKSLGVK 57
EK+ +DEFL+ + + K V+ ++P R ++ E G++ P++VF L+ +G
Sbjct: 206 EKEQIDEFLAAVADPDKIVVTQIAPAVRTAIGEEVGMATGEMPMEVF---VAGLRQIGFD 262
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+ T+ + DLT++E NE + R K+ LPM +S PGWI + E
Sbjct: 263 YVLHTNFTADLTIMEEGNELLKRLKE---------GGKLPMFTSCSPGWINFCET-FYPD 312
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+L ++S+ KSPQQ GA +K + QK+G P +IY V++MPC KK EA+R +
Sbjct: 313 LLEHLSTCKSPQQMFGALVKTYWAQKMGIDPSKIYSVSIMPCTAKKFEASRPEM------ 366
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
++ YRD VD VLTT EV L ++ ++F+ L S D + ++
Sbjct: 367 KDSGYRD-------VDLVLTTREVGRLFRMAGIDFKTLTPSKFDSWMGAYTGAAVIF--- 416
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQ 296
G++GG E R + + GK +E + F R + +E ++++G T +K A+ +G
Sbjct: 417 GATGGVMEAALRTVYEVVTGKTLE-DVNFTFARGMEGIKEAEIDLDG-TKVKVAIGHGLA 474
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--V 354
N + ++ +V+ + Y F+E+MACP GC+ GGGQ K E I ++IY+E+ +
Sbjct: 475 NARKLMDQVRAGQSPYHFIEIMACPGGCIGGGGQPLTKTNAKRAERI---DSIYVEDESL 531
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
+ +NP V+ LY+E+L +P K+ + +HT YHP
Sbjct: 532 PIRKSHENPEVKILYEEFLHEPLGHKSHELLHTHYHP 568
>gi|302875113|ref|YP_003843746.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B]
gi|307690261|ref|ZP_07632707.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B]
gi|302577970|gb|ADL51982.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B]
Length = 579
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 129/382 (33%), Positives = 203/382 (53%), Gaps = 46/382 (12%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI+ +P RA+L E FG+ P V K+ + LK+LG K ++DT + DLT++E NE
Sbjct: 229 KYVIVQTAPAIRAALGEQFGLKPGTNVTGKMVSVLKALGFKKVYDTDFAADLTIMEEANE 288
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI-LPYISSVKSPQQTIGAT 135
+ R K +N LP+L+S CPGWI + E G ++ LP SS KSPQQ GA
Sbjct: 289 LVNRIK---------NNKDLPLLTSCCPGWIKFLEHNYGEFLNLP--SSCKSPQQMFGAI 337
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
K ++ +KLG P ++ V++MPC KK EA+R++ ++D I +VD V
Sbjct: 338 AKSYLAEKLGVDPKKMVVVSIMPCTAKKFEASRKE--MEVDG-----------IRDVDIV 384
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA---GSSGGYAETVFRHAA 252
LTT E+ +I+ ++ E+ D L G G A G+SGG E R A
Sbjct: 385 LTTRELSSMIRSAGLDLNDFEDDDFDNPL------GESTGAAVIFGNSGGVMEAALRTAY 438
Query: 253 KTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ + + +E ++F+ +R D + A G LK A+ G N + ++ +K + Y
Sbjct: 439 ELITDQKLE-KIDFQAVRGLDGIKSATIKIGDLDLKIAVASGLGNARKLMESIKNGENQY 497
Query: 313 QFVEVMACPSGCLNGGGQIKPKPG-QSPKELIKTLETIYLENV----MLADPFKNPLVRS 367
+E+MACP GC++GGGQ P + +E++K T L NV + ++P+++
Sbjct: 498 AAIEIMACPGGCIDGGGQ----PFIRGDREILKK-RTAVLYNVDEGKDIRKSHESPIIKE 552
Query: 368 LYDEWLEQPGSEKAKKHVHTEY 389
+Y+++L + EKA K +HT Y
Sbjct: 553 IYNKYLIEANGEKAHKLLHTHY 574
>gi|403388213|ref|ZP_10930270.1| hydrogenase, Fe-only [Clostridium sp. JC122]
Length = 460
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 128/382 (33%), Positives = 192/382 (50%), Gaps = 49/382 (12%)
Query: 21 IISLSPQSRASLAEHFGISPLQVF-KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
I+ +P R +LAE FG+ + KL LK L ++DT+ + DLT++E +E I
Sbjct: 108 IVQCAPAVRVALAEEFGMEFGALTPGKLAKALKVLNFDRVYDTNFAADLTIMEEGSELIE 167
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
R + +LPM +S CP W+ +AE +L ++SS KSPQQ G K +
Sbjct: 168 RVT---------TGKNLPMFTSCCPAWVKFAEDTYPE-LLNHLSSCKSPQQMAGVLFKTY 217
Query: 140 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
+ P +IY V VMPC K+ E RE+ YRD VD V+TT
Sbjct: 218 GAKIDKVEPSKIYSVAVMPCTCKQFECDREEM------NSSGYRD-------VDCVITTR 264
Query: 200 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV 259
E+ LI+ ++F LEE D L G+++G ++GG E R + + K
Sbjct: 265 ELAHLIKESGIDFANLEEDTFDTPLGTYSGAGNIFG---ATGGVMEAAIRTGYELISKKS 321
Query: 260 IEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVM 318
I LE IR S+ R ++V+G L K A+ G +++ ++ VK+ KCDY FVEVM
Sbjct: 322 IP-KLELNFIRGSEGIRTATVDVDGLEL-KVAVVSGLKHVSKVMEDVKLGKCDYHFVEVM 379
Query: 319 ACPSGCLNGGGQIKPKPGQSPKELI---------KTLETIYLENVMLA--DPFKNPLVRS 367
CP GC++GGGQ PK L+ K E++Y + L +NP ++
Sbjct: 380 TCPDGCVSGGGQ--------PKLLLEEYRQVAYKKRKESLYNHDSALKIRKSHENPDIKK 431
Query: 368 LYDEWLEQPGSEKAKKHVHTEY 389
+YDE+LE+P K+ + +HT+Y
Sbjct: 432 IYDEFLEKPLGHKSHELLHTKY 453
>gi|337286723|ref|YP_004626196.1| hydrogenase, Fe-only [Thermodesulfatator indicus DSM 15286]
gi|335359551|gb|AEH45232.1| hydrogenase, Fe-only [Thermodesulfatator indicus DSM 15286]
Length = 510
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 122/379 (32%), Positives = 203/379 (53%), Gaps = 31/379 (8%)
Query: 20 VIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
V++ +P R ++ E FG+ P + + +L L+ LG ++FDT+ + DLT++E EF+
Sbjct: 147 VVVQTAPAVRVAIGEEFGLPPGEWEEGQLVAALRRLGFDAVFDTNFAADLTIMEEATEFV 206
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R +++ LPM +S CPGW+ +AE +L ++SS KSPQQ +GA K
Sbjct: 207 KRVVYAEKP--------LPMFTSCCPGWVKFAE-YFYPELLSHLSSCKSPQQMLGAVAKT 257
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ ++ G P +I + VMPC KK EA R ++ + E + +E + +VD VLT
Sbjct: 258 YYAKERGIDPSKIISIAVMPCTAKKFEAQRP----EMKAAAEYWHNEEI-TADVDLVLTV 312
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ +++ K ++ AL E D +L ++GV +GG E R A L G+
Sbjct: 313 RELARMLKAKNIDLLALPEEDYDPILGEDTGAARIFGV---TGGVMEAAVRTAYYFLTGE 369
Query: 259 -VIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVE 316
+ LEF +R D +E +L + G T + A+ G N++N+ V + F+E
Sbjct: 370 DPPDTLLEFTPVRGLDDVKEASLNINGAT-INIAVVNGLANVRNVCEIVMDNPNKWHFIE 428
Query: 317 VMACPSGCLNGGGQIKPKPGQSPKELIK--TLETIY----LENVMLADPFKNPLVRSLYD 370
VMAC GC++GGGQ P+ P + I+ +E++Y L + L+ + N VR+LY+
Sbjct: 429 VMACRGGCISGGGQ--PRTEVPPTDEIRLARIESLYTSDELSQIRLS--YLNEEVRALYE 484
Query: 371 EWLEQPGSEKAKKHVHTEY 389
++L +P E A++ +HT Y
Sbjct: 485 KFLGEPNGELAEELLHTHY 503
>gi|402224205|gb|EJU04268.1| iron hydrogenase [Dacryopinax sp. DJM-731 SS1]
Length = 602
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 173/330 (52%), Gaps = 57/330 (17%)
Query: 44 FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYK-QSQESDDERSNSSLPMLSSA 102
+++ LG +DT+ +R + +E EF R + + Q + E + LPML+SA
Sbjct: 145 LHRISQLASQLGFFRTYDTTFARHIAHLEQAVEFSERAEAKRQGNGGEGAEERLPMLASA 204
Query: 103 CPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDK 162
CPGW+CYAEK G +LP++S VKSPQQ +G +K + + G P++IYHVTVMPCYDK
Sbjct: 205 CPGWVCYAEKTHGE-MLPFMSRVKSPQQIMGTLVKEWLGSQWGASPEQIYHVTVMPCYDK 263
Query: 163 KLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK 222
KLEA+R+DF +++ + RD VD VLTTGE+ L++ K F+ + +P +
Sbjct: 264 KLEASRQDFY----NEQYSTRD-------VDCVLTTGELALLLREK--GFDLSQPAPSES 310
Query: 223 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEV 281
+ + + +SG Y ++ + K++ LE +R S D+ E L+
Sbjct: 311 FAADYEIPSFVPHPGSTSGSYLHSLIHSIVTSSSTKLV---LETCAVRGSADYVEYTLKP 367
Query: 282 E-------GKTLLKFALCYGFQNLQNIVRKV-----------------------KMRKC- 310
+ + + A CYGF+NLQN+VRKV ++R
Sbjct: 368 AQTEEAGPSQPVFRAATCYGFRNLQNLVRKVARDAGVVTGKGALGRLPGATARRRLRPGA 427
Query: 311 -------DYQFVEVMACPSGCLNGGGQIKP 333
Y FVEVMACP GC+NGGGQ+KP
Sbjct: 428 TTTEGDNAYDFVEVMACPGGCVNGGGQMKP 457
>gi|330924151|ref|XP_003300539.1| hypothetical protein PTT_11788 [Pyrenophora teres f. teres 0-1]
gi|311325313|gb|EFQ91365.1| hypothetical protein PTT_11788 [Pyrenophora teres f. teres 0-1]
Length = 628
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 124/380 (32%), Positives = 183/380 (48%), Gaps = 75/380 (19%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS----------IFDTSC 64
+GK + S+SPQ+RASLA F +S ++ ++ L G++S + DT+
Sbjct: 127 EGKLFVASVSPQARASLAAVFDVSEVEAGNMISQLLSGPSGLRSGGQQKSGFTWVIDTNA 186
Query: 65 SRDLTLIEACNEFIAR-----YKQSQESDDE---RSNSSLPMLSSACPGWICYAEKQLGS 116
R+ L+ A +E K S + E + P+L+SACPGWICYAEK
Sbjct: 187 MREACLVAAADEVTKALAPEAVKASPKPGSEGAIDTTPKAPILTSACPGWICYAEKTH-P 245
Query: 117 YILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL- 175
Y+LP++S +KSPQ G IK + ++ P +I+H+ +MPC+DKKLEA+R +
Sbjct: 246 YVLPHLSRLKSPQALTGTLIKSVLSERYNVPPSQIWHLAIMPCFDKKLEASRGELTSAAW 305
Query: 176 ----DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL-------------EES 218
DS +E RD D V+T E+L L + +NF +L +S
Sbjct: 306 LPSHDSTQEKIRD-------TDCVITARELLHLAAARGINFASLPRASLPSADRTPFPDS 358
Query: 219 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 278
LD L + +AG SGGY H +T K + RN+D E +
Sbjct: 359 KLDAFLFPPSRRKNQSALAGPSGGY----LYHILQTYQAKNPGSSILVVRGRNADVVEYS 414
Query: 279 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC--------------------------DY 312
+ + +T++K A YGF+N+QN+VR++K K DY
Sbjct: 415 VVRDSETIIKAARFYGFRNIQNLVRRLKPAKASRLPGGKTGVSRRPGGVGAAAGEGVKDY 474
Query: 313 QFVEVMACPSGCLNGGGQIK 332
+VEVMACP GC NGGGQ+K
Sbjct: 475 AYVEVMACPGGCTNGGGQVK 494
>gi|260892206|ref|YP_003238303.1| hydrogenase, Fe-only [Ammonifex degensii KC4]
gi|260864347|gb|ACX51453.1| hydrogenase, Fe-only [Ammonifex degensii KC4]
Length = 549
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 118/385 (30%), Positives = 196/385 (50%), Gaps = 24/385 (6%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+ K V++ +P R +L E FG+ P V K+ L+ LG ++ DT+ + DLT++E
Sbjct: 148 DPNKFVVVQTAPSIRVALGEEFGMPPGTWVAGKMVAALRRLGFNAVLDTNFAADLTIMEE 207
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
E I R K E LP +S PGW+ + E ++P++SS KSPQQ G
Sbjct: 208 ATELIKRIK------GELPGRPLPQFTSCSPGWVKFCE-YFYPDLIPHLSSCKSPQQMFG 260
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE-- 191
AT+K + +K G P +I V++MPC KK EA R + + S ++ + + +I E
Sbjct: 261 ATVKTYYAEKRGIDPRKIVSVSIMPCTAKKFEAQRPEMI----SAKKYWEKKDPKIAEGV 316
Query: 192 ---VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVF 248
VD VLTT E+ LI+ ++F L + D ++ ++ G+SGG E
Sbjct: 317 TRDVDIVLTTRELAKLIKQAKIDFPRLPDEDFDPLMGKCTGGAIIF---GASGGVMEAAI 373
Query: 249 RHAAKTLFGK-VIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVK 306
R A + GK + L+ K +R + +E A+++ G ++ A+C G + ++ V+
Sbjct: 374 RTAYFFITGKEPPQQLLDLKPVRGLASVKEAAVDIPGAGTIRVAVCQGMAASRQVLDIVR 433
Query: 307 MRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV--MLADPFKNPL 364
K + FVE MACP GC +GGGQ + Q+ + K ++Y + + + +NP
Sbjct: 434 AGKAPWHFVEFMACPGGCESGGGQPRSSVPQANEVRAKRTASLYAADARWVWRESHENPD 493
Query: 365 VRSLYDEWLEQPGSEKAKKHVHTEY 389
+ +Y ++ P SE A++ +HT Y
Sbjct: 494 ILKVYQDFYGHPMSELAEELLHTHY 518
>gi|451992264|gb|EMD84772.1| hypothetical protein COCHEDRAFT_1199291 [Cochliobolus
heterostrophus C5]
gi|451999226|gb|EMD91689.1| hypothetical protein COCHEDRAFT_1175901 [Cochliobolus
heterostrophus C5]
Length = 621
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 124/379 (32%), Positives = 184/379 (48%), Gaps = 74/379 (19%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFL------KSLGVKS-----IFDTSC 64
+GK + S+SPQ+RASLA F IS ++ ++ L ++ G K + DT+
Sbjct: 129 EGKLFVASVSPQTRASLAAVFNISEVEAGNMISQLLSGPNGLRTGGDKGSDFTWVLDTNA 188
Query: 65 SRDLTLIEACNEFI-----ARYKQSQESDDERSNSSLP---MLSSACPGWICYAEKQLGS 116
R+ L+ A +E A K S + E + ++P +L+SACPGWICYAEK
Sbjct: 189 MREACLVAAADEVTNALSPAAAKASPQPGSEGAIDTIPKAPILTSACPGWICYAEKTH-P 247
Query: 117 YILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARED-----F 171
Y+LP++S +KSPQ G IK + ++ P +I+H+ +MPC+DKKLEA+R + +
Sbjct: 248 YVLPHLSRLKSPQALTGTLIKSVLSERYHVHPSQIWHLAIMPCFDKKLEASRGELTSAAW 307
Query: 172 VFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP------------ 219
+ + EE RD D V+T E+L L + +NF L SP
Sbjct: 308 LPSYNQSEEKIRD-------TDCVITARELLHLAAARGINFVNLPRSPLSQSDRIPFPDP 360
Query: 220 -LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 278
LD L + AG SGGY H +T + + RN+D E +
Sbjct: 361 KLDAFLFPSSRRKNQSVAAGPSGGY----LYHILQTYQARNPGSSISVVRGRNADVVEYS 416
Query: 279 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-------------------------DYQ 313
+ +T++K A YGF+N+QN+VR++K + DY
Sbjct: 417 VVQGSETIIKAARFYGFRNIQNLVRRLKPARASRLPGGKTGVSRKPGGTGAAGEGVKDYA 476
Query: 314 FVEVMACPSGCLNGGGQIK 332
+VEVMACP GC NGGGQ+K
Sbjct: 477 YVEVMACPGGCTNGGGQVK 495
>gi|334341940|ref|YP_004546920.1| hydrogenase Fe-only [Desulfotomaculum ruminis DSM 2154]
gi|334093294|gb|AEG61634.1| hydrogenase, Fe-only [Desulfotomaculum ruminis DSM 2154]
Length = 519
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 204/411 (49%), Gaps = 28/411 (6%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKS 58
+ E+ +D+ + + NK V++ +P +R L E FG++P V K LK LG +
Sbjct: 127 ITERDDIDKVIKALENKDMHVVVQTAPATRVGLGEEFGMAPGTFVEGKQVAALKKLGFDA 186
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT+ E E I R + LP +S PGW+ + E +
Sbjct: 187 VFDTNFSADLTIFEEGTELIKRVTGEIKE-------PLPQFTSCSPGWVKFCE-YFYPDL 238
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L ++S+ KSPQQ +GA IK + ++ G P++I+ V++MPC KK EAAR +++S
Sbjct: 239 LEHMSTCKSPQQMLGAMIKTYYAKEKGINPEKIFSVSIMPCTAKKFEAARP----EMNSA 294
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
E L +VD VLTT E+ LI++K ++ L E+ D ++ G ++ G
Sbjct: 295 GEYAGKPNLR--DVDVVLTTRELARLIKMKNIDLNTLPEAKYDSLMGESTGAGLIF---G 349
Query: 239 SSGGYAETVFRHAAKTLFGK-VIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQ 296
++GG E R A + + E L +R +E +++ G ++ A+ +G
Sbjct: 350 ATGGVMEAAIRSAYFLITKQEPPEALLNLTPVRGLPGIKEAGVDIPGVGTVRVAVAHGLS 409
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV-- 354
N + I+ V+ + Y F+E M CP GC++GGGQ P+ P + ++ L N
Sbjct: 410 NARPILEAVRKGESPYHFIEFMCCPGGCISGGGQ--PRTSLPPSDEVRKARIASLYNADA 467
Query: 355 ---MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHN 402
+N V +LY+++LE P S A + +HT Y K +T + N
Sbjct: 468 HVYAKRKSHENKEVLALYEKFLEHPNSHLAHELLHTHYEDRSKHLTVKKQN 518
>gi|169335143|ref|ZP_02862336.1| hypothetical protein ANASTE_01550 [Anaerofustis stercorihominis DSM
17244]
gi|169257881|gb|EDS71847.1| hydrogenase, Fe-only [Anaerofustis stercorihominis DSM 17244]
Length = 581
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 125/399 (31%), Positives = 199/399 (49%), Gaps = 39/399 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKS 58
+ EK ++DE + ++ K V++ +P RA+L E FG V K+ ++ LG
Sbjct: 203 LTEKVNVDEVWEALSDENKHVVVQPAPAVRAALGEEFGYEIGTDVTGKMVASMRRLGFDK 262
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT D+T++E E + R +LPM++S CP W+ E++ +
Sbjct: 263 VFDTDFGADMTIMEEAYELVDRVTNG---------GTLPMVTSCCPAWVKMCEQEY-PEL 312
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L +SS KSPQ GA IK H + P +IY V+VMPC KK E ARE +
Sbjct: 313 LDNLSSCKSPQAMTGALIKTHYAEVNNIDPKDIYVVSVMPCVAKKFEVAREQL------K 366
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
E+ D D +TT E+ +I+ ++F+ L++ D + G ++G
Sbjct: 367 EDDLFDS-------DVCITTRELARMIKEAGIDFKNLDDEDFDPIYGESSGAGVIFG--- 416
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNL 298
++GG E R A + + G+V E +++++ +R D + A G +K A+ +G N+
Sbjct: 417 ATGGVMEAAARTAVEAITGEVCE-NVDYEAVRGLDGLKEATITAGDKEIKVAVVHGGANI 475
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKP-------KPGQS-PKELIKTLETIY 350
+ ++ KVK + DY F+E MAC GC+NGGGQ P G S P+E K L
Sbjct: 476 KKLMDKVKKGEADYDFIECMACIGGCVNGGGQ--PIVNSQLINAGLSLPQERAKVLYNQD 533
Query: 351 LENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ +NP V+ +Y E+LE+P S KA + +HT Y
Sbjct: 534 KNVRPVRKSHENPSVQKVYKEFLEKPNSHKAHEILHTTY 572
>gi|403388946|ref|ZP_10931003.1| [Fe] hydrogenase [Clostridium sp. JC122]
Length = 566
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 121/380 (31%), Positives = 198/380 (52%), Gaps = 41/380 (10%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K K V+ ++P R +L E FG+S + K+ LK L +FDT+ S DLT++E
Sbjct: 224 DKEKFVVAQIAPAVRVALCEEFGVSSDIITTGKIVAALKMLNFNKVFDTNFSADLTIMEE 283
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
EFI R+K+ + LP+++S CP WI +AE L YISS KSPQQ G
Sbjct: 284 AKEFINRFKEKNK---------LPLITSCCPAWIRFAEMNYKDN-LKYISSCKSPQQMFG 333
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K ++ K + + + V++MPC KK EA R++ +G +VD
Sbjct: 334 AIAKSYLVDKYKIKKENMVVVSIMPCIAKKYEAKRKEL-------------KG----DVD 376
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E+ LI+ +++ L+E D L G L+ G+SGG E R A +
Sbjct: 377 IVITTRELAKLIRESSIDIINLKEEEFDNPLGVSTGAGMLF---GTSGGVMEAALRTAYE 433
Query: 254 TLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K + L+FK +R D +E +E++G ++ A+ +N + ++ ++K C Y
Sbjct: 434 WSCNKTL-NELDFKDVRGLDGIKEATIELDGNK-IEVAVISSLKNARKVMEEIKNGICKY 491
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYD 370
F+E+MACP GC++GGGQ P ++L K ++ IY ++ + + +NP+++ LY
Sbjct: 492 DFIEIMACPGGCIDGGGQ--PYIKSCKEKLEKRMKIIYEKDKVSKIRKSHENPIIKELYK 549
Query: 371 EWLEQPGSEKAKKHVHTEYH 390
++L + + KK +H Y
Sbjct: 550 DFLNE---DNIKKLLHVTYK 566
>gi|134298338|ref|YP_001111834.1| hydrogenase [Desulfotomaculum reducens MI-1]
gi|134051038|gb|ABO49009.1| hydrogenase, Fe-only [Desulfotomaculum reducens MI-1]
Length = 520
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 124/412 (30%), Positives = 213/412 (51%), Gaps = 30/412 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKS 58
+ E+ +D+ + + NK V++ +P +R L E FG++P V K LK LG +
Sbjct: 128 ITERDDIDKVVKALENKDLHVVVQTAPATRVGLGEEFGMAPGTFVEGKQVAALKQLGFDA 187
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT+ E E I R S D + LP +S PGW+ + E +
Sbjct: 188 VFDTNFSADLTIFEEGTELIKRI-----SGD--LHEPLPQFTSCSPGWVKFCEYYYPD-L 239
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
LP++S+ KSPQQ +GA IK + ++ G +P++I+ V++MPC KK EAAR +
Sbjct: 240 LPHMSTCKSPQQMLGALIKTYYAKEKGIKPEKIFSVSIMPCTAKKFEAARPEM------- 292
Query: 179 EETYRDEGL-EIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
+ + G ++ +VD VLTT E+ LI+ K ++ L + D ++ G ++
Sbjct: 293 NSSGKHAGKPQLKDVDVVLTTRELARLIKAKGMDLNNLPDKKYDSLMGEGTGAGLIF--- 349
Query: 238 GSSGGYAETVFRHAAKTLFGK-VIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGF 295
G++GG E R A + + E L IR +E ++++ G +K A+ +G
Sbjct: 350 GATGGVMEAAIRSAYFLITKQDPPEALLNLTPIRGLQGCKEASVDIPGVGTVKVAVVHGL 409
Query: 296 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT--LETIYLEN 353
N + I+ V+ ++ + F+E M CP GC++GGGQ P+ P + ++ + +IY +
Sbjct: 410 SNARPILEAVRKKEAPWHFIEFMCCPGGCISGGGQ--PRTSLPPSDEVRQARINSIYNAD 467
Query: 354 VML---ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHN 402
+ ++N V +LY++++E P S A + +HT Y K +T + N
Sbjct: 468 AHIYSKRKSYENQEVLALYEKFMENPNSHLAHELLHTHYTDRSKQLTVKKKN 519
>gi|366162677|ref|ZP_09462432.1| hydrogenase, Fe-only [Acetivibrio cellulolyticus CD2]
Length = 1145
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 198/377 (52%), Gaps = 32/377 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K V+ ++P R+ +++ + + + + LK LG +FD + + DLT++E EF
Sbjct: 704 KTVVAFVAPAVRSLISKTYNVPFEEASPFMAGLLKKLGFDKVFDFTFAADLTIVEETTEF 763
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R + +P +S CPGW+ + EK+ I+P++SS KSPQ +GAT+K
Sbjct: 764 LTRVS---------NKGVMPQFTSCCPGWVNFVEKRYPE-IIPHLSSCKSPQMMMGATVK 813
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+H + G +++ V+++PC KK EAAR +F E RD VD+VLT
Sbjct: 814 NHYAKLAGLDKKDLFVVSIVPCLAKKHEAARPEFA------PEGIRD-------VDAVLT 860
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
T E++++++L+ ++ + D+ V G L+ G+SGG AE R A + L G
Sbjct: 861 TTEMIEMVKLENIDISEVVPQEFDEPYRQVSGAGILF---GASGGVAEAALRMAVEKLTG 917
Query: 258 KVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRK-VKMRKCDYQFV 315
KV+ HL+F+ IR D +E ++V+ T ++ A+ G N + IV K ++ Y +
Sbjct: 918 KVLTDHLDFEEIRGFDGVKEATVDVD-STKVRVAVVSGLHNAEPIVEKIIQGIDVGYDLI 976
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV-MLADPFKNPLVRSLYDEWLE 374
EVMACP GC+ G G P+ + ++ + L + ++ V +NP + LYDE+
Sbjct: 977 EVMACPGGCICGAGHPVPEKIDAAEKRQQIL--VNIDKVSKYRKSQENPDILRLYDEFYG 1034
Query: 375 QPGSEKAKKHVHTEYHP 391
+ S A + +HT Y P
Sbjct: 1035 EANSHLAHELLHTHYSP 1051
>gi|332981829|ref|YP_004463270.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Mahella
australiensis 50-1 BON]
gi|332699507|gb|AEE96448.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Mahella
australiensis 50-1 BON]
Length = 582
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 120/377 (31%), Positives = 195/377 (51%), Gaps = 36/377 (9%)
Query: 20 VIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
V++ +P RA+L E FG+ P+ +V K+ L+ LG +FDT + DLT++E E
Sbjct: 228 VVVQTAPAVRAALGEEFGM-PIGTRVTGKMAAALRRLGFDKVFDTDFAADLTIMEEGTEL 286
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R K + LP+++S PGW+ Y E + L +SS KSP + +GA +K
Sbjct: 287 LDRLK---------NGGKLPLITSCSPGWVKYCEHYYPEF-LDNLSSCKSPHEMMGAVLK 336
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+ QK+ P +I+ V+VMPC KK EA R + P+VD V+T
Sbjct: 337 SYYAQKMNIDPSKIFVVSVMPCTAKKFEAQRPELAANGH-------------PDVDVVIT 383
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
T E+ +I+ +NF AL + D L G ++GV +GG E R A+ L G
Sbjct: 384 TRELARMIKEAGINFLALPDESFDDPLGISTGAGVIFGV---TGGVMEAALRTVAEILTG 440
Query: 258 KVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVE 316
+ +E ++EF +R + R +++ G T+ K A+ G N ++ ++K + Y F+E
Sbjct: 441 EELE-NIEFGVVRGLEGIRTASIDAGGVTI-KAAVANGTANAAALLDRIKSGQEHYDFIE 498
Query: 317 VMACPSGCLNGGGQIKPKPGQSPKELIKT--LETIYLE--NVMLADPFKNPLVRSLYDEW 372
+M CP GC+NGGGQ Q IK + +Y E ++ + +NP ++++Y+E+
Sbjct: 499 IMGCPGGCINGGGQPILTAQQRWDIDIKAERAKALYQEDRDMPIRKSHENPQIKAIYNEF 558
Query: 373 LEQPGSEKAKKHVHTEY 389
L +P S A + +HT Y
Sbjct: 559 LGKPNSHTAHELLHTHY 575
>gi|154496519|ref|ZP_02035215.1| hypothetical protein BACCAP_00811 [Bacteroides capillosus ATCC
29799]
gi|150274152|gb|EDN01243.1| hydrogenase, Fe-only [Pseudoflavonifractor capillosus ATCC 29799]
Length = 449
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 201/380 (52%), Gaps = 24/380 (6%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+ K V++S SP RASL E FG++P V K+ L++LG + DT+ + DLT++E
Sbjct: 78 DPNKVVVVSTSPAVRASLGEEFGMAPGAFVEGKMVALLRALGADYVLDTNFAADLTIVEE 137
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+E + R Q + LP +S CPGW+ +AE +LP++S+ KSP G
Sbjct: 138 ASELLRRLTQG--------DQPLPQFTSCCPGWVHFAEI-YAPELLPHLSTAKSPIGMQG 188
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
T+K + QK+G P +I HV + PC KK E RE ++ + + + EG+ + D
Sbjct: 189 PTVKTYFAQKMGLDPRQIVHVALTPCTAKKFEIRRE----EMHAAADYHGVEGMR--DTD 242
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
++TT E+ + + V++ ALE+SP D ++ G ++ G++GG E R A
Sbjct: 243 QIITTRELARWAKAEGVDWTALEDSPYDSLMGKASGAGVIF---GNTGGVMEAALRTAYA 299
Query: 254 TLFGKVIEGH-LEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
L G+ L+ +R + RE +++ G++ L A+ YG N + + ++K
Sbjct: 300 YLTGQPAPASLLQLSPVRGYEGVREAQVDLGGQS-LNVAVIYGTANARGFLERMKADGKQ 358
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLY 369
Y FVEVMACP GC+ GGGQ K + + + +Y + + L +NP ++++Y
Sbjct: 359 YHFVEVMACPGGCIGGGGQPKDIMKDADETRKSRIAALYQRDGAMSLRTSHENPEIKAVY 418
Query: 370 DEWLEQPGSEKAKKHVHTEY 389
+E+ P SE A+K +HT Y
Sbjct: 419 EEFYGHPLSEMAEKMLHTAY 438
>gi|428176855|gb|EKX45737.1| hypothetical protein GUITHDRAFT_42060, partial [Guillardia theta
CCMP2712]
Length = 389
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 114/344 (33%), Positives = 183/344 (53%), Gaps = 28/344 (8%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLK-SLGVKSI 59
M+++Q +D + G ++S SPQS +SLA F + + + +++FLK +GVK +
Sbjct: 62 MMKRQGVDHLTKAVEVGSTCVVSFSPQSLSSLAACFNTTASKFARSVSSFLKLRVGVKFV 121
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
FDTS S + EA EF+ R+ + P+L + CPG + ++EK+
Sbjct: 122 FDTSLSAQVAQHEAKKEFMERWG---------ARGPFPILCTECPGVVIFSEKKQYDLFA 172
Query: 120 PYISSVKSPQQTIGATIKHHICQKL-------GFRPDEIYHVTVMPCYDKKLEAAREDFV 172
+S+V+SPQ G + ++ L G +I+H T+MPC+DKKLE+ARE+F
Sbjct: 173 RLLSTVRSPQAISGE--RTYLFSSLNPFDMSTGKLIKQIWHCTIMPCFDKKLESAREEF- 229
Query: 173 FQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM--LTNVDDE 230
S ET PE D+V+TT E + + F+ +ES + + L ++ +
Sbjct: 230 ----SVVETEGGALTSSPETDAVITTSEFYSYLLQEGFQFQGGKESNVGRKFKLPSMSEP 285
Query: 231 GHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL--EFKTIRNSDFREVALEVEGKTLLK 288
AG S GY E V RHAA+ + G + L + + D +E+ + L
Sbjct: 286 QLSDHSAGFSNGYLEVVARHAAQQILGINLPPSLVYNYPATGSLDIKELTVSDGSGRELN 345
Query: 289 FALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK 332
FA YG+++LQ +++KV+MR+C Y +VE+M+CP GC NGGGQ+K
Sbjct: 346 FAAVYGYRHLQTLIQKVRMRQCKYHYVELMSCPEGCTNGGGQLK 389
>gi|373486339|ref|ZP_09577014.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Holophaga
foetida DSM 6591]
gi|372011914|gb|EHP12500.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Holophaga
foetida DSM 6591]
Length = 587
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 188/381 (49%), Gaps = 36/381 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ ++P RA+L E FG+ V KL T L+ LG +FDT+ DLT++E E
Sbjct: 227 KHVVVQVAPAIRATLGEMFGLPVGTPVTGKLVTALRRLGFDEVFDTNFGADLTIMEEATE 286
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F++R + + +LP+L+S PGW+ + EK ++ + S+ KSP Q A I
Sbjct: 287 FLSRVSKGE---------NLPLLTSCSPGWVSFLEK-FYPEMIRFTSTCKSPMQMTSALI 336
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +K G P +I V +MPC KK EA R + P D+VL
Sbjct: 337 KSYYAEKKGLDPKDICVVAIMPCVAKKFEAGRPEHTMANGD------------PYTDAVL 384
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ ++F L E D+ + ++G ++GG E R AA L
Sbjct: 385 TTRELGWMIKSYGIDFNVLPEGEFDRPMGISSGAADIFG---ATGGVMEAALRTAAVKLT 441
Query: 257 GKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G+ + G LEF +R + +E +++ G + A+ G N + ++ +K + +Y V
Sbjct: 442 GEEL-GPLEFAEVRGVTGIKEATIKINGMEI-NIAVSNGLNNAKKLLESIKSGEKNYHLV 499
Query: 316 EVMACPSGCLNGGGQIKPKPGQSP------KELIKTLETIYLENVMLADPFKNPLVRSLY 369
E+MACP GC+ GGGQ P Q P + K L I + L +NP + LY
Sbjct: 500 EIMACPGGCIMGGGQPYPPVYQDPMDPEISRARAKALYGIDAQK-QLRRSHENPAIAHLY 558
Query: 370 DEWLEQPGSEKAKKHVHTEYH 390
E+L +P EKA + +HT Y
Sbjct: 559 AEFLGEPNGEKAHQLLHTTYQ 579
>gi|223999199|ref|XP_002289272.1| narf-like protein [Thalassiosira pseudonana CCMP1335]
gi|220974480|gb|EED92809.1| narf-like protein [Thalassiosira pseudonana CCMP1335]
Length = 468
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 126/423 (29%), Positives = 218/423 (51%), Gaps = 53/423 (12%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQV--FKKLTTFLK-SLGVK 57
++ S+++ + K ++ ++S S A L H + + + L+ FL G K
Sbjct: 67 LMSHHSIEKLREPLQPKKLIVFTISAASLADLYRHLYLETEETEGDRDLSIFLNIEFGAK 126
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESD---DERSNSSLPMLSSACPGWICYAEKQL 114
+ D S+ ++L+E+ EF RYK+ Q + + ++ LPML+S+CPG++C EK
Sbjct: 127 MVIDGILSQQISLLESAEEFCYRYKKQQVKNIIVTNKQSTPLPMLASSCPGFVCLVEKT- 185
Query: 115 GSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQ 174
++P +SSVKSP GA +K+ + IYHV +MPC+DKKLEA R DF ++
Sbjct: 186 APKVVPLLSSVKSPMAVSGALLKNTTSSVNAVSNNSIYHVAIMPCHDKKLEAGRNDFAWE 245
Query: 175 LDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLY 234
+ + Y + I EVD VLTTGE+L+++ KA++ + D+ +++ + ++
Sbjct: 246 RQTLLQ-YSNSASIINEVDLVLTTGELLEILT-KAISTATATTTSEDEKYNDLELDTGIH 303
Query: 235 GVAGSSGGYAETVFRHAAKTLFGKVI--EGHLEFKTIRNSDFREVALEVEGKTLLKFALC 292
G SG YA+ +FR A + LFG + + L +K + + E ++L+FA
Sbjct: 304 G----SGSYADFIFRFATRKLFGCTLPSDKPLPWKGSTSFSSSLASSEQSATSVLRFATA 359
Query: 293 YGFQNLQNIVRKVKMRK-------CDYQFVEVMACPSGCLNGGGQI-----KPKPGQSPK 340
YGF+N+Q I++ + K Y +VE+MACPSGC NGGGQI + P ++ +
Sbjct: 360 YGFKNVQLILQNLSKEKQTSNSMDSGYDYVEIMACPSGCPNGGGQIGSLGKRETPRETKE 419
Query: 341 ELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEK-----------AKKHVHTEY 389
+ +T+ + P++R ++E+ + EK A++ +HT +
Sbjct: 420 RVRRTVSVV-------------PVLR--FNEYTKATVYEKDPFNDGCFGRTARRLLHTRF 464
Query: 390 HPV 392
H V
Sbjct: 465 HVV 467
>gi|358062271|ref|ZP_09148917.1| hypothetical protein HMPREF9473_00979 [Clostridium hathewayi
WAL-18680]
gi|356699400|gb|EHI60914.1| hypothetical protein HMPREF9473_00979 [Clostridium hathewayi
WAL-18680]
Length = 582
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 133/400 (33%), Positives = 196/400 (49%), Gaps = 43/400 (10%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVK 57
+ EK +D+ L+ I + K VI+ +P RA L E FG P+ V K+ L+ +G
Sbjct: 207 LREKDYIDDVLAAIADPDKHVIVQTAPAVRAGLGEEFGY-PIGTNVEGKMAAALRRIGFD 265
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT+ S DLT++E +EFI R + LPM++S PGWI Y E
Sbjct: 266 KVFDTNFSADLTIMEEAHEFIERVQHG---------GVLPMITSCSPGWIKYCEHYFPD- 315
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+ +SS KSPQQ GA K + +K G +P +I V++MPC KK E R D
Sbjct: 316 MTENLSSCKSPQQMFGAIAKSYYAEKQGLKPKDIVSVSIMPCTAKKFEIGRNDQAAN--- 372
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
+P+VD LTT E+ +I+ + F L + D L G G A
Sbjct: 373 ----------GVPDVDYSLTTRELARMIKKLGIRFNELPDEEFDAPL------GLGTGAA 416
Query: 238 ---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCY 293
G++GG E R A +TL G+ + L+F +R + +E V G + K A+
Sbjct: 417 VIFGATGGVMEAALRTAVETLTGEELAA-LDFTDVRGMEGIKEATYPVAGMDV-KVAVAS 474
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN 353
G N + ++ KVK + DY F+E+M CP GC+NGGGQ + ++ L L +
Sbjct: 475 GLGNAKKLLDKVKSGEADYHFIEIMGCPGGCVNGGGQPQQPGPVRNTVDVRALRAQVLYD 534
Query: 354 VMLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+P + NP ++ LYD +L +PGSE A +HT Y
Sbjct: 535 SDKNNPIRKSHENPAIKELYDTYLGRPGSEMAHHLLHTTY 574
>gi|322698495|gb|EFY90265.1| hypothetical protein MAC_03780 [Metarhizium acridum CQMa 102]
Length = 600
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 120/369 (32%), Positives = 184/369 (49%), Gaps = 73/369 (19%)
Query: 21 IISLSPQSRASLAEHFG--ISPLQVFKKLTTFLKS------------LGVKSIFDTSCSR 66
+ S+SPQ+RA+LA G +S Q + L L+S G + DT+ +R
Sbjct: 132 VASVSPQTRANLAAACGRGVSEAQAGRMLERLLRSERWGLAGGGRWRNGFTWVVDTNVAR 191
Query: 67 DLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVK 126
++ L+ +E + R + + R P+LSSACPGW+CYAEK ++LP++S VK
Sbjct: 192 EVALVLGADEVLGRTTRPGGNAPAR-----PILSSACPGWVCYAEKTH-PHVLPHLSRVK 245
Query: 127 SPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEG 186
SPQ G +K + +KLG P I+H+ VMPC+DKKLEA+RE+ +E + G
Sbjct: 246 SPQALTGTILKTTLSRKLGIPPSRIWHLAVMPCFDKKLEASREELT------DEVWAGSG 299
Query: 187 LE---IPEVDSVLTTGEVLDLIQLKAVNF-------EALEESPLDKMLTNVDDEGHLY-- 234
L + +VD V+T+ E+L L + + +NF + S L+ + D H +
Sbjct: 300 LPGRGVRDVDCVITSKEILMLAESRGLNFFDIPRDNDGTTSSLLEPAVPFPDARLHSFLF 359
Query: 235 ---------GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKT 285
+AGSSGG + + A + G ++ RN+D E + G+
Sbjct: 360 PARASPRVPRMAGSSGGLLYHILQCKAAQIPGA----QIQTTRGRNADVVEFVVAANGEP 415
Query: 286 LLKFALCYGFQNLQNIVRKVKMRK----------------------CDYQFVEVMACPSG 323
+ K A YGF+N+QN+VR++K + +Y +VEVMACP G
Sbjct: 416 VFKAARYYGFRNIQNLVRRLKPARPSRMPGGKPFGSARRPTGKSASLEYGYVEVMACPGG 475
Query: 324 CLNGGGQIK 332
C NGGGQ+K
Sbjct: 476 CTNGGGQLK 484
>gi|392395414|ref|YP_006432016.1| hydrogenase, Fe-only [Desulfitobacterium dehalogenans ATCC 51507]
gi|390526492|gb|AFM02223.1| hydrogenase, Fe-only [Desulfitobacterium dehalogenans ATCC 51507]
Length = 527
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 197/395 (49%), Gaps = 26/395 (6%)
Query: 3 EKQSLDEFLSNINKGK-AVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIF 60
E++ D+ L ++ V++ +P +R L E FG+ V K L+ LG IF
Sbjct: 132 EREDSDKVLKALSDPNITVVVQTAPATRIGLGEEFGMPVGTNVQGKQVAALRELGFDVIF 191
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + DLT++E +E + R + LP L+S CPGW+ + E ++P
Sbjct: 192 DTNFTADLTIMEEGSELVKRITGEL-------HHPLPQLTSCCPGWVKFVE-YFYPDLIP 243
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+SS KSPQQ GA +K + +K P ++ V +MPC KK E R + + +
Sbjct: 244 NLSSAKSPQQMEGALVKTYFAEKNTIDPKTVFSVAIMPCTAKKFECQRPEMI-----SAQ 298
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
TY + P+VD VLTT E+ +I+ ++F +L + D+++ G ++ G++
Sbjct: 299 TYLKDKHVSPDVDVVLTTRELARMIKRAGIDFPSLPDEEYDQLMGIGTGAGAIF---GTT 355
Query: 241 GGYAETVFRHAAKTLFGKVIEGHL-EFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNL 298
GG E R A + G+ L + +R + +E ++ + G +K A+ G N
Sbjct: 356 GGVMEAAVRSAYYLITGQQPPSALWQLAPVRGMEGVKEASVPIPGAGDVKIAVISGLDNA 415
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENV 354
+ I+ +V+ + F+EVMACP GC GGGQ P+ P + ++ L N
Sbjct: 416 RKIMEQVRAGNSPWAFIEVMACPGGCQYGGGQ--PRSSAPPSDGVRNTRAASLYKIDANA 473
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L + NP ++ +Y+++L P SEKA++ +HT Y
Sbjct: 474 KLRNSHDNPQIKQVYEDFLTSPLSEKAEELLHTHY 508
>gi|328854173|gb|EGG03307.1| hypothetical protein MELLADRAFT_49568 [Melampsora larici-populina
98AG31]
Length = 494
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 134/357 (37%), Positives = 183/357 (51%), Gaps = 50/357 (14%)
Query: 21 IISLSPQSRASLAEHFGISPLQVFKKLTTF-LKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
IIS+S QS ASL+ ++ +S F+ L TF ++ +G +FD+ S+ L+L + EF
Sbjct: 108 IISISTQSLASLSAYYKLSISATFESLKTFFIEIIGFHLVFDSKFSQALSLYQTKLEFDR 167
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
++Q Q ++ +LSS+CPGWICYAEK IL IS+VKSPQ G+ IK
Sbjct: 168 IHRQKQAQVKPKT-----ILSSSCPGWICYAEKTQTEDILNMISNVKSPQAIQGSIIKST 222
Query: 140 ICQKL-GFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
KL P++IYHVT+M CYDKKLEA+R+DF+ + E +D VD VLTT
Sbjct: 223 QFSKLINVTPNQIYHVTIMSCYDKKLEASRQDFI----NSESGVKD-------VDLVLTT 271
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA--------------------- 237
GEV + L+ +F+ L S +T + L
Sbjct: 272 GEVQKM--LEEHHFDLLSASSSQPQITQTSNAPKLSSEVTSHTPSTSIIPTWIDRPESER 329
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG----KTLLKFALCY 293
SSGGY + + + K + L + R D+ E + K L K A CY
Sbjct: 330 SSSGGYLQFIIQSILDE--HKSADATLTIERKRGRDYCEYLITTTDQDTKKVLFKGAHCY 387
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIY 350
GF+NLQN+VRK K DY VEVMACPSGCLNGGGQI ++ + LE+ Y
Sbjct: 388 GFKNLQNLVRKFK-GPTDY--VEVMACPSGCLNGGGQISKPDHYETRDWLDELESKY 441
>gi|217077862|ref|YP_002335580.1| hydrogenase [Thermosipho africanus TCF52B]
gi|217037717|gb|ACJ76239.1| hydrogenase [Thermosipho africanus TCF52B]
Length = 583
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 128/377 (33%), Positives = 195/377 (51%), Gaps = 30/377 (7%)
Query: 17 GKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K ++ +P R ++ E FG+ P V K+ ++ LG +FDT+ + DLT++E
Sbjct: 221 NKILVAQTAPSVRVAIGEEFGMEPGSVSTGKMVAAIRKLGFDYVFDTNFAADLTIMEEGT 280
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
E I R K PM +S CPGWI EK+ +I SS KSPQQ + +
Sbjct: 281 ELIGRIKDG---------GPFPMFTSCCPGWINLLEKEYPEFI-NNASSAKSPQQMMSSI 330
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+K + +K+G P++I V++MPC KK E R Q++ ++G EI D V
Sbjct: 331 VKTYFAKKIGVDPEDIIMVSIMPCTAKKDEITR--------PQQKIKLEDGREIKTTDYV 382
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
+TT E+ LI++K +NF L++ D L G ++GV +GG E R A + +
Sbjct: 383 ITTRELAKLIKMKQINFIGLDDEDFDNPLGTSTGAGAIFGV---TGGVMEAALRTAYEII 439
Query: 256 FGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
K + LEF +R D RE +++EGK L K A+ +G N++ ++ ++ Y F
Sbjct: 440 TNKKLP-KLEFNAVRGLDGIREAEIDIEGKKL-KVAIAHGTANVKKLLDDIRDGVRYYDF 497
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEW 372
+E+MACP GC+ GGGQ K P L K IY E L +NP ++ LY+E+
Sbjct: 498 IEIMACPGGCIGGGGQPK---SLDPDILKKRASAIYSIDELSTLRRSHENPDIQKLYEEF 554
Query: 373 LEQPGSEKAKKHVHTEY 389
LE+P S A + +HT Y
Sbjct: 555 LEKPNSHIAHELLHTYY 571
>gi|160902189|ref|YP_001567770.1| hydrogenase, Fe-only [Petrotoga mobilis SJ95]
gi|160359833|gb|ABX31447.1| hydrogenase, Fe-only [Petrotoga mobilis SJ95]
Length = 578
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/394 (34%), Positives = 209/394 (53%), Gaps = 34/394 (8%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
++E+ +DE + N+ K V++ +P R +LAE FG P + KL LK +G
Sbjct: 208 LVERSYIDEVWKELENEEKHVVVQTAPAVRVALAEEFGYEPGTISTGKLVGALKLMGFDK 267
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ DLT++E EF R + + LPML+S CPGW+ + E Q +
Sbjct: 268 VFDTNFGADLTIMEEATEFKERLE---------NGGFLPMLTSCCPGWVKFIEHQFPD-L 317
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L SS KSPQQ GA K + QK P +I V++MPC KK EAARE ++++
Sbjct: 318 LEMPSSAKSPQQMFGAIAKSYYAQKNDIDPKKITVVSIMPCLAKKYEAARE----EINAS 373
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
E YRD VD VLTT E+ +I+ +NF+A+ E D L ++ G
Sbjct: 374 PE-YRD-------VDYVLTTRELAKMIKEAGINFKAVPEREYDSPLGESTGAAAIF---G 422
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-LEVEGKTLLKFALCYGFQN 297
+GG AE R A + + G ++ +EF+ + + VA +E+ GK L+ + YG N
Sbjct: 423 RTGGVAEAALRTAYEWITGNELK-EVEFEQLHGYESIRVAEVEINGKK-LRVGVAYGLGN 480
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVM 355
+ ++ V+ K D +E+MACP GC+ GGGQ P + K +E + + ++ +
Sbjct: 481 ARKLLEDVQSGKIDLHLIEIMACPGGCVGGGGQ--PYHHGDFNVIKKRIEALNVVDKSKI 538
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ +NP + LY+E+LE+PGSEK+ + +HT Y
Sbjct: 539 IRKSHENPSIVRLYNEYLEKPGSEKSHQLLHTHY 572
>gi|147677003|ref|YP_001211218.1| iron only hydrogenase large subunit [Pelotomaculum
thermopropionicum SI]
gi|146273100|dbj|BAF58849.1| iron only hydrogenase large subunit, C-terminal domain
[Pelotomaculum thermopropionicum SI]
Length = 530
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 123/388 (31%), Positives = 196/388 (50%), Gaps = 26/388 (6%)
Query: 10 FLSNINKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDL 68
F + +K K V++ +P +R +L E FG+ P V + L+ LG ++ DT+ + DL
Sbjct: 148 FEALADKDKFVLVQTAPATRVALGEEFGLPPGTWVQGQQVAALRRLGFNAVLDTNFAADL 207
Query: 69 TLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSP 128
T++E E I R K LP +S PGWI + E ++P ISS KSP
Sbjct: 208 TIMEEATELIKRIKGE-------VKKPLPQFTSCSPGWIKFCE-YFYPELIPNISSCKSP 259
Query: 129 QQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE 188
QQ GA K + + G P+ I V+VMPC KK EA R ++++ + ++ L
Sbjct: 260 QQMFGALAKTYYARARGIDPENIVSVSVMPCTAKKFEAQRP----EMNASAKYWKRGNLR 315
Query: 189 IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVF 248
+VD VLTT E+ +++ K ++ AL E DK++ ++G ++GG E
Sbjct: 316 --DVDVVLTTRELARMLKEKQIDLTALPEENYDKLMGEETGGAVIFG---ATGGVMEAAA 370
Query: 249 RHAAKTLFGKVIEG-HLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVK 306
R A + G+ L +R + +E A E+ G L+ A+ +G N + I+ V+
Sbjct: 371 RTAYFLITGQEPPALFLNLTPVRGLAGVKEAAAEIPGVGTLRVAVSHGMANGRKILNAVR 430
Query: 307 MRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIK--TLETIYLENVMLA--DPFKN 362
K + FVE M CP GC+ GGGQ P+ P + ++ L +Y + L+ ++N
Sbjct: 431 EGKAPWHFVEFMTCPGGCIAGGGQ--PRTAVPPSDTVREQRLAALYKADASLSKRKSYEN 488
Query: 363 PLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
V +LY ++L P SE A++ +HTEYH
Sbjct: 489 EEVAALYRDFLGHPMSELAEELLHTEYH 516
>gi|302833840|ref|XP_002948483.1| iron hydrogenase [Volvox carteri f. nagariensis]
gi|300266170|gb|EFJ50358.1| iron hydrogenase [Volvox carteri f. nagariensis]
Length = 497
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 129/439 (29%), Positives = 211/439 (48%), Gaps = 74/439 (16%)
Query: 4 KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDT 62
KQ+ E + K +I ++P R +++E FG++P +L L+ LG +FDT
Sbjct: 76 KQAFAELDKPKAERKVMIAQVAPAVRVAISESFGLAPGATTPGQLAESLRCLGFDMVFDT 135
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY--ILP 120
DLT++E E ++R Q+Q S LPM +S CPGWI EK SY ++P
Sbjct: 136 LYGADLTIMEEGTELLSRL-QAQLEAHPHSEEPLPMFTSCCPGWIALLEK---SYPELIP 191
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
Y+SS KSPQ +GA +K ++ +K G P +I V++MPC K+ EA R+ F
Sbjct: 192 YVSSCKSPQMMLGAMVKTYLAEKKGISPSDISMVSIMPCVRKQGEADRDWFC-------- 243
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
G + +VD V+TT E+ ++++ + +N L E D+ L + G ++G ++
Sbjct: 244 ---SGGAGVRDVDHVITTAELGNILKERNINLPELPEGGWDEPLGSGSGAGVVFG---TT 297
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD----------------FREV------- 277
GG E R A + + + + L +R D F E+
Sbjct: 298 GGVMEAALRTAYELVTQQPLP-RLNLSEVRGMDGIKETEIKMVPPPGSKFAELVAARAAA 356
Query: 278 -----------ALEVEGKT-----------LLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
A++ +G + L+ A+ G N + ++ K++ +C Y FV
Sbjct: 357 KAMDEAAASAGAIKWDGGSNFTADDGAKGITLRVAVANGLGNAKKLLTKMQTGECKYDFV 416
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIY--LENVMLADPFKNPLVRSLYDEW 372
E+MACPSGC+ GGGQ P + K++ +K + +Y E + +NP V+ Y+++
Sbjct: 417 EIMACPSGCVGGGGQ----PRSTDKQVAVKRQQALYDLDERATIRRSHENPAVQKAYEDF 472
Query: 373 LEQPGSEKAKKHVHTEYHP 391
L +P S KA +HT Y P
Sbjct: 473 LGEPNSHKAHDLLHTHYVP 491
>gi|440631831|gb|ELR01750.1| hypothetical protein GMDG_00126 [Geomyces destructans 20631-21]
Length = 579
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 123/364 (33%), Positives = 188/364 (51%), Gaps = 61/364 (16%)
Query: 17 GKAVIISLSPQSRASLAEHFGISPLQ---VFKKLTTFLKSL--------GVKSIFDTSCS 65
G+ I S+SPQSRAS++ +G+S + + ++L + + L G + + DT+ +
Sbjct: 111 GRIYIASVSPQSRASISAAYGVSEREAGYMIEQLLSGPQGLRIGGEQKNGFQWVVDTNVA 170
Query: 66 RDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSV 125
R+ L+ E A + +E + P+L+S+CPGWICYAEK ++LP++S +
Sbjct: 171 REACLVLGAEEVAASMQGRKEGPTK------PILTSSCPGWICYAEKTH-PHVLPHLSRL 223
Query: 126 KSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDE 185
KSPQ +G +K + +KL PD I+HV VMPC+DKKLEA+RE+ E + +
Sbjct: 224 KSPQALMGTLLKTTLSKKLKISPDMIWHVAVMPCFDKKLEASREELTDIHWDGEASPGTK 283
Query: 186 GLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLY----------- 234
G+ +VD VLT+ E++ L + + ++F AL S L + D H +
Sbjct: 284 GVR--DVDCVLTSKELIMLAESRGIDFAALPRSQLSTSQSFPDQALHNFLFPPRSSIQSN 341
Query: 235 --GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREV-ALEVEGKTLLKFAL 291
AG+SGG + ++ A G I + RN+D + + G+TL K A
Sbjct: 342 GDRAAGTSGGNLHYILQYFASQHPGSTI----QTTRGRNADVMDYNIISSSGETLFKTAR 397
Query: 292 CYGFQNLQNIVRKVK---------------MRK--------CDYQFVEVMACPSGCLNGG 328
YGF+N+QN+VRK+K RK + +VEVMACP GC NGG
Sbjct: 398 YYGFRNIQNLVRKLKPVRPSRMPGGRPVGAARKPVGKAGSSVELSYVEVMACPGGCTNGG 457
Query: 329 GQIK 332
GQIK
Sbjct: 458 GQIK 461
>gi|374340836|ref|YP_005097572.1| hydrogenase, Fe-only [Marinitoga piezophila KA3]
gi|372102370|gb|AEX86274.1| hydrogenase, Fe-only [Marinitoga piezophila KA3]
Length = 577
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 132/396 (33%), Positives = 210/396 (53%), Gaps = 39/396 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
++EK +D+ I + K V++ +P R +L E FG P + KL + LK LG
Sbjct: 208 LVEKSYIDQVWDVIEDPTKHVVVQTAPAVRVALGEEFGYEPGTISTGKLVSALKVLGFDK 267
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT++E +EF R + + +PML+S CPGW+ + E Q +
Sbjct: 268 VFDTNFSADLTIMEEASEFKERLE---------NGGYMPMLTSCCPGWVKFLEHQFPD-L 317
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L SS KSPQQ GA K + QK G P +I V+VMPC KK EA RE+
Sbjct: 318 LEMPSSAKSPQQMFGAIAKTYYAQKAGIDPKDIVVVSVMPCLAKKYEANREEM------- 370
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
RD G + +VD V+TT E+ D+I+ +NF+ L E D L ++ G
Sbjct: 371 ----RDSGYK--DVDYVITTRELADMIRESGINFQNLPEGEYDNPLGESTGAADIF---G 421
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-LEVEGKTLLKFALCYGFQN 297
+GG AE R A + + G+ ++ ++F+ +R + +A ++++G+ ++ + +G N
Sbjct: 422 RTGGVAEAALRTAYEWITGEELK-DVDFEALRGYEGVRIAEVDIKGQK-IRIGVAHGLGN 479
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLA 357
++ ++ ++ K + +EVMACP GC+ GGGQ P + K +E I + +
Sbjct: 480 VRKLLEDIREGKVEVHLIEVMACPGGCVGGGGQ--PYHHGDFNIIKKRMEAI--NKIDKS 535
Query: 358 DPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
P + NP ++ LYDE+LE+P SEK+ K +HT Y
Sbjct: 536 KPIRKSHENPSIKKLYDEFLEKPLSEKSHKLLHTRY 571
>gi|392961982|ref|ZP_10327429.1| hydrogenase, Fe-only [Pelosinus fermentans DSM 17108]
gi|392452740|gb|EIW29645.1| hydrogenase, Fe-only [Pelosinus fermentans DSM 17108]
Length = 460
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 125/383 (32%), Positives = 196/383 (51%), Gaps = 35/383 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+K + ++ +P R SLAE FG+ PL V K+ LK LG ++DT+ + DLT++E
Sbjct: 105 DKKQFSMVQCAPAVRVSLAEEFGM-PLGSLVPGKMVAALKRLGFTRVYDTNFAADLTIME 163
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+E + R + SLPM +S CP W+ + E + ++ ++SS KSPQQ
Sbjct: 164 EGSELVKRITE---------GGSLPMFTSCCPAWVKFVENEYPE-LIDHLSSCKSPQQMA 213
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ K + G E+Y V +MPC KK EA R + + Y+D V
Sbjct: 214 GSMFKTYGASVDGVDAREVYSVAIMPCTCKKFEANRPEM------KSSGYQD-------V 260
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D+VLTT E+ LI+ A++F AL E DK L G ++GV +GG E R A
Sbjct: 261 DAVLTTRELAYLIKEAAIDFNALPEESFDKPLGMYSGAGTIFGV---TGGVMEAAIRTAY 317
Query: 253 KTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
+ + + IE ++ ++R R+V L+ G LK + G +N+ I+ ++ K D
Sbjct: 318 ELITKEPIE-NVNVTSVRGEQGVRKVTLDT-GALKLKTVVVSGLKNVIPILEDIQRGKAD 375
Query: 312 YQFVEVMACPSGCLNGGGQIK---PKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSL 368
+ F+EVM CP+GC++GGGQ K P G+ E K+ + E +NP ++ +
Sbjct: 376 FHFMEVMTCPAGCISGGGQPKMLLPVDGRKAYENRKSSTYQHDEEQRYRKSHENPEIQDI 435
Query: 369 YDEWLEQPGSEKAKKHVHTEYHP 391
Y ++L +P K+ K +HT Y P
Sbjct: 436 YQKFLGEPLGHKSHKLLHTHYKP 458
>gi|421056163|ref|ZP_15519090.1| hydrogenase, Fe-only [Pelosinus fermentans B4]
gi|421061387|ref|ZP_15523721.1| hydrogenase, Fe-only [Pelosinus fermentans B3]
gi|421067292|ref|ZP_15528788.1| hydrogenase, Fe-only [Pelosinus fermentans A12]
gi|421072858|ref|ZP_15533962.1| hydrogenase, Fe-only [Pelosinus fermentans A11]
gi|392438579|gb|EIW16402.1| hydrogenase, Fe-only [Pelosinus fermentans B4]
gi|392445285|gb|EIW22617.1| hydrogenase, Fe-only [Pelosinus fermentans A11]
gi|392449921|gb|EIW26996.1| hydrogenase, Fe-only [Pelosinus fermentans B3]
gi|392450021|gb|EIW27079.1| hydrogenase, Fe-only [Pelosinus fermentans A12]
Length = 459
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 125/383 (32%), Positives = 196/383 (51%), Gaps = 35/383 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+K + ++ +P R SLAE FG+ PL V K+ LK LG ++DT+ + DLT++E
Sbjct: 104 DKKQFSMVQCAPAVRVSLAEEFGM-PLGSLVPGKMVAALKRLGFTRVYDTNFAADLTIME 162
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+E + R + SLPM +S CP W+ + E + ++ ++SS KSPQQ
Sbjct: 163 EGSELVKRITE---------GGSLPMFTSCCPAWVKFVENEYPE-LIDHLSSCKSPQQMA 212
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ K + G E+Y V +MPC KK EA R + + Y+D V
Sbjct: 213 GSMFKTYGASVDGVDAREVYSVAIMPCTCKKFEANRPEM------KSSGYQD-------V 259
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D+VLTT E+ LI+ A++F AL E DK L G ++GV +GG E R A
Sbjct: 260 DAVLTTRELAYLIKEAAIDFNALPEESFDKPLGMYSGAGTIFGV---TGGVMEAAIRTAY 316
Query: 253 KTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
+ + + IE ++ ++R R+V L+ G LK + G +N+ I+ ++ K D
Sbjct: 317 ELITKEPIE-NVNVTSVRGEQGVRKVTLDT-GALKLKTVVVSGLKNVIPILEDIQRGKAD 374
Query: 312 YQFVEVMACPSGCLNGGGQIK---PKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSL 368
+ F+EVM CP+GC++GGGQ K P G+ E K+ + E +NP ++ +
Sbjct: 375 FHFMEVMTCPAGCISGGGQPKMLLPVDGRKAYENRKSSTYQHDEEQRYRKSHENPEIQDI 434
Query: 369 YDEWLEQPGSEKAKKHVHTEYHP 391
Y ++L +P K+ K +HT Y P
Sbjct: 435 YQKFLGEPLGHKSHKLLHTHYKP 457
>gi|383786526|ref|YP_005471095.1| hydrogenase, Fe-only [Fervidobacterium pennivorans DSM 9078]
gi|383109373|gb|AFG34976.1| hydrogenase, Fe-only [Fervidobacterium pennivorans DSM 9078]
Length = 668
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 121/387 (31%), Positives = 196/387 (50%), Gaps = 37/387 (9%)
Query: 4 KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDT 62
+ +D+ I +GK VI ++P RASL E FG+ + ++ + LK +G K +FD
Sbjct: 205 RNDVDKVYKAIEEGKYVIGMVAPAVRASLQEEFGLEDDMAAAGRMVSLLKMIGFKKVFDV 264
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
+ + DL E +EFI R ++ ++ LP +S CPGW+ +AE+ Y L +
Sbjct: 265 AFAADLVTYEEAHEFIERLEKGEK---------LPQFTSCCPGWVKFAEQYYPEY-LANL 314
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
SSVKSPQ +GA IK +++G P +I V++MPC KK EA RE+F
Sbjct: 315 SSVKSPQMALGAIIKKFYAKEIGVDPKDIVLVSIMPCTAKKFEAEREEFN---------- 364
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 242
+VD VLTT EV+ +I+ ++ +E P D+ G + G SGG
Sbjct: 365 -------GDVDIVLTTREVVKIIKSTGIDIRMVEPEPFDRPFGLSSQSGLSF---GKSGG 414
Query: 243 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIV 302
+V + + K ++E K I + R + +E+ ++K +G N + IV
Sbjct: 415 VLGSVVNVINEIIGIK----NIETKQI-SEGVRLITIELSNGKVVKGIAVFGLGNTRKIV 469
Query: 303 RKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKN 362
+K + D VEVMAC GC+ GGGQ P ++ ++ K L + +V+++ P +N
Sbjct: 470 DSIKAGELDVDIVEVMACNYGCIGGGGQPYPNDVRTREKRAKILREVQSIDVLIS-PTEN 528
Query: 363 PLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ LY+ +L +P S +A + +HT Y
Sbjct: 529 FHMLQLYERYLNKPLSHEAHEVIHTHY 555
>gi|189189516|ref|XP_001931097.1| LET1-like protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972703|gb|EDU40202.1| LET1-like protein [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 629
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/380 (31%), Positives = 178/380 (46%), Gaps = 75/380 (19%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS----------IFDTSC 64
+GK + S+SPQ+RASLA F +S + ++ L G++ + DT+
Sbjct: 127 EGKLFVASVSPQARASLAAVFNVSEAEAGNMISQLLSGPSGLRDGGQQGSDFIWVIDTNA 186
Query: 65 SRDLTLIEACNEFIARYKQSQESDDERSNS--------SLPMLSSACPGWICYAEKQLGS 116
R+ L+ A +E + S P+L+SACPGWICYAEK
Sbjct: 187 MREACLVAAADEVTKALALEAAKASPKPGSEGAIDITPKAPILTSACPGWICYAEKTH-P 245
Query: 117 YILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL- 175
Y+LP++S +KSPQ G IK + ++ P +I+H+ +MPC+DKKLEA+R +
Sbjct: 246 YVLPHLSRLKSPQALTGTLIKSVLSERYNVPPSQIWHLAIMPCFDKKLEASRGELTSAAW 305
Query: 176 ----DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL-------------EES 218
DS +E RD D V+T E+L L + +NF +L +S
Sbjct: 306 LPSHDSTQEKIRD-------TDCVITARELLHLAAARGINFASLPRTSLPSADRTPFPDS 358
Query: 219 PLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA 278
LD L + +AG SGGY H +T + + RN+D E +
Sbjct: 359 KLDAFLFPPSRRKNQSALAGPSGGY----LYHILQTYQAQNPGSTISVARGRNADVVEYS 414
Query: 279 LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC--------------------------DY 312
+ + +T++K A YGF+N+QN+VR++K K +Y
Sbjct: 415 VVRDSETIIKAARFYGFRNIQNLVRRLKPAKASRLPGGKTGVSRRPGGAGAAIGEGVKNY 474
Query: 313 QFVEVMACPSGCLNGGGQIK 332
+VEVMACP GC NGGGQ+K
Sbjct: 475 AYVEVMACPGGCTNGGGQVK 494
>gi|392425996|ref|YP_006466990.1| hydrogenase, Fe-only [Desulfosporosinus acidiphilus SJ4]
gi|391355959|gb|AFM41658.1| hydrogenase, Fe-only [Desulfosporosinus acidiphilus SJ4]
Length = 521
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 195/395 (49%), Gaps = 26/395 (6%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIF 60
E+ D+ I N V++ +P +R L E FG+ V K L+ LG +F
Sbjct: 130 ERDDTDKVYKAIANSNIKVVVQTAPATRIGLGEEFGLPVGTNVQGKQVAALRKLGFDVVF 189
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + DLT++E E + R K + LP L+S CPGW+ + E ++P
Sbjct: 190 DTNFTADLTIMEEGTELVKRIKGELKK-------PLPQLTSCCPGWVKFVEYYYPD-LIP 241
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+SS KSPQQ G +K + +K P +I V +MPC KK E R +L S +
Sbjct: 242 NLSSAKSPQQMEGTLMKTYYAEKKNVDPKKIVSVAIMPCTAKKFECQRP----ELASAGK 297
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
D+ + P+VD VLTT E+ +I+ ++F +L + DK++ + G ++G ++
Sbjct: 298 ELNDKNVS-PDVDVVLTTRELARMIKRAGIDFSSLPDGQYDKLMGSGTGAGAIFG---TT 353
Query: 241 GGYAETVFRHAAKTLFGKVIEGHL-EFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNL 298
GG E R A + G+ L + +R +E + + G +K A+ G N
Sbjct: 354 GGVMEAAARSAYYLVTGQQPPSALWDLTPVRGMQGVKEAEINIPGVGNMKVAVISGLANA 413
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENV 354
+ ++ +++ + F+EVMACP GC GGGQ P+ P + ++ L N
Sbjct: 414 RKVMDQIQAGNATWDFIEVMACPGGCEYGGGQ--PRAAAPPSDDVRNRRAASLYKIDANA 471
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + ++NP ++ +Y ++L P SEKA++ +HT Y
Sbjct: 472 KIRNSYENPEIKQIYADFLTSPMSEKAEELLHTTY 506
>gi|378729425|gb|EHY55884.1| ferredoxin hydrogenase [Exophiala dermatitidis NIH/UT8656]
Length = 641
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 130/359 (36%), Positives = 183/359 (50%), Gaps = 52/359 (14%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFL---KSLGVKSIFDTSCSRDLT--- 69
K + S+SPQ RASLA +GIS + + FL + L + ++S + +
Sbjct: 121 NAKLFVASVSPQVRASLAATYGISERKAGFMIEQFLSGAQGLRIGGAHNSSFTYVVDTNQ 180
Query: 70 LIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQ 129
L EAC A +E + SN P+L+SACPGWICYAEK ++LP++SS+KSPQ
Sbjct: 181 LREACLVLGA-----EEVSESLSNKKRPVLTSACPGWICYAEK-THPHVLPHLSSLKSPQ 234
Query: 130 QTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEI 189
G +K + + LG P +I+H+ +MPC+DKKLEA+RE+ + E + +
Sbjct: 235 ALSGTLLKSVLSKTLGIHPSQIWHLAIMPCFDKKLEASREELTDRWWRPESQQQGQTTTQ 294
Query: 190 P--EVDSVLTTGEVLDL-----IQLKAVNFEALEESPL-DKMLTNV--------DDEGHL 233
P +VD V+T+ E+L L IQL ++ LE+ P D ++N
Sbjct: 295 PVRDVDCVITSRELLSLAEARNIQLSSLPLTPLEQPPFPDARISNFLFPSPRRRQQRAEQ 354
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEG-KTLLKFAL 291
AGSSGGY + G I + RN+D E L +G +TL+K A
Sbjct: 355 SPNAGSSGGYLYHIMATEQANHPGSTI----SIQRGRNADVVEYFLFSADGTQTLMKCAR 410
Query: 292 CYGFQNLQNIVRKVKMRK------------------CDYQFVEVMACPSGCLNGGGQIK 332
YGF+N+QN+VRK+K K DY +VEVMACP GC NGGGQIK
Sbjct: 411 YYGFRNIQNLVRKLKPAKQSRLPGAARRATAATGGAADYAYVEVMACPGGCTNGGGQIK 469
>gi|150018922|ref|YP_001311176.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
gi|149905387|gb|ABR36220.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
Length = 567
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 121/380 (31%), Positives = 199/380 (52%), Gaps = 41/380 (10%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N + VI ++P R +L E FGI P + V K+ ++ LG ++I+DTS S DLT+IE
Sbjct: 219 NHKQRVIAQVAPAVRVALGEEFGIKPGENVMGKIVAAMRKLGFENIYDTSLSADLTVIEE 278
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
EF+ + ESDD + P+ +S CP W+ Y E + + +LPY+SS KSP + G
Sbjct: 279 SKEFLKKL----ESDDNK----FPLFTSCCPAWVRYVENKY-TELLPYVSSCKSPMEMFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+ +K + +K E V VMPC KK EAARE+F+ RD IP+VD
Sbjct: 330 SVVKAYFKEKDSLENRETISVAVMPCTAKKAEAAREEFI----------RD---NIPDVD 376
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E+ +I+ + F+ +E D L+ G ++GV +GG E V R K
Sbjct: 377 YVITTAELCAMIKEIGIQFDEIEAEASDIPLSLYSGAGVIFGV---TGGVTEAVIREVVK 433
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+V++ +EF +R + L+V+ ++ ++ + G +N ++++ K+K + +
Sbjct: 434 DKSSRVLK-DIEFIGVRGMKGVKTCELQVKDES-IRIGIVSGLRNAEDLIEKIKSGEEHF 491
Query: 313 QFVEVMACPSGCLNGGGQ---IKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLY 369
F+EVMACP GC+ G GQ + + + K L K + ++ +N +V+SLY
Sbjct: 492 DFIEVMACPGGCIAGAGQPFGLMEEKNERAKGLYKIDKVTQIKR-----SEENLVVKSLY 546
Query: 370 DEWLEQPGSEKAKKHVHTEY 389
+ L+ + K+ +H Y
Sbjct: 547 EGLLKN----RTKELLHVHY 562
>gi|300853895|ref|YP_003778879.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528]
gi|300434010|gb|ADK13777.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528]
Length = 462
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 120/393 (30%), Positives = 198/393 (50%), Gaps = 37/393 (9%)
Query: 3 EKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIF 60
+ +S+ E L N + K I+ +P R ++ E FG+ PL K+ L+ LG ++
Sbjct: 94 QAKSVKEILQNKDVFK--IVQCAPAVRVAIGEDFGM-PLGTLSEGKMAAALRKLGFDKVY 150
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ DLT++E +E + R + LPM +S CP W+ YAE Q +LP
Sbjct: 151 DTNFGADLTIMEEGSELLKRVAEG---------GVLPMFTSCCPAWVKYAE-QTYPELLP 200
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
++SS KSP Q GA K + + P +IY+V+VMPC K+ E+ RE+ +
Sbjct: 201 HLSSCKSPNQMAGAIFKTYGAEINKVNPAKIYNVSVMPCTCKEFESEREEM------HDS 254
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
+RD VD+V+TT E+ L + ++F +EE D L G ++G ++
Sbjct: 255 GHRD-------VDAVITTRELAQLFKDADIDFNTIEEEQFDTPLGMYTGAGTIFG---AT 304
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQ 299
GG E R + K I ++ +R + FR +++ G LK + G +N++
Sbjct: 305 GGVMEAALRTGYELYTKKTIP-SIDLTMVRGGEGFRTAEVDL-GDIRLKVGVVSGLKNVK 362
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLET---IYLENVML 356
+++ VK KCD F+EVM CP GC++GGGQ K +E + + N+
Sbjct: 363 DVMESVKAGKCDLHFIEVMTCPQGCISGGGQPKVILDSDKEEAYNNRKKGLYNHDANLTY 422
Query: 357 ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+NP ++ +YDE+L++P K+ + +HT+Y
Sbjct: 423 RKSHENPEIKKIYDEFLDKPLGAKSHELLHTKY 455
>gi|387233129|gb|AFJ73534.1| hydrogenase [Neocallimastix frontalis]
Length = 636
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 136/394 (34%), Positives = 205/394 (52%), Gaps = 42/394 (10%)
Query: 16 KGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K V+ S +P R +LAE F + K+ L+ LG IFDT+ S DLT++E
Sbjct: 263 KRKVVVCSTAPAIRVALAEEFSTEADFDFTGKMVAGLRKLGFDYIFDTNFSADLTIMEEG 322
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY--ILPYISSVKSPQQTI 132
E I R + PM +S CPGWI EK SY + +SS KSPQQ I
Sbjct: 323 TELIDRLN---------NGGKFPMFTSCCPGWINMVEK---SYPELSDNLSSCKSPQQMI 370
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
GA IK + +KLG ++I HV++MPC KK EA R +FV + +G + P++
Sbjct: 371 GAVIKSYFAKKLGLSTEDIIHVSIMPCTAKKGEARRPEFVQK--------GKDGKDYPDI 422
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D V+TT E+L L++LK +N L + D L G+L+GV +GG E R A
Sbjct: 423 DYVITTRELLTLLKLKKINPAELPDDKFDSPLGIGSSAGNLFGV---TGGVMEAAIR-TA 478
Query: 253 KTLFGKVIEGHL---EFKTIRNSD---FREVALEV-EGKTL-LKFALCYGFQNLQNIVRK 304
+ + G +E + E K IR D V L+ +GK + ++ A+ G N+Q + K
Sbjct: 479 QVITG--VENPIPLGELKAIRGLDGIKAANVPLKTKDGKEVSVRAAVVSGGANIQKFLEK 536
Query: 305 VKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKN 362
+K ++ ++ F+E+M CP GC+NGGGQ K P+ + K ++ +Y + L +N
Sbjct: 537 IKNKELEFDFIEMMMCPGGCINGGGQPK---SADPEIVAKKMQRMYTMDDQAKLRLCHEN 593
Query: 363 PLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSI 396
P + +Y +L +P S A + +HT Y+ K+I
Sbjct: 594 PEIIDVYKNFLGEPNSHLAHELLHTHYNDRSKTI 627
>gi|338811687|ref|ZP_08623892.1| Fe-Fe hydrogenase 2 [Acetonema longum DSM 6540]
gi|337276224|gb|EGO64656.1| Fe-Fe hydrogenase 2 [Acetonema longum DSM 6540]
Length = 461
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 120/377 (31%), Positives = 191/377 (50%), Gaps = 39/377 (10%)
Query: 21 IISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
I+ +P R ++AE FG+ PL K+ LK+ G I+DT+ + DLT++E +E +
Sbjct: 109 IVQCAPAVRVAIAEEFGL-PLGSLTPGKMAAALKTAGFDRIYDTNFAADLTIMEESSELV 167
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R Q +PM +S CP W+ Y E ++P++SS KSPQQ GA K
Sbjct: 168 QRLTQ---------GGRMPMFTSCCPAWVKYVEDTY-PELIPHLSSCKSPQQMAGALFKT 217
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ P +Y ++VMPC KK E R + Y D VD+VLTT
Sbjct: 218 FGAKLDEVEPARVYSLSVMPCTCKKFECERPEMA------ASGYHD-------VDAVLTT 264
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ L++ ++F+ L E+ DK L G ++GV +GG E R A + + G+
Sbjct: 265 RELAQLLKDAGIDFDKLTEAEFDKPLGTYTGAGAIFGV---TGGVMEAALRTAYEWVTGQ 321
Query: 259 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+ L+F T+R + R+ A+++ G LK + G ++++ ++ +VK K D+ F+EV
Sbjct: 322 SLP-ELDFTTVRGGEGVRKAAVKL-GDLELKVVVVAGLKHVRELLEQVKAGKADFHFIEV 379
Query: 318 MACPSGCLNGGGQIKPK---PGQSPKELIKTLETIYLENVMLA--DPFKNPLVRSLYDEW 372
M CP GC++GGGQ PK PG P +IY + L+ NP ++ LY+ +
Sbjct: 380 MTCPVGCVSGGGQ--PKVLIPGDKPAAYAGRKGSIYNHDAALSLRKSHDNPEIQKLYEAF 437
Query: 373 LEQPGSEKAKKHVHTEY 389
L +P ++ +HT Y
Sbjct: 438 LGKPLGSESHHLLHTHY 454
>gi|414153988|ref|ZP_11410309.1| Iron hydrogenase 1 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
gi|411454520|emb|CCO08213.1| Iron hydrogenase 1 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
Length = 518
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 211/408 (51%), Gaps = 28/408 (6%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKS 58
+ E+ +D+ + + +K V++ +P +R +L E FG++P V K LK LG +
Sbjct: 127 ITERDDIDKVVQALADKNIHVVVQTAPATRVALGEEFGMAPGTFVEGKQVAALKKLGFDA 186
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT+ E E I R + + LP +S PGW+ + E +
Sbjct: 187 VFDTNFSADLTIFEEGTELIKRITG-------QIHEPLPQFTSCSPGWVKFCEYYYPD-L 238
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L ++S+ KSPQQ +GA IK + ++ G P++I+ V++MPC KK EAAR + +
Sbjct: 239 LSHMSTCKSPQQMLGALIKTYYAKEKGINPEKIFSVSIMPCTAKKFEAARPEM-----NS 293
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
Y + ++ +VD VLTT E+ LI+ K ++ +L + D ++ G ++ G
Sbjct: 294 AGKYNGKP-QMRDVDVVLTTRELARLIKSKGIDLNSLSDEKYDSLMGESSGAGLIF---G 349
Query: 239 SSGGYAETVFRHAAKTLFGK-VIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQ 296
++GG E R A + + E L IR +E A+++ G +K A+ +G
Sbjct: 350 ATGGVMEAAIRSAYFLITKQEPPEALLNLTPIRGLKGCKEAAVDIPGVGTIKVAVVHGLS 409
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIK--TLETIYLENV 354
N + I+ V+ ++ + F+E M CP GC++GGGQ P+ P + ++ + +IY +
Sbjct: 410 NARPILEAVRKKEAPWHFIEFMCCPGGCISGGGQ--PRTSLPPSDQVRQARINSIYNADA 467
Query: 355 ML---ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 399
+ +N V +LY+++LE P S A + +HT Y K++T +
Sbjct: 468 HIYVKRKSHENKEVLALYEKFLENPNSHLAHELLHTHYTDRSKTLTVK 515
>gi|355706352|gb|AES02609.1| nuclear prelamin A recognition factor-like protein [Mustela
putorius furo]
Length = 274
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/184 (49%), Positives = 125/184 (67%), Gaps = 16/184 (8%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
++ + V++S+SPQSRASLA F ++P KKLT F K +GV +FDT+ SR+ +L+E+
Sbjct: 107 SQQRLVVVSVSPQSRASLAARFQLTPTDTAKKLTAFFKKIGVHYVFDTAFSRNFSLLESQ 166
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
EF+ R++ Q S S +LP+L+SACPGWICYAEK GS+++P++S+ +SPQQ +G+
Sbjct: 167 REFVQRFR-GQAS----STQTLPVLTSACPGWICYAEKTHGSFLVPHLSTARSPQQVMGS 221
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
+K Q+ PD IYHVTVMPCYDKKLEA+R DF SQE RD VD
Sbjct: 222 LVKDFFAQQQHLTPDRIYHVTVMPCYDKKLEASRPDFF----SQEHQTRD-------VDC 270
Query: 195 VLTT 198
V+TT
Sbjct: 271 VVTT 274
>gi|358068217|ref|ZP_09154687.1| hypothetical protein HMPREF9333_01568 [Johnsonella ignava ATCC
51276]
gi|356693761|gb|EHI55432.1| hypothetical protein HMPREF9333_01568 [Johnsonella ignava ATCC
51276]
Length = 578
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 200/382 (52%), Gaps = 36/382 (9%)
Query: 14 INKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIE 72
I+ K VI+ +P R +L E FG+ P V K+ T LK++G ++DT+ + D+T++E
Sbjct: 222 ISSDKTVIVQTAPAVRVALGEEFGMEPGTVVTGKMVTALKNMGFDYVYDTNFAADVTIVE 281
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI-LPYISSVKSPQQT 131
+EF R+K + LP+L+S CP WI + E I +P SS KSP +
Sbjct: 282 EASEFADRFK---------NGGRLPILTSCCPSWIKFVEHNFKELIDIP--SSCKSPHEM 330
Query: 132 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 191
G+ K ++ +KLG +P++I V+VMPC KK EA R + +S +
Sbjct: 331 FGSLAKSYLAEKLGKKPEDIVVVSVMPCVAKKYEAQRPELGNSGNS-------------D 377
Query: 192 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHA 251
VD V++T E+ +I +F L +S D+ + G ++ GS+GG AE R A
Sbjct: 378 VDIVISTRELARMIVDSTQDFVNLPDSSFDRFMGQSTGAGTIF---GSTGGVAEATLRTA 434
Query: 252 AKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
+ L G+ ++ + F +R + +E + + G T + A+ G N + ++ V+
Sbjct: 435 YEFLTGEELK-EVNFTALRGFEKIKETTVNI-GGTQINVAVASGLGNARKLLNDVRDGIK 492
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIY-LENVM-LADPFKNPLVRSL 368
Y +E+MACP GC++GGGQ P + + L K + +IY ++N + KNP V L
Sbjct: 493 QYHIIEIMACPGGCIDGGGQ--PYMHGNTEILTKRMNSIYNIDNKKHIRQSHKNPEVLQL 550
Query: 369 YDEWLEQPGSEKAKKHVHTEYH 390
Y+E+L + EKA K +HT ++
Sbjct: 551 YNEYLGEFYGEKAHKLLHTHFY 572
>gi|453089698|gb|EMF17738.1| iron hydrogenase [Mycosphaerella populorum SO2202]
Length = 615
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 182/376 (48%), Gaps = 79/376 (21%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-GVKS----------IFDTS 63
GK + S+SPQ+RASLA + +S ++ L GVKS + DT+
Sbjct: 123 GNGKIFVASISPQARASLAATYNVSERDAGYMVSQLLSGPHGVKSAGKHNSGFAWVVDTN 182
Query: 64 CSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYIS 123
R+ +L+ A +E D + P+++SACPGWICYAEK S+ILP++S
Sbjct: 183 AMREASLVAAADEV----------DQLQDGQKKPIITSACPGWICYAEKTH-SHILPHLS 231
Query: 124 SVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYR 183
+KSPQ G IK + +K G P ++H+ +MPC+DKKLEA+R + T+
Sbjct: 232 RLKSPQALTGVLIKSVLAKKYGIDPKNVWHLAIMPCFDKKLEASRSELT------SHTWH 285
Query: 184 DE-GLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGH--LYGVA--- 237
E G + +VD V+T E+L L + + ++F L + P+ + + + L+G +
Sbjct: 286 GETGDAVRDVDCVITARELLMLAESRDISFPGLPKHPVTDLAPFPEPRVNEFLFGRSRGQ 345
Query: 238 ----------GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-LEVEGKTL 286
G+SGGY H KT H++ + RN D E + + +G +
Sbjct: 346 KRKREDATSIGTSGGY----LWHVLKTQQTHHPGSHIKVQRGRNQDVSEYSVVNADGLAV 401
Query: 287 LKFALCYGFQNLQNIVRKVKMRKC------------------------------DYQFVE 316
K A YGF+N+QN+VRK+K K DY +VE
Sbjct: 402 FKAARYYGFRNIQNLVRKLKPAKASRMPGASSTGRRVGGTRRPGGATKAGDDSQDYAYVE 461
Query: 317 VMACPSGCLNGGGQIK 332
VMACP GC NGGGQIK
Sbjct: 462 VMACPGGCTNGGGQIK 477
>gi|154248924|ref|YP_001409749.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1]
gi|154152860|gb|ABS60092.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1]
Length = 667
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/394 (30%), Positives = 202/394 (51%), Gaps = 51/394 (12%)
Query: 4 KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDT 62
+ +D+ I +GK VI ++P RASL E FG+ + + ++ + LK +G K +FD
Sbjct: 205 RNDVDKVYKAIEEGKYVIGMIAPAVRASLQEEFGMEDDIAMAGRMVSILKMIGFKKVFDV 264
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
+ + DL E +EF+ R + ++ LP +S CPGW+ +AE+ Y LP +
Sbjct: 265 AFAADLVAYEEAHEFMERLENGEK---------LPQFTSCCPGWVKFAEQYYPEY-LPNL 314
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
SSVKSPQ +GA IK + +++G P++I V++MPC KK EA RE+F
Sbjct: 315 SSVKSPQMALGAIIKKYYAREIGVNPEDIVLVSIMPCTAKKFEAEREEF----------- 363
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 242
EG ++D VLTT E++ + + ++ + +E D+ G + G +GG
Sbjct: 364 --EG----DIDIVLTTRELVKIFKATGIDIKMVEPESFDRPYGLSSQSGLSF---GKTGG 414
Query: 243 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-------LEVEGKTLLKFALCYGF 295
+V KVIE + K++ + RE+A +E+E +++ +G
Sbjct: 415 VLGSVV---------KVIEDKVNVKSV---NTREIAQGVNLTEVELENGKVVRGVAVFGL 462
Query: 296 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM 355
N++ ++ +K + + VEVMAC GC+ GGGQ P ++ K L+ +V+
Sbjct: 463 GNVRKVISDIKEGRLNADVVEVMACNYGCIGGGGQPYPNDVRTRARRAKILKETQSVDVL 522
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
++ P +N +R LY ++ P S +A + +HTEY
Sbjct: 523 IS-PTENFHMRELYTKYFGAPLSHEAHEVLHTEY 555
>gi|451848135|gb|EMD61441.1| hypothetical protein COCSADRAFT_39174 [Cochliobolus sativus ND90Pr]
Length = 621
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 184/382 (48%), Gaps = 74/382 (19%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-GVKS----------IFD 61
N +GK + S+SPQ+RASLA F +S ++ ++ L G+++ + D
Sbjct: 126 NETEGKLFVASVSPQTRASLAAVFNVSEVEAGNMISQLLSGPNGLRTSSNKGSDFTWVID 185
Query: 62 TSCSRDLTLIEACNEFI-----ARYKQSQESDDERSNSSLP---MLSSACPGWICYAEKQ 113
T+ R+ L+ A +E K S + E + ++P +L+SACPGWICYAEK
Sbjct: 186 TNAVREACLVAAADEVTNALSPTAAKASPQPGSEGAIDTIPKAPILTSACPGWICYAEKT 245
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARED--- 170
Y+LP++S +KSPQ G +K + ++ P +I+H+ +MPC+DKKLEA+R +
Sbjct: 246 H-PYVLPHLSRLKSPQALTGTLVKSVLSERYHVHPSQIWHLAIMPCFDKKLEASRGELTS 304
Query: 171 --FVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP--------- 219
++ + EE RD D V+T E+L L + +NF L SP
Sbjct: 305 APWLPSYNQSEEKIRD-------TDCVITARELLHLAAARGINFANLPRSPLSQSDRIPF 357
Query: 220 ----LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFR 275
LD L + AG SGGY H +T + + RN+D
Sbjct: 358 PDPKLDAFLFPSSRRKNQSVAAGPSGGY----LYHILQTYQAQNPGSLISVVRGRNADVV 413
Query: 276 EVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC------------------------- 310
E ++ +T++K A YGF+N+QN+VR++K +
Sbjct: 414 EYSVVQGSETIIKAARFYGFRNIQNLVRRLKPARASRLPGGKTGVSRKPGGAGAAGEGVK 473
Query: 311 DYQFVEVMACPSGCLNGGGQIK 332
DY +VEVMACP GC NGGGQ+K
Sbjct: 474 DYAYVEVMACPGGCTNGGGQVK 495
>gi|14250935|emb|CAC39231.1| HymC protein [Eubacterium acidaminophilum DSM 3953]
Length = 578
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 125/382 (32%), Positives = 200/382 (52%), Gaps = 41/382 (10%)
Query: 18 KAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K V++ ++P RA+L E FG +P+ +V K+ T LK LG + +FDT+ + DLT++E
Sbjct: 222 KHVVVQVAPAVRAALGEMFG-NPIGTRVTGKMFTALKMLGFQKVFDTNFAADLTIMEEGT 280
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
E + R K + +LPM++S PGWI Y E +L ++SS KSPQQ +GA
Sbjct: 281 ELLGRIK---------NGGTLPMITSCSPGWIRYVE-HFYPELLDHVSSCKSPQQMMGAV 330
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+K + +K P+ + V+VMPC KK E+A+E+ RD VD V
Sbjct: 331 LKSYYAEKNNIAPENMIVVSVMPCIAKKTESAKEEM-----KNVHGTRD-------VDIV 378
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
LTT E+ +I+ + F L++S D+ + ++ G++GG E R A +
Sbjct: 379 LTTRELGKMIKEARIEFNDLQDSNPDEFFGDYTGAAVIF---GATGGVMEAAIRTVADIV 435
Query: 256 FGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
G+ +E +E+ +R + +E A+++ G +K A+ +G N ++ V+ K DY F
Sbjct: 436 SGQELE-DIEYTAVRGLEGIKEAAVKI-GDLEVKVAVAHGTANAGKLMDLVRDGKADYHF 493
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKT----LETIYLENVMLADPFK---NPLVRS 367
+E+M C GC+ GGGQ P KE + + +Y E+ L D K N V+
Sbjct: 494 IEIMGCSGGCVTGGGQ--PHVDSRTKEKVNVKLERAKALYTED-KLRDKRKSHHNESVKR 550
Query: 368 LYDEWLEQPGSEKAKKHVHTEY 389
LY+E+L +P KA + +HT Y
Sbjct: 551 LYEEYLGKPNGHKAHELLHTHY 572
>gi|452848147|gb|EME50079.1| hypothetical protein DOTSEDRAFT_165043 [Dothistroma septosporum
NZE10]
Length = 612
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 121/373 (32%), Positives = 185/373 (49%), Gaps = 72/373 (19%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS----------IFDTSCSR 66
K + S+SPQSRAS+A + ++ + + L G++S I DT+ R
Sbjct: 114 KLFVASVSPQSRASIAATYNVTEREAGYMIAQLLSGPAGLRSGGQHGSGFTWIVDTNVMR 173
Query: 67 DLTLIEACNEFIARYKQSQESDDERSNSSL--PMLSSACPGWICYAEKQLGSYILPYISS 124
+ TL+ +E +QS + E S + P+++SACPGWICYAEK +ILP++S
Sbjct: 174 EATLVAVADEV----QQSNTAPIEGSTEAQKKPVITSACPGWICYAEKTH-PHILPHLSK 228
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
+KSPQ G +K + +K G P ++H+ VMPC+DKKLEAAR + + +
Sbjct: 229 LKSPQALTGVLLKSVLAKKYGMSPQNVWHLAVMPCFDKKLEAARSEL-----TSHTWHGQ 283
Query: 185 EGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT------NVDD--------- 229
EG + +VD V+T E+L L + + ++F L + PL L V+D
Sbjct: 284 EGEAVRDVDCVITARELLMLAESRDISFPRLPKQPLSGDLAPDFPEPAVNDFLFSRQRGQ 343
Query: 230 ---EGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-LEVEGKT 285
G G+SGGY H +T + + + + RN+D E + ++ +G+
Sbjct: 344 KRKRGQETDTIGTSGGY----LWHILQTKRAQHVGSQVMSQRGRNNDVSEYSVVDADGRA 399
Query: 286 LLKFALCYGFQNLQNIVRKVKMRKC--------------------------DYQFVEVMA 319
+ K A YGF+N+QN+VR++K K +Y +VEVMA
Sbjct: 400 VFKAARYYGFRNIQNLVRRLKPAKASRMPGASRKAGTSRRPGGAAMGGNEGEYSYVEVMA 459
Query: 320 CPSGCLNGGGQIK 332
CP GC NGGGQIK
Sbjct: 460 CPGGCTNGGGQIK 472
>gi|256002756|gb|ACU52623.1| hydrogenase [Clostridium beijerinckii]
Length = 567
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 119/380 (31%), Positives = 197/380 (51%), Gaps = 41/380 (10%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N + V+ ++P R +L E FGI P + V K+ ++ LG ++I+DTS S DLT+IE
Sbjct: 219 NHKQRVVAQVAPAVRVALGEEFGIKPGENVMGKIVAAMRKLGFENIYDTSLSADLTVIEE 278
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
EF+ + ESDD + P+ +S CP W+ Y E + +LPY+SS KSP + G
Sbjct: 279 SKEFLKKL----ESDDNK----FPLFTSCCPAWVRYVENKYPE-LLPYVSSCKSPMEMFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+ +K + +K E V VMPC KK EAARE+F+ + IP+VD
Sbjct: 330 SVVKAYFKEKDSLENRETISVAVMPCTAKKAEAAREEFIRE-------------NIPDVD 376
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E+ +I+ + F+ +E D L+ G ++GV +GG E V R K
Sbjct: 377 YVITTAELCAMIKEIGIQFDEIEAEASDIPLSLYSGAGVIFGV---TGGVTEAVIREVIK 433
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+V++ +EF +R + L+V+ ++ ++ + G +N +N++ K+K + +
Sbjct: 434 DKSSRVLK-DIEFIGVRGMKGVKTCELQVKDES-IRIGIVSGLRNAENLIEKIKSGEEHF 491
Query: 313 QFVEVMACPSGCLNGGGQ---IKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLY 369
F+EVMACP GC+ G GQ + + + K L K + ++ +N +V+SLY
Sbjct: 492 DFIEVMACPGGCIAGAGQPFGLMEEKNERAKGLYKIDKVTQIKR-----SEENLVVKSLY 546
Query: 370 DEWLEQPGSEKAKKHVHTEY 389
+ L+ + K+ +H Y
Sbjct: 547 EGLLKN----RTKELLHVHY 562
>gi|115525856|ref|YP_782767.1| hydrogenase, Fe-only [Rhodopseudomonas palustris BisA53]
gi|115519803|gb|ABJ07787.1| hydrogenases, Fe-only [Rhodopseudomonas palustris BisA53]
Length = 619
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 122/394 (30%), Positives = 191/394 (48%), Gaps = 36/394 (9%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIF 60
E+ D L I + ++ +P R + E FG+ + V ++ + +G+ +
Sbjct: 230 ERDETDRALDYICDPNLVTVVQFAPAVRVAFGEEFGMPAGTNVEGQVIAACRKIGIDVVL 289
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + D+ ++E E ++R KQ + P +S CP WI +AE ILP
Sbjct: 290 DTNFAADVVIMEEGAELLSRLKQGRR----------PTFTSCCPAWINFAEINYPE-ILP 338
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+SS KSPQQ + K ++ +KLG D I +++MPC KK EA R D Q
Sbjct: 339 LLSSTKSPQQVLSTLAKTYLPEKLGIPADRIRVISIMPCIAKKDEAVRPQLSH--DGQ-- 394
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK-MLTNVDDEGHLYGVAGS 239
PE D VLTT E L++ + ++ + +E S D ++ G ++G +
Sbjct: 395 ---------PETDVVLTTREFARLLRREGIDLKTIERSNFDTPFMSGYSGAGAIFG---T 442
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKT-LLKFALCYGFQN 297
+GG E R + G+ +E +E +R + RE +++ G +K A+ +G +
Sbjct: 443 TGGVMEAALRTIYAIVNGRELE-RIELTQLRGFERLREATVDLGGAVGEVKVAMVHGLGD 501
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVM 355
+ +V V K DY F+EVMACP GC++GGG ++ K P L K ETIY
Sbjct: 502 TRALVEAVLAGKADYDFIEVMACPGGCVDGGGSLRSKKAYLPLAL-KRRETIYNVDRTAK 560
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ NP V++LY E LE P SEKA +HT Y
Sbjct: 561 VRQSHNNPQVQALYRELLEAPNSEKAHHLLHTHY 594
>gi|449305199|gb|EMD01206.1| hypothetical protein BAUCODRAFT_29654 [Baudoinia compniacensis UAMH
10762]
Length = 602
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 185/377 (49%), Gaps = 74/377 (19%)
Query: 13 NINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFL-----------KSLGVKSIFD 61
+ + K + S+SPQ+RASLA + I+ + ++ L + G D
Sbjct: 107 DTSDAKVFVASVSPQARASLAATYNITEREAGYMISQLLSGPHGLRSGGAQGAGFTWTID 166
Query: 62 TSCSRDLTLIEACNEFIARYKQSQESDDERSNS-SLPMLSSACPGWICYAEKQLGSYILP 120
T+ R++ L+ A +E +Q++ + S+ P+L+SACPGWICYAEK ++ILP
Sbjct: 167 TNAMREVALVAAADE-------AQQAFNAPSDGLKRPVLTSACPGWICYAEKTH-AHILP 218
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
++S +KSPQ G IK + +K G P++++H+ VMPC+DKKLEA+R + +
Sbjct: 219 HLSKLKSPQALTGTLIKTVLAKKFGIPPEKVWHMAVMPCFDKKLEASRGEL-----TSHT 273
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKML------TNVD------ 228
+ EG + +VD V+T E+L L + + + F L +PL + NVD
Sbjct: 274 WHGQEGDAVRDVDCVITARELLMLAESRNIRFPNLPRAPLSEQYAPPFPDANVDRFLNSR 333
Query: 229 DEGH------LYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-LEV 281
GH G+SGGY V + G ++ H RN D E A L
Sbjct: 334 RRGHKRKREEADAEIGTSGGYLHHVLKTQQALHPGSILSRHRG----RNVDVSEYAVLSS 389
Query: 282 EGKTLLKFALCYGFQNLQNIVRKVKMRKC--------------------------DYQFV 315
G+ + + A YGF+N+QN+VR++K K +Y +V
Sbjct: 390 SGQEVFRAARYYGFRNIQNLVRRLKPAKASRLPGATRKPGGARKPGAASGGTNEGEYAYV 449
Query: 316 EVMACPSGCLNGGGQIK 332
EVMACP GC NGGGQIK
Sbjct: 450 EVMACPGGCTNGGGQIK 466
>gi|334340941|ref|YP_004545921.1| hydrogenase Fe-only [Desulfotomaculum ruminis DSM 2154]
gi|334092295|gb|AEG60635.1| hydrogenase, Fe-only [Desulfotomaculum ruminis DSM 2154]
Length = 657
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 169/324 (52%), Gaps = 32/324 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K V+ ++P RA+L E FG+ + V K+ T L+ G +FDT + D+T +E NEF
Sbjct: 222 KTVVCQIAPAPRAALGEMFGLGSVDVTGKIVTALRKSGFDKVFDTVFTADMTTVEESNEF 281
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R S LP+ +S CPGW+ YAE + +L +S+ +SPQQ G+ +K
Sbjct: 282 LGRLT---------SGGKLPLFTSCCPGWVKYAE-EFHPELLENLSTCRSPQQMFGSVLK 331
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+ LG P+E++ V++MPC KK EA R +F+ + +VD+VLT
Sbjct: 332 KKYAKDLGITPEEMFVVSIMPCTAKKYEAKRPEFMTD-------------GVYDVDAVLT 378
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
T E L + + F+ LEE D+ + G L+ G++GG E+V R+ A L
Sbjct: 379 TVEAAQLFKEAGILFDNLEEGIFDQPMEQTTGSGVLF---GTTGGVMESVVRYVAGKLLN 435
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
EG ++ + R D ++A G T L A+ G + +++K++ + + VEV
Sbjct: 436 A--EGRIDVEFTRGLDDTKIADLNVGDTKLTLAIVNGLAAAEELIKKIQSGELEVHAVEV 493
Query: 318 MACPSGCLNGGGQIKPKPGQSPKE 341
MACP+GC+ GGGQ P Q+ ++
Sbjct: 494 MACPAGCVGGGGQ----PAQNDRK 513
>gi|396462406|ref|XP_003835814.1| similar to iron-sulfur cluster assembly associated protein Nar1
[Leptosphaeria maculans JN3]
gi|312212366|emb|CBX92449.1| similar to iron-sulfur cluster assembly associated protein Nar1
[Leptosphaeria maculans JN3]
Length = 632
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 122/375 (32%), Positives = 175/375 (46%), Gaps = 67/375 (17%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS----------IFDTSCSR 66
K + S+SPQ+RASLA F I+ + +T L G++S + DT+ R
Sbjct: 123 KLFVASVSPQARASLAAVFNITEAEAGNLITQLLSGPSGLRSGGHQRSDFTWVIDTNSVR 182
Query: 67 DLTLIEACNEFIARYKQSQESDDERSNS--------SLPMLSSACPGWICYAEKQLGSYI 118
+ L+ A +E + R S P+L+SACPGWICYAEK Y+
Sbjct: 183 EACLVAAADEVAHALSPEALNAPTRPGSEGAIDTTPKQPILTSACPGWICYAEKTH-PYL 241
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
LP++S +KSPQ G +K + Q+ P +I+H+ +MPC+DKKLEA+R + S
Sbjct: 242 LPHLSRLKSPQALTGTLLKSVLSQRYNVAPSQIWHLAIMPCFDKKLEASRSELTSA--SW 299
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL-------------DKMLT 225
Y ++ +VD V+T EVL L + +N +L ++PL D L
Sbjct: 300 LPGYEASQDKVRDVDCVITAREVLHLAAARGINLASLPKTPLAPADRTPFPDPKLDTFLF 359
Query: 226 NVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKT 285
+ AGSSGGY H +T + L RN+D E A+ +
Sbjct: 360 PPSHRKNQPAAAGSSGGY----LYHILQTYQARHPGSTLTISRGRNADVVEYAVMQGPQI 415
Query: 286 LLKFALCYGFQNLQNIVRKVKMRKCD----------------------------YQFVEV 317
L++ A YGF+N+QN+VRK+K + Y +VEV
Sbjct: 416 LIRAARFYGFRNIQNLVRKLKPARASRLPGARTGVVRRPPGAAAAASAREDVGQYAYVEV 475
Query: 318 MACPSGCLNGGGQIK 332
MACP GC NGGGQIK
Sbjct: 476 MACPGGCTNGGGQIK 490
>gi|150018615|ref|YP_001310869.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
gi|149905080|gb|ABR35913.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
Length = 461
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 192/377 (50%), Gaps = 39/377 (10%)
Query: 21 IISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
I+ +P R SL E FG+ + K+ L+ LG ++DT+ DLT++E +E I
Sbjct: 108 IVQCAPAVRVSLGEEFGLKAGSLTAGKMAAALRRLGFNRVYDTNFGADLTIMEEGSELIK 167
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY--ILPYISSVKSPQQTIGATIK 137
R + E LPM +S CP W+ + E+ SY +L ++SS KSPQQ G K
Sbjct: 168 RVTEGGE---------LPMFTSCCPAWVKFMEQ---SYPELLNHLSSCKSPQQMAGTIFK 215
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+ + P +IY+V +MPC K+ E RE+ Q+ ++D VD V+T
Sbjct: 216 TYGAKIDKVNPKKIYNVAIMPCTCKQFECDREEM------QDSGFKD-------VDIVIT 262
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
T E LI+ ++F+ L++ D L + G+++GV +GG E R + L
Sbjct: 263 TREFAQLIRDNEIDFKNLKDEEFDLPLGSYTGAGNIFGV---TGGVMEAALRSGYEMLTK 319
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
K I +LE +R S+ VA K LK A+ G +N+ I+ +K KCD+ F+EV
Sbjct: 320 KSIP-NLELNFVRGSEGIRVAEVKLPKITLKVAVVSGLKNVVQILEDIKEGKCDFDFIEV 378
Query: 318 MACPSGCLNGGGQIKPK---PGQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEW 372
M CP GC++GGGQ PK L+ + IY + + + +NP ++ LY+E+
Sbjct: 379 MTCPEGCVSGGGQ--PKFILDIDRRNALVSRKKGIYKHDSELEIRKSHENPFIKKLYEEF 436
Query: 373 LEQPGSEKAKKHVHTEY 389
L +P EK+ +HT++
Sbjct: 437 LIEPLGEKSHHLLHTKF 453
>gi|357037998|ref|ZP_09099797.1| hydrogenase, Fe-only [Desulfotomaculum gibsoniae DSM 7213]
gi|355360554|gb|EHG08312.1| hydrogenase, Fe-only [Desulfotomaculum gibsoniae DSM 7213]
Length = 523
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 199/395 (50%), Gaps = 23/395 (5%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ E+ + L I + K V++ +P +R +L E FG+ P V + LK LG
Sbjct: 134 ITERDDTQKVLQAIQDPNKHVVVQTAPATRVALGEEFGLPPGTWVAGQQVAALKRLGFDG 193
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDTS + DLT++E E I R +N LP +S PGW+ + E +
Sbjct: 194 VFDTSFTADLTIMEEATELIKRITGG-------TNMPLPQFTSCSPGWVKFCE-YFYPDL 245
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
LP++SS KSPQQ +GA +K + + P+ I+ V++MPC KK E R + ++S
Sbjct: 246 LPHMSSCKSPQQMLGALVKTYYAKAKNIAPENIFSVSIMPCTAKKFEMQRPE----MNSS 301
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+ EGL ++D+VLTT E+ +I+ + ++ L E D ++ ++G
Sbjct: 302 AHYWHQEGLR--DIDAVLTTRELARMIKQQNIDLNKLPEQNYDPLMGESTGGAIIFG--- 356
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHL-EFKTIRN-SDFREVALEVEGKTLLKFALCYGFQ 296
++GG E R A + + +L +R +E A++V G +K A+C+G
Sbjct: 357 ATGGVMEAAVRTAYYFITEQQPPANLLTLTPVRGLEGVKEAAVDVPGVGTVKVAVCHGMS 416
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVML 356
N + ++ V+ + FVE M CP GC++GGGQ + S + ++ + ++Y +
Sbjct: 417 NGRQVLEAVRKGNAPWHFVEFMCCPGGCISGGGQPRSAVPPSDEVRMQRINSLYQADARA 476
Query: 357 A--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ +N V +LY +L+ P SE A++ +HT+Y
Sbjct: 477 QRRESHENAEVLALYQNFLKHPMSELAEELLHTKY 511
>gi|333924613|ref|YP_004498193.1| hydrogenase, Fe-only [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333750174|gb|AEF95281.1| hydrogenase, Fe-only [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 516
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 118/393 (30%), Positives = 202/393 (51%), Gaps = 27/393 (6%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K V++ +P +R L E FG++P V K LK LG ++FDT+ S DLT+ E
Sbjct: 140 DKNMHVVVQTAPATRVGLGEEFGMAPGTFVEGKQVAALKKLGFDAVFDTNFSADLTIFEE 199
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
E I R + LP +S PGW+ + E +LP++SS KSPQQ +G
Sbjct: 200 GTELIRRITGDLKE-------PLPQFTSCSPGWVKFCEYYYPD-LLPHMSSCKSPQQMLG 251
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A IK + ++ G P++I+ V++MPC KK E R +++S + L +VD
Sbjct: 252 ALIKTYYAKEKGIDPEKIFSVSIMPCTAKKFECQRP----EMNSAGKHVGKPALR--DVD 305
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+VLTT E+ L++ + ++ L ++ D ++ G ++ G++GG E R A
Sbjct: 306 AVLTTRELARLLKSQGIDINNLPDAKYDSLMGESSGAGLIF---GATGGVMEAAIRSAYF 362
Query: 254 TLFGK-VIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
+ + L IR +E A+++ G LK A+ +G N + ++ V+ ++
Sbjct: 363 LITKQDPPAAFLNLTPIRGLKGCKEAAVDIPGVGTLKVAVVHGLSNARPVLEAVRKKEAP 422
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIK--TLETIYLENVML---ADPFKNPLVR 366
+ F+E M CP GC++GGGQ P+ P + ++ + ++Y + + ++N V
Sbjct: 423 WHFIEFMCCPGGCISGGGQ--PRTSLPPSDTVRQARINSLYNADANIYKERKSYENKEVL 480
Query: 367 SLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 399
+LY+++LE P S A + +HTEY K +TA+
Sbjct: 481 ALYEKFLENPNSHLAHELLHTEYVDRGKKLTAK 513
>gi|336371429|gb|EGN99768.1| hypothetical protein SERLA73DRAFT_179963 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384195|gb|EGO25343.1| hypothetical protein SERLADRAFT_465344 [Serpula lacrymans var.
lacrymans S7.9]
Length = 399
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 109/272 (40%), Positives = 152/272 (55%), Gaps = 49/272 (18%)
Query: 98 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 157
ML+SACPGWICYAEK S +LP+I+ KSPQQ +G +K I + G RPDEIYHV+VM
Sbjct: 1 MLASACPGWICYAEKAH-SEMLPFIARTKSPQQIMGTLVKSWIGNQWGKRPDEIYHVSVM 59
Query: 158 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEA--- 214
PCYDKKLEA+R+DF ++ S +VD V+TTGE+ +++ K +
Sbjct: 60 PCYDKKLEASRQDFYNEMYSTR-----------DVDCVITTGELELMMREKGWDLSVPVD 108
Query: 215 LEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEG--HLEFKTIRNS 272
E++P + +E L + S G + + H+ + +V +G L FKT+R S
Sbjct: 109 SEDAPPFTPSSPSHEEQFLPELL-SHPGTSSGSYLHSLISAMSRVSDGPTSLSFKTVRTS 167
Query: 273 DFREVALEVE--GKTLLKFALCYGFQNLQNIVRKV----------------------KMR 308
D+ E L + G+ + K A CYGF+NLQN+VRKV +++
Sbjct: 168 DYEEYTLRNQETGEVVFKGAKCYGFRNLQNVVRKVGREAGVQVGKGAAGRMAGGIRARLK 227
Query: 309 KC-------DYQFVEVMACPSGCLNGGGQIKP 333
K Y +VEVMACP GC+NGGGQ+KP
Sbjct: 228 KNADGEADRGYDYVEVMACPGGCVNGGGQLKP 259
>gi|390602423|gb|EIN11816.1| iron hydrogenase [Punctularia strigosozonata HHB-11173 SS5]
Length = 640
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 125/382 (32%), Positives = 176/382 (46%), Gaps = 99/382 (25%)
Query: 38 ISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP 97
+S V +++ F +LG + I+DT+ +R + L+E +EF R + + E LP
Sbjct: 142 VSLQAVLRRVQAFCGTLGFEHIYDTTFARHVALLEHAHEFSERKRSTGEG-------QLP 194
Query: 98 MLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVM 157
ML+SACPGW+CYAEK +LP+IS KSPQQ +G +K + + PD +YHV VM
Sbjct: 195 MLASACPGWVCYAEKTHAE-MLPFISRTKSPQQVMGTLVKEWLAKSWNKTPDMVYHVAVM 253
Query: 158 PCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEAL-- 215
PCYDKKLEA+R+DF Y D + +VD V+TTGE+ L++ K + A
Sbjct: 254 PCYDKKLEASRQDF----------YNDV-FKTRDVDCVITTGELELLMREKGWDLSAPVK 302
Query: 216 EESPLDKMLTNVDDEGHLYGVAG-SSGGYAETVFRH------AAKTLFGKVIEGHLEF-- 266
E+ + D L G SSG Y T+ AA + +EG E
Sbjct: 303 GEAEGSRSAATEDQIPELLSHPGSSSGSYLHTLISAITRGSPAAASPGNVQLEGRREIGG 362
Query: 267 --------------------------------KTIRNSDFRE--VALEVEGKTLLKFALC 292
K +RN+DF E V G+ + + A C
Sbjct: 363 TDSVPYASEVAVSGGRPTPPDGNDGGEYEVSSKIMRNTDFEEYTVTRRSTGEVMFRGARC 422
Query: 293 YGFQNLQNIVRKVKM----------------------------------RKCDYQFVEVM 318
YGF+NLQN+VRKV ++ Y +VEVM
Sbjct: 423 YGFRNLQNVVRKVGRDAGVQVGRGAAGRLTGGVRGRRRGAVSAAGADGEKERPYDYVEVM 482
Query: 319 ACPSGCLNGGGQIKPKPGQSPK 340
ACP GC+NGGGQ++P P P+
Sbjct: 483 ACPGGCVNGGGQLRP-PAPQPQ 503
>gi|323701562|ref|ZP_08113235.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
gi|323533571|gb|EGB23437.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
Length = 529
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 118/393 (30%), Positives = 202/393 (51%), Gaps = 27/393 (6%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K V++ +P +R L E FG++P V K LK LG ++FDT+ S DLT+ E
Sbjct: 153 DKNMHVVVQTAPATRVGLGEEFGMAPGTFVEGKQVAALKKLGFDAVFDTNFSADLTIFEE 212
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
E I R + LP +S PGW+ + E +LP++SS KSPQQ +G
Sbjct: 213 GTELIRRITGDLKE-------PLPQFTSCSPGWVKFCEYYYPD-LLPHMSSCKSPQQMLG 264
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A IK + ++ G P++I+ V++MPC KK E R +++S + L +VD
Sbjct: 265 ALIKTYYAKEKGIDPEKIFSVSIMPCTAKKFECQRP----EMNSAGKHVGKPALR--DVD 318
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+VLTT E+ L++ + ++ L ++ D ++ G ++ G++GG E R A
Sbjct: 319 AVLTTRELARLLKSQGIDINNLPDAKYDSLMGESSGAGLIF---GATGGVMEAAIRSAYF 375
Query: 254 TLFGK-VIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
+ + L IR +E A+++ G LK A+ +G N + ++ V+ ++
Sbjct: 376 LITKQDPPAAFLNLTPIRGLKGCKEAAVDIPGVGTLKVAVVHGLSNARPVLEAVRKKEAP 435
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIK--TLETIYLENVML---ADPFKNPLVR 366
+ F+E M CP GC++GGGQ P+ P + ++ + ++Y + + ++N V
Sbjct: 436 WHFIEFMCCPGGCISGGGQ--PRTSLPPSDTVRQARINSLYNADANIYKERKSYENKEVL 493
Query: 367 SLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 399
+LY+++LE P S A + +HTEY K +TA+
Sbjct: 494 ALYEKFLENPNSHLAHELLHTEYVDRGKKLTAK 526
>gi|312144188|ref|YP_003995634.1| hydrogenase, Fe-only [Halanaerobium hydrogeniformans]
gi|311904839|gb|ADQ15280.1| hydrogenase, Fe-only [Halanaerobium hydrogeniformans]
Length = 574
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 190/375 (50%), Gaps = 37/375 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI+ +P +A+L E F I+ V K+ L+ LG +F T + DLT++E +E
Sbjct: 228 KHVIVQTAPSIQATLGEEFDITNGTVVTGKMVAALRRLGFDKVFSTDFAADLTILEEGSE 287
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ + + +LP ++S CPGW+ YAE S +L ++S+ KSP Q A
Sbjct: 288 FLKKLE---------GEGTLPHITSCCPGWVKYAEHNY-SDLLNHLSTAKSPMQMFSALG 337
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + Q+ G + ++Y V +MPC KK E RE+ + D+VL
Sbjct: 338 KTYYPQQSGVKAKDVYTVAIMPCTAKKFEKDREEI-------------NATRFKDTDAVL 384
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ +NF L++ D+++ G ++G ++GG AE R + L
Sbjct: 385 TTRELARMIKEMGINFSKLDDEDFDELMGTSTGAGTIFG---TTGGVAEAAVRTVKEKLT 441
Query: 257 GKVIEG-HLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G+ +E +L F+ + +F EV + G +K A+ G N + ++ K CD F+
Sbjct: 442 GEPLEQLNLGFRGV---NFAEVEI---GDRTVKIAIANGLGNAEKLLNACKDGNCDCDFI 495
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN-VMLADPFKNPLVRSLYDEWLE 374
EVMACP GC+ GGGQ P+P K++ + + +++ + KNP V LY E+L
Sbjct: 496 EVMACPHGCVGGGGQ--PRPATYEKKVKRGVGLSGIDDKSAVRKSHKNPQVIKLYKEFLG 553
Query: 375 QPGSEKAKKHVHTEY 389
+P S ++ +HT Y
Sbjct: 554 KPLSGESHHLLHTTY 568
>gi|336267324|ref|XP_003348428.1| hypothetical protein SMAC_02924 [Sordaria macrospora k-hell]
gi|380092082|emb|CCC10350.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 581
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 183/367 (49%), Gaps = 66/367 (17%)
Query: 15 NKGKAVIISLSPQSRASLAEHFG--ISPLQVFKKLTT-FLKSLGVKS----------IFD 61
+ K + S+SPQSRASLA G ++ Q + + FL G+ + D
Sbjct: 120 DAAKLYVASVSPQSRASLAAACGNGVTEQQAGRMIEQLFLGEQGLARGGNWGNKFTWVVD 179
Query: 62 TSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPY 121
T+ +R+ TL+ +E + S ++ P+L+++CPGW+CYAEK Y+LP+
Sbjct: 180 TNTAREATLVLGSDEVLG------GSIAPSDKAATPILTASCPGWVCYAEKTH-PYVLPH 232
Query: 122 ISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE---DFVFQLDSQ 178
+S VKSPQ +G +K + + L PD I+H+ VMPC+DKKLEA+RE D V+ D +
Sbjct: 233 LSRVKSPQALMGTLLKTSLSRILNISPDRIWHLAVMPCFDKKLEASREELTDAVWAGDGK 292
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGV-- 236
G + +VD V+T+ E+L L + +NF L S + D H +
Sbjct: 293 ------PGRGVRDVDCVITSKEILMLAASRGLNFFGLPASAPSQHPQFPDPSIHDFLFRP 346
Query: 237 --------AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GKTLL 287
AG+SGG + R+ L K + ++ RN+D E + E G+ L
Sbjct: 347 GHRQQSREAGTSGGNMHFILRN----LQAKNVGSQIQTVPGRNADVVEYKVIAESGEVLF 402
Query: 288 KFALCYGFQNLQNIVRKVKMRKC----------------------DYQFVEVMACPSGCL 325
K A YGF+N+QN+VRK+K K DY +VEVMACP GC
Sbjct: 403 KAARYYGFRNIQNLVRKLKPAKASRMPGGKPFGSAKRPAGKANGLDYGYVEVMACPGGCT 462
Query: 326 NGGGQIK 332
NGGGQIK
Sbjct: 463 NGGGQIK 469
>gi|419760455|ref|ZP_14286734.1| hydrogenase [Thermosipho africanus H17ap60334]
gi|407514558|gb|EKF49373.1| hydrogenase [Thermosipho africanus H17ap60334]
Length = 583
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 127/377 (33%), Positives = 193/377 (51%), Gaps = 30/377 (7%)
Query: 17 GKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K ++ +P R ++ E FG+ P V K+ ++ LG +FDT+ + DLT++E
Sbjct: 221 NKILVAQTAPSVRVAIGEEFGMEPGSVSTGKMVAAIRRLGFDYVFDTNFAADLTIMEEGT 280
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
E I R K PM +S CPGWI EK+ +I SS KSPQQ +
Sbjct: 281 ELIGRIKDG---------GPFPMFTSCCPGWINLLEKEYPEFI-NNASSAKSPQQMMSPI 330
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+K + +K+G P++I V++MPC KK E R Q++ ++G EI D V
Sbjct: 331 VKTYFAKKIGVDPEDIIMVSIMPCTAKKDEITR--------PQQKIKLEDGREIKTTDYV 382
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
+TT E+ LI++K +NF L++ D L ++GV +GG E R A + +
Sbjct: 383 ITTRELAKLIKMKQINFIGLDDEDFDNPLGTSTGAAAIFGV---TGGVMEAALRTAYELI 439
Query: 256 FGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
K + LEF +R D RE +++EGK L K A+ +G N++ ++ ++ Y F
Sbjct: 440 TNKKLP-KLEFNAVRGLDGIRETEIDIEGKKL-KVAIAHGTANVKKLLDDIRDGVRYYDF 497
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEW 372
+E+MACP GC+ GGGQ K P L K IY E L +NP ++ LY+E+
Sbjct: 498 IEIMACPGGCIGGGGQPK---SLDPDILKKRASAIYSIDELSTLRRSHENPDIQKLYEEF 554
Query: 373 LEQPGSEKAKKHVHTEY 389
LE+P S A + +HT Y
Sbjct: 555 LEKPNSHIAHELLHTYY 571
>gi|385800509|ref|YP_005836913.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Halanaerobium praevalens DSM 2228]
gi|309389873|gb|ADO77753.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Halanaerobium praevalens DSM 2228]
Length = 573
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 185/374 (49%), Gaps = 35/374 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
+ VI+ +P +A+L E FG+ + V K+ LK +G +F T + DLT++E +E
Sbjct: 227 RHVIVQTAPSIQATLGEEFGMETGTIVTGKMVAALKRMGFDKVFSTDFAADLTILEEGSE 286
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ + E LP ++S CPGW+ +AE +L ++SS KSP Q A
Sbjct: 287 FLKKLNGEGE---------LPHITSCCPGWVKFAEHNFPD-LLKHLSSAKSPMQMFSALG 336
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + + G P++IY V VMPC KK E RE+ G + + D+VL
Sbjct: 337 KTYYPDQTGVDPEKIYTVAVMPCTAKKFEKDREEI-------------NGSDFKDTDAVL 383
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E +I+ +NF L E D ++ G ++G ++GG AE R + L
Sbjct: 384 TTREFARMIKEMGINFNKLPEEDFDALMGKSTGAGTIFG---TTGGVAEAAVRTVKEKLT 440
Query: 257 GKVIEG-HLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G+ +E L F+ I ++ R G L+K + G N I+ +V+ + D F+
Sbjct: 441 GEPLERLDLGFRGINKAEVRI------GDRLIKVGIANGLGNASKILEQVRKGESDLDFI 494
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQ 375
EVMACP GC+ GGGQ +P + ++ L I ++ + +NP + LY+E+L +
Sbjct: 495 EVMACPHGCVGGGGQPRPATNEKKEKRGSGLSNID-DSSKIRKSHENPQIIKLYEEFLGE 553
Query: 376 PGSEKAKKHVHTEY 389
P ++ +HT+Y
Sbjct: 554 PLGGESHHLLHTKY 567
>gi|333980293|ref|YP_004518238.1| hydrogenase, Fe-only [Desulfotomaculum kuznetsovii DSM 6115]
gi|333823774|gb|AEG16437.1| hydrogenase, Fe-only [Desulfotomaculum kuznetsovii DSM 6115]
Length = 574
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 128/392 (32%), Positives = 206/392 (52%), Gaps = 35/392 (8%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIF 60
EK+ ++E I + K V++ +P RA+L E FG P V K+ ++ LG +F
Sbjct: 207 EKEHIEEVWHAIFDPSKFVVVQDAPAVRAALGEEFGYPPGTLVTGKMLAAVRRLGFDRVF 266
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + DLT+IE +E + R K+ LPM++S PGW+ + E +LP
Sbjct: 267 DTNFAADLTIIEEGHELLKRIKE---------GGVLPMITSCSPGWVKFIE-HFYPELLP 316
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
++S+ KSP Q +GA +K + QK+G P ++ V+VMPC KK E R +
Sbjct: 317 HLSTCKSPHQMLGALVKTYYAQKVGVDPKDMVVVSVMPCTAKKFECNRPEM------NGS 370
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
Y+D VD V+TT E+ +I+ ++F +LE+ D L G ++ G++
Sbjct: 371 GYKD-------VDYVITTRELAKMIKQAGIDFASLEDGYYDDPLGEYSGAGTIF---GAT 420
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQ 299
GG E R + + GK +E LEF +R D +E + VEG LK A+ +G N +
Sbjct: 421 GGVMEAALRTVYELVTGKTLE-RLEFTAVRGLEDIKEAVVPVEGLGELKVAVAHGLGNAR 479
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLA 357
I+ ++K DY F+E+M CP GC+ GGGQ P P +++ +Y E+ + +
Sbjct: 480 KILDRIKDGSADYHFIEIMCCPGGCVGGGGQ--PLPVNDEIRMLRA-RALYQEDEKLRIR 536
Query: 358 DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+NP ++ LY+E+L +P EK+ + +HT Y
Sbjct: 537 KSHENPSIKKLYEEFLGRPLGEKSHQLLHTRY 568
>gi|19547863|gb|AAK60409.1| hydrogenase [Neocallimastix frontalis]
Length = 636
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 136/400 (34%), Positives = 206/400 (51%), Gaps = 42/400 (10%)
Query: 16 KGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K V+ S +P R + AE F + K+ L+ LG IFDT+ S DLT++E
Sbjct: 263 KRKVVVCSTAPAIRVAPAEEFSTEADFDFTGKMVAGLRKLGFDYIFDTNFSADLTIMEEG 322
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY--ILPYISSVKSPQQTI 132
E I R + PM +S CPGWI EK SY + +SS KSPQQ I
Sbjct: 323 TELIDRLN---------NGGKFPMFTSCCPGWINMVEK---SYPELSDNLSSCKSPQQMI 370
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
GA IK + +KLG ++I HV++MPC KK EA R +FV + +G + P++
Sbjct: 371 GAVIKSYFAKKLGLSTEDIIHVSIMPCTAKKGEARRPEFVQK--------GKDGKDYPDI 422
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D V+TT E+L L++LK +N L + D L G+L+GV +GG E R A
Sbjct: 423 DYVITTRELLTLLKLKKINPAELPDDKFDSPLGIGSSAGNLFGV---TGGVMEAAIR-TA 478
Query: 253 KTLFGKVIEGHL---EFKTIRNSD---FREVALEV-EGKTL-LKFALCYGFQNLQNIVRK 304
+ + G +E + E K IR D V L+ +GK + ++ A+ G N+Q + K
Sbjct: 479 QVITG--VENPIPLGELKAIRGLDGIKAANVPLKTKDGKEVSVRAAVVSGGANIQKFLEK 536
Query: 305 VKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKN 362
+K ++ ++ F+E+M CP GC+NGGGQ K P+ + K ++ +Y + L +N
Sbjct: 537 IKNKELEFDFIEMMMCPGGCINGGGQPK---SADPEIVAKKMQRMYTMDDQAKLRLCHEN 593
Query: 363 PLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHN 402
P + +Y +L +P S A + +HT Y+ K+I H+
Sbjct: 594 PEIIDVYKNFLGEPNSHLAHELLHTHYNDRSKTIHDMGHH 633
>gi|344302035|gb|EGW32340.1| nuclear architecture related protein [Spathaspora passalidarum NRRL
Y-27907]
Length = 494
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 132/395 (33%), Positives = 187/395 (47%), Gaps = 84/395 (21%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
++ + S E L + K + S+S Q+RASLA + + Q+ + L LK +G + I
Sbjct: 69 LVAQHSHKELLKALETDKVFVASVSHQARASLALAYNVDVEQLDQLLIHLLKKMGFRYIV 128
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
TS R L+L+ N I R E P LSS CPGW+ YAEK YI+P
Sbjct: 129 GTSLGRKLSLVNESNSMIQRKMDKTEG---------PTLSSICPGWVLYAEKT-HPYIIP 178
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+S+VKSPQQ G +K+ ++L +++YH+T+MPC+DKKLE+AR +
Sbjct: 179 RLSNVKSPQQVTGCILKNLTSEELNVPRNQVYHLTIMPCFDKKLESARPEV--------- 229
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQ-----LKAVNF------EALEESPLDKM----LT 225
D G +VD VLT EV+ LI+ L A ++ + +ES +K
Sbjct: 230 ---DGGTS--DVDCVLTPREVVALIEEMGYDLIAKDYTFGNTSQVYKESAPNKWPFVEYA 284
Query: 226 NVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK--VIEGHLEFKTI--RNSDFREVALEV 281
+D G +SGGY T R + L K I EFK + RN+D E+ L
Sbjct: 285 WSNDSG------SASGGYGYTYLRLYQQYLISKENYIADQFEFKVVKGRNADIYEMRLMY 338
Query: 282 EGKTLLKFALCYGFQNLQNIVRKVK---------------------------------MR 308
+ + + GF+N+QN+VRK+K
Sbjct: 339 QDTQIASSGIVNGFKNIQNLVRKLKPGNTVAKPNALLARRRGRGGSTAKAKKTSEEADPS 398
Query: 309 KCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI 343
KCDY VE+MACPSGC+NGGGQI P G K+ I
Sbjct: 399 KCDY--VEIMACPSGCINGGGQISPAEGIVEKDWI 431
>gi|160624920|gb|ABO42543.2| hydrogenase [Clostridium butyricum]
Length = 574
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 182/378 (48%), Gaps = 34/378 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI++++P R S+ E F + + V KL + L+ LG +FD + D+T++E E
Sbjct: 223 KHVIVAMAPAVRTSMGELFKMGYGVDVTGKLYSSLRQLGFDKVFDINFGADMTIMEEATE 282
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
FI R +N PM +S CP W+ AE +L +SS KSPQQ GA
Sbjct: 283 FIERI---------NNNGPFPMFTSCCPAWVRQAENYY-PELLGNLSSAKSPQQIFGAAS 332
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + G P +Y VT+MPC KK EA R + +EGL +D+VL
Sbjct: 333 KTYYPTVEGLDPKSVYTVTIMPCTAKKYEADRTEM-----------ENEGLR--NIDAVL 379
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ +NF ALE+ D + G ++G ++GG E R A +
Sbjct: 380 TTRELAKMIKDAKINFAALEDEKADPAMGEYTGAGVIFG---ATGGVMEAALRSAKDFVE 436
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
K + +E+K +R D +E +E+ GK A+ G NL V +M + Y FV
Sbjct: 437 DKDLT-DIEYKQVRGLDGIKEATVEIGGKNY-NVAVINGSANLTKFVEGGQMDEKQYHFV 494
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN----VMLADPFKNPLVRSLYDE 371
EVM+CP GC+NGGGQ ++ + L N + KN + +Y+E
Sbjct: 495 EVMSCPGGCVNGGGQPHVAAKDRDTANVRAVRASVLYNQDKTAVKRKSHKNEALMKMYNE 554
Query: 372 WLEQPGSEKAKKHVHTEY 389
++ PG KA + +H +Y
Sbjct: 555 YMGMPGQHKAHELLHLKY 572
>gi|402571795|ref|YP_006621138.1| hydrogenase, Fe-only [Desulfosporosinus meridiei DSM 13257]
gi|402252992|gb|AFQ43267.1| hydrogenase, Fe-only [Desulfosporosinus meridiei DSM 13257]
Length = 525
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 188/377 (49%), Gaps = 25/377 (6%)
Query: 20 VIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
V++ +P +R L E FG+ V K L+ LG +FDT+ + DLT++E E +
Sbjct: 149 VVVQTAPATRIGLGEEFGMPVGTNVQGKQVAALRKLGFDVVFDTNFTADLTIMEEGTELV 208
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R + +P ++S CPGW+ + E ++P +SS KSPQQ GA IK
Sbjct: 209 KRVTGEL-------HHPIPQMTSCCPGWVKFVE-YFYPELIPNLSSAKSPQQMEGALIKT 260
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ +K P +I+ V++MPC KK E R +++S + D + P+VD VLTT
Sbjct: 261 YFAEKKEVDPKKIFSVSIMPCTAKKFECQRP----EMNSASKELNDSNVS-PDVDVVLTT 315
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ +I+ ++F +L E DK++ G ++ G++GG E R A + G+
Sbjct: 316 RELARMIKRAGIDFASLPEEEYDKLMGTGTGAGVIF---GTTGGVMEAAVRSAYFLITGQ 372
Query: 259 VIEGHL-EFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVE 316
L +R +E A+ + G +K A+ G N + ++ ++K + F+E
Sbjct: 373 QPPAALWNLTPVRGMQGVKEAAVNIPGVGDVKVAVISGLANARKVMDQMKAGNAPWAFME 432
Query: 317 VMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV----MLADPFKNPLVRSLYDEW 372
+MACP GC GGGQ P+ P + + L N+ L + NP ++ +Y ++
Sbjct: 433 IMACPGGCEYGGGQ--PRASSPPSDEDRNRRAASLYNIDAKAKLRNSHDNPEIKQIYADF 490
Query: 373 LEQPGSEKAKKHVHTEY 389
L P SEKA++ +HT Y
Sbjct: 491 LTAPMSEKAEELLHTHY 507
>gi|406698812|gb|EKD02039.1| hypothetical protein A1Q2_03739 [Trichosporon asahii var. asahii
CBS 8904]
Length = 595
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 169/300 (56%), Gaps = 42/300 (14%)
Query: 21 IISLSPQSRASLAEHFG--ISPLQVFKKLTTFLKS--LGVKSIFDTSCSRDLTLIEACNE 76
++S++PQ+ ASL+ +G I L + +++ +FL S G ++ DT+ +R L L ++ +E
Sbjct: 90 VLSIAPQTLASLSAAYGGSIPLLTLLRRIRSFLSSEERGGWTVLDTTFARHLALRQSVSE 149
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F +R + SQ +LPML+SACPGW+CYAEK G +LP +SS +SPQ GA +
Sbjct: 150 FRSRQQSSQ---------NLPMLASACPGWVCYAEKAQGD-LLPLLSSTRSPQAMQGAIV 199
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K H+ +K G + +E+YHVT MPCYDKKLEA+R DF D+ + E D VL
Sbjct: 200 KRHLAEKWGKKANEVYHVTAMPCYDKKLEASRSDFY-----------DDVAKTKETDCVL 248
Query: 197 TTGEVLDLIQLKAVNFEAL-----EESPLDKMLTNVD--DEGH---LYGVAGSSGGYAET 246
TTGE LDL+ L + F+ E+ P+ + D G L SSG Y
Sbjct: 249 TTGE-LDLL-LSELGFDPSAPVPGEDDPVPPASGDYSRPDAGFPELLTHPGSSSGSYLMA 306
Query: 247 VFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCYGFQNLQNIVRKV 305
+ A+ + + L + +RNS D E LE G+ L K A CYGF+NLQN+VRKV
Sbjct: 307 LLVSLAQ----EHPDAALHVRRLRNSPDNEEYFLESGGQVLFKGARCYGFRNLQNLVRKV 362
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 24/28 (85%)
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKE 341
FVEVMACP GC+NGGGQ+KP G++ ++
Sbjct: 429 FVEVMACPGGCVNGGGQMKPTTGKAERD 456
>gi|374297589|ref|YP_005047780.1| hydrogenase, Fe-only [Clostridium clariflavum DSM 19732]
gi|359827083|gb|AEV69856.1| hydrogenase, Fe-only [Clostridium clariflavum DSM 19732]
Length = 1148
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 197/383 (51%), Gaps = 42/383 (10%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K VI ++P R+ +++ + I + + LK LG +FD + + DLT++E EF
Sbjct: 706 KTVIGFVAPAVRSLISKTYNIPFEKTSAFMAGLLKKLGFDKVFDFTFAADLTIMEETTEF 765
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R + +P +S CPGWI + E++ I+P++S+ KSPQ +GAT+K
Sbjct: 766 LTRIS---------NKGVMPQFTSCCPGWINFVERRYPE-IIPHLSTCKSPQMMMGATVK 815
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+H + G ++++ V+++PC KK EAAR +F + RD VD+VLT
Sbjct: 816 NHYAKLAGLNKEDLFVVSIVPCIAKKYEAARPEFA------PDGIRD-------VDAVLT 862
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
T E++++++L+ ++ +E D+ V G L+ G+SGG AE R A + L G
Sbjct: 863 TTEMIEMVRLENIDVSQVEPQEFDEPYRQVSGAGILF---GASGGVAEAALRMAVEKLTG 919
Query: 258 KVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRK-VKMRKCDYQFV 315
K + L+F+ IR + +E ++V ++ A+ G QN + I+ K ++ Y +
Sbjct: 920 KALTDQLDFEEIRGFEGVKEATVDVNNAK-VRVAVVSGLQNAEPIIEKIIQGVDVGYDLI 978
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETI--YLENVMLADPFK----NPLVRSLY 369
EVMACP GC+ G G P E I +E L N+ ++ NP + LY
Sbjct: 979 EVMACPGGCICGAGHPVP-------EKIDDMEKRQQILVNIDKISKYRKSQENPDILRLY 1031
Query: 370 DEWLEQPGSEKAKKHVHTEYHPV 392
+++ +P S A + +HT Y P+
Sbjct: 1032 EDFYGEPNSHLAHELLHTHYTPM 1054
>gi|154498755|ref|ZP_02037133.1| hypothetical protein BACCAP_02746 [Bacteroides capillosus ATCC
29799]
gi|150272145|gb|EDM99349.1| hydrogenase, Fe-only [Pseudoflavonifractor capillosus ATCC 29799]
Length = 584
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/384 (31%), Positives = 194/384 (50%), Gaps = 42/384 (10%)
Query: 18 KAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K V++ +P R +L E FG+ P+ V K+ T L+ LG +FD + D T++E
Sbjct: 226 KHVVVGPAPSIRVTLGECFGM-PIGTNVEGKMVTALRRLGFDKVFDVDNAADFTIMEEGT 284
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
EF+ R + + +LP+++S PGWI + E+ ++P +SS KSPQQ G
Sbjct: 285 EFLHRLQ---------NGGTLPLITSCSPGWIRFCEQHYPD-MVPNLSSCKSPQQMFGTL 334
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+K + +K+G P +I+ V++MPC KK E RE+ R G +P VD
Sbjct: 335 VKTYYAEKMGINPRDIFVVSIMPCTAKKYEVRREEM-----------RQHGW-LP-VDVS 381
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
LTT E+ +I + F+ L + D+ML ++ G+SGG E R T+
Sbjct: 382 LTTRELGRMITRAGLLFQNLPDGEFDEMLGVSTGAATIF---GASGGVMEAALR----TV 434
Query: 256 FGKVIEGH---LEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
V +G LEF +R + +E + ++ GKT ++ + G N + ++ VK +
Sbjct: 435 VEIVTKGEMKPLEFTEVRGMTGIKEASYDLPGKT-VRVCVTSGLANAKKVLDGVKSGEMQ 493
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRS 367
Y F+E+MACP GC+NGGGQ I++L L E + +NP+V+
Sbjct: 494 YDFIEIMACPGGCINGGGQPIQHADVRNWTDIRSLRAKALYTQDEGMTYRRSHENPIVQQ 553
Query: 368 LYDEWLEQPGSEKAKKHVHTEYHP 391
+Y E+L +PG +A + +HT Y P
Sbjct: 554 VYKEYLGEPGGHRAHELLHTTYVP 577
>gi|338729902|ref|YP_004659294.1| hydrogenase, Fe-only [Thermotoga thermarum DSM 5069]
gi|335364253|gb|AEH50198.1| hydrogenase, Fe-only [Thermotoga thermarum DSM 5069]
Length = 583
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 125/377 (33%), Positives = 196/377 (51%), Gaps = 37/377 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K +I+ +P +R +L E FG+ P + K+ L+ LG +FDT+ + DLT++E +E
Sbjct: 223 KVLIVQTAPATRVALGEEFGLEPGSISTGKMVAALRRLGFDYVFDTNFAADLTIMEEGSE 282
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ R K + PM +S CP WI EK +I P +SS KSP Q +GA +
Sbjct: 283 FLERLK---------NGGPFPMFTSCCPAWINMMEKLYPQFI-PNVSSAKSPHQMLGAVV 332
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +K+ P I+ V++MPC KK + R + +P VD VL
Sbjct: 333 KTYFAKKINVDPKNIFLVSIMPCTAKKDDIIRPQHMIN-------------GVPAVDVVL 379
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ LI++K + F L + D L G ++GV +GG E R A +
Sbjct: 380 TTRELAKLIKIKKIPFATLPDENYDDPLGESTGAGAIFGV---TGGVMEAALRTAYELGL 436
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
GK + G +EF+++R + +E ++ GK LK A+ +G N++ ++ K+ + Y FV
Sbjct: 437 GKPL-GKIEFESVRGLEGIKEATIDFNGKK-LKVAVAHGGLNVRRLLDKIVAGEVYYDFV 494
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKE-LIKTLETIYL--ENVMLADPFKNPLVRSLYDEW 372
E+MAC GC+ GGGQ P K+ L+K ++ IY E ++ +NP ++ LY E+
Sbjct: 495 EIMACSGGCIGGGGQ----PKSLDKDVLVKRMKAIYTIDELSVIRKSHENPSIKKLYQEF 550
Query: 373 LEQPGSEKAKKHVHTEY 389
LE P S A + +HT Y
Sbjct: 551 LEHPLSHVAHETLHTTY 567
>gi|425766147|gb|EKV04773.1| Iron-sulfur cluster assembly associated protein Nar1, putative
[Penicillium digitatum Pd1]
gi|425774549|gb|EKV12852.1| Iron-sulfur cluster assembly associated protein Nar1, putative
[Penicillium digitatum PHI26]
Length = 604
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 133/421 (31%), Positives = 187/421 (44%), Gaps = 68/421 (16%)
Query: 11 LSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-----------GVKSI 59
+ + +GK + S+SPQ RASLA +GIS + + L G +
Sbjct: 109 IEDSGEGKIFVASVSPQVRASLATIYGISEKEAGYMINQLLSGPQGLRGGGKHRNGFTWV 168
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP---MLSSACPGWICYAEKQLGS 116
DT+ R+ L+ +E S +S+ LP +LSSACPGWICYAEK
Sbjct: 169 VDTNAMREAVLVLTADEVSDSLSSGDSSTAGQSDDPLPKRPILSSACPGWICYAEKT-HP 227
Query: 117 YILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLD 176
+ILP++S +KSPQ G +K + + LG P I+H+ VMPC+DKKLEA+RE+
Sbjct: 228 FILPHLSRLKSPQALSGTFLKTVLSKSLGVNPSRIWHLAVMPCFDKKLEASREELTDVSW 287
Query: 177 SQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEA-------------LEESPLDKM 223
Q + E + +VD V+T E+L L + + + E LD
Sbjct: 288 RQGNSTASETQPVRDVDCVITARELLSLASSRGFSLPSLPLQPLPSSFTPPFPEKILDSF 347
Query: 224 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE-VALEVE 282
L+ G+SGGY H + L RN D E V L E
Sbjct: 348 LSFERSRAKQSIATGTSGGY----LHHILMNFQARNPGSELVINRGRNVDVVEYVLLSQE 403
Query: 283 GKTLLKFALCYGFQNLQNIVRKVKMRK--------------------------------C 310
G T+LK A YGF+N+QN+VRK+K +
Sbjct: 404 GPTILKAARYYGFRNIQNLVRKLKPARVSRLPGAKPAARPATGRRQPISRNNVTTSSSGA 463
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYD 370
DY +VEVMACP GC NGGGQI+ + KE I + + + L+ M P + + D
Sbjct: 464 DYAYVEVMACPGGCTNGGGQIRV---EDAKEAIGSSQGMALDASMKPSPHEQRAWLARVD 520
Query: 371 E 371
E
Sbjct: 521 E 521
>gi|51894427|ref|YP_077118.1| iron hydrogenase [Symbiobacterium thermophilum IAM 14863]
gi|51858116|dbj|BAD42274.1| iron hydrogenase [Symbiobacterium thermophilum IAM 14863]
Length = 456
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/380 (31%), Positives = 191/380 (50%), Gaps = 35/380 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
+ V++ ++P R ++AE FG+ PL K+ L+ LG ++ T + DLT++E N
Sbjct: 101 RYVMVQVAPAVRVAIAEEFGM-PLGSLAPGKMAAALRRLGFDRVYSTDFTADLTIMEEGN 159
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
E I R + +LPM +S CP W+ Y E Q +LP++S+ KSPQQ GA
Sbjct: 160 ELIERVTK---------GGTLPMFTSCCPAWVKYLE-QTYPELLPHLSTCKSPQQMAGAL 209
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
K + + P ++Y V+VMPC K E+ R + + YRD VD V
Sbjct: 210 FKTYGAKVDNVDPAKVYSVSVMPCTCKDFESGRPEM------KASGYRD-------VDVV 256
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
+TT E+ LI+ ++F AL E D+ L G ++G ++GG E R A + +
Sbjct: 257 ITTRELAHLIKDAGIDFNALPEEEYDRPLGLYTGAGTIFG---ATGGVMEAALRTAYEVI 313
Query: 256 FGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
K I L+ K +R + R +++E LK + G +N+ ++ +VK K D+ F
Sbjct: 314 AKKPIP-ELDLKFVRGGEGVRYATVKIE-DLELKVCVVSGLKNVAPVLEQVKAGKADFHF 371
Query: 315 VEVMACPSGCLNGGGQIKP-KPGQSPKELIKTLETIYLENVMLA--DPFKNPLVRSLYDE 371
+EVM CP GC++GGGQ K P + E+ Y + L +NP ++ +Y E
Sbjct: 372 MEVMTCPVGCVSGGGQPKALLPSDRLCARMARTESTYRHDAQLPHRKSNENPDIKKIYKE 431
Query: 372 WLEQPGSEKAKKHVHTEYHP 391
+L +P EK+ +HT Y P
Sbjct: 432 FLGKPLGEKSHHLLHTSYTP 451
>gi|325291003|ref|YP_004267184.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Syntrophobotulus glycolicus DSM 8271]
gi|324966404|gb|ADY57183.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Syntrophobotulus glycolicus DSM 8271]
Length = 577
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 192/382 (50%), Gaps = 47/382 (12%)
Query: 20 VIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
V++ +P R +L E FG+ P+ V K+ T LK LG +FDT+ S DLT++E E
Sbjct: 225 VVVQTAPAVRIALGEEFGL-PVGTDVEGKMVTALKKLGFDKVFDTNFSADLTIMEEGTEL 283
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
I+R + LP+++S PGWI + E + + L +SS KSPQQ GA K
Sbjct: 284 ISRI---------NNGGKLPLITSCSPGWIKFCEHKYPDF-LDNLSSCKSPQQMFGAVAK 333
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+ +K G P +++ V+VMPC KK EA RE+ V E+ ++D +T
Sbjct: 334 SYYPEKAGIDPKKVFVVSVMPCTAKKYEADREELVVD-------------ELKDIDVAIT 380
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA---GSSGGYAETVFRHAAKT 254
T E+ +I+ + F L +S D M+ G G A ++GG E R A
Sbjct: 381 TRELAKMIKQAGIQFTDLADSKADSMM------GEGTGAAVIFANTGGVMEAAIRTVADI 434
Query: 255 LFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
L G+ ++ +++ +R + +E ++ + G LK A+ ++ K++ + Y
Sbjct: 435 LTGEDLK-DIDYIAVRGQEGIKEASVNI-GDLELKVAVANSTGAASKLLDKIRAGESTYH 492
Query: 314 FVEVMACPSGCLNGGGQ--IKPKPGQSPKELIKTLETIYLENVMLADP----FKNPLVRS 367
F+E+M C GC+NGGGQ I K S E +K L T + N +P KN ++
Sbjct: 493 FIEIMGCAGGCINGGGQPIIMDK---SKTEEVKQLRTAGIYNKDKNNPKRKSHKNEEIQK 549
Query: 368 LYDEWLEQPGSEKAKKHVHTEY 389
LY E+L++PGS KA +HT Y
Sbjct: 550 LYAEYLDKPGSHKAHHILHTHY 571
>gi|255657360|ref|ZP_05402769.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile QCD-23m63]
gi|296451826|ref|ZP_06893545.1| periplasmic hydrogenase [Clostridium difficile NAP08]
gi|296879778|ref|ZP_06903752.1| periplasmic hydrogenase [Clostridium difficile NAP07]
gi|296259305|gb|EFH06181.1| periplasmic hydrogenase [Clostridium difficile NAP08]
gi|296429249|gb|EFH15122.1| periplasmic hydrogenase [Clostridium difficile NAP07]
Length = 593
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 196/379 (51%), Gaps = 35/379 (9%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K +++ ++P R ++ E FG+ P + K+ LK+LG + +FDT+ D T++E
Sbjct: 225 KEKTIVVQVAPAVRVAIGEEFGLEPGSISTGKMVAALKALGFEHVFDTNFGADFTIMEEA 284
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
EFI R ++ + +LP+L+S CP W+ + E L SS KSPQ G+
Sbjct: 285 TEFIERIQKGE---------NLPILTSCCPAWVNFLEHNYPDK-LNLASSCKSPQGMFGS 334
Query: 135 TIKHHICQK-LGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
K++ K LG P+E+Y V+VMPC KK EA+RE+ + G I +VD
Sbjct: 335 IAKNYYAPKILGINPEELYVVSVMPCVAKKYEASREEL-----------SESG--ILDVD 381
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+TT E+ +I+ A++ L++ D L ++G +SGG E R + +
Sbjct: 382 LSITTRELAKMIKEAAIDLPNLQDQDFDNPLGKSTGAASIFG---ASGGVLEAALRTSYE 438
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ K ++ ++ F +R RE +++V+G T+ + +N + I+ KV+ +C Y
Sbjct: 439 KITNKTLD-NVNFTNVRGLKGIREASIDVDGTTV-NVCIVNTLKNARKIMDKVRSGECKY 496
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYD 370
+EVMACP GC+ G GQ P + + + + +Y N + +NP ++++Y
Sbjct: 497 HIIEVMACPGGCVGGAGQ--PYHHGNTEIVDRRANALYEIDRNKAIRKSHENPDLQAIYK 554
Query: 371 EWLEQPGSEKAKKHVHTEY 389
++ +P S+ A K++HT Y
Sbjct: 555 DFFGEPNSDVAHKYLHTHY 573
>gi|254977029|ref|ZP_05273501.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile QCD-66c26]
gi|255094356|ref|ZP_05323834.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile CIP 107932]
gi|255316109|ref|ZP_05357692.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile QCD-76w55]
gi|255518770|ref|ZP_05386446.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile QCD-97b34]
gi|255651948|ref|ZP_05398850.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile QCD-37x79]
gi|260684912|ref|YP_003216197.1| iron-only hydrogenase, catalytic subunit [Clostridium difficile
CD196]
gi|260688570|ref|YP_003219704.1| iron-only hydrogenase, catalytic subunit [Clostridium difficile
R20291]
gi|306521697|ref|ZP_07408044.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile QCD-32g58]
gi|384362581|ref|YP_006200433.1| iron-only hydrogenase, catalytic subunit [Clostridium difficile
BI1]
gi|260211075|emb|CBA66447.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile CD196]
gi|260214587|emb|CBE07153.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile R20291]
Length = 593
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 196/379 (51%), Gaps = 35/379 (9%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K +++ ++P R ++ E FG+ P + K+ LK+LG + +FDT+ D T++E
Sbjct: 225 KEKTIVVQVAPAVRVAIGEEFGLEPGSISTGKMVAALKALGFEHVFDTNFGADFTIMEEA 284
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
EFI R ++ + +LP+L+S CP W+ + E L SS KSPQ G+
Sbjct: 285 TEFIERIQKGE---------NLPILTSCCPAWVNFLEHNYPDK-LNLASSCKSPQGMFGS 334
Query: 135 TIKHHICQK-LGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
K++ K LG P+E+Y V+VMPC KK EA+RE+ + G I +VD
Sbjct: 335 IAKNYYAPKILGINPEELYVVSVMPCVAKKYEASREEL-----------SESG--ILDVD 381
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+TT E+ +I+ A++ L++ D L ++G +SGG E R + +
Sbjct: 382 LSITTRELAKMIKEAAIDLPNLQDQDFDNPLGKSTGAASIFG---ASGGVLEAALRTSYE 438
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ K ++ ++ F +R RE +++V+G T+ + +N + I+ KV+ +C Y
Sbjct: 439 KITNKTLD-NVNFTNVRGLKGIREASIDVDGTTV-NVCIVNTLKNARKIMDKVRSGECKY 496
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYD 370
+EVMACP GC+ G GQ P + + + + +Y N + +NP ++++Y
Sbjct: 497 HIIEVMACPGGCVGGAGQ--PYHHGNTEIVDRRANALYEIDRNKAIRKSHENPDLQAIYK 554
Query: 371 EWLEQPGSEKAKKHVHTEY 389
++ +P S+ A K++HT Y
Sbjct: 555 DFFGEPNSDVAHKYLHTHY 573
>gi|406876161|gb|EKD25809.1| hypothetical protein ACD_79C01496G0001 [uncultured bacterium]
Length = 573
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 119/393 (30%), Positives = 202/393 (51%), Gaps = 32/393 (8%)
Query: 1 MLEKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ E+ S+ + ++ +N K V + +P +L E F + P L T L+ L
Sbjct: 204 LREQSSIKDVINALNDPEKIVTVQHAPAVSVTLGEEFNMDPGADTAGVLVTALRRLKFDW 263
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDTS S DLT++E +E + R K +N LPML+S PGWI + E Q
Sbjct: 264 VFDTSFSADLTIMEEASELVHRIK---------NNGKLPMLTSCSPGWIKFVE-QFYPEF 313
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+ +S+ KSPQQ +GA +K + K P +I++V++MPC KK E+ R +
Sbjct: 314 MDNLSTCKSPQQMMGAVVKSYFAGKNKIDPKKIFNVSIMPCTAKKFESDRPEM------- 366
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+ G++ +VD+VLTT E++ +I+++ ++ L D G L+ G
Sbjct: 367 ----GNNGIQ--DVDAVLTTRELVRMIRMRGIDLNKLNPDIADNPFGERSSAGKLF---G 417
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
SGG E R A L G+ ++ +L+ + +R D F++ + + G + A+ G +N
Sbjct: 418 GSGGVMEAALRTAYNMLTGRNLD-NLKIEPLRGLDSFKQTTVNINGLD-VGVAVVSGLKN 475
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLA 357
+ ++ ++K + D F+EVM CP GC+ GGGQ + K+ +K L TI + +
Sbjct: 476 ARKLLDEIKAGRNDLHFIEVMTCPGGCVAGGGQPGGIEVDAIKKRLKGLYTIDSGDKIRC 535
Query: 358 DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
+NP ++ LY E+L +P S K+ + +HT Y+
Sbjct: 536 S-HENPSIQMLYKEFLHEPLSHKSHELLHTHYN 567
>gi|345859646|ref|ZP_08811983.1| hydrogenase family protein [Desulfosporosinus sp. OT]
gi|344327242|gb|EGW38683.1| hydrogenase family protein [Desulfosporosinus sp. OT]
Length = 525
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 187/377 (49%), Gaps = 25/377 (6%)
Query: 20 VIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
V++ +P +R L E FG+ V K L+ LG +FDT+ + DLT++E E +
Sbjct: 150 VVVQTAPSTRIGLGEEFGMPVGTNVQGKQVAALRKLGFDVVFDTNFTADLTIMEEGTELV 209
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R + P L+S CPGW+ + E ++P +SS KSPQQ G +K
Sbjct: 210 KRVTGELKK-------PTPQLTSCCPGWVKFVE-YFYPDLIPNLSSAKSPQQMEGTLMKT 261
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ +K P +I+ V +MPC KK E R + V S + +D + P+VD VLTT
Sbjct: 262 YYAEKKNVDPKKIFSVAIMPCTAKKFECQRPEMV----SASKELKDSKV-TPDVDVVLTT 316
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ +I+ +NF AL + D+++ + G ++ G++GG E R A + G+
Sbjct: 317 RELARMIKRAGINFAALPDDQYDQLMGSGTGAGAIF---GTTGGVMEAAARSAYYLITGQ 373
Query: 259 VIEGHL-EFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVE 316
L + +R +E A+ + G +K A+ G N + ++ +++ + F+E
Sbjct: 374 QPPSALWDLTPVRGMQGVKEAAVNIPGVGSVKVAVISGLTNARLVMDQIRSGNAPWVFIE 433
Query: 317 VMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRSLYDEW 372
VMACP GC GGGQ P+ P + ++ L N L + NP ++ +Y ++
Sbjct: 434 VMACPGGCEYGGGQ--PRASSPPSDDVRNRRAASLYKIDANAKLRNSHDNPQIKQVYADF 491
Query: 373 LEQPGSEKAKKHVHTEY 389
L P S+KA++ +HT Y
Sbjct: 492 LTAPMSKKAEELLHTNY 508
>gi|126701030|ref|YP_001089927.1| iron-only hydrogenase, catalytic subunit HymC-like [Clostridium
difficile 630]
gi|255102610|ref|ZP_05331587.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile QCD-63q42]
gi|255308436|ref|ZP_05352607.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
difficile ATCC 43255]
gi|423082851|ref|ZP_17071434.1| putative ferredoxin hydrogenase [Clostridium difficile
002-P50-2011]
gi|423086301|ref|ZP_17074710.1| putative ferredoxin hydrogenase [Clostridium difficile
050-P50-2011]
gi|423089917|ref|ZP_17078263.1| putative ferredoxin hydrogenase [Clostridium difficile 70-100-2010]
gi|115252467|emb|CAJ70310.1| putative iron-only hydrogenase, catalytic subunit HymC-like
[Clostridium difficile 630]
gi|357547170|gb|EHJ29064.1| putative ferredoxin hydrogenase [Clostridium difficile
002-P50-2011]
gi|357547288|gb|EHJ29178.1| putative ferredoxin hydrogenase [Clostridium difficile
050-P50-2011]
gi|357557447|gb|EHJ38990.1| putative ferredoxin hydrogenase [Clostridium difficile 70-100-2010]
Length = 593
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 196/379 (51%), Gaps = 35/379 (9%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K +++ ++P R ++ E FG+ P + K+ LK+LG + +FDT+ D T++E
Sbjct: 225 KEKTIVVQVAPAVRVAIGEEFGLEPGSISTGKMVAALKALGFEHVFDTNFGADFTIMEEA 284
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
EFI R ++ + +LP+L+S CP W+ + E L SS KSPQ G+
Sbjct: 285 TEFIERIQKGE---------NLPILTSCCPAWVNFLEHNYPDK-LNLASSCKSPQGMFGS 334
Query: 135 TIKHHICQK-LGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
K++ K LG P+E+Y V+VMPC KK EA+RE+ + G I +VD
Sbjct: 335 IAKNYYAPKILGINPEELYVVSVMPCVAKKYEASREEL-----------SESG--ILDVD 381
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+TT E+ +I+ A++ L++ D L ++G +SGG E R + +
Sbjct: 382 LSITTRELAKMIKEAAIDLPNLQDQDFDNPLGKSTGAASIFG---ASGGVLEAALRTSYE 438
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ K ++ ++ F +R RE +++V+G T+ + +N + I+ KV+ +C Y
Sbjct: 439 KITNKTLD-NVNFTNVRGLKGIREASIDVDGTTV-NVCIVNTLKNARKIMDKVRSGECKY 496
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYD 370
+EVMACP GC+ G GQ P + + + + +Y N + +NP ++++Y
Sbjct: 497 HIIEVMACPGGCVGGAGQ--PYHHGNTEIVDRRANALYEIDRNKAIRKSHENPDLQAIYK 554
Query: 371 EWLEQPGSEKAKKHVHTEY 389
++ +P S+ A K++HT Y
Sbjct: 555 DFFGEPNSDVAHKYLHTHY 573
>gi|374997362|ref|YP_004972861.1| hydrogenase, Fe-only [Desulfosporosinus orientis DSM 765]
gi|357215728|gb|AET70346.1| hydrogenase, Fe-only [Desulfosporosinus orientis DSM 765]
Length = 526
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/395 (28%), Positives = 196/395 (49%), Gaps = 26/395 (6%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIF 60
E+ +++ L I + V++ +P +R L E FG+ V K L+ LG IF
Sbjct: 132 ERDDINKVLKAIADPNITVVVQTAPATRIGLGEEFGMPVGTNVQGKQVAALRKLGFDVIF 191
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + DLT++E E + R K + +P +S CPGW+ + E ++P
Sbjct: 192 DTNFTADLTIMEEGTELVKRIKGELDK-------PIPQFTSCCPGWVKFVE-YFYPDLIP 243
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+SS KSPQQ G +K + + P +I+ V +MPC KK E+ R ++ + +
Sbjct: 244 NLSSAKSPQQMEGTLMKTYYAETKNVDPKKIFSVAIMPCTAKKFESQRP----EMATAGK 299
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
+D + P+VD+VLTT E+ +I+ ++F +L + D+++ + G ++G ++
Sbjct: 300 ELKDSKV-TPDVDAVLTTRELARMIKRAGIDFNSLPDDQYDQLMGSGTGAGAIFG---TT 355
Query: 241 GGYAETVFRHAAKTLFGKVIEGHL-EFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNL 298
GG E R A + G+ L +R +E A+ + G +K A+ G N
Sbjct: 356 GGVMEAAVRSAYYLITGQQPPSALWGLTPVRGMQGVKEAAVNIPGVGDIKVAVISGLANA 415
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENV 354
+ ++ ++K + F+EVMACP GC GGGQ P+ P + ++ L N
Sbjct: 416 RKVMDQIKEGNAPWAFIEVMACPGGCEYGGGQ--PRASSPPSDEVRNRRAASLYTIDANA 473
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L + NP ++ +Y ++L P SEKA++ +HT Y
Sbjct: 474 KLRNSHDNPQIKQVYADFLTSPMSEKAEELLHTTY 508
>gi|145229679|ref|XP_001389148.1| cytosolic Fe-S cluster assembly factor nar1 [Aspergillus niger CBS
513.88]
gi|259511266|sp|A2Q9A9.1|NAR1_ASPNC RecName: Full=Cytosolic Fe-S cluster assembly factor nar1; AltName:
Full=Nuclear architecture-related protein 1
gi|134055257|emb|CAK43843.1| unnamed protein product [Aspergillus niger]
Length = 597
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 125/376 (33%), Positives = 181/376 (48%), Gaps = 60/376 (15%)
Query: 9 EFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFL-----------KSLGVK 57
E + ++G+ + S+SPQ RASLA +GI+ + + FL G
Sbjct: 107 ELGTASDEGRVFVASVSPQVRASLAATYGITEKEATYMIHQFLSGPHGLRAGGKNGSGFT 166
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL----PMLSSACPGWICYAEKQ 113
+ DT+ R+ L+ +E S +S ++ P+LSSACPGWICYAEK
Sbjct: 167 WVADTNVLREAVLVLTADEVGETLTTSPDSPSTNGATNTLPKRPILSSACPGWICYAEKT 226
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
++LP++S +KSPQ G K + + LG I+H+ VMPC+DKKLEA+RE+
Sbjct: 227 -HPFVLPHLSRLKSPQALAGTFFKTVLSKSLGIPASRIWHLAVMPCFDKKLEASREELT- 284
Query: 174 QLDSQEETYRDEG-LEIPEVDSVLTTGEVLDL-----IQLKAVNFEALEES---PLDKML 224
D+ + +DE + +VD V+TT E+L L I L + ++L +S P M
Sbjct: 285 --DASWLSAKDEDHTAVRDVDCVITTREMLSLASSRGISLPNLPLKSLPQSYIPPFPDMT 342
Query: 225 TN----VDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL- 279
N AG+SGGY H +T + + + RN+D E L
Sbjct: 343 LNDFLFSKSSPGQSAAAGTSGGY----LHHVLQTFQARNPGSEIVTQRGRNADVVEYTLM 398
Query: 280 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-----------------------DYQFVE 316
E +LK A YGF+N+QN+VRK+K + DY +VE
Sbjct: 399 SSEHTPILKAARYYGFRNIQNLVRKLKPARASRLPGGNRRLPVGRGAASGSSGTDYAYVE 458
Query: 317 VMACPSGCLNGGGQIK 332
VMACP GC NGGGQI+
Sbjct: 459 VMACPGGCTNGGGQIR 474
>gi|358387153|gb|EHK24748.1| hypothetical protein TRIVIDRAFT_208599 [Trichoderma virens Gv29-8]
Length = 515
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 180/366 (49%), Gaps = 68/366 (18%)
Query: 18 KAVIISLSPQSRASLAEHFG--ISPLQVFKKLTTFLK-----------SLGVKSIFDTSC 64
K + S+S Q+RA+LA G +S Q L L+ + + + D +
Sbjct: 117 KLFVASVSSQTRANLAAACGRDVSESQAGYMLENLLRGPDGLAKGGKWNTSFEWVVDINV 176
Query: 65 SRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
+RD TL + E ++ S S P+L+S+CPGW+CYAEK Y+LP++S
Sbjct: 177 ARDATLALSAAEVLSSPTPGV------SRPSQPILASSCPGWVCYAEKTH-PYVLPHLSK 229
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
VKSPQ +G +K + +KLG P I+HV +MPC+DKKLEA+RE+ +E +
Sbjct: 230 VKSPQALMGTILKTSLSRKLGIPPSRIWHVAIMPCFDKKLEASREELT------DEVWAR 283
Query: 185 EGLE---IPEVDSVLTTGEVLDLIQLKAVNFEALEES----PLDKMLTNVDDEGHLYG-- 235
GL I +VD V+T+ EVL L + + ++F +S P + + L+
Sbjct: 284 SGLPGKGIRDVDCVITSKEVLMLAESRGLDFFTFSKSASSLPPSIPFPDEKIQAFLFPSK 343
Query: 236 -------VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLK 288
VAGSSGG + H +T + ++ RN D E + V G+ + K
Sbjct: 344 GSRNPSRVAGSSGG----LLHHILQTRAAQTPGSEIQIVRGRNVDVIEYFVTVNGEPIFK 399
Query: 289 FALCYGFQNLQNIVRKVKMRK----------------------CDYQFVEVMACPSGCLN 326
A YGF+N+QN+VR++K + DY +VEVMACP GC N
Sbjct: 400 AARYYGFRNIQNLVRRLKPARPSRMPGGKPFGSARRPAGKAASLDYGYVEVMACPGGCTN 459
Query: 327 GGGQIK 332
GGGQIK
Sbjct: 460 GGGQIK 465
>gi|310658216|ref|YP_003935937.1| putative catalytic subunit of iron-only hydrogenase ([Fe]
hydrogenase) [[Clostridium] sticklandii]
gi|308824994|emb|CBH21032.1| putative catalytic subunit of iron-only hydrogenase ([Fe]
hydrogenase) [[Clostridium] sticklandii]
Length = 577
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 204/393 (51%), Gaps = 34/393 (8%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSI 59
+ E ++ + IN K V++ +P R +L E FG+ P V K+ L++LG +
Sbjct: 209 LTEVNNVSKVWDAINSKKYVVVQTAPAVRVALGEEFGMEPGTVVTGKMAAALRTLGFDKV 268
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
FDT + DLT++E +EF+ R + LP+L+S CPGW+ + E Q S +L
Sbjct: 269 FDTDFAADLTIMEEASEFVHRLEHG---------GKLPILTSCCPGWVKFFEHQF-SDML 318
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
SS KSP + GA K ++ +KL +P+++ V+VMPC KK E+AR +
Sbjct: 319 DIPSSCKSPHEMFGAVAKTYLAEKLDVKPEDMIVVSVMPCVAKKYESARPELGHG----- 373
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS 239
+VD V+TT E+ +I+ +NF LE+ D L ++G +
Sbjct: 374 --------GTKDVDIVITTRELAQMIKEAGINFNELEDQDFDNPLGESTGASVIFG---T 422
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNL 298
+GG E R A + L + +E ++EF+ +R D +E + + G+ + K A+ +G N
Sbjct: 423 TGGVIEAALRTAYEWLTKETLE-NVEFEALRGLDGTKEATVNINGQDI-KIAVTHGLGNA 480
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV--ML 356
+ ++ K++ + +Y +E+MACP GC+ GGGQ P L + +E IY E+ +
Sbjct: 481 RALLEKIRAGEAEYHAIEIMACPGGCIGGGGQ--PYHHGDLSILSRRIEGIYSEDRAKTI 538
Query: 357 ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+NP+++ LY E+L +P KA + +HT Y
Sbjct: 539 RKSHENPMIKQLYAEYLGEPYGHKAHELLHTTY 571
>gi|401886802|gb|EJT50820.1| hypothetical protein A1Q1_08033 [Trichosporon asahii var. asahii
CBS 2479]
Length = 614
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 117/300 (39%), Positives = 170/300 (56%), Gaps = 42/300 (14%)
Query: 21 IISLSPQSRASLAEHFG--ISPLQVFKKLTTFLKS--LGVKSIFDTSCSRDLTLIEACNE 76
++S++PQ+ ASL+ +G I L + +++ +FL S G ++ DT+ +R L L ++ +E
Sbjct: 109 VLSIAPQTLASLSAAYGGSIPLLTLLRRIRSFLSSEERGGWTVLDTTFARHLALRQSVSE 168
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F +R ++S+ +LPML+SACPGW+CYAEK G +LP +SS +SPQ GA +
Sbjct: 169 FRSR---------QQSSKNLPMLASACPGWVCYAEKAQGD-LLPLLSSTRSPQAMQGAIV 218
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K H+ +K G + +E+YHVT MPCYDKKLEA+R DF D+ + E D VL
Sbjct: 219 KRHLAEKWGKKANEVYHVTAMPCYDKKLEASRSDFY-----------DDVAKTKETDCVL 267
Query: 197 TTGEVLDLIQLKAVNFEAL-----EESPLDKMLTNVD--DEGH---LYGVAGSSGGYAET 246
TTGE LDL+ L + F+ E+ P+ + D G L SSG Y
Sbjct: 268 TTGE-LDLL-LSELGFDPSAPVPGEDDPVPPASGDYSRPDAGFPELLTHPGSSSGSYLMA 325
Query: 247 VFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCYGFQNLQNIVRKV 305
+ A+ + + L + +RNS D E LE G+ L K A CYGF+NLQN+VRKV
Sbjct: 326 LLVSLAQ----EHPDATLHVRRLRNSPDNEEYFLESGGQVLFKGARCYGFRNLQNLVRKV 381
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/26 (76%), Positives = 22/26 (84%), Gaps = 2/26 (7%)
Query: 308 RKCDYQFVEVMACPSGCLNGGGQIKP 333
RK D FVEVMACP GC+NGGGQ+KP
Sbjct: 444 RKLD--FVEVMACPGGCVNGGGQMKP 467
>gi|373487460|ref|ZP_09578128.1| hydrogenase, Fe-only [Holophaga foetida DSM 6591]
gi|372009542|gb|EHP10162.1| hydrogenase, Fe-only [Holophaga foetida DSM 6591]
Length = 1061
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 120/391 (30%), Positives = 194/391 (49%), Gaps = 32/391 (8%)
Query: 3 EKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDT 62
EK+S+ F + N+ + ++P R+ ++ FGI Q ++ LK LG +FD
Sbjct: 692 EKESV--FRAINNQNLTTVAFVAPAVRSVISAEFGIPFDQASNFMSGLLKKLGFGKVFDF 749
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
S + DLT++E EF+ R S LP +S CPGW+ + E++ I P++
Sbjct: 750 SFAADLTIMEETTEFLDRVS---------SGGVLPQFTSCCPGWVNFVERRYPDLI-PHL 799
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
SS KSPQ +GAT+K+H ++ V+++PC KK EAAR +F +
Sbjct: 800 SSCKSPQMMMGATVKNHFASTSRADRRNLFVVSIVPCIAKKHEAARPEFA------PDGI 853
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 242
RD VD+VLT+ E+L+++ LK ++ + P D V G L+ G+SGG
Sbjct: 854 RD-------VDAVLTSTEILEMLYLKRIDPSTIPMVPFDPPYQQVSGAGVLF---GASGG 903
Query: 243 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNI 301
AE R A + L G+ L+F+ IR + +E +E + + ++ A+ G N +
Sbjct: 904 VAEAALRLAVEKLTGQARCTQLDFEEIRGFEGLKEATIETQ-DSRVRVAVVSGLHNAARL 962
Query: 302 VRKVKM-RKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
++ ++ Y +EVMACP GC+ G G P+ + + + L I +
Sbjct: 963 AEEIAQGQETGYDLIEVMACPGGCICGAGHPVPEKVGTLNDRQQVLVDIDKTSSHRKSQ- 1021
Query: 361 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
+NP + LYDE+ +P S A K +HT Y P
Sbjct: 1022 ENPDIHRLYDEFFGEPNSPLAHKLLHTHYSP 1052
>gi|340521976|gb|EGR52209.1| predicted protein [Trichoderma reesei QM6a]
Length = 577
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 127/375 (33%), Positives = 182/375 (48%), Gaps = 69/375 (18%)
Query: 9 EFLSNINKGKAVIISLSPQSRASLAEHFG--ISPLQVFKKLTTFLKSL-----------G 55
E L N + K + S+S Q+RA+LA G +S Q L L+
Sbjct: 115 EGLDN-DDAKLFVASVSAQTRANLAAACGRGVSESQAGYMLENLLRGPEGLAKAGKWNNA 173
Query: 56 VKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLG 115
+ + D + +RD TL E ++ + S P+L+S+CPGW+CYAEK
Sbjct: 174 FEWVVDINVARDATLALGAAEVLSSPTPGV------AKPSQPILASSCPGWVCYAEKTH- 226
Query: 116 SYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL 175
Y+LP++S VKSPQ +G +K + +KLG P I+HV VMPC+DKKLEA+RE+
Sbjct: 227 PYVLPHLSKVKSPQALMGTLLKTTLSKKLGVPPSRIWHVAVMPCFDKKLEASREELT--- 283
Query: 176 DSQEETYRDEGLE---IPEVDSVLTTGEVLDLIQLKAVNFEALEES----PLDKMLTNVD 228
+E + GL I +VD V+T+ EVL L + + ++F +S P +
Sbjct: 284 ---DEVWARSGLPGKGIRDVDCVITSKEVLMLAESRGLDFFNFSKSASSVPPSIPFPDEK 340
Query: 229 DEGHLYG---------VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL 279
G L+ VAGSSGG + H +T + ++ RN D E +
Sbjct: 341 MHGFLFPNKGSRNPPRVAGSSGG----LLHHILQTKAAQTPGSEIQVVRGRNVDVVEYFV 396
Query: 280 EVEGKTLLKFALCYGFQNLQNIVRKVKMRKC----------------------DYQFVEV 317
V G+ + K A YGF+N+QN+VR++K + DY FVEV
Sbjct: 397 TVNGEPVFKAARYYGFRNIQNLVRRLKPARPSRMPGGKPFGSARRPAGKAPSHDYSFVEV 456
Query: 318 MACPSGCLNGGGQIK 332
MACP GC NGGGQIK
Sbjct: 457 MACPGGCTNGGGQIK 471
>gi|335427597|ref|ZP_08554526.1| hydrogenase, Fe-only [Haloplasma contractile SSD-17B]
gi|334894591|gb|EGM32777.1| hydrogenase, Fe-only [Haloplasma contractile SSD-17B]
Length = 584
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 122/396 (30%), Positives = 200/396 (50%), Gaps = 38/396 (9%)
Query: 3 EKQSLDEFLSNIN-KGKAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIF 60
EK +D IN + K V+ +P RA+L E FG+ +V K+ L+ LG +F
Sbjct: 208 EKPEIDRVWDAINDEKKYVVFQTAPAVRAALGEEFGMEIGNRVTGKMVAALRRLGGNKVF 267
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + DLT++E NE + R K +LP+++S PGW+ E +I P
Sbjct: 268 DTNFAADLTIMEEANELLDRIKNG---------GTLPLITSCSPGWVRILENYYPEFI-P 317
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+S+ KSP Q +GA K + +K+G P +Y V+VMPC KK E RE+
Sbjct: 318 NLSTCKSPHQMLGAVTKSYYAEKIGVNPKNMYVVSVMPCIAKKFEKDREEM--------- 368
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
E I ++D+V+TT E+ +I+ ++F L D L G ++ G++
Sbjct: 369 ----EVNGIRDIDAVITTRELAKMIKEAGIDFNKLPNEEYDTALGIYSGAGVIF---GAT 421
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQ 299
GG E R AA L GK +E E+ +R + +E +L + G A+ +G +
Sbjct: 422 GGVMEAALRTAADVLEGKDLE-TFEYTGVRGVENIKEASLTLGGNE-YNIAVVHGGNAAK 479
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ--IKPKPGQSPKELIKTL--ETIYLENVM 355
++ VK + +Y F+E+M C GC+NGGGQ + K S + ++TL + +Y E+ +
Sbjct: 480 QLLEMVKNGEKNYHFIEIMGCTGGCVNGGGQPHVHSKIKNSGID-VRTLRAKALYEEDQL 538
Query: 356 --LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ +N ++ LY ++L +P S K+ + +HT Y
Sbjct: 539 CTVRKSHQNKAIQELYRDFLGEPNSHKSHELLHTHY 574
>gi|302833848|ref|XP_002948487.1| iron hydrogenase [Volvox carteri f. nagariensis]
gi|300266174|gb|EFJ50362.1| iron hydrogenase [Volvox carteri f. nagariensis]
Length = 419
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 127/436 (29%), Positives = 207/436 (47%), Gaps = 74/436 (16%)
Query: 7 LDEFLSNINKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCS 65
+DE ++ K +I ++P R ++AE FG++P +L L+ LG +FDT
Sbjct: 1 MDELDKPRDQRKIMICQVAPAVRVAIAECFGLAPGATTPGQLAESLRRLGFDLVFDTLYG 60
Query: 66 RDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY--ILPYIS 123
DLT++E E I R Q+Q S LPM +S CPGWI EK SY ++PY+S
Sbjct: 61 ADLTIMEEGTELIHRL-QAQLEAHPHSEEPLPMFTSCCPGWIALLEK---SYPELIPYVS 116
Query: 124 SVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYR 183
S KSPQ +GA +K ++ +K G P +I V++MPC K+ EA R+ F
Sbjct: 117 SCKSPQMMLGAMVKTYLAEKKGISPSDISMVSIMPCVRKQGEADRDWFC----------- 165
Query: 184 DEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGY 243
G + +VD V+TT E+ ++++ + +N L E D+ L G ++G ++GG
Sbjct: 166 SGGAGVRDVDHVITTAELGNILKERNINLPELPEGYWDQPLGTGSGAGVIFG---TTGGV 222
Query: 244 AETVFRHAAKTLFGKVIEGHLEFKTIRNSD----------------FREV---------- 277
E R A + + + + L +R D F E+
Sbjct: 223 MEAALRTAYELVTQQPLP-RLNLSEVRGMDGIKETEIKMVPPPGSKFAELVAARAAAKAM 281
Query: 278 --------ALEVEGKT-----------LLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVM 318
A++ +G + L+ A+ G N + ++ K++ +C Y FVE+M
Sbjct: 282 DEAAASAGAIKWDGGSNFTADDGANGITLRVAVANGLGNAKKLLTKMQTGECKYDFVEIM 341
Query: 319 ACPSGCLNGGGQIKPKPGQSPKELI-KTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQ 375
ACPSGC+ GGGQ P + K++ K + +Y E + +NP +++ Y ++L +
Sbjct: 342 ACPSGCVGGGGQ----PRSTDKQITAKRQQALYNLDERSTIRRSHENPAIQTAYKDFLGE 397
Query: 376 PGSEKAKKHVHTEYHP 391
P +A +HT Y P
Sbjct: 398 PNGPRAHDLLHTHYVP 413
>gi|435854933|ref|YP_007316252.1| hydrogenase, Fe-only [Halobacteroides halobius DSM 5150]
gi|433671344|gb|AGB42159.1| hydrogenase, Fe-only [Halobacteroides halobius DSM 5150]
Length = 575
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 196/382 (51%), Gaps = 38/382 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
++ + V++ +P +A++ E FG+ P V KL T L LG +F T + DLT++E
Sbjct: 221 DENQHVVVQTAPSIQATMGEPFGMEPGTVVTGKLATALNQLGFDRVFSTDFAADLTIMEE 280
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+E +AR +D+ SN+ P ++S CPGW+ + E +L +S+ KSP
Sbjct: 281 GSELLARL------EDKESNT--PQITSCCPGWVKFCEHNY-PELLDNLSTAKSPMSMFS 331
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
K + + ++IY V++MPC KK E R + +D G + + D
Sbjct: 332 PLAKTYYAETKDLEAEDIYTVSIMPCTAKKFEKERGEL-----------QDSGTQ--DTD 378
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+VLTT E+ +I+ + F LE++ D+M+ G ++G ++GG E R +
Sbjct: 379 AVLTTRELARMIKEAGIKFAELEDTEYDRMMGEATGAGTIFG---TTGGVMEAALRTVYE 435
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
L + + L+ +R +E A+E+ G +K A+ +G N +++ +VK + +Y
Sbjct: 436 KLTDEELP-RLDLDEVRGLKGVKETAVEI-GNDTVKVAVAHGLGNAADLLDQVKAGEANY 493
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK----NPLVRSL 368
F+EVMACP+GC+ GGGQ P + KE IK L N+ +D + NP ++ L
Sbjct: 494 DFIEVMACPAGCVGGGGQPYP----ASKE-IKAKRGQGLYNIDQSDKIRKSHENPEIKKL 548
Query: 369 YDEWLEQPGSEKAKKHVHTEYH 390
Y+++L P SEKA +HT Y
Sbjct: 549 YEDFLGAPLSEKAHHLLHTNYQ 570
>gi|67594873|ref|XP_665926.1| Fe-hydrogenase [Cryptosporidium hominis TU502]
gi|54656799|gb|EAL35695.1| Fe-hydrogenase [Cryptosporidium hominis]
Length = 560
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 126/412 (30%), Positives = 196/412 (47%), Gaps = 92/412 (22%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
+LE Q++ EF++ + + + ++S+S QS +S A H + + +KL+ K +G + +
Sbjct: 80 LLEDQNVSEFMNILKQKRLTVVSISNQSCSSFACHLNCDLITIQRKLSGLFKHIGARFVM 139
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
+++ S ++L+E EFI+RYK + S LPM+ S CPGWICY+EK L S +LP
Sbjct: 140 NSTISEYISLLETKYEFISRYK---------AKSDLPMIISHCPGWICYSEKSLNSSVLP 190
Query: 121 YISSVKSPQQTIGATIKH---HICQKLGF---------------------------RPDE 150
+S V+S QQ G IK I +L F +
Sbjct: 191 LLSKVRSAQQLQGILIKTLTLEIYNQLLFLYKFRLSNSYGTNMNIKTTFTQNDDFVEQSD 250
Query: 151 IYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAV 210
I+HV +MPC+DKKLE+ R S D+ PEVD VL T EV ++I+L
Sbjct: 251 IFHVAIMPCHDKKLESTRS-------SLSLKSSDKNSSCPEVDIVLATSEVGEIIKLAGF 303
Query: 211 N-FEALEESPLDKMLTNVD-------------DEGHLYG-------------VAGSSGGY 243
N + E+PLD + N + E ++ +SGG+
Sbjct: 304 NSLLDVPEAPLDNLWLNQNFQITKKHNLSLLITENYVSNQILNQFPWLIPSYFNSNSGGF 363
Query: 244 AETVFRHAAKTLFGKVIEG--HLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNI 301
E + R A K L G I+ L F ++N D E A ++ L + L YGF+ +Q+I
Sbjct: 364 CEYIIRSAIKELAGDNIDNKVQLPFNKLKN-DILE-AKYIKNNVELNYCLVYGFRAIQSI 421
Query: 302 VRKVKMRK---------------CDYQFVEVMACPSGCLNGGGQIKPKPGQS 338
RK+ ++K +Y +E MACP+GC++GGGQI + Q+
Sbjct: 422 SRKLNLQKNASQHTQYKQNVVNHVNYHLIEAMACPTGCVSGGGQILSQNDQN 473
>gi|217076874|ref|YP_002334590.1| hydrogenase-1 [Thermosipho africanus TCF52B]
gi|217036727|gb|ACJ75249.1| hydrogenase-1 [Thermosipho africanus TCF52B]
Length = 658
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 194/396 (48%), Gaps = 53/396 (13%)
Query: 4 KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDT 62
+ L + +GK +I ++P RAS+ E G+ + V ++ FLKS+G K +FD
Sbjct: 204 RNDLQNVYKAMEEGKYIIGMMAPAVRASIQEELGMEDDVVVAGRIVNFLKSIGFKKVFDV 263
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
+ + DL E +EF R ++ ++ LP +S CPGW+ +AE Y L +
Sbjct: 264 AFAADLVAYEEAHEFKERLEKGEK---------LPQFTSCCPGWVKFAEHNYPEY-LNNL 313
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
S+VKSPQQ +G+ IK +++G P++IY V++MPC KK EA RE+ V
Sbjct: 314 STVKSPQQALGSIIKKFYAKEIGVNPEDIYLVSIMPCTAKKFEAEREELV---------- 363
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSG- 241
EVD+V+TT E+ LI+ N + + P D+ YG++ SG
Sbjct: 364 -------GEVDAVITTRELSQLIRSSGFNLKNVPPVPFDRP----------YGLSSQSGL 406
Query: 242 --GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKT-----LLKFALCYG 294
G VF KV+E +EF I+ + E + V T ++ + +G
Sbjct: 407 SFGKTGGVFGSVL-----KVLESEIEFDDIKTEEI-EKGIRVTKATTKDGKVISGVVVFG 460
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV 354
N + ++ +K K VEVMAC GC+ GGGQ P + + K L + +V
Sbjct: 461 LGNTRKVIDSIKNGKLKVDIVEVMACDYGCIGGGGQPYPNDARVRTKRAKILNEVVGIDV 520
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
+++ P +N + SLY+ +LE+P S + + +HT Y
Sbjct: 521 LIS-PNENYHMLSLYERYLEKPLSHVSHEVLHTTYR 555
>gi|359414660|ref|ZP_09207125.1| hydrogenase, Fe-only [Clostridium sp. DL-VIII]
gi|357173544|gb|EHJ01719.1| hydrogenase, Fe-only [Clostridium sp. DL-VIII]
Length = 461
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 120/380 (31%), Positives = 192/380 (50%), Gaps = 45/380 (11%)
Query: 21 IISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
I+ +P R SL E FG+ + K+ L+ LG ++DT+ DLT++E +E I
Sbjct: 108 IVQCAPAIRVSLGEEFGLKAGSLTAGKMAAALRRLGFNRVYDTNFGADLTIMEEGSELIK 167
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY--ILPYISSVKSPQQTIGATIK 137
R + LPM +S CP W+ + E+ SY +L ++SS KSPQQ G K
Sbjct: 168 RVTKG---------GKLPMFTSCCPAWVKFMEQ---SYPELLNHLSSCKSPQQMAGTIFK 215
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+ + P +IY+V +MPC K+ E RE+ Q+ ++D VD V+T
Sbjct: 216 TYGAKIDKVSPKKIYNVAIMPCTCKQFECDREEM------QDSGFKD-------VDIVIT 262
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
T E LI+ K ++F+ L++ D L + G+++GV +GG E R + L
Sbjct: 263 TREFAQLIRDKGIDFKNLKDEEFDLPLGSYTGAGNIFGV---TGGVMEAALRSGYEMLTK 319
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
K I +LE +R S+ VA K LK A+ G +N+ I+ +K C++ F+EV
Sbjct: 320 KSIP-NLELNFVRGSEGIRVAEVKLPKITLKVAVVSGLKNVVKILEDIKEGNCEFDFIEV 378
Query: 318 MACPSGCLNGGGQ------IKPKPGQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLY 369
M CP GC++GGGQ I + G L+ + IY + + + +NP ++ LY
Sbjct: 379 MTCPEGCVSGGGQPKFILDIDRRNG-----LVSRKKGIYKHDSELEIRKSHENPFIKKLY 433
Query: 370 DEWLEQPGSEKAKKHVHTEY 389
+E+L +P EK+ +HT++
Sbjct: 434 EEFLIEPLGEKSHHLLHTKF 453
>gi|332296990|ref|YP_004438912.1| hydrogenase, Fe-only [Treponema brennaborense DSM 12168]
gi|332180093|gb|AEE15781.1| hydrogenase, Fe-only [Treponema brennaborense DSM 12168]
Length = 580
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 197/378 (52%), Gaps = 41/378 (10%)
Query: 22 ISLSPQSRASLAEHFGISPLQVF--KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
+ ++P RA+L E F + P+ +K+ T L+ +G K +FDT+ + DLT++E E +
Sbjct: 226 VQIAPSVRAALGEEFDL-PVGTITTQKIYTALRMMGFKYVFDTNFAADLTIMEEGTELVE 284
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
R + +LPM +S CPGW+ YAEK +LP++S+ KSPQQ GA K +
Sbjct: 285 RLTK---------GGALPMFTSCCPGWVDYAEKHYHD-MLPHLSTAKSPQQMQGAVTKTY 334
Query: 140 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
++ G +P++I+ V++MPC K EA R D D + D VD VLTT
Sbjct: 335 WAEQAGLKPEQIFSVSIMPCTAKAYEARRND-----DMKSSGASD-------VDLVLTTR 382
Query: 200 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV 259
E+ LI+ ++F LEES D L G ++ G++GG E R A L K
Sbjct: 383 ELAMLIRQAGIDFVNLEESAADNPLGPYSGAGTIF---GATGGVMEAAVR-TAYALVTKK 438
Query: 260 IEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVK-----MRKCDYQ 313
G++ +R + + ++++G T ++ A+ + N+ +V++V+ ++ Y
Sbjct: 439 ELGNINLTPVRGLEAVKASEIDLDG-TKIRVAVVHQMGNVDKVVQQVREALAAGKEPPYH 497
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDE 371
F+EVMAC GC+ GGGQ G + + K +Y ++ + KNP + LYD
Sbjct: 498 FIEVMACRGGCVAGGGQ---PYGATDEVRSKRAAALYRDDDDCAVRVSHKNPEIVKLYDR 554
Query: 372 WLEQPGSEKAKKHVHTEY 389
+L +P SEK+ +HT+Y
Sbjct: 555 FLGKPCSEKSHHLLHTKY 572
>gi|374581149|ref|ZP_09654243.1| hydrogenase, Fe-only [Desulfosporosinus youngiae DSM 17734]
gi|374417231|gb|EHQ89666.1| hydrogenase, Fe-only [Desulfosporosinus youngiae DSM 17734]
Length = 527
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 115/395 (29%), Positives = 193/395 (48%), Gaps = 26/395 (6%)
Query: 3 EKQSLDEFLSNINKGK-AVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIF 60
E+ +D+ L I+ V++ +P +R L E FG+ V K L+ LG IF
Sbjct: 133 ERDDIDKVLKAISDPNITVVVQTAPATRIGLGEEFGMPVGTNVQGKQVAALRKLGFDVIF 192
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + DLT++E E + R K + +P L+S CPGW+ + E ++P
Sbjct: 193 DTNFTADLTIMEEGTELVKRVKGELKM-------PIPQLTSCCPGWVKFVE-YFYPDLIP 244
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+S+ KSPQQ G +K + + P +I+ V +MPC KK E R + V S +
Sbjct: 245 NLSTAKSPQQMEGTLMKTYYAETNNVDPKKIFSVAIMPCTAKKFECQRPEMV----SARK 300
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
D + P+VD VLTT E+ +I+ ++F +L + D+++ + G ++G ++
Sbjct: 301 DLNDSNVS-PDVDVVLTTKELARMIKRAGIDFTSLPDDQYDQLMGSGTGAGAIFG---TT 356
Query: 241 GGYAETVFRHAAKTLFGKVIEGHL-EFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNL 298
GG E R A + G+ L +R +E A+ + G +K A+ G N
Sbjct: 357 GGVMEAAVRSAYYLITGQQPPSALWALTPVRGMQGVKEAAVNIPGVGDIKVAVISGLANA 416
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV---- 354
+ ++ +++ + F+EVMACP GC GGGQ P+ P + + L +
Sbjct: 417 RMVMDQIRAGNTSWAFIEVMACPGGCEYGGGQ--PRASSPPSDADRNRRAASLYTIDAKA 474
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L + NP ++ +Y ++L P SEKA++ +HT Y
Sbjct: 475 KLRNSHDNPQIKQVYADFLTSPMSEKAEELLHTHY 509
>gi|66361834|ref|XP_627881.1| narf-like protein nuclear prelamin A recognition factor
[Cryptosporidium parvum Iowa II]
gi|23213133|gb|AAN05787.1| putative Fe-hydrogenase [Cryptosporidium parvum]
gi|46227593|gb|EAK88528.1| narf-like protein nuclear prelamin A recognition factor
[Cryptosporidium parvum Iowa II]
Length = 560
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 126/412 (30%), Positives = 196/412 (47%), Gaps = 92/412 (22%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
+LE Q++ EF++ + + + ++S+S QS +S A H + + +KL+ K +G + +
Sbjct: 80 LLEDQNVSEFMNILKQKRLTVVSISNQSCSSFACHLNCDLITIQRKLSGLFKHIGARFVM 139
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
+++ S ++L+E EFI+RYK + S LPM+ S CPGWICY+EK L S +LP
Sbjct: 140 NSTISEYISLLETKYEFISRYK---------AKSDLPMIISHCPGWICYSEKSLNSSVLP 190
Query: 121 YISSVKSPQQTIGATIKH---HICQKLGF---------------------------RPDE 150
+S V+S QQ G IK I +L F +
Sbjct: 191 LLSKVRSAQQLQGILIKTLTLEIYNQLLFLYKFRLSNSYRTNMNVKSTFTQNDNFVEQSD 250
Query: 151 IYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAV 210
I+HV +MPC+DKKLE+ R S D+ PEVD VL T EV ++I+L
Sbjct: 251 IFHVAIMPCHDKKLESTRS-------SLSLKSSDKNSSCPEVDIVLATSEVGEIIKLAGF 303
Query: 211 N-FEALEESPLDKMLTNVD-------------DEGHLYG-------------VAGSSGGY 243
N + E+PLD + N + E ++ +SGG+
Sbjct: 304 NSLLDVPEAPLDNLWLNQNFQITKKHNLSLLITENYVSNQILNQFSWLIPSYFNSNSGGF 363
Query: 244 AETVFRHAAKTLFGKVIEG--HLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNI 301
E + R A K L G I+ L F ++N D E A ++ L + L YGF+ +Q+I
Sbjct: 364 CEYIIRSAIKELAGDHIDNKVQLPFNKLKN-DILE-AKYIKNNVELNYCLAYGFRAIQSI 421
Query: 302 VRKVKMRK---------------CDYQFVEVMACPSGCLNGGGQIKPKPGQS 338
RK+ ++K +Y +E MACP+GC++GGGQI + Q+
Sbjct: 422 SRKLNLQKNASQNTQYKQSVVNHVNYHLIEAMACPTGCVSGGGQILSQNDQN 473
>gi|419759368|ref|ZP_14285669.1| hydrogenase-1 [Thermosipho africanus H17ap60334]
gi|407515581|gb|EKF50319.1| hydrogenase-1 [Thermosipho africanus H17ap60334]
Length = 658
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 119/395 (30%), Positives = 192/395 (48%), Gaps = 51/395 (12%)
Query: 4 KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDT 62
+ L + +GK +I ++P RAS+ E G+ + V ++ FLKS+G K +FD
Sbjct: 204 RNDLQNVYKAMEEGKYIIGMMAPAVRASIQEELGMEDDVVVAGRIVNFLKSIGFKKVFDV 263
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
+ + DL E +EF R ++ ++ LP +S CPGW+ +AE Y L +
Sbjct: 264 AFAADLVAYEEAHEFKERLEKGEK---------LPQFTSCCPGWVKFAEHNYPEY-LNNL 313
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
S+VKSPQQ +G+ IK +++G P++IY V++MPC KK EA RE+ V
Sbjct: 314 STVKSPQQALGSIIKKFYAKEIGVNPEDIYLVSIMPCTAKKFEAEREELV---------- 363
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSG- 241
EVD+V+TT E+ LI+ N + + P D+ YG++ SG
Sbjct: 364 -------GEVDAVITTRELSQLIRSSGFNLKNVPPMPFDRP----------YGLSSQSGL 406
Query: 242 --GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD----FREVALEVEGKTLLKFALCYGF 295
G VF KV+E +EF I+ + R + ++ + +G
Sbjct: 407 SFGKTGGVFGSVL-----KVLESEIEFDDIKTEEIEKGIRLTKATTKDGKVISGVVVFGL 461
Query: 296 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM 355
N + ++ +K K VEVMAC GC+ GGGQ P + + K L + +V+
Sbjct: 462 GNTRKVIDSIKNGKLKVDIVEVMACDYGCIGGGGQPYPNDARVRTKRAKILNEVVGIDVL 521
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
++ P +N + SLY+ +LE+P S + + +HT Y
Sbjct: 522 IS-PNENYHMLSLYERYLEKPLSHVSHEVLHTTYR 555
>gi|339442556|ref|YP_004708561.1| hypothetical protein CXIVA_14930 [Clostridium sp. SY8519]
gi|338901957|dbj|BAK47459.1| hypothetical protein CXIVA_14930 [Clostridium sp. SY8519]
Length = 576
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 123/378 (32%), Positives = 193/378 (51%), Gaps = 35/378 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K ++ ++P R + E FG++P + ++L+ LK LG +FDT S DLT++E +E
Sbjct: 221 KVTVVQIAPSIRTAWGEMFGMTPEEASMERLSATLKFLGFDYVFDTDFSADLTIMEEGSE 280
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ R K + PM +S CPGW+ + + Y+ +S+ KSPQQ GA I
Sbjct: 281 FVQRLKDGKRD--------FPMFTSCCPGWVRFLKAHYPEYV-DNLSTAKSPQQMFGAII 331
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K ++ Q G P +Y V++MPC KK E A ++ P+VD+VL
Sbjct: 332 KSYVAQIKGIDPKNVYSVSLMPCLAKKHECAI------------PVMNDACGDPDVDTVL 379
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
T E++ L++ + VN LEE PLD + G+++G ++GG E R A +
Sbjct: 380 TNRELVRLLRSQHVNPGLLEEEPLDDPMGFGSGAGNIFG---ATGGVMEAALRSAYYLVT 436
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G+ + F+ +R D ++E E+ G TL K A+ G N ++ ++ K Y FV
Sbjct: 437 GENPDPD-AFRAVRGMDGWKEAEFEIAGMTL-KIAVVNGLANADKLLTALRKGKVQYDFV 494
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD---PFKNPLVRSLYDEW 372
EVMACP GC+ GGGQ P KE+ + I + D +NP + +Y E+
Sbjct: 495 EVMACPGGCVGGGGQ----PFYDGKEMAASRAPILYAFDQITDLRFSHENPSITKVYSEY 550
Query: 373 LEQPGSEKAKKHVHTEYH 390
L +P SEK+ +HT++H
Sbjct: 551 LGEPLSEKSHHLLHTDHH 568
>gi|332654613|ref|ZP_08420356.1| [Fe] hydrogenase gamma [Ruminococcaceae bacterium D16]
gi|332516577|gb|EGJ46183.1| [Fe] hydrogenase gamma [Ruminococcaceae bacterium D16]
Length = 696
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 120/378 (31%), Positives = 198/378 (52%), Gaps = 24/378 (6%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++S SP RA+L E FG+ P V K+ L++LGV + DT+ + DLT++E +E
Sbjct: 103 KVVVVSTSPAVRAALGEEFGMEPGAFVEGKMVALLRALGVDYVLDTNFAADLTIVEEASE 162
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
I R + + LP +S CPGW+ + E +LP++S+ KSP G T+
Sbjct: 163 LIRRITEK--------DRPLPQFTSCCPGWVHFTEI-YAPELLPHLSTAKSPIGMQGPTV 213
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +++G P +I HVT+ PC KK E RE+ + + + + +G+ + D V+
Sbjct: 214 KTYFAKQMGLDPRQIVHVTLTPCTAKKFEVRREE----MHAAGDYHGIQGMR--DTDQVI 267
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ + +++ ALE+S D ++ G ++G ++GG E R A L
Sbjct: 268 TTRELARWAKAAGIDWTALEDSAYDSLMGKASGAGVIFG---NTGGVMEAALRTAYAYLT 324
Query: 257 GK-VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
GK E L+ +R D RE + + G L+ A+ YG N + + ++K Y F
Sbjct: 325 GKSAPESLLQLDPVRGYDGVREAQVTI-GDLTLQVAVVYGTANARRFLERMKESGKQYHF 383
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEW 372
VEVMACP GC+ GGGQ K + + + +Y + + L +NP ++++Y+ +
Sbjct: 384 VEVMACPGGCIGGGGQPKNLMKNADETRKSRIAALYQRDGSMTLRSSHENPEIKAVYEAF 443
Query: 373 LEQPGSEKAKKHVHTEYH 390
QP SE A++ +HT Y+
Sbjct: 444 YGQPLSELAEQMLHTTYY 461
>gi|451821180|ref|YP_007457381.1| NADP-reducing hydrogenase subunit HndC [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451787159|gb|AGF58127.1| NADP-reducing hydrogenase subunit HndC [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 562
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 120/385 (31%), Positives = 185/385 (48%), Gaps = 56/385 (14%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N K V++ ++P R L G K+ L+ +G IFDTS DLT+IE
Sbjct: 220 NPKKRVVVQIAPAVRVGLGTQLGEEDGRNAMGKMAAALRRMGFDKIFDTSVGADLTVIEE 279
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
NEF+++ + +N +LP+ +S CP W+ YAEK ++ +SS KSP
Sbjct: 280 TNEFVSKLQ---------NNEALPLFTSCCPAWVNYAEKTY-PELMKNVSSCKSPMGMFA 329
Query: 134 ATIKHHICQKLGFRPD--EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 191
A +K H +R D E+ V +MPC KK EAARE+F +++G +P+
Sbjct: 330 AVLKEH------YREDDRELVSVAIMPCSAKKFEAAREEF-----------KNDG--VPD 370
Query: 192 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFR-- 249
VD V+TT E ++++ + F LE LD+ + G ++GV +GG E V R
Sbjct: 371 VDYVVTTQEFVNMVNESGIAFSELEPEALDRPFQSCSGAGVIFGV---TGGVTEAVIRKV 427
Query: 250 ---HAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVK 306
L EG + ++ + + E+ K A+ G +N NI++KV+
Sbjct: 428 LSEQPVPALRSFAFEGVRGMEGVKETTINALDREI------KIAIVSGLKNADNIIKKVR 481
Query: 307 MRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPL 364
+ Y FVEVMACP GC+NG GQ P +E +K +Y + M ++ NPL
Sbjct: 482 AGEAHYDFVEVMACPGGCINGAGQ----PFAKAEEKVKRGAQLYKVDKMKSISRSDDNPL 537
Query: 365 VRSLYDEWLEQPGSEKAKKHVHTEY 389
+ SLY L+ +K + +H Y
Sbjct: 538 MDSLYSGILK----DKTHELLHVHY 558
>gi|259511472|sp|A8XZU0.2|NARF_CAEBR RecName: Full=Probable cytosolic Fe-S cluster assembly factor oxy-4
Length = 439
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 128/404 (31%), Positives = 199/404 (49%), Gaps = 50/404 (12%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
++E+QS L I K +I++SPQ+ SLA +P + K + +F + GVK +
Sbjct: 85 LVEEQSFGRLLEGIRNSKMAVITISPQTITSLAVKLEKTPEDLAKLIASFFRRHGVKYVL 144
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
D+S +R A E + ++S P+LSSACPG++CYAEK G ++P
Sbjct: 145 DSSFARQFAHSLAYEELLLT-----------PSTSRPLLSSACPGFVCYAEKSHGELLIP 193
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
IS ++SPQ GA +K ++ +K G P +++H VMPC+DKKLE
Sbjct: 194 KISKIRSPQAISGAIVKGYLAKKEGLSPCDVFHAAVMPCFDKKLE--------------- 238
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG-S 239
+R L T E+L+ + + E +EE + T++ G + G G +
Sbjct: 239 -HRGNS---------LGTAELLEELVKEEGVAEDVEEEEENNWTTSL-SRGIIIGEDGGA 287
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQ 299
SGGYA+ + R G V L +N V G+ +L+ A YGF+N+Q
Sbjct: 288 SGGYADRIVRDFVAQNGGIVKTSKLN----KNMFSTTVESTTTGEIVLRVAKVYGFRNVQ 343
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADP 359
N+VRK+K +K +VEVMACP GC NGGGQ++ + ++ + +E +Y A P
Sbjct: 344 NLVRKMKTKKEKTDYVEVMACPGGCANGGGQVRYETMDEREKRLAQVEELY-----EALP 398
Query: 360 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 403
N S+ +EW + K + T+Y PV ++ AQ W
Sbjct: 399 RGNSWEESVREEW--KRLDTNYKNLLFTDYKPVETNV-AQTLKW 439
>gi|359744034|gb|AEV57473.1| [FeFe]-hydrogenase [Clostridium butyricum]
Length = 574
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 122/378 (32%), Positives = 181/378 (47%), Gaps = 34/378 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI++++P R S+ E F + + V KL + L+ LG +FD + D+T++E E
Sbjct: 223 KHVIVAMAPAVRTSMGELFKMGYGVDVTGKLYSSLRQLGFDKVFDINFGADMTIMEEATE 282
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
FI R +N PM +S CP W+ AE +L +SS KSPQQ GA
Sbjct: 283 FIERI---------NNNGPFPMFTSCCPAWVRQAENYY-PELLGNLSSAKSPQQIFGAAS 332
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + G P +Y VT+MPC KK EA R + +EGL +D+VL
Sbjct: 333 KTYYPTVEGLDPKSVYTVTIMPCTAKKYEADRTEM-----------ENEGLR--NIDAVL 379
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ +NF ALE+ D + G ++G +SGG E FR +
Sbjct: 380 TTRELAKMIKDAKINFAALEDEKSDPSMGEYTGAGVIFG---ASGGVMEAAFRSVKDFVE 436
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
K + +E+ +R D +E +E+ GK A+ G NL V +M + Y FV
Sbjct: 437 DKDLS-DIEYTQVRGLDGIKEATVEIGGKNF-NVAVINGSDNLTKFVEGGQMDEKQYHFV 494
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN---VMLADPF-KNPLVRSLYDE 371
EVM+CP GC+NGGGQ ++ + L N + F KN + +Y E
Sbjct: 495 EVMSCPGGCVNGGGQPHVAAKDRDTANVRAVRASVLYNQDKTAVKRKFHKNQALIKMYHE 554
Query: 372 WLEQPGSEKAKKHVHTEY 389
++ PG KA + +H +Y
Sbjct: 555 YMGMPGQHKAHELLHLKY 572
>gi|452987683|gb|EME87438.1| hypothetical protein MYCFIDRAFT_201123 [Pseudocercospora fijiensis
CIRAD86]
Length = 605
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 117/370 (31%), Positives = 185/370 (50%), Gaps = 70/370 (18%)
Query: 17 GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS----------IFDTSCS 65
GK + S+SPQ+RASLA + +S + ++ L LGV+S + DT+
Sbjct: 116 GKIFVASVSPQARASLAATYSVSEREAGYMISQLLSGPLGVRSGGKNGSGFAWVVDTNAM 175
Query: 66 RDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSV 125
R+ +L+ A E Q E + P+++S CPGW+CYAEK ++LP++S +
Sbjct: 176 REASLVAAAEEVEQSLVQLPEGQKK------PVITSVCPGWVCYAEKTH-PHMLPHLSKL 228
Query: 126 KSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDE 185
KSPQ G +K + ++ G +P ++H+ +MPC+DKKLEA+R + L + E
Sbjct: 229 KSPQALTGVLLKSVLAKQFGVKPQNLWHLAIMPCFDKKLEASRAELTSHL-----WHGQE 283
Query: 186 GLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGH--LYGVA------ 237
G + +VD V+T E+L L + + ++F L + P+ + + + L G+
Sbjct: 284 GDAVRDVDCVITARELLMLAESRDISFPGLPKHPVGDLPPFPEPAVNEFLLGLPRGQKRK 343
Query: 238 -------GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEV-EGKTLLKF 289
G+SGGY H KT + + + + RN+D E ++ + +G+ + K
Sbjct: 344 REDMDAIGTSGGY----LWHILKTKQAQHVGSQIRSQRGRNNDVSEYSVVLADGEPVFKA 399
Query: 290 ALCYGFQNLQNIVRKVKMRKC---------------------------DYQFVEVMACPS 322
A YGF+N+QN+VRK+K K DY +VEVMACP
Sbjct: 400 ARYYGFRNIQNLVRKLKPVKASRMPGATGRKFGTSRRPGAASAGGDSNDYAYVEVMACPG 459
Query: 323 GCLNGGGQIK 332
GC NGGGQIK
Sbjct: 460 GCTNGGGQIK 469
>gi|242768782|ref|XP_002341639.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Talaromyces stipitatus ATCC 10500]
gi|218724835|gb|EED24252.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Talaromyces stipitatus ATCC 10500]
Length = 577
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 124/363 (34%), Positives = 178/363 (49%), Gaps = 61/363 (16%)
Query: 21 IISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS----------IFDTSCSRDLT 69
+ S+SPQ RASLA +GIS + + L+ G++S + DT R +
Sbjct: 119 VASVSPQVRASLAATYGISERKAGYMIDQLLRGPQGLRSGGKHGNGFTWVIDTDVLRQMV 178
Query: 70 LIEACNEFIARYKQSQESDDERSNSS--LPMLSSACPGWICYAEKQLGSYILPYISSVKS 127
L A E + SS P+LSSACPGWICYAEK ++LP++S +KS
Sbjct: 179 LTLAAQEVTESLSAPSTCKESGRYSSPKRPILSSACPGWICYAEKT-HPHVLPHLSRLKS 237
Query: 128 PQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGL 187
PQ G +K + + LG P +I+H+ VMPC+DKKLEA+RE+ + ++
Sbjct: 238 PQALAGTFVKSILSRALGIAPSQIWHLAVMPCFDKKLEASREELTEA--AWNKSSNTSQS 295
Query: 188 EIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL-------------DKML---TNVDDEG 231
+ +VD V+T+ E+L L + ++ +L PL D L T+ +
Sbjct: 296 PVRDVDCVITSRELLMLASSRNISLPSLPLKPLALAYAPHFPDSTIDSFLFSGTHTSKQS 355
Query: 232 HLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GKTLLKFA 290
Y G+SGGY + + G IE + RNSD E +L E +T++K A
Sbjct: 356 LAY---GTSGGYLYYILSSHQERHPGSRIEA----QRGRNSDVVEYSLVSESNETIMKAA 408
Query: 291 LCYGFQNLQNIVRKVKMRKC---------------------DYQFVEVMACPSGCLNGGG 329
YGF+N+QN+VRK+K + DY FVEVMACP GC NGGG
Sbjct: 409 RYYGFRNIQNLVRKMKPARASRLPGAKRGTTGSGVNGSSGLDYAFVEVMACPGGCTNGGG 468
Query: 330 QIK 332
QI+
Sbjct: 469 QIR 471
>gi|339501342|ref|YP_004699377.1| hydrogenase, Fe-only [Spirochaeta caldaria DSM 7334]
gi|338835691|gb|AEJ20869.1| hydrogenase, Fe-only [Spirochaeta caldaria DSM 7334]
Length = 581
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 120/384 (31%), Positives = 190/384 (49%), Gaps = 38/384 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVF-KKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
NK ++ ++P R +L E FG+ P + KK+ L+ LG K++FDT+ + DLT++E
Sbjct: 219 NKDIHPVVQIAPAVRVALGEEFGLEPGTIITKKIYAALRRLGFKTVFDTNFAADLTIMEE 278
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
E + R + + +P+++S CP W+ Y EK I P+ S+ KSPQQ +G
Sbjct: 279 GTELVKRLTEGK--------GDIPLITSCCPAWVDYLEKYYPEMI-PHFSTAKSPQQMMG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A IK + QK G P +++ V++MPC KK E R D D + Y+D VD
Sbjct: 330 AMIKAYWAQKAGVDPAKVFSVSIMPCTAKKWEIDRND-----DMKSSGYQD-------VD 377
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+TT E+ +I+ ++ L + D L G ++ G++GG E R A
Sbjct: 378 VSITTRELARMIKQAGIDILNLPDEEADSPLGPYTGAGTIF---GATGGVMEAAVR-TAY 433
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-- 310
L K G + F R +E +++ G T ++ A+ + N+ ++ K+K K
Sbjct: 434 FLVTKKEMGDVNFIPARGLQGVKEAEVDMNG-TKIRIAVAHQMGNIAAVLEKIKEAKAAG 492
Query: 311 ---DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLV 365
Y FVEVMAC GC+ GGGQ G + + K + IY E +NP +
Sbjct: 493 KETPYHFVEVMACRGGCIAGGGQPY---GCTDEVRSKRIAGIYADDEKSTYRCSHQNPFI 549
Query: 366 RSLYDEWLEQPGSEKAKKHVHTEY 389
+ +YDE+L +P KA + +HT Y
Sbjct: 550 KQVYDEFLGEPNDHKAHELLHTHY 573
>gi|358367009|dbj|GAA83629.1| iron-sulfur cluster assembly associated protein Nar1 [Aspergillus
kawachii IFO 4308]
Length = 597
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 127/384 (33%), Positives = 189/384 (49%), Gaps = 63/384 (16%)
Query: 3 EKQSLDEFLSNIN-KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFL---------- 51
E +L + L N +G+ + S+SPQ RASLA +GI+ + + FL
Sbjct: 100 ENGTLAQGLGTDNDEGRVFVASVSPQVRASLAATYGITEKEASYMIQQFLSGPHGLRAGG 159
Query: 52 -KSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL----PMLSSACPGW 106
G + DT+ R+ L+ +E + +S S ++ P+LSSACPGW
Sbjct: 160 KNGSGFTWVVDTNVLREAVLVLTADEVGETLTTNPDSPSTTSATNTLPKRPILSSACPGW 219
Query: 107 ICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEA 166
ICYAEK ++LP++S +KSPQ G K + + LG I+H+ VMPC+DKKLEA
Sbjct: 220 ICYAEKT-HPFVLPHLSRLKSPQALAGTFFKTVLSKSLGIPASRIWHLAVMPCFDKKLEA 278
Query: 167 AREDFVFQLDSQEETYRDEG-LEIPEVDSVLTTGEVLDL-----IQLKAVNFEAL----- 215
+RE+ D+ + +DE + +VD V+TT E+L L + L + F++L
Sbjct: 279 SREELT---DASWLSAKDEDHTPVRDVDCVITTRELLSLASSRGLALPNLPFKSLPQAYI 335
Query: 216 ---EESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS 272
++ L++ L + G AG+SGGY H +T + + + RN+
Sbjct: 336 PPFPDTTLNEFLFSKCSPGQ-STAAGTSGGY----LHHVLQTFQARNPGSEIVTQRGRNA 390
Query: 273 DFREVAL-EVEGKTLLKFALCYGFQNLQNIVRKVKMRKC--------------------- 310
D E L E +LK A YGF+N+QN+VRK+K +
Sbjct: 391 DVVEYTLMSSEHTPILKAARYYGFRNIQNLVRKLKPARASRLPGGNRRMPVGRGAASGGS 450
Query: 311 --DYQFVEVMACPSGCLNGGGQIK 332
DY +VEVMACP GC NGGGQI+
Sbjct: 451 GTDYAYVEVMACPGGCTNGGGQIR 474
>gi|325972134|ref|YP_004248325.1| hydrogenase, Fe-only [Sphaerochaeta globus str. Buddy]
gi|324027372|gb|ADY14131.1| hydrogenase, Fe-only [Sphaerochaeta globus str. Buddy]
Length = 582
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 122/405 (30%), Positives = 208/405 (51%), Gaps = 38/405 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVF-KKLTTFLKSLGVKS 58
+ EK + FL+ + K V++ ++P R L+E FG+ V KK+ L+ LG K+
Sbjct: 206 IYEKDEIATFLAAAADPQKQVVVQIAPSIRVGLSESFGLPAGTVTTKKIYAALRRLGAKA 265
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+ DT+ DLT++E E + R + +LP ++S CP W+ Y +K +
Sbjct: 266 VHDTNFGADLTIMEEGTELVTRLTK---------GGALPQMTSCCPAWVDYVQKYYPD-L 315
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L ++SS KSP Q +GA K +K+G P ++Y V +MPC KK E+ R++ ++
Sbjct: 316 LDHVSSAKSPMQMVGAIEKTFYAEKMGMDPAKMYTVAIMPCTAKKYESDRDEHMYA---- 371
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+RD VD VLTT E LI+ + ++F +L E D L G ++ G
Sbjct: 372 -SGFRD-------VDLVLTTREFARLIKSQGIDFLSLAEEEADSPLGEYSGAGTIF---G 420
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R A + G ++ ++E +R S+ ++ ++ +G T ++ A+ +G +
Sbjct: 421 ATGGVMEAAVRTAYHIVTGNELQ-NVEVDVVRGLSEIKKGTVDFDG-TPVRVAVVHGLSH 478
Query: 298 LQNIVRKVKMRKCD-----YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE 352
++ ++ +++ K + Y+F+EVMAC GC+ GGGQ KE L T +
Sbjct: 479 VKEVMDEIRAAKAEGKQAPYEFIEVMACRGGCIAGGGQPYGATDSLRKERSAGLYTDD-K 537
Query: 353 NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH--PVVKS 395
N + +N ++ LY+ +LE+P S KA +HT Y PV K+
Sbjct: 538 NSAVRRSHENESIQKLYETYLEKPMSHKAHHLLHTTYQEIPVYKA 582
>gi|182419999|ref|ZP_02951233.1| hydrogenase-1 [Clostridium butyricum 5521]
gi|237669483|ref|ZP_04529463.1| hydrogenase-1 [Clostridium butyricum E4 str. BoNT E BL5262]
gi|149384911|gb|ABR25256.1| hydrogenase [Clostridium butyricum]
gi|182376036|gb|EDT73623.1| hydrogenase-1 [Clostridium butyricum 5521]
gi|188530086|gb|ACD62594.1| FeFe hydrogenase [Clostridium butyricum]
gi|237654927|gb|EEP52487.1| hydrogenase-1 [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 574
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 120/378 (31%), Positives = 181/378 (47%), Gaps = 34/378 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI++++P R S+ E F + + V KL + L+ LG +FD + D+T++E E
Sbjct: 223 KHVIVAMAPAVRTSMGELFKMGYGVDVTGKLYSSLRQLGFDKVFDINFGADMTIMEEATE 282
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
FI R +N PM +S CP W+ AE +L +SS KSPQQ GA
Sbjct: 283 FIERI---------NNNGPFPMFTSCCPAWVRQAENYY-PELLGNLSSAKSPQQIFGAAS 332
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + G P +Y VT+MPC KK EA R + +EGL +D+VL
Sbjct: 333 KTYYPTVEGLDPKSVYTVTIMPCTAKKYEADRTEM-----------ENEGLR--NIDAVL 379
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ +NF LE+ D + G ++G ++GG E R A +
Sbjct: 380 TTRELAKMIKDAKINFATLEDEKADPAMGEYTGAGVIFG---ATGGVMEAALRTAKDFVE 436
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
K + +E+K +R D +E +E+ GK A+ G NL V +M + Y FV
Sbjct: 437 DKDLI-DIEYKQVRGLDGIKEATVEIGGKNY-NVAVINGSANLTKFVEGGQMDEKQYHFV 494
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN----VMLADPFKNPLVRSLYDE 371
EVM+CP GC+NGGGQ ++ + L N + KN + +Y+E
Sbjct: 495 EVMSCPGGCVNGGGQPHVAAKDRDTANVRAVRASVLYNQDKTAVKRKSHKNEALMKMYNE 554
Query: 372 WLEQPGSEKAKKHVHTEY 389
++ PG KA + +H +Y
Sbjct: 555 YMGMPGQHKAHELLHLKY 572
>gi|164612837|gb|ABY63664.1| [FeFe] hydrogenase [Clostridium butyricum]
Length = 574
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 120/378 (31%), Positives = 181/378 (47%), Gaps = 34/378 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI++++P R S+ E F + + V KL + L+ LG +FD + D+T++E E
Sbjct: 223 KHVIVAMAPAVRTSMGELFKMGYGVDVTGKLYSSLRQLGFDKVFDINFGADMTIMEEATE 282
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
FI R +N PM +S CP W+ AE +L +SS KSPQQ GA
Sbjct: 283 FIERI---------NNNGPFPMFTSCCPAWVRQAENYY-PELLGNLSSAKSPQQIFGAAS 332
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + G P +Y VT+MPC KK EA R + +EGL +D+VL
Sbjct: 333 KTYYPTVEGLDPKSVYTVTIMPCTAKKYEADRTEM-----------ENEGLR--NIDAVL 379
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ +NF LE+ D + G ++G ++GG E R A +
Sbjct: 380 TTRELAKMIKDAKINFATLEDEKADPAMGEYTGAGVIFG---ATGGVMEAALRTAKDFVE 436
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
K + +E+K +R D +E +E+ GK A+ G NL V +M + Y FV
Sbjct: 437 DKDLI-DIEYKQVRGLDGIKEATVEIGGKNY-NVAVINGSANLTKFVEGGQMDEKQYHFV 494
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN----VMLADPFKNPLVRSLYDE 371
EVM+CP GC+NGGGQ ++ + L N + KN + +Y+E
Sbjct: 495 EVMSCPGGCVNGGGQPHVAAKDRDTANVRAVRASVLYNQDKTAIKRKSHKNEALMKMYNE 554
Query: 372 WLEQPGSEKAKKHVHTEY 389
++ PG KA + +H +Y
Sbjct: 555 YMGMPGQHKAHELLHLKY 572
>gi|242768778|ref|XP_002341638.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Talaromyces stipitatus ATCC 10500]
gi|218724834|gb|EED24251.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Talaromyces stipitatus ATCC 10500]
Length = 593
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 124/363 (34%), Positives = 178/363 (49%), Gaps = 61/363 (16%)
Query: 21 IISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKS----------IFDTSCSRDLT 69
+ S+SPQ RASLA +GIS + + L+ G++S + DT R +
Sbjct: 119 VASVSPQVRASLAATYGISERKAGYMIDQLLRGPQGLRSGGKHGNGFTWVIDTDVLRQMV 178
Query: 70 LIEACNEFIARYKQSQESDDERSNSS--LPMLSSACPGWICYAEKQLGSYILPYISSVKS 127
L A E + SS P+LSSACPGWICYAEK ++LP++S +KS
Sbjct: 179 LTLAAQEVTESLSAPSTCKESGRYSSPKRPILSSACPGWICYAEKT-HPHVLPHLSRLKS 237
Query: 128 PQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGL 187
PQ G +K + + LG P +I+H+ VMPC+DKKLEA+RE+ + ++
Sbjct: 238 PQALAGTFVKSILSRALGIAPSQIWHLAVMPCFDKKLEASREELTEA--AWNKSSNTSQS 295
Query: 188 EIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL-------------DKML---TNVDDEG 231
+ +VD V+T+ E+L L + ++ +L PL D L T+ +
Sbjct: 296 PVRDVDCVITSRELLMLASSRNISLPSLPLKPLALAYAPHFPDSTIDSFLFSGTHTSKQS 355
Query: 232 HLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GKTLLKFA 290
Y G+SGGY + + G IE + RNSD E +L E +T++K A
Sbjct: 356 LAY---GTSGGYLYYILSSHQERHPGSRIEA----QRGRNSDVVEYSLVSESNETIMKAA 408
Query: 291 LCYGFQNLQNIVRKVKMRKC---------------------DYQFVEVMACPSGCLNGGG 329
YGF+N+QN+VRK+K + DY FVEVMACP GC NGGG
Sbjct: 409 RYYGFRNIQNLVRKMKPARASRLPGAKRGTTGSGVNGSSGLDYAFVEVMACPGGCTNGGG 468
Query: 330 QIK 332
QI+
Sbjct: 469 QIR 471
>gi|134299511|ref|YP_001113007.1| hydrogenase [Desulfotomaculum reducens MI-1]
gi|134052211|gb|ABO50182.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Desulfotomaculum reducens MI-1]
Length = 659
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 163/304 (53%), Gaps = 28/304 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K V+ ++P RA+L E FG+ + V KK+ T L+ +G +FDT + D+T IE NEF
Sbjct: 223 KTVVCQIAPAPRAALGEEFGLGSVDVTKKVVTALRKIGFDKVFDTVFTADMTTIEESNEF 282
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
++R + + +LP+ +S CPGW+ YAE + +L +SS +SPQQ GA +K
Sbjct: 283 LSRLVKGE---------NLPLFTSCCPGWVKYAE-EFHPELLSNLSSCRSPQQMFGAVLK 332
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
++LG P +++ V+VMPC KK EA R +F + E Y +VD+VLT
Sbjct: 333 KKYAKELGIAPQDMFVVSVMPCTAKKYEAKRPEF-----TTEGAY--------DVDAVLT 379
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
T E +I+ + F LEES D+ + G L+ G++GG E+V R+ A L
Sbjct: 380 TVEAARMIKEAGIIFNTLEESEFDQPMQQATGSGVLF---GTTGGVMESVIRYVAGKLLN 436
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
EG ++ + R + ++A G L A+ G + +++K++ + D Q VEV
Sbjct: 437 A--EGRVDVEFTRGMEDTKIASINVGDNKLNLAVVNGLSATEALIQKIQSGELDVQAVEV 494
Query: 318 MACP 321
MACP
Sbjct: 495 MACP 498
>gi|50344697|dbj|BAD29951.1| hydrogenase [Clostridium paraputrificum]
Length = 582
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 119/381 (31%), Positives = 190/381 (49%), Gaps = 40/381 (10%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI++++P R ++ E F + + V KL T L+ LG IFD + D+T++E E
Sbjct: 223 KHVIVAMAPAVRTAMGELFNMGYGVDVTGKLYTALRELGFDRIFDINFGADMTIMEEATE 282
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY---ILPYISSVKSPQQTIG 133
+ R ++ PM +S CPGW+ +Q+ +Y +L +SS KSPQQ G
Sbjct: 283 LLERIEKK---------GPFPMFTSCCPGWV----RQVENYYPELLENLSSAKSPQQIFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
K + G P++I+ VT+MPC KK EA RED +LD + +D
Sbjct: 330 TASKTYYPHIAGIDPEKIFTVTIMPCTAKKFEADRED--MELDG-----------LRNID 376
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+VLTT E+ I+ K + F LE+S D + G ++ G++GG E R A +
Sbjct: 377 AVLTTRELAKFIKEKKIAFAKLEDSEADPAMGEYTGAGVIF---GATGGVMEAAIRTAKE 433
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ K +E +L++ +R + +E ++ + G+ A+ G NL + +M +Y
Sbjct: 434 FVEKKELE-NLDYTEVRGLNGIKEASVNIGGED-YNVAVINGSANLFEFIESGRMNSKEY 491
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN----VMLADPFKNPLVRSL 368
F+EVM CP GC+NGGGQ + K IK++ L N +N + +
Sbjct: 492 HFIEVMTCPGGCVNGGGQPHVNNLEREKIDIKSVRASVLYNQDKSAKKRKSHENVALMKM 551
Query: 369 YDEWLEQPGSEKAKKHVHTEY 389
YDE++ QPG KA + +H +Y
Sbjct: 552 YDEYMGQPGRGKAHELLHYKY 572
>gi|336464368|gb|EGO52608.1| hypothetical protein NEUTE1DRAFT_91105 [Neurospora tetrasperma FGSC
2508]
Length = 581
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 128/374 (34%), Positives = 186/374 (49%), Gaps = 69/374 (18%)
Query: 9 EFLSNINKGKAVIISLSPQSRASLAEHFG--ISPLQVFKKLTT-FLKSLGVKS------- 58
E L N + K + S+SPQSRASLA G ++ Q + + FL G+
Sbjct: 115 EGLEN-SDAKLYVASVSPQSRASLAAACGNGVTEQQADRMIEQLFLGEQGLARGGKWGNK 173
Query: 59 ---IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLG 115
+ DT+ +R+ TL+ +E + + ++ P+L+++CPGW+CYAEK
Sbjct: 174 FTWVVDTNTAREATLVLGSDEVLGGLIAPSD------KAATPVLTASCPGWVCYAEKTH- 226
Query: 116 SYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE---DFV 172
Y+LP++S VKSPQ +G +K + + L P+ I+H+ VMPC+DKKLEA+RE D V
Sbjct: 227 PYVLPHLSRVKSPQALMGTLLKTSLSRILDIAPERIWHLAVMPCFDKKLEASREELTDAV 286
Query: 173 FQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDE-- 230
+ D + G + +VD V+T+ EVL L + +F +L S + D+
Sbjct: 287 WAGDGK------PGRGVRDVDCVITSKEVLMLAASRGYDFFSLSAS-MPPQTPRFPDQLI 339
Query: 231 -------GHLYGV--AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEV 281
GH AG+SGG + RH L K ++ RN+D E L
Sbjct: 340 HDFLFRPGHRQQSREAGTSGGNMHFILRH----LQAKNPGSQIQTVPGRNADVVEYKLTA 395
Query: 282 E-GKTLLKFALCYGFQNLQNIVRKVKMRKC----------------------DYQFVEVM 318
E G+ + K A YGF+N+QN+VRK+K K DY +VEVM
Sbjct: 396 EAGEVMFKAARYYGFRNIQNLVRKLKPAKASRMPGGKPFGSAKRPAGKASGLDYGYVEVM 455
Query: 319 ACPSGCLNGGGQIK 332
ACP GC NGGGQIK
Sbjct: 456 ACPGGCTNGGGQIK 469
>gi|225572307|ref|ZP_03781171.1| hypothetical protein RUMHYD_00601 [Blautia hydrogenotrophica DSM
10507]
gi|225040189|gb|EEG50435.1| hydrogenase, Fe-only [Blautia hydrogenotrophica DSM 10507]
Length = 587
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/394 (29%), Positives = 200/394 (50%), Gaps = 37/394 (9%)
Query: 1 MLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ EK S+ + ++ ++ V+ ++P + +L E F + P V KK++ +K LG +
Sbjct: 218 LTEKDSIHKAIAALDDPNTTVVWQMAPAIQNTLGEEFCLPPGTDVTKKISAAMKQLGGYA 277
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
F T S D+T++E EFI R + LPM++S CPGW+ Y E
Sbjct: 278 -FTTDFSADVTIMEEGTEFIQRVTKG---------GVLPMMTSCCPGWVKYMEYHYPDQ- 326
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L ++S+ KSPQQ GA +K+++ +K+G + I +++MPC KK E R + +
Sbjct: 327 LDHLSTCKSPQQMFGALVKNYLPEKIGVPAENICQISIMPCVAKKFERDRTEM------E 380
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
E RD VD VLTT E L +L+ +N A++E D + G ++G
Sbjct: 381 SENGRD-------VDIVLTTREAAKLFKLRGINLAAIQEEEFDDFMGEGSGAGRIFG--- 430
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R L G I+ ++++ R +E ++++ G +K A+ G N
Sbjct: 431 TTGGVMEAALRTVVWKLTGGKID-QIDYQEARGYKGLKEASVKI-GDLEVKIAIVNGIGN 488
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVM 355
++ ++ ++ K Y F+EVMACP GCLNGGG SP + + ++ +Y +N
Sbjct: 489 VKPVMEDIRAGKSPYHFIEVMACPGGCLNGGGA---PLTASPDMIARRMDQMYESDKNSA 545
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ +N V+ LY+E+L++P + +HT Y
Sbjct: 546 IRRSHENKEVQKLYEEYLKEPCGHISHHLLHTAY 579
>gi|158320026|ref|YP_001512533.1| hydrogenase, Fe-only [Alkaliphilus oremlandii OhILAs]
gi|158140225|gb|ABW18537.1| hydrogenase, Fe-only [Alkaliphilus oremlandii OhILAs]
Length = 567
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 192/364 (52%), Gaps = 34/364 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
++ K VI ++P R +L E FG+ P +V K+ LK++G+ ++DT+ + D+T+IE
Sbjct: 219 DRSKRVIAQVAPAVRVALGEEFGLEPGEVTIGKIVAALKAIGIDEVYDTAFAADMTVIEE 278
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
EF+ R ++ LP+ +S CPGW+ +AE + ++ ++SS KSPQQ G
Sbjct: 279 SKEFMERLSLGED---------LPLFTSCCPGWVKFAENKFPD-MMDHVSSCKSPQQMFG 328
Query: 134 ATIK-HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
A +K ++ +K E ++VMPC KK EAARE+F ++E RD V
Sbjct: 329 AVLKEYYKNEKNNAEGKETVVISVMPCTAKKAEAAREEF------EQEGIRD-------V 375
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D V+TT E+ LI+ + F LEE D G ++G ++GG E V
Sbjct: 376 DFVITTQELALLIKEAGIIFHQLEEESFDMPFGLASGSGIIFG---ATGGVTEAVVTRLL 432
Query: 253 KTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
K + L FK +R + +E V+GK + K A+ +G +N +++++K +
Sbjct: 433 KDKPDHSTKDIL-FKEVRGLENLKEAVFNVDGKEV-KVAIVHGLKNTDELIKQIKAGERY 490
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETI-YLENVMLADPFKNPLVRSLYD 370
Y F+EVMACP GC+ GGGQ P + +E K L + ++ +D KNP+V SL++
Sbjct: 491 YDFIEVMACPGGCVAGGGQPIPVNAEMRRERAKGLYKLDRTSHIKSSD--KNPIVASLFE 548
Query: 371 EWLE 374
L+
Sbjct: 549 GILK 552
>gi|325971420|ref|YP_004247611.1| hydrogenase, Fe-only [Sphaerochaeta globus str. Buddy]
gi|324026658|gb|ADY13417.1| hydrogenase, Fe-only [Sphaerochaeta globus str. Buddy]
Length = 594
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 124/379 (32%), Positives = 189/379 (49%), Gaps = 31/379 (8%)
Query: 20 VIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
V++ +P R L E G+ V ++ + L+SLG +FDT + DLT++E E I
Sbjct: 229 VLVQTAPAIRVGLGEAMGLKEGSLVTGRMVSALRSLGFDKVFDTQFTADLTIMEEAYELI 288
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAE----KQLGSYILPYISSVKSPQQTIGA 134
R E LPM++S PGWI + E +Q+G ++SS KSPQQ GA
Sbjct: 289 HRLTHQGE---------LPMITSCSPGWIKFIETFYPEQVG-----HLSSCKSPQQMFGA 334
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS-QEETYRDEGLEIPEVD 193
K ++ P +I V++MPC KK EA R + D +E+ E +VD
Sbjct: 335 IAKTFYAEQANLDPRKIRVVSIMPCTAKKFEAGRSEMDSSFDYWKEKMNLGEDERFCDVD 394
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
LTT E+ +++ ++F AL+E D L ++ SSGG E R A +
Sbjct: 395 WALTTRELAKMLKQVGIDFSALKEEAFDDPLGASTGGAVIF---ASSGGVMEAALRTAVE 451
Query: 254 TLFGKVIEGHLEFKTIR-NSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
L G V+ +EF +R + RE AL+V G + +K A+ N + ++ +++ Y
Sbjct: 452 KLTGSVL-AEVEFAQLRERTGIREAALQV-GDSTIKVAVANTLSNARVLLDQIQGGTSPY 509
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYD 370
F+EVM CP GCL GGGQ P P + L K ++IY E+ + +NP ++ LY
Sbjct: 510 AFIEVMTCPDGCLGGGGQ--PIPTNADIRL-KRAQSIYEEDRHKPIRKSHENPAIQDLYA 566
Query: 371 EWLEQPGSEKAKKHVHTEY 389
+L+QP SE + +HT Y
Sbjct: 567 RFLDQPLSEMSHHLLHTTY 585
>gi|169351249|ref|ZP_02868187.1| hypothetical protein CLOSPI_02028 [Clostridium spiroforme DSM 1552]
gi|169292311|gb|EDS74444.1| hydrogenase, Fe-only [Clostridium spiroforme DSM 1552]
Length = 582
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 124/399 (31%), Positives = 210/399 (52%), Gaps = 43/399 (10%)
Query: 3 EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSI 59
EK+ + + ++ +N K VI+ +P RASL E FG+ P+ +V K+ LK +G +
Sbjct: 208 EKEEVHDVIAALNDPTKHVIVQTAPAVRASLGEEFGM-PIGTRVTGKMVHALKLMGFDKV 266
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
+DT+ DLT++E +EFI+R + +N LPM++S PGW+ Y E + +L
Sbjct: 267 YDTNFGADLTIMEEGHEFISRIQ---------NNGVLPMITSCSPGWVNYIEHEY-PELL 316
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
++SS KSP +GA +K + ++ P +IY V++MPC KK E RE+ +
Sbjct: 317 DHLSSCKSPHMMLGAMLKSYYAKENNIDPKDIYVVSIMPCVAKKGEKEREENL------- 369
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK-MLTNVDDEGHLYGVAG 238
+GL+ +VDSVLTT E+ LI++ +NF+ L++ D+ M G ++ G
Sbjct: 370 ----TDGLK--DVDSVLTTRELGKLIKMFGINFKDLKDEDFDQDMFGEYTGAGVIF---G 420
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
+SGG E R L K + +L++ +R + +E ++++ G + A+ +
Sbjct: 421 ASGGVMEAALRTVVDVLTKKDLT-NLDYHAVRGEEGVKEASIKI-GDLTVNVAVAHSMTL 478
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-----IKPKPGQSPKELIKTLETIYLE 352
+ ++ +K Y F+E+M CP GC+NGGGQ + G K+ + +Y E
Sbjct: 479 AKPLLDDIKNGTSKYHFIEIMGCPGGCVNGGGQSYINALTRNSGFDWKQ--ARAKALYDE 536
Query: 353 NVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
++ L KN ++ LY ++L +P SEKA +HT Y
Sbjct: 537 DLSLPVRKSHKNSQIQKLYADFLGEPNSEKAHHLLHTHY 575
>gi|116181550|ref|XP_001220624.1| hypothetical protein CHGG_01403 [Chaetomium globosum CBS 148.51]
gi|121790764|sp|Q2HEF1.1|NAR1_CHAGB RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|88185700|gb|EAQ93168.1| hypothetical protein CHGG_01403 [Chaetomium globosum CBS 148.51]
Length = 586
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 121/361 (33%), Positives = 183/361 (50%), Gaps = 59/361 (16%)
Query: 18 KAVIISLSPQSRASLAEHFG--ISPLQVFKKLTTFLKSL-----------GVKSIFDTSC 64
K + S+SPQ+RASLA G ++ Q + L G + DT+
Sbjct: 127 KLFVASVSPQTRASLAAACGGAVTEQQAGWMIEQLLMGPAGLAGGGKHGNGFTWVVDTNT 186
Query: 65 SRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
+R+ L+ +E + S D+ ++ P+L+S+CPGW+CYAEK Y+LP++S
Sbjct: 187 AREACLMLGSDEVLG--GGSWGGSDKPTS---PILTSSCPGWVCYAEKTH-PYVLPHLSR 240
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
VKSPQ +G +K + + LG PD ++H+ VMPC+DKKLEA+RE+ D+ +
Sbjct: 241 VKSPQALMGTLLKTTLSRVLGIAPDRVWHLAVMPCFDKKLEASREELT---DTAWGSGGV 297
Query: 185 EGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES-PLDK-MLTNVDDEGHLYGV------ 236
G + +VD V+T+ E+L L K V+F L +S P+ + M + D L+
Sbjct: 298 PGRGVRDVDCVITSKEILMLAASKGVDFFGLAKSAPVKQPMFPDSDIHRFLFPAQRRKQL 357
Query: 237 --AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-LEVEGKTLLKFALCY 293
G+SGG + + + K ++ RN+D E A L G+T+ K A Y
Sbjct: 358 RDGGTSGGNLHYIIQD----VLSKHAGSQIQMTRGRNADVVEFAVLSSSGETIFKAARYY 413
Query: 294 GFQNLQNIVRKVKMRKC----------------------DYQFVEVMACPSGCLNGGGQI 331
GF+N+QN+VRK+K K ++ +VEVMACP GC NGGGQI
Sbjct: 414 GFRNIQNLVRKLKPAKASRMPGGKPFGSARRPAGKSATLEHSYVEVMACPGGCTNGGGQI 473
Query: 332 K 332
K
Sbjct: 474 K 474
>gi|406883036|gb|EKD30694.1| hypothetical protein ACD_77C00487G0004 [uncultured bacterium]
Length = 596
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 132/407 (32%), Positives = 208/407 (51%), Gaps = 39/407 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
++EK ++E + I +K K V++ +P R L E G P +V K+ LK LG +
Sbjct: 209 LVEKNYIEEVWNAIADKTKHVVVQTAPAVRVGLGEELGYEPGTRVTGKMVAALKRLGFDA 268
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+ DT + DLT++E E + R K + D+ N LPM +S PGWI Y E +Y
Sbjct: 269 VMDTDFTADLTIMEEGTELLTRLKSALV--DKNPNIKLPMATSCSPGWIKYIEHMYPNY- 325
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L ++S+ KSPQQ GA +K + + PD+I V++MPC KK EA R +
Sbjct: 326 LDHLSTCKSPQQMFGALVKTYYAKARNLDPDKIVSVSIMPCTAKKFEANRPEM------H 379
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+ YRD +D VLTT E+ +I+ ++F L+++ D+++ G ++ G
Sbjct: 380 DSNYRD-------IDYVLTTRELAIMIKQAGIDFLKLKDANFDRLMGESTGAGVIF---G 429
Query: 239 SSGGYAETVFRHAAKTLFGKVIE-GHLEFKTIRNSD-FREVALEVEGKTL---------- 286
++GG E R A + + G+ + +L +R ++ RE +++E KTL
Sbjct: 430 ATGGVMEAALRTAYEIVTGREVPFENLNITPVRGTEGVREATVKIE-KTLKEWSFLEGVE 488
Query: 287 LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL 346
LK A+ +G N + ++ + + Y F+E MACP GCL GGGQ P SP+ K
Sbjct: 489 LKCAIAHGLVNAKKVMDSIVSGESHYHFIEFMACPGGCLGGGGQPIP---TSPEIRAKRA 545
Query: 347 ETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
E IY E+ + L NP V +Y ++L P EK+ +HT+Y P
Sbjct: 546 EAIYAEDEGMPLRKSHLNPEVIKIYKDFLITPLGEKSHHLLHTKYTP 592
>gi|421078124|ref|ZP_15539083.1| hydrogenase, Fe-only [Pelosinus fermentans JBW45]
gi|392523709|gb|EIW46876.1| hydrogenase, Fe-only [Pelosinus fermentans JBW45]
Length = 460
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 194/383 (50%), Gaps = 35/383 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ--VFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+K + ++ +P R SLAE FG+ PL V K+ LK LG ++DT+ + DLT++E
Sbjct: 105 DKKQFSMVQCAPAVRVSLAEEFGM-PLGSLVPGKMVAALKRLGFTRVYDTNFAADLTIME 163
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+E + R + SLPM +S CP W+ + E + ++ ++SS KSPQQ
Sbjct: 164 EGSELVKRITE---------GGSLPMFTSCCPAWVKFVENEYPE-LIDHLSSCKSPQQMA 213
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ K + G E+Y V +MPC KK EA+R + + Y+D V
Sbjct: 214 GSMFKTYGASVDGVDAREVYSVAIMPCTCKKFEASRPEM------KSSGYQD-------V 260
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D+VLTT E+ LI+ A++F AL E DK L G ++GV +GG E R A
Sbjct: 261 DAVLTTRELAYLIKEAAIDFNALPEESFDKPLGMYSGAGTIFGV---TGGVMEAAIRTAY 317
Query: 253 KTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
+ + + IE ++ ++R R+V L+ G LK + G +N+ I+ ++ K D
Sbjct: 318 ELITKEPIE-NVNVTSVRGEQGVRKVTLDT-GTLKLKTVVVSGLKNVIPILEDIQRGKAD 375
Query: 312 YQFVEVMACPSGCLNGGGQIK---PKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSL 368
+ F+EVM CP+GC++GGGQ K P G+ K + E +NP ++ +
Sbjct: 376 FHFMEVMTCPAGCISGGGQPKMLLPVDGRIAYVNRKFSTYQHDEEQRYRKSHENPEIQDI 435
Query: 369 YDEWLEQPGSEKAKKHVHTEYHP 391
Y ++L +P + K +HT Y P
Sbjct: 436 YKKFLGEPLGHTSHKLLHTHYKP 458
>gi|428671559|gb|EKX72477.1| Fe hydrogenase large subunit, C-terminal domain containing protein
[Babesia equi]
Length = 631
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 125/437 (28%), Positives = 200/437 (45%), Gaps = 116/437 (26%)
Query: 8 DEFLSNINKGKAV---IISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSC 64
D F++ I K K ++S+SPQ+ ++A +G+ P+ F KL+ + LG K+IF +
Sbjct: 82 DHFVTVIEKLKNAEHGVVSISPQTVYAIAACYGLDPVIAFGKLSHLFRILGAKNIFSMNV 141
Query: 65 SRDLTLIEACNEFIARYKQS--------------------QESDDERSNSSLPMLSSACP 104
+ + E+ EF+ ++ S Q D +++ LP++S+ CP
Sbjct: 142 GEMIAVHESKVEFVNKFLSSCPVNLQEDYRNGNLLPHDYAQNFGDLKNDRVLPIISNHCP 201
Query: 105 GWICYAEKQLGSYILPYISSVKSPQQTIGATIKH-----HICQKLG-------------- 145
GW YAEK L + + IS+V S Q G IK C+ LG
Sbjct: 202 GWTLYAEKMLDMHYIDRISAVSSSQLIQGLVIKALAHTVQFCKILGDTAELMLTDFPGFH 261
Query: 146 -------------------FRPDEIYHVTVMPCYDKKLEAAREDFVFQLD-----SQEET 181
++ IYHV++ PCYDK+LEA R + + +E T
Sbjct: 262 RMDKGELSILDTKTMMETEWKYKNIYHVSIAPCYDKRLEALRPQYEHDFERLLRKGREST 321
Query: 182 YRDEGLE--IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGV--- 236
+G I VD VL+T +V ++ +NFEAL E+PLD++ +GHL +
Sbjct: 322 GEGDGARHTIKLVDDVLSTSDVQAILNHLGLNFEALSEAPLDEI-----SDGHLKALLKI 376
Query: 237 ---AGS-----------------------------------SGGYAETVFRHAAKTLFGK 258
+G+ SGG+AE +F+ AA+ LFG+
Sbjct: 377 FQESGTLSEQSLEFSKDANLSILASRHGKINLYRPSKIYCQSGGFAEEIFKFAAENLFGR 436
Query: 259 VIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVM 318
++ +EF + N DF+E L LL+F + YG++N+QN+VR +K + ++E+M
Sbjct: 437 RVD-DVEFTSTINPDFKECILRSGDIILLRFIIAYGYRNVQNVVRMLK-DSTNISYIELM 494
Query: 319 ACPSGCLNGGGQIKPKP 335
+CP GC NG GQ+ P
Sbjct: 495 SCPGGCFNGPGQVLQVP 511
>gi|350296459|gb|EGZ77436.1| iron hydrogenase [Neurospora tetrasperma FGSC 2509]
Length = 581
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 127/374 (33%), Positives = 186/374 (49%), Gaps = 69/374 (18%)
Query: 9 EFLSNINKGKAVIISLSPQSRASLAEHFG--ISPLQVFKKLTT-FLKSLGVKS------- 58
E L N + K + S+SPQSRASLA G ++ Q + + FL G+
Sbjct: 115 EGLEN-SAAKLYVASVSPQSRASLAAACGNGVTEQQAGRMIEQLFLGEQGLARGGEWGNK 173
Query: 59 ---IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLG 115
+ DT+ +R+ TL+ +E + + ++ P+L+++CPGW+CYAEK
Sbjct: 174 FTWVVDTNTAREATLVLGSDEVLGGLIAPSD------KAATPVLTASCPGWVCYAEKTH- 226
Query: 116 SYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE---DFV 172
Y+LP++S VKSPQ +G +K + + L P+ I+H+ VMPC+DKKLEA+RE D +
Sbjct: 227 PYVLPHLSRVKSPQALMGTLLKTSLSRILDIAPERIWHLAVMPCFDKKLEASREELTDAI 286
Query: 173 FQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDE-- 230
+ D + G + +VD V+T+ EVL L + +F +L S + D+
Sbjct: 287 WARDGK------PGRGVRDVDCVITSKEVLMLAASRGFDFFSLSAS-MPPQTPRFPDQLI 339
Query: 231 -------GHLYGV--AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEV 281
GH AG+SGG + RH L K ++ RN+D E L
Sbjct: 340 HDFLFRPGHRQQSREAGTSGGNMHFILRH----LQAKNPGSQIQTVPGRNADVVEYKLIA 395
Query: 282 E-GKTLLKFALCYGFQNLQNIVRKVKMRKC----------------------DYQFVEVM 318
E G+ + K A YGF+N+QN+VRK+K K DY +VEVM
Sbjct: 396 EAGEVMFKAARYYGFRNIQNLVRKLKPAKASRMPGGKPFGSAKRPAGKSSGLDYGYVEVM 455
Query: 319 ACPSGCLNGGGQIK 332
ACP GC NGGGQIK
Sbjct: 456 ACPGGCTNGGGQIK 469
>gi|357040965|ref|ZP_09102747.1| hydrogenase, Fe-only [Desulfotomaculum gibsoniae DSM 7213]
gi|355355824|gb|EHG03627.1| hydrogenase, Fe-only [Desulfotomaculum gibsoniae DSM 7213]
Length = 672
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 130/382 (34%), Positives = 193/382 (50%), Gaps = 35/382 (9%)
Query: 14 INKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
++ K V+ ++P R +L E FG+S V K+ LK LG +FDT + DLT IE
Sbjct: 219 LDPSKTVVFQIAPAVRVALGEEFGLSAGSAVTGKVVAALKKLGADKVFDTLFAADLTTIE 278
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
EFI+R ++ + LP+ +S CP W+ Y E Q + +L ISS +SPQQ
Sbjct: 279 ESMEFISRLEKGDK---------LPLFTSCCPAWVKYCE-QAHADLLANISSCRSPQQMF 328
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ +K H Q +G P E+ V+VMPC KK EA R +F + +V
Sbjct: 329 GSLVKKHYAQVIGKEPGEVVCVSVMPCTAKKFEATRPEFTTG-------------GVRDV 375
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLTT E+ +I+ + F LE + D L + G L + G+SGG E+V R +
Sbjct: 376 DIVLTTVELAQMIKEAGIVFNELEPAGFDNPL-GMGSGGAL--IFGASGGVMESVVRFVS 432
Query: 253 KTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
G I G ++F +R +E +EV G+ LK A+ G N + +V+++K +
Sbjct: 433 GYTSGAEI-GRIDFYPVRGMQGLKEAEVEVNGQK-LKLAVVNGIANAEKLVQRIKSGEAG 490
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLY 369
Y VEVMACP GC+ GGGQ P+ + ++ L+TIY + M + N V +
Sbjct: 491 YHAVEVMACPGGCIGGGGQ--PEVNDTAAR-VQRLKTIYNLDTMEQVHKAQDNIYVNHII 547
Query: 370 DEWLEQPGSEKAKKHVHTEYHP 391
++WL GS +HT Y P
Sbjct: 548 NQWLNGTGSATVHHELHTRYVP 569
>gi|331269709|ref|YP_004396201.1| hydrogenase [Clostridium botulinum BKT015925]
gi|329126259|gb|AEB76204.1| hydrogenase [Clostridium botulinum BKT015925]
Length = 582
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 185/388 (47%), Gaps = 45/388 (11%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N K VI++++P RAS+ E F + + V KL T LK L +FD + DLT+IE
Sbjct: 226 NPKKHVIVAIAPSVRASIGEAFNMGYGIDVTGKLYTSLKILRFDKVFDLNFGADLTIIEE 285
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
E I R K +N PM +S CPGWI EK ++P +SS KSPQQ G
Sbjct: 286 SCELIKRIK---------NNGPFPMFTSCCPGWIRQVEKYFKE-LIPNLSSTKSPQQIFG 335
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + + P +I+ VT+MPC KK E+ R+D EG I +D
Sbjct: 336 AATKTYYPHIMNMNPSDIFTVTIMPCTAKKFESERDDMDI-----------EG--INSID 382
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+VLT E++ LI+ ++F+ LEES D + G ++ G++GG E R A
Sbjct: 383 AVLTARELVKLIKNAKIDFKNLEESTPDPAMGEYSGAGVIF---GATGGVMEAALRTAKD 439
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLK-----FALCYGFQNLQNIVRKVKMR 308
L E + KTI S R E LK A+ G N+ + K+
Sbjct: 440 FL-----ENNEHLKTIDYSSIRGFNGIKEATVTLKEQNYNIAVINGASNVFKFMNSDKIN 494
Query: 309 KCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI--KTLETIYL----ENVMLADPFKN 362
K Y F+EVM+C GC+NGGG P + +ELI K L + L +N+ +N
Sbjct: 495 KKQYHFIEVMSCEGGCINGGGH--PHINSNDRELINYKQLRSSVLYNQDKNLSKRKAHEN 552
Query: 363 PLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
+ +Y ++ +PG++ A K H Y+
Sbjct: 553 EALIKMYKNYIGKPGNDLAHKIFHISYN 580
>gi|310658148|ref|YP_003935869.1| Periplasmic [Fe] hydrogenase large subunit (Fe hydrogenlyase)
[[Clostridium] sticklandii]
gi|308824926|emb|CBH20964.1| Periplasmic [Fe] hydrogenase large subunit (Fe hydrogenlyase)
[[Clostridium] sticklandii]
Length = 456
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 122/383 (31%), Positives = 196/383 (51%), Gaps = 37/383 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K + ++ +P R ++AE FG+ + K+ L+ LG ++DT+ S DLT++E
Sbjct: 99 DKNQFSVVQCAPAVRVAIAEDFGMDLGSLTPGKMAAALRKLGFDRVYDTNFSADLTIMEE 158
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
E I R + N LPM +S CP W+ Y E+ Y L ++S+ KSPQQ G
Sbjct: 159 GTELIERVTK---------NEKLPMFTSCCPAWVKYMEQSHPEY-LDHLSTCKSPQQMAG 208
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + + +I V++MPC K E+ R +++S E RD VD
Sbjct: 209 AIFKTYGAKLDNKSAKDIASVSIMPCTCKSFESERT----EMNSSGE--RD-------VD 255
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
VLTT E+ LI+ ++F L+E D+ L N G+++GV +GG E R +
Sbjct: 256 VVLTTRELAYLIKEMDIDFVNLQEENFDQPLGNYTGAGNIFGV---TGGVMEAAIRTGYE 312
Query: 254 TLFGKVIEGHLEFKTIR-NSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ + I+ +++ +R N +F E ++V G LK A+ G +N++ I+ +K K DY
Sbjct: 313 LITNQPID-NVDVVAVRGNKNFSESIIKV-GDLELKVAVVAGLKNVEPIIEAMKNGKADY 370
Query: 313 QFVEVMACPSGCLNGGGQIKPK---PGQSPKELIKTLETIYLEN--VMLADPFKNPLVRS 367
FVEVM CP GC++GGGQ PK P P + Y + L +NP ++
Sbjct: 371 HFVEVMTCPEGCISGGGQ--PKVLLPKHKPMAYENRISGTYQHDSESKLRKSHENPAIKK 428
Query: 368 LYDEWLEQPGSEKAKKHVHTEYH 390
LY ++L+ P K+ + +HT+Y+
Sbjct: 429 LYKDFLKNPLGHKSHELLHTKYY 451
>gi|319937321|ref|ZP_08011728.1| HymC protein [Coprobacillus sp. 29_1]
gi|319807687|gb|EFW04280.1| HymC protein [Coprobacillus sp. 29_1]
Length = 582
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 126/403 (31%), Positives = 202/403 (50%), Gaps = 51/403 (12%)
Query: 3 EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSI 59
EK+ + + +N K V++ +P RASL E FG+ P+ +V K+ LK LG +
Sbjct: 208 EKEEIHNVIEALNNPAKHVVVQTAPAVRASLGEEFGM-PIGTRVTGKMVAALKLLGFDKV 266
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
+DT+ DLT++E EFI R + + LPM++S PGWI Y EK+ +L
Sbjct: 267 YDTNFGADLTIMEEGYEFINRLQ---------NGGVLPMITSCSPGWINYCEKEYPD-LL 316
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
++SS KSP +GA IK + ++ P IY V++MPC KK E R +
Sbjct: 317 DHLSSCKSPHMMLGAMIKSYYAKQHQLDPKNIYVVSIMPCVAKKGEKERSQMM------- 369
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK-MLTNVDDEGHLYGVAG 238
+DE + +VD+VLTT E+ LI++ VNF L++ D+ M G ++G
Sbjct: 370 ---KDE---MKDVDAVLTTRELGKLIKMFGVNFIDLKDEEFDQDMFGEYTGAGVIFG--- 420
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCYGFQN 297
+SGG E R L + ++ ++E+ ++R +E +L+V G + A+ +
Sbjct: 421 ASGGVMEAALRTVVDVLTNQDLD-NIEYHSVRGQRGLKEASLQV-GDLKVNVAVAHSMTI 478
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT---------LET 348
+ ++ ++K Y F+E+M CP GC+NGGGQ LI+ +
Sbjct: 479 AKPLLEEIKAGTSKYHFIEIMGCPGGCINGGGQ------SYVNALIRNSGFDFKGARAKA 532
Query: 349 IYLENVMLA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+Y E+ + KN ++ LYDE+LE P S A + +HT Y
Sbjct: 533 LYDEDRAMPARKSHKNTQIQKLYDEFLEHPNSHIAHELLHTTY 575
>gi|85117692|ref|XP_965304.1| hypothetical protein NCU03204 [Neurospora crassa OR74A]
gi|74618782|sp|Q7SGW5.1|NAR1_NEUCR RecName: Full=Cytosolic Fe-S cluster assembly factor nar-1;
AltName: Full=Nuclear architecture-related protein 1
gi|28927111|gb|EAA36068.1| hypothetical protein NCU03204 [Neurospora crassa OR74A]
Length = 581
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 182/365 (49%), Gaps = 68/365 (18%)
Query: 18 KAVIISLSPQSRASLAEHFG--ISPLQVFKKLTT-FLKSLGVKS----------IFDTSC 64
K + S+SPQSRASLA G ++ Q + + FL G+ + DT+
Sbjct: 123 KLYVASVSPQSRASLAAACGNGVTEQQAGRMIEQLFLGEQGLARGGKWGNKFTWVVDTNT 182
Query: 65 SRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
+R+ TL+ +E + + ++ P+L+++CPGW+CYAEK Y+LP++S
Sbjct: 183 AREATLVLGSDEVLGGLIAPSD------KAATPVLTASCPGWVCYAEKTH-PYVLPHLSR 235
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE---DFVFQLDSQEET 181
VKSPQ +G +K + + L P+ I+H+ VMPC+DKKLEA+RE D V+ D +
Sbjct: 236 VKSPQALMGTLLKTSLSRILDIAPERIWHLAVMPCFDKKLEASREELTDAVWAGDGK--- 292
Query: 182 YRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDE---------GH 232
G + +VD V+T+ EVL L + +F +L S + D+ GH
Sbjct: 293 ---PGRGVRDVDCVITSKEVLMLAASRGFDFFSLSAS-MPPQTPRFPDQLIHDFLFRPGH 348
Query: 233 LYGV--AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GKTLLKF 289
AG+SGG + RH L K ++ RN+D E L E G+ + K
Sbjct: 349 RQQSREAGTSGGNMHFILRH----LQAKNPGSQIQTVPGRNADVVEYKLIAEAGEVMFKA 404
Query: 290 ALCYGFQNLQNIVRKVKMRKC----------------------DYQFVEVMACPSGCLNG 327
A YGF+N+QN+VRK+K K DY +VEVMACP GC NG
Sbjct: 405 ARYYGFRNIQNLVRKLKPAKTSRMPGGKPFGSAKRPAGKASGLDYGYVEVMACPGGCTNG 464
Query: 328 GGQIK 332
GGQIK
Sbjct: 465 GGQIK 469
>gi|260946019|ref|XP_002617307.1| hypothetical protein CLUG_02751 [Clavispora lusitaniae ATCC 42720]
gi|238849161|gb|EEQ38625.1| hypothetical protein CLUG_02751 [Clavispora lusitaniae ATCC 42720]
Length = 527
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 142/459 (30%), Positives = 214/459 (46%), Gaps = 92/459 (20%)
Query: 1 MLEKQSLDEFLSNINKGKAVII-SLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSI 59
++ + S ++ S + K + + + S+S Q+RASLA +G + K + F + LG K +
Sbjct: 83 LVAQHSHEQLRSVLKKNEHIFVASISHQTRASLAHAYGRPVSDMDKLIVAFFRRLGFKYV 142
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL--PMLSSACPGWICYAEKQLGSY 117
T+ R L++++ ++Q E+ +SL P+LSS CPGW+ YAEK +
Sbjct: 143 VGTAVGRKLSMVQ----------EAQRILREKDTNSLKGPVLSSVCPGWVLYAEK-THPH 191
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+LPY+S VKSPQQ G +K ++L ++IYHV VMPC+DKKLEAAR +
Sbjct: 192 VLPYMSPVKSPQQITGCILKTLSAEELAVPREKIYHVAVMPCFDKKLEAARPEA------ 245
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKM------------LT 225
DE L P+VD V+T E++ L + + + ES K
Sbjct: 246 ------DESLSGPDVDCVITAKELVSLAEAMGHSIVEISESDDKKNSKLKSEQGDMVDCN 299
Query: 226 NVDDEGHLY----------------GVAGS-SGGYAETVFRHAAKTLFGKVIEGH--LEF 266
+ DD L+ +GS SGG+A R A + K + + +F
Sbjct: 300 SKDDPSSLFRSCAPSRFPFAELSWANDSGSESGGWAHNYLRLAQQHFISKNPDTYQAADF 359
Query: 267 KTI----RNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK------------- 309
RNSD E L G TL A+ GF+N+QN+VR++K K
Sbjct: 360 SIACVGGRNSDVYEWRLTHGGSTLASAAVVNGFRNIQNLVRRLKTSKTPLVRRRRKRTEA 419
Query: 310 ------------CDYQFVEVMACPSGCLNGGGQIK-PKPGQSPKELIKTLETIYLENVML 356
CDY VE+MACP GC+NGGGQI P+P Q KE + + Y ++
Sbjct: 420 EESAEESADPARCDY--VEIMACPGGCINGGGQISAPQPTQE-KEWLTEVRAAY-ADINT 475
Query: 357 ADPFKNP-LVRSLYDEWLEQPGSEKAKKHVHTEYHPVVK 394
D P L++ L D + ++ T++H V K
Sbjct: 476 VDLVSTPELIQRLVDASKKFEQDVSPQRLFQTQFHEVEK 514
>gi|414153110|ref|ZP_11409437.1| Iron hydrogenase 1 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
gi|411455492|emb|CCO07339.1| Iron hydrogenase 1 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
Length = 523
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 120/413 (29%), Positives = 213/413 (51%), Gaps = 31/413 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
+ E+ +D+ + + +K V++ +P +R +L E FG+ P + + K LK LG +
Sbjct: 125 ITERDEIDKVVKALEDKNIHVVVQTAPATRVALGEEFGMPPGSIVEGKQVAALKKLGFDA 184
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ + DLT++E E + R + D + LP +S PGW+ + E +
Sbjct: 185 VFDTNFTADLTIMEEGTELVRRV-----AGDLKGVKPLPQFTSCSPGWVKFCE-YFYPDL 238
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L ++SS KSPQQ +GA +K + ++ G P +I+ V++MPC KK E R +++
Sbjct: 239 LEHMSSCKSPQQMLGALVKTYYAKEKGIDPAKIFSVSIMPCTAKKYECNRP----EMNDA 294
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+ +E L +VD VLTT E+ LI++K ++ LE++ D ++ ++ G
Sbjct: 295 GKHVGNEKLR--DVDVVLTTRELARLIKMKGIDINNLEDAQYDPLMGEGTGAAVIF---G 349
Query: 239 SSGGYAETVFRHAAKTLFGK-VIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQ 296
++GG E R A + + E L +R +E +LE+ G + A+C+G
Sbjct: 350 ATGGVMEAAVRSAYFLITKENPPEALLNLTPVRGLQGVKEASLEIPGVGQVNVAICHGLS 409
Query: 297 NLQNIVRKVKMRKCD-----YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIK--TLETI 349
N + ++ +++ K Y F+E M+CP GC++GGGQ P+ P + ++ L +I
Sbjct: 410 NARKVLDQLREDKKQGKPPRYHFIEFMSCPGGCISGGGQ--PRTSLPPSDQVRQARLNSI 467
Query: 350 YLENVMLAD---PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 399
Y + + +N V LY ++LE+P S A++ +HTEY K+ T +
Sbjct: 468 YQIDAKIYKKRLSHENQEVAMLYQKFLEKPNSHLAEELLHTEYVDRSKTFTPK 520
>gi|238486138|ref|XP_002374307.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Aspergillus flavus NRRL3357]
gi|259511265|sp|B8N122.1|NAR1_ASPFN RecName: Full=Cytosolic Fe-S cluster assembly factor nar1; AltName:
Full=Nuclear architecture-related protein 1
gi|220699186|gb|EED55525.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Aspergillus flavus NRRL3357]
Length = 562
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/377 (32%), Positives = 177/377 (46%), Gaps = 74/377 (19%)
Query: 21 IISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-----------GVKSIFDTSCSRDLT 69
+ S+SPQ RASLA +GIS + + FL G + DT+ RD
Sbjct: 120 VASVSPQVRASLAATYGISEKEATYMIDQFLSGPHGLRAGGKHGSGFSWVVDTNVMRDAI 179
Query: 70 LIEACNEFIARYKQ-SQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSP 128
L+ +E K+ S + + + P+LSSACPGWICYAEK ++LP++S +KSP
Sbjct: 180 LVLTADEVSETLKEPSARAISKDTLPKRPVLSSACPGWICYAEKT-HPFVLPHLSRLKSP 238
Query: 129 QQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE 188
Q G +K + + LG P ++H+ +MPC+DKKLEA+RE +L + D G+
Sbjct: 239 QALTGTFLKTVLSKALGVPPSRVWHLAIMPCFDKKLEASRE----ELTDVSWSPLDGGVP 294
Query: 189 IPE-------VDSVLTTGEVLDLIQLKAVNFEAL-------------EESPLDKMLTNVD 228
+ E VD V+TT E+L L + ++ L + L+ L
Sbjct: 295 LTESNKPVRDVDCVITTRELLTLASSRGISLPTLPLKSLAPSYTPHFPDETLNAFLFRKQ 354
Query: 229 DEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGKTLL 287
+ AG+SGGY H KT K + + RN+D E +L G+ L+
Sbjct: 355 NGSEQSMEAGTSGGY----LHHVLKTFQAKNPGSEIVTQRGRNADVVEYSLMSPGGEPLM 410
Query: 288 KFALCYGFQNLQNIVRKVKMRK--------------------------------CDYQFV 315
K A YGF+N+QN+VRK+K + DY +V
Sbjct: 411 KAARYYGFRNIQNLVRKLKPARVSRLPGARVPAASAGGNRRQPISRNSASAGSGTDYAYV 470
Query: 316 EVMACPSGCLNGGGQIK 332
EVMACP GC NGGGQI+
Sbjct: 471 EVMACPGGCTNGGGQIR 487
>gi|365842938|ref|ZP_09383904.1| putative ferredoxin hydrogenase HydA1 [Flavonifractor plautii ATCC
29863]
gi|364574198|gb|EHM51669.1| putative ferredoxin hydrogenase HydA1 [Flavonifractor plautii ATCC
29863]
Length = 583
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 127/394 (32%), Positives = 208/394 (52%), Gaps = 33/394 (8%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
++E +E + I + K VI+ ++P R L + FG+ V K+ T L+ LG
Sbjct: 207 IVETDCTNEVTAAIQDPSKHVIVQVAPSVRVGLGDEFGMEAGAVVTGKMVTALRMLGFDK 266
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT++E +E + R ++ E LPM++S PGW+ Y EK +
Sbjct: 267 VFDTNFSADLTIMEEGSELLKRIREGGE---------LPMITSCSPGWVTYLEKH-HPEL 316
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+ ++S+ KSPQ GA K + QK+G+ P ++ V+VMPC KK EA+R +
Sbjct: 317 IDHLSTAKSPQAMFGAVAKTYYAQKMGWDPHDVVSVSVMPCTAKKYEASRPEL------G 370
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+ Y+D VD VLTT E+ LI+ ++ L ES D L G ++G
Sbjct: 371 RDGYQD-------VDYVLTTRELAKLIRYVGLDLSVLPESEFDSPLGTGSGAGAIFG--- 420
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN--SDFREVALEVEGKTLLKFALCYGFQ 296
++GG E R A + GK + LEF +R + +E ++++G T LK A+ G +
Sbjct: 421 ATGGVMEAALRTAYELYTGKTLP-RLEFDAVRGDINAIKEATIDLDG-TPLKVAVANGLK 478
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVML 356
N + ++R+V+ + DY F+E+MACP GC+ GGGQ I+ L I ++ L
Sbjct: 479 NAEELIRRVERGEADYIFIEIMACPGGCIGGGGQPIGTNNAVRDARIQALYEID-RSLPL 537
Query: 357 ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
+NP ++++Y+E+ P S+++ + +HT YH
Sbjct: 538 RKSHENPEIKTIYEEFFGAPLSQRSHELLHTHYH 571
>gi|373119594|ref|ZP_09533689.1| hydrogenase, Fe-only [Lachnospiraceae bacterium 7_1_58FAA]
gi|371662223|gb|EHO27430.1| hydrogenase, Fe-only [Lachnospiraceae bacterium 7_1_58FAA]
Length = 583
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 128/394 (32%), Positives = 206/394 (52%), Gaps = 33/394 (8%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
++E +E + I N K VI+ ++P R L + FG+ V K+ T L+ LG
Sbjct: 207 IVETDYTNEVTAAIQNPSKHVIVQVAPSVRVGLGDEFGMEAGAVVTGKMVTALRMLGFDK 266
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT++E +E + R R LPM++S PGW+ Y EK +
Sbjct: 267 VFDTNFSADLTIMEEGSELLKRI---------REGGKLPMITSCSPGWVTYLEKH-HPEL 316
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+ ++S+ KSPQ GA K + QK+G+ P ++ V+VMPC KK EA+R +
Sbjct: 317 IGHLSTAKSPQAMFGAVAKTYYAQKMGWDPHDVVSVSVMPCTAKKYEASRPEL------G 370
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+ Y+D VD VLTT E+ LI+ ++ L ES D L G ++G
Sbjct: 371 RDGYQD-------VDYVLTTRELAKLIRYVGLDLSVLPESEFDSPLGTGSGAGAIFG--- 420
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN--SDFREVALEVEGKTLLKFALCYGFQ 296
++GG E R A + GK + LEF +R + +E ++++G T LK A+ G +
Sbjct: 421 ATGGVMEAALRTAYELYTGKTLP-RLEFDAVRGDINAIKEATIDLDG-TPLKVAVTNGLK 478
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVML 356
N + ++R+V+ + DY F+E+MACP GC+ GGGQ I+ L I ++ L
Sbjct: 479 NAEELIRRVERGEADYIFIEIMACPGGCIGGGGQPIGTNNAVRDARIQALYEID-RSLPL 537
Query: 357 ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
+NP ++++Y+E+ P S+++ + +HT YH
Sbjct: 538 RKSHENPEIKTIYEEFFGAPLSQRSHELLHTHYH 571
>gi|331245344|ref|XP_003335309.1| hypothetical protein PGTG_17089 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309314299|gb|EFP90890.1| hypothetical protein PGTG_17089 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 571
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 143/394 (36%), Positives = 193/394 (48%), Gaps = 76/394 (19%)
Query: 21 IISLSPQSRASLAEHFGISPLQV-FKKLTT-FLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
I+S+S S AS + + L FK L F +S + DTS S+ L L+E+ EF
Sbjct: 111 IVSISSHSLASFVAYNQLDSLSTGFKVLKKYFTRSHNFALVLDTSFSQRLHLLESQREFK 170
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLG-SYILPYISSVKSPQQTIGATIK 137
++ +E+ + S P+L+S+CP WICYAEK G + IL IS VKS QQ G+ +K
Sbjct: 171 EHRRRQKEA--KVSGGKAPLLASSCPAWICYAEKTQGKNGILEMISRVKSAQQIQGSLLK 228
Query: 138 H-HICQKLGFRPDE-IYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+ +G E IYHV VM CYDKKLEA+R DF DEG I +VD V
Sbjct: 229 SPRFAESVGLGSAEPIYHVCVMSCYDKKLEASRSDF----------QSDEG--IKDVDCV 276
Query: 196 LTTGEVLDLIQLKAVN-FEALEES-----PLDKMLTNVDDEGHLYGVAGSSGGYAETVFR 249
LTT EV ++IQ + +A +E+ LD + H + SSGGY + R
Sbjct: 277 LTTREVQEMIQEDGFDILQAAQETEESGQTLDSQVGIPIWIDHPPPIGSSSGGYLFNLLR 336
Query: 250 HAAKTLFGKVIEG-HLEFKTIRNSDFREVALEV---------------EGKTLLKFALCY 293
+ T G +I+ L R SD+ E L++ E +TL AL Y
Sbjct: 337 ASVPTDRGNIIDRLRLTVDRKRGSDYVEYRLQLAHASSSQDIQDIPTQEPETLFYGALFY 396
Query: 294 GFQNLQNIVRKVK----------------MRKCD------------YQFVEVMACPSGCL 325
GF+NLQN++RK+ R+ D Y FVEVMACPSGC+
Sbjct: 397 GFKNLQNLIRKIAPPSSSSTTNPRARIMGRRRKDQGVEAAKEADRTYDFVEVMACPSGCV 456
Query: 326 NGGGQI----KPKPGQSP---KELIKTLETIYLE 352
NGGGQI +P P S K+LI LE +Y +
Sbjct: 457 NGGGQIPFGSQPGPSSSAPTNKQLIAKLEQVYFQ 490
>gi|251778554|ref|ZP_04821474.1| hydrogenase-1 [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|243082869|gb|EES48759.1| hydrogenase-1 [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 576
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 184/377 (48%), Gaps = 32/377 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI++++P RA++ E F + + V K+ T L+ LG IFD + D+T++E E
Sbjct: 224 KHVIVAMAPSVRAAMGEAFKMGYGVDVTGKIYTALRMLGFNKIFDINFGADMTIMEEATE 283
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
I+R + PM +S CP W+ E +I +SS KSPQQ GA
Sbjct: 284 LISRVNEG---------GPFPMFTSCCPSWVREVENYFPEFI-DNLSSAKSPQQIFGAAS 333
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + + G P +++ VT+MPC KK EA RE+ + GL +D+V+
Sbjct: 334 KTYYPEIEGLDPKDVFTVTIMPCTSKKFEADREEM-----------ENNGLR--NIDAVI 380
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ +NF LE+S D + G ++G ++GG E R A +
Sbjct: 381 TTRELAKMIKTAKINFSTLEDSEADPSMGEYTGAGAIFG---ATGGVMEAALRSAKDFIE 437
Query: 257 GKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVE 316
K +E +E++ +R + + A G A+ G N+ + V+ V+M + Y F+E
Sbjct: 438 NKSLE-EIEYEQVRGLEGIKEATVTLGGQEYNIAVINGAANVFDFVKSVRMEEKQYHFIE 496
Query: 317 VMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN----VMLADPFKNPLVRSLYDEW 372
VM+CP GC+NGGGQ K I+T+ L N + +N + +Y+ +
Sbjct: 497 VMSCPGGCVNGGGQPHVNSKDRSKIDIRTVRASVLYNQDKGLSKRKSHENASLLKMYETY 556
Query: 373 LEQPGSEKAKKHVHTEY 389
+ +PG A + +H +Y
Sbjct: 557 MGKPGKGLAHELLHIKY 573
>gi|169830372|ref|YP_001716354.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C]
gi|169637216|gb|ACA58722.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C]
Length = 523
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 124/382 (32%), Positives = 197/382 (51%), Gaps = 25/382 (6%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+ G+ V++ +P +R SL E FG+ P V K L+ LG +++DT+ + DLT++E
Sbjct: 143 DPGRFVVVQTAPATRVSLGEEFGLPPGTWVAGKQVAALRRLGFDAVWDTNFTADLTIMEE 202
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
E I R K E LP+L+S PGW+ + E +LP++SS KSPQQ G
Sbjct: 203 ATELIKRIK------GELPGHPLPLLTSCSPGWVKFCE-YFYPNLLPHMSSCKSPQQMFG 255
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + +K P++I+ V++MPC KK EA R + + YR I +VD
Sbjct: 256 ALAKTYYAEKKNIDPEKIFSVSIMPCTAKKFEAQRPEM-----NASGLYRGTP-SIRDVD 309
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+VLTT E+ +++ K ++ L E D ++ ++G ++GG E R A
Sbjct: 310 AVLTTRELARMLKQKGIDLAGLPEEDYDPLMGKCTGGAIIFG---ATGGVMEAAVRTAFF 366
Query: 254 TLFGKVIEGHL-EFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
+ G L +R + +E AL+V G L+ A+C+G N + ++ ++ +
Sbjct: 367 FITGNEPPSDLLNLTPVRGLEGVKEGALDVPGVGTLRIAVCHGLANGRRVLEAMRDGRAP 426
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELI--KTLETIYLENVMLADPF--KNPLVRS 367
+ FVE MACP GC+ GGGQ P+ P + I K + +Y + +NP + +
Sbjct: 427 WHFVEFMACPGGCIGGGGQ--PRTAVPPTDEIRAKRIAALYHADARWERRLSHENPEILT 484
Query: 368 LYDEWLEQPGSEKAKKHVHTEY 389
LY E+LE P SE A++ +HTEY
Sbjct: 485 LYQEFLEHPMSELAEELLHTEY 506
>gi|225016115|ref|ZP_03705348.1| hypothetical protein CLOSTMETH_00059 [Clostridium methylpentosum
DSM 5476]
gi|224951112|gb|EEG32321.1| hypothetical protein CLOSTMETH_00059 [Clostridium methylpentosum
DSM 5476]
Length = 338
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 114/359 (31%), Positives = 177/359 (49%), Gaps = 31/359 (8%)
Query: 42 QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSS 101
V K+ L+ LG +FDT DLT++E NEFI R + + LPM++S
Sbjct: 6 NVKGKMVAALRRLGFDKVFDTDFGADLTIMEEANEFIERVQ---------NGGKLPMITS 56
Query: 102 ACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 161
PGWI Y E +L +S+ KSPQQ GA IK ++ G P +I V++MPC
Sbjct: 57 CSPGWINYCEHYFPD-MLDNLSTCKSPQQMTGAMIKTWYAEQNGLDPKDIVVVSIMPCTA 115
Query: 162 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLD 221
KK E R D + P++D VLTT E+ +I +NF L + D
Sbjct: 116 KKYEIHRAD-------------QDAAGYPDIDIVLTTRELARMINRAHINFTDLPDEEFD 162
Query: 222 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEV 281
L G ++ G++GG E R AA + GK + + +R +D + A
Sbjct: 163 PALGITTGAGAIF---GATGGVMEAALRTAADWITGKDLSVIDYYTDVRGTDGIKTATYD 219
Query: 282 EGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-IKPKPGQSPK 340
+K + G N + ++ +V+ + + F+E+M CP GC+NGGGQ ++P +
Sbjct: 220 IKDLTIKVGVASGLANAKELLNRVREGE-HFDFIEIMCCPGGCVNGGGQPLQPSSIYNFT 278
Query: 341 EL-IKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSI 396
+L K + +Y E+ + + K+P++ LY E+LE+PGS KA + +HT Y VK +
Sbjct: 279 DLKTKRAKALYDEDKELPIRKSHKSPIIEKLYKEYLEKPGSHKAHELLHTSYSAKVKPV 337
>gi|488597|gb|AAA85785.1| hydrogenase-1 [Clostridium saccharobutylicum]
Length = 574
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 118/382 (30%), Positives = 190/382 (49%), Gaps = 40/382 (10%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI++++P R S+ E F + + V KL +++LG +FD + D+T++E E
Sbjct: 223 KHVIVAMAPSIRTSMGELFKLGYGVDVTGKLYASMRALGFDKVFDINFGADMTIMEEATE 282
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY---ILPYISSVKSPQQTIG 133
FI R K +N PM +S CP W+ +Q+ +Y L +SS KSPQQ G
Sbjct: 283 FIERVK---------NNGPFPMFTSCCPAWV----RQVENYYPEFLENLSSAKSPQQIFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + Q G +++ VT+MPC KK EA RE+ +EG I +D
Sbjct: 330 AASKTYYPQISGISAKDVFTVTIMPCTAKKFEADREEMY-----------NEG--IKNID 376
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+VLTT E+ +I+ +NF LE+ D + G ++G ++GG E R A
Sbjct: 377 AVLTTRELAKMIKDAKINFANLEDEQADPAMGEYTGAGVIFG---ATGGVMEAALRTAKD 433
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ K + +E+ IR +E +E+ G+ A+ G NL + K+ + +Y
Sbjct: 434 FVEDKDLT-DIEYTQIRGLQGIKEATVEIGGENY-NVAVINGAANLAEFMNSGKILEKNY 491
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRSL 368
F+EVMACP GC+NGGGQ + K ++T+ L +N+ KN + ++
Sbjct: 492 HFIEVMACPGGCVNGGGQPHVSAKEREKVDVRTVRASVLYNQDKNLEKRKSHKNTALLNM 551
Query: 369 YDEWLEQPGSEKAKKHVHTEYH 390
Y +++ PG KA + +H +Y+
Sbjct: 552 YYDYMGAPGQGKAHELLHLKYN 573
>gi|327295534|ref|XP_003232462.1| iron-sulfur cluster assembly associated protein Nar1 [Trichophyton
rubrum CBS 118892]
gi|326465634|gb|EGD91087.1| iron-sulfur cluster assembly associated protein Nar1 [Trichophyton
rubrum CBS 118892]
Length = 597
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 123/384 (32%), Positives = 182/384 (47%), Gaps = 79/384 (20%)
Query: 17 GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCS 65
GK + S+SPQ RASLA +GIS + FL G + DT+
Sbjct: 105 GKLFVASVSPQVRASLAATYGISEKNAGYMIEQFLSGPNGLRAGGQHGSGFAWVVDTNIM 164
Query: 66 RDLTLIEACNEFIARYKQ--SQESDDERSNSSLP---MLSSACPGWICYAEKQLGSYILP 120
R L + E S S DE SLP +L+S+CPGWICYAEK ++LP
Sbjct: 165 RQAVLELSTAEVTESLNAAASTTSHDESGKFSLPNRPILASSCPGWICYAEKTH-PHVLP 223
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
++S +KSPQ G +K I +KL P +++H+ +MPC+DKKLEA+R++ +
Sbjct: 224 HLSRLKSPQALTGTFLKTIISKKLNISPSQVWHLAIMPCFDKKLEASRQELT------DV 277
Query: 181 TYRDEGLE-----IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT---------- 225
++R E L+ I +VD V+T+ E+L L + ++ +L PL L+
Sbjct: 278 SWRGEALDMASSPIRDVDCVITSKELLMLASSRNISLPSLPREPLPTHLSTPFPDQTIAQ 337
Query: 226 --NVDDEGHLY--GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-E 280
+ ++ H AG SGGY H T K + ++ + RN+D E L
Sbjct: 338 FLSTNNTLHFTQPAAAGPSGGY----LHHLLTTYQSKHADSIIQSQRGRNADVVEYTLVS 393
Query: 281 VEGKTLLKFALCYGFQNLQNIVRKVKMRKC------------------------------ 310
G+ ++K A YGF+N+QN+VRK+K +
Sbjct: 394 AAGEPIIKAARYYGFRNIQNLVRKMKPARASRLPGSRVNGPGARARSAPVSNGKPGAPTP 453
Query: 311 --DYQFVEVMACPSGCLNGGGQIK 332
++ +VEVMACP GC NGGGQI+
Sbjct: 454 PTEFSYVEVMACPGGCTNGGGQIR 477
>gi|373120537|ref|ZP_09534593.1| hydrogenase, Fe-only [Lachnospiraceae bacterium 7_1_58FAA]
gi|371657337|gb|EHO22639.1| hydrogenase, Fe-only [Lachnospiraceae bacterium 7_1_58FAA]
Length = 584
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 122/395 (30%), Positives = 192/395 (48%), Gaps = 36/395 (9%)
Query: 3 EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSI 59
EK L+ +N K V++ +P R +L E FG+ P+ V K+ T L+ LG +
Sbjct: 210 EKDDTARVLAALNDPAKHVVVGPAPSIRVTLGECFGL-PIGTNVEGKMVTALRRLGFDKV 268
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
FD + D T++E EF++R +LP+++S PGW+ Y E Q ++
Sbjct: 269 FDVDTAADFTILEEGTEFLSRLN---------GGGTLPLITSCSPGWVRYLE-QHAPDMI 318
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
ISS KSPQQ G+ +K + ++ G P +I+ V++MPC KK E RE+
Sbjct: 319 RNISSCKSPQQMFGSLVKTYYAEQAGMDPQDIFVVSIMPCTAKKYEVLREE--------- 369
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS 239
R +P VD LTT E+ +I + FE L + D ML ++ G+
Sbjct: 370 --QRLPNGCMP-VDVSLTTRELGRMITQAGLLFEHLPDGAFDPMLGVSTGAAAIF---GA 423
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNL 298
SGG E R + L G+ + LE++ +R + +E + E+ GKT ++ + G N+
Sbjct: 424 SGGVMEAALRTVVEQLTGEGM-APLEYQEVRGMEGVKEASYELPGKT-VRVCVASGLHNV 481
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENV 354
+ ++ ++ Y FVE MACP GC+NGGGQ IK L L E +
Sbjct: 482 KRVLDGIRDGSLQYDFVEFMACPGGCINGGGQPIQHANVRNFTDIKALRAAALYKQDEGM 541
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+NP+V+ +Y ++L +PG KA +H Y
Sbjct: 542 TYRRSHENPVVQKVYADFLGEPGGHKAHALLHCSY 576
>gi|374316822|ref|YP_005063250.1| hydrogenase, Fe-only [Sphaerochaeta pleomorpha str. Grapes]
gi|359352466|gb|AEV30240.1| hydrogenase, Fe-only [Sphaerochaeta pleomorpha str. Grapes]
Length = 582
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 129/408 (31%), Positives = 209/408 (51%), Gaps = 44/408 (10%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKS 58
+ E+ D F S + + K V++ ++P R L+E FG+ S KK+ T L+ +G
Sbjct: 206 IYERDETDIFRSAVADPEKKVVVQIAPSIRVGLSESFGLPSGTVTTKKIYTALRKIGADV 265
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
I DT+ S DLT++E +E + R + LP L+S CP WI Y EK +
Sbjct: 266 IHDTNFSADLTIMEEGSELVNRLT---------TGGVLPQLTSCCPAWIDYVEKYYPD-L 315
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L +SS KSP GA K + QK G P +I+ V +MPC KK E R+D + Q
Sbjct: 316 LDNVSSAKSPMMMQGAITKTYYAQKAGIDPAKIFSVAIMPCTAKKYEIIRDD-----NMQ 370
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
Y P+VD VLTT E+ LI+ ++F LEE D + G ++ G
Sbjct: 371 ASGY-------PDVDLVLTTRELARLIKSSGMDFLKLEEEEADSPIGEYSGAGTIF---G 420
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
++GG E R A + K +E +E + +R D ++ ++ +G T ++ A+ +G N
Sbjct: 421 ATGGVMEAAVRTAYHLVTKKEME-KVEVEAVRGLDNIKKGTVDFDG-TPVRVAVVHGLSN 478
Query: 298 LQNIVRKVKMRKCD-----YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL-ETIYL 351
++ ++ +++ K + Y+F+E+MAC GC+ GGGQ P + EL K E +Y
Sbjct: 479 VKVLMDEIRAAKAEGRTAPYEFIEIMACRGGCIAGGGQ----PYGADDELRKERSEGLYQ 534
Query: 352 E--NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH--PVVKS 395
+ + + +NP + +Y+++L +P S +A +HT+YH PV K+
Sbjct: 535 DDKDSKVRCSHQNPSILKIYEDFLTEPMSHEAHHLLHTKYHEIPVYKA 582
>gi|301507726|gb|ADK77883.1| hydrogenase [Chlorella sp. DT]
Length = 434
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 128/406 (31%), Positives = 201/406 (49%), Gaps = 42/406 (10%)
Query: 4 KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDT 62
+Q+LDE + +I ++P R ++AE G++P V +L T L+ LG +FDT
Sbjct: 42 QQALDELAKPKESRRLMIAQIAPAVRVAIAETIGLAPGDVTIGQLVTGLRMLGFDYVFDT 101
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
DLT++E E + R + E + LPM +S CPGW+ EK ++PY+
Sbjct: 102 LFGADLTIMEEGTELLHRLQDHLEQHPNKEEP-LPMFTSCCPGWVAMVEKS-NPELIPYL 159
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
SS KSPQ +GA IK++ Q++G +P +I +V+VMPC K+ EA RE F +
Sbjct: 160 SSCKSPQMMLGAVIKNYYAQQVGVQPSDICNVSVMPCVRKQGEADREWF-----NTTGLA 214
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 242
RD VD V+TT EV + + + L ES D + L+ G++GG
Sbjct: 215 RD-------VDHVVTTAEVGKIFLERGIKLNELPESNFDNPIGEGTGGALLF---GTTGG 264
Query: 243 YAETVFRHAAKTLFGKVIEGHLEFKTIR----------------NSDFREVALEVEGKTL 286
E R + + K + G ++F+ +R +S F+ A
Sbjct: 265 VMEAALRTVYEVVTQKPM-GRVDFEEVRGLEGIKEAEITLKPGDDSPFKAFAGADGQGIT 323
Query: 287 LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI-KT 345
LK A+ G N + +++ + K Y F+EVMACP GC+ GGGQ P + K+++ K
Sbjct: 324 LKIAVANGLGNAKKLIKSLSEGKAKYDFIEVMACPGGCIGGGGQ----PRSTDKQILQKR 379
Query: 346 LETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ +Y E + +NP +++LYD++L P S KA +HT Y
Sbjct: 380 QQAMYNLDERSAIRRSHENPFIQALYDKFLGAPNSHKAHDLLHTHY 425
>gi|375308958|ref|ZP_09774239.1| Periplasmic hydrogenase large subunit (Fe hydrogenlyase)
[Paenibacillus sp. Aloe-11]
gi|375078267|gb|EHS56494.1| Periplasmic hydrogenase large subunit (Fe hydrogenlyase)
[Paenibacillus sp. Aloe-11]
Length = 490
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 120/391 (30%), Positives = 192/391 (49%), Gaps = 34/391 (8%)
Query: 6 SLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDT 62
SL++ + K G+ I+ +P R SLAE FG+ P K+ L+ LG ++DT
Sbjct: 104 SLNKVTDMMKKPGQLRIVQCAPAIRVSLAEEFGM-PFGTLTPGKMAAALRRLGFDRVYDT 162
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
+ D+T++E E I R + LPM +S CP W+ +AE + +L ++
Sbjct: 163 NFGADVTIMEEGTELIRRVTE---------GGPLPMFTSCCPAWVRFAEIEYPD-LLDHL 212
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
SS KSP Q +GA +K + Q +P IY V +MPC K+ E R + + + Y
Sbjct: 213 SSCKSPMQMLGALVKTYGAQLDEVKPANIYSVAIMPCTCKQFECDRPEM------EADGY 266
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 242
RD VD VLTT E+ I+ + ++F L + D L G ++GV +GG
Sbjct: 267 RD-------VDEVLTTRELAYWIKQRGIDFMNLPDEEFDSPLGKYSGAGTIFGV---TGG 316
Query: 243 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIV 302
E R + L + + L+ +R + VA G+ LK A+ G Q+ ++
Sbjct: 317 VMEAAIRTGYELLTNEKLP-KLQLDFVRGEEGIRVAEVQVGELQLKVAVVAGLQHAYQLL 375
Query: 303 RKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE-TIYLENV--MLADP 359
+V+ +CDY F+EVM CP+GC++GGGQ K + E + + +IY + +
Sbjct: 376 DRVQAGECDYHFIEVMGCPAGCISGGGQPKLMLEKQKMEAYRARKSSIYGHDAASQVRKS 435
Query: 360 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
+NP + LYDE+L +P + +HT +H
Sbjct: 436 HENPFIIKLYDEFLGEPLGHVSHHLLHTTFH 466
>gi|187932889|ref|YP_001884306.1| hydrogenase-1 [Clostridium botulinum B str. Eklund 17B]
gi|187721042|gb|ACD22263.1| hydrogenase-1 [Clostridium botulinum B str. Eklund 17B]
Length = 576
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 185/378 (48%), Gaps = 32/378 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI++++P RA++ E F + + V K+ T L+ LG IFD + D+T++E E
Sbjct: 224 KHVIVAMAPSVRAAMGEAFKMGYGVDVTGKIYTALRMLGFNKIFDINFGADMTIMEEATE 283
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
I+R + PM +S CP W+ E +I +SS KSPQQ GA
Sbjct: 284 LISRVNKG---------GPFPMFTSCCPSWVREVENYFPEFI-DNLSSAKSPQQIFGAAS 333
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + + G P +++ VT+MPC KK EA RE+ + GL +D+V+
Sbjct: 334 KTYYPEIEGLDPKDVFTVTIMPCTSKKFEADREEM-----------ENNGLR--NIDAVI 380
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ +NF LE+S D + G ++G ++GG E R A +
Sbjct: 381 TTRELAKMIKTAKINFATLEDSEADPSMGEYTGAGAIFG---ATGGVMEAALRSAKDFIE 437
Query: 257 GKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVE 316
K +E +E++ +R D + A G A+ G N+ + V+ +M + Y F+E
Sbjct: 438 NKSLE-EIEYEQVRGLDGIKEATVTLGGQEYNIAVINGAANVFDFVKSGRMEEKQYHFIE 496
Query: 317 VMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN----VMLADPFKNPLVRSLYDEW 372
VM+CP GC+NGGGQ K I+T+ L N ++ +N + +Y+ +
Sbjct: 497 VMSCPGGCVNGGGQPHVNSKDRSKIDIRTVRASVLYNQDKGLVKRKSHENVSLLKMYETY 556
Query: 373 LEQPGSEKAKKHVHTEYH 390
+ +PG A + +H +Y+
Sbjct: 557 MGKPGKGLAHELLHIKYN 574
>gi|365844590|ref|ZP_09385427.1| putative ferredoxin hydrogenase HydA1 [Flavonifractor plautii ATCC
29863]
gi|364564250|gb|EHM42022.1| putative ferredoxin hydrogenase HydA1 [Flavonifractor plautii ATCC
29863]
Length = 584
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 122/395 (30%), Positives = 191/395 (48%), Gaps = 36/395 (9%)
Query: 3 EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSI 59
EK L+ +N K V++ +P R +L E FG+ P+ V K+ T L+ LG +
Sbjct: 210 EKDDTARVLAALNDPAKHVVVGPAPSIRVTLGECFGL-PIGTNVEGKMVTALRRLGFDKV 268
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
FD + D T++E EF++R +LP+++S PGW+ Y E Q ++
Sbjct: 269 FDVDTAADFTILEEGTEFLSRLN---------GGGTLPLITSCSPGWVRYLE-QHAPDMI 318
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
ISS KSPQQ G+ +K + ++ G P +I+ V++MPC KK E RE+
Sbjct: 319 RNISSCKSPQQMFGSLVKTYYAEQAGIDPQDIFVVSIMPCTAKKYEVLREE--------- 369
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS 239
R +P VD LTT E+ +I + FE L + D ML ++ G+
Sbjct: 370 --QRLPNGCMP-VDVSLTTRELGRMITQAGLLFEHLPDGAFDPMLGVSTGAAAIF---GA 423
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNL 298
SGG E R + L G + LE++ +R + +E + E+ GKT ++ + G N+
Sbjct: 424 SGGVMEAALRTVVEQLTGAGM-APLEYQEVRGMEGVKEASYELPGKT-VRVCVASGLHNV 481
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENV 354
+ ++ ++ Y FVE MACP GC+NGGGQ IK L L E +
Sbjct: 482 KRVLDGIRDGSLQYDFVEFMACPGGCINGGGQPIQHANVRNFTDIKALRAAALYKQDEGM 541
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+NP+V+ +Y ++L +PG KA +H Y
Sbjct: 542 TYRRSHENPVVQKVYADFLGEPGGHKAHALLHCSY 576
>gi|410657515|ref|YP_006909886.1| putative iron-only hydrogenase, catalytic subunit HymC
[Dehalobacter sp. DCA]
gi|410660552|ref|YP_006912923.1| putative iron-only hydrogenase, catalytic subunit HymC
[Dehalobacter sp. CF]
gi|409019870|gb|AFV01901.1| putative iron-only hydrogenase, catalytic subunit HymC
[Dehalobacter sp. DCA]
gi|409022908|gb|AFV04938.1| putative iron-only hydrogenase, catalytic subunit HymC
[Dehalobacter sp. CF]
Length = 594
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 121/403 (30%), Positives = 202/403 (50%), Gaps = 41/403 (10%)
Query: 3 EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIF 60
E ++ + IN K V++ ++P RA++ E FG+ P V KL + L+ LG +F
Sbjct: 205 ETDAIQDVWQAINDPNKRVVVQVAPAIRAAIGEEFGLEPGTLVTGKLASALRELGFDDVF 264
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + DLT++E EF+ R K + ++LPM++S PGWI Y E L
Sbjct: 265 DTNFTADLTIMEEGTEFLTRVKNALTG----GQATLPMITSCSPGWIKYVEHAYPEE-LD 319
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
++S+ KSP +GA K + K+ P ++Y V++MPC KK E +R +
Sbjct: 320 HLSTCKSPHTMLGALAKSYYADKIEVDPKDMYVVSIMPCTAKKFEVSRPEM--------- 370
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
++ G +P VD+VLTT E+ +I+ ++F LE+S D L ++GV +
Sbjct: 371 --QNNG--VPNVDAVLTTRELAKMIKEAGIDFVNLEDSKFDNPLGLSSGAADIFGV---T 423
Query: 241 GGYAETVFRHAAKTLFGKV-------IEGHLEFKTIRNSDF-----REVALEVEGKTLLK 288
GG E R + + G+ + + + I+ +D E ++G T +K
Sbjct: 424 GGVMEAALRTVYEVVTGRELPFDKLHVTPIVGLEQIKTADVIIENPVEAYKFLDGVT-VK 482
Query: 289 FALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLET 348
A+ G + ++ ++ + Y F+EVM CP GC++GGGQ +P +P+ K L+
Sbjct: 483 VAVTSGLAGAKILLDQIAKGESPYHFIEVMGCPGGCISGGGQPRP---TTPEIRQKRLQA 539
Query: 349 IYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
IY E+ L +N V LY E+L++P K+ + +HT Y
Sbjct: 540 IYKEDEGKQLRKSHENEDVMKLYAEFLKEPNGHKSHELLHTYY 582
>gi|224367282|ref|YP_002601445.1| protein HydA1 [Desulfobacterium autotrophicum HRM2]
gi|223689998|gb|ACN13281.1| HydA1 [Desulfobacterium autotrophicum HRM2]
Length = 464
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 119/392 (30%), Positives = 197/392 (50%), Gaps = 34/392 (8%)
Query: 4 KQSLDEFLSNINKGKAV-IISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFD 61
+ + + L+ + K V ++ +P R +L E FG++ + K+ T L+ LG ++D
Sbjct: 90 RGDVKKLLAALEDEKTVTLVQCAPAVRVALGEEFGLAYGVLTPGKMATSLRRLGFDRVYD 149
Query: 62 TSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPY 121
T+ + DLT++E E +AR ++ N LPM +S CPGW+ Y E +LP+
Sbjct: 150 TNFAADLTIMEEGAELLARLEK---------NEGLPMFTSCCPGWVKYLEDHYPD-LLPH 199
Query: 122 ISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEET 181
+SS KSPQQ G K + + G P +Y V +MPC KK E R+ +DS
Sbjct: 200 LSSCKSPQQMGGVLFKTYGAELAGVEPGCVYSVAIMPCTCKKYECDRDG----MDS--SG 253
Query: 182 YRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSG 241
+RD VD V+TT E+ L++ K + F L + D+ L G+++G S+G
Sbjct: 254 FRD-------VDLVITTRELAQLLKHKGIKFAGLADGEFDQPLGAYSGAGNIFG---STG 303
Query: 242 GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQN 300
G E R + + G ++ +E +R + FR +E +G LK + G Q++
Sbjct: 304 GVMEAALRSSLELATGVPLD-SVELNYLRGGEGFRVAQVEHQG-VQLKVGIVAGIQHVAP 361
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK-PGQSPKELIKTLETIYLEN--VMLA 357
++ K++ + D+ F+EVM CP GC++GGGQ K P Q + +Y + + L
Sbjct: 362 LLDKIQQGEADFHFIEVMCCPLGCVSGGGQPKTVLPQQRIHATQARKQALYRHDSGLELR 421
Query: 358 DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+NP ++ LY ++L P EK+ +H Y
Sbjct: 422 KSHENPQIQQLYKDFLGAPLGEKSHHLLHINY 453
>gi|189485525|ref|YP_001956466.1| NAD-dependent Fe-hydrogenase catalytic component [uncultured
Termite group 1 bacterium phylotype Rs-D17]
gi|170287484|dbj|BAG14005.1| NAD-dependent Fe-hydrogenase catalytic component [uncultured
Termite group 1 bacterium phylotype Rs-D17]
Length = 667
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 188/377 (49%), Gaps = 39/377 (10%)
Query: 18 KAVIISLSPQSRASLAEHFGISP---LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K V+++++P RAS+ E FG + + K+ T L+S+G +FD S + D+T++E
Sbjct: 222 KKVVVAIAPAVRASIGEVFGFAGGNGTETAGKIVTALRSMGFAKVFDVSFAADMTIVEEA 281
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
+EF+ R K+ N +P+ +S CP W+ + E+ +I +SS +SPQ G+
Sbjct: 282 DEFLNRLKK---------NKDMPLFTSCCPAWVKFVEQYYPDFI-SNLSSCRSPQAMYGS 331
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
K + + L +++ V++MPC KK EA R + + ++D
Sbjct: 332 VAKKIMPEMLKISKEDLTVVSIMPCTAKKFEARRPELSKN-------------GVADIDY 378
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
VLTT E+ +I+ + F LE S D L G ++G +SGG E V R
Sbjct: 379 VLTTQELARMIEEAGLLFGELEPSAFDMPLGFKTGGGVIFG---NSGGVTEAVLRDIVSN 435
Query: 255 LFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
G + +F +R D REV + G+ L A+ YG +N + I++ +K+ + Y
Sbjct: 436 NSGGAGKTE-QFVFVRGEDGLREVKVNFGGREL-NIAVVYGLKNARKILKDIKVDRSRYD 493
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN---VMLADPFKNPLVRSLYD 370
FVEVMACP GC+ G GQ P + KT + E+ + L P NP V+ +Y
Sbjct: 494 FVEVMACPGGCIGGAGQ----PVYKDLSVRKTRTKVLYESDKTMELRRPQDNPYVQKVYK 549
Query: 371 EWLEQPGSEKAKKHVHT 387
++ +PGS A +++HT
Sbjct: 550 DYFNKPGSCAAHEYLHT 566
>gi|56387327|gb|AAV86076.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 562
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 184/385 (47%), Gaps = 56/385 (14%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N K V++ ++P R L G K+ L+ +G IFDTS DLT+IE
Sbjct: 220 NPKKRVVVQIAPAVRVGLGTQLGEEDGRNAMGKMAAALRRMGFDKIFDTSVGADLTVIEE 279
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
NEF+++ + +N +LP+ +S CP W+ YAEK ++ +SS KSP
Sbjct: 280 TNEFVSKLQ---------NNEALPLFTSCCPAWVNYAEKTY-PELMKNVSSCKSPMGMFA 329
Query: 134 ATIKHHICQKLGFRPD--EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 191
A +K H +R D E+ V +MPC KK EAARE+F +++G +P+
Sbjct: 330 AVLKEH------YREDDRELVSVAIMPCSAKKFEAAREEF-----------KNDG--VPD 370
Query: 192 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFR-- 249
VD V+TT E ++++ + F LE LD+ + G ++GV +GG E V R
Sbjct: 371 VDYVVTTQEFVNMVNESGIAFSELEPEALDRPFQSCSGAGVIFGV---TGGVTEAVIRKV 427
Query: 250 ---HAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVK 306
L EG + ++ + + E+ K A+ G +N NI++ V+
Sbjct: 428 LSEQPVPALRSFAFEGVRGMEGVKETTINALDREI------KIAIVSGLKNADNIIKTVR 481
Query: 307 MRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPL 364
+ Y FVEVMACP GC+NG GQ P +E +K +Y + M ++ NPL
Sbjct: 482 AGEAHYGFVEVMACPGGCINGAGQ----PFAKAEEKVKRGAQLYKVDKMKSISRSDDNPL 537
Query: 365 VRSLYDEWLEQPGSEKAKKHVHTEY 389
+ SLY L+ +K + +H Y
Sbjct: 538 MDSLYSGILK----DKTHELLHVHY 558
>gi|323142351|ref|ZP_08077183.1| putative ferredoxin hydrogenase HydA1 [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413235|gb|EFY04122.1| putative ferredoxin hydrogenase HydA1 [Phascolarctobacterium
succinatutens YIT 12067]
Length = 574
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 126/376 (33%), Positives = 189/376 (50%), Gaps = 27/376 (7%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+ K ++ ++P R S AE F + P L ++ LK +G +FDT + D+T++E
Sbjct: 218 DPNKVTVVQVAPAVRTSWAEAFNLPPELATEGRMVATLKKIGFDYVFDTCYAADVTIMEE 277
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+E + ++ Q+ S PM +S CPGW+ Y K Y +P +S+ KSPQQ G
Sbjct: 278 ASELLEHLQKPQDH-------SWPMFTSCCPGWVSYVNKT-HPYFVPNLSTTKSPQQIFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + QK G +P EI +++MPC KK EAA +F + R G +VD
Sbjct: 330 ALAKSYFAQKKGLKPKEICSISIMPCVSKKREAA----LFSM-------RSSGTH--DVD 376
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
VLTT E + L++ + +N L+E P D L G ++ G+SGG E R A
Sbjct: 377 IVLTTREFIRLLRAEHINPAMLDEQPFDNPLGQSTGAGVIF---GASGGVMEAALRTAYH 433
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
+ GK F +R ++ R+V G L+ G N ++ ++K K Y
Sbjct: 434 VIEGKEAPED-AFTDVRGTEGRKVREFTLGGATLRTCTVSGLGNAGKLLDELKAGKVHYD 492
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWL 373
FVEVMACP GC+ GGGQ + L L TI N L NP V+ LY ++L
Sbjct: 493 FVEVMACPGGCVGGGGQPIHDGEERADVLGNKLYTID-SNRPLHQSHNNPDVQELYKDFL 551
Query: 374 EQPGSEKAKKHVHTEY 389
E+P SEKA++ +H+++
Sbjct: 552 EKPLSEKAEQLLHSDH 567
>gi|410727827|ref|ZP_11366022.1| hydrogenase, Fe-only [Clostridium sp. Maddingley MBC34-26]
gi|410597825|gb|EKQ52433.1| hydrogenase, Fe-only [Clostridium sp. Maddingley MBC34-26]
Length = 575
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 185/378 (48%), Gaps = 34/378 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI++++P R S+ E F + + V KL T L+ LG +FD + D+T++E E
Sbjct: 224 KHVIVAIAPSIRTSMGELFKLGYGVDVTGKLYTALRMLGFDKVFDINFGADMTIMEEATE 283
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
FI R K +N PM +S CP W+ E + L +SS KSPQQ GA
Sbjct: 284 FIERVK---------NNGPFPMFTSCCPSWVRLVENYYPEF-LENLSSAKSPQQIFGAAS 333
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + + G P +++ VTVMPC KK EA R++ ++G I +D+V+
Sbjct: 334 KTYYPEIEGLNPKDVFTVTVMPCTSKKFEADRKEMA-----------NDG--IRNIDAVI 380
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ +NF LE+ D + G ++G ++GG E R A +
Sbjct: 381 TTRELAKMIKDSKINFANLEDGKADLAMGEYTGAGVIFG---TTGGVMEAALRTAKDFVE 437
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
K + ++E+ +R D +E A+E+ G+ A+ G NL ++ K+ + Y F+
Sbjct: 438 DKDLT-NVEYTQVRGFDGIKEAAVEIGGENY-NIAVINGSSNLFEFMKSGKINEKQYHFI 495
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRSLYDE 371
EVM+CP GC+NGGGQ ++ L L +N+ KN + +Y E
Sbjct: 496 EVMSCPGGCINGGGQPHVNAKDRENVDVRALRASVLYNQDKNLEKRKSHKNSALLKMYHE 555
Query: 372 WLEQPGSEKAKKHVHTEY 389
++ PG A K +H +Y
Sbjct: 556 YMGAPGEGIAHKLLHIKY 573
>gi|399890389|ref|ZP_10776266.1| hydrogenase, Fe-only [Clostridium arbusti SL206]
Length = 574
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 125/396 (31%), Positives = 191/396 (48%), Gaps = 35/396 (8%)
Query: 1 MLEKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKS 58
+ EK +D +N K VI++++P RAS+ E F + + V K+ T L+ LG
Sbjct: 205 LTEKSHMDRVKDALNDPEKHVIVAMAPSVRASMGELFNMGFGVDVTGKIYTALRQLGFNK 264
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
IFD + D+T++E E + R K +N PM +S CPGW+ AE +
Sbjct: 265 IFDINFGADMTIMEEATELVQRIK---------NNGPFPMFTSCCPGWVRQAENYYPE-L 314
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L +SS KSPQQ GA K + G P + VTVMPC KK EA R +
Sbjct: 315 LNNLSSAKSPQQIFGAATKTYYPSITGLDPKNVVTVTVMPCTSKKFEADRPEM------- 367
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
++GL +D+V+TT E+ +I+ + F LE+S +D + G ++G
Sbjct: 368 ----ENDGLR--NIDAVITTRELAKMIKDAKIPFAKLEDSEVDPAMGEYSGAGVIFG--- 418
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
++GG E R A +E ++E+K +R D +E +E+ GK A+ G N
Sbjct: 419 ATGGVMEAALRSAKDFAENAELE-NIEYKQVRGLDGIKEAEVELAGKKY-NVAVINGASN 476
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT--LETIYLENVM 355
+ + KM + Y F+EVMAC GC+NGGGQ KP K IK+ +Y ++
Sbjct: 477 VFKFMESGKMNEKQYHFIEVMACHGGCVNGGGQPHVKPIDLEKVDIKSERASVLYNQDAH 536
Query: 356 LA--DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L N + +Y +++ PG A K +H +Y
Sbjct: 537 LTKRKSHNNTALIKMYKDYIGTPGEGLAHKILHFKY 572
>gi|410464900|ref|ZP_11318286.1| hydrogenase, Fe-only, partial [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409981979|gb|EKO38482.1| hydrogenase, Fe-only, partial [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 508
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 110/331 (33%), Positives = 172/331 (51%), Gaps = 33/331 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ--VFKKLTTFLKSLGVK 57
++ + +DE L+ + + K V+ ++P R L E F SP + ++ LK LG
Sbjct: 207 LVPRSEMDEVLAALADPTKTVVAQVAPAVRVGLGECFA-SPAGDPIMGRMVAALKRLGFD 265
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+++DT+ + DLT+IE EF+ R ++ LP +S CPGW+ +AE+
Sbjct: 266 AVYDTTFAADLTVIEEGQEFLTRAAAGEK---------LPQFTSCCPGWVQFAEQSF-PE 315
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+L +SS +SPQQ G+ +K + +K G ++ V++MPC KK EA R +F +D
Sbjct: 316 LLKNLSSCRSPQQMFGSLVKEMLPEKQGIARKDLIVVSIMPCTAKKFEARRPEFA--VDG 373
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
P+VD VLTT E+ +I + F ALE LD G ++
Sbjct: 374 S-----------PDVDFVLTTQELARMIDGAGLRFNALEPESLDMPFGFGTGAGVIF--- 419
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIR-NSDFREVALEVEGKTLLKFALCYGFQ 296
G+SGG E V R AA+ + GK + ++F +R +S RE LEV GKT L+ A+ +G
Sbjct: 420 GASGGVTEAVLRFAAEKITGKPL-ASVDFAAVRGDSGLREATLEVGGKT-LRLAIVHGLA 477
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNG 327
N + + +V +Y +EVMACP GC+ G
Sbjct: 478 NARAVAEQVVAGTSEYDLIEVMACPGGCIGG 508
>gi|307719055|ref|YP_003874587.1| hypothetical protein STHERM_c13740 [Spirochaeta thermophila DSM
6192]
gi|306532780|gb|ADN02314.1| hypothetical protein STHERM_c13740 [Spirochaeta thermophila DSM
6192]
Length = 583
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 121/380 (31%), Positives = 201/380 (52%), Gaps = 38/380 (10%)
Query: 21 IISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
++ ++P R ++ E FG P + K L+ LG +IFDT+ DLT++E +EF+
Sbjct: 227 VVQIAPAVRVAIGEAFGYEPGTLLTGKTYAALRRLGFDAIFDTNFGADLTIMEEASEFVE 286
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
R+ + +P++++ CP W+ Y EK ++P+ SS KSPQ + A +K +
Sbjct: 287 RFAHGK--------GPIPLITTCCPSWVDYLEKYYPE-MIPHFSSAKSPQMMLAAMVKTY 337
Query: 140 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
QK G P +I+ V+VMPC KK E R++ ++ Y+D+ D+ +TT
Sbjct: 338 YAQKKGIDPSKIFMVSVMPCTSKKYEIERDENMYS-----SGYKDQ-------DASITTR 385
Query: 200 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV 259
E+ +I+ ++F L + D+ L G ++GV +GG E R A + GK
Sbjct: 386 ELARMIKSAGIDFHNLPDEEADQPLGMYTGAGTIFGV---TGGVMEAAVRTAYYFVTGKE 442
Query: 260 IEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKM-----RKCDYQ 313
+E +E+ IR D +E L+++G T ++ A+ + N+Q ++ +VK ++ Y
Sbjct: 443 ME-KVEYTPIRGLDGVKEATLDIDG-TQVRIAVAHSISNVQYVLDRVKQALKEGKEPPYH 500
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDE 371
F+EVMAC GC+ GGGQ G + + K IY E + +NP ++ LY+E
Sbjct: 501 FIEVMACRGGCVGGGGQPY---GATDEIRAKRAAGIYTDDERSVYRCSHQNPAIKQLYEE 557
Query: 372 WLEQPGSEKAKKHVHTEYHP 391
+LE+P SEKA K++HT Y P
Sbjct: 558 FLEKPLSEKAHKYLHTHYTP 577
>gi|373457613|ref|ZP_09549380.1| hydrogenase, Fe-only [Caldithrix abyssi DSM 13497]
gi|371719277|gb|EHO41048.1| hydrogenase, Fe-only [Caldithrix abyssi DSM 13497]
Length = 573
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 129/399 (32%), Positives = 205/399 (51%), Gaps = 46/399 (11%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKS 58
+ E+ SL E + N K V++ +P +LAE FG+ + + L L+ LG
Sbjct: 204 LRERSSLKEVTDALQNPEKFVVVQHAPAVSVTLAEEFGLKAGSDADRLLVNALRRLGFDR 263
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT++E +E + R + + S+PM++S PGW+ + E+ +I
Sbjct: 264 VFDTAFSADLTIMEEASELVERLQ---------NGGSIPMMTSCSPGWVKFVEQFYPEFI 314
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
P +S+ KSPQQ +GA IK+ ++ G PD+I+ V+VMPC KK EA R +F
Sbjct: 315 -PNLSTCKSPQQMMGAVIKNIFAREQGISPDKIFSVSVMPCTAKKFEAERPEF------S 367
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
Y D +D+VLTT E++ LI++ + F++L+ D G L+ G
Sbjct: 368 HNGYAD-------IDAVLTTRELIRLIRMYGIEFDSLKPDEPDLPFGKRSTAGKLF---G 417
Query: 239 SSGGYAETVFRHAAKTLFGK-----VIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
+GG E R A + GK V E K IR + + +E L A+
Sbjct: 418 GTGGVMEAALRTAYFLITGKEPQKIVFEEVRGLKGIREARVKIADIE------LGVAVAN 471
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT-LETIYL- 351
G QN + ++ ++K + D F+EVM CP GC+ GGGQ P + I+T L+ +Y
Sbjct: 472 GIQNAKALLEQIKAGRDDLHFIEVMTCPGGCVGGGGQ----PFDTCPASIRTRLQALYQI 527
Query: 352 -ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
N + +NPL++ LYD +LE+P S ++ + +HT+Y
Sbjct: 528 DRNEAVRASHQNPLIQELYDRYLERPLSHRSHELLHTKY 566
>gi|168186810|ref|ZP_02621445.1| hydrogenase [Clostridium botulinum C str. Eklund]
gi|169295206|gb|EDS77339.1| hydrogenase [Clostridium botulinum C str. Eklund]
Length = 579
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 118/382 (30%), Positives = 182/382 (47%), Gaps = 34/382 (8%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N K VI++++P RAS+ E F + V KL T L+ LG IFD + DLT++E
Sbjct: 226 NPKKHVIVAIAPSVRASIGEAFNMGYGTDVTGKLYTVLRQLGFDKIFDLNFGADLTIVEE 285
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
NE + R K +N PM +S CP W+ AE + +LP +SS KSPQQ G
Sbjct: 286 ANELVERIK---------NNGPYPMFTSCCPAWVRQAENYFKN-LLPNLSSTKSPQQIFG 335
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + + + P +I+ VTVMPC KK E+ R+ + I +D
Sbjct: 336 AASKTYYPKLINLDPKDIFTVTVMPCTAKKFESQRDGMDIK-------------GISSID 382
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+VLT E++ +I+ ++F LE+ D + G L+ G++GG E R A +
Sbjct: 383 AVLTARELVKIIKDNKIDFPNLEDGVQDPAMGEYSGAGALF---GTTGGVMEAAIRTAKE 439
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
L K + ++E+K +R +E + + K A+ G N+ + + K Y
Sbjct: 440 LLENKSL-NNIEYKEVRGFKGIKETTVTINDKE-YNIAVINGSSNVFKFMNSDMINKKQY 497
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK----NPLVRSL 368
F+EVM+C GC+NGGG P + K L L N L P + N + +
Sbjct: 498 HFIEVMSCEGGCINGGGHPHVTPSERETVDYKKLRASVLYNKDLNLPKRKSHENTAIIKM 557
Query: 369 YDEWLEQPGSEKAKKHVHTEYH 390
YD ++ +PG+ A + H Y+
Sbjct: 558 YDNFIGKPGNHLAHEIFHFSYN 579
>gi|169771319|ref|XP_001820129.1| cytosolic Fe-S cluster assembly factor nar1 [Aspergillus oryzae
RIB40]
gi|121803716|sp|Q2UJY8.1|NAR1_ASPOR RecName: Full=Cytosolic Fe-S cluster assembly factor nar1; AltName:
Full=Nuclear architecture-related protein 1
gi|83767988|dbj|BAE58127.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871618|gb|EIT80775.1| nuclear architecture related protein [Aspergillus oryzae 3.042]
Length = 607
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 177/377 (46%), Gaps = 74/377 (19%)
Query: 21 IISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-----------GVKSIFDTSCSRDLT 69
+ S+SPQ RASLA +GIS + + FL G + DT+ RD
Sbjct: 120 VASVSPQVRASLAATYGISEKEATYMIDQFLSGPHGLRAGGKHGSGFSWVVDTNVMRDAI 179
Query: 70 LIEACNEFIARYKQ-SQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSP 128
L+ +E K+ S + + + P+LSSACPGWICYAEK ++LP++S +KSP
Sbjct: 180 LVLTADEVSETLKEPSARAISKDTLPKRPVLSSACPGWICYAEKT-HPFVLPHLSRLKSP 238
Query: 129 QQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE 188
Q G +K + + LG P ++H+ +MPC+DKKLEA+RE +L + D G+
Sbjct: 239 QALTGTFLKTVLSKALGVPPSRVWHLAIMPCFDKKLEASRE----ELTDVSWSPLDGGVP 294
Query: 189 IPE-------VDSVLTTGEVLDLIQLKAVNFEAL-------------EESPLDKMLTNVD 228
+ E VD V+TT E+L L + ++ L + L+ L
Sbjct: 295 LTESNKPVRDVDCVITTRELLTLASSRGISLPTLPLKSLAPSYTPHFPDETLNAFLFRKQ 354
Query: 229 DEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGKTLL 287
+ AG+SGGY H KT K + + RN+D E +L G+ L+
Sbjct: 355 NGSEQSMEAGTSGGY----LHHVLKTFQAKNPGSEIVTQRGRNADVVEYSLMSPGGEPLM 410
Query: 288 KFALCYGFQNLQNIVRKVKMRK--------------------------------CDYQFV 315
K A YGF+N+QN+VRK+K + D+ +V
Sbjct: 411 KAARYYGFRNIQNLVRKLKPARVSRLPGARVPAASAGGNRRQPISRNSASAGSGTDFAYV 470
Query: 316 EVMACPSGCLNGGGQIK 332
EVMACP GC NGGGQI+
Sbjct: 471 EVMACPGGCTNGGGQIR 487
>gi|367019132|ref|XP_003658851.1| hypothetical protein MYCTH_2295162 [Myceliophthora thermophila ATCC
42464]
gi|347006118|gb|AEO53606.1| hypothetical protein MYCTH_2295162 [Myceliophthora thermophila ATCC
42464]
Length = 590
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 122/361 (33%), Positives = 178/361 (49%), Gaps = 58/361 (16%)
Query: 18 KAVIISLSPQSRASLAE--HFGISPLQVFKKLTTFLKSL-----------GVKSIFDTSC 64
K + S+SPQ+RA+LA G++ Q + L G + DT+
Sbjct: 130 KLFVASVSPQTRANLAAACGGGVTARQAGWMIEQLLMGPAGLAAGGKHGNGFTWVVDTNT 189
Query: 65 SRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
+R+ L+ +E + R ++ Q S D + + P+L+S+CPGW+CYAEK Y+LP++S
Sbjct: 190 AREACLVLGSDEVLGR-REGQGSSD---SPTPPVLTSSCPGWVCYAEKTH-PYVLPHLSR 244
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
VKSPQ +G +K + + LG PD I+H+ VMPC+DKKLEA+RE+ D+
Sbjct: 245 VKSPQALMGTMLKTALSRLLGIPPDRIWHLAVMPCFDKKLEASREELT---DAVWAGSGK 301
Query: 185 EGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES--------PLDKMLTNVDDEGHLYGV 236
G + +VD V+T+ EVL L + V+F L +S P + + H V
Sbjct: 302 PGKGVRDVDCVITSKEVLMLAASRGVDFFGLPKSAPVQQPEFPDPTIQRFLFPAQHRKQV 361
Query: 237 A--GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCY 293
G+SGG + G I + RN+D F ++ G+ K A Y
Sbjct: 362 REEGTSGGNLHYILHDVQSRHPGSRI----QMARGRNADVFEYSVVKPSGEAAFKAARYY 417
Query: 294 GFQNLQNIVRKVKMRK----------------------CDYQFVEVMACPSGCLNGGGQI 331
GF+N+QN+VRK+K K DY +VEVMACP GC NGGGQI
Sbjct: 418 GFRNIQNLVRKLKPAKPSRMPGGKPVGSARRPGSKSAGLDYAYVEVMACPGGCTNGGGQI 477
Query: 332 K 332
K
Sbjct: 478 K 478
>gi|383755464|ref|YP_005434367.1| putative iron hydrogenase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381367516|dbj|BAL84344.1| putative iron hydrogenase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 585
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 129/397 (32%), Positives = 207/397 (52%), Gaps = 32/397 (8%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
++EK + L + + K VI+ ++P R +L + FG+ P + ++ T LK LG
Sbjct: 213 IVEKDDTQKVLDALQDNTKHVIVQVAPSVRVALGDAFGLEPGAIVTGQMVTALKLLGFDK 272
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ DLT++E +EF+ R ++ LPM++S PGW+ Y EK S I
Sbjct: 273 VFDTNFGADLTIMEEGHEFLHRLN---------NDGVLPMMTSCSPGWVNYMEKHFPSCI 323
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
++SS KSP GA K + Q+ G +P EI V++MPC KK EAAR +
Sbjct: 324 -DHLSSAKSPMSMFGAIAKTYYAQQAGLKPQEIVTVSIMPCTAKKFEAARPEM------G 376
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+ Y+D VD VLTT E++ LI+ ++ L E+ D L G ++ G
Sbjct: 377 RDGYQD-------VDIVLTTRELIKLIKYVGLSIGKLPENDFDSPLGLASGAGAIF---G 426
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
++GG E R + + GK +E +EF +R D +E + + G+ ++ A+ + +N
Sbjct: 427 ATGGVMEAALRTVYEKVTGKTLE-KVEFMDVRGFDGIKEATIHLPGRD-VRIAVAHTLKN 484
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLA 357
+ I+ +VK Y F+E+MACP GC+ GGGQ K+ I L I + +
Sbjct: 485 ARKIMEQVKKGTSPYDFIEIMACPGGCIGGGGQPIGTTNAIRKQRIAALYEID-RTLPIR 543
Query: 358 DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVK 394
+NP +++LY ++L +P SE+A + +HT YH V K
Sbjct: 544 KSHENPDIQTLYQDFLGEPLSERAHELLHTHYHKVDK 580
>gi|239608619|gb|EEQ85606.1| iron-sulfur cluster assembly associated protein Nar1 [Ajellomyces
dermatitidis ER-3]
gi|327353755|gb|EGE82612.1| iron-sulfur cluster assembly associated protein Nar1 [Ajellomyces
dermatitidis ATCC 18188]
Length = 621
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 125/379 (32%), Positives = 183/379 (48%), Gaps = 81/379 (21%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-----------GVKSIFDTSCSR 66
K I S+SPQ RASLA +GIS + + FL G + DT+ R
Sbjct: 129 KIFIASVSPQVRASLAATYGISERKAGWLIEQFLGGPQGLRAGGAHGNGFAWVVDTNVMR 188
Query: 67 DLTLIEACNEFIARYKQSQESDDERSNSSL--------PMLSSACPGWICYAEKQLGSYI 118
+ L + NE + ES ++ + SL P+LSSACPGWICYAEK ++
Sbjct: 189 QVFLELSVNEVM-------ESLEDSGSPSLEGFPIPKRPVLSSACPGWICYAEK-THPHV 240
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
LP+IS +KSPQ G +K + + L P +I+H+ +MPC+DKKLEA+R++ S
Sbjct: 241 LPHISRLKSPQALTGTLLKTVLSKALNISPAQIWHLAIMPCFDKKLEASRQELTDA--SW 298
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLY---- 234
+ + + +VD V+T+ EVL L + ++ + L PL T + + +L
Sbjct: 299 QSSSSTTHSPVRDVDCVITSREVLMLATSRNISLQNLPLQPLPSSYTPLFPDPYLASFLF 358
Query: 235 ---------GVAGSSGGY---AETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EV 281
AG+SGGY T ++H + ++ + RNSD E +L
Sbjct: 359 PKSGPSTQPSTAGTSGGYLFHILTAYQH-------RNPGSQIQTQRGRNSDVIEYSLTSP 411
Query: 282 EGKTLLKFALCYGFQNLQNIVRKVKMRKC----------------------------DYQ 313
G T++K A YGF+N+QN+VRK+K + DY
Sbjct: 412 SGDTIIKAARYYGFRNIQNLVRKLKPPRASRLPGAKPMIGRRAGSGRATAANNTSATDYA 471
Query: 314 FVEVMACPSGCLNGGGQIK 332
+VEVMACP GC NGGGQI+
Sbjct: 472 YVEVMACPGGCTNGGGQIR 490
>gi|302923118|ref|XP_003053608.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734549|gb|EEU47895.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 577
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 121/373 (32%), Positives = 190/373 (50%), Gaps = 65/373 (17%)
Query: 9 EFLSNINKGKAVIISLSPQSRASLAEHFG--ISPLQVFKKLTTFLKSL-----------G 55
E L N N K + S+SPQ+RA+LA G +S V L+ L+ G
Sbjct: 110 EGLENENA-KLFVASVSPQTRANLAAACGGSVSEKDVGHMLSNLLRGPDGIANGGQWKNG 168
Query: 56 VKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLG 115
+ DT+ +R+ TL+ E + + + + P+L+S+CPGW+CYAEK
Sbjct: 169 FTWVVDTNVAREATLVLGAEEVL------NSTGAGVAAPAKPILASSCPGWVCYAEKTH- 221
Query: 116 SYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL 175
++LP++S VKSPQ +G +K + + L P I+H+ VMPC+DKKLEA+RE+ ++
Sbjct: 222 PHVLPHLSKVKSPQALMGTILKTTLSRTLDIAPSRIWHLAVMPCFDKKLEASREELTEEV 281
Query: 176 DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN-FEALEESPLDKMLTNVDD---EG 231
+ E+ G + +VD V+T+ E+L L + + +N F+ + +P LT D
Sbjct: 282 WAGGES---RGRGVRDVDCVITSKEILMLAESRGLNFFDIPKTAPPSPTLTPFPDPKIHD 338
Query: 232 HLYGV---------AGSSGGYAETVFR-HAAKTLFGKVIEGHLEFKTIRNSDFREVALEV 281
L+ AG+SGG + + AA+T +++ RN D E ++ V
Sbjct: 339 FLFPRRRSRNSPREAGTSGGLLHHILQSRAAQTPGAEIVHARG-----RNVDVAEYSVVV 393
Query: 282 EGKTLLKFALCYGFQNLQNIVRKVK---------------MRK-------CDYQFVEVMA 319
G+ + + A YGF+N+QN+VR++K RK ++ +VEVMA
Sbjct: 394 NGEPVFRAARYYGFRNIQNLVRRLKPARPSRMPGGKPFGSARKPAGKAASLEHSYVEVMA 453
Query: 320 CPSGCLNGGGQIK 332
CP GC NGGGQIK
Sbjct: 454 CPGGCTNGGGQIK 466
>gi|406980693|gb|EKE02262.1| hypothetical protein ACD_20C00406G0007 [uncultured bacterium]
Length = 597
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 132/389 (33%), Positives = 199/389 (51%), Gaps = 39/389 (10%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ +P RA+LAE F I P + V K T LK +G +FDT + DLT++E E
Sbjct: 229 KHVVVQTAPAIRAALAEAFNIPPGERVTGKTVTALKKMGFDGVFDTDFTADLTILEEGTE 288
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R K++ + ++ +P+L+S PGWI Y E +LP +S+ KSPQQ GA
Sbjct: 289 LLTRLKKALVNGEK---VPVPLLTSCSPGWINYIEHYYPD-LLPNLSTCKSPQQMFGALA 344
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + QK+G P+ I V+VMPC KK EA R + + Y+D VD VL
Sbjct: 345 KTYYAQKMGINPESIVTVSVMPCTAKKFEADRPEMC------DSGYKD-------VDYVL 391
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
T E+ +I+ +N L+E D + ++GV +GG E R A + +
Sbjct: 392 TNRELARMIKQSGLNLMELKEGEYDSPMGISTGAAVIFGV---TGGVMEAAIRTAYELVT 448
Query: 257 GKVIE-GHLEFKTIRNSD-FREVALEVEGK---------TLLKFALCYGFQNLQNIVRKV 305
G+ + +LE +R + +E +L +E ++ A+ G N + ++ KV
Sbjct: 449 GREVPFNNLEIHPVRGMEGVKEASLVIENALPEWSFLEGVEVQVAVANGLANAKKVMDKV 508
Query: 306 KMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI-KTLETIYLE--NVMLADPFKN 362
+ + Y F+E+MACP GCL GGGQ P + KE+ K + IY E N+ L N
Sbjct: 509 RSGEVAYHFIEIMACPGGCLGGGGQ----PIPTSKEIREKRAKAIYDEDRNLCLRKSHDN 564
Query: 363 PLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
P V+ LY+E+L P EK+ K +HT Y P
Sbjct: 565 PAVKKLYEEFLGAPLGEKSHKLLHTHYTP 593
>gi|310790892|gb|EFQ26425.1| iron only hydrogenase large subunit domain-containing protein
[Glomerella graminicola M1.001]
Length = 585
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 121/360 (33%), Positives = 176/360 (48%), Gaps = 62/360 (17%)
Query: 21 IISLSPQSRASLAEHFGISPLQ-----VFKKLTTFLKSL--------GVKSIFDTSCSRD 67
+ S+SPQ+RASLA G + + ++L L G + DT+ +R+
Sbjct: 124 VASVSPQTRASLAAAAGKGTTEKEAGHMLERLLGGPDGLASAGKHNNGFTWVLDTNVARE 183
Query: 68 LTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKS 127
L+ +E ++ D S+++ P+L+S+CPGW+CYAEK Y+LP++S VKS
Sbjct: 184 ACLVLGADEVLS------AEDAPASSATKPILTSSCPGWVCYAEKTH-PYVLPHLSRVKS 236
Query: 128 PQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGL 187
PQ +G +K + +KLG P I+H+ VMPC+DKKLEA+RE+ DS G
Sbjct: 237 PQALMGTLLKTTLSKKLGIPPSRIWHLAVMPCFDKKLEASREELT---DSVWAGDGMPGR 293
Query: 188 EIPEVDSVLTTGEVLDLIQLKAVNFEALEESP------------LDKMLTNVDDEGHLYG 235
+ +VD V+T+ EVL L + + NF L S LDK L
Sbjct: 294 GVRDVDCVITSKEVLMLAESRGFNFFDLARSKPSFERVFFPDARLDKFLFPGRIAHRSSQ 353
Query: 236 VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE-VALEVEGKTLLKFALCYG 294
AG+SGG +T+ K ++ RN+D E + G + K A YG
Sbjct: 354 AAGTSGGN----LYFTLQTVVSKHPGSQIQVVRGRNADVVEFIVASPAGDPIFKAARYYG 409
Query: 295 FQNLQNIVRKVKMRK----------------------CDYQFVEVMACPSGCLNGGGQIK 332
F+N+QN+VRK+K + +Y +VEVMACP GC NGGGQIK
Sbjct: 410 FRNIQNLVRKLKPARPSRMPGGKAFGAARRPAGKSAGLEYAYVEVMACPGGCTNGGGQIK 469
>gi|261191831|ref|XP_002622323.1| iron-sulfur cluster assembly associated protein Nar1 [Ajellomyces
dermatitidis SLH14081]
gi|239589639|gb|EEQ72282.1| iron-sulfur cluster assembly associated protein Nar1 [Ajellomyces
dermatitidis SLH14081]
Length = 621
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 125/379 (32%), Positives = 183/379 (48%), Gaps = 81/379 (21%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-----------GVKSIFDTSCSR 66
K I S+SPQ RASLA +GIS + + FL G + DT+ R
Sbjct: 129 KIFIASVSPQVRASLAATYGISERKAGWLIEQFLGGPQGLRAGGAHGNGFAWVVDTNVMR 188
Query: 67 DLTLIEACNEFIARYKQSQESDDERSNSSL--------PMLSSACPGWICYAEKQLGSYI 118
+ L + NE + ES ++ + SL P+LSSACPGWICYAEK ++
Sbjct: 189 QVFLELSVNEVM-------ESLEDSGSPSLEGFPIPKRPVLSSACPGWICYAEK-THPHV 240
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
LP+IS +KSPQ G +K + + L P +I+H+ +MPC+DKKLEA+R++ S
Sbjct: 241 LPHISRLKSPQALTGTLLKTVLSKALNISPAQIWHLAIMPCFDKKLEASRQELTDA--SW 298
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLY---- 234
+ + + +VD V+T+ EVL L + ++ + L PL T + + +L
Sbjct: 299 QSSSSTTHSPVRDVDCVITSREVLMLATSRNISLQNLPLQPLPSSYTPLFPDPYLASFLF 358
Query: 235 ---------GVAGSSGGY---AETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EV 281
AG+SGGY T ++H + ++ + RNSD E +L
Sbjct: 359 PKSGPSTQPSTAGTSGGYLFHILTAYQH-------RNPGSQIQTQRGRNSDVIEYSLTSP 411
Query: 282 EGKTLLKFALCYGFQNLQNIVRKVKMRKC----------------------------DYQ 313
G T++K A YGF+N+QN+VRK+K + DY
Sbjct: 412 SGDTIIKAARYYGFRNIQNLVRKLKPPRASRLPGAKPMIGRRAGSGRATAANNTSATDYA 471
Query: 314 FVEVMACPSGCLNGGGQIK 332
+VEVMACP GC NGGGQI+
Sbjct: 472 YVEVMACPGGCTNGGGQIR 490
>gi|397906372|ref|ZP_10507181.1| Periplasmic [Fe] hydrogenase large subunit [Caloramator australicus
RC3]
gi|397160592|emb|CCJ34518.1| Periplasmic [Fe] hydrogenase large subunit [Caloramator australicus
RC3]
Length = 579
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 183/379 (48%), Gaps = 35/379 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI +P R +L E FG+ P + K+ L+ LG + +FDT + D+T++E E
Sbjct: 227 KFVIAQTAPAIRVALGEEFGLEPGTIVTGKMVAALRRLGFRKVFDTDFAADVTIVEEAKE 286
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
FI R K LP+L+S CP W+ + E Q +L S+ KSP GA
Sbjct: 287 FIERLK---------GKGRLPILTSCCPSWVKFIEHQFPE-LLDIPSTCKSPHMMFGAIA 336
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +K P++I V+VMPC KK E R++F E I VD V+
Sbjct: 337 KTYFAEKFNIPPEKIVVVSVMPCIAKKYEIQRKEF-------------EENGIKNVDYVI 383
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E +I+ ++F L D L ++GV +GG E R A + +
Sbjct: 384 TTREFAKMIREAGIDFTKLPNEDFDDPLGESTGASVIFGV---TGGVIEAALRTAYEWIT 440
Query: 257 GKVIEGHLEFKTIRN--SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
G+ +E +EF +R +E ++++ L K + +G N + ++ ++ K Y
Sbjct: 441 GETLE-KVEFHGVRGLEDGLKEATVKIKDMEL-KIGVAHGLGNARRLLEDIRDGKRFYHA 498
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEW 372
+E+MACP GC++GGGQ P + + L IY E N + +NP V ++Y E+
Sbjct: 499 IEIMACPGGCIDGGGQ--PYHHGNLDIVRARLNAIYEEDRNKPIRKSHENPAVIAMYKEY 556
Query: 373 LEQPGSEKAKKHVHTEYHP 391
+ + G EKA K +HT Y P
Sbjct: 557 MGEIGGEKAHKLLHTHYTP 575
>gi|316931523|ref|YP_004106505.1| hydrogenase, Fe-only [Rhodopseudomonas palustris DX-1]
gi|315599237|gb|ADU41772.1| hydrogenase, Fe-only [Rhodopseudomonas palustris DX-1]
Length = 619
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 122/396 (30%), Positives = 196/396 (49%), Gaps = 40/396 (10%)
Query: 3 EKQSLDEFLSNINKGKAV-IISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIF 60
E+ + LS I V ++ +P R + E FG+ + V ++ + LGV +
Sbjct: 230 ERDETERALSYICDPNVVTVVQFAPAVRVAFGEEFGMPAGTNVEGQIIAACRKLGVDVVL 289
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + D+ ++E E +AR KQ + P +S CP WI +AE +LP
Sbjct: 290 DTNFAADVVIMEEGAELLARLKQGRR----------PTFTSCCPAWINFAEIHYPD-VLP 338
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+SS KSPQQ + K ++ ++LG + I +++MPC KK EA R V D +
Sbjct: 339 LLSSTKSPQQVLSTIAKSYLPEQLGVSAERIRVISIMPCIAKKDEAVRPQMVH--DGR-- 394
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK-MLTNVDDEGHLYGVAGS 239
PE D VLTT E L++ + ++ + L S D+ L+ G ++G +
Sbjct: 395 ---------PETDLVLTTREFARLLRREGIDLKDLPSSQFDRPFLSAYSGAGAIFG---T 442
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKT-LLKFALCYGFQN 297
+GG E R + G+ ++ +E +R + RE +++ G +K A+ +G +
Sbjct: 443 TGGVMEAAVRTIYALVNGRELD-RIELMQLRGFEGLREAVVDLGGPVGEVKVAMVHGLGD 501
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLA 357
+ +V V + +Y F+EVMACP GC++GGG ++ K P L K ETIY NV A
Sbjct: 502 TRRLVESVLSGQANYDFIEVMACPGGCVDGGGSLRSKKAYLPLAL-KRRETIY--NVDRA 558
Query: 358 DPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ NP V++LY E L+ P SE A + +HT Y
Sbjct: 559 AKVRQSHNNPQVQALYRELLQAPNSEIAHRLLHTHY 594
>gi|297617703|ref|YP_003702862.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680]
gi|297145540|gb|ADI02297.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680]
Length = 401
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 165/318 (51%), Gaps = 25/318 (7%)
Query: 20 VIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
V++ +P R +L E FG++P V K+ L+ LG ++DT + DLT++E E I
Sbjct: 95 VVVQEAPSVRVALGEEFGMAPGTNVKGKMYAALRKLGFDRVYDTEFAADLTIMEEGTELI 154
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R + LP +S CP W+ YAE +LP+ISS KSPQQ GA K
Sbjct: 155 HRIFKHLGIPGYEHVGPLPQFTSCCPAWVKYAEDNY-PEVLPHISSAKSPQQMFGAVAKT 213
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ QKL P ++ V+VMPC KK E R + + Y+D VD+V+TT
Sbjct: 214 YAAQKLNVDPANMFVVSVMPCTAKKYECNRPEMI------ASGYKD-------VDAVITT 260
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ +I+ ++F +L + DK + ++ G++GG E R A + L G+
Sbjct: 261 RELAQMIKEAGIDFASLPDEKADKFVGLSTGAATIF---GATGGVMEAALRTAYEVLSGQ 317
Query: 259 VIEGHLEFKTIRN-SDFREVALEVE----GKTL-LKFALCYGFQNLQNIVRKVKMRKCDY 312
+E ++FK +R RE ++E+ GKTL +K + G +++ +++ V + Y
Sbjct: 318 SLE-QIDFKNVRGLRPIREASVEIPIKDLGKTLPVKVCVVSGTKHVDGVIKDVLKGRSPY 376
Query: 313 QFVEVMACPSGCLNGGGQ 330
F+EVM CP GC+NGGGQ
Sbjct: 377 HFIEVMNCPGGCVNGGGQ 394
>gi|410658229|ref|YP_006910600.1| putative iron-only hydrogenase, catalytic subunit HymC
[Dehalobacter sp. DCA]
gi|410661215|ref|YP_006913586.1| putative iron-only hydrogenase, catalytic subunit HymC
[Dehalobacter sp. CF]
gi|409020584|gb|AFV02615.1| putative iron-only hydrogenase, catalytic subunit HymC
[Dehalobacter sp. DCA]
gi|409023571|gb|AFV05601.1| putative iron-only hydrogenase, catalytic subunit HymC
[Dehalobacter sp. CF]
Length = 594
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 193/379 (50%), Gaps = 34/379 (8%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N K VI+ +P R ++ E F + P + +L T LK +G ++FDT DLT++E
Sbjct: 240 NPDKYVIVQTAPAIRVAIGEIFDMEPGTIATGQLVTALKRIGFNAVFDTDFGADLTIMEE 299
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+E I R + +N +LP+L+S CP W+ + E Q +L S+ KSP G
Sbjct: 300 ASELIYRLQ---------NNKTLPILTSCCPAWVKFIEHQFPE-LLEVPSTCKSPHIMFG 349
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+K + +K G PD I V+VMPC KK EA R + +DE VD
Sbjct: 350 TIVKTYYAEKNGIDPDNIVVVSVMPCIAKKAEAKRPELT----------KDEH---NNVD 396
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E+ +I+ ++F L S DK L ++G +SGG E R A +
Sbjct: 397 IVVTTRELGLMIKEAGLDFSNLPSSEYDKSLGETTGASVIFG---TSGGVIEAALRTAYE 453
Query: 254 TLFGKVIEGHLEFKTIR-NSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
L G+ ++ +EF+ +R + R+ +++ G +L+ + G N + ++ +++ K Y
Sbjct: 454 WLTGEELQ-KVEFEQLRGDGGLRKATVQI-GDKMLRIGIASGLGNARTLLEEIRDGKNQY 511
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYD 370
+ +E+MACP GC+ GGGQ P + + + K E IY E N + +N ++ LY
Sbjct: 512 EAIEIMACPGGCVAGGGQ--PYHHGNFEIVRKRQEAIYQEDKNKKIRKSHENSEIQKLYQ 569
Query: 371 EWLEQPGSEKAKKHVHTEY 389
E+L QP S+ A + +HT +
Sbjct: 570 EYLGQPFSDTAHRLLHTHF 588
>gi|220931477|ref|YP_002508385.1| NADH dehydrogenase (ubiquinone) 75 kDa subunit [Halothermothrix
orenii H 168]
gi|219992787|gb|ACL69390.1| NADH dehydrogenase (ubiquinone) 75 kDa subunit [Halothermothrix
orenii H 168]
Length = 578
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 132/386 (34%), Positives = 207/386 (53%), Gaps = 43/386 (11%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N K V++ +P R S+ E FG+ P V KL L+ LG +FDT+ + DLT++E
Sbjct: 220 NPDKHVVVQTAPAVRVSIGEVFGMKPGSLVTGKLMAGLRRLGFDKVFDTNFTADLTIMEE 279
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+E I R K +N LP+++S PGWI + E SY L +ISS KSPQQ G
Sbjct: 280 GHELIERLK---------NNERLPLITSCSPGWIKFIEHFYPSY-LEHISSCKSPQQMFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + + G P++++ V+VMPC KK E R +DS Y+D VD
Sbjct: 330 ALAKTYYPENNGIDPEDVFVVSVMPCTAKKFEITRPG----MDSS--GYQD-------VD 376
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
VLTT E+ + + ++F L + DK L G ++ G++GG E R A +
Sbjct: 377 VVLTTRELAKMFKQAGIDFVNLPDEEYDKPLGISTGAGTIF---GTTGGVMEAALRTAYE 433
Query: 254 TLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
L G+ + G LEF+ +R + +E +E+ G+ +K A+ +G N +++ + DY
Sbjct: 434 VLTGEELPG-LEFEDVRGLEGIKECEIEINGQK-IKVAVAHGLSNAHKVLQNID----DY 487
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIK-TLETIYLENV--MLADPFKNPLVRSLY 369
F+E+MACP GC+ GGGQ P + +E I+ + +Y ++ + +NP+V+ LY
Sbjct: 488 HFIEIMACPGGCVGGGGQ----PYPTNEETIRLRAQGLYRDDKEHQIRKSHENPVVKKLY 543
Query: 370 DEWLEQPGSEKAKKHVHTEYHPVVKS 395
+E+L +P S K+ + +HT Y VV+S
Sbjct: 544 EEFLGKPLSHKSHELLHTGY--VVRS 567
>gi|159470457|ref|XP_001693376.1| iron hydrogenase [Chlamydomonas reinhardtii]
gi|9837540|gb|AAG00591.1|AF289201_1 Fe-hydrogenase precursor [Chlamydomonas reinhardtii]
gi|16945126|emb|CAC80065.1| Fe-hydrogenase [Chlamydomonas reinhardtii]
gi|18026270|gb|AAL23572.1| iron-hydrogenase HydA1 [Chlamydomonas reinhardtii]
gi|40736851|emb|CAC83731.1| Fe-hydrogenase [Chlamydomonas reinhardtii]
gi|158277634|gb|EDP03402.1| iron hydrogenase [Chlamydomonas reinhardtii]
Length = 497
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 122/423 (28%), Positives = 194/423 (45%), Gaps = 73/423 (17%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V + ++P R ++AE G++P K+L L+ LG +FDT DLT++E +E
Sbjct: 85 KHVCVQVAPAVRVAIAETLGLAPGATTPKQLAEGLRRLGFDEVFDTLFGADLTIMEEGSE 144
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY--ILPYISSVKSPQQTIGA 134
+ R + E+ S+ LPM +S CPGWI EK SY ++PY+SS KSPQ + A
Sbjct: 145 LLHRLTEHLEAHPH-SDEPLPMFTSCCPGWIAMLEK---SYPDLIPYVSSCKSPQMMLAA 200
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
+K ++ +K G P ++ V++MPC K+ EA R+ F D T R ++D
Sbjct: 201 MVKSYLAEKKGIAPKDMVMVSIMPCTRKQSEADRDWFCVDADP---TLR-------QLDH 250
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V+TT E+ ++ + + +N L E D + G L+ G++GG E R A +
Sbjct: 251 VITTVELGNIFKERGINLAELPEGEWDNPMGVGSGAGVLF---GTTGGVMEAALRTAYEL 307
Query: 255 LFGKVIEGHLEFKTIRNSD----------------FREV--------------------- 277
G + L +R D F E+
Sbjct: 308 FTGTPLP-RLSLSEVRGMDGIKETNITMVPAPGSKFEELLKHRAAARAEAAAHGTPGPLA 366
Query: 278 --------ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGG 329
+ + G L+ A+ G N + ++ K++ + Y FVE+MACP+GC+ GGG
Sbjct: 367 WDGGAGFTSEDGRGGITLRVAVANGLGNAKKLITKMQAGEAKYDFVEIMACPAGCVGGGG 426
Query: 330 QIKPKPGQSPKELIKTLETIYL---ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 386
Q P + K + + + E L +NP +R LYD +L +P KA + +H
Sbjct: 427 Q----PRSTDKAITQKRQAALYNLDEKSTLRRSHENPSIRELYDTYLGEPLGHKAHELLH 482
Query: 387 TEY 389
T Y
Sbjct: 483 THY 485
>gi|251779532|ref|ZP_04822452.1| hydrogenase, Fe only [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243083847|gb|EES49737.1| hydrogenase, Fe only [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 565
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 188/380 (49%), Gaps = 37/380 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N + V+ ++P R +L E FG+ P + V K+ ++ LG I+DTS + D+T+IE
Sbjct: 219 NPKQRVVAQVAPAVRVALGEEFGVKPGENVMDKIVAAMRKLGFDEIYDTSLTADMTIIEE 278
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
NEF+ Q ES D++ LP+ +S CP W+ Y E + ++ Y+S+ KSP Q G
Sbjct: 279 SNEFL----QKLESGDDK----LPLFTSCCPAWVRYVETK-HPELMKYVSTCKSPMQMFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+ IK + + E V +MPC KK EAARE+F+ I ++D
Sbjct: 330 SVIKEYFKENDSLEEKETISVAIMPCTAKKAEAAREEFIRN-------------GIKDID 376
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E+ +I + F+ +E D + G ++GV +GG E V R +
Sbjct: 377 YVITTTELCKMINEAGLQFDKIEPESSDMPFSLYSGAGVIFGV---TGGVTEAVIRGVVE 433
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
K ++ +EF IR D ++ G+ L+ + G N +N++ K++ + +
Sbjct: 434 DKSSKALK-EIEFIGIRGMDGVKICEVPFGEKNLRIGVVSGLANAENLIDKIQSGEEHFD 492
Query: 314 FVEVMACPSGCLNGGGQ---IKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYD 370
FVEVMACP GC+ G GQ +K + K L K + ++ +NP++ SLY+
Sbjct: 493 FVEVMACPGGCIAGAGQPFSLKEGNKERAKGLYKVDKVTQIKRSQ-----ENPVLISLYN 547
Query: 371 EWLEQPGSEKAKKHVHTEYH 390
L++ E HVH E+
Sbjct: 548 GLLKERSKELL--HVHYEHE 565
>gi|192288570|ref|YP_001989175.1| hydrogenase, Fe-only [Rhodopseudomonas palustris TIE-1]
gi|192282319|gb|ACE98699.1| hydrogenase, Fe-only [Rhodopseudomonas palustris TIE-1]
Length = 619
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 123/396 (31%), Positives = 194/396 (48%), Gaps = 40/396 (10%)
Query: 3 EKQSLDEFLSNINKGKAV-IISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIF 60
E+ D L I + V ++ +P R + E FG+ + V ++ + LGV +
Sbjct: 230 ERDETDRALDYICDPEVVTVVQFAPAVRVAFGEEFGLPAGTNVEGQIIAACRKLGVDVVL 289
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + D+ ++E E +AR KQ + P +S CP WI +AE +LP
Sbjct: 290 DTNFAADVVIMEEGAELLARLKQGRR----------PTFTSCCPAWINFAEIHYPD-VLP 338
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+SS KSPQQ + K ++ +LG + I +++MPC KK EA R V D Q
Sbjct: 339 LLSSTKSPQQVLSTIAKSYLPAQLGVPAERIRVISIMPCIAKKDEAVRPQMVH--DGQ-- 394
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK-MLTNVDDEGHLYGVAGS 239
PE D VLTT E L++ + ++ + L S D+ L+ G ++G +
Sbjct: 395 ---------PETDLVLTTREFARLLRREGIDLKDLPSSQFDRPFLSAYSGAGAIFG---T 442
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKT-LLKFALCYGFQN 297
+GG E R + G+ ++ +E +R + RE +++ G +K A+ +G +
Sbjct: 443 TGGVMEAAVRTIYALVNGRELD-RIELTQLRGFEGLREATVDLGGPVGEVKVAMVHGLGD 501
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLA 357
+ +V V + +Y F+EVMACP GC++GGG ++ K P L K ETIY NV A
Sbjct: 502 TRRLVESVLSGEANYDFIEVMACPGGCVDGGGSLRSKKAYLPLAL-KRRETIY--NVDRA 558
Query: 358 DPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ NP V+ LY E L+ P SE A + +HT Y
Sbjct: 559 AKVRQSHNNPQVQVLYRELLQAPNSEIAHRLLHTHY 594
>gi|121708183|ref|XP_001272053.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Aspergillus clavatus NRRL 1]
gi|259511263|sp|A1CIC2.1|NAR1_ASPCL RecName: Full=Cytosolic Fe-S cluster assembly factor nar1; AltName:
Full=Nuclear architecture-related protein 1
gi|119400201|gb|EAW10627.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Aspergillus clavatus NRRL 1]
Length = 597
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 123/377 (32%), Positives = 180/377 (47%), Gaps = 72/377 (19%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLK-SLGVKS----------IFDTS 63
++ + + S+SPQ RASLA +GIS + + FL S G+++ + DT+
Sbjct: 113 SESRVFVASVSPQVRASLATTYGISEREAQCMIDQFLSGSQGLRAGGKFHNGFAWVVDTN 172
Query: 64 CSRDLTLIEACNEFIARYKQSQESDDERSN-SSLPMLSSACPGWICYAEKQLGSYILPYI 122
R+ L +E S S D + P+LSSACPGWICYAEK +ILP++
Sbjct: 173 TMREAVLALTADEV----ANSLTSIDPLNTLPKRPILSSACPGWICYAEKT-HPFILPHL 227
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ-EET 181
S +KSPQ G +K + + LG P I+H+ +MPC+DKKLEA+RE+ DS T
Sbjct: 228 SRLKSPQALTGTLLKSVLSKALGISPTRIWHLAIMPCFDKKLEASREELT---DSAWGPT 284
Query: 182 YRDEGLEIPEVDSVLTTGEVLDLIQLKAVN-------------FEALEESPLDKMLTNVD 228
+ + +VD V+T+ E+L L + ++ + + LD L +
Sbjct: 285 PSEPHTPVRDVDCVITSRELLTLAASRGISLPRLPLKPLPRSYYSPFPDRSLDSFLFSKR 344
Query: 229 DEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE-VALEVEGKTLL 287
G +G+SGGY H T K + + RN+D E V + G+ LL
Sbjct: 345 SSGQT-AASGTSGGY----LHHVLTTFQAKNPGSQIVTQRGRNADVVEYVLMSPGGEPLL 399
Query: 288 KFALCYGFQNLQNIVRKVKMRKC--------------------------------DYQFV 315
K A YGF+N+QN+VRK+K + DY +V
Sbjct: 400 KAARYYGFRNIQNLVRKLKPARASRLPGARQSATSAGGSRRQLASRNAASAGSGTDYAYV 459
Query: 316 EVMACPSGCLNGGGQIK 332
EVMACP GC NGGGQ++
Sbjct: 460 EVMACPGGCTNGGGQVR 476
>gi|295321929|pdb|3LX4|A Chain A, Stepwise [fefe]-Hydrogenase H-Cluster Assembly Revealed In
The Structure Of Hyda(Deltaefg)
gi|295321930|pdb|3LX4|B Chain B, Stepwise [fefe]-Hydrogenase H-Cluster Assembly Revealed In
The Structure Of Hyda(Deltaefg)
Length = 457
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 122/423 (28%), Positives = 194/423 (45%), Gaps = 73/423 (17%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V + ++P R ++AE G++P K+L L+ LG +FDT DLT++E +E
Sbjct: 45 KHVCVQVAPAVRVAIAETLGLAPGATTPKQLAEGLRRLGFDEVFDTLFGADLTIMEEGSE 104
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY--ILPYISSVKSPQQTIGA 134
+ R + E+ S+ LPM +S CPGWI EK SY ++PY+SS KSPQ + A
Sbjct: 105 LLHRLTEHLEAH-PHSDEPLPMFTSCCPGWIAMLEK---SYPDLIPYVSSCKSPQMMLAA 160
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
+K ++ +K G P ++ V++MPC K+ EA R+ F D T R ++D
Sbjct: 161 MVKSYLAEKKGIAPKDMVMVSIMPCTRKQSEADRDWFCVDADP---TLR-------QLDH 210
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V+TT E+ ++ + + +N L E D + G L+ G++GG E R A +
Sbjct: 211 VITTVELGNIFKERGINLAELPEGEWDNPMGVGSGAGVLF---GTTGGVMEAALRTAYEL 267
Query: 255 LFGKVIEGHLEFKTIRNSD----------------FREV--------------------- 277
G + L +R D F E+
Sbjct: 268 FTGTPLP-RLSLSEVRGMDGIKETNITMVPAPGSKFEELLKHRAAARAEAAAHGTPGPLA 326
Query: 278 --------ALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGG 329
+ + G L+ A+ G N + ++ K++ + Y FVE+MACP+GC+ GGG
Sbjct: 327 WDGGAGFTSEDGRGGITLRVAVANGLGNAKKLITKMQAGEAKYDFVEIMACPAGCVGGGG 386
Query: 330 QIKPKPGQSPKELIKTLETIYL---ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVH 386
Q P + K + + + E L +NP +R LYD +L +P KA + +H
Sbjct: 387 Q----PRSTDKAITQKRQAALYNLDEKSTLRRSHENPSIRELYDTYLGEPLGHKAHELLH 442
Query: 387 TEY 389
T Y
Sbjct: 443 THY 445
>gi|39933211|ref|NP_945487.1| hydrogenase gamma-fused hydrogenase large and small subunit
[Rhodopseudomonas palustris CGA009]
gi|39652836|emb|CAE25578.1| hydrogenase gamma-fused hydrogenase large and small subunit
[Rhodopseudomonas palustris CGA009]
Length = 619
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 123/396 (31%), Positives = 193/396 (48%), Gaps = 40/396 (10%)
Query: 3 EKQSLDEFLSNINKGKAV-IISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIF 60
E+ D L I V ++ +P R + E FG+ + V ++ + LGV +
Sbjct: 230 ERDETDRALDYICDPNVVTVVQFAPAVRVAFGEEFGLPAGTNVEGQIIAACRKLGVDVVL 289
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + D+ ++E E +AR KQ + P +S CP WI +AE +LP
Sbjct: 290 DTNFAADVVIMEEGAELLARLKQGRR----------PTFTSCCPAWINFAEIHYPD-VLP 338
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+SS KSPQQ + K ++ +LG + I +++MPC KK EA R V D Q
Sbjct: 339 LLSSTKSPQQVLSTIAKSYLPAQLGVPAERIRVISIMPCIAKKDEAVRPQMVH--DGQ-- 394
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK-MLTNVDDEGHLYGVAGS 239
PE D VLTT E L++ + ++ + L S D+ L+ G ++G +
Sbjct: 395 ---------PETDLVLTTREFARLLRREGIDLKDLPSSQFDRPFLSAYSGAGAIFG---T 442
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKT-LLKFALCYGFQN 297
+GG E R + G+ +E +E +R + RE +++ +K A+ +G +
Sbjct: 443 TGGVMEAAVRTIYALVNGRELE-RIELTQLRGFEGLREATVDLGAPVGEVKVAMVHGLGD 501
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLA 357
+ +V V + +Y F+EVMACP GC++GGG ++ K P L K ETIY NV A
Sbjct: 502 TRKLVESVLSGEANYDFIEVMACPGGCVDGGGSLRSKKAYLPLAL-KRRETIY--NVDRA 558
Query: 358 DPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ NP V++LY E L+ P SE A + +HT Y
Sbjct: 559 AKVRQSHNNPQVQALYRELLQAPNSEIAHRLLHTHY 594
>gi|13311187|emb|CAC34419.1| Fe-hydrogenase [Acutodesmus obliquus]
Length = 449
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 199/406 (49%), Gaps = 41/406 (10%)
Query: 4 KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDT 62
+Q+LDE + K +I ++P R ++AE G++P V ++ T L+ LG +FDT
Sbjct: 56 QQTLDELAKPKEQRKVMIAQIAPAVRVAIAETMGLNPGDVTVGQMVTGLRMLGFDYVFDT 115
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
DLT++E E R + E + LPM +S CPGW+ EK ++PY+
Sbjct: 116 LFGADLTIMEEGTELRHRLQDHLEQHPNKE-EPLPMFTSCCPGWVAMVEKS-NPELIPYL 173
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
SS KSPQ +GA IK++ + G +P++I +V+VMPC K+ EA RE F
Sbjct: 174 SSCKSPQMMLGAVIKNYFAAEAGAKPEDICNVSVMPCVRKQGEADREWF----------- 222
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 242
G VD V+TT E+ + + + L+ESP D + G L+ G++GG
Sbjct: 223 NTTGAGGANVDHVMTTAELGKIFVERGIKLNDLQESPFDNPVGEGSGGGVLF---GTTGG 279
Query: 243 YAETVFRHAAKTLFGKVIEGHLEFKTIRN----------------SDFREVALEVEGKTL 286
E R + + K ++ + F+ +R S F+ A
Sbjct: 280 VMEAALRTVYEVVTQKPLD-RIVFEDVRGLEGIKESTLHLTPGPTSPFKAFAGADGTGIT 338
Query: 287 LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL 346
L A+ G N + +++++ + Y F+EVMACP GC+ GGGQ P + K++++
Sbjct: 339 LNIAVANGLGNAKKLIKQLAAGESKYDFIEVMACPGGCIGGGGQ----PRSADKQILQKR 394
Query: 347 ETIYL---ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ E ++ +NPL+ +LY+++L +P KA + +HT Y
Sbjct: 395 QAAMYDLDERAVIRRSHENPLIGALYEKFLGEPNGHKAHELLHTHY 440
>gi|187932399|ref|YP_001886496.1| iron hydrogenase 1 [Clostridium botulinum B str. Eklund 17B]
gi|187720552|gb|ACD21773.1| iron hydrogenase 1 [Clostridium botulinum B str. Eklund 17B]
Length = 565
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 188/380 (49%), Gaps = 37/380 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N + V+ ++P R +L E FGI P + V K+ ++ LG I+DTS + D+T+IE
Sbjct: 219 NPKQRVVAQVAPAVRVALGEEFGIKPGENVMDKIVAAMRKLGFDEIYDTSLTADMTIIEE 278
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
NEF+ Q ES D++ LP+ +S CP W+ Y E + ++ Y+S+ KSP Q G
Sbjct: 279 SNEFL----QKLESGDDK----LPLFTSCCPAWVRYVETK-HPELMKYVSTCKSPMQMFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+ IK + + E V +MPC KK EAARE+F+ I ++D
Sbjct: 330 SVIKEYFKENDSLEEKETISVAIMPCTAKKAEAAREEFITN-------------GIKDID 376
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E+ +I + F+ +E D + G ++GV +GG E V R +
Sbjct: 377 YVITTTELCKMINEAGLQFDKIEPESSDMPFSLYSGAGVIFGV---TGGVTEAVIRGVVE 433
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
K ++ +EF +R D ++ G+ L+ + G N +N++ K++ + +
Sbjct: 434 DKSSKALK-EIEFIGVRGMDGVKICEVPFGEKNLRIGVVSGLANAENLIDKIQSGEEHFD 492
Query: 314 FVEVMACPSGCLNGGGQ---IKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYD 370
FVEVMACP GC+ G GQ +K + K L K + ++ +NP++ SLY+
Sbjct: 493 FVEVMACPGGCVAGAGQPFSLKEGNKERAKGLYKVDKVTQIKRSQ-----ENPVLISLYN 547
Query: 371 EWLEQPGSEKAKKHVHTEYH 390
L++ E HVH E+
Sbjct: 548 GLLKERSKELL--HVHYEHE 565
>gi|390453547|ref|ZP_10239075.1| NADH:ubiquinone oxidoreductase subunit [Paenibacillus peoriae KCTC
3763]
Length = 446
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 189/391 (48%), Gaps = 41/391 (10%)
Query: 13 NINK--------GKAVIISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDT 62
N+NK G+ I+ +P R SLAE FG+ P K+ L+ LG ++DT
Sbjct: 60 NLNKVTDMMTKPGQLRIVQCAPSIRVSLAEEFGM-PFGTLTPGKMAAALRRLGFDRVYDT 118
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
+ D+T++E E I R + LPM +S CP W+ +AE + +L ++
Sbjct: 119 NFGADVTIMEEGTELIRRVTE---------GGPLPMFTSCCPAWVRFAEIEYPD-LLDHL 168
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
SS KSP Q +GA +K + Q +P IY V +MPC K+ E R + + + Y
Sbjct: 169 SSCKSPMQILGALVKTYGAQLDEVKPANIYSVAIMPCTCKQFECDRPEM------ESDGY 222
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 242
RD VD VLTT E+ I+ + ++F L + D L G ++GV +GG
Sbjct: 223 RD-------VDEVLTTRELAYWIKQRGIDFMNLPDEEFDSPLGQYSGAGTIFGV---TGG 272
Query: 243 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIV 302
E R + L + + L+ +R + VA G+ LK A+ G Q+ ++
Sbjct: 273 VMEAAIRTGYELLTNEKLP-KLQLDFVRGEEGIRVAEVQVGELQLKVAVVAGLQHAYQLL 331
Query: 303 RKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE-TIYLENV--MLADP 359
+V+ +CDY F+EVM CP+GC++GGGQ K + E + + +IY + +
Sbjct: 332 DRVQAGECDYHFIEVMGCPAGCISGGGQPKLMLEKQKIEAYRARKSSIYGHDAASQVRKS 391
Query: 360 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
+NP + LYDE+L +P + +HT +
Sbjct: 392 HENPFIIKLYDEFLGEPLGHVSHHLLHTTFQ 422
>gi|451819272|ref|YP_007455473.1| [FeFe] hydrogenase, group A [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451785251|gb|AGF56219.1| [FeFe] hydrogenase, group A [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 457
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 125/396 (31%), Positives = 206/396 (52%), Gaps = 26/396 (6%)
Query: 1 MLEKQSLDEFLSNIN-KGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
++E E + IN K K VI++ SP R SL E FG+ + K+ L+ LGV
Sbjct: 73 IIETYEFREVMEAINDKDKIVIVNTSPSVRVSLGEEFGMEDGSFVQGKMVALLRKLGVNY 132
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+ DT+ DLT++E +E I R K+ N +LP +S CP W+ +AE I
Sbjct: 133 VLDTNFGADLTIMEEASELIERVKK---------NKNLPQFTSCCPAWVKFAETYYPE-I 182
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+P IS+ KSP G T+K + + + P +I +V + PC KK E RE+
Sbjct: 183 IPNISTSKSPIGMQGPTVKSYFAESMDIDPKKIVNVALTPCTAKKFEIRREEM-----KD 237
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
Y D ++ ++D V+TT E+ + K ++F +LE+S D+++ G ++G
Sbjct: 238 AGNYLDID-DMRDMDYVITTRELALWAKEKGIDFNSLEDSEFDRVMGEASGAGVIFG--- 293
Query: 239 SSGGYAETVFRHAAKTLFG-KVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQ 296
++GG E R A + + KV + + K +R + +E +L++ G L A+ YG
Sbjct: 294 NTGGVMEAALRTAYEFITKEKVPDTLYDLKPVRGMEEMKEASLDI-GDITLNVAVIYGTD 352
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--V 354
N++ ++ K+K Y F+EVM CP GC+ GGGQ K + + + K + ++Y ++ +
Sbjct: 353 NVRKMMDKLKTSDKQYHFIEVMTCPGGCIGGGGQAKHRIDKIKEANEKRIMSLYDKDNKM 412
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
L KNP + LY+E+ +P SE A+K +HT Y+
Sbjct: 413 KLRLSHKNPEIEMLYNEFYGEPLSELAEKMLHTSYY 448
>gi|436842483|ref|YP_007326861.1| Periplasmic [Fe] hydrogenase large subunit [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
gi|432171389|emb|CCO24762.1| Periplasmic [Fe] hydrogenase large subunit [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
Length = 459
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 196/387 (50%), Gaps = 35/387 (9%)
Query: 9 EFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRD 67
E + + K ++ +P R ++ E FG+ + K+ L+ LG ++DT+ + D
Sbjct: 97 EVMKELRSDKLSLVQCAPAVRTAIGEDFGMPAGSLTPGKMAAALRRLGFDRVYDTNFAAD 156
Query: 68 LTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKS 127
LT++E NE ++R + +LPM +S CP W+ + E +L ++SS KS
Sbjct: 157 LTIMEEGNELLSRISNGE---------TLPMFTSCCPAWVRFMELNYPD-LLGHLSSCKS 206
Query: 128 PQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGL 187
PQQ GA K + +P+EI+ V+VMPC KK E++R + ++ GL
Sbjct: 207 PQQMSGALFKTYGADIDNRKPEEIFSVSVMPCTCKKYESSRPEM-----------KNNGL 255
Query: 188 EIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETV 247
+VD+V+TT E+ +I+ ++F L D+ L G+++GV +GG E
Sbjct: 256 R--DVDAVITTRELGYMIKEAGIDFTTLPAEDFDRPLGTYTGAGNIFGV---TGGVMEAA 310
Query: 248 FRHAAKTLFGK-VIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKV 305
R A + + GK V E L F +R + R ++++ G T + A+ G N ++ KV
Sbjct: 311 LRTACELVTGKPVPETDLIF--VRGEAGMRTASMDMNGTTF-RVAVVAGLTNAIALLEKV 367
Query: 306 KMRKCDYQFVEVMACPSGCLNGGGQIK---PKPGQSPKELIKTLETIYLENVMLADPFKN 362
+ K + FVEVM CPSGC++GGGQ K P ++ K + +N+ + +N
Sbjct: 368 RTGKAEVDFVEVMCCPSGCISGGGQPKVLLPADRENVYRCRKQSMYSHDQNIKIRKSHEN 427
Query: 363 PLVRSLYDEWLEQPGSEKAKKHVHTEY 389
P V+ +Y ++L +P + K +HT Y
Sbjct: 428 PDVQKVYADFLGEPLGHTSHKLLHTSY 454
>gi|51244331|ref|YP_064215.1| Fe-center hydrogenase, large subunit [Desulfotalea psychrophila
LSv54]
gi|50875368|emb|CAG35208.1| probable Fe-center hydrogenase, large subunit [Desulfotalea
psychrophila LSv54]
Length = 471
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 189/377 (50%), Gaps = 35/377 (9%)
Query: 19 AVIISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
+ + +P R +L E FG+ P KL L +LG ++DT+ + DLT++E E
Sbjct: 118 STFVQCAPAVRVALGEEFGM-PYGSLTPGKLAAALHALGFTKVYDTNFAADLTIMEEGAE 176
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
IAR LPM +S CPGW+ + E Q +L ++SS KSPQQ G
Sbjct: 177 LIARIG---------GQGKLPMFTSCCPGWVKFVEDQYPD-LLEHLSSCKSPQQMAGTLF 226
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + Q+ G P++I+ + VMPC KK E R + YRD VD V+
Sbjct: 227 KTYGAQEAGIAPEKIFSLAVMPCTCKKFECERPEMA------ASGYRD-------VDLVI 273
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ L++ ++F AL ++ D L G+++G ++GG E R A + L
Sbjct: 274 TTRELAQLLKHVGIDFLALADAEFDNPLGCYSGAGNIFG---TTGGVMEAALRSACEVLT 330
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
GK + +E +R + R ++ EG L + A+ G ++ ++ +V+ + D+QF+
Sbjct: 331 GKPLP-SVELDYVRGGEGVRFATVQHEGVEL-RVAIAAGLADIAPLLEQVRAGEADFQFM 388
Query: 316 EVMACPSGCLNGGGQIKP-KPGQSPKELIKTLETIYLENVMLA--DPFKNPLVRSLYDEW 372
EVM CP GC++GGGQ K P Q + +Y + L +NP ++ LY+++
Sbjct: 389 EVMCCPMGCVSGGGQPKTLLPSQVLEAHAGRRAGLYSHDKALPVRKSHENPEIKKLYEKF 448
Query: 373 LEQPGSEKAKKHVHTEY 389
L +P +A + +HT++
Sbjct: 449 LGEPLGHQAHELLHTDH 465
>gi|358338161|dbj|GAA31803.2| cytosolic Fe-S cluster assembly factor NARFL [Clonorchis sinensis]
Length = 498
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 129/424 (30%), Positives = 198/424 (46%), Gaps = 121/424 (28%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKK---------------------LTTFLKSLGV 56
+ +++S+SPQS SLA + + +++ L +++GV
Sbjct: 26 RTIVVSISPQSIVSLASYLNKNDAGRYEEWKAKLPVDLECLPEAECIERFLVQQFRAMGV 85
Query: 57 KSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGS 116
+ +T+ RD+ L E+ EFI R+K +D E + + LP+ ACPGWICYAEK
Sbjct: 86 SLVLNTTWFRDIALSESAAEFIRRFK---AADAEPTGAHLPVFCGACPGWICYAEKTHSG 142
Query: 117 ---------------YILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 161
ILP++S V+SPQQ G+ +K Q+ R +YHVT+MPC+D
Sbjct: 143 GETSVETTKFVNQSFSILPHLSVVRSPQQIAGSLLK----QRSESRQSSLYHVTIMPCFD 198
Query: 162 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE--ESP 219
KKLEA+R +F S D+ +P+VD VL T E+L++ L + E L + P
Sbjct: 199 KKLEASRVEFASPAHSAR---HDDPEMVPDVDLVLATNELLEI--LDTIGDEGLRSMKGP 253
Query: 220 LDK-------MLTNVDDEGH------------LYGVAGS-SGGYAETVFRHAAKTLFG-- 257
+D + +V++ H +Y AGS SGGYA +VF AA+ LF
Sbjct: 254 VDVDCDLWQILKGSVNEAVHSHMPEPTPLRTPMYRHAGSGSGGYAVSVFAQAAEELFSIH 313
Query: 258 -----KVIEGHLEFKTIRNSDFREVALEVEGK---------------------------- 284
+ + +T++N D +E+ L +
Sbjct: 314 LPAEDPTSDDRVLTRTLQNQDLQELLLFASSQDCATAKHMLSNLPSSRTPYRSLKSVKPP 373
Query: 285 -TLLKFALCYGFQNLQNIVRKV----KMRKC-----------DYQFVEVMACPSGCLNGG 328
LL FA+ GF+N+QN+V+ + K R+C + +VEVMACP GC+NGG
Sbjct: 374 ACLLAFAVANGFRNIQNLVQSLKNVYKARQCMENQPTRSTCYPFDYVEVMACPGGCINGG 433
Query: 329 GQIK 332
GQ+K
Sbjct: 434 GQLK 437
>gi|357039139|ref|ZP_09100934.1| hydrogenase, Fe-only [Desulfotomaculum gibsoniae DSM 7213]
gi|355358603|gb|EHG06369.1| hydrogenase, Fe-only [Desulfotomaculum gibsoniae DSM 7213]
Length = 572
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 118/376 (31%), Positives = 187/376 (49%), Gaps = 34/376 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ +P R +L E FG+ P + K+ T LK +G ++FDT+ DLT++E +E
Sbjct: 221 KYVVVQTAPAIRVALGELFGMEPGTIVTGKMVTALKRMGFDAVFDTNFGADLTIMEEASE 280
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI-LPYISSVKSPQQTIGAT 135
I R K +N +LP+L++ CP W+ + E Q I +P S+ KSP +G
Sbjct: 281 LIYRLK---------NNKTLPILTNCCPAWVKFIEHQFPELIHVP--STCKSPHIMLGTI 329
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
K + +K G PD I V+VMPC KK EA R + +DE VD V
Sbjct: 330 AKTYYAEKKGLDPDNIVVVSVMPCIAKKAEAKRPELT----------KDEH---NNVDIV 376
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
+TT E+ +I+ + F L +S D L ++G AG G E R A++ +
Sbjct: 377 ITTRELGAMIKEAGIEFVKLPDSKFDSPLGEATGASVIFGTAG---GVIEAALRTASEWM 433
Query: 256 FGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
GK ++ +EF+ +R + A G LK + G N ++I+ ++ K +Y +
Sbjct: 434 TGKPLD-KVEFEELRGMEGVRRATVKIGDQELKIGIASGLGNARHILEDIRDGKANYHAI 492
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWL 373
E+MACP GC+ GGGQ P + + + K E IY E N + +N + LY +L
Sbjct: 493 EIMACPGGCIAGGGQ--PYHHGNDEVIKKRREAIYAEDRNKKVRKSHENKEILELYKNYL 550
Query: 374 EQPGSEKAKKHVHTEY 389
+P ++A + +HT +
Sbjct: 551 GEPFGKRAHELLHTHF 566
>gi|114566548|ref|YP_753702.1| iron hydrogenase small subunit [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337483|gb|ABI68331.1| iron hydrogenase, small subunit [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 574
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 126/396 (31%), Positives = 209/396 (52%), Gaps = 42/396 (10%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS----PLQVFKKLTTFLKSLGVK 57
E++ +DEFL+ + N K VI ++P R ++AE G+ P+ F + L+ +G
Sbjct: 206 EREQIDEFLAAVANPDKVVITQIAPAVRVAIAEEIGMMTGELPMGTFVQ---GLRQIGFD 262
Query: 58 SIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+ T+ + DLT++E NE + R K+ +LPM +S PGWI + E
Sbjct: 263 HVLHTNFTADLTILEEGNELLKRLKEG---------GTLPMFTSCSPGWINFCE-TFYPD 312
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+L +S+ KSPQQ GA K + +K+G P +IY V++MPC KK EAAR +
Sbjct: 313 LLDNLSTCKSPQQMFGALAKTYWAEKMGIDPSKIYSVSIMPCVAKKFEAARPEM------ 366
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
+ Y+D VD VLTT E+ L ++ ++F L S D + ++
Sbjct: 367 NDSGYQD-------VDLVLTTREIGRLFRMSGLDFSKLPASDFDSWMGKYTGAAVIF--- 416
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQ 296
G+SGG E R + + GK +E + F R + +E ++++G T++K A+ G
Sbjct: 417 GASGGVMEAALRTVYEVVTGKTLE-DVNFVATRGITGIKEATVDLDG-TVVKVAIANGLA 474
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--V 354
N + ++ +V+ + Y F+E+MACP GC+ GGGQ K + + ++ +E IY+E+ +
Sbjct: 475 NARKLMEQVRAGESPYHFIEIMACPGGCIGGGGQPITK---ANVKRVERIEAIYVEDEGL 531
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
L NP V++LY+E+L +P K+ + +HT YH
Sbjct: 532 PLRKSHDNPEVKTLYEEFLHEPLGHKSHELLHTHYH 567
>gi|308069432|ref|YP_003871037.1| Periplasmic [Fe] hydrogenase large subunit (Fe hydrogenlyase)
[Paenibacillus polymyxa E681]
gi|305858711|gb|ADM70499.1| Periplasmic [Fe] hydrogenase large subunit (Fe hydrogenlyase)
[Paenibacillus polymyxa E681]
Length = 501
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 188/391 (48%), Gaps = 41/391 (10%)
Query: 13 NINK--------GKAVIISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDT 62
N+NK G+ I+ +P R SLAE FG+ P K+ L+ LG ++DT
Sbjct: 115 NLNKVTDMMTKPGQLRIVQCAPAIRVSLAEEFGM-PFGTLTPGKMAAALRRLGFDRVYDT 173
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
+ D+T++E E I R + LPM +S CP W+ +AE + +L ++
Sbjct: 174 NFGADVTIMEEGTELIRRVTE---------GGPLPMFTSCCPAWVRFAEIEYPD-LLDHL 223
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
SS KSP Q +GA IK + Q P IY V +MPC K+ E R + + + Y
Sbjct: 224 SSCKSPMQMLGALIKSYGAQLDEVEPANIYSVAIMPCTCKQFECDRPEM------ESDGY 277
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 242
RD VD VLTT E+ I+ + ++F L + D L G ++GV +GG
Sbjct: 278 RD-------VDEVLTTRELAYWIKQRGIDFANLPDEEFDSPLGQYSGAGSIFGV---TGG 327
Query: 243 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIV 302
E R + L + + L+ +R + VA GK LK A+ G Q+ ++
Sbjct: 328 VMEAAIRTGYELLTNEKLP-KLQLDFVRGEEGIRVAEVQVGKLQLKVAVVAGLQHAYQLL 386
Query: 303 RKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE-TIYLENV--MLADP 359
+V+ +CDY F+EVM CP+GC++GGGQ K + E + + +IY + +
Sbjct: 387 DRVQAGECDYHFIEVMGCPAGCISGGGQPKLMLEKQRIEAYRARKSSIYGHDAAHQVRKS 446
Query: 360 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
+NP + LYDE+L +P + +HT +
Sbjct: 447 HENPHIIKLYDEFLGEPLGHVSHHLLHTTFQ 477
>gi|300854656|ref|YP_003779640.1| iron only hydrogenase [Clostridium ljungdahlii DSM 13528]
gi|300434771|gb|ADK14538.1| iron only hydrogenase [Clostridium ljungdahlii DSM 13528]
Length = 578
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 112/376 (29%), Positives = 193/376 (51%), Gaps = 34/376 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ +P R +L E FG+ P + K+ + L+ LG + DT + D+T++E +E
Sbjct: 227 KYVVVQTAPAIRVTLGEKFGMEPGTIVTGKMVSALRRLGFDKVCDTDFAADVTILEEAHE 286
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
FI R + + LP+L+S CP W+ + E Q +L S+ KSP G
Sbjct: 287 FIDRLQ---------NGGRLPILTSCCPSWVKFIEHQFPD-LLDIPSTCKSPHIMFGTLA 336
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K ++ +KL P +I V+VMPC KK E +R++ Q E +++ VD V+
Sbjct: 337 KTYMAEKLNIDPSKIVVVSVMPCIAKKYEISRKEL------QYEGHKN-------VDLVV 383
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ D+I ++F L + D L ++G ++GG E R A + +
Sbjct: 384 TTRELADMIMEAGIDFNKLPDEDFDNPLGESTGASVIFG---TTGGVIEAALRTAYEWIT 440
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G+ ++ +EF +R D +E ++ ++GK + + +G N + ++ +++ + Y +
Sbjct: 441 GETLK-EVEFHGVRGLDGLKEASINIDGKEI-NIGVAHGLGNARKLLEEIESGESKYHAI 498
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWL 373
E+MACP GC++GGGQ P + + K +E +Y E N L +NP V++LY E++
Sbjct: 499 EIMACPGGCIDGGGQ--PYHFGNLDIVKKRMEALYREDRNKPLRKSHENPEVQALYKEFI 556
Query: 374 EQPGSEKAKKHVHTEY 389
G +KA +HT Y
Sbjct: 557 GDVGGKKAHDLLHTHY 572
>gi|300123855|emb|CBK25126.2| Iron-hydrogenase [Blastocystis hominis]
Length = 759
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 119/394 (30%), Positives = 201/394 (51%), Gaps = 36/394 (9%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSI 59
+ E+ + + + GK +++ +P +R + E+FG P +V K+ K+LG + +
Sbjct: 215 ITEQSHIPRVKAAMRAGKVMVLQTAPATRVAFGENFGREPGEVTTGKMVACAKALGFQYV 274
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
FDT+ D+T++E E + R K + PM +S CPGW+ AEK ++
Sbjct: 275 FDTNFGADMTIMEEGTELLERIK---------NKGPFPMFTSCCPGWVNMAEKCY-PELI 324
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
P +SS +SP +G+ +K + +K+ +P++IY V++MPC KK E R Q+ E
Sbjct: 325 PNLSSCRSPHMMLGSCVKTYWAKKMNLKPEDIYLVSLMPCTAKKDEIERR----QMWLNE 380
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLI-QLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
T P VD+VLTT E+ D Q ++++ E D + G ++GV
Sbjct: 381 TT--------PTVDAVLTTKELGDFCKQENLTDWDSFAEMDFDSPMGICTGAGDIFGV-- 430
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
SGG E R A + GK +E + R D + ++++ G T + A+ + +
Sbjct: 431 -SGGVMEAALRTAYELQTGKPLE-KITVDEARGLDGTKRFSVDMNG-TKVNCAVVHS-KY 486
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV--M 355
+ ++ +K K D QFVEVMACP GC++GGGQ P ++ + K + IY +
Sbjct: 487 ARELMENIKAGKEDLQFVEVMACPGGCISGGGQ--PHSNRA-DTMDKRMNAIYSIDAGKK 543
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP ++++Y E+ E+PGS A + +HT Y
Sbjct: 544 LRKSHENPDIQTIYKEFFEKPGSHVAHELLHTTY 577
>gi|376261994|ref|YP_005148714.1| hydrogenase, Fe-only [Clostridium sp. BNL1100]
gi|373945988|gb|AEY66909.1| hydrogenase, Fe-only [Clostridium sp. BNL1100]
Length = 562
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/365 (30%), Positives = 181/365 (49%), Gaps = 39/365 (10%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
NK K VI ++P R ++ E FG+ P ++ K+ L+ LG +FDT+ DLT+IE
Sbjct: 218 NKNKRVIAQIAPAVRVAIGEDFGLQPGEISMGKIVAALRKLGFDQVFDTAVGADLTVIEE 277
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
E + R ++ ++ LP+ SS CP W YAE Q ++ +SS SPQQ G
Sbjct: 278 AEELMDRIQRKEK---------LPLFSSCCPAWFKYAE-QKHPELMENVSSCLSPQQMFG 327
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A IK ++ E + +MPC KK EA+R + + Q VD
Sbjct: 328 AVIKEQFKKEQSSNEKENIVIAIMPCTAKKYEASRPENTINGERQ-------------VD 374
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E+ +IQ + F LE+ +D G ++GV SGG +E V R+ K
Sbjct: 375 MVITTQELAIMIQENGIVFNELEDEAIDMPFGFTSGAGVIFGV---SGGVSEAVLRYYYK 431
Query: 254 TLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
++G + + +R + +E E++G+T+ + + +G +N + ++RK+K + +
Sbjct: 432 ERNASTLKG-ISYSGVRGMEGVKEATAEIDGRTV-RIGVVHGLKNAEKLIRKIKRGEEKF 489
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK----NPLVRSL 368
F+EVMACP GC+ G GQ P+ E ++ L + V + P K NP + +L
Sbjct: 490 DFIEVMACPGGCIGGAGQPIPQ-----NENVRKLRAKGIYKVDKSLPIKRSDDNPTIDAL 544
Query: 369 YDEWL 373
Y+ L
Sbjct: 545 YNGIL 549
>gi|83590717|ref|YP_430726.1| ferredoxin hydrogenase [Moorella thermoacetica ATCC 39073]
gi|83573631|gb|ABC20183.1| Ferredoxin hydrogenase [Moorella thermoacetica ATCC 39073]
Length = 460
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 194/382 (50%), Gaps = 50/382 (13%)
Query: 22 ISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIAR 80
+ +P R +LAE FG+SP V ++ L+ LG K ++DT+ + DLT++E E + R
Sbjct: 106 VQFAPAIRFALAEDFGLSPQVVTVGRIVAALRRLGFKYVYDTNFAADLTVMEEGYELLQR 165
Query: 81 YKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHI 140
+ + +LP+ SS CP W+ + E Q ++ +S+ KSPQQ GA K +
Sbjct: 166 LQ---------GDGALPLFSSCCPAWVKFVE-QAYPQLIANLSTCKSPQQMAGAIFKTYT 215
Query: 141 CQ-KLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
Q R ++ VMPC KK E R + G +VD+VLTT
Sbjct: 216 GQLDPDLRSRHLFVTAVMPCIAKKFECNRPEL-------------GGSYGRDVDAVLTTR 262
Query: 200 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV 259
E+ LI+ K +++ +L E D+ L G ++GV +GG E V R AA+ + GK
Sbjct: 263 ELAHLIKDKGIDWHSLAEEEPDQPLGEYSGAGAIFGV---TGGVTEAVLRTAAEVVGGKP 319
Query: 260 IEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVM 318
+E +EF +R + R+V + + GK L+ + G +N+ I+ + K + F+EVM
Sbjct: 320 LE-EIEFHEVRGMAGTRKVNINL-GKEQLEIIIVAGLKNVVPILDDLIAGKASFHFMEVM 377
Query: 319 ACPSGCLNGGGQIKPKPGQSPKELIKTLE-TIYLE----------NVMLADPFKNPLVRS 367
ACP+GCL+GGGQ PK L++T +IY + ++ + +NP ++
Sbjct: 378 ACPAGCLSGGGQ--------PKILVETYRGSIYRQRAASIYNHDRDLPVRKAHENPAIKQ 429
Query: 368 LYDEWLEQPGSEKAKKHVHTEY 389
LY ++L QP E + +HT Y
Sbjct: 430 LYADFLGQPLGELSHALLHTHY 451
>gi|402571252|ref|YP_006620595.1| hydrogenase, Fe-only [Desulfosporosinus meridiei DSM 13257]
gi|402252449|gb|AFQ42724.1| hydrogenase, Fe-only [Desulfosporosinus meridiei DSM 13257]
Length = 580
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 122/396 (30%), Positives = 200/396 (50%), Gaps = 38/396 (9%)
Query: 1 MLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
+ E +D+ +N + V++ +P R +L E FG+ P + K+ L+ LG
Sbjct: 210 LTELDQVDKVWKALNDPNQFVVVQTAPAVRVALGEGFGLEPGTIVTGKMVAALRRLGFDR 269
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E E + R + LP+L+S CP W+ + E Q +
Sbjct: 270 VFDTDFAADLTIMEEATELVHRIQH---------GGRLPLLTSCCPAWVKFFEHQFPD-L 319
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ KSP + +G IK + + LG P I V+VMPC KK EAAR +
Sbjct: 320 LDIPSTCKSPHEMLGVLIKSYYAKTLGIDPKTITVVSVMPCVAKKYEAARPEL------- 372
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+G E +VD V+TT E+ +I+ +++F+ L+E D L ++G
Sbjct: 373 -----SQGAETADVDIVITTRELARMIREASIHFDNLKEQEFDHPLGESTGASVIFG--- 424
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
++GG E R A + L G+ +E +EF+ +R D +E + + G+ + A+ +G N
Sbjct: 425 TTGGVLEAALRTAYEVLTGETLE-KVEFEVLRGMDGLKEAVVPIAGRDY-RAAVVHGLGN 482
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLA 357
+ I+ K++ + DY +E+MACP GC+ GGGQ P + + L E +Y E+ A
Sbjct: 483 ARTILEKIQAGESDYDVIEIMACPGGCIGGGGQ--PYHHGNLEILSSRAEALYRED--RA 538
Query: 358 DPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
P + NP + LY ++L +P E+A K +HT Y
Sbjct: 539 KPLRKSHENPAIIGLYKDFLGEPYGERAHKLLHTSY 574
>gi|448106612|ref|XP_004200790.1| Piso0_003397 [Millerozyma farinosa CBS 7064]
gi|448109697|ref|XP_004201421.1| Piso0_003397 [Millerozyma farinosa CBS 7064]
gi|359382212|emb|CCE81049.1| Piso0_003397 [Millerozyma farinosa CBS 7064]
gi|359382977|emb|CCE80284.1| Piso0_003397 [Millerozyma farinosa CBS 7064]
Length = 537
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 138/423 (32%), Positives = 195/423 (46%), Gaps = 93/423 (21%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTT--FLKSLGVKSIFDTSCSRDLTLIEACN 75
K + S+S QSRASLA +G+S + V KL F+ +G + TS R L+LI
Sbjct: 108 KVFVASVSHQSRASLAGAYGVS-VAVMDKLLIDLFVAQMGFTHVVGTSLGRSLSLIYEAQ 166
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
I R + S P LSS CPGW+ YAEK Y++P++S VKSPQQ G
Sbjct: 167 NIIDRKTR---------GVSGPTLSSVCPGWVLYAEKT-HPYVIPHMSDVKSPQQITGCL 216
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+K + ++LG D IYHV++MPC+DKKLE+AR E Y E L P+VD V
Sbjct: 217 LKSLVARELGISRDNIYHVSIMPCFDKKLESARP----------EKYDGE-LPSPDVDCV 265
Query: 196 LTTGEVLDLIQLKAVNFEAL-------EESPLDKMLTNVDDE-----------GHLYGVA 237
LT E++ LI+ + N +L + P ++N+ +
Sbjct: 266 LTPKELVTLIE-ENTNIYSLIPPHTDITKLPQPASMSNIYKQVAPKTWPSIELAWASNEG 324
Query: 238 GSSGGYAETVFRHAAKTLFGK--VIEGHLEFKTI----RNSDFREVALEVEGKTLLKFAL 291
SSGGYA L + EF+ + RNSD E+ L + + A+
Sbjct: 325 SSSGGYAYHYLAALQLHLMASDPSVYNPQEFELVTVGGRNSDVYEMRLLFRKEKVGSAAV 384
Query: 292 CYGFQNLQNIVRKVK-----------------------------------MRKCDYQFVE 316
GF+N+QN+VR++K KCDY VE
Sbjct: 385 VNGFKNIQNLVRRLKPSKSTVSSNPLANRRRARLAKANKSDDSSDTDQADPSKCDY--VE 442
Query: 317 VMACPSGCLNGGGQIKPKPGQSPKELIKTLETIY--LENVMLADPFKNPLVRSLYD--EW 372
+MACP+GC+NGGGQI P S KE + ++ Y +E + L F +P R++ D W
Sbjct: 443 IMACPNGCINGGGQISPPGDVSAKEWLASIIDRYRSIETISL---FDSPDARAVSDIIHW 499
Query: 373 LEQ 375
Q
Sbjct: 500 SSQ 502
>gi|188588162|ref|YP_001921431.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E3 str.
Alaska E43]
gi|188498443|gb|ACD51579.1| hydrogenase [Clostridium botulinum E3 str. Alaska E43]
Length = 565
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/380 (30%), Positives = 187/380 (49%), Gaps = 37/380 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N + V+ ++P R +L E FG+ P + V K+ ++ LG I+DTS + D+T+IE
Sbjct: 219 NPKQRVVAQVAPAVRVALGEEFGVKPGENVMDKIVAAMRKLGFDEIYDTSLTADMTIIEE 278
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
NEF+ Q ES D + LP+ +S CP W+ Y E + ++ Y+S+ KSP Q G
Sbjct: 279 SNEFL----QKLESGDNK----LPLFTSCCPAWVRYVETK-HPELMKYVSTCKSPMQMFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+ IK + + E V +MPC KK EAARE+F+ I ++D
Sbjct: 330 SVIKEYFKENDSLEEKETISVAIMPCTAKKAEAAREEFITN-------------GIKDID 376
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E+ +I + F+ +E D + G ++GV +GG E V R +
Sbjct: 377 YVITTTELCKMINEAGLQFDKIEPESSDMPFSLYSGAGVIFGV---TGGVTEAVIRGVVE 433
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
K ++ +EF +R D ++ G+ L+ + G N +N++ K++ + +
Sbjct: 434 DKSSKALK-EIEFIGVRGMDGVKICEVPFGEKNLRIGVVSGLANAENLIDKIQSGEEHFD 492
Query: 314 FVEVMACPSGCLNGGGQ---IKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYD 370
FVEVMACP GC+ G GQ +K + K L K + ++ +NP++ SLY+
Sbjct: 493 FVEVMACPGGCIAGAGQPFSLKEGNKERAKGLYKVDKVTQIKRSQ-----ENPVLISLYN 547
Query: 371 EWLEQPGSEKAKKHVHTEYH 390
L++ E HVH E+
Sbjct: 548 GLLKERSKELL--HVHYEHE 565
>gi|226941246|ref|YP_002796320.1| HydC [Laribacter hongkongensis HLHK9]
gi|226716173|gb|ACO75311.1| HydC [Laribacter hongkongensis HLHK9]
Length = 599
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 118/396 (29%), Positives = 194/396 (48%), Gaps = 41/396 (10%)
Query: 3 EKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFD 61
E +++ ++L ++ + ++P R L E FG+ P V ++ L+++G I D
Sbjct: 216 ETRTVMDYL--VDPDIVTVFQIAPAIRVGLGEAFGLPPGTNVEGQVVAALRAIGADVILD 273
Query: 62 TSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPY 121
T+ + DL ++E +E + R +Q + + +S CPGW+ YAEK ILP
Sbjct: 274 TNFAADLVIMEEGHEVLGRVRQHEGT----------TFTSCCPGWVDYAEKHHPD-ILPM 322
Query: 122 ISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEET 181
+SS +SPQ +G+ K + ++G P + V+VMPC KK EAAR QL
Sbjct: 323 MSSTRSPQACLGSLAKSWLPTRMGIDPARVRVVSVMPCTAKKQEAARP----QLGRN--- 375
Query: 182 YRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK-MLTNVDDEGHLYGVAGSS 240
+P+VD VLT E L++ + V+ ALE S D +++ G ++ G+S
Sbjct: 376 ------GVPDVDVVLTIREFARLLRREGVDLAALEPSAFDDPLMSEYSGAGAIF---GAS 426
Query: 241 GGYAETVFRHAAKTLFGKVIE---GHLEFKTIR-NSDFREVALEVEGKT-LLKFALCYGF 295
GG E R TL+ V + G ++ + +R N RE +EV G L+ A+ +G
Sbjct: 427 GGVMEAAIR----TLYYAVNQRELGEIDVQAVRGNESVREATIEVGGDVGTLRVAIVHGL 482
Query: 296 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV- 354
+ + + V K Y F+EVMACP GC++GGG ++ + ++
Sbjct: 483 RAAGQMAKAVLAGKARYDFIEVMACPGGCIDGGGHLRHNKRYLKHAGERRAGLFAIDRAR 542
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
+ +N VR LY+++L +P S A +HT YH
Sbjct: 543 AVRQSHRNQQVRRLYEDFLGEPLSHVAHDLLHTHYH 578
>gi|410729206|ref|ZP_11367287.1| hydrogenase, Fe-only [Clostridium sp. Maddingley MBC34-26]
gi|410596048|gb|EKQ50735.1| hydrogenase, Fe-only [Clostridium sp. Maddingley MBC34-26]
Length = 566
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 183/376 (48%), Gaps = 37/376 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N+ + V+ ++P R ++ E FGI Q V K+ ++ LG I+DTS DLT+IE
Sbjct: 219 NRRQRVVAQVAPAVRIAVGEEFGIKAGQNVMGKIAAAMRRLGFDEIYDTSVGADLTVIEE 278
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
EF+ + N+ +P+ +S CP WI YAE + ++PY+SS KSP + G
Sbjct: 279 TKEFLEKLGCE--------NNKIPLFTSCCPAWIRYAETK-HPELMPYVSSCKSPMEMFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A IK + ++ E V VMPC KK EAARE+F+ RD VD
Sbjct: 330 AVIKEYYKERDASEDKETISVAVMPCTAKKSEAAREEFI------RNGVRD-------VD 376
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E+ D+I+ + F+ +E D + G ++GV SGG E V R A+
Sbjct: 377 YVITTTELCDMIKEIGIKFDEIEAESSDVPFSLYSGAGVIFGV---SGGVTEAVIRSIAE 433
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
K ++ +EF R D +V + +++ + G N + ++ ++ K +
Sbjct: 434 NKTPKGLK-EIEFIGARGIDGIKVCEVPVAENIIRIGIVSGLSNAEKLIERINSGKEHFD 492
Query: 314 FVEVMACPSGCLNGGGQ---IKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYD 370
F+EVMACP GC+ G GQ + + K L K + ++ +NP++ +LYD
Sbjct: 493 FIEVMACPGGCICGAGQPFCLTEDKNERAKGLYKVDKVAQIKR-----SEENPMITALYD 547
Query: 371 EWLEQPGSEKAKKHVH 386
L+ G K HVH
Sbjct: 548 RLLK--GRSKELLHVH 561
>gi|344229878|gb|EGV61763.1| hypothetical protein CANTEDRAFT_109743 [Candida tenuis ATCC 10573]
Length = 532
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 129/414 (31%), Positives = 197/414 (47%), Gaps = 86/414 (20%)
Query: 1 MLEKQSLDEFLSNINK---GKAVIISLSPQSRASLAEHFGISPLQVFKKLTT-FLKSLGV 56
++ + S E L +N+ + S+S QSRASLA G++ Q + L F+ +G
Sbjct: 82 LVAQHSHQELLKALNQRDTNTHFVASVSHQSRASLATALGVTVEQADRLLINLFVNQMGF 141
Query: 57 KSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGS 116
+++ TS R L+LI I + + SN P+LSS CPGW+ YAEK
Sbjct: 142 QAVVGTSLGRKLSLISESYNIIHK---------KESNFEGPLLSSVCPGWVLYAEKT-HP 191
Query: 117 YILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLD 176
YILP +S +KSPQQ G +K+ + ++LG IYH+++MPC+DKKLE+AR +
Sbjct: 192 YILPKMSDIKSPQQITGCLLKNIMAEQLGTDKSNIYHLSIMPCFDKKLESARP----EKG 247
Query: 177 SQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGV 236
+E TY+D VD VLT E++ L+ F+ + + D + + V + V
Sbjct: 248 EEESTYKD-------VDCVLTAKELVTLLDQHPDTFKLIPDDVNDVIHSRVSIQEIYKQV 300
Query: 237 A----------------GSSGGYAE---TVFRHAAKTLFGKVIEGHLEFKTI--RNSDFR 275
A +SGGY+ T+ ++ T +++E + KTI +N+D
Sbjct: 301 APVNWPLVEYAWSNDSGSASGGYSHNYLTIMKNHLMTKSPELVEDNFSIKTIYGKNTDIY 360
Query: 276 EVALEVEGKTLLKFALCYGFQNLQNIVRKVK----------------------------- 306
E+ L + + A+ GF+N+QN+VR+ K
Sbjct: 361 ELRLMYNDEKVASAAIVNGFRNIQNLVRRFKPSAPQKATAKVNPLVARRRARMSKPSGEG 420
Query: 307 --------MRKCDYQFVEVMACPSGCLNGGGQIK-PKPGQSPKELIKTLETIYL 351
KCDY VEVMACP+GC+NGGGQI P+ L+K +E L
Sbjct: 421 SIQEELADASKCDY--VEVMACPNGCINGGGQISHPEDMLEKDWLLKAVENYQL 472
>gi|402309362|ref|ZP_10828357.1| [FeFe] hydrogenase, group A [Eubacterium sp. AS15]
gi|400372857|gb|EJP25795.1| [FeFe] hydrogenase, group A [Eubacterium sp. AS15]
Length = 578
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 192/377 (50%), Gaps = 35/377 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI+ ++P R +L E FG+ P + K+ LK LG IFDT+ + DLT++E +E
Sbjct: 226 KTVIVQVAPAVRVALGEEFGMEPGTIVTGKMINALKYLGFDKIFDTNFAADLTIMEEASE 285
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ R + LP+L+S CP W+ + E Q + L S+ KSP + GA
Sbjct: 286 FVHRLN---------NGGKLPILTSCCPSWVNFFEHQFTDF-LDIPSTCKSPHEMFGAIA 335
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K ++ QKL P + V+VMPC KK EAAR E G +VD V+
Sbjct: 336 KTYLAQKLNIDPKNMVLVSVMPCVAKKYEAAR----------PELGNGAG---KDVDYVI 382
Query: 197 TTGEVLDLIQLKAVNFEAL-EESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
TT E+ +I+ +NF L +++ D + G ++ G++GG E R A + +
Sbjct: 383 TTRELALMIKEAGINFGELGDDAEFDNPMGASTGAGVIF---GATGGVIEATVRTAYEWI 439
Query: 256 FGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
G + LEF+ +R + ++ ++++G+ ++ A+ G N + ++ ++ + +
Sbjct: 440 TGNELP-KLEFEELRGLEGIKQTTVDIDGRP-IRIAVANGLGNTRRLLNMIRDNEAHFDA 497
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEW 372
+EVMACP GC+ G GQ P + + K + IY + + +NP++ LY E+
Sbjct: 498 IEVMACPGGCVGGAGQ--PYHKGNLDVIRKRAQGIYKADRDNKIRKSHENPMIIQLYKEF 555
Query: 373 LEQPGSEKAKKHVHTEY 389
L +P SEKA + +HT Y
Sbjct: 556 LGEPYSEKAHELLHTSY 572
>gi|212542391|ref|XP_002151350.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Talaromyces marneffei ATCC 18224]
gi|259511271|sp|B6QQH9.1|NAR1_PENMQ RecName: Full=Cytosolic Fe-S cluster assembly factor nar1; AltName:
Full=Nuclear architecture-related protein 1
gi|210066257|gb|EEA20350.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Talaromyces marneffei ATCC 18224]
Length = 590
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 172/360 (47%), Gaps = 58/360 (16%)
Query: 21 IISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-----------GVKSIFDTSCSRDLT 69
+ S+SPQ RASLA + IS + + L+ G + DT+ R +
Sbjct: 119 VASVSPQVRASLAATYDISERKAGHMIDQLLRGPQGLRNGGKHGNGFTWVLDTNVLRQMV 178
Query: 70 LIEACNEFIARYKQSQESDDERSNSS--LPMLSSACPGWICYAEKQLGSYILPYISSVKS 127
L A E S S +S P+LSSACPGWICYAEK ++LP++S +KS
Sbjct: 179 LTLAAQEVTEALHTSSASSGSGKYTSPKKPILSSACPGWICYAEKT-HPHVLPHLSRLKS 237
Query: 128 PQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGL 187
PQ G +K + + LG P +I+H+ VMPC+DKKLEA+RE+ D+ D
Sbjct: 238 PQALSGTFVKSILSRTLGIAPSQIWHLAVMPCFDKKLEASREELT---DAAWSNISDS-- 292
Query: 188 EIPEVDSVLTTGEVLDLIQLKAVNFEAL-------------EESPLDKMLTNVDDEGHLY 234
+ +VD V+T+ E+L L + ++ +L + +D L +
Sbjct: 293 PVRDVDCVITSRELLMLASSRNISLPSLPLKSLAPTYAPHFPDPTVDSFLFSHTQTSKQS 352
Query: 235 GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GKTLLKFALCY 293
G+SGGY + + G I E + RNSD E +L E + ++K A Y
Sbjct: 353 SKYGTSGGYLYYILLLHKEKHPGSRI----EVQRGRNSDVIEYSLMSETNEAIMKAARYY 408
Query: 294 GFQNLQNIVRKVKMRKC---------------------DYQFVEVMACPSGCLNGGGQIK 332
GF+N+QN+VRK+K + DY FVEVMACP GC NGGGQI+
Sbjct: 409 GFRNIQNLVRKMKPARASRLPGANRRGAAGSGASSSGLDYAFVEVMACPGGCTNGGGQIR 468
>gi|310642488|ref|YP_003947246.1| hydrogenase, fe-only [Paenibacillus polymyxa SC2]
gi|309247438|gb|ADO57005.1| Hydrogenase, Fe-only [Paenibacillus polymyxa SC2]
Length = 446
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 190/391 (48%), Gaps = 34/391 (8%)
Query: 6 SLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDT 62
SL++ + K G+ I+ +P R SLAE FG+ P K+ L+ LG ++DT
Sbjct: 60 SLNKVADMMKKPGQLRIVQCAPAIRVSLAEEFGM-PFGTLTPGKMAAALRRLGFDRVYDT 118
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
+ D+T++E E I R + LPM +S CP W+ +AE + +L ++
Sbjct: 119 NFGADVTIMEEGTELIRRVTE---------GGPLPMFTSCCPAWVRFAEIEYPD-LLDHL 168
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
SS KSP Q +GA +K + Q P IY V +MPC K+ E R + + + Y
Sbjct: 169 SSCKSPMQMVGALVKTYGAQLDEVEPANIYSVAIMPCTCKQFECDRPEM------ESDGY 222
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 242
RD VD VLTT E+ I+ + ++F L + D L G ++GV +GG
Sbjct: 223 RD-------VDEVLTTRELAYWIKQQGIDFMNLPDEEFDAPLGQYSGAGTIFGV---TGG 272
Query: 243 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIV 302
E R + L + + L+ +R + VA G+ LK A+ G Q+ ++
Sbjct: 273 VMEAAIRTGYELLTNEKLP-KLQLDFVRGEEGIRVAEVQVGELQLKVAVVAGLQHAYQLL 331
Query: 303 RKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE-TIYLENV--MLADP 359
+V+ +CDY F+EVM CP+GC++GGGQ K + E + + +IY + +
Sbjct: 332 DRVQAGECDYHFIEVMGCPAGCISGGGQPKLMLEKQKIEAYRARKSSIYGHDAASQVRKS 391
Query: 360 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
+NP + LYDE+L +P + +HT +
Sbjct: 392 HENPFIIKLYDEFLGEPLGHVSHHLLHTTFQ 422
>gi|339441749|ref|YP_004707754.1| hypothetical protein CXIVA_06850 [Clostridium sp. SY8519]
gi|338901150|dbj|BAK46652.1| hypothetical protein CXIVA_06850 [Clostridium sp. SY8519]
Length = 579
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 123/375 (32%), Positives = 193/375 (51%), Gaps = 35/375 (9%)
Query: 21 IISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
++ ++P RA+ E G+SP + ++L+ LK LG +FDT S DLT++E +EF+
Sbjct: 224 VVQIAPSIRAAWGEMLGLSPEEASMERLSATLKFLGFDYVFDTDFSADLTIMEEGSEFLE 283
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
R K + PM +S CPGW+ + + Y ++S+ KSPQQ GA IK +
Sbjct: 284 RLKGGRRD--------FPMFTSCCPGWVRFLKSHYPEYT-DHLSTAKSPQQMFGAVIKSY 334
Query: 140 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
+ Q G P +I+ +++MPC KK E+ D D+ + P+VD VLT
Sbjct: 335 VAQLKGLDPKKIFSISIMPCLAKKQES---DIPVMNDACGD---------PDVDVVLTNR 382
Query: 200 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV 259
E++ LI+ + V E LEE PLD + G+++G ++GG E R A G+
Sbjct: 383 ELVRLIRSQHVKPELLEEVPLDDPMGFGSGAGNIFG---ATGGVMEAALRSAYYLATGEN 439
Query: 260 IEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVM 318
+ F +R D ++E E+ G LK A+ G N +++ +K + Y FVEVM
Sbjct: 440 PDPD-AFCAVRGMDGWKEAEFEISG-IPLKIAVVNGLGNADRLLKAMKKGRVSYDFVEVM 497
Query: 319 ACPSGCLNGGGQIKPKPGQSPKELIKTLETI---YLENVMLADPFKNPLVRSLYDEWLEQ 375
ACP GC+ GGGQ P KE+ + I + L +NP +R +Y ++L
Sbjct: 498 ACPGGCVGGGGQ----PFYDGKEMAASRAPILYAFDRKTDLRFSHENPSIRKIYADYLGA 553
Query: 376 PGSEKAKKHVHTEYH 390
P SE++ K +HT++H
Sbjct: 554 PLSERSHKLLHTDHH 568
>gi|302340161|ref|YP_003805367.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Spirochaeta smaragdinae DSM 11293]
gi|301637346|gb|ADK82773.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Spirochaeta smaragdinae DSM 11293]
Length = 583
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 120/401 (29%), Positives = 200/401 (49%), Gaps = 39/401 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKS 58
+ EK + L+ I + K V + ++P R +L E FG+ P ++ K+ L+ LG+ +
Sbjct: 206 IFEKDETGKLLAAIRDPEKHVAVQIAPAVRVALGEAFGMEPGEISTGKIYAALRKLGIDA 265
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT++E +E + R + ++P ++S CP W + EK I
Sbjct: 266 VFDTNFSADLTIMEEGSELVQRLT--------KGTGAIPQITSCCPAWTDFMEKYYPDMI 317
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
P S+ KSP GA K + +K P IY +MPC KK E R + ++ Q
Sbjct: 318 -PNFSTAKSPMMMQGAITKTYYAEKKKIDPANIYSAAIMPCTAKKYEITRCEKMYSSGYQ 376
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+VD VLTT E+ LI+ ++F +L++ D + G ++GV
Sbjct: 377 ------------DVDVVLTTRELARLIKAMGIDFASLKDEKADSPIGAYSGAGTIFGV-- 422
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
+GG E R A K + GK +E +E +R + R+ ++++GK +K A+ +G N
Sbjct: 423 -TGGVMEAALRTAHKLITGKELE-KVEVNEVRGVEGVRKGEVDIDGKK-VKVAIAHGMAN 479
Query: 298 LQNIVRKV-----KMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE 352
+ I+ +V K + Y F+EVMAC GC++GGGQ G + + K + +Y +
Sbjct: 480 VSQILDEVRDAREKGEEPPYHFIEVMACRGGCISGGGQPY---GTTDEVRKKRIAGLYKD 536
Query: 353 NVMLAD--PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
+V A +NP + +Y E+L +P K+ + +HT Y P
Sbjct: 537 DVNSAVRCSHENPEISQIYKEFLGEPLGHKSHELLHTGYTP 577
>gi|168205175|ref|ZP_02631180.1| iron hydrogenase [Clostridium perfringens E str. JGS1987]
gi|168210350|ref|ZP_02635975.1| iron hydrogenase [Clostridium perfringens B str. ATCC 3626]
gi|170663259|gb|EDT15942.1| iron hydrogenase [Clostridium perfringens E str. JGS1987]
gi|170711592|gb|EDT23774.1| iron hydrogenase [Clostridium perfringens B str. ATCC 3626]
Length = 572
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 193/381 (50%), Gaps = 42/381 (11%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI++++P R S+ E F + Q V KL T L+ LG +FD + D+T++E E
Sbjct: 223 KHVIVAMAPAVRTSMGELFKMGYGQDVTGKLYTALRELGFDKVFDINFGADMTIMEEATE 282
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY---ILPYISSVKSPQQTIG 133
I R K +N PML+S CP W+ +++ +Y ++ +SS KSPQQ G
Sbjct: 283 LIERIK---------NNGPFPMLTSCCPSWV----REVENYFPELVENLSSAKSPQQIFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + Q P +++ VTVMPC KK EA R + +EG I +D
Sbjct: 330 AASKTYYPQVADIDPKKVFTVTVMPCTSKKFEADRPEM-----------ENEG--IRNID 376
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+V+TT E+ +I+ ++F LE+ +D + G ++ G++GG E R A
Sbjct: 377 AVITTRELARMIKAAKIDFAKLEDGEVDPAMGEYTGAGVIF---GATGGVMEAALRTAKD 433
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ ++ +++++ +R + +E +E+ G K A+ G N+ +V+ K+ DY
Sbjct: 434 FMENDNLD-NVDYEAVRGLAGIKEAEVEIAGNE-YKLAVVSGAANVFELVKSGKIN--DY 489
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRSL 368
F+EVMACP GC+NGGGQ S K I+ + L +N+ +N + +
Sbjct: 490 HFIEVMACPGGCVNGGGQPHISAEDSDKMDIREVRASVLYNQDKNLEKRKSHQNSALLKM 549
Query: 369 YDEWLEQPGSEKAKKHVHTEY 389
Y+ ++ +PG +A + +H +Y
Sbjct: 550 YENYMGKPGHGRAHELLHMKY 570
>gi|154248935|ref|YP_001409760.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1]
gi|154152871|gb|ABS60103.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1]
Length = 586
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 128/384 (33%), Positives = 197/384 (51%), Gaps = 35/384 (9%)
Query: 10 FLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDL 68
L+ GK + +P R ++ E FG+ P V K+ L+ LG +FDT+ + DL
Sbjct: 216 LLNKKEPGKVYVAQTAPSVRVAIGEEFGVEPGTVSTGKMVAALRRLGFDYVFDTNFAADL 275
Query: 69 TLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSP 128
T++E E I R + + PM +S CPGW+ EK+ + +S+ KSP
Sbjct: 276 TIMEEGYELIHRLQ---------NGGKFPMFTSCCPGWVNEMEKEWPE-LRENLSTAKSP 325
Query: 129 QQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE 188
QQ + + +K + QK+G +P++I V+VMPC KK E R + +G++
Sbjct: 326 QQMMSSVVKTYFAQKIGVKPEDIVMVSVMPCTAKKDEITRPQQLV-----------DGIK 374
Query: 189 IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVF 248
+ D V+TT E+ LI+LK + F L E D L G L+GV +GG E
Sbjct: 375 V--TDYVITTRELGKLIKLKGIPFVNLPEEQYDSPLGTSTGAGALFGV---TGGVMEAAL 429
Query: 249 RHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKM 307
R A + + G+ + L F ++R D RE ++++GK L+ A+ +G N++ ++ ++K
Sbjct: 430 RTAYEVITGEKLP-KLVFDSVRGLDGVREAEIDIKGKK-LRVAIAHGMANVKRLLAEMKE 487
Query: 308 RKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLV 365
K Y FVE+MAC GC+ GGGQ K P L K IY E +L +NP +
Sbjct: 488 GKRYYDFVEIMACYGGCIGGGGQPK---NLDPDILKKRAAAIYSIDELSVLRRSHENPDI 544
Query: 366 RSLYDEWLEQPGSEKAKKHVHTEY 389
LY+E+LE+P S KA +HT Y
Sbjct: 545 IKLYEEFLEKPNSHKAHHLLHTHY 568
>gi|2245000|emb|CAB10420.1| LET1 like protein [Arabidopsis thaliana]
gi|7268394|emb|CAB78686.1| LET1 like protein [Arabidopsis thaliana]
Length = 578
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 111/181 (61%), Gaps = 51/181 (28%)
Query: 224 LTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG 283
LTNV +EG LYGVAGSSGGYAET+FRHAAK LFG+ IEG LEFKT+RNSDFREV L+++
Sbjct: 448 LTNVTEEGDLYGVAGSSGGYAETIFRHAAKALFGQTIEGPLEFKTLRNSDFREVTLQIKP 507
Query: 284 KTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI 343
KT GQS KELI
Sbjct: 508 KT--------------------------------------------------GQSQKELI 517
Query: 344 KTLETIYLENVML-ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHN 402
+LE Y+ + L DP++NP + L++EWL++PGS +AKK++HT+YHPVVKS+T+QL+N
Sbjct: 518 HSLEATYMNDTTLNTDPYQNPTAKRLFEEWLKEPGSNEAKKYLHTQYHPVVKSVTSQLNN 577
Query: 403 W 403
W
Sbjct: 578 W 578
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 58/104 (55%), Gaps = 23/104 (22%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLEKQSLDEFLS ++KGK + H PL+ +T+ L
Sbjct: 349 MLEKQSLDEFLSALSKGKTWLCPFL---------HSRELPLRF--TMTSLL--------- 388
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACP 104
SRDL LIE+CNEF++RYKQ+ D E S S LP+LSSACP
Sbjct: 389 ---FSRDLVLIESCNEFVSRYKQANSDDGENSQSPLPVLSSACP 429
>gi|168213257|ref|ZP_02638882.1| iron hydrogenase [Clostridium perfringens CPE str. F4969]
gi|168216689|ref|ZP_02642314.1| iron hydrogenase [Clostridium perfringens NCTC 8239]
gi|169347026|ref|ZP_02865968.1| iron hydrogenase [Clostridium perfringens C str. JGS1495]
gi|422347408|ref|ZP_16428320.1| hydrogenase, Fe-only [Clostridium perfringens WAL-14572]
gi|422875292|ref|ZP_16921777.1| iron hydrogenase [Clostridium perfringens F262]
gi|169296709|gb|EDS78838.1| iron hydrogenase [Clostridium perfringens C str. JGS1495]
gi|170715282|gb|EDT27464.1| iron hydrogenase [Clostridium perfringens CPE str. F4969]
gi|182381184|gb|EDT78663.1| iron hydrogenase [Clostridium perfringens NCTC 8239]
gi|373224706|gb|EHP47043.1| hydrogenase, Fe-only [Clostridium perfringens WAL-14572]
gi|380303822|gb|EIA16118.1| iron hydrogenase [Clostridium perfringens F262]
Length = 572
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 193/381 (50%), Gaps = 42/381 (11%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI++++P R S+ E F + Q V KL T L+ LG +FD + D+T++E E
Sbjct: 223 KHVIVAMAPAVRTSMGELFKMGYGQDVTGKLYTALRELGFDKVFDINFGADMTIMEEATE 282
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY---ILPYISSVKSPQQTIG 133
I R K +N PML+S CP W+ +++ +Y ++ +SS KSPQQ G
Sbjct: 283 LIERIK---------NNGPFPMLTSCCPSWV----REVENYFPELVENLSSAKSPQQIFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + Q P +++ VTVMPC KK EA R + +EG I +D
Sbjct: 330 AASKTYYPQVADIDPKKVFTVTVMPCTSKKFEADRPEM-----------ENEG--IRNID 376
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+V+TT E+ +I+ ++F LE+ +D + G ++ G++GG E R A
Sbjct: 377 AVITTRELARMIKAAKIDFAKLEDGEVDPAMGEYTGAGVIF---GATGGVMEAALRTAKD 433
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ ++ +++++ +R + +E +E+ G K A+ G N+ +V+ K+ DY
Sbjct: 434 FMENDNLD-NVDYEAVRGLAGIKEAEVEIAGNE-YKLAVVSGAANVFELVKSGKIN--DY 489
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRSL 368
F+EVMACP GC+NGGGQ S K I+ + L +N+ +N + +
Sbjct: 490 HFIEVMACPGGCVNGGGQPHISAEDSDKMDIREVRASVLYNQDKNLEKRKSHQNSALLKM 549
Query: 369 YDEWLEQPGSEKAKKHVHTEY 389
Y+ ++ +PG +A + +H +Y
Sbjct: 550 YENYMGKPGHGRAHELLHMKY 570
>gi|383785983|ref|YP_005470552.1| hydrogenase, Fe-only [Fervidobacterium pennivorans DSM 9078]
gi|383108830|gb|AFG34433.1| hydrogenase, Fe-only [Fervidobacterium pennivorans DSM 9078]
Length = 588
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 125/385 (32%), Positives = 201/385 (52%), Gaps = 35/385 (9%)
Query: 9 EFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRD 67
+ L++ GK + +P R ++ E FG+ P + K+ L+ LG +FDT+ + D
Sbjct: 215 KMLNSKEPGKVYVAQTAPSVRVAIGEEFGMEPGSISTGKMVAALRRLGFDYVFDTNFAAD 274
Query: 68 LTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKS 127
LT++E E I R + + PM +S CPGW+ EK+ + ++S+ KS
Sbjct: 275 LTIMEEGYELIGRLQ---------NGGKFPMFTSCCPGWVNEMEKEWPE-LREHLSTAKS 324
Query: 128 PQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGL 187
PQQ + + +K + QK+G +P++I V++MPC KK E R + +G+
Sbjct: 325 PQQMMSSVVKTYFAQKIGVKPEDIVMVSIMPCTAKKDEITRPQQLV-----------DGI 373
Query: 188 EIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETV 247
++ D V+TT E+ LI+LK + F L E D L L+GV +GG E
Sbjct: 374 KV--TDYVITTRELGKLIKLKGIPFVNLPEEQYDSPLGTSTGAAALFGV---TGGVMEAA 428
Query: 248 FRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVK 306
R A + L G+ + L F+++R D RE ++++G+ L K A+ +G +++ ++R++K
Sbjct: 429 LRTAYEVLTGEKLP-KLVFESVRGLDGVREAEIDIKGRKL-KVAIAHGMASVKKLLREMK 486
Query: 307 MRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPL 364
K Y FVE+MAC GC+ GGGQ K P L K + IY E +L +NP
Sbjct: 487 EGKRYYDFVEIMACLGGCIGGGGQPK---SLDPDILKKRAQAIYTIDELSVLRRSHENPD 543
Query: 365 VRSLYDEWLEQPGSEKAKKHVHTEY 389
+ LY+E+LE+P S A +HT Y
Sbjct: 544 IIKLYEEFLEKPNSHIAHHLLHTHY 568
>gi|183013539|gb|ACC38291.1| Fe-hydrogenase [Clostridium perfringens]
Length = 572
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 194/381 (50%), Gaps = 42/381 (11%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI++++P R S+ E F + Q V KL T L+ LG +FD + D+T++E E
Sbjct: 223 KHVIVAIAPAVRTSMGELFKMGYGQDVTGKLYTALRKLGFDKVFDINFGADMTIMEEATE 282
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY---ILPYISSVKSPQQTIG 133
I R K +N PML+S CP W+ +++ +Y ++ +S+ KSPQQ G
Sbjct: 283 LIERIK---------NNGPFPMLTSCCPSWV----REVENYFPELVENLSTAKSPQQIFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+ K + Q P +++ VTVMPC KK EA R + +EG I +D
Sbjct: 330 SASKTYYPQVADIDPKKVFTVTVMPCTSKKFEADRPEM-----------ENEG--IRNID 376
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+V+TT E+ +I+ ++F LE+S +D + G ++ G++GG E R A
Sbjct: 377 AVITTRELARMIKAAKIDFAKLEDSEVDPAMGEYTGAGVIF---GATGGVMEAALRTAKD 433
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ ++ +++++ +R + RE +E+ G K A+ G N+ +V+ K+ DY
Sbjct: 434 FMENDNLD-NVDYEAVRGLAGIREAEVEIAGNE-YKLAVVSGAANVFELVKSGKIN--DY 489
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRSL 368
F+EVMACP GC+NGGGQ S K I+ + L +N+ +N + +
Sbjct: 490 HFIEVMACPGGCVNGGGQPHISAEDSDKIDIREVRASVLYNQDKNLEKRKSHQNSALLKM 549
Query: 369 YDEWLEQPGSEKAKKHVHTEY 389
Y+ ++ +PG +A + +H +Y
Sbjct: 550 YENYMGKPGHGRAHELLHMKY 570
>gi|110799871|ref|YP_697035.1| iron hydrogenase [Clostridium perfringens ATCC 13124]
gi|4239873|dbj|BAA74726.1| hydrogenase [Clostridium perfringens]
gi|7959055|dbj|BAA95936.1| hydrogenase [Clostridium perfringens]
gi|110674518|gb|ABG83505.1| iron hydrogenase [Clostridium perfringens ATCC 13124]
Length = 572
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 193/381 (50%), Gaps = 42/381 (11%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI++++P R S+ E F + Q V KL T L+ LG +FD + D+T++E E
Sbjct: 223 KHVIVAMAPAVRTSMGELFKMGYGQDVTGKLYTALRELGFDKVFDINFGADMTIMEEATE 282
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY---ILPYISSVKSPQQTIG 133
I R K +N PML+S CP W+ +++ +Y ++ +SS KSPQQ G
Sbjct: 283 LIERIK---------NNGPFPMLTSCCPSWV----REVENYFPELVENLSSAKSPQQIFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + Q P +++ VTVMPC KK EA R + +EG I +D
Sbjct: 330 AASKTYYPQVADIDPKKVFTVTVMPCTSKKFEADRPEM-----------ENEG--IRNID 376
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+V+TT E+ +I+ ++F LE+ +D + G ++ G++GG E R A
Sbjct: 377 AVITTRELARMIKAAKIDFAKLEDGEVDPAMGEYTGAGVIF---GATGGVMEAALRTAKD 433
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ ++ +++++ +R + +E +E+ G K A+ G N+ +V+ K+ DY
Sbjct: 434 FMENDNLD-NVDYEAVRGLAGIKEAEVEIAGNE-YKLAVVSGAANVFELVKSGKIN--DY 489
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRSL 368
F+EVMACP GC+NGGGQ S K I+ + L +N+ +N + +
Sbjct: 490 HFIEVMACPGGCVNGGGQPHISAEDSDKMDIREVRASVLYNQDKNLEKRKSHQNSALLKM 549
Query: 369 YDEWLEQPGSEKAKKHVHTEY 389
Y+ ++ +PG +A + +H +Y
Sbjct: 550 YESYMGKPGHGRAHELLHMKY 570
>gi|373489125|ref|ZP_09579788.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Holophaga
foetida DSM 6591]
gi|372004601|gb|EHP05240.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Holophaga
foetida DSM 6591]
Length = 669
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 185/376 (49%), Gaps = 35/376 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGI--SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K VI+ ++P R+++AE FG+ ++ T L+ LG K ++DTS + DLT+ E
Sbjct: 224 KTVIVQVAPAVRSAMAEAFGLPNDTFTTMGRIVTALRRLGFKKVYDTSFTADLTIWEEAT 283
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
EFI R ++ LP+ +S CP W+ AE L IL ISS +SPQ G+
Sbjct: 284 EFINRKQK---------GGKLPLFTSCCPAWVKLAEHDL-PEILDNISSCRSPQAMFGSL 333
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
K + +LG + +++ V+VMPC KK EA R +F + P+ D V
Sbjct: 334 AKEILPGELGIQREDLVVVSVMPCTAKKFEATRPEFAVDGN-------------PDTDLV 380
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
+TT E+ +IQ + F L LD G ++ +SGG +E V R+ A
Sbjct: 381 ITTQELARMIQDAGLLFGELPVGSLDMPFGFKTGAGVIFA---NSGGVSEAVVRYVA--- 434
Query: 256 FGKVIEGHLEFKTIRNSDFREVALEVEGK-TLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
G + E + + +R+ R + LEV K ++ + YG Q +V++++ + D F
Sbjct: 435 -GHLGEENPVVQELRSDKNRRI-LEVPTKLGAIRMGVVYGLAEAQRLVKEIQAGQSDVDF 492
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLE 374
VEVMACP GC+ G GQ + ++ + + + + L P +N V+ +Y E LE
Sbjct: 493 VEVMACPGGCIGGAGQPVTHSAATREQRTQAIRRVD-AALDLHCPQENHYVKEMYSERLE 551
Query: 375 QPGSEKAKKHVHTEYH 390
P S +A +HT Y
Sbjct: 552 SPNSHQAHHLLHTHYQ 567
>gi|386347238|ref|YP_006045487.1| hydrogenase, Fe-only [Spirochaeta thermophila DSM 6578]
gi|339412205|gb|AEJ61770.1| hydrogenase, Fe-only [Spirochaeta thermophila DSM 6578]
Length = 583
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 200/378 (52%), Gaps = 38/378 (10%)
Query: 21 IISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
++ ++P R ++ E FG P + K L+ LG +IFDT+ + DLT++E +EF+
Sbjct: 227 VVQIAPAVRVAIGEAFGYEPGTLLTGKTYAALRRLGFDAIFDTNFAADLTIMEEASEFVE 286
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
R+ + +P++++ CP W+ Y EK ++P+ SS KSPQ + A +K +
Sbjct: 287 RFAHGK--------GPIPLITTCCPSWVDYLEKYYPE-MIPHFSSAKSPQMMLAAMVKTY 337
Query: 140 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
QK G P +I+ V+VMPC KK E R++ ++ Y+D+ D+ +TT
Sbjct: 338 YAQKKGIDPSKIFMVSVMPCTSKKYEIERDENMYS-----SGYKDQ-------DASITTR 385
Query: 200 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV 259
E+ +I+ ++F L + D+ L G ++GV +GG E R + GK
Sbjct: 386 ELARMIKSAGIDFHNLPDEEADQPLGIYTGAGTIFGV---TGGVMEAAVRTVYYFITGKE 442
Query: 260 IEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKM-----RKCDYQ 313
+E +E+ IR D +E L+++G T ++ A+ + N+Q ++ +VK ++ Y
Sbjct: 443 ME-KVEYTPIRGLDGVKEATLDIDG-TQVRIAVAHSISNVQYVLDRVKQALQEGKEPPYH 500
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDE 371
F+EVMAC GC+ GGGQ G + + K IY E + +NP ++ LY+E
Sbjct: 501 FIEVMACRGGCVGGGGQPY---GATDEIRAKRAAGIYTDDERSVYRCSHQNPAIKQLYEE 557
Query: 372 WLEQPGSEKAKKHVHTEY 389
+LE+P SEKA K++HT Y
Sbjct: 558 FLEKPLSEKAHKYLHTHY 575
>gi|306821642|ref|ZP_07455240.1| ferredoxin hydrogenase [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304550387|gb|EFM38380.1| ferredoxin hydrogenase [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 578
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 192/377 (50%), Gaps = 35/377 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI+ ++P R +L E FG+ P + K+ LK LG +FDT+ + DLT++E +E
Sbjct: 226 KTVIVQVAPAVRVALGEEFGMEPGTIVTGKMINALKYLGFDKVFDTNFAADLTIMEEASE 285
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ R + LP+L+S CP W+ + E Q + L S+ KSP + GA
Sbjct: 286 FVHRLN---------NGGKLPILTSCCPSWVNFFEHQFTDF-LDIPSTCKSPHEMFGAIA 335
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K ++ QKL P + V+VMPC KK EAAR E G +VD V+
Sbjct: 336 KTYLAQKLNIDPKNMVLVSVMPCVAKKYEAAR----------PELGNGAG---KDVDYVI 382
Query: 197 TTGEVLDLIQLKAVNFEAL-EESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
TT E+ +I+ +NF L +++ D + G ++ G++GG E R A + +
Sbjct: 383 TTRELALMIKEAGINFGELGDDAEFDNPMGASTGAGVIF---GATGGVIEATVRTAYEWI 439
Query: 256 FGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
G + LEF+ +R + ++ ++++G+ ++ A+ G N + ++ ++ + +
Sbjct: 440 TGNELP-KLEFEELRGLEGIKQTTVDIDGRP-IRIAVANGLGNTRRLLNMIRDNEAHFDA 497
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEW 372
+EVMACP GC+ G GQ P + + K + IY + + +NP++ LY E+
Sbjct: 498 IEVMACPGGCVGGAGQ--PYHKGNLDVIRKRAQGIYKADRDNKIRKSHENPMIIQLYKEF 555
Query: 373 LEQPGSEKAKKHVHTEY 389
L +P SEKA + +HT Y
Sbjct: 556 LGEPYSEKAHELLHTSY 572
>gi|326202424|ref|ZP_08192293.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
gi|325987542|gb|EGD48369.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
Length = 592
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 185/376 (49%), Gaps = 34/376 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI+ +P R +L E FG+ P + K+ T LK +G ++FDT DLT++E +E
Sbjct: 241 KYVIVQTAPAIRVALGELFGMEPGTIVTGKMVTALKRMGFDAVFDTDFGADLTIMEEASE 300
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI-LPYISSVKSPQQTIGAT 135
I R K +N +LP+L++ CP W+ + E Q I +P S+ KSP +G
Sbjct: 301 LIYRLK---------NNKTLPILTNCCPAWVKFIEHQFPELIHVP--STCKSPHIMLGTI 349
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
K + +K G P+ I V++MPC KK EA R + +DE VD
Sbjct: 350 AKTYYAKKNGIDPNNIVVVSIMPCIAKKAEAKRPELT----------KDEH---NNVDIS 396
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
+TT E+ +I+ + F L +S D L ++G AG G E R A++ L
Sbjct: 397 ITTRELGAMIREAGIEFTMLPDSEFDSPLGETTGASVIFGTAG---GVIEAALRTASEWL 453
Query: 256 FGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
GK +E ++F+ +R D A G LK + G N ++I+ ++ K DY +
Sbjct: 454 TGKPLE-KVDFEELRGMDGVRRATVKIGDQELKIGIASGLGNARHILEDIRDGKADYHAI 512
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWL 373
E+MACP GC+ GGGQ P + + + K +E IY E+ + +N + LY +L
Sbjct: 513 EIMACPGGCIAGGGQ--PYHHGNDEIIKKRIEAIYEEDRRKPVRKSHENKEILELYKTYL 570
Query: 374 EQPGSEKAKKHVHTEY 389
+P E A + +HT +
Sbjct: 571 GEPFGELAHELLHTHF 586
>gi|268323917|emb|CBH37505.1| putative Fe-only hydrogenase [uncultured archaeon]
Length = 569
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 128/395 (32%), Positives = 208/395 (52%), Gaps = 42/395 (10%)
Query: 3 EKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIF 60
EK +DE + I+ K V++ +P RA+L E FG++P V K+ LK G ++F
Sbjct: 206 EKPCVDEVWAAIDDPEKHVVVQEAPAIRAALGEEFGLAPGTLVSGKMHAALKRFGFDAVF 265
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + DLT++E +E + R LP ++S PGWI +AE +L
Sbjct: 266 DTNFTADLTIMEEGSELVKRIN---------GGGVLPQITSCSPGWIKFAE-HFYPDLLD 315
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+IS+ KSPQQ G+ K + +K P +I V+VMPC KK EA+R + +
Sbjct: 316 HISTCKSPQQMFGSLAKTYYAEKADMDPKKIVSVSVMPCTAKKFEASRPEM------SDS 369
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
Y+D VD VLTT E+ +I+ ++F +L + + ++ G ++G ++
Sbjct: 370 GYQD-------VDYVLTTRELARMIKEAGIDFASLPDEEAEPLMGMYTGAGTIFG---AT 419
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQ 299
GG E R A K + GK +E +L+ +R + +E ++V+G + K A+ +G N +
Sbjct: 420 GGVMEAALRTAYKLVTGKELE-NLDITPVRGMAGIKEATVDVDGLEV-KVAVAHGLGNAR 477
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL-ETIYLENVMLAD 358
++ V++ K Y F+E+MACP GC+ GGGQ P L T +T+Y E+ L
Sbjct: 478 KLLDTVRVGKSPYHFIEIMACPGGCVGGGGQ----PISFDMALRSTRGQTLYNEDAKL-- 531
Query: 359 PFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
P++ NP ++ LY+E+L +P EK+ +HT Y
Sbjct: 532 PYRKSHENPSIKRLYEEYLGEPLGEKSHHLLHTRY 566
>gi|18073435|emb|CAC83291.1| Fe-hydrogenase ['Chlorella' fusca]
gi|21732235|emb|CAC83290.1| Fe-hydrogenase ['Chlorella' fusca]
Length = 436
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 127/406 (31%), Positives = 199/406 (49%), Gaps = 40/406 (9%)
Query: 4 KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDT 62
+Q+LDE + +I ++ R ++AE G++P V +L T L+ LG +FDT
Sbjct: 42 QQALDELAKPKESRRLMIAQIASAVRVAIAETIGLAPGDVTIGQLVTGLRMLGFDYVFDT 101
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
DLT++E E + R + E + LPM +S CPGW+ EK ++PY+
Sbjct: 102 LFGADLTIMEEGTELLHRLQDHLEQHPNKEEP-LPMFTSCCPGWVAMVEKS-NPELIPYL 159
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
SS KSPQ +GA IK++ Q++G +P +I +V+VMPC K+ EA RE F
Sbjct: 160 SSCKSPQMMLGAVIKNYYAQQVGVQPSDICNVSVMPCVRKQGEADREWF---------NT 210
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 242
GL +VD V+TT EV + + + L ES D + L+ G++GG
Sbjct: 211 TGAGLAR-DVDHVVTTAEVGKIFLERGIKLNELPESNFDNPIGEGTGGALLF---GTTGG 266
Query: 243 YAETVFRHAAKTLFGKVIEGHLEFKTIR----------------NSDFREVALEVEGKTL 286
E R + + K + G ++F+ +R +S F+ A
Sbjct: 267 VMEAALRTVYEVVTQKPM-GRVDFEEVRGLEGIKEAEITLKPGDDSPFKAFAGADGQGIT 325
Query: 287 LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI-KT 345
LK A+ G N + +++ + K Y F+EVMACP GC+ GGGQ P + K+++ K
Sbjct: 326 LKIAVANGLGNAKKLIKSLSEGKAKYDFIEVMACPGGCIGGGGQ----PRSTDKQILQKR 381
Query: 346 LETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ +Y E + NP +++LYD++L P S KA +HT Y
Sbjct: 382 QQAMYNLDERSTIRRSHDNPFIQALYDKFLGAPNSHKAHDLLHTHY 427
>gi|386041555|ref|YP_005960509.1| NADH:ubiquinone oxidoreductase subunit [Paenibacillus polymyxa M1]
gi|343097593|emb|CCC85802.1| NADH:ubiquinone oxidoreductase subunit [Paenibacillus polymyxa M1]
Length = 500
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 190/391 (48%), Gaps = 34/391 (8%)
Query: 6 SLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDT 62
SL++ + K G+ I+ +P R SLAE FG+ P K+ L+ LG ++DT
Sbjct: 114 SLNKVADMMKKPGQLRIVQCAPAIRVSLAEEFGM-PFGTLTPGKMAAALRRLGFDRVYDT 172
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
+ D+T++E E I R + LPM +S CP W+ +AE + +L ++
Sbjct: 173 NFGADVTIMEEGTELIRRVTE---------GGPLPMFTSCCPAWVRFAEIEYPD-LLDHL 222
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
SS KSP Q +GA +K + Q P IY V +MPC K+ E R + + + Y
Sbjct: 223 SSCKSPMQMVGALVKTYGAQLDEVEPANIYSVAIMPCTCKQFECDRPEM------ESDGY 276
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 242
RD VD VLTT E+ I+ + ++F L + D L G ++GV +GG
Sbjct: 277 RD-------VDEVLTTRELAYWIKQQGIDFMNLPDEEFDAPLGQYSGAGTIFGV---TGG 326
Query: 243 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIV 302
E R + L + + L+ +R + VA G+ LK A+ G Q+ ++
Sbjct: 327 VMEAAIRTGYELLTNEKLP-KLQLDFVRGEEGIRVAEVQVGELQLKVAVVAGLQHAYQLL 385
Query: 303 RKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE-TIYLENV--MLADP 359
+V+ +CDY F+EVM CP+GC++GGGQ K + E + + +IY + +
Sbjct: 386 DRVQAGECDYHFIEVMGCPAGCISGGGQPKLMLEKQKIEAYRARKSSIYGHDAASQVRKS 445
Query: 360 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
+NP + LYDE+L +P + +HT +
Sbjct: 446 HENPFIIKLYDEFLGEPLGHVSHHLLHTTFQ 476
>gi|153953475|ref|YP_001394240.1| Fe-Fe hydrogenase 2 [Clostridium kluyveri DSM 555]
gi|146346356|gb|EDK32892.1| Predicted Fe-Fe hydrogenase 2 [Clostridium kluyveri DSM 555]
Length = 457
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 193/393 (49%), Gaps = 41/393 (10%)
Query: 5 QSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDT 62
+++ E L N + K I+ +P R ++ E FG+ P K+ L+ +G ++DT
Sbjct: 90 KNVKEILRNTDVFK--IVQCAPAVRVAIGEEFGL-PFGTLSEGKMAVVLRKIGFDRVYDT 146
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
+ DLT++E +E + R + +LPM +S CP W+ Y E Q +LP++
Sbjct: 147 NFGADLTIMEEGSELLDRITKG---------GTLPMFTSCCPAWVKYME-QTYPELLPHL 196
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
SS KSPQQ GA K + + P +IY+V VMPC K+ E+ RE+
Sbjct: 197 SSCKSPQQMAGAIFKSYGAEINKVNPAKIYNVAVMPCTCKEFESEREEMSCN-------- 248
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 242
E VD V+TT E+ LI+ ++F L + D +L G ++G S+GG
Sbjct: 249 -----EYRSVDIVITTRELAHLIKDADIDFNTLSDDKFDDVLGMYTGAGTIFG---STGG 300
Query: 243 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNI 301
E R + K I +E IR FR +E+ G LK + G ++++ +
Sbjct: 301 VMEAALRTGYELYTKKSIP-KIELTDIRGGQGFRTAEVEL-GDFKLKVGIVSGLKHVKKV 358
Query: 302 VRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK-PGQSPKELIKTLETIYLENVMLADPF 360
+ +K KCD F+EVM CP GC++GGGQ PK +S K + L N + P+
Sbjct: 359 LDMIKKGKCDMHFIEVMTCPEGCVSGGGQ--PKIIFESDKNIAYDARKRGLYNHDSSLPY 416
Query: 361 K----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ NP ++ LY E+L +P K+ + +HT+Y
Sbjct: 417 RKSHENPGIQKLYSEFLGEPLGYKSHELLHTKY 449
>gi|320354002|ref|YP_004195341.1| hydrogenase, Fe-only [Desulfobulbus propionicus DSM 2032]
gi|320122504|gb|ADW18050.1| hydrogenase, Fe-only [Desulfobulbus propionicus DSM 2032]
Length = 533
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 120/404 (29%), Positives = 198/404 (49%), Gaps = 29/404 (7%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIF 60
E+ ++ L I +K VI+ +P +R ++ E FG+ + + K+ LK LG +F
Sbjct: 129 ERDDIERVLKVISDKNLHVIVQTAPATRIAIGEEFGMPAGSIVEGKMVAALKLLGFDRVF 188
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSN---SSLPMLSSACPGWICYAEKQLGSY 117
DT+ S DLT++E E + R K + + ++LP +S PGW+ + E
Sbjct: 189 DTNFSADLTIMEEGTELVNRIKAAGGHGEGGHGHAPTALPQFTSCSPGWVKFCE-YFYPD 247
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+L ++S+ KSPQQ +G+ K + +K G P +I V++MPC KK EAAR +
Sbjct: 248 LLDHMSTCKSPQQMLGSVAKTYYAKKKGIDPKQIVSVSIMPCTAKKFEAARGEM------ 301
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
E+ +VD VLTT E+ +I+ K ++ L+ P D ++ ++
Sbjct: 302 NSAGIMAGTPELRDVDFVLTTRELARMIKGKGIDLAKLDPQPYDSLMGEGTGAAVIF--- 358
Query: 238 GSSGGYAETVFRHAAKTLFGK-VIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGF 295
++GG E R L G+ E L +R +E +LEV G L+ A+ G
Sbjct: 359 AATGGVMEAAIRSGYYLLTGENPPEALLNLAAVRGLQGVKEASLEVPGVGELRVAVASGL 418
Query: 296 QNLQNIVRKVKM-----RKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIK--TLET 348
N + ++ +++ R Y F+E MACP GC++GGGQ PK P + ++ L++
Sbjct: 419 ANGRQLLDQIRADKQAGRPPRYHFIEFMACPGGCISGGGQ--PKTSVPPSDWVRQERLKS 476
Query: 349 IYLENVMLAD---PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
IY + + +N V LY ++L +P E A K +HT Y
Sbjct: 477 IYTIDAKIYKKRLSHENKEVMDLYADYLGKPNGEMAHKLLHTTY 520
>gi|18311328|ref|NP_563262.1| iron hydrogenase [Clostridium perfringens str. 13]
gi|4239897|dbj|BAA74738.1| hydrogenase [Clostridium perfringens]
gi|18146011|dbj|BAB82052.1| hydrogenase [Clostridium perfringens str. 13]
Length = 572
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 193/381 (50%), Gaps = 42/381 (11%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI++++P R S+ E F + Q V KL T L+ LG +FD + D+T++E E
Sbjct: 223 KHVIVAMAPAVRTSMGELFKMGYGQDVTGKLYTALRELGFDKVFDINFGADMTIMEEATE 282
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY---ILPYISSVKSPQQTIG 133
I R K +N PML+S CP W+ +++ +Y ++ +SS KSPQQ G
Sbjct: 283 LIERIK---------NNGPFPMLTSCCPSWV----REVENYFPELVENLSSAKSPQQIFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + Q P +++ VTVMPC KK EA R + +EG I +D
Sbjct: 330 AASKTYYPQVADIDPKKVFTVTVMPCTSKKFEADRPEM-----------ENEG--IRNID 376
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+V+TT E+ +I+ ++F LE+ +D + G ++ G++GG E R A
Sbjct: 377 AVITTRELARMIKAAKIDFAKLEDGEVDPAMGEYTGAGVIF---GATGGVMEAALRTAKD 433
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ ++ +++++ +R + +E +E+ G K A+ G N+ +V+ K+ DY
Sbjct: 434 FMENDNLD-NVDYEAVRGLAGIKEAEVEIAGNE-YKLAVVSGAANVFELVKSGKIN--DY 489
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRSL 368
F+EVMACP GC+NGGGQ S K I+ + L +N+ +N + +
Sbjct: 490 HFIEVMACPGGCVNGGGQPHISAEDSDKIDIREVRASVLYNQDKNLEKRKSHQNSALLKM 549
Query: 369 YDEWLEQPGSEKAKKHVHTEY 389
Y+ ++ +PG +A + +H +Y
Sbjct: 550 YENYMGKPGHGRAHELLHMKY 570
>gi|118444478|ref|YP_878332.1| hydrogenase [Clostridium novyi NT]
gi|118134934|gb|ABK61978.1| hydrogenase [Clostridium novyi NT]
Length = 579
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 123/396 (31%), Positives = 191/396 (48%), Gaps = 39/396 (9%)
Query: 3 EKQSLDEFLSNINKGKA-VIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIF 60
E +D L IN K VI++++P RAS+ E F +S V KL T L+ LG IF
Sbjct: 213 ETPHIDRVLDAINNPKKHVIVAIAPSVRASIGEAFNMSYGTDVTYKLYTALRKLGFDKIF 272
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
D + DLT++E E + R K +N PM +S C W+ AE +LP
Sbjct: 273 DLNFGADLTIVEEAEELVERIK---------NNGPYPMFTSCCSAWVRQAENYFKE-LLP 322
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+SS KSPQQ GA K + + P +++ VT+MPC KK EA R++
Sbjct: 323 NLSSTKSPQQIFGAASKTYYPHLMNLDPKDVFTVTIMPCTAKKFEAQRDEMAVN------ 376
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
+ +D+VLT E++ +I+ K ++F LE D + G ++ G++
Sbjct: 377 -------GVDSIDAVLTARELIKIIKDKKIDFPNLENGVQDPAMGEYSGAGAIF---GAT 426
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQ 299
GG E R A + L K ++ ++++K +R +E + + K A+ G N+
Sbjct: 427 GGVMEAALRTAKELLENKSLD-NIDYKEVRGFKGIKETTVTINNKE-YNLAVINGSSNVF 484
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI--KTLETIYLENVMLA 357
+ MRK Y F+EVM+C GC+NGGG P + +EL+ K L + L N L
Sbjct: 485 KFINSDMMRKKQYHFIEVMSCEGGCINGGGH--PHVNSTTRELVDYKKLRSSVLYNQDLN 542
Query: 358 DP----FKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
P +N + +YD ++ +PG++ A K H Y
Sbjct: 543 LPKRKSHENTAIIKMYDNFIGKPGNDFAHKIFHFSY 578
>gi|313900506|ref|ZP_07833999.1| putative ferredoxin hydrogenase [Clostridium sp. HGF2]
gi|373124465|ref|ZP_09538306.1| hydrogenase, Fe-only [Erysipelotrichaceae bacterium 21_3]
gi|422326519|ref|ZP_16407547.1| hydrogenase, Fe-only [Erysipelotrichaceae bacterium 6_1_45]
gi|312954568|gb|EFR36243.1| putative ferredoxin hydrogenase [Clostridium sp. HGF2]
gi|371659433|gb|EHO24698.1| hydrogenase, Fe-only [Erysipelotrichaceae bacterium 21_3]
gi|371666098|gb|EHO31255.1| hydrogenase, Fe-only [Erysipelotrichaceae bacterium 6_1_45]
Length = 577
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 200/385 (51%), Gaps = 35/385 (9%)
Query: 10 FLSNINKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDL 68
F + + K I+ ++P RA+ E G+ + +KL + +G +FDT + DL
Sbjct: 213 FAAFNDPDKITIVQIAPAVRAAWGESLGLRREEATIEKLGDAFRRMGADYVFDTDFAADL 272
Query: 69 TLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSP 128
T++E +EF+ R ++E + +PM +S CPGW+ + + Q ++ ++S+ KSP
Sbjct: 273 TIMEEASEFLERLHHNKEQE-------MPMFTSCCPGWVRFLKSQYPD-MVSHLSTSKSP 324
Query: 129 QQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE 188
Q GA K +KLG P IY+++VMPC KK E D DS YRD
Sbjct: 325 HQMFGAVTKTWFAEKLGVDPSSIYNISVMPCVAKKHEI---DIPVMNDS---GYRD---- 374
Query: 189 IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVF 248
VD VLTT EV+ +I + ++ L++ PLD L G ++ G++GG E
Sbjct: 375 ---VDVVLTTREVVRMIHAEHIDVGYLQDHPLDDPLGTASGAGVIF---GATGGVMEAAL 428
Query: 249 RHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKM 307
R A + G+ + F +R D ++E E++G ++ A+ G N + ++ ++
Sbjct: 429 RSAYYFVTGENADAD-AFADVRGMDGWKESTFEIQG-IPVRCAIVSGLGNTRRLIEAMRR 486
Query: 308 RKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYL--ENVMLADPFKNPL 364
++ Y F+EVMACP GC GGGQ P +EL + +T+Y N L +NP
Sbjct: 487 KEVAYDFIEVMACPGGCSGGGGQ----PIHDGEELAAERADTLYHLDRNAKLRYSHENPS 542
Query: 365 VRSLYDEWLEQPGSEKAKKHVHTEY 389
+ +LYDE+L +P SE A+K +HT++
Sbjct: 543 IHALYDEYLGKPLSELAEKLLHTDH 567
>gi|239616580|ref|YP_002939902.1| hydrogenase, Fe-only [Kosmotoga olearia TBF 19.5.1]
gi|239505411|gb|ACR78898.1| hydrogenase, Fe-only [Kosmotoga olearia TBF 19.5.1]
Length = 584
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 124/386 (32%), Positives = 202/386 (52%), Gaps = 35/386 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K +++ +P R +L E FG P + K+ L+ LG +FDT + DLT++E +E
Sbjct: 222 KVLVVQTAPAVRVALGEEFGEEPGTISTGKMVAALRKLGFDYVFDTDFAADLTIMEEGSE 281
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R K+ PM +S CPGW+ EK L +S+ KSP + +GA I
Sbjct: 282 LLQRIKE---------GGKFPMFTSCCPGWVNLMEK-LYPEFRENLSTAKSPHEMLGALI 331
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +K+G P +I+ V+VMPC KK EA RE + + VD+V+
Sbjct: 332 KTYFAKKIGKDPKDIFVVSVMPCTAKKDEAERETLLVRGHVA-------------VDAVI 378
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ LI++K + +E+L E D L ++G ++GG E R A +
Sbjct: 379 TTRELGKLIKMKKIPYESLPEEEYDTPLGISTGAAVIFG---ATGGVMEAALRTAYELYT 435
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
GK + L+F+ +R + +E ++++GK +LK A+ +G N+ ++ K+K + Y FV
Sbjct: 436 GKELP-KLDFEFVRGFEGVKEAEVDLDGK-ILKVAVAHGGANVVKLMDKIKSGEVYYDFV 493
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWL 373
E+MACP GC+ GGGQ K P L + ++ IY EN+ + +NP ++ +Y+E+L
Sbjct: 494 EIMACPGGCIGGGGQPK---STRPDYLERRMQAIYEIDENMPIRKSHENPAIKKIYEEYL 550
Query: 374 EQPGSEKAKKHVHTEYHPVVKSITAQ 399
E P S + + +HT Y KS+ +
Sbjct: 551 EHPLSHISHELLHTHYLDRKKSVVER 576
>gi|226290159|gb|EEH45643.1| iron-sulfur cluster assembly associated protein Nar1
[Paracoccidioides brasiliensis Pb18]
Length = 629
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 177/369 (47%), Gaps = 60/369 (16%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCSR 66
K I S+SPQ RASLA FGIS + + FL G + DT+ R
Sbjct: 127 KIFIASVSPQVRASLAATFGISERKAGYLIEQFLSGPQGLRAGGAHGSGFTWVVDTNVMR 186
Query: 67 DLTLIEACNEFIARYKQSQE--SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
++ L E + S S +E P+LSS CPGWICYAEK ++LP++S
Sbjct: 187 NVCLELGVTEVKESLEISGNTISGEEFPVPKRPILSSICPGWICYAEKT-HPHVLPHMSR 245
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
+KSPQ G +K + + L P I+H+ +MPC+DKKLEA+R++ Q ++ +
Sbjct: 246 IKSPQALTGTLLKSVLRKALNISPCHIWHLAIMPCFDKKLEASRQELT-NASWQGLSWTE 304
Query: 185 EGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL-DKMLTNVDD---EGHLY------ 234
+ +VD V+T+ E+L L + ++ L PL +T D E L+
Sbjct: 305 SHTPVRDVDCVITSRELLMLATSRNISLLNLPMKPLPPSSITPFPDTYLERFLFPKSLPH 364
Query: 235 ---GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GKTLLKFA 290
AG SGGY H T + H++ + RNSD E AL G T++K A
Sbjct: 365 AQCPAAGPSGGY----LYHILTTYQRRNPGSHIQTQRGRNSDVIEYALTSNSGDTIIKAA 420
Query: 291 LCYGFQNLQNIVRKVK--------------MRK-------------CDYQFVEVMACPSG 323
YGF+N+QN+VRK+K RK DY ++EVMACP G
Sbjct: 421 RYYGFRNIQNLVRKLKPPRTSRLPGAKPIIARKAAGAGSAAGNASVTDYSYIEVMACPGG 480
Query: 324 CLNGGGQIK 332
C NGGGQI+
Sbjct: 481 CTNGGGQIR 489
>gi|85858940|ref|YP_461142.1| iron only hydrogenase large subunit [Syntrophus aciditrophicus SB]
gi|85722031|gb|ABC76974.1| iron only hydrogenase large subunit [Syntrophus aciditrophicus SB]
Length = 605
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 198/398 (49%), Gaps = 42/398 (10%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKS 58
+ EK +DE + + + V++ +P RA+L E FG+ P V K+ L+ LG
Sbjct: 213 LYEKDQVDEVWKALQDPTRHVVVQEAPAIRAALGEEFGMPPGSLVTGKMIAALRRLGFDK 272
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ + DLT+IE NE + R K+ +LPM++S PGWI + E +
Sbjct: 273 VFDTNFTADLTIIEEGNELLKRVKE---------GGTLPMITSCSPGWIKFCE-HFYPDL 322
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L ++S+ KSPQQ GA K + Q G P I+ V++MPC KK EA R + +
Sbjct: 323 LGHLSTCKSPQQMFGALAKTYYAQVSGIDPANIFSVSIMPCTAKKYEAQRPEM------K 376
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA- 237
Y+D VD VLTT E+ +I+ ++F L + D D G G A
Sbjct: 377 SSGYQD-------VDVVLTTRELARMIKEAGIDFVNLPDEKYD------DPMGEYTGAAT 423
Query: 238 --GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYG 294
G++GG E R + G+ + L +R + A+ V +K A+ +G
Sbjct: 424 IFGATGGVMEAALRTVYAVVTGEELS-DLNIMPVRGLEGVKAAAVPVGALGDVKVAVAHG 482
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV 354
N + ++ +++ K +Y F+EVM CP GC+ GGG+ P P +++ +Y ++
Sbjct: 483 LGNARKLLDEIRAGKSEYAFIEVMCCPGGCVAGGGE--PIPTTDEIRMLRA-GALYRDDG 539
Query: 355 MLA---DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ ++P V+++Y+++L++P K+ + +HT Y
Sbjct: 540 EVQQYRQSHQSPPVKAVYEKFLKEPLGHKSHELLHTHY 577
>gi|225410187|ref|ZP_03761376.1| hypothetical protein CLOSTASPAR_05409 [Clostridium asparagiforme
DSM 15981]
gi|225042291|gb|EEG52537.1| hypothetical protein CLOSTASPAR_05409 [Clostridium asparagiforme
DSM 15981]
Length = 683
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 125/377 (33%), Positives = 200/377 (53%), Gaps = 25/377 (6%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K VI+S SP RA+L E FG+ V K+ + L++LG + DT+ + DLT++E +E
Sbjct: 99 KIVIMSTSPSVRAALGEEFGMGSAFVQGKMVSLLRALGADYVLDTNFAADLTILEEASEL 158
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
I R + N LP +S CP W+ +AE +L +ISS KSP G TIK
Sbjct: 159 IERVT--------KGNKPLPQFTSCCPAWVKFAEIYYPD-MLDHISSAKSPIGMQGPTIK 209
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE-IPEVDSVL 196
+ +K+G P I +V V PC KK E RE+ S Y G+E + ++D V+
Sbjct: 210 TYFAKKMGIDPRTIVNVAVTPCTAKKYEIRREEM-----SAAGKYL--GIEDMRDMDYVI 262
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ + V+FEALE+ D+++ G ++G ++GG E R A + +
Sbjct: 263 TTRELAQWAREAEVDFEALEDGTYDRLMGEGSGAGVIFG---NTGGVMEAALRTAYEYIT 319
Query: 257 G-KVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
G K + + + +R + +E +L+V G T+ A+ +G N+++ +R++K Y F
Sbjct: 320 GEKAPQVLYQLEPVRGLEAVKEASLQVGGLTV-NVAVIFGTANVRSFIRRMKEGGKQYHF 378
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEW 372
VEVM CP GC+ GGGQ K K + + +E++Y + + + +N ++ LY E+
Sbjct: 379 VEVMTCPGGCIGGGGQPKDKEFEGDALRARRIESLYGRDRSMTVRASHENEEIKELYHEF 438
Query: 373 LEQPGSEKAKKHVHTEY 389
QP SE A++ +HT Y
Sbjct: 439 YGQPLSELAEQMLHTGY 455
>gi|218133997|ref|ZP_03462801.1| hypothetical protein BACPEC_01887 [[Bacteroides] pectinophilus ATCC
43243]
gi|217991372|gb|EEC57378.1| hydrogenase, Fe-only [[Bacteroides] pectinophilus ATCC 43243]
Length = 573
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 126/398 (31%), Positives = 201/398 (50%), Gaps = 39/398 (9%)
Query: 1 MLEKQSLDEFLSNINKGKAV-IISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKS 58
+ EK + + L+ +N + + ++ ++P R + E G+ + K+L + L+ +G
Sbjct: 203 LREKDDIGKVLAALNDPETITVVQVAPAVRTAWGEDLGMPGDVATEKRLASVLRHIGFDY 262
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT++E NEFI R K +S LPM +S CPGW+ + + Q ++
Sbjct: 263 VFDTNFSADLTIMEEGNEFIERLKNPDKS-------RLPMFTSCCPGWVRFVKSQYPEFV 315
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+S+ KSPQQ GA +K + +K P I V++MPC KK EAA ++ Q
Sbjct: 316 -DNLSTAKSPQQMFGAVVKSYFAKKADIDPSRICSVSIMPCTAKKAEAAYDNMSSAGYGQ 374
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+ VD VLTT E L++ +A+ EAL E D L G ++G
Sbjct: 375 D------------VDYVLTTREFARLVRGEAIIPEALPEEDFDSPLGTYSGAGVIFG--- 419
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
++GG E R A + GK + F +R + ++E A V G + + A +G N
Sbjct: 420 ATGGVMEAALRSAFYLVTGKNPDAD-AFSAVRGMNPWKEAAFNVGGNEI-RTATVHGLGN 477
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL-----E 352
+ ++ +K + Y FVEVMACP GC+ GGGQ P + +EL K I +
Sbjct: 478 TRQLLDAIKRGEVKYDFVEVMACPGGCVGGGGQ----PIRDGQELAKDRAPILYSLDRSK 533
Query: 353 NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
N+ + +NP V +Y+E+ E+P S A K +HT++H
Sbjct: 534 NIRFS--HENPDVLKMYEEFFEKPNSPVAHKLLHTDHH 569
>gi|225682723|gb|EEH21007.1| iron-sulfur cluster assembly associated protein Nar1
[Paracoccidioides brasiliensis Pb03]
Length = 629
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 177/369 (47%), Gaps = 60/369 (16%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCSR 66
K I S+SPQ RASLA FGIS + + FL G + DT+ R
Sbjct: 127 KIFIASVSPQVRASLAATFGISERKAGYLIEQFLSGPQGLRAGGAHGSGFTWVVDTNVMR 186
Query: 67 DLTLIEACNEFIARYKQSQE--SDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
++ L E + S S +E P+LSS CPGWICYAEK ++LP++S
Sbjct: 187 NVCLELGVTEVKESLEISGNTISGEEFPVPKRPILSSICPGWICYAEKT-HPHVLPHMSR 245
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
+KSPQ G +K + + L P I+H+ +MPC+DKKLEA+R++ Q ++ +
Sbjct: 246 IKSPQALTGTLLKSVLRKALNISPCHIWHLAIMPCFDKKLEASRQELT-NASWQGLSWTE 304
Query: 185 EGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL-DKMLTNVDD---EGHLY------ 234
+ +VD V+T+ E+L L + ++ L PL +T D E L+
Sbjct: 305 SHTPVRDVDCVITSRELLMLATSRNISLLNLPMKPLPPSSITPFPDTYLERFLFPKSLPH 364
Query: 235 ---GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GKTLLKFA 290
AG SGGY H T + H++ + RNSD E AL G T++K A
Sbjct: 365 AQCPAAGPSGGY----LYHILTTYQRRNPGSHIQTQRGRNSDVIEYALTSNSGDTIIKAA 420
Query: 291 LCYGFQNLQNIVRKVK--------------MRK-------------CDYQFVEVMACPSG 323
YGF+N+QN+VRK+K RK DY ++EVMACP G
Sbjct: 421 RYYGFRNIQNLVRKLKPPRTSRLPGAKPIIARKAAGAGSAAGNASVTDYSYIEVMACPGG 480
Query: 324 CLNGGGQIK 332
C NGGGQI+
Sbjct: 481 CTNGGGQIR 489
>gi|219854097|ref|YP_002471219.1| hypothetical protein CKR_0754 [Clostridium kluyveri NBRC 12016]
gi|219567821|dbj|BAH05805.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 466
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 193/393 (49%), Gaps = 41/393 (10%)
Query: 5 QSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDT 62
+++ E L N + K I+ +P R ++ E FG+ P K+ L+ +G ++DT
Sbjct: 99 KNVKEILRNTDVFK--IVQCAPAVRVAIGEEFGL-PFGTLSEGKMAVVLRKIGFDRVYDT 155
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
+ DLT++E +E + R + +LPM +S CP W+ Y E Q +LP++
Sbjct: 156 NFGADLTIMEEGSELLDRITKG---------GTLPMFTSCCPAWVKYME-QTYPELLPHL 205
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
SS KSPQQ GA K + + P +IY+V VMPC K+ E+ RE+
Sbjct: 206 SSCKSPQQMAGAIFKSYGAEINKVNPAKIYNVAVMPCTCKEFESEREEMSCN-------- 257
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 242
E VD V+TT E+ LI+ ++F L + D +L G ++G S+GG
Sbjct: 258 -----EYRSVDIVITTRELAHLIKDADIDFNTLSDDKFDDVLGMYTGAGTIFG---STGG 309
Query: 243 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNI 301
E R + K I +E IR FR +E+ G LK + G ++++ +
Sbjct: 310 VMEAALRTGYELYTKKSIP-KIELTDIRGGQGFRTAEVEL-GDFKLKVGIVSGLKHVKKV 367
Query: 302 VRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPK-PGQSPKELIKTLETIYLENVMLADPF 360
+ +K KCD F+EVM CP GC++GGGQ PK +S K + L N + P+
Sbjct: 368 LDMIKKGKCDMHFIEVMTCPEGCVSGGGQ--PKIIFESDKNIAYDARKRGLYNHDSSLPY 425
Query: 361 K----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ NP ++ LY E+L +P K+ + +HT+Y
Sbjct: 426 RKSHENPGIQKLYSEFLGEPLGYKSHELLHTKY 458
>gi|225559785|gb|EEH08067.1| nuclear prelamin A recognition factor-like protein [Ajellomyces
capsulatus G186AR]
Length = 591
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 176/377 (46%), Gaps = 66/377 (17%)
Query: 17 GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-----------GVKSIFDTSCS 65
GK + S+SPQ+RASLA +GIS + + FL G + DT+
Sbjct: 85 GKIFVASVSPQARASLAATYGISEREAGYLIEQFLSGPEGLRAGGAYGNGFTWVIDTNVM 144
Query: 66 RDLTLIEACNEFIARYKQSQESDDER-SNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
R + L + +E S+++ E P+LSSACPGWICYAEK ++LP+IS
Sbjct: 145 RQVCLELSVSEVTESLNSSKDTLTETFPAPKRPVLSSACPGWICYAEKT-HPHVLPHISR 203
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
+KSPQ G +K + + L +I+H+ +MPC+DKKLEA+R++ +
Sbjct: 204 LKSPQALTGTLVKTVLSKALNISSSQIWHLAIMPCFDKKLEASRQELTDASWQDASSMTQ 263
Query: 185 EGLE-------IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLY--- 234
+G + +VD V+T+ E+L L + ++ L PL + + +
Sbjct: 264 KGHSPTESYSPVRDVDCVITSRELLMLATSRNISLRNLPLQPLPSPFVPLFPDPYFAPFL 323
Query: 235 ----------GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEG 283
AG+SGGY H T + ++ + RNSD E AL G
Sbjct: 324 FPKSSQFVQPSAAGTSGGY----LYHILTTYQHRNPGSQIQTQRGRNSDVIEYALISPSG 379
Query: 284 KTLLKFALCYGFQNLQNIVRKVKMRKC----------------------------DYQFV 315
T++K A YGF+N+QN+VRK+K + DY ++
Sbjct: 380 ATIIKAARYYGFRNIQNLVRKLKPPRASRLPGANPMIGRRAGGGCAATVNSTSATDYAYI 439
Query: 316 EVMACPSGCLNGGGQIK 332
EVMACP GC NGGGQI+
Sbjct: 440 EVMACPGGCTNGGGQIR 456
>gi|293376714|ref|ZP_06622937.1| putative ferredoxin hydrogenase [Turicibacter sanguinis PC909]
gi|325845179|ref|ZP_08168487.1| ferredoxin hydrogenase [Turicibacter sp. HGF1]
gi|292644671|gb|EFF62758.1| putative ferredoxin hydrogenase [Turicibacter sanguinis PC909]
gi|325488775|gb|EGC91176.1| ferredoxin hydrogenase [Turicibacter sp. HGF1]
Length = 590
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 122/403 (30%), Positives = 196/403 (48%), Gaps = 50/403 (12%)
Query: 3 EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQ--VFKKLTTFLKSLGVKS- 58
E ++++ + IN K V+ ++P RA+L E F + P+ V K+ L+ +G S
Sbjct: 208 EHSNINQVVEAINDPNKMVVFQVAPAVRAALGEEFNL-PIGTCVTGKIAAALRRIGGPSS 266
Query: 59 -IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT+ S DLT++E E + R +Q LPM++S PGWI AE+ +
Sbjct: 267 KVFDTNFSADLTIMEEAYELVNRIQQG---------GVLPMITSCSPGWIRLAEQYMPD- 316
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+LP++S+ KSPQQ GA +K + +K IY V+VMPC KK E RE+
Sbjct: 317 VLPHLSTCKSPQQMFGAILKSYWAEKNNIDKSSIYCVSVMPCVAKKTELKREELAVN--- 373
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
I +VD+ +TT E+ +I++ ++F AL + D+ L G ++
Sbjct: 374 ----------GIADVDASITTRELARMIRMYGLDFNALPDETFDQPLGEYSGAGTIF--- 420
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQ 296
G++GG E R AA L G+ +E +E++ +R + +E L V G L A+ +G +
Sbjct: 421 GATGGVMEAALRTAADVLSGQSLE-QIEYEAVRGVEGVKEATLTV-GDLTLNVAVIHGGK 478
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV-- 354
V ++ Y F+EVM C GC+ GGGQ P L I E
Sbjct: 479 QALETVNQLLTSDKPYHFIEVMGCSGGCVAGGGQ-----PHIPAHLFNKGLDIREERAKA 533
Query: 355 --------MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
++ +NP+++++Y E+L P S A + +HT Y
Sbjct: 534 LYEDDKAQVIRKSHENPVIQNVYAEYLGTPNSHLAHELLHTHY 576
>gi|147678345|ref|YP_001212560.1| hydrogenase subunit [Pelotomaculum thermopropionicum SI]
gi|146274442|dbj|BAF60191.1| hypothetical hydrogenase subunit [Pelotomaculum thermopropionicum
SI]
Length = 574
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 120/394 (30%), Positives = 198/394 (50%), Gaps = 36/394 (9%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIF 60
EK +D+ + + + K V++ +P +R L E G+ P + K+ L+ LG +F
Sbjct: 206 EKDDIDKVWAALADPKKHVVVQTAPATRVQLGETMGMEPGSIVTGKMVAGLRRLGFNKVF 265
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT + DLT++E NE + R K + LPM++S PGWI +AE +LP
Sbjct: 266 DTDFTADLTILEEGNELLQRIK---------TGGVLPMITSCSPGWIKFAE-HFYPDLLP 315
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
++S+ KSPQQ GA K + QK G P +I+ V++MPC KK E R +
Sbjct: 316 HLSTCKSPQQMFGALAKTYYAQKEGIDPADIFVVSIMPCTAKKFECQRPEM--------- 366
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
+D G + +VD VLT+ E+ + + +N L E D L G ++ G++
Sbjct: 367 --KDSGYQ--DVDVVLTSRELGRMFKQANINIAELPEEEYDAPLGISTGAGEIF---GAT 419
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQ 299
GG E R + + GK ++ ++ F R + +E ++V G +K A+ G N +
Sbjct: 420 GGVMEAALRTVYEVVTGKELD-NINFVECRGLTGVKEATIQV-GDLPVKIAITNGLGNAR 477
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLA 357
++ KV+ + DY F+E+M GG P P + L K ++ Y E+ ++L
Sbjct: 478 KVLDKVRAGEADYHFIEIMC--CPGGCIGGGGSPIPTNTEIRL-KRIDATYTEDERMVLR 534
Query: 358 DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
+NP V++LY+E+LE+P K+ + +HT Y P
Sbjct: 535 KSHENPAVKALYEEFLEKPLGHKSHELLHTHYTP 568
>gi|443894303|dbj|GAC71651.1| nuclear architecture related protein [Pseudozyma antarctica T-34]
Length = 698
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 119/314 (37%), Positives = 163/314 (51%), Gaps = 42/314 (13%)
Query: 20 VIISLSPQSRASLAEHFGIS------PLQVF-KKLTTFLKS-LGVKSIFDTSCSRDLTLI 71
++ S+SPQS ASL+ + + PL + +++ FL++ G ++DT+ +R + L
Sbjct: 127 LVASISPQSLASLSAKYTFNSAHPELPLDLLLHRISHFLRAQFGFDYVYDTTFARHIALQ 186
Query: 72 EACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQT 131
E NEF R S D SLPML+SACPGWICYAEK G +LPYIS+ KSPQQ
Sbjct: 187 EHTNEFFERRSNSSAGAD---GPSLPMLASACPGWICYAEKTHGE-LLPYISATKSPQQL 242
Query: 132 IGATIKHHICQKLGFRPD-EIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 190
G K + +L D +YHVTVMPCYDKKLEA+R DF ++ +
Sbjct: 243 AGVIAKRFLPHRLHLAADTTVYHVTVMPCYDKKLEASRPDFYNEVTRSK----------- 291
Query: 191 EVDSVLTTGEVLDLIQLKAVNFEAL---EESPLDKMLTNVDDEGHLYGVAG-SSGGYAET 246
+VD VLTTGE+ L+ + + E+ L T+ L G SSGGY
Sbjct: 292 DVDCVLTTGELDTLMHDQGFDITQPLPNEQDALSHPSTSAVTLPRLLDQPGSSSGGYMFA 351
Query: 247 VFR--------HAAKTLFGKVIEG----HLEFKTIRNSDFREVALE--VEGKTLLKFALC 292
+ R H A L V E L+ + IR +DF E L + L + A C
Sbjct: 352 LMRAVWADWIAHNAPRLPESVRESGVMPKLDVRVIRTADFTEYLLRDPLSSSVLFRGAQC 411
Query: 293 YGFQNLQNIVRKVK 306
YGF+NLQN+VRK++
Sbjct: 412 YGFRNLQNLVRKLQ 425
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/22 (81%), Positives = 21/22 (95%)
Query: 312 YQFVEVMACPSGCLNGGGQIKP 333
Y +VEVMACPSGC+NGGGQI+P
Sbjct: 497 YDYVEVMACPSGCVNGGGQIRP 518
>gi|255659119|ref|ZP_05404528.1| ferredoxin hydrogenase [Mitsuokella multacida DSM 20544]
gi|260848564|gb|EEX68571.1| ferredoxin hydrogenase [Mitsuokella multacida DSM 20544]
Length = 589
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 133/398 (33%), Positives = 204/398 (51%), Gaps = 32/398 (8%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
++EK ++ L + + K VI+ ++P R SL + FG+ P + ++ T L LG
Sbjct: 218 LVEKDDTEKVLDALQDPKKHVIVQVAPSVRVSLGDAFGMEPGAIVTGQMVTALHLLGFDK 277
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ DLT++E EF+ R + LPM++S CPGW+ Y EK S
Sbjct: 278 VFDTNFGADLTIMEEGTEFLDRLQH---------GGVLPMMTSCCPGWVYYVEKHY-SDC 327
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
LP++SS KSP GA K + + G +I V+VMPC KK EAAR
Sbjct: 328 LPHLSSTKSPMSIFGAVAKTYYPKVAGIDVKDIVTVSVMPCTAKKFEAARP--------- 378
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
E RD P+VD VLTT E++ LI+ ++F L E+ D L G ++G
Sbjct: 379 -ELGRDGR---PDVDIVLTTRELIKLIKYVGLSFGQLPETEFDSPLGTASGAGAIFG--- 431
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R L GK +E L+F+ R +E LE+ G+TL A+ + +N
Sbjct: 432 TTGGVMEAALRTVCDKLTGKTLE-RLDFQEARGFKGIKECTLELGGRTL-HIAIAHTLKN 489
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLA 357
+ ++ +V+ Y F+EVMACP GC+ GGGQ K+ ++ L I ++ +
Sbjct: 490 AEILMEQVRKGISPYDFIEVMACPGGCIGGGGQPIGTTNAVKKKRMQALYEID-RSLPVR 548
Query: 358 DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKS 395
+NP ++ LY ++L +PG KA + +HT Y V K+
Sbjct: 549 KSHENPELQVLYRDFLGEPGEGKAHELLHTGYRAVPKA 586
>gi|182625781|ref|ZP_02953548.1| iron hydrogenase [Clostridium perfringens D str. JGS1721]
gi|177908937|gb|EDT71424.1| iron hydrogenase [Clostridium perfringens D str. JGS1721]
Length = 572
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 193/381 (50%), Gaps = 42/381 (11%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI++++P R S+ E F + Q V KL T L+ LG +FD + D+T++E E
Sbjct: 223 KHVIVAMAPAVRTSMGELFKMGYGQDVTGKLYTALRELGFDKVFDINFGADMTIMEEATE 282
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY---ILPYISSVKSPQQTIG 133
I R K +N PML+S CP W+ +++ +Y ++ +S+ KSPQQ G
Sbjct: 283 LIERIK---------NNGPFPMLTSCCPSWV----REVENYFPELVENLSTAKSPQQIFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + Q P +++ VTVMPC KK EA R + +EG I +D
Sbjct: 330 AASKTYYPQVADIDPKKVFTVTVMPCTSKKFEADRPEM-----------ENEG--IRNID 376
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+V+TT E+ +I+ ++F LE+ +D + G ++ G++GG E R A
Sbjct: 377 AVITTRELARMIKAAKIDFAKLEDGEVDPAMGEYTGAGVIF---GATGGVMEAALRTAKD 433
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ ++ +++++ +R + +E +E+ G K A+ G N+ +V+ K+ DY
Sbjct: 434 FMENDNLD-NVDYEAVRGLAGIKEAEVEIAGNE-YKLAVVSGAANVFELVKSGKIN--DY 489
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRSL 368
F+EVMACP GC+NGGGQ S K I+ + L +N+ +N + +
Sbjct: 490 HFIEVMACPGGCVNGGGQPHISAEDSDKMDIREVRASVLYNQDKNLEKRKSHQNSALLKM 549
Query: 369 YDEWLEQPGSEKAKKHVHTEY 389
Y+ ++ +PG +A + +H +Y
Sbjct: 550 YENYMGKPGHGRAHELLHMKY 570
>gi|302392631|ref|YP_003828451.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Acetohalobium arabaticum DSM 5501]
gi|302204708|gb|ADL13386.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Acetohalobium arabaticum DSM 5501]
Length = 601
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 120/380 (31%), Positives = 187/380 (49%), Gaps = 35/380 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V+I +P R ++ E FG+ V KL + LK +G +FD D+ ++E E
Sbjct: 222 KHVVIQTAPAIRVTIGEMFGMEVGSLVTGKLVSALKRVGFDRVFDDCFGADVVVMEEGRE 281
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R + S LP +S CPGW+ + E S +L +SS KSPQQ GA
Sbjct: 282 LMERLE---------SGKDLPQFTSCCPGWVKFCESFYPS-LLDNLSSCKSPQQVFGALA 331
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +K G PD I+ V+ MPC KK EA R + D G + +VD+VL
Sbjct: 332 KTYYAEKAGIDPDNIFSVSTMPCVAKKYEAQRPEM-----------DDSGRQ--DVDAVL 378
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ ++I+ ++ E L E D+ + G ++ GS+GG E R + L
Sbjct: 379 TTRELGEMIKQIGIDIENLPEQEYDEPMGYATGAGVIF---GSTGGVMEATLRTVYEKLT 435
Query: 257 GKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVE 316
G+ +E E + +R+ DF E ++++ + A+ G N + ++ +V + DY FVE
Sbjct: 436 GERLE-DFELQKVRSQDFNEAEVKLDEDRSINVAVARGTGNARKLIHRVLSGEADYDFVE 494
Query: 317 VMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK-------NPLVRSLY 369
VMACP+G GGG G+ + + ++ +D K NP V+ LY
Sbjct: 495 VMACPAGGCVGGGGQPIYSGRDRWARMVEDRVARADGLLKSDGRKDIKVAHENPFVKELY 554
Query: 370 DEWLEQPGSEKAKKHVHTEY 389
D +LE+P EK++K +HT Y
Sbjct: 555 DSFLEKPHGEKSQKLLHTSY 574
>gi|255524302|ref|ZP_05391260.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7]
gi|296185259|ref|ZP_06853669.1| ferredoxin hydrogenase [Clostridium carboxidivorans P7]
gi|255511985|gb|EET88267.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7]
gi|296050093|gb|EFG89517.1| ferredoxin hydrogenase [Clostridium carboxidivorans P7]
Length = 580
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 190/376 (50%), Gaps = 34/376 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ +P R +L E FG+ P + K+ L+ LG + DT + D+T++E +E
Sbjct: 229 KYVVVQTAPAIRVALGEKFGMEPGTIVTGKMVAALRRLGFDKVCDTDFAADVTILEEAHE 288
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
FI R + + LP+L+S CP W+ + E Q +L S+ KSP G
Sbjct: 289 FIDRLQ---------NGGRLPILTSCCPSWVKFIEHQFPD-LLDIPSTCKSPHIMFGTLA 338
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K ++ +KL P +I V+VMPC KK E +R +L+ + E VD V+
Sbjct: 339 KTYMAEKLNIDPSKIVVVSVMPCIAKKYEISRP----ELEHEGEK---------NVDLVV 385
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ D+I ++F L + D L ++G ++GG E R A + +
Sbjct: 386 TTRELADMIMEAGIDFNKLPDEDFDNPLGESTGASVIFG---TTGGVIEAALRTAYEWIT 442
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G+ ++ +EF ++R D +E ++ + GK + + +G N + ++ +++ + Y +
Sbjct: 443 GETLK-EVEFHSVRGLDGLKEASVNIGGKEI-NIGVAHGLGNARKLLEEIESGESKYHAI 500
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWL 373
E+MACP GC++GGGQ P + K +E IY E N L +NP V++LY E++
Sbjct: 501 EIMACPGGCIDGGGQ--PYHFGDLDIVKKRMEAIYKEDRNKTLRKSHENPEVQALYKEFI 558
Query: 374 EQPGSEKAKKHVHTEY 389
+ G +KA +HT Y
Sbjct: 559 GEVGGKKAHDLLHTHY 574
>gi|381166630|ref|ZP_09875844.1| Hydrogenases, Fe-only [Phaeospirillum molischianum DSM 120]
gi|380684203|emb|CCG40656.1| Hydrogenases, Fe-only [Phaeospirillum molischianum DSM 120]
Length = 606
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 183/375 (48%), Gaps = 35/375 (9%)
Query: 21 IISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
+ +P R E FG+ P V ++ L+ LG + DT+ + D+ ++E E +
Sbjct: 236 VFQFAPAVRVGFGEEFGLPPGTNVEGRIIGALRRLGADIVLDTNFAADVVVMEESAELLG 295
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
R + P +S CP WI +AE+ +LP +SS KSPQQ +G K +
Sbjct: 296 RLAGKRR----------PTFTSCCPAWINFAERHYPD-LLPMLSSTKSPQQCLGKIAKTY 344
Query: 140 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
+ +++G P I +++MPC KK E R + G + E+D VLTT
Sbjct: 345 LPERMGIDPARIRVISIMPCTAKKDERVRPQLA-----------ENG--VSEIDVVLTTR 391
Query: 200 EVLDLIQLKAVNFEALEESPLDK-MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E L++ + ++ + E S D ++ G ++G ++GG E R + G+
Sbjct: 392 EFARLLKRQGIDLRSQEPSVFDNPYMSAYSGAGAIFG---TTGGVMEAAVRTMYQIANGR 448
Query: 259 VIEGHLEFKTIRNSD-FREVALEVEGKT-LLKFALCYGFQNLQNIVRKVKMRKCDYQFVE 316
+ +E +R D R +EV G +K A+C+G + +++ V+ D+ F+E
Sbjct: 449 ELP-QIELSQLRGFDGARTATIEVGGTIGTVKVAMCHGLRPTRDLCEAVRAGTADFDFIE 507
Query: 317 VMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLE 374
+MACP GC++GGG ++ K P L K E+++ + + NP V++LY ++LE
Sbjct: 508 IMACPGGCVDGGGNLRSKKAYLPYAL-KRRESLFAIDRSTAVRQSHNNPQVQALYRDFLE 566
Query: 375 QPGSEKAKKHVHTEY 389
+P SEKA +HT Y
Sbjct: 567 RPYSEKAHHLLHTYY 581
>gi|67526349|ref|XP_661236.1| hypothetical protein AN3632.2 [Aspergillus nidulans FGSC A4]
gi|40740650|gb|EAA59840.1| hypothetical protein AN3632.2 [Aspergillus nidulans FGSC A4]
Length = 636
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 179/380 (47%), Gaps = 80/380 (21%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTS 63
++G+ + S+SPQ RASLA +G+S + + FL G + DT+
Sbjct: 158 DEGRIFVASVSPQVRASLAATYGVSEKEANHIIHQFLSGPNGLRAGGKHGSGFSWVVDTN 217
Query: 64 CSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYIS 123
R+ L+ +E ES S P+LSSACPGWICYAEK +ILP++S
Sbjct: 218 SLREAVLVLTADEV-------SESLTGSSAPKRPILSSACPGWICYAEKT-HPFILPHLS 269
Query: 124 SVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFV----FQLDSQE 179
+KSPQ G +K I +KLG I+H+++MPC+DKKLEA+RE+ +L S E
Sbjct: 270 RLKSPQALTGTFLKTVISKKLGVPASRIWHLSIMPCFDKKLEASREELTDAAWNRLSSGE 329
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT--------NV---- 227
+ +VD V+T+ E+L L + ++ L L + L NV
Sbjct: 330 PN-----TPVRDVDCVITSRELLSLASSRGISLPNLPRKSLPQSLRLPFPDPALNVFLFS 384
Query: 228 -DDEGHLYGVAGSSGGYAETV-FRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGK 284
+G+SGGY V A+ +++ + RN+D + L EG+
Sbjct: 385 EKSFSRQTSASGTSGGYLHNVLLSFQARNPGSEIVT-----QRGRNADVVDYTLMSPEGE 439
Query: 285 TLLKFALCYGFQNLQNIVRKVKMRKC--------------------------------DY 312
+LK A YGF+N+QN+VRK+K + DY
Sbjct: 440 PILKAARYYGFRNIQNLVRKLKPARVSRLPGAKVATGQTAGGRRQPISRNGASAGSSMDY 499
Query: 313 QFVEVMACPSGCLNGGGQIK 332
+VEVMACP GC NGGGQI+
Sbjct: 500 AYVEVMACPGGCTNGGGQIR 519
>gi|114567439|ref|YP_754593.1| ferredoxin hydrogenase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114338374|gb|ABI69222.1| Ferredoxin hydrogenase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 387
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 108/320 (33%), Positives = 162/320 (50%), Gaps = 25/320 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ +P R +L E FG +P V K+ L+ LG ++DT + DLT++E E
Sbjct: 79 KFVVVQEAPAVRVALGEEFGQAPGTNVKNKMYAALRKLGFDKVYDTEFTADLTIMEEGTE 138
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
I R LP +S CP WI YAE +LP+ISS KSPQQ GA
Sbjct: 139 LIHRVYGFLGVPGFEEVGPLPQFTSCCPAWIKYAEDNY-PLVLPHISSAKSPQQMWGAVA 197
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K ++ +KL P ++ V+VMPC KK E R +F+ ++D VD V+
Sbjct: 198 KTYLAEKLNVDPANMFSVSVMPCTAKKYECERPEFI------ASGHQD-------VDLVI 244
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ ++F L + D+ + ++ G++GG E R A + L
Sbjct: 245 TTRELAQMIKDAGIDFMGLPDEEADRFVGLSTGAATIF---GATGGVMEAALRTAYEILS 301
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTL---LKFALCY--GFQNLQNIVRKVKMRKC 310
G+ + G +EF +R D RE +EV K L L ++C G +++ N++ V +
Sbjct: 302 GESL-GKVEFDAVRGLDPVREATVEVPVKALGTSLPVSVCVVTGTKHVANVIEDVLAGRS 360
Query: 311 DYQFVEVMACPSGCLNGGGQ 330
Y F+EVM CP GC+NGGGQ
Sbjct: 361 KYHFIEVMNCPGGCINGGGQ 380
>gi|325290294|ref|YP_004266475.1| hydrogenase, Fe-only [Syntrophobotulus glycolicus DSM 8271]
gi|324965695|gb|ADY56474.1| hydrogenase, Fe-only [Syntrophobotulus glycolicus DSM 8271]
Length = 521
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/390 (29%), Positives = 197/390 (50%), Gaps = 29/390 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K VI +P R ++ + +G P+ V K+ L+ +G + DT+ + DLT++E +
Sbjct: 148 KIVIAQTAPAIRVAIGDDYGF-PIGTNVEGKMVAALREIGFDYVADTNWAADLTIMEEAS 206
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
E + R K + M ++ CP W+ + E I P S+ KSPQ +GA
Sbjct: 207 EHVHRLKDP--------TAPYTMFTTCCPAWVKFMEYYYPEMI-PKYSTSKSPQAMMGAM 257
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
IK + +K G P +I V VMPC KK E RE +L+S + + G+ ++D V
Sbjct: 258 IKTYFAEKKGIDPSKIVSVAVMPCAAKKYECTRE----ELNSAAKYHNKPGMR--DIDVV 311
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
LTT E +++++K ++ L++S D ++ G+++ +SGG E R A
Sbjct: 312 LTTREFSEMLKMKKIDLAKLQDSDFDNLVGEASGAGYIFA---NSGGVIEAAVRTAYFLA 368
Query: 256 FGKVIEGH-LEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
G+ L+ + + +E LE+ G K A+ G N + I + + ++
Sbjct: 369 TGEQPPAVVLDLQPVHGLQGIKEATLEIPGIGEEKIAVAQGLNNARKICDMINAGQAPWR 428
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELI--KTLETIYL--ENVMLADPFKNPLVRSLY 369
VEVMACP GC++GGGQ P+ P++ + K +E +Y +++ + +NP ++ +Y
Sbjct: 429 LVEVMACPGGCISGGGQ--PRSSVPPQDRVREKRIEAVYKIDKSMRIRLSHENPEIKKIY 486
Query: 370 DEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 399
E+L QP SE+A+ +HT Y P +TA+
Sbjct: 487 TEFLGQPLSEEAELLLHTHYVPKDHLLTAK 516
>gi|355678906|ref|ZP_09061090.1| hypothetical protein HMPREF9469_04127 [Clostridium citroniae
WAL-17108]
gi|354812390|gb|EHE97008.1| hypothetical protein HMPREF9469_04127 [Clostridium citroniae
WAL-17108]
Length = 461
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 204/382 (53%), Gaps = 24/382 (6%)
Query: 14 INKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIE 72
++ K V++S SP RA+L E FG+ + K+ L++LGV + DT+ + DLT++E
Sbjct: 87 MDPDKIVVVSTSPSVRAALGEEFGMEEGSFVQGKMVALLRTLGVDYVLDTNFAADLTIVE 146
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+E I R + LP +S CP W+ +AE +LP+IS+ KSP
Sbjct: 147 EASELIDRITTGRRP--------LPQFTSCCPAWVKFAEIYYPD-MLPHISTAKSPIGMQ 197
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G TIK + +K+G P +I +V V PC KK E R+ ++ + EE ++ + ++
Sbjct: 198 GPTIKTYFARKMGIDPKKIVNVAVTPCTAKKYEIRRQ----EMKAAEEYLGEDDMR--DM 251
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D V+TT E+ ++K ++F +LE+S D+++ G ++G ++GG E R A
Sbjct: 252 DYVITTRELAQWARMKRIDFSSLEDSDYDRLMGQGSGAGVIFG---NTGGVMEAALRTAY 308
Query: 253 KTLFGKVIEGHL-EFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
+ + G+ G L E +R + RE +L++ T+ A+ YG +L+ + +++ +
Sbjct: 309 EYITGEQAPGVLYELTPVRGMEAVREASLQIADMTV-NVAVVYGTASLRRFLEEMRNGEK 367
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF--KNPLVRSL 368
Y FVEVM CP GC+ GGGQ K K + K ++++Y + + +N ++ L
Sbjct: 368 QYHFVEVMTCPGGCIGGGGQPKDKKFEGDALRQKRIDSLYKRDGAMTVRLSHENEEIKVL 427
Query: 369 YDEWLEQPGSEKAKKHVHTEYH 390
Y E+ ++P SE A+K +HT Y
Sbjct: 428 YQEFYKKPLSELAEKMLHTSYR 449
>gi|220929711|ref|YP_002506620.1| hydrogenase, Fe-only [Clostridium cellulolyticum H10]
gi|220000039|gb|ACL76640.1| hydrogenase, Fe-only [Clostridium cellulolyticum H10]
Length = 562
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/365 (30%), Positives = 182/365 (49%), Gaps = 39/365 (10%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K K VI ++P R ++ E FG+ P ++ K+ + L+ LG +FDT+ DLT+IE
Sbjct: 218 DKNKRVIAQIAPAVRVAIGEDFGLQPGEISMGKIVSALRKLGFDQVFDTAVGADLTVIEE 277
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
E + R ++ ++ LP+ SS CP W YAE Q ++ +SS SPQQ G
Sbjct: 278 AEELMDRIQRKEK---------LPLFSSCCPAWFKYAE-QKHPDLMENVSSCLSPQQMFG 327
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A IK ++ E + +MPC KK EAAR + + Q VD
Sbjct: 328 AVIKEQYKREKASDEKENVVIAIMPCTAKKYEAARPENTINGERQ-------------VD 374
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E+ +IQ + F LE+ +D G ++GV SGG +E V R+ K
Sbjct: 375 MVITTQELAIMIQENGIVFNELEDEAIDMPFGFTSGAGVIFGV---SGGVSEAVLRYYYK 431
Query: 254 TLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ G L + +R + +E + E++G+T+ + + +G +N + ++R++K + +
Sbjct: 432 ERNASTLRG-LSYCGVRGMEGVKEASAEIDGRTV-RIGIVHGLKNAEKLIRRIKSGEEKF 489
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK----NPLVRSL 368
F+EVMACP GC+ G GQ P+ E ++ L + V + P K NP + +L
Sbjct: 490 DFIEVMACPGGCIGGAGQPIPQ-----NENVRKLRAKGIYKVDKSLPIKRSDDNPTIDAL 544
Query: 369 YDEWL 373
Y+ L
Sbjct: 545 YNGIL 549
>gi|259511479|sp|Q5B748.2|NAR1_EMENI RecName: Full=Cytosolic Fe-S cluster assembly factor nar1; AltName:
Full=Nuclear architecture-related protein 1
gi|259481839|tpe|CBF75735.1| TPA: iron-sulfur cluster assembly associated protein Nar1, putative
(AFU_orthologue; AFUA_4G11960) [Aspergillus nidulans
FGSC A4]
Length = 590
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 123/380 (32%), Positives = 179/380 (47%), Gaps = 80/380 (21%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTS 63
++G+ + S+SPQ RASLA +G+S + + FL G + DT+
Sbjct: 112 DEGRIFVASVSPQVRASLAATYGVSEKEANHIIHQFLSGPNGLRAGGKHGSGFSWVVDTN 171
Query: 64 CSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYIS 123
R+ L+ +E ES S P+LSSACPGWICYAEK +ILP++S
Sbjct: 172 SLREAVLVLTADEV-------SESLTGSSAPKRPILSSACPGWICYAEKT-HPFILPHLS 223
Query: 124 SVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFV----FQLDSQE 179
+KSPQ G +K I +KLG I+H+++MPC+DKKLEA+RE+ +L S E
Sbjct: 224 RLKSPQALTGTFLKTVISKKLGVPASRIWHLSIMPCFDKKLEASREELTDAAWNRLSSGE 283
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT--------NV---- 227
+ +VD V+T+ E+L L + ++ L L + L NV
Sbjct: 284 PN-----TPVRDVDCVITSRELLSLASSRGISLPNLPRKSLPQSLRLPFPDPALNVFLFS 338
Query: 228 -DDEGHLYGVAGSSGGYAETV-FRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGK 284
+G+SGGY V A+ +++ + RN+D + L EG+
Sbjct: 339 EKSFSRQTSASGTSGGYLHNVLLSFQARNPGSEIVT-----QRGRNADVVDYTLMSPEGE 393
Query: 285 TLLKFALCYGFQNLQNIVRKVKMRKC--------------------------------DY 312
+LK A YGF+N+QN+VRK+K + DY
Sbjct: 394 PILKAARYYGFRNIQNLVRKLKPARVSRLPGAKVATGQTAGGRRQPISRNGASAGSSMDY 453
Query: 313 QFVEVMACPSGCLNGGGQIK 332
+VEVMACP GC NGGGQI+
Sbjct: 454 AYVEVMACPGGCTNGGGQIR 473
>gi|255728047|ref|XP_002548949.1| hypothetical protein CTRG_03246 [Candida tropicalis MYA-3404]
gi|240133265|gb|EER32821.1| hypothetical protein CTRG_03246 [Candida tropicalis MYA-3404]
Length = 537
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 183/388 (47%), Gaps = 79/388 (20%)
Query: 15 NKGKAVII-SLSPQSRASLAEHFGISPLQVFKKLTT-FLKSLGVKSIFDTSCSRDLTLIE 72
N+G V + S+S QSRASLA + +S + K L F+ +G + TS R L+LI
Sbjct: 104 NRGDRVFVASVSQQSRASLALAYNLSMDDIDKLLINLFIHQMGFTYVVGTSLGRKLSLIN 163
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
I + K+++E ++ P+LSS CPGW+ YAEK Y+LP IS+VKSPQQ
Sbjct: 164 EAQSLITK-KENKELNNG------PVLSSICPGWVLYAEKT-HPYVLPRISTVKSPQQIT 215
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G +K L ++YHV++MPC+DKKLE+AR + D+ EE+ +P+V
Sbjct: 216 GCLLKSLTASSLQIPKSKVYHVSIMPCFDKKLESARPEI---YDTSEES-------VPDV 265
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLY-----------------G 235
D VLT E++ LI+ ++ + L E + +L +Y
Sbjct: 266 DCVLTAKELVTLIEEQSPKYSLLPEDKISSILQINTPMSEIYQRCAPPNWPFIEYSWSND 325
Query: 236 VAGSSGGYAETVFRHAAKTLF--GKVIEGHLEFKTI--RNSDFREVALEVEGKTLLKFAL 291
+SGGYA + + L G +TI RN D E+ L G+ L A+
Sbjct: 326 PGSASGGYAYNYLKIFQENLLVKGGYDAEKFMLQTINGRNPDIYELRLMYNGEKLASSAV 385
Query: 292 CYGFQNLQNIVRKVK------------------------------------MRKCDYQFV 315
GF+N+QN+VRK+K K DY V
Sbjct: 386 VNGFRNIQNLVRKLKPTAGGKSTVKSNPLAARRRARISTRDKSDTSEETADASKVDY--V 443
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELI 343
E+MACP+GC+NGGGQI + KE I
Sbjct: 444 EIMACPNGCINGGGQISAPSTIAEKEWI 471
>gi|332981955|ref|YP_004463396.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Mahella
australiensis 50-1 BON]
gi|332699633|gb|AEE96574.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Mahella
australiensis 50-1 BON]
Length = 573
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 123/377 (32%), Positives = 201/377 (53%), Gaps = 37/377 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI+ +P R S+AE F + P V +L L+ LG +FDT + DLT++E +E
Sbjct: 224 KRVIVQTAPAIRVSIAEEFDMPPGTVALGQLAAALRRLGFDDVFDTDFAADLTIMEEGHE 283
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R + +LPM++S PGWI + E Q +L ++S+ KSPQQ GA
Sbjct: 284 LLERLQHG---------GTLPMITSCSPGWINFIE-QYYPDLLSHLSTCKSPQQMFGAVA 333
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + QK+G +P++I+ V++MPC KK E+ R + D G+ +VD L
Sbjct: 334 KTYYAQKIGLKPEDIFVVSIMPCTAKKYESGRPEM-----------SDSGVR--DVDVAL 380
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ ++F AL E P D+ L G ++ G++GG E R + +
Sbjct: 381 TTRELARMIRQAGIDFAALPEEPFDEPLGISTGAGAIF---GATGGVMEAALRTVYEVVT 437
Query: 257 GKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G + L+F R +E +++++G + A+ +G N + ++ ++ DYQF+
Sbjct: 438 GNALP-VLDFTDGRGLKGIKEASMDLDGAN-VNVAVAHGIANAKKLLELIRNGAADYQFI 495
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELI-KTLETIY-LENVM-LADPFKNPLVRSLYDEW 372
E+M CP GC+ GGGQ P ++ + + +E IY ++ M L +NP V++LY E+
Sbjct: 496 EIMCCPGGCIGGGGQ----PYRTTNAIRQQRIEAIYEVDKAMPLRKSHENPAVQALYKEF 551
Query: 373 LEQPGSEKAKKHVHTEY 389
LE+P SEK+ +HT Y
Sbjct: 552 LEKPLSEKSHHLLHTTY 568
>gi|237734758|ref|ZP_04565239.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|229382086|gb|EEO32177.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 577
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 121/399 (30%), Positives = 206/399 (51%), Gaps = 43/399 (10%)
Query: 3 EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSI 59
EK+ + ++ +N K V++ +P RASL E FG+ P+ +V K+ LK +G +
Sbjct: 203 EKEEVHNVIAALNDDSKHVVVQTAPAVRASLGEEFGM-PIGTRVTGKMVHALKLMGFDRV 261
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
+DT+ DLT++E EFI R ++ LPM++S PGW+ Y E + +L
Sbjct: 262 YDTNFGADLTIMEEGYEFIHRIS---------NDGVLPMITSCSPGWVNYIEHEY-PELL 311
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
++SS KSP +G+ IK + ++ P +IY V++MPC KK E RE+ +
Sbjct: 312 DHLSSCKSPHMMLGSMIKSYYAKENNLDPKDIYVVSIMPCVAKKGEKEREENL------- 364
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK-MLTNVDDEGHLYGVAG 238
+GL+ +VD+VLTT E+ LI++ +NF L++ D+ M G ++ G
Sbjct: 365 ----TDGLK--DVDAVLTTRELGKLIKMFGINFRDLKDEDFDQDMFGEYTGAGVIF---G 415
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
+SGG E R L + + +L++ +R + +E +L++ G + A+ +
Sbjct: 416 ASGGVMEAALRTVTDVLTKEDLT-NLDYHAVRGEEGVKEASLKI-GDMTVNVAVAHSMVL 473
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-----IKPKPGQSPKELIKTLETIYLE 352
+ ++ ++K Y F+E+M CP GC+NGGGQ + G K+ + +Y E
Sbjct: 474 AKPLLEEIKNGTSKYHFIEIMGCPGGCVNGGGQSYVNALTRNSGFDWKQ--ARAKALYDE 531
Query: 353 NVML--ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
++ L KN ++ LY ++L +P SEKA +HT Y
Sbjct: 532 DLALPVRKSHKNSQIQKLYADFLGEPNSEKAHHLLHTHY 570
>gi|414154762|ref|ZP_11411079.1| Hydrogenase, Fe-only [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
gi|411453593|emb|CCO08983.1| Hydrogenase, Fe-only [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
Length = 485
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 127/382 (33%), Positives = 190/382 (49%), Gaps = 40/382 (10%)
Query: 20 VIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
V++ SP SR SL E FG+ V + K T LK LG ++FDT + DLT++E E +
Sbjct: 127 VVVQTSPASRVSLGEEFGLKAGTVVEGKQVTALKQLGFAAVFDTGFAADLTVMEEATELV 186
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R + N LP +S PGW+ + E +LP++S+ KSPQQ +GA IK
Sbjct: 187 QRLTG-------KLNKPLPQFTSCSPGWVKFCE-HFYPDLLPHMSTCKSPQQMLGAVIKS 238
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGL-----EIPEVD 193
+ QK G P +I+ V+VMPC KK E R + D GL I ++D
Sbjct: 239 YYAQKKGIDPAKIFTVSVMPCTAKKFECQRPEM-----------NDAGLLAGKPGIKDMD 287
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+ LTT E+ +I+ K +NF L +S D + G ++ GSSGG E R A
Sbjct: 288 AALTTRELARMIKQKNINFTKLGDSLYDSIFGEKSGAGLIF---GSSGGVTEAAVRTAFY 344
Query: 254 TLFG-KVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
L + + L F +R + +E + + G LK A+C G N + ++ ++ +
Sbjct: 345 LLTNTRPPDQLLNFTEVRGLTGIKEAVVNIPGFGNLKVAVCQGLGNARKVLELIRSGQGS 404
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD----PFKNPLVRS 367
+ FVE MACP GC+ GGGQ PK + +T L N+ A ++N V+
Sbjct: 405 WHFVEFMACPGGCVGGGGQ--PKTTDNA----RTARATGLYNLDAASSKRLSYENQEVQK 458
Query: 368 LYDEWLEQPGSEKAKKHVHTEY 389
+Y E+ P S+KA + +HT+Y
Sbjct: 459 IYQEFFGFPMSDKAHQLLHTDY 480
>gi|110803368|ref|YP_699606.1| iron hydrogenase [Clostridium perfringens SM101]
gi|110683869|gb|ABG87239.1| iron hydrogenase [Clostridium perfringens SM101]
Length = 572
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 194/381 (50%), Gaps = 42/381 (11%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI++++P R S+ E F + Q V KL T L+ LG +FD + D+T++E E
Sbjct: 223 KHVIVAIAPAVRTSMGELFKMGYGQDVTGKLYTALRKLGFDKVFDINFGADMTIMEEATE 282
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY---ILPYISSVKSPQQTIG 133
I R K +N PML+S CP W+ +++ +Y ++ +S+ KSPQQ G
Sbjct: 283 LIERIK---------NNGPFPMLTSCCPSWV----REVENYFPELVENLSTAKSPQQIFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+ K + Q P +++ VTVMPC KK EA R + +EG I +D
Sbjct: 330 SASKTYYPQVADIDPKKVFTVTVMPCTSKKFEADRPEM-----------ENEG--IRNID 376
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+V+TT E+ +I+ ++F LE+S +D + G ++ G++GG E R A
Sbjct: 377 AVITTRELARMIKAAKIDFAKLEDSEVDPAMGEYTGAGVIF---GATGGVMEAALRTAKD 433
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ ++ +++++ +R + +E +E+ G K A+ G N+ +V+ K+ DY
Sbjct: 434 FMENDNLD-NVDYEAVRGLAGIKEAEVEIAGNE-YKLAVVNGAANVFELVKSGKIN--DY 489
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRSL 368
F+EVMACP GC+NGGGQ S K I+ + L +N+ +N + +
Sbjct: 490 HFIEVMACPGGCVNGGGQPHISAEDSDKIDIREVRASVLYNQDKNLEKRKSHQNSALLKM 549
Query: 369 YDEWLEQPGSEKAKKHVHTEY 389
Y+ ++ +PG +A + +H +Y
Sbjct: 550 YENYMGKPGHGRAHELLHMKY 570
>gi|374339987|ref|YP_005096723.1| hydrogenase, Fe-only [Marinitoga piezophila KA3]
gi|372101521|gb|AEX85425.1| hydrogenase, Fe-only [Marinitoga piezophila KA3]
Length = 569
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 127/376 (33%), Positives = 193/376 (51%), Gaps = 39/376 (10%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K I+ +P R ++ E FG+ P + KL L+ LG +FDT+ + DLT++E E
Sbjct: 225 KVTIVQTAPAVRVAIGEPFGMEPGTISTGKLVAALRLLGFDKVFDTNFTADLTIVEEGTE 284
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
FI R+K+ LP+ +S PGWI + E Y LP++SS KSPQQ GA
Sbjct: 285 FIHRFKEG---------GKLPLFTSCSPGWIKFIEHNYPEY-LPHLSSAKSPQQMFGAVA 334
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
KH+ +KLG +++ V++MPC KK E R + +VD VL
Sbjct: 335 KHYYAKKLGIPKEKLVVVSIMPCTAKKYEMNRPEHA-----------------GDVDFVL 377
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ ++F+ L E D G ++ G+SGG E R A + L
Sbjct: 378 TTRELAKMIKESGIDFKNLPEEEYDNPFGISTGAGAIF---GASGGVMEAALRTAYEILT 434
Query: 257 GKVIEGHLEFKTIRNSDF-REVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G+ +E L+F +R D +E +E+ GK ++K A+ + ++ ++K + +Y FV
Sbjct: 435 GRELE-KLDFTAVRGLDMVKEAEVEINGK-IIKVAVVNTLGAARKLLERMKNGEVEYHFV 492
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV--MLADPFKNPLVRSLYDEWL 373
E MACP GC+ GGGQ P + + L+K +E IY + L +NP V+ LY E+L
Sbjct: 493 EFMACPGGCIGGGGQPIP---TTEEILLKRMEAIYEIDYGSKLRKSHENPAVKELYKEFL 549
Query: 374 EQPGSEKAKKHVHTEY 389
+P SE A +HT Y
Sbjct: 550 GEPNSEIAHHLLHTHY 565
>gi|365831422|ref|ZP_09372974.1| hydrogenase, Fe-only [Coprobacillus sp. 3_3_56FAA]
gi|365261899|gb|EHM91800.1| hydrogenase, Fe-only [Coprobacillus sp. 3_3_56FAA]
Length = 582
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 121/399 (30%), Positives = 206/399 (51%), Gaps = 43/399 (10%)
Query: 3 EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSI 59
EK+ + ++ +N K V++ +P RASL E FG+ P+ +V K+ LK +G +
Sbjct: 208 EKEEVHNVIAALNDDSKHVVVQTAPAVRASLGEEFGM-PIGTRVTGKMVHALKLMGFDRV 266
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
+DT+ DLT++E EFI R ++ LPM++S PGW+ Y E + +L
Sbjct: 267 YDTNFGADLTIMEEGYEFIHRIS---------NDGVLPMITSCSPGWVNYIEHEY-PELL 316
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
++SS KSP +G+ IK + ++ P +IY V++MPC KK E RE+ +
Sbjct: 317 DHLSSCKSPHMMLGSMIKSYYAKENNLDPKDIYVVSIMPCVAKKGEKEREENL------- 369
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK-MLTNVDDEGHLYGVAG 238
+GL+ +VD+VLTT E+ LI++ +NF L++ D+ M G ++ G
Sbjct: 370 ----TDGLK--DVDAVLTTRELGKLIKMFGINFRDLKDEDFDQDMFGEYTGAGVIF---G 420
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
+SGG E R L + + +L++ +R + +E +L++ G + A+ +
Sbjct: 421 ASGGVMEAALRTVTDVLTKEDLT-NLDYHAVRGEEEVKEASLKI-GDMTVNVAVAHSMVL 478
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-----IKPKPGQSPKELIKTLETIYLE 352
+ ++ ++K Y F+E+M CP GC+NGGGQ + G K+ + +Y E
Sbjct: 479 AKPLLEEIKNGTSKYHFIEIMGCPGGCVNGGGQSYVNALTRNSGFDWKQ--ARAKALYDE 536
Query: 353 NVML--ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
++ L KN ++ LY ++L +P SEKA +HT Y
Sbjct: 537 DLALPVRKSHKNSQIQKLYADFLGEPNSEKAHHLLHTHY 575
>gi|374324426|ref|YP_005077555.1| Periplasmic [Fe] hydrogenase large subunit (Fe hydrogenlyase)
[Paenibacillus terrae HPL-003]
gi|357203435|gb|AET61332.1| Periplasmic [Fe] hydrogenase large subunit (Fe hydrogenlyase)
[Paenibacillus terrae HPL-003]
Length = 446
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 190/391 (48%), Gaps = 34/391 (8%)
Query: 6 SLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDT 62
SL++ + K G+ I+ +P R S+AE FG+ P K+ L+ LG ++DT
Sbjct: 60 SLNKVTDMMTKPGQFRIVQCAPAIRVSIAEEFGM-PFGTLTPGKMAAALRRLGFDRVYDT 118
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
+ D+T++E E I R + LPM +S CP W+ +AE + +L ++
Sbjct: 119 NFGADVTIMEEGTELIRRVTE---------GGPLPMFTSCCPAWVRFAEIEYPD-LLDHL 168
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
SS KSP Q +GA +K + Q P IY V +MPC K+ E R + + + Y
Sbjct: 169 SSCKSPMQMLGALVKTYGAQLDEVEPANIYSVAIMPCTCKQFECDRPEM------EADGY 222
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 242
RD VD VLTT E+ I+ ++F +L + D L G ++GV +GG
Sbjct: 223 RD-------VDEVLTTRELAYWIKESGIDFMSLPDEEFDSPLGRYSGAGSIFGV---TGG 272
Query: 243 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIV 302
E R + L + + L+ +R + VA G+ LK A+ G Q+ ++
Sbjct: 273 VMEAAIRTGYELLTNEKLP-KLQLDFVRGEEGIRVAEVQVGELQLKVAVVAGLQHAYGLL 331
Query: 303 RKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE-TIYLENVMLA--DP 359
+V+ +CDY F+EVM CP+GC++GGGQ K + E + + +IY + L
Sbjct: 332 DRVQAGECDYHFIEVMGCPAGCISGGGQPKLMLEKQKIEAYRARKSSIYGHDAGLQVRKS 391
Query: 360 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
+NP + LYDE+L +P + +HT +
Sbjct: 392 HENPHIIKLYDEFLGEPLGHVSHHLLHTTFQ 422
>gi|167755791|ref|ZP_02427918.1| hypothetical protein CLORAM_01306 [Clostridium ramosum DSM 1402]
gi|374625084|ref|ZP_09697501.1| hydrogenase, Fe-only [Coprobacillus sp. 8_2_54BFAA]
gi|167704730|gb|EDS19309.1| hydrogenase, Fe-only [Clostridium ramosum DSM 1402]
gi|373916367|gb|EHQ48115.1| hydrogenase, Fe-only [Coprobacillus sp. 8_2_54BFAA]
Length = 582
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 121/399 (30%), Positives = 206/399 (51%), Gaps = 43/399 (10%)
Query: 3 EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSI 59
EK+ + ++ +N K V++ +P RASL E FG+ P+ +V K+ LK +G +
Sbjct: 208 EKEEVHNVIAALNDDSKHVVVQTAPAVRASLGEEFGM-PIGTRVTGKMVHALKLMGFDRV 266
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
+DT+ DLT++E EFI R ++ LPM++S PGW+ Y E + +L
Sbjct: 267 YDTNFGADLTIMEEGYEFIHRIS---------NDGVLPMITSCSPGWVNYIEHEY-PELL 316
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
++SS KSP +G+ IK + ++ P +IY V++MPC KK E RE+ +
Sbjct: 317 DHLSSCKSPHMMLGSMIKSYYAKENNLDPKDIYVVSIMPCVAKKGEKEREENL------- 369
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK-MLTNVDDEGHLYGVAG 238
+GL+ +VD+VLTT E+ LI++ +NF L++ D+ M G ++ G
Sbjct: 370 ----TDGLK--DVDAVLTTRELGKLIKMFGINFRDLKDEDFDQDMFGEYTGAGVIF---G 420
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
+SGG E R L + + +L++ +R + +E +L++ G + A+ +
Sbjct: 421 ASGGVMEAALRTVTDVLTKEDLT-NLDYHAVRGEEGVKEASLKI-GDMTVNVAVAHSMVL 478
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQ-----IKPKPGQSPKELIKTLETIYLE 352
+ ++ ++K Y F+E+M CP GC+NGGGQ + G K+ + +Y E
Sbjct: 479 AKPLLEEIKNGTSKYHFIEIMGCPGGCVNGGGQSYVNALTRNSGFDWKQ--ARAKALYDE 536
Query: 353 NVML--ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
++ L KN ++ LY ++L +P SEKA +HT Y
Sbjct: 537 DLALPVRKSHKNSQIQKLYADFLGEPNSEKAHHLLHTHY 575
>gi|410466768|ref|ZP_11319352.1| iron only hydrogenase large subunit [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409980732|gb|EKO37419.1| iron only hydrogenase large subunit [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 475
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/389 (29%), Positives = 176/389 (45%), Gaps = 34/389 (8%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+ + ++ +P R +LAE FG++P + KL L+ LG ++DT+ + D+T++E
Sbjct: 110 DPSRVAMVQCAPAVRVTLAEEFGLAPGSLTPGKLAAGLRRLGFAVVYDTTFAADVTVMEE 169
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
E +AR + LP+ +S CP W+ + E ++P++SS KSPQQ G
Sbjct: 170 SAELLARIAE---------GGRLPLFTSCCPAWVRHVETAW-PELIPHLSSCKSPQQMAG 219
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + GF P + V+VMPC KK EAAR + R ++P+VD
Sbjct: 220 ALFKSYAASLDGFDPAAVASVSVMPCTAKKHEAARPEL-----------RSGPADLPDVD 268
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+V+T E+ ++ V+F AL + P D L G ++G A GG E R A
Sbjct: 269 AVVTVAELAAWLKEAGVDFAALPDEPFDAPLGRYSGAGVIFGAA---GGVMEAALRTAV- 324
Query: 254 TLFGKVIEGHLEFKTI----RNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK 309
L G+ E I E+ G+ L + G N+ ++ V
Sbjct: 325 ALCGEGRESANPQSGIVFSPAGPGVARAEFELAGRKLAAVTV-SGLANVGPLLEAVAAGT 383
Query: 310 CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN---VMLADPFKNPLVR 366
D+QF+EVM CP GC+ GGG K PG I + + + NP V
Sbjct: 384 ADFQFMEVMCCPGGCVAGGGTPKLLPGVDVAAAIGARRQALCAHDRALPVRAAHANPAVT 443
Query: 367 SLYDEWLEQPGSEKAKKHVHTEYHPVVKS 395
LY +LE+P S + + +HT Y K
Sbjct: 444 ELYAAFLERPLSHLSHELLHTVYGGAAKG 472
>gi|383791573|ref|YP_005476147.1| hydrogenase, Fe-only [Spirochaeta africana DSM 8902]
gi|383108107|gb|AFG38440.1| hydrogenase, Fe-only [Spirochaeta africana DSM 8902]
Length = 582
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/379 (29%), Positives = 187/379 (49%), Gaps = 39/379 (10%)
Query: 20 VIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
V + ++P R +L E FG+ P ++ K+ L+ LGV ++FDT+ + DLT++E EF+
Sbjct: 226 VAVQIAPAVRVALGEAFGLEPGEITTGKIYAALRRLGVDAVFDTNFAADLTIMEEGTEFV 285
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R E LP+++S CP W+ Y EK I P S+ KSP G K
Sbjct: 286 ERLTTGGE---------LPLITSCCPSWVDYMEKYYDDMI-PNFSTAKSPMMMQGVLTKT 335
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ + + I+ +MPC KK E R+ +F SQ +VD VLTT
Sbjct: 336 YYADQKKLGRERIFSAAIMPCTSKKYEITRDVNMFASGSQ------------DVDCVLTT 383
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ L++ ++F +L + D + G ++ G++GG E R A + G+
Sbjct: 384 RELARLLKQSGIDFLSLPDEEADSPIGAYTGAGTIF---GATGGVMEAALRTAYNLVTGE 440
Query: 259 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD-----Y 312
+G + F+ +R D R + + GK+ ++ A+ +G N+++++ ++K K + Y
Sbjct: 441 EHKG-ITFEAVRGMDGIRSAEIAINGKS-IRVAIAHGIANVRDLLEEIKQAKAEGKEPPY 498
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYD 370
F+EVMAC GC+ GGGQ G K + IY E + +NP ++ +Y
Sbjct: 499 HFIEVMACRGGCIAGGGQPY---GTQDDVREKRIAGIYQDDEKQTMRCSHQNPFIQEVYK 555
Query: 371 EWLEQPGSEKAKKHVHTEY 389
+LE+P S+K+ +HT Y
Sbjct: 556 NFLEKPCSKKSHDLLHTHY 574
>gi|188588322|ref|YP_001919488.1| hydrogenase-1 [Clostridium botulinum E3 str. Alaska E43]
gi|188498603|gb|ACD51739.1| hydrogenase-1 [Clostridium botulinum E3 str. Alaska E43]
Length = 576
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 182/377 (48%), Gaps = 32/377 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI++++P RA++ E F + + V K+ T L+ LG IFD + D+T++E E
Sbjct: 224 KHVIVAMAPSVRAAMGEAFKMGYGVDVTGKIYTALRMLGFNKIFDINFGADMTIMEEATE 283
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
I+R + PM +S CP W+ E +I +SS KSPQQ GA
Sbjct: 284 LISRVNEG---------GPFPMFTSCCPSWVREVENYFPEFI-DNLSSAKSPQQIFGAAS 333
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + + G +++ VT+MPC KK EA RE+ + GL +D+V+
Sbjct: 334 KTYYPEIEGLDAKDVFTVTIMPCTSKKFEADREEM-----------ENNGLR--NIDAVI 380
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ +NF LE+S D + G ++G ++GG E R A +
Sbjct: 381 TTRELAKMIKTAKINFSTLEDSEADPSMGEYTGAGAIFG---ATGGVMEAALRSAKDFIE 437
Query: 257 GKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVE 316
K +E +E++ +R + + A G A+ G N+ + V+ +M + Y F+E
Sbjct: 438 NKSLE-EIEYEQVRGLEGIKEATVTLGGQEYNIAVINGAANVFDFVKSGRMEEKQYHFIE 496
Query: 317 VMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN----VMLADPFKNPLVRSLYDEW 372
VM+CP GC+NGGGQ K I+T+ L N + +N + +Y+ +
Sbjct: 497 VMSCPGGCVNGGGQPHVNSKDRSKIDIRTVRASVLYNQDKGLSKRKSHENASLLKMYETY 556
Query: 373 LEQPGSEKAKKHVHTEY 389
+ +PG A + +H +Y
Sbjct: 557 MGKPGKGLAHELLHIKY 573
>gi|346315724|ref|ZP_08857236.1| hypothetical protein HMPREF9022_02893 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345904086|gb|EGX73835.1| hypothetical protein HMPREF9022_02893 [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 577
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 121/377 (32%), Positives = 196/377 (51%), Gaps = 35/377 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K I+ ++P RA+ E G+ + +KL + +G +FDT + DLT++E +E
Sbjct: 221 KITIVQIAPAVRAAWGESLGLRREEATIEKLGDAFRRMGADYVFDTDFAADLTIMEEASE 280
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ R ++E + +PM +S CPGW+ + + Q ++ ++S+ KSP Q GA
Sbjct: 281 FLERLHHNKEQE-------MPMFTSCCPGWVRFLKSQYPD-MVSHLSTSKSPHQMFGAVT 332
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K +KLG P IY+++VMPC KK E D DS YRD VD VL
Sbjct: 333 KTWFAEKLGVDPSSIYNISVMPCVAKKHEI---DIPVMNDS---GYRD-------VDVVL 379
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
T EV+ +I + ++ L++ PLD L G ++ G++GG E R A +
Sbjct: 380 TIREVVRMIHAEHIDVGYLQDHPLDDPLGTASGAGVIF---GATGGVMEAALRSAYYFVT 436
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G+ + F +R D ++E E++G ++ A+ G N + ++ ++ ++ Y F+
Sbjct: 437 GENADAD-AFANVRGMDGWKESTFEIQG-IPVRCAIVSGLGNTRRLIEAMRRKEVAYDFI 494
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYL--ENVMLADPFKNPLVRSLYDEW 372
EVMACP GC GGGQ P +EL + +T+Y N L +NP + +LYDE+
Sbjct: 495 EVMACPGGCSGGGGQ----PIHDGEELAAERADTLYHLDRNAKLRYSHENPSIHALYDEY 550
Query: 373 LEQPGSEKAKKHVHTEY 389
L +P SE A+K +HT++
Sbjct: 551 LGKPLSELAEKLLHTDH 567
>gi|367052883|ref|XP_003656820.1| hypothetical protein THITE_2121990 [Thielavia terrestris NRRL 8126]
gi|347004085|gb|AEO70484.1| hypothetical protein THITE_2121990 [Thielavia terrestris NRRL 8126]
Length = 587
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 47/311 (15%)
Query: 55 GVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQL 114
G + DT+ +R+ L+ +E + E + P+L+S+CPGW+CYAEK
Sbjct: 174 GFTWVVDTNAAREACLVLGSDEVLG------EDGAGGDRPTAPVLTSSCPGWVCYAEKTH 227
Query: 115 GSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQ 174
Y+LP++S VKSPQ +G +K + + LG PD I+H+ VMPC+DKKLEA+RE+
Sbjct: 228 -PYVLPHLSRVKSPQALMGTLLKTTLSRVLGIAPDRIWHLAVMPCFDKKLEASREELTDA 286
Query: 175 LDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLY 234
+ E + G + +VD V+TT E+L L + + ++F L +S + D H +
Sbjct: 287 VWGGEGKH---GKGVRDVDCVITTKEILMLAESRGIDFFGLSKSASKQQPAFPDPVIHKF 343
Query: 235 GV----------AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-LEVEG 283
AG+SGG + G +E RN+D + A + G
Sbjct: 344 LFPPQPRTQRRDAGTSGGNLHFILHDVQSRHPGS----RIEMTRGRNADVVDYAVVNPSG 399
Query: 284 KTLLKFALCYGFQNLQNIVRKVKMRK----------------------CDYQFVEVMACP 321
+T+ K A YGF+N+QN+VRK+K + +Y +VEVMACP
Sbjct: 400 ETVFKAARYYGFRNIQNLVRKLKPARPSRMPGGRPVGGARRPGGKSAGLEYAYVEVMACP 459
Query: 322 SGCLNGGGQIK 332
GC NGGGQIK
Sbjct: 460 GGCTNGGGQIK 470
>gi|310826467|ref|YP_003958824.1| hydrogenase [Eubacterium limosum KIST612]
gi|308738201|gb|ADO35861.1| hydrogenase [Eubacterium limosum KIST612]
Length = 583
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 189/383 (49%), Gaps = 42/383 (10%)
Query: 18 KAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K V++ +P RA+L E F + P+ V KL L+ L +FDT D+T++E
Sbjct: 226 KTVVVQSAPAVRAALGEEFNL-PMGTNVTGKLAAALRRLNFDGVFDTDFGADVTIMEEGT 284
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY---ILPYISSVKSPQQTI 132
E I R K + LPM++S PGWI K + +Y ++P++SS KSPQ
Sbjct: 285 ELINRVK---------NGGVLPMITSCSPGWI----KMIETYYPEMIPHLSSCKSPQNMT 331
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
GA +K H + G P ++ V+VMPC KK E R++ +D + +V
Sbjct: 332 GALLKSHYAEMNGIDPKDLVVVSVMPCTAKKYEVQRDE--LSVDGNQ-----------DV 378
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D +TT E+ +I+ ++F AL + D + ++ G++GG E R A
Sbjct: 379 DISITTRELARMIKEARLDFPALPDEEFDPYYGDYSGAAVIF---GATGGVMEAAVRTVA 435
Query: 253 KTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC- 310
L K I+ ++++ +R D + +EV +K A+ G N++ ++ +K +
Sbjct: 436 DVLNDKDIQ-KIDYEAVRGVDGLKTAEVEVTPDLTVKVAVASGGSNIRKVMEGIKNGEYK 494
Query: 311 DYQFVEVMACPSGCLNGGGQ--IKPKPGQSPKELIKTLETIYLENV--MLADPFKNPLVR 366
DY F+E+MACP GC+NGGGQ I K + + +Y E+ +NP V
Sbjct: 495 DYHFIELMACPGGCVNGGGQPIISAKRKMEVDIRAERAKALYSEDASKKYRKSHQNPSVI 554
Query: 367 SLYDEWLEQPGSEKAKKHVHTEY 389
+Y+E+L +PG KA + +HT Y
Sbjct: 555 RIYEEFLGEPGGHKAHELLHTTY 577
>gi|300854909|ref|YP_003779893.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528]
gi|300435024|gb|ADK14791.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528]
Length = 457
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 121/385 (31%), Positives = 190/385 (49%), Gaps = 54/385 (14%)
Query: 21 IISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
++ +P R ++AE FG+ PL K+ L+ LG I+DT+ + DLT++E +E I
Sbjct: 111 MVQCAPAVRVAIAEEFGM-PLGSLTPGKMAAALRELGFDRIYDTNFAADLTIMEEVSELI 169
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R + LPM +S CP W+ + E+ ++P++SS KSPQQ GA +K
Sbjct: 170 KRVTE---------GGVLPMFTSCCPAWVKFIEQDYPE-LIPHLSSCKSPQQMEGALLKT 219
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ Q G +IY V+VMPC KK E R + +D G + +VD+V+TT
Sbjct: 220 YGAQVDGVDAGKIYSVSVMPCICKKFECERPEM-----------KDSGYQ--DVDAVITT 266
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ LI+ ++F L E DK L G ++ ++GG E R A K + +
Sbjct: 267 RELAQLIKDAGIDFNGLPEKEFDKPLGTYSGAGTIFC---ATGGVMEAALRTAYKLITKE 323
Query: 259 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
I ++ K IR + R ++V G LK A+ G +N+ ++ +K K D+ F+EV
Sbjct: 324 EIP-DVDLKFIRGGEGVRSSEIKV-GDLTLKVAVVAGLKNVVPVLEAIKTGKADFHFIEV 381
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELI----------KTLET-IYLENVMLADPFKNPLVR 366
M CP GC++GGGQ PK LI +T T ++ EN+ NP ++
Sbjct: 382 MTCPVGCVSGGGQ--------PKVLIPDEKADAYTNRTCSTYVHDENMEYRKSHDNPEIQ 433
Query: 367 SLYDEWLEQPGSEKAKKHVHTEYHP 391
+Y E+L + + +HT Y P
Sbjct: 434 KIYKEFLVE---DNIHHLLHTTYTP 455
>gi|242277840|ref|YP_002989969.1| hydrogenase, Fe-only [Desulfovibrio salexigens DSM 2638]
gi|242120734|gb|ACS78430.1| hydrogenase, Fe-only [Desulfovibrio salexigens DSM 2638]
Length = 461
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 184/374 (49%), Gaps = 33/374 (8%)
Query: 21 IISLSPQSRASLAEHFGISPLQVF-KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
++ +P R S+AE +G++P + +L L+ LG +++DT + D+T++E +E +
Sbjct: 109 MVQCAPAVRTSIAEEYGLAPGTLTPGQLAASLRRLGFDAVYDTIFAADVTIMEESSELLD 168
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
R K S ++PM +S CPGW+ Y E + ++SS KSPQQ GA K +
Sbjct: 169 RIK---------SGGTMPMFTSCCPGWVRYMETAW-PDLTDHLSSCKSPQQMAGALFKTY 218
Query: 140 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
+ G + I V VMPC KK EAAR + Q Q++ VD+VLT
Sbjct: 219 GAEIAGVGAESIASVAVMPCTAKKHEAARPEM--QSSGQQD-----------VDAVLTVT 265
Query: 200 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK- 258
E+ +++ K +N + E D + G ++G ++GG E R A GK
Sbjct: 266 ELAAMLKAKGINLAEMPEEDFDVPMGLYSGAGVIFG---ATGGVMEAALRTAIAVTSGKD 322
Query: 259 VIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVM 318
V E + F R A++V GKT+ + + G N ++ ++ K D+ F+EVM
Sbjct: 323 VCESGVVFSPA-GEGIRRAAIDVAGKTV-RAVIVSGLANAAPLLEDIRAGKADFDFMEVM 380
Query: 319 ACPSGCLNGGGQIKPKPGQSPKELI-KTLETIYLENVMLA--DPFKNPLVRSLYDEWLEQ 375
C GC+ GGGQ K PG E+I K ++ + L KN V +LYD++L +
Sbjct: 381 CCHGGCVAGGGQPKLLPGIDRDEVIAKRRGGLHRHDKELPVRASHKNEAVTALYDKYLGE 440
Query: 376 PGSEKAKKHVHTEY 389
P ++ + +HT Y
Sbjct: 441 PLGHRSHELLHTHY 454
>gi|326201303|ref|ZP_08191175.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
gi|325988871|gb|EGD49695.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
Length = 562
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/365 (30%), Positives = 180/365 (49%), Gaps = 39/365 (10%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
NK K VI ++P R ++ E FG+ P Q+ K+ L+ LG +FDT+ DLT+IE
Sbjct: 218 NKNKRVIAQIAPAVRVAIGEDFGLQPGQISMGKIVAALRKLGFDQVFDTAVGADLTVIEE 277
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
E + R ++ ++ LP+ SS CP W YAE Q ++ +SS SP Q G
Sbjct: 278 AEELMDRIQRKEK---------LPLFSSCCPSWFKYAE-QKHPELMENVSSCLSPMQMFG 327
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A IK ++ E + +MPC KK EAAR + + Q VD
Sbjct: 328 AVIKEQFKKEKFSEEKENIVIAIMPCTAKKYEAARPENAINGERQ-------------VD 374
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E+ +IQ + F LE+ +D G ++GV SGG +E V R+ K
Sbjct: 375 MVITTQELAIMIQENGIVFNELEDEAIDMPFGFTSGAGVIFGV---SGGVSEAVLRYYYK 431
Query: 254 TLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
++G + + +R + +E E++G+T+ + + +G +N + ++RK+K + +
Sbjct: 432 ERNASALKG-ISYSGVRGMEGVKEATAEIDGRTV-RIGVVHGLKNAEKLIRKIKRGEEKF 489
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK----NPLVRSL 368
F+EVMACP GC+ G GQ P+ E ++ L + V + P K NP + +L
Sbjct: 490 DFIEVMACPGGCIGGAGQPIPQ-----NENVRKLRAKGIYKVDKSLPIKRSDDNPTIDAL 544
Query: 369 YDEWL 373
Y+ L
Sbjct: 545 YNGVL 549
>gi|325278931|ref|YP_004251473.1| hydrogenase, Fe-only [Odoribacter splanchnicus DSM 20712]
gi|324310740|gb|ADY31293.1| hydrogenase, Fe-only [Odoribacter splanchnicus DSM 20712]
Length = 587
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 198/379 (52%), Gaps = 28/379 (7%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N K VI+ +P RA+L E FG++P V K+ L+ LG +FDT + DLT++E
Sbjct: 226 NPKKTVIVQTAPAVRAALGEEFGLTPGTSVTGKMVAALRQLGFDKVFDTDFAADLTIMEE 285
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+E + R + + D + LP+L+S CP W+ + E Q +L S+ +SPQQ G
Sbjct: 286 GSELLDRLTRYLKGD---KDVCLPILTSCCPAWVNFFEHQFPD-MLDIPSTARSPQQMFG 341
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K++ +K+ +++ V++MPC KK E ARE+F Q D P+V+
Sbjct: 342 AIAKNYWAEKMNIPREDLIVVSIMPCLAKKYECAREEFATQGD-------------PDVN 388
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
L+T E+ LI+ ++F +L + D L G ++ G+SGG E R A +
Sbjct: 389 YSLSTRELASLIKRANIDFNSLADEDFDHPLGESTGAGVIF---GASGGVMEAALRTAYE 445
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
GK ++ ++FK +R + ++ +++ G L + +G N + ++ +++ K ++
Sbjct: 446 LYTGKTLD-KVDFKEVRGLENIKKATIKLNG-VELHVGIAHGLGNARKLLNEIREGKSEF 503
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYD 370
+E+MACP GC+ GGGQ P + L + IY E+ L +NP + LY+
Sbjct: 504 HAIEIMACPGGCIGGGGQ--PLHHGNSALLKARSQAIYQEDEHKPLRKSHENPDIIKLYE 561
Query: 371 EWLEQPGSEKAKKHVHTEY 389
E+L +P SEKA +HT Y
Sbjct: 562 EYLGKPLSEKAHHLLHTHY 580
>gi|417967479|ref|ZP_12608607.1| Hydrogenase-1, partial [Candidatus Arthromitus sp. SFB-5]
gi|380336209|gb|EIA26251.1| Hydrogenase-1, partial [Candidatus Arthromitus sp. SFB-5]
Length = 379
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 184/376 (48%), Gaps = 33/376 (8%)
Query: 20 VIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
VI++++P R +L E F + + V K+ T L+ +G IFD + DLT++E E +
Sbjct: 25 VIVAMAPSVRTALGELFKMDYGVDVTNKIYTALRKIGFDKIFDLNFGADLTIMEEATELV 84
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
+ K + +++ PM +S CPGW+ AE +L S+ KSPQQ GA K
Sbjct: 85 NKIKNN--------DTNFPMFTSCCPGWVRLAENYFPE-LLDNFSTAKSPQQIFGAASKS 135
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ P +++ VT+MPC KK EA R + V + G I +D+V+TT
Sbjct: 136 YYPAIENLDPKKVFTVTIMPCTAKKFEADRPEMV-----------NNG--IRNIDAVITT 182
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E +++ ++F +LE+ LD+ + G ++GV +GG E R A L K
Sbjct: 183 REFGRMLKELKIDFSSLEDGELDEAMGLYTGAGAIFGV---TGGVMEAALRSAKDMLENK 239
Query: 259 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
++ +E+K +R + +E +E+ K A+ G N +++ + K Y F+EV
Sbjct: 240 DLD-KIEYKDVRGFEGIKEATVEINNKEYT-VAVVNGASNFFKMMKDNLLEKKQYHFIEV 297
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWL 373
MAC GC+NGGGQ P K K L L +N+ NP + +YD ++
Sbjct: 298 MACYGGCINGGGQPYVTPEMRSKIDYKKLRGNVLYNQDKNLKYRKSHHNPALLKMYDTYM 357
Query: 374 EQPGSEKAKKHVHTEY 389
+PG A + +H +Y
Sbjct: 358 GKPGKGLAHEILHQKY 373
>gi|346307786|ref|ZP_08849916.1| hypothetical protein HMPREF9457_01625 [Dorea formicigenerans
4_6_53AFAA]
gi|345904744|gb|EGX74488.1| hypothetical protein HMPREF9457_01625 [Dorea formicigenerans
4_6_53AFAA]
Length = 577
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 202/398 (50%), Gaps = 36/398 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKS 58
+ E+ +E I + K V+ ++P RA+ E G++P K+ LK +G+
Sbjct: 203 LRERSDTNEVWKAIEDPDKIVVAQVAPAVRAAWGEELGLAPEDATVGKIIDALKRMGINY 262
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT++E NEF+ R+ + D PM +S CPGW+ + + Q ++
Sbjct: 263 VFDTTFSADLTIMEEGNEFVKRFTSGELKDR-------PMFTSCCPGWVRFIKSQF-PHL 314
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+ Y+SS KSPQQ GA +K + +KLG P++IY V+VMPC KK E ++D
Sbjct: 315 VKYLSSAKSPQQMFGAVMKTYFAEKLGVSPEKIYTVSVMPCVAKKAER-------EMDLY 367
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
E Y ++D+V+TT E++ +I+ ++ + L + D+ + G ++ G
Sbjct: 368 YEEYAGH-----DIDAVITTRELIRMIRSAHISPQTLVDVESDRPMHEGTGAGVIF---G 419
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDF------REVALEVEGKTLLKFALC 292
++GG E R A + G+ F +R+ F +E ++ T ++ A+
Sbjct: 420 ATGGVMEAALRSAYYIIKGENPPAE-AFTAVRSQGFNENDGVQEANFQINDIT-VRTAVV 477
Query: 293 YGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE 352
G N + ++RK++ + Y FVEVMACP GC+ GGGQ P + + YL+
Sbjct: 478 SGLGNTRELIRKIESGEVHYDFVEVMACPGGCVGGGGQ--PIHDGEERAFERGKNLYYLD 535
Query: 353 -NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
N L +NP V +Y E+ E P S KA +HTE+
Sbjct: 536 RNANLRFSHENPDVIQMYKEYFEAPMSHKAHMLLHTEH 573
>gi|310778437|ref|YP_003966770.1| hydrogenase, Fe-only [Ilyobacter polytropus DSM 2926]
gi|309747760|gb|ADO82422.1| hydrogenase, Fe-only [Ilyobacter polytropus DSM 2926]
Length = 572
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 118/393 (30%), Positives = 192/393 (48%), Gaps = 31/393 (7%)
Query: 1 MLEKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKS 58
++E ++ E + K K I+ ++P + ++ E F I+P Q V + LK LG
Sbjct: 203 LVENNTVSELSRELKKREKHFIVQMAPAIKHTIGEEFFIAPGQDVTSMMVGALKKLGFSK 262
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+F T S D+T++E E I R + + PM +S CPGW+ Y EK +
Sbjct: 263 VFSTDYSADVTIMEEGTELIQRLTKGK--------GKTPMFTSCCPGWVNYVEKNHPEF- 313
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L +SS KSPQQ GA K + ++ ++I V++MPC KK EA R +++
Sbjct: 314 LGNLSSCKSPQQIFGALAKSYYAEESKVPKEDIVVVSIMPCTAKKGEAQR----IEMEDH 369
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES-PLDKMLTNVDDEGHLYGVA 237
+ + +VD V+TT E L+++ +NF AL D + G L+G
Sbjct: 370 DR--------VRDVDVVITTREFAKLVKMNNINFAALPNGQEYDSFMGKGSSAGRLFG-- 419
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQ 296
+SGG E R A T+ + G LEF+ IR + +E +E+ G+ LK A+ G
Sbjct: 420 -TSGGVMEAALRTVA-TILSEEKVGVLEFEEIRGFKNVKETTVEI-GENKLKLAVVNGIG 476
Query: 297 NLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVML 356
+ +++ +K + Y FVEVMAC GC++GGG P ++ ++ + + + L
Sbjct: 477 SAHSVMEGIKSGRLYYDFVEVMACHGGCISGGGAPIPDNLDVRRQRMEGMHG-FDKTSTL 535
Query: 357 ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
NP ++ LY+ +LE P K+ +HT Y
Sbjct: 536 RRSHDNPEIKRLYENYLEDPCGHKSHHLLHTTY 568
>gi|417962959|ref|ZP_12605049.1| Hydrogenase-1, partial [Candidatus Arthromitus sp. SFB-3]
gi|380335075|gb|EIA25356.1| Hydrogenase-1, partial [Candidatus Arthromitus sp. SFB-3]
Length = 359
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 184/376 (48%), Gaps = 33/376 (8%)
Query: 20 VIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
VI++++P R +L E F + + V K+ T L+ +G IFD + DLT++E E +
Sbjct: 5 VIVAMAPSVRTALGELFKMDYGVDVTNKIYTALRKIGFDKIFDLNFGADLTIMEEATELV 64
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
+ K + +++ PM +S CPGW+ AE +L S+ KSPQQ GA K
Sbjct: 65 NKIKNN--------DTNFPMFTSCCPGWVRLAENYFPE-LLDNFSTAKSPQQIFGAASKS 115
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ P +++ VT+MPC KK EA R + V + G I +D+V+TT
Sbjct: 116 YYPAIENLDPKKVFTVTIMPCTAKKFEADRPEMV-----------NNG--IRNIDAVITT 162
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E +++ ++F +LE+ LD+ + G ++GV +GG E R A L K
Sbjct: 163 REFGRMLKELKIDFSSLEDGELDEAMGLYTGAGAIFGV---TGGVMEAALRSAKDMLENK 219
Query: 259 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
++ +E+K +R + +E +E+ K A+ G N +++ + K Y F+EV
Sbjct: 220 DLD-KIEYKDVRGFEGIKEATVEINNKEYT-VAVVNGASNFFKMMKDNLLEKKQYHFIEV 277
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWL 373
MAC GC+NGGGQ P K K L L +N+ NP + +YD ++
Sbjct: 278 MACYGGCINGGGQPYVTPEMRSKIDYKKLRGNVLYNQDKNLKYRKSHHNPALLKMYDTYM 337
Query: 374 EQPGSEKAKKHVHTEY 389
+PG A + +H +Y
Sbjct: 338 GKPGKGLAHEILHQKY 353
>gi|240276342|gb|EER39854.1| nuclear prelamin [Ajellomyces capsulatus H143]
Length = 604
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 119/377 (31%), Positives = 176/377 (46%), Gaps = 66/377 (17%)
Query: 17 GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-----------GVKSIFDTSCS 65
GK + S+SPQ+RASLA +GIS + + FL G + DT+
Sbjct: 101 GKIFVASVSPQARASLAATYGISEREAGYLIEQFLSGPEGLRAGGAYGNGFTWVVDTNVM 160
Query: 66 RDLTLIEACNEFIARYKQSQESDDER-SNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
R + L + +E S+++ E P+LSSACPGWICYAEK ++LP+IS
Sbjct: 161 RQVCLELSVSEVTESLNSSKDTLIETFPAPKRPVLSSACPGWICYAEKT-HPHVLPHISR 219
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
+KSPQ G +K + + L +I+H+++MPC+DKKLEA+R++ +
Sbjct: 220 LKSPQAITGTLLKTVLSKALNISSSQIWHLSIMPCFDKKLEASRQELTDASWQDASSMTQ 279
Query: 185 EGLEIPE-------VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLY--- 234
+G E VD V+T+ E+L L + ++ L PL + + +
Sbjct: 280 KGHSTTESYSPVRDVDCVITSRELLMLATSRNISLRNLPLQPLPSPSVPLFPDPYFAPFL 339
Query: 235 ----------GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEG 283
AG+SGGY H T + ++ + RNSD E AL G
Sbjct: 340 FPKSSQFVQPSAAGTSGGY----LYHILTTYQHRNPGSQIQTQRGRNSDVIEYALISPSG 395
Query: 284 KTLLKFALCYGFQNLQNIVRKVKMRKC----------------------------DYQFV 315
T++K A YGF+N+QN+VRK+K + DY ++
Sbjct: 396 ATIIKAARYYGFRNIQNLVRKLKPPRASRLPGANPMIGRRAGGGCAATVSSTSATDYAYI 455
Query: 316 EVMACPSGCLNGGGQIK 332
EVMACP GC NGGGQI+
Sbjct: 456 EVMACPGGCTNGGGQIR 472
>gi|389633019|ref|XP_003714162.1| cytosolic Fe-S cluster assembly factor nar-1 [Magnaporthe oryzae
70-15]
gi|351646495|gb|EHA54355.1| cytosolic Fe-S cluster assembly factor nar-1 [Magnaporthe oryzae
70-15]
gi|440473671|gb|ELQ42453.1| hypothetical protein OOU_Y34scaffold00207g18 [Magnaporthe oryzae
Y34]
gi|440486283|gb|ELQ66164.1| hypothetical protein OOW_P131scaffold00420g3 [Magnaporthe oryzae
P131]
Length = 598
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 128/403 (31%), Positives = 190/403 (47%), Gaps = 88/403 (21%)
Query: 21 IISLSPQSRASLAEHFG--ISPLQVFKKLTTFLK-----SLGVKS------IFDTSCSRD 67
+ S+SPQ+RASLA G ++ Q + L L S G K + DT+ +R+
Sbjct: 123 VASVSPQTRASLAAASGPGVTERQAGRMLDRLLMGPEGLSAGGKWGNKFAWVVDTNAARE 182
Query: 68 LTLIEACNEFIARYKQSQESDDERSNSSL--PMLSSACPGWICYAEKQLGSYILPYISSV 125
L+ +E + D S+++ P+L+S+CPGW+CYAEK Y+LP++S V
Sbjct: 183 ACLVLGSDEVL----------DAASSTTPKKPILTSSCPGWVCYAEKTH-PYVLPHLSRV 231
Query: 126 KSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDE 185
KSPQ +G +K + + LG D I+H+ +MPC+DKKLEA+RE+ DS +
Sbjct: 232 KSPQALVGTLLKTTLSRTLGVPADRIWHLALMPCFDKKLEASREELT---DSVWAGDGNP 288
Query: 186 GLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLY----------- 234
G +VD V+T+ EV L + + ++F L SP K D++ H +
Sbjct: 289 GRGTRDVDCVITSKEVFMLTESRGIDFFNLPMSPALKQEQFPDNKIHHFLFPPRQRHRPS 348
Query: 235 GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG--KTLLKFALC 292
AG+SGG + + + + LE RN D E A+ G + L K
Sbjct: 349 RAAGTSGGNLHFIL----QDVLARNPGSRLETTRGRNIDVVEYAVHAGGSNEVLFKAGRY 404
Query: 293 YGFQNLQNIVRKVKMRK----------------------------CDYQFVEVMACPSGC 324
YGF+N+QN+VRK+K K + +VEVMACP GC
Sbjct: 405 YGFRNIQNLVRKLKPAKPSRMPGGKPFGSARRVPTGRAGAAGAATVENTYVEVMACPGGC 464
Query: 325 LNGGGQIKP-------------KPG-QSPKELIKTLETIYLEN 353
NGGGQ+K KPG Q KEL++ ++ Y
Sbjct: 465 TNGGGQVKADDQIIVDRRGYTTKPGPQEQKELLRDVDEAYFSG 507
>gi|166031621|ref|ZP_02234450.1| hypothetical protein DORFOR_01321 [Dorea formicigenerans ATCC
27755]
gi|166028598|gb|EDR47355.1| hydrogenase, Fe-only [Dorea formicigenerans ATCC 27755]
Length = 577
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 202/398 (50%), Gaps = 36/398 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKS 58
+ E+ +E I + K V+ ++P RA+ E G++P K+ LK +G+
Sbjct: 203 LRERSDTNEVWKAIEDPDKIVVAQVAPAVRAAWGEELGLAPEDATVGKIIDALKRMGINY 262
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT++E NEF+ R+ + D PM +S CPGW+ + + Q ++
Sbjct: 263 VFDTTFSADLTIMEEGNEFVKRFTSGELKDR-------PMFTSCCPGWVRFIKSQF-PHL 314
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+ Y+SS KSPQQ GA +K + +KLG P++IY V+VMPC KK E ++D
Sbjct: 315 VKYLSSAKSPQQMFGAVMKTYFAEKLGVSPEKIYTVSVMPCVAKKAER-------EMDLY 367
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
E Y ++D+V+TT E++ +I+ ++ + L + D+ + G ++ G
Sbjct: 368 YEEYAGH-----DIDAVITTRELIRMIRSAHISPQTLVDVESDRPMHEGTGAGVIF---G 419
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDF------REVALEVEGKTLLKFALC 292
++GG E R A + G+ F +R+ F +E ++ T ++ A+
Sbjct: 420 ATGGVMEAALRSAYYIIKGENPPAE-AFTAVRSQGFNENDGVQEANFQINDIT-VRTAVV 477
Query: 293 YGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE 352
G N + ++RK++ + Y FVEVMACP GC+ GGGQ P + + YL+
Sbjct: 478 SGLGNTRELIRKIESGEVHYDFVEVMACPGGCVGGGGQ--PIHDGEERAFERGKNLYYLD 535
Query: 353 -NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
N L +NP V +Y E+ E P S KA +HTE+
Sbjct: 536 RNANLRFSHENPDVIQMYKEYFEAPMSHKAHMLLHTEH 573
>gi|164686674|ref|ZP_02210702.1| hypothetical protein CLOBAR_00269 [Clostridium bartlettii DSM
16795]
gi|164604064|gb|EDQ97529.1| hydrogenase, Fe-only [Clostridium bartlettii DSM 16795]
Length = 455
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 120/385 (31%), Positives = 190/385 (49%), Gaps = 49/385 (12%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K ++ +P R +L E FG+ + K+ LK+L I+DT+ + DLT++E NE
Sbjct: 102 KITMVQCAPAVRVALGEDFGMELGSLTPGKMAAALKALNFDKIYDTNFAADLTIMEEGNE 161
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
I R + +LPM +S CP W+ + E + ++SS KSPQQ GA
Sbjct: 162 LIKRVTEG---------GTLPMFTSCCPAWVKFLETNFPE-LTDHLSSCKSPQQMAGAVF 211
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + + +IY +++MPC KK E R ++DS YRD VD+VL
Sbjct: 212 KTYGAKVNKIDAKDIYSISIMPCTCKKFECDRP----EMDSS--GYRD-------VDAVL 258
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ LI+ ++F +LEE P + L G ++GV +GG E R A + +
Sbjct: 259 TTRELAYLIKDAGIDFNSLEEIPFESPLGVYTGAGTIFGV---TGGVMEAALRTAYEVIT 315
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G+ I ++ +R D FR +++ G+ LK + G +N+ I+ +K K D F+
Sbjct: 316 GEEIP-SIDIPAVRGRDGFRTTEVQI-GELTLKVGVVTGLKNVVPILEDLKSGKLDLHFI 373
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTL-ETIYLE----------NVMLADPFKNPL 364
EVM CP GC++GGGQ PK L++ ET Y N+ L NP
Sbjct: 374 EVMTCPVGCVSGGGQ--------PKLLLEEYRETAYDNRIKATYTHDANLPLRKSHTNPE 425
Query: 365 VRSLYDEWLEQPGSEKAKKHVHTEY 389
+ +Y ++L++P + + +HT+Y
Sbjct: 426 ITKIYSKFLKEPLGKVSHSLLHTKY 450
>gi|336169759|gb|AEI25542.1| FeFe-hydrogenase [Clostridium sp. 3-9]
Length = 572
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 184/380 (48%), Gaps = 38/380 (10%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V+++++P R ++ E F + V KL T L++LG IFD + D+T++E E
Sbjct: 221 KHVVVAMAPAVRTAMGELFNMGFGKDVTGKLYTALRTLGFDKIFDINFGADMTIMEEATE 280
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R K +N PM +S CP W+ A+ +L +SS KSPQQ G
Sbjct: 281 LLQRVK---------NNGPFPMFTSCCPAWVRLAQNYYPD-LLKNLSSAKSPQQIFGTAT 330
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + G P+++Y VT+MPC DKK EA L++ E GL ++D+VL
Sbjct: 331 KTYYPSITGINPEDVYTVTIMPCNDKKYEA-------DLEAMEVN----GLR--QIDAVL 377
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ + F LE+S D + G ++ G++GG E R A
Sbjct: 378 TTRELAKMIKDAKIKFAELEDSEHDPAMGEYSGAGVIF---GATGGVMEAALRTAKDFAE 434
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
+E ++E+ +R + +E +E+ G A+ G N ++ KM + Y F+
Sbjct: 435 NAELE-NVEYTQVRGLEGIKEATVEIAGNN-YNVAVINGAANFFEFMKSGKMDEKQYHFI 492
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELI--KTLETIYL----ENVMLADPFKNPLVRSLY 369
EVMACP GC+NGGGQ P + + +TL L +N+ KNP + +Y
Sbjct: 493 EVMACPGGCVNGGGQ--PHVNAETRSAVDYRTLRASVLYNQDKNLPKRKSHKNPAIVKMY 550
Query: 370 DEWLEQPGSEKAKKHVHTEY 389
+ + +PG A K +H Y
Sbjct: 551 ESYFGKPGEGLAHKLLHHVY 570
>gi|451820352|ref|YP_007456553.1| hydrogenase, Fe-only [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451786331|gb|AGF57299.1| hydrogenase, Fe-only [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 646
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 125/392 (31%), Positives = 203/392 (51%), Gaps = 32/392 (8%)
Query: 10 FLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRD 67
FL N+ K VI ++P R ++ E FG P + V KKL L+ LGV +FDTS D
Sbjct: 276 FLRNLATPNKVVITQMAPAVRVAIGEAFGFEPGENVEKKLAAGLRKLGVDYVFDTSWGAD 335
Query: 68 LTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKS 127
LT++E E R ++ D+ N LP+L+S CP WI + E+ G +L SS KS
Sbjct: 336 LTIMEEAAELQERLEKHLAGDE---NVKLPILTSCCPSWIKFIEQNYGD-MLEVPSSAKS 391
Query: 128 PQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGL 187
P + G K ++ G + +EI V +MPC KK EA+R +F LDS
Sbjct: 392 PMEMFGIVAKEIWAKEKGLKREEISSVAIMPCIAKKYEASRPEFSVNLDS---------- 441
Query: 188 EIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETV 247
+V+ V+TT E++ + Q ++ LE+ +D ++ G ++ G +GG E
Sbjct: 442 ---DVNYVITTRELIKIFQDSGIDLRTLEDEEIDTVMGEYTGAGIIF---GRTGGVIEAA 495
Query: 248 FRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVK 306
R A + + G+ ++ ++EF+ +R D FR +EV+ L+ + +G + ++ KV+
Sbjct: 496 VRTAMENMTGERVD-NIEFEGLRGWDGFRVCEIEVK-DIKLRIGVAHGLREAAKMLDKVR 553
Query: 307 MRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK----N 362
+ + +E+MAC GC+ GGGQ PK ++ E+++ L N+ A + N
Sbjct: 554 SGEEFFHAIEIMACVGGCIGGGGQ--PKIRKNKDEVLQK-RAEGLNNIDRAKTLRRSNEN 610
Query: 363 PLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVK 394
P V ++Y+++L P S KA + +HT Y P K
Sbjct: 611 PEVLAIYEKYLGHPLSNKAHELLHTTYFPRAK 642
>gi|119500160|ref|XP_001266837.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Neosartorya fischeri NRRL 181]
gi|259511269|sp|A1CWD8.1|NAR1_NEOFI RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|119415002|gb|EAW24940.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Neosartorya fischeri NRRL 181]
Length = 597
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 117/369 (31%), Positives = 170/369 (46%), Gaps = 68/369 (18%)
Query: 21 IISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-----------GVKSIFDTSCSRDLT 69
+ S+SPQ RASLA +GI+ + + FL G + DT+ R+
Sbjct: 119 VASVSPQVRASLAATYGITEREAKYMIDQFLMGPHGLRAGGKHGNGFTWVVDTNVMREAV 178
Query: 70 LIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQ 129
L +E + +S P+LSSACPGWICYAEK +ILP++S +KSPQ
Sbjct: 179 LALTADEVTNSLLSTGSGSLPKS----PILSSACPGWICYAEKT-HPFILPHLSRLKSPQ 233
Query: 130 QTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEI 189
G +K + + LG P +I+H+ +MPC+DKKLEA+RE+ + + + +
Sbjct: 234 ALSGTFLKSVLSKALGVSPSQIWHLAIMPCFDKKLEASREELT-DIAWASTSAESQTTPV 292
Query: 190 PEVDSVLTTGEVLDLIQLKAVNFEAL-------------EESPLDKMLTNVDDEGHLYGV 236
+VD V+TT E+L L + ++ L + LD L +
Sbjct: 293 RDVDCVITTRELLTLASARGLSLPNLPLKALPASCSTPFPDQALDSFLFSKSSSDQTVE- 351
Query: 237 AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG-KTLLKFALCYGF 295
+G+SGGY H K + + + RN+D E L G + LLK A YGF
Sbjct: 352 SGTSGGY----LHHVLKIFQARNPGSKIVTQRGRNADVVEYVLMSSGDEPLLKAARYYGF 407
Query: 296 QNLQNIVRKVKMRK--------------------------------CDYQFVEVMACPSG 323
+N+QN+VRK+K + DY +VEVMACP G
Sbjct: 408 RNIQNLVRKLKPARVSRLPGAKPQAVTSSANRRQPMSRNAAPAGTGADYAYVEVMACPGG 467
Query: 324 CLNGGGQIK 332
C NGGGQI+
Sbjct: 468 CTNGGGQIR 476
>gi|373489099|ref|ZP_09579762.1| hydrogenase, Fe-only [Holophaga foetida DSM 6591]
gi|372004575|gb|EHP05214.1| hydrogenase, Fe-only [Holophaga foetida DSM 6591]
Length = 531
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 196/379 (51%), Gaps = 26/379 (6%)
Query: 18 KAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI+ +P +R L E FG+ + V K L+ LG +FDT+ + DLT++E +E
Sbjct: 144 KVVIVQTAPSTRVGLGEEFGMPAGSWVEGKQVAALRRLGFSRVFDTNFTADLTIMEEGSE 203
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
I R +S + LP L+S CPGW+ + E + +P +S+ KSPQQ +GA +
Sbjct: 204 LIERLTG-------KSEAPLPQLTSCCPGWVKFVEYYYPEW-MPNLSTAKSPQQMLGAVL 255
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +K G P I+ V+VMPC KK E+AR +F ++ ++++GL ++D+VL
Sbjct: 256 KTYYAKKTGIDPRTIFSVSVMPCTAKKFESARPEF----NAAGRYWKNDGLR--DIDAVL 309
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
T E+ L++ ++F +L E D +L ++ GS+GG E R A +
Sbjct: 310 TVRELALLMKEAGLDFASLPEESYDSLLGEGSGAALIF---GSTGGVMEAAVRTAYHAVT 366
Query: 257 G-KVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
G K + +R S +E +L+V G + A+ +G N + ++ +VK Y F
Sbjct: 367 GQKAPALAFDLAPVRGLSGVKEASLDVPGHGKVCVAVAHGLHNARTLLDRVKAGTARYDF 426
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIK--TLETIYLENV--MLADPFKNPLVRSLYD 370
+EVM+CP GG P+ P + ++ + ++ +++ L + +N ++ LY
Sbjct: 427 IEVMSCPG--GCIGGGGMPRSSVPPADDVRRSRIRSLQVKDAAGTLRESHENQEIKELYR 484
Query: 371 EWLEQPGSEKAKKHVHTEY 389
+L +P S + + +HT+Y
Sbjct: 485 SFLGRPLSHLSHELLHTDY 503
>gi|392404280|ref|YP_006440892.1| hydrogenase, Fe-only [Turneriella parva DSM 21527]
gi|390612234|gb|AFM13386.1| hydrogenase, Fe-only [Turneriella parva DSM 21527]
Length = 583
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 125/399 (31%), Positives = 199/399 (49%), Gaps = 50/399 (12%)
Query: 13 NINKGKA--VIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLT 69
N +GK ++ ++P R ++ E FG P + KL L+ LG ++FDT+ S D+T
Sbjct: 217 NFLRGKENFTVVQIAPSVRVAIGEEFGYEPGTNLTGKLYAALRRLGFDAVFDTNFSADVT 276
Query: 70 LIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQ 129
++E NEF+ R+K + LP+++S CP W Y EK L S +P SS KSPQ
Sbjct: 277 IMEEANEFVERFKHGKRE--------LPLITSCCPSWTDYMEK-LHSDFIPNFSSTKSPQ 327
Query: 130 QTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEI 189
Q +G K + QK+ P + V++MPC KK E R+ +F ++D
Sbjct: 328 QIMGVLAKTYYAQKMNIDPAGMRMVSIMPCTAKKYEITRDHEMFA-----SGFKD----- 377
Query: 190 PEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFR 249
VD VLTT E+ +I+ ++F L++ D L + G ++ G++GG E R
Sbjct: 378 --VDVVLTTRELARMIRQAGIDFRHLQDHKADSFLGSYSGAGTMF---GTTGGVMEAALR 432
Query: 250 HAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK 309
A L G+ + L F+ IR + + V + ++ A+ +G ++ ++ +V+ K
Sbjct: 433 TAQFILTGEKMP-KLVFEEIRGLEGIKETKVVIAQEEIRIAVAHGLGHVGEVLERVRRAK 491
Query: 310 CD-----YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK--- 361
Y F+EVMACP GC+ GGGQ P + + ++ + D K
Sbjct: 492 ATGEEPPYHFIEVMACPGGCIGGGGQ--------PYRVTDAIRKKRMQGLFADDRDKAVR 543
Query: 362 ----NPLVRSLYDEWLEQPGSEKAKKHVHTEYH--PVVK 394
N V+ +Y+E+LE+P SEKA + +HT YH PV K
Sbjct: 544 CSHDNAEVQQVYNEFLEKPLSEKAHRLLHTTYHARPVYK 582
>gi|400602779|gb|EJP70377.1| iron only hydrogenase large subunit domain-containing protein
[Beauveria bassiana ARSEF 2860]
Length = 614
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 124/388 (31%), Positives = 189/388 (48%), Gaps = 84/388 (21%)
Query: 18 KAVIISLSPQSRASLAEHFG--ISPLQVFKKLTTFLKS-LGVKS----------IFDTSC 64
K ++ S+SPQ+RASLA G I + L T L G+ + DT+
Sbjct: 130 KLLVASVSPQTRASLAAACGPGIGEARAGAMLETLLMGEAGLAGGGSHGSRFAWVVDTNT 189
Query: 65 SRDLTLIEACNEFIARYKQSQESDDERSNSSL------------PMLSSACPGWICYAEK 112
+R++T + + +E S + S SS P+L+S+CPGW+CYAEK
Sbjct: 190 AREMTHVLSADEVFGSGSDSNSNSHLSSTSSSASSSPTAAPAKKPILASSCPGWVCYAEK 249
Query: 113 QLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFV 172
++LP++S VKSPQ +G +K + + LG P I+H+ VMPC+DKKLEA+RE+
Sbjct: 250 TH-PHVLPHLSRVKSPQALMGTLLKTSLSKALGIPPSRIWHLAVMPCFDKKLEASREELT 308
Query: 173 FQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESP------------L 220
++ ++ G + +VD V+T+ EVL L + + ++F L + P L
Sbjct: 309 DEVWARSGR---PGRGVRDVDCVITSKEVLMLAESRGLDFFKLSQEPPRPAMAPFPDPTL 365
Query: 221 DKMLTNVDDE----------GHLYGVAGSSGGYAETVFRHAAKTLFG---KVIEGHLEFK 267
K L D + + AGSSGG + + A G ++I+G
Sbjct: 366 HKFLFRQDAQLPSPSSSVSVPNTPLAAGSSGGLLYHILQSRAAQTPGSEIQIIKG----- 420
Query: 268 TIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK------------------ 309
RN+D E + V+G+ + K A YGF+N+QN+VR++K +
Sbjct: 421 --RNADVVEYVVSVQGEAVFKAARYYGFRNIQNLVRRLKPARPSRMPGGKPFGSARRPTG 478
Query: 310 -----CDYQFVEVMACPSGCLNGGGQIK 332
+Y +VEVMACP GC NGGGQIK
Sbjct: 479 GKSATLEYSYVEVMACPGGCTNGGGQIK 506
>gi|71027077|ref|XP_763182.1| Fe-hydrogenase [Theileria parva strain Muguga]
gi|68350135|gb|EAN30899.1| Fe-hydrogenase, putative [Theileria parva]
Length = 664
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 127/458 (27%), Positives = 197/458 (43%), Gaps = 141/458 (30%)
Query: 21 IISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIAR 80
+IS+SPQ+ L+ H+ + + +KL+ + LG K IFD + L L ++ EFI +
Sbjct: 118 VISISPQTIFMLSSHYNMKAEKALRKLSYLFRFLGAKLIFDIGLAELLALTQSKEEFIYK 177
Query: 81 YKQ-----SQESDDERSNS-------------------SLPMLSSACPGWICYAEKQLGS 116
Y + SD + +N +LP+++S CPGW YAEK L
Sbjct: 178 YNNNTVSSTHSSDLDDTNRMVNGINKDLNNQNYKERRFNLPIITSHCPGWTLYAEKTLDQ 237
Query: 117 YILPYISSVKSPQQTIGATIK------------HHI---------CQKLGFRPD------ 149
+L IS V S Q G +K +HI C F +
Sbjct: 238 DLLNLISKVPSSQVIQGLLVKILSHTINYYNTIYHINYLKLFSSNCFLNSFLTNVNCNSN 297
Query: 150 ---------------EIYHVTVMPCYDKKLEAAREDF---------VFQLDSQEETYRD- 184
++YH++++PCYDKK E R++F ++Q DS T D
Sbjct: 298 SENNIINNFKVTNNTKVYHISIVPCYDKKFETIRKEFQFDIKSLFSLYQSDSNPNTSGDP 357
Query: 185 ---EGLEI-PEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT--------------N 226
+ LE P VD +L+T ++ +++ + F L+E P D ++ N
Sbjct: 358 DDSQALETEPLVDDILSTSDIENILNSLGLKFTQLKEEPPDHLVNFLYYFNKINSIADLN 417
Query: 227 VD-----------DEGHLY------GVAGSSGGYAETVFRHAAKTLFG-KVIEGHLEFKT 268
++ D HL G+ SGG+AE +F+H+ K LF V +L+F
Sbjct: 418 INHNLTLPNYESRDFNHLMKLIRCSGLYSQSGGFAEEIFKHSCKQLFNVDVDNSNLKFME 477
Query: 269 IRNSDFREVA-LEVEGKTLLKFALCYGFQNLQNIVRKVKMRK------------------ 309
N+DF+E L+ LL+F + YGF+N+QNI++ +K RK
Sbjct: 478 TINNDFKECTLLDSNNNVLLRFIIAYGFRNIQNIIKLLKSRKNTGDSSGNYYQNKSDSSG 537
Query: 310 --------CDYQFVEVMACPSGCLNGGGQIKPKPGQSP 339
CDY +E+M+CP GC NG GQ P +P
Sbjct: 538 SSNGSDFVCDY--IELMSCPGGCFNGAGQALQSPQSNP 573
>gi|309777308|ref|ZP_07672270.1| Fe-hydrogenase [Erysipelotrichaceae bacterium 3_1_53]
gi|308914988|gb|EFP60766.1| Fe-hydrogenase [Erysipelotrichaceae bacterium 3_1_53]
Length = 576
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 122/374 (32%), Positives = 194/374 (51%), Gaps = 35/374 (9%)
Query: 21 IISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
I+ ++P RA+ E G+S + +KL + +G +FDT + DLT++E +EF++
Sbjct: 224 IVQIAPAVRAAWGESLGLSRAEATIEKLGDAFRRMGADYVFDTDFAADLTIMEEASEFLS 283
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
R + + E LPM +S CPGW+ + + Q ++ +S+ KSP Q GA K
Sbjct: 284 RLQHTDEH-------KLPMFTSCCPGWVRFLKSQYPD-MVSQLSTSKSPHQMFGAVTKTW 335
Query: 140 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
KLG +IY+++VMPC KK E D DS YRD VD VLTT
Sbjct: 336 FADKLGVDASKIYNISVMPCVAKKHEI---DIPVMQDS---GYRD-------VDVVLTTR 382
Query: 200 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV 259
EV+ +I + ++ L++ PLD L G ++G ++GG E R A + G+
Sbjct: 383 EVIRMIHAEHIDVSYLQDIPLDDPLGTASGAGVIFG---ATGGVMEAALRSAYYFVIGEN 439
Query: 260 IEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVM 318
F +R D ++E A +++G T+ + A+ G N + ++ ++ + Y FVEVM
Sbjct: 440 ANPD-AFTAVRGMDGWKEAAFDIQGITV-RCAIVSGLGNTRRLIEAMRRGEVSYDFVEVM 497
Query: 319 ACPSGCLNGGGQIKPKPGQSPKELIKT-LETIYL--ENVMLADPFKNPLVRSLYDEWLEQ 375
ACP GC GGGQ P ++L ET+Y + L +NP + +LY+E+L +
Sbjct: 498 ACPGGCSGGGGQ----PIHDGEDLAAIRAETLYCLDQQAELRYSHENPSIHTLYEEYLGE 553
Query: 376 PGSEKAKKHVHTEY 389
P SE A+K +HT++
Sbjct: 554 PLSELAEKLLHTDH 567
>gi|323702073|ref|ZP_08113741.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
gi|323532955|gb|EGB22826.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
Length = 657
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 167/322 (51%), Gaps = 29/322 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSI 59
+ S++E + I + K V+ ++P R +L E FG+ + V K+ + L+ +G +
Sbjct: 204 LTSNSSVNEVWAAIRDPRKTVVCQIAPAPRTALGEEFGLGSVDVTGKIVSALRKIGFDRV 263
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
FDT + D+T IE NEF+ R + ++ LP+ +S CPGW+ YAE Q +L
Sbjct: 264 FDTVFAADMTTIEESNEFLDRLAKGEK---------LPIFTSCCPGWVKYAE-QFHPELL 313
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
IS+ +SPQQ G+ +K CQ+LG +P++++ V++MPC KK EA R +F +
Sbjct: 314 DNISTCRSPQQMFGSVLKKKYCQELGIKPEDMFVVSIMPCTAKKYEAKRPEF-----TTA 368
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS 239
+Y +VD+VLTT E + + + FE L ES D+ + G L+ G+
Sbjct: 369 GSY--------DVDAVLTTVEAAQMFREAGIIFEQLPESDFDEPMQQATGSGVLF---GA 417
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQ 299
+GG E+V R+ L EG ++ + +R ++A G L A+ G +
Sbjct: 418 TGGVMESVVRYVTGKLLK--TEGRIDIEFVRGMADTKIATLNVGDNKLTLAVVNGLAAAE 475
Query: 300 NIVRKVKMRKCDYQFVEVMACP 321
++ K+K + + VEVMACP
Sbjct: 476 ALIEKIKSGELEVHAVEVMACP 497
>gi|238916167|ref|YP_002929684.1| NADH dehydrogenase I chain G [Eubacterium eligens ATCC 27750]
gi|238871527|gb|ACR71237.1| NADH dehydrogenase I chain G [Eubacterium eligens ATCC 27750]
Length = 560
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 189/374 (50%), Gaps = 34/374 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N+ ++ ++P RA+ E FG+S ++L L+ +G IFDT+ + D+T++E
Sbjct: 218 NEDIITVVQIAPAVRAAWGEDFGMSKEYATAQRLVAGLRRIGFDYIFDTTFAADMTIMEE 277
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EF+ R + +ES LPM +S CPGW+ + + + + +S+ KSPQQ G
Sbjct: 278 GSEFLERLPEIKES-------GLPMFTSCCPGWVKFVKSEF-PEMAGRLSTAKSPQQMFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + +KLG P++I+ V++MPC KK +E D G +VD
Sbjct: 330 AITKSYYAEKLGVDPEKIFCVSIMPCLAKK---------------DECTWDGG---KDVD 371
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+VLTT EV + + + E L+E D L G ++G ++GG E R A
Sbjct: 372 AVLTTREVERMFKAFFIKPEELDEDEFDNPLGEGTGAGVIFG---ATGGVMEAALRSAYY 428
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ G + F+++R ++E + ++ G T+ A+ G N + +V +K + Y
Sbjct: 429 LVTGNNPDAD-AFQSVRGLEGWKEASFDLNGTTV-NVAVASGLGNTRRLVNAIKKGEVHY 486
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVE+M+CP GC+NGGGQ + +E L + + L +NP V+ Y+E+
Sbjct: 487 DFVEIMSCPGGCINGGGQPYKEDAVMVEERRHVLYGLDKRD-NLRFSHENPSVKQCYEEY 545
Query: 373 LEQPGSEKAKKHVH 386
E+P S +A + +H
Sbjct: 546 FEKPLSHRAHEILH 559
>gi|333995596|ref|YP_004528209.1| iron hydrogenase 1 [Treponema azotonutricium ZAS-9]
gi|333734672|gb|AEF80621.1| iron hydrogenase 1 ([Fe] hydrogenase) (Fe-onlyhydrogenase) (CpI)
[Treponema azotonutricium ZAS-9]
gi|342308737|gb|AEL20841.1| HndA [Treponema azotonutricium ZAS-9]
Length = 585
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 118/388 (30%), Positives = 189/388 (48%), Gaps = 56/388 (14%)
Query: 21 IISLSPQSRASLAEHFGISPLQVF-KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
++ ++P R +LAE FG+ P VF KK+ L+ LG K++FDT+ S DLT++E E +
Sbjct: 227 VVQIAPAVRVALAEEFGLPPGTVFTKKIYAALRRLGFKTVFDTNFSADLTIMEEGTELVK 286
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
R S +P+++S CP W+ Y EK I P S+ KSPQQ +GA IK +
Sbjct: 287 RLTTK--------GSDIPLITSCCPAWVDYMEKYYADMI-PNFSTAKSPQQMMGAMIKAY 337
Query: 140 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
+K G P++IY V+VMPC KK E+ R D + S + +VD V+TT
Sbjct: 338 WAEKAGVDPNKIYSVSVMPCTAKKWESHRND---DMKSAGHGF--------DVDIVITTR 386
Query: 200 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV 259
E+ +I+ + L++ D + G ++GV +GG E R +A L K
Sbjct: 387 ELARMIKQAGIEILKLDDEEADSPMGPYTGAGTIFGV---TGGVMEAAVR-SAYFLVTKK 442
Query: 260 IEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVK-----MRKCDYQ 313
G + F R D +E ++ T +K A+ + N++ ++ K++ ++ Y
Sbjct: 443 ELGDVNFLPARGLDGVKEAEVDFGNGTKIKIAIAHQMGNIEAVLNKIRDARDAGKETPYH 502
Query: 314 FVEVMAC----------PSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFK 361
FVEVMAC P GC + +++ E IY ++ L +
Sbjct: 503 FVEVMACRGGCIGGGGQPYGCTDEVRKLR-------------TEGIYKDDTQSKLRCSHQ 549
Query: 362 NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
NP + +Y E+L +P KA + +HT+Y
Sbjct: 550 NPFITQVYKEFLGEPNGHKAHELLHTKY 577
>gi|406982905|gb|EKE04167.1| hypothetical protein ACD_20C00099G0012 [uncultured bacterium]
Length = 588
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 199/381 (52%), Gaps = 44/381 (11%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI ++P R +L E FG+ P + + LK +G +FDTS + D+T++E E
Sbjct: 227 KFVIAQIAPAVRVALGEAFGLKPGVNTIGLIVAALKKIGFNQVFDTSFAADMTVMEETAE 286
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
FI R + ++ LP+ +S CP W+ +AE + +L +S+ KSPQQ G+
Sbjct: 287 FITRLQNGEK---------LPLFTSCCPAWVRFAELK-HPELLDNLSTCKSPQQMFGSIA 336
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K ++ ++ P+ + V++MPC KK EA R++F + G++ +VD VL
Sbjct: 337 KKYLTKEYNIEPENLTVVSIMPCTAKKAEAQRDEFA-----------ENGIQ--DVDIVL 383
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E++ +I+ ++ +E LD + G ++G SSGG AE V R A + +
Sbjct: 384 TTQELIRMIKEAGIDLNNIEPEELDTPFGILTGAGVIFG---SSGGVAEAVVRTAYEMVT 440
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G +E + R D +E+ ++++G T ++ A+ G Q N+V K+ + Y V
Sbjct: 441 GNALE-KFDITEARGLDKLKELTVDIDG-TKVRIAIVNGLQEASNLVDKINKGEAHYDIV 498
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD-------PFKNPLVRSL 368
EVMACP GC+ GGGQ QS K+ T+++ E + AD +NP V++L
Sbjct: 499 EVMACPGGCIGGGGQ-----SQSCKDC--TIKSSRSEGLYKADKELPIHKSHENPEVQNL 551
Query: 369 YDEWLEQPGSEKAKKHVHTEY 389
Y + L+ P S+ + K +HT Y
Sbjct: 552 YKKLLQSPNSKISHKLLHTRY 572
>gi|333923422|ref|YP_004497002.1| hydrogenase, Fe-only [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333748983|gb|AEF94090.1| hydrogenase, Fe-only [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 657
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 159/304 (52%), Gaps = 28/304 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
K V+ ++P R +L E FG+ + V K+ + L+ +G +FDT + D+T IE NEF
Sbjct: 222 KTVVCQIAPAPRTALGEEFGLGSVDVTGKIVSALRKIGFDRVFDTVFAADMTTIEESNEF 281
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R + ++ LP+ +S CPGW+ YAE Q +L IS+ +SPQQ G+ +K
Sbjct: 282 LDRLAKGEK---------LPIFTSCCPGWVKYAE-QFHPELLDNISTCRSPQQMFGSVLK 331
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
CQ+LG +P++++ V++MPC KK EA R +F + +Y +VD+VLT
Sbjct: 332 KKYCQELGIKPEDMFVVSIMPCTAKKYEAKRPEF-----TTAGSY--------DVDAVLT 378
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
T E + + + FE L ES D+ + G L+ G++GG E+V R+ L
Sbjct: 379 TVEAAQMFREAGIIFEQLPESDFDEPMQQATGSGVLF---GATGGVMESVVRYVTGKLLK 435
Query: 258 KVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
EG ++ + +R ++A G L A+ G + ++ K+K + + VEV
Sbjct: 436 --TEGRIDIEFVRGMADTKIATLNVGDNKLTLAVVNGLAAAEALIEKIKSGELEVHAVEV 493
Query: 318 MACP 321
MACP
Sbjct: 494 MACP 497
>gi|147668873|ref|YP_001213691.1| hydrogenase, Fe-only [Dehalococcoides sp. BAV1]
gi|146269821|gb|ABQ16813.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Dehalococcoides sp. BAV1]
Length = 573
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 127/399 (31%), Positives = 206/399 (51%), Gaps = 40/399 (10%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIF 60
E+ ++D + I + K V++ +P R SL E G+ + V KK+ L+ LG ++F
Sbjct: 207 ERSAVDAVWAAIADPAKHVVVQEAPSIRVSLGEELGLPAGTLVAKKMYAALRRLGFDAVF 266
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + DLT++E +E + R K+ LP L+S CPGW+ + E + P
Sbjct: 267 DTNFTADLTILEEGSELVERVKEG---------GVLPQLTSCCPGWVKFMEHYYPE-LAP 316
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+SS KSPQQ GA K + +K G P I +V+VMPC KK E R +
Sbjct: 317 NVSSAKSPQQMFGAVCKTYYAEKAGIDPKTIVNVSVMPCTAKKFECQRPEM--------- 367
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
D G + +VD VLTT E+ +I+ ++F +L+E P + +L ++ G++
Sbjct: 368 --NDSGFK--DVDYVLTTRELARMIKEAGLDFVSLDEEPAEDLLGLYTGAATIF---GAT 420
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQ 299
GG E R A + G+ +E +L+ + +R + + L V+G LK A+ +G N +
Sbjct: 421 GGVMEAAIRSAYMLITGRELE-NLDIEPVRGLEGVKTATLNVDGLE-LKVAVAHGLGNAR 478
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL-ETIYLENVMLAD 358
++ ++K Y F+E+MACP GC+ GGGQ P + L K E +Y E+ +
Sbjct: 479 ALLEEIKEGTSPYHFIEIMACPGGCVGGGGQ----PIRFDSSLKKKRGEALYEEDRNMPK 534
Query: 359 --PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY--HPVV 393
NP + +Y ++LE+P +++ K +HTEY PVV
Sbjct: 535 RCSHHNPSIAKIYADYLEKPLGKRSHKLLHTEYTSRPVV 573
>gi|402078008|gb|EJT73357.1| cytosolic Fe-S cluster assembly factor nar-1 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 604
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 116/366 (31%), Positives = 179/366 (48%), Gaps = 67/366 (18%)
Query: 21 IISLSPQSRASLAEHF--GISPLQVFKKLTTFLKS-----LGVKS------IFDTSCSRD 67
+ S+SPQSRASLA G+S Q + L L G K + DT+ +RD
Sbjct: 125 VASVSPQSRASLAAACSQGVSESQAGRMLDRLLMGPEGLMAGGKWGNRFEWVVDTNAARD 184
Query: 68 LTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKS 127
L+ +E + R + + ++ P+L+++CPGW+CYAEK ++LP++S VKS
Sbjct: 185 ACLLLGADEVLGRNQTGDAALAKK-----PILTASCPGWVCYAEKTH-PHVLPHLSRVKS 238
Query: 128 PQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGL 187
PQ G IK + + L PD I+H+++MPC+DKKLEA+RE+ + + G
Sbjct: 239 PQALTGTLIKTTLSRVLNIPPDRIWHLSIMPCFDKKLEASREELTEAVWAGNGA---PGR 295
Query: 188 EIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKML---TNVDD-------EGHLYGVA 237
+VD V+T+ E+ L + ++++F +L S L + L + +++ A
Sbjct: 296 GTRDVDCVITSKEIFMLTESRSIDFFSLPASSLRQQLFPDSTINEFFFPQNSRKRPLPAA 355
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE-VALEVEGKTLLKFALCYGFQ 296
GSSGG + + G LE RN D E + G+TL + A YGF+
Sbjct: 356 GSSGGNLYYILQDVLSAHAGS----RLETARGRNVDVVEYTVVAASGETLFRAARYYGFR 411
Query: 297 NLQNIVRKVKMRK------------------------------CDYQFVEVMACPSGCLN 326
N+QN+VRK+K K ++ ++EVMACP GC N
Sbjct: 412 NIQNLVRKLKPAKPSRMPGGKPFGSARRVPTGRGGGGPGGAGGVEHAYIEVMACPGGCTN 471
Query: 327 GGGQIK 332
GGGQ+K
Sbjct: 472 GGGQVK 477
>gi|253576868|ref|ZP_04854193.1| hydrogenase [Paenibacillus sp. oral taxon 786 str. D14]
gi|251843735|gb|EES71758.1| hydrogenase [Paenibacillus sp. oral taxon 786 str. D14]
Length = 582
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 201/385 (52%), Gaps = 43/385 (11%)
Query: 18 KAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K V++ +P R +L E FG+ P+ +V K+ L+ LG +FDT + DLT++E
Sbjct: 222 KFVVVQTAPAVRVALGEEFGM-PIGTRVTGKMVAALRRLGFNKVFDTDFAADLTIMEEGT 280
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
E + R + +LP+++S CPGW+ + E ++ +SS KSP + GA
Sbjct: 281 ELVHRLA---------TGENLPLMTSCCPGWVKFVE-HFFPDMMENLSSCKSPHEMEGAM 330
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
IK + Q +G P I V++MPC KK EA RE+ + +P+VD V
Sbjct: 331 IKSYFAQTMGIDPGNIVVVSIMPCTAKKFEAQREELAHE-------------SLPDVDYV 377
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
LTT E+ +I+ ++F L+ D G ++G ++GG AE R + +
Sbjct: 378 LTTRELARMIKEAGIDFVNLKGETFDNPFGEASGAGVIFG---ATGGVAEAALRTVFELV 434
Query: 256 FGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
G+ +E +E+ +R D +E +E+ +++ A+ +G N + ++ ++ + Y+F
Sbjct: 435 AGEELE-TVEYTAVRGMDGMKETTVELPDGRMIRTAVVHGLGNARKLMSMIQSGQRQYEF 493
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIK-TLE-------TIYLEN--VMLADPFKNPL 364
+EVMACP GC+ GGGQ P G S ++ ++ TL+ IY E+ + KNP
Sbjct: 494 IEVMACPGGCICGGGQ--PIVGASLRDTLRDTLDVKAARAKAIYDEDEASTVRKSHKNPY 551
Query: 365 VRSLYDEWLEQPGSEKAKKHVHTEY 389
++ +Y E+LE+P S K+ K++HT Y
Sbjct: 552 IQQIYREFLEKPNSHKSHKYLHTHY 576
>gi|380495190|emb|CCF32587.1| cytosolic Fe-S cluster assembly factor NAR1 [Colletotrichum
higginsianum]
Length = 589
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 114/362 (31%), Positives = 179/362 (49%), Gaps = 57/362 (15%)
Query: 18 KAVIISLSPQSRASLAEHFGISPL-----QVFKKLTTFLKSL--------GVKSIFDTSC 64
K + S+SPQ+RASLA G + ++L + + L G + DT+
Sbjct: 123 KLFVASVSPQTRASLAAAAGGGTTEEEAGHMLERLLSGPEGLASAGKHRNGFTWVLDTNV 182
Query: 65 SRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
+R+ L+ +E + + + + P+L+S+CPGW+CYAEK Y+LP++S
Sbjct: 183 AREACLVLGADEVLGAERAPASTAAAATK---PILTSSCPGWVCYAEKTH-PYVLPHLSR 238
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
VKSPQ +G +K + +KLG P I+H+ VMPC+DKKLEA+RE+ + +
Sbjct: 239 VKSPQALMGTLLKTTLSKKLGIPPSRIWHLAVMPCFDKKLEASREELT------DSVWAG 292
Query: 185 EGLE---IPEVDSVLTTGEVLDLIQLKAVNFEALEESPL--------DKMLTNVDDEGHL 233
+GL + +VD V+T+ EVL L + + +NF + S L D L + GH
Sbjct: 293 DGLPGRGVRDVDCVITSKEVLMLAESRGLNFFDVPRSKLNHQRPLFPDARLASFLFPGHG 352
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE-VALEVEGKTLLKFALC 292
+ + G + +++ K + ++ RN+D E + G + K A
Sbjct: 353 AHRSSRAAGTSGGNLYFTLQSVASKHPDSQIQVVRGRNADVVEFIVASSTGDPIFKAARY 412
Query: 293 YGFQNLQNIVRKVKMRK----------------------CDYQFVEVMACPSGCLNGGGQ 330
YGF+N+QN+VRK+K + +Y +VEVMACP GC NGGGQ
Sbjct: 413 YGFRNIQNLVRKLKPARPSRMPGGKAFGAARRPTGKSAGLEYAYVEVMACPGGCTNGGGQ 472
Query: 331 IK 332
IK
Sbjct: 473 IK 474
>gi|289432125|ref|YP_003461998.1| hydrogenase, Fe-only [Dehalococcoides sp. GT]
gi|288945845|gb|ADC73542.1| hydrogenase, Fe-only [Dehalococcoides sp. GT]
Length = 573
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 127/399 (31%), Positives = 206/399 (51%), Gaps = 40/399 (10%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIF 60
E+ ++D + I + K V++ +P R SL E G+ + V KK+ L+ LG ++F
Sbjct: 207 ERSAVDAVWAAIADPAKHVVVQEAPSIRVSLGEELGLPAGTLVAKKMYAALRRLGFDAVF 266
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + DLT++E +E + R K+ LP L+S CPGW+ + E + P
Sbjct: 267 DTNFTADLTILEEGSELVERVKEG---------GVLPQLTSCCPGWVKFMEHYY-PELAP 316
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+SS KSPQQ GA K + +K G P I +V+VMPC KK E R +
Sbjct: 317 NVSSAKSPQQMFGAVCKTYYAEKAGIDPKTIVNVSVMPCTAKKFECQRPEM--------- 367
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
D G + +VD VLTT E+ +I+ ++F +L+E P + +L ++ G++
Sbjct: 368 --NDSGFK--DVDYVLTTRELARMIKEAGLDFVSLDEEPAEDLLGLYTGAATIF---GAT 420
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQ 299
GG E R A + G+ +E +L+ + +R + + L V+G LK A+ +G N +
Sbjct: 421 GGVMEAAIRSAYMLITGRELE-NLDIEPVRGLEGVKTATLNVDGLE-LKVAVAHGLGNAR 478
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL-ETIYLENVMLAD 358
++ ++K Y F+E+MACP GC+ GGGQ P + L K E +Y E+ +
Sbjct: 479 ALLEEIKEGTSPYHFIEIMACPGGCVGGGGQ----PIRFDSSLKKKRGEALYEEDRNMPK 534
Query: 359 --PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY--HPVV 393
NP + +Y ++LE+P +++ K +HTEY PVV
Sbjct: 535 RCSHHNPSIAKIYADYLEKPLGKRSHKLLHTEYTSRPVV 573
>gi|452203011|ref|YP_007483144.1| [FeFe] hydrogenase catalytic subunit [Dehalococcoides mccartyi
DCMB5]
gi|452110070|gb|AGG05802.1| [FeFe] hydrogenase catalytic subunit [Dehalococcoides mccartyi
DCMB5]
Length = 573
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 127/399 (31%), Positives = 206/399 (51%), Gaps = 40/399 (10%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIF 60
E+ ++D + I + K V++ +P R SL E G+ + V KK+ L+ LG ++F
Sbjct: 207 ERSAVDAVWAAIADPAKHVVVQEAPSIRVSLGEELGLPAGTLVAKKMYAALRRLGFDAVF 266
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + DLT++E +E + R K+ LP ++S CPGW+ + E + P
Sbjct: 267 DTNFTADLTILEEGSELVERVKEG---------GVLPQITSCCPGWVKFMEHYYPE-LAP 316
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+SS KSPQQ GA K + +K G P I +V+VMPC KK E R +
Sbjct: 317 NVSSAKSPQQMFGAVCKTYYAEKAGIDPKTIVNVSVMPCTAKKFECQRPEM--------- 367
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
D G + +VD VLTT E+ +I+ ++F +L+E P + +L ++ G++
Sbjct: 368 --NDSGFK--DVDYVLTTRELARMIKEAGLDFVSLDEEPAEDLLGLYTGAATIF---GAT 420
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQ 299
GG E R A + G+ +E +L+ + +R + + L V+G LK A+ +G N +
Sbjct: 421 GGVMEAAIRSAYMLITGRELE-NLDIEPVRGLEGVKTATLNVDGLE-LKVAVAHGLGNAR 478
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL-ETIYLENVMLAD 358
++ ++K Y F+E+MACP GC+ GGGQ P + L K E +Y E+ +
Sbjct: 479 ALLEEIKEGTSPYHFIEIMACPGGCVGGGGQ----PIRFDSSLKKKRGEALYEEDRNMPK 534
Query: 359 --PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY--HPVV 393
NP V +Y ++LE+P +++ K +HTEY PVV
Sbjct: 535 RCSHHNPSVEKIYADYLEKPLGKRSHKLLHTEYTSRPVV 573
>gi|158258984|dbj|BAF82036.1| Fe-hydrogenase [Pseudotrichonympha grassii]
Length = 467
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 126/391 (32%), Positives = 187/391 (47%), Gaps = 40/391 (10%)
Query: 7 LDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCS 65
L E L N KGK + +P R +L+E FG V + KL LK +G +FDTS +
Sbjct: 105 LLESLKN-KKGKVFVAQTAPAIRVNLSEIFGFPVGTVTEGKLVASLKKIGFDYVFDTSFA 163
Query: 66 RDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSV 125
DLT+ E EF+ R K+ PM +S CP W+ Y EK ++P +SS
Sbjct: 164 ADLTIAEEATEFVERVKK---------GGVFPMFTSCCPAWVNYVEKS-NPQLIPNLSSC 213
Query: 126 KSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDE 185
KSP +GA IK + P I V++MPC KK EA R + DE
Sbjct: 214 KSPMSMLGALIKTDFAKIKKIDPRSIVSVSIMPCTAKKDEARRSEL-----------SDE 262
Query: 186 GLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAE 245
+ D V++T E+ LI+ K ++++ + + DK+ G ++G SSGG E
Sbjct: 263 SGQ--NTDIVISTRELARLIKSKKIDYKKIPDQKYDKLYAEYTGGGVIFG---SSGGVME 317
Query: 246 TVFRHAAKTLFGKVIEGHLEFKTIRNSD----FREVALEVEGKTLLKFALCYGFQNLQNI 301
R A + L G + L+ IR F EV + G T+ K A+C G N + +
Sbjct: 318 AALRSAYQILTGNPLS-QLDILPIRAGKDGIKFSEV--HINGSTV-KVAVCQGVANAKKL 373
Query: 302 VRKVKMRK---CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD 358
V K++ + D +FVEVMACP GC+NGGG K K ++ ++ L + N+
Sbjct: 374 VEKIQKKDPSVADLKFVEVMACPGGCVNGGGSSKAKNAKAVQDRAGALYKLD-SNLKQRV 432
Query: 359 PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
N ++ LY L+ GS +A + +HT +
Sbjct: 433 SLDNSELKELYRRSLKGFGSHEAHEILHTHF 463
>gi|154287306|ref|XP_001544448.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408089|gb|EDN03630.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 630
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 176/377 (46%), Gaps = 66/377 (17%)
Query: 17 GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-----------GVKSIFDTSCS 65
GK + S+SPQ+RASLA +GIS + + FL G + DT+
Sbjct: 129 GKIFVASVSPQARASLAATYGISEREAGYLIEQFLSGPDGLRAGGAYGNGFTWVIDTNVM 188
Query: 66 RDLTLIEACNEFIARYKQSQESDDER-SNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
R + L + +E S+++ E P+LSSACPGWICYAEK ++LP+IS
Sbjct: 189 RQVCLELSVSEVTESLNSSKDTLIETFPAPKRPVLSSACPGWICYAEKT-HPHVLPHISR 247
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
+KSPQ G +K + + L +I+H+ +MPC+DKKLEA+R++ +
Sbjct: 248 LKSPQALTGTLLKTVLSKALNISSAQIWHLAIMPCFDKKLEASRQELTDASWQDASSMTQ 307
Query: 185 EGLE-------IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLY--- 234
+G + +VD V+T+ E+L L + ++ L PL + + +
Sbjct: 308 KGSAPTESHSPVRDVDCVITSRELLMLATSRNISLRNLPLQPLPSPSVPLFPDPYFAPFL 367
Query: 235 ----------GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEG 283
AG+SGGY H T + ++ + RNSD E AL G
Sbjct: 368 FPKSSQFVQPSAAGTSGGY----LYHILTTYQHRNPGSQIQTQRGRNSDVIEYALISPSG 423
Query: 284 KTLLKFALCYGFQNLQNIVRKVKMRKC----------------------------DYQFV 315
T++K A YGF+N+QN+VRK+K + DY ++
Sbjct: 424 DTIIKAARYYGFRNIQNLVRKLKPPRASRLPGANPMIGRRAGGGCAATVSSTSATDYAYI 483
Query: 316 EVMACPSGCLNGGGQIK 332
EVMACP GC NGGGQI+
Sbjct: 484 EVMACPGGCTNGGGQIR 500
>gi|452204429|ref|YP_007484558.1| [FeFe] hydrogenase catalytic subunit [Dehalococcoides mccartyi
BTF08]
gi|452111485|gb|AGG07216.1| [FeFe] hydrogenase catalytic subunit [Dehalococcoides mccartyi
BTF08]
Length = 573
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 128/399 (32%), Positives = 206/399 (51%), Gaps = 40/399 (10%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIF 60
E+ ++D + I + K V++ +P R SL E G+ + V KK+ L+ LG ++F
Sbjct: 207 ERSAVDAVWAAIADPAKHVVVQEAPSIRVSLGEELGLPAGTLVAKKMYAALRRLGFDAVF 266
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + DLT++E +E + R K+ LP ++S CPGW+ + E + P
Sbjct: 267 DTNFTADLTILEEGSELVERVKEG---------GVLPQITSCCPGWVKFMEHYYPE-LAP 316
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+SS KSPQQ GA K + +K G P I +V+VMPC KK E R +
Sbjct: 317 NVSSAKSPQQMFGAVCKTYYAEKAGIDPKTIVNVSVMPCTAKKFECQRPEM--------- 367
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
D G + +VD VLTT E+ +I+ ++F +L+E P + +L ++ G++
Sbjct: 368 --NDSGFK--DVDYVLTTRELARMIKEAGLDFVSLDEEPAEDLLGLYTGAATIF---GAT 420
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQ 299
GG E R A + G+ +E +L+ + +R + + L V+G LK A+ +G N +
Sbjct: 421 GGVMEAAIRSAYMLITGRELE-NLDIEPVRGLEGVKTATLNVDGLE-LKVAVAHGLGNAR 478
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL-ETIYLE--NVML 356
++ ++K Y F+E+MACP GC+ GGGQ P + L K E +Y E N+
Sbjct: 479 ALLEEIKEGTSPYHFIEIMACPGGCVGGGGQ----PIRFDSSLKKKRGEALYEEDRNMPK 534
Query: 357 ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY--HPVV 393
NP V +Y ++LE+P +++ K +HTEY PVV
Sbjct: 535 RCSHHNPSVEKIYADYLEKPLGKRSHKLLHTEYTSRPVV 573
>gi|366165979|ref|ZP_09465734.1| hydrogenase [Acetivibrio cellulolyticus CD2]
Length = 594
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 180/376 (47%), Gaps = 34/376 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI+ +P R +L E FG+ + K+ T LK +G +FDT D+T++E +E
Sbjct: 243 KHVIVQTAPAVRVALGELFGMEAGSIVTGKMVTALKRMGFDGVFDTDFGADITVMEEASE 302
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI-LPYISSVKSPQQTIGAT 135
I R K + +LP+L++ CP W+ + E Q I +P S+ KSP G+
Sbjct: 303 LIYRIKNKK---------TLPILTNCCPAWVKFIEHQFPELIHIP--STCKSPHIMFGSI 351
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
K + +K G PD I V+VMPC KK EA R + + VD V
Sbjct: 352 AKTYYAEKNGLDPDNIVVVSVMPCIAKKAEAKRPELTKDAHNN-------------VDIV 398
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
+TT E+ +I+ + F+ L +S D+ L ++G AG G E V R A + L
Sbjct: 399 ITTRELGAMIREAGIEFDRLPDSEFDRPLGETTGASVIFGTAG---GVIEAVMRTACEWL 455
Query: 256 FGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G+ ++ +EF+ +R + A G K + G N + I+ ++ K DY +
Sbjct: 456 TGEPLK-KVEFEELRGLEGVRKATVKIGDQEFKIGIASGLGNARMILEDIRDGKADYHAI 514
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWL 373
E+MACP GC+ GGGQ P + + + K E IY E N + +N V LY +L
Sbjct: 515 EIMACPGGCVAGGGQ--PYHHGNNEIIKKRREAIYEEDKNKKIRKSHENKEVLELYKNYL 572
Query: 374 EQPGSEKAKKHVHTEY 389
+P E A + +HT +
Sbjct: 573 GEPFGEDAHELLHTHF 588
>gi|57235003|ref|YP_180897.1| [Fe] hydrogenase, large subunit HymC [Dehalococcoides ethenogenes
195]
gi|57225451|gb|AAW40508.1| [Fe] hydrogenase, large subunit HymC, putative [Dehalococcoides
ethenogenes 195]
Length = 573
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 125/403 (31%), Positives = 208/403 (51%), Gaps = 48/403 (11%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIF 60
E+ ++D + I + K V++ +P R SL E G+ + V KK+ L+ LG ++F
Sbjct: 207 ERSAVDAVWAAIADPTKHVVVQEAPSVRVSLGEELGLPAGTLVAKKMYAALRRLGFDAVF 266
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + DLT++E +E + R K LP ++S CPGW+ + E + P
Sbjct: 267 DTNFTADLTIMEEGSELVERVKDG---------GVLPQITSCCPGWVKFMEHYY-PELAP 316
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+SS KSPQQ GA K + +K G P +I +V+VMPC KK E R +
Sbjct: 317 NVSSAKSPQQMFGAVCKTYYAEKSGIDPKDIINVSVMPCTAKKFECQRPEM--------- 367
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
D G + +VD VLTT E+ +I+ ++F +L+E P + +L ++ G++
Sbjct: 368 --NDSGFK--DVDYVLTTRELARMIKEAGLDFASLDEEPAEDLLGLYTGAATIF---GAT 420
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQ 299
GG E R A + G+ +E +L+ + +R + + ++ ++G +K A+ +G N +
Sbjct: 421 GGVMEAAIRSAYTLITGRELE-NLDIEPVRGLEGIKTASVNIDGLE-VKVAVAHGLGNAR 478
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL-----ETIYLENV 354
+++ ++K Y F+E+MACP GC+ GGGQ P TL E +Y E+
Sbjct: 479 HLLDEIKEGVSPYHFIEIMACPGGCVGGGGQ--------PIRFDSTLKKKRGEALYEEDR 530
Query: 355 MLAD--PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY--HPVV 393
+A NP V +Y ++LE+P +++ K +HTEY PVV
Sbjct: 531 NMAKRCSHHNPSVEKIYKDYLEKPLGKRSHKLLHTEYTSRPVV 573
>gi|328955433|ref|YP_004372766.1| hydrogenase, Fe-only [Coriobacterium glomerans PW2]
gi|328455757|gb|AEB06951.1| hydrogenase, Fe-only [Coriobacterium glomerans PW2]
Length = 585
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 192/379 (50%), Gaps = 36/379 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
+ ++ ++P R + E FG++P Q ++L L+ +G IFDTS S DLT++E +E
Sbjct: 221 RICLVQIAPAVRTAWGETFGLAPGQATVERLAAALRMVGFDYIFDTSFSADLTIMEEASE 280
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R K++ ES + + + PM +S CPGW+ Y + ++ +S+ KSPQQ GA
Sbjct: 281 LLERLKRAGESGE---HPTFPMFTSCCPGWVRYVKDHY-PELVDQLSTSKSPQQMFGAIA 336
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + Q LG P +I+ V++MPC KK EAA T D P+VD L
Sbjct: 337 KTYYAQALGVDPSKIFSVSIMPCVAKKAEAALPSM---------TGADGA---PDVDVAL 384
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
T EV +++ ++ L++ PLD+ L G +G S+GG + R A
Sbjct: 385 TVREVCRMVKACHIDVAKLDDEPLDQPLGTHTGAGVAFG---STGGVMDAALRSAYYFAT 441
Query: 257 GKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVE 316
G+ + F +R D + A G LK A+ +G N +N++ +K + Y FVE
Sbjct: 442 GERCDAD-AFSDVRGMDGWKEATFTMGDKALKVAVVHGLANARNLLDALKSGEVGYDFVE 500
Query: 317 VMACPSGC-------LNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLY 369
VMACP GC ++ G ++ + G E++ L+ + L ++NP ++ Y
Sbjct: 501 VMACPGGCVGGGGQPIHDGMELAGERG----EVLWGLD----RSSNLRRSYENPAIQMCY 552
Query: 370 DEWLEQPGSEKAKKHVHTE 388
++L P SE+A++ +HT+
Sbjct: 553 ADYLGAPLSERAEELLHTD 571
>gi|297616733|ref|YP_003701892.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680]
gi|297144570|gb|ADI01327.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680]
Length = 563
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 131/401 (32%), Positives = 210/401 (52%), Gaps = 46/401 (11%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTF---LKSLGV 56
+ EK+ +D FL I + K V+ ++P R ++AE G+ + + TF L+ LG
Sbjct: 196 ITEKEEIDRFLEAIADPEKIVVTQIAPAVRVAVAEEVGMETGSL--DMLTFVAGLRQLGF 253
Query: 57 KSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGS 116
+F T+ + DLT++E NE + R K+ +LPML+S PGWI + E
Sbjct: 254 DYVFHTNFTADLTIMEEGNELLKRLKE---------GGTLPMLTSCSPGWINFIETFYPE 304
Query: 117 YILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLD 176
LP++S+ KSPQQ GA +K + K+G P +I+ V++MPC KK EA R +
Sbjct: 305 Q-LPHLSTCKSPQQMFGALVKTYWADKMGIDPAKIFSVSIMPCTAKKYEATRPEM----- 358
Query: 177 SQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGV 236
RD G + +VD VLTT EV L ++ V F+ L+ S D ++ G G
Sbjct: 359 ------RDSGYQ--DVDLVLTTREVGRLFRMCGVGFDKLQPSNFDSLM------GAYTGA 404
Query: 237 A---GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALC 292
A G+SGG E R + + GK +E + F +R + +E ++++G T +K A+
Sbjct: 405 AVIFGASGGVMEAALRTVYEVVTGKTLE-DVNFTAVRGFEGMKEAEVDLDG-TKVKVAVA 462
Query: 293 YGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE 352
+ I+ ++K Y F+E+M CP GC+ GGGQ P P K ++ ++ IY+E
Sbjct: 463 NSLGCARKIMEEIKAGTSPYHFIEIMCCPGGCIGGGGQ--PIPSTVAKR-VERIKGIYIE 519
Query: 353 N--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
+ + L +NP V+ LY+++L +P K+ + +HT Y P
Sbjct: 520 DEGLPLRKSHENPEVKLLYEDFLHEPLGHKSHELLHTHYTP 560
>gi|346979535|gb|EGY22987.1| LET1 protein [Verticillium dahliae VdLs.17]
Length = 588
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 108/313 (34%), Positives = 155/313 (49%), Gaps = 49/313 (15%)
Query: 55 GVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQL 114
G + DT+ +R+ L+ +E + K + SD + P L+S CPGW+CYAEK
Sbjct: 175 GFTWVLDTNVAREACLVLGADEVLGTDKAAASSDPK------PTLTSNCPGWVCYAEKTH 228
Query: 115 GSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQ 174
++LP+IS VKSPQ +G +K + +KL P I+H+ VMPC+DKKLEA+RE+
Sbjct: 229 -PHVLPHISKVKSPQALMGTLLKTTLSRKLNIPPSRIWHLAVMPCFDKKLEASREELT-- 285
Query: 175 LDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEES------------PLDK 222
DS G I +VD V+T+ EVL L + +F +L + LD+
Sbjct: 286 -DSVWAGDGKPGRGIRDVDCVITSKEVLMLADSRGFDFFSLARTNPSLTRQLFPDPQLDR 344
Query: 223 MLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFRE-VALEV 281
L +AGSSGG +++ K ++ RN+D E +
Sbjct: 345 FLFPPQPAHRDKPIAGSSGGN----LYFTLQSVVSKNPGSQIQVIRGRNADVTEYIVASG 400
Query: 282 EGKTLLKFALCYGFQNLQNIVRKVKMRK----------------------CDYQFVEVMA 319
G+ + K A YGF+N+QN+VRK+K + +Y FVEVMA
Sbjct: 401 AGEPIFKAARFYGFRNIQNLVRKLKPARPSRMPGGKPFGSARRPTGKTAGLEYTFVEVMA 460
Query: 320 CPSGCLNGGGQIK 332
CP GC NGGGQIK
Sbjct: 461 CPGGCTNGGGQIK 473
>gi|449107435|ref|ZP_21744089.1| hydrogenase, Fe-only [Treponema denticola ASLM]
gi|451969127|ref|ZP_21922356.1| hydrogenase, Fe-only [Treponema denticola US-Trep]
gi|448961635|gb|EMB42330.1| hydrogenase, Fe-only [Treponema denticola ASLM]
gi|451701995|gb|EMD56429.1| hydrogenase, Fe-only [Treponema denticola US-Trep]
Length = 596
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 119/398 (29%), Positives = 202/398 (50%), Gaps = 37/398 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKS 58
+ E+ ++F + N K V++ ++P R + EH G+ K+ LK +G
Sbjct: 203 LRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGADY 262
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT++E EFI R+ + + D PM +S CPGW+ + + Q ++
Sbjct: 263 VFDTAFSADLTIMEEAYEFIERFSKGELKDK-------PMFTSCCPGWVRFIKSQY-PHL 314
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+ ++SS KSP Q GA +K + +K+G +P++I+ V +MPC KK E + E F +
Sbjct: 315 VSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKGEISMELFYGEYAGH 374
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
++D VLTT E + +I+ + E L+E+ DK+ + G ++ G
Sbjct: 375 ------------DMDCVLTTREFVRMIKSAHILPETLKETEPDKLFHDASGAGIIF---G 419
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTL----LKFALCYG 294
++GG E R A + GK FK +R+S E + TL L+ A+ G
Sbjct: 420 ATGGVMEAALRTAYYAIMGKNCPPD-AFKVVRHSSQEESGIIEASFTLKENNLRIAVTSG 478
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYL-- 351
N + ++ ++ + Y FVE+MACP GC+ GGGQ P EL +K +Y
Sbjct: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQ----PIHESGELAVKRGSNLYFID 534
Query: 352 ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+N + +N +++LY+++ E+P S KA +HT++
Sbjct: 535 KNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
>gi|449109329|ref|ZP_21745965.1| hydrogenase, Fe-only [Treponema denticola ATCC 33520]
gi|448959137|gb|EMB39859.1| hydrogenase, Fe-only [Treponema denticola ATCC 33520]
Length = 596
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 119/398 (29%), Positives = 202/398 (50%), Gaps = 37/398 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKS 58
+ E+ ++F + N K V++ ++P R + EH G+ K+ LK +G
Sbjct: 203 LRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGADY 262
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT++E EFI R+ + + D PM +S CPGW+ + + Q ++
Sbjct: 263 VFDTAFSADLTIMEEAYEFIERFSKGELKDK-------PMFTSCCPGWVRFIKSQY-PHL 314
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+ ++SS KSP Q GA +K + +K+G +P++I+ V +MPC KK E + E F +
Sbjct: 315 VSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKGEISMELFYGEYAGH 374
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
++D VLTT E + +I+ + E L+E+ DK+ + G ++ G
Sbjct: 375 ------------DMDCVLTTREFVRMIKSAHILPETLKETEPDKLFHDASGAGIIF---G 419
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTL----LKFALCYG 294
++GG E R A + GK FK +R+S E + TL L+ A+ G
Sbjct: 420 ATGGVMEAALRTAYYAIMGKNCPPD-AFKVVRHSSQEESGIIEASFTLKENNLRIAVTSG 478
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYL-- 351
N + ++ ++ + Y FVE+MACP GC+ GGGQ P EL +K +Y
Sbjct: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQ----PIHESGELAVKRGSNLYFID 534
Query: 352 ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+N + +N +++LY+++ E+P S KA +HT++
Sbjct: 535 KNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
>gi|379012527|ref|YP_005270339.1| iron hydrogenase HydA1 [Acetobacterium woodii DSM 1030]
gi|375303316|gb|AFA49450.1| iron hydrogenase HydA1 [Acetobacterium woodii DSM 1030]
Length = 583
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 119/384 (30%), Positives = 187/384 (48%), Gaps = 43/384 (11%)
Query: 18 KAVIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75
K VI+ +P RA+L E FG P+ V K+ L+ LG +FDT D+ ++E
Sbjct: 224 KTVIVQTAPAVRAALGEEFGY-PMGTSVTGKMAAALRRLGFDKVFDTDFGADVCIMEEGT 282
Query: 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGAT 135
E I R + LPM++S PGWI + E I P++SS KSPQ GA
Sbjct: 283 ELIGRVT---------NGGVLPMITSCSPGWIKFIETYYPEAI-PHLSSCKSPQNITGAL 332
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
+K+H Q P ++ V++MPC KK E RE+ ++ +VD
Sbjct: 333 LKNHYAQTNNIDPKDMVVVSIMPCTAKKYEVQREELCTDGNA-------------DVDIS 379
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA---GSSGGYAETVFRHAA 252
+TT E+ +I+ + F L + D D G G A G++GG E R A
Sbjct: 380 ITTRELARMIKEARILFNKLPDEDFD------DYYGESTGAAVIFGATGGVMEAAVRTVA 433
Query: 253 KTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK-C 310
L K I+ ++++ +R D ++ ++EV + + +G N++ ++ ++K +
Sbjct: 434 DVLNKKDIQ-EIDYQIVRGVDGIKKASVEVTPDLTVNLVVAHGGANIREVMEQLKAGELA 492
Query: 311 DYQFVEVMACPSGCLNGGGQ--IKPKPGQSPKELIKTLETIYLE--NVML-ADPFKNPLV 365
D F+E+MACP GC+NGGGQ + K + + +Y E NV+ +NP V
Sbjct: 493 DTHFIELMACPGGCVNGGGQPIVSAKDKMDIDIRTERAKALYDEDANVLTYRKSHQNPSV 552
Query: 366 RSLYDEWLEQPGSEKAKKHVHTEY 389
LY+E+LE+P S KA +HT+Y
Sbjct: 553 IRLYEEYLEEPNSPKAHHILHTKY 576
>gi|404369095|ref|ZP_10974441.1| hydrogenase, Fe-only [Fusobacterium ulcerans ATCC 49185]
gi|313688386|gb|EFS25221.1| hydrogenase, Fe-only [Fusobacterium ulcerans ATCC 49185]
Length = 680
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 124/388 (31%), Positives = 201/388 (51%), Gaps = 26/388 (6%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
NK K VI S SP R +L E FG+ + + K+ + L++LG I DT+ + DLT++E
Sbjct: 88 NKDKIVIFSTSPSVRVALGEEFGMEKGSLVEGKMVSLLRALGGNYILDTNFAADLTIVEE 147
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+E I R + LP +S CP W+ YAE ILP +S+ KSP G
Sbjct: 148 ASELIQRITTG--------SKPLPQFTSCCPAWVKYAE-IYHPEILPNLSTAKSPIGMQG 198
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE-IPEV 192
TIK + +K+ P++I +V V PC KK E R D ++ + G+E + ++
Sbjct: 199 PTIKTYFAKKMNIDPEKIVNVAVTPCTAKKFEIRR-------DEMKDAGKKLGIEDMRDM 251
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D V+TT E+ + V+F+ALEES DK++ G ++G ++GG E R A
Sbjct: 252 DYVITTRELALWAKEAGVDFKALEESSFDKVMGESTGAGIIFG---NTGGVMEAALRTAY 308
Query: 253 KTLFGKVIEGHL-EFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
+ + + L E K +R +E ++V G + A+ YG +N ++ KVK +
Sbjct: 309 EYVTHEKAPADLFELKEVRGMGGIKEAGIKV-GDLTVNVAVIYGTENADKVIEKVKNGEK 367
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSL 368
Y F+EVM CP GC+ GGGQ K + + K ++++Y ++ + + +N + +L
Sbjct: 368 SYHFIEVMTCPGGCIGGGGQPKDLDAERDEINQKRIDSLYKKDTLTPIRSSHENSEIIAL 427
Query: 369 YDEWLEQPGSEKAKKHVHTEYHPVVKSI 396
Y E+ P SE A++ +HT+Y+ K +
Sbjct: 428 YKEFYGHPLSELAEEMLHTQYYDRSKEL 455
>gi|114567942|ref|YP_755096.1| (Fe) hydrogenase large subunit HymC [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114338877|gb|ABI69725.1| (Fe) hydrogenase, large subunit HymC, putative [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
Length = 563
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 128/396 (32%), Positives = 203/396 (51%), Gaps = 36/396 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKS 58
++E + ++EFL+ + + K VI ++P R ++AE GI+ + L+ LG
Sbjct: 196 IIENEEVEEFLAAVADPEKIVITQIAPAVRVAVAEELGITTGALDMLNFVAGLRQLGFDY 255
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+F T+ + DLT++E NE + R K+ +LPML+S PGWI + E
Sbjct: 256 VFHTNFTADLTILEEGNELLKRLKEG---------GTLPMLTSCSPGWINFIETFYPDQ- 305
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L ++S+ KSPQQ GA K + +K+G P +IY V++MPC KK EA R +
Sbjct: 306 LDHLSTCKSPQQMFGALAKTYWAEKMGIDPAKIYSVSIMPCTAKKFEAQRPEM------N 359
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+RD VD VLTT EV L ++ ++ LE S D +L G ++ G
Sbjct: 360 ASGFRD-------VDLVLTTREVGKLFRMGGAYWDKLEPSNFDSLLGAYTGAGVIF---G 409
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
+SGG E R + + G+ +E + F +R ++ +++ G T +K A+
Sbjct: 410 ASGGVMEAALRTVYEVVTGQTLE-DVNFTGVRGFESMKKAEVDLSG-TKVKVAVANSLGA 467
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VM 355
+ I+ ++K Y F+EVM CP GC+ GGGQ P KE I E IY+E+ +
Sbjct: 468 ARKIMDEIKAGTSPYHFIEVMCCPGGCIGGGGQPIPSTIAKKKERI---EAIYVEDEGLP 524
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
L NP V+ LY+++L++P K+ + +HT YHP
Sbjct: 525 LRKSHDNPEVKKLYEDFLKEPLGHKSHELLHTHYHP 560
>gi|414153008|ref|ZP_11409335.1| Iron hydrogenase 1 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
gi|411455390|emb|CCO07237.1| Iron hydrogenase 1 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
Length = 658
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/317 (31%), Positives = 168/317 (52%), Gaps = 29/317 (9%)
Query: 6 SLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSC 64
++DE + I N K VI ++P RA+L E FG+ + V KK+ L+ +G +FDT
Sbjct: 210 AIDEVWAAIRNPKKTVICQIAPAPRAALGEEFGLGSVDVTKKIVAALRKIGFDKVFDTVF 269
Query: 65 SRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
+ D+T IE NEF++R + ++ LP+ +S CPGW+ YAE Q +L +SS
Sbjct: 270 TADMTTIEEANEFLSRLVKGEK---------LPLFTSCCPGWVKYAE-QFHPELLNNLSS 319
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
+SPQQ G+ +K ++LG P +++ V++MPC KK EA R +F+ E Y
Sbjct: 320 CRSPQQMFGSLLKKKYAKELGIAPQDMFVVSIMPCTAKKYEAKRPEFM-----TEGAY-- 372
Query: 185 EGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYA 244
+VD+VLTT E + + + F +L +S D+ + G L+ G++GG
Sbjct: 373 ------DVDAVLTTVEAARMFREAGIIFSSLADSEFDQPMQQATGSGVLF---GTTGGVM 423
Query: 245 ETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRK 304
E+V R+ A + EG ++ + R + ++A G+ L A+ G + +++K
Sbjct: 424 ESVVRYVAGKMLNA--EGRVDVEFTRGMENTKIAGINVGEHKLTLAVVNGLAAAEELIKK 481
Query: 305 VKMRKCDYQFVEVMACP 321
++ + + VEVMACP
Sbjct: 482 IQSGQIEVHAVEVMACP 498
>gi|168211789|ref|ZP_02637414.1| [Fe] hydrogenase [Clostridium perfringens B str. ATCC 3626]
gi|170710254|gb|EDT22436.1| [Fe] hydrogenase [Clostridium perfringens B str. ATCC 3626]
Length = 696
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/394 (30%), Positives = 197/394 (50%), Gaps = 34/394 (8%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K VI+S SP R SL E F ++ + K+ L+ LG + DT+ + D+T++E
Sbjct: 89 KDKIVIVSTSPAVRVSLGEEFNMNDGSFVQGKMIALLRKLGFDYVLDTNFAADMTIVEEA 148
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
+E + R ++N LP +S CP W+ YAE IL +IS+ KSP G
Sbjct: 149 SELVERIT--------KNNKPLPQFTSCCPAWVKYAE-TFHQEILDHISTSKSPIGMQGP 199
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
TIK + +K+G P +I +V + PC KK E RE ++++ Y E + ++D
Sbjct: 200 TIKTYFAKKMGIDPSKIVNVALTPCTAKKFEIKRE----EMNASGRYYGIENMR--DMDY 253
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
V+TT EV + K ++F +LE+S DK++ G ++ ++GG E R A K
Sbjct: 254 VITTREVAIWAKEKGIDFNSLEDSNFDKLMGEASGAGVIFA---NTGGVMEAALRTAYKY 310
Query: 255 LFGKV-------IEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKM 307
+ + +E + +R + F+ LE+ A+ YG +N + K+K
Sbjct: 311 ITKEDPPKDFYDLESVRGMEGVREASFKINDLEI------NIAVIYGTENASKFISKMKN 364
Query: 308 RKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLV 365
Y F+EVM CP GC+ GGGQ K K + K K ++ +Y N+ L ++N +
Sbjct: 365 EDKKYHFIEVMTCPGGCIGGGGQPKDKKFEGDKLREKRIDGLYKRDSNMKLRVSYENEEI 424
Query: 366 RSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 399
+ LY+E+ E+P S A++ +HT Y K + +
Sbjct: 425 KKLYEEFYEKPLSNLAEEMLHTTYFDRSKDLGGE 458
>gi|321262240|ref|XP_003195839.1| iron hydrogenase [Cryptococcus gattii WM276]
gi|317462313|gb|ADV24052.1| iron hydrogenase, putative [Cryptococcus gattii WM276]
Length = 650
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 173/320 (54%), Gaps = 56/320 (17%)
Query: 12 SNINKGKAVIISLSPQSRASLAEHFG-------ISPLQVFKKLTTFLKS--LGVKSIFDT 62
S +K + I+S+SPQ+ ASL+ + IS L + +++ FL G ++DT
Sbjct: 119 SPCHKPRLSILSISPQTLASLSAAYATASSRSPISLLVLLRRIRAFLSQPEKGAWRVWDT 178
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
+ +R ++L E+ EF R +ES ++ +PML+SACPGW+CYAEK G +LP +
Sbjct: 179 TFARHMSLRESMVEFHER----KESKEKGKAVEMPMLASACPGWVCYAEKAQGD-MLPLL 233
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
S+ +S Q +GA K +L ++PDEIYHVT MPCYDKKLEA+R DF L S
Sbjct: 234 SAARSSQGIVGALAKSWYGHQLQYKPDEIYHVTAMPCYDKKLEASRSDFYSSLYSTR--- 290
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFE--------------ALEESPLDKMLTNVD 228
+VD VLTTGE LDL+ LK + F+ A E+SP ++LT+
Sbjct: 291 --------DVDCVLTTGE-LDLL-LKELGFDPYVPVANESTPSCSATEDSPFPELLTH-- 338
Query: 229 DEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALE--VEGKT 285
EG SSG Y +T+ ++ + + IR S D E ++ V G+
Sbjct: 339 -EG------SSSGSYLQTIIYDVQRSHPNPT---RITTREIRGSTDNVEYLIQDTVTGQV 388
Query: 286 LLKFALCYGFQNLQNIVRKV 305
+ K A YGF+NLQN+VRKV
Sbjct: 389 IFKGAKVYGFRNLQNLVRKV 408
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 308 RKCDYQFVEVMACPSGCLNGGGQIKPK-PGQSPKELIKTLETIY 350
RK D FVEVMACP GC+NGGGQ+KP P S E ++ E Y
Sbjct: 470 RKLD--FVEVMACPGGCVNGGGQMKPTVPTPSAPEAMEVDEEGY 511
>gi|295669482|ref|XP_002795289.1| iron-sulfur cluster assembly associated protein Nar1
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226285223|gb|EEH40789.1| iron-sulfur cluster assembly associated protein Nar1
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 627
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 178/373 (47%), Gaps = 68/373 (18%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCSR 66
K I S+SPQ RASLA FGIS + + FL G + DT+ R
Sbjct: 127 KIFIASVSPQVRASLAATFGISERKAGYLIEQFLSGPQGLRAGGAHGSGFTWVVDTNVMR 186
Query: 67 DLTLIEACNEFIARYKQSQE------SDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
++ L + E K+S E S +E P+LSS CPGWICYAEK ++LP
Sbjct: 187 NVCLELSVTEV----KESLEIPGNTISGEEFPVPKRPILSSICPGWICYAEKT-HPHVLP 241
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
++S +KSPQ G +K + + L P I+H+ +MPC+DKKLEA+R++ Q
Sbjct: 242 HMSRIKSPQALTGTLLKSVLRKALNISPCHIWHLAIMPCFDKKLEASRQELT-NASWQGL 300
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL-DKMLTNVDD---EGHLY-- 234
++ + + +VD V+T+ E+L L + ++ L PL +T D E L+
Sbjct: 301 SWTESHTPVRDVDCVITSRELLMLATSRNISLLNLPMKPLPPSSITPFPDTYLEPFLFPK 360
Query: 235 -------GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE-GKTL 286
AG SGGY H T + H++ + RNSD E AL G T+
Sbjct: 361 SLPHVQSPAAGPSGGY----LYHILTTYQRRNPGSHIQTQRGRNSDVIEYALTSNSGDTI 416
Query: 287 LKFALCYGFQNLQNIVRKVKMRK---------------------------CDYQFVEVMA 319
+K A YGF+N+QN+VRK+K + D ++EVMA
Sbjct: 417 IKAARYYGFRNIQNLVRKLKPPRTSRLPGAKPIIARRAAGAGSVAGNASVTDCSYIEVMA 476
Query: 320 CPSGCLNGGGQIK 332
CP GC NGGGQ++
Sbjct: 477 CPGGCTNGGGQVR 489
>gi|15893326|ref|NP_346675.1| hydrogene dehydrogenase [Clostridium acetobutylicum ATCC 824]
gi|337735237|ref|YP_004634684.1| hydrogene dehydrogenase [Clostridium acetobutylicum DSM 1731]
gi|384456746|ref|YP_005669166.1| Hydrogene dehydrogenase [Clostridium acetobutylicum EA 2018]
gi|15022848|gb|AAK78015.1|AE007516_6 Hydrogene dehydrogenase [Clostridium acetobutylicum ATCC 824]
gi|557064|gb|AAB03723.1| hydrogenase I [Clostridium acetobutylicum ATCC 824]
gi|325507435|gb|ADZ19071.1| Hydrogene dehydrogenase [Clostridium acetobutylicum EA 2018]
gi|336292537|gb|AEI33671.1| hydrogene dehydrogenase [Clostridium acetobutylicum DSM 1731]
Length = 582
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 181/381 (47%), Gaps = 39/381 (10%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI++++P R ++ E F + V KL T L+ LG +FD + D+T++E E
Sbjct: 222 KHVIVAMAPSVRTAMGELFKMGYGKDVTGKLYTALRMLGFDKVFDINFGADMTIMEEATE 281
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R K +N PM +S CP W+ A+ +L +SS KSPQQ G
Sbjct: 282 LLGRVK---------NNGPFPMFTSCCPAWVRLAQ-NYHPELLDNLSSAKSPQQIFGTAS 331
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + G P+++Y VT+MPC DKK EA D F + + RD +D+ L
Sbjct: 332 KTYYPSISGIAPEDVYTVTIMPCNDKKYEA---DIPFM---ETNSLRD-------IDASL 378
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ + F LE+ +D + G ++ G++GG E R A
Sbjct: 379 TTRELAKMIKDAKIKFADLEDGEVDPAMGTYSGAGAIF---GATGGVMEAAIRSAKDFAE 435
Query: 257 GKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
K +E ++++ +R +E +E+ G L A+ G N ++ KM + Y F+
Sbjct: 436 NKELE-NVDYTEVRGFKGIKEAEVEIAGNK-LNVAVINGASNFFEFMKSGKMNEKQYHFI 493
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELI--KTLETIYLEN-----VMLADPFKNPLVRSL 368
EVMACP GC+NGGGQ P +E + + L L N + NP + +
Sbjct: 494 EVMACPGGCINGGGQ--PHVNALDRENVDYRKLRASVLYNQDKNVLSKRKSHDNPAIIKM 551
Query: 369 YDEWLEQPGSEKAKKHVHTEY 389
YD + +PG A K +H +Y
Sbjct: 552 YDSYFGKPGEGLAHKLLHVKY 572
>gi|73748099|ref|YP_307338.1| [Fe] hydrogenase, large subunit HymC [Dehalococcoides sp. CBDB1]
gi|73659815|emb|CAI82422.1| putative [Fe] hydrogenase, large subunit HymC [Dehalococcoides sp.
CBDB1]
Length = 573
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 126/399 (31%), Positives = 206/399 (51%), Gaps = 40/399 (10%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIF 60
E+ ++D + I + K V++ +P R SL E G+ + V KK+ L+ LG ++F
Sbjct: 207 ERSAVDAVWAAIADPAKHVVVQEAPSIRVSLGEELGLPAGTLVAKKMYAALRRLGFDAVF 266
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + DLT++E +E + R K+ LP ++S CPGW+ + E + P
Sbjct: 267 DTNFTADLTILEEGSELVERVKEG---------GVLPQITSCCPGWVKFMEHYYPE-LAP 316
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+SS KSPQQ GA K + +K G P I +V+VMPC KK E R +
Sbjct: 317 NVSSAKSPQQMFGAVCKTYYAEKAGIDPKTIVNVSVMPCTAKKFECQRPEM--------- 367
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
D G + +VD VLTT E+ +I+ ++F +L+E P + +L ++ G++
Sbjct: 368 --NDSGFK--DVDYVLTTRELARMIKEAGLDFVSLDEEPAEDLLGLYTGAATIF---GAT 420
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQ 299
GG E R A + G+ +E +L+ + +R + + L V+G LK A+ +G N +
Sbjct: 421 GGVMEAAIRSAYMLITGRELE-NLDIEPVRGLEGVKTATLNVDGLE-LKVAVAHGLGNAR 478
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL-ETIYLENVMLAD 358
++ ++K Y F+E+MACP GC+ GGGQ P + L K E +Y E+ +
Sbjct: 479 ALLEEIKEGTSPYHFIEIMACPGGCVGGGGQ----PIRFDSSLKKKRGEALYEEDRNMPK 534
Query: 359 --PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY--HPVV 393
NP + +Y ++LE+P +++ K +HTEY PVV
Sbjct: 535 RCSHHNPSIAKIYADYLEKPLGKRSHKLLHTEYTSRPVV 573
>gi|302659012|ref|XP_003021201.1| hypothetical protein TRV_04632 [Trichophyton verrucosum HKI 0517]
gi|291185089|gb|EFE40583.1| hypothetical protein TRV_04632 [Trichophyton verrucosum HKI 0517]
Length = 597
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 120/386 (31%), Positives = 182/386 (47%), Gaps = 83/386 (21%)
Query: 17 GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCS 65
GK + S+SPQ RASLA +GIS + FL G + DT+
Sbjct: 105 GKIFVASVSPQVRASLAATYGISETNAGYMIEQFLSGPNGLRAGGQHGSGFSWVVDTNIM 164
Query: 66 RDLTL-------IEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
R L E+ N+ A S + D+ S + P+L+S+CPGWICYAEK ++
Sbjct: 165 RQAVLELSTAEVTESLND--AAPTTSHDESDKFSLPNRPILASSCPGWICYAEKTH-PHV 221
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
LP++S +KSPQ G +K I +KL P +++H+ +MPC+DKKLEA+R++
Sbjct: 222 LPHLSRLKSPQALTGTFLKTIISKKLNISPSQVWHLAIMPCFDKKLEASRQELT------ 275
Query: 179 EETYRDEGLE-----IPEVDSVLTTGEVLDLIQLKAVNFEA-------------LEESPL 220
+ ++R E L+ + +VD V+T+ E+L L + ++ + + +
Sbjct: 276 DVSWRGEALDTASSPVRDVDCVITSKELLMLASSRNISLPSLPLEPLPTHLSTPFPDQTI 335
Query: 221 DKML-TNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL 279
K L TN AG SGGY H T K + ++ + RN+D E L
Sbjct: 336 AKFLSTNNTLHSTQPAAAGPSGGY----LHHLLTTYQSKHADSIIQSQRGRNADVVEYTL 391
Query: 280 -EVEGKTLLKFALCYGFQNLQNIVRKVKMRKC---------------------------- 310
G+ ++K A YGF+N+QN+VRK+K +
Sbjct: 392 VSATGEPIIKAARYYGFRNIQNLVRKLKPARASRLPGSRVNGSGTRARPAPVSNGKPGAP 451
Query: 311 ----DYQFVEVMACPSGCLNGGGQIK 332
++ +VEVMACP GC NGGGQI+
Sbjct: 452 IPPTEFAYVEVMACPGGCTNGGGQIR 477
>gi|168216086|ref|ZP_02641711.1| [Fe] hydrogenase [Clostridium perfringens NCTC 8239]
gi|182381892|gb|EDT79371.1| [Fe] hydrogenase [Clostridium perfringens NCTC 8239]
Length = 696
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 122/396 (30%), Positives = 200/396 (50%), Gaps = 36/396 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K K VI+S SP R SL E F ++ + K+ L+ LG + DT+ + D+T++E
Sbjct: 88 DKDKIVIVSTSPAVRVSLGEEFNMNDGSFVQGKMIALLRKLGFDYVLDTNFAADMTIVEE 147
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+E + R ++N LP +S CP W+ YAE IL +IS+ KSP G
Sbjct: 148 ASELVERIT--------KNNKPLPQFTSCCPAWVKYAE-TFHPEILEHISTSKSPIGMQG 198
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE-IPEV 192
TIK + +K+G P +I +V + PC KK E RE ++++ Y G+E + ++
Sbjct: 199 PTIKTYFAKKMGIDPSKIVNVALTPCTAKKFEIKRE----EMNASGRYY---GIEDMRDM 251
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D V+TT EV + K ++F +LE+S DK++ G ++ ++GG E R A
Sbjct: 252 DYVITTREVAIWAKEKGIDFNSLEDSNFDKLMGEASGAGVIFA---NTGGVMEAALRTAY 308
Query: 253 KTLFGKV-------IEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKV 305
K + + +E + +R + F+ LE+ A+ YG +N + K+
Sbjct: 309 KYITKEDPPKDFYDLESVRGMEGVREASFKINDLEI------NIAVIYGTENASKFISKM 362
Query: 306 KMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNP 363
K Y F+EVM CP GC+ GGGQ K K + K K ++ +Y N+ L ++N
Sbjct: 363 KNSDKKYHFIEVMTCPGGCIGGGGQPKDKKFEGDKLREKRIDGLYKRDSNMKLRVSYENE 422
Query: 364 LVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 399
++ LY+E+ E+P S A++ +HT Y K + +
Sbjct: 423 EIKKLYEEFYEKPLSNLAEEMLHTTYFDRSKDLGGE 458
>gi|371777621|ref|ZP_09483943.1| hydrogenase, Fe-only [Anaerophaga sp. HS1]
Length = 589
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/381 (31%), Positives = 200/381 (52%), Gaps = 30/381 (7%)
Query: 14 INKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
++ K V++ +P RA+L E FG+ P V K+ + LK LG +FDT + DLT++E
Sbjct: 224 VDPQKTVVVQTAPAVRAALGEAFGMEPGTLVTGKMVSALKKLGFDYVFDTDFAADLTIME 283
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI-LPYISSVKSPQQT 131
EF+ R + + D + LP+L+S CP W+ + E Q I +P S+ KSPQQ
Sbjct: 284 EGTEFLDRLTRYLDGD---KSVKLPILTSCCPAWVKFFEHQFPEMIDIP--STAKSPQQM 338
Query: 132 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 191
GA K + +KL + +++ V+VMPC KK E RE+F D+ +
Sbjct: 339 FGAIAKSYFAKKLNKKREDLVVVSVMPCLAKKYECTREEFAINGDA-------------D 385
Query: 192 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHA 251
V+ +TT E+ LI+ ++F +L++ D+ L G ++ G++GG E R A
Sbjct: 386 VNVSITTRELARLIRNANIDFASLDDEDFDQPLGESTGAGVIF---GTTGGVIEAAVRTA 442
Query: 252 AKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
+ GK +E +EF+ +R + R+ ++ +G L + +G N + ++ V+ K
Sbjct: 443 YELHTGKHLE-KVEFEELRGMEGLRKATVDFDGMK-LNIGIAHGLGNARKLLEDVRAGKS 500
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV--MLADPFKNPLVRSL 368
++ +E+MACP GC+ GGGQ P + L K + IY E+ + +NP ++ L
Sbjct: 501 EFHAIEIMACPGGCIGGGGQ--PYHHGNVDILKKRQKAIYREDAGKAIRKSHENPFIQEL 558
Query: 369 YDEWLEQPGSEKAKKHVHTEY 389
Y E+L +P S+ + + +HT Y
Sbjct: 559 YSEFLGRPLSDLSHELLHTHY 579
>gi|168212325|ref|ZP_02637950.1| [Fe] hydrogenase [Clostridium perfringens CPE str. F4969]
gi|170716012|gb|EDT28194.1| [Fe] hydrogenase [Clostridium perfringens CPE str. F4969]
Length = 696
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 123/396 (31%), Positives = 200/396 (50%), Gaps = 36/396 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K K VI+S SP R SL E F ++ + K+ L+ LG + DT+ + D+T++E
Sbjct: 88 DKDKIVIVSTSPAVRVSLGEEFNMNDGSFVQGKMIALLRKLGFNYVLDTNFAADMTIVEE 147
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+E + R ++N LP +S CP WI YAE IL +IS+ KSP G
Sbjct: 148 ASELVERIT--------KNNKPLPQFTSCCPAWIKYAE-TFHPEILEHISTSKSPIGMQG 198
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE-IPEV 192
TIK + +K+G P +I +V + PC KK E RE ++++ Y G+E + +V
Sbjct: 199 PTIKTYFAKKMGIDPSKIVNVALTPCTAKKFEIKRE----EMNASGRYY---GIEDMRDV 251
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D V+TT EV + K ++F +LE+S DK++ G ++ ++GG E R A
Sbjct: 252 DYVITTREVAIWAKEKEIDFNSLEDSNFDKLMGEASGAGVIFA---NTGGVMEAALRTAY 308
Query: 253 KTLFGKV-------IEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKV 305
K + + +E + +R + F+ LE+ A+ YG +N + K+
Sbjct: 309 KYITKEDPPKDFYDLESVRGMEGVREASFKINDLEI------NIAVIYGTENASKFISKM 362
Query: 306 KMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNP 363
K Y F+EVM CP GC+ GGGQ K K + K K ++ +Y N+ L ++N
Sbjct: 363 KNEDKKYHFIEVMTCPGGCIGGGGQPKDKKFEGDKLREKRIDGLYKRDSNMKLRVSYENE 422
Query: 364 LVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 399
++ LY+++ E+P S A++ +HT Y K + +
Sbjct: 423 EIKKLYEKFYEKPLSNLAEEMLHTTYFDRSKDLGGE 458
>gi|417959526|ref|ZP_12602321.1| Hydrogenase-1, partial [Candidatus Arthromitus sp. SFB-1]
gi|380333157|gb|EIA23803.1| Hydrogenase-1, partial [Candidatus Arthromitus sp. SFB-1]
Length = 564
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 184/376 (48%), Gaps = 33/376 (8%)
Query: 20 VIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
VI++++P R +L E F + + V K+ T L+ +G IFD + DLT++E E +
Sbjct: 210 VIVAMAPSVRTALGELFKMDYGVDVTNKIYTALRKIGFDKIFDLNFGADLTIMEEATELV 269
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
+ K + +++ PM +S CPGW+ AE +L S+ KSPQQ GA K
Sbjct: 270 NKIKNN--------DTNFPMFTSCCPGWVRLAENYFPE-LLDNFSTAKSPQQIFGAASKS 320
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ P +++ VT+MPC KK EA R + V + G I +D+V+TT
Sbjct: 321 YYPAIENLDPKKVFTVTIMPCTAKKFEADRPEMV-----------NNG--IRNIDAVITT 367
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E +++ ++F +LE+ LD+ + G ++GV +GG E R A L K
Sbjct: 368 REFGRMLKELKIDFSSLEDGELDEAMGLYTGAGAIFGV---TGGVMEAALRSAKDMLENK 424
Query: 259 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
++ +E+K +R + +E +E+ K A+ G N +++ + K Y F+EV
Sbjct: 425 DLD-KIEYKDVRGFEGIKEATVEINNKEYT-VAVVNGASNFFKMMKDNLLEKKQYHFIEV 482
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWL 373
MAC GC+NGGGQ P K K L L +N+ NP + +YD ++
Sbjct: 483 MACYGGCINGGGQPYVTPEMRSKIDYKKLRGNVLYNQDKNLKYRKSHHNPALLKMYDTYM 542
Query: 374 EQPGSEKAKKHVHTEY 389
+PG A + +H +Y
Sbjct: 543 GKPGKGLAHEILHQKY 558
>gi|342732583|ref|YP_004771422.1| hydrogenase [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|384455975|ref|YP_005668570.1| iron hydrogenase [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|417962131|ref|ZP_12604404.1| Hydrogenase-1 [Candidatus Arthromitus sp. SFB-2]
gi|417965694|ref|ZP_12607182.1| Hydrogenase-1 [Candidatus Arthromitus sp. SFB-4]
gi|417969101|ref|ZP_12610063.1| Hydrogenase-1 [Candidatus Arthromitus sp. SFB-co]
gi|418016010|ref|ZP_12655575.1| ferredoxin hydrogenase [Candidatus Arthromitus sp. SFB-mouse-NYU]
gi|418372837|ref|ZP_12964929.1| Hydrogenase-1 [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|342330038|dbj|BAK56680.1| hydrogenase [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|345506345|gb|EGX28639.1| ferredoxin hydrogenase [Candidatus Arthromitus sp. SFB-mouse-NYU]
gi|346984318|dbj|BAK79994.1| iron hydrogenase [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380331061|gb|EIA22172.1| Hydrogenase-1 [Candidatus Arthromitus sp. SFB-2]
gi|380335972|gb|EIA26051.1| Hydrogenase-1 [Candidatus Arthromitus sp. SFB-4]
gi|380338470|gb|EIA27357.1| Hydrogenase-1 [Candidatus Arthromitus sp. SFB-co]
gi|380342506|gb|EIA30951.1| Hydrogenase-1 [Candidatus Arthromitus sp. SFB-mouse-SU]
Length = 579
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 184/376 (48%), Gaps = 33/376 (8%)
Query: 20 VIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
VI++++P R +L E F + + V K+ T L+ +G IFD + DLT++E E +
Sbjct: 225 VIVAMAPSVRTALGELFKMDYGVDVTNKIYTALRKIGFDKIFDLNFGADLTIMEEATELV 284
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
+ K + +++ PM +S CPGW+ AE +L S+ KSPQQ GA K
Sbjct: 285 NKIKNN--------DTNFPMFTSCCPGWVRLAENYFPE-LLDNFSTAKSPQQIFGAASKS 335
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ P +++ VT+MPC KK EA R + V + G I +D+V+TT
Sbjct: 336 YYPAIENLDPKKVFTVTIMPCTAKKFEADRPEMV-----------NNG--IRNIDAVITT 382
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E +++ ++F +LE+ LD+ + G ++GV +GG E R A L K
Sbjct: 383 REFGRMLKELKIDFSSLEDGELDEAMGLYTGAGAIFGV---TGGVMEAALRSAKDMLENK 439
Query: 259 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
++ +E+K +R + +E +E+ K A+ G N +++ + K Y F+EV
Sbjct: 440 DLD-KIEYKDVRGFEGIKEATVEINNKEYT-VAVVNGASNFFKMMKDNLLEKKQYHFIEV 497
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWL 373
MAC GC+NGGGQ P K K L L +N+ NP + +YD ++
Sbjct: 498 MACYGGCINGGGQPYVTPEMRSKIDYKKLRGNVLYNQDKNLKYRKSHHNPALLKMYDTYM 557
Query: 374 EQPGSEKAKKHVHTEY 389
+PG A + +H +Y
Sbjct: 558 GKPGKGLAHEILHQKY 573
>gi|150391798|ref|YP_001321847.1| hydrogenase, Fe-only [Alkaliphilus metalliredigens QYMF]
gi|149951660|gb|ABR50188.1| hydrogenase, Fe-only [Alkaliphilus metalliredigens QYMF]
Length = 551
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 167/314 (53%), Gaps = 32/314 (10%)
Query: 20 VIISLSPQSRASLAEHFGISPL--QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEF 77
V++ +P RA+L E FG+ P+ +V K+ LK LG +FDT+ DLT++E +E
Sbjct: 226 VVVQTAPAVRAALGEEFGL-PIGSRVTGKMVASLKRLGFDQVFDTNFGADLTIMEEGHEL 284
Query: 78 IARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIK 137
+ R + +N LPM++S PGW+ Y E +I +S+ KSP Q +GA IK
Sbjct: 285 LHRLQ---------NNGKLPMITSCSPGWVRYCEFNYPEFI-ENLSTCKSPHQMLGAIIK 334
Query: 138 HHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLT 197
+ +K P +I+ V++MPC KK EAAR + +GL +VD+VLT
Sbjct: 335 SYYAEKQQIDPKKIFVVSIMPCTSKKSEAARPEMTV-----------DGLR--DVDAVLT 381
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
T E+ +I+ + F LE++ D L G ++ G++GG E R A TL G
Sbjct: 382 TRELAKMIKQARIEFLKLEDAEFDPALGEYTGAGAIF---GATGGVMEAALRTLADTLTG 438
Query: 258 KVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVE 316
+ +E +E+ IR + +E + + G+T +K A+ +G ++ +K + +Y F+E
Sbjct: 439 QELE-EIEYHNIRGVAGIKEAEINLGGQT-IKIAVVHGTAMASKLLEMIKSGEKEYHFIE 496
Query: 317 VMACPSGCLNGGGQ 330
+M C GC+ GGGQ
Sbjct: 497 IMGCSGGCVTGGGQ 510
>gi|302502469|ref|XP_003013225.1| hypothetical protein ARB_00410 [Arthroderma benhamiae CBS 112371]
gi|291176788|gb|EFE32585.1| hypothetical protein ARB_00410 [Arthroderma benhamiae CBS 112371]
Length = 597
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 182/384 (47%), Gaps = 79/384 (20%)
Query: 17 GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCS 65
GK + S+SPQ RASLA +GIS + FL G + DT+
Sbjct: 105 GKIFVASVSPQVRASLAATYGISEKNAGYMIEQFLSGPNGLRAGGQHGSGFTWVVDTNIM 164
Query: 66 RDLTLIEACNEFIARYKQSQ--ESDDERSNSSLP---MLSSACPGWICYAEKQLGSYILP 120
R L + +E + S DE SLP +L+S+CPGWICYAEK ++LP
Sbjct: 165 RQAVLELSTDEVTESLNDAAPTTSHDESGKFSLPNRPILASSCPGWICYAEKTH-PHVLP 223
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
++S +KSPQ +G +K I +KL P +++H+ +MPC+DKKLEA+R++ +
Sbjct: 224 HLSRLKSPQALMGTFLKTIISKKLNISPSQVWHLAIMPCFDKKLEASRQELT------DV 277
Query: 181 TYRDEGLE-----IPEVDSVLTTGEVLDLIQLKAVNFEA-------------LEESPLDK 222
++R E L+ + +VD V+T+ E+L L + ++ + + + +
Sbjct: 278 SWRGEALDKASSPVRDVDCVITSKELLMLASSRNISLPSLPLEPLPTHLSTPFPDQTIAQ 337
Query: 223 MLTNVDD-EGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-E 280
L+N + AG SGGY H T K + ++ + RN+D E L
Sbjct: 338 FLSNNNTLHSTQPAAAGPSGGY----LHHLLTTYQSKHADSIIQSQRGRNADVVEYTLVS 393
Query: 281 VEGKTLLKFALCYGFQNLQNIVRKVKMRKC------------------------------ 310
G+ ++K A YGF+N+QN+VRK+K +
Sbjct: 394 ATGEPIIKAARYYGFRNIQNLVRKLKPARASRLPGSRVNGSGARARPAPVSNGKPGAPIP 453
Query: 311 --DYQFVEVMACPSGCLNGGGQIK 332
++ +VEVMACP GC NGGGQI+
Sbjct: 454 PTEFAYVEVMACPGGCTNGGGQIR 477
>gi|309777113|ref|ZP_07672077.1| putative [Fe] hydrogenase, large subunit HymC [Erysipelotrichaceae
bacterium 3_1_53]
gi|308915122|gb|EFP60898.1| putative [Fe] hydrogenase, large subunit HymC [Erysipelotrichaceae
bacterium 3_1_53]
Length = 572
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 192/381 (50%), Gaps = 27/381 (7%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+ K V+ SP R SL E FG+ P V +++ L++LG +FDT+ + DLT++E
Sbjct: 88 DNSKKVVAITSPSVRVSLGEEFGMQPGSYVEEQMVGSLRALGFDYVFDTTFAADLTIMEE 147
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+E I R + ++ LP +S CP W+ + E +LP IS+ KSP
Sbjct: 148 ASELIERIQ---------TDKPLPQFTSCCPAWVKFVETYYPE-LLPNISTSKSPISMFA 197
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
TIK +K P++IY V + PC KK E RE+ S Y D + D
Sbjct: 198 PTIKTWFAEKESLDPNDIYVVAITPCTAKKFEIVREEL-----SDAANYLDRE-SAQDCD 251
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E+ + ++ + ++ E +EES D ++ G ++G ++GG E R A
Sbjct: 252 RVVTTRELANWMRARNLDLEHIEESDYDALMPRGSGAGIIFG---NTGGVMEAAIRSAYY 308
Query: 254 TLFGKVIEGHL-EFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
L K L + + +R + R+ L ++ LK A+ +G N + + +K+ K
Sbjct: 309 FLTKKQPSDELLKLEAVRGMAGVRKAELVIQN-IPLKVAVIHGTDNARKFLHHLKVSKEH 367
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT-LETIYLEN--VMLADPFKNPLVRSL 368
+ FVEVM CP GC++GGGQ K G+ + K ++T+Y ++ V L + NP ++ +
Sbjct: 368 FDFVEVMTCPGGCISGGGQTK-HIGEDMDVVRKARIQTLYDKDSSVALRNSHDNPHIQEV 426
Query: 369 YDEWLEQPGSEKAKKHVHTEY 389
Y E+ +P S+ A+ +HT Y
Sbjct: 427 YKEFYGKPLSDLAEALLHTSY 447
>gi|359414272|ref|ZP_09206737.1| hydrogenase, Fe-only [Clostridium sp. DL-VIII]
gi|357173156|gb|EHJ01331.1| hydrogenase, Fe-only [Clostridium sp. DL-VIII]
Length = 566
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 183/378 (48%), Gaps = 37/378 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N + V+ ++P R +L E FG+ V K+ ++ +G I+DTS S DLT+IE
Sbjct: 219 NPKQRVVAQVAPAVRVALGEEFGMKFGKNVMGKIVAAMRRVGFDDIYDTSLSADLTVIEE 278
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
EF+ + E ++ LP+ +S CP W+ Y E + +LPY+SS KSP Q G
Sbjct: 279 SKEFLEKL--------EIGDNKLPLFTSCCPAWVRYVETK-HPELLPYVSSCKSPMQMFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+ IK + +K E V VMPC KK EA+R++F+ I +VD
Sbjct: 330 SVIKEYFKEKDVEEGKETISVAVMPCTAKKAEASRDEFIRN-------------GIQDVD 376
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E+ +I+ + F+ +E LD + G ++GV +GG E V R+
Sbjct: 377 YVITTTELSAMIKEIGIKFDEMEAESLDAPFSLYSGAGAIFGV---TGGVTEAVIRNVVS 433
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
+ +EF +R + +V G L+ + G N++ ++ KV + +
Sbjct: 434 DKTSSALN-EIEFIGVRGMEGIKVCELSVGDKNLRIGIASGLNNVETLIEKVGSGEEKFD 492
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDE 371
F+EVMACP GC+ G GQ P ++ I+ +Y + + +NP+V+SLY
Sbjct: 493 FIEVMACPGGCICGAGQ----PFILGEDKIQRARGLYKVDKVAQIKRSEENPIVKSLYKG 548
Query: 372 WLEQPGSEKAKKHVHTEY 389
L E++K+ +H Y
Sbjct: 549 LLR----ERSKELLHVHY 562
>gi|346224251|ref|ZP_08845393.1| hydrogenase, Fe-only [Anaerophaga thermohalophila DSM 12881]
Length = 590
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 196/381 (51%), Gaps = 30/381 (7%)
Query: 14 INKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
++ K V++ +P RA+L E FG+ P V K+ LK LG +FDT + DLT++E
Sbjct: 224 VDPNKTVVVQTAPAVRAALGESFGMEPGTLVTGKMVAALKKLGFDYVFDTDFAADLTIME 283
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI-LPYISSVKSPQQT 131
EF+ R + D + LP+L+S CPGW+ + E Q I +P S+ KSPQQ
Sbjct: 284 EGTEFLDRLTRHLNGD---KSVKLPILTSCCPGWVKFFEHQFPEMIDIP--STAKSPQQM 338
Query: 132 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 191
GA K + +KL + +++ V+VMPC KK E RE+F D+ +
Sbjct: 339 FGAIAKSYFAKKLDKKREDLVVVSVMPCLAKKYECTREEFSVNGDA-------------D 385
Query: 192 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHA 251
V+ +TT E+ LI+ ++F +L + D+ L G ++G ++GG E R A
Sbjct: 386 VNVSITTRELAQLIRNANIDFASLTDEEFDQPLGESTGAGVIFG---TTGGVIEAAVRTA 442
Query: 252 AKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
+ GK +E +EF +R + R+ ++ +G L + +G N + ++ +K K
Sbjct: 443 YELHTGKHLE-KVEFNELRGMEGSRKATVDFDGMKL-NIGIAHGLGNARKLLEDIKSGKS 500
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSL 368
D+ +E+MACP GC+ GGGQ P + L K IY E+ + +NP ++ L
Sbjct: 501 DFHAIEIMACPGGCIGGGGQ--PYHHGNVDILKKRQRAIYEEDAGKPIRKSHENPFIQEL 558
Query: 369 YDEWLEQPGSEKAKKHVHTEY 389
Y E+L +P S+ + + +HT Y
Sbjct: 559 YKEFLGEPLSDLSHELLHTHY 579
>gi|110801841|ref|YP_698262.1| periplasmic [Fe] hydrogenase 1 [Clostridium perfringens SM101]
gi|110682342|gb|ABG85712.1| [Fe] hydrogenase [Clostridium perfringens SM101]
Length = 696
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 123/381 (32%), Positives = 196/381 (51%), Gaps = 26/381 (6%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K K VI+S SP R SL E F + + K+ L+ LG K + DT+ + D+T++E
Sbjct: 88 DKDKIVIVSTSPAVRVSLGEEFNMDDGSFVQGKMIALLRKLGFKYVLDTNFAADMTIVEE 147
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+E + R ++N LP +S CP WI YAE IL +IS+ KSP G
Sbjct: 148 ASELVERIT--------KNNKPLPQFTSCCPAWIKYAE-TFHPEILDHISTSKSPIGMQG 198
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE-IPEV 192
TIK + + +G P +I +V + PC KK E RE ++++ Y G+E + ++
Sbjct: 199 PTIKTYFAKNMGIDPSKIINVALTPCTAKKFEIKRE----EMNASGRYY---GIEDMRDM 251
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D V+TT EV + K ++F +LE+S DK++ G ++ ++GG E R A
Sbjct: 252 DYVITTREVAIWAKEKGIDFNSLEDSNFDKLMGEASGAGVIFA---NTGGVMEAALRTAY 308
Query: 253 KTLFGKVI-EGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
K + K + + + +R D RE + ++ + A+ YG +N + K+K
Sbjct: 309 KYITKKEPPKDFYDLEAVRGMEDIREASFKI-NDLDINVAVIYGTENASKFISKMKDSDK 367
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLADPFKNPLVRSL 368
Y FVEVM CP GC+ GGGQ K K Q K K ++ +Y + + L +N +++L
Sbjct: 368 KYHFVEVMTCPGGCIGGGGQPKDKNLQGDKLREKRIDGLYRRDSSMKLKVSCENEEIKNL 427
Query: 369 YDEWLEQPGSEKAKKHVHTEY 389
Y E+ +P S+ A+K +HT Y
Sbjct: 428 YKEFYGKPLSDLAEKMLHTTY 448
>gi|410099619|ref|ZP_11294588.1| hydrogenase, Fe-only [Parabacteroides goldsteinii CL02T12C30]
gi|409217986|gb|EKN10959.1| hydrogenase, Fe-only [Parabacteroides goldsteinii CL02T12C30]
Length = 596
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/379 (32%), Positives = 187/379 (49%), Gaps = 28/379 (7%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N K VI +P R +L FG P V K+ + L+ LG +FDT + DLT++E
Sbjct: 225 NPAKIVIAQTAPAVRTALGRDFGCEPGTLVTGKMVSALRQLGFDYVFDTDFAADLTIMEE 284
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
E + R + D+E +PM++S CPGW+ + E+ + +S+ KSPQQ G
Sbjct: 285 GTELLQRLSKYLSGDEE---VKIPMMTSCCPGWVSFVEQHFPE-LRDNLSTAKSPQQMFG 340
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + +KLG +I V++MPC KK EA+R +F + + P+VD
Sbjct: 341 AIAKSYFAEKLGVDRKDIVVVSIMPCLAKKYEASRPEFAVEGN-------------PDVD 387
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+ T E+ LI+ +NF L +S D L G ++G ++GG E R A +
Sbjct: 388 ISIYTRELARLIRYANINFNELPDSDFDHPLGESTGAGVIFG---TTGGVIEAACRTAYE 444
Query: 254 TLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K +E +EFK +R + R + +G +K + +G N + +V +VK K Y
Sbjct: 445 LYTKKPLE-RIEFKELRGLEGIRSGTINFDG-VPVKIGIAHGLGNARKLVEEVKSGKSPY 502
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYD 370
+E+MACP GC+ GGGQ P L K +Y E+ L +NP ++ LY
Sbjct: 503 HVIEIMACPGGCIGGGGQ--PFHQGRMDVLRKRAAALYSEDESKPLRKSHENPYIQQLYK 560
Query: 371 EWLEQPGSEKAKKHVHTEY 389
E+L +P KA + +HT Y
Sbjct: 561 EYLGEPCGPKAHELLHTHY 579
>gi|70993576|ref|XP_751635.1| iron-sulfur cluster assembly associated protein Nar1 [Aspergillus
fumigatus Af293]
gi|74671683|sp|Q4WQ87.1|NAR1_ASPFU RecName: Full=Cytosolic Fe-S cluster assembly factor nar1; AltName:
Full=Nuclear architecture-related protein 1
gi|259511264|sp|B0Y4F9.1|NAR1_ASPFC RecName: Full=Cytosolic Fe-S cluster assembly factor nar1; AltName:
Full=Nuclear architecture-related protein 1
gi|66849269|gb|EAL89597.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Aspergillus fumigatus Af293]
gi|159125441|gb|EDP50558.1| iron-sulfur cluster assembly associated protein Nar1, putative
[Aspergillus fumigatus A1163]
Length = 597
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 175/376 (46%), Gaps = 70/376 (18%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-----------GVKSIFDTS 63
+ G+ + S+SPQ RASLA +GI+ + + FL G + DT+
Sbjct: 113 SDGRIFVASVSPQVRASLAATYGITEREAKYMIDQFLMGPHGLRAGGKHGNGFTWVVDTN 172
Query: 64 CSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYIS 123
R+ L +E + + +S P+LSSACPGWICYAEK +ILP++S
Sbjct: 173 VMREAVLALTADEVTSSLLSTGSGSLPKS----PILSSACPGWICYAEKT-HPFILPHLS 227
Query: 124 SVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYR 183
+KSPQ G +K + + LG P +I+H+ +MPC+DKKLEA+RE+ + +
Sbjct: 228 RLKSPQALSGTFLKSVLSKALGVPPSQIWHLAIMPCFDKKLEASREELT-DIAWASTFTQ 286
Query: 184 DEGLEIPEVDSVLTTGEVLDLIQLK-------------AVNFEALEESPLDKMLTNVDDE 230
+ + +VD V+TT E+L L + A + L+ L +
Sbjct: 287 SQTTPVRDVDCVITTRELLTLATARGLSLPNLPLKPLPASCLTPFPDQALESFLFSKSSS 346
Query: 231 GHLYGVAGSSGGYAETVFR-HAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEG-KTLLK 288
G +G+SGGY V + A+ K++ + RN+D E L G + L +
Sbjct: 347 GQTV-ESGTSGGYLHHVLQIFQARNPGSKIVT-----QRGRNADVVEYVLMSSGDEPLFR 400
Query: 289 FALCYGFQNLQNIVRKVKMRK--------------------------------CDYQFVE 316
A YGF+N+QN+VRK+K + DY +VE
Sbjct: 401 AARYYGFRNIQNLVRKLKPARVSRLPGAKPQAVSSSANRRQPMSRNAAPAGTGADYAYVE 460
Query: 317 VMACPSGCLNGGGQIK 332
VMACP GC NGGGQI+
Sbjct: 461 VMACPGGCTNGGGQIR 476
>gi|336428255|ref|ZP_08608239.1| hypothetical protein HMPREF0994_04245 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336006491|gb|EGN36525.1| hypothetical protein HMPREF0994_04245 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 571
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 194/390 (49%), Gaps = 40/390 (10%)
Query: 4 KQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFD 61
K +D+ ++ + K V++ ++P R +L E FG+ P + ++ T ++ LG +++D
Sbjct: 207 KTDMDKVWRSLYDPSKRVVVQVAPAVRVALGEAFGLQPGEDSIGRIFTAIRMLGFDAVYD 266
Query: 62 TSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPY 121
T DLT++E E + ES D+R P+ +S CP WI +AE + ILPY
Sbjct: 267 TCVGADLTIMEEAKELAEKL----ESGDDR----FPLFTSCCPAWIRFAETRHPD-ILPY 317
Query: 122 ISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEET 181
IS+ KSP + GA +K + +K V +MPC KK+EA RE+F
Sbjct: 318 ISTCKSPMEMFGAVLKEYYKEKDAEEEKSTISVAIMPCVAKKMEAVREEF---------- 367
Query: 182 YRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSG 241
RD IP+VD V+TT E++ +I+ + F+ ++ D + G ++GV +G
Sbjct: 368 KRD---GIPDVDYVITTKELIRMIRESGIQFDEIDPEAPDMPFSISSGAGVIFGV---TG 421
Query: 242 GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQN 300
G E R + + + ++F IR + +E LE+ G+T L+ + G N +
Sbjct: 422 GVTEAALRRLVQEKSTQALR-DIKFSGIRGMEGVKEALLELNGRT-LRIGVVSGLGNADD 479
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
++ K+K + + FVEVMACP GC+ G GQ P + + ++ +Y + A P
Sbjct: 480 LIEKIKSGEEHFDFVEVMACPYGCIAGAGQ----PFCHKVDKKERIDGMYRSD--KAAPI 533
Query: 361 K----NPLVRSLYDEWLEQPGSEKAKKHVH 386
K NP++ +LY+ G E HVH
Sbjct: 534 KRSEENPVIYTLYNNGGLLEGREHELLHVH 563
>gi|357634717|ref|ZP_09132595.1| hydrogenase, Fe-only [Desulfovibrio sp. FW1012B]
gi|357583271|gb|EHJ48604.1| hydrogenase, Fe-only [Desulfovibrio sp. FW1012B]
Length = 585
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 192/380 (50%), Gaps = 31/380 (8%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N K VI+ +P RA+L E GI+P V K+ L+ LG IFDT + DLT++E
Sbjct: 226 NPDKVVIVQTAPAVRAALGEDLGIAPGTSVTGKMAAALRRLGFDHIFDTDFAADLTIMEE 285
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EF+ R + D + LP+L+S CPGW+ + E Q +L S+ KSPQQ G
Sbjct: 286 GSEFLDRLTRHLNGD---QTAKLPILTSCCPGWVKFFEHQFPD-MLDVPSTAKSPQQMFG 341
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + LG D++ V+VMPC KK E AR +F + P+VD
Sbjct: 342 AIAKTYYADLLGIPRDKLVVVSVMPCLAKKYERARPEFAVDGN-------------PDVD 388
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V++T E+ LI+L ++F L + D L ++GV +GG E R A +
Sbjct: 389 VVISTRELARLIKLMNIDFAGLPDEDFDAPLGASTGAAPIFGV---TGGVIEAALRTAYE 445
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
G+ +E +EF+++R + + A+ G L + +G N + ++ +V+ + +
Sbjct: 446 LATGETLE-KVEFESVRGMEGVKRAVVKVGPHELVIGVAHGLGNARKLLERVREGE-TFH 503
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK----NPLVRSLY 369
+EVMACP GC+ GGGQ EL+K L T L + P + NP + LY
Sbjct: 504 AIEVMACPGGCIGGGGQ---PYHHGDVELLK-LRTQVLYDEDAGKPLRKSHQNPYIIELY 559
Query: 370 DEWLEQPGSEKAKKHVHTEY 389
+++L +P SEK+ +HT Y
Sbjct: 560 EKFLGKPLSEKSHHLLHTHY 579
>gi|389843333|ref|YP_006345413.1| hydrogenase, Fe-only [Mesotoga prima MesG1.Ag.4.2]
gi|387858079|gb|AFK06170.1| hydrogenase, Fe-only [Mesotoga prima MesG1.Ag.4.2]
Length = 586
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 125/401 (31%), Positives = 206/401 (51%), Gaps = 36/401 (8%)
Query: 1 MLEKQSLDEFLSNINKGKAVIIS-LSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
+ E+ E ++ + K V+I+ +P R +L+E FG P V K+ L+ LG
Sbjct: 204 ITERMEFREVVAELRKHDKVLIAQTAPSVRVALSEEFGELPGTVSTGKMVAALRKLGFDY 263
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ + DLT++E +E + R K+ PM +S CPGW+ EK +
Sbjct: 264 VFDTNFTADLTIMEEGSELLERVKE---------GGKFPMFTSCCPGWVNMMEKLYPEFT 314
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+S+ KSPQ+ + A +K + +K+G RP++IY V++MPC KK E R+ +
Sbjct: 315 -ENLSTAKSPQEMMSALVKTYFAEKIGKRPEDIYLVSIMPCTAKKDEKGRDTLTVRGTRS 373
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
D+VL T E+ LI++ + FE+LEE D L ++ G
Sbjct: 374 -------------TDAVLVTRELGKLIKMHKIPFESLEEEEFDSPLGISTGAAVIF---G 417
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
++GG E R A + G+ + L+F R D +E ++++G T ++ A+ +G N
Sbjct: 418 ATGGVMEAALRTAYELHTGEELP-RLDFDFARGFDGVKEAEIDMKG-TKVRVAVVHGGSN 475
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVM 355
+ ++ K++ + Y FVEVMACP GC+ GGGQ PK Q P L K +E IY ++ +
Sbjct: 476 VVKLMDKIRSGEAFYHFVEVMACPGGCIGGGGQ--PKSSQ-PGYLQKRMEAIYNIDKSSV 532
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSI 396
+ +NP + LY+E+L +P + + +HT Y KS+
Sbjct: 533 IRKSHENPAIAKLYEEYLGKPLGHLSHELLHTHYKDNKKSV 573
>gi|374579235|ref|ZP_09652329.1| hydrogenase, Fe-only [Desulfosporosinus youngiae DSM 17734]
gi|374415317|gb|EHQ87752.1| hydrogenase, Fe-only [Desulfosporosinus youngiae DSM 17734]
Length = 580
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 198/398 (49%), Gaps = 38/398 (9%)
Query: 1 MLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
+ E +D+ +N + V++ +P R +L E F + P + K+ L+ LG
Sbjct: 210 LTELDQVDKVWKALNDPNQFVVVQTAPAVRVALGEEFDLEPGTIVTGKMVAALRRLGFDR 269
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E E + R K LP+L+S CP W+ + E Q +
Sbjct: 270 VFDTDFAADLTIMEEATELVHRIKH---------GGRLPLLTSCCPAWVKFFEHQFPD-L 319
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ KSP + +G IK + + LG P I V+VMPC KK EAAR +
Sbjct: 320 LDIPSTCKSPHEMLGVLIKSYYARTLGIDPKTITVVSVMPCVAKKYEAARPEL------- 372
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+G E +VD V+TT E+ +I+ +++F+ L++ D L ++G
Sbjct: 373 -----SQGAETADVDIVITTRELARMIREASIHFDHLKDQEFDHPLGESTGASVIFG--- 424
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
++GG E R A + + G+ +E +EF+ +R D +E + + G+ + A+ +G N
Sbjct: 425 ATGGVLEAALRTAYEVITGETLE-KVEFEALRGMDGLKEAVIPIAGQDY-RAAVIHGLGN 482
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLA 357
+ ++ K++ + +Y +E+MACP GC+ GGGQ P + L +Y E+ A
Sbjct: 483 ARKVLEKIQAGESNYDVIEIMACPGGCIGGGGQ--PYHHGNLDILADRAGALYRED--RA 538
Query: 358 DPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
P + NP + LY ++L +P E+A K +HT Y P
Sbjct: 539 KPLRKSHENPAIIGLYKDYLGEPYGERAHKLLHTSYVP 576
>gi|258513528|ref|YP_003189750.1| hydrogenase, Fe-only [Desulfotomaculum acetoxidans DSM 771]
gi|257777233|gb|ACV61127.1| hydrogenase, Fe-only [Desulfotomaculum acetoxidans DSM 771]
Length = 573
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 129/395 (32%), Positives = 206/395 (52%), Gaps = 39/395 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKS 58
++EK + E S + + K V++ +P +R S+ E FG+ P V K+ L+ LG
Sbjct: 206 IVEKNQVQEVWSALADPAKHVVVQTAPATRISVGEIFGLEPGSLVTGKMVAALRRLGFDK 265
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E +E I R +LP+++S PGWI + E +
Sbjct: 266 VFDTDFTADLTIMEEGSELIRRLN---------GKGALPLITSCSPGWIKFIEHHYPD-L 315
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
LP++S+ KSPQQ GA K + +K G P I+ V++MPC KK EA R +
Sbjct: 316 LPHLSTCKSPQQMFGALAKTYYAEKAGLDPGSIFVVSIMPCTAKKYEAGRPEM------N 369
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
Y+D VD VLTT E+ +++ ++F AL E D+ L G ++ G
Sbjct: 370 SSGYQD-------VDVVLTTRELGKMLKEAGIDFTALPEENYDQPLGISTGAGVIF---G 419
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
++GG E R + + G+ + +EFK +R + +E A++++G T+L A+ +G N
Sbjct: 420 ATGGVMEAALRTGYELVTGETL-ASIEFKDVRGMEGVKEAAIDLKG-TILNVAVAHGLGN 477
Query: 298 LQNIVRKVKMRKCD-YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENV 354
+ ++ K+ R D Y F+E+M CP GC+ GGGQ P P L K IY +++
Sbjct: 478 ARELLEKI--RNGDIYHFIEIMCCPGGCIGGGGQ--PIPTDQETRL-KRAAGIYSTDQSM 532
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP V+SLY E+L +P K+ + +HT Y
Sbjct: 533 PLRKSHENPAVQSLYKEFLGEPLGHKSHQLLHTVY 567
>gi|42527101|ref|NP_972199.1| Fe-hydrogenase [Treponema denticola ATCC 35405]
gi|449102574|ref|ZP_21739322.1| hydrogenase, Fe-only [Treponema denticola AL-2]
gi|449111837|ref|ZP_21748406.1| hydrogenase, Fe-only [Treponema denticola ATCC 33521]
gi|449113356|ref|ZP_21749861.1| hydrogenase, Fe-only [Treponema denticola ATCC 35404]
gi|41817525|gb|AAS12110.1| Fe-hydrogenase [Treponema denticola ATCC 35405]
gi|448957108|gb|EMB37861.1| hydrogenase, Fe-only [Treponema denticola ATCC 33521]
gi|448959566|gb|EMB40285.1| hydrogenase, Fe-only [Treponema denticola ATCC 35404]
gi|448966163|gb|EMB46821.1| hydrogenase, Fe-only [Treponema denticola AL-2]
Length = 596
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 201/398 (50%), Gaps = 37/398 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKS 58
+ E+ ++F + N K V++ ++P R + EH G+ K+ LK +G
Sbjct: 203 LRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGADY 262
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT++E EFI R+ + + D PM +S CPGW+ + + Q ++
Sbjct: 263 VFDTAFSADLTIMEEAYEFIERFSKGELKDK-------PMFTSCCPGWVRFIKSQY-PHL 314
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+ ++SS KSP Q GA +K + +K+G +P++I+ V +MPC KK E E F +
Sbjct: 315 VSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGH 374
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
++D VLTT E + +++ + E L+E+ DK+ + G ++ G
Sbjct: 375 ------------DMDCVLTTREFVRMLKSAHILPETLKETEPDKLFHDASGAGIIF---G 419
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTL----LKFALCYG 294
++GG E R A + GK FK +R+S E + TL L+ A+ G
Sbjct: 420 ATGGVMEAALRTAYYAIMGKNCPPD-AFKVVRHSSQEESGIIEASFTLKENNLRIAVTSG 478
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYL-- 351
N + ++ ++ + Y FVE+MACP GC+ GGGQ P EL +K +Y
Sbjct: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQ----PIHESGELAVKRGSNLYFID 534
Query: 352 ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+N + +N +++LY+++ E+P S KA +HT++
Sbjct: 535 KNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
>gi|118579914|ref|YP_901164.1| hydrogenase, Fe-only [Pelobacter propionicus DSM 2379]
gi|118502624|gb|ABK99106.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Pelobacter propionicus DSM 2379]
Length = 601
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 182/379 (48%), Gaps = 35/379 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K + +++P R ++ E FG+ V ++ LK LG ++D S + DLT IE
Sbjct: 223 DKQTYTVAAIAPAVRVAIGEIFGMEAGAVSTGQMLAALKLLGFDQVYDVSFAADLTTIEE 282
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EF+ R + LP +S CP W+ Y E +++ +S+ KSP Q G
Sbjct: 283 GSEFLER---------RSAGVRLPHFTSCCPAWVKYVE-HFHPHLIGNLSTCKSPLQMFG 332
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A +K + + + + V++ PC KK EA R +F IP++D
Sbjct: 333 ALLKDRLPDLVQIPRERVKVVSITPCTAKKFEAKRPEFTHD-------------GIPDID 379
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E+ +I+ + F L D G ++G +SGG E V R +
Sbjct: 380 HVITTIELGRMIKAAGIQFNDLSPESFDMPFGFSTSAGVIFG---NSGGVTEAVLRFTME 436
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
L K + L+F +R S RE + ++ G T+ +FA+ +G +N + ++ K+ KC Y
Sbjct: 437 KLSNKPL-AKLDFVEVRGESGIREASFDIGGSTI-RFAIVHGLKNAKMLITKIAAGKCAY 494
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYD 370
FVEVMACP GC+NGGGQ P + ++T ++ M L P N +V Y
Sbjct: 495 DFVEVMACPQGCINGGGQ--PVNHVYNYKQLRT-RGLFTAGKMFHLHKPQDNIMVNECYQ 551
Query: 371 EWLEQPGSEKAKKHVHTEY 389
++L G KA++ +HT Y
Sbjct: 552 QYLGDVGGAKAQQLLHTHY 570
>gi|392579144|gb|EIW72271.1| hypothetical protein TREMEDRAFT_72706 [Tremella mesenterica DSM
1558]
Length = 701
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 164/309 (53%), Gaps = 40/309 (12%)
Query: 18 KAVIISLSPQSRASLAEHFG-------ISPLQVFKKLTTFL--KSLGVKSIFDTSCSRDL 68
+ ++S+SPQ+ ASL+ +G I L + +++ T L K G ++DT+ +R +
Sbjct: 143 RTPVLSISPQTLASLSAAYGAKHNREPIPLLVLLRRIRTLLDLKKHGGWKVWDTTFARHV 202
Query: 69 TLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSP 128
+L E+ EF R + ++ + SLPML+SACPGW+CYAEK G +LP +S+ +S
Sbjct: 203 SLKESIQEFEERSENAKGKG--VAKPSLPMLASACPGWVCYAEKAQGD-MLPLLSATRSS 259
Query: 129 QQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE 188
Q +GA +K QK+ P +IYHVT MPCYDKKLEA+R DF S RD
Sbjct: 260 QGVMGALVKQWWGQKMSLEPSQIYHVTAMPCYDKKLEASRSDFY----SSVHNTRD---- 311
Query: 189 IPEVDSVLTTGEVLDLIQLKAVNFEALE--------ESPLDKMLTNVDDEGHLYGVAGSS 240
VD VLTTGE LDL+ L+ + F+ E SPL + T L GSS
Sbjct: 312 ---VDCVLTTGE-LDLL-LQELGFDPYEPVPNDHLPSSPLSTISTAQLPWPELLNHPGSS 366
Query: 241 G-GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFR-EVALE--VEGKTLLKFALCYGFQ 296
Y T+ H + L + +R SD E LE V G + K A CYGF+
Sbjct: 367 SDSYLSTIISHISNIHPNPT---QLTVRKVRESDDNTEYFLEDTVTGDVIFKGARCYGFR 423
Query: 297 NLQNIVRKV 305
NLQN+VR+V
Sbjct: 424 NLQNLVRRV 432
>gi|209880018|ref|XP_002141449.1| nuclear prelamin A recognition factor-like protein [Cryptosporidium
muris RN66]
gi|209557055|gb|EEA07100.1| nuclear prelamin A recognition factor-like protein, putative
[Cryptosporidium muris RN66]
Length = 584
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/419 (28%), Positives = 190/419 (45%), Gaps = 109/419 (26%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
+L+ + +EFL N+ K I+S+ QS A+ A I P++ +L K LG K +
Sbjct: 93 LLQHHNTNEFLKNVKLKKLTIVSICNQSCAAFASLLNIHPVEAMMRLCGLFKYLGAKYVI 152
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
+++ S ++L+EA EFI RYK + ++P++ S CPGW+CYAEK L ++P
Sbjct: 153 NSTLSEFVSLLEAKEEFIFRYKY-------KDGQNIPVIVSHCPGWVCYAEKTLDPSVIP 205
Query: 121 YISSVKSPQQTIGATIKHHIC--------------------------QKLGF-RPDEIYH 153
+S V+S QQ G +K+ C ++ F E+YH
Sbjct: 206 MLSRVRSSQQIQGVLVKNLTCFAHNSKVLLYKWKQIWSYSMKIKQIAEQFDFVEQHELYH 265
Query: 154 VTVMPCYDKKLEAAREDF-VFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF 212
V + PCYDKKLE+ R ++S +I EVD+VL T E+ DLI K+ F
Sbjct: 266 VCIAPCYDKKLESVRSYLPTSTINS----------DILEVDTVLATVEIQDLI--KSSGF 313
Query: 213 EALEESP-------------LDKMLTNVDDEGHLYGVA---------------------- 237
+L + P + M ++V + +
Sbjct: 314 NSLLDIPKRDLDNLWLDLDFIINMNSSVGQNNEISDLTIENSADLKCIQATCSDIINGKR 373
Query: 238 -----------GSSGGYAETVFRHAAKTLFGKVI--EGHLEFKTIRNSDFREVALEVEGK 284
SGGY E +FR + LF I + LE+ T NS ++ +++ +
Sbjct: 374 NNTWLLPSYYNSGSGGYCEYIFRSSVMELFNVEIPKDTTLEY-THDNSGILQICFKIKNE 432
Query: 285 TLLKFALCYGFQNLQNIVRKVKMRKCD-------------YQFVEVMACPSGCLNGGGQ 330
LKF + GF+ +Q +V+K+ +R+ + + ++E+MACPSGC +GGGQ
Sbjct: 433 VKLKFGIVNGFRAIQGVVKKLDIRRKEDSTEVPQKSAKDTFHYLEIMACPSGCTSGGGQ 491
>gi|320353705|ref|YP_004195044.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Desulfobulbus propionicus DSM 2032]
gi|320122207|gb|ADW17753.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Desulfobulbus propionicus DSM 2032]
Length = 683
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 115/375 (30%), Positives = 189/375 (50%), Gaps = 34/375 (9%)
Query: 20 VIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
V+ ++P R ++ E FG+ L ++ +K +G ++DTS + DLT++E EF+
Sbjct: 228 VVAQIAPAVRVAIGEQFGLEYGLNTTGQVVAAMKRMGFNIVYDTSFTADLTVVEEAGEFM 287
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
AR +++ ER LP+ +S CPGW+ +AE Q +L +SS +SPQQ +G+ +KH
Sbjct: 288 AR-----KTNGER----LPLFTSCCPGWVKFAE-QYFPQLLGNLSSCRSPQQMMGSMVKH 337
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ +LG ++ V++MPC KK EA R +F + G P+VD VLTT
Sbjct: 338 TLPAQLGRERKDVVMVSIMPCTAKKFEAKRPEF-----------KTGG--SPDVDFVLTT 384
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ +I+ ++ L + D + G ++ G+SGG E V R+A + G+
Sbjct: 385 QELARMIEESGLSLNKLNPASFDMPMGFKTGAGVIF---GNSGGVTEAVLRYAVGKITGQ 441
Query: 259 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
EF+ IR + R + EV G LK A+ +G + ++ ++ VEV
Sbjct: 442 N-PVDPEFEEIRGEESLRVIRTEV-GGLELKLAIVHGLGKAREVMHQILDGSLIVDLVEV 499
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQ 375
MACP GC+ G GQ P + E +Y + + L +N V Y ++L +
Sbjct: 500 MACPGGCIGGAGQ--PVGRDIAERRRARTEWLYNTDRLLDLHCSQENHFVNECYQKYLGE 557
Query: 376 PGSEKAKKHVHTEYH 390
PGS ++ + +HT YH
Sbjct: 558 PGSRESHRLLHTHYH 572
>gi|449120015|ref|ZP_21756402.1| hydrogenase, Fe-only [Treponema denticola H1-T]
gi|449122412|ref|ZP_21758752.1| hydrogenase, Fe-only [Treponema denticola MYR-T]
gi|448948168|gb|EMB29006.1| hydrogenase, Fe-only [Treponema denticola MYR-T]
gi|448948635|gb|EMB29469.1| hydrogenase, Fe-only [Treponema denticola H1-T]
Length = 596
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 201/398 (50%), Gaps = 37/398 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKS 58
+ E+ ++F + N K V++ ++P R + EH G+ K+ LK +G
Sbjct: 203 LRERDDTEKFWRAVANPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGADY 262
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT++E EFI R+ + + D PM +S CPGW+ + + Q ++
Sbjct: 263 VFDTAFSADLTIMEEAYEFIERFSKGELKDK-------PMFTSCCPGWVRFIKSQY-PHL 314
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+ ++SS KSP Q GA +K + +K+G +P++I+ V +MPC KK E E F +
Sbjct: 315 VSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGH 374
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
++D VLTT E + +I+ + + L+E+ DK+ + G ++ G
Sbjct: 375 ------------DMDCVLTTREFVRMIKSAHILPQTLKETEPDKLFHDASGAGIIF---G 419
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTL----LKFALCYG 294
++GG E R A + GK FK +R+S E + TL L+ A+ G
Sbjct: 420 ATGGVMEAALRTAYYAIMGKNCPPD-AFKVVRHSSQEESGIIEASFTLKENNLRIAVTSG 478
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYL-- 351
N + ++ ++ + Y FVE+MACP GC+ GGGQ P EL +K +Y
Sbjct: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQ----PIHESGELAVKRGSNLYFID 534
Query: 352 ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+N + +N +++LY+++ E+P S KA +HT++
Sbjct: 535 KNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
>gi|302876890|ref|YP_003845523.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B]
gi|307687576|ref|ZP_07630022.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B]
gi|302579747|gb|ADL53759.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B]
Length = 574
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 179/378 (47%), Gaps = 34/378 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI++++P R +L E F + + V K+ T LK LG IFD + D+T++E E
Sbjct: 223 KHVIVAMAPSVRTALGELFKMGYGVDVTGKIYTALKELGFNRIFDINFGADMTIMEEATE 282
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
I R +N PM +S CPGW+ AE +L +SS KSPQQ GA
Sbjct: 283 LIQRIN---------NNGPFPMFTSCCPGWVRQAENYYPE-LLSNLSSAKSPQQIFGAAT 332
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + P +I+ VT+MPC KK EA R + ++GL +D+V+
Sbjct: 333 KSYYPSISDIDPSKIFTVTIMPCTAKKYEADRPEM-----------ENDGLR--NIDAVI 379
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +++ +NF LE+ D + G ++G ++GG E R AK
Sbjct: 380 TTRELAKMVKDAKINFATLEDGECDLAMGEYTGAGTIFG---ATGGVMEAALR-TAKDFV 435
Query: 257 GKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
K +E++ +R + +E +E+ G + A+ G N+ ++ + + Y F+
Sbjct: 436 EKADLHDIEYEAVRGLNGIKEATVEI-GGSEYNVAVINGSVNVFEFIKSGALDRKQYHFI 494
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRSLYDE 371
EVMACP GC+NGGGQ I+ + L +N+ +N ++ +YD
Sbjct: 495 EVMACPGGCVNGGGQPHVPVADRMDMDIRLVRASVLYNQDKNLPKRKSHENEALKRMYDS 554
Query: 372 WLEQPGSEKAKKHVHTEY 389
+ PG A K +H +Y
Sbjct: 555 YYGTPGEGLAHKLLHVKY 572
>gi|167768515|ref|ZP_02440568.1| hypothetical protein CLOSS21_03074 [Clostridium sp. SS2/1]
gi|167710039|gb|EDS20618.1| hydrogenase, Fe-only [Clostridium sp. SS2/1]
gi|291560482|emb|CBL39282.1| hydrogenases, Fe-only [butyrate-producing bacterium SSC/2]
Length = 570
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 201/398 (50%), Gaps = 41/398 (10%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKS 58
+ E+ D+ + +K V+ ++P RA+ E G+S + +K+ L+ +GV
Sbjct: 203 LRERDDTDKLYRALEDKDTIVVAQIAPAVRAAWGESLGLSREEATVEKIVDALRRIGVDY 262
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL---PMLSSACPGWICYAEKQLG 115
+FDT+ S DLT++E EF+ R+ +N L PM +S CPGW+ + + Q
Sbjct: 263 VFDTTFSADLTIMEEGTEFVERF----------TNGDLDMYPMFTSCCPGWVRFIKSQY- 311
Query: 116 SYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL 175
++ +SS KSPQ+ GA +K +K+ PD I+ +++MPC KK E RE +F
Sbjct: 312 PQMVNRLSSAKSPQEMFGAVMKTAFAKKMNIDPDRIFALSIMPCVAKKDE--REKPLFHG 369
Query: 176 DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG 235
+ + G VD VLTT E+ LI+ ++ + L+++ D T G ++G
Sbjct: 370 E-----FAGHG-----VDCVLTTRELDRLIRADHIDPKTLKDAAFDTPFTEGTGAGVIFG 419
Query: 236 VAGSSGGYAETVFRHAAKTLFGKV--IEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
++GG E R A + GK ++ + + + + + E E+ G T+ A+
Sbjct: 420 ---ATGGVMEAALRSAYYLITGKNPEVDAFKQIRGVNKNGWTEAQFEIAGNTI-NIAVVS 475
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL-ETIYL- 351
G QN +N++ ++ R+ Y FVEVMACP GC+ GGGQ P KEL +Y
Sbjct: 476 GLQNTRNLMEAIQKREVHYHFVEVMACPGGCVGGGGQ----PIHEGKELASDRGSNLYFL 531
Query: 352 -ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 388
+ L +NP ++ LYDE+ PGS KA + +H +
Sbjct: 532 DKTAHLRFSHENPDIKHLYDEYFGSPGSHKAHQLLHVQ 569
>gi|160880195|ref|YP_001559163.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
gi|160428861|gb|ABX42424.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
Length = 644
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 199/375 (53%), Gaps = 26/375 (6%)
Query: 18 KAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI ++P R ++ E FG + V KK+ L+ LGV +FDT+ + DLT++E NE
Sbjct: 287 KIVITQMAPSVRVAIGEAFGFETGANVEKKIAAGLRKLGVDYVFDTTWAADLTIMEEANE 346
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
R K+ E D E LP+L+S CP W+ + E+ G +L S+ KSP Q A
Sbjct: 347 LAERVKRYLEGDKE---VKLPILTSCCPAWVKFIEQNYGD-MLDVPSTSKSPMQMFAAVA 402
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K ++ G ++I V +MPC KK EA+R +F L+ +VD V+
Sbjct: 403 KDLWGKEKGLSREQITSVAIMPCIAKKYEASRPEFSRGLNY-------------DVDYVI 449
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E++D+ + ++ LE+ +D+++ G ++G +GG E R A + +
Sbjct: 450 TTTELIDIFKKSNIDLSQLEDEEIDQVMGEYTGAGIIFG---RTGGVIEAATRTAVELIT 506
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G+ ++ ++EF ++R D FR L V G L+ + YG + + ++ K++ + Y +
Sbjct: 507 GQRVD-NIEFTSLRGFDGFRSCELTV-GDLTLRIGVTYGLKEARKMLDKIRSGEEFYHAI 564
Query: 316 EVMACPSGCLNGGGQIKPKPG-QSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLE 374
E+MAC GC+ GGGQ + K ++ K ++ L I ++ L NP V ++Y+++L+
Sbjct: 565 EIMACTGGCIGGGGQPRAKKREETIKSRMEGLNEID-RSLPLRRSNDNPAVLAIYEKFLD 623
Query: 375 QPGSEKAKKHVHTEY 389
P S KA++ +HT Y
Sbjct: 624 YPLSNKAQELLHTRY 638
>gi|254976913|ref|ZP_05273385.1| hydrogenase [Clostridium difficile QCD-66c26]
gi|255094299|ref|ZP_05323777.1| hydrogenase [Clostridium difficile CIP 107932]
gi|255102481|ref|ZP_05331458.1| hydrogenase [Clostridium difficile QCD-63q42]
gi|255308386|ref|ZP_05352557.1| hydrogenase [Clostridium difficile ATCC 43255]
gi|255316053|ref|ZP_05357636.1| hydrogenase [Clostridium difficile QCD-76w55]
gi|255518710|ref|ZP_05386386.1| hydrogenase [Clostridium difficile QCD-97b34]
gi|255651832|ref|ZP_05398734.1| hydrogenase [Clostridium difficile QCD-37x79]
gi|255657272|ref|ZP_05402681.1| hydrogenase [Clostridium difficile QCD-23m63]
gi|260684858|ref|YP_003216143.1| hydrogenase [Clostridium difficile CD196]
gi|260688516|ref|YP_003219650.1| hydrogenase [Clostridium difficile R20291]
gi|296451875|ref|ZP_06893593.1| ferredoxin hydrogenase [Clostridium difficile NAP08]
gi|296879729|ref|ZP_06903704.1| ferredoxin hydrogenase [Clostridium difficile NAP07]
gi|306521619|ref|ZP_07407966.1| hydrogenase [Clostridium difficile QCD-32g58]
gi|384362527|ref|YP_006200379.1| hydrogenase [Clostridium difficile BI1]
gi|423090386|ref|ZP_17078687.1| hydrogenase, Fe-only [Clostridium difficile 70-100-2010]
gi|260211021|emb|CBA66340.1| hydrogenase [Clostridium difficile CD196]
gi|260214533|emb|CBE07055.1| hydrogenase [Clostridium difficile R20291]
gi|296259292|gb|EFH06169.1| ferredoxin hydrogenase [Clostridium difficile NAP08]
gi|296429318|gb|EFH15190.1| ferredoxin hydrogenase [Clostridium difficile NAP07]
gi|357556606|gb|EHJ38196.1| hydrogenase, Fe-only [Clostridium difficile 70-100-2010]
Length = 458
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 191/383 (49%), Gaps = 51/383 (13%)
Query: 21 IISLSPQSRASLAEHFG--ISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
++ +P R +L E FG + L K+ L++L ++DT+ + DLT++E +E I
Sbjct: 105 MVQCAPAVRVALGEDFGYYLGYLGA-GKMAAALRALNFDRVYDTNFAADLTIMEEGSELI 163
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R + +LPM +S CP W+ + EK + ++SS KSPQQ GA K
Sbjct: 164 KRVTEG---------GTLPMFTSCCPAWVKFMEKNY-PKLTNHLSSCKSPQQMGGAIFKT 213
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ + +I+ V++MPC KK E RE ++DS YRD VD VLTT
Sbjct: 214 YGAEINNVDASKIFSVSIMPCTCKKYECDRE----EMDSS--GYRD-------VDVVLTT 260
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ LI+ ++F+ L E D L + G ++GV +GG E R + + G+
Sbjct: 261 RELAYLIKDMGIDFKNLREEKFDSPLGSYSGAGTIFGV---TGGVMEAAIRTGYELITGE 317
Query: 259 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
I +E K +R + FR+ +++ G L+ + G +N+ ++ ++ K D F+EV
Sbjct: 318 SIP-DVEVKQVRGENGFRKSTIKI-GDLDLRVGVVSGLKNVIPVLEDLEKGKLDVDFIEV 375
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN-----------VMLADPFKNPLVR 366
M CP GC++GGGQ PK L++ + + EN + + +NP ++
Sbjct: 376 MTCPVGCVSGGGQ--------PKILLEEYKELAYENRTKATYVHDEHLAIRKSHENPDIK 427
Query: 367 SLYDEWLEQPGSEKAKKHVHTEY 389
LYDE+L +P EK+ +HT Y
Sbjct: 428 KLYDEYLVEPLGEKSHHLLHTTY 450
>gi|134301119|ref|YP_001114615.1| hydrogenase [Desulfotomaculum reducens MI-1]
gi|134053819|gb|ABO51790.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Desulfotomaculum reducens MI-1]
Length = 594
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 180/376 (47%), Gaps = 34/376 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI+ +P R +L E FG+ V K+ T LK +G +FDT DLT++E +E
Sbjct: 243 KHVIVQTAPAVRVALGELFGMEAGTVVTGKMVTALKRMGFDEVFDTDFGADLTIMEEASE 302
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI-LPYISSVKSPQQTIGAT 135
I R K +N +LP+L++ CP W+ + E Q I +P S+ KSP G
Sbjct: 303 LIYRLK---------NNKTLPILTNCCPAWVKFIEHQFPELIHVP--STCKSPHIMFGTI 351
Query: 136 IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSV 195
K + +K G PD I V+VMPC KK EA R + + VD V
Sbjct: 352 AKTYYAEKNGLDPDNIVVVSVMPCIAKKAEAKRPELTKDAHNN-------------VDIV 398
Query: 196 LTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
+TT E+ +I+ + F L +S D L ++G AG G E R A++ +
Sbjct: 399 ITTRELGAMIKEAGIEFVKLPDSEFDSPLGESTGASVIFGTAG---GVIEAALRTASEWM 455
Query: 256 FGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
GK ++ +EF+ +R + A G LK + G N ++I+ ++ + DY +
Sbjct: 456 TGKPLD-RVEFEELRGMEGVRRATVKIGDQELKIGIASGLGNARHILEDIRDGRADYHAI 514
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWL 373
E+MACP GC+ GGGQ P + + + K E IY E+ + +N + LY +L
Sbjct: 515 EIMACPGGCIAGGGQ--PYHHGNHEIIKKRREAIYEEDRRKKVRKSHENKEILELYKNYL 572
Query: 374 EQPGSEKAKKHVHTEY 389
+P + A + +HT +
Sbjct: 573 GEPFGKLAHELLHTHF 588
>gi|317498714|ref|ZP_07957005.1| iron only hydrogenase large subunit domain-containing protein
[Lachnospiraceae bacterium 5_1_63FAA]
gi|316894008|gb|EFV16199.1| iron only hydrogenase large subunit domain-containing protein
[Lachnospiraceae bacterium 5_1_63FAA]
Length = 570
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 201/398 (50%), Gaps = 41/398 (10%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKS 58
+ E+ D+ + +K V+ ++P RA+ E G+S + +K+ L+ +GV
Sbjct: 203 LRERDDTDKLYRALEDKDTIVVAQIAPAVRAAWGESLGLSREEATVEKIVDALRRIGVDY 262
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL---PMLSSACPGWICYAEKQLG 115
+FDT+ S DLT++E EF+ R+ +N L PM +S CPGW+ + + Q
Sbjct: 263 VFDTTFSADLTIMEEGTEFVERF----------TNGDLDMYPMFTSCCPGWVRFIKSQY- 311
Query: 116 SYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL 175
++ +SS KSPQ+ GA +K +K+ PD I+ +++MPC KK E RE +F
Sbjct: 312 PQMVNRLSSAKSPQEMFGAVMKTAFAKKMNIDPDRIFALSIMPCVAKKDE--REKTLFHG 369
Query: 176 DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG 235
+ + G VD VLTT E+ LI+ ++ + L+++ D T G ++G
Sbjct: 370 E-----FAGHG-----VDCVLTTRELDRLIRADHIDPKTLKDAAFDTPFTEGTGAGVIFG 419
Query: 236 VAGSSGGYAETVFRHAAKTLFGKV--IEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
++GG E R A + GK ++ + + + + + E E+ G T+ A+
Sbjct: 420 ---ATGGVMEAALRSAYYLITGKNPEVDAFKQIRGVNKNGWTEAQFEIAGNTI-DIAVVS 475
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL-ETIYL- 351
G QN +N++ ++ R+ Y FVEVMACP GC+ GGGQ P KEL +Y
Sbjct: 476 GLQNTRNLMEAIQKREVHYHFVEVMACPGGCVGGGGQ----PIYEGKELASDRGSNLYFL 531
Query: 352 -ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 388
+ L +NP ++ LYDE+ PGS KA + +H +
Sbjct: 532 DKTAHLRFSHENPDIKHLYDEYFGSPGSHKAHQLLHVQ 569
>gi|429762837|ref|ZP_19295210.1| putative ferredoxin hydrogenase [Anaerostipes hadrus DSM 3319]
gi|429180698|gb|EKY21907.1| putative ferredoxin hydrogenase [Anaerostipes hadrus DSM 3319]
Length = 570
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 201/398 (50%), Gaps = 41/398 (10%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKS 58
+ E+ D+ + +K V+ ++P RA+ E G+S + +K+ L+ +GV
Sbjct: 203 LRERDDTDKLYRALEDKDTIVVAQIAPAVRAAWGESLGLSREEATVEKIVDALRRIGVDY 262
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSL---PMLSSACPGWICYAEKQLG 115
+FDT+ S DLT++E EF+ R+ +N L PM +S CPGW+ + + Q
Sbjct: 263 VFDTTFSADLTIMEEGTEFVERF----------TNGDLDMYPMFTSCCPGWVRFIKSQY- 311
Query: 116 SYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL 175
++ +SS KSPQ+ GA +K +K+ PD I+ +++MPC KK E RE +F
Sbjct: 312 PQMVNRLSSAKSPQEMFGAVMKTAFAKKMNIDPDRIFALSIMPCVAKKDE--REKPLFHG 369
Query: 176 DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG 235
+ + G VD VLTT E+ LI+ ++ + L+++ D T G ++G
Sbjct: 370 E-----FAGHG-----VDCVLTTRELDRLIRADHIDPKTLKDAAFDTPFTEGTGAGVIFG 419
Query: 236 VAGSSGGYAETVFRHAAKTLFGKV--IEGHLEFKTIRNSDFREVALEVEGKTLLKFALCY 293
++GG E R A + GK ++ + + + + + E E+ G T+ A+
Sbjct: 420 ---ATGGVMEAALRSAYYLITGKNPEVDAFKQIRGVNKNGWTEAKFEIAGNTI-DIAVVS 475
Query: 294 GFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL-ETIYL- 351
G QN +N++ ++ R+ Y FVEVMACP GC+ GGGQ P KEL +Y
Sbjct: 476 GLQNTRNLMEAIQKREVHYHFVEVMACPGGCVGGGGQ----PIHEGKELASDRGSNLYFL 531
Query: 352 -ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 388
+ L +NP ++ LYDE+ PGS KA + +H +
Sbjct: 532 DKTAHLRFSHENPDIKHLYDEYFGSPGSHKAHQLLHVQ 569
>gi|404372751|ref|ZP_10978035.1| iron hydrogenase 1 [Clostridium sp. 7_2_43FAA]
gi|226914125|gb|EEH99326.1| iron hydrogenase 1 [Clostridium sp. 7_2_43FAA]
Length = 575
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 113/395 (28%), Positives = 190/395 (48%), Gaps = 36/395 (9%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIF 60
EK +D + ++ K VI++++P R ++ E F + + V K+ T L+ LG IF
Sbjct: 207 EKSHMDRVKDALADQEKHVIVAMAPSVRTAMGELFKMGYGVDVTGKVYTALRELGFDKIF 266
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
D + D+T++E E I R K + PM +S CP W+ E ++I
Sbjct: 267 DINFGADMTIMEEATELIQRIK---------TGGPFPMFTSCCPAWVRQVENYYPNFI-E 316
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
++SS KSPQQ G K + Q P ++ VT+MPC KK EA R +
Sbjct: 317 HLSSAKSPQQIFGTASKTYYPQVADVDPKNVFTVTIMPCTAKKYEADRPEM--------- 367
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
E I +D+V+TT E+ +I+ ++F LE+S D + G ++G ++
Sbjct: 368 ----ENNGIRNIDAVITTRELAKMIKDAKIDFAKLEDSEADPAMGEYTGAGAIFG---AT 420
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQ 299
GG E R A + GK +E ++E++ +R + +E +E+ G A+ G +L
Sbjct: 421 GGVMEAALRTAKDFVEGKDLE-NIEYEQVRGLAGIKEATVEIGGDNY-NVAVINGASSLF 478
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN-----V 354
++ K+ + Y F+EVMACP GC+NGGGQ I+++ L N +
Sbjct: 479 EFMKSGKVNEKKYHFIEVMACPGGCVNGGGQPHVNASDRLTMDIRSVRASVLYNQDKNVL 538
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+N + +Y+ ++ +PG KA + +H +Y
Sbjct: 539 KKRKSHENGALNKMYETFMGEPGHGKAHELLHIKY 573
>gi|422345529|ref|ZP_16426443.1| hydrogenase, Fe-only [Clostridium perfringens WAL-14572]
gi|373228254|gb|EHP50564.1| hydrogenase, Fe-only [Clostridium perfringens WAL-14572]
Length = 696
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 121/395 (30%), Positives = 199/395 (50%), Gaps = 36/395 (9%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K VI+S SP R SL E F ++ + K+ L+ LG + DT+ + D+T++E
Sbjct: 89 KDKIVIVSTSPAVRVSLGEEFNMNNGSFVQGKMIALLRKLGFDYVLDTNFAADMTIVEEA 148
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
+E + R ++N LP +S CP W+ YAE IL +IS+ KSP G
Sbjct: 149 SELVERIT--------KNNKHLPQFTSCCPAWVKYAE-TFHPEILEHISTSKSPIGMQGP 199
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE-IPEVD 193
TIK + +K+G P +I +V + PC KK E RE ++++ Y G+E + ++D
Sbjct: 200 TIKTYFAKKMGIDPSKIVNVALTPCTAKKFEIKRE----EMNASGRYY---GIEDMRDMD 252
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT EV + K ++F +LE+S DK++ G ++ ++GG E R A K
Sbjct: 253 YVITTREVAIWAKEKGIDFNSLEDSNFDKLMGEASGAGVIFA---NTGGVMEAALRTAYK 309
Query: 254 TLFGKV-------IEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVK 306
+ + +E + +R + F+ LE+ A+ YG +N + K+K
Sbjct: 310 YITKEDPPKDFYDLESVRGMEGVREASFKINDLEI------NIAVIYGTENASKFISKMK 363
Query: 307 MRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLADPFKNPL 364
Y F+EVM CP GC+ GGGQ K K + K K ++ +Y + + L ++N
Sbjct: 364 NEDKKYHFIEVMTCPGGCIGGGGQPKDKKFEGDKLREKRIDGLYKRDSSMKLRVSYENEE 423
Query: 365 VRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 399
++ LY+E+ E+P S A++ +HT Y K + +
Sbjct: 424 IKKLYEEFYEKPLSNLAEEMLHTNYFDRSKDLGGE 458
>gi|405122167|gb|AFR96934.1| iron hydrogenase [Cryptococcus neoformans var. grubii H99]
Length = 650
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 117/318 (36%), Positives = 169/318 (53%), Gaps = 52/318 (16%)
Query: 12 SNINKGKAVIISLSPQSRASLAEHFGIS------PLQVF-KKLTTFLKSL--GVKSIFDT 62
S +K + I+S+SPQ+ ASL+ + + PL V +++ TFL G ++DT
Sbjct: 119 SPCHKPRLPILSISPQTLASLSAAYATASSRHPIPLLVLLRRIRTFLSQPENGSWRVWDT 178
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
+ +R ++L E+ EF R + ++ + +PML+SACPGW+CYAEK G +LP +
Sbjct: 179 TFARHMSLRESVMEFHERKDEKEKG----KAAEMPMLASACPGWVCYAEKAQGD-MLPLL 233
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
S+ +S Q IGA K KL ++PDEIYHVT MPCYDKKLEA+R DF L S
Sbjct: 234 SAARSSQGIIGALAKSWYGPKLQYKPDEIYHVTAMPCYDKKLEASRSDFYSSLYSTR--- 290
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVN------------FEALEESPLDKMLTNVDDE 230
+VD VLTTGE+ L+Q N + A E+ P ++LT+ E
Sbjct: 291 --------DVDCVLTTGELDLLLQELGFNPHVPVANESTPSYSATEDYPFPELLTH---E 339
Query: 231 GHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALE--VEGKTLL 287
G SSG Y +T+ ++ + + IR S D E ++ V G+ +
Sbjct: 340 G------SSSGSYLQTIIHDVQRSHPNPT---RITTREIRGSTDNIEYLIQDTVTGQVIF 390
Query: 288 KFALCYGFQNLQNIVRKV 305
K A YGF+NLQN+VRKV
Sbjct: 391 KGAKVYGFRNLQNLVRKV 408
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 314 FVEVMACPSGCLNGGGQIKPK-PGQSPKELIKTLETIY 350
FVEVMACP GC+NGGGQ+KP P S E ++ E Y
Sbjct: 474 FVEVMACPGGCVNGGGQMKPTVPTLSAPEAMEVDEEGY 511
>gi|358063560|ref|ZP_09150169.1| hypothetical protein HMPREF9473_02232 [Clostridium hathewayi
WAL-18680]
gi|356698186|gb|EHI59737.1| hypothetical protein HMPREF9473_02232 [Clostridium hathewayi
WAL-18680]
Length = 458
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 126/383 (32%), Positives = 193/383 (50%), Gaps = 30/383 (7%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K VI S SP R +L E F + P V K+ L++LG + DT+ S DLT++E
Sbjct: 88 DKDSIVIFSTSPSVRVALGESFEMEPGSFVQDKMVALLRALGADYVLDTNFSADLTIMEE 147
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
NE I R + N +P L+S CP W+ + E + +S+ KSP G
Sbjct: 148 ANELIRRIQSD--------NIPIPQLTSCCPAWVKFVETFYPEF-KENLSTSKSPIGMQG 198
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP--- 190
TIK + +K G P I +V V PC KK E RE+ D+ +E L IP
Sbjct: 199 PTIKTYFAKKQGLDPRRIVNVAVTPCTAKKFEIRREEMC---DAGKE------LGIPGMR 249
Query: 191 EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH 250
++D V+TT E+ + + + ++F L+ D ++ G ++G ++GG E R
Sbjct: 250 DMDYVITTRELAEWAKSRGIDFTGLKPERYDSLMGEASGAGVIFG---NTGGVMEAAVRT 306
Query: 251 AAKTLFGK-VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMR 308
A L G+ V E L+ + +R + RE +L + G L A+ YG N + ++ K+K
Sbjct: 307 AYAVLTGEPVPENLLKLEAVRGMEGIREASLTING-IKLDIAVVYGTANARILLDKIKAG 365
Query: 309 KCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVR 366
+ YQF+EVM CP GC+ GGGQ K + K + +Y E++ L +NP +
Sbjct: 366 EKFYQFIEVMTCPGGCIGGGGQPKNILADGDEIRRKRISGLYRKDESMKLRLSHENPEIT 425
Query: 367 SLYDEWLEQPGSEKAKKHVHTEY 389
+YDE+ E GSEKA++ +HT Y
Sbjct: 426 QVYDEFYETSGSEKAERMLHTAY 448
>gi|440785157|ref|ZP_20962107.1| hydrogenase-1 [Clostridium pasteurianum DSM 525]
gi|440218529|gb|ELP57749.1| hydrogenase-1 [Clostridium pasteurianum DSM 525]
Length = 505
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 117/394 (29%), Positives = 186/394 (47%), Gaps = 35/394 (8%)
Query: 3 EKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIF 60
EK +D + +N K VI++++P RAS+ E F + + V K+ T L+ LG IF
Sbjct: 138 EKSHMDRVKNALNAPEKHVIVAMAPSVRASIGELFNMGFGVDVTGKIYTALRQLGFDKIF 197
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
D + D+T++E E + R + +N PM +S CPGW+ AE +L
Sbjct: 198 DINFGADMTIMEEATELVQRIE---------NNGPFPMFTSCCPGWVRQAENYYPE-LLN 247
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+SS KSPQQ G K + G P ++ VTVMPC KK EA R +++
Sbjct: 248 NLSSAKSPQQIFGTASKTYYPSISGLDPKNVFTVTVMPCTSKKFEADRPQM------EKD 301
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
RD +D+V+TT E+ +I+ + F LE+S D + G ++G ++
Sbjct: 302 GLRD-------IDAVITTRELAKMIKDAKIPFAKLEDSEADPAMGEYSGAGAIFG---AT 351
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQ 299
GG E R A +E +E+K +R + +E +E+ A+ G NL
Sbjct: 352 GGVMEAALRSAKDFAENAELE-DIEYKQVRGLNGIKEAEVEINNNKY-NVAVINGASNLF 409
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVM 355
++ + + Y F+EVMAC GC+NGGGQ P K IK + L E++
Sbjct: 410 KFMKSGMINEKQYHFIEVMACHGGCVNGGGQPHVNPKDLEKVDIKKVRASVLYNQDEHLS 469
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+N + +Y + +PG +A + +H +Y
Sbjct: 470 KRKSHENTALVKMYQNYFGKPGEGRAHEILHFKY 503
>gi|386391238|ref|ZP_10076019.1| hydrogenase, Fe-only [Desulfovibrio sp. U5L]
gi|385732116|gb|EIG52314.1| hydrogenase, Fe-only [Desulfovibrio sp. U5L]
Length = 585
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 128/395 (32%), Positives = 198/395 (50%), Gaps = 32/395 (8%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
++E E L + N K VI+ +P RA+L E GI+P V K+ L+ LG
Sbjct: 211 LVEHDHTREVLDALANPDKVVIVQTAPAVRAALGEDLGIAPGTSVTGKMAAALRRLGFDH 270
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
IFDT + DLT++E +EF+ R + D + LP+L+S CPGW+ + E Q +
Sbjct: 271 IFDTDFAADLTIMEEGSEFLDRLTRHLNGD---QTAKLPILTSCCPGWVKFFEHQFPD-M 326
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ KSPQQ GA K + LG D++ V+VMPC KK E AR + F +D
Sbjct: 327 LDVPSTAKSPQQMFGAIAKTYYADLLGIPRDKLVVVSVMPCLAKKYERARPE--FSVDGN 384
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
P+VD V++T E+ LI+L ++F L + D L ++GV
Sbjct: 385 -----------PDVDVVISTRELARLIKLMNIDFAGLPDEDFDAPLGASTGAAPIFGV-- 431
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNL 298
+GG E R A + G+ +E +EF+ +R + + A+ G L + +G N
Sbjct: 432 -TGGVIEAALRTAYELATGETLE-KVEFENVRGMEGVKRAVVKVGPHELVIGVAHGLGNA 489
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD 358
+ ++ +V+ + + +EVMACP GC+ GGGQ EL+K L T L +
Sbjct: 490 RKLLERVRAGEV-FHAIEVMACPGGCIGGGGQ---PYHHGDVELLK-LRTQVLYDEDAGK 544
Query: 359 PFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
P + NP + LY+++L +P SE++ +HT Y
Sbjct: 545 PLRKSHQNPYIIELYEKFLGKPLSERSHHLLHTHY 579
>gi|423082808|ref|ZP_17071393.1| hydrogenase, Fe-only [Clostridium difficile 002-P50-2011]
gi|423085921|ref|ZP_17074356.1| hydrogenase, Fe-only [Clostridium difficile 050-P50-2011]
gi|357547336|gb|EHJ29224.1| hydrogenase, Fe-only [Clostridium difficile 002-P50-2011]
gi|357548312|gb|EHJ30178.1| hydrogenase, Fe-only [Clostridium difficile 050-P50-2011]
Length = 458
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 191/383 (49%), Gaps = 51/383 (13%)
Query: 21 IISLSPQSRASLAEHFG--ISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
++ +P R +L E FG + L K+ L++L ++DT+ + DLT++E +E I
Sbjct: 105 MVQCAPAVRVALGEDFGYYLGYLGA-GKMAAALRALNFDRVYDTNFAADLTIMEEGSELI 163
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R + +LPM +S CP W+ + EK + ++SS KSPQQ GA K
Sbjct: 164 KRVTEG---------GTLPMFTSCCPAWVKFMEKNY-PKLTNHLSSCKSPQQMGGAIFKT 213
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ + +I+ V++MPC KK E RE ++DS YRD VD VLTT
Sbjct: 214 YGAEINNVDASKIFSVSIMPCTCKKYECDRE----EMDSS--GYRD-------VDVVLTT 260
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ LI+ ++F+ L E D L + G ++GV +GG E R + + G+
Sbjct: 261 RELAYLIKDMGIDFKNLREEKFDSPLGSYSGAGTIFGV---TGGVMEAAIRTGYELITGE 317
Query: 259 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
I +E K +R + FR+ +++ G L+ + G +N+ ++ ++ K D F+EV
Sbjct: 318 SIP-DVEVKQVRGENGFRKSTIKI-GDLDLRVGVVSGLKNVIPVLEDLEKGKLDVDFIEV 375
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN-----------VMLADPFKNPLVR 366
M CP GC++GGGQ PK L++ + + EN + + +NP ++
Sbjct: 376 MTCPVGCVSGGGQ--------PKILLEEYKELAYENRTKATYVHDEHLAIRKSHENPDIK 427
Query: 367 SLYDEWLEQPGSEKAKKHVHTEY 389
LYDE+L +P EK+ +HT Y
Sbjct: 428 KLYDEYLVEPLGEKSHHLLHTTY 450
>gi|346316112|ref|ZP_08857618.1| hypothetical protein HMPREF9022_03275 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345903295|gb|EGX73060.1| hypothetical protein HMPREF9022_03275 [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 622
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 118/380 (31%), Positives = 189/380 (49%), Gaps = 25/380 (6%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+ K VI SP R SL E FG+ P V +++ L++LG +FDT+ + DLT++E
Sbjct: 88 DSSKTVIAITSPSVRVSLGEEFGMQPGSYVEEQMVGSLRALGFDYVFDTTFAADLTIMEE 147
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+E I R + Q LP +S CP W+ +AE +LP IS+ KSP
Sbjct: 148 ASELIERIQTKQ---------PLPQFTSCCPAWVKFAETYYPE-LLPNISTSKSPISMFA 197
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
TIK +K D+IY V + PC KKLE RE+ S Y D + D
Sbjct: 198 PTIKTWFAEKESLDADDIYVVAITPCTAKKLEIMREEL-----SDAANYLDRK-PAQDCD 251
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E+ ++ ++ E++EES D ++ G ++G ++GG E R A
Sbjct: 252 RVVTTRELASWMRACNLDLESVEESDYDSLMPRGSGAGIIFG---NTGGVMEAAIRSAYY 308
Query: 254 TLFGKVI-EGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
L K E L+ + +R + + A + LK A+ +G N + + +K +
Sbjct: 309 FLTKKQPQEDLLQLQAVRGLEGVKTAELTIQELPLKVAVVHGTDNARKFLHHIKESGEHF 368
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT-LETIYLEN--VMLADPFKNPLVRSLY 369
FVEVM CP GC++GGGQ K G+ + K ++++Y ++ + L + NP ++ +Y
Sbjct: 369 DFVEVMTCPGGCISGGGQTK-HIGEDMDTVRKARIQSLYDKDSTITLRNSHDNPHIQQVY 427
Query: 370 DEWLEQPGSEKAKKHVHTEY 389
+E+ +P S+ A+ +HT Y
Sbjct: 428 EEFYGKPLSDLAEALLHTNY 447
>gi|126700933|ref|YP_001089830.1| Iron hydrogenase [Clostridium difficile 630]
gi|115252370|emb|CAJ70211.1| Iron hydrogenase [Clostridium difficile 630]
Length = 461
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 191/383 (49%), Gaps = 51/383 (13%)
Query: 21 IISLSPQSRASLAEHFG--ISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
++ +P R +L E FG + L K+ L++L ++DT+ + DLT++E +E I
Sbjct: 108 MVQCAPAVRVALGEDFGYYLGYLGA-GKMAAALRALNFDRVYDTNFAADLTIMEEGSELI 166
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R + +LPM +S CP W+ + EK + ++SS KSPQQ GA K
Sbjct: 167 KRVTEG---------GTLPMFTSCCPAWVKFMEKNY-PKLTNHLSSCKSPQQMGGAIFKT 216
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ + +I+ V++MPC KK E RE ++DS YRD VD VLTT
Sbjct: 217 YGAEINNVDASKIFSVSIMPCTCKKYECDRE----EMDSS--GYRD-------VDVVLTT 263
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ LI+ ++F+ L E D L + G ++GV +GG E R + + G+
Sbjct: 264 RELAYLIKDMGIDFKNLREEKFDSPLGSYSGAGTIFGV---TGGVMEAAIRTGYELITGE 320
Query: 259 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
I +E K +R + FR+ +++ G L+ + G +N+ ++ ++ K D F+EV
Sbjct: 321 SIP-DVEVKQVRGENGFRKSTIKI-GDLDLRVGVVSGLKNVIPVLEDLEKGKLDVDFIEV 378
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN-----------VMLADPFKNPLVR 366
M CP GC++GGGQ PK L++ + + EN + + +NP ++
Sbjct: 379 MTCPVGCVSGGGQ--------PKILLEEYKELAYENRTKATYVHDEHLAIRKSHENPDIK 430
Query: 367 SLYDEWLEQPGSEKAKKHVHTEY 389
LYDE+L +P EK+ +HT Y
Sbjct: 431 KLYDEYLVEPLGEKSHHLLHTTY 453
>gi|296425093|ref|XP_002842078.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638335|emb|CAZ86269.1| unnamed protein product [Tuber melanosporum]
Length = 514
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 112/363 (30%), Positives = 177/363 (48%), Gaps = 52/363 (14%)
Query: 1 MLEKQSLDEFLSNINK--GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS----- 53
++ QS +E L+N+N K + +SPQS+ASLA +G+S + L S
Sbjct: 76 LVSLQSHNEVLANLNAHPKKLFVALISPQSKASLATAYGVSADVAGHMIERLLCSPEGIC 135
Query: 54 ---LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYA 110
G + DT+ +R++ + A E + + ++ + R +P+L+SACPG++CY
Sbjct: 136 REGRGFDLVLDTNATREVAVRCAAEEVVMAMQGGKDGVNGRK---MPILTSACPGFVCYL 192
Query: 111 EKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARED 170
E + I P++S +KSPQ +G +K + + + IY V VMPC+DKKLE AR +
Sbjct: 193 ESTQPALI-PHLSRLKSPQAILGTAVKSLLHKDVEDGVKGIYVVGVMPCFDKKLEGARGE 251
Query: 171 FV--FQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALE------------ 216
++ + E RD VD V+TT E++ L Q + V+F L
Sbjct: 252 LTSGAWMEREGEVVRD-------VDCVITTRELISLAQARGVDFATLPQSPPLPPPSGIA 304
Query: 217 -------ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTI 269
+ P + T + G+S GY H A + L +
Sbjct: 305 SNLLQTLKRPTESTTTKTSP------IPGTSDGY----LIHIATHILTLHPTSTLRIEPG 354
Query: 270 RNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGG 329
RNSD + + KT+ + + CYGF+N+QN+VR + +Y +VEVMACP GC NGGG
Sbjct: 355 RNSDTIDYVISTPEKTIARLSRCYGFRNIQNLVRPGVRSEAEYTYVEVMACPGGCTNGGG 414
Query: 330 QIK 332
Q++
Sbjct: 415 QVR 417
>gi|206901891|ref|YP_002250294.1| periplasmic [Fe] hydrogenase 1 [Dictyoglomus thermophilum H-6-12]
gi|206740994|gb|ACI20052.1| periplasmic [Fe] hydrogenase 1 [Dictyoglomus thermophilum H-6-12]
Length = 666
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 185/378 (48%), Gaps = 37/378 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K K VI ++P R+++ E F + S L + +L TFLK LG +F+ DL E
Sbjct: 217 SKKKVVIGMIAPAVRSAIQEEFKLDSDLFIAGRLNTFLKMLGFSKVFEVPFGADLVAYEE 276
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EF+ R ++ ++ LP +S CP W+ Y E+ +YI +S+VKSPQQ +G
Sbjct: 277 AHEFLDRLEKGEK---------LPQFTSCCPAWVKYVEEFYPTYI-DNLSTVKSPQQAMG 326
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+ IK +++G ++IY V++MPC KK EA RE+ +G+ VD
Sbjct: 327 SVIKEIYSKEIGIPKEDIYLVSIMPCTSKKFEAEREEH-------------KGV----VD 369
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E+ +I+ ++ +L+ P DK G +G G G V H K
Sbjct: 370 LVITTKELAQMIKASGIDISSLKPEPFDKPFNLYSQGGLDFGKTGGVLGTVLAVINHKVK 429
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
V E +E K IR V LE G+ + A+ + + ++R +K +
Sbjct: 430 --IKNVKEEEIE-KGIR---LFNVELE-NGRNVRAMAV-HSLGKAKRVLRDIKEGILNVD 481
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWL 373
+EVMAC GC+ GGGQ P + + K L + N + P +NP + LY+++L
Sbjct: 482 IIEVMACSFGCIGGGGQPYPNDSKVRQRRAKILSDMVNIN-PITSPQENPYLMELYEKYL 540
Query: 374 EQPGSEKAKKHVHTEYHP 391
E P S K + +HT Y P
Sbjct: 541 EHPLSHKTHEILHTSYSP 558
>gi|347542622|ref|YP_004857259.1| iron hydrogenase [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346985658|dbj|BAK81333.1| iron hydrogenase [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 578
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 112/376 (29%), Positives = 182/376 (48%), Gaps = 33/376 (8%)
Query: 20 VIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
VI +++P R SL E F + + V K+ T L+ +G IFD + DLT++E EF
Sbjct: 225 VIAAMAPSVRTSLGELFKMDYGIDVTNKIYTALRKIGFDKIFDINFGADLTIMEEATEFA 284
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
+ + + N++ PM +S CP W+ AE +L +SS KSPQQ GA K
Sbjct: 285 NKIRSN--------NTNFPMFTSCCPAWVRLAENHFPE-LLDNLSSTKSPQQIFGAASKS 335
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ P +++ VT+MPC KK EA R + + + G + +D+V+TT
Sbjct: 336 YYPSIENLDPKKVFTVTIMPCTAKKFEADRPEMI-----------NNG--VRNIDAVITT 382
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E +++ ++F +LE+ LD+ + G ++GV +GG E R A L K
Sbjct: 383 REFGRMLKELKIDFASLEDGELDEAMGLYTGAGAIFGV---TGGVMEAALRSAKDMLENK 439
Query: 259 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
++ +E+K +R + +E +E+ K A+ G N +++ + K Y F+EV
Sbjct: 440 DLD-KIEYKDVRGFEGIKEATVEINNKE-YNVAVVNGASNFFKMMKDNLLDKKQYHFIEV 497
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRSLYDEWL 373
MAC GC+NGGGQ P K K L L +N+ +NP + +Y ++
Sbjct: 498 MACYGGCINGGGQPYVTPKMRNKIDYKKLRGNVLYNQDKNLKYRKSHQNPALLKMYKTYM 557
Query: 374 EQPGSEKAKKHVHTEY 389
PG A + +H +Y
Sbjct: 558 GTPGEGLAHEILHQKY 573
>gi|333978446|ref|YP_004516391.1| hydrogenase, Fe-only [Desulfotomaculum kuznetsovii DSM 6115]
gi|333821927|gb|AEG14590.1| hydrogenase, Fe-only [Desulfotomaculum kuznetsovii DSM 6115]
Length = 608
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 123/411 (29%), Positives = 208/411 (50%), Gaps = 38/411 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
+ E++ +DE I + K V++ +P + +L E FG+ V + KL L+ LG
Sbjct: 226 LTEREYIDEVWRAIEDPDKFVVVQAAPAIQVTLGEAFGLGAGTVVRGKLAAALRRLGFDR 285
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+F T + DLT++E +E + R K + LP++SS PGW+ + E +
Sbjct: 286 VFTTELAADLTIVEEAHELLERLK---------GHGKLPLISSCSPGWVKFCEHFYPEF- 335
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L +S+ KSP + GA K + +K G P ++ V VMPC KK EAAR + V +
Sbjct: 336 LDNLSTCKSPMEMFGALAKTYYAEKEGLDPKKMVVVGVMPCTAKKFEAARPELVTR---- 391
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
GL +VD VLTT E+ +I+ + F+ L + D+ L G ++
Sbjct: 392 -------GLR--DVDYVLTTRELARMIRQAGIRFDELADEEFDQPLGLSTGAGVIF---A 439
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R A + G+ + LEF+ R +E L+++ +T L+ A+ +G +N
Sbjct: 440 ATGGVMEAAIRTAYALVEGRDLPTRLEFREFRGLRGIKEARLKLKNQT-LRLAVAHGTRN 498
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGG-----GQIKPKPGQSPKELIKTLETIYL- 351
+ ++ ++K R + F+E+MACP GC+ GG G++ + + + ++ + +Y
Sbjct: 499 ARRLLERIK-RGEKFHFIEIMACPGGCVGGGGQPILGRLNRREAKMVERRMQRAQALYKI 557
Query: 352 -ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLH 401
N L +NP V+ +Y E+L P SEKAK+ +HT Y P ++ LH
Sbjct: 558 DLNKKLRRAHENPAVQQIYREFLGHPLSEKAKEILHTRYTPRGRTNHRLLH 608
>gi|150866595|ref|XP_001386245.2| nuclear architecture related protein [Scheffersomyces stipitis CBS
6054]
gi|259511477|sp|A3LYR2.2|NAR1_PICST RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|149387851|gb|ABN68216.2| nuclear architecture related protein [Scheffersomyces stipitis CBS
6054]
Length = 545
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 132/409 (32%), Positives = 189/409 (46%), Gaps = 100/409 (24%)
Query: 5 QSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTT-FLKSLGVKSIFDTS 63
++L+E + N N K + S+S QSRASLA + +S ++ K L F+ +G K I TS
Sbjct: 99 KALNEKVDN-NSTKVFVASISHQSRASLATAYNLSIEEIDKLLINLFINQMGFKYIVGTS 157
Query: 64 CSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYIS 123
R L+LI I K+ E D P+LSS CPGW+ YAEK Y+LP +S
Sbjct: 158 IGRKLSLINEAQNLIE--KKESEFDG-------PVLSSICPGWVLYAEKT-HPYVLPRMS 207
Query: 124 SVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYR 183
+VKSPQQ G +K +LG ++IYH+++MPC+DKKLE+AR E Y
Sbjct: 208 TVKSPQQITGCLLKTLAAHELGVTRNDIYHLSIMPCFDKKLESAR----------PEKYG 257
Query: 184 DEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTN-----VDDEGHLYG--- 235
++ +VD VLT E++ L++ + F+ + P +TN VD LY
Sbjct: 258 EQNTS-NDVDCVLTAKELVTLLEQHSDKFQLI--PPQAHTITNSAIPVVD----LYSKCA 310
Query: 236 --------------VAGSSGGYAETVFRHAAKTLFGK-----VIEG-HLEFKTIRNSDFR 275
+SGGY + L K EG +++ RN+D
Sbjct: 311 PRTWPLVQYSWSNDSGSASGGYGYNYLKMYQNHLIMKHPTKYQQEGFSIDYVKGRNTDLT 370
Query: 276 EVALEVEGKTLLKFALCYGFQNLQNIVRKVK----------------------------- 306
E+ L + L A+ GF+N+QN+VRK+K
Sbjct: 371 EMRLMYGSEKLASSAIVNGFRNIQNLVRKLKPTVKPGSTTGKGNALVARRRARVAGGITK 430
Query: 307 ------------MRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI 343
KCDY VE+MACP+GC+NGGGQI P S K+ +
Sbjct: 431 ASSPAGSDESADASKCDY--VEIMACPNGCINGGGQINPPEDVSEKDWL 477
>gi|153954875|ref|YP_001395640.1| Fe-only hydrogenase 1 [Clostridium kluyveri DSM 555]
gi|219855329|ref|YP_002472451.1| hypothetical protein CKR_1986 [Clostridium kluyveri NBRC 12016]
gi|146347733|gb|EDK34269.1| Predicted Fe-only hydrogenase 1 [Clostridium kluyveri DSM 555]
gi|219569053|dbj|BAH07037.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 580
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 121/383 (31%), Positives = 181/383 (47%), Gaps = 44/383 (11%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI++++P RA++ E F + V K+ T L+ L IFD + D+T++E E
Sbjct: 221 KHVIVAMAPSVRAAIGELFNMGFGKDVTGKIYTALRMLNFDKIFDINFGADMTIMEEATE 280
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY---ILPYISSVKSPQQTIG 133
+ R K + PM +S CP W+ +Q +Y +L +SS KSPQQ G
Sbjct: 281 LLERIK---------NGGPFPMFTSCCPAWV----RQAQNYYPELLENLSSAKSPQQIFG 327
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
K + G +IY VT+MPC DKK EA D G+ +D
Sbjct: 328 TATKTYYPSISGIEAKDIYTVTIMPCNDKKYEADLTDMEVN-----------GMRC--ID 374
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+VLTT E+ +I+ + F +LE+S D + G ++ G++GG E R AK
Sbjct: 375 AVLTTRELAKMIKAAKIKFTSLEDSEADAAMGEYSGAGVIF---GNTGGVMEAALR-TAK 430
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
V +E+ IR +E ++E+ G T A+ G NL + + K+ + Y
Sbjct: 431 DFAENVDLKDIEYTQIRGLKGIKESSVEISGNT-YNIAVINGAANLFDFIDSGKIGEKQY 489
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELI--KTLETIYLENVMLADP----FKNPLVR 366
F+EVMACP GC+NGGGQ P +ELI +TL L N P KN +
Sbjct: 490 HFIEVMACPGGCINGGGQ--PHLNSLNRELIDYRTLRASVLYNQDNHLPKRKSHKNTAII 547
Query: 367 SLYDEWLEQPGSEKAKKHVHTEY 389
+YD + +PG A + +H +Y
Sbjct: 548 KMYDTYFGKPGHGLAHELLHFKY 570
>gi|291533663|emb|CBL06776.1| Iron only hydrogenase large subunit, C-terminal domain [Megamonas
hypermegale ART12/1]
Length = 324
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 174/339 (51%), Gaps = 34/339 (10%)
Query: 54 LGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQ 113
+G +FDT+ DLT+ E NE I R K S +PM +S CPGW+ Y EK
Sbjct: 2 IGFDKVFDTNYGADLTITEEANELIERIK---------SGKKMPMATSCCPGWVNYMEKH 52
Query: 114 LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVF 173
+L ++S+ KSP Q A K H ++ P I+ V +MPC KK E R +
Sbjct: 53 YPD-LLDHLSTTKSPMQIFSAITKTHYAKQENLDPKNIFTVAIMPCIAKKYEITRPEMAH 111
Query: 174 QLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
D + P+ D+VLTT E++ LI+ ++FE L ES D + +
Sbjct: 112 --DGR-----------PDTDAVLTTRELIKLIKYIGIDFENLPESEFDNPMGTATGAAAI 158
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALC 292
+G ++GG E R + L G+ ++ ++E+ +R D +E + + KT+ A+
Sbjct: 159 FG---ATGGVMEAALRTTYEWLTGEEMK-NVEYTPVRGFDGIKEAQINIGDKTI-NIAVA 213
Query: 293 YGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL- 351
+ N + ++ K++ +C Y F+EVMACP GCL GGGQ G + + K +E+IY
Sbjct: 214 HTLNNAKILMDKLRAGECKYDFIEVMACPGGCLGGGGQ---PIGTTMEVNKKRMESIYQI 270
Query: 352 -ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+N +NP ++ LY ++LE+PGSE A K +HT Y
Sbjct: 271 DKNTKYRKSHENPYLKQLYKDFLEKPGSEIAHKLLHTHY 309
>gi|440785158|ref|ZP_20962108.1| Hydrogene dehydrogenase [Clostridium pasteurianum DSM 525]
gi|130069|sp|P29166.1|PHF1_CLOPA RecName: Full=Iron hydrogenase 1; AltName: Full=CpI; AltName:
Full=Fe-only hydrogenase; AltName: Full=[Fe] hydrogenase
gi|4139441|pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pasteurianum
gi|6730137|pdb|1C4A|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
gi|6730138|pdb|1C4C|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
gi|185177961|pdb|3C8Y|A Chain A, 1.39 Angstrom Crystal Structure Of Fe-Only Hydrogenase
gi|144836|gb|AAA23248.1| hydrogenase I [Clostridium pasteurianum]
gi|440218530|gb|ELP57750.1| Hydrogene dehydrogenase [Clostridium pasteurianum DSM 525]
Length = 574
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 117/394 (29%), Positives = 186/394 (47%), Gaps = 35/394 (8%)
Query: 3 EKQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIF 60
EK +D + +N K VI++++P RAS+ E F + + V K+ T L+ LG IF
Sbjct: 207 EKSHMDRVKNALNAPEKHVIVAMAPSVRASIGELFNMGFGVDVTGKIYTALRQLGFDKIF 266
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
D + D+T++E E + R + +N PM +S CPGW+ AE +L
Sbjct: 267 DINFGADMTIMEEATELVQRIE---------NNGPFPMFTSCCPGWVRQAENYYPE-LLN 316
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+SS KSPQQ G K + G P ++ VTVMPC KK EA R +++
Sbjct: 317 NLSSAKSPQQIFGTASKTYYPSISGLDPKNVFTVTVMPCTSKKFEADRPQM------EKD 370
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
RD +D+V+TT E+ +I+ + F LE+S D + G ++G ++
Sbjct: 371 GLRD-------IDAVITTRELAKMIKDAKIPFAKLEDSEADPAMGEYSGAGAIFG---AT 420
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQ 299
GG E R A +E +E+K +R + +E +E+ A+ G NL
Sbjct: 421 GGVMEAALRSAKDFAENAELE-DIEYKQVRGLNGIKEAEVEINNNKY-NVAVINGASNLF 478
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVM 355
++ + + Y F+EVMAC GC+NGGGQ P K IK + L E++
Sbjct: 479 KFMKSGMINEKQYHFIEVMACHGGCVNGGGQPHVNPKDLEKVDIKKVRASVLYNQDEHLS 538
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+N + +Y + +PG +A + +H +Y
Sbjct: 539 KRKSHENTALVKMYQNYFGKPGEGRAHEILHFKY 572
>gi|422873618|ref|ZP_16920103.1| [Fe] hydrogenase [Clostridium perfringens F262]
gi|380305436|gb|EIA17714.1| [Fe] hydrogenase [Clostridium perfringens F262]
Length = 696
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 200/396 (50%), Gaps = 36/396 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K K VI+S SP R SL E F ++ + K+ L+ LG + DT+ + D+T++E
Sbjct: 88 HKDKIVIVSTSPAVRVSLGEEFNMNNGSFVQGKMIALLRKLGFDYVLDTNFAADMTIVEE 147
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+E + R ++N LP +S CP W+ YAE IL +IS+ KSP G
Sbjct: 148 ASELVERIT--------KNNKPLPQFTSCCPAWVKYAE-TFHPEILDHISTSKSPIGMQG 198
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE-IPEV 192
TIK + +K+G P +I +V + PC KK E RE ++++ Y G+E + ++
Sbjct: 199 PTIKTYFAKKMGIDPSKIVNVALTPCTAKKFEIKRE----EMNASGRYY---GIEDMRDM 251
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D V+TT EV + K ++F +LE+S DK++ G ++ ++GG E R A
Sbjct: 252 DYVITTREVAIWAKEKGIDFNSLEDSNFDKLMGEASGAGVIFA---NTGGVMEAALRTAY 308
Query: 253 KTLFGKV-------IEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKV 305
K + + +E + +R + F+ LE+ A+ YG +N + K+
Sbjct: 309 KYITKEDPPKDFYDLESVRGMEGVREASFKINDLEI------NIAVIYGTENASKFISKM 362
Query: 306 KMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLADPFKNP 363
K Y F+EVM CP GC+ GGGQ K K + K K ++ +Y + + L ++N
Sbjct: 363 KNSDKKYHFIEVMTCPGGCIGGGGQPKDKKFEGDKLREKRIDGLYKRDSSMKLRVSYENE 422
Query: 364 LVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 399
++ LY+E+ E+P S A++ +HT Y K + +
Sbjct: 423 EIKKLYEEFYEKPLSNLAEEMLHTTYFDRSKDLGGE 458
>gi|409197406|ref|ZP_11226069.1| Fe-only hydrogenase, catalytic subunit alpha [Marinilabilia
salmonicolor JCM 21150]
Length = 596
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 125/406 (30%), Positives = 206/406 (50%), Gaps = 37/406 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
+ EK ++E + I N K V++ +P R +L E + P ++ K+ L+ LG +
Sbjct: 209 LTEKTYINEVWNAIDNSDKYVVVQTAPAVRIALGEALDMDPGEIVTGKMVAALRRLGFNA 268
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+ DT S DLT+IE NE + R K+ + D+ S+ +PM +S PGWI + E +
Sbjct: 269 VLDTDWSADLTIIEEGNELLQRLKRVLK--DKESDVKIPMTTSCSPGWIKFIEHTFPDF- 325
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L ++S+ KSPQQ GA K K+G P ++ V+VMPC KK EA R + +
Sbjct: 326 LEHLSTAKSPQQMFGALAKTFYANKIGVDPSDMVSVSVMPCTAKKFEANRPEM------R 379
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
Y+D VD V+TT E+ +++ ++F++L + D ++ G ++ G
Sbjct: 380 ASGYQD-------VDFVVTTRELAMMVKQAGIDFKSLPDDDYDSIMGESTGAGVIF---G 429
Query: 239 SSGGYAETVFRHAAKTLFGKVIE-GHLEFKTIRN-SDFREVALEVEGK---------TLL 287
++GG E R + + G+ + L +R + RE +L++E +
Sbjct: 430 ATGGVMEAALRTVYEVVTGREVPFDGLNILPVRGMEEVREASLKIENPLPEWDFLDGVEV 489
Query: 288 KFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE 347
K + +G N + ++ KVK + DY F+E+MACP GCL GGGQ P SP+ K E
Sbjct: 490 KTCVAHGLSNAKKVMEKVKNGEADYHFIEIMACPGGCLGGGGQPLP---TSPEIRKKRAE 546
Query: 348 TIYLENV--MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
IY E+ + +NP + +Y+E+L +P K+ + +HT Y P
Sbjct: 547 AIYREDAGKKIRKSHENPEIIQIYEEFLVEPLGHKSHELLHTTYTP 592
>gi|374384531|ref|ZP_09642051.1| hydrogenase, Fe-only [Odoribacter laneus YIT 12061]
gi|373228439|gb|EHP50748.1| hydrogenase, Fe-only [Odoribacter laneus YIT 12061]
Length = 585
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 117/379 (30%), Positives = 192/379 (50%), Gaps = 28/379 (7%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N K VI+ +P RA+L E FG+ + V K+ L+ LG +FDT + DLT++E
Sbjct: 226 NPRKTVIVQTAPAVRAALGEEFGLPAGTSVTGKMAAALRQLGFAKVFDTDFAADLTIMEE 285
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
E + R D N LP+L+S CP W+ + E Q +L S+ +SPQQ G
Sbjct: 286 GTELLNRLTAYLNGD---KNVRLPILTSCCPAWVNFFEHQFPD-MLDIPSTARSPQQMFG 341
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+ K + +K+G +++ V++MPC KK E R++F D P+V+
Sbjct: 342 SIAKTYWAEKMGIPREDLIVVSIMPCLAKKYECGRDEFKVNDD-------------PDVN 388
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
++T E+ LI+ ++F +L E D+ L G ++G +SGG E R A +
Sbjct: 389 YSISTRELASLIKRANIDFNSLPEEDFDQPLGESTGAGVIFG---ASGGVMEAALRTAYE 445
Query: 254 TLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
G+ +E ++F+ +R D ++ + + G L + +G N + ++ ++K K ++
Sbjct: 446 LYTGQKLE-KVDFEAVRGLDNIKKATVRLNG-VELHVGIAHGLGNARKLLNEIKEGKSEF 503
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYD 370
+E+MACP GC+ GGGQ P + + L +Y E N L +NP + LY+
Sbjct: 504 HAIEIMACPGGCIGGGGQ--PLHHGNSELLKARTHALYEEDRNKPLRKSHENPYILKLYE 561
Query: 371 EWLEQPGSEKAKKHVHTEY 389
E+L +P SEKA +HT Y
Sbjct: 562 EYLGKPMSEKAHHLLHTHY 580
>gi|110799819|ref|YP_695522.1| [Fe] hydrogenase [Clostridium perfringens ATCC 13124]
gi|110674466|gb|ABG83453.1| [Fe] hydrogenase [Clostridium perfringens ATCC 13124]
Length = 696
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 200/396 (50%), Gaps = 36/396 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K K VI+S SP R SL E F ++ + K+ L+ LG + DT+ + D+T++E
Sbjct: 88 DKDKIVIVSTSPAVRVSLGEEFNMNDGSFVQGKMIALLRKLGFDYVLDTNFAADMTIVEE 147
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+E + R ++N LP +S CP W+ YAE IL +IS+ KSP G
Sbjct: 148 ASELVERIT--------KNNKPLPQFTSCCPAWVKYAE-TFHPEILEHISTSKSPIGMQG 198
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE-IPEV 192
TIK + +K+G P +I +V + PC KK E RE ++++ Y G+E + ++
Sbjct: 199 PTIKTYFAKKMGIDPSKIVNVALTPCTAKKFEIKRE----EMNASGRYY---GIEDMRDM 251
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D V+TT EV + K ++F +LE+S DK++ G ++ ++GG E R A
Sbjct: 252 DYVITTREVAIWAKEKEIDFNSLEDSNFDKLMGEASGAGVIFA---NTGGVMEAALRTAY 308
Query: 253 KTLFGKV-------IEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKV 305
K + + +E + +R + F+ LE+ A+ YG +N + K+
Sbjct: 309 KYITKEDPPKDFYDLESVRGIEGVREASFKINDLEI------NIAVIYGTENALKFISKI 362
Query: 306 KMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLADPFKNP 363
K Y F+EVM CP GC+ GGGQ K K + K K ++ +Y + + L ++N
Sbjct: 363 KNSDKKYHFIEVMTCPGGCIGGGGQPKDKKFEGDKLREKRIDGLYKRDSSMKLRVSYENE 422
Query: 364 LVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 399
++ LY+E+ E+P S A++ +HT Y K + +
Sbjct: 423 EIKKLYEEFYEKPLSNLAEEMLHTTYFDRSKDLGGE 458
>gi|160878248|ref|YP_001557216.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
gi|160426914|gb|ABX40477.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
Length = 567
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 110/363 (30%), Positives = 177/363 (48%), Gaps = 30/363 (8%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N K V++ ++P R +L E F + + V K+ L+ LG +IFDTS DLT++E
Sbjct: 219 NPKKRVVVQVAPAVRVALGEEFHMKAGENVIGKIVAALRRLGFDAIFDTSVGADLTIMEE 278
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
E + + E + P+ +S CPGWI YAE + +LPYIS+ KSP + G
Sbjct: 279 SKELLKKL--------EAGENKYPLFTSCCPGWIRYAETK-HKELLPYISTCKSPMEMFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A IK H E V +MPC KK EA+RE+F +IP+VD
Sbjct: 330 AVIKEHFKGLDSTEGVETVSVAIMPCSAKKYEASREEFKRN-------------DIPDVD 376
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E++ +I+ + FE +E D + G ++GV +GG E R
Sbjct: 377 YVITTIELVKMIKEIGIQFEEIEPEAPDMPFSLYSGAGVIFGV---TGGVTEAAVRRVVA 433
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVA-LEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K ++ +EF +R + +V L+VE ++++ + G N + ++ K++ + +
Sbjct: 434 DKSPKALK-DIEFLGLRGMEGVKVCELQVEENSIVRIGVVSGLANAEALIEKIESGEEHF 492
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVEVMACP GC+ G GQ + + + + + + +NPL+ SLY+
Sbjct: 493 DFVEVMACPGGCIAGAGQPFSHKEEKNARALGMYKADKVSQIKRCE--ENPLMLSLYNGM 550
Query: 373 LEQ 375
L+
Sbjct: 551 LKH 553
>gi|449123663|ref|ZP_21759985.1| hydrogenase, Fe-only [Treponema denticola OTK]
gi|448943916|gb|EMB24798.1| hydrogenase, Fe-only [Treponema denticola OTK]
Length = 596
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 201/398 (50%), Gaps = 37/398 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKS 58
+ E+ ++F + + K V++ ++P R + EH G+ K+ LK +G
Sbjct: 203 LRERDDTEKFWRAVADPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGADY 262
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT++E EFI R+ + + D PM +S CPGW+ + + Q ++
Sbjct: 263 VFDTAFSADLTIMEEAYEFIERFSKGELKDK-------PMFTSCCPGWVRFIKSQY-PHL 314
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+ ++SS KSP Q GA +K + +K+G +P++I+ V +MPC KK E E F +
Sbjct: 315 VSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGH 374
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
++D VLTT E + +I+ + + L+E+ DK+ + G ++ G
Sbjct: 375 ------------DMDCVLTTREFVRMIKSAHILPQTLKETEPDKLFHDASGAGIIF---G 419
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTL----LKFALCYG 294
++GG E R A + GK FK +R+S E + TL L+ A+ G
Sbjct: 420 ATGGVMEAALRTAYYAIMGKNCPPD-AFKVVRHSSQEESGIIEASFTLKENNLRIAVTSG 478
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYL-- 351
N + ++ ++ + Y FVE+MACP GC+ GGGQ P EL +K +Y
Sbjct: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQ----PIHESGELAVKRGSNLYFLD 534
Query: 352 ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+N + +N +++LY+++ E+P S KA +HT++
Sbjct: 535 KNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
>gi|449115934|ref|ZP_21752394.1| hydrogenase, Fe-only [Treponema denticola H-22]
gi|448955420|gb|EMB36187.1| hydrogenase, Fe-only [Treponema denticola H-22]
Length = 596
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 201/398 (50%), Gaps = 37/398 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKS 58
+ E+ ++F + + K V++ ++P R + EH G+ K+ LK +G
Sbjct: 203 LRERDDTEKFWRAVADPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGADY 262
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT++E EFI R+ + + D PM +S CPGW+ + + Q ++
Sbjct: 263 VFDTAFSADLTIMEEAYEFIERFSRGELKDK-------PMFTSCCPGWVRFIKSQY-PHL 314
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+ ++SS KSP Q GA +K + +K+G +P++I+ V +MPC KK E E F +
Sbjct: 315 VSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGH 374
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
++D VLTT E + +I+ + + L+E+ DK+ + G ++ G
Sbjct: 375 ------------DMDCVLTTREFVRMIKSAHILPQTLKETEPDKLFHDASGAGIIF---G 419
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTL----LKFALCYG 294
++GG E R A + GK FK +R+S E + TL L+ A+ G
Sbjct: 420 ATGGVMEAALRTAYYAIMGKNCPPD-AFKVVRHSSQEESGIIEASFTLKENNLRIAVTSG 478
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYL-- 351
N + ++ ++ + Y FVE+MACP GC+ GGGQ P EL +K +Y
Sbjct: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQ----PIHESGELAVKRGSNLYFID 534
Query: 352 ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+N + +N +++LY+++ E+P S KA +HT++
Sbjct: 535 KNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
>gi|423345428|ref|ZP_17323117.1| hydrogenase, Fe-only [Parabacteroides merdae CL03T12C32]
gi|409223214|gb|EKN16151.1| hydrogenase, Fe-only [Parabacteroides merdae CL03T12C32]
Length = 596
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 189/376 (50%), Gaps = 28/376 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI +P R +L FG P V K+ + L+ LG +FDT + DLT++E E
Sbjct: 228 KIVIAQTAPAVRTALGRDFGYEPGTLVTGKMVSALRRLGFDYVFDTDFAADLTIMEEGTE 287
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R + + D E +P+++S CPGW+ + E+ +L +S+ KSPQQ GA
Sbjct: 288 LLQRIGKYLKGDQE---VKMPLMTSCCPGWVSFVEQHFPE-LLDNLSTAKSPQQMFGAIA 343
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +KLG I V++MPC KK EA+R +F + P+VD +
Sbjct: 344 KSYFAEKLGVDRKRIVVVSIMPCLAKKYEASRPEFAVDGN-------------PDVDISI 390
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
T E+ LI+ +NF L +S D+ L G ++ G++GG E R A + L+
Sbjct: 391 YTRELARLIRYANINFAELPDSDFDRPLGESTGAGVIF---GTTGGVIEAACRTAYE-LY 446
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
K ++F+ +R + R ++ +G T +K + +G N + +V +VK Y +
Sbjct: 447 TKKTLPKIDFEELRGLEGIRSATIDFDG-TPIKIGIAHGLGNARRLVEEVKNGMSPYHAI 505
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV--MLADPFKNPLVRSLYDEWL 373
EVMACP GC+ GGGQ P + L K +Y E+ L +NP +++LY ++L
Sbjct: 506 EVMACPGGCIGGGGQ--PFHRGRMEVLRKRAAALYQEDRSKTLRKSHENPYIQALYADYL 563
Query: 374 EQPGSEKAKKHVHTEY 389
+P +A K +HT Y
Sbjct: 564 GEPCGPRAHKLLHTHY 579
>gi|296807987|ref|XP_002844332.1| nuclear prelamin A recognition factor-like protein [Arthroderma
otae CBS 113480]
gi|238843815|gb|EEQ33477.1| nuclear prelamin A recognition factor-like protein [Arthroderma
otae CBS 113480]
Length = 610
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 110/378 (29%), Positives = 171/378 (45%), Gaps = 63/378 (16%)
Query: 17 GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCS 65
GK + S+SPQ RASLA +GIS + + L G + DT+
Sbjct: 103 GKIFVASVSPQVRASLAATYGISEKKAGYMIEQLLSGPSGLRAGGQHGSGFTWVVDTNIM 162
Query: 66 RDLTLIEACNEFIARYKQSQESDDERSNSSLPM-----LSSACPGWICYAEKQLGSYILP 120
R L + E + + + P+ L+S+CPGWICYAEK ++LP
Sbjct: 163 RQAVLELSTAEVTESLAAASSTSSRDGHGKFPIPNRPILTSSCPGWICYAEKTH-PHVLP 221
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFV-FQLDSQE 179
++S +KSPQ G +K I +KL P +I+H+ +MPC+DKKLEA+R++ ++
Sbjct: 222 HLSRLKSPQALTGTFLKTIISRKLNISPSQIWHLAIMPCFDKKLEASRQELTDVSWRNES 281
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL---------DKMLTNVDDE 230
T + G I +VD V+T+ E+L L + + +L PL D+ ++
Sbjct: 282 NTMEESGSPIRDVDCVITSKELLMLASSRNITLSSLPLEPLPAHYSTPFPDQTVSRFLSA 341
Query: 231 GHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEGKTLLKF 289
S+ G ++ H T + ++ + RN+D E L G ++K
Sbjct: 342 NAFRSTQSSAAGPSDGYLHHLLTTYQSRHPNSIIQAQRGRNADVVEYTLVSATGDPIIKA 401
Query: 290 ALCYGFQNLQNIVRKVKMRKC-----------------------------------DYQF 314
A YGF+N+QN+VRK+K + ++ +
Sbjct: 402 ARYYGFRNIQNLVRKLKPARTSRLPGSRVIQPNPNGARTRPSPLANGKAATPAPPSEFAY 461
Query: 315 VEVMACPSGCLNGGGQIK 332
VEVMACP GC NGGGQI+
Sbjct: 462 VEVMACPGGCTNGGGQIR 479
>gi|325261424|ref|ZP_08128162.1| putative [Fe] hydrogenase, large subunit HymC [Clostridium sp. D5]
gi|324032878|gb|EGB94155.1| putative [Fe] hydrogenase, large subunit HymC [Clostridium sp. D5]
Length = 593
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 190/393 (48%), Gaps = 48/393 (12%)
Query: 18 KAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ ++P RA+L E FG+ V K+ L +G +FDT S DLT++E E
Sbjct: 221 KRVVVQVAPAVRAALGEEFGLPCGTPVTGKIAAALGDIGFDDVFDTLFSADLTILEEGTE 280
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R + ++ + LPM++S PGWI + E Q L ++S+ KSP +GA +
Sbjct: 281 LLGRLNAALTGEE----AVLPMITSCSPGWIKHVEHQF-PEALGHLSTCKSPHTMMGALV 335
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K +K G RP++++ V+VMPC KK E R + ++D I +VD+VL
Sbjct: 336 KTFYAEKTGTRPEDMFVVSVMPCTAKKYEIQRPE--MEVDG-----------IRDVDAVL 382
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ ++F L + D + ++GV G V A +T++
Sbjct: 383 TTRELARMIRKSGIDFVKLPDEAFDAPMGLGTGAADIFGVTGG-------VMEAALRTVY 435
Query: 257 GKVIEGHLEFKTIRNSDF--------REVAL--------EVEGKTLLKFALCYGFQNLQN 300
V L F+ + + E+A+ ++G T +K A+ G
Sbjct: 436 EVVTGEELPFEKLHVTPIIGLEQVKTAEIAIVETLPEYAHLKGVT-VKIAVTSGLAGASK 494
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLAD 358
++++V Y F+EVM CP GC+NGGGQ P+ + +T + +Y E+ +L
Sbjct: 495 LMQEVADGTSPYHFIEVMGCPGGCINGGGQ--PRCSEEGYREKRT-QALYSEDERKVLRK 551
Query: 359 PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
+NP + LYDE+L P KA +HT Y P
Sbjct: 552 SHENPDLLKLYDEYLGDPNGHKAHHLLHTHYVP 584
>gi|422350074|ref|ZP_16430961.1| hydrogenase, Fe-only [Sutterella wadsworthensis 2_1_59BFAA]
gi|404657669|gb|EKB30553.1| hydrogenase, Fe-only [Sutterella wadsworthensis 2_1_59BFAA]
Length = 683
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 113/381 (29%), Positives = 184/381 (48%), Gaps = 30/381 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI S SP R +L + FG++ V ++ L+ LG + DT+ + DLT+ E E
Sbjct: 91 KIVIFSTSPSVRVALGDAFGMADGAFVEGQMVELLRRLGGDYVLDTNFAADLTICEEAAE 150
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
I R ++ LP +S CP W+ Y E ++P+ISS KSP G T+
Sbjct: 151 LIERITNAK--------GPLPQFTSCCPAWVRYCE-TFHPEMIPHISSAKSPIGMQGPTV 201
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +K+ P I HV V PC KK E RE ++++ D + + D V+
Sbjct: 202 KTYFAKKMNLDPKRIVHVAVTPCTAKKAEILRE----EMNAAGRLLGDPAMR--DTDYVI 255
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ D + +NF L E D+++ G ++ G++GG E R A + L
Sbjct: 256 TTVELADWAKAARINFAELPEGAFDRLMGEGSGAGVIF---GNTGGVMEAALRTAYRHLT 312
Query: 257 GKVIEGHLEFKT-IRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD--Y 312
G+ L T +R D +E + + G + A+ YG + +R++ + D Y
Sbjct: 313 GETAPAELYHLTPVRGLQDVKEATVTIAGND-INVAVIYGTASAGEFIRRLNASETDKPY 371
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVRSL 368
FVEVM+CP GC++GGGQ P + ++++ L E + +N +++L
Sbjct: 372 HFVEVMSCPGGCISGGGQ--PSAFGNKADVLREARIASLYKRDEEMDCRTSDENEEIKAL 429
Query: 369 YDEWLEQPGSEKAKKHVHTEY 389
Y ++ +P SE A++ +HT Y
Sbjct: 430 YRDFYGEPLSELAEELLHTNY 450
>gi|422342080|ref|ZP_16423020.1| Fe-hydrogenase [Treponema denticola F0402]
gi|325474148|gb|EGC77336.1| Fe-hydrogenase [Treponema denticola F0402]
Length = 596
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 201/398 (50%), Gaps = 37/398 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKS 58
+ E+ ++F + + K V++ ++P R + EH G+ K+ LK +G
Sbjct: 203 LRERDDTEKFWRAVADPDKVVVVQVAPAIRTAWGEHIGLDLKDASVNKIFDALKRIGADY 262
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT++E EFI R+ + + D PM +S CPGW+ + + Q ++
Sbjct: 263 VFDTAFSADLTIMEEAYEFIERFSKGELKDK-------PMFTSCCPGWVRFIKSQY-PHL 314
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+ ++SS KSP Q GA +K + +K+G +P++I+ V +MPC KK E E F +
Sbjct: 315 VSHLSSAKSPMQMFGAVMKSYFAEKIGKKPEDIFSVAIMPCVAKKSEIDMELFYGEYAGH 374
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
++D VLTT E + +I+ + + L+E+ DK+ + G ++ G
Sbjct: 375 ------------DMDCVLTTREFVRMIKSAHILPQTLKETEPDKLFHDASGAGIIF---G 419
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTL----LKFALCYG 294
++GG E R A + GK FK +R+S E + TL L+ A+ G
Sbjct: 420 ATGGVMEAALRTAYYAIMGKNCPPD-AFKVVRHSSQEESGIIEASFTLKENNLRIAVTSG 478
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYL-- 351
N + ++ ++ + Y FVE+MACP GC+ GGGQ P EL +K +Y
Sbjct: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQ----PIHESGELAVKRGSNLYFID 534
Query: 352 ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+N + +N +++LY+++ E+P S KA +HT++
Sbjct: 535 KNSKVRYSHENECIKALYNDFFEKPNSHKAHSLLHTDH 572
>gi|254568180|ref|XP_002491200.1| Nuclear architecture related protein [Komagataella pastoris GS115]
gi|238030997|emb|CAY68920.1| Nuclear architecture related protein [Komagataella pastoris GS115]
gi|328352276|emb|CCA38675.1| hypothetical protein PP7435_Chr2-0995 [Komagataella pastoris CBS
7435]
Length = 503
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 127/406 (31%), Positives = 190/406 (46%), Gaps = 103/406 (25%)
Query: 4 KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKSIFDT 62
K+ L+ ++ N+ K + S+S Q+RASLA F + + K L LK+ + K + T
Sbjct: 88 KELLNALETDGNR-KVFVASISHQTRASLASAFDVQIEAMDKVLIYLLKNVMKFKYVIGT 146
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
R L+ I + R S++ P+++S CPGW+ YAEK +ILP I
Sbjct: 147 ETGRRLSHIFTTLDLQNRSPHSEK----------PLINSTCPGWVLYAEKT-HPFILPRI 195
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
S++KS QQ G +K+ + + LG +IYH++VMPC+DKKLEAAR+
Sbjct: 196 STIKSTQQITGHLLKNIVSKDLGIEKSQIYHLSVMPCFDKKLEAARDS------------ 243
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEA-LEESPLDKMLTNVD------------- 228
++P+VD V+T E++ +I+ ++ + L+ES LD N D
Sbjct: 244 -----DVPDVDCVITARELVQVIEELNIDLQTILKESVLD----NTDIYSVYRSSSPPGW 294
Query: 229 ---DEGHLYGVAGSSGGYAETVF-----RHAAKTLFGKVIEGHLEFKTIRNSDFREVALE 280
++ L +SGGYA RHA + IEG RNSD E L
Sbjct: 295 YQPEQSWLNNKGSASGGYAMQYLLDVQQRHADSEII--TIEG-------RNSDIYEHRLV 345
Query: 281 V-EGKTLLKFALCYGFQNLQNIVRKVKMR------------------------------- 308
+ +G+ + A+ GF+N+QN++RK+K
Sbjct: 346 LRDGQVVASSAVVNGFRNIQNLIRKLKPNHKATGGGISARRRSRKLKEDQTGDQGQSNAV 405
Query: 309 ----KCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIY 350
KCDY VE+MACP GC+NGGGQI Q+ K+ I T Y
Sbjct: 406 VDPSKCDY--VEIMACPGGCINGGGQIAAPADQNSKDWINKATTKY 449
>gi|423722284|ref|ZP_17696460.1| hydrogenase, Fe-only [Parabacteroides merdae CL09T00C40]
gi|409242425|gb|EKN35187.1| hydrogenase, Fe-only [Parabacteroides merdae CL09T00C40]
Length = 596
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 189/376 (50%), Gaps = 28/376 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI +P R +L FG P V K+ + L+ LG +FDT + DLT++E E
Sbjct: 228 KIVIAQTAPAVRTALGRDFGYEPGTLVTGKMVSALRRLGFDYVFDTDFAADLTIMEEGTE 287
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R + + D E +P+++S CPGW+ + E+ +L +S+ KSPQQ GA
Sbjct: 288 LLQRIGKYLKGDQE---VKMPLMTSCCPGWVSFVEQHFPE-LLDNLSTAKSPQQMFGAIA 343
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +KLG I V++MPC KK EA+R +F + P+VD +
Sbjct: 344 KSYFAEKLGVDRKRIVVVSIMPCLAKKYEASRPEFAVDGN-------------PDVDISI 390
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
T E+ LI+ +NF L +S D+ L G ++ G++GG E R A + L+
Sbjct: 391 YTRELARLIRYANINFAELPDSDFDRPLGESTGAGVIF---GTTGGVIEAACRTAYE-LY 446
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
K ++F+ +R + R ++ +G T +K + +G N + +V +VK Y +
Sbjct: 447 TKKTLPKIDFEELRGLEGIRSATIDFDG-TPIKIGIAHGLGNARRLVEEVKNGMSPYHAI 505
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV--MLADPFKNPLVRSLYDEWL 373
EVMACP GC+ GGGQ P + L K +Y E+ L +NP +++LY ++L
Sbjct: 506 EVMACPGGCIGGGGQ--PFHRGRMEVLRKRAAALYQEDRSKTLRKSHENPYIQALYADYL 563
Query: 374 EQPGSEKAKKHVHTEY 389
+P +A K +HT Y
Sbjct: 564 GEPCGPRAHKLLHTHY 579
>gi|338729907|ref|YP_004659299.1| hydrogenase large subunit domain-containing protein [Thermotoga
thermarum DSM 5069]
gi|335364258|gb|AEH50203.1| hydrogenase large subunit domain protein [Thermotoga thermarum DSM
5069]
Length = 660
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 113/390 (28%), Positives = 193/390 (49%), Gaps = 41/390 (10%)
Query: 4 KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDT 62
+ +++ + +GK VI ++P R+++ E F + V +L + LK +G K +FD
Sbjct: 204 RNDVEKVYKALKEGKYVIGMIAPAVRSAIQEEFDLGDDYVTAGRLVSILKMVGFKKVFDV 263
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
S + DL E +EF+ R ++ ++ LP+ +S CP W+ +AE+ Y L +I
Sbjct: 264 SFAADLVAYEEAHEFLERIEKGEK---------LPLFTSCCPAWVKFAEQFYPEY-LSHI 313
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
SSVKSPQQ +G IK + +++G R ++I V++MPC KK EA RE+
Sbjct: 314 SSVKSPQQALGTVIKKYYAKEIGVRLEDICLVSIMPCTAKKFEAEREEHA---------- 363
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 242
G+ VD VLTT E+ I+ +N + +E P D+ G +G G G
Sbjct: 364 ---GI----VDVVLTTRELALFIKSTGINIKTVEPMPFDRPYGLSSQGGISFGKVGGVLG 416
Query: 243 YAETVF--RHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQN 300
+V + K + + +E + T+ +D G+ + A+ G N +
Sbjct: 417 SVVSVIESKGIVKNVTQQQLEKFVALTTVELND---------GRKIYGIAV-SGLGNTKK 466
Query: 301 IVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
++ K+K + VEVMAC GC+ GGGQ P + + K + I +V+++ P
Sbjct: 467 VIEKIKNEELKADIVEVMACSYGCIGGGGQPYPNDSRVREHRAKLHKAIVGTDVLIS-PT 525
Query: 361 KNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
+N + LY+++ E+P S +A + +HT Y
Sbjct: 526 ENYHMLELYNKYFEKPLSHEAHETLHTTYR 555
>gi|303245643|ref|ZP_07331926.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
gi|302492906|gb|EFL52771.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
Length = 585
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 192/378 (50%), Gaps = 27/378 (7%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N K VI+ +P RA+L E G++P V K+ L+ LG +FDT + DLT++E
Sbjct: 226 NPDKVVIVQTAPAVRAALGEDLGVAPGTSVTGKMAAALRRLGFDHVFDTDFAADLTIMEE 285
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EF+ R + D +N LP+L+S CPGW+ + E Q +L S+ KSPQQ G
Sbjct: 286 GSEFLDRLGKHLAGD---TNVKLPILTSCCPGWVKFFEHQFPD-MLDVPSTAKSPQQMFG 341
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + LG +++ V+VMPC KK E AR +F + P+VD
Sbjct: 342 AIAKTYYADLLGIPREKLVVVSVMPCLAKKYECARPEFSVNGN-------------PDVD 388
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E+ L++ ++F L + D L ++GV +GG E R A +
Sbjct: 389 IVITTRELAKLVKRMNIDFAGLPDEDFDAPLGASTGAAPIFGV---TGGVIEAALRTAYE 445
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
G+ ++ ++F+ +R D + A G L + +G N + ++ +V+ + +
Sbjct: 446 LATGETLK-KVDFEDVRGMDGVKKAKVKVGDNELVIGVAHGLGNARELLNRVRAGE-TFH 503
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDE 371
+EVMACP GC+ GGGQ P + L K + +Y E+ L +NP + LY++
Sbjct: 504 AIEVMACPGGCIGGGGQ--PYHHGDVELLKKRTQVLYAEDAGKPLRKSHENPYIIELYEK 561
Query: 372 WLEQPGSEKAKKHVHTEY 389
+L +P SE++ + +HT Y
Sbjct: 562 FLGKPLSERSHQLLHTHY 579
>gi|448508753|ref|XP_003865997.1| Nar1 cytosolic iron-sulfur (FeS) protein assembly machinery protein
[Candida orthopsilosis Co 90-125]
gi|380350335|emb|CCG20556.1| Nar1 cytosolic iron-sulfur (FeS) protein assembly machinery protein
[Candida orthopsilosis Co 90-125]
Length = 533
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 175/387 (45%), Gaps = 95/387 (24%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTT--FLKSLGVKSIFDTSCSRDLTLIEA 73
+ K + S+S QSRASLA + + P++ KL + +G K + TS R L+LI
Sbjct: 117 QDKIFVASISQQSRASLATAYNL-PVETIDKLLIDLLVNQMGFKYVVGTSLGRKLSLINE 175
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
I R S P+LSS CPGW+ YAEK Y+LP IS+VKS QQ G
Sbjct: 176 AQHVITN----------RGKGSNPILSSICPGWVLYAEKT-HPYVLPMISTVKSAQQITG 224
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+K + ++YH+++MPC+DKKLE+AR + G IP+VD
Sbjct: 225 CLLKTLTAHDFHVQKSQVYHLSIMPCFDKKLESARPEIF-------------GDTIPDVD 271
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTN------------------VDDEGHLYG 235
VLT E++ L++ ++ P+ + T +D G
Sbjct: 272 CVLTAKELIALLEEESYQLVPKVNPPIVNLPTEDVYSLVAPNDWPYVQYSWTNDPG---- 327
Query: 236 VAGSSGGYAETVFRHAAKTLFGKVIEGHLE----FKTIR--NSDFREVALEVEGKTLLKF 289
+SGGYA R + + +++GH E K IR NSD E+ L + +
Sbjct: 328 --SASGGYAFNYLRCLQEDM---MLKGHDESGFSMKIIRGKNSDVYEMRLSYKEDKVASA 382
Query: 290 ALCYGFQNLQNIVRKVKMR---------------------------------KCDYQFVE 316
A+ GF+N+QN+VRK+K K DY VE
Sbjct: 383 AIVNGFRNIQNLVRKLKPNGKATGRVNPLAARRRTRIKNSESTPVEETADPSKVDY--VE 440
Query: 317 VMACPSGCLNGGGQIKPKPGQSPKELI 343
+MACPSGC+NGGGQI P S K+ I
Sbjct: 441 IMACPSGCINGGGQINPPKDVSEKDWI 467
>gi|373496024|ref|ZP_09586572.1| hydrogenase, Fe-only [Fusobacterium sp. 12_1B]
gi|371965935|gb|EHO83427.1| hydrogenase, Fe-only [Fusobacterium sp. 12_1B]
Length = 680
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/388 (31%), Positives = 200/388 (51%), Gaps = 26/388 (6%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
NK K VI S SP R +L E FG+ + + K+ + L++LG I DT+ + DLT++E
Sbjct: 88 NKDKIVIFSTSPSVRVALGEEFGMEKGSLVEGKMVSLLRALGGNYILDTNFAADLTIVEE 147
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+E I R + LP +S CP W+ YAE ILP +S+ KSP G
Sbjct: 148 ASELIQRITTG--------SKPLPQFTSCCPAWVKYAE-IYHPEILPNLSTAKSPIGMQG 198
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE-IPEV 192
TIK + +K+ ++I +V V PC KK E R D ++ + G+E + ++
Sbjct: 199 PTIKTYFAKKMNIDLEKIVNVAVTPCTAKKFEIRR-------DEMKDAGKKLGIEDMRDM 251
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D V+TT E+ + V+F+ALEES DK++ G ++G ++GG E R A
Sbjct: 252 DYVITTRELALWAKEAGVDFKALEESSFDKVMGESTGAGIIFG---NTGGVMEAALRTAY 308
Query: 253 KTLFGKVIEGHL-EFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
+ + + L E K +R +E ++V G + A+ YG +N ++ KVK +
Sbjct: 309 EYVTHEKAPADLFELKEVRGMKGIKEAGIKV-GDLTVNVAVIYGTENADKVIEKVKNGEK 367
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSL 368
Y F+EVM CP GC+ GGGQ K + + K ++++Y ++ + + +N + +L
Sbjct: 368 SYHFIEVMTCPGGCIGGGGQPKDLDAERDEINQKRIDSLYKKDTLTPIRSSHENSEIIAL 427
Query: 369 YDEWLEQPGSEKAKKHVHTEYHPVVKSI 396
Y E+ P SE A++ +HT+Y+ K +
Sbjct: 428 YKEFYGHPLSELAEEMLHTQYYDRSKEL 455
>gi|239908986|ref|YP_002955728.1| Fe hydrogenase [Desulfovibrio magneticus RS-1]
gi|239798853|dbj|BAH77842.1| putative Fe hydrogenase [Desulfovibrio magneticus RS-1]
Length = 475
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/391 (29%), Positives = 176/391 (45%), Gaps = 38/391 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+ + ++ +P R +LAE FG++P + KL L+ LG ++DT+ + D+T++E
Sbjct: 110 DPSRVAMVQCAPAVRVTLAEEFGLAPGSLTPGKLAAGLRRLGFAVVYDTTFAADVTVMEE 169
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
E +AR + LP+ +S CP W+ + E + P++SS KSPQQ G
Sbjct: 170 SAELLARIAE---------GGRLPLFTSCCPAWVRHVETAW-PELTPHLSSCKSPQQMAG 219
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + GF P + V+VMPC KK EAAR + R + +VD
Sbjct: 220 ALFKSYAASLDGFDPAAVASVSVMPCTAKKHEAARPEL-----------RSGPAALADVD 268
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+V+T E+ ++ ++F AL P D L G ++ G++GG E R A
Sbjct: 269 AVVTVTELAAWLKEAGIDFAALPGEPFDAPLGRYSGAGVIF---GATGGVMEAALRTAV- 324
Query: 254 TLFGK-----VIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMR 308
L G+ E + F T E+ G L + G N+ ++ V
Sbjct: 325 ALCGEGRETAGPESGIVF-TPAGPGVARAEFELAGNKLAAVTV-SGLANVGPLLEAVAAG 382
Query: 309 KCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK----NPL 364
D+QF+EVM CP GC+ GGG K PG L N A P + NP
Sbjct: 383 TADFQFMEVMCCPGGCVAGGGTPKLLPGVD-VAAAVAARRQALGNHDRALPVRAAHANPA 441
Query: 365 VRSLYDEWLEQPGSEKAKKHVHTEYHPVVKS 395
V LY +LE+P S ++ + +HT Y K
Sbjct: 442 VTELYAAFLERPLSHRSHELLHTVYGGAAKG 472
>gi|154495355|ref|ZP_02034360.1| hypothetical protein PARMER_04412 [Parabacteroides merdae ATCC
43184]
gi|154085279|gb|EDN84324.1| hydrogenase, Fe-only [Parabacteroides merdae ATCC 43184]
Length = 601
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 189/376 (50%), Gaps = 28/376 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI +P R +L FG P V K+ + L+ LG +FDT + DLT++E E
Sbjct: 233 KIVIAQTAPAVRTALGRDFGYEPGTLVTGKMVSALRRLGFDYVFDTDFAADLTIMEEGTE 292
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R + + D E +P+++S CPGW+ + E+ +L +S+ KSPQQ GA
Sbjct: 293 LLQRIGKYLKGDQE---VKMPLMTSCCPGWVSFVEQHFPE-LLDNLSTAKSPQQMFGAIA 348
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +KLG I V++MPC KK EA+R +F + P+VD +
Sbjct: 349 KSYFAEKLGVDRKRIVVVSIMPCLAKKYEASRPEFAVDGN-------------PDVDISI 395
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
T E+ LI+ +NF L +S D+ L G ++ G++GG E R A + L+
Sbjct: 396 YTRELARLIRYANINFAELPDSDFDRPLGESTGAGVIF---GTTGGVIEAACRTAYE-LY 451
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
K ++F+ +R + R ++ +G T +K + +G N + +V +VK Y +
Sbjct: 452 TKKTLPKIDFEELRGLEGIRSATIDFDG-TPIKIGIAHGLGNARRLVEEVKNGMSPYHAI 510
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV--MLADPFKNPLVRSLYDEWL 373
EVMACP GC+ GGGQ P + L K +Y E+ L +NP +++LY ++L
Sbjct: 511 EVMACPGGCIGGGGQ--PFHRGRMEVLRKRAAALYQEDRSKTLRKSHENPYIQALYADYL 568
Query: 374 EQPGSEKAKKHVHTEY 389
+P +A K +HT Y
Sbjct: 569 GEPCGPRAHKLLHTHY 584
>gi|270307598|ref|YP_003329656.1| [Fe] hydrogenase subunit HymC [Dehalococcoides sp. VS]
gi|270153490|gb|ACZ61328.1| [Fe] hydrogenase, Hym C subunit [Dehalococcoides sp. VS]
Length = 573
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/399 (31%), Positives = 206/399 (51%), Gaps = 40/399 (10%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIF 60
E+ ++D + I + K V++ +P R SL E G+ + V KK+ L+ LG ++F
Sbjct: 207 ERSAVDAVWAAIADPTKHVVVQEAPSVRVSLGEELGLPAGTLVAKKMYAALRRLGFDAVF 266
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT+ + DLT++E +E + R K LP ++S CPGW+ + E + P
Sbjct: 267 DTNFTADLTIMEEGSELVERVKDG---------GVLPQITSCCPGWVKFMEHYYPE-LAP 316
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+SS KSPQQ GA K + +K G P I +V+VMPC KK E R +
Sbjct: 317 NVSSAKSPQQMFGAVCKTYYAEKSGIDPKTIINVSVMPCTAKKFECQRPEM--------- 367
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSS 240
D G + +VD VLTT E+ +I+ ++F +LEE P + +L ++ G++
Sbjct: 368 --NDSGFK--DVDYVLTTRELARMIKEAGLDFASLEEEPAEDLLGLYTGAATIF---GAT 420
Query: 241 GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQ 299
GG E R A + G+ +E +L+ + +R + + ++ ++G +K A+ +G N +
Sbjct: 421 GGVMEAAIRSAYTLITGRELE-NLDIEPVRGLEGIKTASVNIDGLE-VKVAVAHGLGNAR 478
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL-ETIYLENVMLAD 358
+++ ++K Y F+E+MACP GC+ GGGQ P + L K E +Y E+ +
Sbjct: 479 HLLEEIKEGTSPYHFIEIMACPGGCVGGGGQ----PIRFDSSLKKKRGEALYEEDRNMPK 534
Query: 359 --PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY--HPVV 393
N V +Y ++LE+P +++ K +HTEY PVV
Sbjct: 535 RCSHHNTSVEKIYADYLEKPLGKRSHKLLHTEYTSRPVV 573
>gi|333997422|ref|YP_004530034.1| iron hydrogenase 1 [Treponema primitia ZAS-2]
gi|299483517|gb|ADJ19598.1| putative iron only hydrogenase large subunit C-terminal domain
[Treponema primitia ZAS-2]
gi|333741284|gb|AEF86774.1| iron hydrogenase 1 ([Fe] hydrogenase) (Fe-onlyhydrogenase) (CpI)
[Treponema primitia ZAS-2]
gi|342308753|gb|AEL20849.1| HydA1 [Treponema primitia ZAS-2]
Length = 454
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 180/375 (48%), Gaps = 35/375 (9%)
Query: 21 IISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
I+ +P R +AE FG+ PL K+ L+ LG K ++DT+ S DLT++E E +
Sbjct: 106 IVQAAPAVRVGIAEDFGL-PLGSLASGKMAAGLRRLGFKKVYDTNFSADLTIMEEGTELV 164
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R + LPM +S CPGW+ Y E + ++SS KSPQQ GA K
Sbjct: 165 KRVTE---------KGVLPMFTSCCPGWVRYMENNH-PELTKHLSSCKSPQQMAGAVFKT 214
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ + G + ++Y+V+VMPC K EAAR + ++D +D V+TT
Sbjct: 215 YGAKLDGVKGAKVYNVSVMPCTCKTFEAARAEM------NSSGWQD-------IDVVITT 261
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ L++ K ++ L + D L G ++GV +GG E R + GK
Sbjct: 262 RELGYLLKYKGIDLATLPDEEFDMPLGEYTGAGAIFGV---TGGVMEAAIRTGYTLITGK 318
Query: 259 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
++ ++ +R SD FR ++ G LK + +N+ ++ +++ D FVEV
Sbjct: 319 ELK-DVDINAVRGSDGFRRAEIKA-GDLTLKVGVVTNLKNIDPVIEQLQAGTLDAHFVEV 376
Query: 318 MACPSGCLNGGGQIK-PKPGQSPKELIKTLETIYLENVMLA--DPFKNPLVRSLYDEWLE 374
M CP GC++GGGQ K P+ Y + L ++ ++ +Y E+LE
Sbjct: 377 MTCPEGCISGGGQPKLLSDTDVPEAYQSRRNATYDHDKALPKRKSHESGAIKKIYAEFLE 436
Query: 375 QPGSEKAKKHVHTEY 389
+P K+ + +HT Y
Sbjct: 437 KPNGHKSHELLHTSY 451
>gi|220931146|ref|YP_002508054.1| NADH dehydrogenase I subunit G [Halothermothrix orenii H 168]
gi|219992456|gb|ACL69059.1| NADH dehydrogenase I subunit G [Halothermothrix orenii H 168]
Length = 570
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/377 (33%), Positives = 195/377 (51%), Gaps = 36/377 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
++ K V++ +P R +L+E FG+ P +F ++ L+ LG +FDT+ + DLT++E
Sbjct: 223 DRDKYVVVQTAPAVRVALSEAFGLKPGTIFTGQMVAGLRRLGFDRVFDTNFTADLTIMEE 282
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
E I R +N LPM +S PGWI Y E +I +S+ KSPQQ G
Sbjct: 283 GTELIERLN---------NNGELPMFTSCSPGWIKYIEHFYPEFI-DNLSTCKSPQQMFG 332
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + K D+I V+VMPC KK EA R + EG +VD
Sbjct: 333 AIAKSYYADKSNIPRDKIVVVSVMPCTAKKFEARRPEM-------------EG----DVD 375
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
VLTT E+ +I+ ++ L DK++ ++ G++GG E R A +
Sbjct: 376 YVLTTRELARMIKEAGIDITNLNAEEHDKLMGTSSGAADIF---GATGGVMEAALRTAYE 432
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ G+ + G L+FK +R + +E + + G T LK A+ +G N++ ++ +K K +Y
Sbjct: 433 LVTGEKL-GQLDFKNVRGEAGIKEAEVTLNG-TQLKVAVAHGLGNVRKLMELIKSGK-EY 489
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
FVE+MACP GC+ GGGQ P ++ I+ L I +N L +NP ++ LY E+
Sbjct: 490 HFVELMACPGGCIGGGGQPIPTSEDIRRKRIEALYKID-KNKKLRKSHENPYIKKLYQEF 548
Query: 373 LEQPGSEKAKKHVHTEY 389
L++ GS KA + +HT Y
Sbjct: 549 LDKHGSHKAHELLHTHY 565
>gi|168205052|ref|ZP_02631057.1| [Fe] hydrogenase [Clostridium perfringens E str. JGS1987]
gi|170663376|gb|EDT16059.1| [Fe] hydrogenase [Clostridium perfringens E str. JGS1987]
Length = 696
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 199/396 (50%), Gaps = 36/396 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K K VI+S SP R SL E F ++ + K+ L+ LG I DT+ + D+T++E
Sbjct: 88 DKDKIVIVSTSPAIRVSLGEEFNMNDGSFVQGKMIALLRKLGFDYILDTNFAADMTIVEE 147
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+E + R ++N LP +S CP W+ YAE IL +IS+ KSP G
Sbjct: 148 ASELVERIT--------KNNKPLPQFTSCCPAWVKYAE-TFHPEILEHISTSKSPIGMQG 198
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE-IPEV 192
TIK + +K+G P +I +V + PC KK E RE ++++ Y G+E + ++
Sbjct: 199 PTIKTYFAKKMGIDPSKIINVALTPCTAKKFEIKRE----EMNASGRYY---GIEDMRDM 251
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D V+TT E+ + K ++F +LE+S DK++ G ++ ++GG E R A
Sbjct: 252 DYVITTRELAIWAKEKGIDFNSLEDSNFDKLMGEASGAGVIFA---NTGGVMEAALRTAY 308
Query: 253 KTLFGKV-------IEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKV 305
K + + +E + +R + F+ LE+ A+ YG +N + K+
Sbjct: 309 KYITKEDPPKDFYDLESVRGMEGVREASFKINDLEI------NIAVIYGTENASKFISKI 362
Query: 306 KMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNP 363
K Y F+EVM CP GC+ GGGQ K K + K K ++ +Y N+ L ++N
Sbjct: 363 KNEDKKYHFIEVMTCPGGCIGGGGQPKDKKFEGDKLREKRIDGLYKRDSNMKLRVSYENE 422
Query: 364 LVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 399
++ LY+E+ +P S A++ +HT Y K + +
Sbjct: 423 EIKKLYEEFYGKPLSNLAEEMLHTIYFDRSKDLGGE 458
>gi|256086412|ref|XP_002579393.1| hypothetical protein [Schistosoma mansoni]
gi|353229755|emb|CCD75926.1| let1/narf-related [Schistosoma mansoni]
Length = 436
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 136/447 (30%), Positives = 206/447 (46%), Gaps = 128/447 (28%)
Query: 47 LTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGW 106
+ + L S+GV + D + +RD+ L EA EFI +K+ D++ +LP+ SS CPGW
Sbjct: 8 IASCLFSIGVHLVTDVTWARDICLYEAGLEFIEHFKKR----DDKCTDTLPLFSSICPGW 63
Query: 107 ICYAEKQ-LGSYIL-----------PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHV 154
ICYAEK L S IL P+IS+V+SPQQ G IK LG ++ +HV
Sbjct: 64 ICYAEKSPLTSSILSSSGYREFSIIPHISNVRSPQQIAGRVIK-----LLG--EEKCFHV 116
Query: 155 TVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQL------K 208
++MPC+DKKLEA+R +F S + Y +P+VD VL T E+L ++
Sbjct: 117 SIMPCFDKKLEASRVEFSVPSKSISDFY------VPDVDLVLATNELLCFLESLIDESND 170
Query: 209 AVNFEALEES-----------------------------PLDKMLTNVDDEGHLYGVAGS 239
V+F E + D V+ +Y +GS
Sbjct: 171 TVSFSFAEHTSEVGESQRLILERLYEIFCVKMSQEKTGVAFDHFPLRVNKMLPMYRHSGS 230
Query: 240 -SGGYAETVFRHAAKTLFGKVI------EGHLEFKTIRNSDFREVAL------------- 279
SGGYA + + AA+ LF + + + + ++N D +E+ L
Sbjct: 231 GSGGYAACILKMAAEELFSVKLKPDILKDERVLTRYLQNRDIQELILFNSKEDRSLAESL 290
Query: 280 -------------EVEGKTLLKFALCYGFQNLQNIVRKVK----MRKCD----------- 311
E + K +L F + GF+N+Q IV+ ++ +KCD
Sbjct: 291 LSSLSNRTPYRHFETQPKAMLVFGIANGFRNIQTIVQYLRKTYQFKKCDDPDLIKSRQIK 350
Query: 312 ----YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRS 367
+ +VEVMACP+GCLNGGGQ+K Q+ EL +L +P N LV++
Sbjct: 351 VHYPFDYVEVMACPNGCLNGGGQVKEIMAQT-SELYASLPVF--------EPMSNDLVKN 401
Query: 368 LYDEWLEQPGSEKAKKHVHTEYHPVVK 394
LY E+++ + K++HT Y V K
Sbjct: 402 LY-EYIK--SKDPDLKYLHTTYKTVPK 425
>gi|333923148|ref|YP_004496728.1| hydrogenase, Fe-only [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333748709|gb|AEF93816.1| hydrogenase, Fe-only [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 521
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 128/416 (30%), Positives = 209/416 (50%), Gaps = 39/416 (9%)
Query: 1 MLEKQSLDEFLSNIN-KGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
+ E+ +D+ L IN K V++ +P +R +L E FG+ + + K LK LG +
Sbjct: 125 ITERDDIDKVLKAINDKNLHVVVQTAPATRVALGEEFGMPAGSIVEGKQVAALKKLGFDA 184
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ S DLT++E E + R + LP +S PGW+ + E +
Sbjct: 185 VFDTNFSADLTIMEEGTELVKRITGELKK-------PLPQFTSCSPGWVKFCE-YFYPDL 236
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L ++SS KSPQQ +GA +K + ++ G P++I+ V++MPC KK E R + D+
Sbjct: 237 LEHMSSAKSPQQMMGAVVKSYYAKQKGIDPEKIFSVSIMPCTAKKYECQRPEMN---DAG 293
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
++ + I +VD VLTT E+ +I+ +NF LE++ D ML ++ G
Sbjct: 294 QKAGKP---NIRDVDVVLTTRELARMIKRAGINFNELEDAQYDSMLGEGTGAAVIF---G 347
Query: 239 SSGGYAETVFRHAAKTLFGK-VIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQ 296
++GG E R A + + E LE +R + +E +LE+ G + A+C G
Sbjct: 348 TTGGVMEAAVRSAYFLITKQNPPEALLELTPVRGLNGVKEASLEIPGAGKINVAVCSGLG 407
Query: 297 NLQNIVRKVKMR-----KCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIK--TLETI 349
N + I+ +V+ Y F+E M+CP GC+ GGGQ P+ P + ++ L ++
Sbjct: 408 NARKILDQVREDIKQGLPPRYHFIEFMSCPGGCIGGGGQ--PRTALPPSDAVRQARLASL 465
Query: 350 YLENVMLADPFKNPL------VRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 399
Y M A +K L V +Y + E P SE A++ +HTEY K +TA+
Sbjct: 466 Y---TMDAKIYKKRLSHENQEVIQIYQNYFEHPMSELAEELLHTEYTDRGKHLTAK 518
>gi|182625936|ref|ZP_02953701.1| [Fe] hydrogenase [Clostridium perfringens D str. JGS1721]
gi|177908849|gb|EDT71347.1| [Fe] hydrogenase [Clostridium perfringens D str. JGS1721]
Length = 696
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 121/395 (30%), Positives = 198/395 (50%), Gaps = 36/395 (9%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K VI+S SP R SL E F ++ + K+ L+ LG + DT+ + D+T++E
Sbjct: 89 KDKIVIVSTSPAVRVSLGEEFNMNNGSFVQGKMIALLRKLGFDYVLDTNFAADMTIVEEA 148
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
+E + R ++N LP +S CP WI YAE IL +IS+ KSP G
Sbjct: 149 SELVERIT--------KNNKPLPQFTSCCPAWIKYAE-TFHPEILDHISTSKSPIGMQGP 199
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE-IPEVD 193
TIK + +K+G P +I +V + PC KK E RE ++++ Y G+E + ++D
Sbjct: 200 TIKTYFAKKMGIDPSKIVNVALTPCTAKKFEIKRE----EMNASGRYY---GIEDMRDMD 252
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT EV + K ++F +LE+S DK++ G ++ ++GG E R A K
Sbjct: 253 YVITTREVAIWAKEKGIDFNSLEDSNFDKLMGEASGAGVIFA---NTGGVMEAALRTAYK 309
Query: 254 TLFGKV-------IEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVK 306
+ + +E + +R + F+ LE+ + YG +N + K+K
Sbjct: 310 YITKEDPPKDFYDLESVRGMEGVREASFKINDLEI------NIVVIYGTENASKFISKMK 363
Query: 307 MRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLADPFKNPL 364
Y F+EVM CP GC+ GGGQ K K + K K ++ +Y + + L ++N
Sbjct: 364 NSDKKYHFIEVMTCPGGCIGGGGQPKDKKFEGDKLREKRIDGLYKRDSSMKLRVSYENEE 423
Query: 365 VRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 399
++ LY+E+ E+P S A++ +HT Y K + +
Sbjct: 424 IKKLYEEFYEKPLSNLAEEMLHTTYFDRSKDLGGE 458
>gi|429859924|gb|ELA34680.1| nuclear prelamin a recognition factor [Colletotrichum
gloeosporioides Nara gc5]
Length = 441
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 142/279 (50%), Gaps = 49/279 (17%)
Query: 92 SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEI 151
S + P+L+S+CPGW+CYAEK Y+LP++S VKSPQ +G +K + +KLG P I
Sbjct: 59 SAPTKPILTSSCPGWVCYAEKTH-PYVLPHLSRVKSPQALMGTLLKTTLSKKLGIPPSRI 117
Query: 152 YHVTVMPCYDKKLEAARE---DFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLK 208
+H+ VMPC+DKKLEA+RE D V+ D + G + +VD V+T+ EVL L + +
Sbjct: 118 WHLAVMPCFDKKLEASREELTDTVWAGDGK------PGRGVRDVDCVITSKEVLMLAESR 171
Query: 209 AVNFEALEESP------------LDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
NF L S LDK L AGSSGG +T+
Sbjct: 172 GFNFFDLPRSNPNLQRATFPDARLDKFLFPRRAAHRSSQAAGSSGGN----LYFTLQTVA 227
Query: 257 GKVIEGHLEFKTIRNSDFRE-VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK------ 309
K ++ RN+D E + G + K A YGF+N+QN+VRK+K +
Sbjct: 228 SKHPNSQIQTIRGRNADVTEYIVASSTGDPIFKAARYYGFRNIQNLVRKLKPARPSRLPG 287
Query: 310 ----------------CDYQFVEVMACPSGCLNGGGQIK 332
+Y +VEVMACP GC NGGGQIK
Sbjct: 288 GKAFGAARRPNGKPAGLEYAYVEVMACPGGCTNGGGQIK 326
>gi|392413421|ref|YP_006450028.1| hydrogenase, Fe-only [Desulfomonile tiedjei DSM 6799]
gi|390626557|gb|AFM27764.1| hydrogenase, Fe-only [Desulfomonile tiedjei DSM 6799]
Length = 416
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 102/347 (29%), Positives = 172/347 (49%), Gaps = 30/347 (8%)
Query: 7 LDEFLSNINKGKAVIISL-SPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSC 64
+DE ++ + K V++++ +P R +AE FG P K+ L+ LG + I+D
Sbjct: 88 VDEVIAALKDPKRVVVAMPAPAIRYGIAECFGAKPGTYAGGKMFAALRQLGFRYIWDNEF 147
Query: 65 SRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
+ DLT+ E EF+ R LP +S CP WI + E + P++S+
Sbjct: 148 TADLTIFEEGTEFVGRLTG-------LIKQPLPQFTSCCPAWIKFMETYYPD-LFPHLST 199
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
KSP +G K + +K P IY V++MPC KK E R + +YRD
Sbjct: 200 AKSPIGMLGPLAKTYGAEKTHTSPANIYTVSIMPCVAKKYEGLRPELA------ASSYRD 253
Query: 185 EGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYA 244
+D+ +TT E+ +I+ ++F +L + D +L G ++ +SGG
Sbjct: 254 -------IDATITTRELAYMIKKAGIDFNSLPDQEADAVLGTSTGAGTIFA---ASGGVM 303
Query: 245 ETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVR 303
E R+A + + K ++ ++F +R +F+E ++V G T +K A+ +G N + +
Sbjct: 304 EAALRYAYEVVTKKKLD-KVDFTAVRGEKNFKEATIKV-GDTDVKVAVIWGLANAKPVCD 361
Query: 304 KVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIY 350
++ +K Y F+EVM CP GC+NGGGQ P PG ++K L ++
Sbjct: 362 AIRAKKSPYHFIEVMTCPGGCVNGGGQPLP-PGTLQSSIMKHLRMVF 407
>gi|312898587|ref|ZP_07757977.1| putative ferredoxin hydrogenase [Megasphaera micronuciformis F0359]
gi|310620506|gb|EFQ04076.1| putative ferredoxin hydrogenase [Megasphaera micronuciformis F0359]
Length = 485
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 189/377 (50%), Gaps = 26/377 (6%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V+ +P R ++AE FG + K+ + L++LG +FDT+ D+T++E +E
Sbjct: 98 KVVVFQTAPAVRVAIAEEFGAEAGTFAQGKMISALRALGGDYVFDTNFGADMTIMEETSE 157
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R N ++P +S CP W+ +AE YI P++SS KSP T
Sbjct: 158 LVRRITTG--------NFAMPQFTSCCPAWVEFAETFYAEYI-PHLSSAKSPILMQNTTE 208
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K +K G P ++ V V PC KK E R+ +L++ E + +GL+ + D +
Sbjct: 209 KIWFAEKAGIDPKKMVTVCVTPCTAKKAEIKRK----ELNAAAEYWHIDGLK--DSDICI 262
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ ++ + ++F L++ D L G ++G S+GG E+ R A
Sbjct: 263 TTRELARWLKAENIDFNTLDDGIFDSHLGEASGGGIIFG---STGGVMESALRSAYYFYT 319
Query: 257 GKVIEG-HLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC--DY 312
GK + ++ ++ +R D +E ++ G +L A+ G N + + K+ DY
Sbjct: 320 GKPMPAEYIPYEPVRGLDGVKEATIDFSGISL-HVAVVSGLGNARRFLDKIMADGTFKDY 378
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLYD 370
F+E MAC GC+NGGGQ K K K + ++Y + V + ++NP ++ LY
Sbjct: 379 TFIEFMACQGGCINGGGQPKVKMPLVQKTNQARMNSLYKRDSEVSIKAAWENPEIQELYS 438
Query: 371 EWLEQPGSEKAKKHVHT 387
++ QP SE+++K++HT
Sbjct: 439 DFYGQPLSERSEKYIHT 455
>gi|241155968|ref|XP_002407667.1| conserved hypothetical protein [Ixodes scapularis]
gi|215494173|gb|EEC03814.1| conserved hypothetical protein [Ixodes scapularis]
Length = 300
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 123/189 (65%), Gaps = 16/189 (8%)
Query: 14 INKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+ + + +++S++PQ AS + + ++ + +LT F K LG + DT+ +R+ TL+E
Sbjct: 105 VEQRQLIVVSIAPQVYASFSGKYDVAYDEAAARLTGFFKRLGAHHVLDTTFAREFTLVEM 164
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
++F+ RY++ +ESD S+LP+L+SACPG++CYAEK G +ILPYIS +SPQQ +G
Sbjct: 165 LHDFLERYRR-KESD----PSALPLLTSACPGFVCYAEKTHGDFILPYISRARSPQQVMG 219
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+ +K ++ K+ PD+IYHV+VMPCYDKKLEA+R DF DE +VD
Sbjct: 220 SLVKKYLASKISRTPDQIYHVSVMPCYDKKLEASRGDFY-----------DEIYSTRDVD 268
Query: 194 SVLTTGEVL 202
V+T+ +L
Sbjct: 269 CVITSSRLL 277
>gi|302337009|ref|YP_003802215.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Spirochaeta smaragdinae DSM 11293]
gi|301634194|gb|ADK79621.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Spirochaeta smaragdinae DSM 11293]
Length = 596
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 124/385 (32%), Positives = 187/385 (48%), Gaps = 34/385 (8%)
Query: 20 VIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
V++ +P RA+L E FG+ P V K+ T L+ LG ++FDT + DLT++E E +
Sbjct: 227 VVVQTAPAIRAALGECFGLPPGTLVTGKMVTALRKLGFDAVFDTDFAADLTIMEEGTELL 286
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R + + + LPM +S PGW+ YAE + LP ISS KSPQQ GA K
Sbjct: 287 TRLQAALTGGPDEKAPPLPMFTSCSPGWVKYAEHYFPDF-LPNISSCKSPQQMFGAVAKT 345
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ +K G P +I V+VMPC KK EA R + + D VD VLTT
Sbjct: 346 YYAKKKGIDPAKIVVVSVMPCTAKKFEAGRPEM------NASGFSD-------VDYVLTT 392
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ LI+ ++F +LEES +D L ++ ++GG E R + + G
Sbjct: 393 RELGRLIKQAGIDFVSLEESSMDAPLGISTGAADIF---ANTGGVMEAALRTVWEIVTGT 449
Query: 259 VIEG-HLEFKTIRN-SDFREVALEVEGKTL---------LKFALCYGFQNLQNIVRKVKM 307
+ +L K + +E +L VE LK A+ +G ++ +++
Sbjct: 450 PLPTENLHIKEVAGLKGIKEASLTVETTVKEWEFLKGVELKVAVAHGLSRAGTLLSEIRE 509
Query: 308 RKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLADPFKNPLV 365
+ +Y FVE+M CP GC+ GGGQ P+ + + IY E+ L NP +
Sbjct: 510 GRKNYHFVEIMTCPGGCIGGGGQ--PRFTDDAVRQAR-IAAIYREDEGKKLRASHLNPAI 566
Query: 366 RSLYDEWLEQPGSEKAKKHVHTEYH 390
LY+E+L +P EK+ +HT YH
Sbjct: 567 IQLYEEYLGKPLGEKSHHLLHTIYH 591
>gi|239904887|ref|YP_002951625.1| Fe hydrogenase [Desulfovibrio magneticus RS-1]
gi|239794750|dbj|BAH73739.1| Fe hydrogenase [Desulfovibrio magneticus RS-1]
Length = 585
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 191/375 (50%), Gaps = 27/375 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI+ +P RA+L E GI+P V K+ L+ LG IFDT + DLT++E +E
Sbjct: 229 KVVIVQTAPAVRAALGEDLGIAPGTSVTGKMAAALRRLGFDHIFDTDFAADLTIMEEGSE 288
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ R + D + LP+L+S CPGW+ + E +L S+ KSPQQ GA
Sbjct: 289 FLDRLTRYLGGD---QTAKLPILTSCCPGWVKFFEHNFQD-MLDVPSTAKSPQQMFGAIA 344
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + LG D++ V+VMPC KK E AR + F +D P+VD V+
Sbjct: 345 KTYYADMLGIPRDKLVVVSVMPCLAKKYERARPE--FSVDGN-----------PDVDIVI 391
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
+T E+ LI+ ++F +L + D L ++GV +GG E R A +
Sbjct: 392 STRELARLIKRMNIDFASLPDEDFDAPLGESTGAAPIFGV---TGGVIEAALRTAYELAT 448
Query: 257 GKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVE 316
G+ ++ ++F+ +R D +VA G L+ + +G N + ++ +V+ + + +E
Sbjct: 449 GETLQ-KVDFEDVRGMDGVKVATVQVGPHELRIGIAHGLGNARKLLNRVREGE-TFHAIE 506
Query: 317 VMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLE 374
VMACP GC+ GGGQ P + L + +Y E+ L +NP + LY+++L
Sbjct: 507 VMACPGGCIGGGGQ--PYHHGDIELLKLRTQVLYAEDAGKPLRKSHQNPYIIELYEKFLG 564
Query: 375 QPGSEKAKKHVHTEY 389
+P SEK+ +HT Y
Sbjct: 565 KPLSEKSHHLLHTHY 579
>gi|164686811|ref|ZP_02210839.1| hypothetical protein CLOBAR_00407 [Clostridium bartlettii DSM
16795]
gi|164604201|gb|EDQ97666.1| hydrogenase, Fe-only [Clostridium bartlettii DSM 16795]
Length = 646
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 196/378 (51%), Gaps = 31/378 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI ++P R ++ E FG + V KL L+ LGV +FDTS + DLT++E E
Sbjct: 288 KLVITQMAPAVRVAIGEAFGFEAGDNVEHKLAAGLRKLGVDYVFDTSWAADLTIMEEAAE 347
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
R ++ D + LPML+S CP W+ + E+ G +L SS KSP Q
Sbjct: 348 LQNRLERYFSGD---KSVKLPMLTSCCPSWVKFIEQNYGD-MLDVPSSAKSPMQMFATVA 403
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K ++ G + DE+ V +MPC KK EA+R +F L+ +VD V+
Sbjct: 404 KDIWAKEKGLKRDEVTSVAIMPCIAKKYEASRPEFSRGLNY-------------DVDYVI 450
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E++ + Q ++ + +E +D+++ G ++ G +GG E R A + +
Sbjct: 451 TTRELIKIFQDSGIDLKTIEGEEIDQVMGEYTGGGIIF---GRTGGVIEAALRTALENMT 507
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G+ IE ++EF ++R D FR +EV G L+ + +G + ++ K++ + + +
Sbjct: 508 GEKIE-NVEFHSLRGFDGFRACDVEV-GDIKLRIGVAHGLEEAGKMLDKIRDGEEFFHAI 565
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKT----LETIYLENVMLADPFKNPLVRSLYDE 371
E+MACP GC+ GGGQ PK ++ +++ L I E M +NP V+++YD+
Sbjct: 566 EIMACPGGCVGGGGQ--PKVRKNKDAILQKRGEGLNNIDREKNMRVSK-ENPEVQAIYDK 622
Query: 372 WLEQPGSEKAKKHVHTEY 389
+L+ P S KA + +HT Y
Sbjct: 623 YLDHPLSHKAHELLHTRY 640
>gi|153807872|ref|ZP_01960540.1| hypothetical protein BACCAC_02158 [Bacteroides caccae ATCC 43185]
gi|149129481|gb|EDM20695.1| hydrogenase, Fe-only [Bacteroides caccae ATCC 43185]
Length = 459
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/394 (29%), Positives = 198/394 (50%), Gaps = 29/394 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
+ E+ + L ++ N K VI+ +P RA+L E FG P V K+ L+ LG
Sbjct: 84 LTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTVVTGKMVYALRELGFDY 143
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E +E + R D + LP+L+S CP W+ + E +
Sbjct: 144 VFDTDFAADLTIMEEGSEILNRLTCYLNGD---KSVRLPILTSCCPAWVNFFEHHFPD-L 199
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ +SPQQ G+ K + +K+G +++ V++MPC KK E AR++F
Sbjct: 200 LDIPSTARSPQQMFGSIAKSYWAKKMGIPKEKLVVVSIMPCLAKKYECARDEFKVN---- 255
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
IP+VD ++T E+ LI+ + F + +SP D + G ++ G
Sbjct: 256 ---------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDNPMGESTGAGVIF---G 303
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R + G+ ++ ++ F+ +R S R + + G LK + +G N
Sbjct: 304 TTGGVMEAALRSVYEIYTGESLK-NVNFEQVRGLSGVRRATINLNGFE-LKIGIAHGLGN 361
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVM 355
++++ ++ +Y +E+MACP GC+ GGGQ P + + L +Y E N
Sbjct: 362 ARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEVLYARANALYREDANKP 419
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP +++LY+E+L +P EK++ +HT Y
Sbjct: 420 LRKSHENPYIKTLYEEYLGKPLGEKSETLLHTHY 453
>gi|392963546|ref|ZP_10328972.1| hydrogenase, Fe-only [Pelosinus fermentans DSM 17108]
gi|392451370|gb|EIW28364.1| hydrogenase, Fe-only [Pelosinus fermentans DSM 17108]
Length = 513
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 118/389 (30%), Positives = 196/389 (50%), Gaps = 35/389 (8%)
Query: 20 VIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
++I +P +R SL E FG+ + + + LK LG ++FDT+ S D+T++E E +
Sbjct: 145 IVIQTAPATRVSLGEEFGLPTGSIVEGQQVAALKLLGFDAVFDTNFSADVTIMEEATELL 204
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R + ++LP +S CPGW+ + E +LP++SSVKSPQQ +G K
Sbjct: 205 KRLDK---------GNALPQFTSCCPGWVKFCEYYYPD-LLPHLSSVKSPQQILGVLAKT 254
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEG-LEIPEVDSVLT 197
+ +++G P+ I V VMPC KK E R + R G +I +VD +LT
Sbjct: 255 YYSERVGIAPENIVSVAVMPCTAKKFECQRPEM-------NAAGRKAGNPQIRDVDFILT 307
Query: 198 TGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFG 257
T E+ L++L+ ++ LE + D ++ G ++G G V A ++L+
Sbjct: 308 TRELARLMKLRKIDLSGLESAAYDHLMGESSGAGVIFGATGG-------VMEAAVRSLYF 360
Query: 258 KVI-----EGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
V E L+F +R +E + + GK LK A+C+G +N + I+ KV+
Sbjct: 361 LVSKQRPPEQLLKFDAVRGLGGVKEAEVMIPGKGSLKVAVCHGLKNARMILEKVRGDNSP 420
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIY-LENVMLAD--PFKNPLVRSL 368
+ F+E M C GC+ GGGQ + + + + +Y L++ + F+N V++L
Sbjct: 421 WSFIEFMGCVGGCIGGGGQPRTSLASADEVRQARIAGLYSLDDRIYRKRASFENQKVQTL 480
Query: 369 YDEWLEQPGSEKAKKHVHTEYHPVVKSIT 397
Y E+L PGS+ A+ +HT Y K +T
Sbjct: 481 YKEYLGNPGSDLAETLLHTHYVDRAKDVT 509
>gi|121534125|ref|ZP_01665950.1| hydrogenases, Fe-only [Thermosinus carboxydivorans Nor1]
gi|121307228|gb|EAX48145.1| hydrogenases, Fe-only [Thermosinus carboxydivorans Nor1]
Length = 574
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 115/379 (30%), Positives = 192/379 (50%), Gaps = 31/379 (8%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+ K V++ +P R +L E G+ + K+ L+ LG +FDT + DLT++E
Sbjct: 221 DPAKHVVVQTAPAVRVALGEALGMGTGSIVTGKMVAALRRLGFDKVFDTDFTADLTIMEE 280
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EF+ R + LPM++S PGW+ + E +L ++S+ KSPQQ G
Sbjct: 281 GSEFLDRLAK---------GGKLPMITSCSPGWVNFIELMYPD-LLDHLSTAKSPQQMFG 330
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + +++G P +I V++MPC KK EA R + + Y+D VD
Sbjct: 331 ALAKTYYAERVGIDPKDIVSVSIMPCTAKKAEAVRPEM------RASGYQD-------VD 377
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
VLTT E+ +I+ ++F L E D L G ++G ++GG E R A+
Sbjct: 378 YVLTTRELARMIREAGIDFAGLPEEEYDAPLGISTGAGVIFG---ATGGVMEAALRTVAE 434
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ GK +E ++F +R + +E + V G +K A+ + N + ++ +++ + DY
Sbjct: 435 LVTGKELEC-IDFHNVRGLTGIKEAEVPV-GDMTVKVAVAHTLANARMLLDQIRRGEADY 492
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEW 372
F+E+MACP GC+ GGGQ P + ++ IK++ +NP ++ LY+ W
Sbjct: 493 HFIEIMACPGGCIGGGGQPIPTCAEVRQQRIKSIYECD-SCSQFRKSHENPAIKELYETW 551
Query: 373 LEQPGSEKAKKHVHTEYHP 391
L P EK+ + +HT YHP
Sbjct: 552 LGTPLGEKSHRLLHTHYHP 570
>gi|326475687|gb|EGD99696.1| iron-sulfur cluster assembly associated protein Nar1 [Trichophyton
tonsurans CBS 112818]
Length = 597
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 120/384 (31%), Positives = 182/384 (47%), Gaps = 79/384 (20%)
Query: 17 GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDTSCS 65
GK + S+SPQ RASLA +GIS + FL G + DT+
Sbjct: 105 GKIFVASVSPQVRASLASTYGISERNAGYMIEQFLSGPNGLRAGGQHGSGFTWVVDTNIM 164
Query: 66 RDLTLIEACNEFIARYKQSQE--SDDERSNSSLP---MLSSACPGWICYAEKQLGSYILP 120
R L + E + DE S+P +L+S+CPGWICYAEK ++LP
Sbjct: 165 RQAVLELSTAEVAESLNAAAPLTPHDESGKFSIPNRPILASSCPGWICYAEKTH-PHVLP 223
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
++S +KSPQ G +K I +KL P +I+H+ VMPC+DKKLEA+R++ +
Sbjct: 224 HLSRLKSPQALTGTFLKTIISKKLNISPSQIWHLAVMPCFDKKLEASRQELT------DV 277
Query: 181 TYRDEGLE-----IPEVDSVLTTGEVLDLIQLKAVNFEALE--------ESPL-DKMLT- 225
++R E L+ + +VD V+T+ E+L L + ++ +L ++P D+ +
Sbjct: 278 SWRGEALDKASSPVRDVDCVITSKELLMLASSRNISLPSLPLEPLPTHLQTPFPDQTIAQ 337
Query: 226 --NVDDEGHLY--GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-E 280
+ + H AG SGGY H T K + ++ + RN+D E L
Sbjct: 338 FLSTSNTLHFTQPAAAGPSGGY----LHHLLTTYQSKHADSIIQSQRGRNADVVEYTLVS 393
Query: 281 VEGKTLLKFALCYGFQNLQNIVRKVKMRK------------------------------- 309
G+ ++K A YGF+N+QN+VRK+K +
Sbjct: 394 AAGEPIIKAARYYGFRNIQNLVRKLKPARASRLPGSRANGPGARARPAPVSNGKPGAPIP 453
Query: 310 -CDYQFVEVMACPSGCLNGGGQIK 332
++ +VEVMACP GC NGGGQI+
Sbjct: 454 PAEFAYVEVMACPGGCTNGGGQIR 477
>gi|302391065|ref|YP_003826885.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Acetohalobium arabaticum DSM 5501]
gi|302203142|gb|ADL11820.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Acetohalobium arabaticum DSM 5501]
Length = 583
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 191/380 (50%), Gaps = 34/380 (8%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
++ + V++ ++P +AS+ E FG+ P + KL T L+ LG IF T + DLT++E
Sbjct: 229 DEDQHVVVQVAPAIQASIGEEFGMEPGTIVTGKLVTALQELGFDKIFSTEFTADLTIMEE 288
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
NE + R K ++ LP +S CPGW+ + E Y L +S+ KSPQQ
Sbjct: 289 GNELLKRIKGQKK---------LPQFTSCCPGWVKFCEHNYPEY-LDNLSTAKSPQQMFS 338
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
K + ++ P++I+ V+VMPC KK E RE+ D G + + D
Sbjct: 339 TLAKTYYAEQEDIDPEDIFTVSVMPCTAKKFEKNREEMA-----------DSGHQ--DTD 385
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+VLTT E +I+ + F L +S DKM+ G ++G ++GG E R A +
Sbjct: 386 AVLTTREAARMIKEMGIQFHKLTDSKYDKMMGAHTGAGTIFG---TTGGVMEAALRTAYE 442
Query: 254 TLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
L + L+ +R D R+ +++ G + K A+ +G +N +++ K++ + +Y
Sbjct: 443 VLTDDELP-RLDLTEVRGMDGIRDANVQLNGDNV-KVAVVHGLKNAADLLDKIEAGEIEY 500
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV--MLADPFKNPLVRSLYD 370
FVEVMACP GC+ GGGQ P + K E +Y + + +NP + LY+
Sbjct: 501 DFVEVMACPGGCIGGGGQ--PFASTTMDVKAKRAEALYQTDKANTIRKSHENPQIIKLYE 558
Query: 371 EWLEQPGSEKAKKHVHTEYH 390
++L +P S + +HT Y
Sbjct: 559 DYLGEPLSSDSHHLLHTSYQ 578
>gi|160902609|ref|YP_001568190.1| hydrogenase, Fe-only [Petrotoga mobilis SJ95]
gi|160360253|gb|ABX31867.1| hydrogenase, Fe-only [Petrotoga mobilis SJ95]
Length = 569
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 122/379 (32%), Positives = 200/379 (52%), Gaps = 39/379 (10%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
++ K VI+ +P R ++AE F P ++ K++ L+ LG +FDT+ + DLT++E
Sbjct: 222 DESKYVIVQTAPAVRVAIAEEFDAEPGKIATKQMVAGLRLLGFDKVFDTNFAADLTIMEE 281
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
NEFI R+K +N LP+ +S PGW+ + E +I +SS KSPQQ G
Sbjct: 282 ANEFIERFK---------NNGKLPLFTSCSPGWVKFLEHNYPEFI-DNLSSCKSPQQMFG 331
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + KLG +++ V+VMPC KK E R + +G +VD
Sbjct: 332 AIAKTYYANKLGISKEDMVVVSVMPCTAKKFERVRPEI-------------KG----DVD 374
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
VLTT E+ + +L ++ + D+ L G ++ G++GG E R A +
Sbjct: 375 YVLTTRELAKMFKLAGIDLLNVPPEEYDEPLGISSGAGAIF---GATGGVMEAALRTAYE 431
Query: 254 TLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ GK +E L+F+ +R + +E +E++G LK A+ G N + ++ +K + +Y
Sbjct: 432 VITGKELE-KLDFEAVRGIEGIKEATVEIDGIN-LKVAVVNGLGNARKVLEMIKSGEKEY 489
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYD 370
FVE MACP GC+ GGGQ P + L+K ++ IY ++ + +NP ++ LY+
Sbjct: 490 HFVEFMACPGGCIGGGGQPIPTNSEI---LLKRMQAIYEVDRSLPIRKSHENPAIKILYE 546
Query: 371 EWLEQPGSEKAKKHVHTEY 389
E+L +P SEK+ + +HT Y
Sbjct: 547 EFLGEPLSEKSHELLHTTY 565
>gi|313898096|ref|ZP_07831635.1| rubredoxin [Clostridium sp. HGF2]
gi|373125118|ref|ZP_09538956.1| hydrogenase, Fe-only [Erysipelotrichaceae bacterium 21_3]
gi|422329339|ref|ZP_16410365.1| hydrogenase, Fe-only [Erysipelotrichaceae bacterium 6_1_45]
gi|312957124|gb|EFR38753.1| rubredoxin [Clostridium sp. HGF2]
gi|371657069|gb|EHO22379.1| hydrogenase, Fe-only [Erysipelotrichaceae bacterium 6_1_45]
gi|371658339|gb|EHO23621.1| hydrogenase, Fe-only [Erysipelotrichaceae bacterium 21_3]
Length = 571
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 189/380 (49%), Gaps = 25/380 (6%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+ K VI SP R SL E FG+ P V K++ L++LG +FDT+ + DLT++E
Sbjct: 88 DSSKTVIAITSPSVRVSLGEEFGMQPGSYVEKQMVGSLRALGFDYVFDTTFAADLTIMEE 147
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+E I R + Q LP +S CP W+ +AE +LP IS+ KSP
Sbjct: 148 ASELIERIQTKQ---------PLPQFTSCCPAWVKFAETYYPE-LLPNISTSKSPISMFA 197
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
T+K +K D+IY V + PC KK E RE+ D+ R G + D
Sbjct: 198 PTVKTWFAEKESLDADDIYVVAITPCTAKKFEIMREELS---DAANYLDRKPG---QDCD 251
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E+ ++ ++ E++EES D ++ G ++G ++GG E R A
Sbjct: 252 RVVTTRELASWMRACNLDLESVEESDYDSLMPRGSGAGIIFG---NTGGVMEAAIRSAYY 308
Query: 254 TLFGKVI-EGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
L K E L+ + +R + + A + LK A+ +G + + + +K +
Sbjct: 309 FLTKKQPQEDLLQLQAVRGLEGVKTAELTIQELPLKVAVVHGTDHARKFLHHIKESGEHF 368
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT-LETIYLEN--VMLADPFKNPLVRSLY 369
FVEVM CP GC++GGGQ K G+ + K ++++Y ++ + L + NP ++ +Y
Sbjct: 369 DFVEVMTCPGGCISGGGQTK-HIGEDMDTVRKARIQSLYDKDSTITLRNSHDNPHIQQVY 427
Query: 370 DEWLEQPGSEKAKKHVHTEY 389
+E+ +P S+ A+ +HT Y
Sbjct: 428 EEFYGKPLSDLAEALLHTNY 447
>gi|325089799|gb|EGC43109.1| iron-sulfur cluster assembly protein [Ajellomyces capsulatus H88]
Length = 632
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 176/377 (46%), Gaps = 66/377 (17%)
Query: 17 GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-----------GVKSIFDTSCS 65
GK + S+SPQ+RASLA +GIS + + FL G + DT+
Sbjct: 129 GKIFVASVSPQARASLAATYGISEREAGYLIEQFLSGPEGLRAGGAYGNGFTWVVDTNVM 188
Query: 66 RDLTLIEACNEFIARYKQSQESDDER-SNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
R + L + +E S+++ E P+LSSACPGWICYAEK ++LP+IS
Sbjct: 189 RQVCLELSVSEVTESLNSSKDTLIETFPAPKRPVLSSACPGWICYAEK-THPHVLPHISR 247
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRD 184
+KSPQ G +K + + L +I+H+ +MPC+DKKLEA+R++ +
Sbjct: 248 LKSPQALTGTLLKTLLSKALNISSSQIWHLAIMPCFDKKLEASRQELTDASWQDASSMTQ 307
Query: 185 EGLE-------IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLY--- 234
+G + +VD V+T+ E+L L + ++ L PL + + +
Sbjct: 308 KGHSPTESYSPVRDVDCVITSRELLMLATSRNISLRNLPLQPLPSPSVPLFPDPYFAPFL 367
Query: 235 ----------GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EVEG 283
AG+SGGY H T + ++ + RNSD E AL G
Sbjct: 368 FPKSSQFVQPSAAGTSGGY----LYHILTTYQHRNPGSQIQTQRGRNSDVIEYALISPSG 423
Query: 284 KTLLKFALCYGFQNLQNIVRKVKMRKC----------------------------DYQFV 315
T++K A YGF+N+QN+VRK+K + DY ++
Sbjct: 424 ATIIKAARYYGFRNIQNLVRKLKPPRASRLPGANPMIGRRAGGGCAATVSSTSATDYAYI 483
Query: 316 EVMACPSGCLNGGGQIK 332
EVMACP GC NGGGQI+
Sbjct: 484 EVMACPGGCTNGGGQIR 500
>gi|333979699|ref|YP_004517644.1| hydrogenase, Fe-only [Desulfotomaculum kuznetsovii DSM 6115]
gi|333823180|gb|AEG15843.1| hydrogenase, Fe-only [Desulfotomaculum kuznetsovii DSM 6115]
Length = 574
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 121/376 (32%), Positives = 192/376 (51%), Gaps = 31/376 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ +P R S+ E FG+ P + KL L+ LG +FDT + DLT++E +E
Sbjct: 224 KHVVVQTAPAVRVSIGEMFGLEPGSIVTGKLVAALRRLGFDKVFDTDFTADLTIMEEGSE 283
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
I R + + LP+++S PGWI + E +LP +S+ KSPQQ GA
Sbjct: 284 LIHRLQ---------NGGRLPLITSCSPGWIKFIE-HFYPNLLPNLSTCKSPQQMFGALA 333
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + QK G P I+ V++MPC KK EA R + YRD VD VL
Sbjct: 334 KTYYAQKEGIDPARIFVVSIMPCTAKKYEAGRPEM------NSSGYRD-------VDVVL 380
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +++ ++F++L E D L G ++ G++GG E R A + +
Sbjct: 381 TTRELGRMLKQAGIDFDSLPEEDYDAPLGISTGAGVIF---GATGGVMEAALRTAYELVT 437
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G + L+F+ +R + +E ++ + G T LK A+ +G N + I+ V ++ +Y F+
Sbjct: 438 GATLVS-LDFEEVRGLEGVKEASVNLAG-TELKVAVAHGLGNARKILDAVVNKEREYHFI 495
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQ 375
E+M CP GC+ GGGQ P + I + + + L +NP V++LY E+L +
Sbjct: 496 EIMCCPGGCIGGGGQPVPVDNEIRARRIAAIYQVD-RQMPLRKSHENPAVQALYREFLGE 554
Query: 376 PGSEKAKKHVHTEYHP 391
P K+ + +HT Y P
Sbjct: 555 PLGHKSHELLHTHYTP 570
>gi|323701421|ref|ZP_08113095.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
gi|323533680|gb|EGB23545.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
Length = 521
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 127/416 (30%), Positives = 209/416 (50%), Gaps = 39/416 (9%)
Query: 1 MLEKQSLDEFLSNIN-KGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
+ E+ +D+ L IN K V++ +P +R +L E FG+ + + K LK LG +
Sbjct: 125 ITERDDIDKVLKAINDKNLHVVVQTAPATRVALGEEFGMPAGSIVEGKQVAALKKLGFDA 184
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ + DLT++E E + R + LP +S PGW+ + E +
Sbjct: 185 VFDTNFTADLTIMEEGTELVKRITGELKK-------PLPQFTSCSPGWVKFCE-YFYPDL 236
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L ++SS KSPQQ +GA +K + ++ G P++I+ V++MPC KK E R + D+
Sbjct: 237 LEHMSSAKSPQQMMGAVVKSYYAKQKGIDPEKIFSVSIMPCTAKKYECQRPEMN---DAG 293
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
++ + I +VD VLTT E+ +I+ +NF LE++ D ML ++ G
Sbjct: 294 QKAGKP---NIRDVDVVLTTRELARMIKRAGINFNELEDAQYDSMLGEGTGAAVIF---G 347
Query: 239 SSGGYAETVFRHAAKTLFGK-VIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQ 296
++GG E R A + + E LE +R + +E +LE+ G + A+C G
Sbjct: 348 TTGGVMEAAVRSAYFLITKQNPPEALLELTPVRGLNGVKEASLEIPGAGKINVAVCSGLG 407
Query: 297 NLQNIVRKVKMR-----KCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIK--TLETI 349
N + I+ +V+ Y F+E M+CP GC+ GGGQ P+ P + ++ L ++
Sbjct: 408 NARKILDQVREDIKQGLPPRYHFIEFMSCPGGCIGGGGQ--PRTALPPSDAVRQARLASL 465
Query: 350 YLENVMLADPFKNPL------VRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 399
Y M A +K L V +Y + E P SE A++ +HTEY K +TA+
Sbjct: 466 Y---TMDAKIYKKRLSHENQEVIQIYQNYFEHPMSELAEELLHTEYTDRGKHLTAK 518
>gi|294655913|ref|XP_458135.2| DEHA2C10406p [Debaryomyces hansenii CBS767]
gi|259511478|sp|Q6BUI4.2|NAR1_DEBHA RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|199430710|emb|CAG86206.2| DEHA2C10406p [Debaryomyces hansenii CBS767]
Length = 545
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 128/390 (32%), Positives = 176/390 (45%), Gaps = 91/390 (23%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTT-FLKSLGVKSIFDTSCSRDLTLIEACNE 76
K + S+S QSRASLA + ++ +V + L F+ +G I TS R L+LI
Sbjct: 109 KVFVASISHQSRASLATAYNLTVEEVDRLLINLFINQMGFSYIVGTSLGRKLSLIYESQN 168
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
I++ ++ E P LSS CPGW+ YAEK Y+LP IS VKSPQQ G +
Sbjct: 169 IISKKEEKFEG---------PTLSSICPGWVLYAEKT-HPYVLPRISDVKSPQQITGCLL 218
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP-EVDSV 195
K + L D IYH+++MPC+DKKLE+AR + + E P +VD V
Sbjct: 219 KTLTARDLNTTRDNIYHLSIMPCFDKKLESARPE------------KGEPESAPNDVDCV 266
Query: 196 LTTGEVLDLIQLKAVNFEALE---ESPLDKMLTNVD--------------DEGHLYGVAG 238
LT E++ L+ + +F ES L L + D
Sbjct: 267 LTAKELITLLDEHSDDFSLFPPQVESILSASLVSTTELYTKCAPKNWPFVDLSWSNDNGS 326
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGH----LEFKTI--RNSDFREVALEVEGKTLLKFALC 292
SSGGYA + A + L K + KTI RNSD E+ L + T+ A+
Sbjct: 327 SSGGYAYHYIKLAQEHLILKDPSTYQPENFTLKTISGRNSDIYELRLIYKDATVASAAIV 386
Query: 293 YGFQNLQNIVRKVK-----------------------------------------MRKCD 311
GF+N+QN+VRK+K KCD
Sbjct: 387 NGFRNIQNLVRKLKPSTKQTSTVKANPLASRRRARLASKTDGTASSNNATQDTADASKCD 446
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKE 341
Y VE+MACP+GC+NGGGQI P P P++
Sbjct: 447 Y--VEIMACPNGCINGGGQINP-PADVPEK 473
>gi|159472741|ref|XP_001694503.1| iron hydrogenase [Chlamydomonas reinhardtii]
gi|18026272|gb|AAL23573.1| iron-hydrogenase HydA2 [Chlamydomonas reinhardtii]
gi|29165649|gb|AAM01186.2| Fe-only hydrogenase precursor [Chlamydomonas reinhardtii]
gi|158276727|gb|EDP02498.1| iron hydrogenase [Chlamydomonas reinhardtii]
Length = 505
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 128/440 (29%), Positives = 208/440 (47%), Gaps = 66/440 (15%)
Query: 4 KQSLDEFLSNINKGKAVIIS-LSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFD 61
K +L+E + G+ V+I+ ++P R ++AE FG++P V KL T L++LG +FD
Sbjct: 73 KLALEELDKPKDGGRKVLIAQVAPAVRVAIAESFGLAPGAVSPGKLATGLRALGFDQVFD 132
Query: 62 TSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY--IL 119
T + DLT++E E + R K+ E+ S+ LPM +S CPGW+ EK SY ++
Sbjct: 133 TLFAADLTIMEEGTELLHRLKEHLEAH-PHSDEPLPMFTSCCPGWVAMMEK---SYPELI 188
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE---------- 169
P++SS KSPQ +GA +K ++ +K G +I V+VMPC K+ EA RE
Sbjct: 189 PFVSSCKSPQMMMGAMVKTYLSEKQGIPAKDIVMVSVMPCVRKQGEADREWFCVSEPGVR 248
Query: 170 --DFVFQLDSQEETYRDEGLEIPEV-----DSVL-----------TTGEVLDLIQLKAVN 211
D V +++ G+ +PE+ D L TTG V++ A
Sbjct: 249 DVDHVITTAELGNIFKERGINLPELPDSDWDQPLGLGSGAGVLFGTTGGVMEAALRTA-- 306
Query: 212 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 271
+E + + PL ++ N+ + L G+ +S A + F +++ L K
Sbjct: 307 YEIVTKEPLPRL--NLSEVRGLDGIKEAS-----VTLVPAPGSKFAELVAERLAHKVEEA 359
Query: 272 SDFREVAL--------------------EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
+ A + +G L+ A+ G N + ++ K+ +
Sbjct: 360 AAAEAAAAVEGAVKPPIAYDGGQGFSTDDGKGGLKLRVAVANGLGNAKKLIGKMVSGEAK 419
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDE 371
Y FVE+MACP+GC+ GGGQ + Q ++ L + N L +N V LY E
Sbjct: 420 YDFVEIMACPAGCVGGGGQPRSTDKQITQKRQAALYDLDERNT-LRRSHENEAVNQLYKE 478
Query: 372 WLEQPGSEKAKKHVHTEYHP 391
+L +P S +A + +HT Y P
Sbjct: 479 FLGEPLSHRAHELLHTHYVP 498
>gi|83590553|ref|YP_430562.1| Iron hydrogenase, small subunit [Moorella thermoacetica ATCC 39073]
gi|83573467|gb|ABC20019.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Moorella
thermoacetica ATCC 39073]
Length = 573
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 200/374 (53%), Gaps = 32/374 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ +P +R S+ + FG++P + ++ L+ LG +FDT S DLT++E +E
Sbjct: 224 KFVVVQTAPATRVSIGQEFGLAPGSINTGQMVAALRRLGFDRVFDTDFSADLTIMEEGSE 283
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
FI R+ + + LP+++S PGWI + E ++P +S+ KSPQQ GA
Sbjct: 284 FIERFTK---------DGPLPLITSCSPGWIKFME-HFYPELIPNVSTCKSPQQMFGAVA 333
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +K G P + V++MPC KK E R + RD G + +VD VL
Sbjct: 334 KTYYARKAGVDPARMVVVSIMPCTAKKFECQRPEM-----------RDSGYQ--DVDYVL 380
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ ++F+ L E D L G ++ G++GG E R A + +
Sbjct: 381 TTRELARMIREAGIDFKNLPEEQYDDPLGESTGAGVIF---GATGGVMEAALRTAYELIT 437
Query: 257 GKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G+ + L+F IR +E ++++G T ++ A+ + + + ++ +VK + Y F+
Sbjct: 438 GETLPA-LDFYDIRGLKGIKEATVDIKG-TKVRVAVAHSLGHARQLLERVKAGE-QYHFI 494
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQ 375
E+M CP GC+ GGGQ P + ++ IK + + +E + + +NP V++LY E+L +
Sbjct: 495 EIMCCPGGCIGGGGQPIPTNTEIREQRIKGIYQVDME-MPIRKSHENPSVQALYREFLGK 553
Query: 376 PGSEKAKKHVHTEY 389
P SEK+ +HTEY
Sbjct: 554 PLSEKSHHLLHTEY 567
>gi|323702078|ref|ZP_08113746.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
gi|333923416|ref|YP_004496996.1| hydrogenase, Fe-only [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|323532960|gb|EGB22831.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
gi|333748977|gb|AEF94084.1| hydrogenase, Fe-only [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 593
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 124/384 (32%), Positives = 195/384 (50%), Gaps = 41/384 (10%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+ K V++ +P R ++AE FG+ P + KL L+ LG S+ DT + DLT++E
Sbjct: 224 DPNKHVVVQTAPAVRVAIAEEFGLEPGTIGTGKLVAALRRLGFDSVMDTDFTADLTIMEE 283
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
EFI R + LPM++S PGWI Y E +L ++S+ KSPQQ G
Sbjct: 284 GTEFIKRVTEG---------GVLPMITSCSPGWIKYIEMYYPD-LLAHLSTCKSPQQMFG 333
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A +K +K G P IY V++MPC KK EA R++ +D G + +VD
Sbjct: 334 ALVKTFYAEKKGIDPASIYSVSIMPCTAKKFEAQRDEL-----------KDSGFQ--DVD 380
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA---GSSGGYAETVFRH 250
VLTT E+ +++ ++++ L E D D G G A G++GG E R
Sbjct: 381 VVLTTRELGRMLREIGIDWDNLPEEQYD------DPMGISTGAAVIFGATGGVMEAAVRT 434
Query: 251 AAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK 309
+ + + + + +R +E L+V G +K A+ + N + ++ K++ +
Sbjct: 435 VYEVITKETMP-DINLTPVRGMKGIKEATLKV-GDLEVKVAVAHTLGNARKLLDKIRANE 492
Query: 310 CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRS 367
CDY F+E+M CP GC+ GGGQ P P L K + IY E + + +NP +++
Sbjct: 493 CDYHFIEIMCCPGGCIGGGGQ--PIPTNLEVRL-KRIAGIYKADEELPIRKSHENPAIKA 549
Query: 368 LYDEWLEQPGSEKAKKHVHTEYHP 391
+Y+E+L QP EK+ K +HT Y P
Sbjct: 550 IYEEFLGQPLGEKSHKLLHTHYIP 573
>gi|261367572|ref|ZP_05980455.1| periplasmic [Fe] hydrogenase, large subunit [Subdoligranulum
variabile DSM 15176]
gi|282570359|gb|EFB75894.1| hydrogenase, Fe-only [Subdoligranulum variabile DSM 15176]
Length = 585
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 124/385 (32%), Positives = 191/385 (49%), Gaps = 44/385 (11%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K ++ ++P R + E G++P Q ++ L+ LG +FDTS S DLT++E E
Sbjct: 224 KITVVQIAPAVRTAWGETLGLTPEQATVHRMAACLRRLGFDYVFDTSFSADLTIMEEGTE 283
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ RY+ + D LPM +S CPGW+ Y + + +S+ KSPQQ GA
Sbjct: 284 FLHRYQAGETRD-------LPMFTSCCPGWVRYLKSHYPQWT-DRLSTAKSPQQMFGAVT 335
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K++ QKLG PD+IY V++MPC KK E E +D VD VL
Sbjct: 336 KNYFAQKLGVSPDKIYCVSIMPCIAKKQECDLPTM------HTEAGKD-------VDLVL 382
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E++ +I+ + ++ EAL E D L G ++GV +GG E R A +
Sbjct: 383 TTRELVRMIRAERLHPEALPEEAFDSPLGTYTGAGVIFGV---TGGVMEAALRSAYYLVN 439
Query: 257 GKVIEGHLEFKTIRNSDFREVALEVE----GKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
GK + F +R F + E E +++ A+ G N +++ + K Y
Sbjct: 440 GKNPKAE-AFTAVRGHAFAQGWTEAEFDLGDGAIVRTAVVNGLGNTHHLLEAIAAGKVHY 498
Query: 313 QFVEVMACPSGCLNGGGQI-----KPKPGQSPKEL--IKTLETIYLENVMLADPFKNPLV 365
FVEVMACP GC GGGQ + + + K L + T+ + +NP +
Sbjct: 499 DFVEVMACPGGCAGGGGQPQNLDDEERAAERGKRLYALDQCSTLRFSH-------ENPEI 551
Query: 366 RSLYDEWLEQPGSEKAKKHVHTEYH 390
++LY E L+ PGSE+A++ +HT++H
Sbjct: 552 QTLYREALDAPGSERAEEWLHTDHH 576
>gi|399216842|emb|CCF73529.1| unnamed protein product [Babesia microti strain RI]
Length = 510
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 122/401 (30%), Positives = 185/401 (46%), Gaps = 86/401 (21%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
MLE E + K ++S+S QS SL+ +G+ + F ++ + GVK +F
Sbjct: 68 MLENNFYLEVFDKLKGSKCPVLSISTQSLLSLSTMYGLKLTETFLRIKKYFIGKGVKYVF 127
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
+ S + + L E+ EF YK SN++L + S CPGW+ YAEK L L
Sbjct: 128 NQSLAEAIQLQESKKEFDKSYK---------SNTTL--ICSNCPGWVIYAEKSLDREFLG 176
Query: 121 YISSVKSPQQTIGATIKH--HICQKLGFR----------------------PDEIYHVTV 156
+S++ Q G +K I K+ F P +IYH+ +
Sbjct: 177 NMSTIMPLQAIQGLLVKFVVTIRHKMEFNMFKYREIFNPLLLPIININEITPSDIYHLCI 236
Query: 157 MPCYDKKLEAAREDFV---------FQLDSQEETYRDEGLEIPEVDSVLTTGEVL----- 202
PC+DKKLE R D V Q+D+ + + L +D V+TTGE+
Sbjct: 237 TPCHDKKLELLRPDLVANYSNLCKLLQIDNDSNSVKTTSL----IDGVITTGELEQLLND 292
Query: 203 DLIQLKAVNFEALEES----PLD----KMLTNVDDEGHLYGVAGS------------SGG 242
D + +VN E +S P+D K L + G + S SGG
Sbjct: 293 DFYNISSVNDELYADSDLLTPVDLESIKSLLGIQQNGVTNDIINSGIMPYDNTEFVHSGG 352
Query: 243 YAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL---------EVEG--KTLLKFAL 291
Y E +F++AAK GK+I+ ++FK + N DF++ L E++ K +K L
Sbjct: 353 YGEELFKYAAKRYHGKIID-TVKFKNVTNKDFKQATLLTHDNIDNKEIKSCDKPTIKITL 411
Query: 292 CYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK 332
GF+N+ N+V +K + +VE+MACP GC+NGGGQIK
Sbjct: 412 ATGFRNIANVVSNIKTN-LGFNYVELMACPGGCINGGGQIK 451
>gi|423343770|ref|ZP_17321483.1| hydrogenase, Fe-only [Parabacteroides johnsonii CL02T12C29]
gi|409214792|gb|EKN07801.1| hydrogenase, Fe-only [Parabacteroides johnsonii CL02T12C29]
Length = 584
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 188/376 (50%), Gaps = 28/376 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI +P R +L FG P V K+ + L+ LG +FDT + DLT++E E
Sbjct: 216 KIVIAQTAPAVRTALGRDFGYEPGTLVTGKMVSALRGLGFDYVFDTDFAADLTIMEEGTE 275
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R + + D E +P+++S CPGW+ + E+ +L +S+ KSPQQ GA
Sbjct: 276 LLQRIGKYLKGDQE---VKMPLMTSCCPGWVSFVEQHFPE-LLDNLSTAKSPQQMFGAIA 331
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +KLG +I V++MPC KK EA+R +F + P+VD +
Sbjct: 332 KSYFAEKLGVDRKQIVVVSIMPCLAKKYEASRPEFAVDGN-------------PDVDISI 378
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
T E+ LI+ +NF L +S D+ L G ++ G++GG E R A + L+
Sbjct: 379 YTRELARLIRYANINFSELPDSDFDRPLGESTGAGVIF---GTTGGVIEAACRTAYE-LY 434
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
K ++F+ +R + R ++ +G T +K + +G N + ++ VK Y +
Sbjct: 435 TKKALPKIDFEELRGLEGIRSATIDFDG-TPIKIGIAHGLGNARKLIEDVKNGTSPYHAI 493
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV--MLADPFKNPLVRSLYDEWL 373
EVMACP GC+ GGGQ P + L K +Y E+ L +NP +++LY +L
Sbjct: 494 EVMACPGGCIGGGGQ--PFHRGRMEVLRKRAAALYQEDRSKTLRKSHENPYIQALYANYL 551
Query: 374 EQPGSEKAKKHVHTEY 389
+P +A + +HT Y
Sbjct: 552 GEPCGPRAHELLHTHY 567
>gi|304440540|ref|ZP_07400427.1| ferredoxin hydrogenase [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371018|gb|EFM24637.1| ferredoxin hydrogenase [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 577
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 120/379 (31%), Positives = 190/379 (50%), Gaps = 33/379 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ ++P RAS AE G+S + K+ LK +G +FDT DLT++E +E
Sbjct: 221 KTVVVQVAPAVRASWAEQMGLSEEEAPVGKIFDALKKMGADYVFDTVFGADLTIMEEASE 280
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ R+ ER PM +S CPGW+ + + + ++L +S+ KSPQQ GA +
Sbjct: 281 FLERFTAGDLK--ER-----PMFTSCCPGWVRFVKTEF-PHMLSSLSTAKSPQQMFGAVM 332
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +K+G P++I ++VMPC KK E + + + E D V+
Sbjct: 333 KSYFAEKIGKNPNDIVAISVMPCVAKKAEREMDMYYGEFAGH------------ETDIVI 380
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ +N LE P D + + G ++ G++GG E R A TL
Sbjct: 381 TTRELTRMIKSAHINVSNLENIPSDNPMEDGTGAGVIF---GATGGVMEAALRTAYFTLK 437
Query: 257 GKVIEGHLEFKTIRN------SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
G+ F +RN S RE +++G ++ A+ G N + ++ ++ +
Sbjct: 438 GENPPNDA-FLRVRNDGSKDGSGIRESEFDIDG-VKVRTAVVSGLGNTRELLERIDKGEA 495
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYD 370
+Y FVEVMACP GC+ GGGQI + E K L + +N NP ++ LYD
Sbjct: 496 NYDFVEVMACPGGCVGGGGQIIHDGQEKAFERGKKLYKLD-DNYEYRCSHDNPDIKKLYD 554
Query: 371 EWLEQPGSEKAKKHVHTEY 389
E+L +P S KA +HTE+
Sbjct: 555 EYLGKPLSFKAHMLLHTEH 573
>gi|323141449|ref|ZP_08076338.1| rubredoxin [Phascolarctobacterium succinatutens YIT 12067]
gi|322414029|gb|EFY04859.1| rubredoxin [Phascolarctobacterium succinatutens YIT 12067]
Length = 641
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 201/390 (51%), Gaps = 30/390 (7%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVF--KKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
+K K VI+S SP R +L E FG+ P F K+ L++LGV + DT+ + DLT++E
Sbjct: 46 DKDKIVIVSTSPSVRVALGEEFGM-PKGAFVQGKMVALLRALGVDYVLDTNFAADLTIVE 104
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+E +AR K ++ LP +S CP W+ +AE +LP++S+ KSP
Sbjct: 105 EASELLARIKGE-------TDKPLPQFTSCCPAWVKFAETYYPE-LLPHVSTAKSPIGMQ 156
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGL-EIPE 191
G TIK + QK+G P +I +V + PC KK E RE+ + G+ E+ +
Sbjct: 157 GPTIKTYFAQKMGIDPRKIVNVALTPCTAKKFEIRREEM-------NAAGQKLGIAELRD 209
Query: 192 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHA 251
+D+V+TT E+ + ++F +LE+S DK + G ++ G++GG E R A
Sbjct: 210 MDNVITTRELALWAKEAGIDFTSLEDSDFDKFMGEASGAGVIF---GNTGGVMEAALRTA 266
Query: 252 AKTLFGKVIEGH-LEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK 309
L G+ L+ + +R D RE ++E+ G+ ++ A+ +G +N++ ++ +
Sbjct: 267 YAYLTGEQPPKEILKLEPVRGYDGLREASVEIAGR-VINVAVVHGTENVRKLIAGGIEK- 324
Query: 310 CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLADPFKNPLVRS 367
Y F+EVM CP GC+ GGGQ K + +E +Y + + L +N ++
Sbjct: 325 --YHFIEVMTCPGGCIGGGGQPKDFAYDADAARKARIEGLYERDAEMELHLSHENKEIQQ 382
Query: 368 LYDEWLEQPGSEKAKKHVHTEYHPVVKSIT 397
LY E+ + P S+ A+ +HT Y +T
Sbjct: 383 LYQEFYDTPLSDMAEAMLHTAYQDRSADLT 412
>gi|282857806|ref|ZP_06267014.1| iron hydrogenase 1 ([Fe] hydrogenase) (Fe-only hydrogenase) (CpI)
[Pyramidobacter piscolens W5455]
gi|282584367|gb|EFB89727.1| iron hydrogenase 1 ([Fe] hydrogenase) (Fe-only hydrogenase) (CpI)
[Pyramidobacter piscolens W5455]
Length = 577
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 183/380 (48%), Gaps = 38/380 (10%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ ++P R + E FG+ P + +L L+ +G +FDT+ S DLT++E +E
Sbjct: 221 KIVLVQIAPAIRTAWGEEFGMKPGEATVTRLAAALRLVGFDYVFDTNFSADLTIMEEGSE 280
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ R K R PM +S CPGWI + + ++ +SS KSPQQ GA
Sbjct: 281 FVERLKH-------RDREKFPMFTSCCPGWIRFVKSHWPQFV-GQLSSAKSPQQMFGAVA 332
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K Q LG P I+ V++MPC KK E A D +VD L
Sbjct: 333 KSWYAQTLGVDPSRIFSVSIMPCLAKKAECALPGM------------DGAGAGQDVDVAL 380
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT EV LI+ + + L + LD L G ++G ++GG E R A +
Sbjct: 381 TTREVSRLIRSLQIQPQDLADEELDMPLGVGSGAGAIFG---ATGGVMEAALRSAFFLVT 437
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
GK E FK++R D ++E ++ G T LK A+ G N ++ + Y FV
Sbjct: 438 GKNPEPD-AFKSVRGMDGWKEATFDIAG-TALKVAVVNGLGNADKLLAALDRGDVRYDFV 495
Query: 316 EVMACPSGCLNGGGQ-----IKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYD 370
EVMACP GC+ GGGQ ++ P ++P TL I + L +NP + + Y
Sbjct: 496 EVMACPGGCVGGGGQPIHDRVEMAPQRAP-----TLYDID-RGMELRFSHENPSILACYQ 549
Query: 371 EWLEQPGSEKAKKHVHTEYH 390
++L P SEKA + +HT YH
Sbjct: 550 QFLGAPLSEKAHRLLHTTYH 569
>gi|169343832|ref|ZP_02864829.1| [Fe] hydrogenase [Clostridium perfringens C str. JGS1495]
gi|169297952|gb|EDS80043.1| [Fe] hydrogenase [Clostridium perfringens C str. JGS1495]
Length = 696
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 199/396 (50%), Gaps = 36/396 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K K VI+S SP R SL E F ++ + K+ L+ LG + DT+ + D+T++E
Sbjct: 88 DKDKIVIVSTSPAIRVSLGEEFNMNDGSFVQGKMIALLRKLGFDYVLDTNFAADMTIVEE 147
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+E + R ++N L +S CP W+ YAE IL +IS+ KSP G
Sbjct: 148 ASELVERIT--------KNNKPLSQFTSCCPAWVKYAE-TFHPEILEHISTSKSPIGMQG 198
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE-IPEV 192
TIK + +K+G P +I +V + PC KK E RE ++++ Y G+E + ++
Sbjct: 199 PTIKTYFAKKMGIDPYKIINVALTPCTAKKFEIKRE----EMNASGRYY---GIEDMRDM 251
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D V+TT EV + K ++F +LE+S DK++ G ++ ++GG E R A
Sbjct: 252 DYVITTREVAIWAKEKGIDFNSLEDSNFDKLMGEASGAGVIFA---NTGGVMEAALRTAY 308
Query: 253 KTLFGKV-------IEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKV 305
K + + +E + +R + F+ LE+ A+ YG +N + K+
Sbjct: 309 KYITKEDPPKDFYDLESVRGMEGVREASFKINDLEI------NIAVIYGTENASKFISKM 362
Query: 306 KMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNP 363
K Y F+EVM CP GC+ GGGQ K K + K K ++ +Y N+ L ++N
Sbjct: 363 KNSDKKYHFIEVMTCPGGCIGGGGQPKDKKFEGDKLREKRIDGLYKRDSNMKLRVSYENE 422
Query: 364 LVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQ 399
++ LY+E+ E+P S A++ +HT Y K + +
Sbjct: 423 EIKKLYEEFYEKPLSNLAEEMLHTIYFDRSKDLGGE 458
>gi|150016647|ref|YP_001308901.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
gi|149903112|gb|ABR33945.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
Length = 644
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 120/383 (31%), Positives = 195/383 (50%), Gaps = 31/383 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI ++P R ++ E FG P + V KK+ L+ LGV +FDTS DLT++E E
Sbjct: 285 KVVITQMAPAVRVAIGEAFGFEPGENVEKKIAAGLRKLGVDYVFDTSWGADLTIMEEAAE 344
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
R ++ D+ + LP+L+S CP WI + E+ G +L SS KSP +
Sbjct: 345 LQERLERHLAGDE---SVKLPILTSCCPSWIKFIEQNYGD-MLDVPSSAKSPMEMFAIVA 400
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K ++ G DE+ V +MPC KK EA+R +F ++ +VD V+
Sbjct: 401 KEIWAKEKGLSRDEVTSVAIMPCIAKKYEASRAEFSVDMNY-------------DVDYVI 447
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E++ + + +N + +E+ +D ++ G ++G +GG E R A + +
Sbjct: 448 TTRELIKIFENSGINLKEIEDEEIDTVMGEYTGAGIIFG---RTGGVIEAATRTALEKMT 504
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G+ + ++EF+ +R D FR LE G L+ + +G + ++ K++ + + +
Sbjct: 505 GERFD-NIEFEGLRGWDGFRVCELEA-GDIKLRIGVAHGLREAAKMLDKIRSGEEFFHAI 562
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV----MLADPFKNPLVRSLYDE 371
E+MAC GC+ GGGQ K K G L K E L N+ L +NP V ++Y++
Sbjct: 563 EIMACVGGCIGGGGQPKTK-GNKQAALQKRAEG--LNNIDRSKTLRRSNENPEVLAIYEK 619
Query: 372 WLEQPGSEKAKKHVHTEYHPVVK 394
+L+ P S KA + +HT Y P VK
Sbjct: 620 YLDHPLSNKAHELLHTVYFPRVK 642
>gi|210621816|ref|ZP_03292845.1| hypothetical protein CLOHIR_00790 [Clostridium hiranonis DSM 13275]
gi|210154580|gb|EEA85586.1| hypothetical protein CLOHIR_00790 [Clostridium hiranonis DSM 13275]
Length = 578
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 202/392 (51%), Gaps = 31/392 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKS 58
+ E+ +D+ + + K ++ ++P RA+ E G+ K+L L+ +G
Sbjct: 203 LRERDDVDKVFDALADPEKITVVQVAPAVRAAWGESLGLEREAATVKRLVAALRKMGFNY 262
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
IFDT+ S DLT++E +EF+ + K + N+ PM +S CPGW+ Y + +
Sbjct: 263 IFDTTFSADLTIMEEGSEFVEKLKN-------KENNKFPMFTSCCPGWVRYMKSHYPD-M 314
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+ +S+ KSPQQ GA K + + L PD+IY +++MPC KK E + +
Sbjct: 315 VDLLSTSKSPQQMFGAITKSYYAELLDVSPDKIYSISIMPCIAKKHEC-------DIPTI 367
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+T D+ +VD V+TT EV +I+ + ++ LEE D L G ++G
Sbjct: 368 NDTEADK-----DVDVVITTREVDRMIRAEHIDVANLEEEEFDMPLGVGTGAGVIFG--- 419
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
++GG E R A + G+ + FK +R D ++E +E+ G T++K A+ G +N
Sbjct: 420 ATGGVMEAALRSAYYLVTGENPDPD-AFKEVRGMDGWKESQIEING-TVVKTAVTSGLKN 477
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLA 357
+++ ++ + +Y FVEVMACP GC GGGQ GQ+ + + N+ +
Sbjct: 478 TDKLIQAIRNGEVEYDFVEVMACPGGCSGGGGQ-PIHLGQTSNRVDNLYKLDKEANLRFS 536
Query: 358 DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+NP + +Y+++L P SEKA K +HT++
Sbjct: 537 --HENPSIVKVYEDYLGAPMSEKAHKLLHTDH 566
>gi|423217815|ref|ZP_17204311.1| hydrogenase, Fe-only [Bacteroides caccae CL03T12C61]
gi|392627318|gb|EIY21353.1| hydrogenase, Fe-only [Bacteroides caccae CL03T12C61]
Length = 588
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 115/394 (29%), Positives = 198/394 (50%), Gaps = 29/394 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
+ E+ + L ++ N K VI+ +P RA+L E FG P V K+ L+ LG
Sbjct: 213 LTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTVVTGKMVYALRELGFDY 272
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E +E + R D + LP+L+S CP W+ + E +
Sbjct: 273 VFDTDFAADLTIMEEGSEILNRLTCYLNGD---KSVRLPILTSCCPAWVNFFEHHFPD-L 328
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ +SPQQ G+ K + +K+G +++ V++MPC KK E AR++F
Sbjct: 329 LDIPSTARSPQQMFGSIAKSYWAKKMGIPKEKLVVVSIMPCLAKKYECARDEFKVN---- 384
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
IP+VD ++T E+ LI+ + F + +SP D + G ++ G
Sbjct: 385 ---------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDNPMGESTGAGVIF---G 432
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R + G+ ++ ++ F+ +R S R + + G LK + +G N
Sbjct: 433 TTGGVMEAALRSVYEIYTGESLK-NVNFEQVRGLSGVRRATINLNGFE-LKIGIAHGLGN 490
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVM 355
++++ ++ +Y +E+MACP GC+ GGGQ P + + L +Y E N
Sbjct: 491 ARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEVLYARANALYREDANKP 548
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP +++LY+E+L +P EK++ +HT Y
Sbjct: 549 LRKSHENPYIKTLYEEYLGKPLGEKSETLLHTHY 582
>gi|171687247|ref|XP_001908564.1| hypothetical protein [Podospora anserina S mat+]
gi|170943585|emb|CAP69237.1| unnamed protein product [Podospora anserina S mat+]
Length = 591
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 125/374 (33%), Positives = 179/374 (47%), Gaps = 74/374 (19%)
Query: 18 KAVIISLSPQSRASLAEHFG--ISPLQVFKKLTTFLK--SLGVKS----------IFDTS 63
K + S+SPQ ASLA G + Q +T L SLG+ S I T+
Sbjct: 119 KLFVCSVSPQVLASLAAAIGNNTTQSQAANMITHLLSNPSLGLPSGGRHNNGFTYIVPTN 178
Query: 64 CSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYIS 123
+R+ +L+ +E I S S+D + P+L+S+CPGW+CYAEK Y+LPY+S
Sbjct: 179 RAREASLVLGADEVI-----SSSSNDIKK----PVLTSSCPGWVCYAEKTH-PYVLPYLS 228
Query: 124 SVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE---DFVFQLDSQEE 180
VKSPQ G +K + + L PD I+H+++MPC+DKKLEA+RE D V+ S
Sbjct: 229 KVKSPQALTGTLLKTTLSKTLNISPDRIWHLSIMPCFDKKLEASREELTDAVWNNTSNNP 288
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF----------------EALEESPLDKML 224
I +VD V+TT E+L L + + +NF +A+ + L
Sbjct: 289 ATTATQKGIRDVDCVITTKEILMLAESRNINFFSLPTTPLPQTTPFPHKAMGDFLLPFSA 348
Query: 225 TNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-LEVEG 283
+E AG+SGG + TL + L RN+D E + L G
Sbjct: 349 PGKKNEQQSLS-AGTSGGNLHYILH----TLLSQNPGSTLTTTRGRNADVIEYSILSSSG 403
Query: 284 KTLLKFALCYGFQNLQNIVRKVKMRK-------------------------CDYQFVEVM 318
+ + K A YGF+N+QN+VRK+K + D+ +VEVM
Sbjct: 404 EQIFKAARYYGFRNIQNLVRKLKPARPPRMPGGKPFGSARRPGKAAGATNALDFSYVEVM 463
Query: 319 ACPSGCLNGGGQIK 332
ACP GC NGGGQ+K
Sbjct: 464 ACPGGCTNGGGQLK 477
>gi|115391081|ref|XP_001213045.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|121739525|sp|Q0CR17.1|NAR1_ASPTN RecName: Full=Cytosolic Fe-S cluster assembly factor nar1; AltName:
Full=Nuclear architecture-related protein 1
gi|114193969|gb|EAU35669.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 599
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 118/391 (30%), Positives = 180/391 (46%), Gaps = 79/391 (20%)
Query: 6 SLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL----------- 54
SLD + ++G+ + S+SPQ RASLA +G+S K+ T+ + L
Sbjct: 105 SLDPRSAQDDEGRIFVASVSPQVRASLAATYGVSE----KEATSIIHQLLSGPHGLRAGG 160
Query: 55 ----GVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLP---MLSSACPGWI 107
G + DT+ R+ L+ +E S E + SLP ++SSACPGW+
Sbjct: 161 KHGSGFTWVIDTNIMREAVLVLTADEV------SDTLASEAKDPSLPKKPIVSSACPGWV 214
Query: 108 CYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAA 167
CYAEK +ILP++S +KSPQ G +K + + LG I+H+ VMPC+DKKLEA+
Sbjct: 215 CYAEKT-HPFILPHLSKLKSPQALAGTLLKSTLSKTLGVPVSRIWHLAVMPCFDKKLEAS 273
Query: 168 REDF--VFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNF------------E 213
RE+ V + + + + +VD V+TT E+L L + ++
Sbjct: 274 REELTDVTWNPADGQMFSQPQTPVRDVDCVITTRELLTLASARGISLPSILSKSSSVSFP 333
Query: 214 ALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD 273
+ + LD L + + G+SGGY H + + + + RN+D
Sbjct: 334 SFPDKALDDYLFSKRSLSAQSMMTGTSGGY----LHHVLTSFQARNPGSEIVAERGRNAD 389
Query: 274 FREVAL-EVEGKTLLKFALCYGFQNLQNIVRKVK-------------------------- 306
L E ++++ A YGF+N+QN+V K+K
Sbjct: 390 VVVYKLVSPENGSIIEAARYYGFRNIQNLVNKLKPPEMSKLSGARRNDALGGKARMQLSS 449
Query: 307 -----MRKCDYQFVEVMACPSGCLNGGGQIK 332
K DY +VEVMACP GC NGGGQI+
Sbjct: 450 RKAAAKTKFDYAYVEVMACPGGCTNGGGQIR 480
>gi|218260394|ref|ZP_03475733.1| hypothetical protein PRABACTJOHN_01396 [Parabacteroides johnsonii
DSM 18315]
gi|218224548|gb|EEC97198.1| hypothetical protein PRABACTJOHN_01396 [Parabacteroides johnsonii
DSM 18315]
Length = 596
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 188/376 (50%), Gaps = 28/376 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI +P R +L FG P V K+ + L+ LG +FDT + DLT++E E
Sbjct: 228 KIVIAQTAPAVRTALGRDFGYEPGTLVTGKMVSALRGLGFDYVFDTDFAADLTIMEEGTE 287
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R + + D E +P+++S CPGW+ + E+ +L +S+ KSPQQ GA
Sbjct: 288 LLQRIGKYLKGDQE---VKMPLMTSCCPGWVSFVEQHFPE-LLDNLSTAKSPQQMFGAIA 343
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +KLG +I V++MPC KK EA+R +F + P+VD +
Sbjct: 344 KSYFAEKLGVDRKQIVVVSIMPCLAKKYEASRPEFAVDGN-------------PDVDISI 390
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
T E+ LI+ +NF L +S D+ L G ++ G++GG E R A + L+
Sbjct: 391 YTRELARLIRYANINFAELPDSNFDRPLGESTGAGVIF---GTTGGVIEAACRTAYE-LY 446
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
K ++F+ +R + R ++ +G T +K + +G N + ++ VK Y +
Sbjct: 447 TKKALPKIDFEELRGLEGIRSATIDFDG-TPIKIGIAHGLGNARKLIEDVKNGTSPYHAI 505
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV--MLADPFKNPLVRSLYDEWL 373
EVMACP GC+ GGGQ P + L K +Y E+ L +NP +++LY +L
Sbjct: 506 EVMACPGGCIGGGGQ--PFHRGRMEVLRKRAAALYQEDRSKTLRKSHENPYIQALYANYL 563
Query: 374 EQPGSEKAKKHVHTEY 389
+P +A + +HT Y
Sbjct: 564 GEPCGPRAHELLHTHY 579
>gi|326484607|gb|EGE08617.1| LET1 [Trichophyton equinum CBS 127.97]
Length = 597
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 120/384 (31%), Positives = 182/384 (47%), Gaps = 79/384 (20%)
Query: 17 GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSL-----------GVKSIFDTSCS 65
GK + S+SPQ RASLA +GIS + FL G + DT+
Sbjct: 105 GKIFVASVSPQVRASLASTYGISERNAGYMIEQFLSGPNGLRAGGQHGSGFTWVVDTNIM 164
Query: 66 RDLTLIEACNEFIARYKQSQE--SDDERSNSSLP---MLSSACPGWICYAEKQLGSYILP 120
R L + E + DE S+P +L+S+CPGWICYAEK ++LP
Sbjct: 165 RQAVLELSTAEVAESLNAAAPLTPHDESGKFSIPNRPILASSCPGWICYAEKTH-PHVLP 223
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
++S +KSPQ G +K I +KL P +I+H+ VMPC+DKKLEA+R++ +
Sbjct: 224 HLSRLKSPQALTGTFLKTIISKKLNTPPSQIWHLAVMPCFDKKLEASRQELT------DV 277
Query: 181 TYRDEGLE-----IPEVDSVLTTGEVLDLIQLKAVNFEALE--------ESPL-DKMLT- 225
++R E L+ + +VD V+T+ E+L L + ++ +L ++P D+ +
Sbjct: 278 SWRGEALDKASSPVRDVDCVITSKELLMLASSRNISLPSLPLEPLPTHLQTPFPDQTIAQ 337
Query: 226 --NVDDEGHLY--GVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-E 280
+ + H AG SGGY H T K + ++ + RN+D E L
Sbjct: 338 FLSTSNTLHFTQPAAAGPSGGY----LHHLLTTYQSKHADSIIQSQRGRNADVVEYTLVS 393
Query: 281 VEGKTLLKFALCYGFQNLQNIVRKVKMRK------------------------------- 309
G+ ++K A YGF+N+QN+VRK+K +
Sbjct: 394 AAGEPIIKAARYYGFRNIQNLVRKLKPARASRLPGSRANGPGARARPAPVSNGKPGAPIP 453
Query: 310 -CDYQFVEVMACPSGCLNGGGQIK 332
++ +VEVMACP GC NGGGQI+
Sbjct: 454 PAEFAYVEVMACPGGCTNGGGQIR 477
>gi|313227872|emb|CBY23021.1| unnamed protein product [Oikopleura dioica]
Length = 451
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 129/405 (31%), Positives = 214/405 (52%), Gaps = 56/405 (13%)
Query: 6 SLDEFLSNINKGKA-VIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSC 64
SLDEF S + K + V+++LSPQSR+SLA+ F + K L + L +L + S
Sbjct: 89 SLDEFYSVLQKKSSKVVVTLSPQSRSSLAQRFRHTG---SKNLYSPLGALPMLHKLGVSK 145
Query: 65 SRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
+RDLT F+ E +R++S L + K Y P +S
Sbjct: 146 TRDLT------PFLP------EQSGQRASSLLGL-----SRIRLLRRKNARRYACP--AS 186
Query: 125 VKSPQQTIGAT--IKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
++SP+ + IK ++C + +IYHVTVMPC+DKKLEAAR++ FQ++S
Sbjct: 187 LESPKSSGKDEKWIKLNLCTE----NKDIYHVTVMPCFDKKLEAARQE--FQIESN---- 236
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGH----LYG-VA 237
G + +VD VL T E+ L+ + L + L+ + + E + +Y
Sbjct: 237 ---GRIVKDVDCVLATTEIEKLLT------DNLGDDELESVAAAFEHEDNSSDFVYSHRG 287
Query: 238 GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCYGFQ 296
G SGGY + V++ A+++LFG+ L F +RN+ DF E LE++G+ L+FA YGF+
Sbjct: 288 GGSGGYLDYVYQSASESLFGRKPSEELRFTRVRNNKDFLETTLEIDGEVKLRFAKAYGFR 347
Query: 297 NLQNIVRKVKMRKCD-YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM 355
++QN+V ++K ++ + Y ++EVMACPSGCLNGG QI+ +E+ +++ T ++
Sbjct: 348 SIQNLVTRLKTKRGNAYDYIEVMACPSGCLNGGAQIR----YDDREMNESILTRMTDDYN 403
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQL 400
+ ++ PL ++ Q + K+ ++T + + K T L
Sbjct: 404 ALESYR-PLTCEKFESLFTQLKRDIDKQSLYTSFRAIQKEETNAL 447
>gi|291561268|emb|CBL40067.1| hydrogenases, Fe-only [butyrate-producing bacterium SS3/4]
Length = 577
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 119/388 (30%), Positives = 188/388 (48%), Gaps = 45/388 (11%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
NK K V+ ++P RA+ E G++ K+ LK +GV FDT S DLT++E
Sbjct: 218 NKDKIVVAQVAPAVRAAWGEELGLTDEDAPVGKIFDALKRMGVNYAFDTVFSADLTIMEE 277
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
EFI R+ + ER PM +S CPGW+ + + Q Y++ Y+S+ KSPQQ G
Sbjct: 278 STEFIKRFTSGELK--ER-----PMFTSCCPGWVRFVKTQF-PYMVNYLSTAKSPQQMFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A +K + +KLG PD+I+ +++MPC KK E + F + +VD
Sbjct: 330 AVMKTYFAEKLGVSPDQIFALSIMPCVAKKGEREMDLFYGEYAGH------------DVD 377
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+VLTT E++ +I+ + + L E P D + G ++ G++GG E R A
Sbjct: 378 AVLTTRELVKMIRSAHIRPDTLVEIPGDSPMHAGTGAGVIF---GATGGVMEAALRTAYF 434
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVE-----GKTLLKFALCYGFQNLQNIVRKVKMR 308
L G+ FK +R+ F+E A E G L A G N + ++++++
Sbjct: 435 ALKGENPPAD-AFKAVRSGGFQENAGVQEAEFANGDIKLHTAAVSGLGNTRRLLQQIERG 493
Query: 309 KCDYQFVEVMACPSGC-------LNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK 361
+ Y FVEVMACP GC ++ G ++ G+ L + Y +
Sbjct: 494 EVHYDFVEVMACPGGCVGGGGQPIHDGEELAFARGRKLYALDAKADIRY--------SHE 545
Query: 362 NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
NP +R +Y ++ +P S KA +HTE+
Sbjct: 546 NPDIREIYSDFFGKPMSHKAHMLLHTEH 573
>gi|358062457|ref|ZP_09149102.1| hypothetical protein HMPREF9473_01164, partial [Clostridium
hathewayi WAL-18680]
gi|356699359|gb|EHI60874.1| hypothetical protein HMPREF9473_01164, partial [Clostridium
hathewayi WAL-18680]
Length = 519
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 114/390 (29%), Positives = 189/390 (48%), Gaps = 40/390 (10%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+ K VI+ ++P RA+L E FG+ V K+ + L LG +FDT + DLT++E
Sbjct: 145 DPAKRVIVQVAPAVRAALGEEFGLPCGTPVTGKMASALHELGFDDVFDTLFAADLTIMEE 204
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
E + R + + + LPM++S PGWI + E Q L ++SS KSP +G
Sbjct: 205 GTELLGRLDAALKG----GKAVLPMITSCSPGWIKHVEHQFPEQ-LDHLSSCKSPHTMMG 259
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A +K + +K+ P +I+ V+VMPC KK E R + Q++ P+VD
Sbjct: 260 AVLKSYYAEKIDVSPKDIFVVSVMPCTAKKYEIQRPE--MQVNGN-----------PDVD 306
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+VLTT E+ +I+ ++F L E D L ++GV +GG E R +
Sbjct: 307 AVLTTRELARMIKSAGIDFVNLPEGQFDAPLGFSTGAADIFGV---TGGVMEAALRTVYE 363
Query: 254 TLFGKVI--EGHLEFKTIRNSDFREVALEVEGKTLLKF----------ALCYGFQNLQNI 301
+ G+ + EG + + ++ +E KTL F A+ G + +
Sbjct: 364 LVTGEELPFEGLHVTPIVGLEQIKTASITIE-KTLPAFEHLKGVTVNVAVTSGLEGASIL 422
Query: 302 VRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLADP 359
+++++ Y F+EVM CP GC++GGGQ + + K + +Y E+ L
Sbjct: 423 MKEIENGTSPYHFIEVMGCPGGCVSGGGQPRTTEENFRQ---KRSQALYSEDERKTLRKS 479
Query: 360 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+NP ++ LY E+L +P +A + +HT Y
Sbjct: 480 HENPDLQQLYQEYLGEPNGHRAHELLHTHY 509
>gi|167745819|ref|ZP_02417946.1| hypothetical protein ANACAC_00513 [Anaerostipes caccae DSM 14662]
gi|167654850|gb|EDR98979.1| rubredoxin [Anaerostipes caccae DSM 14662]
Length = 650
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 197/385 (51%), Gaps = 38/385 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI+S SP RA+L E FG + V K+ L++LG + DT+ S DLT++E +E
Sbjct: 91 KIVIVSTSPSVRAALGEEFGTEEGMFVQGKMVALLRALGADYVLDTNFSADLTIMEEASE 150
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
I R + LP +S CP W+ +AE +L +IS+ KSP G TI
Sbjct: 151 LIERIT--------KGTKPLPQFTSCCPAWVKFAEIYYPE-LLDHISTAKSPIGMQGPTI 201
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGL-----EIPE 191
K + + +G P++I +V + PC KK E RE+ +D G+ ++ +
Sbjct: 202 KTYFAKLMGIDPEKIVNVALTPCTAKKFEIRREEM-----------KDAGISYGKEDMRD 250
Query: 192 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHA 251
+D V+TT E + ++F LE+S DK + G ++G +SGG E R A
Sbjct: 251 MDYVITTREAALWANEEKIDFMGLEDSDFDKFMGEGSGAGVIFG---NSGGVMEAALRTA 307
Query: 252 AKTLFG-KVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK 309
+ + K + + K +R + +E +L++ G + A+ YG N + ++ KVK
Sbjct: 308 YEFITKEKAPDILYDLKPVRGMEGVKEASLDI-GDLTVNVAVVYGTGNARKMIDKVKSSD 366
Query: 310 CDYQFVEVMACPSGCLNGGGQIKPK--PGQSPKELIKTLETIYLEN--VMLADPFKNPLV 365
Y F+EVM CP GC+ GGGQ K K GQ +E K +E++Y + + + +N +
Sbjct: 367 KQYHFIEVMTCPGGCIGGGGQPKDKEFKGQIIQE--KRIESLYRRDSGMQIRASHENKQI 424
Query: 366 RSLYDEWLEQPGSEKAKKHVHTEYH 390
+ LY+E+ +P SE A++ +HT YH
Sbjct: 425 KKLYEEFYGEPLSELAEQMLHTMYH 449
>gi|134115152|ref|XP_773874.1| hypothetical protein CNBH3260 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818340|sp|P0CP11.1|NAR1_CRYNB RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|50256502|gb|EAL19227.1| hypothetical protein CNBH3260 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 650
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 172/320 (53%), Gaps = 56/320 (17%)
Query: 12 SNINKGKAVIISLSPQSRASLAEHFGIS------PLQVF-KKLTTFLKSL--GVKSIFDT 62
S +K + I+S+SPQ+ ASL+ + + PL V +++ FL G ++DT
Sbjct: 119 SPCHKPRLPILSISPQTLASLSAAYATASSRPPIPLLVLLRRIRAFLSQPEKGSWRVWDT 178
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
+ +R ++L E+ EF R ++ ++ + +PML+SACPGW+CYAEK G +LP +
Sbjct: 179 TFARHMSLRESVVEFHER----KDKKEKGKAAEMPMLASACPGWVCYAEKAQGD-MLPLL 233
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
S+ +S Q IGA K KL +PDEIYHVT MPCYDKKLEA+R DF L S
Sbjct: 234 SAARSSQGIIGALAKSWYGHKLQHKPDEIYHVTAMPCYDKKLEASRSDFYSSLYSTR--- 290
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFE--------------ALEESPLDKMLTNVD 228
+VD VLTTGE LDL+ L+ + F+ A E+SP ++LT+
Sbjct: 291 --------DVDCVLTTGE-LDLL-LQELGFDPHVPIANESTPSYSATEDSPFPELLTH-- 338
Query: 229 DEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALE--VEGKT 285
EG SSG Y +T+ ++ + + IR S D E ++ + G+
Sbjct: 339 -EG------SSSGSYLQTIIHDVQRSHPNPT---RIITREIRGSTDNIEYLIQDTITGQV 388
Query: 286 LLKFALCYGFQNLQNIVRKV 305
+ K A YGF+NLQN+VRKV
Sbjct: 389 VFKGAKVYGFRNLQNLVRKV 408
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 314 FVEVMACPSGCLNGGGQIKPK-PGQSPKELIKTLETIY 350
FVEVMACP GC+NGGGQ+KP P S E ++ E Y
Sbjct: 474 FVEVMACPGGCVNGGGQMKPTVPTPSAPEAMEVDEEGY 511
>gi|346224264|ref|ZP_08845406.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Anaerophaga thermohalophila DSM 12881]
Length = 596
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 126/405 (31%), Positives = 204/405 (50%), Gaps = 39/405 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
+ EK ++E I + K V++ +P R +L E + P ++ K+ L+ +G S
Sbjct: 209 LTEKTYINEVWDAIYDPDKFVVVQTAPAVRIALGEALDMEPGEIVTGKMVAALRRIGFNS 268
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+ DT S DLT+IE NE + R K + + D+ N LPM +S PGWI + E +
Sbjct: 269 VLDTDFSADLTIIEEGNELLQRLKMALK--DKDPNVKLPMTTSCSPGWIKFIEHTFPDF- 325
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L ++S+ KSPQQ GA K +K+G P ++ V+VMPC KK EA R + +
Sbjct: 326 LEHVSTAKSPQQMFGALAKTFYAKKIGVDPAKMVSVSVMPCTAKKFEANRPEM------R 379
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
Y+D VD V+TT E+ +++ ++F +L + D ++ G ++ G
Sbjct: 380 ASGYQD-------VDYVVTTRELALMVKQAGIDFSSLPDDDYDSIMGESSGAGVIF---G 429
Query: 239 SSGGYAETVFRHAAKTLFGKVI--EGHLEFKTIRN-SDFREVALEVEGK---------TL 286
++GG E R + + G+ + EG L +R + RE ++++E
Sbjct: 430 ATGGVMEAALRTVYEVVTGREVPFEG-LNIMPVRGMENVREASVKIENPLPEWDFLDGVE 488
Query: 287 LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL 346
+K + +G N + ++ V+ K DY F+E+MACP GCL GGGQ P SP+ K
Sbjct: 489 VKTCVAHGLSNAKKVMESVRDGKADYHFIEIMACPGGCLGGGGQPLP---TSPEIRQKRA 545
Query: 347 ETIYLENV--MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
E IY E+ + +NP + LYDE+L +P K+ + +HT Y
Sbjct: 546 EAIYREDAGKKIRKSHENPEIIQLYDEFLIEPLGHKSHELLHTTY 590
>gi|365174572|ref|ZP_09362014.1| hydrogenase, Fe-only [Synergistes sp. 3_1_syn1]
gi|363614589|gb|EHL66076.1| hydrogenase, Fe-only [Synergistes sp. 3_1_syn1]
Length = 565
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 114/371 (30%), Positives = 178/371 (47%), Gaps = 42/371 (11%)
Query: 20 VIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
V + ++P R +L + GI + K+ L+ +G +FDTS DLT++E +EF+
Sbjct: 226 VSVQIAPAVRVALGKELGIGDGENAMGKIVAALRRMGFNEVFDTSTGADLTVLEESSEFL 285
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
AR + + +P+ +S CP W+ YAEK ++ +S+ +SP Q A IK
Sbjct: 286 ARLDEGEH--------EMPLFTSCCPAWVKYAEKN-DPDVVSNLSTCRSPMQMFAAVIKE 336
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
H P + HV VMPC KK EAARE+F + P+VD VLTT
Sbjct: 337 H----HKHSPRKQIHVAVMPCTAKKAEAAREEFRTEAG-------------PDVDFVLTT 379
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E++ +I+ + F LE +D + G ++GV +GG E V R
Sbjct: 380 QEIIQMIKESGLVFSELEPEAVDMPFGTMSGAGVIFGV---TGGVTEAVLRRIISDKSAA 436
Query: 259 VIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVM 318
++ + FK IR +D + A G LK A+ G N ++++++ + Y FVEVM
Sbjct: 437 ALQA-IAFKGIRGADGVKEAAVKYGDRELKIAVVSGLGNAHELIKRIRNGE-HYDFVEVM 494
Query: 319 ACPSGCLNGGGQ-IKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQ 375
ACP GC+ G GQ K G++ + + +Y + M + +NPL+ +LY L+
Sbjct: 495 ACPGGCVCGAGQPFVLKEGKASRG-----KGLYSADKMSSIKRSEENPLMMALYSGLLK- 548
Query: 376 PGSEKAKKHVH 386
G HVH
Sbjct: 549 -GRVHDLLHVH 558
>gi|123420195|ref|XP_001305709.1| 64kDa iron hydrogenase [Trichomonas vaginalis G3]
gi|121887244|gb|EAX92779.1| 64kDa iron hydrogenase, putative [Trichomonas vaginalis G3]
Length = 590
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 126/398 (31%), Positives = 209/398 (52%), Gaps = 42/398 (10%)
Query: 4 KQSLDEFLSNINKGKAV-IISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFD 61
KQ+LD LSN KGK + +I ++P R +L+E FG V K+ + LK+LG ++D
Sbjct: 223 KQALD-ILSN--KGKKISVIQVAPAVRVALSEAFGYKEGSVTTGKMVSALKALGFDYVYD 279
Query: 62 TSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPY 121
T+ S DLT++E E + R K N+ PM +S CP W+ Y E+ +I P
Sbjct: 280 TNYSADLTIVEEAGELVQRLKNP--------NAVFPMFTSCCPAWVNYVEQSAPDFI-PN 330
Query: 122 ISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEET 181
+SS +SPQ + + +K+++ + L +++ + ++MPC KK E R + + D +ET
Sbjct: 331 LSSCRSPQGMLSSLVKNYLPKVLNIPVEDVLNFSIMPCTAKKDEIERPELRTK-DGHKET 389
Query: 182 YRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSG 241
D VLT E++++I+L ++F L ++P D + G ++ ++G
Sbjct: 390 -----------DMVLTVRELVEMIKLSGIDFNNLPDTPFDSIFGFGSGAGQIFA---ATG 435
Query: 242 GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-LEVEGKTLLKFALCYGFQNLQN 300
G E R A + + GK + ++ +R D +A L+++G T LK A+C+G N
Sbjct: 436 GVMEAASRTAFEAVTGKKLT-NVNIYPVRGMDGTRIAELDLDG-TKLKIAVCHGIANTAK 493
Query: 301 IVRKVKMRK---CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVML- 356
+ +++ + D +FVEVMACP GC+ GGG +PK S L L IY + +
Sbjct: 494 FLDRLRAKDPQLADLKFVEVMACPGGCVCGGGTPQPKNMMS---LDNRLAAIYNIDAKME 550
Query: 357 -ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY--HP 391
+NPL++ +Y E+L +P A + +HT Y HP
Sbjct: 551 CRKSHENPLIKGIYKEFLGEPNGHLAHELLHTHYKHHP 588
>gi|317133223|ref|YP_004092537.1| hydrogenase, Fe-only [Ethanoligenens harbinense YUAN-3]
gi|315471202|gb|ADU27806.1| hydrogenase, Fe-only [Ethanoligenens harbinense YUAN-3]
Length = 580
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 118/373 (31%), Positives = 192/373 (51%), Gaps = 32/373 (8%)
Query: 21 IISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
++ ++P RA+ E G+ Q K+L L+ +G + IFDT+ S DLT++E +EF+A
Sbjct: 224 VVQIAPAVRAAWGESLGLPREQATAKRLVAALRKIGFRYIFDTTFSADLTIMEEGSEFLA 283
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
+ + R N + PM +S CPGW+ + + Q + +S+ KSPQQ GA K +
Sbjct: 284 KLRN-------RENETFPMFTSCCPGWVRFLKSQYPDMVR-QLSTAKSPQQMFGAITKSY 335
Query: 140 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
+ L P+ I ++VMPC KK EAA D P+VD VLTT
Sbjct: 336 YAKLLDVEPERICSISVMPCLAKKQEAALPTM------------DTAGAGPDVDIVLTTR 383
Query: 200 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV 259
E+ +I+ + ++ L E D+ L G ++G ++GG E R A + GK
Sbjct: 384 EIDRMIRAEDIHPGELPEEEFDQPLGVGSGAGVIFG---ATGGVMEAALRSAYYLVTGKN 440
Query: 260 IEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVM 318
E F +R D ++E A+++ G T+ + A+ G N + +V ++ Y FVE+M
Sbjct: 441 PEPD-AFGNVRGMDGWKEAAIDIAGTTV-RVAVASGLGNARRLVEALRKGDVQYDFVEIM 498
Query: 319 ACPSGCLNGGGQIKPKPGQSPKELIKTLETIY-LENV-MLADPFKNPLVRSLYDEWLEQP 376
ACP GC GGGQ P + ++ ET+Y L+N+ L +NP + +Y ++L++P
Sbjct: 499 ACPGGCSGGGGQ--PIAEGEERAGVRA-ETLYGLDNISALRFSHENPSIVQVYRDYLDKP 555
Query: 377 GSEKAKKHVHTEY 389
S +A + +HT +
Sbjct: 556 LSHRAHELLHTAH 568
>gi|58271472|ref|XP_572892.1| iron hydrogenase [Cryptococcus neoformans var. neoformans JEC21]
gi|338818341|sp|P0CP10.1|NAR1_CRYNJ RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|57229151|gb|AAW45585.1| iron hydrogenase, putative [Cryptococcus neoformans var. neoformans
JEC21]
Length = 650
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 172/320 (53%), Gaps = 56/320 (17%)
Query: 12 SNINKGKAVIISLSPQSRASLAEHFGIS------PLQVF-KKLTTFLKSL--GVKSIFDT 62
S +K + I+S+SPQ+ ASL+ + + PL V +++ FL G ++DT
Sbjct: 119 SPCHKPRLPILSISPQTLASLSAAYATASSRPPIPLLVLLRRIRAFLSQPEKGSWRVWDT 178
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
+ +R ++L E+ EF R ++ ++ + +PML+SACPGW+CYAEK G +LP +
Sbjct: 179 TFARHMSLRESVVEFHER----KDKKEKGKAAEMPMLASACPGWVCYAEKAQGD-MLPLL 233
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
S+ +S Q IGA K KL +PDEIYHVT MPCYDKKLEA+R DF L S
Sbjct: 234 SAARSSQGIIGALAKSWYGHKLQHKPDEIYHVTAMPCYDKKLEASRSDFYSSLYSTR--- 290
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFE--------------ALEESPLDKMLTNVD 228
+VD VLTTGE LDL+ L+ + F+ A E+SP ++LT+
Sbjct: 291 --------DVDCVLTTGE-LDLL-LQELGFDPHVPIANESTPSYSATEDSPFPELLTH-- 338
Query: 229 DEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALE--VEGKT 285
EG SSG Y +T+ ++ + + IR S D E ++ + G+
Sbjct: 339 -EG------SSSGSYLQTIIHDVQRSHPNPT---RIITREIRGSTDNIEYLIQDTITGQI 388
Query: 286 LLKFALCYGFQNLQNIVRKV 305
+ K A YGF+NLQN+VRKV
Sbjct: 389 VFKGAKVYGFRNLQNLVRKV 408
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 314 FVEVMACPSGCLNGGGQIKPK-PGQSPKELIKTLETIY 350
FVEVMACP GC+NGGGQ+KP P S E ++ E Y
Sbjct: 474 FVEVMACPGGCVNGGGQMKPTVPTPSAPEAMEVDEEGY 511
>gi|320582179|gb|EFW96397.1| nuclear architecture related protein [Ogataea parapolymorpha DL-1]
Length = 507
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/380 (31%), Positives = 181/380 (47%), Gaps = 77/380 (20%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLT-TFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K ++S+S QSRASLA ++ QV K L F+ LG S+ T R + ++
Sbjct: 104 KKFVMSISHQSRASLAAALKLTIEQVDKMLIHLFVNHLGFVSVVGTGLGRVIATDTLAHD 163
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ + +++ + P+L+S CPGW+ YAEK +ILP +S+VKSPQQ G
Sbjct: 164 IV---------EGKQNGAQGPVLTSICPGWVLYAEKT-HPHILPKLSTVKSPQQITGCIF 213
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K I ++ D++YH+++MPC+DKKLEAAR + + G E P+VD V+
Sbjct: 214 KRLIGRQYSCSLDQVYHLSIMPCFDKKLEAARPE-----------HETPG-EAPDVDCVI 261
Query: 197 TTGEVLDLIQLKAVNFEAL------EESPLDKMLTNV------DDEGHLYGVAG-SSGGY 243
T E++ L+Q + +N + + + +P+ + D E G SSGGY
Sbjct: 262 TPRELIQLLQDEKINIDKIIKEVEHDATPISHIYEQYAPRDWPDAEAAWLNCEGSSSGGY 321
Query: 244 AETVFRHAAKTLFGKVIEGHLEFKTI--RNSDFREVALEVEGKTLLKFALCYGFQNLQNI 301
A H K + + E +TI RN D E+ L + L + GF+N+QN+
Sbjct: 322 ALQYLLHLQK------MHENTEIRTINGRNPDIYELRLVRGSEVLATAGVVNGFKNIQNL 375
Query: 302 VRKVK-------------------------------MRKCDYQFVEVMACPSGCLNGGGQ 330
VRK+K + KCD VEVMACP GC+NGGGQ
Sbjct: 376 VRKLKNGSTRVSGGLAARRRARMAQDAGEKQETGPEVHKCD--LVEVMACPGGCINGGGQ 433
Query: 331 IKPKPGQSPKELIKTLETIY 350
I + K+ ++ +Y
Sbjct: 434 ISGPAEVASKDWVEQTRHLY 453
>gi|332296330|ref|YP_004438253.1| hydrogenase, Fe-only [Thermodesulfobium narugense DSM 14796]
gi|332179433|gb|AEE15122.1| hydrogenase, Fe-only [Thermodesulfobium narugense DSM 14796]
Length = 590
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 202/383 (52%), Gaps = 28/383 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ +P + ++ E FG+ + K+ LK LG ++FDT+ S DLT++E E
Sbjct: 230 KHVVVQTAPSTHVTIGEAFGLPVGTDITGKMVAALKRLGFNAVFDTNWSADLTIMEEGYE 289
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
I R K + LP +S PGWI + E + +LP+ISS KSPQQ G
Sbjct: 290 LIHRIK---------NGGVLPQFTSCSPGWIKFCE-EFYPDLLPHISSCKSPQQMFGPIA 339
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +K G P++I+ V++MPC KK EAAR + + TY + +VD VL
Sbjct: 340 KTYYAEKKGINPEDIFVVSIMPCTAKKYEAARPEM-----NAAATYWNNPNITRDVDVVL 394
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
T+ E++ +I+ ++F L + P D ++ ++ G++GG E R A + +
Sbjct: 395 TSRELIRMIREAGIDFANLPDEPYDPLMGEGTGAAQIF---GATGGVMEAALRTAYEVIT 451
Query: 257 GKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-DYQF 314
GK + L+F+ +R + +E ++ + G T +K + + + ++ KV+ + DY F
Sbjct: 452 GKTLP-KLDFEDVRGMKEIKEASVNMNGLT-VKVLVAHSLGAARQLLDKVRAGELKDYHF 509
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEW 372
+E+MACP GC+ GGGQ P + + IK IY + + + +NP ++++Y E+
Sbjct: 510 IEIMACPGGCIGGGGQPIPTTVEERENRIK---GIYERDKKLKIRKSHENPEIQAIYKEF 566
Query: 373 LEQPGSEKAKKHVHTEYHPVVKS 395
L++P K+ + +HT Y P KS
Sbjct: 567 LKEPLGHKSHQLLHTHYTPRGKS 589
>gi|320039449|gb|EFW21383.1| iron hydrogenase [Coccidioides posadasii str. Silveira]
Length = 618
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/394 (30%), Positives = 185/394 (46%), Gaps = 74/394 (18%)
Query: 7 LDEFLSNINKG-----KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-------- 53
+D F + + G + + S+SPQ RAS+A +G+S + + FL
Sbjct: 96 VDGFRNGVQNGATGDARIFVASVSPQVRASMAATYGVSEKEAGYMIEQFLSGPQGLRAGG 155
Query: 54 ---LGVKSIFDTSCSRDLTLIEACNEFIA-RYKQSQESDDERSNSSLP---MLSSACPGW 106
G + DT+ RD+ L +E A R K + E + +P +LSSACPGW
Sbjct: 156 QHGSGFTWVVDTNVIRDVVLELTTDEATASRAKFDSTATSESAEFPIPRKPILSSACPGW 215
Query: 107 ICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEA 166
ICYAEK ++LP++S +KSPQ G IK + ++L P I+H+ +MPC+DKKLEA
Sbjct: 216 ICYAEK-THPHVLPHLSRLKSPQALTGTFIKTILSKRLNVPPSRIWHLAIMPCFDKKLEA 274
Query: 167 ARE---DFVFQLDSQEETYRDEGLEIP--EVDSVLTTGEVLDLIQLKAVNFEALEE---- 217
+R+ D +Q + + + ++ P +VD V+T+ E+L L + ++ L
Sbjct: 275 SRQELTDASWQT-TNHDMFASPAMDQPIRDVDCVITSRELLMLASSRNISLLNLPLTPLP 333
Query: 218 ----SPL-DKMLTNVDDEGHLYG----VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 268
+P D + HL +G SGGY H T ++ +
Sbjct: 334 SSFTTPFPDPRIAQFLFPKHLASNQSVFSGPSGGY----LHHLLTTHQALHPNSTIQAQR 389
Query: 269 IRNSDFREVAL--EVEGKTLLKFALCYGFQNLQNIVRKVKMRKC---------------- 310
RN+D + L G+ ++K A YGF+N+QN+VRK+K K
Sbjct: 390 GRNADVIDYTLVSAETGRPIIKAARYYGFRNIQNLVRKLKPAKTSRLPGARATVSRRTGT 449
Query: 311 ------------DYQFVEVMACPSGCLNGGGQIK 332
DY ++EVMACP GC NGGGQI+
Sbjct: 450 SAPHTAAGGGVSDYAYIEVMACPGGCTNGGGQIR 483
>gi|303311227|ref|XP_003065625.1| Iron only hydrogenase large subunit, C-terminal domain containing
protein [Coccidioides posadasii C735 delta SOWgp]
gi|240105287|gb|EER23480.1| Iron only hydrogenase large subunit, C-terminal domain containing
protein [Coccidioides posadasii C735 delta SOWgp]
Length = 618
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/394 (30%), Positives = 185/394 (46%), Gaps = 74/394 (18%)
Query: 7 LDEFLSNINKG-----KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-------- 53
+D F + + G + + S+SPQ RAS+A +G+S + + FL
Sbjct: 96 VDGFRNGVQNGATGDARIFVASVSPQVRASMAATYGVSEKEAGYMIEQFLSGPQGLRAGG 155
Query: 54 ---LGVKSIFDTSCSRDLTLIEACNEFIA-RYKQSQESDDERSNSSLP---MLSSACPGW 106
G + DT+ RD+ L +E A R K + E + +P +LSSACPGW
Sbjct: 156 QHGSGFTWVVDTNVIRDVVLELTTDEATASRAKFDSTATSESAEFPIPRKPILSSACPGW 215
Query: 107 ICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEA 166
ICYAEK ++LP++S +KSPQ G IK + ++L P I+H+ +MPC+DKKLEA
Sbjct: 216 ICYAEK-THPHVLPHLSRLKSPQALTGTFIKTILSKRLNVPPSRIWHLAIMPCFDKKLEA 274
Query: 167 ARE---DFVFQLDSQEETYRDEGLEIP--EVDSVLTTGEVLDLIQLKAVNFEALEE---- 217
+R+ D +Q + + + ++ P +VD V+T+ E+L L + ++ L
Sbjct: 275 SRQELTDASWQT-TNHDMFASPAMDQPIRDVDCVITSRELLMLASSRNISLLNLPLTPLP 333
Query: 218 ----SPL-DKMLTNVDDEGHLYG----VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 268
+P D + HL +G SGGY H T ++ +
Sbjct: 334 SSFTTPFPDPRIAQFLFPKHLASNQSVFSGPSGGY----LHHLLTTHQALHPNSTIQAQR 389
Query: 269 IRNSDFREVAL--EVEGKTLLKFALCYGFQNLQNIVRKVKMRKC---------------- 310
RN+D + L G+ ++K A YGF+N+QN+VRK+K K
Sbjct: 390 GRNADVIDYTLVSAETGRPIIKAARYYGFRNIQNLVRKLKPAKTSRLPGARATVSRRTGT 449
Query: 311 ------------DYQFVEVMACPSGCLNGGGQIK 332
DY ++EVMACP GC NGGGQI+
Sbjct: 450 SAPHTAAGGGVSDYAYIEVMACPGGCTNGGGQIR 483
>gi|37911261|gb|AAR04931.1| iron-hydrogenase HydA2 [Chlamydomonas reinhardtii]
Length = 505
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 127/443 (28%), Positives = 208/443 (46%), Gaps = 72/443 (16%)
Query: 4 KQSLDEFLSNINKGKAVIIS-LSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFD 61
K +L+E + G+ V+I+ ++P R ++AE FG++P V KL L++LG +FD
Sbjct: 73 KLALEELDKPKDGGRKVLIAQVAPAVRVAIAESFGLAPGAVSPGKLAAGLRALGFDQVFD 132
Query: 62 TSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY--IL 119
T + DLT++E E + R K+ E+ S+ LPM +S CPGW+ EK SY ++
Sbjct: 133 TLFAADLTIMEEGTELLHRLKEHLEAH-PHSDEPLPMFTSCCPGWVAMMEK---SYPELI 188
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE---------- 169
P++SS KSPQ +GA +K ++ +K G +I V+VMPC K+ EA RE
Sbjct: 189 PFVSSCKSPQMMMGAMVKTYLSEKQGIPAKDIVMVSVMPCVRKQGEADREWFCVSEPGVR 248
Query: 170 --DFVFQLDSQEETYRDEGLEIPEV-----DSVL-----------TTGEVLDLIQLKAVN 211
D V +++ G+ +PE+ D L TTG V++ A
Sbjct: 249 DVDHVITTAELGNIFKERGIILPELPDSDWDQPLGLGSGAGVLFGTTGGVMEAAVRTA-- 306
Query: 212 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 271
+E + + PL ++ N+ + L G+ +S A + F +++ L K
Sbjct: 307 YEIVTKEPLPRL--NLSEVRGLDGIKEAS-----VTLVPAPGSKFAELVAARLAHKVEEA 359
Query: 272 SDFREVAL--------------------EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
+ A + +G L+ A+ G N + ++ K+ +
Sbjct: 360 AAAEAAAAVEGAVKPPIAYDGGQGFSTDDGKGGLKLRVAVANGLGNAKKLIGKMVSGEAK 419
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL---ENVMLADPFKNPLVRSL 368
Y FVE+MACP+GC+ GGGQ P + K++ + + E L +N V L
Sbjct: 420 YDFVEIMACPAGCVGGGGQ----PRSTDKQITQKRQAALYDLDERNTLRRSHENEAVNQL 475
Query: 369 YDEWLEQPGSEKAKKHVHTEYHP 391
Y E+L +P S +A + +HT Y P
Sbjct: 476 YKEFLGEPLSHRAHELLHTHYVP 498
>gi|345856520|ref|ZP_08808998.1| hydrogenase family protein [Desulfosporosinus sp. OT]
gi|344330362|gb|EGW41662.1| hydrogenase family protein [Desulfosporosinus sp. OT]
Length = 580
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/399 (30%), Positives = 197/399 (49%), Gaps = 44/399 (11%)
Query: 1 MLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
+ E +D+ +N + V++ +P R +L E F + P + K+ L+ LG
Sbjct: 210 LTELDQVDKVWKALNDPNQFVVVQTAPAVRVALGEEFDLEPGTIVTGKMVGALRRLGFDR 269
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E E + R + LP+L+S CP W+ + E Q +
Sbjct: 270 VFDTDFAADLTIMEEATELVHRIQH---------GGRLPLLTSCCPAWVKFFEHQFPD-L 319
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ KSP + +G IK + + LG P I V+VMPC KK EAAR +
Sbjct: 320 LDIPSTCKSPHEMLGVLIKSYYAKTLGIDPKSITVVSVMPCVAKKYEAARPELA------ 373
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA- 237
+ E +VD V+TT E+ +I+ +++F+ L++ D L G G A
Sbjct: 374 ------QSAETADVDIVITTRELARMIREASIHFDHLKDKEFDHPL------GESTGAAI 421
Query: 238 --GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYG 294
G++GG E R A + L G+ +E +EF+ +R D +E + + G+ + A+ +G
Sbjct: 422 IFGATGGVLEAALRTAYEVLTGETLE-KVEFEALRGMDGIKEAVIPIAGRDY-RIAVIHG 479
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV 354
N + ++ K+K + +Y +E+MACP GC+ GGGQ P + L IY E+
Sbjct: 480 LGNARTVLEKIKAGESNYDVIEIMACPGGCIGGGGQ--PYHHGNMDILQARAAAIYRED- 536
Query: 355 MLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
A P + N + SLY ++L +P +KA + +HT Y
Sbjct: 537 -RAKPLRKSHENLAIVSLYKDYLGEPYGKKAHQLLHTSY 574
>gi|320591162|gb|EFX03601.1| iron-sulfur cluster assembly associated protein [Grosmannia
clavigera kw1407]
Length = 605
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 176/378 (46%), Gaps = 75/378 (19%)
Query: 21 IISLSPQSRASLAEHFG--ISPLQVFKKLTTFLKSL--------------GVKSIFDTSC 64
+ S+SPQ+RA+LA G +S Q L L G + DT+
Sbjct: 122 VASVSPQTRANLATACGPGVSAQQAGHMLDHLLSGPTGLRASSHGNGNGNGFAWVVDTNA 181
Query: 65 SRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
+R+ TL+ +E + S +L L+S+CPGWICYAEK ++L ++S
Sbjct: 182 AREATLVLGADEVAQFHPSPPTSTSSSPPKAL--LTSSCPGWICYAEKTH-PHVLGHLSR 238
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFV-FQLDSQEETYR 183
VKSPQ G +K + + LG P I+HV +MPC+DKKLEA+RE+ D ++ +
Sbjct: 239 VKSPQALTGTLLKTTLSRTLGIPPGRIWHVAIMPCFDKKLEASREELTDAAWDGSKDGHG 298
Query: 184 DEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPL----------------------D 221
G+ +VD V+T+ EVL L + + ++F +L ++PL D
Sbjct: 299 HHGVR--DVDCVITSKEVLMLAESRGIDFFSLPKTPLSPLLQDKCQPSSSRLPFPDAVLD 356
Query: 222 KMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEV 281
+ L AGSSGG V +++ + L+ RN D E A+
Sbjct: 357 RFLFPPRQRSAPTSAAGSSGGNLHFVL----QSVLAQNPGSSLQTNRGRNVDVVEYAITA 412
Query: 282 EG--KTLLKFALCYGFQNLQNIVRKVKMRK-------------------------CDYQF 314
G + L K A YGF+N+QN+VR+++ + D+ +
Sbjct: 413 PGLDEPLFKAARYYGFRNIQNLVRRLRPARPSRLPGGRPVGSAARRVPTGKAGAGLDFAY 472
Query: 315 VEVMACPSGCLNGGGQIK 332
VEVMACP GC NGGGQIK
Sbjct: 473 VEVMACPGGCTNGGGQIK 490
>gi|315042750|ref|XP_003170751.1| LET1 [Arthroderma gypseum CBS 118893]
gi|311344540|gb|EFR03743.1| LET1 [Arthroderma gypseum CBS 118893]
Length = 602
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 124/388 (31%), Positives = 177/388 (45%), Gaps = 76/388 (19%)
Query: 14 INKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-----------LGVKSIFDT 62
+ GK + S+SPQ RASLA +GIS + FL+ G + DT
Sbjct: 102 VGDGKIFVASVSPQVRASLAATYGISEKNAGYIIEQFLRGPCGLRAGGQHGSGFSWVADT 161
Query: 63 SCSRDLTL---IEACNEFIARYKQSQESDDER--SNSSLPMLSSACPGWICYAEKQLGSY 117
+ R L E +A + D+ S S P+L+S+CPGWICYAEK +
Sbjct: 162 NIMRQAVLELSTAEVTESLASSTSTTSHDESGKFSIPSRPVLASSCPGWICYAEKTH-PH 220
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+LPY+S +KSPQ G +K I +KL P I+H+ +MPC+DKKLEA+R++ S
Sbjct: 221 VLPYLSRLKSPQALTGTFLKTIISKKLNISPSCIWHLAIMPCFDKKLEASRQELTDV--S 278
Query: 178 QEETYRDEGLE-IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKML------------ 224
DEG + +VD V+T+ E+L L + ++ +L PL L
Sbjct: 279 WRGNASDEGSSPVRDVDCVITSKELLMLASSRNISLPSLPLEPLPTNLSTPFPDQTIAQF 338
Query: 225 --TNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL-EV 281
TN AG SGGY H T K + ++ + RN+D E L
Sbjct: 339 LSTNNTLHSAQPAAAGPSGGY----LHHLLTTYQSKHADSIIQSQRGRNADVVEYTLVSA 394
Query: 282 EGKTLLKFALCYGFQNLQNIVRKVKMRKC------------------------------- 310
G+ ++K A YGF+N+QN+VRK+K +
Sbjct: 395 TGEPIIKAARYYGFRNIQNLVRKLKPARASRLPGSRAMQPNPNGPGARARPAPIANGKPG 454
Query: 311 ------DYQFVEVMACPSGCLNGGGQIK 332
++ +VEVMACP GC NGGGQI+
Sbjct: 455 APAAPSEFAYVEVMACPGGCTNGGGQIR 482
>gi|423295633|ref|ZP_17273760.1| hydrogenase, Fe-only [Bacteroides ovatus CL03T12C18]
gi|392672342|gb|EIY65811.1| hydrogenase, Fe-only [Bacteroides ovatus CL03T12C18]
Length = 588
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 199/394 (50%), Gaps = 29/394 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ E+ + L ++ N K VI+ +P RA+L E FG P V K+ L+ LG
Sbjct: 213 LTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTLVTGKMVYALRELGFDY 272
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E +E + R + D + LP+L+S CP W+ + E +
Sbjct: 273 VFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSCCPAWVNFFEHHFPD-M 328
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ +SPQQ G+ K + +K+G +++ V++MPC KK E AR++F
Sbjct: 329 LDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAKKYECARDEFKVN---- 384
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
IP+VD ++T E+ LI+ + F + +SP D + G ++ G
Sbjct: 385 ---------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDNPMGESTGAGVIF---G 432
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R + G+ ++ ++ F+ +R + R + + G LK + +G N
Sbjct: 433 TTGGVMEAALRSVYEIYTGETLK-NVNFEQVRGLNGVRRATINLNGFE-LKVGIAHGLGN 490
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVM 355
++++ ++ +Y +E+MACP GC+ GGGQ P + + L +Y E N
Sbjct: 491 ARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEILYARANALYREDANKP 548
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP +++LY+++L +P EK++ +HT Y
Sbjct: 549 LRKSHENPYIKTLYEDYLGKPLGEKSETLLHTHY 582
>gi|354544881|emb|CCE41606.1| hypothetical protein CPAR2_801580 [Candida parapsilosis]
Length = 518
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 127/387 (32%), Positives = 183/387 (47%), Gaps = 81/387 (20%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFL--KSLGVKSIFDTSCSRDLTLIEA 73
K K + S+S QSRASLA + + P++ KL L +G + + TS R +LI
Sbjct: 102 KDKIFVASISQQSRASLAMAYDL-PVETIDKLLVNLLADQMGFQKVVGTSLGRKFSLI-- 158
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
NE A+Y + D + P+LSS CPGW+ YAEK Y+LP IS VKS QQ G
Sbjct: 159 -NE--AKYVMANRGKDSK-----PILSSICPGWVLYAEKT-HPYVLPMISPVKSAQQITG 209
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+K + ++YH+++MPC+DKKLE+AR + G IP+VD
Sbjct: 210 CLLKTLTADEFHVPKSQVYHLSIMPCFDKKLESARPEIF-------------GDTIPDVD 256
Query: 194 SVLTTGEVLDLIQLKAVNFEALEES-------PLDKMLTNVDDEGHLY-------GVAGS 239
VLT E++ L++ + N++ + + P++++ V + Y S
Sbjct: 257 CVLTPKELIALLEEE--NYQLVPKIEPKSLTLPIEEVYDLVAPKYWPYPRYSWTNDPGSS 314
Query: 240 SGGYAETVFRHAAKTLFGK-VIEGHLEFKTI--RNSDFREVALEVEGKTLLKFALCYGFQ 296
SGGYA R L K E K I +NSD E+ L + + + A+ GF+
Sbjct: 315 SGGYAFNYLRFFQNDLISKGYNESDFSMKVISGKNSDVFEMRLMYKEERVASAAIVNGFR 374
Query: 297 NLQNIVRKVKMR---------------------------------KCDYQFVEVMACPSG 323
N+QN+VRK+K K DY VE+MACPSG
Sbjct: 375 NIQNLVRKLKPNAKTVGRVNPLAARRRARMKEPESTSVEETADPSKVDY--VEIMACPSG 432
Query: 324 CLNGGGQIKPKPGQSPKELIKTLETIY 350
C+NGGGQIKP S K+ I + + Y
Sbjct: 433 CINGGGQIKPPNDVSEKDWIGEVLSKY 459
>gi|317470545|ref|ZP_07929933.1| iron only hydrogenase large subunit domain-containing protein
[Anaerostipes sp. 3_2_56FAA]
gi|316902060|gb|EFV23986.1| iron only hydrogenase large subunit domain-containing protein
[Anaerostipes sp. 3_2_56FAA]
Length = 650
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/385 (31%), Positives = 200/385 (51%), Gaps = 38/385 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI+S SP RA+L E FG + V K+ L++LGV + DT+ S DLT++E +E
Sbjct: 91 KIVIVSTSPSVRAALGEEFGTEEGMFVQGKMVALLRALGVDYVLDTNFSADLTIMEEASE 150
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
I R + LP +S CP W+ +AE +L +IS+ KSP G TI
Sbjct: 151 LIERIT--------KGTKPLPQFTSCCPAWVKFAEIYYPE-LLDHISTAKSPIGMQGPTI 201
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGL-----EIPE 191
K + + +G P++I +V + PC KK E RE+ +D G+ ++ +
Sbjct: 202 KTYFAKLMGIDPEKIVNVALTPCTAKKFEIRREEM-----------KDAGISYGKEDMRD 250
Query: 192 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHA 251
+D V+TT E + + ++F +LE+S D+ + G ++G +SGG E R A
Sbjct: 251 MDHVITTREAALWAKEEEIDFLSLEDSDFDQFMGEGSGAGVIFG---NSGGVMEAALRTA 307
Query: 252 AKTLFG-KVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK 309
+ + K + + K +R + +E +L++ G + A+ YG N + ++ KVK
Sbjct: 308 YEFITKEKAPDILYDLKPVRGMEGVKEASLDI-GDLTVNVAVVYGTGNARKMIDKVKSSD 366
Query: 310 CDYQFVEVMACPSGCLNGGGQIKPK--PGQSPKELIKTLETIYLEN--VMLADPFKNPLV 365
Y F+EVM CP GC+ GGGQ K K GQ +E K +E++Y + + + +N +
Sbjct: 367 KQYHFIEVMTCPGGCIGGGGQPKDKEFKGQIIQE--KRIESLYRRDSGMQIRASHENEQI 424
Query: 366 RSLYDEWLEQPGSEKAKKHVHTEYH 390
+ LY+++ +P SE A++ +HT YH
Sbjct: 425 KKLYEKFYGEPLSELAEQMLHTMYH 449
>gi|307108270|gb|EFN56510.1| hypothetical protein CHLNCDRAFT_34957 [Chlorella variabilis]
Length = 677
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 119/392 (30%), Positives = 194/392 (49%), Gaps = 40/392 (10%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
NK K +++ +P R S+ E G++P V ++ ++LG +FD+ S DLT++E
Sbjct: 262 NKQKVMVVQTAPSVRVSIGEELGLAPGTVETGQMVAAQRALGFDYVFDSDFSADLTIMEE 321
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY--ILPYISSVKSPQQT 131
E + LPM +S CP WI EK SY ++P++SS KSPQ
Sbjct: 322 GEPGWGGGGWWVECAHGHAPGPLPMFTSCCPAWINLVEK---SYPELIPHLSSCKSPQMM 378
Query: 132 IGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPE 191
+GA +KH+ +K G +P+++ V +MPC KK E R++F R+E +
Sbjct: 379 MGAVVKHYWAKKKGLKPEDVCLVGIMPCTAKKHETERKEF-----------RNENGAY-D 426
Query: 192 VDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHA 251
D V+TT E +++ K + +L+ D L L+ G++GG E R A
Sbjct: 427 CDYVITTREFGHMLRHKKIPMPSLKPEEFDNPLGEATGAAALF---GATGGVMEAAIRTA 483
Query: 252 AKTLFGKVIEGHLEFKTIRN-SDFREVALE-----------VEGKTLLKFALCYGFQNLQ 299
+ G+ + LE + +R +E L V GK ++ A+ G N +
Sbjct: 484 YEIAAGEPLP-KLEVEAVRGVKGVKEATLTLPANDTTLKAGVAGKE-IRVAVASGIGNAR 541
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLA 357
+++++++ + Y FVEVMACP GC+ GGGQ K P ++K + IY +++ L
Sbjct: 542 HLLQRIQAGEAHYDFVEVMACPGGCIGGGGQPKT---HDPDAVLKRMGAIYQVDKSLALR 598
Query: 358 DPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+NP + +Y E+L QPG E + K +HT Y
Sbjct: 599 KSHENPSIHKIYAEFLGQPGGELSHKLLHTHY 630
>gi|75499829|sp|Q46508.1|HNDD_DESFR RecName: Full=NADP-reducing hydrogenase subunit HndC; AltName:
Full=Hydrogen dehydrogenase (NADP(+))
gi|466366|gb|AAA87057.1| potential NAD-reducing hydrogenase subunit [Desulfovibrio
fructosovorans]
Length = 585
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 190/378 (50%), Gaps = 27/378 (7%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N K VI+ +P RA+L E G++P V K+ L+ LG +FDT + DLT++E
Sbjct: 226 NPDKVVIVQTAPAVRAALGEDLGVAPGTSVTGKMAAALRRLGFDHVFDTDFAADLTIMEE 285
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EF+ R + D +N LP+L+S CPGW+ + E Q +L S+ KSPQQ G
Sbjct: 286 GSEFLDRLGKHLAGD---TNVKLPILTSCCPGWVKFFEHQFPD-MLDVPSTAKSPQQMFG 341
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + LG +++ V+VMPC KK E AR +F + P+VD
Sbjct: 342 AIAKTYYADLLGIPREKLVVVSVMPCLAKKYECARPEFSVNGN-------------PDVD 388
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E+ L++ ++F L + D L ++GV +GG E R A +
Sbjct: 389 IVITTRELAKLVKRMNIDFAGLPDEDFDAPLGASTGAAPIFGV---TGGVIEAALRTAYE 445
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
G+ ++ ++F+ +R D + A G L + +G N + +++ + +
Sbjct: 446 LATGETLK-KVDFEDVRGMDGVKKAKVKVGDNELVIGVAHGLGNARELLKPCGAGE-TFH 503
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDE 371
+EVMACP GC+ GGGQ P + L K + +Y E+ L +NP + LY++
Sbjct: 504 AIEVMACPGGCIGGGGQ--PYHHGDVELLKKRTQVLYAEDAGKPLRKSHENPYIIELYEK 561
Query: 372 WLEQPGSEKAKKHVHTEY 389
+L +P SE++ + +HT Y
Sbjct: 562 FLGKPLSERSHQLLHTHY 579
>gi|210610147|ref|ZP_03288284.1| hypothetical protein CLONEX_00470 [Clostridium nexile DSM 1787]
gi|210152607|gb|EEA83613.1| hypothetical protein CLONEX_00470 [Clostridium nexile DSM 1787]
Length = 590
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/388 (30%), Positives = 193/388 (49%), Gaps = 35/388 (9%)
Query: 9 EFLSNINKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRD 67
E LS+ NK V+ ++P R + E FG+ P + + LK +G +FDT S D
Sbjct: 214 EALSDPNK--IVVTQVAPAVRTAWGEEFGLQPNEATVGMILDALKKMGADYVFDTCFSAD 271
Query: 68 LTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKS 127
LT++E EFI R+ + D PM +S CPGW+ +A+ Q +++ Y+SS KS
Sbjct: 272 LTIMEEATEFIQRFTSGELKDR-------PMFTSCCPGWVRFAKSQF-PHMVKYVSSAKS 323
Query: 128 PQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGL 187
PQQ G +K + QKLG P++I+ V++MPC KK E E F + +
Sbjct: 324 PQQMFGTVMKTYFAQKLGVSPEQIFTVSIMPCLAKKGEQEMELFHGEYAGK--------- 374
Query: 188 EIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETV 247
++D VLTT E + +I+ ++ E L+ D+ + G ++ G++GG E
Sbjct: 375 ---DIDVVLTTREFVKMIRAAHISPETLKNRESDRPMQEGTGAGVIF---GTTGGVMEAA 428
Query: 248 FRHAAKTLFGKVIEGHLEFKTIR------NSDFREVALEVEGKTLLKFALCYGFQNLQNI 301
R A L G+ F+ +R N +E +++ T ++ A+ G N + +
Sbjct: 429 LRSAYFFLKGENAAADA-FQAVRAEGFNANHGVQEAEFQIDDIT-VRTAVVSGLGNTRAL 486
Query: 302 VRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK 361
++K++ + Y FVEVMACP GC+ GGGQ + E K L + + +
Sbjct: 487 MKKIERGEVHYDFVEVMACPGGCVGGGGQPIHDGEERAFERGKRLYQLDA-DAKIRYSHD 545
Query: 362 NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
NP ++ LY+E+ +P KA +HT++
Sbjct: 546 NPDIKRLYEEYFGEPNEHKAHMLLHTDH 573
>gi|392427650|ref|YP_006468644.1| hydrogenase, Fe-only [Desulfosporosinus acidiphilus SJ4]
gi|391357613|gb|AFM43312.1| hydrogenase, Fe-only [Desulfosporosinus acidiphilus SJ4]
Length = 580
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 124/399 (31%), Positives = 197/399 (49%), Gaps = 44/399 (11%)
Query: 1 MLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
++E +D+ +N + VI+ +P R +L E FG+ P + K+ L+ LG
Sbjct: 210 LMELDQVDKVWKALNDPTRFVIVETAPAVRVALGEGFGLEPGTIVTGKMVAALRRLGFDR 269
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT D+T++E E I R K LP+L+S CP W+ + E Q +
Sbjct: 270 VFDTEFGADVTIMEEATELIHRLKH---------RGRLPILTSCCPAWVKFFEHQFPD-L 319
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ KSP + +G K + G P +I V+VMPC KK EAAR + Q
Sbjct: 320 LDIPSTCKSPHEMLGVLAKSYYADTYGLDPQKITVVSVMPCVAKKYEAARPEL-----GQ 374
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA- 237
+ P+VD V+TT E+ +I+ ++FE L + D L G G A
Sbjct: 375 DPV-------TPDVDIVITTRELSRMIREAGIHFERLNDEEFDHPL------GESTGAAV 421
Query: 238 --GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYG 294
G++GG E R A + L GK +E ++EF+++R D +E + +EG+ K A+ +G
Sbjct: 422 VFGTTGGVIEAALRTAYEWLTGKPLE-NVEFESLRGMDGIKEALVPIEGQDF-KIAVTHG 479
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV 354
N + I+ K++ + Y +E+MACP GC+ GGGQ P + + L IY E+
Sbjct: 480 LGNARTILEKIQSGEAQYDAIEIMACPGGCIGGGGQ--PYHHGNVEILKARAAAIYKED- 536
Query: 355 MLADPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ P + NP V LY ++ +P E+A + +HT +
Sbjct: 537 -RSKPRRKSHENPAVLELYKNYIGEPYGERAHELLHTSF 574
>gi|410724499|ref|ZP_11363690.1| hydrogenase, Fe-only [Clostridium sp. Maddingley MBC34-26]
gi|410602199|gb|EKQ56687.1| hydrogenase, Fe-only [Clostridium sp. Maddingley MBC34-26]
Length = 646
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 194/381 (50%), Gaps = 27/381 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISPL-QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI ++P R ++ E FG P V KKL LK LGV +FDT+ DLT++E E
Sbjct: 285 KIVITQMAPAIRVAIGEAFGFEPGDNVEKKLAAGLKKLGVNYVFDTTWGADLTIMEEAAE 344
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
R ++ D+ N LP+L+S CP WI + E+ +L SS KSP +
Sbjct: 345 LQDRLERHLAGDE---NVKLPILTSCCPSWIKFIEQNYAD-MLDVPSSAKSPMEMFAIVA 400
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K ++ G DE+ V +MPC KK EA+R +F ++ +VD V+
Sbjct: 401 KEIWAKEKGLSRDEVTSVAIMPCIAKKYEASRPEFSVDMNY-------------DVDYVI 447
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E++ + + ++ + LE+ +D ++ G ++ G +GG E R A + +
Sbjct: 448 TTRELIKIFENSGIDLKTLEDEEIDSVMGEYTGAGIIF---GRTGGVIEAAVRTALENIT 504
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G IE ++EF+ +R D FR LEV+ L+ + +G + ++ K++ + + +
Sbjct: 505 GNRIE-NIEFEQLRGWDGFRICELEVD-DIKLRIGVAHGLREAAKMLDKIRSGEEFFHAI 562
Query: 316 EVMACPSGCLNGGGQ--IKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWL 373
E+MAC GC+ GGGQ IK Q ++ + L I V L +NP V ++YD++L
Sbjct: 563 EIMACIGGCIGGGGQPKIKKNKQQVLEQRAEGLNNIDRSKV-LRRSNENPEVLAIYDKYL 621
Query: 374 EQPGSEKAKKHVHTEYHPVVK 394
+ P S KA + +HT Y P +K
Sbjct: 622 DHPLSNKAHELLHTTYFPRMK 642
>gi|145538267|ref|XP_001454839.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422616|emb|CAK87442.1| unnamed protein product [Paramecium tetraurelia]
Length = 1021
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/357 (31%), Positives = 182/357 (50%), Gaps = 61/357 (17%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIF 60
+++ QSLDEFL I K + I +SPQSRASL+ + ++ L + L VK ++
Sbjct: 688 LIQTQSLDEFLQAIKKHQNPAIGISPQSRASLSHVLNFTDSEMHSILHQLFQELNVK-LY 746
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
D S + + N I +KQ++ + P+L S CPGW+CYAEK L I+
Sbjct: 747 DMSEYMKIAI----NNSIQEFKQTKIT---------PLLCSECPGWVCYAEKTLDESIIN 793
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
++S VKSPQQ GA +K + Y T+MPCYDKKLEA R L++ E+
Sbjct: 794 HMSKVKSPQQIFGAILKK----------NHDYIATIMPCYDKKLEAVR------LENNED 837
Query: 181 TYRDEGLEIPEVDSVLTTGEV----LDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGV 236
++ VL+T E+ D IQ + +++ L M N + ++
Sbjct: 838 -----------INIVLSTREIEQYIKDYIQKSQI---TPQQTQLSTMAINFQEYHNI--- 880
Query: 237 AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLK-FALCYGF 295
SS Y + + + + K + ++ ++ +N DF E+ + E L +A +G
Sbjct: 881 --SSNNYLDYIIQSSVKPNW--TVKQNIR----KNKDFIEITIYNEDMQLQGIYARVFGL 932
Query: 296 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIK-PKPGQSPKELIKTLETIYL 351
+N+ N++ ++K + C Y++VE+MACP GCLNGGGQI K + +LI L+ I +
Sbjct: 933 KNIANLISQIKTKTCKYKYVEIMACPLGCLNGGGQILIQKNTEKANDLIPKLKDIMI 989
>gi|150020388|ref|YP_001305742.1| hydrogenase large subunit [Thermosipho melanesiensis BI429]
gi|149792909|gb|ABR30357.1| hydrogenase large subunit domain protein [Thermosipho melanesiensis
BI429]
Length = 653
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 185/376 (49%), Gaps = 45/376 (11%)
Query: 18 KAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI ++P RAS+ E G+ + ++ FLK +G K +FD S + DL E +E
Sbjct: 218 KFVIGMIAPAVRASIQEELGLDGDVVTAGRIVNFLKMIGFKKVFDVSFAADLVAYEEAHE 277
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F R ++ ++ LP +S CPGW+ +AE +L +SSVKSPQQ +G+ I
Sbjct: 278 FKERLERGEK---------LPQFTSCCPGWVKFAEHNYPE-LLDNLSSVKSPQQALGSVI 327
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K +++G P +I+ V++MPC KK EA RE+F EVD V+
Sbjct: 328 KRIYAKEMGIDPKDIFLVSIMPCTAKKFEAEREEFA-----------------GEVDVVI 370
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGV---AGSSGGYAETVFRHAAK 253
TT E+ +I+ + +++ P D+ YG+ AG S G VF K
Sbjct: 371 TTKELSQIIRSSGFDLKSIPPIPFDRP----------YGLSSQAGLSFGKTGGVFSSVLK 420
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
L ++ ++E K + A +GKT + + +G N++ ++ K+ D
Sbjct: 421 VLNDEIGLENVETKEVEKGIRITNATTKDGKT-INGVVVFGLGNVRKVMEKLNDWNVD-- 477
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWL 373
VEVMAC GC+ GGGQ P + + K L + +V+++ P +N + SLY+ L
Sbjct: 478 IVEVMACDYGCIGGGGQPYPNDTEIRIKRAKILNEVVGIDVLIS-PTENYHMLSLYENHL 536
Query: 374 EQPGSEKAKKHVHTEY 389
+ P S ++ K +HT Y
Sbjct: 537 KAPLSHESHKLLHTTY 552
>gi|449131334|ref|ZP_21767550.1| hydrogenase, Fe-only [Treponema denticola SP37]
gi|448940167|gb|EMB21078.1| hydrogenase, Fe-only [Treponema denticola SP37]
Length = 596
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 116/398 (29%), Positives = 199/398 (50%), Gaps = 37/398 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKS 58
+ E+ ++F + + K V++ ++P R + EH G+ K+ LK +G
Sbjct: 203 LRERDDTEKFWRAVADPDKVVVVQVAPAIRTAWGEHLGLDLKDASVNKIFDALKRMGADY 262
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDTS S DLT++E EF+ R+ + + D PM +S CPGW+ + + Q ++
Sbjct: 263 VFDTSFSADLTIMEEAYEFLERFSKGELKDK-------PMFTSCCPGWVRFIKSQY-PHL 314
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+ ++SS KSP Q GA +K + + +G RP++I+ V +MPC KK E + E F +
Sbjct: 315 VSHLSSAKSPMQMFGAVMKSYFAESIGKRPEDIFSVAIMPCVAKKGEISMELFYGEYAGH 374
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
++D VLTT E + +I+ + + L+E+ DK+ + G ++ G
Sbjct: 375 ------------DMDCVLTTREFVRMIKSAHILPQTLKETEPDKLFHDASGAGIIF---G 419
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTL----LKFALCYG 294
++GG E R A + G+ FK +R+S E + TL L A+ G
Sbjct: 420 ATGGVMEAALRTAYYAIMGENCPPD-AFKVVRHSSQEETGIIEASFTLKENNLSVAVASG 478
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYL-- 351
N + ++ ++ + Y FVE+MACP GC+ GGGQ P EL + + +Y
Sbjct: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQ----PIHDGFELAFERGQNLYFID 534
Query: 352 ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
N+ L +N +++LY+ + E+P S KA +HT++
Sbjct: 535 SNLKLRYSHENEDIKNLYNNFFEKPNSHKAHSLLHTDH 572
>gi|374813428|ref|ZP_09717165.1| iron hydrogenase 1 [Treponema primitia ZAS-1]
gi|342308723|gb|AEL20834.1| HydA1 [Treponema primitia ZAS-1]
Length = 454
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 180/375 (48%), Gaps = 35/375 (9%)
Query: 21 IISLSPQSRASLAEHFGISPLQVFK--KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
I+ +P R +AE FG+ PL K+ L+ LG K ++DT+ S DLT++E E +
Sbjct: 106 IVQAAPAVRVGIAEDFGL-PLGSLASGKMAAGLRRLGFKKVYDTNFSADLTIMEEGTELV 164
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R + LPM +S CPGW+ Y E + ++SS KSPQQ GA K
Sbjct: 165 KRVTE---------KGVLPMFTSCCPGWVRYME-NTHPELTKHLSSCKSPQQMAGAVFKT 214
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ + ++Y+V+VMPC K EAARE+ ++D +D V+TT
Sbjct: 215 YGAKLDAVEGAKVYNVSVMPCTCKTFEAAREEM------NSSGWQD-------IDVVITT 261
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ L++ K ++ + + D L G ++GV +GG E R + GK
Sbjct: 262 RELGYLLKYKGIDLATMPDEEFDMPLGEYTGAGAIFGV---TGGVMEAAIRTGYTLITGK 318
Query: 259 VIEGHLEFKTIR-NSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
++ ++ +R N FR ++ G LK + +N+ ++ +++ D FVEV
Sbjct: 319 ELK-DVDINAVRGNEGFRRAEIKA-GDLTLKVGVVTNLKNIDPVIEQLQAGTLDAHFVEV 376
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKT-LETIYLENVMLA--DPFKNPLVRSLYDEWLE 374
M CP GC++GGGQ K E ++ + Y + L ++ ++ +Y E+LE
Sbjct: 377 MTCPEGCISGGGQPKLLSDTDTAEAYQSRRKATYDHDKALPKRKSHESGAIKKIYAEFLE 436
Query: 375 QPGSEKAKKHVHTEY 389
+P K+ + +HT Y
Sbjct: 437 KPNGHKSHELLHTSY 451
>gi|345856533|ref|ZP_08809011.1| hydrogenase family protein [Desulfosporosinus sp. OT]
gi|344330375|gb|EGW41675.1| hydrogenase family protein [Desulfosporosinus sp. OT]
Length = 580
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 116/396 (29%), Positives = 196/396 (49%), Gaps = 38/396 (9%)
Query: 1 MLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
+ E +D+ +N + V++ +P R +L E F + P + K+ L+ LG
Sbjct: 210 LTELDQVDKVWKALNDPNQFVVVQTAPAVRVALGEEFDLEPGTIVTGKMVAALRRLGFDR 269
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E E + R K LP+L+S CP W+ + E Q +
Sbjct: 270 VFDTDFAADLTIMEEATELVHRIKH---------GGRLPLLTSCCPAWVKFFEHQFPD-L 319
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ KSP + +G K + + LG P I V+VMPC KK EAAR +
Sbjct: 320 LDIPSTCKSPHEMLGVLTKSYYAKTLGIDPKTITVVSVMPCVAKKYEAARPELA------ 373
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+G E +VD V+TT E+ +I+ +++F+ L++ D L ++G
Sbjct: 374 ------QGAETADVDIVITTRELARMIREASIHFDHLKDQEFDHPLGESTGAAVIFG--- 424
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
++GG E R A + L G+ +E +EF+ +R D +E + + G+ + A+ +G N
Sbjct: 425 ATGGVLEAALRTAYEVLTGETLE-KVEFEALRGMDGIKEAVIPIAGRDY-RIAVIHGLGN 482
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLA 357
+ ++ K++ + +Y +E+MACP GC+ GGGQ P + + L IY E+ A
Sbjct: 483 ARTVLEKIQAGESNYDVIEIMACPGGCIGGGGQ--PYHHGNMEILKARASAIYRED--RA 538
Query: 358 DPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
P + N + LY ++L +P +KA + +HT Y
Sbjct: 539 KPLRKSHENLAIIGLYKDFLGEPYGKKAHQLLHTSY 574
>gi|119194505|ref|XP_001247856.1| hypothetical protein CIMG_01627 [Coccidioides immitis RS]
gi|121927206|sp|Q1E736.1|NAR1_COCIM RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|392862908|gb|EAS36410.2| cytosolic Fe-S cluster assembly factor NAR1 [Coccidioides immitis
RS]
Length = 618
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 120/394 (30%), Positives = 185/394 (46%), Gaps = 74/394 (18%)
Query: 7 LDEFLSNINKG-----KAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-------- 53
+D F + + G + + S+SPQ RAS+A +G+S + + FL
Sbjct: 96 VDGFRNGVQNGATGDARIFVASVSPQVRASMAATYGVSEKEAGYMIEQFLSGPQGLRAGG 155
Query: 54 ---LGVKSIFDTSCSRDLTLIEACNEFIA-RYKQSQESDDERSNSSLP---MLSSACPGW 106
G + DT+ RD+ L +E A R K + E + +P +LSSACPGW
Sbjct: 156 QHGSGFTWVVDTNVIRDVVLELTTDEVTASRAKFDSTATSESAEFPIPRQPILSSACPGW 215
Query: 107 ICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEA 166
ICYAEK ++LP++S +KSPQ G IK + ++L P I+H+ +MPC+DKKLEA
Sbjct: 216 ICYAEKT-HPHVLPHLSRLKSPQALTGTFIKTILSKRLNVPPSRIWHLAIMPCFDKKLEA 274
Query: 167 ARE---DFVFQLDSQEETYRDEGLEIP--EVDSVLTTGEVLDLIQLKAVNFEALEESPLD 221
+R+ D +Q + + + ++ P +VD V+T+ E+L L + ++ L +PL
Sbjct: 275 SRQELTDASWQT-TNHDIFASPAMDQPIRDVDCVITSRELLMLASSRNISLLTLPLTPLP 333
Query: 222 KMLTNVDDEGHLYGV-------------AGSSGGYAETVFRHAAKTLFGKVIEGHLEFKT 268
T + + +G SGGY H T ++ +
Sbjct: 334 SSFTTPFPDPRIAQFLFPKHHASNQSVSSGPSGGY----LHHLLTTHQALHPNSTIQAQR 389
Query: 269 IRNSDFREVAL--EVEGKTLLKFALCYGFQNLQNIVRKVKMRKC---------------- 310
RN+D + L G+ ++K A YGF+N+QN+VRK+K K
Sbjct: 390 GRNADVIDYTLVSAETGRPIIKAARYYGFRNIQNLVRKLKPAKTSRLPGARAAVSRRTGI 449
Query: 311 ------------DYQFVEVMACPSGCLNGGGQIK 332
DY ++EVMACP GC NGGGQI+
Sbjct: 450 SASHTAAGGGVSDYAYIEVMACPGGCTNGGGQIR 483
>gi|209170690|gb|ACI42788.1| [FeFe]-hydrogenase [Clostridium tyrobutyricum]
Length = 577
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 183/383 (47%), Gaps = 44/383 (11%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI++++P R ++ E F + V KL T L+ L IFD + D+T++E E
Sbjct: 221 KHVIVAMAPSIRTAIGELFKMGFGKDVTGKLYTALRMLNFDKIFDINFGADMTIMEEATE 280
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY---ILPYISSVKSPQQTIG 133
+ R K + PM +S CP W+ +Q +Y +L +SS KSPQQ G
Sbjct: 281 LLERIK---------NGGPFPMFTSCCPAWV----RQAQNYYPELLKNLSSAKSPQQIFG 327
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
K + G ++Y VTVMPC DKK EA L E G+ +D
Sbjct: 328 TATKTYYPAISGIEAKDVYTVTVMPCNDKKYEA-------DLPEMEVN----GMRC--ID 374
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+V+TT E+ +I+ + F +LE+ D + G ++G ++GG E R A
Sbjct: 375 AVITTRELAKMIKDAKIKFTSLEDGKADPAMGEYSGAGAIFG---TTGGVMEAALRTAKD 431
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
K ++ ++++ +R + +E +E+ GK+ A+ G NL ++ KM++ Y
Sbjct: 432 FSENKELK-NIDYTEVRGFNGIKEATVELSGKSY-NVAVINGAANLFKFMKSDKMKEKQY 489
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELI--KTLETIYL----ENVMLADPFKNPLVR 366
F+EVMACP GC+NGGGQ P +EL+ K L L +N+ +NP +
Sbjct: 490 HFIEVMACPGGCINGGGQ--PHINAMDRELVDYKVLRASVLYNQDKNLPRRKSHENPAIL 547
Query: 367 SLYDEWLEQPGSEKAKKHVHTEY 389
++Y + PG A K +H Y
Sbjct: 548 NMYGSYFGNPGQGLAHKLLHHNY 570
>gi|392423711|ref|YP_006464705.1| hydrogenase, Fe-only [Desulfosporosinus acidiphilus SJ4]
gi|391353674|gb|AFM39373.1| hydrogenase, Fe-only [Desulfosporosinus acidiphilus SJ4]
Length = 580
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 198/398 (49%), Gaps = 38/398 (9%)
Query: 1 MLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKS 58
+ E +D+ +N + V++ +P R +L E FG+ S V K+ L+ LG
Sbjct: 210 LTEVDQVDKVWKALNDPNQFVVVQTAPAVRVALGEEFGLESGTVVTGKMVASLRRLGFDR 269
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E +E + R K LP+L+S CP W+ + E Q +
Sbjct: 270 VFDTDFAADLTIMEEASELVHRIKH---------GGRLPLLTSCCPAWVKFFEHQFPD-L 319
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ KSP Q +G+ K + + LG P I V+VMPC KK EAAR + D+
Sbjct: 320 LDIPSTCKSPHQMLGSLTKSYYAKTLGIDPKSITVVSVMPCVAKKYEAARPELAQSADTA 379
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+ VD V+TT E+ +I+ +++F+ L++ D L ++G
Sbjct: 380 D------------VDIVITTRELARMIREASIHFDHLKDQEFDYPLGESTGAAVIFG--- 424
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
++GG E R A + L G+ +E +EF+ +R + +E + + G + A+ +G N
Sbjct: 425 TTGGVLEAALRTAYEMLTGETLE-KVEFEALRGMNGIKEAVIPIAGHDY-RIAVIHGLGN 482
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLA 357
++++ K++ + Y +E+MACP GC+ GGGQ P + + L IY E+ A
Sbjct: 483 ARSVLEKIRAGESTYDVIEIMACPGGCIGGGGQ--PYHHGNMEILKHRAAAIYRED--RA 538
Query: 358 DPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
P + N + +LY ++L P E+A + +HT Y P
Sbjct: 539 KPLRKSHENLAIVALYKDYLGDPYGERAHQLLHTTYTP 576
>gi|332652330|ref|ZP_08418075.1| putative [Fe] hydrogenase, large subunit HymC [Ruminococcaceae
bacterium D16]
gi|332517476|gb|EGJ47079.1| putative [Fe] hydrogenase, large subunit HymC [Ruminococcaceae
bacterium D16]
Length = 564
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 115/376 (30%), Positives = 178/376 (47%), Gaps = 38/376 (10%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ ++P R ++ E FG+ Q V +L T LK +GV ++DT+ D T IE E
Sbjct: 223 KRVVVQIAPAVRVAVGEAFGLPAGQNVLDQLVTALKFMGVDEVYDTTFGADFTTIEESQE 282
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+AR ++ PM +S CP W+ Y E + Y L IS+ KSP + A I
Sbjct: 283 FLARLEK---------GGPFPMFTSCCPAWVKYLENENPKY-LKNISTCKSPMEMFAAII 332
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
+ H +K +H+ +MPC KK+EAAR F P+VD VL
Sbjct: 333 REHYQKKDAEDGRSTFHIAIMPCTAKKMEAARPQFYHNGK-------------PDVDVVL 379
Query: 197 TTGEVLDLIQLKAVNFEALE-ESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTL 255
TT E++++I+ + +E ESP D +YG SSGG AE+V R+
Sbjct: 380 TTQEIINMIKESGIQLPQMELESP-DLPFGLGSGAAVIYG---SSGGVAESVVRYCLPDK 435
Query: 256 FGKVIEGHLEFKTIR-NSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQF 314
+ L++ +R N RE ++V G+ +K A+ +G N Q +++++ Y
Sbjct: 436 SKNTLR-ELQYSPLRGNEAIREATVQV-GEREIKLAVVHGLINAQKLLKEIDAGTAYYDL 493
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLE 374
VEVM CPSGC+ G GQ P ++ +Y + A PFK + ++L
Sbjct: 494 VEVMTCPSGCVGGAGQ----PYGLKQKKQDRAAGLYAAD--RAAPFKRAEKNPVVLDFLN 547
Query: 375 QPGSEKAKKHVHTEYH 390
E+ + +HT Y
Sbjct: 548 NYTPEQRHELLHTSYQ 563
>gi|336421060|ref|ZP_08601220.1| hypothetical protein HMPREF0993_00597 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336002419|gb|EGN32528.1| hypothetical protein HMPREF0993_00597 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 576
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 193/383 (50%), Gaps = 33/383 (8%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N K VI ++P R + +E + P + K+ LK +GV FDT+ S DLT++E
Sbjct: 218 NPDKIVIAQVAPAVRTAWSEGLNLDPEEATVGKILDALKRMGVDYAFDTAFSADLTIMEE 277
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
EF+ R+ + D PM +S CPGW+ + + Q +++ Y+S+ KSPQQ G
Sbjct: 278 ATEFLKRFTSGELKD-------RPMFTSCCPGWVRFVKSQF-PHMVKYLSTAKSPQQMFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A +K + +K+G P++IY V+VMPC KK E E F + +VD
Sbjct: 330 AIMKTYFAEKIGVSPEQIYTVSVMPCVAKKDEREMELFYGEYAGH------------DVD 377
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+V+TT E++ +I+ ++ + LE+ D + G ++ G++GG E R A
Sbjct: 378 AVITTRELIKMIRSAHISPDTLEDIKSDTPMREGSGAGVIF---GTTGGVMEAALRSAYY 434
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVEG-----KTLLKFALCYGFQNLQNIVRKVKMR 308
L + + F+ +R+ F+E VE +K A+ G N + ++++++
Sbjct: 435 LLKSENPDVD-AFRVVRSPGFQENNGVVEADFTIDDITVKTAVVSGLANTRVLLKRIERE 493
Query: 309 KCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL-ENVMLADPFKNPLVRS 367
+ Y FVEVMACP GC+ GGGQ + + K L + NV + +N +
Sbjct: 494 EVHYDFVEVMACPGGCVGGGGQPIHDGEERAYDRGKNLYMLDAGANVRFS--HENRDIIR 551
Query: 368 LYDEWLEQPGSEKAKKHVHTEYH 390
+YDE+LE+P S KA +HTE+
Sbjct: 552 IYDEYLEKPNSHKAHMLLHTEHR 574
>gi|380694637|ref|ZP_09859496.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides faecis MAJ27]
Length = 588
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 114/394 (28%), Positives = 199/394 (50%), Gaps = 29/394 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ E+ + L ++ N K VI+ +P RA+L E FG+ P V K+ L+ LG
Sbjct: 213 LTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGLPPGTLVTGKMVYALRELGFDY 272
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E +E + R + + D + LP+L+S CP W+ + E +
Sbjct: 273 VFDTDFAADLTIMEEGSEILNRLTRYLDGD---KSVRLPILTSCCPAWVNFFEHHFPD-M 328
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ +SPQQ G+ K + +K+G +++ V++MPC KK E R++F
Sbjct: 329 LDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAKKYECDRDEFKVN---- 384
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
IP+VD ++T E+ LI+ + F + +SP D + G ++G
Sbjct: 385 ---------GIPDVDYSISTRELARLIKRANIGFTLVLDSPFDNPMGESTGAGVIFG--- 432
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R + G+ ++ ++ F+ +R S R + + G L K + +G N
Sbjct: 433 TTGGVMEAALRSVYEIYTGEPLK-NVNFEQVRGLSGVRRATIHLNGFEL-KVGIAHGLGN 490
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVM 355
++++ ++ + +Y +E+MACP GC+ GGGQ P + L +Y E N
Sbjct: 491 ARHLLEDIRNGQNEYHVIEIMACPGGCIGGGGQ--PLHHGNSDVLYARANALYREDANKP 548
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP ++ LY+E+L +P EK++ +HT Y
Sbjct: 549 LRKSHENPYIQKLYEEYLGKPLGEKSEMLLHTHY 582
>gi|449128681|ref|ZP_21764927.1| hydrogenase, Fe-only [Treponema denticola SP33]
gi|448941089|gb|EMB21993.1| hydrogenase, Fe-only [Treponema denticola SP33]
Length = 596
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 198/398 (49%), Gaps = 37/398 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKS 58
+ E+ ++F + + K V++ ++P R + EH G+ K+ LK +G
Sbjct: 203 LRERDDTEKFWRAVADPDKVVVVQVAPAIRTAWGEHLGLDLKDASVNKIFDALKRMGADY 262
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDTS S DLT++E EF+ R+ + + D PM +S CPGW+ + + Q ++
Sbjct: 263 VFDTSFSADLTIMEEAYEFLERFSKGELKDK-------PMFTSCCPGWVRFIKSQY-PHL 314
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+ Y+SS KSP Q GA +K + + +G +P++I+ V +MPC KK E E F +
Sbjct: 315 VSYLSSAKSPMQMFGAVMKSYFAESIGKKPEDIFSVAIMPCVAKKGEINMELFYGEYAGH 374
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
++D VLTT E + +I+ + E L+E+ DK+ + G ++ G
Sbjct: 375 ------------DMDCVLTTREFVRMIKSAHILPETLKETEPDKLFHDASGAGIIF---G 419
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTL----LKFALCYG 294
++GG E R A + G+ FK +R+S E + TL L A+ G
Sbjct: 420 ATGGVMEAALRTAYYAIMGENCPPD-AFKVVRHSSQDESGIIEASFTLKENNLSVAVTSG 478
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYL-- 351
N + ++ ++ + Y FVE+MACP GC+ GGGQ P EL + + +Y
Sbjct: 479 LANTRRLIDSIEAGEKHYDFVEIMACPGGCVGGGGQ----PIHDGFELAFERGQNLYFID 534
Query: 352 ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
N+ L +N +++LY+ + E+P S KA +HT++
Sbjct: 535 SNLKLRYSHENEDIKNLYNNFFEKPNSHKAHSLLHTDH 572
>gi|15644177|ref|NP_229226.1| Fe-hydrogenase, subunit alpha [Thermotoga maritima MSB8]
gi|403253640|ref|ZP_10919941.1| Fe-hydrogenase, subunit alpha [Thermotoga sp. EMP]
gi|418045482|ref|ZP_12683577.1| Ferredoxin hydrogenase [Thermotoga maritima MSB8]
gi|4981990|gb|AAD36496.1|AE001794_12 Fe-hydrogenase, subunit alpha [Thermotoga maritima MSB8]
gi|2865517|gb|AAC02686.1| Fe-hydrogenase alpha subunit [Thermotoga maritima MSB8]
gi|351676367|gb|EHA59520.1| Ferredoxin hydrogenase [Thermotoga maritima MSB8]
gi|402811174|gb|EJX25662.1| Fe-hydrogenase, subunit alpha [Thermotoga sp. EMP]
Length = 645
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 120/395 (30%), Positives = 194/395 (49%), Gaps = 55/395 (13%)
Query: 4 KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDT 62
+ +D+ + + K VI ++P RA++ E FGI + + +KL +FLK++G +FD
Sbjct: 204 RNDIDKLIEALESDKIVIGMIAPAVRAAIQEEFGIDEDVAMAEKLVSFLKTIGFDKVFDV 263
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
S DL E +EF R K+ + LP +S CP W+ +AE Y L +
Sbjct: 264 SFGADLVAYEEAHEFYERLKKGER---------LPQFTSCCPAWVKHAEHTYPQY-LQNL 313
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
SSVKSPQQ +G IK +KLG ++I+ V+ MPC KK EA RE+
Sbjct: 314 SSVKSPQQALGTVIKKIYARKLGVPEEKIFLVSFMPCTAKKFEAEREEH----------- 362
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSG- 241
EG+ VD VLTT E+ LI++ ++ +E P D+ YGV+ +G
Sbjct: 363 --EGI----VDIVLTTRELAQLIKMSRIDINRVEPQPFDRP----------YGVSSQAGL 406
Query: 242 --GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQ 299
G A VF L ++ ++ K+ + R + ++ T K A+ YG ++
Sbjct: 407 GFGKAGGVFSCVLSVLNEEIGIEKVDVKSPEDG-IRVAEVTLKDGTSFKGAVIYGLGKVK 465
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL-ETIYLENVMLAD 358
+ + K D + +EVMAC GC+ GGGQ P + + K L +T+ +++++
Sbjct: 466 KFLEERK----DVEIIEVMACNYGCVGGGGQPYPNDSRIREHRAKVLRDTMGIKSLLT-- 519
Query: 359 PFKNPLVRSLYDEWLEQPGSEKAKKH--VHTEYHP 391
P +N + LY+E L+ ++ +H +HT Y P
Sbjct: 520 PVENLFLMKLYEEDLK----DEHTRHEILHTTYRP 550
>gi|116748289|ref|YP_844976.1| hydrogenase, Fe-only [Syntrophobacter fumaroxidans MPOB]
gi|116697353|gb|ABK16541.1| hydrogenases, Fe-only [Syntrophobacter fumaroxidans MPOB]
Length = 576
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 186/377 (49%), Gaps = 37/377 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ +P +R + E G +P + ++ L+ LG +FDT + DLT++E NE
Sbjct: 224 KHVVVQTAPATRVQVGETMGAAPGSIVTGQMVAGLRRLGFDKVFDTDFTADLTILEEGNE 283
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R + + +LPM++S PGWI +AE +LP++S+ KSPQQ GA
Sbjct: 284 LLQRLQ---------NGGALPMITSCSPGWIKFAE-HFYPELLPHLSTCKSPQQMFGALA 333
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + QK G P +++ V+VMPC KK E R + + Y+D VD VL
Sbjct: 334 KTYYAQKAGIDPSDVFVVSVMPCTAKKFECIRPEM------RSSGYQD-------VDVVL 380
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
T+ E+ + + ++ E L D L G ++ G+SGG E R + +
Sbjct: 381 TSRELGRMFKQAGLSMENLPPEEYDAPLGISTGAGEIF---GASGGVMEAALRTVYEVVT 437
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G+ +E +EFK R D +E ++V G ++ A+ G N + ++ K++ D+ F+
Sbjct: 438 GQSLE-TIEFKECRGLDGVKEATVQV-GALPVRVAITNGLGNARKVLEKIREGSSDHHFI 495
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYLEN--VMLADPFKNPLVRSLYDEW 372
E+M C G P + KE+ + ++ +Y E+ + L NP V LY E+
Sbjct: 496 EIMC----CPGGCVGGGGSPIPTNKEIRLNRIDAVYREDERMALRKSHDNPAVAELYKEF 551
Query: 373 LEQPGSEKAKKHVHTEY 389
LE+P K+ + +HT Y
Sbjct: 552 LEKPLGHKSHQLLHTHY 568
>gi|383790940|ref|YP_005475514.1| hydrogenase, Fe-only [Spirochaeta africana DSM 8902]
gi|383107474|gb|AFG37807.1| hydrogenase, Fe-only [Spirochaeta africana DSM 8902]
Length = 594
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 123/407 (30%), Positives = 201/407 (49%), Gaps = 42/407 (10%)
Query: 1 MLEKQSLDEFLSNINKGKA-VIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKS 58
++E +D ++ + V++ +P RA+L E FG+ + +V K+ L+ L +
Sbjct: 204 IMETSHIDRVWDALDDPQLHVVVQTAPAIRAALGECFGLPAGTRVTGKMVRALRRLHFDA 263
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQS-QESDDERSNSSLPMLSSACPGWICYAEKQLGSY 117
+FDT + DLT++E E + R ++ DE LP+++S PGWI +AE+
Sbjct: 264 VFDTDFAADLTIMEEGTELLQRLTAVLRDGRDE----PLPVITSCSPGWINFAEQYF-PQ 318
Query: 118 ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
+LP +SS KSPQQ GA K + + G P ++ +VMPC KK EA R +
Sbjct: 319 LLPMVSSCKSPQQMFGALAKTYYAESRGIDPARVFVASVMPCTAKKYEAMRPEM------ 372
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
Q Y P+VD+VLTT E+ +I + FE LE+ +D+ L ++
Sbjct: 373 QSSGY-------PDVDAVLTTRELAHMIHQAGITFEQLEDDHMDEPLGISTGAADIF--- 422
Query: 238 GSSGGYAETVFRHAAKTLFGKVIE---GHLEFKTIRN-SDFREVALEVEGKTL------- 286
G++GG E R + + GK + G LE +R ++ L ++G
Sbjct: 423 GATGGVMEAALRTVHELVTGKPLPGPGGRLELVPVRGLEGVKQAKLPIQGTVAEWGFLEG 482
Query: 287 --LKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIK 344
L A+ +G N ++++++ FVE+M CP GC+ GGGQ P+P L +
Sbjct: 483 EELSVAVAHGLSNAARLLQEIQHGSISPHFVEIMCCPGGCIGGGGQ--PRPTTDAVRLAR 540
Query: 345 TLETIYLENVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ +Y E+ L +NP V++LY E+L +PGS A + +HT Y
Sbjct: 541 -MRALYDEDAAKPLRGSHQNPAVQALYREFLGEPGSAAAHRLLHTSY 586
>gi|167759826|ref|ZP_02431953.1| hypothetical protein CLOSCI_02189 [Clostridium scindens ATCC 35704]
gi|167662445|gb|EDS06575.1| hydrogenase, Fe-only [Clostridium scindens ATCC 35704]
Length = 576
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 193/383 (50%), Gaps = 33/383 (8%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N K VI ++P R + +E + P + K+ LK +GV FDT+ S DLT++E
Sbjct: 218 NPDKIVIAQVAPAVRTAWSEGLNLDPEEATVGKILDALKRMGVDYAFDTAFSADLTIMEE 277
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
EF+ R+ + D PM +S CPGW+ + + Q +++ Y+S+ KSPQQ G
Sbjct: 278 ATEFLKRFTSGELKD-------RPMFTSCCPGWVRFVKSQF-PHMVKYLSTAKSPQQMFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A +K + +K+G P++IY V+VMPC KK E E F + +VD
Sbjct: 330 AIMKTYFAEKIGVSPEQIYTVSVMPCVAKKDEREMELFYGEYAGH------------DVD 377
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+V+TT E++ +I+ ++ + LE+ D + G ++ G++GG E R A
Sbjct: 378 AVITTRELIKMIRSAHISPDTLEDIKSDTPMREGSGAGVIF---GATGGVMEAALRSAYY 434
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVEG-----KTLLKFALCYGFQNLQNIVRKVKMR 308
L + + F+ +R+ F+E VE +K A+ G N + ++++++
Sbjct: 435 LLKSENPDVD-AFRVVRSPGFQENNGVVEADFTIDDITVKTAVVSGLANTRVLLKRIERE 493
Query: 309 KCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL-ENVMLADPFKNPLVRS 367
+ Y FVEVMACP GC+ GGGQ + + K L + NV + +N +
Sbjct: 494 EVHYDFVEVMACPGGCVGGGGQPIHDGEERAYDRGKNLYMLDAGANVRFS--HENRDIIR 551
Query: 368 LYDEWLEQPGSEKAKKHVHTEYH 390
+YDE+LE+P S KA +HTE+
Sbjct: 552 IYDEYLEKPNSHKAHMLLHTEHR 574
>gi|295087525|emb|CBK69048.1| hydrogenases, Fe-only [Bacteroides xylanisolvens XB1A]
Length = 599
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 199/394 (50%), Gaps = 29/394 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ E+ + L ++ N K VI+ +P RA+L E FG P V K+ L+ LG
Sbjct: 224 LTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTLVTGKMVYALRELGFDY 283
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E +E + R + D + LP+L+S CP W+ + E +
Sbjct: 284 VFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSCCPAWVNFFEHHFPD-M 339
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ +SPQQ G+ K + +K+G +++ V++MPC KK E AR++F
Sbjct: 340 LDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAKKYECARDEFKVN---- 395
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
IP+VD ++T E+ LI+ + F + +SP D + G ++ G
Sbjct: 396 ---------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDNPMGESTGAGVIF---G 443
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R + G+ ++ ++ F+ +R + R + + G LK + +G N
Sbjct: 444 TTGGVMEAALRSVYEIYTGEPLK-NVNFEQVRGLNGVRRATINLNGFE-LKVGIAHGLGN 501
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVM 355
++++ ++ +Y +E+MACP GC+ GGGQ P + + L +Y E N
Sbjct: 502 ARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEILYARANALYREDANKP 559
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP +++LY+++L +P EK++ +HT Y
Sbjct: 560 LRKSHENPYIKTLYEDYLGKPLGEKSETLLHTHY 593
>gi|293371347|ref|ZP_06617784.1| putative ferredoxin hydrogenase [Bacteroides ovatus SD CMC 3f]
gi|336404793|ref|ZP_08585483.1| hypothetical protein HMPREF0127_02796 [Bacteroides sp. 1_1_30]
gi|336415948|ref|ZP_08596286.1| hypothetical protein HMPREF1017_03394 [Bacteroides ovatus
3_8_47FAA]
gi|292633707|gb|EFF52262.1| putative ferredoxin hydrogenase [Bacteroides ovatus SD CMC 3f]
gi|335939851|gb|EGN01723.1| hypothetical protein HMPREF1017_03394 [Bacteroides ovatus
3_8_47FAA]
gi|335941065|gb|EGN02926.1| hypothetical protein HMPREF0127_02796 [Bacteroides sp. 1_1_30]
Length = 588
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 199/394 (50%), Gaps = 29/394 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ E+ + L ++ N K VI+ +P RA+L E FG P V K+ L+ LG
Sbjct: 213 LTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTLVTGKMVYALRELGFDY 272
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E +E + R + D + LP+L+S CP W+ + E +
Sbjct: 273 VFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSCCPAWVNFFEHHFPD-M 328
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ +SPQQ G+ K + +K+G +++ V++MPC KK E AR++F
Sbjct: 329 LDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAKKYECARDEFKVN---- 384
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
IP+VD ++T E+ LI+ + F + +SP D + G ++ G
Sbjct: 385 ---------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDNPMGESTGAGVIF---G 432
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R + G+ ++ ++ F+ +R + R + + G LK + +G N
Sbjct: 433 TTGGVMEAALRSVYEIYTGEPLK-NVNFEQVRGLNGVRRATINLNGFE-LKVGIAHGLGN 490
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVM 355
++++ ++ +Y +E+MACP GC+ GGGQ P + + L +Y E N
Sbjct: 491 ARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEILYARANALYREDANKP 548
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP +++LY+++L +P EK++ +HT Y
Sbjct: 549 LRKSHENPYIKTLYEDYLGKPLGEKSETLLHTHY 582
>gi|383114977|ref|ZP_09935736.1| hydrogenase, Fe-only [Bacteroides sp. D2]
gi|313693311|gb|EFS30146.1| hydrogenase, Fe-only [Bacteroides sp. D2]
Length = 588
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 198/394 (50%), Gaps = 29/394 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ E+ + L ++ N K VI+ +P RA+L E FG P V K+ L+ LG
Sbjct: 213 LTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTLVTGKMVYALRELGFDY 272
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E +E + R + D + LP+L+S CP W+ + E +
Sbjct: 273 VFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSCCPAWVNFFEHHFPD-M 328
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ +SPQQ G+ K + +K+G +++ V+ MPC KK E AR++F
Sbjct: 329 LDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSTMPCLAKKYECARDEFKVN---- 384
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
IP+VD ++T E+ LI+ + F + +SP D + G ++G
Sbjct: 385 ---------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDNPMGESTGAGVIFG--- 432
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R + G+ ++ ++ F+ +R + R + + G L K + +G N
Sbjct: 433 TTGGVMEAALRSVYEIYTGETLK-NVNFEQVRGLNGVRRATINLNGFEL-KVGIAHGLGN 490
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVM 355
++++ ++ +Y +E+MACP GC+ GGGQ P + + L +Y E N
Sbjct: 491 ARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEILYARANALYREDANKP 548
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP +++LY+++L +P EK++ +HT Y
Sbjct: 549 LRKSHENPYIKTLYEDYLGKPLGEKSETLLHTHY 582
>gi|160887580|ref|ZP_02068583.1| hypothetical protein BACOVA_05602 [Bacteroides ovatus ATCC 8483]
gi|156107991|gb|EDO09736.1| hydrogenase, Fe-only [Bacteroides ovatus ATCC 8483]
Length = 588
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 199/394 (50%), Gaps = 29/394 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ E+ + L ++ N K VI+ +P RA+L E FG P V K+ L+ LG
Sbjct: 213 LTERDYTNHLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTLVTGKMVYALRELGFDY 272
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E +E + R + D + LP+L+S CP W+ + E +
Sbjct: 273 VFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSCCPAWVNFFEHHFPD-M 328
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ +SPQQ G+ K + +K+G +++ V++MPC KK E AR++F
Sbjct: 329 LDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAKKYECARDEFKVN---- 384
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
IP+VD ++T E+ LI+ + F + +SP D + G ++ G
Sbjct: 385 ---------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDNPMGESTGAGVIF---G 432
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R + G+ ++ ++ F+ +R + R + + G LK + +G N
Sbjct: 433 TTGGVMEAALRSVYEIYTGEPLK-NVNFEQVRGLNGVRRATINLNGFE-LKVGIAHGLGN 490
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVM 355
++++ ++ +Y +E+MACP GC+ GGGQ P + + L +Y E N
Sbjct: 491 ARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEILYARANALYREDANKP 548
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP +++LY+++L +P EK++ +HT Y
Sbjct: 549 LRKSHENPYIKTLYEDYLGKPLGEKSETLLHTHY 582
>gi|299146441|ref|ZP_07039509.1| putative [Fe] hydrogenase, large subunit HymC [Bacteroides sp.
3_1_23]
gi|298516932|gb|EFI40813.1| putative [Fe] hydrogenase, large subunit HymC [Bacteroides sp.
3_1_23]
Length = 588
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 199/394 (50%), Gaps = 29/394 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ E+ + L ++ N K VI+ +P RA+L E FG P V K+ L+ LG
Sbjct: 213 LTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTLVTGKMVYALRELGFDY 272
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E +E + R + D + LP+L+S CP W+ + E +
Sbjct: 273 VFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSCCPAWVNFFEHHFPD-M 328
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ +SPQQ G+ K + +K+G +++ V++MPC KK E AR++F
Sbjct: 329 LDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAKKYECARDEFKVN---- 384
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
IP+VD ++T E+ LI+ + F + +SP D + G ++ G
Sbjct: 385 ---------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDNPMGESTGAGVIF---G 432
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R + G+ ++ ++ F+ +R + R + + G LK + +G N
Sbjct: 433 TTGGVMEAALRSVYEIYTGEPLK-NVNFEQVRGLNGVRRATINLNGFE-LKVGIAHGLGN 490
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVM 355
++++ ++ +Y +E+MACP GC+ GGGQ P + + L +Y E N
Sbjct: 491 ARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEILYARANALYREDANKP 548
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP +++LY+++L +P EK++ +HT Y
Sbjct: 549 LRKSHENPYIKTLYEDYLGKPLGEKSETLLHTHY 582
>gi|85000289|ref|XP_954863.1| nuclear-architecture-related protein (NARF) or Fe-hydrogenase
[Theileria annulata strain Ankara]
gi|65303009|emb|CAI75387.1| nuclear-architecture-related protein (NARF) or Fe-hydrogenase,
putative [Theileria annulata]
Length = 666
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 123/452 (27%), Positives = 188/452 (41%), Gaps = 144/452 (31%)
Query: 21 IISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIAR 80
+IS+SPQ+ L+ H+ + + F+KL + LG K +FD + L+L ++ +EFI +
Sbjct: 118 VISISPQTIFMLSSHYNMKAEKAFRKLCYLFRFLGAKLVFDIGLAELLSLTQSKDEFIDK 177
Query: 81 Y-------------------------KQSQESDDERSNSSLPMLSSACPGWICYAEKQLG 115
Y K + +LP+++S CPGW YAEK L
Sbjct: 178 YYNNNTVSSTSSSDLGVSNKIVNGINKDLNGENTRERRLNLPIITSHCPGWTLYAEKTLD 237
Query: 116 SYILPYISSVKSPQQTIGATIK------------HHICQ--------------------- 142
++ IS V S Q G +K +HI
Sbjct: 238 QELVDLISKVPSSQVIQGLLVKILSHTINYYKTIYHINYLKLFISYSFLNSFLTDAKNYN 297
Query: 143 -----------KLGFRPDEIYHVTVMPCYDKKLEAAREDF---------VFQLDSQEETY 182
KL +IYH++++PCYDKK E R +F ++Q DS T
Sbjct: 298 TDGQNNIINNFKLTNTNTKIYHISIVPCYDKKFETIRTEFQLNFNSLFSLYQPDSNPTTS 357
Query: 183 RD----EGLEI-PEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT------------ 225
D + LE P VD +L+T ++ ++ + F L+E P D ++
Sbjct: 358 SDPDDSQALEKEPLVDDILSTSDIESILSSLGLKFTQLKEEPPDHLVNFLYFFNKFNSIS 417
Query: 226 -------------NVDDEGHL------YGVAGSSGGYAETVFRHAAKTLFGKVIEG-HLE 265
+ D HL G+ SGG+AE +F+H+ K LF ++ +L+
Sbjct: 418 SLNIKHNLNLPTYDSKDYNHLKRLIRCSGLYAQSGGFAEEIFKHSCKQLFNMDLDNSNLK 477
Query: 266 FKTIRNSDFRE-VALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK--------------- 309
F N+DF+E V L+ LL+F + YGF+N+QNI++ +K K
Sbjct: 478 FTETINNDFKECVLLDENNDVLLRFIIAYGFRNIQNIIKLLKSHKSTLDSSGNYYQKQPD 537
Query: 310 -----------CDYQFVEVMACPSGCLNGGGQ 330
CDY VE+MACP GC NG GQ
Sbjct: 538 GLGNRNGKDFVCDY--VELMACPGGCFNGAGQ 567
>gi|340751485|ref|ZP_08688297.1| hydrogenase [Fusobacterium mortiferum ATCC 9817]
gi|229420453|gb|EEO35500.1| hydrogenase [Fusobacterium mortiferum ATCC 9817]
Length = 642
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 115/382 (30%), Positives = 194/382 (50%), Gaps = 30/382 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ ++P R ++ E FG P V KKL LK LGV +FDT+ + D+T++E E
Sbjct: 286 KKVVVQVAPAVRVAIGEAFGFEPGTNVEKKLVGALKKLGVDYVFDTTWAADMTIMEEAAE 345
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F R ++ + DD LP+L+S CP W+ + E+ ++ S+ KSP +
Sbjct: 346 FQERLERYYKGDD---TVKLPILTSCCPAWVKFIEQNYPD-MMDVPSTAKSPMEIFSTIA 401
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K ++ GFR +EI V +MPC KK EAAR +F S+ + Y + D V+
Sbjct: 402 KDIWAKEQGFRREEIASVAIMPCLAKKYEAARPEF-----SRGDNY--------DTDYVI 448
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
+T E++ + + ++ +EE D L G ++G +GG E R + +
Sbjct: 449 STRELIKIFKESGIDLNNVEEMEFDNPLGQYSGAGIIFG---RTGGVIEAATRTTVEMIT 505
Query: 257 GKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVE 316
G ++ ++EF +R D VA G L+ + +G + ++ K++ + + +E
Sbjct: 506 GTHLD-NIEFNELRGWDGFRVAELTIGHIELRIGVAHGLEEAAKMLDKIRAGEEFFHAIE 564
Query: 317 VMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV----MLADPFKNPLVRSLYDEW 372
+MAC GC+ GGGQ PK + L K E L N+ + +NP V+++Y+++
Sbjct: 565 IMACKGGCIGGGGQ--PKALKKQITLEKRAEG--LNNIDRGLEIRRSHENPYVKAMYEKY 620
Query: 373 LEQPGSEKAKKHVHTEYHPVVK 394
L+ P S KA + +HT+Y P +K
Sbjct: 621 LDYPLSHKAHELLHTKYFPKIK 642
>gi|262407421|ref|ZP_06083969.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_22]
gi|294646920|ref|ZP_06724541.1| putative ferredoxin hydrogenase [Bacteroides ovatus SD CC 2a]
gi|294810789|ref|ZP_06769435.1| putative ferredoxin hydrogenase [Bacteroides xylanisolvens SD CC
1b]
gi|345512101|ref|ZP_08791640.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
gi|229443453|gb|EEO49244.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
gi|262354229|gb|EEZ03321.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_22]
gi|292637865|gb|EFF56262.1| putative ferredoxin hydrogenase [Bacteroides ovatus SD CC 2a]
gi|294441977|gb|EFG10798.1| putative ferredoxin hydrogenase [Bacteroides xylanisolvens SD CC
1b]
Length = 588
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 199/394 (50%), Gaps = 29/394 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ E+ + L ++ N K VI+ +P RA+L E FG P V K+ L+ LG
Sbjct: 213 LTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTLVTGKMVYALRELGFDY 272
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E +E + R + D + LP+L+S CP W+ + E +
Sbjct: 273 VFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSCCPAWVNFFEHHFPD-M 328
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ +SPQQ G+ K + +K+G +++ V++MPC KK E AR++F
Sbjct: 329 LNIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAKKYECARDEFKVN---- 384
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
IP+VD ++T E+ LI+ + F + +SP D + G ++ G
Sbjct: 385 ---------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDNPMGESTGAGVIF---G 432
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R + G+ ++ ++ F+ +R + R + + G LK + +G N
Sbjct: 433 TTGGVMEAALRSVYEIYTGEPLK-NVNFEQVRGLNGVRRATINLNGFE-LKVGIAHGLGN 490
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVM 355
++++ ++ +Y +E+MACP GC+ GGGQ P + + L +Y E N
Sbjct: 491 ARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEILYARANALYREDANKP 548
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP +++LY+++L +P EK++ +HT Y
Sbjct: 549 LRKSHENPYIKTLYEDYLGKPLGEKSETLLHTHY 582
>gi|402832996|ref|ZP_10881619.1| [FeFe] hydrogenase, group A [Selenomonas sp. CM52]
gi|402281739|gb|EJU30365.1| [FeFe] hydrogenase, group A [Selenomonas sp. CM52]
Length = 586
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 191/375 (50%), Gaps = 31/375 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI+ ++P R SL + F + P + ++ LK LG +FDT+ DLT++E +E
Sbjct: 228 KHVIVQVAPAVRVSLGDEFHLPPGAIVTGQMVAALKRLGFDRVFDTNFGADLTIMEEGHE 287
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
FI R + +LPM++S PGW+ Y EK S +LP++S+ KSP Q GA
Sbjct: 288 FIHRLEHG---------GTLPMMTSCSPGWVNYVEKHY-SDLLPHLSTAKSPMQIFGAVA 337
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + ++ G ++I V+VMPC KK EAAR + + ++D VD V+
Sbjct: 338 KTYYPKQSGIPVEDIVTVSVMPCTAKKFEAARPEM------GRDGHQD-------VDIVI 384
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ LI + F L E D L G ++G ++GG E R +
Sbjct: 385 TTRELAKLIHYIGITFHDLPEEDFDSPLGTCSGAGAIFG---TTGGVMEAALRTVYEKAT 441
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
GK + ++F +R D +E +++ G+ ++ A+ + +N ++I+ ++K K Y F+
Sbjct: 442 GKTLPS-IDFLAVRGMDGIKEATVDL-GERKVRVAVAHTLKNAKHIMDELKAGKSPYDFI 499
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQ 375
EVMACP GC GGGQ E +K L I +N+ + +NP V +Y E+L
Sbjct: 500 EVMACPGGCQGGGGQPLNTTNARRAERMKALYEID-KNLPVRKSHENPEVVHIYKEFLGA 558
Query: 376 PGSEKAKKHVHTEYH 390
P KA + +HT +H
Sbjct: 559 PLEGKAHELLHTHFH 573
>gi|317472987|ref|ZP_07932290.1| iron only hydrogenase large subunit domain-containing protein
[Anaerostipes sp. 3_2_56FAA]
gi|316899532|gb|EFV21543.1| iron only hydrogenase large subunit domain-containing protein
[Anaerostipes sp. 3_2_56FAA]
Length = 572
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 112/386 (29%), Positives = 200/386 (51%), Gaps = 42/386 (10%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
++ K V+ ++P RA+ AE G+S + +K+ T + +G+ +FDT+ S DLT++E
Sbjct: 218 DENKIVVAQIAPAVRAAWAEQLGLSREEAPVEKIVTAFRRMGIDYVFDTTFSADLTIMEE 277
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EF+ R Q+ D E PM +S CPGW+ + + Q I +S+ KSPQQ G
Sbjct: 278 GSEFVKRL---QDGDLE----EYPMFTSCCPGWVRFIKTQFPDMI-GRLSTAKSPQQMFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A +K + +KLG P+ I+ +++MPC KK E ++D E Y ++D
Sbjct: 330 AVMKTYFAKKLGVDPERIFTLSIMPCLAKKAER-------EMDLFYEEYAGH-----DID 377
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
VLTT E+ +++ + +N + LE+ D G ++G ++GG E R A
Sbjct: 378 CVLTTRELDRMLRAEHLNLQFLEKGEFDSPFETGTGAGVIFG---ATGGVMEAALRSAYF 434
Query: 254 TLFGKV--IEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
+ G+ + E + ++ + E +V G +++ A+ G N +N++ ++ ++
Sbjct: 435 LVTGENPDADAFREIRGVKRQGWTEAEFDVAG-NVIRVAVVSGLGNTRNLMEAIRRKEVK 493
Query: 312 YQFVEVMACPSGC-------LNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPL 364
Y+FVEVMACP GC ++ G ++ + G S L + E + + NP
Sbjct: 494 YEFVEVMACPGGCAGGGGQPIHDGQELAEERGSSLYFLDRDTEIRFSHD--------NPD 545
Query: 365 VRSLYDEWLEQPGSEKAKKHVHTEYH 390
+++LY+E+ E+P S +A + +HTE+
Sbjct: 546 IQNLYEEFFEKPLSHRAHQLLHTEHQ 571
>gi|383785982|ref|YP_005470551.1| hydrogenase, Fe-only [Fervidobacterium pennivorans DSM 9078]
gi|383108829|gb|AFG34432.1| hydrogenase, Fe-only [Fervidobacterium pennivorans DSM 9078]
Length = 583
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 128/390 (32%), Positives = 191/390 (48%), Gaps = 39/390 (10%)
Query: 5 QSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTS 63
+ L L N N GK I +P R ++ E FG+ P V K+ L+ LG +FDT+
Sbjct: 211 KKLLHMLENKN-GKVFIAQTAPSVRVAIGEEFGMEPGTVSTGKMVAALRRLGFDYVFDTN 269
Query: 64 CSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYIS 123
DLT++E +E + R + LPM +S CPGW+ EK+ +I P +S
Sbjct: 270 FGADLTIMEEAHELLHRLTKG---------GVLPMFTSCCPGWVNMVEKEFPEFI-PNLS 319
Query: 124 SVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYR 183
+ KSP Q + +T + + +KLG P+ I V VMPC KK E R V
Sbjct: 320 TTKSPMQIMSST-REYFAKKLGVAPENIVMVAVMPCTAKKDEIERSQHVVN--------- 369
Query: 184 DEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGY 243
G+++ D V+TT E +++ K ++F L E D L G ++GV +GG
Sbjct: 370 --GIKV--TDYVITTREFAKMLRFKGISFVNLPEEKHDSPLGASSGAGAIFGV---TGGV 422
Query: 244 AETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTL-LKFALCYGFQNLQNI 301
E R A + G+ + L F +R D RE EV+ KT LK A+ G N + +
Sbjct: 423 MEAALRTAYEKFTGEKLP-RLVFSEVRGLDGIREA--EVDFKTRKLKVAIVNGTANAKRL 479
Query: 302 VRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADP 359
++++K K +Y FVEVMAC GC+ GGGQ K P + K IY E ++
Sbjct: 480 LKEIKEGKRNYDFVEVMACMGGCIGGGGQPK---SLDPDIIKKRARAIYSIDEMSVIRRS 536
Query: 360 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+NP + LY+E++ +P A ++HT Y
Sbjct: 537 HENPEIIQLYEEFVGEPNGHVAHHYLHTYY 566
>gi|71017002|ref|XP_758949.1| hypothetical protein UM02802.1 [Ustilago maydis 521]
gi|74702333|sp|Q4PAR1.1|NAR1_USTMA RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|46098480|gb|EAK83713.1| hypothetical protein UM02802.1 [Ustilago maydis 521]
Length = 827
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 133/403 (33%), Positives = 186/403 (46%), Gaps = 109/403 (27%)
Query: 1 MLEKQSLDEF------LSNINKGKAVIISLSPQSRASLAEHFGIS--------------- 39
++ QS DE L+ N K V+ S+S QS ASL+ +
Sbjct: 106 LITMQSQDEMRRAIAELNQSNANKLVVASISTQSLASLSAKYTFQHPQPSSSRSASTSTL 165
Query: 40 PLQVF-KKLTTFLKSL-GVKSIFDTSCSRDLTLIEACNEFIARYKQSQE---------SD 88
PL+V +++ FLK++ G ++DT+ +R + L E EF R + +++ D
Sbjct: 166 PLRVLLHRISYFLKTVFGFDHVYDTTFARHIALKEHQREFFQRRENARKRAKLSNAPADD 225
Query: 89 DER------SNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQ 142
D+R +LPML+SACPGWICYAEK G +LPYIS+ KSPQQ G K + +
Sbjct: 226 DDRLHPDQVDGPTLPMLASACPGWICYAEKTHGE-LLPYISTTKSPQQVAGVIAKRFLPE 284
Query: 143 KLGF----RPDE--IYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
+LG PD+ IYHVTVMPCYDKKLEA+R DF D+ EVD VL
Sbjct: 285 RLGLLAPSAPDQPSIYHVTVMPCYDKKLEASRPDFY-----------DDITGTKEVDCVL 333
Query: 197 TTGEVLDLIQLKAVNF--------EALEESPLDKML-----TNVDDEGH----------- 232
TTGE+ L+ +A + EA++ES + L T D G
Sbjct: 334 TTGELDKLMLDEAFDICTPVPGEQEAIQESIAELSLQQAFNTPNPDVGSASVSMMPRLPR 393
Query: 233 ----LYGVAGSSGGYAETVFRHA------------AKTLFGKVIEGHLEFKTIRNSDFRE 276
L SSGGY + R ++ + I L+ + IR +DF E
Sbjct: 394 LPQLLDQPGSSSGGYLFLLMRAVWLDWISVHWDSLPLSVREQGILPKLDVRVIRTTDFTE 453
Query: 277 VALEV-------------EGKTLLKFALCYGFQNLQNIVRKVK 306
L + L + A CYGF+NLQN+VRK++
Sbjct: 454 FVLRAPTQLVEPCNDDTSQSSILFRGAQCYGFRNLQNLVRKLQ 496
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETI 349
Y +VEVMACPSGC+NGGGQI+P P QS ++ ++ T+
Sbjct: 583 YDYVEVMACPSGCVNGGGQIRP-PTQSDVDVTRSSTTV 619
>gi|270297046|ref|ZP_06203245.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20]
gi|270273033|gb|EFA18896.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20]
Length = 588
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 115/394 (29%), Positives = 199/394 (50%), Gaps = 29/394 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ E+ + L ++ N K VI+ +P RA+L E FG+ P V K+ L+ LG
Sbjct: 213 LTERDHTNRLLEDLANPDKVVIVQTAPAVRAALGEEFGLPPGTLVTGKMVYALRELGFDY 272
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E E + R + + D + LP+L+S CP W+ + E +
Sbjct: 273 VFDTDFAADLTIMEEGAEILNRLTRYLQGD---KSVRLPILTSCCPAWVNFFEHHFPD-M 328
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ +SPQQ G+ K +K+G +++ V++MPC KK E RE+F + D
Sbjct: 329 LDIPSTARSPQQMFGSIAKTFWAKKMGIPREKLVVVSIMPCLAKKYECDREEF--KTDGN 386
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
P+VD ++T E+ LI+ + F L + D + G ++G
Sbjct: 387 -----------PDVDYSISTRELARLIRRANIGFTLLTDKEFDLPMGASTGAGVIFG--- 432
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E V R + G+ ++ ++ F+ +R + R ++++G L K + +G N
Sbjct: 433 TTGGVMEAVLRSVYEIYTGRTLD-NVNFEQVRGLAGVRRATIDLDGFEL-KVGIAHGLGN 490
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVM 355
++++ ++ +Y +E+MACP GC+ GGGQ P + L +Y E N
Sbjct: 491 ARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSDVLYARANALYREDANKP 548
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP +++LY+E+L +P SE A+ +HT Y
Sbjct: 549 LRKSHENPYIKTLYEEYLGKPLSETAEHLLHTHY 582
>gi|410658280|ref|YP_006910651.1| [Fe] hydrogenase, large subunit HymC [Dehalobacter sp. DCA]
gi|410661265|ref|YP_006913636.1| [Fe] hydrogenase, large subunit HymC [Dehalobacter sp. CF]
gi|409020635|gb|AFV02666.1| [Fe] hydrogenase, large subunit HymC [Dehalobacter sp. DCA]
gi|409023621|gb|AFV05651.1| [Fe] hydrogenase, large subunit HymC [Dehalobacter sp. CF]
Length = 572
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 124/377 (32%), Positives = 192/377 (50%), Gaps = 37/377 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ ++P R SLAE FG ++ KL + L+SLG +FDT S DLT++E +E
Sbjct: 224 KHVVVQVAPAVRVSLAEEFGFPSGEIATGKLVSALRSLGFDRVFDTDFSADLTIMEEGHE 283
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R + LPM++S PGWI Y E I P++S+ KSPQQ GA
Sbjct: 284 LLDRIA---------NGGVLPMITSCSPGWIKYMEHYYPELI-PHLSTCKSPQQMFGALA 333
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + Q G +I V+VMPC KK EA R + SQ +VD VL
Sbjct: 334 KTYYAQTSGLEAKDIIVVSVMPCTAKKFEAERPEMNAS-GSQ------------DVDIVL 380
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ ++Q + ++F L E+ D L ++ G++GG E R + +
Sbjct: 381 TTRELGRMLQHEGIDFRMLPEAEFDSPLGISTGAAAIF---GATGGVMEAALRTVYEVVT 437
Query: 257 GKVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G+ + L F +R +E ++++ G T +K + +G N + I+ +K + DY F+
Sbjct: 438 GRTLT-DLNFTAVRGMVGVKEASVDLAG-TEVKAGIAHGLANAKRILEMIKAGQADYTFI 495
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYL--ENVMLADPFKNPLVRSLYDEW 372
EVM CP GC+ GGGQ P + E+ + +E +Y EN+ L +NP V+ LY ++
Sbjct: 496 EVMCCPGGCIGGGGQ----PYGTTNEIRARRIEALYQVDENMPLRKSHENPAVQELYQDF 551
Query: 373 LEQPGSEKAKKHVHTEY 389
L P E + + +HT+Y
Sbjct: 552 LLDPLGELSHRLLHTQY 568
>gi|326791478|ref|YP_004309299.1| hydrogenase, Fe-only [Clostridium lentocellum DSM 5427]
gi|326542242|gb|ADZ84101.1| hydrogenase, Fe-only [Clostridium lentocellum DSM 5427]
Length = 584
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 189/382 (49%), Gaps = 33/382 (8%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+ GK V++ +P RA+L E FG++P V K+ L+ LG +FDT + D T++E
Sbjct: 227 DPGKVVVVQTAPAVRAALGEEFGMAPGTLVTGKMVAALRKLGFNYVFDTDFAADATIMEE 286
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
E + R + Q D LP+L+S CP W+ + E Q +L SS KSPQQ G
Sbjct: 287 GAELVDRLTRFQNGD---PTVKLPILTSCCPAWVNFFESQFPD-LLDIPSSAKSPQQMFG 342
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + QK+ P + V+VMPC KK EA+R +F EVD
Sbjct: 343 AIAKSYFAQKMNIDPKNMVVVSVMPCLAKKYEASRPEFN-----------------REVD 385
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
++T E+ LI+ ++F L E D L ++ G++GG E R A +
Sbjct: 386 ISISTRELAHLIKKANIDFNNLPEEDFDHPLGESTGASVIF---GTTGGVIEAAVRTAYE 442
Query: 254 TLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVK-MRKCD 311
+ G+ + G ++F+ +R + R +++V G L + +G N + ++ +++ +
Sbjct: 443 VITGETL-GKVDFEELRGFEGIRSASVKV-GDLDLNIGIAHGLGNARLLLEEIRGGNPNN 500
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLY 369
Y +E+MACP GC+ GGGQ P + + L + IY E N + +NP ++ +Y
Sbjct: 501 YHAIEIMACPGGCIGGGGQ--PYHHGNSEILKQRQAAIYEEDRNKAIRKSHENPYIKEMY 558
Query: 370 DEWLEQPGSEKAKKHVHTEYHP 391
+ +P S KA + +HT Y P
Sbjct: 559 ANYFGKPMSHKAHELLHTHYEP 580
>gi|260886835|ref|ZP_05898098.1| ferredoxin hydrogenase [Selenomonas sputigena ATCC 35185]
gi|330839361|ref|YP_004413941.1| hydrogenase, Fe-only [Selenomonas sputigena ATCC 35185]
gi|260863434|gb|EEX77934.1| ferredoxin hydrogenase [Selenomonas sputigena ATCC 35185]
gi|329747125|gb|AEC00482.1| hydrogenase, Fe-only [Selenomonas sputigena ATCC 35185]
Length = 586
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 192/375 (51%), Gaps = 31/375 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI+ ++P R SL + F + P + ++ LK LG +FDT+ DLT++E +E
Sbjct: 228 KHVIVQVAPAVRVSLGDEFHLPPGAIVTGQMVAALKRLGFDRVFDTNFGADLTIMEEGHE 287
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
FI R + + +LPM++S PGW+ Y EK S +LP++S+ KSP Q GA
Sbjct: 288 FIHRLE---------NGGTLPMMTSCSPGWVNYVEKHY-SDLLPHLSTAKSPMQIFGAVA 337
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + ++ G ++I V+VMPC KK EAAR + + ++D VD V+
Sbjct: 338 KTYYPKQSGIPVEDIVTVSVMPCTAKKFEAARPEM------GRDGHQD-------VDIVI 384
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ LI + F L E D L G ++G ++GG E R +
Sbjct: 385 TTRELAKLIHYVGITFHDLPEEDFDSPLGTCSGAGAIFG---TTGGVMEAALRTVYEKAT 441
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
GK + ++F +R D +E +++ G+ ++ A+ + +N ++I+ ++K K Y F+
Sbjct: 442 GKTLPS-IDFLAVRGMDGIKEATVDL-GERKVRVAVAHTLKNAKHIMDELKAGKSPYDFI 499
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQ 375
EVMACP GC GGGQ E +K L I +N+ + +NP V +Y E+L
Sbjct: 500 EVMACPGGCQGGGGQPLNTTNARRVERMKALYEID-KNLPVRKSHENPEVVHIYKEFLGA 558
Query: 376 PGSEKAKKHVHTEYH 390
P KA + +HT +H
Sbjct: 559 PLEGKAHELLHTHFH 573
>gi|357055534|ref|ZP_09116602.1| hypothetical protein HMPREF9467_03574 [Clostridium clostridioforme
2_1_49FAA]
gi|355382653|gb|EHG29750.1| hypothetical protein HMPREF9467_03574 [Clostridium clostridioforme
2_1_49FAA]
Length = 451
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 186/387 (48%), Gaps = 43/387 (11%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V+ S +P R L E FG P V ++ + L+ LG + D + S DLT++E E
Sbjct: 88 KIVVFSTAPSVRVGLGECFGGRPGDFVEGRMVSALRELGADYVLDVAFSADLTIMEEGTE 147
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAE----KQLGSYILPYISSVKSPQQTI 132
F+ R+ + LP +S CP W+ Y E +++G +SS KSP
Sbjct: 148 FLRRFLTG--------SHPLPQFTSCCPAWVKYVETFHPERIGC-----LSSAKSPISMQ 194
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
GA IK + ++ G P I +V V PC KK E +RE+ Y+ IP +
Sbjct: 195 GALIKTYFAREQGIDPGRIVNVAVAPCTAKKFEISREELC-----SSGIYQG----IPGL 245
Query: 193 ---DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFR 249
D VLTT E+ + I + F L+ S D ++ G ++ G++GG E R
Sbjct: 246 MDNDYVLTTRELAEWITESGIEFYGLDPSSFDSLMGEGSGAGVIF---GNTGGVMEAALR 302
Query: 250 HAAKTLFGK-VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKM 307
A + GK ++ L+++ +R D +E + + G+ ++ A+ YG + + ++ +
Sbjct: 303 MAYSVVSGKEPMDLLLKYRPVRGLDQVKETVVSLGGRD-VRAAVIYGTRAAEQLIGTGNI 361
Query: 308 RKCDYQFVEVMACPSGCLNGGGQ----IKPKPGQSPKELIKTLETIYLENVMLADPFKNP 363
Y FVEVM CP GC++GGGQ + P P + E IK+L E M+ N
Sbjct: 362 DS--YDFVEVMTCPGGCISGGGQPDNGVLPVPDRLRMERIKSLYRAD-EQRMVRSSLDNR 418
Query: 364 LVRSLYDEWLEQPGSEKAKKHVHTEYH 390
++ LY+ +L +P E A+ +HT YH
Sbjct: 419 EIKRLYERFLGEPMGELAQTLLHTCYH 445
>gi|225405662|ref|ZP_03760851.1| hypothetical protein CLOSTASPAR_04883 [Clostridium asparagiforme
DSM 15981]
gi|225042807|gb|EEG53053.1| hypothetical protein CLOSTASPAR_04883 [Clostridium asparagiforme
DSM 15981]
Length = 597
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 110/378 (29%), Positives = 181/378 (47%), Gaps = 42/378 (11%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+ GK VI+ ++P RA+L E FG+ V K+ T L +G +FDT S DLT++E
Sbjct: 218 DPGKRVIVQVAPAVRAALGEEFGLPCGTPVTGKMATALHEIGFDDVFDTLFSADLTILEE 277
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
E ++R + ++LPM++S PGWI + E Q L ++S+ KSP +G
Sbjct: 278 GTELLSRLNAALTG----GQATLPMITSCSPGWIKHVEHQFPGE-LDHLSTCKSPHTMMG 332
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A +K +K G +P++++ V+VMPC KK E R + ++D +I +VD
Sbjct: 333 AVVKTFYAEKTGTKPEDMFVVSVMPCTAKKYEIQRPE--MEVD-----------KIRDVD 379
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+VLTT E+ +I+ ++F L E D L ++GV G V A +
Sbjct: 380 AVLTTRELARMIKKCGIDFVNLPEGEFDAPLGLGTGAADIFGVTGG-------VMEAALR 432
Query: 254 TLFGKVIEGHLEFKTIRNS------DFREVALEVEGK---------TLLKFALCYGFQNL 298
T++ V L F+ + + + ++ +E + A+ G +
Sbjct: 433 TVYEVVTGTELPFEQLHVTPIVGLEQVKTASITIENTLPAYEHLKGVTVNIAVTSGLEGA 492
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD 358
++++V Y F+EVM CP GC+NGGGQ + ++ K L + E +L
Sbjct: 493 SMLMKEVADGTSPYHFIEVMGCPGGCINGGGQPRCTEENYREKRAKALYS-EDERKVLRK 551
Query: 359 PFKNPLVRSLYDEWLEQP 376
+NP + LY EWL +P
Sbjct: 552 SHENPDLMKLYGEWLGEP 569
>gi|148270497|ref|YP_001244957.1| hydrogenase large subunit [Thermotoga petrophila RKU-1]
gi|281412803|ref|YP_003346882.1| hydrogenase large subunit domain protein [Thermotoga naphthophila
RKU-10]
gi|147736041|gb|ABQ47381.1| hydrogenase large subunit domain protein [Thermotoga petrophila
RKU-1]
gi|281373906|gb|ADA67468.1| hydrogenase large subunit domain protein [Thermotoga naphthophila
RKU-10]
Length = 645
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 119/395 (30%), Positives = 194/395 (49%), Gaps = 55/395 (13%)
Query: 4 KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDT 62
+ +D+ + + K VI ++P RA++ E FGI + + +KL +FLK++G +FD
Sbjct: 204 RNDIDKLIEALESDKIVIGMIAPAVRAAIQEEFGIDEDVAMAEKLVSFLKTIGFDRVFDV 263
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
S DL E +EF R K+ + LP +S CP W+ +AE Y L +
Sbjct: 264 SFGADLVAYEEAHEFYERLKKGER---------LPQFTSCCPAWVKHAEHTYPQY-LQNL 313
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
SSVKSPQQ +G IK +KLG ++I+ V+ MPC KK EA RE+
Sbjct: 314 SSVKSPQQALGTVIKKIYARKLGVPEEKIFLVSFMPCTAKKFEAEREEH----------- 362
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSG- 241
+G+ VD VLTT E+ LI++ ++ +E P D+ YGV+ +G
Sbjct: 363 --KGI----VDIVLTTRELAQLIKMSRIDINRIEPQPFDRP----------YGVSSQAGL 406
Query: 242 --GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQ 299
G A VF L ++ ++ K+ + R + ++ T K A+ YG ++
Sbjct: 407 GFGKAGGVFSCVLSVLNEEIGIEKVDVKSPEDG-IRVAEVTLKDGTSFKGAVIYGLGKVK 465
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL-ETIYLENVMLAD 358
+ + K D + +EVMAC GC+ GGGQ P + + K L +T+ +++++
Sbjct: 466 KFLEERK----DVEIIEVMACNYGCVGGGGQPYPNDSRIREHRAKVLRDTMGIKSLLT-- 519
Query: 359 PFKNPLVRSLYDEWLEQPGSEKAKKH--VHTEYHP 391
P +N + LY+E L+ ++ +H +HT Y P
Sbjct: 520 PVENLFLMKLYEEDLK----DEHTRHEILHTTYRP 550
>gi|298481911|ref|ZP_07000100.1| hydrogenase large subunit HymC [Bacteroides sp. D22]
gi|298271775|gb|EFI13347.1| hydrogenase large subunit HymC [Bacteroides sp. D22]
Length = 588
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 112/394 (28%), Positives = 199/394 (50%), Gaps = 29/394 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ E+ + L ++ N K VI+ +P RA+L E FG P V K+ L+ LG
Sbjct: 213 LTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTLVTGKMVYALRELGFDY 272
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E +E + R + D + LP+L+S CP W+ + E +
Sbjct: 273 VFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSCCPAWVNFFEHHFPD-M 328
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ +SPQQ G+ K + +K+G +++ V++MPC K+ E AR++F
Sbjct: 329 LDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAKRYECARDEFKVN---- 384
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
IP+VD ++T E+ LI+ + F + +SP D + G ++G
Sbjct: 385 ---------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDNPMGESTGAGVIFG--- 432
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R + G+ ++ ++ F+ +R + R + + G L K + +G N
Sbjct: 433 TTGGVMEAALRSVYEIYTGEPLK-NVNFEQVRGLNGVRRATINLNGFEL-KVGIAHGLGN 490
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVM 355
++++ ++ +Y +E+MACP GC+ GGGQ P + + L +Y E N
Sbjct: 491 ARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEILYARANALYREDANKP 548
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP +++LY+++L +P EK++ +HT Y
Sbjct: 549 LRKSHENPYIKTLYEDYLGKPLGEKSETLLHTHY 582
>gi|332799825|ref|YP_004461324.1| hydrogenase, Fe-only [Tepidanaerobacter acetatoxydans Re1]
gi|438003089|ref|YP_007272832.1| Periplasmic [Fe] hydrogenase large subunit [Tepidanaerobacter
acetatoxydans Re1]
gi|332697560|gb|AEE92017.1| hydrogenase, Fe-only [Tepidanaerobacter acetatoxydans Re1]
gi|432179883|emb|CCP26856.1| Periplasmic [Fe] hydrogenase large subunit [Tepidanaerobacter
acetatoxydans Re1]
Length = 584
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 120/382 (31%), Positives = 194/382 (50%), Gaps = 42/382 (10%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI+ +P R SL E FG V KKL L+ LG +FDT S DLT++E +E
Sbjct: 224 KYVIVQTAPAIRVSLGEEFGGELGTIVTKKLPAALRRLGFDKVFDTDFSADLTILEEGSE 283
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ R + + LP+++S PGWI + E + L +S+ KSPQQ GA +
Sbjct: 284 FLDRLQ---------NGGKLPLITSCSPGWIKFCEHYYPEF-LDNLSTCKSPQQMFGALV 333
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +K+G P +I+ V++MPC KK E R + Y+D VD L
Sbjct: 334 KTYYAEKMGIDPSKIFSVSIMPCTAKKYECKRPEMF------SSGYQD-------VDVAL 380
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +++ +N L + D+ L G ++ G++GG E R + +
Sbjct: 381 TTRELSRMLKEAGINPNKLPDEEFDEPLGISTGAGAIF---GATGGVMEAALRTVYEIVT 437
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
K ++ +++F +R + +E +++EG + A+ +G N + ++ +VK + +Y F+
Sbjct: 438 KKELK-NIDFTEVRGVEGVKEATIDIEG-IKVNIAVAHGLSNARAVLDRVKNGEANYHFI 495
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKT------LETIYL--ENVMLADPFKNPLVRS 367
E+MACP GC+ GGGQ P S E + + IY N+ L +NP V++
Sbjct: 496 EIMACPGGCVGGGGQ----PILSADERWEADYREERAKAIYEVDRNMPLRKSHENPAVKA 551
Query: 368 LYDEWLEQPGSEKAKKHVHTEY 389
LY E+L +P EK+ + +HT Y
Sbjct: 552 LYKEFLGEPLGEKSHELLHTHY 573
>gi|182413362|ref|YP_001818428.1| hydrogenase, Fe-only [Opitutus terrae PB90-1]
gi|177840576|gb|ACB74828.1| hydrogenase, Fe-only [Opitutus terrae PB90-1]
Length = 581
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 113/384 (29%), Positives = 204/384 (53%), Gaps = 38/384 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
++ K ++ ++P R ++ E FG+ P + KKL + L+ LG K++FDT+ + D+T++E
Sbjct: 219 DEDKICVVQIAPSVRVTVGEAFGLPPGTNLTKKLYSALRRLGFKAVFDTNFAADVTIVEE 278
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EF+ R+ + LP+++S CP W + EK+ +I + S+ KSPQQ +G
Sbjct: 279 ASEFVERFAHKR--------GPLPLITSCCPSWTDHMEKRHYDFIDNF-STAKSPQQMLG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
K + QK G P +++ V++MPC KK ++L EE + +VD
Sbjct: 330 VLAKTYYAQKAGVDPSKLFMVSIMPCTAKK---------YELSRTEEMHAS---GFADVD 377
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
VLTT E+ +++ + F AL ++ D +L + G ++ G++GG E R A
Sbjct: 378 VVLTTRELARMLKQSGIEFLALPDAEPDSILGSYSGAGTIF---GATGGVMEAAVRTAYH 434
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVK-MRKCD 311
GK ++ ++E +R + +E +++ G ++ A+ +G N++ ++ +V+ RK
Sbjct: 435 YATGKKLK-NVELTAVRGLAGVKEGEIDINGAK-VRVAVAHGLANVEQVLERVREARKAG 492
Query: 312 ----YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLV 365
Y F+EVMACP GC+ GGGQ G + +K + +Y + + + +NP V
Sbjct: 493 KETPYHFIEVMACPGGCIGGGGQ---PYGVDNERRMKRIAGLYQDDRDRTVRYSHENPEV 549
Query: 366 RSLYDEWLEQPGSEKAKKHVHTEY 389
+Y ++L +P S KA + +HT Y
Sbjct: 550 VQVYRDFLGKPLSGKAHELLHTRY 573
>gi|117919163|ref|YP_868355.1| response regulator receiver protein [Shewanella sp. ANA-3]
gi|117611495|gb|ABK46949.1| response regulator receiver protein [Shewanella sp. ANA-3]
Length = 410
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 170/327 (51%), Gaps = 23/327 (7%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K V+ ++P R ++ E FG+ + V KL + G K IFD + + DLT++E
Sbjct: 83 DKNTTVVGIIAPAVRVAIGEEFGLGTGELVTGKLYGAMNQAGFK-IFDCNFAADLTIMEE 141
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EFI R + + E + +LP +S CPGW+ Y E + + +LP +S+ KSPQQ G
Sbjct: 142 GSEFIHRLHANVKG--EENAGALPQFTSCCPGWVRYLETRYPA-LLPNLSTAKSPQQMAG 198
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP--- 190
K + + +P+ I+ V+VMPC KKLEA+R +F +S + ++++G P
Sbjct: 199 TVAKTYGAKVYQMQPENIFTVSVMPCTSKKLEASRPEF----NSAWQYHQEQGANTPSYQ 254
Query: 191 EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH 250
++D+VLTT E+ L+++ ++ E D M + G ++ G++GG E R
Sbjct: 255 DIDAVLTTREMAQLLKMLDIDLANTPEYQGDSMFSEYTGAGTIF---GTTGGVMEAALRT 311
Query: 251 AAKTLFGKVIEGHLEF------KTIRNSDFREVALEVEGKTLLKFALCYGF-QNLQNIVR 303
A K L G + LEF K ++++ ++ + A+ + N++ ++R
Sbjct: 312 AHKVLTGTEM-AKLEFEPVRGLKGVKSASVSLFDTQLNQNVTVNVAVVHDMGNNIEPVLR 370
Query: 304 KVKMRKCDYQFVEVMACPSGCLNGGGQ 330
V Y F+EVM C GC+NGGGQ
Sbjct: 371 DVMAGTSPYHFIEVMNCAGGCVNGGGQ 397
>gi|164688084|ref|ZP_02212112.1| hypothetical protein CLOBAR_01729 [Clostridium bartlettii DSM
16795]
gi|164602497|gb|EDQ95962.1| hydrogenase, Fe-only [Clostridium bartlettii DSM 16795]
Length = 598
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 113/400 (28%), Positives = 194/400 (48%), Gaps = 39/400 (9%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
+LEK + DE + K K V++ ++P R ++E FG+ P + K+ LK+LG
Sbjct: 209 LLEKDNTDEAWGLLAQKEKPVMVQIAPAVRVGISEEFGLKPGTISTGKVVAALKALGFDY 268
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ + DLT++E NEF+ R + + LP+++S CP W+ + E Q +
Sbjct: 269 VFDTNFAADLTIMEEANEFVNRLTKGGD---------LPIMTSCCPAWVNFCESQYPD-L 318
Query: 119 LPYISSVKSPQQTIGATIKHHICQK-LGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
Y+S+ +SPQ +++ K L +PDE+ V++MPC KK E RE+
Sbjct: 319 TKYLSTCRSPQSMFSPIARYYFADKVLDKKPDEVSVVSIMPCVAKKYEVKREEL-----G 373
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
Q+ I + D LT E+ +I+ ++ E LEE D L ++GV
Sbjct: 374 QDG--------IIDTDLSLTVRELARMIKSAGIDLENLEEENFDSPLGYSTGAADIFGV- 424
Query: 238 GSSGGYAETVFRHAAKTLFGKVI-EGHLEFKTIRNSD-FREVALEVEG---KTLLKFALC 292
+GG E R A + + + + +EFK +R + +E + + G + +L
Sbjct: 425 --TGGVLEAALRTAYTDVTKEELPDDGIEFKAVRGFEGIKEATINIAGIDVNVVAASSLG 482
Query: 293 YGFQNLQNIVRKVKMRKC-DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL 351
+ + + + K Y +E+MACP GC+NGGGQ P +++ +Y+
Sbjct: 483 CARKLMDELRADIAAGKTPKYHIIEIMACPGGCVNGGGQ--PFTNGDYEKVKARGAGLYI 540
Query: 352 --ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+N + +N ++ LYDE+L + G A K++HT Y
Sbjct: 541 IDKNKLQRKSHENEDIKKLYDEFLGERGGHNAHKYLHTHY 580
>gi|170289108|ref|YP_001739346.1| hydrogenase large subunit [Thermotoga sp. RQ2]
gi|170176611|gb|ACB09663.1| hydrogenase large subunit domain protein [Thermotoga sp. RQ2]
Length = 645
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 119/395 (30%), Positives = 194/395 (49%), Gaps = 55/395 (13%)
Query: 4 KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDT 62
+ +D+ + + K VI ++P RA++ E FGI + + +KL +FLK++G +FD
Sbjct: 204 RNDIDKLIEALESDKIVIGMIAPAVRAAIQEEFGIDEDVAMAEKLVSFLKTIGFDRVFDV 263
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
S DL E +EF R K+ + LP +S CP W+ +AE Y L +
Sbjct: 264 SFGADLVAYEEAHEFYERLKKGER---------LPQFTSCCPAWVKHAEHTYPQY-LQNL 313
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
SSVKSPQQ +G IK +KLG ++I+ V+ MPC KK EA RE+
Sbjct: 314 SSVKSPQQALGTVIKKIYARKLGVPEEKIFLVSFMPCTAKKFEAEREEH----------- 362
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSG- 241
+G+ VD VLTT E+ LI++ ++ +E P D+ YGV+ +G
Sbjct: 363 --KGI----VDIVLTTRELAQLIKMSRIDINRIEPQPFDRP----------YGVSSQAGL 406
Query: 242 --GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQ 299
G A VF L ++ ++ K+ + R + ++ T K A+ YG ++
Sbjct: 407 GFGKAGGVFSCVLSVLNEEIGIEKVDVKSPEDG-IRVAEVTLKDGTSFKGAVIYGLGKVK 465
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL-ETIYLENVMLAD 358
+ + K D + +EVMAC GC+ GGGQ P + + K L +T+ +++++
Sbjct: 466 KFLEERK----DVEIIEVMACNYGCVGGGGQPYPNDSRIREHRAKVLRDTMGIKSLLT-- 519
Query: 359 PFKNPLVRSLYDEWLEQPGSEKAKKH--VHTEYHP 391
P +N + LY+E L+ ++ +H +HT Y P
Sbjct: 520 PVENLFLMKLYEEDLK----DEHTRHEILHTTYRP 550
>gi|345858375|ref|ZP_08810769.1| hydrogenase family protein [Desulfosporosinus sp. OT]
gi|344328569|gb|EGW39953.1| hydrogenase family protein [Desulfosporosinus sp. OT]
Length = 580
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 188/374 (50%), Gaps = 33/374 (8%)
Query: 20 VIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
V++ +P R +L E FG+ P + K+ L+ LG +FDT + D+T++E +E +
Sbjct: 230 VVVQTAPAVRVALGEGFGLEPGTIVTGKMVAALRRLGFDRVFDTDFAADVTIMEEASELV 289
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
R K LP+L+S CP W+ + E Q +L S+ KSP Q +G K
Sbjct: 290 HRLKH---------GGRLPILTSCCPAWVKFFEHQFPD-LLDIPSTCKSPHQMLGVLTKS 339
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ + G P +I V++MPC KK EAAR + Q+ P+VD V+TT
Sbjct: 340 YYAKTYGIDPQKITVVSIMPCIAKKYEAARPEL-----GQDSV-------TPDVDIVITT 387
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ +I+ ++F L++ D L ++G ++GG E R A + L G+
Sbjct: 388 RELARMIREAGIHFTNLKDEEFDHPLGESTGAAVIFG---TTGGVLEAALRTAYEVLTGE 444
Query: 259 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
+E +EF+ +R D +E + + G+ + A+ +G + + I+ K++ + Y +E+
Sbjct: 445 TLE-KVEFEALRGMDGIKEAVIPIAGRDF-RVAVTHGLGHARYILEKIQTGEAHYDAIEI 502
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLEQ 375
MACP GC+ GGGQ P + + L IY E+ L +NP V +LY +++ +
Sbjct: 503 MACPGGCIGGGGQ--PYHHGNVEILKARANAIYQEDRSKPLRKSHENPAVLALYKDFIGE 560
Query: 376 PGSEKAKKHVHTEY 389
P EKA + +HT Y
Sbjct: 561 PYGEKAHELLHTSY 574
>gi|310779017|ref|YP_003967350.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Ilyobacter polytropus DSM 2926]
gi|309748340|gb|ADO83002.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Ilyobacter polytropus DSM 2926]
Length = 640
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 126/411 (30%), Positives = 195/411 (47%), Gaps = 54/411 (13%)
Query: 16 KGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
+GK V+I +P RA + E FG+ P + K+ T L+ G +FDT + DLT+IE
Sbjct: 253 EGKHVVIQTAPAPRAGIGEEFGLEPGTPMTLKMNTALRRCGFHKVFDTCFTADLTIIEEG 312
Query: 75 NEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
E + R + E D ++ LP+ +S PGW+ Y E +I +S+ KSPQQ G
Sbjct: 313 TELVKRLYDNIEGD---GHTKLPVFTSCSPGWVKYLEHFFPEFI-ENLSTAKSPQQMFGT 368
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDS 194
IK + +K P++I V +MPC KK EA R + + YRD VD
Sbjct: 369 IIKTYYAEKNNINPEDIVTVALMPCTAKKYEAGRPEMC------QSGYRD-------VDY 415
Query: 195 VLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKT 254
+TT E+ + + ++ +E+S D T G ++ G++GG E+ R +
Sbjct: 416 GITTREMAKMFKETGIDLPNIEDSDFDDPFTGGSGSGVIF---GATGGVMESAIRTLYEL 472
Query: 255 LFGKVIEGHLEFKTIRN----SDFREVALEVEGKT-------------------LLKFAL 291
+ G+ ++ E+ I+ D + + L+++ T LK A+
Sbjct: 473 VTGEKVDSLFEYGDIKPVRGFEDIKSLELKIDKVTEVPELLKGQLNSFEFLKNQTLKVAI 532
Query: 292 CYGFQNLQNIVRKVKMRK--CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLET 348
C+G N + ++ +K Y F+E MACP GCL GGGQ P + +E+ IK
Sbjct: 533 CHGTSNAKRVLEDIKNGGEFSTYHFIEFMACPGGCLGGGGQ----PIPTNEEIRIKRANA 588
Query: 349 IYLEN--VMLADPFKNPLVRSLYDEWL-EQPGSEKAKKHVHTEYHPVVKSI 396
IY E+ + ++NP V LY + E PG EKA K +HT Y K I
Sbjct: 589 IYSEDKKASVRKSYENPGVLELYKNFFKEGPGKEKAHKLLHTHYKKRGKEI 639
>gi|451820121|ref|YP_007456322.1| NADP-reducing hydrogenase subunit HndC [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451786100|gb|AGF57068.1| NADP-reducing hydrogenase subunit HndC [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 587
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 188/375 (50%), Gaps = 28/375 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K ++ ++P RA+ E G++ + +L + L+ +G IFDT+ S DLT++E NE
Sbjct: 221 KITVVQIAPAVRAAWGEALGLTREEATVNRLVSALRRMGFNYIFDTNFSADLTIMEEGNE 280
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
FI R + N+ PM +S CPGW+ + + Q + +S+ KSPQQ GA
Sbjct: 281 FIERISN-------KENNIFPMFTSCCPGWVRFLKSQYPDMV-EQLSTAKSPQQMFGAVA 332
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + + L P +I+ ++VMPC KK EA + D G +VD VL
Sbjct: 333 KSYYAKILNVDPSKIFSISVMPCVAKKHEA-----------EIPVMNDAGAG-QDVDLVL 380
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ + + + L+E D L G ++G S+GG E R A +
Sbjct: 381 TTREIERMIRAEHIICKDLKEEEFDMPLGVSSGAGVIFG---STGGVMEAALRSAHFIIT 437
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
GK + FK +R S +E E+ G ++ K A+ G N + +V+ ++ K Y FV
Sbjct: 438 GKNPDPD-AFKEVRISGGIKEAVFEIAGSSI-KVAVVSGLGNARKLVKAIRKGKAHYDFV 495
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQ 375
EVMACP GC GGGQ + KE L + + L +NP + LY +++E+
Sbjct: 496 EVMACPGGCSGGGGQPIADGLELGKERADNLYKLD-KKAELRFSHENPSIIQLYADYMEK 554
Query: 376 PGSEKAKKHVHTEYH 390
P S KA K +HT+++
Sbjct: 555 PLSHKAHKLLHTDHN 569
>gi|402574701|ref|YP_006624044.1| hydrogenase, Fe-only [Desulfosporosinus meridiei DSM 13257]
gi|402255898|gb|AFQ46173.1| hydrogenase, Fe-only [Desulfosporosinus meridiei DSM 13257]
Length = 580
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 195/396 (49%), Gaps = 38/396 (9%)
Query: 1 MLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
++E +D+ +N + VI+ +P R +L E FG+ P + ++ L+ LG
Sbjct: 210 LMELDQVDKVWKALNDPTRYVIVETAPAVRVALGEGFGLEPGTIVTGRMVAALRRLGFDR 269
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT D+T++E E I R + LP+L+S CP W+ + E Q +
Sbjct: 270 VFDTEFGADVTIMEEATELIHRIEH---------GGRLPILTSCCPAWVKFFEHQFPD-L 319
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ KSP Q +G K + + G P +I V++MPC KK EAAR + Q
Sbjct: 320 LDIPSTCKSPHQMLGVLSKSYYAETYGIDPQKITVVSIMPCIAKKYEAARPEL-----GQ 374
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA- 237
+ P+VD V+TT E+ +I+ ++F+ L+E D L G G A
Sbjct: 375 DPV-------TPDVDIVITTRELSRMIREAGIHFDHLKEEDFDHPL------GESTGAAV 421
Query: 238 --GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGF 295
G++GG E R A + L GK +E ++EF+ +R D + A+ G+ + A+ +G
Sbjct: 422 VFGTTGGVIEAALRTAYEWLTGKPLE-NVEFEPLRGMDGIKEAIIPIGERDFRIAVTHGL 480
Query: 296 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM 355
N + I+ K++ + Y +E+MACP GC+ GGGQ P + L IY E+
Sbjct: 481 GNARTILEKIQSGESHYDAIEIMACPGGCIGGGGQ--PYHHGNLAILEARANAIYQEDRS 538
Query: 356 --LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP V LY +++ +P EKA + +HT +
Sbjct: 539 KPLRKSHENPAVLKLYRDYIGEPYGEKAHRLLHTSF 574
>gi|217966958|ref|YP_002352464.1| hydrogenase, Fe-only [Dictyoglomus turgidum DSM 6724]
gi|217336057|gb|ACK41850.1| hydrogenase, Fe-only [Dictyoglomus turgidum DSM 6724]
Length = 666
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 112/369 (30%), Positives = 183/369 (49%), Gaps = 37/369 (10%)
Query: 24 LSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYK 82
++P R+++ E F + S L + +L TFLK LG +F+ DL E +EF+ R +
Sbjct: 226 IAPAVRSAIQEEFKLESDLFIAGRLNTFLKMLGFSKVFEVPFGADLVAYEEAHEFLNRLE 285
Query: 83 QSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQ 142
+ ++ LP +S CP W+ Y E+ SYI +S+V+SPQQ +G+ IK +
Sbjct: 286 KGEK---------LPQFTSCCPAWVKYVEEFYPSYI-DNLSTVRSPQQAMGSVIKEIYSK 335
Query: 143 KLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVL 202
++G ++IY V++MPC KK EA RE+ +G+ VD V+TT E+
Sbjct: 336 EIGVSKEDIYLVSIMPCTAKKFEAEREEH-------------KGV----VDLVITTKELA 378
Query: 203 DLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEG 262
+I+ ++ + + P DK G +G G G V H K V E
Sbjct: 379 QMIKASGIDISSTKPEPFDKPFNLYSQGGLDFGKTGGVLGTVLAVINHKVKV--KNVKEE 436
Query: 263 HLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPS 322
++ K IR + E+A +G+ + A+ + + +++ +K D +EVMAC
Sbjct: 437 EID-KGIRLFNV-ELA---DGRNIKAMAV-HSLGKAKRVLKDIKEGILDVDIIEVMACSF 490
Query: 323 GCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAK 382
GC+ GGGQ P + ++ K L + N +A P +NP + LY+++LE P S K
Sbjct: 491 GCIGGGGQPYPNDSKIRQKRAKILSDMVNIN-PIASPQENPYLMELYEKYLEHPLSHKTH 549
Query: 383 KHVHTEYHP 391
+ +HT Y P
Sbjct: 550 EILHTSYSP 558
>gi|365874538|ref|ZP_09414071.1| hydrogenase, Fe-only [Thermanaerovibrio velox DSM 12556]
gi|363984625|gb|EHM10832.1| hydrogenase, Fe-only [Thermanaerovibrio velox DSM 12556]
Length = 585
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 195/377 (51%), Gaps = 29/377 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ +P RA+L E FG+ P V K+ L+ +G +FDT + DLT++E +E
Sbjct: 227 KVVVVQTAPAVRAALGEEFGLEPGTLVTGKMVAALRQMGFDYVFDTDFAADLTIMEEASE 286
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ R + D + +P+L+S CP W+ + E Q +L SS KSPQQ GA
Sbjct: 287 FLDRLNRFLAGD---KDVRMPILTSCCPAWVKFFEHQF-PELLDVPSSAKSPQQMFGAVA 342
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K+ +KLG +++ V+VMPC KK EA+R +F + P+VD +
Sbjct: 343 KNFFAKKLGIPREKLVVVSVMPCLAKKYEASRPEFSENGN-------------PDVDISI 389
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
+T E+ LI+ ++F +LE+ D+ L G ++ G++GG E R A +
Sbjct: 390 STRELAHLIKRSNIDFMSLEDQDFDRPLGESTGAGVIF---GTTGGVIEAAVRTAVEWAT 446
Query: 257 GKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD-YQF 314
K +E ++F +R RE ++V G L + +G N +++++ +K + + +
Sbjct: 447 KKPLE-KIDFTELRGMQGCREAWVQV-GDLKLHIGIAHGLGNARHLLQAIKEGRGEMFHA 504
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEW 372
+E+MACP GC+ GGGQ P + + K E +Y E+ + +NP + LY+E+
Sbjct: 505 IEIMACPGGCVGGGGQ--PYHHGNFDIVRKRAEALYREDAGKPIRKSHENPEIIKLYEEF 562
Query: 373 LEQPGSEKAKKHVHTEY 389
L +P SE A +HT Y
Sbjct: 563 LGKPMSETAHHLLHTHY 579
>gi|423212935|ref|ZP_17199464.1| hydrogenase, Fe-only [Bacteroides xylanisolvens CL03T12C04]
gi|392694191|gb|EIY87419.1| hydrogenase, Fe-only [Bacteroides xylanisolvens CL03T12C04]
Length = 588
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 198/394 (50%), Gaps = 29/394 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ E+ + L ++ N K VI+ +P RA+L E FG P V K+ L+ LG
Sbjct: 213 LTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTLVTGKMVYALRELGFDY 272
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E +E + R + D + LP+L+S CP W+ + E +
Sbjct: 273 VFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSCCPAWVNFFEHHFPD-M 328
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ +SPQQ G+ K + +K+G +++ V++MPC KK E AR++F
Sbjct: 329 LDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAKKYECARDEFKVN---- 384
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
IP+VD ++T E+ LI+ + F + +SP D + G ++ G
Sbjct: 385 ---------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDNPMGESTGAGVIF---G 432
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R + G+ ++ ++ F+ +R + R + + G LK + +G N
Sbjct: 433 TTGGVMEAALRSVYEIYTGESLK-NVNFEQVRGLNGVRRATINLNGFE-LKVGIAHGLGN 490
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVM 355
++++ ++ +Y +E+MACP GC+ GGGQ P + + L +Y E N
Sbjct: 491 ARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEILYARANALYREDANKP 548
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP +++LY+E+L +P E ++ +HT Y
Sbjct: 549 LRKSHENPYIKTLYEEYLGKPLGEISETLLHTHY 582
>gi|423222762|ref|ZP_17209232.1| hydrogenase, Fe-only [Bacteroides cellulosilyticus CL02T12C19]
gi|392641126|gb|EIY34912.1| hydrogenase, Fe-only [Bacteroides cellulosilyticus CL02T12C19]
Length = 587
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 200/394 (50%), Gaps = 29/394 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKS 58
+ E+ + L ++ N K VI+ +P RA+L E FG+ + V K+ L+ LG
Sbjct: 213 LTERDHTNRLLLDLENPDKVVIVQTAPAVRAALGEEFGLPAGTLVTGKMVYALRELGFDY 272
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E E + R + D + LP+L+S CP W+ + E +
Sbjct: 273 VFDTDFAADLTIMEEGAEILNRLTRYMNGD---KSVRLPILTSCCPAWVNFFEHHFPD-M 328
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ +SPQQ G+ K +K+G +++ V++MPC KK E R +F + D
Sbjct: 329 LDIPSTARSPQQMFGSIAKTFWAEKMGIPREKLVVVSIMPCLAKKYECDRNEF--KTDGS 386
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
P+VD ++T E+ LI+ V F L + D+ + G ++G
Sbjct: 387 -----------PDVDYSISTRELARLIRRANVGFTLLTDKEFDQPMGASTGAGVIFG--- 432
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R + G+ +E ++ F+ +R + R ++++G L K + +G N
Sbjct: 433 TTGGVMEAALRSVYEIYTGRTLE-NVNFEQVRGLAGVRRATIDLDGFEL-KVGIAHGLGN 490
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM-- 355
++++ ++ + +Y +E+MACP GC+ GGGQ P + + L +Y E+
Sbjct: 491 ARHLLEDIRHGRNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEVLYARANALYREDAQKP 548
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP +++LY+E+L +P SE A++ +HT Y
Sbjct: 549 LRKSHENPYIKTLYEEYLGRPLSETAERLLHTHY 582
>gi|255527517|ref|ZP_05394385.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7]
gi|255508787|gb|EET85159.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7]
Length = 426
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 161/321 (50%), Gaps = 32/321 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVF--KKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
NK ++ +P R ++E FG+ PL KK+ L+ LG ++DT+ S DLT++E
Sbjct: 104 NKDLFKVVQCAPAVRVGISEDFGL-PLGTLNPKKMAAALRKLGFDRVYDTNFSADLTIME 162
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
+E I R + +LPM +S CP W+ Y E Q +L ++S+ KSPQQ
Sbjct: 163 EGSELIERVTK---------GGTLPMFTSCCPAWVKYLE-QTYPELLDHLSTCKSPQQMA 212
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
GA K + + P ++ V+VMPC K E+ RE+ ++ YRD V
Sbjct: 213 GAIFKTYGAKINNVNPAKMLSVSVMPCTCKDFESGREEM------KDSGYRD-------V 259
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D V+TT E+ LI+ ++F+ LEE D L G ++G ++GG E R
Sbjct: 260 DLVITTRELAYLIKDSGIDFKELEEEEFDDPLGMYTGAGTIFG---ATGGVMEAALRTGY 316
Query: 253 KTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
+ + K I ++ +R + FR ++V G LK + G +N ++ +K +CD
Sbjct: 317 ELITKKQIP-SVDLSAVRGGEGFRTAEVQV-GDLKLKVGIVSGLKNAAPVLESIKKGECD 374
Query: 312 YQFVEVMACPSGCLNGGGQIK 332
F+E M CP GC++GGGQ K
Sbjct: 375 LHFIEFMTCPIGCVSGGGQPK 395
>gi|355674711|ref|ZP_09059705.1| hypothetical protein HMPREF9469_02742 [Clostridium citroniae
WAL-17108]
gi|354813812|gb|EHE98417.1| hypothetical protein HMPREF9469_02742 [Clostridium citroniae
WAL-17108]
Length = 598
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 182/377 (48%), Gaps = 35/377 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+ GK V++ ++P RA+L E FG+ V K+ T L +G +FDT S DLT++E
Sbjct: 218 DPGKRVVVQVAPAVRAALGEEFGLPVGTPVTGKMATALHEIGFDDVFDTLFSADLTILEE 277
Query: 74 CNEFIARYKQSQESDDERSN-SSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
E + R + DD + ++LPM++S PGWI + E Q L ++S+ KSP +
Sbjct: 278 GTELLGRLNAVLKGDDNKEGPTALPMITSCSPGWIKHIEHQFPEE-LDHLSTCKSPHTML 336
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
GA +K ++ G P +++ V+VMPC KK E R + ++D + RD V
Sbjct: 337 GAVVKSFYAERTGTDPKDMFVVSVMPCTAKKYEIQRPEM--EVDGR----RD-------V 383
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D+VLTT E+ +I+ ++F L E D L ++GV +GG E R
Sbjct: 384 DAVLTTRELARMIKKAGLDFVNLPEGEFDSPLGLGTGAADIFGV---TGGVMEAALRTVY 440
Query: 253 KTLFGK----------VIEGHLEFKTIRNSDFREVALEVEGK---TLLKFALCYGFQNLQ 299
+ + G+ I G + KT S E L V G + A+ G +
Sbjct: 441 EVVTGRELPFEKLHVTPIVGLDQVKTA--SITIEEPLPVYGHLNGVTVNVAVTSGLEGAS 498
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADP 359
++ +V Y F+EVM CP GC+NGGGQ + ++ K L + E +L
Sbjct: 499 KLMEEVAAGTSPYHFIEVMGCPGGCINGGGQPRCTEENYREKRSKALYS-EDERKVLRKS 557
Query: 360 FKNPLVRSLYDEWLEQP 376
+NP + LY+E+L +P
Sbjct: 558 HENPDLMKLYNEYLGEP 574
>gi|345570856|gb|EGX53675.1| hypothetical protein AOL_s00006g65 [Arthrobotrys oligospora ATCC
24927]
Length = 592
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 125/377 (33%), Positives = 184/377 (48%), Gaps = 77/377 (20%)
Query: 15 NKGKAVII-SLSPQSRASLAEHFGISPLQVFKKLTTFL-------KSLGVKSIFDTSCSR 66
NK K + + S+SPQ+RASLA G S ++ + L G + DT+
Sbjct: 118 NKRKRIFVASVSPQTRASLAAAMGRSTNEIGHMIDRLLLESISSNGKRGFDYVLDTA--- 174
Query: 67 DLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVK 126
+ C A+ ++ LP+L+S CPG++CY EK + +LP++S +K
Sbjct: 175 --PFLSVCLHLAAQELADSLANRSEKTPKLPILTSECPGFVCYLEKTHPA-VLPHLSRLK 231
Query: 127 SPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEG 186
SPQ +G +K + + +G D +YHV VMPC+DKKLEA+R + + T++D
Sbjct: 232 SPQALLGTLLKSLLPRYIGDDID-VYHVAVMPCFDKKLEASRAELT------DATWKDVD 284
Query: 187 LEIP---EVDSVLTTGEVLDLIQLKAVNFEALEESPL-DKML-------------TNVDD 229
+I +VD V+TT E+L L + V+F L L +KML N+ D
Sbjct: 285 QDITPTRDVDCVITTRELLQLADFRDVDFSTLSPKALPNKMLPPIPALQTFLLGARNLKD 344
Query: 230 EGHLYGVAGSSGGYAETVFRH-AAKTLFGKVIEGHLEFKTIRNSDFRE-VALEVEGKT-L 286
E L G+SGGY ++ + +K K+IE K RNSD E + L +G+T +
Sbjct: 345 EQSLGLQVGTSGGYLVSIMQELQSKHTGSKIIE-----KKGRNSDVMEFILLSADGETEI 399
Query: 287 LKFALCYGFQNLQNIVRKVKMRK-------------------------------CDYQFV 315
LK A YGF+N+QN+VRK+K K +Y +
Sbjct: 400 LKMARFYGFRNIQNLVRKLKPAKLRMLPGGAARKVVGKTARAPTARAGTSSSVGSEYCYA 459
Query: 316 EVMACPSGCLNGGGQIK 332
EVMACP GC NGGGQ+K
Sbjct: 460 EVMACPGGCTNGGGQLK 476
>gi|237722431|ref|ZP_04552912.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_2_4]
gi|229448241|gb|EEO54032.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_2_4]
Length = 588
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 198/394 (50%), Gaps = 29/394 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ E+ + L ++ N K VI+ +P RA+L E FG P V K+ L+ LG
Sbjct: 213 LTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTLVTGKMVYALRELGFDY 272
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E +E + R + D + LP+L+S CP W+ + E +
Sbjct: 273 VFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSCCPAWVNFFEHHFPD-M 328
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ +SPQQ G+ K + +K+G +++ V++MPC KK E AR++F
Sbjct: 329 LDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAKKYECARDEFKVN---- 384
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
IP+VD ++T E+ LI+ + F + +SP D + G ++ G
Sbjct: 385 ---------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDNPMGESTGAGVIF---G 432
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R + G+ ++ ++ F+ +R + R + + G LK + +G N
Sbjct: 433 TTGGVMEAALRSVYEIYTGESLK-NVNFEQVRGLNGVRRATINLNGFE-LKVGIAHGLGN 490
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVM 355
++++ ++ +Y +E+MACP GC+ GGGQ P + + L +Y E N
Sbjct: 491 ARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEILYARANALYREDANKP 548
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP +++LY+E+L +P E ++ +HT Y
Sbjct: 549 LRKSHENPYIKTLYEEYLGKPLGEISETLLHTHY 582
>gi|37911254|gb|AAR04930.1| iron-hydrogenase HydA2 [Chlamydomonas reinhardtii]
Length = 505
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 126/443 (28%), Positives = 207/443 (46%), Gaps = 72/443 (16%)
Query: 4 KQSLDEFLSNINKGKAVIIS-LSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFD 61
K +L+E + G+ V+I+ ++P R ++AE FG++P V KL L++LG +FD
Sbjct: 73 KLALEELDKPKDGGRKVLIAQVAPAVRVAIAESFGLAPGAVSPGKLAAGLRALGFDQVFD 132
Query: 62 TSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY--IL 119
T + DLT++E E + R K+ E+ S+ LPM +S CPGW+ EK SY ++
Sbjct: 133 TLFAADLTIMEEGTELLHRLKEHLEAH-PHSDEPLPMFTSCCPGWVAMMEK---SYPELI 188
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAARE---------- 169
P++SS KSPQ +GA +K ++ +K G +I V+VMPC K+ A RE
Sbjct: 189 PFVSSCKSPQMMMGAMVKTYLSEKQGIPAKDIVMVSVMPCVRKQGVADREWFCVSEPGVR 248
Query: 170 --DFVFQLDSQEETYRDEGLEIPEV-----DSVL-----------TTGEVLDLIQLKAVN 211
D V +++ G+ +PE+ D L TTG V++ A
Sbjct: 249 DVDHVITTAELGNIFKERGIILPELPDSDWDQPLGLGSGAGVLFGTTGGVMEAAVRTA-- 306
Query: 212 FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN 271
+E + + PL ++ N+ + L G+ +S A + F +++ L K
Sbjct: 307 YEIVTKEPLPRL--NLSEVRGLDGIKEAS-----VTLVPAPGSKFAELVAARLAHKVEEA 359
Query: 272 SDFREVAL--------------------EVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
+ A + +G L+ A+ G N + ++ K+ +
Sbjct: 360 AAAEAAAAVEGAVKPPIAYDGGQGFSTDDGKGGLKLRVAVANGLGNAKKLIGKMVSGEAK 419
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL---ENVMLADPFKNPLVRSL 368
Y FVE+MACP+GC+ GGGQ P + K++ + + E L +N V L
Sbjct: 420 YDFVEIMACPAGCVGGGGQ----PRSTDKQITQKRQAALYDLDERNTLRRSHENEAVNQL 475
Query: 369 YDEWLEQPGSEKAKKHVHTEYHP 391
Y E+L +P S +A + +HT Y P
Sbjct: 476 YKEFLGEPLSHRAHELLHTHYVP 498
>gi|423287866|ref|ZP_17266717.1| hydrogenase, Fe-only [Bacteroides ovatus CL02T12C04]
gi|392671881|gb|EIY65352.1| hydrogenase, Fe-only [Bacteroides ovatus CL02T12C04]
Length = 588
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 198/394 (50%), Gaps = 29/394 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ E+ + L ++ N K VI+ +P RA+L E FG P V K+ L+ LG
Sbjct: 213 LTERDYTNRLLDDLANPDKVVIVQTAPAVRAALGEEFGFPPGTLVTGKMVYALRELGFDY 272
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E +E + R + D + LP+L+S CP W+ + E +
Sbjct: 273 VFDTDFAADLTIMEEGSEILNRLTRYLNGD---KSVRLPILTSCCPAWVNFFEHHFPD-M 328
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ +SPQQ G+ K + +K+G +++ V++MPC KK E AR++F
Sbjct: 329 LDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAKKYECARDEFKVN---- 384
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
IP+VD ++T E+ LI+ + F + +SP D + G ++ G
Sbjct: 385 ---------GIPDVDYSISTRELARLIKRANIGFPLVLDSPFDNPMGESTGAGVIF---G 432
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R + G+ ++ ++ F+ +R + R + + G LK + +G N
Sbjct: 433 TTGGVMEAALRSVYEIYTGESLK-NVNFEQVRGLNGVRRATINLNGFE-LKVGIAHGLGN 490
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVM 355
++++ ++ +Y +E+MACP GC+ GGGQ P + + L +Y E N
Sbjct: 491 ARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEILYARANALYREDTNKP 548
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP +++LY+E+L +P E ++ +HT Y
Sbjct: 549 LRKSHENPYIKTLYEEYLGKPLGEISETLLHTHY 582
>gi|300121909|emb|CBK22483.2| unnamed protein product [Blastocystis hominis]
Length = 543
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 146/261 (55%), Gaps = 46/261 (17%)
Query: 97 PMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLG--FRPDEIYHV 154
P ++S CPGW+CYAEK+ + ++P++S+ KS QQ +G+ ++ + + +IY
Sbjct: 239 PFITSNCPGWVCYAEKKTHA-LVPFLSTTKSAQQIMGSLLRKMLPTLTNEPIQSQDIYIA 297
Query: 155 TVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVN--- 211
+V+ CYD+KLEA+R DF+ + I E+D VL T E+ +L++ A +
Sbjct: 298 SVVSCYDRKLEASRRDFM------------DPAGIHEIDCVLATQEIAELLEKPAPSAPS 345
Query: 212 -----------FEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVF------RHAAKT 254
+EA+E T DD V SSGG +++ R AA+
Sbjct: 346 APVRVWWDEKRWEAMESG----CRTAFDD------VLMSSGGVLQSLLKFELLSRPAARL 395
Query: 255 LFGKVIEGHLE-FKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
+F +E ++ +T+RNSDF E ++ V + + + A YGF+N+QN+ K+K KC Y
Sbjct: 396 VFALFVENSMKRTRTVRNSDFVESSVCVGEEIVFRGAFIYGFRNIQNLAMKIKRGKCVYD 455
Query: 314 FVEVMACPSGCLNGGGQIKPK 334
VEVMACPSGCLNGGGQI+P+
Sbjct: 456 AVEVMACPSGCLNGGGQIRPE 476
>gi|327194990|gb|AEA34989.1| [FeFe]-hydrogenase [Chlorella variabilis]
Length = 717
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 122/415 (29%), Positives = 200/415 (48%), Gaps = 63/415 (15%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
NK K +++ +P R S+ E G++P V ++ ++LG +FD+ S DLT++E
Sbjct: 279 NKQKVMVVQTAPSVRVSIGEELGLAPGTVETGQMVAAQRALGFDYVFDSDFSADLTIMEE 338
Query: 74 CNEFIARY---------------------KQSQESDDERSNSS--LPMLSSACPGWICYA 110
E + R KQ + ++ LPM +S CP WI
Sbjct: 339 GTELLQRLGAAWRAETAAQDAAAGSWAAAKQGHGEGEAHGHAPGPLPMFTSCCPAWINLV 398
Query: 111 EKQLGSY--ILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAR 168
EK SY ++P++SS KSPQ +GA +KH+ +K G +P+++ V +MPC KK E R
Sbjct: 399 EK---SYPELIPHLSSCKSPQMMMGAVVKHYWAKKKGLKPEDVCLVGIMPCTAKKHETER 455
Query: 169 EDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVD 228
++F R+E + D V+TT E +++ K + +L+ D L
Sbjct: 456 KEF-----------RNENGAY-DCDYVITTREFGHMLRHKKIPMPSLKPEEFDNPLGEAT 503
Query: 229 DEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALE------- 280
L+ G++GG E R A + G+ + LE + +R +E L
Sbjct: 504 GAAALF---GATGGVMEAAIRTAYEIAAGEPLP-KLEVEAVRGVKGVKEATLTLPANDTT 559
Query: 281 ----VEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPG 336
V GK ++ A+ G N ++++++++ + Y FVEVMACP GC+ GGGQ K
Sbjct: 560 LKAGVAGKE-IRVAVASGIGNARHLLQRIQAGEAHYDFVEVMACPGGCIGGGGQPKT--- 615
Query: 337 QSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
P ++K + IY +++ L +NP + +Y E+L QPG E + K +HT Y
Sbjct: 616 HDPDAVLKRMGAIYQVDKSLALRKSHENPSIHKIYAEFLGQPGGELSHKLLHTHY 670
>gi|74229867|gb|ABA00462.1| Fe-hydrogenase large subunit, partial [Ethanoligenens harbinense
YUAN-3]
Length = 347
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 156/308 (50%), Gaps = 27/308 (8%)
Query: 20 VIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
++ ++P RA+ E G+ Q K+L L+ +G + IFDT+ S DLT++E +EF+
Sbjct: 65 TVVQIAPAVRAAWGESLGLPREQATAKRLVAALRKIGFRYIFDTTFSADLTIMEEGSEFL 124
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
A+ + R N + PM +S CPGW+ + + Q + +S+ KSPQQ GA K
Sbjct: 125 AKLRN-------RENETFPMFTSCCPGWVRFLKSQYPDMVR-QLSTAKSPQQMFGAITKS 176
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ + L P+ I ++VMPC KK EAA D P+VD VLTT
Sbjct: 177 YYAKLLDVEPERICSISVMPCLAKKQEAALPTM------------DTAGAGPDVDIVLTT 224
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
E+ +I+ + ++ L E D+ L G ++ G++GG E R A + GK
Sbjct: 225 REIDRMIRAEDIHPGELPEEEFDQPLGVGSGAGVIF---GATGGVMEAALRSAYYLVTGK 281
Query: 259 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
E F +R D ++E A+++ G T ++ A+ G N + +V ++ Y FVE+
Sbjct: 282 NPEPD-AFGNVRGMDGWKEAAIDIAGTT-VRVAVASGLGNARRLVEALRKGDVQYDFVEI 339
Query: 318 MACPSGCL 325
MACP GC+
Sbjct: 340 MACPGGCI 347
>gi|302389268|ref|YP_003825089.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Thermosediminibacter oceani DSM 16646]
gi|302199896|gb|ADL07466.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Thermosediminibacter oceani DSM 16646]
Length = 591
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 193/378 (51%), Gaps = 34/378 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVF-KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI+ ++P R SL E FG+ + KK+ L+ +G +FDT S DLT++E +E
Sbjct: 224 KHVIVQIAPAVRVSLGEEFGLGRGAIVTKKIPAALRRMGFDRVFDTDFSADLTIMEEGHE 283
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
FI R + LP+++S PGWI + E + L +S+ KSPQQ GA
Sbjct: 284 FIERLQH---------GGKLPLITSCSPGWIKFCEHYYPEF-LENLSTCKSPQQMFGAVA 333
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + QK+G P +I+ V++MPC KK E R + + Y+D VD VL
Sbjct: 334 KTYYAQKVGIDPSKIFVVSIMPCTAKKYECQRPEM------RSSGYQD-------VDVVL 380
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +++ +N A+ + D L G ++ G++GG E R + +
Sbjct: 381 TTRELSRMLKEAGINLAAMPDEDFDDPLGISTGAGAIF---GATGGVMEAALRTVYEVMT 437
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G+ ++ +EF +R + +E ++++G + A+ +G N + ++ ++K + Y FV
Sbjct: 438 GRELK-DVEFTEVRGVEGIKEATIDIDG-VKVNVAVAHGLGNARKLLDRIKSGEASYHFV 495
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK----NPLVRSLYDE 371
E+M CP GC+ GGGQ G+ + + + + V + P + NP V+ LY E
Sbjct: 496 EIMGCPGGCVGGGGQPILSAGERWELDYREVRGSAIYEVDRSMPLRKSHENPAVQQLYRE 555
Query: 372 WLEQPGSEKAKKHVHTEY 389
+L +P SEK+ + +HT Y
Sbjct: 556 FLGKPLSEKSHELLHTHY 573
>gi|38146740|gb|AAR11770.1| LET1-like protein, partial [Komagataella pastoris]
Length = 438
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 123/394 (31%), Positives = 186/394 (47%), Gaps = 103/394 (26%)
Query: 4 KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKS-LGVKSIFDT 62
K+ L+ ++ N+ K + S+S Q+RASLA F + + K L LK+ + K + T
Sbjct: 88 KELLNALETDGNR-KVFVASISHQTRASLASAFDVQIEAMDKVLIYLLKNVMKFKYVIGT 146
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
R L+ I + R S++ P+++S CPGW+ YAEK +ILP I
Sbjct: 147 ETGRRLSHIFTTLDLQNRSPHSEK----------PLINSTCPGWVLYAEKT-HPFILPRI 195
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
S++KS QQ G +K+ + + LG +IYH++VMPC+DKKLEAAR+
Sbjct: 196 STIKSTQQITGHLLKNIVSKDLGIEKSQIYHLSVMPCFDKKLEAARDS------------ 243
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEA-LEESPLDKMLTNVD------------- 228
++P+VD V+T E++ +I+ ++ + L+ES LD N D
Sbjct: 244 -----DVPDVDCVITARELVQVIEELNIDLQTILKESVLD----NTDIYSVYRSSSPPGW 294
Query: 229 ---DEGHLYGVAGSSGGYA-----ETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALE 280
++ L +SGGYA + RHA + IEG RNSD E L
Sbjct: 295 YQPEQSWLNNKGSASGGYAMQYLLDVQQRHADSEII--TIEG-------RNSDIYEHRLV 345
Query: 281 V-EGKTLLKFALCYGFQNLQNIVRKVKMR------------------------------- 308
+ +G+ + A+ GF+N+QN++RK+K
Sbjct: 346 LRDGQVVASSAVVNGFRNIQNLIRKLKPNHKATGGGISARRRSRKLKEDQTGDQGQSNAV 405
Query: 309 ----KCDYQFVEVMACPSGCLNGGGQIKPKPGQS 338
KCDY VE+MACP GC+NGGGQI Q+
Sbjct: 406 VDPSKCDY--VEIMACPGGCINGGGQIAAPADQN 437
>gi|149246746|ref|XP_001527798.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|259511268|sp|A5DSI2.1|NAR1_LODEL RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|146447752|gb|EDK42140.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 594
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 119/388 (30%), Positives = 174/388 (44%), Gaps = 95/388 (24%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFKKLTT-FLKSLGVKSIFDTSCSRDLTLIEACNE 76
K + S+S Q RASLA + +S ++ K L F+ +G + + TS R L+LI
Sbjct: 126 KVFVASISQQLRASLAMAYDMSIEEMDKLLINLFVNQMGFQYVVGTSLGRKLSLINESQG 185
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
I R ++ + + N P+LSS CPGW+ YAEK Y+LPYIS+VKS QQ G +
Sbjct: 186 MIHRKEEGKTIGENLKN---PVLSSICPGWVLYAEKT-HPYVLPYISTVKSAQQITGCLL 241
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K+ + G ++YH+T+MPC+DKKLE+AR + D + +P+VD VL
Sbjct: 242 KNLTAYERGIGKSKVYHLTIMPCFDKKLESARPELFANHDGAD--------NVPDVDCVL 293
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG-----------------S 239
T E++ LI ++ + + +L D +Y A S
Sbjct: 294 TARELVTLIDESLGKYQLVPKVIPQTLLRK--DIAEVYKSAAPTNWPFVQYSWSNDPGSS 351
Query: 240 SGGYAETVFRHAAKTLFG-----------KVIEGHLEFKTIRNSDFREVALEVEGKTLLK 288
SGGYA T R + L KV++G +N+D E+ L G +
Sbjct: 352 SGGYAYTYLRLFQEQLITTQNYRPEDFSMKVLQG-------KNTDVYEMRLLHNGNQVAS 404
Query: 289 FALCYGFQNLQNIVRKVK-------------------------MRK-------------- 309
A+ GF+N+QN+VRK+K M K
Sbjct: 405 SAIVNGFRNIQNLVRKLKPGNNNNKVGGLAIKVNPLVARRRARMSKSEDSSGASASSMAP 464
Query: 310 ------CDYQFVEVMACPSGCLNGGGQI 331
+VE+MACP GC+NGGGQI
Sbjct: 465 AEIADPSKVDYVEIMACPQGCINGGGQI 492
>gi|169831700|ref|YP_001717682.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C]
gi|169638544|gb|ACA60050.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C]
Length = 615
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 122/401 (30%), Positives = 201/401 (50%), Gaps = 40/401 (9%)
Query: 1 MLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
+ E++ + E I+ + V++ +P + +L E FG+ V K+ + L+ +G +
Sbjct: 229 LTEREYIHEVWKAIDDPDRQVVVQTAPAIQVTLGEEFGMPVGTVVTGKMVSALRRIGFDT 288
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+F T + DLT++E +E + R + LP++SS PGW+ + E +
Sbjct: 289 VFSTEFAADLTIMEEAHELLERLE---------GKGDLPLISSCSPGWVKFCEHYYPEF- 338
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L +S+ KSPQ+ +GA +K + +K G P + V VMPC KK EAAR + V
Sbjct: 339 LDNLSTCKSPQEMLGALVKSYYAEKEGLDPARLVTVAVMPCTAKKFEAARPELV-----S 393
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
E RD VD VLTT EV +I+ ++ E LE+ D+ L G ++
Sbjct: 394 REGRRD-------VDFVLTTREVARMIRQAGIDLETLEDGEFDRPLGIATGAGVIF---A 443
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R A G+ + ++FK +R + R + + G+T LK A+ +G +N
Sbjct: 444 ATGGVMEAAIRTAYALTEGEEM-ARVDFKAVRGLNGVRLAEVHLRGRT-LKLAVAHGTRN 501
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELI-----KTLETIYLE 352
+ ++ ++K +Y F+E+M CP GG +P G +EL K E +Y
Sbjct: 502 ARRLLEQIKA-GAEYHFLEIMGCPG--GCIGGGGQPILGAGRRELAQEYRRKRAEALYSI 558
Query: 353 NVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
++ L +NP VR LY+E+L P S+KAK+ +HT Y P
Sbjct: 559 DLKRELRRAHENPAVRKLYEEYLGHPLSDKAKELLHTTYTP 599
>gi|290983098|ref|XP_002674266.1| iron hydrogenase [Naegleria gruberi]
gi|284087855|gb|EFC41522.1| iron hydrogenase [Naegleria gruberi]
Length = 752
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 194/402 (48%), Gaps = 34/402 (8%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSI 59
+L+K ++ F N K ++ S +P R +++E FG P ++ L+ LG +
Sbjct: 368 LLQKSVMNAF-DNKEKDYIMVASTAPAVRVAISEEFGKEPGHYTASQMVQGLRKLGFDYV 426
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
FDT S DLT++E E I R + PM +S CPGW+ E I+
Sbjct: 427 FDTLFSADLTIMEEGTELIKRLTS-------ETPGPFPMYTSCCPGWVNLVESDFPE-II 478
Query: 120 PYISSVKSPQQTIGATIKHHICQKLG--FRPDEIYHVTVMPCYDKKLEAAREDFVFQLDS 177
P +SS KSPQQ +G+ I+++ K+ + ++ HV++MPC KK EA R +
Sbjct: 479 PNVSSCKSPQQMLGSVIRNYWTPKMQQHIKGKKVIHVSIMPCTAKKGEAQRPEMGVP--- 535
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDD---EGHLY 234
+G +P++D VLTT E+ L ++ V+ LE + + + D EG
Sbjct: 536 -----DKDGNIVPDIDYVLTTRELGKLFKMHQVH--DLETKSVGNEVGDYDSPIAEGTGA 588
Query: 235 GVA-GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALC 292
V G +GG E R A + L K +E L + +R D R + + G +K +
Sbjct: 589 AVIFGVTGGVMEAALRTAYEILEKKPLE-RLNLQEVRGLDGIRSATINIAG-VDVKVGVA 646
Query: 293 YGFQNLQNIVRKVKM--RKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIK-TLETI 349
+G NL+ +V K K + F+E+MACPSGC+ GGG+ K ++ +K L+ I
Sbjct: 647 HGSGNLKRLVNYTKTLDPKDQFHFIEMMACPSGCVGGGGEPKIVEKLEHQDRVKRRLQAI 706
Query: 350 YL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
Y E + N ++ LY+E+ ++P KA +HT Y
Sbjct: 707 YKLDEAAITRKSHDNREIQQLYNEYYKEPCGHKAHHELHTHY 748
>gi|113971582|ref|YP_735375.1| hydrogenases, Fe-only [Shewanella sp. MR-4]
gi|113886266|gb|ABI40318.1| hydrogenases, Fe-only [Shewanella sp. MR-4]
Length = 410
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 169/327 (51%), Gaps = 23/327 (7%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K V+ ++P R ++ E FG+ + V KL + G K IFD + + DLT++E
Sbjct: 83 DKNTTVVGIIAPAVRVAIGEEFGLGTGELVTGKLYGAMNQAGFK-IFDCNFAADLTIMEE 141
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EFI R + + E + +LP +S CPGW+ Y E + + +LP +S+ KSPQQ G
Sbjct: 142 GSEFIHRLHAN--AKGEENAGALPQFTSCCPGWVRYLETRYPA-LLPNLSTAKSPQQMAG 198
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP--- 190
K + + +P+ I+ V+VMPC KKLEA+R +F +S + +++ G P
Sbjct: 199 TVAKTYGAKVYQMQPENIFTVSVMPCTSKKLEASRPEF----NSAWQYHQEHGANTPSYQ 254
Query: 191 EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH 250
++D+VLTT E+ L+++ ++ E D + + G ++ G++GG E R
Sbjct: 255 DIDAVLTTREMAQLLKMLDIDLANTPEYQGDSLFSEYTGAGTIF---GTTGGVMEAALRT 311
Query: 251 AAKTLFGKVIEGHLEFKTIRNSDFREVA------LEVEGKTLLKFALCYGF-QNLQNIVR 303
A K L G + LEF+ +R + A E+ + A+ + N++ ++R
Sbjct: 312 AHKVLTGTEM-AKLEFEPVRGLKGVKSASVSLFDTELNQNVTVNVAVVHDMGNNIEPVLR 370
Query: 304 KVKMRKCDYQFVEVMACPSGCLNGGGQ 330
V Y F+EVM C GC+NGGGQ
Sbjct: 371 DVMAGTSPYHFIEVMNCAGGCVNGGGQ 397
>gi|134299508|ref|YP_001113004.1| hydrogenase [Desulfotomaculum reducens MI-1]
gi|134052208|gb|ABO50179.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Desulfotomaculum reducens MI-1]
Length = 593
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 191/377 (50%), Gaps = 33/377 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ +P R ++AE FG+ P V KL L+ LG S+ DT + DLT++E NE
Sbjct: 227 KHVVVQTAPAVRVAIAEEFGMEPGTVSTGKLVAALRRLGFDSVMDTDFAADLTILEEGNE 286
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
FI R + LPM++S PGWI Y E +L ++S+ KSPQQ GA +
Sbjct: 287 FIKRVTEG---------GVLPMITSCSPGWIKYIEMYYPD-LLAHLSTCKSPQQMFGALV 336
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K +K P I V++MPC KK EA R++ RD G + +VD VL
Sbjct: 337 KSFYAEKKAIDPANIVSVSIMPCTAKKFEAQRDEL-----------RDSGYQ--DVDIVL 383
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +++ ++++ L + D + ++GV +GG E R + L
Sbjct: 384 TTRELARMLREIGIDWDNLSDDDYDAPMGLSTGAAVIFGV---TGGVMEAAVRTVYEVLT 440
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
+ + ++ +R + +E L+V G +K A+ + N + ++ K++ + DY F+
Sbjct: 441 KEAMP-NINLTPVRGMEGIKEATLKV-GDLDVKVAVAHTLGNARKLLDKIRAGEADYHFI 498
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM-LADPFKNPLVRSLYDEWLE 374
E+M CP GC+ GGGQ P P L + T + + L +NP ++++Y+E+L
Sbjct: 499 EIMCCPGGCIGGGGQ--PIPTNLEVRLKRIAGTYRADEALPLRKSHENPAIKAIYEEFLG 556
Query: 375 QPGSEKAKKHVHTEYHP 391
+P EK+ K +HT Y P
Sbjct: 557 EPLGEKSHKLLHTHYVP 573
>gi|414153013|ref|ZP_11409340.1| Iron hydrogenase 1 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
gi|411455395|emb|CCO07242.1| Iron hydrogenase 1 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
Length = 593
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 124/381 (32%), Positives = 195/381 (51%), Gaps = 41/381 (10%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ +P R ++AE FG+ P V KL L+ LG S+ DT + DLT+IE NE
Sbjct: 227 KHVVVQTAPAVRVAIAEEFGMEPGTVSTGKLVAALRRLGFDSVMDTDFTADLTIIEEGNE 286
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
FI R + LPM++S PGWI Y E +L ++S+ KSPQQ GA +
Sbjct: 287 FIKRVTE---------GGVLPMITSCSPGWIKYIEMYYPD-LLAHLSTCKSPQQMFGALV 336
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K +K G P I V++MPC KK EA R++ +D G + +VD VL
Sbjct: 337 KTFYAEKKGIDPASIVSVSIMPCTAKKFEAQRDEL-----------KDSGYQ--DVDVVL 383
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA---GSSGGYAETVFRHAAK 253
TT E+ +++ +++E L + D + G G A G++GG E R +
Sbjct: 384 TTRELGRMLREIGIDWENLPDEDYDAPM------GLSTGAAVIFGATGGVMEAAVRTVYE 437
Query: 254 TLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ + + + +R + +E L+V G +K A+ + N + ++ K++ + DY
Sbjct: 438 VITKEPMP-DINLTPVRGMEGIKEATLKV-GDLDVKVAVAHTLGNARKLLDKIRAGEADY 495
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYD 370
F+E+M CP GC+ GGGQ P P L K + IY E++ + +NP ++++Y+
Sbjct: 496 HFIEIMCCPGGCIGGGGQ--PIPTNLEVRL-KRIGGIYKADEDLPIRKSHENPAIKAIYE 552
Query: 371 EWLEQPGSEKAKKHVHTEYHP 391
E+L QP EK+ K +HT Y P
Sbjct: 553 EFLGQPLGEKSHKLLHTHYVP 573
>gi|378821841|ref|ZP_09844694.1| putative ferredoxin hydrogenase HydA1 [Sutterella parvirubra YIT
11816]
gi|378599337|gb|EHY32372.1| putative ferredoxin hydrogenase HydA1 [Sutterella parvirubra YIT
11816]
Length = 633
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 120/397 (30%), Positives = 193/397 (48%), Gaps = 34/397 (8%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIF 60
EK D L I + ++ +P R L E FG+ P V ++T LK+LGV +
Sbjct: 239 EKDQGDVLLDWIEDPAVTTVVQTAPAVRVQLGEAFGLPPGTNVEGRITAALKALGVDFVM 298
Query: 61 DTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILP 120
DT S D+T++E E +A+ K +E+ + +S CPGW+ Y E + P
Sbjct: 299 DTRWSADVTIMEEGTEVLAKLKADREAGRRGT-----YFTSCCPGWVNYVELS-APELTP 352
Query: 121 YISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEE 180
+SS +SPQ GA K ++ QK G I + +MPC KK EAAR V
Sbjct: 353 NLSSTRSPQAIFGALSKTYLPQKKGLDAKAIRTIAIMPCTAKKEEAARPTLV-------- 404
Query: 181 TYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDK-MLTNVDDEGHLYGVAGS 239
R+ G++ + D VLTT E +++ ++ + E P D ++ G L+G +
Sbjct: 405 --REAGVQ--DTDLVLTTREFAAVLRRAGIDLAQMPEVPYDSPFMSASSGAGALFG---A 457
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNL 298
+GG E R F+ +R D +E +E+ G +++ A+ +G N+
Sbjct: 458 TGGVMEAAVRTMRAVTGVDDKTWRPAFEAVRGMDGIKEAEVELPGVGVIRIAVVHGLANV 517
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT-LETIYLENVMLA 357
+ +V VK + + FVEVMACP GC+ GGG + + ++P+ + + L+ I+ +
Sbjct: 518 KTVVEAVKRGESRWDFVEVMACPGGCVGGGGAGRGQ--RTPRAALPSRLQGIW--KIDAE 573
Query: 358 DPFK----NPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
P + NP VR LY+++L +PGS A +H EY
Sbjct: 574 APIRASHENPDVRRLYEDFLGEPGSHLAHDLLHCEYR 610
>gi|427387949|ref|ZP_18883934.1| hydrogenase, Fe-only [Bacteroides oleiciplenus YIT 12058]
gi|425725348|gb|EKU88221.1| hydrogenase, Fe-only [Bacteroides oleiciplenus YIT 12058]
Length = 588
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 112/394 (28%), Positives = 200/394 (50%), Gaps = 29/394 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKS 58
+ E+ + L ++ N K VI+ +P RA+L E FG+ + V K+ L+ LG
Sbjct: 213 LTERDHTNRLLLDLENPDKVVIVQTAPAVRAALGEEFGLPAGTLVTGKMVYALRELGFDY 272
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E E + R + D + LP+L+S CP W+ + E +
Sbjct: 273 VFDTDFAADLTIMEEGAEILNRLTRYMNGD---KSVRLPILTSCCPAWVNFFEHHFPD-M 328
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ +SPQQ G+ K +K+G +++ V++MPC KK E R +F + D
Sbjct: 329 LDIPSTARSPQQMFGSIAKTFWAEKMGIPREKLVVVSIMPCLAKKYECDRNEF--KTDGS 386
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
P+VD ++T E+ LI+ + F L + D+ + G ++G
Sbjct: 387 -----------PDVDYSISTRELARLIRRANIGFTLLTDKEFDQPMGASTGAGVIFG--- 432
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R + G+ +E ++ F+ +R + R ++++G L K + +G N
Sbjct: 433 TTGGVMEAALRSVYEIYTGRTLE-NVNFEQVRGLAGVRRATIDLDGFEL-KVGIAHGLGN 490
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM-- 355
++++ ++ + +Y +E+MACP GC+ GGGQ P + + L +Y E+
Sbjct: 491 ARHLLEDIRHGRNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEVLYARANALYREDAQKP 548
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP +++LY+E+L +P SE A++ +HT Y
Sbjct: 549 LRKSHENPYIKTLYEEYLGRPLSETAERLLHTHY 582
>gi|393784069|ref|ZP_10372236.1| hydrogenase, Fe-only [Bacteroides salyersiae CL02T12C01]
gi|392666876|gb|EIY60388.1| hydrogenase, Fe-only [Bacteroides salyersiae CL02T12C01]
Length = 588
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 114/394 (28%), Positives = 194/394 (49%), Gaps = 29/394 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKS 58
+ E+ + L ++ N K VI+ +P R +L E FG+ + QV K+ L+ LG
Sbjct: 213 LTERDHTNRLLEDLDNPDKVVIVQTAPAVRVALGEEFGMPAGTQVTGKMVYALRELGFNY 272
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E E + R + D N LP+L+S CP W+ + E +
Sbjct: 273 VFDTDFAADLTIMEEGTEVLERLGRFLNGD---KNVCLPILTSCCPAWVNFFEHHFPD-L 328
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ +SPQQ G+ K + +K+G +++ V++MPC KK E RE+F +
Sbjct: 329 LDIPSTARSPQQMFGSIAKTYWAEKMGIPREKLVVVSIMPCLAKKYECDREEFKVNGN-- 386
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
P+VD ++T E+ LI+ + F L +S D + G ++G
Sbjct: 387 -----------PDVDYSISTRELATLIKRANIGFHLLPDSEFDHPMGESTGAGVIFG--- 432
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
++GG E R + G V++ ++ F+ +R + R + + G L K + +G N
Sbjct: 433 TTGGVMEAALRSVYEIYTGNVLK-NVNFENVRGLEGVRRATINLNGFEL-KVGIAHGLGN 490
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM-- 355
+ ++ ++ +Y +E+MACP GC+ GGGQ P L + +Y E+
Sbjct: 491 ARRLLEDIRNGHNEYHAIEIMACPGGCIGGGGQ--PLHHGRADILYARAKALYQEDAQKP 548
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ +NP ++ LY+E+L +P SEKA +HT Y
Sbjct: 549 IRKSHENPYIQKLYEEYLGKPLSEKAHMLLHTHY 582
>gi|169831496|ref|YP_001717478.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C]
gi|169638340|gb|ACA59846.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C]
Length = 590
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 113/389 (29%), Positives = 187/389 (48%), Gaps = 50/389 (12%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+ K V++ +P +R +L E FG+ P V K+ L+ LG +FDT + DLT++E
Sbjct: 222 DPAKHVVVQTAPATRVTLGEAFGLPPGTPVTGKMVAALRRLGFDRVFDTDFTADLTIVEE 281
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
NE I R + LPM++S PGWI + E + LP++S+ KSPQQ G
Sbjct: 282 GNELIHRLTK---------GGPLPMITSCSPGWIKFIEHFYPEF-LPHLSTAKSPQQMFG 331
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + ++ G P ++ V++MPC KK EA R + YRD VD
Sbjct: 332 ALAKTYYAEQAGIDPKDMVVVSIMPCTAKKFEAGRPEM------NASGYRD-------VD 378
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
VLTT E++ ++ ++ + + D+ + G ++ G++GG E R A +
Sbjct: 379 MVLTTRELVRMLHEACIDLNNMPDEEYDRPMGLSTGAGAIF---GATGGVMEAALRTAYE 435
Query: 254 TLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-D 311
L GK + G ++ + +R D R+ A+++EG ++ + +G + + ++ K+K + D
Sbjct: 436 LLTGKPLPG-IDIEVVRGLDGVRQAAIDLEGNP-VRVMVAHGLGHARMLMEKLKAGELKD 493
Query: 312 YQFVEVMA---------CPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKN 362
F+EVMA C N P Q I L+ + + L +N
Sbjct: 494 CHFIEVMACPGGCIGGGGQPICAN------PDVRQRRAAGIYRLD----KGMKLRKSHEN 543
Query: 363 PLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
P + LY+ +L +P EK+ K +HT Y P
Sbjct: 544 PAIIELYERFLGEPLGEKSHKLLHTSYTP 572
>gi|293401255|ref|ZP_06645399.1| putative [Fe] hydrogenase, large subunit HymC [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291305381|gb|EFE46626.1| putative [Fe] hydrogenase, large subunit HymC [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 553
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 121/398 (30%), Positives = 206/398 (51%), Gaps = 30/398 (7%)
Query: 1 MLEKQSLDEFLSNINKGKAVIISL-SPQSRASLAEHFG-ISPLQVFKKLTTFLKSLGVKS 58
++E+ + I GK I+++ SP R +L E FG ++ V K++ L++LGV
Sbjct: 88 LVERHDWMDVSDMIKSGKKKIVAITSPSVRVALGEEFGMVAGSYVEKQMVAALRALGVDY 147
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ + DLT++E +E I R + + LP +S CP W+ + E ++
Sbjct: 148 VFDTTFAADLTIMEEASELIDRIQHKK---------PLPQFTSCCPAWVKFVETYY-PHL 197
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLD-S 177
LP IS+ KSP TIK QK G ++Y V + PC KK E RE+F D
Sbjct: 198 LPNISTSKSPISMFAPTIKTWFAQKEGIAAQDLYVVAITPCTAKKFEITREEFHDAADYH 257
Query: 178 QEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA 237
QE+ Y+D D V+TT E+ + ++ + + + ES D ++ G ++G
Sbjct: 258 QEKPYQD-------CDKVVTTKELANWLRAENKDLTTVGESDYDTLMPRGSGAGVIFG-- 308
Query: 238 GSSGGYAETVFRHAAKTLFGKVI-EGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGF 295
++GG E R A + + E L+ + +R D RE ++ ++ +L + A+ +G
Sbjct: 309 -NTGGVMEAAIRSAYYFITKQQPDENLLKLEAVRGLDGVREASVTIDNLSL-RVAIVHGT 366
Query: 296 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKT-LETIYLEN- 353
N + + ++ K Y FVEVM CP GC+ GGGQ K G+ +E+ K + ++Y ++
Sbjct: 367 DNARKFLAHMEETKQHYDFVEVMTCPGGCIGGGGQPK-HIGEDMQEIRKKRIASLYDKDA 425
Query: 354 -VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
+ L + NP ++++Y+E+ P SE+A+K +HT Y
Sbjct: 426 AMTLRNSHDNPHIKAVYEEFYGTPLSERAEKLLHTSYQ 463
>gi|333980350|ref|YP_004518295.1| hydrogenase, Fe-only [Desulfotomaculum kuznetsovii DSM 6115]
gi|333823831|gb|AEG16494.1| hydrogenase, Fe-only [Desulfotomaculum kuznetsovii DSM 6115]
Length = 676
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 115/364 (31%), Positives = 177/364 (48%), Gaps = 35/364 (9%)
Query: 32 LAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDE 90
+ E FG+ P + ++ L+ +G +FDT + D+T IE E + R ++
Sbjct: 239 IGEEFGLLPGEKATGQMVAALRKIGFDRVFDTLFTADMTTIEEGMELLGRLEKG------ 292
Query: 91 RSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDE 150
LP+ +S CP W+ YAE Q + +L +S+ +SPQQ G+ +K H +++G P++
Sbjct: 293 ---GRLPLFTSCCPAWVKYAE-QFHADLLENLSTCRSPQQMFGSLVKKHYAREIGRSPEQ 348
Query: 151 IYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAV 210
+ V+VMPC KK EA R +F +P+VD VLTT E+ +I+ +
Sbjct: 349 VVCVSVMPCTAKKFEARRPEFTTG-------------GVPDVDFVLTTMELAQMIKEAGI 395
Query: 211 NFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH-AAKTLFGKVIEGHLEFKTI 269
F LE D L +Y G+SGG E+V R AA+ G V G ++F +
Sbjct: 396 VFNELEPEVFDNPLGMGSGAAVIY---GASGGVMESVVRFVAAQQSPGDV--GRVDFYPV 450
Query: 270 RN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGG 328
R +E LE+ G+ LK A+ G N + ++ ++K + Y VEVMACP GCL GG
Sbjct: 451 RGIQGIKEAELEIGGQN-LKLAVVNGLANAEKLINRIKSGEAFYHAVEVMACPGGCLGGG 509
Query: 329 GQIKPKPGQSPKELIKTLETIYLENV-MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHT 387
GQ P P + L + L+ L P N V + W P + + +HT
Sbjct: 510 GQ--PYPNNTASRLGRMKGLYALDRAEQLHRPQDNIFVTRALERWFGGPANANTHQALHT 567
Query: 388 EYHP 391
Y+P
Sbjct: 568 RYYP 571
>gi|251780559|ref|ZP_04823479.1| iron hydrogenase 1 [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|243084874|gb|EES50764.1| iron hydrogenase 1 [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 582
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 193/381 (50%), Gaps = 36/381 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
NK K ++ ++P RAS E G++ + K+L + L+ +G IFDT+ + DLT++E
Sbjct: 218 NKDKITVLQIAPAVRASWGESLGLTKEKATVKRLVSALRKIGFDYIFDTNFAADLTIMEE 277
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EF+ R K +N++LPM +S CP W+ + + Q + +S+ KSPQQ G
Sbjct: 278 GSEFLERLK---------NNTNLPMFTSCCPAWVRFLKSQYPD-MTKMLSTAKSPQQMFG 327
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + + L P +IY +++MPC KK EA + D G ++D
Sbjct: 328 AIAKSYYAKLLNVDPSKIYCISIMPCIAKKHEA-----------EIPIMNDAGYG-QDID 375
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
LTT EV +I+ + + L ES D L G ++G S+GG E R A
Sbjct: 376 LCLTTREVERMIRSEHIIANDLNESDFDTPLGIGSGAGVIFG---STGGVMEAALRTAYF 432
Query: 254 TLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
G + + FK IR + +E + E+ T LK A+ G N +N+++ ++ Y
Sbjct: 433 LTCGNNPDPN-AFKEIRGMNGIKEASFEINN-TKLKVAVVSGLNNARNLIKNLRKGNAYY 490
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD---PFKNPLVRSLY 369
F+EVMACP GC GGGQ P + EL +T E L+D +NP + ++Y
Sbjct: 491 DFIEVMACPGGCSGGGGQ----PIKDGIELAETRSKKLYELDELSDIRFSHENPSILNVY 546
Query: 370 DEWLEQPGSEKAKKHVHTEYH 390
E+LE+P S + K +HT+++
Sbjct: 547 KEFLEKPLSNVSHKLLHTDHN 567
>gi|410465488|ref|ZP_11318735.1| hydrogenase, Fe-only, partial [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409981469|gb|EKO38033.1| hydrogenase, Fe-only, partial [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 517
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/311 (32%), Positives = 159/311 (51%), Gaps = 23/311 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI+ +P RA+L E GI+P V K+ L+ LG IFDT + DLT++E +E
Sbjct: 229 KVVIVQTAPAVRAALGEDLGIAPGTSVTGKMAAALRRLGFDHIFDTDFAADLTIMEEGSE 288
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ R + D + LP+L+S CPGW+ + E +L S+ KSPQQ GA
Sbjct: 289 FLDRLTRYLNGD---QTAKLPILTSCCPGWVKFFEHNFQD-MLDVPSTAKSPQQMFGAIA 344
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + LG +++ V+VMPC KK E AR + F +D P+VD V+
Sbjct: 345 KTYYADMLGIPREKLVVVSVMPCLAKKYERARPE--FSVDGN-----------PDVDIVI 391
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
+T E+ LI+ ++F +L + D L ++GV +GG E R A +
Sbjct: 392 STRELARLIKRMNIDFASLPDEDFDAPLGESTGAAPIFGV---TGGVIEAALRTAYELAT 448
Query: 257 GKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVE 316
G+ ++ ++F+ +R D +VA G L+ + +G N + ++ +V+ + + +E
Sbjct: 449 GETLQ-KVDFEDVRGMDGVKVATVKVGPHELRIGIAHGLGNARKLLNRVREGE-TFHAIE 506
Query: 317 VMACPSGCLNG 327
VMACP GC+ G
Sbjct: 507 VMACPGGCIGG 517
>gi|188588530|ref|YP_001921030.1| iron hydrogenase 1 [Clostridium botulinum E3 str. Alaska E43]
gi|188498811|gb|ACD51947.1| iron hydrogenase 1 [Clostridium botulinum E3 str. Alaska E43]
Length = 582
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 194/381 (50%), Gaps = 36/381 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
NK K ++ ++P RAS E G++ + K+L + L+ +G IFDT+ + DLT++E
Sbjct: 218 NKDKITVLQIAPAVRASWGESLGLTKEKATVKRLVSALRKIGFDYIFDTNFAADLTIMEE 277
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EF+ R + +N++LPM +S CP W+ + + Q + +S+ KSPQQ G
Sbjct: 278 GSEFLERLQ---------NNTNLPMFTSCCPAWVRFLKSQYPD-MTKMLSTAKSPQQMFG 327
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A K + + L P +IY +++MPC KK EA + D G ++D
Sbjct: 328 AIAKSYYAKLLNVDPSKIYCISIMPCIAKKHEA-----------EIPIMNDAGYG-QDID 375
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
LTT EV +I+ + + L ES D L G ++G S+GG E R A
Sbjct: 376 LCLTTREVERMIRSEHIIANDLNESDFDTPLGIGSGAGVIFG---STGGVMEAALRTAYF 432
Query: 254 TLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
G + + FK IR + +E + E+ T LK A+ G N +N+++ ++ Y
Sbjct: 433 LTCGNNPDPN-AFKEIRGMNGIKEASFEINN-TKLKVAVVSGLNNARNLIKNLRKGNVYY 490
Query: 313 QFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLAD---PFKNPLVRSLY 369
F+EVMACP GC GGGQ P + EL +T + E L+D +NP + ++Y
Sbjct: 491 DFIEVMACPGGCSGGGGQ----PIKDGIELAETRSKMLYELDELSDIRFSHENPSILNVY 546
Query: 370 DEWLEQPGSEKAKKHVHTEYH 390
E+LE+P S + K +HT+++
Sbjct: 547 KEFLEKPLSNVSHKLLHTDHN 567
>gi|188589939|ref|YP_001920992.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E3 str.
Alaska E43]
gi|188500220|gb|ACD53356.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E3 str.
Alaska E43]
Length = 646
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 194/381 (50%), Gaps = 27/381 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI ++P R ++ E FG P + V KK+ L+ LGV +FDT+ DLT++E E
Sbjct: 287 KVVITQMAPAIRVAIGEAFGFEPGENVEKKIAAGLRKLGVDYVFDTTWGADLTIMEEAAE 346
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
R ++ D+ N LP+L+S CP WI + E +L SS KSP Q
Sbjct: 347 LQERLEKYLAGDE---NVKLPILTSCCPSWIKFIENNYAD-MLEVPSSAKSPMQMFATIA 402
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K ++ G +E+ V +MPC K EA+R +F ++ +VD V+
Sbjct: 403 KEIWAKEKGLSREEVTSVAIMPCVAKIYEASRVEFSVDMNY-------------DVDYVI 449
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E++ + + ++ + +E+ +D ++ G ++G +GG E R A + +
Sbjct: 450 TTKELIKIFEKSGIDLKEIEDEEIDAVMGEYTGAGIIFG---RTGGVIEAATRTAIENMT 506
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
GK I+ ++EF+ +R D FR LEV G+ L+ + +G + ++ K++ + + +
Sbjct: 507 GKRID-NIEFEGLRGWDGFRICELEV-GELKLRIGVAHGLKEAAKMLDKIRSGEEFFHAI 564
Query: 316 EVMACPSGCLNGGGQ--IKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWL 373
E+MAC GC+ GGGQ I+ Q ++ L I + L +NP V +LY ++L
Sbjct: 565 EIMACVGGCIGGGGQPKIRKNKQQVLEKRADGLNDIDRAKI-LRRSNENPEVLALYKKYL 623
Query: 374 EQPGSEKAKKHVHTEYHPVVK 394
+ P S KA + +HT+Y P VK
Sbjct: 624 DHPLSHKAHELLHTKYFPKVK 644
>gi|167745461|ref|ZP_02417588.1| hypothetical protein ANACAC_00152 [Anaerostipes caccae DSM 14662]
gi|167655182|gb|EDR99311.1| hydrogenase, Fe-only [Anaerostipes caccae DSM 14662]
Length = 572
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/386 (29%), Positives = 200/386 (51%), Gaps = 42/386 (10%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
++ K V+ ++P RA+ AE G+S + +K+ T + +G+ +FDT+ S DLT++E
Sbjct: 218 DENKIVVAQIAPAVRAAWAEQLGLSREEAPVEKIVTAFRRMGIDYVFDTTFSADLTIMEE 277
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EF+ R Q+ D E PM +S CPGW+ + + Q I +S+ KSPQQ G
Sbjct: 278 GSEFVKRL---QDGDLE----EYPMFTSCCPGWVRFIKTQFPDMI-GRLSTAKSPQQMFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A +K + +KLG P+ I+ +++MPC KK E ++D E Y ++D
Sbjct: 330 AVMKTYFAKKLGVDPERIFTLSIMPCLAKKAER-------EMDLFYEEYAGH-----DID 377
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
VLTT E+ +++ + +N + LE+ D G ++G ++GG E R A
Sbjct: 378 CVLTTRELDRMLRAEHLNPQFLEKGEFDSPFETGTGAGVIFG---ATGGVMEAALRSAYF 434
Query: 254 TLFGKV--IEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
+ G+ + E + ++ + E +V G +++ A+ G N +N++ ++ ++
Sbjct: 435 LVTGENPDADAFREIRGVKRQGWTEAEFDVAG-NVIRVAVVSGLGNTRNLMEAIRRKEVK 493
Query: 312 YQFVEVMACPSGC-------LNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPL 364
Y+FVEVMACP GC ++ G ++ + G S L + E + + NP
Sbjct: 494 YEFVEVMACPGGCAGGGGQPIHDGQELAEERGSSLYFLDRDTEIRFSHD--------NPD 545
Query: 365 VRSLYDEWLEQPGSEKAKKHVHTEYH 390
+++LY+E+ E+P S +A + +HTE+
Sbjct: 546 IQNLYEEFFEKPLSHRAHQLLHTEHQ 571
>gi|343429622|emb|CBQ73195.1| related to NAR1-similarity to human nuclear prelamin A recognition
factor [Sporisorium reilianum SRZ2]
Length = 727
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 120/337 (35%), Positives = 159/337 (47%), Gaps = 75/337 (22%)
Query: 21 IISLSPQSRASLAEHFGIS--------PLQVF-KKLTTFLKS-LGVKSIFDTSCSRDLTL 70
+ S+S QS ASL+ + PL+V ++ FL++ G ++DT+ +R + L
Sbjct: 128 VASISTQSLASLSAKYSFQQQSASAALPLRVLLHRIAHFLQTTFGFDYVYDTTFARHIAL 187
Query: 71 IEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 130
E EF R R ++SLPML+SACPGWICYAEK G +LPYIS+ KSPQQ
Sbjct: 188 KEHQREFFQR----------REDASLPMLASACPGWICYAEKTHGE-LLPYISTTKSPQQ 236
Query: 131 TIGATIKHHICQKLGF-RPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEI 189
G K + Q+LG YHVTVMPCYDKKLEA+R DF D+
Sbjct: 237 VAGVIAKRFLPQRLGLIASATTYHVTVMPCYDKKLEASRPDFY-----------DDITST 285
Query: 190 PEVDSVLTTGEVLDLIQLKAVNF----------EALEESPLDKMLTNVDDEGHLYGV--- 236
EVD VLTTGE LD + L NF EAL+ D L L +
Sbjct: 286 KEVDCVLTTGE-LDKLMLDE-NFDICAPVPGEHEALQHDIADSSLQQALPASMLPHIPQL 343
Query: 237 ----AGSSGGYAETVFRHA------------AKTLFGKVIEGHLEFKTIRNSDFREVALE 280
SSGGY + R ++ + + L+ + IR DF E L
Sbjct: 344 LDQPGSSSGGYLFALMRAVWLDWLAQHWHRFPASVREQGLLPKLDVRVIRTVDFTEYVLR 403
Query: 281 VEGK-----------TLLKFALCYGFQNLQNIVRKVK 306
+ L + A CYGF+NLQN+VRK++
Sbjct: 404 APAQLEQDAASSHSSILFRGAQCYGFRNLQNLVRKLQ 440
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/22 (81%), Positives = 21/22 (95%)
Query: 312 YQFVEVMACPSGCLNGGGQIKP 333
Y +VEVMACPSGC+NGGGQI+P
Sbjct: 509 YDYVEVMACPSGCVNGGGQIRP 530
>gi|189467141|ref|ZP_03015926.1| hypothetical protein BACINT_03525 [Bacteroides intestinalis DSM
17393]
gi|224535655|ref|ZP_03676194.1| hypothetical protein BACCELL_00519 [Bacteroides cellulosilyticus
DSM 14838]
gi|189435405|gb|EDV04390.1| hydrogenase, Fe-only [Bacteroides intestinalis DSM 17393]
gi|224522728|gb|EEF91833.1| hypothetical protein BACCELL_00519 [Bacteroides cellulosilyticus
DSM 14838]
Length = 588
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 198/394 (50%), Gaps = 29/394 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKS 58
+ E+ + L ++ N K VI+ +P RA+L E FG+ + V K+ L+ LG
Sbjct: 213 LTERDHTNRLLLDLENPDKVVIVQTAPAVRAALGEEFGLPAGTLVTGKMVYALRELGFDY 272
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E E + R + D + LP+L+S CP W+ + E +
Sbjct: 273 VFDTDFAADLTIMEEGAEILNRLTRYMNGD---KSVRLPILTSCCPAWVNFFEHHFPD-M 328
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ +SPQQ G+ K +K+G +++ V++MPC KK E R +F + D
Sbjct: 329 LDIPSTARSPQQMFGSIAKTFWAEKMGIPREKLVVVSIMPCLAKKYECDRNEF--KTDGS 386
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
P+VD ++T E+ LI+ V F L + D + G ++G
Sbjct: 387 -----------PDVDYSISTRELARLIRRANVGFTLLTDKEFDHPMGASTGAGVIFG--- 432
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R + G+ +E ++ F+ +R + R ++++G L K + +G N
Sbjct: 433 TTGGVMEAALRSVYEIYTGRTLE-NVNFEQVRGLAGVRRATIDLDGFEL-KVGIAHGLGN 490
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM-- 355
+ ++ ++ + +Y +E+MACP GC+ GGGQ P + + L +Y E+
Sbjct: 491 ARQLLEDIRHGRNEYHVIEIMACPGGCIGGGGQ--PLHHGNSEVLYARANALYREDAQKP 548
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP +++LY+E+L +P SE A++ +HT Y
Sbjct: 549 LRKSHENPYIKTLYEEYLGKPLSETAERLLHTHY 582
>gi|331086277|ref|ZP_08335357.1| hypothetical protein HMPREF0987_01660 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406043|gb|EGG85566.1| hypothetical protein HMPREF0987_01660 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 584
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 196/383 (51%), Gaps = 35/383 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
NK K ++ ++P RA+ E G+ + K+ L+ +G +FDT+ S DLT++E
Sbjct: 221 NKKKITVVQIAPAVRAAWGEALGMKREEATVGKIVDALRKIGFDYVFDTAFSADLTIMEE 280
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
EF+ R + + D PM +S CPGWI + + Q +++P +SS KSPQQ G
Sbjct: 281 GAEFLERLQNGELKDR-------PMFTSCCPGWIRFIKSQY-PHLVPQLSSAKSPQQMFG 332
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A +K + + +G P+ I V++MPC KK E E F E Y +VD
Sbjct: 333 AVMKTYFAKSIGVDPENICTVSIMPCLAKKGERNMELFY-------EEYAGH-----DVD 380
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
VLTT E++ +I+ + L ++P D ++ + G ++ G++GG E R A
Sbjct: 381 IVLTTRELVRMIRSAHIAPSTLVDAPCDTLMQDGSGAGVIF---GATGGVMEAALRSAYF 437
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVE---GKTLLKFALCYGFQNLQNIVRKVKMRKC 310
+ GK + F +R+++ A+ E G T+++ A+ G N + ++ ++
Sbjct: 438 LVTGKNPDAD-AFSVVRSNNLNHGAVCAEIPIGDTVVRAAVVSGLGNARQLIEMIERGDV 496
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYL--ENVMLADPFKNPLVRS 367
Y FVEVMACP GC+ GGGQ P +EL ++ + +Y +N + +N V
Sbjct: 497 HYDFVEVMACPGGCVGGGGQ----PIHDGQELALERGKNLYFLDKNANIRFSHENKDVLK 552
Query: 368 LYDEWLEQPGSEKAKKHVHTEYH 390
LY++++ +P S KA +HT+++
Sbjct: 553 LYEDFMGKPLSHKAHLLLHTDHN 575
>gi|423306449|ref|ZP_17284448.1| hydrogenase, Fe-only [Bacteroides uniformis CL03T00C23]
gi|423308962|ref|ZP_17286952.1| hydrogenase, Fe-only [Bacteroides uniformis CL03T12C37]
gi|392678629|gb|EIY72034.1| hydrogenase, Fe-only [Bacteroides uniformis CL03T00C23]
gi|392686179|gb|EIY79486.1| hydrogenase, Fe-only [Bacteroides uniformis CL03T12C37]
Length = 588
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 114/394 (28%), Positives = 198/394 (50%), Gaps = 29/394 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ E+ + L ++ N K VI+ +P RA+L E FG+ P V K+ L+ LG
Sbjct: 213 LTERDHTNRLLEDLANPDKVVIVQTAPAVRAALGEEFGLPPGTLVTGKMVYALRELGFDY 272
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E E + R + + D + LP+L+S CP W+ + E +
Sbjct: 273 VFDTDFAADLTIMEEGAEILNRLTRYLQGD---KSVRLPILTSCCPAWVNFFEHHFPD-M 328
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ +SPQQ G+ K +K+G +++ V++MPC KK E RE+F + D
Sbjct: 329 LDIPSTARSPQQMFGSIAKTFWAKKMGIPREKLVVVSIMPCLAKKYECDREEF--KTDGN 386
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
P+VD ++T E+ LI+ + F L + D + G ++G
Sbjct: 387 -----------PDVDYSISTRELARLIRRANIGFTLLTDKEFDLPMGASTGAGVIFG--- 432
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R + G+ ++ ++ F+ +R + R ++++G L K + +G N
Sbjct: 433 TTGGVMEAALRSVYEIYTGRTLD-NVNFEQVRGLAGVRRATIDLDGFEL-KVGIAHGLGN 490
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVM 355
++++ ++ +Y +E+MACP GC+ GGGQ P + L +Y E N
Sbjct: 491 ARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSDVLYARANALYREDANKP 548
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP +++LY+E+L +P SE A+ +HT Y
Sbjct: 549 LRKSHENPYIKTLYEEYLGKPLSETAEHLLHTHY 582
>gi|406883033|gb|EKD30691.1| hypothetical protein ACD_77C00487G0001 [uncultured bacterium]
Length = 590
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 120/399 (30%), Positives = 205/399 (51%), Gaps = 32/399 (8%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKS 58
++E+ + L++I N+ K VI+ +P R + E G+ V K+ L+ LG
Sbjct: 208 IIERDESKDILTDIYNEDKIVIVQTAPAIRVGIGEAMGMEEGSLVTGKMVAALRKLGFSK 267
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E E I R K + +LPM++S PGWI + E
Sbjct: 268 VFDTDFAADLTIMEEGFELINRIK---------NKGTLPMVTSCSPGWIKFIE-HFFPKS 317
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L ++S+ KSPQQ GA K + QKL P ++ V++MPC KK E R ++ S
Sbjct: 318 LNHLSTCKSPQQMFGAVAKTYYAQKLNIDPRKLVVVSIMPCTAKKFECKRP----EMKSA 373
Query: 179 EETYRD-----EGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHL 233
++D E +VD VLTT E+ + +L ++F L E D L G +
Sbjct: 374 FHYWKDKLNLHEKESFFDVDYVLTTRELAKMFKLTGIDFSNLAEEEFDTPLGISTGAGVI 433
Query: 234 YGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALC 292
+G ++GG E R A + + GK + ++ +R + +E L+++G T +K A+
Sbjct: 434 FG---ATGGVMEAAVRTAYEVITGKPL-AKIDLNVLRGFEGIKEAELDLDG-TKIKVAVA 488
Query: 293 YGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE 352
+ +N + ++ +++ K Y F+EVM CP GCL GGGQ P + K +++Y E
Sbjct: 489 HTLKNARVLLEQIEEGKSPYTFIEVMTCPGGCLGGGGQPIPTTWAIRQ---KRADSLYKE 545
Query: 353 NVM--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ + + +NP ++++Y+E+L++P + + +HTEY
Sbjct: 546 DRLKPIRKSHENPAIKAIYEEFLKEPLGHVSHELLHTEY 584
>gi|251779851|ref|ZP_04822771.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|243084166|gb|EES50056.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 646
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 198/383 (51%), Gaps = 31/383 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI ++P R ++ E FG P + V KK+ L+ LGV +FDT+ DLT++E E
Sbjct: 287 KVVITQMAPAIRVAIGEAFGFEPGENVEKKIAAGLRKLGVDYVFDTTWGADLTIMEEAAE 346
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
R ++ D+ N LP+L+S CP WI + E +L SS KSP Q
Sbjct: 347 LQERLEKYLAGDE---NVKLPILTSCCPSWIKFIENNYAD-MLEVPSSAKSPMQMFATIA 402
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K ++ G +E+ V +MPC K EA+R +F ++ +VD V+
Sbjct: 403 KEIWAKEKGLSREEVTSVAIMPCVAKIYEASRVEFSVDMNY-------------DVDYVI 449
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E++ + + ++ + +E+ +D ++ G ++G +GG E R A + +
Sbjct: 450 TTKELIKIFEKSGIDLKEIEDEEIDAVMGEYTGAGIIFG---RTGGVIEAATRTAIENMT 506
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
GK I+ ++EF+ +R D FR LEV G+ L+ + +G + ++ K++ + + +
Sbjct: 507 GKRID-NIEFEGLRGWDGFRICELEV-GELKLRIGVAHGLKEAAKMLDKIRSGEEFFHAI 564
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK----NPLVRSLYDE 371
E+MAC GC+ GGGQ PK ++ +++++ L ++ A + NP V +LY +
Sbjct: 565 EIMACVGGCIGGGGQ--PKIRKNKQQVLEK-RAEGLNDIDRAKTLRRSNENPEVLALYKK 621
Query: 372 WLEQPGSEKAKKHVHTEYHPVVK 394
+L+ P S KA + +HT+Y P VK
Sbjct: 622 YLDHPLSHKAHELLHTKYFPKVK 644
>gi|337285868|ref|YP_004625341.1| hydrogenase, Fe-only [Thermodesulfatator indicus DSM 15286]
gi|335358696|gb|AEH44377.1| hydrogenase, Fe-only [Thermodesulfatator indicus DSM 15286]
Length = 625
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 121/389 (31%), Positives = 193/389 (49%), Gaps = 24/389 (6%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ +P R S+ E FG+ + KL L+ +G I+DT+ + DLT++E E
Sbjct: 239 KFVVVEFAPALRVSIGEEFGLPYGTIAVGKLYAALRKIGFDRIWDTNFAADLTIMEEGTE 298
Query: 77 FIARYKQ---------SQESDD---ERSNSSLPMLSSACPGWICYAEKQLGSYILPYISS 124
+ R + S E D+ E+ N +LP +S PGWI Y E ++PY+SS
Sbjct: 299 LVLRLVKAGVIDLKDLSLEVDEHALEQVNKALPQFTSCSPGWIKYLE-TFYPELIPYVSS 357
Query: 125 VKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYR- 183
KSPQQ GA K +KLG P ++ V++MPC KK E+ RE+ + +E +
Sbjct: 358 AKSPQQMFGAIAKTFAAEKLGIDPRKMVVVSIMPCTAKKFESKREEMCDAFNYWKEKGKV 417
Query: 184 DEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGY 243
E + +VD V+TT E L ++ +N L + D ++ ++ G +GG
Sbjct: 418 SENEKFYDVDYVITTREAAKLFKMFGINLAELPDEGPDPLIGQYTGAATIF---GRTGGV 474
Query: 244 AETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-LEVEGKTLLKFALCYGFQNLQNIV 302
E R A + + GK + LEF+ + + +VA + + GK +K A+ +G N + I
Sbjct: 475 MEAALRTAYEIITGKTLP-KLEFEDLATLEGIKVASINLNGKE-IKVAVAHGLSNARKIC 532
Query: 303 RKVKMRK--CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF 360
VK Y F+E MACP GC+ GGGQ +P ++ + + L + + +
Sbjct: 533 EDVKNGGEFASYTFIEFMACPGGCIGGGGQPEPTNIETLQARLAALNK-HDHELPIRKSH 591
Query: 361 KNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+NP ++ LY E+L P S A +HT Y
Sbjct: 592 ENPEIKQLYAEFLGHPMSHLAHNLLHTHY 620
>gi|332800412|ref|YP_004461911.1| hydrogenase, Fe-only [Tepidanaerobacter acetatoxydans Re1]
gi|438003802|ref|YP_007273545.1| Periplasmic [Fe] hydrogenase large subunit [Tepidanaerobacter
acetatoxydans Re1]
gi|332698147|gb|AEE92604.1| hydrogenase, Fe-only [Tepidanaerobacter acetatoxydans Re1]
gi|432180596|emb|CCP27569.1| Periplasmic [Fe] hydrogenase large subunit [Tepidanaerobacter
acetatoxydans Re1]
Length = 659
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 182/375 (48%), Gaps = 41/375 (10%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V+ ++P R SL E FG+ P K+ LK +G +FDT + D+T IE E
Sbjct: 222 KTVVAQIAPAVRVSLGEEFGLKPGTPATGKVVGALKKIGFDKVFDTCFAADVTAIEESCE 281
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ R ++Q LP +S CP W+ Y E Y IS+ +SPQQ G+ +
Sbjct: 282 FLERISKNQR---------LPQFTSCCPAWVKYVELHYPQY-KDNISTCRSPQQMFGSLM 331
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +G + I+ V++MPC KK EA RE+F +++ IP+VD+VL
Sbjct: 332 KGIYAKAMGTDSENIFVVSIMPCTAKKSEAKREEF----------FKN---GIPDVDAVL 378
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ V F+ +EE P D L G ++ G S G A V R
Sbjct: 379 TTQELARMIREAGVVFDEVEEMPFDMPLGFATGGGVIF---GGSKGVATAVMR------- 428
Query: 257 GKVIEGHLEFKTIR-NSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
VI +FK + N + + ++ + +K A G N + ++ ++ Y +
Sbjct: 429 --VIGKEPDFKADKDNPNIKTAEIDYNARK-IKVATVSGLGNAKKLLEDLRAGNKYYDLI 485
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM-LADPFKNPLVRSLYDEWLE 374
EVMAC GC+ GGGQ +P K + L E +M L P +NP+++ LY + L
Sbjct: 486 EVMACSGGCIGGGGQPQPNSNNIRKSRKQGL--FGHEKLMQLKSPIENPVIKDLYKDNLG 543
Query: 375 QPGSEKAKKHVHTEY 389
+PGS KA +HT Y
Sbjct: 544 EPGSAKAHAMLHTAY 558
>gi|29345534|ref|NP_809037.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
thetaiotaomicron VPI-5482]
gi|383123880|ref|ZP_09944550.1| hydrogenase, Fe-only [Bacteroides sp. 1_1_6]
gi|29337426|gb|AAO75231.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
thetaiotaomicron VPI-5482]
gi|251838889|gb|EES66974.1| hydrogenase, Fe-only [Bacteroides sp. 1_1_6]
Length = 588
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/394 (28%), Positives = 198/394 (50%), Gaps = 29/394 (7%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ E+ + L ++ + K VI+ +P RA+L E FG+ P V K+ L+ LG
Sbjct: 213 LTERDYTNRLLDDLADPDKIVIVQTAPAVRAALGEEFGLPPGTLVTGKMVYALRELGFDY 272
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E +E + R + + D + LP+L+S CP W+ + E +
Sbjct: 273 VFDTDFAADLTIMEEGSEILNRLTRYLDGD---KSVRLPILTSCCPAWVNFFEHHFPD-M 328
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ +SPQQ G+ K + +K+G +++ V++MPC KK E R++F
Sbjct: 329 LDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVVVSIMPCLAKKYECDRDEFKVN---- 384
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+P+VD ++T E+ LI+ + F + +SP D + G ++G
Sbjct: 385 ---------GVPDVDYSISTRELARLIKRANIGFTLVLDSPFDNPMGESTGAGVIFG--- 432
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQN 297
++GG E R + G+ ++ ++ F+ +R S R +++ G L K + +G N
Sbjct: 433 TTGGVMEAALRSVYEIYTGQPLK-NVNFEQVRGLSGVRRATIDLNGFEL-KVGIAHGLGN 490
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVM 355
++++ ++ +Y +E+MACP GC+ GGGQ P + L +Y E N
Sbjct: 491 ARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQ--PLHHGNSDVLYARANALYREDANKP 548
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L NP ++ LY+E+L +P EK++ +HT Y
Sbjct: 549 LRKSHDNPYIQKLYEEYLGKPLGEKSEMLLHTHY 582
>gi|239628401|ref|ZP_04671432.1| hydrogenase [Clostridiales bacterium 1_7_47_FAA]
gi|239518547|gb|EEQ58413.1| hydrogenase [Clostridiales bacterium 1_7_47FAA]
Length = 461
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 116/367 (31%), Positives = 194/367 (52%), Gaps = 24/367 (6%)
Query: 29 RASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQES 87
RA+L E FG+ V K+ L++LGV + DT+ + DLT++E +E I R
Sbjct: 102 RAALGEEFGMEDGSFVQGKMVALLRALGVDYVLDTNFAADLTIMEEASELIERITTG--- 158
Query: 88 DDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFR 147
+ LP +S CP W+ +AE +LP+ISS KSP G TIK + QK+G
Sbjct: 159 -----DRPLPQFTSCCPAWVKFAEIYYPE-MLPHISSAKSPIGMQGPTIKTYFAQKMGID 212
Query: 148 PDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQL 207
P I +V V PC KK E R+ ++++ + E ++ ++D V+TT E+ ++
Sbjct: 213 PKRIVNVAVTPCTAKKYEIRRQ----EMNAAGQYLGIE--DMRDMDYVITTRELAQWARM 266
Query: 208 KAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHL-EF 266
K ++F ALE+S D+++ G ++G ++GG E R A + + G L +
Sbjct: 267 KNIDFSALEDSDYDRLMGQGSGAGVIFG---NTGGVMEAALRTAYEYITGDKAPAVLYQL 323
Query: 267 KTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCL 325
+++R + +E +L+V G T+ A+ YG +L+ + ++K + Y FVEVM CP GC+
Sbjct: 324 ESVRGMEAVKEASLQVGGMTV-NVAVVYGTASLRRFLEQMKEGEKQYHFVEVMTCPGGCI 382
Query: 326 NGGGQIKPKPGQSPKELIKTLETIYLENVMLADPF--KNPLVRSLYDEWLEQPGSEKAKK 383
GGGQ K K + K ++++Y + + +N +++LY E+ +P S A+K
Sbjct: 383 GGGGQPKDKKFEGDALRQKRIDSLYKRDGAMKVRLSHENEEIKALYSEFYGKPLSGLAEK 442
Query: 384 HVHTEYH 390
+HT Y
Sbjct: 443 MLHTCYR 449
>gi|373497843|ref|ZP_09588360.1| hydrogenase, Fe-only [Fusobacterium sp. 12_1B]
gi|404366259|ref|ZP_10971644.1| hydrogenase, Fe-only [Fusobacterium ulcerans ATCC 49185]
gi|313689110|gb|EFS25945.1| hydrogenase, Fe-only [Fusobacterium ulcerans ATCC 49185]
gi|371962535|gb|EHO80131.1| hydrogenase, Fe-only [Fusobacterium sp. 12_1B]
Length = 644
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 113/382 (29%), Positives = 198/382 (51%), Gaps = 28/382 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
+ V++ ++P R ++ E FG + V KKL LK LGV +FDT+ + D+T++E +E
Sbjct: 286 RIVVVQVAPAVRVAIGEAFGFEAGTNVEKKLVGALKKLGVNYVFDTTWAADITVMEEASE 345
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F R ++ + DD LP+L+S CP W+ + E+ +L SSVKSP Q
Sbjct: 346 FQERLERFYKGDD---TVRLPILTSCCPAWVKFIEQNYPD-MLDVPSSVKSPMQIFSTIA 401
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K ++ G+ + + V +MPC KK EA+R +F S+ + Y + D V+
Sbjct: 402 KDIWAKEKGYVRERVSVVGIMPCLAKKYEASRPEF-----SRGDNY--------DTDYVI 448
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
+T E++ + + +N + +EE D L G ++G +GG E R + +
Sbjct: 449 STRELIKIFKESGINLKDIEEKEFDNPLGEYSGAGIIFG---RTGGVIEAATRSTIEMIT 505
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G ++ +EFK +R + FR L + G L+ + +G + ++ K++ + + +
Sbjct: 506 GTHLD-EIEFKELRGWEGFRTAELTI-GHIELRIGIAHGLEEAAKMLDKIRAGEEFFHAI 563
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWL 373
E+MAC GC+ GGGQ PK + + L K E + + + +NP V+++YD++L
Sbjct: 564 EIMACKGGCIGGGGQ--PKAVKKQETLEKRAEGLNAIDRGMKIRRSHENPYVKAIYDKYL 621
Query: 374 EQPGSEKAKKHVHTEYHPVVKS 395
+ P S KA + +HT+Y P +K+
Sbjct: 622 DYPLSHKAHELLHTKYFPKIKN 643
>gi|404493227|ref|YP_006717333.1| cytoplasmic NADPH oxidoreductase-associated [FeFe]-hydrogenase
[Pelobacter carbinolicus DSM 2380]
gi|77545287|gb|ABA88849.1| cytoplasmic NADPH oxidoreductase-associated [FeFe]-hydrogenase
[Pelobacter carbinolicus DSM 2380]
Length = 585
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 190/377 (50%), Gaps = 30/377 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K ++ +P RA+L E FGI + V K+ L+ +G +FDT + DLT++E +E
Sbjct: 228 KVTVVQTAPAVRAALGEEFGIEAGTSVTGKMVAALRQIGFDHVFDTDFAADLTIMEEGSE 287
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ R + + D ++ LP+++S CP W+ + E Q +L S+ KSP Q GA
Sbjct: 288 FLDRLTRHLDGD---TSVKLPIMTSCCPAWVKFFEHQFPD-LLDVPSTAKSPMQMFGAVA 343
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + + LG +++ V++MPC KK E +R +F+ + P+VD L
Sbjct: 344 KSYYAELLGIPREKMVVVSIMPCLAKKYECSRPEFMVDGN-------------PDVDITL 390
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
+T E+ LI+L + F AL + D L ++GV +GG E R A +
Sbjct: 391 STRELARLIKLMNIEFNALPDEDFDAPLGYSTGAAVIFGV---TGGVIEAALRTAYELHT 447
Query: 257 GKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVE 316
G+ ++ ++F+ +R D + A G L + + N + ++ +++ K Y +E
Sbjct: 448 GEKLD-KVDFEDVRGMDGVKSAKVQVGSHTLNIGVAHKLGNARKLLEEIREGKSQYHAIE 506
Query: 317 VMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADP----FKNPLVRSLYDEW 372
+M+CP GC+ GGGQ P + L K IY E+ LA P +NP + LY+++
Sbjct: 507 IMSCPGGCIGGGGQ--PYHHGDVELLKKRTAAIYDED--LAKPERKSHENPYIVELYEKY 562
Query: 373 LEQPGSEKAKKHVHTEY 389
L +P SEKA +HT Y
Sbjct: 563 LGKPLSEKAHHLLHTHY 579
>gi|269119252|ref|YP_003307429.1| hydrogenase, Fe-only [Sebaldella termitidis ATCC 33386]
gi|268613130|gb|ACZ07498.1| hydrogenase, Fe-only [Sebaldella termitidis ATCC 33386]
Length = 587
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 199/393 (50%), Gaps = 27/393 (6%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
++E+ + + LS + + K VI+ +P R +L E FG +P V K+ + L+ LG
Sbjct: 212 LVERDATWDVLSALADPTKTVIVQTAPAVRVALGEEFGYAPGTSVTGKMVSSLRKLGFDR 271
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E +E + R + D ++ LP+L+S CP W+ + E +
Sbjct: 272 VFDTDFAADLTIMEEASELLDRLTRHLNGD---TSVKLPILTSCCPAWVKFFEHNFND-L 327
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ KSP Q A K+ ++L ++ V+VMPC KK EA RE+F S+
Sbjct: 328 LDVPSTAKSPMQMFSAVAKNVFAKELNVDRKDLIVVSVMPCLAKKYEAGREEF-----SK 382
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+ + + D VL+T E+ LI+ +NF L++ D L G ++G
Sbjct: 383 DGDF--------DTDIVLSTRELARLIKQANINFNILKDEEFDNPLGESTGAGVIFG--- 431
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNL 298
+GG E R AA GK +E +++++ +R + A G LK + +G
Sbjct: 432 RTGGVIEAALRTAADWYTGKSLE-NIDYEAVRGFEGVRSADVKVGDLDLKIGIAHGLGEA 490
Query: 299 QNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VML 356
+ ++ +V+ K Y +E+MAC GC+ GGGQ P + L K E I +E+ +
Sbjct: 491 RKLLEEVREGKSMYHAIEIMACKGGCIGGGGQ--PYHHGNTSILRKRTEAIKIEDESKAI 548
Query: 357 ADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+NP ++ LY+E+ ++P S +A + +HT+Y
Sbjct: 549 RKSHENPYIKKLYNEYFKEPMSHQAHELLHTKY 581
>gi|404494164|ref|YP_006718270.1| cytoplasmic NADPH oxidoreductase-associated [FeFe]-hydrogenase
[Pelobacter carbinolicus DSM 2380]
gi|77546179|gb|ABA89741.1| cytoplasmic NADPH oxidoreductase-associated [FeFe]-hydrogenase
[Pelobacter carbinolicus DSM 2380]
Length = 598
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 114/399 (28%), Positives = 200/399 (50%), Gaps = 41/399 (10%)
Query: 1 MLEKQSLDEFLSNINKGKA-VIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ E+ +E + +N + ++ +P +R +L E F + P V ++ T + +G
Sbjct: 209 LAERDDTEEVIDYLNDPEMFTVVQFAPATRVALGEEFNMKPGSNVEGQMITAFRKMGADV 268
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+ DT+ + D+ ++E +E + R K+ +LP+L+S PGWI Y EK I
Sbjct: 269 VLDTNFTADVVIMEEGSELLHRVKE---------GGTLPLLTSCSPGWINYVEKFYPDMI 319
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+S+ KSPQQ +GA K ++ +K+ P ++ +++MPC KK EA R +F
Sbjct: 320 C-NLSTTKSPQQCLGAIAKTYLAEKMAIDPAKMRVISIMPCTAKKEEAKRPEFTIG---- 374
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA- 237
+ PEVD VLTT E+ L++ + + LEE D V G A
Sbjct: 375 ---------DRPEVDVVLTTRELGSLLKREGIWLPDLEEGNFDNPWMGV-----ATGAAE 420
Query: 238 --GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYG 294
GS+GG E R + G+ I G ++ K +R + RE ++++ + A+
Sbjct: 421 IFGSTGGVMEAAVRTVHYIVTGEEIPG-VDLKAVRGLEGIREASVDLGELGTVNVAIANS 479
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE-- 352
++ + ++ +V+ + +Y F+EVMACP GC+ GGGQ PK ++ +E + + +
Sbjct: 480 LKSARELLERVRSGEKEYHFIEVMACPGGCMGGGGQ--PKHKRNYREFLTARQKAIYDID 537
Query: 353 -NVMLADPFKNPLVRSLYDEWLEQP-GSEKAKKHVHTEY 389
L +NPLV+ +YD + +P SE++ K++HT Y
Sbjct: 538 AGSELRQSHRNPLVKEMYDSYFGEPYSSERSHKYLHTTY 576
>gi|379010694|ref|YP_005268506.1| iron hydrogenase HydA2 [Acetobacterium woodii DSM 1030]
gi|375301483|gb|AFA47617.1| iron hydrogenase HydA2 [Acetobacterium woodii DSM 1030]
Length = 459
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 118/391 (30%), Positives = 185/391 (47%), Gaps = 43/391 (10%)
Query: 13 NINKGKAVI--------ISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTS 63
N++K KA + + +P R +AE FG V KL L +G ++DT+
Sbjct: 89 NLDKVKAALADPDVITMVQCAPAVRVGIAEDFGAELGTVAAGKLAAALHKIGFDRVYDTN 148
Query: 64 CSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYIS 123
+ DLT++E E I R + LPM +S CP W+ + E+ ++S
Sbjct: 149 FTADLTIMEEGTELIKRITEGA--------GKLPMFTSCCPAWVTFLERNYPDQ-KDHLS 199
Query: 124 SVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYR 183
+ KSPQQ +GA K + + + P +I+ V+VMPC K+ E RE+ Y+
Sbjct: 200 TCKSPQQ-MGAIFKTYGAKLDNYDPAKIFTVSVMPCTCKEFECNREEM------NSSGYQ 252
Query: 184 DEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGY 243
D +D +TT E+ LI+ ++F AL + D+ L G ++GV +GG
Sbjct: 253 D-------IDVAITTRELAYLIKDMDIDFNALADEDFDQPLGEYTGAGTIFGV---TGGV 302
Query: 244 AETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIV 302
E R + + GK I ++ +R S+ FR L+V G LK + G N+ ++
Sbjct: 303 MEAAIRTGYELITGKPIP-DIDVSAVRGSNAFRTATLKV-GDLDLKVGIVTGLANVIPVM 360
Query: 303 RKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLET--IYLENVMLA--D 358
+K K D F+EVM CP GC++GGGQ K S KE T IY + L
Sbjct: 361 EDLKAGKLDLHFIEVMTCPVGCVSGGGQPKLLL-DSEKEAAYESRTKGIYTHDAELPIRK 419
Query: 359 PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+NP + +Y+E+L P +++ +HT Y
Sbjct: 420 SHENPAITKIYEEYLLSPNGKESHHMLHTHY 450
>gi|347944122|gb|AEP27833.1| FeFe-hydrogenase [Clostridium sartagoforme]
Length = 300
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 162/320 (50%), Gaps = 36/320 (11%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
N+ K VI++++P R ++ E F + + V KL T L+ LG IFD + D+T++E
Sbjct: 12 NEEKHVIVAMAPSVRTAMGELFKMGYGVDVTGKLYTALRHLGFDKIFDINFGADMTIMEE 71
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSY---ILPYISSVKSPQQ 130
E + R K + PM +S CP W+ +Q+ +Y L +SS KSPQQ
Sbjct: 72 ATELVQRIK---------AGGPFPMFTSCCPAWV----RQVENYYPKFLENLSSAKSPQQ 118
Query: 131 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 190
G K + Q P ++ VT+MPC KK EA R + ++GL
Sbjct: 119 IFGTASKTYYPQVADIDPKRVFTVTIMPCTAKKYEADRPEM-----------ENDGLR-- 165
Query: 191 EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH 250
+D+V+TT E+ +I+ ++F L++S D + G ++ G++GG E R
Sbjct: 166 NIDAVITTRELAKMIKDAKIDFAKLDDSEADPAMGEYTGAGAIF---GATGGVMEAALRS 222
Query: 251 AAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRK 309
A + GK +E ++E++ +R + +E +E+ G++ A+ G N+ + + K
Sbjct: 223 AKDFVEGKDLE-NIEYEQVRGLAGIKEATVEIGGES-YNIAVINGASNVFSFMNSDNFDK 280
Query: 310 CDYQFVEVMACPSGCLNGGG 329
Y F+EVMACP GC++GGG
Sbjct: 281 KKYHFIEVMACPGGCVSGGG 300
>gi|374997756|ref|YP_004973255.1| hydrogenase, Fe-only [Desulfosporosinus orientis DSM 765]
gi|357216122|gb|AET70740.1| hydrogenase, Fe-only [Desulfosporosinus orientis DSM 765]
Length = 580
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 196/396 (49%), Gaps = 38/396 (9%)
Query: 1 MLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
++E +D+ +N + VI+ +P R +L E FG+ P + K+ L+ LG
Sbjct: 210 LMELDQVDKVWKALNDPNRFVIVETAPAVRVALGEGFGLEPGTIVTGKMVAALRRLGFDR 269
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT D+T++E E I R + LP+L+S CP W+ + E Q +
Sbjct: 270 VFDTEFGADVTIMEEATELIHRLEH---------GGRLPILTSCCPAWVKFFEHQFPD-L 319
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ KSP + +G K + + G P +I V+VMPC KK EAAR + Q
Sbjct: 320 LDIPSTCKSPHEMLGVLSKSYYAEAYGIDPKKITVVSVMPCIAKKYEAARPEL-----GQ 374
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA- 237
+ P+VD V+TT E+ +I+ ++FE L++ D L G G A
Sbjct: 375 DPV-------TPDVDIVITTRELSRMIREAGIHFEHLKDEEFDHPL------GESTGAAV 421
Query: 238 --GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGF 295
G++GG E R A + L G +E ++EF+ +R + + A+ G+ K A+ +G
Sbjct: 422 VFGTTGGVIEAALRTAYEWLTGHPLE-NVEFEPLRGMEGIKEAVIPIGERDFKIAVTHGL 480
Query: 296 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM 355
N + I+ K++ + Y +E+MACP GC+ GGGQ P + + L IY E+
Sbjct: 481 GNARTILEKIQAGESHYDAIEIMACPGGCIGGGGQ--PYHHGNLEILQARANAIYQEDRS 538
Query: 356 --LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +NP V LY+E++ +P +KA + +HT +
Sbjct: 539 KPLRKSHENPAVIKLYNEYIGKPYGDKAHELLHTSF 574
>gi|298375635|ref|ZP_06985592.1| hydrogenase large subunit HymC [Bacteroides sp. 3_1_19]
gi|298268135|gb|EFI09791.1| hydrogenase large subunit HymC [Bacteroides sp. 3_1_19]
Length = 596
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 115/376 (30%), Positives = 185/376 (49%), Gaps = 28/376 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI +P R +L FG P V K+ + L+ LG +FDT + DLT++E E
Sbjct: 228 KIVIAQTAPAVRTALGRDFGYEPGTLVTGKMVSALRQLGFDYVFDTDFAADLTIMEEGTE 287
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R D E +P+++S CPGW+ + E+ + ++S+ KSPQQ GA
Sbjct: 288 LLHRLGSYLNGDKE---VKIPLMTSCCPGWVSFVEQHFPE-LRDHLSTAKSPQQMFGAIA 343
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +KLG ++ V++MPC KK EA+R +F + + P+VD +
Sbjct: 344 KSYFAEKLGVDRKDLVVVSIMPCLAKKYEASRPEFSVEGN-------------PDVDYSI 390
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
T E+ LI+ ++F L + D+ L ++ G++GG E R A + L+
Sbjct: 391 YTRELARLIRYANIDFNELPDGEFDRPLGESTGASVIF---GTTGGVIEAACRTAYE-LY 446
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
K ++F+ +R + R ++ G T +K + +G N + ++ +VK Y +
Sbjct: 447 TKKNLDKVDFEELRGLEGIRSATIDFNG-TSVKIGIAHGLGNARKLIEEVKNGTSPYHAI 505
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWL 373
EVMACP GC+ GGGQ P + L + +Y E N L +NP ++ LY E+L
Sbjct: 506 EVMACPGGCIGGGGQ--PFHRGRMEVLRRRAAALYREDANKPLRKSHENPYIQQLYSEYL 563
Query: 374 EQPGSEKAKKHVHTEY 389
+P KA K +HT Y
Sbjct: 564 GEPCGPKAHKLLHTHY 579
>gi|338811197|ref|ZP_08623427.1| hydrogenase, Fe-only [Acetonema longum DSM 6540]
gi|337276808|gb|EGO65215.1| hydrogenase, Fe-only [Acetonema longum DSM 6540]
Length = 562
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/363 (27%), Positives = 184/363 (50%), Gaps = 38/363 (10%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K V++ ++P R + + G++ + V ++ LK +G +FDTS DLT++E
Sbjct: 220 DKDTKVVVQIAPAVRVGIGQELGLADGENVMGRIVAALKRIGFDEVFDTSTGADLTVLEE 279
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
EF AR ++ ++ LP+ +S CP W+ YAE ++ IS+ +SP Q
Sbjct: 280 AGEFTARLQKEEK---------LPLFTSCCPAWVRYAELHY-PQLMYKISTCRSPMQMFA 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+ +K H G ++ V +MPC KK EAAR++F + +G +P VD
Sbjct: 330 SVMKEH----YGHSHRKVVVVAIMPCTAKKYEAARDEF-----------KKDG--VPYVD 372
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
V+TT E++ +I+ + F +E +D G ++GV +GG E V R A
Sbjct: 373 YVITTQELIQMIREAGIVFSEIEPEAVDMPFGAASGAGVIFGV---TGGVTEAVIRRIAD 429
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ + F +R +E ++ ++G+ + + A+ G +N +++ K++ + Y
Sbjct: 430 DKSVSALRA-IAFTGVRGLQGVKEASIVLDGREV-RIAVVSGLKNADSLIHKIRSGEKKY 487
Query: 313 QFVEVMACPSGCLNGGGQ-IKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDE 371
F+EVMACP GC+ G GQ + + G++ K + E + ++ ++ +NP++ +LYD
Sbjct: 488 DFIEVMACPGGCICGAGQPVAGREGRN-KRSVGLYEADRMSSIKRSE--ENPIIMALYDG 544
Query: 372 WLE 374
L+
Sbjct: 545 LLK 547
>gi|256839950|ref|ZP_05545459.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides sp. D13]
gi|256738880|gb|EEU52205.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides sp. D13]
Length = 596
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 115/376 (30%), Positives = 185/376 (49%), Gaps = 28/376 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI +P R +L FG P V K+ + L+ LG +FDT + DLT++E E
Sbjct: 228 KIVIAQTAPAVRTALGRDFGYEPGTLVTGKMVSALRQLGFDYVFDTDFAADLTIMEEGTE 287
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R D E +P+++S CPGW+ + E+ + ++S+ KSPQQ GA
Sbjct: 288 LLHRLGSYLNGDKE---VKIPLMTSCCPGWVSFVEQHFPE-LRDHLSTAKSPQQMFGAIA 343
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +KLG ++ V++MPC KK EA+R +F + + P+VD +
Sbjct: 344 KSYFAEKLGVDRKDLVVVSIMPCLAKKYEASRPEFSVEGN-------------PDVDYSI 390
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
T E+ LI+ ++F L + D+ L ++ G++GG E R A + L+
Sbjct: 391 YTRELARLIRYANIDFNELPDGEFDRPLGESTGASVIF---GTTGGVIEAACRTAYE-LY 446
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
K ++F+ +R + R ++ G T +K + +G N + ++ +VK Y +
Sbjct: 447 TKKNLDKVDFEELRGLEGIRSATIDFNG-TPVKIGIAHGLGNARKLIEEVKNGTSPYHAI 505
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWL 373
EVMACP GC+ GGGQ P + L + +Y E N L +NP ++ LY E+L
Sbjct: 506 EVMACPGGCIGGGGQ--PFHRGRMEVLRRRAAALYREDANKPLRKSHENPYIQQLYSEYL 563
Query: 374 EQPGSEKAKKHVHTEY 389
+P KA K +HT Y
Sbjct: 564 GEPCGPKAHKLLHTHY 579
>gi|404493256|ref|YP_006717362.1| cytoplasmic NADPH oxidoreductase-associated [FeFe]-hydrogenase
[Pelobacter carbinolicus DSM 2380]
gi|77545315|gb|ABA88877.1| cytoplasmic NADPH oxidoreductase-associated [FeFe]-hydrogenase
[Pelobacter carbinolicus DSM 2380]
Length = 585
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 187/375 (49%), Gaps = 26/375 (6%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K ++ +P RA+L E G+ P Q V K+ L+ LG +FDT + DLT++E +E
Sbjct: 228 KVTVVQTAPAVRAALGEACGMEPGQSVTGKMAAALRRLGFDHVFDTDFAADLTIMEEGSE 287
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ R ++ + D N LP+++S CPGW+ + E Q +L S+ KSPQQ GA
Sbjct: 288 FLDRLQKFLDGD---KNVRLPIMTSCCPGWVKFFEHQFPD-MLDVPSTAKSPQQMFGAIA 343
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + + LG +++ V+VMPC KK E +R +F + P+VD V+
Sbjct: 344 KSYYAEILGIPREKMVVVSVMPCLAKKYECSRPEFAVNGN-------------PDVDIVI 390
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
+T E+ LI+ ++F L + D L ++ G+SGG E R A +
Sbjct: 391 STRELGRLIKRMNIDFAKLPDEDFDAPLGASTGAAPIF---GNSGGVMEAALRTAYELAT 447
Query: 257 GKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVE 316
G+ + +EF+ +R + A G L + G N + ++ V+ + + +E
Sbjct: 448 GETLPA-VEFEAVRTLTGVKTAEIQVGPHTLNVGVASGLGNARKLLEMVRNGEKQFHVIE 506
Query: 317 VMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDEWLE 374
+MACP GC+ GGGQ P + L K + +Y E+ L +NP + LY+++L
Sbjct: 507 IMACPGGCIGGGGQ--PYHHGDMEILAKRNQVLYNEDAGKELRKSHENPYIIELYEKYLG 564
Query: 375 QPGSEKAKKHVHTEY 389
+P SEKA +HT Y
Sbjct: 565 KPLSEKAHHLLHTHY 579
>gi|409198877|ref|ZP_11227540.1| hydrogenase, Fe-only [Marinilabilia salmonicolor JCM 21150]
Length = 589
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 114/380 (30%), Positives = 194/380 (51%), Gaps = 28/380 (7%)
Query: 14 INKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
++ K V++ +P RA+L E FG+ P V K+ + L+ LG +FDT + DLT++E
Sbjct: 224 VDPTKTVVVQTAPAVRAALGESFGMEPGTLVTGKMVSALRKLGFDYVFDTDFAADLTIME 283
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
E + R + D E LP+L+S CPGW+ + E Q ++ S+ KSPQQ
Sbjct: 284 EGTELLDRLNRHLNGDQE---VKLPILTSCCPGWVKFFEHQFPE-MMDVPSTSKSPQQMF 339
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
G+ K + +K+ + +++ V+VMPC KK E RE+F D P+V
Sbjct: 340 GSIAKSYFAKKMNKKREDLVVVSVMPCLAKKYECTREEFSVNGD-------------PDV 386
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
+ ++T E+ LI+ ++F L + D+ L ++G ++GG E R A
Sbjct: 387 NVSISTRELAQLIRNANLDFAVLPDDDFDQPLGESTGASVIFG---TTGGVIEAAVRTAY 443
Query: 253 KTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD 311
+ GK +E ++F +R + R+ ++ +G L + +G N + ++ +VK K +
Sbjct: 444 ELHTGKHLE-KVDFTELRGMEGSRKATVDFDGLKL-NIGIAHGLGNARKLLEEVKSGKSE 501
Query: 312 YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLY 369
+ +E+MACP GC+ GGGQ P + L K IY E+ + +NP ++ LY
Sbjct: 502 FHAIEIMACPGGCIGGGGQ--PYHHGNVDILKKRQRAIYEEDKGKPIRKSHENPFIQQLY 559
Query: 370 DEWLEQPGSEKAKKHVHTEY 389
E+L +P S+ + + +HT Y
Sbjct: 560 KEFLGKPMSDLSHELLHTHY 579
>gi|24375408|ref|NP_719451.1| periplasmic [Fe-Fe] hydrogenase large subunit HydA [Shewanella
oneidensis MR-1]
gi|24350246|gb|AAN56895.1| periplasmic [Fe-Fe] hydrogenase large subunit HydA [Shewanella
oneidensis MR-1]
Length = 410
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 168/327 (51%), Gaps = 23/327 (7%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K V+ ++P R ++ E FG+ + V KL + G K IFD + + DLT++E
Sbjct: 83 DKNTTVVGIIAPAVRVAIGEEFGLGTGELVTGKLYGAMNQAGFK-IFDCNFAADLTIMEE 141
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EFI R + + E + LP +S CPGW+ Y E + + +LP +S+ KSPQQ G
Sbjct: 142 GSEFIHRLHANVKG--EANAGPLPQFTSCCPGWVRYLETRYPA-LLPNLSTAKSPQQMAG 198
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP--- 190
K + + +P+ I+ V+VMPC KKLEA+R +F +S + +++ G P
Sbjct: 199 TVAKTYGAKVYQMQPENIFTVSVMPCTSKKLEASRPEF----NSAWQYHQEHGANSPSYQ 254
Query: 191 EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH 250
++D+VLTT E+ L++L ++ E D + + G ++ G++GG E R
Sbjct: 255 DIDAVLTTREMAQLLKLLDIDLANTAEYQGDSLFSEYTGAGTIF---GTTGGVMEAALRT 311
Query: 251 AAKTLFGKVIEGHLEF------KTIRNSDFREVALEVEGKTLLKFALCYGF-QNLQNIVR 303
A K L G + LEF K ++++ E+ + A+ + N++ ++R
Sbjct: 312 AHKVLTGTEM-AKLEFEPVRGLKGVKSASVSLFDTELNQDVTVNVAVVHDMGNNIEPVLR 370
Query: 304 KVKMRKCDYQFVEVMACPSGCLNGGGQ 330
V Y F+EVM C GC+NGGGQ
Sbjct: 371 DVMAGTSPYHFIEVMNCAGGCVNGGGQ 397
>gi|225709820|gb|ACO10756.1| Nuclear prelamin A recognition factor-like protein [Caligus
rogercresseyi]
Length = 342
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 148/285 (51%), Gaps = 27/285 (9%)
Query: 1 MLEKQSLDEFLSNIN-KGK---AVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGV 56
++E QS DE + KG +++SLS QS SL+ F + L+ + + + K+LGV
Sbjct: 79 LVEAQSTDELRRRLKAKGSLYDVIVVSLSTQSILSLSHKFNLPILESSRLIIHYFKTLGV 138
Query: 57 KSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGS 116
I++ DL+L E E + R +S + P+LSS+CPGWICYAEK G
Sbjct: 139 DYIYNLKTCEDLSLQEQSAELLQRLSESSKGG--------PLLSSSCPGWICYAEKTHGE 190
Query: 117 YILPYISSVKSPQQTIGATIKHHICQK-LGFRPDEIYHVTVMPCYDKKLEAAREDFVFQL 175
+ILPYIS VKSPQQ +G+ +KH + K P+ I HV+VMPC+DKKLEA+R DF
Sbjct: 191 WILPYISRVKSPQQIMGSLLKHWLSHKQFKAPPERICHVSVMPCFDKKLEASRRDFT--- 247
Query: 176 DSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG 235
DSQ P+VD T+ E+ ++ V+F E PL L + LY
Sbjct: 248 DSQ---------GTPDVDLATTSIELEQMMLSDGVSFSPPPEVPLFDSLFG-ESSSDLYV 297
Query: 236 VAGSS-GGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVAL 279
GS GG E+VF + +L G V L+ + S +L
Sbjct: 298 NHGSGFGGACESVFINPITSLSGXVPSSPLKVQDAEKSGLYGASL 342
>gi|88660702|gb|ABD48098.1| periplasmic Fe-hydrogenase large subunit [Shewanella
decolorationis]
Length = 410
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 169/327 (51%), Gaps = 23/327 (7%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K V+ ++P R ++ E FG+ + V KL + G K IFD + + DLT++E
Sbjct: 83 DKNTTVVGIIAPAVRVAIGEEFGLGTGELVTGKLYGAMNQAGFK-IFDCNFAADLTIMEE 141
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EFI R + + E + +LP +S CPGW+ Y E + + +LP +S+ KSPQQ G
Sbjct: 142 GSEFIHRLHANVKG--EENAGALPQFTSCCPGWVRYLETRYPA-LLPNLSTAKSPQQMAG 198
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP--- 190
K + + +P+ I+ V+VMPC KKLEA+R +F +S + +++ G P
Sbjct: 199 TVAKTYGAKVYQMQPENIFTVSVMPCTSKKLEASRPEF----NSAWQYHQEHGANAPSYQ 254
Query: 191 EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH 250
++D+VLTT E+ L+++ ++ E D + + G ++ G++GG E R
Sbjct: 255 DIDAVLTTREMAQLLKMLDIDLANTPEYQGDSLFSEYTGAGTIF---GTTGGVMEAALRT 311
Query: 251 AAKTLFGKVIEGHLEFKTIRNSDFREVA------LEVEGKTLLKFALCYGF-QNLQNIVR 303
A K L G + LEF+ +R + A ++ + A+ + N++ ++R
Sbjct: 312 AHKVLTGTEM-AKLEFEPVRGLKGVKSASVSLFDTQLNQNVTVNVAVVHDMGNNIEPVLR 370
Query: 304 KVKMRKCDYQFVEVMACPSGCLNGGGQ 330
V Y F+EVM C GC+NGGGQ
Sbjct: 371 DVMAGTSPYHFIEVMNCAGGCVNGGGQ 397
>gi|330836325|ref|YP_004410966.1| hydrogenase, Fe-only [Sphaerochaeta coccoides DSM 17374]
gi|329748228|gb|AEC01584.1| hydrogenase, Fe-only [Sphaerochaeta coccoides DSM 17374]
Length = 577
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 117/388 (30%), Positives = 192/388 (49%), Gaps = 38/388 (9%)
Query: 10 FLSNINKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDL 68
F + N K +I ++P RA+ E G+ + K+L L+ +G +FDT+ S DL
Sbjct: 213 FQAIANPKKITVIQIAPAVRAAWGEALGLPREKATVKRLVAALRKIGFDYVFDTTFSADL 272
Query: 69 TLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSP 128
T++E +EF+ R R++ PM +S CPGW+ + + Q + +S+ KSP
Sbjct: 273 TIMEEGHEFLERLAG-------RNDHPWPMFTSCCPGWVRFIKSQYPD-MTENLSTAKSP 324
Query: 129 QQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE 188
QQ GA K + Q LG P +I+ V++MPC KK EA E ++
Sbjct: 325 QQMFGAVAKTYYAQLLGANPADIFSVSIMPCVAKKSEA------------ELPTMNDAEA 372
Query: 189 IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVF 248
+VD VLTT E++ +I+ + ++ ++LEE D L G ++G ++GG E
Sbjct: 373 AQDVDLVLTTREIVRMIRAEKIDVKSLEEEEFDSPLGVGTGAGVIFG---ATGGVMEAAL 429
Query: 249 RHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKM 307
R A + K E F+ +R D ++E ++ G ++ A+ G N + ++ V+
Sbjct: 430 RSAYYLVTKKNPEAD-AFRDVRGMDGWKEATFDIAG-IPVRVAVVSGLANTRRLMEHVRS 487
Query: 308 RKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIY-----LENVMLADPFKN 362
K Y FVEVMACP GC+ GGGQ P +EL T + ++N+ + +N
Sbjct: 488 GKSSYDFVEVMACPGGCVGGGGQ----PIWDGEELASTRADVLYGLDKVDNLRFS--HEN 541
Query: 363 PLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
P V Y+ + +P K + +HT++H
Sbjct: 542 PSVLKAYESFFGKPLGHKCHELLHTDHH 569
>gi|365166757|ref|ZP_09360564.1| hydrogenase, Fe-only [Synergistes sp. 3_1_syn1]
gi|363619441|gb|EHL70757.1| hydrogenase, Fe-only [Synergistes sp. 3_1_syn1]
Length = 581
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 126/390 (32%), Positives = 203/390 (52%), Gaps = 41/390 (10%)
Query: 10 FLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKSIFDTSCSRDL 68
F + + K I+ +P +R +L E G+ ++ K+ L+ LG +FDT S DL
Sbjct: 216 FAALADPKKYTIVQTAPATRVALGEALGLPAGEIVTGKMVAALRRLGFDKVFDTDFSADL 275
Query: 69 TLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSP 128
T++E +EF+ R + LPM++S PGWI + E + +LP++S+ KSP
Sbjct: 276 TIMEEGHEFLDRVV---------NGGVLPMITSCSPGWINFIEIKYPD-LLPHLSTAKSP 325
Query: 129 QQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLE 188
Q GA K + + G ++IY V++MPC KK E R QL S
Sbjct: 326 QGMFGALAKTYWPETQGIHVEDIYSVSIMPCTAKKAECVRP----QLQSNPG-------- 373
Query: 189 IPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVF 248
IP+VD+VLTT E+ +I+ ++F+ L E D L + ++GV +GG E
Sbjct: 374 IPDVDTVLTTRELARMIKNAGIDFKNLPEEDYDSPLGSSTGAAVIFGV---TGGVMEAAL 430
Query: 249 RHAAKTLF-GKVIEGHLEFKTIRNSD-FREVALEVE--GKTL-LKFALCYGFQNLQNIVR 303
R L GK I G + F+ +R + +E +++V G+T+ +K A+ + +N + ++
Sbjct: 431 RTVYAVLNEGKDIPGII-FQPVRGMEGIKEASVDVPVGGQTVTVKLAVAHTLKNAKILMD 489
Query: 304 KVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLET--IYLEN--VMLADP 359
K++ + DY F+EVMACP GC+ GGGQ +P + I+ T +Y E+ L
Sbjct: 490 KIRAGEADYHFIEVMACPGGCIGGGGQPQPVNAE-----IRAARTAAVYREDECKTLRQS 544
Query: 360 FKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
KNP + +LY++WL +P EK+ +HT Y
Sbjct: 545 HKNPDIVALYEKWLGKPLGEKSHHLLHTHY 574
>gi|51894344|ref|YP_077035.1| iron hydrogenase [Symbiobacterium thermophilum IAM 14863]
gi|51858033|dbj|BAD42191.1| iron hydrogenase [Symbiobacterium thermophilum IAM 14863]
Length = 596
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 119/389 (30%), Positives = 189/389 (48%), Gaps = 34/389 (8%)
Query: 14 INKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72
++ K V++ +P R + E FG+ P V K+ L+ LG +FDT S DLT++E
Sbjct: 226 LDPTKHVVVQTAPAVRVQIGEPFGLPPGAVSTGKMVAGLRRLGFDQVFDTVFSADLTIME 285
Query: 73 ACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTI 132
E I R ++ LP+++S PGW+ +AE +L +S+ KSPQQ
Sbjct: 286 EATELIQRLQK---------GGPLPLITSCSPGWVKFAE-HFFPNMLENLSTCKSPQQMF 335
Query: 133 GATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV 192
GA K + +K G P ++ V+VMPC KK EA R + RD G + +V
Sbjct: 336 GALAKTYYAEKAGIDPADMVVVSVMPCTAKKYEANRPEM-----------RDSGYQ--DV 382
Query: 193 DSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAA 252
D VLTT E+ + + ++ +L + D L G ++ G++GG E R AA
Sbjct: 383 DYVLTTRELARMFRQAGIDLPSLPDEEFDNPLGIGTGAGTIF---GTTGGVMEAALRTAA 439
Query: 253 KTLFGKVIEGHLEFKTIRNSDF--REVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC 310
L +EF+ +R F RE + ++G T L A+ G ++ +V +
Sbjct: 440 AWLEPGSPSPKIEFQEVRGIPFQVREATVTLDGVT-LNVAVANGLGAAGWLMEEVSAGRK 498
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL----ENVMLADPFKNPLVR 366
+Y F+E+M CP GC+ GGGQ P G + ++ L E + + +NP ++
Sbjct: 499 NYHFIEIMGCPGGCIGGGGQPIPAKGPDALDEVRLARIASLYTIDERMTIRRSHENPAIQ 558
Query: 367 SLYDEWLEQPGSEKAKKHVHTEYHPVVKS 395
+Y E+L +PGSE+A +HT Y V +
Sbjct: 559 QVYAEYLGKPGSERAHHLLHTHYQARVPA 587
>gi|51947501|gb|AAU14235.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
Length = 1198
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 124/415 (29%), Positives = 205/415 (49%), Gaps = 44/415 (10%)
Query: 1 MLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVFKK--LTTFLKSLGVK 57
+ EK + L IN K V+ ++P R ++AE FG P + K + T L+ LG
Sbjct: 225 ITEKSEIRPVLDAINDPTKTVVFQMAPSIRVAVAEEFGFKPGEKILKNEIATALRKLGSN 284
Query: 58 S-IFDTSCSRDLTLIEACNEFIARYKQSQESD----DERSNSSLPMLSSACPGWICYAEK 112
+ DT+ S DLT+IE +E I R ++ D+ LPML+S CPGWI + EK
Sbjct: 285 VFVLDTNFSADLTIIEEGHELIERLYRNVTGKKLLGDDHMPIELPMLTSCCPGWIMFMEK 344
Query: 113 QLGSYILPYISSVKSPQQTIGATIKHHICQKLG-FRPDEIYHVTVMPCYDKKLEAAREDF 171
+L ++S+ KSPQ +GA IK + + + P +I V++MPC KK E R
Sbjct: 345 NYPD-MLNHLSTCKSPQGMLGALIKGYWAKNIKKMDPKDIVSVSIMPCTAKKAEKERPQL 403
Query: 172 VFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEG 231
+E Y+D VD +LTT E+ +++ ++ +E +P DK+++
Sbjct: 404 -----RGDEGYKD-------VDYILTTRELAKMLKQSNIDLGKMEPTPFDKVMSEGTGAA 451
Query: 232 HLYGVAGSSGGYAETVFRHAAKTLFGKVIE-GHLEFKTIRNSD-FREVALEVEG------ 283
++GV +GG E R A + + G+ + +L + +R D RE +++E
Sbjct: 452 VIFGV---TGGVMEAALRTAYEVITGREVPFKNLNIEAVRGMDGIREAGIKLENVLDKYK 508
Query: 284 ---KTLLKFALCYGFQNLQNIVRKVKMRK-----CDYQFVEVMACPSGCLNGGGQIKPKP 335
+K A+ +G N + ++ +K K + FVEVMACP GC+ GGGQ PKP
Sbjct: 509 AFEGVTVKVAIAHGPNNARKVMDIIKRAKDSGKPAPWHFVEVMACPGGCIGGGGQ--PKP 566
Query: 336 GQSPKELIKTLETIYLE-NVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+T T + ++ L NP ++++Y+ +L++P + ++HT Y
Sbjct: 567 TNLEIRQARTKLTFKEDMDLPLRKSHDNPEIKAIYETYLKEPLGHNSHHYLHTTY 621
>gi|381168353|ref|ZP_09877549.1| Hydrogenase, Fe-only [Phaeospirillum molischianum DSM 120]
gi|380682503|emb|CCG42367.1| Hydrogenase, Fe-only [Phaeospirillum molischianum DSM 120]
Length = 641
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 118/404 (29%), Positives = 186/404 (46%), Gaps = 55/404 (13%)
Query: 1 MLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKS 58
+ E+ DE + ++ K V+I +P RA++ E FG+ + QV +L T LK +G
Sbjct: 237 LTEQDQTDEVWAMLDDPTKHVVIQTAPSPRAAIGECFGLEAGTQVTYQLNTALKRMGFDG 296
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT+ + DLT+IE E I R Q+ D ++ +LP +S PGW+ Y E
Sbjct: 297 VFDTNHTADLTIIEEGTELIIRLYQALVQGD--TDIALPQFTSCSPGWVKYLE-HFYPNA 353
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+P +SS KSP Q GA +K + K G P +I V +MPC KK E R +
Sbjct: 354 VPNLSSAKSPMQMFGALLKTYYADKKGIDPKDIVVVALMPCTAKKFECNRPELC------ 407
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
++D VD LTT E+ +I ++ L +SP D+ + G+++ G
Sbjct: 408 SSGFKD-------VDYALTTRELAKMIAESGIDLPHLPKSPFDEPFGDGTGSGNIF---G 457
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGH------LEFKTIRNSDFREVALEVEGK-------- 284
++GG E R + + G+ +E L + I + E+ + G+
Sbjct: 458 ATGGVMEAALRTVIEVVTGQKVENFFDHANILPVRGIEGARMAEIPITEVGQVPDLFKSL 517
Query: 285 ---------TLLKFALCYGFQNLQNIVRKVK----MRKCDYQFVEVMACPSGCLNGGGQI 331
L+ + +G N + ++ +K KC F+E MACPSGCL GGGQ
Sbjct: 518 VPDWDWLKGVTLRVGIVHGSANAKRVMEDIKAGGPFSKC--HFIEFMACPSGCLGGGGQ- 574
Query: 332 KPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWL 373
P P + K + IY + + +NP+V LY E+L
Sbjct: 575 -PIPTDATIRA-KRSQAIYQIDSDFSIRKSHENPVVLQLYREFL 616
>gi|325662495|ref|ZP_08151098.1| hypothetical protein HMPREF0490_01838 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471191|gb|EGC74416.1| hypothetical protein HMPREF0490_01838 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 584
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 115/383 (30%), Positives = 196/383 (51%), Gaps = 35/383 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K K ++ ++P RA+ E G+ + K+ L+ +G +FDT+ S DLT++E
Sbjct: 221 DKKKVTVVQIAPAVRAAWGEALGMKREEATVGKIVDALRKIGFDYVFDTAFSADLTIMEE 280
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
EF+ R + + D PM +S CPGWI + + Q +++P +SS KSPQQ G
Sbjct: 281 GAEFLERLQNGELKDR-------PMFTSCCPGWIRFIKSQY-PHLVPQLSSAKSPQQMFG 332
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A +K + + +G P+ I V++MPC KK E E F E Y +VD
Sbjct: 333 AVMKTYFAKSIGVDPENICTVSIMPCLAKKGERNMELFY-------EEYAGH-----DVD 380
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
VLTT E++ +I+ + L ++P D ++ + G ++ G++GG E R A
Sbjct: 381 IVLTTRELVRMIRSAHIAPSTLVDAPCDTLMQDGSGAGVIF---GATGGVMEAALRSAYF 437
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVE---GKTLLKFALCYGFQNLQNIVRKVKMRKC 310
+ GK + F +R+++ A+ E G T+++ A+ G N + ++ ++
Sbjct: 438 LVTGKNPDAD-AFSVVRSNNLNHGAVCAEIPIGDTVVRAAVVSGLGNARQLIEMIERGDV 496
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL-IKTLETIYL--ENVMLADPFKNPLVRS 367
Y FVEVMACP GC+ GGGQ P +EL ++ + +Y +N + +N V
Sbjct: 497 HYDFVEVMACPGGCVGGGGQ----PIHDGQELALERGKNLYFLDKNANIRFSHENKDVLK 552
Query: 368 LYDEWLEQPGSEKAKKHVHTEYH 390
LY++++ +P S KA +HT+++
Sbjct: 553 LYEDFMGKPLSHKAHLLLHTDHN 575
>gi|260655145|ref|ZP_05860633.1| periplasmic [Fe] hydrogenase, large subunit [Jonquetella anthropi
E3_33 E1]
gi|424844979|ref|ZP_18269590.1| hydrogenase, Fe-only [Jonquetella anthropi DSM 22815]
gi|260630067|gb|EEX48261.1| periplasmic [Fe] hydrogenase, large subunit [Jonquetella anthropi
E3_33 E1]
gi|363986417|gb|EHM13247.1| hydrogenase, Fe-only [Jonquetella anthropi DSM 22815]
Length = 577
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 119/377 (31%), Positives = 181/377 (48%), Gaps = 36/377 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ ++P R + E FG+ P + +L + L+ +G +FDT+ S DLT++E +E
Sbjct: 221 KIVLVQIAPAIRTAWCEEFGMKPEEATVNRLASALRIIGFDYVFDTNFSADLTIMEESSE 280
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ R + + PM +S CP W+ + + YI P +S+ KSPQQ GA
Sbjct: 281 FVERLTHADQF-------KFPMFTSCCPAWVRFVKANWPKYI-PQLSTAKSPQQMFGAIA 332
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K Q LG P I+ V+VMPC KK E A Q+ VD +
Sbjct: 333 KSWYPQLLGVDPKRIFSVSVMPCLAKKAECALPTMNSAGAGQD------------VDLAI 380
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
T E+ LI+ ++ LE+ LD L G ++GV +GG E R A +
Sbjct: 381 TNREITRLIRAHQIDPTDLEDEQLDMPLGIGSGAGAIFGV---TGGVMEAALRSAHYFVT 437
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
GK FK +R ++E E+ G T LK A+ G N ++ +++ + Y FV
Sbjct: 438 GKNASPET-FKAVRGQQGWKEAEFEI-GGTKLKVAVVNGLSNANQLITELEKGRVHYDFV 495
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK----NPLVRSLYDE 371
EVMACP GC+ GGGQ P + KE+ + L N+ P++ NP + Y
Sbjct: 496 EVMACPGGCVGGGGQ----PIHAQKEMAPDRAPV-LYNIDKKLPWRYSHANPSIIECYKS 550
Query: 372 WLEQPGSEKAKKHVHTE 388
+L +P SE+A +HT+
Sbjct: 551 YLGKPLSERAHHLLHTD 567
>gi|269791768|ref|YP_003316672.1| hydrogenase, Fe-only [Thermanaerovibrio acidaminovorans DSM 6589]
gi|269099403|gb|ACZ18390.1| hydrogenase, Fe-only [Thermanaerovibrio acidaminovorans DSM 6589]
Length = 585
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 193/379 (50%), Gaps = 33/379 (8%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ +P RA+L E FG+ P V K+ + L+ +G +FDT + DLT++E +E
Sbjct: 227 KVVVVQTAPAVRAALGEEFGLEPGTLVTGKMVSALRQMGFDYVFDTDFAADLTIMEEASE 286
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ R + + D +P+L+S CP W+ + E Q +L S+ KSPQQ GA
Sbjct: 287 FLDRLNRYLKGD---KAVRMPILTSCCPAWVKFFEHQF-PELLDVPSTAKSPQQMFGAVA 342
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K+ +KLG +++ V+VMPC KK EA+R +F + P+VD +
Sbjct: 343 KNFFAKKLGIPREKMVVVSVMPCLAKKYEASRPEFAVDGN-------------PDVDISI 389
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
+T E+ LI+ ++F +L + D+ L G ++ G++GG E R A +
Sbjct: 390 STRELAHLIKRCNIDFLSLPDEDFDRPLGESTGAGVIF---GTTGGVIEAAVRTAVEWAT 446
Query: 257 GKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD-YQF 314
GK +E ++F +R RE + V G L + +G N + ++ V+ K + +
Sbjct: 447 GKPLE-KVDFTELRGMQGCREAWVNV-GDLKLHIGIAHGLGNARRLLEAVRDGKGEMFHA 504
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFK----NPLVRSLYD 370
+E+MACP GC+ GGGQ P + + + K E IY E+ P + NP + LY+
Sbjct: 505 IEIMACPGGCVGGGGQ--PYHHGNFEIVKKRAEAIYRED--QGKPIRKSHENPEIVKLYE 560
Query: 371 EWLEQPGSEKAKKHVHTEY 389
E+L +P E A +HT Y
Sbjct: 561 EFLGKPLGETAHHLLHTHY 579
>gi|291549870|emb|CBL26132.1| hydrogenases, Fe-only [Ruminococcus torques L2-14]
Length = 578
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 111/350 (31%), Positives = 182/350 (52%), Gaps = 34/350 (9%)
Query: 46 KLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPG 105
K+ LK +GV +FDTS S DLT++E NEF+ R+ + + PM +S CPG
Sbjct: 250 KIMDALKKIGVDYVFDTSFSADLTIMEEGNEFLQRFTKGELK-------LRPMFTSCCPG 302
Query: 106 WICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLE 165
WI + + Q +++P +S+ KSPQQ GA +K + Q +G P++IY V+VMPC KK E
Sbjct: 303 WIRFIKSQY-PHLVPQLSTAKSPQQMFGAIMKTYFAQSIGVAPEDIYTVSVMPCVAKKGE 361
Query: 166 AAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLT 225
E F + ++D+VLTT E+ +I+ ++ + L++ D ++
Sbjct: 362 RNMELFYGEYAGH------------DIDTVLTTRELTRMIRAAHIDPKILKDRECDPLMK 409
Query: 226 NVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVE--- 282
G ++ G++GG E R A + G+ + FK +R+ F +E E
Sbjct: 410 EWSGAGVIF---GATGGVMEAALRSAHYLVTGRNPDPD-AFKIVRSPSFETDVVEAEVQI 465
Query: 283 GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL 342
G ++ A+ G N++ ++ ++ + Y FVEVMACP GC+ GGGQ P +EL
Sbjct: 466 GDATIRAAVVSGLGNVRKLLEAIEHGEVHYDFVEVMACPGGCVGGGGQ----PIHDGEEL 521
Query: 343 IKTL-ETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
T +Y +N + +N V LY+++LE+P S K+ +HT++
Sbjct: 522 AHTRGANLYFLDKNAKIRFSHENQDVMKLYNDFLEKPLSHKSHMLLHTDH 571
>gi|340759404|ref|ZP_08695975.1| hydrogenase [Fusobacterium varium ATCC 27725]
gi|251836690|gb|EES65225.1| hydrogenase [Fusobacterium varium ATCC 27725]
Length = 644
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 198/382 (51%), Gaps = 28/382 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
+ V++ ++P R ++ E FG + V KKL LK LGV +FDT+ + D+T++E +E
Sbjct: 286 RIVVVQIAPAVRVAIGEAFGFEAGTNVEKKLVGALKKLGVNYVFDTTWAADITVMEEASE 345
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F R ++ + DD LP+L+S CP W+ + E+ +L SSVKSP Q
Sbjct: 346 FQERLERYYKGDD---TVRLPILTSCCPAWVKFIEQNYPD-MLDVPSSVKSPMQIFSTIA 401
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K ++ G+ + + V +MPC KK EA+R +F S+ + Y + D V+
Sbjct: 402 KDIWAKEKGYVRERVSVVGIMPCLAKKYEASRPEF-----SRGDNY--------DTDYVI 448
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
+T E++ + + ++ + +EE D L G ++G +GG E R + +
Sbjct: 449 STRELIKIFKESGIDLKDVEEKDFDNPLGEYSGAGIIFG---RTGGVIEAATRSTIEMIT 505
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G ++ +EFK +R + FR L + G L+ + +G + ++ K++ + + +
Sbjct: 506 GTHLD-EIEFKELRGWEGFRTAELTI-GHIELRIGIAHGLEEAAKMLDKIRAGEEFFHAI 563
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWL 373
E+MAC GC+ GGGQ PK + + L K E + + + +NP V+++YD++L
Sbjct: 564 EIMACKGGCIGGGGQ--PKAVKKQETLEKRAEGLNTIDRGMKIRRSHENPYVKAIYDKYL 621
Query: 374 EQPGSEKAKKHVHTEYHPVVKS 395
+ P S KA + +HT+Y P +K+
Sbjct: 622 DYPLSHKAHELLHTKYFPKIKN 643
>gi|206891155|ref|YP_002249518.1| hydrogenase-1 [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206743093|gb|ACI22150.1| hydrogenase-1 [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 589
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 115/379 (30%), Positives = 206/379 (54%), Gaps = 28/379 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ +P + S+ E FG+ + K+ + LK +G ++FDT+ S DLT++E E
Sbjct: 230 KHVVVQTAPATHVSIGEAFGLPVGTDITGKMVSALKRIGFDAVFDTNWSADLTIMEEGYE 289
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
I R K + LP +S PGWI + E + ++P+ISS KSPQQ +G
Sbjct: 290 LIHRIK---------NGGVLPQFTSCSPGWIKFLE-EFYPDLIPHISSCKSPQQMLGPIA 339
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + QK G P++I+ V++MPC KK EAAR ++++ + +++ + +VD VL
Sbjct: 340 KTYYAQKKGISPEDIFVVSIMPCTAKKYEAARP----EMNAAAKFWKNPNIS-RDVDVVL 394
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
T+ E++ +I+ ++F L +S D ++ ++ G++GG E R A + +
Sbjct: 395 TSRELIRMIREAGIDFAKLPDSAYDPVMGEGTGAAQIF---GATGGVMEAALRTAYEVVT 451
Query: 257 GKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-DYQF 314
GK ++ L+F+ +R D +E ++ + G T +K + + + ++ KV+ + DY F
Sbjct: 452 GKTLQ-KLDFEDVRGMKDIKEASVSMNGLT-VKVLVAHSLGAARQLIEKVRGGELKDYHF 509
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEW 372
+EVM CP GC+ GGGQ P + +E+ + IY + + L +NP ++++Y E+
Sbjct: 510 IEVMTCPGGCIGGGGQPIPTTVEK-REM--RIAGIYERDRKMPLRKSHENPEIQAIYKEF 566
Query: 373 LEQPGSEKAKKHVHTEYHP 391
L++P + + +HT Y P
Sbjct: 567 LKEPLGHLSHELLHTHYTP 585
>gi|410729200|ref|ZP_11367281.1| hydrogenase, Fe-only [Clostridium sp. Maddingley MBC34-26]
gi|410596042|gb|EKQ50729.1| hydrogenase, Fe-only [Clostridium sp. Maddingley MBC34-26]
Length = 586
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 122/388 (31%), Positives = 194/388 (50%), Gaps = 38/388 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K ++ ++P RA+ E FG++ + ++L L+ +G IFDT+ S DLT++E +E
Sbjct: 221 KITVVQIAPAVRAAWGESFGLTREEATVERLVAALRKIGFNYIFDTNFSADLTIMEEGSE 280
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ E + + N+ PM +S CPGW+ + + Q ++ +S+ KSPQQ GA
Sbjct: 281 FL-------EKINNKENNVFPMFTSCCPGWVRFLKSQYPD-MVNQLSTAKSPQQMFGAVA 332
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + + L P I+ V++MPC KK E S+ D G +VD VL
Sbjct: 333 KTYYAKILNVNPSNIFCVSIMPCIAKKHE-----------SEISVMNDAGAG-QDVDLVL 380
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E+ +I+ + + + L+E D L G ++G ++GG E R A
Sbjct: 381 TTREIDRMIRAEHIIPQNLKEEAFDMPLGVGSGAGVIFG---ATGGVMEAALRSAYFLTT 437
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
G + FK IR + +RE E++G ++ K A+ G N + ++++++ K Y FV
Sbjct: 438 GTNPDPD-AFKEIRGMNGWREATFEIKGISI-KVAIVSGLGNTRRLIKEIRKGKVSYDFV 495
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE---NVMLADPFKNPLVRSLYDEW 372
EVMACP GC GGGQ P + EL + E L +NP V LY+++
Sbjct: 496 EVMACPGGCSGGGGQ----PIKDGAELAEVRAYNLYELDKKSTLRFSHENPSVLKLYEDF 551
Query: 373 LEQPGSEKAKKHVHTE----YHPVVKSI 396
+E+P S KA K +HT+ Y P+ I
Sbjct: 552 MERPLSHKAHKLLHTDHMEWYMPISPRI 579
>gi|336436392|ref|ZP_08616104.1| hypothetical protein HMPREF0988_01689 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336007257|gb|EGN37282.1| hypothetical protein HMPREF0988_01689 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 580
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 115/383 (30%), Positives = 193/383 (50%), Gaps = 35/383 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+ K ++ ++P R + E G+S + K+T L+ LG +FDT+ S DLT++E
Sbjct: 218 DPNKITVVQVAPAVRTAWGEALGLSREEATMGKITDSLRRLGFDYVFDTTFSADLTIMEE 277
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EF+ R + D PM +S CPGW+ + + Q +++ +S+ KSPQQ G
Sbjct: 278 GSEFVKRLTSGELKDR-------PMFTSCCPGWVRFIKSQY-PHLVKQLSTAKSPQQMFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
A +K + + +G P+ I V+VMPC KK E E F E Y +VD
Sbjct: 330 AAMKTYFAKSIGVDPENICTVSVMPCTAKKGECNMELFY-------EEYAGH-----DVD 377
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
VLTT E+ +I+ + L++ D+++ + G ++G ++GG E R A
Sbjct: 378 LVLTTRELTRMIRSAHIAPSTLKDEVCDELMQDGSGAGVIFG---ATGGVMEAALRSAYF 434
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVE---GKTLLKFALCYGFQNLQNIVRKVKMRKC 310
+ GK + FK +R + E + E G ++ A+ G N + ++ +++ +
Sbjct: 435 LVTGKNPDAD-AFKNVRRTREDEFTMTAEIPIGDITVRTAVVSGLANTRRLIERIEREEV 493
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL-ETIYLENVM--LADPFKNPLVRS 367
+ FVEVMACP GC+ GGGQ P +EL T + +Y + L +NP ++
Sbjct: 494 HFDFVEVMACPGGCVGGGGQ----PIHDSEELALTRSKNLYFLDASNELRFSHENPDIQK 549
Query: 368 LYDEWLEQPGSEKAKKHVHTEYH 390
LYD+++E P S KA +HT+++
Sbjct: 550 LYDDFMEAPLSHKAHMLLHTDHN 572
>gi|160893745|ref|ZP_02074529.1| hypothetical protein CLOL250_01299 [Clostridium sp. L2-50]
gi|156864730|gb|EDO58161.1| hydrogenase, Fe-only [Clostridium sp. L2-50]
Length = 561
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 106/360 (29%), Positives = 176/360 (48%), Gaps = 39/360 (10%)
Query: 20 VIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFI 78
V+ ++P R ++ ++FGI + F KL + L+ +G +FDTS DLT++E EF
Sbjct: 223 VVAQIAPAVRVAVGDNFGIPKGENCFGKLVSALRIMGFDMVFDTSFGADLTVMEESKEFA 282
Query: 79 ARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKH 138
AR S+ LP+ +S CPGW+ Y E++ + +S+ +SPQ A IK
Sbjct: 283 ARLA---------SDEKLPLFTSCCPGWVKYCEEKYPEF-ADNLSTCRSPQGMFSAVIKD 332
Query: 139 HICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTT 198
+ +K V++MPC KK E R D D +++T D V+TT
Sbjct: 333 YFAEKDKEDGKRTMVVSIMPCTAKKGEILRPDNF--TDGRQDT-----------DYVITT 379
Query: 199 GEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGK 258
EV+ +I+ + F LE D + G ++G ++GG E V R A+
Sbjct: 380 TEVVRMIKQMGLQFTELENESADAPFSVASGAGKIFG---TTGGVTEAVLRRLAEDKSYN 436
Query: 259 VIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEV 317
I + + +R + +E ++++G+ + K A+ +G N ++ +++ + Y FVEV
Sbjct: 437 TIR-EISYTGVRGFEGTKEATIDLDGREV-KIAVVHGLANAGRLLDRIRSGEASYDFVEV 494
Query: 318 MACPSGCLNGGGQIKPKPGQSPKELIKTLETIY----LENVMLADPFKNPLVRSLYDEWL 373
MAC GC+ GGGQ G P+ +E +Y NV ++ +NP +R LYD +L
Sbjct: 495 MACRRGCIMGGGQ---PSGAGPRTRRSRMEGMYNADASSNVRFSE--ENPAIRQLYDHFL 549
>gi|333996965|ref|YP_004529577.1| iron hydrogenase 1 [Treponema primitia ZAS-2]
gi|333738540|gb|AEF84030.1| iron hydrogenase 1 ([Fe] hydrogenase) (Fe-onlyhydrogenase) (CpI)
[Treponema primitia ZAS-2]
gi|342308701|gb|AEL20823.1| HndA1 [Treponema primitia ZAS-2]
Length = 581
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 191/389 (49%), Gaps = 58/389 (14%)
Query: 21 IISLSPQSRASLAEHFGISPLQVF-KKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIA 79
++ ++P +R +LAE FG+ P + KK+ L+ LG ++FDT+ S DLT++E E +
Sbjct: 225 VVQIAPATRVALAEEFGLEPGTIATKKMYAALRRLGFNTVFDTNFSADLTIMEEGTELVH 284
Query: 80 RYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHH 139
R + + +P+++S CP W+ Y EK + ++P S+ KSPQQ +GA IK +
Sbjct: 285 RLTKGGD---------IPLITSCCPAWVDYMEKYY-TDMIPNFSTAKSPQQMMGAMIKAY 334
Query: 140 ICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTG 199
+K G PD++ V+VMPC KK E +R D D + + + +VD +TT
Sbjct: 335 WAEKAGVNPDKVCSVSVMPCTAKKWEISRND-----DMKSAGHGN------DVDIAITTR 383
Query: 200 EVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKV 259
E+ +I+ + L + D L G ++ G++GG E R +A L K
Sbjct: 384 ELARMIKQAGIKILELPDEEADSPLGPYTGAGTIF---GATGGVMEAAVR-SAYFLVTKK 439
Query: 260 IEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-----DYQ 313
G++ F R + +E ++++G T +K A+ + N+ ++ K++ K +Q
Sbjct: 440 ELGNVNFLPARGLEGVKEAEVDLDG-TKIKIAVAHQMGNIAAVLDKIRAAKAAGQPSPWQ 498
Query: 314 FVEVMAC----------PSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFK 361
FVEVMAC P GC++ +++ K +Y E L +
Sbjct: 499 FVEVMACRGGCVGGGGQPYGCVD---EVRAKRAAG----------LYQDDEQSQLRCSHQ 545
Query: 362 NPLVRSLYDEWLEQPGSEKAKKHVHTEYH 390
NP + +Y E+L +P KA + +HT Y
Sbjct: 546 NPNITKVYKEFLGEPNGHKAHELLHTTYQ 574
>gi|239627947|ref|ZP_04670978.1| hydrogenase [Clostridiales bacterium 1_7_47_FAA]
gi|239518093|gb|EEQ57959.1| hydrogenase [Clostridiales bacterium 1_7_47FAA]
Length = 602
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 182/382 (47%), Gaps = 46/382 (12%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ ++P RA+L E FG+ V K+ + L +G +FDT S DLT++E E
Sbjct: 221 KRVVVQVAPAVRAALGEEFGLPVGTPVTGKMASALHEIGFDDVFDTLFSADLTILEEGTE 280
Query: 77 FIARYKQ------SQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQ 130
+ R +Q D N++LPM++S PGWI + E Q L ++SS KSP
Sbjct: 281 LLGRLNAVLKGDGAQGEDGHGVNTALPMITSCSPGWIKHIEHQFPDE-LDHLSSCKSPHT 339
Query: 131 TIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIP 190
+GA +K ++ G P +++ V+VMPC KK E R + ++D Q RD
Sbjct: 340 MMGAVVKTFYAERTGTAPKDMFVVSVMPCTAKKYEIQRPE--MEVDGQ----RD------ 387
Query: 191 EVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRH 250
VD+VLTT E+ +I+ ++F L E D L ++GV G V
Sbjct: 388 -VDAVLTTRELARMIKTAGIDFVNLPEGEFDAPLGLGTGAADIFGVTGG-------VMEA 439
Query: 251 AAKTLFGKVIEGHLEFKTIRNS------DFREVALEVEGKTL----------LKFALCYG 294
A +T++ V L F+ + + + ++ +E +TL + A+ G
Sbjct: 440 ALRTVYEVVTGNELPFEKLHVTPIVGLDQVKTASITIE-ETLPEYGHLKGVTVNVAVTSG 498
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV 354
+ ++++V Y F+EVM CP GC+NGGGQ + ++ K L + E
Sbjct: 499 LEGASMLMKEVAEGTSPYHFIEVMGCPGGCINGGGQPRCSEENYREKRAKALYS-EDERK 557
Query: 355 MLADPFKNPLVRSLYDEWLEQP 376
+L +NP + LY+++L P
Sbjct: 558 VLRKSHENPDLMKLYNDYLGTP 579
>gi|350566056|ref|ZP_08934763.1| ferredoxin hydrogenase [Peptoniphilus indolicus ATCC 29427]
gi|348663157|gb|EGY79763.1| ferredoxin hydrogenase [Peptoniphilus indolicus ATCC 29427]
Length = 592
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 188/374 (50%), Gaps = 45/374 (12%)
Query: 29 RASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARYKQSQES 87
R S E G+ + K+ LK +GV +FDT+ S DLT++E NEF+ R+ ++
Sbjct: 232 RTSWGEEIGLEIKEATVNKIFDALKKIGVDYVFDTAYSADLTIMEEANEFLDRFNNNEL- 290
Query: 88 DDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFR 147
DER PM +S CPGW+ + + Q +++P +S+ KSP Q G+ +K + +K+G +
Sbjct: 291 -DER-----PMFTSCCPGWLRFIKGQF-PHLVPQLSTAKSPMQMFGSVMKTYFAEKIGKK 343
Query: 148 PDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQL 207
P+ IY V VMPC KK E+ E F E Y + D V+TT E++ +++
Sbjct: 344 PENIYSVAVMPCLAKKGESEMELFY-------EEYAGH-----DTDCVITTRELVRMLRA 391
Query: 208 KAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFK 267
+N LE+ DK+ G ++ G++GG E R A T+ G+ F+
Sbjct: 392 AHINSNTLEDIEPDKLFEKSSGAGVIF---GATGGVMEAALRTAYYTIMGENCSPDA-FE 447
Query: 268 TIR----NSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSG 323
+R ++ E + + G L+ A G N + ++ +++ + Y FVEVMACP G
Sbjct: 448 VVRAESQDTGVSEASFNLNG-VELRVAAVNGLGNARKLIEEIERGEKKYDFVEVMACPGG 506
Query: 324 C-------LNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQP 376
C ++ G ++ + G++ L K E Y +N V+SLY+ + ++P
Sbjct: 507 CVGGGGQPIHDGDELAFERGKNLYFLDKKSELRY--------SHENEDVKSLYENYFDKP 558
Query: 377 GSEKAKKHVHTEYH 390
S KA +HT+++
Sbjct: 559 NSHKAHMLLHTDHN 572
>gi|225175926|ref|ZP_03729918.1| hydrogenase, Fe-only [Dethiobacter alkaliphilus AHT 1]
gi|225168514|gb|EEG77316.1| hydrogenase, Fe-only [Dethiobacter alkaliphilus AHT 1]
Length = 574
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 121/399 (30%), Positives = 196/399 (49%), Gaps = 42/399 (10%)
Query: 1 MLEKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKS 58
+ EK +D+ I + K V++ +P + S+AE G+ P + K+ L+ LG
Sbjct: 206 IYEKSVVDDVWQAIADPNKHVVVQAAPAVQVSIAEALGLEPGTPMAGKMAAALRRLGFDR 265
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+F T + DLT++E E + R K +N +LP+++S PGWI + E +
Sbjct: 266 VFTTEFTADLTILEEGTELLGRLK---------NNGALPLITSCSPGWIKFIEHNFPE-L 315
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L +S+ KSPQQ GA K + +K G P +IY V++MPC KK EAAR +
Sbjct: 316 LENLSTCKSPQQMFGALAKTYYAEKNGIDPSKIYSVSLMPCTAKKYEAARPEM------N 369
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVA- 237
YRD VD+V+TT E+ +I +++ L + D G L G A
Sbjct: 370 SSGYRD-------VDAVITTRELARMIHEASLDINKLADEQFDAPF------GMLTGAAT 416
Query: 238 --GSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYG 294
G++GG AE R + + G+ + +E++ +R D +E ++ + G T +K A+ G
Sbjct: 417 IFGTTGGVAEAALRTLYELVNGQEMP-TMEYEPVRGLDGIKESSVNL-GGTDVKIAVTSG 474
Query: 295 FQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENV 354
N + ++ +VK + +Y F+E+MA G GGG K G + + +IY +
Sbjct: 475 LANAREVLNRVKNGEAEYHFIEIMA-CPGGCIGGGGQPIKNGSDNR--VARAASIYKVDA 531
Query: 355 M--LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
+ +N V+ LY E+L +P S KA +HT Y P
Sbjct: 532 ANRVRKSHENSAVKQLYKEYLGEPNSHKAHDLLHTHYTP 570
>gi|331092597|ref|ZP_08341416.1| hypothetical protein HMPREF9477_02059 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330400608|gb|EGG80222.1| hypothetical protein HMPREF9477_02059 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 580
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 114/383 (29%), Positives = 191/383 (49%), Gaps = 35/383 (9%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K K ++ ++P R + E G+S + K+ L+ +G +FDT+ S DLT++E
Sbjct: 218 DKDKITVVQVAPAVRTAWGESLGLSREEATIGKIVDSLRQMGFDYVFDTTFSADLTIMEE 277
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
NEF+ R+ + + PM +S CPGWI + + Q +++P +S+ KSPQQ G
Sbjct: 278 GNEFLERFLSGELK-------TRPMFTSCCPGWIRFIKSQY-PHLVPQLSTAKSPQQMFG 329
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+K + + +G P+ I V++MPC KK E E + E Y +VD
Sbjct: 330 TVMKTYFAKSIGVNPENICTVSIMPCVAKKGERNMELYY-------EEYAGH-----DVD 377
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
VLTT E+ +I+ + L + D+++ + G ++ G++GG E R A
Sbjct: 378 IVLTTRELTRMIRSSHIKPSTLSDVECDRLMQDGSGAGVIF---GATGGVMEAALRSAYY 434
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVE---GKTLLKFALCYGFQNLQNIVRKVKMRKC 310
L GK + F +R+ F + + E G ++ A+ G N + ++ ++
Sbjct: 435 LLMGKNPDAD-AFSVVRSEKFNQGVISAEFSIGDAKIQTAVVSGLGNTRKLIDAIEHGDV 493
Query: 311 DYQFVEVMACPSGCLNGGGQIKPKPGQSPKEL--IKTLETIYLE-NVMLADPFKNPLVRS 367
Y FVEVMACP GC+ GGGQ P +EL I+ YL+ N + +N V
Sbjct: 494 HYDFVEVMACPGGCVGGGGQ----PIHDGEELAHIRGQNLYYLDKNAKIRFSHENQDVLK 549
Query: 368 LYDEWLEQPGSEKAKKHVHTEYH 390
LY++++E+P S KA +HT+++
Sbjct: 550 LYEDFMEKPLSHKAHMLLHTDHN 572
>gi|374994233|ref|YP_004969732.1| hydrogenase, Fe-only [Desulfosporosinus orientis DSM 765]
gi|357212599|gb|AET67217.1| hydrogenase, Fe-only [Desulfosporosinus orientis DSM 765]
Length = 580
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 112/394 (28%), Positives = 194/394 (49%), Gaps = 34/394 (8%)
Query: 1 MLEKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVFK-KLTTFLKSLGVKS 58
+ E +D+ +N K V++ +P R +L E FG+ P + K+ L+ LG
Sbjct: 210 LTELDQVDKVWKALNDPDKFVVVQTAPAVRVALGEEFGLEPGTIVTGKMVAALRRLGFDR 269
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
+FDT + DLT++E E + R + LP+L+S CP W+ + E Q +
Sbjct: 270 VFDTDFAADLTIMEEATELVHRIQH---------GGRLPLLTSCCPAWVKFFEHQFPD-L 319
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
L S+ KSP Q +G K + + LG P I V+VMPC KK EA R +
Sbjct: 320 LDIPSTCKSPHQMLGVLTKSYYAKTLGIDPKSITVVSVMPCVAKKYEADRPEL------- 372
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+G + +VD V+TT E+ +++ +++F+ L++ D L ++G
Sbjct: 373 -----SQGTDTADVDIVITTRELARMVREASIHFDHLKDQEFDHPLGESTGAAVIFG--- 424
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
++GG E R A + L G +E +EF+ +R + +E + + G+ + A+ +G N
Sbjct: 425 ATGGVLEAALRTAYEVLTGDTLE-KVEFEALRGMEGIKEAVIPIGGRDY-RIAVIHGLGN 482
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM-- 355
+ ++ K++ + +Y +E+MACP GC+ GGGQ P + + L IY E+
Sbjct: 483 ARTVLEKIQAGESNYDVIEIMACPGGCIGGGGQ--PYHHGNMEILKARAGAIYREDRGKP 540
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
L +N + LY ++L +P ++A + +HT Y
Sbjct: 541 LRKSHENLAIIGLYKDFLGEPFGKRAHQLLHTSY 574
>gi|262381802|ref|ZP_06074940.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
gi|262296979|gb|EEY84909.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
Length = 596
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 115/376 (30%), Positives = 184/376 (48%), Gaps = 28/376 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI +P R +L FG P V K+ + L+ LG +FDT + DLT++E E
Sbjct: 228 KIVIAQTAPAVRTALGRDFGYEPGTLVTGKMVSALRQLGFDYVFDTDFAADLTIMEEGTE 287
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R D E +P+++S CPGW+ + E+ + +S+ KSPQQ GA
Sbjct: 288 LLHRLGSYLNGDKE---VKIPLMTSCCPGWVSFVEQHFPE-LRDNLSTAKSPQQMFGAIA 343
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +KLG ++ V++MPC KK EA+R +F + + P+VD +
Sbjct: 344 KSYFAEKLGVDRKDLVVVSIMPCLAKKYEASRPEFSVEGN-------------PDVDYSI 390
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
T E+ LI+ ++F L + D+ L ++ G++GG E R A + L+
Sbjct: 391 YTRELARLIRYANIDFNELPDGEFDRPLGESTGASVIF---GTTGGVIEAACRTAYE-LY 446
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
K ++F+ +R + R ++ G T +K + +G N + ++ +VK Y +
Sbjct: 447 TKKNLDKVDFEELRGLEGIRSATIDFNG-TQVKIGIAHGLGNARKLIEEVKNGTSPYHAI 505
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWL 373
EVMACP GC+ GGGQ P + L + +Y E N L +NP ++ LY E+L
Sbjct: 506 EVMACPGGCIGGGGQ--PFHRGRMEVLRRRAAALYREDANKPLRKSHENPYIQQLYSEYL 563
Query: 374 EQPGSEKAKKHVHTEY 389
+P KA K +HT Y
Sbjct: 564 GEPCGPKAHKLLHTHY 579
>gi|157363815|ref|YP_001470582.1| hydrogenase large subunit [Thermotoga lettingae TMO]
gi|157314419|gb|ABV33518.1| hydrogenase large subunit domain protein [Thermotoga lettingae TMO]
Length = 653
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/393 (27%), Positives = 189/393 (48%), Gaps = 48/393 (12%)
Query: 4 KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDT 62
+ L++ ++ K VI ++P R ++ E + S L + +++ TFL+ G +FD
Sbjct: 205 RNDLEKLYQALSSDKIVIGMVAPAVRVAIQEELSLESDLAMAERIATFLRMSGFNKVFDV 264
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
+ DL E +EF R + ++ LP +S CP W+ Y E+ ++ +
Sbjct: 265 AFGADLVAYEEAHEFYKRLSRQEK---------LPQFTSCCPAWVKYVEQYYPKFV-ENL 314
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
S+VKSPQQ +G+ IK +K+G P +I+ V+ MPC KK EA RE+
Sbjct: 315 STVKSPQQALGSLIKKIYAKKMGLNPQDIFLVSFMPCTAKKFEAEREEHA---------- 364
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGG 242
G+ VD VLTT E+ +I+ +N + + P D+ G +G G G
Sbjct: 365 ---GV----VDLVLTTKELSQMIKASGINIKQISPEPFDRPFGISSQGGLSFGKTGGVFG 417
Query: 243 YAETVFRH---AAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQ 299
+V R ++ + ++EG ++ L+ +GK+ ++ A+ +G N +
Sbjct: 418 SVVSVLRDEIGISREEYDNLLEG---------VKIAKITLK-DGKS-IRAAVIFGLANAR 466
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL-ETIYLENVMLAD 358
I++K+ + + VEVMAC GC+ GGGQ P + ++ L ET+ ++ ++
Sbjct: 467 KIMKKISSGEFNVDIVEVMACNYGCIGGGGQPYPNDSRMRQKRAHILRETVGIKTLL--S 524
Query: 359 PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
P +N V+ LY E L E A+ +HT Y P
Sbjct: 525 PVENFYVQKLYQEDL---SDEHARHIIHTNYKP 554
>gi|187934487|ref|YP_001886193.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum B str. Eklund
17B]
gi|187722640|gb|ACD23861.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum B str. Eklund
17B]
Length = 646
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 118/381 (30%), Positives = 196/381 (51%), Gaps = 27/381 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI ++P R ++ E FG P + V KK+ L+ LGV +FDT+ DLT++E E
Sbjct: 287 KVVITQMAPAIRVAIGEAFGFEPGENVEKKIAAGLRKLGVDYVFDTTWGADLTIMEEAAE 346
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
R ++ D+ N LP+L+S CP WI + E +L SS KSP Q
Sbjct: 347 LQERLEKYLAGDE---NVKLPILTSCCPSWIKFIENNYAD-MLEVPSSAKSPMQMFATIA 402
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K ++ G + +E+ V +MPC K EA+R +F ++ +VD V+
Sbjct: 403 KEIWAKEKGLQREEVTSVAIMPCVAKIYEASRVEFSVDMNY-------------DVDYVI 449
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
TT E++ + + ++ + +E+ +D ++ G ++ G +GG E R A + +
Sbjct: 450 TTRELIKIFEKSGIDLKEIEDEEIDSVMGEYTGAGIIF---GRTGGVIEAATRTAIENMT 506
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
GK I+ ++EF+ +R D FR LEV G+ L+ + +G + ++ K++ + + +
Sbjct: 507 GKRID-NIEFEGLRGWDGFRICELEV-GELKLRIGVAHGLKEAAKMLDKIRSGEEFFHAI 564
Query: 316 EVMACPSGCLNGGGQ--IKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWL 373
E+MAC GC+ GGGQ I+ Q ++ + L I V L +NP V +LY ++L
Sbjct: 565 EIMACVGGCVGGGGQPKIRKNKQQVLEKRAEGLNDIDRAKV-LRRSNENPEVLALYKKYL 623
Query: 374 EQPGSEKAKKHVHTEYHPVVK 394
+ P S KA + +HT+Y P VK
Sbjct: 624 DHPLSHKAHELLHTKYFPKVK 644
>gi|125972951|ref|YP_001036861.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405]
gi|256005707|ref|ZP_05430663.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 2360]
gi|385779133|ref|YP_005688298.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 1313]
gi|419722662|ref|ZP_14249801.1| hydrogenase, Fe-only [Clostridium thermocellum AD2]
gi|419725254|ref|ZP_14252305.1| hydrogenase, Fe-only [Clostridium thermocellum YS]
gi|125713176|gb|ABN51668.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405]
gi|255990338|gb|EEU00464.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 2360]
gi|316940813|gb|ADU74847.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 1313]
gi|380771340|gb|EIC05209.1| hydrogenase, Fe-only [Clostridium thermocellum YS]
gi|380781322|gb|EIC10981.1| hydrogenase, Fe-only [Clostridium thermocellum AD2]
Length = 566
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 179/380 (47%), Gaps = 46/380 (12%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K V + ++P R +L + G++ + K+ L+ +G IFDTS DLT++E
Sbjct: 221 DKNTRVSVQIAPAVRVALGKELGLNDGENAIGKIVAALRRMGFDDIFDTSTGADLTVLEE 280
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
E + R ++ + + +P+ +S CP W+ Y EK +LP++S+ +SP Q
Sbjct: 281 SAELLRRIREGK--------NDMPLFTSCCPAWVNYCEK-FYPELLPHVSTCRSPMQMFA 331
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+ IK ++ + HV VMPC KK EAAR++F +P VD
Sbjct: 332 SIIK----EEYSTSSKRLVHVAVMPCTAKKFEAARKEFKVN-------------GVPNVD 374
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
VLTT E++ +I+ + F LE +D G ++GV SGG E V R
Sbjct: 375 YVLTTQELVRMIKESGIVFSELEPEAIDMPFGTYTGAGVIFGV---SGGVTEAVLRRVVS 431
Query: 254 TLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQ 313
L + +R + + A + G LK A+ G +N +++ ++K + Y
Sbjct: 432 DKSPTSFR-SLAYTGVRGMNGVKEASVMYGDRKLKVAVVSGLKNAGDLIERIKAGE-HYD 489
Query: 314 FVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVM--LADPFKNPLVRSLYDE 371
VEVMACP GC+NGGGQ P +E K + +Y + + + +NPL+ +LY
Sbjct: 490 LVEVMACPGGCINGGGQ----PFVQSEEREKRGKGLYSADKLCNIKSSEENPLMMTLYKG 545
Query: 372 WLEQPGSEKAKKH--VHTEY 389
L K + H +H +Y
Sbjct: 546 IL------KGRVHELLHVDY 559
>gi|315925133|ref|ZP_07921350.1| ferredoxin hydrogenase [Pseudoramibacter alactolyticus ATCC 23263]
gi|315622032|gb|EFV01996.1| ferredoxin hydrogenase [Pseudoramibacter alactolyticus ATCC 23263]
Length = 580
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 187/395 (47%), Gaps = 36/395 (9%)
Query: 3 EKQSLDEFLSNI-NKGKAVIISLSPQSRASLAEHFGISPLQV--FKKLTTFLKSLGVKSI 59
E+ FL + + V + ++P R + AE G+ PL+ K+ LK +G +
Sbjct: 205 ERDDTGRFLRAVMDPDTTVAVQVAPAVRTAWAESLGL-PLEAAPVGKIFDALKKMGADYV 263
Query: 60 FDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYIL 119
FDT+ S DLT++E NE +AR+ + ER PM +S CPGW+ + + + ++
Sbjct: 264 FDTAFSADLTIMEEANELVARFAAGDLA--ER-----PMFTSCCPGWVRFLKSEY-PHLE 315
Query: 120 PYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQE 179
+S+ KSP Q G+ +K + P+ ++ V VMPC KK EA + + E
Sbjct: 316 SRLSTAKSPMQMFGSVMKTAFAEDQNLDPNRLFSVAVMPCLAKKSEAEMPLYAGEYAGHE 375
Query: 180 ETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGS 239
D VLTT E LI+ +N LE P D + +V G ++G +
Sbjct: 376 ------------TDCVLTTREFARLIRACHINMATLEAVPADTLYQSVSGAGIIFG---A 420
Query: 240 SGGYAETVFRHAAKTLFGKVIEGHLEFKTIR----NSDFREVALEVEGKTLLKFALCYGF 295
+GG E R A TL G+ G F +R ++ E + G T L+ A G
Sbjct: 421 TGGVMEAALRTAYHTLTGRNCPGD-HFADVRATGQDTGVTEATFAI-GDTSLRVAAVSGL 478
Query: 296 QNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE-NV 354
N + ++ ++ + Y FVEVMACP GC+ GGGQ P + + +L+
Sbjct: 479 ANTRRLIEALEAGRARYDFVEVMACPGGCVGGGGQ--PIHDGEERAFARGKNLYFLDRGA 536
Query: 355 MLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389
+ +NP +R+LY + +PGS A++ +HT++
Sbjct: 537 PIRHCHENPDIRALYRDHYGEPGSPAARRLLHTDH 571
>gi|301310274|ref|ZP_07216213.1| putative [Fe] hydrogenase, large subunit HymC [Bacteroides sp.
20_3]
gi|423336515|ref|ZP_17314262.1| hydrogenase, Fe-only [Parabacteroides distasonis CL09T03C24]
gi|300831848|gb|EFK62479.1| putative [Fe] hydrogenase, large subunit HymC [Bacteroides sp.
20_3]
gi|409240990|gb|EKN33764.1| hydrogenase, Fe-only [Parabacteroides distasonis CL09T03C24]
Length = 596
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 115/376 (30%), Positives = 184/376 (48%), Gaps = 28/376 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI +P R +L FG P V K+ + L+ LG +FDT + DLT++E E
Sbjct: 228 KIVIAQTAPAVRTALGRDFGYEPGTLVTGKMVSALRQLGFDYVFDTDFAADLTIMEEGTE 287
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R D E +P+++S CPGW+ + E+ + +S+ KSPQQ GA
Sbjct: 288 LLHRLGSYLNGDKE---VKIPLMTSCCPGWVSFVEQHFPE-LRDNLSTAKSPQQMFGAIA 343
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +KLG ++ V++MPC KK EA+R +F + + P+VD +
Sbjct: 344 KSYFAEKLGVDRKDLVVVSIMPCLAKKYEASRPEFSVEGN-------------PDVDYSI 390
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
T E+ LI+ ++F L + D+ L ++ G++GG E R A + L+
Sbjct: 391 YTRELARLIRYANIDFNELPDGEFDRPLGESTGASVIF---GTTGGVIEAACRTAYE-LY 446
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
K ++F+ +R + R ++ G T +K + +G N + ++ +VK Y +
Sbjct: 447 TKKNLDKVDFEELRGLEGIRSATIDFNG-TPVKIGIAHGLGNARKLIEEVKNGTSPYHAI 505
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWL 373
EVMACP GC+ GGGQ P + L + +Y E N L +NP ++ LY E+L
Sbjct: 506 EVMACPGGCIGGGGQ--PFHRGRMEVLRRRAAALYREDANKPLRKSHENPYIQQLYSEYL 563
Query: 374 EQPGSEKAKKHVHTEY 389
+P KA K +HT Y
Sbjct: 564 GEPCGPKAHKLLHTHY 579
>gi|222100041|ref|YP_002534609.1| Fe-hydrogenase alpha subunit [Thermotoga neapolitana DSM 4359]
gi|221572431|gb|ACM23243.1| Fe-hydrogenase alpha subunit [Thermotoga neapolitana DSM 4359]
Length = 645
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)
Query: 4 KQSLDEFLSNINKGKAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDT 62
+ +D + + K VI ++P RA++ E FGI + + +KL +FLK++G +FD
Sbjct: 204 RNDIDRLIEALESDKMVIGMIAPAVRAAIQEEFGIDEDVAMAEKLVSFLKTIGFDRVFDV 263
Query: 63 SCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYI 122
S DL E +EF R K ++ LP +S CP W+ YAE Y L +
Sbjct: 264 SFGADLVAYEEAHEFYERLKNGEK---------LPQFTSCCPAWVKYAEHNYPHY-LSNL 313
Query: 123 SSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETY 182
SSVKSPQQ +G IK +KLG ++I+ V+ MPC KK EA R++
Sbjct: 314 SSVKSPQQALGTVIKKIYSKKLGVPEEKIFLVSFMPCTAKKFEAERQEH----------- 362
Query: 183 RDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSG- 241
G+ VD V TT E+ LI++ ++ +E P D+ YGV+ +G
Sbjct: 363 --RGI----VDLVFTTRELSQLIKMSRIDIGKVEPQPFDRP----------YGVSSQAGL 406
Query: 242 --GYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVALEVEGKTLLKFALCYGFQNLQ 299
G A VF L ++ ++ + + R + ++ T + A+ YG
Sbjct: 407 GFGKAGGVFSCVLSVLNEEIGIEKVDIQ-VPEEGVRLAEVTLKDGTSFRGAVIYGLGK-- 463
Query: 300 NIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTL-ETIYLENVMLAD 358
VR++ + D VEVMAC GC+ GGGQ P + + K L +T+ +++++
Sbjct: 464 --VRRILNERNDLSIVEVMACSYGCVGGGGQPYPNDSRIRQHRAKVLRDTMGIKSLL--T 519
Query: 359 PFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391
P +N + LY+E L+ + + +HT Y P
Sbjct: 520 PVENLFLMKLYEEDLKD--THLRHEILHTTYRP 550
>gi|312878995|ref|ZP_07738795.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Aminomonas paucivorans DSM 12260]
gi|310782286|gb|EFQ22684.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
[Aminomonas paucivorans DSM 12260]
Length = 585
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 190/377 (50%), Gaps = 29/377 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ +P RA+L E FG+ P V K+ L++LG +FDT + DLT++E +E
Sbjct: 227 KVVVVQTAPAVRAALGEEFGLEPGTLVTGKMAAALRALGFDHVFDTDFAADLTIMEEASE 286
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
F+ R + D + LP+L+S CP W+ + E Q +L S+ KSPQQ GA
Sbjct: 287 FLDRLTRHLNGD---KDVRLPILTSCCPAWVKFFEHQFPD-MLDVPSTAKSPQQMFGAIA 342
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + QKLG +++ V++MPC KK E +R +F + P+VD +
Sbjct: 343 KSYFAQKLGIPREKMVVVSIMPCLAKKYECSRPEFAENGN-------------PDVDISI 389
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
+T E+ LI+ ++F AL + DK L ++ G++GG E R A +
Sbjct: 390 STRELAHLIKRANIDFLALPDEDFDKPLGESTGAAVIF---GTTGGVIEAAVRSAVEWAT 446
Query: 257 GKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCD-YQF 314
+ ++ ++F +R RE L V G L + +G N + ++ V+ + + +
Sbjct: 447 KQPLDS-VDFTALRGFQGCREAKLPV-GDLTLHIGIAHGLGNARRLLEAVRKGEVEPFHA 504
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEW 372
+E+MACP GC+ GGGQ P + + + K E IY E N + +NP + LY+E+
Sbjct: 505 IEIMACPGGCVGGGGQ--PYHHGNLEIVKKRAEAIYREDRNKPIRKSHENPDIIRLYEEF 562
Query: 373 LEQPGSEKAKKHVHTEY 389
L +P E + +HT Y
Sbjct: 563 LGKPLGEVSHHLLHTHY 579
>gi|308049766|ref|YP_003913332.1| hydrogenase, Fe-only [Ferrimonas balearica DSM 9799]
gi|307631956|gb|ADN76258.1| hydrogenase, Fe-only [Ferrimonas balearica DSM 9799]
Length = 410
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/332 (31%), Positives = 170/332 (51%), Gaps = 17/332 (5%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQ-VFKKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K V+ ++P R ++ E FG+ + V KKL + G K IFD + + DLT++E
Sbjct: 83 DKNTTVVGIIAPAVRVAVGEEFGLPRGELVTKKLYGAMNQAGFK-IFDCNFAADLTIMEE 141
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EFI R + + D + +LP +S CP W+ Y E + S +LP +S+ KSPQQ G
Sbjct: 142 GSEFIHRLHANVQGD--KDAGALPQFTSCCPAWVRYLETKYPS-LLPNLSTAKSPQQMAG 198
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
K + + P++I+ V+VMPC KK+EA+R +F +E R +VD
Sbjct: 199 TVAKTYGAKVYNMAPEQIFTVSVMPCTAKKVEASRPEFNDAWSYHKEHGR-HADSYQDVD 257
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+VLTT E+ L++L ++ +E D + G ++ G++GG E R A K
Sbjct: 258 AVLTTREMSQLLKLLNIDLATADEFDGDSLFAEYTGAGTIF---GATGGVMEAAVRTAHK 314
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTL-----LKFALCYGF-QNLQNIVRKVK 306
L G+ + LE + +R ++ + + K L +K A+ + N++ ++ +
Sbjct: 315 VLTGEEM-ARLELEPVRGLQGVKDAEITLFDKHLGQNVTVKVAVVHDMGNNVEPLLNDIM 373
Query: 307 MRKCDYQFVEVMACPSGCLNGGGQIKPKPGQS 338
DY F+EVM C GC+NGGGQ + G S
Sbjct: 374 AGTSDYHFIEVMNCAGGCVNGGGQPIDRSGSS 405
>gi|182417654|ref|ZP_02948973.1| uptake hydrogenase [Clostridium butyricum 5521]
gi|237668485|ref|ZP_04528469.1| hydrogen dehydrogenase [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182378378|gb|EDT75909.1| uptake hydrogenase [Clostridium butyricum 5521]
gi|237656833|gb|EEP54389.1| hydrogen dehydrogenase [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 593
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 182/390 (46%), Gaps = 53/390 (13%)
Query: 16 KGKAVIISLSPQSRASLAEHFGI-SPLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEAC 74
K K V++ ++P R +L E F I S V K+ ++ LGV I+DTS DLT +E
Sbjct: 220 KDKRVVMQIAPAVRVALGEEFKIKSGENVMDKIVAVMRRLGVDEIYDTSVGADLTTLEES 279
Query: 75 NEFIARYKQ--------------------------SQESDDERSNSSLPMLSSACPGWIC 108
EF+ + K +E + R N P+ +S CP W
Sbjct: 280 KEFLEKIKLESGCISINNDLKHKDLDVVDCHNKNIKKEFFENRRNIRYPLFTSCCPAWYR 339
Query: 109 YAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAR 168
YAE + ++P+ISS KSP + G IK + ++ E V VMPC KK EA R
Sbjct: 340 YAETK-HPELMPHISSCKSPMEMFGVVIKEYFKERDLKEGRETISVAVMPCTAKKAEADR 398
Query: 169 EDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVD 228
E+F RD I ++D VLTT E+ D+I + F+ +E LD +
Sbjct: 399 EEFT----------RD---HIKDIDYVLTTSELCDMINESGIKFDEVEGESLDTPFSLYS 445
Query: 229 DEGHLYGVAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSDFREVA-LEVEGKTLL 287
G ++GV +GG E+V R + K ++ L+F +R D +V +E+ G L
Sbjct: 446 GGGVIFGV---TGGVTESVIRTIYEDQSQKGLK-DLQFVGMRGMDGVKVCEIEING-LQL 500
Query: 288 KFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLE 347
K + G N + I++ ++ K + FVEVMAC GC+ G GQ P K I+ +
Sbjct: 501 KIGIVSGLANAEKIIQSIESGKEHFDFVEVMACNGGCIGGAGQ----PFGLNKTKIERAK 556
Query: 348 TIYLEN--VMLADPFKNPLVRSLYDEWLEQ 375
+Y + + +NP++ ++Y + L+
Sbjct: 557 GLYKADKVAQIKRSSENPMLDTIYKDILKN 586
>gi|352685609|ref|YP_004897594.1| NADH dehydrogenase I subunit G [Acidaminococcus intestini RyC-MR95]
gi|350280264|gb|AEQ23454.1| NADH dehydrogenase I subunit G [Acidaminococcus intestini RyC-MR95]
Length = 580
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 195/393 (49%), Gaps = 33/393 (8%)
Query: 1 MLEKQSLDEFLSNINKGKAV-IISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKS 58
+ E+ D+ S + + + I+ ++P R +L E +G+SP + KL L+ +G +
Sbjct: 206 LRERDDTDKVYSALANPELIPIVQIAPAVRTALCEAYGVSPQEAPMGKLAAALRRMGFRY 265
Query: 59 IFDTSCSRDLTLIEACNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYI 118
++DT DLT++E NEF+ ++K + P+ +S CPGW+ + + + +
Sbjct: 266 VYDTCFGADLTIMEEANEFLEKFKNGK-------TKKFPLFTSCCPGWVRFLKGKFPE-L 317
Query: 119 LPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQ 178
+S+ KSPQQ GA K + +KLG P++++ V++MPC KK E L +
Sbjct: 318 TDRLSTSKSPQQMFGAIAKTWLAKKLGTEPEKLFLVSIMPCLAKKAEC-------DLPTM 370
Query: 179 EETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAG 238
+ + + VD VLTT E + ++ + L+E PLD + G ++GV
Sbjct: 371 QTQHGKD------VDCVLTTREFIRMLNADRIYPHLLKEEPLDDPMGTHTGAGTIFGV-- 422
Query: 239 SSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQN 297
+GG E R A + GK + L F IR RE + G + A+ G N
Sbjct: 423 -TGGVMEAALRTAYYEVTGKDPDPDL-FADIRTGPALRERTYTLGGADV-HCAVVSGLGN 479
Query: 298 LQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVM 355
++++ +K K Y FVEVMACP GC GGGQ P + +++Y + +
Sbjct: 480 ARHLLEAIKAGKVHYDFVEVMACPGGCSGGGGQ--PISIDDEERAEARGQSLYALDQKMA 537
Query: 356 LADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 388
L +NP + +LY E+L P SEKA++ +HT+
Sbjct: 538 LRLSHRNPQIEALYAEFLGSPLSEKAEELLHTD 570
>gi|357633259|ref|ZP_09131137.1| hydrogenase, Fe-only [Desulfovibrio sp. FW1012B]
gi|357581813|gb|EHJ47146.1| hydrogenase, Fe-only [Desulfovibrio sp. FW1012B]
Length = 421
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 164/318 (51%), Gaps = 28/318 (8%)
Query: 15 NKGKAVIISLSPQSRASLAEHFGISPLQVF-KKLTTFLKSLGVKSIFDTSCSRDLTLIEA 73
+K V+ +P R +L + FG+ V +K+ L+ LG +++D + D+T+ E
Sbjct: 97 DKNVQVVAMPAPAVRYALGDAFGLPVGAVTTEKMLAALQKLGCSNVWDNEFAADVTIWEE 156
Query: 74 CNEFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIG 133
+EF+AR + +S+ LP +S CPGW YAE +LP+ SS KSP +G
Sbjct: 157 GSEFLARLTK-------KSDKPLPQFTSCCPGWQKYAE-TFYPELLPHFSSCKSPIGMMG 208
Query: 134 ATIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVD 193
+ K + +K + P ++Y V++MPC KK E R + + +RD +D
Sbjct: 209 SLAKTYGAEKAKYDPAKVYTVSIMPCTAKKYEGLRPE------NDSSGFRD-------ID 255
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAK 253
+ + T E+ +++ ++ +A+ E DK++ ++GV +GG E R A +
Sbjct: 256 ATINTRELAYMLKKAGIDLKAMPEGARDKVMGESTGGATIFGV---TGGVMEAALRFAYQ 312
Query: 254 TLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDY 312
+ K E +FK +R + F+E ++V G T +K A+ +G + + + +VK K Y
Sbjct: 313 AVTNKQPE-SWDFKAVRGLAGFKEATVDV-GGTDVKVAVVHGAKRFKEVCEQVKAGKSPY 370
Query: 313 QFVEVMACPSGCLNGGGQ 330
F+E MACP GC+ GGGQ
Sbjct: 371 HFIEFMACPGGCVMGGGQ 388
>gi|150007689|ref|YP_001302432.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
ATCC 8503]
gi|255013606|ref|ZP_05285732.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_7]
gi|410103537|ref|ZP_11298458.1| hydrogenase, Fe-only [Parabacteroides sp. D25]
gi|423331817|ref|ZP_17309601.1| hydrogenase, Fe-only [Parabacteroides distasonis CL03T12C09]
gi|149936113|gb|ABR42810.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
ATCC 8503]
gi|409229658|gb|EKN22530.1| hydrogenase, Fe-only [Parabacteroides distasonis CL03T12C09]
gi|409236266|gb|EKN29073.1| hydrogenase, Fe-only [Parabacteroides sp. D25]
Length = 596
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 115/376 (30%), Positives = 183/376 (48%), Gaps = 28/376 (7%)
Query: 18 KAVIISLSPQSRASLAEHFGISP-LQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K VI +P R +L FG P V K+ + L+ LG +FDT + DLT++E E
Sbjct: 228 KIVIAQTAPAVRTALGRDFGYEPGTLVTGKMVSALRQLGFDYVFDTDFAADLTIMEEGTE 287
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R D E +P+++S CPGW+ + E+ + +S+ KSPQQ GA
Sbjct: 288 LLHRLGSYLNGDKE---VKIPLMTSCCPGWVSFVEQHFPE-LRDNLSTAKSPQQMFGAIA 343
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + +KLG ++ V++MPC KK EA+R +F + + P+VD +
Sbjct: 344 KSYFAEKLGVDRKDLVVVSIMPCLAKKYEASRPEFSVEGN-------------PDVDYSI 390
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
T E+ LI+ ++F L + D L ++ G++GG E R A + L+
Sbjct: 391 YTRELARLIRYANIDFNELPDGEFDSPLGESTGASVIF---GTTGGVIEAACRTAYE-LY 446
Query: 257 GKVIEGHLEFKTIRNSD-FREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFV 315
K ++F+ +R + R ++ G T +K + +G N + ++ +VK Y +
Sbjct: 447 TKKNLDKVDFEELRGLEGIRSATIDFNG-TPVKIGIAHGLGNARKLIEEVKNGTSPYHAI 505
Query: 316 EVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLE--NVMLADPFKNPLVRSLYDEWL 373
EVMACP GC+ GGGQ P + L + +Y E N L +NP ++ LY E+L
Sbjct: 506 EVMACPGGCIGGGGQ--PFHRGRMEVLRRRASALYREDANKPLRKSHENPYIQQLYSEYL 563
Query: 374 EQPGSEKAKKHVHTEY 389
+P KA K +HT Y
Sbjct: 564 GEPCGPKAHKLLHTHY 579
>gi|260893623|ref|YP_003239720.1| hydrogenase, Fe-only [Ammonifex degensii KC4]
gi|260865764|gb|ACX52870.1| hydrogenase, Fe-only [Ammonifex degensii KC4]
Length = 578
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 193/379 (50%), Gaps = 36/379 (9%)
Query: 18 KAVIISLSPQSRASLAEHFGIS-PLQVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNE 76
K V++ +P ++ E FG+ K+ L+ LG +IFDT+ + DLT++E E
Sbjct: 223 KHVVVQTAPAVHVTIGEMFGLPVGTDATGKIVAALRRLGFDAIFDTNFAADLTIMEEGTE 282
Query: 77 FIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATI 136
+ R ++ LP +S PGWI + E ++P+ SS KSPQQ +G +
Sbjct: 283 LLERIEKG---------GVLPQFTSCSPGWIKFIE-HFYPELIPHFSSCKSPQQMLGPVV 332
Query: 137 KHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVL 196
K + QK G P +++ V++MPC KK EAAR + YRD VD VL
Sbjct: 333 KTYYAQKKGIDPKDVFMVSIMPCTAKKFEAARPEM------NASGYRD-------VDVVL 379
Query: 197 TTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSGGYAETVFRHAAKTLF 256
T+ E+ +I+ ++F L + D G ++ G++GG E R A +
Sbjct: 380 TSRELGRMIKEAGIDFANLPDENYDDPFGIGTGAGQIF---GATGGVMEAALRTAYELAT 436
Query: 257 GKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKC-DYQF 314
GK + L+F +R +E ++E+ GKT +K + +G N + ++ K+K + DY F
Sbjct: 437 GKTLP-KLDFVEVRGMKGVKEASVELNGKT-IKVLVAHGLGNARLLMEKLKAGELKDYHF 494
Query: 315 VEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEW 372
+EVM CP GC+ GGGQ P + + K + IY +N+ +NP ++ LY+E+
Sbjct: 495 IEVMTCPGGCIGGGGQPIPTTTEIRE---KRIAGIYERDKNLPYRKSHENPAIKKLYEEF 551
Query: 373 LEQPGSEKAKKHVHTEYHP 391
L +P S K+ + +HT+Y P
Sbjct: 552 LGKPLSHKSHELLHTKYTP 570
>gi|68464731|ref|XP_723443.1| potential post-translational processing factor Narf [Candida
albicans SC5314]
gi|68465110|ref|XP_723254.1| potential post-translational processing factor Narf [Candida
albicans SC5314]
gi|74587988|sp|Q5APK7.1|NAR1_CANAL RecName: Full=Cytosolic Fe-S cluster assembly factor NAR1; AltName:
Full=Nuclear architecture-related protein 1
gi|46445281|gb|EAL04550.1| potential post-translational processing factor Narf [Candida
albicans SC5314]
gi|46445477|gb|EAL04745.1| potential post-translational processing factor Narf [Candida
albicans SC5314]
Length = 609
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 124/404 (30%), Positives = 182/404 (45%), Gaps = 101/404 (25%)
Query: 17 GKAVIISLSPQSRASLAEHFGISPLQVFKKLTT-FLKSLGVKSIFDTSCSRDLTLIEACN 75
K ++S+S QSRASLA + +S + K L F++ +G I TS R L+LI
Sbjct: 117 NKVFVVSISHQSRASLAMAYNVSIENMDKCLIDLFIRQMGFTYIVGTSLGRKLSLINEAK 176
Query: 76 EFIAR-YKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGA 134
E I R K S + +SS P+LSS CPGW+ YAEK YI+P +S+VKSPQQ G
Sbjct: 177 EIINRKTKGSGTGGIDSDSSSGPILSSICPGWVLYAEKT-HPYIIPKMSTVKSPQQITGC 235
Query: 135 TIKHHICQKLGFRPDEIYHVTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGL-EIPEVD 193
+K+ L +IYH+++MPC+DKKLE+AR + V++ + +EE +D+ L +P+VD
Sbjct: 236 LLKNLTSNSLNIEKSKIYHLSIMPCFDKKLESARPE-VYEEEEEEEEEKDKALVSVPDVD 294
Query: 194 SVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG------------------ 235
V+T E++ L LEE P +++ + L G
Sbjct: 295 CVITAKELITL----------LEECPQYQLIPPTLPQEELIGGGCLSMTEIYKQYAPPNW 344
Query: 236 ----------VAGSSGGYAETVFRHAAKTLFGKVIEGH---LEFKTIRNSDFREVALEVE 282
+SGGYA L K +G+ + RN D E+ L
Sbjct: 345 PFIEISWSNDSGSASGGYAYNYLTIYRNDLILKGYDGNKFTINLINGRNPDIYEMRLMYN 404
Query: 283 GKT---LLKFALCYGFQNLQNIVRKVK--------------------------------- 306
G+ L A+ GF+N+QN+VRK+K
Sbjct: 405 GENKEKLASAAVVNGFRNIQNLVRKLKPNTGKTTNTTTTTTKSKVNPLAARRRARMANNR 464
Query: 307 -------MRKCDYQFVEV------------MACPSGCLNGGGQI 331
+ + Q +E+ MACP+GC+NGGGQI
Sbjct: 465 GKPETKSTSEVNSQEMEIVADASKVDYVEIMACPNGCINGGGQI 508
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,096,698,886
Number of Sequences: 23463169
Number of extensions: 249326051
Number of successful extensions: 633471
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2376
Number of HSP's successfully gapped in prelim test: 876
Number of HSP's that attempted gapping in prelim test: 621692
Number of HSP's gapped (non-prelim): 3701
length of query: 403
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 258
effective length of database: 8,957,035,862
effective search space: 2310915252396
effective search space used: 2310915252396
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)