Query 015642
Match_columns 403
No_of_seqs 175 out of 1351
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 16:09:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lx4_A Fe-hydrogenase; HYDA, H 100.0 4E-105 1E-109 809.1 34.9 374 3-395 24-451 (457)
2 3c8y_A Iron hydrogenase 1; dit 100.0 3.4E-88 1.2E-92 715.8 30.1 360 4-391 208-574 (574)
3 1hfe_L Protein (Fe-only hydrog 100.0 2.4E-76 8.3E-81 603.9 29.2 330 4-362 85-417 (421)
4 1q16_B Respiratory nitrate red 99.9 1.7E-25 5.8E-30 231.2 -15.2 159 6-211 276-450 (512)
5 1hfe_S Protein (Fe-only hydrog 99.8 2E-20 6.7E-25 158.5 2.7 77 321-397 13-100 (123)
6 1wi9_A Protein C20ORF116 homol 78.6 2.7 9.3E-05 31.6 4.5 50 6-62 8-57 (72)
7 1ti6_B Pyrogallol hydroxytrans 54.6 0.07 2.4E-06 50.8 -11.0 47 28-74 164-213 (274)
8 1kqf_B FDH-N beta S, formate d 50.0 2.2 7.5E-05 40.6 -1.3 48 18-69 222-275 (294)
9 2hm3_A Nematocyst outer WALL a 34.3 10 0.00036 22.8 0.4 9 319-327 7-15 (31)
10 2k02_A Ferrous iron transport 33.0 37 0.0013 26.2 3.6 43 6-56 3-45 (87)
11 1xn7_A Hypothetical protein YH 28.2 35 0.0012 25.6 2.6 43 6-56 3-45 (78)
12 2lnd_A De novo designed protei 27.5 2E+02 0.0067 22.0 6.6 64 3-80 36-101 (112)
13 1jy2_N Fibrinogen alpha chain; 25.5 11 0.00039 26.3 -0.6 25 320-349 20-44 (53)
14 3bma_A D-alanyl-lipoteichoic a 23.8 1.2E+02 0.0042 30.0 6.3 58 6-63 277-337 (407)
15 3brc_A Conserved protein of un 23.8 52 0.0018 28.0 3.0 36 17-57 119-155 (156)
16 3kcq_A Phosphoribosylglycinami 22.9 69 0.0024 28.8 4.0 73 5-82 20-104 (215)
17 5nul_A Flavodoxin; electron tr 20.0 1.9E+02 0.0066 22.8 5.9 44 6-59 65-111 (138)
No 1
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster, insertion, biosynthesis, maturation, intermediate, evolution; 1.97A {Chlamydomonas reinhardtii}
Probab=100.00 E-value=3.9e-105 Score=809.06 Aligned_cols=374 Identities=31% Similarity=0.575 Sum_probs=333.4
Q ss_pred ccccHHHHHHHHhCC------CeEEEEeCccchHHHHHHhCCChHHH-HHHHHHHHHHcCCcEEEechhHHHHhHHHHHH
Q 015642 3 EKQSLDEFLSNINKG------KAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACN 75 (403)
Q Consensus 3 ~~qs~~~~~~~l~~~------k~~Vv~iaPq~r~sl~~~f~~~~~~~-~~kl~~~lk~LGf~~V~dt~~gadi~~~e~~~ 75 (403)
+.+++++|+++|+++ |++||+||||+|++|+++||+++++. .++|+++||+|||++||||++|||++++|+++
T Consensus 24 ~~~~~~~v~~aL~~~~~~~~~k~vVasvAPavrasl~~~FGl~~~~~t~gkl~~aLk~LGFd~VfDta~gADlti~EEa~ 103 (457)
T 3lx4_A 24 PLSHVQQALAELAKPKDDPTRKHVCVQVAPAVRVAIAETLGLAPGATTPKQLAEGLRRLGFDEVFDTLFGADLTIMEEGS 103 (457)
T ss_dssp -CCHHHHHHHHHHSCTTCTTCCEEEEEECHHHHHHGGGGGTCCTTCSCHHHHHHHHHHTTCSEEEETHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHhCcCcccCCceEEEEECcHHHHHHHHHhCCCcccccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHH
Confidence 567899999999885 68999999999999999999988775 69999999999999999999999999999999
Q ss_pred HHHHHHhhcccCcccccCCCCCceecCChHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHhHhhCCCCCCeEEEE
Q 015642 76 EFIARYKQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVT 155 (403)
Q Consensus 76 E~~~~~~~~~~~~~~~~~~~~P~isS~CPgwV~yiEk~~~P~lip~Ls~vkSPq~i~g~liK~~~~~~~~~~~~~i~~V~ 155 (403)
||++|+++..... .....++||||||||||||||||+| |+|+||||+++|||||+|+++|+|++++.|++|++|+|||
T Consensus 104 Ef~~r~~~~l~~~-~~~~~~lPmiTScCPgWV~yiEk~y-PeLlp~LSt~kSPqqm~G~liK~y~a~~~gi~p~~i~vV~ 181 (457)
T 3lx4_A 104 ELLHRLTEHLEAH-PHSDEPLPMFTSCCPGWIAMLEKSY-PDLIPYVSSCKSPQMMLAAMVKSYLAEKKGIAPKDMVMVS 181 (457)
T ss_dssp HHHHHHHHHHCC------CCSSEECCCCHHHHHHHHHHC-GGGGGGBCCBCCHHHHHHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred HHHHHHHhhhccc-cccCCCCceEecCCHHHHHHHHHhC-cccccccCCCCCHHHHHHHHHHHHHHHhcCCCcccEEEEE
Confidence 9999985321100 0013578999999999999999999 9999999999999999999999999999999999999999
Q ss_pred EEccchhhHhhhcchhhcccccchhccccCCCCCCCceEEEcHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCcccc
Q 015642 156 VMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYG 235 (403)
Q Consensus 156 I~PC~aKK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLTt~El~~~l~~~~i~~~~l~~~~~d~~~~~~s~~~~~~~ 235 (403)
||||+|||+||.|++|.... ..+.++|||||||+||.+||++.+||+.++++.++|.+++..++.|++||
T Consensus 182 ImPC~AKK~EA~R~e~~~~~----------~~g~~dVD~VLTtrEL~~mik~~gId~~~l~~~~~D~p~g~~sgaG~iFg 251 (457)
T 3lx4_A 182 IMPCTRKQSEADRDWFCVDA----------DPTLRQLDHVITTVELGNIFKERGINLAELPEGEWDNPMGVGSGAGVLFG 251 (457)
T ss_dssp EESCSSHHHHHTCTTCBCC-------------CCBSSCEEEEHHHHHHHHHHTTCCGGGSCCCCCCCTTSSSSSCSCCSS
T ss_pred EEcccchHHHhcCccccccc----------ccCCccccEEeeHHHHHHHHHHcCCChhhCCcccccccccccCCCceecC
Confidence 99999999999999884310 11467999999999999999999999999999999999999999999999
Q ss_pred ccCCCccHHHHHHHHHHHHhhccccccccceeeecCCC-cEEEEEEe---------------------------------
Q 015642 236 VAGSSGGYAETVFRHAAKTLFGKVIEGHLEFKTIRNSD-FREVALEV--------------------------------- 281 (403)
Q Consensus 236 ~~~~SGG~~e~i~~~~~~~l~~~~~~~~~~~~~~rn~d-~~e~~l~~--------------------------------- 281 (403)
. ||||+|+++|++++.++|.++ ..++|+.+||.| |+|+++.+
T Consensus 252 ~---sGGV~EAv~r~a~~~~~g~~~-~~~~~~~vrg~~g~kea~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (457)
T 3lx4_A 252 T---TGGVMEAALRTAYELFTGTPL-PRLSLSEVRGMDGIKETNITMVPAPGSKFEELLKHRAAARAEAAAHGTPGPLAW 327 (457)
T ss_dssp B---CCCHHHHHHHHHHHHHHSSCC-CCCCCEECTTCTTEEEEEEEECCCTTSHHHHHHHHCCC-----------CCSCC
T ss_pred C---cccHHHHHHHHHHHHhhCCCC-ccccceeecCCCCceEEEEEeccccccchhhhhhhhhhhhhccccccccccccc
Confidence 8 999999999999999999988 478999999975 99999887
Q ss_pred ---------C--CeeeEEEEEEechHHHHHHHHHHhcCCCCCcEEEecCCcccccCCCCCcCCCCCCChhHHHHHHHHHH
Q 015642 282 ---------E--GKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIY 350 (403)
Q Consensus 282 ---------~--g~~~~~~a~v~G~~ni~~~l~~lk~gk~~~~fIEvmACpgGCinGgGq~~~~~~~~~~~~~~~~~~~y 350 (403)
+ |...+++|+||||+|++++|++|++|+++|||||||||||||||||||+++.. .....+|++.+|
T Consensus 328 ~~~~~~~~~~~~~g~~l~vav~~G~~n~~~ll~~~k~G~~~y~fVEvMACPgGCi~GgGQp~~~~---~~~~~~r~~~ly 404 (457)
T 3lx4_A 328 DGGAGFTSEDGRGGITLRVAVANGLGNAKKLITKMQAGEAKYDFVEIMACPAGCVGGGGQPRSTD---KAITQKRQAALY 404 (457)
T ss_dssp CSCEEECCTTCCCEEEEEEEEEESHHHHHHHHHHHHHTSSCCSEEEEESSTTCGGGCTTSCCCSC---TTHHHHHHHTSS
T ss_pred ccccccccccCCCCeEEEEEEEcCHHHHHHHHHHHHcCCCCccEEEECCCCccccCCcccccccc---HHHHHHHHHHHH
Confidence 1 34458999999999999999999999999999999999999999999999864 234455888899
Q ss_pred hhc--ccCCCCCCChHHHHHHHHHhcCCCChhhhcceeeeecccccc
Q 015642 351 LEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKS 395 (403)
Q Consensus 351 ~~~--~~~~~~~~n~~v~~ly~~~l~~~~~~~~~~llht~y~~~~~~ 395 (403)
..+ ..+|.|++||.|++||++||++|+++++|+||||+|+++.+.
T Consensus 405 ~~d~~~~~r~s~eNp~v~~lY~~~l~~p~s~~ah~lLHT~y~~~~~~ 451 (457)
T 3lx4_A 405 NLDEKSTLRRSHENPSIRELYDTYLGEPLGHKAHELLHTHYVAGGVE 451 (457)
T ss_dssp CHHHHTSBCCGGGCHHHHHHHHHTTCSTTSHHHHHHHBCCCCTTCC-
T ss_pred HHhhcCCccCCCcCHHHHHHHHHHhCCCCcHHHHHhcCccccccCcc
Confidence 743 467999999999999999999999999999999999998764
No 2
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=100.00 E-value=3.4e-88 Score=715.81 Aligned_cols=360 Identities=31% Similarity=0.558 Sum_probs=330.1
Q ss_pred cccHHHHHHHHhC-CCeEEEEeCccchHHHHHHhCCChH-HHHHHHHHHHHHcCCcEEEechhHHHHhHHHHHHHHHHHH
Q 015642 4 KQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPL-QVFKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARY 81 (403)
Q Consensus 4 ~qs~~~~~~~l~~-~k~~Vv~iaPq~r~sl~~~f~~~~~-~~~~kl~~~lk~LGf~~V~dt~~gadi~~~e~~~E~~~~~ 81 (403)
..+..++++.+.+ .+.++++++|++++|+++.|+++++ ++.++|+.+||++||++|+||++++|++++|++.||++++
T Consensus 208 ~~~~~~v~~~l~~~~~~~v~~~ap~v~~s~ge~f~~~~g~~~~~~l~~alk~lGf~~v~dt~~~adl~~~ee~~e~ld~~ 287 (574)
T 3c8y_A 208 KSHMDRVKNALNAPEKHVIVAMAPSVRASIGELFNMGFGVDVTGKIYTALRQLGFDKIFDINFGADMTIMEEATELVQRI 287 (574)
T ss_dssp CCCHHHHHHHHHCTTCEEEEEECGGGGGTGGGGGTCCSSCCCHHHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHhhccccceeEEeeCCceeeechhhhccccCchHHHHHHHHHHHcCCCEEeecccchhHHHHHHHHHHHHHH
Confidence 4567889999984 7889999999999999999998865 4569999999999999999999999999999999999998
Q ss_pred hhcccCcccccCCCCCceecCChHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHhHhhCCCCCCeEEEEEEccch
Q 015642 82 KQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 161 (403)
Q Consensus 82 ~~~~~~~~~~~~~~~P~isS~CPgwV~yiEk~~~P~lip~Ls~vkSPq~i~g~liK~~~~~~~~~~~~~i~~V~I~PC~a 161 (403)
++ +..+|||||||||||+|+||+| |+|+||||+++|||+|+|+++|+++++++|++|++|+|||||||+|
T Consensus 288 ~~---------~~~~p~itScCP~wv~~~e~~~-p~l~~~ls~~~SP~~~~g~~~K~~~~~~~~~~~~~i~~v~i~PC~a 357 (574)
T 3c8y_A 288 EN---------NGPFPMFTSCCPGWVRQAENYY-PELLNNLSSAKSPQQIFGTASKTYYPSISGLDPKNVFTVTVMPCTS 357 (574)
T ss_dssp HH---------TCSCCEECCCCHHHHHHHHHHC-GGGGGGBCCBCCHHHHHHHHHTTHHHHTTCCCGGGEEEEEEESCSH
T ss_pred hh---------cCCceEEEecCHHHHHHHHHhc-hhhcCcCccCCCHHHHHHHHHHhhhHhhcCCCcCcEEEEEEeCCCc
Confidence 64 4578999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcchhhcccccchhccccCCCCCCCceEEEcHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCccccccCCCc
Q 015642 162 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSG 241 (403)
Q Consensus 162 KK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLTt~El~~~l~~~~i~~~~l~~~~~d~~~~~~s~~~~~~~~~~~SG 241 (403)
||+||.|+++... +.++||+||||+||.+||++.+|++.+++++++|.+++..++.|++||. ||
T Consensus 358 KK~Ea~r~~~~~~-------------~~~~vD~vlT~~El~~~~~~~~i~~~~l~~~~~d~~~~~~s~~g~~f~~---sG 421 (574)
T 3c8y_A 358 KKFEADRPQMEKD-------------GLRDIDAVITTRELAKMIKDAKIPFAKLEDSEADPAMGEYSGAGAIFGA---TG 421 (574)
T ss_dssp HHHHHTCTTSEET-------------TEESCSEEEEHHHHHHHHHHTTCCGGGCCCCCCCGGGTCCCHHHHTTTS---TT
T ss_pred ccccccccccccC-------------CCCccCEEEcHHHHHHHHHHcCCCcccCCcccccccccccCcCcccccC---cc
Confidence 9999999987432 3579999999999999999999999999999999999888888999887 99
Q ss_pred cHHHHHHHHHHHHhhccccccccceeeecCC-CcEEEEEEeCCeeeEEEEEEechHHHHHHHHHHhcCCCCCcEEEecCC
Q 015642 242 GYAETVFRHAAKTLFGKVIEGHLEFKTIRNS-DFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMAC 320 (403)
Q Consensus 242 G~~e~i~~~~~~~l~~~~~~~~~~~~~~rn~-d~~e~~l~~~g~~~~~~a~v~G~~ni~~~l~~lk~gk~~~~fIEvmAC 320 (403)
||+++++|++++.++|.+++ .++|+.+||. |++|+++.++|.. +++|+||||+|++++|+++++|+.+|||||+|||
T Consensus 422 Gv~ea~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~e~~~~~~~~~-~~~~~~~G~~n~~~~l~~~~~g~~~~~fiEvmaC 499 (574)
T 3c8y_A 422 GVMEAALRSAKDFAENAELE-DIEYKQVRGLNGIKEAEVEINNNK-YNVAVINGASNLFKFMKSGMINEKQYHFIEVMAC 499 (574)
T ss_dssp HHHHHHHHHHHHHHHTCCCS-CCCCGGGCSSCSEEEEEEEETTEE-EEEEEEESHHHHHHHHHTSGGGSSCCCEEEEESS
T ss_pred cHHHHHHHHHHHHhcCCCCc-ccceeeecCCCCcEEEEEEeCCeE-EEEEEEeCHHHHHHHHHHHHcCCCCCCEEEECCC
Confidence 99999999999999999884 6899999995 7999999999886 6999999999999999999999999999999999
Q ss_pred cccccCCCCCcCCCCCC--ChhHHHHHHHHHHhhc--ccCCCCCCChHHHHHHHHHhcCCCChhhhcceeeeecc
Q 015642 321 PSGCLNGGGQIKPKPGQ--SPKELIKTLETIYLEN--VMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHP 391 (403)
Q Consensus 321 pgGCinGgGq~~~~~~~--~~~~~~~~~~~~y~~~--~~~~~~~~n~~v~~ly~~~l~~~~~~~~~~llht~y~~ 391 (403)
||||+|||||+++.... ..+.+.+|++.+|..+ ..++.|++||.+++||++||++|.++++|+||||+||+
T Consensus 500 pgGCi~G~gq~~~~~~~~~~~~~~~~r~~~ly~~d~~~~~~~~~~n~~~~~ly~~~l~~p~~~~~~~llht~y~~ 574 (574)
T 3c8y_A 500 HGGCVNGGGQPHVNPKDLEKVDIKKVRASVLYNQDEHLSKRKSHENTALVKMYQNYFGKPGEGRAHEILHFKYKK 574 (574)
T ss_dssp TTSGGGCTTSCCCCHHHHHHSCHHHHHHHHHHHHHHHCSCCSGGGCHHHHHHHHHTTCSTTSHHHHHHSBCCCCC
T ss_pred CCCccCCCCcccCcccccchHHHHHHHHHHHHHhhccCCccCcccCHHHHHHHHHHhcCCCCHHHHHHhcccCcC
Confidence 99999999999875310 1356788999999643 56789999999999999999999999999999999984
No 3
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=100.00 E-value=2.4e-76 Score=603.87 Aligned_cols=330 Identities=29% Similarity=0.527 Sum_probs=285.2
Q ss_pred cccHHHHHHHHhCC-CeEEEEeCccchHHHHHHhCCChHHH-HHHHHHHHHHcCCcEEEechhHHHHhHHHHHHHHHHHH
Q 015642 4 KQSLDEFLSNINKG-KAVIISLSPQSRASLAEHFGISPLQV-FKKLTTFLKSLGVKSIFDTSCSRDLTLIEACNEFIARY 81 (403)
Q Consensus 4 ~qs~~~~~~~l~~~-k~~Vv~iaPq~r~sl~~~f~~~~~~~-~~kl~~~lk~LGf~~V~dt~~gadi~~~e~~~E~~~~~ 81 (403)
+....++.+.+++. +.+|+++||++++|+++.|++++++. .++|.++||++||++||||++++|++++|++.||++++
T Consensus 85 ~~~~~~v~~~l~d~~~~vv~~~ap~v~~slge~fg~~~g~~~~~kl~~aLk~lGf~~v~dT~~~ad~~~~ee~~e~~~~~ 164 (421)
T 1hfe_L 85 QSWVPEVEKKLKDGKVKCIAMPAPAVRYALGDAFGMPVGSVTTGKMLAALQKLGFAHCWDTEFTADVTIWEEGSEFVERL 164 (421)
T ss_dssp CCCHHHHHHHHHCTTCEEEEEECGGGGGTGGGGGTCCTTCCCHHHHHHHHHHHTCSEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhcccccceeeecccceeehhHHHhCCCcccccHHHHHHHHHhhcCCccccccccchHHHHHHHHHHHHHH
Confidence 44567888888876 46789999999999999999987776 79999999999999999999999999999999999998
Q ss_pred hhcccCcccccCCCCCceecCChHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHhHhhCCCCCCeEEEEEEccch
Q 015642 82 KQSQESDDERSNSSLPMLSSACPGWICYAEKQLGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYHVTVMPCYD 161 (403)
Q Consensus 82 ~~~~~~~~~~~~~~~P~isS~CPgwV~yiEk~~~P~lip~Ls~vkSPq~i~g~liK~~~~~~~~~~~~~i~~V~I~PC~a 161 (403)
+.. ....+|+|||||||||+|+|++| |+++||||+++|||+|+|.++|.|+.++.+++|++|++|+||||+|
T Consensus 165 k~~-------~~~~~p~~Ts~CP~wv~~~e~~~-p~ll~~ls~~~sP~~i~~~lik~~~~~~~~~~~~~i~~V~I~PC~a 236 (421)
T 1hfe_L 165 TKK-------SDMPLPQFTSCCPGWQKYAETYY-PELLPHFSTCKSPIGMNGALAKTYGAERMKYDPKQVYTVSIMPCIA 236 (421)
T ss_dssp TTS-------SCSCSSEECCCCHHHHHHHHHHC-GGGGGGBCSBCCHHHHHHHHHTTHHHHHHTCCGGGEEEEEEESCSH
T ss_pred hhc-------CcccCcccccCCHHHHHHHHHhh-HHHHhhccCCCCCceeehhhhchhhhhhcCCChhhEEEEEEeCCcc
Confidence 531 12468999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcchhhcccccchhccccCCCCCCCceEEEcHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCccccccCCCc
Q 015642 162 KKLEAAREDFVFQLDSQEETYRDEGLEIPEVDSVLTTGEVLDLIQLKAVNFEALEESPLDKMLTNVDDEGHLYGVAGSSG 241 (403)
Q Consensus 162 KK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~VD~VLTt~El~~~l~~~~i~~~~l~~~~~d~~~~~~s~~~~~~~~~~~SG 241 (403)
||.|+.|+++... +.++||+||||+||.+||++.+|++.+++++++|.+++..++.|++||. ||
T Consensus 237 KK~Ea~r~~~~~~-------------~~~~vD~vlT~~El~~~~~~~gi~~~~l~~~~~d~~~~~~s~~g~~fg~---sG 300 (421)
T 1hfe_L 237 KKYEGLRPELKSS-------------GMRDIDATLTTRELAYMIKKAGIDFAKLPDGKRDSLMGESTGGATIFGV---TG 300 (421)
T ss_dssp HHHHHTCTTCCTT-------------SSCSCCEEEEHHHHHHHHHHTTCCGGGCCCCCCCTTTCCCCHHHHGGGS---TT
T ss_pred hHHHhcCcccccc-------------CCCCCCeeeeHHHHHHHHHHcCCCcccCCcccccccccccCCCccccCC---Cc
Confidence 9999999987432 3579999999999999999999999999999999999888889999988 99
Q ss_pred cHHHHHHHHHHHHhhccccccccceeeecC-CCcEEEEEEeCCeeeEEEEEEechHHHHHHHHHHhcCCCCCcEEEecCC
Q 015642 242 GYAETVFRHAAKTLFGKVIEGHLEFKTIRN-SDFREVALEVEGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMAC 320 (403)
Q Consensus 242 G~~e~i~~~~~~~l~~~~~~~~~~~~~~rn-~d~~e~~l~~~g~~~~~~a~v~G~~ni~~~l~~lk~gk~~~~fIEvmAC 320 (403)
||+++++|++++.++|.+++ .++|+.+|| .|++|+++.++|.. +++|+||||+|++++|++++.|+.+|||||+|||
T Consensus 301 Gv~ea~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~e~~~~~~~~~-~~~~~~~G~~n~~~~l~~~k~g~~~~~fiEvmaC 378 (421)
T 1hfe_L 301 GVMEAALRFAYEAVTGKKPD-SWDFKAVRGLDGIKEATVNVGGTD-VKVAVVHGAKRFKQVCDDVKAGKSPYHFIEYMAC 378 (421)
T ss_dssp HHHHHHHHHHHHHHHSSCCS-CSCCGGGCSSCSEEEEEEEETTEE-EEEEEEESGGGHHHHHHHHHTTCCCCSEEEEESS
T ss_pred CHHHHHHHHHHHHhcCCCCc-cccceeeccCCCceEEEEecCCeE-EEEEEEcCHHHHHHHHHHHHcCCCCCcEEEECCC
Confidence 99999999999999999885 689999998 58999999999864 7999999999999999999999999999999999
Q ss_pred cccccCCCCCcCCCCCCChhHHHHHHHHHHhhcccCCCCCCC
Q 015642 321 PSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKN 362 (403)
Q Consensus 321 pgGCinGgGq~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~n 362 (403)
||||+|||||++.+. ..+.+.+|++.+|..+.. +.|++|
T Consensus 379 pgGCi~G~gq~~~~~--~~~~~~~r~~~~y~~~~~-~~~~~~ 417 (421)
T 1hfe_L 379 PGGCVCGGGQPVMPG--VLEAMDRTTTRLYAGLKK-RLAMAS 417 (421)
T ss_dssp TTSGGGCTTSCCCTT--SSCCC--------------------
T ss_pred CCCCcCCCCccCCCC--CHHHHHHHHHHHHHHhhh-hcChhh
Confidence 999999999998744 346788899999976654 555555
No 4
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=99.86 E-value=1.7e-25 Score=231.17 Aligned_cols=159 Identities=13% Similarity=0.072 Sum_probs=130.2
Q ss_pred cHHHHHHHHhC--CCeEEEEeCccchHHHHHHhCCChHHHHHHHHHHHHHcCCc-EEEechhHHHHhHHHHHHHHHHHHh
Q 015642 6 SLDEFLSNINK--GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVK-SIFDTSCSRDLTLIEACNEFIARYK 82 (403)
Q Consensus 6 s~~~~~~~l~~--~k~~Vv~iaPq~r~sl~~~f~~~~~~~~~kl~~~lk~LGf~-~V~dt~~gadi~~~e~~~E~~~~~~ 82 (403)
+.++++++++. ++.++++++| +|...|+ .+|+++||+|||+ +|+||++++ ++.++++||++++.
T Consensus 276 d~~~v~e~l~~~~~k~v~~~~~p----~~~~~f~-------~kvi~ALk~lGf~~~v~eta~~A--~i~ee~~E~~~~l~ 342 (512)
T 1q16_B 276 DADAIERAASTENEKDLYQRQLD----VFLDPND-------PKVIEQAIKDGIPLSVIEAAQQS--PVYKMAMEWKLALP 342 (512)
T ss_dssp EGGGHHHHHTCSSGGGHHHHHHT----TEECTTC-------HHHHHHHHHTTCCHHHHHHHTTC--HHHHHHTTSCCCEE
T ss_pred CHHHHHHHHhcccccceEEEecc----cccCccc-------HHHHHHHHHcCCCceEeeccccc--HHHHHHHHHHHHhh
Confidence 34667777743 3667777777 7888887 5999999999999 999999999 56888888876653
Q ss_pred hcccCcccccCCCCCceecC---ChHH---HHHHH-Hh--cCCCCCCCCCCCCCHHHHHHHHHHHHHhHhhCCCCCCeEE
Q 015642 83 QSQESDDERSNSSLPMLSSA---CPGW---ICYAE-KQ--LGSYILPYISSVKSPQQTIGATIKHHICQKLGFRPDEIYH 153 (403)
Q Consensus 83 ~~~~~~~~~~~~~~P~isS~---CPgw---V~yiE-k~--~~P~lip~Ls~vkSPq~i~g~liK~~~~~~~~~~~~~i~~ 153 (403)
..+.|+++|| ||+| |+|+| ++ | |+|+||||+++|||+++|+++|.+. |++|++
T Consensus 343 ----------~~p~~~ttscv~ycP~~~~~v~~ie~~~~~~-P~l~~~ls~~~SPm~~~a~l~K~~~-------~~~v~~ 404 (512)
T 1q16_B 343 ----------LHPEYRTLPMVWYVPPLSPIQSAADAGELGS-NGILPDVESLRIPVQYLANLLTAGD-------TKPVLR 404 (512)
T ss_dssp ----------SCGGGSSCCSEEEECCCCCBCCCSSSCCCBT-TBTSCCGGGBSSCHHHHHHHHSTTC-------HHHHHH
T ss_pred ----------cCCcCCcccCccccCCcHHHHHHHHhcccCC-ccccccccccchHHHHHHHHhhhcC-------CccEEE
Confidence 2345889999 9999 99999 98 9 9999999999999999999999974 455654
Q ss_pred EEEEccchhhHhhhcchhhcccccchhccccCCCCCCCc----eEEEcHHHHHHHHHhcCCC
Q 015642 154 VTVMPCYDKKLEAAREDFVFQLDSQEETYRDEGLEIPEV----DSVLTTGEVLDLIQLKAVN 211 (403)
Q Consensus 154 V~I~PC~aKK~Ea~r~~~~~~~~~~~~~~~~~~~~~~~V----D~VLTt~El~~~l~~~~i~ 211 (403)
| +||+||.|+++.... ..+..|+ |+|||++||.+|++..+|.
T Consensus 405 v------~kk~ea~R~~~~~~~----------~~~~~d~~~~~d~~lT~~e~~~m~r~~~i~ 450 (512)
T 1q16_B 405 A------LKRMLAMRHYKRAET----------VDGKVDTRALEEVGLTEAQAQEMYRYLAIA 450 (512)
T ss_dssp H------HHHHHHHHHHHHHHH----------TTCCCCCHHHHHTTCCHHHHHHHHHHHTTC
T ss_pred E------echhhhccHhhhhcc----------CCCcccchhHhhcCCCHHHHHHHHHHhCcc
Confidence 4 999999999885321 0134667 9999999999999998876
No 5
>1hfe_S Protein (Fe-only hydrogenase (E.C.1.18.99.1) (smaller subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: a.137.4.1 PDB: 1e08_D* 1gx7_D*
Probab=99.79 E-value=2e-20 Score=158.52 Aligned_cols=77 Identities=18% Similarity=0.357 Sum_probs=52.9
Q ss_pred cccccCCCCCcCCCCCCC---------hhHHHHHHHHHHh--hcccCCCCCCChHHHHHHHHHhcCCCChhhhcceeeee
Q 015642 321 PSGCLNGGGQIKPKPGQS---------PKELIKTLETIYL--ENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEY 389 (403)
Q Consensus 321 pgGCinGgGq~~~~~~~~---------~~~~~~~~~~~y~--~~~~~~~~~~n~~v~~ly~~~l~~~~~~~~~~llht~y 389 (403)
||||||||||+.+..... .+.+.+|++.+|. ....++.|++||.|++||++||++|+++++|+||||+|
T Consensus 13 PgGCInGGGQp~~~~~~~~~~~~~~~~~~~~~~R~e~LY~~D~~~~iR~sheNp~V~~LY~e~Lg~P~s~kAheLLHT~Y 92 (123)
T 1hfe_S 13 KVACVTTGAALIGIRMTGKAVAAVKQIKDYMLDRINGVYGADAKFPVRASQDNTQVKALYKSYLEKPLGHKSHDLLHTHW 92 (123)
T ss_dssp -----------------------CCCHHHHHHHHHHHHHHHHHHCSCCSGGGCHHHHHHHHHTTCSTTSHHHHHHHBCCC
T ss_pred cceeeccCCccCCCcccchhhhcccccHHHHHHHHHHHHHHhhcCcccCCCcCHHHHHHHHHHHcCCCcHHHHHHhCccc
Confidence 999999999998865433 5778899999997 34477999999999999999999999999999999999
Q ss_pred cccccccc
Q 015642 390 HPVVKSIT 397 (403)
Q Consensus 390 ~~~~~~~~ 397 (403)
+++++..+
T Consensus 93 ~~r~k~~~ 100 (123)
T 1hfe_S 93 FDKSKGVK 100 (123)
T ss_dssp CCCTHHHH
T ss_pred cccccccc
Confidence 99987654
No 6
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=78.55 E-value=2.7 Score=31.63 Aligned_cols=50 Identities=26% Similarity=0.434 Sum_probs=39.3
Q ss_pred cHHHHHHHHhCCCeEEEEeCccchHHHHHHhCCChHHHHHHHHHHHHHcCCcEEEec
Q 015642 6 SLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSIFDT 62 (403)
Q Consensus 6 s~~~~~~~l~~~k~~Vv~iaPq~r~sl~~~f~~~~~~~~~kl~~~lk~LGf~~V~dt 62 (403)
-+.+|++.|++.|.+ .+. -||++|+++-.++..+|..+...=...-|+|-
T Consensus 8 ll~~Fi~yIk~~Kvv--~Le-----dLA~~F~l~t~~~i~RI~~Le~~g~ltGViDD 57 (72)
T 1wi9_A 8 FLTEFINYIKKSKVV--LLE-----DLAFQMGLRTQDAINRIQDLLTEGTLTGVIDD 57 (72)
T ss_dssp HHHHHHHHHHHCSEE--CHH-----HHHHHHCSCHHHHHHHHHHHHHHSSSCEEECT
T ss_pred HHHHHHHHHHHcCee--eHH-----HHHHHhCCChHHHHHHHHHHHHCCCeEEEEeC
Confidence 367899999987754 333 69999999999888988888877667777763
No 7
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=54.61 E-value=0.07 Score=50.78 Aligned_cols=47 Identities=11% Similarity=-0.016 Sum_probs=33.7
Q ss_pred chHHHHHH--hCCChHHHHHHHHHHHHHcCCcEEE-echhHHHHhHHHHH
Q 015642 28 SRASLAEH--FGISPLQVFKKLTTFLKSLGVKSIF-DTSCSRDLTLIEAC 74 (403)
Q Consensus 28 ~r~sl~~~--f~~~~~~~~~kl~~~lk~LGf~~V~-dt~~gadi~~~e~~ 74 (403)
++..+.+. |++.++...+..+.+++.+||++|| |++|++|++++|++
T Consensus 164 v~~~~~~~~~~~l~~~~~t~p~v~y~~~~~f~~~~l~~~~~a~~~~~~~~ 213 (274)
T 1ti6_B 164 MAKKVEEEGLEVIKPELGTKPRVYYKNLYRFEKNYVTAGILVQGDCFEGA 213 (274)
T ss_dssp HHHHHHHHTCBCSSGGGCCCCSEEEESTHHHHCEEEEEEEEETTEECTTC
T ss_pred HHHHHhhccccccCcccCCCCeEEEEcCCCceeEeeccccccccccccCC
Confidence 44444444 6776654444455678899999999 99999999887754
No 8
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=50.02 E-value=2.2 Score=40.63 Aligned_cols=48 Identities=19% Similarity=0.155 Sum_probs=34.6
Q ss_pred CeEEEEe----CccchHHHHHHhCCCh--HHHHHHHHHHHHHcCCcEEEechhHHHHh
Q 015642 18 KAVIISL----SPQSRASLAEHFGISP--LQVFKKLTTFLKSLGVKSIFDTSCSRDLT 69 (403)
Q Consensus 18 k~~Vv~i----aPq~r~sl~~~f~~~~--~~~~~kl~~~lk~LGf~~V~dt~~gadi~ 69 (403)
..++.++ +| ++..+|+-.+ .....++..+||.|||..|+++++|+++.
T Consensus 222 ~~v~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~ 275 (294)
T 1kqf_B 222 THVMYVLHHADQP----ELYHGLPKDPKIDTSVSLWKGALKPLAAAGFIATFAGLIFH 275 (294)
T ss_dssp BSEEEEETTTTCG----GGTTTCCSSCCCCHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEccCCCc----hhhccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466665 56 5665565311 23458899999999999999999999876
No 9
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=34.29 E-value=10 Score=22.81 Aligned_cols=9 Identities=56% Similarity=1.420 Sum_probs=6.9
Q ss_pred CCcccccCC
Q 015642 319 ACPSGCLNG 327 (403)
Q Consensus 319 ACpgGCinG 327 (403)
.||+||-+-
T Consensus 7 tcpsgcsgd 15 (31)
T 2hm3_A 7 TCPSGCSGD 15 (31)
T ss_dssp CCCTTCCGG
T ss_pred cCCCCcCcc
Confidence 499999754
No 10
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=33.04 E-value=37 Score=26.21 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=31.7
Q ss_pred cHHHHHHHHhCCCeEEEEeCccchHHHHHHhCCChHHHHHHHHHHHHHcCC
Q 015642 6 SLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGV 56 (403)
Q Consensus 6 s~~~~~~~l~~~k~~Vv~iaPq~r~sl~~~f~~~~~~~~~kl~~~lk~LGf 56 (403)
++.++++.|+....+ +++ -|+..|++|+ .+.++....|-+.|.
T Consensus 3 ~L~~Il~~L~~~g~v--sv~-----eLA~~l~VS~-~TIRrDL~~Le~~G~ 45 (87)
T 2k02_A 3 SLMEVRDMLALQGRM--EAK-----QLSARLQTPQ-PLIDAMLERMEAMGK 45 (87)
T ss_dssp CTHHHHHHHHHSCSE--EHH-----HHHHHTTCCH-HHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHcCCC--cHH-----HHHHHHCcCH-HHHHHHHHHHHHCCC
Confidence 457788888876653 333 5999999997 466777778887785
No 11
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=28.24 E-value=35 Score=25.63 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=29.8
Q ss_pred cHHHHHHHHhCCCeEEEEeCccchHHHHHHhCCChHHHHHHHHHHHHHcCC
Q 015642 6 SLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGV 56 (403)
Q Consensus 6 s~~~~~~~l~~~k~~Vv~iaPq~r~sl~~~f~~~~~~~~~kl~~~lk~LGf 56 (403)
++.++++.|++...+ +++ -|+..|++|+ .+.++....|-+.|.
T Consensus 3 ~L~~Il~~L~~~g~v--sv~-----eLa~~l~VS~-~TIRrdL~~Le~~G~ 45 (78)
T 1xn7_A 3 SLIQVRDLLALRGRM--EAA-----QISQTLNTPQ-PMINAMLQQLESMGK 45 (78)
T ss_dssp CHHHHHHHHHHSCSB--CHH-----HHHHHTTCCH-HHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHcCCC--cHH-----HHHHHHCcCH-HHHHHHHHHHHHCCC
Confidence 467788888776543 222 6999999997 455666667766664
No 12
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.52 E-value=2e+02 Score=21.98 Aligned_cols=64 Identities=17% Similarity=0.393 Sum_probs=39.6
Q ss_pred ccccHHHHHHHHhC-CCeEEEEeCccchHHHHHHhCCChHHHHHHHHHHHHHcCCcE-EEechhHHHHhHHHHHHHHHHH
Q 015642 3 EKQSLDEFLSNINK-GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKS-IFDTSCSRDLTLIEACNEFIAR 80 (403)
Q Consensus 3 ~~qs~~~~~~~l~~-~k~~Vv~iaPq~r~sl~~~f~~~~~~~~~kl~~~lk~LGf~~-V~dt~~gadi~~~e~~~E~~~~ 80 (403)
+.|++.++++.+++ +|++||.+--++.-- ...+-.--|+-|+.| |.-.+-..+++ +..+||+..
T Consensus 36 ssqdirdiiksmkdngkplvvfvngasqnd------------vnefqneakkegvsydvlkstdpeelt--qrvreflkt 101 (112)
T 2lnd_A 36 SSQDIRDIIKSMKDNGKPLVVFVNGASQND------------VNEFQNEAKKEGVSYDVLKSTDPEELT--QRVREFLKT 101 (112)
T ss_dssp SHHHHHHHHHHHTTCCSCEEEEECSCCHHH------------HHHHHHHHHHHTCEEEEEECCCHHHHH--HHHHHHHHH
T ss_pred chhhHHHHHHHHHhcCCeEEEEecCccccc------------HHHHHHHHHhcCcchhhhccCCHHHHH--HHHHHHHHh
Confidence 45788888888877 578888876643221 123333456778764 56555556554 556777753
No 13
>1jy2_N Fibrinogen alpha chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_N
Probab=25.48 E-value=11 Score=26.34 Aligned_cols=25 Identities=24% Similarity=0.561 Sum_probs=13.5
Q ss_pred CcccccCCCCCcCCCCCCChhHHHHHHHHH
Q 015642 320 CPSGCLNGGGQIKPKPGQSPKELIKTLETI 349 (403)
Q Consensus 320 CpgGCinGgGq~~~~~~~~~~~~~~~~~~~ 349 (403)
||+||-.-|-.-+ ..+++.+|++++
T Consensus 20 CPsGCRm~Glid~-----~~~d~~~RI~kl 44 (53)
T 1jy2_N 20 CPSGCRMKGLIDE-----VDQDFTSRINKL 44 (53)
T ss_dssp EECHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred CCCcccchhhHHH-----HHHHHHHHHHHH
Confidence 9999964332211 234555566554
No 14
>3bma_A D-alanyl-lipoteichoic acid synthetase; structural genomics, D-alanyl-lipoteichoic acid biosynthesis structure initiative, PSI-2; 2.24A {Streptococcus pneumoniae}
Probab=23.81 E-value=1.2e+02 Score=30.03 Aligned_cols=58 Identities=24% Similarity=0.259 Sum_probs=42.0
Q ss_pred cHHHHHHHHhCCCeEEEEeCccchHHHHHHhCCChHH---HHHHHHHHHHHcCCcEEEech
Q 015642 6 SLDEFLSNINKGKAVIISLSPQSRASLAEHFGISPLQ---VFKKLTTFLKSLGVKSIFDTS 63 (403)
Q Consensus 6 s~~~~~~~l~~~k~~Vv~iaPq~r~sl~~~f~~~~~~---~~~kl~~~lk~LGf~~V~dt~ 63 (403)
|..-+|+.+++.+.-|..|.|.+=.-.+.+-|++.+. ...||...+++-||..|.|.+
T Consensus 277 Dlql~L~~~k~~~~~vlfVi~PVNgkWydytGl~~e~r~~~~~KIk~~l~s~Gf~~i~D~s 337 (407)
T 3bma_A 277 DLQLVLTQFSKSKVNPIFIIPPVNKKWMDYAGLREDMYQQTVQKIRYQLESQGFTNIADFS 337 (407)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCCCHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCCCEEECT
T ss_pred HHHHHHHHHHHcCCceEEEEeCCchHHHHhcCCCHHHHHHHHHHHHHHHHHCCCcceeecc
Confidence 4667888887765544444444555567777988654 348999999999998899986
No 15
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=23.77 E-value=52 Score=27.96 Aligned_cols=36 Identities=19% Similarity=0.415 Sum_probs=26.8
Q ss_pred CCeEEEEeCccchHHHHHHhCCChHHHH-HHHHHHHHHcCCc
Q 015642 17 GKAVIISLSPQSRASLAEHFGISPLQVF-KKLTTFLKSLGVK 57 (403)
Q Consensus 17 ~k~~Vv~iaPq~r~sl~~~f~~~~~~~~-~kl~~~lk~LGf~ 57 (403)
++...+++||++ +.- ..+.+++. ..+..||+++||.
T Consensus 119 GRiLtas~SPs~---~iH--k~~ie~~v~~E~~~AL~RiG~~ 155 (156)
T 3brc_A 119 GRLLSAAMSPPH---VIH--SMEVREAVRSEMTHALERIGFK 155 (156)
T ss_dssp SCEEEEEEECCT---TTS--CCCHHHHHHHHHHHHHHTTTCC
T ss_pred CcEEeeccCchh---hhh--cccHHHHHHHHHHHHHHHhCcC
Confidence 467789999973 333 34565555 8899999999996
No 16
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=22.88 E-value=69 Score=28.80 Aligned_cols=73 Identities=16% Similarity=0.363 Sum_probs=50.5
Q ss_pred ccHHHHHHHHhCCC---eEEEEeC--ccchH-HHHHHhCCChHHH------HHHHHHHHHHcCCcEEEechhHHHHhHHH
Q 015642 5 QSLDEFLSNINKGK---AVIISLS--PQSRA-SLAEHFGISPLQV------FKKLTTFLKSLGVKSIFDTSCSRDLTLIE 72 (403)
Q Consensus 5 qs~~~~~~~l~~~k---~~Vv~ia--Pq~r~-sl~~~f~~~~~~~------~~kl~~~lk~LGf~~V~dt~~gadi~~~e 72 (403)
.+...++++++++. .+++.|| |..+. .+|..+|++.-.. ...+...|++++.|.|+=.+|+.=+.
T Consensus 20 snl~all~~~~~~~~~~~I~~Vis~~~~a~~l~~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dlivlagy~~IL~--- 96 (215)
T 3kcq_A 20 SNLEALAKAFSTEESSVVISCVISNNAEARGLLIAQSYGIPTFVVKRKPLDIEHISTVLREHDVDLVCLAGFMSILP--- 96 (215)
T ss_dssp HHHHHHHHHTCCC-CSEEEEEEEESCTTCTHHHHHHHTTCCEEECCBTTBCHHHHHHHHHHTTCSEEEESSCCSCCC---
T ss_pred HHHHHHHHHHHcCCCCcEEEEEEeCCcchHHHHHHHHcCCCEEEeCcccCChHHHHHHHHHhCCCEEEEeCCceEeC---
Confidence 34667888887764 4666666 43332 4688888764321 25788899999999999999988664
Q ss_pred HHHHHHHHHh
Q 015642 73 ACNEFIARYK 82 (403)
Q Consensus 73 ~~~E~~~~~~ 82 (403)
.+|+++++
T Consensus 97 --~~~l~~~~ 104 (215)
T 3kcq_A 97 --EKFVTDWH 104 (215)
T ss_dssp --HHHHHHTT
T ss_pred --HHHHhhcc
Confidence 47787653
No 17
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=20.04 E-value=1.9e+02 Score=22.76 Aligned_cols=44 Identities=16% Similarity=0.428 Sum_probs=26.6
Q ss_pred cHHHHHHHHhC---CCeEEEEeCccchHHHHHHhCCChHHHHHHHHHHHHHcCCcEE
Q 015642 6 SLDEFLSNINK---GKAVIISLSPQSRASLAEHFGISPLQVFKKLTTFLKSLGVKSI 59 (403)
Q Consensus 6 s~~~~~~~l~~---~k~~Vv~iaPq~r~sl~~~f~~~~~~~~~kl~~~lk~LGf~~V 59 (403)
....|++.|.. +|++.+ ++- +|...+.+...|...|+++|+..|
T Consensus 65 ~~~~fl~~l~~~l~~k~~~~-f~t---------~g~~~~~a~~~l~~~l~~~G~~~v 111 (138)
T 5nul_A 65 EFEPFIEEISTKISGKKVAL-FGS---------YGWGDGKWMRDFEERMNGYGCVVV 111 (138)
T ss_dssp THHHHHHHHGGGCTTCEEEE-EEE---------ESSSCSHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHhhcCCCEEEE-EEe---------cCCCCChHHHHHHHHHHHCCCEEE
Confidence 46777777753 444333 221 233323556788888888888765
Done!