Query 015643
Match_columns 403
No_of_seqs 257 out of 670
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 16:10:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 95.4 0.0037 1.3E-07 50.1 0.9 43 18-60 4-49 (101)
2 3ogl_Q JAZ1 incomplete degron 93.0 0.054 1.8E-06 34.0 2.2 18 345-362 4-21 (21)
3 3ogk_Q JAZ1 incomplete degron 92.0 0.046 1.6E-06 34.7 0.9 19 347-365 1-19 (22)
4 2did_A Tripartite motif protei 87.3 0.53 1.8E-05 33.7 3.6 45 15-66 6-51 (53)
5 2ffw_A Midline-1; B-BOX, ring 86.9 0.29 9.9E-06 38.5 2.2 44 16-59 29-75 (78)
6 2d8u_A Ubiquitin ligase TRIM63 80.9 0.94 3.2E-05 33.3 2.6 49 13-67 4-53 (64)
7 2yrg_A Tripartite motif-contai 76.6 1.7 5.7E-05 32.2 2.8 43 17-66 14-57 (59)
8 2yvr_A Transcription intermedi 75.3 1.8 6.3E-05 30.4 2.7 43 17-65 6-48 (50)
9 2fc7_A ZZZ3 protein; structure 72.7 8.5 0.00029 30.7 6.2 49 17-65 21-76 (82)
10 1fre_A Nuclear factor XNF7; zi 69.4 1.9 6.4E-05 29.2 1.5 32 18-50 4-36 (42)
11 3ddt_A E3 ubiquitin-protein li 68.5 3.1 0.0001 29.1 2.5 40 18-63 7-47 (48)
12 2e5r_A Dystrobrevin alpha; ZZ 67.9 6.5 0.00022 29.9 4.4 48 15-62 9-60 (63)
13 2dja_A Midline-2; tripartite m 67.4 2.6 8.9E-05 32.5 2.1 45 17-67 18-63 (84)
14 2jun_A Midline-1; B-BOX, TRIM, 64.5 3.1 0.00011 32.8 2.1 41 17-63 59-100 (101)
15 2csv_A Tripartite motif protei 60.3 3.5 0.00012 31.2 1.6 43 16-65 17-59 (72)
16 2egm_A Tripartite motif-contai 51.8 3.6 0.00012 30.1 0.4 33 16-49 17-50 (57)
17 4g92_A HAPB protein; transcrip 48.8 16 0.00056 28.5 3.6 27 364-390 36-63 (64)
18 2d8v_A Zinc finger FYVE domain 44.5 14 0.00046 29.2 2.6 49 16-66 7-56 (67)
19 1z60_A TFIIH basal transcripti 34.3 7.6 0.00026 29.6 -0.2 33 18-50 16-51 (59)
20 2dip_A Zinc finger SWIM domain 25.7 29 0.00099 28.6 1.8 29 18-46 32-64 (98)
21 1tot_A CREB-binding protein; z 23.3 21 0.00072 26.1 0.5 30 18-47 7-38 (52)
22 4hc9_A Trans-acting T-cell-spe 21.4 29 0.001 29.3 1.0 41 15-55 3-46 (115)
23 2z3q_B Interleukin-15 receptor 20.1 26 0.00089 29.8 0.4 14 87-100 34-47 (107)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.41 E-value=0.0037 Score=50.10 Aligned_cols=43 Identities=21% Similarity=0.411 Sum_probs=38.2
Q ss_pred CCccccCC---CceEEEecccccccccccccCCcCCCCCCCCCcee
Q 015643 18 RACDGCLR---KRARWYCVADDAFLCQGCDASVHSANQLASRHERV 60 (403)
Q Consensus 18 ~lCD~C~~---apA~vyC~aD~A~LC~~CDa~vHsAN~La~rH~Rv 60 (403)
..|++|.. .+|+.+|..+.++||..|...+|..+..+.+|..+
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence 46999984 68999999999999999999999888777888866
No 2
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=93.00 E-value=0.054 Score=33.98 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHhhccC.....
Q 015643 345 GGREARVSRYREKRRTRL..... 362 (403)
Q Consensus 345 ~~R~~~v~RYreKr~~R~..... 362 (403)
..|.++|+||.||||.|+
T Consensus 4 ~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 4 IARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred hhHHHHHHHHHHHhhccC.....
Confidence 579999999999999874
No 3
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=91.98 E-value=0.046 Score=34.66 Aligned_cols=19 Identities=47% Similarity=0.709 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhccCCCC
Q 015643 347 REARVSRYREKRRTRLFSK 365 (403)
Q Consensus 347 R~~~v~RYreKr~~R~f~K 365 (403)
|.++|+||.||||.|+..+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 6789999999999997654
No 4
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=87.30 E-value=0.53 Score=33.70 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=36.3
Q ss_pred CCCCCccccCCCceEEEeccccccccccccc-CCcCCCCCCCCCceeeecCCC
Q 015643 15 KTARACDGCLRKRARWYCVADDAFLCQGCDA-SVHSANQLASRHERVRLETAS 66 (403)
Q Consensus 15 R~~~lCD~C~~apA~vyC~aD~A~LC~~CDa-~vHsAN~La~rH~RvpL~~~~ 66 (403)
.....|..-. .+-.+||..|...+|..|-. .-|. .|..+||..+.
T Consensus 6 ~~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~ 51 (53)
T 2did_A 6 SGESLCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPLSGPS 51 (53)
T ss_dssp CSCCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEECCCTT
T ss_pred cCCCcChhhC-CeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHHHHh
Confidence 3455798887 77899999999999999986 5673 48888888754
No 5
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=86.92 E-value=0.29 Score=38.48 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=37.1
Q ss_pred CCCCccccCC---CceEEEecccccccccccccCCcCCCCCCCCCce
Q 015643 16 TARACDGCLR---KRARWYCVADDAFLCQGCDASVHSANQLASRHER 59 (403)
Q Consensus 16 ~~~lCD~C~~---apA~vyC~aD~A~LC~~CDa~vHsAN~La~rH~R 59 (403)
....|+.|.. .+|+-.|..+.++||..|=...|...+.+.+|.=
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 3568999975 6899999999999999998888987777778863
No 6
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=80.93 E-value=0.94 Score=33.29 Aligned_cols=49 Identities=18% Similarity=0.421 Sum_probs=38.3
Q ss_pred cCCCCCCccccCCCceEEEeccccccccccccc-CCcCCCCCCCCCceeeecCCCC
Q 015643 13 GGKTARACDGCLRKRARWYCVADDAFLCQGCDA-SVHSANQLASRHERVRLETASS 67 (403)
Q Consensus 13 s~R~~~lCD~C~~apA~vyC~aD~A~LC~~CDa-~vHsAN~La~rH~RvpL~~~~~ 67 (403)
.......|..-...+-.+||..|...+|..|-. .-|. .|.-+||..+..
T Consensus 4 ~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~ 53 (64)
T 2d8u_A 4 GSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQ 53 (64)
T ss_dssp CCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCS
T ss_pred CCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHH
Confidence 334556898886678899999999999999975 5774 388888877654
No 7
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.59 E-value=1.7 Score=32.15 Aligned_cols=43 Identities=19% Similarity=0.408 Sum_probs=34.5
Q ss_pred CCCccccCCCceEEEeccccccccccccc-CCcCCCCCCCCCceeeecCCC
Q 015643 17 ARACDGCLRKRARWYCVADDAFLCQGCDA-SVHSANQLASRHERVRLETAS 66 (403)
Q Consensus 17 ~~lCD~C~~apA~vyC~aD~A~LC~~CDa-~vHsAN~La~rH~RvpL~~~~ 66 (403)
.+.|..-. .+-.+||..|...+|..|-. .-|. .|..+||..+.
T Consensus 14 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~------~H~~~~l~ea~ 57 (59)
T 2yrg_A 14 VDHCARHG-EKLLLFCQEDGKVICWLCERSQEHR------GHHTFPTSGPS 57 (59)
T ss_dssp SSBCTTTC-CBCCEEETTTCSEECHHHHTSTTTT------TCCEEECCSSC
T ss_pred CccChhhC-ceeeeecCCCCcEEecccCCCCcCC------CCcEeeHHHHh
Confidence 35788877 57889999999999999986 5664 48888887754
No 8
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=75.29 E-value=1.8 Score=30.37 Aligned_cols=43 Identities=23% Similarity=0.476 Sum_probs=34.5
Q ss_pred CCCccccCCCceEEEecccccccccccccCCcCCCCCCCCCceeeecCC
Q 015643 17 ARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRLETA 65 (403)
Q Consensus 17 ~~lCD~C~~apA~vyC~aD~A~LC~~CDa~vHsAN~La~rH~RvpL~~~ 65 (403)
...|..-...+-.+||..|...+|..|-..-|. .|.-+||..+
T Consensus 6 ~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~ea 48 (50)
T 2yvr_A 6 TVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLEDA 48 (50)
T ss_dssp SCBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETTC-
T ss_pred CCcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHHHH
Confidence 456888856778999999999999999876664 4888888765
No 9
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=72.66 E-value=8.5 Score=30.71 Aligned_cols=49 Identities=20% Similarity=0.502 Sum_probs=35.4
Q ss_pred CCCccccCCCc---eEEEeccccc----ccccccccCCcCCCCCCCCCceeeecCC
Q 015643 17 ARACDGCLRKR---ARWYCVADDA----FLCQGCDASVHSANQLASRHERVRLETA 65 (403)
Q Consensus 17 ~~lCD~C~~ap---A~vyC~aD~A----~LC~~CDa~vHsAN~La~rH~RvpL~~~ 65 (403)
...||.|...| -+|.|..+.- -||+.|-...+..+.....|.=++|...
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~ 76 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRS 76 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCC
Confidence 45899999876 4699988865 5999998876544444456776666654
No 10
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=69.36 E-value=1.9 Score=29.25 Aligned_cols=32 Identities=25% Similarity=0.584 Sum_probs=25.8
Q ss_pred CCccccCCCceEEEeccccccccccccc-CCcCC
Q 015643 18 RACDGCLRKRARWYCVADDAFLCQGCDA-SVHSA 50 (403)
Q Consensus 18 ~lCD~C~~apA~vyC~aD~A~LC~~CDa-~vHsA 50 (403)
++|..-+ .+-.+||..|...+|..|-. .-|..
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~~ 36 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKHAS 36 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCTT
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCCCCCCC
Confidence 4677776 67889999999999999987 55643
No 11
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=68.46 E-value=3.1 Score=29.10 Aligned_cols=40 Identities=23% Similarity=0.485 Sum_probs=30.7
Q ss_pred CCccccCCCceEEEecccccccccccc-cCCcCCCCCCCCCceeeec
Q 015643 18 RACDGCLRKRARWYCVADDAFLCQGCD-ASVHSANQLASRHERVRLE 63 (403)
Q Consensus 18 ~lCD~C~~apA~vyC~aD~A~LC~~CD-a~vHsAN~La~rH~RvpL~ 63 (403)
..|..=...+-.+||..|...+|..|- ..-|.. |.-+||.
T Consensus 7 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~------H~~~~l~ 47 (48)
T 3ddt_A 7 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKA------CEVAPLQ 47 (48)
T ss_dssp CBCSSSTTSBCCEEETTTTEEECHHHHHHSTTTT------SCEEECC
T ss_pred CcCCCCCCccccEEcCCCCeeEcccccCCCcCCC------CcEEeCC
Confidence 456665546688999999999999996 556754 7777764
No 12
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.88 E-value=6.5 Score=29.85 Aligned_cols=48 Identities=21% Similarity=0.434 Sum_probs=32.1
Q ss_pred CCCCCccccCCCc---eEEEecccccc-cccccccCCcCCCCCCCCCceeee
Q 015643 15 KTARACDGCLRKR---ARWYCVADDAF-LCQGCDASVHSANQLASRHERVRL 62 (403)
Q Consensus 15 R~~~lCD~C~~ap---A~vyC~aD~A~-LC~~CDa~vHsAN~La~rH~RvpL 62 (403)
.+...||.|...| -++.|....-+ ||+.|-+.....+.....|.-+.+
T Consensus 9 ~H~~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~ 60 (63)
T 2e5r_A 9 FHPVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEY 60 (63)
T ss_dssp CSCSCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEE
T ss_pred eeCCCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEE
Confidence 3557899999876 67999887544 999997765433333334544433
No 13
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=67.43 E-value=2.6 Score=32.50 Aligned_cols=45 Identities=24% Similarity=0.538 Sum_probs=35.9
Q ss_pred CCCccccCCCceEEEeccccccccccccc-CCcCCCCCCCCCceeeecCCCC
Q 015643 17 ARACDGCLRKRARWYCVADDAFLCQGCDA-SVHSANQLASRHERVRLETASS 67 (403)
Q Consensus 17 ~~lCD~C~~apA~vyC~aD~A~LC~~CDa-~vHsAN~La~rH~RvpL~~~~~ 67 (403)
...|..-...+-.+||..|...+|..|-. .-|. .|.-+||..+..
T Consensus 18 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~~ 63 (84)
T 2dja_A 18 GITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDRFE 63 (84)
T ss_dssp CCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSSCC
T ss_pred CCcCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHHHHHH
Confidence 45788886678899999999999999987 6674 487788777654
No 14
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=64.49 E-value=3.1 Score=32.83 Aligned_cols=41 Identities=27% Similarity=0.582 Sum_probs=32.9
Q ss_pred CCCccccCCCceEEEeccccccccccccc-CCcCCCCCCCCCceeeec
Q 015643 17 ARACDGCLRKRARWYCVADDAFLCQGCDA-SVHSANQLASRHERVRLE 63 (403)
Q Consensus 17 ~~lCD~C~~apA~vyC~aD~A~LC~~CDa-~vHsAN~La~rH~RvpL~ 63 (403)
...|......+-.+||..|...+|..|.. .-|.. |.-++|.
T Consensus 59 ~~~C~~H~~e~l~~fC~~~~~~iC~~C~~~~~H~~------H~~~~l~ 100 (101)
T 2jun_A 59 GLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHRD------HQVAALS 100 (101)
T ss_dssp CCCCSSCSSSCCCEEETTTTEEECHHHHHHTTTSS------SCBCCCC
T ss_pred CCcCcCcCCCcceEECCCCCCccchhcCCCCCcCC------CCeecCC
Confidence 34788887778999999999999999986 67754 6666654
No 15
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=60.27 E-value=3.5 Score=31.16 Aligned_cols=43 Identities=30% Similarity=0.524 Sum_probs=34.4
Q ss_pred CCCCccccCCCceEEEecccccccccccccCCcCCCCCCCCCceeeecCC
Q 015643 16 TARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRLETA 65 (403)
Q Consensus 16 ~~~lCD~C~~apA~vyC~aD~A~LC~~CDa~vHsAN~La~rH~RvpL~~~ 65 (403)
....|..-. .+-.+||..|...+|..|-..-|. .|.-+||..+
T Consensus 17 ~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~------~H~~~~l~ea 59 (72)
T 2csv_A 17 EARKCPVHG-KTMELFCQTDQTCICYLCMFQEHK------NHSTVTVEEA 59 (72)
T ss_dssp SCCBCTTTC-CBCCEEESSSCCEECHHHHHTTTS------SSCEEEHHHH
T ss_pred ccCcCcccC-CceEEEeCCCCeEEccccCCCCCC------CCCEecHHHH
Confidence 345788885 788999999999999999876664 4888887654
No 16
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.83 E-value=3.6 Score=30.14 Aligned_cols=33 Identities=18% Similarity=0.523 Sum_probs=26.9
Q ss_pred CCCCccccCCCceEEEeccccccccccccc-CCcC
Q 015643 16 TARACDGCLRKRARWYCVADDAFLCQGCDA-SVHS 49 (403)
Q Consensus 16 ~~~lCD~C~~apA~vyC~aD~A~LC~~CDa-~vHs 49 (403)
....|..-+ .+-.+||..|...+|..|-. .-|.
T Consensus 17 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 17 DQGICPKHQ-EALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp TTSBCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred ccCcChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence 345798885 77999999999999999986 4553
No 17
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=48.84 E-value=16 Score=28.48 Aligned_cols=27 Identities=37% Similarity=0.490 Sum_probs=23.1
Q ss_pred CCcccchhhhhhcccCCC-CCccccccC
Q 015643 364 SKKIRYEVRKLNAEKRPR-MKGRFVKRT 390 (403)
Q Consensus 364 ~KkirY~~RK~~A~~RpR-vKGRFvk~~ 390 (403)
.|+.-|++|-+-|-+||| -.|||.+..
T Consensus 36 rk~YlhESRH~HAm~R~Rg~gGRFl~~~ 63 (64)
T 4g92_A 36 RKPYLHESRHNHAMRRPRGPGGRFLTAD 63 (64)
T ss_dssp CCSCSCHHHHHHHHHSCBCTTSCBCCCC
T ss_pred ccCcchhHHHHHHhcCCcCCCCccccCC
Confidence 456789999999999999 569998864
No 18
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=44.51 E-value=14 Score=29.15 Aligned_cols=49 Identities=18% Similarity=0.265 Sum_probs=40.1
Q ss_pred CCCCccccCCCceEEEeccc-ccccccccccCCcCCCCCCCCCceeeecCCC
Q 015643 16 TARACDGCLRKRARWYCVAD-DAFLCQGCDASVHSANQLASRHERVRLETAS 66 (403)
Q Consensus 16 ~~~lCD~C~~apA~vyC~aD-~A~LC~~CDa~vHsAN~La~rH~RvpL~~~~ 66 (403)
..+.|-+|..- |++.|..+ .--+|..|=...|. ..-.+.|+-++.....
T Consensus 7 e~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~~~ 56 (67)
T 2d8v_A 7 GLPWCCICNED-ATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHPRR 56 (67)
T ss_dssp CCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCCSS
T ss_pred CCCeeEEeCCC-CeEEecCCCCceehHHHHHHHcc-chhhhccceeeccCCC
Confidence 46789999965 99999987 55789999999995 4567899999885544
No 19
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=34.31 E-value=7.6 Score=29.56 Aligned_cols=33 Identities=30% Similarity=0.727 Sum_probs=26.8
Q ss_pred CCccccCCCce---EEEecccccccccccccCCcCC
Q 015643 18 RACDGCLRKRA---RWYCVADDAFLCQGCDASVHSA 50 (403)
Q Consensus 18 ~lCD~C~~apA---~vyC~aD~A~LC~~CDa~vHsA 50 (403)
+.|-.|+..-. +..|......+|.+||.-||..
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 45888887542 4669999999999999999964
No 20
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=25.68 E-value=29 Score=28.56 Aligned_cols=29 Identities=28% Similarity=0.561 Sum_probs=22.9
Q ss_pred CCccccCCCc---eEEEeccccc-ccccccccC
Q 015643 18 RACDGCLRKR---ARWYCVADDA-FLCQGCDAS 46 (403)
Q Consensus 18 ~lCD~C~~ap---A~vyC~aD~A-~LC~~CDa~ 46 (403)
..||.|...| ..+.|..+.- -||+.|-+.
T Consensus 32 v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~ 64 (98)
T 2dip_A 32 IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDS 64 (98)
T ss_dssp CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHT
T ss_pred CCCcCCCCCCcccCeEECCCCCCccHHHHHHcc
Confidence 6899999865 6799987744 599999554
No 21
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=23.28 E-value=21 Score=26.10 Aligned_cols=30 Identities=27% Similarity=0.867 Sum_probs=23.7
Q ss_pred CCccccCCC-ceEEEecccccc-cccccccCC
Q 015643 18 RACDGCLRK-RARWYCVADDAF-LCQGCDASV 47 (403)
Q Consensus 18 ~lCD~C~~a-pA~vyC~aD~A~-LC~~CDa~v 47 (403)
..|+.|.+. ...|.|....-+ ||..|=...
T Consensus 7 ~~Cd~C~~~ig~R~~C~~C~dyDLC~~C~~~~ 38 (52)
T 1tot_A 7 YTCNECKHHVETRWHCTVCEDYDLCINCYNTK 38 (52)
T ss_dssp EEETTTTEEESSEEEESSSSSCEECHHHHHHH
T ss_pred EECCCCCCCCcceEEcCCCCCchhHHHHHhCC
Confidence 469999975 367999998777 999996653
No 22
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=21.36 E-value=29 Score=29.26 Aligned_cols=41 Identities=17% Similarity=0.442 Sum_probs=27.6
Q ss_pred CCCCCccccCCCceEEEecccc-cccccccc--cCCcCCCCCCC
Q 015643 15 KTARACDGCLRKRARWYCVADD-AFLCQGCD--ASVHSANQLAS 55 (403)
Q Consensus 15 R~~~lCD~C~~apA~vyC~aD~-A~LC~~CD--a~vHsAN~La~ 55 (403)
...+.|..|+....-+|=+.+. -.||.+|. ...|+.|....
T Consensus 3 ~~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~ 46 (115)
T 4hc9_A 3 HMGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLI 46 (115)
T ss_dssp ---CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCS
T ss_pred CCCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccc
Confidence 3467899999776665555554 48999999 56677766543
No 23
>2z3q_B Interleukin-15 receptor alpha chain; protein-protein complex, cytokine/cytokine receptor complex; 1.85A {Homo sapiens} SCOP: g.18.1.1 PDB: 2z3r_B 2ers_A
Probab=20.07 E-value=26 Score=29.78 Aligned_cols=14 Identities=43% Similarity=0.577 Sum_probs=11.5
Q ss_pred cccCccCCCCCCCC
Q 015643 87 WHQGFTRKARTPRH 100 (403)
Q Consensus 87 W~~Gf~RKaRTPR~ 100 (403)
=.+||+||++|+=-
T Consensus 34 C~~Gykrkagtsal 47 (107)
T 2z3q_B 34 CNSGFKRKAGTSSL 47 (107)
T ss_dssp ECTTEEECTTCCCE
T ss_pred cchhhhhhcCCCCc
Confidence 35899999999863
Done!