BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015646
(403 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/410 (45%), Positives = 264/410 (64%), Gaps = 12/410 (2%)
Query: 3 NLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVXXXXXXXXXXXXNM 62
N+HS+ +D+ ++TAWV+ GATLGEVYY I+EK++ FP G CPTV +
Sbjct: 107 NMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGAL 166
Query: 63 MRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPE 122
MR YGL DNI+DA LV+V G++LDRKSMGEDLFWAIRGGGG +FG++ A++IKLV VP
Sbjct: 167 MRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPS 226
Query: 123 TVTVFQVRKTLE-QNATEIVYRWQQVASKQLPDDLFVRLIL--DVVNGTKSGTKTVRASF 179
T+F V+K +E ++ +WQ +A K D + + + ++ + TV F
Sbjct: 227 KSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYF 286
Query: 180 LSLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWT---NFQIDD-PLNILLNR 235
S+F G + L+ +MN+SFPELG+ ++DC E SWI + +F++ NF + ILL+R
Sbjct: 287 SSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDR 346
Query: 236 TPPTLTFLKRKSDYVKQPIPKNGLEFIWKRMIELE--TPQMIFNPYGGKMAEIPSTATPF 293
+ T K DYVK+PIP+ + I +++ E + + PYGG M EI +A PF
Sbjct: 347 SAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPF 406
Query: 294 PHRAGNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDLG- 352
PHRAG ++++ Y +W + + +++N R +Y + TP+VS+NPR A+ NYRD+DLG
Sbjct: 407 PHRAGIMYELWYTASWEK--QEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGK 464
Query: 353 INHNGKASFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIPVLP 402
NH ++ +A+ +G KYF NFNRLVK+KTKVDP NFFRNEQSIP LP
Sbjct: 465 TNHASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 359 bits (921), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 188/403 (46%), Positives = 254/403 (63%), Gaps = 16/403 (3%)
Query: 1 MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVXXXXXXXXXXXX 60
M + +V +D + TAWV +GA LG++YY I++ S GFPAGVC T+
Sbjct: 108 MNKMRAVSIDGKAATAWVDSGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFG 167
Query: 61 NMMRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRV 120
++RKYG DN++DAK+VD GRLLDRK+MGED FWAIRGGGG SFG+V ++++KL+ V
Sbjct: 168 MLLRKYGTAADNVIDAKVVDAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPV 227
Query: 121 PETVTVFQVRKTLEQNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASFL 180
P VTVFQV K +++ A ++V +WQ VA LPDDL +R I+ + G A F
Sbjct: 228 PPKVTVFQVHKGIKEGAIDLVTKWQTVAP-ALPDDLMIR-IMAMGQG---------AMFE 276
Query: 181 SLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPLNILLNRTPPTL 240
+L+LG L+ +M FPELG+ + C E +WI SV + + LLNRT
Sbjct: 277 ALYLGTCKDLVLLMTARFPELGMNATHCKEMTWIESVPY-IPMGPKGTVRDLLNRTSNIK 335
Query: 241 TFLKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPHRAGNL 300
F K KSDYV +PIPK+ E I+ +++ MI +PYGG +A +P +ATPFP R+G L
Sbjct: 336 AFGKYKSDYVLEPIPKSDWEKIFTWLVKPGAGVMIMDPYGGGIASVPESATPFPRRSGVL 395
Query: 301 WKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDLGINH--NGK 358
+ IQYV W G AA TR +Y +MTP+VSKNPRQA+ NYRD+DLG+N
Sbjct: 396 FNIQYVVYWF--GEGAAALPTQWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNV 453
Query: 359 ASFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIPVL 401
+++ K +G KYF GNF RL + K K+DP ++FRNEQSIP L
Sbjct: 454 STYASGKVWGEKYFKGNFERLARTKGKIDPEDYFRNEQSIPPL 496
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 358 bits (919), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 188/405 (46%), Positives = 257/405 (63%), Gaps = 24/405 (5%)
Query: 4 LHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVXXXXXXXXXXXXNMM 63
+ +V VD + TAWV +GA LGE+YY I + S T FPAGVCPT+ ++
Sbjct: 109 MRAVWVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLL 168
Query: 64 RKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPET 123
RKYG+ +N++D KLVD +G+L D+KSMG+D FWA+RGGGG SFG+V+A+++KL+ VP T
Sbjct: 169 RKYGIAAENVIDVKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPT 228
Query: 124 VTVFQVRKTLEQNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASFLSLF 183
VT+F++ KT+ + A +I+ +WQ VA QLP DL +R+I + +A+F +++
Sbjct: 229 VTIFKISKTVSEGAVDIINKWQVVAP-QLPADLMIRII----------AQGPKATFEAMY 277
Query: 184 LGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPLNILLNRTPPTLTFL 243
LG L +M+ FPELG+ S C E SWI+S+ F D + LLNR F
Sbjct: 278 LGTCKTLTPLMSSKFPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFA 337
Query: 244 KRKSDYVKQPIPKNGLEFIWKRMIE--LETPQ---MIFNPYGGKMAEIPSTATPFPHRAG 298
+ KSDYV QP PK +W++++ L P MIF+PYG ++ P +ATPFPHR G
Sbjct: 338 EYKSDYVYQPFPKT----VWEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKG 393
Query: 299 NLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDLGINH--N 356
L+ IQYV W PG AA L+ ++ +Y YM P+VSKNPRQA+ NYRDIDLG N N
Sbjct: 394 VLFNIQYVNYWFAPGAAAAP--LSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVN 451
Query: 357 GKASFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIPVL 401
+++ K +G KYF GNF RL K KVDP ++FRNEQSIP L
Sbjct: 452 DVSTYASGKVWGQKYFKGNFERLAITKGKVDPTDYFRNEQSIPPL 496
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 285 bits (729), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 165/409 (40%), Positives = 237/409 (57%), Gaps = 23/409 (5%)
Query: 1 MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVXXXXXXXXXXXX 60
+ NL+ V +D+E+ETAWV++G+TLGE+YY I+E S GF AG CPTV
Sbjct: 103 LMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGAISGGGFG 162
Query: 61 NMMRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRV 120
M RKYGL DN+VDA L+D +G +LDR++MGED+FWAIRGGGG +G + A++IKL+ V
Sbjct: 163 MMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPV 222
Query: 121 PETVTVFQVRKTLE-QNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASF 179
PE VTVF+V K + AT ++++WQ VA ++L +D L V+ G K V +
Sbjct: 223 PEKVTVFRVTKNVAIDEATSLLHKWQFVA-EELEED----FTLSVLGGADE--KQVWLTM 275
Query: 180 LSLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPLNILLNRTPPT 239
L G S + FPELGL + D +E SW S + + LN NR
Sbjct: 276 LGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN---NR---F 329
Query: 240 LTF----LKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPH 295
L F K K D K+P+P + +R+ + + N +GG+M++I S TPFPH
Sbjct: 330 LKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPH 389
Query: 296 RAGNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDL-GIN 354
R+G ++Y+ WN+ +L+ K+Y +M PFVSKNPR + N+ D+DL GI+
Sbjct: 390 RSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGID 449
Query: 355 HNGKA----SFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIP 399
K + E ++++G YFL N+ RL++ KT +DP N F + QSIP
Sbjct: 450 WGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 498
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 285 bits (729), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 165/409 (40%), Positives = 237/409 (57%), Gaps = 23/409 (5%)
Query: 1 MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVXXXXXXXXXXXX 60
+ NL+ V +D+E+ETAWV++G+TLGE+YY I+E S GF AG CPTV
Sbjct: 103 LMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFG 162
Query: 61 NMMRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRV 120
M RKYGL DN+VDA L+D +G +LDR++MGED+FWAIRGGGG +G + A++IKL+ V
Sbjct: 163 MMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPV 222
Query: 121 PETVTVFQVRKTLE-QNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASF 179
PE VTVF+V K + AT ++++WQ VA ++L +D L V+ G K V +
Sbjct: 223 PEKVTVFRVTKNVAIDEATSLLHKWQFVA-EELEED----FTLSVLGGADE--KQVWLTM 275
Query: 180 LSLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPLNILLNRTPPT 239
L G S + FPELGL + D +E SW S + + LN NR
Sbjct: 276 LGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN---NR---F 329
Query: 240 LTF----LKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPH 295
L F K K D K+P+P + +R+ + + N +GG+M++I S TPFPH
Sbjct: 330 LKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPH 389
Query: 296 RAGNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDL-GIN 354
R+G ++Y+ WN+ +L+ K+Y +M PFVSKNPR + N+ D+DL GI+
Sbjct: 390 RSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGID 449
Query: 355 HNGKA----SFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIP 399
K + E ++++G YFL N+ RL++ KT +DP N F + QSIP
Sbjct: 450 WGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 498
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 285 bits (728), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 165/409 (40%), Positives = 237/409 (57%), Gaps = 23/409 (5%)
Query: 1 MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVXXXXXXXXXXXX 60
+ NL+ V +D+E+ETAWV++G+TLGE+YY I+E S GF AG CPTV
Sbjct: 97 LMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFG 156
Query: 61 NMMRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRV 120
M RKYGL DN+VDA L+D +G +LDR++MGED+FWAIRGGGG +G + A++IKL+ V
Sbjct: 157 MMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPV 216
Query: 121 PETVTVFQVRKTLE-QNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASF 179
PE VTVF+V K + AT ++++WQ VA ++L +D L V+ G K V +
Sbjct: 217 PEKVTVFRVTKNVAIDEATSLLHKWQFVA-EELEED----FTLSVLGGADE--KQVWLTM 269
Query: 180 LSLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPLNILLNRTPPT 239
L G S + FPELGL + D +E SW S + + LN NR
Sbjct: 270 LGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN---NR---F 323
Query: 240 LTF----LKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPH 295
L F K K D K+P+P + +R+ + + N +GG+M++I S TPFPH
Sbjct: 324 LKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPH 383
Query: 296 RAGNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDL-GIN 354
R+G ++Y+ WN+ +L+ K+Y +M PFVSKNPR + N+ D+DL GI+
Sbjct: 384 RSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGID 443
Query: 355 HNGKA----SFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIP 399
K + E ++++G YFL N+ RL++ KT +DP N F + QSIP
Sbjct: 444 WGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 492
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 285 bits (728), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 165/409 (40%), Positives = 237/409 (57%), Gaps = 23/409 (5%)
Query: 1 MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVXXXXXXXXXXXX 60
+ NL+ V +D+E+ETAWV++G+TLGE+YY I+E S GF AG CPTV
Sbjct: 100 LMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFG 159
Query: 61 NMMRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRV 120
M RKYGL DN+VDA L+D +G +LDR++MGED+FWAIRGGGG +G + A++IKL+ V
Sbjct: 160 MMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPV 219
Query: 121 PETVTVFQVRKTLE-QNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASF 179
PE VTVF+V K + AT ++++WQ VA ++L +D L V+ G K V +
Sbjct: 220 PEKVTVFRVTKNVAIDEATSLLHKWQFVA-EELEED----FTLSVLGGADE--KQVWLTM 272
Query: 180 LSLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPLNILLNRTPPT 239
L G S + FPELGL + D +E SW S + + LN NR
Sbjct: 273 LGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN---NR---F 326
Query: 240 LTF----LKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPH 295
L F K K D K+P+P + +R+ + + N +GG+M++I S TPFPH
Sbjct: 327 LKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPH 386
Query: 296 RAGNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDL-GIN 354
R+G ++Y+ WN+ +L+ K+Y +M PFVSKNPR + N+ D+DL GI+
Sbjct: 387 RSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGID 446
Query: 355 HNGKA----SFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIP 399
K + E ++++G YFL N+ RL++ KT +DP N F + QSIP
Sbjct: 447 WGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 495
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 285 bits (728), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 165/409 (40%), Positives = 237/409 (57%), Gaps = 23/409 (5%)
Query: 1 MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVXXXXXXXXXXXX 60
+ NL+ V +D+E+ETAWV++G+TLGE+YY I+E S GF AG CPTV
Sbjct: 122 LMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFG 181
Query: 61 NMMRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRV 120
M RKYGL DN+VDA L+D +G +LDR++MGED+FWAIRGGGG +G + A++IKL+ V
Sbjct: 182 MMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPV 241
Query: 121 PETVTVFQVRKTLE-QNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASF 179
PE VTVF+V K + AT ++++WQ VA ++L +D L V+ G K V +
Sbjct: 242 PEKVTVFRVTKNVAIDEATSLLHKWQFVA-EELEED----FTLSVLGGADE--KQVWLTM 294
Query: 180 LSLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPLNILLNRTPPT 239
L G S + FPELGL + D +E SW S + + LN NR
Sbjct: 295 LGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN---NR---F 348
Query: 240 LTF----LKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPH 295
L F K K D K+P+P + +R+ + + N +GG+M++I S TPFPH
Sbjct: 349 LKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPH 408
Query: 296 RAGNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDL-GIN 354
R+G ++Y+ WN+ +L+ K+Y +M PFVSKNPR + N+ D+DL GI+
Sbjct: 409 RSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGID 468
Query: 355 HNGKA----SFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIP 399
K + E ++++G YFL N+ RL++ KT +DP N F + QSIP
Sbjct: 469 WGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 517
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 281 bits (718), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 164/409 (40%), Positives = 236/409 (57%), Gaps = 23/409 (5%)
Query: 1 MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVXXXXXXXXXXXX 60
+ NL+ V +D+E+ETAWV++G+TLGE+YY I+E S GF AG PTV
Sbjct: 97 LMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFG 156
Query: 61 NMMRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRV 120
M RKYGL DN+VDA L+D +G +LDR++MGED+FWAIRGGGG +G + A++IKL+ V
Sbjct: 157 MMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPV 216
Query: 121 PETVTVFQVRKTLE-QNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASF 179
PE VTVF+V K + AT ++++WQ VA ++L +D L V+ G K V +
Sbjct: 217 PEKVTVFRVTKNVAIDEATSLLHKWQFVA-EELEED----FTLSVLGGADE--KQVWLTM 269
Query: 180 LSLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPLNILLNRTPPT 239
L G S + FPELGL + D +E SW S + + LN NR
Sbjct: 270 LGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN---NR---F 323
Query: 240 LTF----LKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPH 295
L F K K D K+P+P + +R+ + + N +GG+M++I S TPFPH
Sbjct: 324 LKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPH 383
Query: 296 RAGNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDL-GIN 354
R+G ++Y+ WN+ +L+ K+Y +M PFVSKNPR + N+ D+DL GI+
Sbjct: 384 RSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGID 443
Query: 355 HNGKA----SFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIP 399
K + E ++++G YFL N+ RL++ KT +DP N F + QSIP
Sbjct: 444 WGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 492
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 280 bits (717), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 164/409 (40%), Positives = 236/409 (57%), Gaps = 23/409 (5%)
Query: 1 MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVXXXXXXXXXXXX 60
+ NL+ V +D+E+ETAWV++G+TLGE+YY I+E S GF AG PTV
Sbjct: 97 LMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFG 156
Query: 61 NMMRKYGLTVDNIVDAKLVDVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRV 120
M RKYGL DN+VDA L+D +G +LDR++MGED+FWAIRGGGG +G + A++IKL+ V
Sbjct: 157 MMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPV 216
Query: 121 PETVTVFQVRKTLE-QNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASF 179
PE VTVF+V K + AT ++++WQ VA ++L +D L V+ G K V +
Sbjct: 217 PEKVTVFRVTKNVAIDEATSLLHKWQFVA-EELEED----FTLSVLGGADE--KQVWLTM 269
Query: 180 LSLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPLNILLNRTPPT 239
L G S + FPELGL + D +E SW S + + LN NR
Sbjct: 270 LGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN---NR---F 323
Query: 240 LTF----LKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPH 295
L F K K D K+P+P + +R+ + + N +GG+M++I S TPFPH
Sbjct: 324 LKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPH 383
Query: 296 RAGNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDL-GIN 354
R+G ++Y+ WN+ +L+ K+Y +M PFVSKNPR + N+ D+DL GI+
Sbjct: 384 RSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGID 443
Query: 355 HNGKA----SFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIP 399
K + E ++++G YFL N+ RL++ KT +DP N F + QSIP
Sbjct: 444 WGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 492
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 106/407 (26%), Positives = 169/407 (41%), Gaps = 38/407 (9%)
Query: 18 VQTGATLGEVYYRISEKSKTHGFPAGVCPTVXXXXXXXXXXXXNMMRKYGLTVDNI--VD 75
V+ GATLGE Y R PAGVCP V + R+ G+ D++ V+
Sbjct: 123 VEPGATLGETY-RALYLDWGVTIPAGVCPQVGVGGHVLGGGYGPLSRRDGVVADHLYAVE 181
Query: 76 AKLVDVSGRL--LDRKSMGED----LFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQV 129
+VD SGR + S +D L+WA GGGG +FG+V Y + T +
Sbjct: 182 VVVVDASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFRTPGATGTDPSQLL 241
Query: 130 RKTLEQNATEIVYRWQQVASKQLPDDLFVRLILD--VVNGTKSGTKTVRASFLSLFLGDS 187
K IV W A L ++ F R+I + + + S T AS S+F +S
Sbjct: 242 PKAPTSTLRHIV-TWDWSA---LTEEAFTRIIDNHGAWHQSNSAAGTPYASMHSVFYLNS 297
Query: 188 NRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQ------IDDPLNILLNRTPPTLT 241
I+ + + GL ++ + ++ +V T + + L L T
Sbjct: 298 RAAGQILLDIQIDGGLDGAEALLNDFVAAVNEGTGVEPAVQRSTEPWLRATLANKFDTGG 357
Query: 242 F--LKRKSDYVKQPIPKNGLEFIWKRMIELET--PQMIFNPYGGKMAEIPSTATPFPHRA 297
F K K Y+++P +++ + ++ YGGK+ +P TAT R
Sbjct: 358 FDRTKSKGAYLRKPWTAAQAATLYRHLSADSQVWGEVSLYSYGGKVNSVPETATATAQR- 416
Query: 298 GNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYM------TPFVSKNPRQAFFNYRDIDL 351
++ K+ W +P D AN L R++Y + P F NY D+DL
Sbjct: 417 DSIIKVWMSATWMDPAHDDAN--LAWIREIYREIFATTGGVPVPDDRTEGTFINYPDVDL 474
Query: 352 GINHNGKASFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSI 398
++ S + Y+ GN+ RL K+K + DP + FR+ S+
Sbjct: 475 -VDERWNTS---GVPWYTLYYKGNYPRLQKVKARWDPRDVFRHALSV 517
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 102/432 (23%), Positives = 164/432 (37%), Gaps = 79/432 (18%)
Query: 4 LHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVXXXXXXXXXXXXNMM 63
++ V VD + A +Q GA LG + ++ G CP V
Sbjct: 97 MYRVSVD-DNNVATIQGGARLGYTALELLDQGN-RALSHGTCPAVGVGGHVLGGGYGFAT 154
Query: 64 RKYGLTVDNIVDAKLVDVSGRLLD-RKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPE 122
+GLT+D ++ A +V ++ ++ DLFWA+RGGGG F +V + PE
Sbjct: 155 HTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPE 213
Query: 123 TVTVFQVRKTL-EQNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASFLS 181
+T +QV T + + Q A +P +L +RL ++ G
Sbjct: 214 IITTYQVTTTWNRKQHVAGLKALQDWAQNTMPRELSMRLEINANALNWEGN--------- 264
Query: 182 LFLGDSNRLLSIMNESFPELGLAQ--SDCIETSW---IRSVLFWTNFQIDDPLNILLNRT 236
F G++ L I+ + G S +ET W I + L+ + I ++
Sbjct: 265 -FFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFY 323
Query: 237 PPTLTFLKRKSDYVKQPI-----------PKNGLEFIWKRMIELETPQMIFNPYGGK--- 282
+LT R SD Q P G W + +GGK
Sbjct: 324 ANSLT-APRLSDEAIQAFVDYKFDNSSVRPGRGWWIQW-------------DFHGGKNSA 369
Query: 283 MAEIPSTATPFPHRAGNLWKIQYVTNWNEPGTDAANRYLNLT----RKLYGYMTPFVS-- 336
+A + + T + HR LW Q+ D+ Y N T + +M FV+
Sbjct: 370 LAAVSNDETAYAHR-DQLWLWQFY--------DSIYDYENNTSPYPESGFEFMQGFVATI 420
Query: 337 -----KNPRQAFFNYRDIDLGINHNGKASFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNF 391
++ + +FNY D L + EEA+ Y+ GN +L IK K DP +
Sbjct: 421 EDTLPEDRKGKYFNYADTTL--------TKEEAQKL---YWRGNLEKLQAIKAKYDPEDV 469
Query: 392 FRNEQSIPVLPH 403
F N S+ + +
Sbjct: 470 FGNVVSVEPIAY 481
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 101/432 (23%), Positives = 163/432 (37%), Gaps = 79/432 (18%)
Query: 4 LHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVXXXXXXXXXXXXNMM 63
++ V VD + A +Q GA LG + ++ G P V
Sbjct: 97 MYRVSVD-DNNVATIQGGARLGYTALELLDQGN-RALSHGTAPAVGVGGHVLGGGYGFAT 154
Query: 64 RKYGLTVDNIVDAKLVDVSGRLLD-RKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPE 122
+GLT+D ++ A +V ++ ++ DLFWA+RGGGG F +V + PE
Sbjct: 155 HTHGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPE 213
Query: 123 TVTVFQVRKTL-EQNATEIVYRWQQVASKQLPDDLFVRLILDVVNGTKSGTKTVRASFLS 181
+T +QV T + + Q A +P +L +RL ++ G
Sbjct: 214 IITTYQVTTTWNRKQHVAGLKALQDWAQNTMPRELSMRLEINANALNWEGN--------- 264
Query: 182 LFLGDSNRLLSIMNESFPELGLAQ--SDCIETSW---IRSVLFWTNFQIDDPLNILLNRT 236
F G++ L I+ + G S +ET W I + L+ + I ++
Sbjct: 265 -FFGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFY 323
Query: 237 PPTLTFLKRKSDYVKQPI-----------PKNGLEFIWKRMIELETPQMIFNPYGGK--- 282
+LT R SD Q P G W + +GGK
Sbjct: 324 ANSLT-APRLSDEAIQAFVDYKFDNSSVRPGRGWWIQW-------------DFHGGKNSA 369
Query: 283 MAEIPSTATPFPHRAGNLWKIQYVTNWNEPGTDAANRYLNLT----RKLYGYMTPFVS-- 336
+A + + T + HR LW Q+ D+ Y N T + +M FV+
Sbjct: 370 LAAVSNDETAYAHR-DQLWLWQFY--------DSIYDYENNTSPYPESGFEFMQGFVATI 420
Query: 337 -----KNPRQAFFNYRDIDLGINHNGKASFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNF 391
++ + +FNY D L + EEA+ Y+ GN +L IK K DP +
Sbjct: 421 EDTLPEDRKGKYFNYADTTL--------TKEEAQKL---YWRGNLEKLQAIKAKYDPEDV 469
Query: 392 FRNEQSIPVLPH 403
F N S+ + +
Sbjct: 470 FGNVVSVEPIAY 481
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 115/448 (25%), Positives = 172/448 (38%), Gaps = 73/448 (16%)
Query: 1 MFNLHSVDVDIETETAWVQTGATLGEVY---YRISEKSKTHGFPAGVCPTVXXXXXXXXX 57
M L +V D E V+ GATLG VY +R+ + P G CP V
Sbjct: 109 MSRLSAVGFDEERGAFAVEAGATLGAVYKTLFRVWGVT----LPGGACPDVGAGGHILGG 164
Query: 58 XXXNMMRKYGLTVD--NIVDAKLVDVSGRLLDRKSMGE------DLFWAIRGGGGASFGV 109
+ R +G VD + V+ +VD SG + E DL+WA GGGG +FGV
Sbjct: 165 GYGPLSRMHGSIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWAHTGGGGGNFGV 224
Query: 110 VLAY--RIKLVRVPETVTVFQVRKTLEQNATEIVYRWQ---QVASKQL------------ 152
V+ Y R VP R E V+ W+ + A +L
Sbjct: 225 VVRYWLRTAEADVPPEPGRLLPRPPAEVLLNTTVWPWEGLDEAAFARLVRNHGRWFEQNS 284
Query: 153 -PD----DLFVRLILDVVNGTKSGTKTVRASFLSLFLGDSNRLLSIMNESFPELGL-AQS 206
PD DL+ L L ++SG + + RL + + +G+ S
Sbjct: 285 GPDSPWCDLYSVLAL---TRSQSGALAMTTQLDATGPDAEKRLETYLAAVSEGVGVQPHS 341
Query: 207 DCIETSWIRSVLFWTNFQIDDPLNILLNRTPPTLTFLKRKSDYVKQPIPKNGLEFIWKRM 266
D W+ S W D + K K+ Y ++ + ++ R+
Sbjct: 342 DTRRLPWLHSTR-WPGIAGDGDMT----------GRAKIKAAYARRSFDDRQIGTLYTRL 390
Query: 267 --IELETPQMIFN--PYGGKMAEIPSTATPFPHRAGNLWKIQYVTNWNEPGTDAAN-RYL 321
+ + P + YGGK+ +P+ T R L KI YVT W +P D + R++
Sbjct: 391 TSTDYDNPAGVVALIAYGGKVNAVPADRTAVAQRDSIL-KIVYVTTWEDPAQDPVHVRWI 449
Query: 322 -NLTRKLYGYM--TPFVSKNPRQAFFNYRDIDLGINHNGKASFEEAKAYGIK----YFLG 374
L R +Y P A+ NY D+DL + EE G+ Y+
Sbjct: 450 RELYRDVYADTGGVPVPGGAADGAYVNYPDVDL--------ADEEWNTSGVPWSELYYKD 501
Query: 375 NFNRLVKIKTKVDPGNFFRNEQSIPVLP 402
+ RL +K + DP N FR+ S+ V P
Sbjct: 502 AYPRLQAVKARWDPRNVFRHALSVRVPP 529
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 94/384 (24%), Positives = 155/384 (40%), Gaps = 77/384 (20%)
Query: 62 MMRKYGLTVDNIVDAKLVDVS----GRLL----DRKSMGEDLFWAIRGGGGASFGVVLAY 113
+ R++G VD + ++V V+ R++ +R DL+WA GGGG +FGVV Y
Sbjct: 168 LSRQFGSVVDYLYAVEVVVVNKQGKARVIVATRERDDPHHDLWWAHTGGGGGNFGVVTKY 227
Query: 114 RIKLVRVPETVTVFQVRKTLEQNAT----EIVYRWQQVASKQL----------------P 153
+RVPE V R + AT + + W + P
Sbjct: 228 ---WMRVPEDVGRNPERLLPKPPATLLTSTVTFDWAGMTEAAFSRLLRNHGEWYERNSGP 284
Query: 154 DDLFVRLILDVVNGTKSGTKTVRASFLSLFLG----DSNRLLSIMNESFPELGLAQSDC- 208
D + L ++ G + + + + D+ RLL E+ + G+ ++
Sbjct: 285 DSPYTGLWSQLMIGNEVPGMGESGFMMPIQVDATRPDARRLLDAHIEAVID-GVPPAEVP 343
Query: 209 --IETSWIRSVLFWTNFQIDDPLNILLNRTPPTLTFLKRKSDYVKQPIPKNGLEFIWKRM 266
IE W+ S R P + K K+ Y+++ + ++ +++ M
Sbjct: 344 EPIEQRWLASTPGRGG------------RGPAS----KTKAGYLRKRLTDRQIQAVYENM 387
Query: 267 IELET---PQMIFNPYGGKMAEIPSTATPFPHRAGNLWKIQYVTNWNEPGTDAANRYLNL 323
++ + YGGK+ + AT P R L K+ Y+T W PG +A ++L
Sbjct: 388 THMDGIDYGAVWLIGYGGKVNTVDPAATALPQRDAIL-KVNYITGWANPGNEA--KHLTW 444
Query: 324 TRKLYGYM------TPFVSKNPRQAFFNYRDIDL---GINHNGKASFEEAKAYGIKYFLG 374
RKLY + P + A+ NY D DL G+N +G + Y+ G
Sbjct: 445 VRKLYADVYAETGGVPVPNDVSDGAYINYPDSDLADPGLNTSGVPWHD-------LYYKG 497
Query: 375 NFNRLVKIKTKVDPGNFFRNEQSI 398
N RL K+K DP N F + SI
Sbjct: 498 NHPRLRKVKAAYDPRNHFHHALSI 521
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 98/410 (23%), Positives = 168/410 (40%), Gaps = 63/410 (15%)
Query: 12 ETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVXXXXXXXXXXXXNMMRKYGLTVD 71
+T A V+ GA LG + +++K G CP V +GL VD
Sbjct: 100 KTGIAHVEPGARLGHLATVLNDKYG-RAISHGTCPGVGISGHFAHGGFGFSSHMHGLAVD 158
Query: 72 NIVDAKLVDVSGRLLDRKSM-GEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQV- 129
++V +V GR+++ + DLFW I+G G ++FG+V +++ P+ +T F V
Sbjct: 159 SVVGVTVVLADGRIVEASATENADLFWGIKGAG-SNFGIVAVWKLATFPAPKVLTRFGVT 217
Query: 130 ----RKTLEQNATEIVYRWQQVASKQLPDDLFVRLILDV------VNGTKSGT-KTVRAS 178
KT E V + A P ++ R I D + G GT + RA+
Sbjct: 218 LNWKNKTSALKGIEAV---EDYARWVAPREVNFR-IGDYGAGNPGIEGLYYGTPEQWRAA 273
Query: 179 FLSLFLGDSNRLLSIMNESFPELGLAQSDCIETSWIRSVLFWTNFQIDDPL--NILLNRT 236
F L ++ P G + +WI SVL ++NF D + + N
Sbjct: 274 FQPLL------------DTLPA-GYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENFY 320
Query: 237 PPTLTFLKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIF--NPYGGK---MAEIPSTAT 291
+LT K D V KN +++ + +++ + + +GGK + ++ + T
Sbjct: 321 AKSLTLKSIKGDAV-----KNFVDYYFDVSNKVKDRFWFYQLDVHGGKNSQVTKVTNAET 375
Query: 292 PFPHRAGNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQ---AFFNYRD 348
+PHR LW IQ+ ++ T + + L G++ P+ + NY D
Sbjct: 376 AYPHR-DKLWLIQFYDRYDNNQTYPETSF----KFLDGWVNSVTKALPKSDWGMYINYAD 430
Query: 349 IDLGINHNGKASFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSI 398
+ ++ K + E N RL K+K K DP + F Q++
Sbjct: 431 PRMDRDYATKVYYGE-----------NLARLQKLKAKFDPTDRFYYPQAV 469
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 99/446 (22%), Positives = 165/446 (36%), Gaps = 79/446 (17%)
Query: 1 MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVXXXXXXXXXXXX 60
+ NLH++ + V +GAT+ +V + + P G C V
Sbjct: 85 LHNLHAIGPAADGAGVRVGSGATVDQVQKALFRRWNA-ALPLGACSAVGMGGLVAGGGYG 143
Query: 61 NMMRKYGLTVDNI--VDAKLVD-------VSGRLLDRKSMGEDLFWAIRGGGGASFGVVL 111
+ R+ GL VD++ V+ +VD V+ R D +GE LFWA GGGG +FGVV
Sbjct: 144 PLSRQLGLVVDHLHAVEVAVVDESRTVRLVTARADDTGDLGE-LFWAHTGGGGGNFGVVT 202
Query: 112 AYRIKL--------VRVPETVTVFQVRKTL-------EQNATEIVYR---WQQVASK--Q 151
AY + V +P V+K + E + ++ R W + S+
Sbjct: 203 AYEFRSPEHLATEPVGLPRAAGRLHVQKVVFPWAMIDETSFVTVMRRFFEWHERHSEPGS 262
Query: 152 LPDDLFVRLILDVVNGTKSGTKTVRASFLSLFLGDSN---------RLLSIMNESFPELG 202
LF VN SG + + D++ R ++ + E +G
Sbjct: 263 PESSLFATFF---VNHVSSGVLQL------MVQQDADVDPEGEILARFVASLTEGTGVVG 313
Query: 203 LAQSDCIETSWIRSVLFWTNFQIDDPLNILLNRTPPTLTFLKRKSDYVKQPIPKNGLEFI 262
+ + + SW+ + + D ++ R+ KS Y + P + +
Sbjct: 314 IPRGGVM--SWLTGTRYMSQADCGD---VMGARS-------ASKSAY-HRAAPTDEQLSV 360
Query: 263 WKRMIELETPQ----MIFNPYGGKMAEIPSTATPFPHRAGNLWKIQYVTNWNEPGTDAAN 318
R + + P ++FN YGG++ + P R ++ K + + W + D
Sbjct: 361 LHRHLHADHPGQASYVMFNSYGGEINRRGPSDAAVPQR-DSVVKSSWFSAWQDAELD--E 417
Query: 319 RYLNLTRKLY------GYMTPFVSKNPRQAFFNYRDIDLGINHNGKASFEEAKAYGIKYF 372
+L R LY P + NY D DL A + + Y+
Sbjct: 418 LHLGWLRGLYEEFFAGTGGVPVTGGRTDGCYINYPDADL----LDPARNRSGEPWHHLYY 473
Query: 373 LGNFNRLVKIKTKVDPGNFFRNEQSI 398
N+ RL K DP N F + SI
Sbjct: 474 KDNYARLRSAKRAWDPLNTFHHSMSI 499
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
Query: 4 LHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPA--GVCPTVXXXXXXXXXXXXN 61
++S+ +D A + G G++ + E +K G A G+ P V
Sbjct: 91 MNSIHIDTAGSRARIGGGVISGDL---VKEAAK-FGLAAVTGMHPKVGFCGLALNGGVGF 146
Query: 62 MMRKYGLTVDNIVDAKLVDVSGRLL----DRKSMGEDLFWAIRGGGGASFGVVLAYRIKL 117
+ KYGL DNI+ A LV +G ++ D + +LFWA+R G G +FGVV ++L
Sbjct: 147 LTPKYGLASDNILGATLVTATGDVIYCSDDERP---ELFWAVR-GAGPNFGVVTEVEVQL 202
Query: 118 VRVP 121
+P
Sbjct: 203 YELP 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,326,544
Number of Sequences: 62578
Number of extensions: 515384
Number of successful extensions: 1143
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1069
Number of HSP's gapped (non-prelim): 25
length of query: 403
length of database: 14,973,337
effective HSP length: 101
effective length of query: 302
effective length of database: 8,652,959
effective search space: 2613193618
effective search space used: 2613193618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)