Query 015643
Match_columns 403
No_of_seqs 257 out of 670
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 16:10:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015643.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015643hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2djaa1 g.43.1.1 (A:8-78) Midl 73.1 1.2 8.9E-05 31.9 3.2 45 17-67 11-56 (71)
2 d2fc7a1 g.44.1.6 (A:8-76) Zinc 65.2 4.7 0.00034 29.3 5.0 46 18-63 15-67 (69)
3 d2d8ua1 g.43.1.1 (A:8-58) Ubiq 58.7 2.3 0.00017 29.0 2.1 43 18-66 2-45 (51)
4 d2dida1 g.43.1.1 (A:8-47) Trip 56.7 3.1 0.00023 27.3 2.4 37 19-62 3-40 (40)
5 d2csva1 g.43.1.1 (A:8-66) Trip 55.7 3.4 0.00025 28.9 2.6 47 12-65 6-52 (59)
6 d1frea_ g.43.1.1 (A:) Nuclear 52.5 2.5 0.00018 27.6 1.4 36 20-62 3-39 (39)
7 d2dq5a1 g.43.1.1 (A:168-214) M 40.0 11 0.00078 25.1 3.1 42 16-63 4-46 (47)
8 d2d8va1 g.43.1.1 (A:8-61) Zinc 32.2 13 0.00096 26.3 2.5 46 18-65 2-48 (54)
9 d1z60a1 g.49.1.2 (A:328-386) T 28.8 8.5 0.00062 27.8 1.0 34 17-50 15-51 (59)
10 d1v5na_ g.49.1.3 (A:) Pdi-like 19.6 15 0.0011 27.7 0.9 27 17-49 47-73 (89)
No 1
>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=73.12 E-value=1.2 Score=31.92 Aligned_cols=45 Identities=24% Similarity=0.538 Sum_probs=35.5
Q ss_pred CCCccccCCCceEEEeccccccccccccc-CCcCCCCCCCCCceeeecCCCC
Q 015643 17 ARACDGCLRKRARWYCVADDAFLCQGCDA-SVHSANQLASRHERVRLETASS 67 (403)
Q Consensus 17 ~~lCD~C~~apA~vyC~aD~A~LC~~CDa-~vHsAN~La~rH~RvpL~~~~~ 67 (403)
...|..-...+..+||..|...+|..|-. ..|. .|.-++|..+..
T Consensus 11 ~~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~Hk------~H~~~~i~~a~~ 56 (71)
T d2djaa1 11 GITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDRFE 56 (71)
T ss_dssp CCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSSCC
T ss_pred CCcCcccCCccceeEcCCCCceeccccccCCCCC------CCcCcCHHHHHH
Confidence 34699987788999999999999999954 4673 388888776653
No 2
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.17 E-value=4.7 Score=29.29 Aligned_cols=46 Identities=22% Similarity=0.522 Sum_probs=32.9
Q ss_pred CCccccCCCc---eEEEeccc----ccccccccccCCcCCCCCCCCCceeeec
Q 015643 18 RACDGCLRKR---ARWYCVAD----DAFLCQGCDASVHSANQLASRHERVRLE 63 (403)
Q Consensus 18 ~lCD~C~~ap---A~vyC~aD----~A~LC~~CDa~vHsAN~La~rH~RvpL~ 63 (403)
..||.|+..| ..|.|..+ +--||..|=...+....-...|.=.||.
T Consensus 15 ~~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~~~~~~H~~~H~~~~I~ 67 (69)
T d2fc7a1 15 FKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIY 67 (69)
T ss_dssp CCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEEC
T ss_pred eEcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCcccCCCCCCCCCEEEee
Confidence 4799999987 68999877 6789999966554433334557666664
No 3
>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.70 E-value=2.3 Score=29.02 Aligned_cols=43 Identities=19% Similarity=0.419 Sum_probs=34.1
Q ss_pred CCccccCCCceEEEecccccccccccc-cCCcCCCCCCCCCceeeecCCC
Q 015643 18 RACDGCLRKRARWYCVADDAFLCQGCD-ASVHSANQLASRHERVRLETAS 66 (403)
Q Consensus 18 ~lCD~C~~apA~vyC~aD~A~LC~~CD-a~vHsAN~La~rH~RvpL~~~~ 66 (403)
++|..=...+-.+||..|...+|..|- ...|. .|.-++|..+.
T Consensus 2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~Hk------~H~v~~l~~a~ 45 (51)
T d2d8ua1 2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVF 45 (51)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCC
T ss_pred CCCcccCcCcceEEcCCCCceECccccCcCCcC------cCcCcCHHHHH
Confidence 567777777899999999999999995 45673 38888877654
No 4
>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.68 E-value=3.1 Score=27.28 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=28.0
Q ss_pred CccccCCCceEEEeccccccccccccc-CCcCCCCCCCCCceeee
Q 015643 19 ACDGCLRKRARWYCVADDAFLCQGCDA-SVHSANQLASRHERVRL 62 (403)
Q Consensus 19 lCD~C~~apA~vyC~aD~A~LC~~CDa-~vHsAN~La~rH~RvpL 62 (403)
+|..=+ .+=.+||..|...+|..|-. ..|.. |.-+||
T Consensus 3 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~~------H~v~pi 40 (40)
T d2dida1 3 LCPQHH-EALSLFCYEDQEAVCLICAISHTHRA------HTVVPL 40 (40)
T ss_dssp BCTTTC-CBCCEEESSSCSEECHHHHTSSTTTT------SCEEEC
T ss_pred cchhhC-ccceEEcccCCcEeeccCcCCCCcCC------CcEecC
Confidence 455554 56789999999999999965 46743 777765
No 5
>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.73 E-value=3.4 Score=28.92 Aligned_cols=47 Identities=28% Similarity=0.468 Sum_probs=36.1
Q ss_pred ccCCCCCCccccCCCceEEEecccccccccccccCCcCCCCCCCCCceeeecCC
Q 015643 12 MGGKTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRLETA 65 (403)
Q Consensus 12 ls~R~~~lCD~C~~apA~vyC~aD~A~LC~~CDa~vHsAN~La~rH~RvpL~~~ 65 (403)
+.....+.|..-+ .+-.+||..|...+|..|-..-|. .|.-++|..+
T Consensus 6 ~~~~~~~~C~~H~-e~l~lyC~~c~~~iC~~C~~~~H~------~H~~~~l~~a 52 (59)
T d2csva1 6 IRDFEARKCPVHG-KTMELFCQTDQTCICYLCMFQEHK------NHSTVTVEEA 52 (59)
T ss_dssp SSSSSCCBCTTTC-CBCCEEESSSCCEECHHHHHTTTS------SSCEEEHHHH
T ss_pred chhhhhCchhhhC-CccceECCCCCceECcccCcccCC------CCCeeCHHHH
Confidence 3334456898886 678999999999999999777774 3888887543
No 6
>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=52.46 E-value=2.5 Score=27.65 Aligned_cols=36 Identities=25% Similarity=0.588 Sum_probs=26.0
Q ss_pred ccccCCCceEEEeccccccccccccc-CCcCCCCCCCCCceeee
Q 015643 20 CDGCLRKRARWYCVADDAFLCQGCDA-SVHSANQLASRHERVRL 62 (403)
Q Consensus 20 CD~C~~apA~vyC~aD~A~LC~~CDa-~vHsAN~La~rH~RvpL 62 (403)
|..=+ .+-.+||..|...+|..|-. ..|.. |.-+||
T Consensus 3 C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~~------H~v~pi 39 (39)
T d1frea_ 3 CSEHD-ERLKLYCKDDGTLSCVICRDSLKHAS------HNFLPI 39 (39)
T ss_dssp CCSSC-SSCCCCCCSSSSSSCCTTSSCSSCTT------CCCCCC
T ss_pred CcccC-cceeEEcccCCcEeeccCcCCCCcCC------CcEeeC
Confidence 55554 56789999999999999954 45744 655554
No 7
>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.99 E-value=11 Score=25.13 Aligned_cols=42 Identities=26% Similarity=0.577 Sum_probs=31.6
Q ss_pred CCCCccccCCCceEEEecccccccccccc-cCCcCCCCCCCCCceeeec
Q 015643 16 TARACDGCLRKRARWYCVADDAFLCQGCD-ASVHSANQLASRHERVRLE 63 (403)
Q Consensus 16 ~~~lCD~C~~apA~vyC~aD~A~LC~~CD-a~vHsAN~La~rH~RvpL~ 63 (403)
....|..=...+-.+||..+...+|..|= ...|. .|.-.+|.
T Consensus 4 ~~~~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H~------~H~~~~l~ 46 (47)
T d2dq5a1 4 RGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHR------DHQVAALS 46 (47)
T ss_dssp CCCBCSSCTTSBEEEEETTTTEEEEHHHHHTSSTT------SSCCCCSC
T ss_pred cCccchhhCCCcceEEcCCCCccCCccCcCcCCcC------CCeEeeCC
Confidence 34568877778899999999999999994 34673 36665553
No 8
>d2d8va1 g.43.1.1 (A:8-61) Zinc finger FYVE domain-containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.25 E-value=13 Score=26.34 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=36.6
Q ss_pred CCccccCCCceEEEeccccc-ccccccccCCcCCCCCCCCCceeeecCC
Q 015643 18 RACDGCLRKRARWYCVADDA-FLCQGCDASVHSANQLASRHERVRLETA 65 (403)
Q Consensus 18 ~lCD~C~~apA~vyC~aD~A-~LC~~CDa~vHsAN~La~rH~RvpL~~~ 65 (403)
|-|-+|. .-|++.|..+.. -.|..|=...| -+.-.+.|+-++....
T Consensus 2 PWC~ICn-eDA~lrC~gCdgdLyC~rC~rE~H-dd~e~~~H~~~~y~~~ 48 (54)
T d2d8va1 2 PWCCICN-EDATLRCAGCDGDLYCARCFREGH-DNFDLKEHQTSPYHPR 48 (54)
T ss_dssp SSCTTTC-SCCCEEETTTTSEEECSSHHHHHT-TTSSTTTCCEECCCCS
T ss_pred CEeEEec-CCCceEecCCCCceehHHHHHHhc-cccccccceecccCCC
Confidence 6799999 569999987654 56999999999 4556788988887654
No 9
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.78 E-value=8.5 Score=27.78 Aligned_cols=34 Identities=29% Similarity=0.738 Sum_probs=27.2
Q ss_pred CCCccccCCC---ceEEEecccccccccccccCCcCC
Q 015643 17 ARACDGCLRK---RARWYCVADDAFLCQGCDASVHSA 50 (403)
Q Consensus 17 ~~lCD~C~~a---pA~vyC~aD~A~LC~~CDa~vHsA 50 (403)
.+.|-.|+.. .....|....-.+|..||.-+|..
T Consensus 15 ~~~C~gC~~~l~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T d1z60a1 15 ERFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp CCEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred CCCccCCCCcCCCCceEECcCCCCccccccchhhhhh
Confidence 4568888833 445669999999999999999964
No 10
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=19.57 E-value=15 Score=27.73 Aligned_cols=27 Identities=26% Similarity=0.668 Sum_probs=20.1
Q ss_pred CCCccccCCCceEEEecccccccccccccCCcC
Q 015643 17 ARACDGCLRKRARWYCVADDAFLCQGCDASVHS 49 (403)
Q Consensus 17 ~~lCD~C~~apA~vyC~aD~A~LC~~CDa~vHs 49 (403)
...|+.|...-. .-.+.|..||..+|-
T Consensus 47 ~~~C~~C~~~~~------g~~Y~C~~C~f~LH~ 73 (89)
T d1v5na_ 47 VYTCDKCEEEGT------IWSYHCDECDFDLHA 73 (89)
T ss_dssp SCCCTTTSCCCC------SCEEECTTTCCCCCH
T ss_pred CCEeCCCCCCcC------CcEeEeccCCCEecH
Confidence 457999997533 334889999999985
Done!