Query 015646
Match_columns 403
No_of_seqs 192 out of 1961
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:15:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 8.2E-31 1.8E-35 264.4 33.0 134 1-136 116-257 (525)
2 PLN02805 D-lactate dehydrogena 100.0 8.6E-28 1.9E-32 245.9 24.0 351 1-400 184-551 (555)
3 PRK11230 glycolate oxidase sub 99.9 3.5E-26 7.6E-31 232.7 23.1 141 1-142 106-252 (499)
4 TIGR00387 glcD glycolate oxida 99.9 1.4E-25 3E-30 224.4 21.0 142 1-143 48-196 (413)
5 COG0277 GlcD FAD/FMN-containin 99.9 2.5E-25 5.5E-30 226.2 21.1 132 1-133 81-219 (459)
6 TIGR01678 FAD_lactone_ox sugar 99.9 8E-24 1.7E-28 212.0 27.2 140 1-149 63-205 (438)
7 TIGR01679 bact_FAD_ox FAD-link 99.9 9.8E-24 2.1E-28 211.1 25.3 121 1-124 57-179 (419)
8 PRK11282 glcE glycolate oxidas 99.9 1.5E-24 3.3E-29 210.2 14.4 130 1-131 43-180 (352)
9 TIGR01676 GLDHase galactonolac 99.9 6.6E-23 1.4E-27 207.0 15.9 141 1-149 110-252 (541)
10 TIGR01677 pln_FAD_oxido plant- 99.9 6.9E-22 1.5E-26 202.2 15.6 120 1-123 85-214 (557)
11 KOG1231 Proteins containing th 99.9 6.5E-22 1.4E-26 189.3 13.7 118 3-122 121-240 (505)
12 PLN02465 L-galactono-1,4-lacto 99.8 5.7E-19 1.2E-23 179.9 16.3 121 1-124 145-267 (573)
13 PF08031 BBE: Berberine and be 99.7 8.5E-18 1.9E-22 114.6 2.0 47 342-399 1-47 (47)
14 PF01565 FAD_binding_4: FAD bi 99.6 3.6E-16 7.9E-21 133.1 6.3 87 1-87 50-137 (139)
15 KOG1262 FAD-binding protein DI 99.6 2.2E-15 4.7E-20 142.0 8.3 135 7-146 115-251 (543)
16 KOG1232 Proteins containing th 99.5 9.8E-14 2.1E-18 130.6 10.5 130 1-131 140-276 (511)
17 PRK13905 murB UDP-N-acetylenol 99.5 4E-14 8.6E-19 135.7 7.7 111 1-121 80-193 (298)
18 KOG4730 D-arabinono-1, 4-lacto 99.5 4.5E-13 9.8E-18 129.1 11.7 127 1-129 98-226 (518)
19 PRK11183 D-lactate dehydrogena 99.4 8.2E-13 1.8E-17 132.4 11.2 140 1-144 94-289 (564)
20 KOG1233 Alkyl-dihydroxyacetone 99.3 3.6E-12 7.8E-17 120.3 9.1 135 1-136 215-355 (613)
21 PRK13903 murB UDP-N-acetylenol 99.0 9.6E-10 2.1E-14 107.2 9.3 110 4-121 84-197 (363)
22 PRK14652 UDP-N-acetylenolpyruv 99.0 7.3E-10 1.6E-14 106.0 8.1 106 4-121 89-196 (302)
23 TIGR00179 murB UDP-N-acetyleno 98.9 2.5E-09 5.5E-14 101.6 8.0 110 1-119 62-174 (284)
24 PRK13906 murB UDP-N-acetylenol 98.9 2.1E-09 4.6E-14 103.1 7.4 110 1-120 86-197 (307)
25 PRK12436 UDP-N-acetylenolpyruv 98.9 4.4E-09 9.5E-14 100.9 8.5 109 1-120 86-197 (305)
26 PRK14649 UDP-N-acetylenolpyruv 98.6 1.2E-07 2.6E-12 90.6 8.1 107 6-120 76-192 (295)
27 PRK14653 UDP-N-acetylenolpyruv 98.1 1.2E-05 2.6E-10 76.8 8.6 107 2-121 83-194 (297)
28 PRK14650 UDP-N-acetylenolpyruv 97.3 0.00067 1.5E-08 64.8 7.8 108 3-121 85-195 (302)
29 COG0812 MurB UDP-N-acetylmuram 97.3 0.0014 3E-08 61.9 9.0 109 3-120 72-183 (291)
30 PRK00046 murB UDP-N-acetylenol 97.2 0.00085 1.8E-08 65.1 6.8 110 3-120 70-188 (334)
31 PRK14648 UDP-N-acetylenolpyruv 96.7 0.0062 1.3E-07 59.3 7.7 113 3-121 81-237 (354)
32 PRK13904 murB UDP-N-acetylenol 96.4 0.014 2.9E-07 54.6 7.8 102 2-121 57-160 (257)
33 PRK14651 UDP-N-acetylenolpyruv 96.3 0.014 3E-07 55.1 7.7 94 17-120 75-170 (273)
34 PF09265 Cytokin-bind: Cytokin 96.0 0.0092 2E-07 56.2 4.8 34 364-398 247-280 (281)
35 PF02913 FAD-oxidase_C: FAD li 95.8 0.0075 1.6E-07 55.6 3.4 113 253-396 134-247 (248)
36 PLN00107 FAD-dependent oxidore 91.1 0.48 1E-05 43.9 5.7 28 366-395 170-197 (257)
37 PF04030 ALO: D-arabinono-1,4- 87.8 0.95 2.1E-05 42.4 5.3 28 366-395 227-254 (259)
38 TIGR01677 pln_FAD_oxido plant- 84.0 2.3 5E-05 44.5 6.2 28 366-395 476-503 (557)
39 KOG4730 D-arabinono-1, 4-lacto 55.8 5.8 0.00012 39.8 1.2 20 374-393 485-504 (518)
40 PRK11282 glcE glycolate oxidas 54.9 7.8 0.00017 38.1 2.0 22 374-395 324-346 (352)
41 TIGR01676 GLDHase galactonolac 35.5 21 0.00045 37.3 1.6 27 367-396 509-535 (541)
42 PLN02465 L-galactono-1,4-lacto 33.7 24 0.00052 37.1 1.8 29 364-395 536-564 (573)
43 PHA02087 hypothetical protein 32.0 62 0.0013 23.5 3.0 21 67-87 38-58 (83)
44 PF12108 SF3a60_bindingd: Spli 29.4 20 0.00042 21.4 0.2 12 374-385 11-22 (28)
45 KOG4656 Copper chaperone for s 27.1 89 0.0019 28.1 3.9 35 3-37 33-67 (247)
46 COG2838 Icd Monomeric isocitra 23.9 1.2E+02 0.0026 31.0 4.6 73 25-100 389-462 (744)
47 PF00403 HMA: Heavy-metal-asso 22.6 1.4E+02 0.003 20.5 3.7 32 5-36 27-61 (62)
48 PF03392 OS-D: Insect pheromon 21.5 56 0.0012 25.6 1.4 15 378-392 77-91 (95)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=8.2e-31 Score=264.42 Aligned_cols=134 Identities=21% Similarity=0.264 Sum_probs=118.0
Q ss_pred CCCCCe-------eEEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccCcccccE
Q 015646 1 MFNLHS-------VDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNI 73 (403)
Q Consensus 1 l~~m~~-------i~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v 73 (403)
|++||+ +++|.+..+|+|++|++|.||++++.++|.. ....+.+..++|||.+.+||+|..+.+||+.+|||
T Consensus 116 ms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~Gla-P~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~V 194 (525)
T PLN02441 116 MRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLA-PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNV 194 (525)
T ss_pred CCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCc-cCCccccCceEEeEEcCCCCccccccccCcHHHhE
Confidence 688998 3789999999999999999999999998742 22456777889999999999999999999999999
Q ss_pred eEEEEEecCccEEe-cCCCCcchhHHhhccCCCCeEEEEEEEEEEeecCceEEEEEEEecchhh
Q 015646 74 VDAKLVDVSGRLLD-RKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRKTLEQN 136 (403)
Q Consensus 74 ~~~~vV~a~G~~~~-~~~~~~dLfwa~rG~gg~~fGivt~~~~~~~p~~~~~~~~~~~~~~~~~ 136 (403)
+++||||+||++++ ++++|+|||||++||+ |+|||||++|+|++|+|+.+.++.+.+....+
T Consensus 195 l~leVVtadGevv~~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~ 257 (525)
T PLN02441 195 LELDVVTGKGEVVTCSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSDFST 257 (525)
T ss_pred EEEEEEeCCceEEEeCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCCHHH
Confidence 99999999999997 8888999999999998 79999999999999999977666666654333
No 2
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=99.96 E-value=8.6e-28 Score=245.90 Aligned_cols=351 Identities=17% Similarity=0.186 Sum_probs=206.7
Q ss_pred CCCCCee-EEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccCcccccEeEEEEE
Q 015646 1 MFNLHSV-DVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLV 79 (403)
Q Consensus 1 l~~m~~i-~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v~~~~vV 79 (403)
|++||+| ++|+++++|+||||+++.+|+++|.++|+ .++...++.++|||+++++++|..+.+||.++|+|+++|||
T Consensus 184 l~~mn~I~~id~~~~~vtVeaGv~~~~L~~~L~~~Gl--~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levV 261 (555)
T PLN02805 184 MSLMKSVKALHVEDMDVVVEPGIGWLELNEYLEPYGL--FFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVV 261 (555)
T ss_pred ccCCCCeEEEeCCCCEEEEeCCcCHHHHHHHHHHcCC--EeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEE
Confidence 6789998 79999999999999999999999999874 45666667789999999999999999999999999999999
Q ss_pred ecCccEEe--cC----CCCcchhHHhhccCCCCeEEEEEEEEEEeecCceEEEEEEEecchhhHHHHHHHHHHHHhcCCC
Q 015646 80 DVSGRLLD--RK----SMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRKTLEQNATEIVYRWQQVASKQLP 153 (403)
Q Consensus 80 ~a~G~~~~--~~----~~~~dLfwa~rG~gg~~fGivt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 153 (403)
|+||++++ +. ..++||||+++|++ |+|||||++++|++|.|+......+.|+..+++.+++..... ....|
T Consensus 262 l~dG~iv~~~~~~~k~~~g~dL~~l~~Gse-GtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~~--~g~~p 338 (555)
T PLN02805 262 LPNGDVVKTASRARKSAAGYDLTRLVIGSE-GTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATML--SGIQV 338 (555)
T ss_pred cCCceEEEecCccccCCCCccHHHHhccCC-CceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHHh--CCCCc
Confidence 99999995 22 24689999999999 799999999999999999777667777755555554443222 11011
Q ss_pred CCceEEEEEeee------cCCCCCCceEEEEEEEEEecChhhHHh---hhhccCCcCCCCcCcceeecHHHHHHhhhccC
Q 015646 154 DDLFVRLILDVV------NGTKSGTKTVRASFLSLFLGDSNRLLS---IMNESFPELGLAQSDCIETSWIRSVLFWTNFQ 224 (403)
Q Consensus 154 ~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~G~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (403)
. .+.++ ... .....+... ...+..-+.|++++... .+...+.+.+....... .+..+....|..-.
T Consensus 339 s--a~Elm-D~~~~~~~~~~~~~~~p~-~~~Ll~e~~g~~~~~~~~~~~~~~i~~~~g~~~~~~a-~~~~e~~~lW~~R~ 413 (555)
T PLN02805 339 S--RVELL-DEVQIRAINMANGKNLPE-APTLMFEFIGTEAYAREQTLIVQKIASKHNGSDFVFA-EEPEAKKELWKIRK 413 (555)
T ss_pred E--EEEEE-CHHHHHHHHHhcCCCCCc-ceEEEEEEecCcHHHHHHHHHHHHHHHhCCCceEEEe-CCHHHHHHHHHHHH
Confidence 1 12221 100 000000000 12233345566543321 12111111121100000 01111111121000
Q ss_pred CCCccccccCCCCCCCccceeccccccCCCCHhHHHHHHHHHHhCCCcEEEEEeCCCccCCCCCCCCCcccccCceEEEE
Q 015646 225 IDDPLNILLNRTPPTLTFLKRKSDYVKQPIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPHRAGNLWKIQ 304 (403)
Q Consensus 225 ~~~~~~~~~~r~~~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~tafp~R~~~~~~~~ 304 (403)
. ..... .+ ... ...... .+-.++.+.+.++++.+.+.- .+..-....|.|-..-.+|+.
T Consensus 414 -~-~~~~~-~~-~~~-~~~~~~---~DvaVP~s~L~e~i~~~~~~~-------------~~~~~~~~~~gHaGdGnlH~~ 472 (555)
T PLN02805 414 -E-ALWAC-FA-MEP-KYEAMI---TDVCVPLSHLAELISRSKKEL-------------DASPLVCTVIAHAGDGNFHTI 472 (555)
T ss_pred -H-HHHHH-hh-cCC-CCceeE---EEEEEEHHHHHHHHHHHHHHH-------------HHcCCeEEEEEEcCCCcEEEE
Confidence 0 00000 00 000 100000 111356677777777765420 011111122444322356665
Q ss_pred EEeEeCCCCchhhHHHHHHHHHHHhcccccccCCCCcccccccCCccCCCCCCCchhHHHhhhhhhcccc-chHHHHHhh
Q 015646 305 YVTNWNEPGTDAANRYLNLTRKLYGYMTPFVSKNPRQAFFNYRDIDLGINHNGKASFEEAKAYGIKYFLG-NFNRLVKIK 383 (403)
Q Consensus 305 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~y~G~-n~~rL~~iK 383 (403)
+. .+...+++.++..+..+.+++.+..+ +|+-..|+..... ...|...+||+ .++-+++||
T Consensus 473 i~--~~~~~~~~~~~~~~~~~~i~~~~~~~-----gGsiSgEHGiG~~-----------k~~~l~~~~g~~~~~lm~~IK 534 (555)
T PLN02805 473 IL--FDPSQEDQRREAERLNHFMVHTALSM-----EGTCTGEHGVGTG-----------KMKYLEKELGIEALQTMKRIK 534 (555)
T ss_pred ec--cCCCCHHHHHHHHHHHHHHHHHHHHc-----CCeEeEECCCChh-----------HHHHHHHhcCHHHHHHHHHHH
Confidence 43 22222223344455556666655444 4666666655432 34788888985 599999999
Q ss_pred hhcCCCCCccCCCCcCC
Q 015646 384 TKVDPGNFFRNEQSIPV 400 (403)
Q Consensus 384 ~kyDP~n~F~~~~~I~p 400 (403)
+.+||+|+|+...-++|
T Consensus 535 ~a~DP~gILNPGKi~~~ 551 (555)
T PLN02805 535 KALDPNNIMNPGKLIPP 551 (555)
T ss_pred HHhCcCcCCCCCceeCc
Confidence 99999999999998865
No 3
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=99.95 E-value=3.5e-26 Score=232.75 Aligned_cols=141 Identities=23% Similarity=0.274 Sum_probs=120.8
Q ss_pred CCCCCee-EEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccCcccccEeEEEEE
Q 015646 1 MFNLHSV-DVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLV 79 (403)
Q Consensus 1 l~~m~~i-~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v~~~~vV 79 (403)
|++||+| ++|+++++|+||||+++.+|.++|.++|+.+++.+++....+|||++.+++.|..+.+||.++|+|+++|||
T Consensus 106 l~~ln~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levV 185 (499)
T PRK11230 106 MARFNRILDINPVGRRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEIL 185 (499)
T ss_pred cccCCCceEEcCCCCEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEE
Confidence 6899997 999999999999999999999999999865444456666778999999999999999999999999999999
Q ss_pred ecCccEEe-cC----CCCcchhHHhhccCCCCeEEEEEEEEEEeecCceEEEEEEEecchhhHHHHHH
Q 015646 80 DVSGRLLD-RK----SMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRKTLEQNATEIVY 142 (403)
Q Consensus 80 ~a~G~~~~-~~----~~~~dLfwa~rG~gg~~fGivt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 142 (403)
++||++++ +. ..++||+|+++|++ |+|||||++|+|++|.|+....+.+.|+..+++.+++.
T Consensus 186 l~~G~i~~~~~~~~~~~g~dl~~l~~Gs~-GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~ 252 (499)
T PRK11230 186 TLDGEALTLGSDALDSPGFDLLALFTGSE-GMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVG 252 (499)
T ss_pred cCCCcEEEeCCccCCCCccchHhhhccCC-CccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHH
Confidence 99999996 21 34789999999999 79999999999999999976666666664444444443
No 4
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.94 E-value=1.4e-25 Score=224.45 Aligned_cols=142 Identities=25% Similarity=0.304 Sum_probs=120.4
Q ss_pred CCCCCee-EEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccCcccccEeEEEEE
Q 015646 1 MFNLHSV-DVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLV 79 (403)
Q Consensus 1 l~~m~~i-~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v~~~~vV 79 (403)
|++||+| ++|+++++|+||||+++.+|.++|.++|+.+.+.+++....+|||++.+++.|..+.+||...|+|+++|||
T Consensus 48 l~~mn~i~~id~~~~~v~veaGv~~~~l~~~l~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV 127 (413)
T TIGR00387 48 FKHMNKILEIDVVNLTAVVQPGVRNLELEQAVEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVV 127 (413)
T ss_pred hHHcCceeEEcCCCCEEEEcCCccHHHHHHHHHHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEE
Confidence 5789997 999999999999999999999999999865444456666678999999999999999999999999999999
Q ss_pred ecCccEEe-c-----CCCCcchhHHhhccCCCCeEEEEEEEEEEeecCceEEEEEEEecchhhHHHHHHH
Q 015646 80 DVSGRLLD-R-----KSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRKTLEQNATEIVYR 143 (403)
Q Consensus 80 ~a~G~~~~-~-----~~~~~dLfwa~rG~gg~~fGivt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 143 (403)
++||++++ . ...++||+|.+.|++ |+|||||++++|++|.|+....+.+.|+..+++.+++..
T Consensus 128 ~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~-GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~ 196 (413)
T TIGR00387 128 TADGEILRIGGKTAKDVAGYDLTGLFVGSE-GTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYD 196 (413)
T ss_pred eCCCCEEEeCCcccCCCCCCChhhhcccCC-ccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHH
Confidence 99999995 2 234679999999999 799999999999999999766666666654444444433
No 5
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=99.94 E-value=2.5e-25 Score=226.20 Aligned_cols=132 Identities=27% Similarity=0.368 Sum_probs=114.9
Q ss_pred CCCCCee-EEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccCcccccEeEEEEE
Q 015646 1 MFNLHSV-DVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLV 79 (403)
Q Consensus 1 l~~m~~i-~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v~~~~vV 79 (403)
|++||+| ++|+++++|+|+||+++.+|.++|.++|+.+.+.+++..+++|||++.++++|..+.+||.++|+|++++||
T Consensus 81 l~~mn~i~~id~~~~~~~v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV 160 (459)
T COG0277 81 LSRLNRILEIDPEDGTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVV 160 (459)
T ss_pred chhhcchhccCcCCCEEEEcCCccHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEE
Confidence 6789998 799999999999999999999999999876655555555899999999999999999999999999999999
Q ss_pred ecCccEEe--c----CCCCcchhHHhhccCCCCeEEEEEEEEEEeecCceEEEEEEEecc
Q 015646 80 DVSGRLLD--R----KSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRKTL 133 (403)
Q Consensus 80 ~a~G~~~~--~----~~~~~dLfwa~rG~gg~~fGivt~~~~~~~p~~~~~~~~~~~~~~ 133 (403)
++||++++ . +....||++++.|+. |+|||||++++|++|.|+........+..
T Consensus 161 ~~dG~i~~~~~~~~k~~~g~dl~~l~iGs~-GtlGiit~~tl~l~p~~~~~~~~~~~~~~ 219 (459)
T COG0277 161 LPDGEILRLGRKLRKDNAGYDLTALFVGSE-GTLGIITEATLKLLPLPETKATAVAGFPS 219 (459)
T ss_pred cCCceehhhcCcccCCCCCCCHHHhcccCC-ccceEEEEEEEEeccCCchheEEEEeCCC
Confidence 99999995 2 234579999999998 89999999999999998865554444444
No 6
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=99.93 E-value=8e-24 Score=212.01 Aligned_cols=140 Identities=20% Similarity=0.307 Sum_probs=120.1
Q ss_pred CCCCCee-EEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceec-CCCCCccccccccccCccCccccccCcccccEeEEEE
Q 015646 1 MFNLHSV-DVDIETETAWVQTGATLGEVYYRISEKSKTHGFP-AGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKL 78 (403)
Q Consensus 1 l~~m~~i-~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~-~g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v~~~~v 78 (403)
|++||+| ++|+++++|+|+||+++.+|.+.|.++|+. ++ .|.++.++|||++.+|+||. +.+||..+|+|++++|
T Consensus 63 l~~l~~i~~id~~~~~vtV~aG~~l~~L~~~L~~~Gl~--l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~v 139 (438)
T TIGR01678 63 LDKMNKVLQFDKEKKQITVEAGIRLYQLHEQLDEHGYS--MSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTI 139 (438)
T ss_pred hhhcCCceEEcCCCCEEEEcCCCCHHHHHHHHHHcCCE--ecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEE
Confidence 5789997 999999999999999999999999998754 44 68999999999999999996 7899999999999999
Q ss_pred EecCccEEe-cCCCCcchhHHhhccCCCCeEEEEEEEEEEeecCceEEEEEEEecchhhHHHHHHHHHHHHh
Q 015646 79 VDVSGRLLD-RKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRKTLEQNATEIVYRWQQVAS 149 (403)
Q Consensus 79 V~a~G~~~~-~~~~~~dLfwa~rG~gg~~fGivt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (403)
|++||++++ +..+++|||||++|++ |+|||||++|+|++|........ . ..+..++++.|++...
T Consensus 140 V~~~G~i~~~s~~~~~dlf~a~~~~~-G~lGIIt~vtl~l~p~~~l~~~~--~---~~~~~~~~~~~~~~~~ 205 (438)
T TIGR01678 140 MTADGEVLECSEERNADVFQAARVSL-GCLGIIVTVTIQVVPQFHLQETS--F---VSTLKELLDNWDSHWK 205 (438)
T ss_pred EcCCCcEEEeCCCCChhHHHHHhcCC-CceEeeEEEEEEEEeccceEEEE--e---cCCHHHHHHHHHHHhh
Confidence 999999997 7778999999999998 79999999999999987643221 1 1234566777766544
No 7
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=99.93 E-value=9.8e-24 Score=211.06 Aligned_cols=121 Identities=24% Similarity=0.350 Sum_probs=108.4
Q ss_pred CCCCCee-EEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccCcccccEeEEEEE
Q 015646 1 MFNLHSV-DVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLV 79 (403)
Q Consensus 1 l~~m~~i-~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v~~~~vV 79 (403)
|++||+| ++|+++++|+||||+++.||.+.|.++|+.+.+ .|.++.++|||.+.+|+||. +..||..+|+|+++|||
T Consensus 57 l~~l~~i~~~d~~~~~v~v~aG~~l~~l~~~L~~~G~~l~~-~~~~~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV 134 (419)
T TIGR01679 57 LTGLQGVVDVDQPTGLATVEAGTRLGALGPQLAQRGLGLEN-QGDIDPQSIGGALGTATHGT-GVRFQALHARIVSLRLV 134 (419)
T ss_pred hhHcCCceeecCCCCEEEEcCCCCHHHHHHHHHHcCCcccc-CCCCCCceeccceecCCCCC-CccCCchhhhEEEEEEE
Confidence 5789997 999999999999999999999999999864432 35666788999999999997 56899999999999999
Q ss_pred ecCccEEe-cCCCCcchhHHhhccCCCCeEEEEEEEEEEeecCceE
Q 015646 80 DVSGRLLD-RKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETV 124 (403)
Q Consensus 80 ~a~G~~~~-~~~~~~dLfwa~rG~gg~~fGivt~~~~~~~p~~~~~ 124 (403)
++||++++ ++.+|||||||+|||+ |+|||||++|+|++|.+...
T Consensus 135 ~a~G~v~~~~~~~~~dLf~a~~g~~-G~lGVIt~vtl~~~p~~~~~ 179 (419)
T TIGR01679 135 TAGGKVLDLSEGDDQDMYLAARVSL-GALGVISQVTLQTVALFRLR 179 (419)
T ss_pred cCCCCEEEEcCCCCHHHHHHHHhCC-CceEEEEEEEEEeecceEeE
Confidence 99999997 7778999999999998 79999999999999997643
No 8
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.92 E-value=1.5e-24 Score=210.15 Aligned_cols=130 Identities=18% Similarity=0.245 Sum_probs=112.6
Q ss_pred CCCCCee-EEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecC-CCCCccccccccccCccCccccccCcccccEeEEEE
Q 015646 1 MFNLHSV-DVDIETETAWVQTGATLGEVYYRISEKSKTHGFPA-GVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKL 78 (403)
Q Consensus 1 l~~m~~i-~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~-g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v~~~~v 78 (403)
|++||+| ++|+++.+|+|++|+++.||.++|.++|..+++.+ ..++..+|||++.+|++|+.+.+||..+|+|++++|
T Consensus 43 l~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~v 122 (352)
T PRK11282 43 TRAHRGIVSYDPTELVITARAGTPLAELEAALAEAGQMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRL 122 (352)
T ss_pred cccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcCCeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEE
Confidence 6899997 99999999999999999999999999986555433 345568899999999999999999999999999999
Q ss_pred EecCccEEe-c-----CCCCcchhHHhhccCCCCeEEEEEEEEEEeecCceEEEEEEEe
Q 015646 79 VDVSGRLLD-R-----KSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRK 131 (403)
Q Consensus 79 V~a~G~~~~-~-----~~~~~dLfwa~rG~gg~~fGivt~~~~~~~p~~~~~~~~~~~~ 131 (403)
|++||++++ . ...++||||+++|++ |+|||||++|||++|.|+....+.+.+
T Consensus 123 V~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~-GtLGVitevtlkl~P~p~~~~t~~~~~ 180 (352)
T PRK11282 123 INGRGEHLRFGGQVMKNVAGYDVSRLMAGSL-GTLGVLLEVSLKVLPRPRAELTLRLEM 180 (352)
T ss_pred EcCCceEEEeCCcccCCCCCchHHHHHhhCC-chhhhheEEEEEEEecCceEEEEEEec
Confidence 999999996 2 124689999999999 899999999999999998654444443
No 9
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=99.90 E-value=6.6e-23 Score=207.00 Aligned_cols=141 Identities=22% Similarity=0.257 Sum_probs=118.8
Q ss_pred CCCCCee-EEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccCcccccEeEEEEE
Q 015646 1 MFNLHSV-DVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLV 79 (403)
Q Consensus 1 l~~m~~i-~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v~~~~vV 79 (403)
|++||+| +||+++++|+|+||+++.||.++|.++|+.+ ...|+++.++|||++.+|+||.. ..||..+|+|++++||
T Consensus 110 L~~ln~Vl~vD~~~~tVtV~AG~~l~~L~~~L~~~Glal-~n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lV 187 (541)
T TIGR01676 110 LALMDKVLEVDEEKKRVRVQAGIRVQQLVDAIKEYGITL-QNFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLV 187 (541)
T ss_pred hhhCCCCEEEcCCCCEEEEcCCCCHHHHHHHHHHcCCEe-ccCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEE
Confidence 6789996 9999999999999999999999999997543 24588999999999999999985 4799999999999999
Q ss_pred ecCccEEe-cCCCCcchhHHhhccCCCCeEEEEEEEEEEeecCceEEEEEEEecchhhHHHHHHHHHHHHh
Q 015646 80 DVSGRLLD-RKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRKTLEQNATEIVYRWQQVAS 149 (403)
Q Consensus 80 ~a~G~~~~-~~~~~~dLfwa~rG~gg~~fGivt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (403)
|+||++++ ++.+|||||||+|||+ |+|||||++|+|+.|.+.... .....+ ..++++.+.++..
T Consensus 188 ta~G~vv~~s~~~~pdLF~Aargsl-G~LGVItevTLr~~Pa~~l~~-~~~~~~----~~e~l~~~~~~~~ 252 (541)
T TIGR01676 188 TPAKGTIEISKDKDPELFFLARCGL-GGLGVVAEVTLQCVERQELVE-HTFISN----MKDIKKNHKKFLA 252 (541)
T ss_pred ECCCCEEEECCCCCHHHHHHHhcCC-CceEeEEEEEEEEEeccceeE-EEEecC----HHHHHHHHHHHHh
Confidence 99999997 7778999999999998 799999999999999987432 222222 3455555665543
No 10
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.88 E-value=6.9e-22 Score=202.16 Aligned_cols=120 Identities=23% Similarity=0.251 Sum_probs=107.4
Q ss_pred CCCCCe-eEEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceec-CCCCCccccccccccCccCccc-cccCcccccEeEEE
Q 015646 1 MFNLHS-VDVDIETETAWVQTGATLGEVYYRISEKSKTHGFP-AGVCPTVGVGGHIGGGGYGNMM-RKYGLTVDNIVDAK 77 (403)
Q Consensus 1 l~~m~~-i~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~-~g~~~~vgvgG~~~ggG~g~~s-~~~G~~~D~v~~~~ 77 (403)
|++||+ |+||+++++|+|+||+++.+|.+.|.++|+ +++ .+.+..++|||.+.+|+||... +.||..+|+|++++
T Consensus 85 L~~Ln~il~iD~~~~tVtV~AG~~l~~L~~~L~~~Gl--al~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~ 162 (557)
T TIGR01677 85 TKRLNHVVAVDATAMTVTVESGMSLRELIVEAEKAGL--ALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIR 162 (557)
T ss_pred cccCCCCEEEeCCCCEEEECCCCcHHHHHHHHHHcCC--EeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEE
Confidence 678999 699999999999999999999999999875 443 3566778999999999999765 68999999999999
Q ss_pred EEecCc------cEEe-cCCCCcchhHHhhccCCCCeEEEEEEEEEEeecCce
Q 015646 78 LVDVSG------RLLD-RKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPET 123 (403)
Q Consensus 78 vV~a~G------~~~~-~~~~~~dLfwa~rG~gg~~fGivt~~~~~~~p~~~~ 123 (403)
|||+|| ++++ +..+|+|||||+||++ |+|||||++|+|++|.+..
T Consensus 163 vV~a~G~a~G~~~v~~~s~~~~~dLf~a~rgsl-G~lGVVtevTL~~~P~~~~ 214 (557)
T TIGR01677 163 LVVPASAAEGFAKVRILSEGDTPNEFNAAKVSL-GVLGVISQVTLALQPMFKR 214 (557)
T ss_pred EEeCCCcccCcceEEEeCCCCCHHHHHhhccCC-CccEeeeEEEEEEEccccc
Confidence 999999 7776 7778999999999999 8999999999999998763
No 11
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.87 E-value=6.5e-22 Score=189.33 Aligned_cols=118 Identities=22% Similarity=0.350 Sum_probs=101.1
Q ss_pred CCCee-EEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccCcccccEeEEEEEec
Q 015646 3 NLHSV-DVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLVDV 81 (403)
Q Consensus 3 ~m~~i-~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v~~~~vV~a 81 (403)
.|+++ -+..+..+|.|.||..|-||.+++.++|..=....-.. ..+|||.+..+|+|.+.-+||...+||++++|||+
T Consensus 121 ~~~~~~~~~~~~~yvdV~~g~~Widll~~t~e~GL~p~swtDyl-~ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtg 199 (505)
T KOG1231|consen 121 LMKDVPVLVVDDLYVDVSAGTLWIDLLDYTLEYGLSPFSWTDYL-PLTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTG 199 (505)
T ss_pred ccCCCceeecccceEEeeCChhHHHHHHHHHHcCCCccCcCCcc-ceeecceeccCccccceeeccchhhceEEEEEEcC
Confidence 35554 46677799999999999999999999875101111112 27899999999999999999999999999999999
Q ss_pred CccEEe-cCCCCcchhHHhhccCCCCeEEEEEEEEEEeecCc
Q 015646 82 SGRLLD-RKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPE 122 (403)
Q Consensus 82 ~G~~~~-~~~~~~dLfwa~rG~gg~~fGivt~~~~~~~p~~~ 122 (403)
+|+|++ ++..|++||.++.||. |+|||||++++|++|+|.
T Consensus 200 kGeiv~cs~r~n~~lf~~vlGgl-GqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 200 KGEIVTCSKRANSNLFFLVLGGL-GQFGIITRARIKLEPAPK 240 (505)
T ss_pred CCcEEecccccCceeeeeeeccC-cceeeEEEEEEEeccCCc
Confidence 999997 7778999999999999 799999999999999993
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.80 E-value=5.7e-19 Score=179.94 Aligned_cols=121 Identities=24% Similarity=0.274 Sum_probs=107.9
Q ss_pred CCCCCee-EEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccCcccccEeEEEEE
Q 015646 1 MFNLHSV-DVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLV 79 (403)
Q Consensus 1 l~~m~~i-~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v~~~~vV 79 (403)
|++||+| ++|+++++|+|++|+++.+|.+.|.++|+.+. ..|.....+|||.+.+|+||... .+|..+|+|++++||
T Consensus 145 L~~l~~Il~vD~e~~~VtV~AG~~l~~L~~~L~~~GLal~-n~g~I~~~TIGGaIstGtHGtG~-~~g~i~d~V~~l~lV 222 (573)
T PLN02465 145 LALMDKVLEVDKEKKRVTVQAGARVQQVVEALRPHGLTLQ-NYASIREQQIGGFIQVGAHGTGA-RIPPIDEQVVSMKLV 222 (573)
T ss_pred CcCCCCcEEEeCCCCEEEEccCCCHHHHHHHHHHcCCEec-cCCCCCCeeecchhhCCCCCcCC-CcCcHhheEEEEEEE
Confidence 6789996 99999999999999999999999999975432 34677788999999999999855 689999999999999
Q ss_pred ecCccEEe-cCCCCcchhHHhhccCCCCeEEEEEEEEEEeecCceE
Q 015646 80 DVSGRLLD-RKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETV 124 (403)
Q Consensus 80 ~a~G~~~~-~~~~~~dLfwa~rG~gg~~fGivt~~~~~~~p~~~~~ 124 (403)
+++|++++ +..+++|||||.|++. |.|||||++|||+.|.+...
T Consensus 223 ta~G~vv~~s~~~~pdLF~aar~gl-G~lGVIteVTLql~P~~~L~ 267 (573)
T PLN02465 223 TPAKGTIELSKEDDPELFRLARCGL-GGLGVVAEVTLQCVPAHRLV 267 (573)
T ss_pred ECCCCEEEECCCCCHHHHhHhhccC-CCCcEEEEEEEEEEecCceE
Confidence 99999997 7778899999999999 78999999999999998743
No 13
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.68 E-value=8.5e-18 Score=114.56 Aligned_cols=47 Identities=47% Similarity=0.733 Sum_probs=34.8
Q ss_pred ccccccCCccCCCCCCCchhHHHhhhhhhccccchHHHHHhhhhcCCCCCccCCCCcC
Q 015646 342 AFFNYRDIDLGINHNGKASFEEAKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSIP 399 (403)
Q Consensus 342 ~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~y~G~n~~rL~~iK~kyDP~n~F~~~~~I~ 399 (403)
+|+||+|.+++ ..+|.+.|||+||+||++||++|||+|||+++|+||
T Consensus 1 aY~Ny~d~~~~-----------~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLP-----------GDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGG-----------SSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccc-----------hhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 69999998864 128999999999999999999999999999999996
No 14
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.63 E-value=3.6e-16 Score=133.06 Aligned_cols=87 Identities=29% Similarity=0.489 Sum_probs=79.4
Q ss_pred CCCCCe-eEEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccCcccccEeEEEEE
Q 015646 1 MFNLHS-VDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLV 79 (403)
Q Consensus 1 l~~m~~-i~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v~~~~vV 79 (403)
|++||+ +++|+++++++|++|+++.||+++|.++++.+.+.++.+.++++||++.+||+|+.++.||+.+|+|+++|+|
T Consensus 50 ~~~l~~i~~id~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V 129 (139)
T PF01565_consen 50 MSRLNKIIEIDPENGTVTVGAGVTWGDLYEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVV 129 (139)
T ss_dssp CTTCGCEEEEETTTTEEEEETTSBHHHHHHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEE
T ss_pred eccccccccccccceeEEEeccccchhcccccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEE
Confidence 678999 6999999999999999999999999988765444578899999999999999999999999999999999999
Q ss_pred ecCccEEe
Q 015646 80 DVSGRLLD 87 (403)
Q Consensus 80 ~a~G~~~~ 87 (403)
++||++++
T Consensus 130 ~~~G~v~~ 137 (139)
T PF01565_consen 130 LADGEVVR 137 (139)
T ss_dssp ETTSSEEE
T ss_pred cCCCcEEE
Confidence 99999985
No 15
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.59 E-value=2.2e-15 Score=142.01 Aligned_cols=135 Identities=24% Similarity=0.304 Sum_probs=115.1
Q ss_pred eEEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccCcccccEeEEEEEecCccEE
Q 015646 7 VDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLVDVSGRLL 86 (403)
Q Consensus 7 i~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v~~~~vV~a~G~~~ 86 (403)
+++|.+++||+|+|+++++||.++|-+.|+.++|. ..-...++||++.|-|+-..|.+|||-.|-+.+.|||+|||+++
T Consensus 115 Leld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~-~EldDlTvGGLinG~Gies~ShkyGlfq~~~~aYEvVladGelv 193 (543)
T KOG1262|consen 115 LELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVL-PELDDLTVGGLINGVGIESSSHKYGLFQHICTAYEVVLADGELV 193 (543)
T ss_pred HhcchhcceEEecCCccHHHHHHHhccCCceeeee-cccccceecceeeecccccccchhhhHHhhhheeEEEecCCeEE
Confidence 48999999999999999999999999999988764 56677899999999999999999999999999999999999999
Q ss_pred e--cCCCCcchhHHhhccCCCCeEEEEEEEEEEeecCceEEEEEEEecchhhHHHHHHHHHH
Q 015646 87 D--RKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRKTLEQNATEIVYRWQQ 146 (403)
Q Consensus 87 ~--~~~~~~dLfwa~rG~gg~~fGivt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (403)
+ ..++|+|||.|+..+- |++|..+.+|+|+.|+.+.+. +.+.......+..+.+.+
T Consensus 194 ~~t~dne~sdLfyaiPWSq-GTlgfLVaatiriIkvK~Yvk---ltyip~~~l~e~c~k~~e 251 (543)
T KOG1262|consen 194 RVTPDNEHSDLFYAIPWSQ-GTLGFLVAATIRIIKVKKYVK---LTYIPVHGLDEYCKKITE 251 (543)
T ss_pred EecCCcccCceEEEccccc-CchheeeeeEEEEEeccceEE---EEEEecccHHHHHHHHHh
Confidence 6 5568999999999999 899999999999999977542 333322334444555544
No 16
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.50 E-value=9.8e-14 Score=130.57 Aligned_cols=130 Identities=20% Similarity=0.271 Sum_probs=114.6
Q ss_pred CCCCCee-EEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccCcccccEeEEEEE
Q 015646 1 MFNLHSV-DVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLV 79 (403)
Q Consensus 1 l~~m~~i-~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v~~~~vV 79 (403)
|.+||+| ++|+-.+++++.+||.+.++...|.++|+.+++..|.-.+.-|||.+.+..-|..--+||-..-+|+++|||
T Consensus 140 l~~mNKi~sfDevsGil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~V 219 (511)
T KOG1232|consen 140 LGLMNKILSFDEVSGILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVV 219 (511)
T ss_pred hhhhccccccccccceEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEE
Confidence 4689998 899999999999999999999999999987777778888888999999988898888999999999999999
Q ss_pred ecCccEEe------cCCCCcchhHHhhccCCCCeEEEEEEEEEEeecCceEEEEEEEe
Q 015646 80 DVSGRLLD------RKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRK 131 (403)
Q Consensus 80 ~a~G~~~~------~~~~~~dLfwa~rG~gg~~fGivt~~~~~~~p~~~~~~~~~~~~ 131 (403)
+|||+|++ .++..-||=..+.|+. |++||||++++-+.|.|..+....+..
T Consensus 220 lp~G~vl~~~~slRKDNTgydlkhLFIGSE-GtlGVvT~vSil~~~kpksvn~af~gi 276 (511)
T KOG1232|consen 220 LPNGTVLDLLSSLRKDNTGYDLKHLFIGSE-GTLGVVTKVSILAPPKPKSVNVAFIGI 276 (511)
T ss_pred cCCCchhhhhhhhcccCccccchhheecCC-ceeeEEeeEEEeecCCCcceeEEEEcc
Confidence 99999994 2445679999999999 799999999999999998765544433
No 17
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.49 E-value=4e-14 Score=135.65 Aligned_cols=111 Identities=22% Similarity=0.216 Sum_probs=89.2
Q ss_pred CCC-CCeeEEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccC-cccccEeEEEE
Q 015646 1 MFN-LHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYG-LTVDNIVDAKL 78 (403)
Q Consensus 1 l~~-m~~i~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G-~~~D~v~~~~v 78 (403)
|++ |++|++ ++.+|+||||+.+.+|.+++.++|+ .|.+..+|+-| ++||+.+...+.|| ..+|+|++++|
T Consensus 80 l~~~l~~i~~--~~~~v~v~aG~~~~~L~~~l~~~Gl-----~gle~~~gipG-TVGGai~~NaG~~G~~~~d~v~~v~v 151 (298)
T PRK13905 80 LGKGLNEIEV--EGNRITAGAGAPLIKLARFAAEAGL-----SGLEFAAGIPG-TVGGAVFMNAGAYGGETADVLESVEV 151 (298)
T ss_pred ecCCcceEEe--cCCEEEEECCCcHHHHHHHHHHcCC-----CcchhccCCCc-chhHHHHHcCCcCceEhheeEEEEEE
Confidence 345 788754 4679999999999999999999874 24444556655 56777777777787 79999999999
Q ss_pred EecCccEEecCCCCcchhHHhhccCCC-CeEEEEEEEEEEeecC
Q 015646 79 VDVSGRLLDRKSMGEDLFWAIRGGGGA-SFGVVLAYRIKLVRVP 121 (403)
Q Consensus 79 V~a~G~~~~~~~~~~dLfwa~rG~gg~-~fGivt~~~~~~~p~~ 121 (403)
|++||++++. .+.|++|+.|+++.. .+||||+++||++|..
T Consensus 152 v~~~G~~~~~--~~~e~~~~yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 152 LDRDGEIKTL--SNEELGFGYRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred EeCCCCEEEE--EHHHcCCcCccccCCCCCEEEEEEEEEEcCCC
Confidence 9999999972 145999999998744 4899999999999974
No 18
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.46 E-value=4.5e-13 Score=129.10 Aligned_cols=127 Identities=20% Similarity=0.229 Sum_probs=108.2
Q ss_pred CCCCCee-EEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccCcccccEeEEEEE
Q 015646 1 MFNLHSV-DVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLV 79 (403)
Q Consensus 1 l~~m~~i-~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v~~~~vV 79 (403)
|+.||+| ++|++..+|||++|+++.||.+++...|+.+. ..++-..+.|||++..|.||..-+.|+......+-..++
T Consensus 98 l~~lnkVv~~dpe~~tvTV~aGirlrQLie~~~~~GlsL~-~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~ 176 (518)
T KOG4730|consen 98 LDKLNKVVEFDPELKTVTVQAGIRLRQLIEELAKLGLSLP-NAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPIT 176 (518)
T ss_pred hhhhccceeeCchhceEEeccCcCHHHHHHHHHhcCcccc-CCCceecceeeeEEecccCCCccccCcccceeEEEeeec
Confidence 4679995 99999999999999999999999998865432 257778889999999999999877777777777777788
Q ss_pred ecCccEEe-cCCCCcchhHHhhccCCCCeEEEEEEEEEEeecCceEEEEEE
Q 015646 80 DVSGRLLD-RKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQV 129 (403)
Q Consensus 80 ~a~G~~~~-~~~~~~dLfwa~rG~gg~~fGivt~~~~~~~p~~~~~~~~~~ 129 (403)
.++|.++. ++...||+|.|.+=+- |-+|||.++|+++.|.-+....+.+
T Consensus 177 ~~~G~v~~Ls~e~dpe~F~AAkvSL-G~LGVIs~VTl~~vp~Fk~s~t~~v 226 (518)
T KOG4730|consen 177 PADGFVVVLSEEKDPELFNAAKVSL-GVLGVISQVTLSVVPAFKRSLTYVV 226 (518)
T ss_pred cCCceEEEecccCCHHHHhhhhhcc-cceeEEEEEEEEEEecceeeeEEEE
Confidence 89998776 7778999999999999 7899999999999999775544433
No 19
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.42 E-value=8.2e-13 Score=132.38 Aligned_cols=140 Identities=16% Similarity=0.184 Sum_probs=110.7
Q ss_pred CCCCCee-EEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecC-CCCCccccccccccCccCccccccCcccccEeEEEE
Q 015646 1 MFNLHSV-DVDIETETAWVQTGATLGEVYYRISEKSKTHGFPA-GVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKL 78 (403)
Q Consensus 1 l~~m~~i-~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~-g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v~~~~v 78 (403)
|++||+| +|| ++++++|+||+++.+|.++|.++|+...... ++|-.++|||.+..+.-|....+||...++++. ++
T Consensus 94 l~RMNrIleID-~~~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~ 171 (564)
T PRK11183 94 TLRLDKIQLLN-NGKQVLALPGTTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQ 171 (564)
T ss_pred hhHcCCcEEEC-CCCeEEEeCCCcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hE
Confidence 5789998 788 5688999999999999999999986433322 333345788999998899999999999999999 99
Q ss_pred EecCccE-------Ee--cC---------CC----------------------------------CcchhHHh--hccCC
Q 015646 79 VDVSGRL-------LD--RK---------SM----------------------------------GEDLFWAI--RGGGG 104 (403)
Q Consensus 79 V~a~G~~-------~~--~~---------~~----------------------------------~~dLfwa~--rG~gg 104 (403)
|++||++ +. .. .. |.||-..+ .|+.
T Consensus 172 V~~dGel~lVn~lgi~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGse- 250 (564)
T PRK11183 172 IDEDGKLELVNHLGIDLGETPEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCA- 250 (564)
T ss_pred ECCCCcEEEeeccCcccCCCHHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCC-
Confidence 9999999 32 11 11 23777777 8999
Q ss_pred CCeEEEEEEEEEEeecCceEEEEEEEecchhhHHHHHHHH
Q 015646 105 ASFGVVLAYRIKLVRVPETVTVFQVRKTLEQNATEIVYRW 144 (403)
Q Consensus 105 ~~fGivt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (403)
|.+||+ +++++|+|.|+....+.+.++..+.+.++....
T Consensus 251 GkLgV~-avrLdtfp~p~~~~vf~ig~n~~~~~~~~rr~i 289 (564)
T PRK11183 251 GKLAVF-AVRLDTFPAEKNTQVFYIGTNDPAVLTEIRRHI 289 (564)
T ss_pred ceEEEE-EEEeccccCCCcceEEEEeCCCHHHHHHHHHHH
Confidence 799999 999999999998888878777655555555443
No 20
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.34 E-value=3.6e-12 Score=120.35 Aligned_cols=135 Identities=21% Similarity=0.259 Sum_probs=115.6
Q ss_pred CCCCCee-EEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccCcccccEeEEEEE
Q 015646 1 MFNLHSV-DVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLV 79 (403)
Q Consensus 1 l~~m~~i-~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v~~~~vV 79 (403)
++.||+| =+|.++-|+.+++|++-++|.+.|.+.|+....-+-+-.-.++||++.....|.--+.||-.-|-|+-+++|
T Consensus 215 tsqmnriLWidreNLT~~~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mV 294 (613)
T KOG1233|consen 215 TSQMNRILWIDRENLTCRAEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMV 294 (613)
T ss_pred HHhhhheeEeccccceEEEecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEee
Confidence 4689997 699999999999999999999999998754333334444457999999999999999999999999999999
Q ss_pred ecCccEEe-----cCCCCcchhHHhhccCCCCeEEEEEEEEEEeecCceEEEEEEEecchhh
Q 015646 80 DVSGRLLD-----RKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVPETVTVFQVRKTLEQN 136 (403)
Q Consensus 80 ~a~G~~~~-----~~~~~~dLfwa~rG~gg~~fGivt~~~~~~~p~~~~~~~~~~~~~~~~~ 136 (403)
++.|.|-. .-+..||+-.-+.|+. |++||||++++|+.|+|+.....++.|+..+.
T Consensus 295 tP~Giiek~Cq~PRmS~GPDihh~IlGSE-GTLGVitEvtiKirPiPe~~ryGS~aFPNFEq 355 (613)
T KOG1233|consen 295 TPKGIIEKQCQVPRMSSGPDIHHIILGSE-GTLGVITEVTIKIRPIPEVKRYGSFAFPNFEQ 355 (613)
T ss_pred cCcchhhhhhcCCcccCCCCcceEEeccC-cceeEEEEEEEEEeechhhhhcCccccCcHHH
Confidence 99998874 2346899999999999 89999999999999999876667777875444
No 21
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.02 E-value=9.6e-10 Score=107.25 Aligned_cols=110 Identities=23% Similarity=0.232 Sum_probs=89.1
Q ss_pred CCeeEEeCCCCEEEEcCCCCHHHHHHHHHhcCC-cceecCCCCCccccccccccCccCccccccCcccccEeEEEEEecC
Q 015646 4 LHSVDVDIETETAWVQTGATLGEVYYRISEKSK-THGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLVDVS 82 (403)
Q Consensus 4 m~~i~~d~~~~~v~v~~G~~~~~v~~~l~~~~~-~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v~~~~vV~a~ 82 (403)
+++|+++.+..+|+||+|+.|.+|.+.+.++|+ ++-...|.+.+||-+.+.-.|++|. -..|.|.++++|+.+
T Consensus 84 ~~~i~i~~~~~~v~vgAG~~~~~l~~~a~~~GL~GlE~laGIPGTVGGAv~mNaGayG~------ei~D~l~sV~vvd~~ 157 (363)
T PRK13903 84 TRGVTVDCGGGLVRAEAGAVWDDVVARTVEAGLGGLECLSGIPGSAGATPVQNVGAYGQ------EVSDTITRVRLLDRR 157 (363)
T ss_pred CCcEEEeCCCCEEEEEcCCCHHHHHHHHHHcCCccccccCCCCcchhhHhhcCCChhHH------HHhhhEeEEEEEECC
Confidence 577888766789999999999999999999885 3435678888887766666777665 568999999999854
Q ss_pred -ccEEecCCCCcchhHHhhcc--CCCCeEEEEEEEEEEeecC
Q 015646 83 -GRLLDRKSMGEDLFWAIRGG--GGASFGVVLAYRIKLVRVP 121 (403)
Q Consensus 83 -G~~~~~~~~~~dLfwa~rG~--gg~~fGivt~~~~~~~p~~ 121 (403)
|++++-. +.|++|+.|++ .+++++|||+++||++|..
T Consensus 158 ~G~~~~~~--~~el~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 158 TGEVRWVP--AADLGFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred CCEEEEEE--HHHcceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 9999722 57999999996 2246899999999999873
No 22
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.01 E-value=7.3e-10 Score=106.05 Aligned_cols=106 Identities=17% Similarity=0.131 Sum_probs=85.3
Q ss_pred CCeeEEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCcccc-ccCcccccEeEEEEEecC
Q 015646 4 LHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMR-KYGLTVDNIVDAKLVDVS 82 (403)
Q Consensus 4 m~~i~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~-~~G~~~D~v~~~~vV~a~ 82 (403)
++.|++ ++.+++||||+.+.+|.+++.++|+. |.+..+|+.| ++||+....++ +||.++|+|+++++|++|
T Consensus 89 ~~~i~~--~~~~v~v~AG~~~~~L~~~~~~~GL~-----GlE~l~gIPG-TvGGav~mNaGa~ggei~d~v~~v~vv~~~ 160 (302)
T PRK14652 89 FPGEST--DGGRLVLGAGAPISRLPARAHAHGLV-----GMEFLAGIPG-TLGGAVAMNAGTKLGEMKDVVTAVELATAD 160 (302)
T ss_pred cceEEe--cCCEEEEECCCcHHHHHHHHHHcCCc-----ccccccCCCc-chhHHHHHcCCCCceEhhheEEEEEEECCC
Confidence 444544 35699999999999999999998742 7778888877 88888888875 788899999999999999
Q ss_pred ccEEecCCCCcchhHHhhccC-CCCeEEEEEEEEEEeecC
Q 015646 83 GRLLDRKSMGEDLFWAIRGGG-GASFGVVLAYRIKLVRVP 121 (403)
Q Consensus 83 G~~~~~~~~~~dLfwa~rG~g-g~~fGivt~~~~~~~p~~ 121 (403)
| +++- ...|+.|+.|++. +. .||||+++||++|..
T Consensus 161 G-~~~~--~~~e~~f~YR~s~~~~-~~II~~a~~~L~~~~ 196 (302)
T PRK14652 161 G-AGFV--PAAALGYAYRTCRLPP-GAVITRVEVRLRPGD 196 (302)
T ss_pred C-cEEe--ehhhcCcccceeccCC-CeEEEEEEEEEecCC
Confidence 9 4431 1369999999964 22 389999999999854
No 23
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=98.92 E-value=2.5e-09 Score=101.63 Aligned_cols=110 Identities=19% Similarity=0.183 Sum_probs=90.7
Q ss_pred CCCCCeeEEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccCcccc-cEeEEEEE
Q 015646 1 MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVD-NIVDAKLV 79 (403)
Q Consensus 1 l~~m~~i~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~~~D-~v~~~~vV 79 (403)
|++|+++.+|+ +.+++||||+.+.+|.+++.++|+ .|.+..+|+.| ++||+.+..++.||..++ .|++++||
T Consensus 62 l~~~~~~~~~~-~~~v~v~aG~~~~~l~~~~~~~Gl-----~GlE~l~giPG-tvGGai~mNAGayG~~i~d~l~~v~vv 134 (284)
T TIGR00179 62 LGKGIDIEDDE-GEYVHVGGGENWHKLVKYALKNGL-----SGLEFLAGIPG-TVGGAVIMNAGAYGVEISEVLVYATIL 134 (284)
T ss_pred CCCCceEEEec-CCEEEEEcCCcHHHHHHHHHHCCC-----cccccCCCCCc-hHHHHHHHhcccchhehhheEEEEEEE
Confidence 46788887776 679999999999999999999864 38888899987 799999999999999997 57999999
Q ss_pred ecCccEEecCCCCcchhHHhhccCC-CCe-EEEEEEEEEEee
Q 015646 80 DVSGRLLDRKSMGEDLFWAIRGGGG-ASF-GVVLAYRIKLVR 119 (403)
Q Consensus 80 ~a~G~~~~~~~~~~dLfwa~rG~gg-~~f-Givt~~~~~~~p 119 (403)
++||++++-. +.|+-|+.|-+.= ... .||+++++++.+
T Consensus 135 ~~~G~~~~~~--~~~~~f~YR~S~f~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 135 LATGKTEWLT--NEQLGFGYRTSIFQHKYVGLVLKAEFQLTL 174 (284)
T ss_pred eCCCCEEEEE--HHHccccCCccccCCCCcEEEEEEEEEecc
Confidence 9999999621 3588888887641 112 699999999844
No 24
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.92 E-value=2.1e-09 Score=103.12 Aligned_cols=110 Identities=22% Similarity=0.199 Sum_probs=88.1
Q ss_pred CCCCCeeEEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccC-cccccEeEEEEE
Q 015646 1 MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYG-LTVDNIVDAKLV 79 (403)
Q Consensus 1 l~~m~~i~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G-~~~D~v~~~~vV 79 (403)
|++|++|+++. .+++||||+.+.+|.+.+.++|+ .|....+|+-| +.||+.....+.|| .++|+|++++||
T Consensus 86 l~~l~~i~~~~--~~v~v~aG~~~~~l~~~~~~~Gl-----~GlE~~~gIPG-tVGGav~mNaGayGg~i~D~l~~v~vv 157 (307)
T PRK13906 86 LLSLDHIEVSD--DAIIAGSGAAIIDVSRVARDYAL-----TGLEFACGIPG-SIGGAVYMNAGAYGGEVKDCIDYALCV 157 (307)
T ss_pred ecCccceEEeC--CEEEEECCCcHHHHHHHHHHcCC-----ccchhhcCCCc-cHhHHHHhhCCcchhhhhhheeEEEEE
Confidence 45789998764 58999999999999999998864 25566678877 78888888888895 889999999999
Q ss_pred ecCccEEecCCCCcchhHHhhccCCC-CeEEEEEEEEEEeec
Q 015646 80 DVSGRLLDRKSMGEDLFWAIRGGGGA-SFGVVLAYRIKLVRV 120 (403)
Q Consensus 80 ~a~G~~~~~~~~~~dLfwa~rG~gg~-~fGivt~~~~~~~p~ 120 (403)
++||++++-. ..|+.|+.|-+.=. .--||++++||+.|.
T Consensus 158 ~~~G~~~~~~--~~e~~f~YR~S~~~~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 158 NEQGSLIKLT--TKELELDYRNSIIQKEHLVVLEAAFTLAPG 197 (307)
T ss_pred eCCCCEEEEE--HHHccCcCCcccCCCCCEEEEEEEEEECCC
Confidence 9999999621 35888888876511 124999999999863
No 25
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.89 E-value=4.4e-09 Score=100.90 Aligned_cols=109 Identities=20% Similarity=0.225 Sum_probs=79.8
Q ss_pred CCCCCeeEEeCCCCEEEEcCCCCHHHHHHHHHhcCC-cceecCCCCCccccccccccCccCccccccC-cccccEeEEEE
Q 015646 1 MFNLHSVDVDIETETAWVQTGATLGEVYYRISEKSK-THGFPAGVCPTVGVGGHIGGGGYGNMMRKYG-LTVDNIVDAKL 78 (403)
Q Consensus 1 l~~m~~i~~d~~~~~v~v~~G~~~~~v~~~l~~~~~-~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G-~~~D~v~~~~v 78 (403)
|++|++|+++ ..+++||+|+.+.+|.+.+.++|+ ++..+.|...+ |||.+. ...+.|| ...|.+.+++|
T Consensus 86 l~~l~~i~~~--~~~v~v~aG~~~~~L~~~~~~~gl~Gle~~~giPGt--VGGav~-----~NAGayG~~~~dvl~~v~v 156 (305)
T PRK12436 86 LIHITGVTVT--GTTIVAQCGAAIIDVSRIALDHNLTGLEFACGIPGS--VGGALY-----MNAGAYGGEISFVLTEAVV 156 (305)
T ss_pred eCCcCcEEEe--CCEEEEEeCCcHHHHHHHHHHcCCccchhhcCCccc--hhHHHH-----hcCccchhehheeeeEEEE
Confidence 4568888776 468999999999999999999875 22233444444 334333 3333466 66688889999
Q ss_pred EecCccEEecCCCCcchhHHhhccC-CCCeEEEEEEEEEEeec
Q 015646 79 VDVSGRLLDRKSMGEDLFWAIRGGG-GASFGVVLAYRIKLVRV 120 (403)
Q Consensus 79 V~a~G~~~~~~~~~~dLfwa~rG~g-g~~fGivt~~~~~~~p~ 120 (403)
|++||++++-. +.|+.|+.|.+. ..+..||++++||+.+.
T Consensus 157 v~~~G~v~~~~--~~e~~f~YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 157 MTGDGELRTLT--KEAFEFGYRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred EeCCCCEEEEE--HHHhcCcCCCCcCCCCCEEEEEEEEEEcCC
Confidence 99999999721 468999999983 13467999999999875
No 26
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.60 E-value=1.2e-07 Score=90.56 Aligned_cols=107 Identities=25% Similarity=0.275 Sum_probs=83.9
Q ss_pred eeEEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccC-ccCccccccCcccccEeEEEEEecCcc
Q 015646 6 SVDVDIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGG-GYGNMMRKYGLTVDNIVDAKLVDVSGR 84 (403)
Q Consensus 6 ~i~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~gg-G~g~~s~~~G~~~D~v~~~~vV~a~G~ 84 (403)
++..+.+..+++|++|+.|.+|...+.++|+ .|-...+||.| ++|| .++-.....+..+|.|.++++++.+|+
T Consensus 76 ~i~~~~~~~~v~v~AG~~~~~l~~~~~~~GL-----~GlE~l~GIPG-TvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~ 149 (295)
T PRK14649 76 ELHEHGDTAEVWVEAGAPMAGTARRLAAQGW-----AGLEWAEGLPG-TIGGAIYGNAGCYGGDTATVLIRAWLLLNGSE 149 (295)
T ss_pred EEEEeCCcEEEEEEcCCcHHHHHHHHHHcCC-----ccccccCCCCc-chhHHHHhhccccceEhheeEEEEEEEeCCCC
Confidence 5666665559999999999999999999874 25667889988 6666 777777777889999999999999999
Q ss_pred EEecCCCCcchhHHhhccCCCC---------eEEEEEEEEEEeec
Q 015646 85 LLDRKSMGEDLFWAIRGGGGAS---------FGVVLAYRIKLVRV 120 (403)
Q Consensus 85 ~~~~~~~~~dLfwa~rG~gg~~---------fGivt~~~~~~~p~ 120 (403)
+++-. +.||+|+.|-+.=-. --||++++|++.|.
T Consensus 150 ~~~~~--~~el~f~YR~S~~~~~~~~~~~~~~~ii~~~~~~l~~~ 192 (295)
T PRK14649 150 CVEWS--VHDFAYGYRTSVLKQLRADGITWRPPLVLAARFRLHRD 192 (295)
T ss_pred EEEEe--HHHcCcccceeecccccccccccCCeEEEEEEEEECCC
Confidence 98621 349999988763110 12889999988765
No 27
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.09 E-value=1.2e-05 Score=76.80 Aligned_cols=107 Identities=20% Similarity=0.314 Sum_probs=74.5
Q ss_pred CCCCeeEEeCCCCEEEEcCCCCHHHHHHHHHhcCCc-ceecCCCCCccccccccccCccCccccccCc-ccccEeEEEEE
Q 015646 2 FNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKT-HGFPAGVCPTVGVGGHIGGGGYGNMMRKYGL-TVDNIVDAKLV 79 (403)
Q Consensus 2 ~~m~~i~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~-~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~-~~D~v~~~~vV 79 (403)
++|+.|+++. .+++++||+.+.+|...+.++|+. +-...|- |. +|||.+..+ .+.||. ..|.|.+++++
T Consensus 83 ~~~~~i~i~~--~~v~v~AG~~l~~L~~~~~~~GL~GlE~l~gI-PG-TVGGAv~mN-----AGayG~ei~d~l~~V~~~ 153 (297)
T PRK14653 83 ERLDDIFVDN--DKIICESGLSLKKLCLVAAKNGLSGFENAYGI-PG-SVGGAVYMN-----AGAYGWETAENIVEVVAY 153 (297)
T ss_pred CCcCceEEeC--CEEEEeCCCcHHHHHHHHHHCCCcchhhhcCC-ch-hHHHHHHHh-----CccCchhhheeEEEEEEE
Confidence 4588898873 589999999999999999998862 1111122 11 155555433 344888 88999999999
Q ss_pred ecCccEEecCCCCcchhHHhhccC-C--CCeEEEEEEEEEEeecC
Q 015646 80 DVSGRLLDRKSMGEDLFWAIRGGG-G--ASFGVVLAYRIKLVRVP 121 (403)
Q Consensus 80 ~a~G~~~~~~~~~~dLfwa~rG~g-g--~~fGivt~~~~~~~p~~ 121 (403)
+ +|++++-. +.|+-|..|-.. + +.+ |||+++||+.|..
T Consensus 154 d-~g~v~~~~--~~e~~f~YR~S~~~~~~~~-iI~~a~f~L~~~~ 194 (297)
T PRK14653 154 D-GKKIIRLG--KNEIKFSYRNSIFKEEKDL-IILRVTFKLKKGN 194 (297)
T ss_pred C-CCEEEEEc--hhhccccCccccCCCCCcE-EEEEEEEEEecCC
Confidence 9 78877521 236677666543 1 245 9999999999853
No 28
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=97.33 E-value=0.00067 Score=64.80 Aligned_cols=108 Identities=14% Similarity=0.160 Sum_probs=74.7
Q ss_pred CCCeeEEeCCCCEEEEcCCCCHHHHHHHHHhcCCc-ceecCCCCCccccccccccCccCccccccCc-ccccEeEEEEEe
Q 015646 3 NLHSVDVDIETETAWVQTGATLGEVYYRISEKSKT-HGFPAGVCPTVGVGGHIGGGGYGNMMRKYGL-TVDNIVDAKLVD 80 (403)
Q Consensus 3 ~m~~i~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~-~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~-~~D~v~~~~vV~ 80 (403)
+|+.|+++. ..+++++|+.|.++...+.++|+. +-...|--.| |||.+. ...+.||. ..|.|.++++++
T Consensus 85 ~~~~i~~~~--~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGT--VGGAv~-----mNAGayG~ei~d~l~sV~~~d 155 (302)
T PRK14650 85 HLNKIEIHD--NQIVAECGTNFEDLCKFALQNELSGLEFIYGLPGT--LGGAIW-----MNARCFGNEISEILDKITFID 155 (302)
T ss_pred CcCcEEEeC--CEEEEEeCCcHHHHHHHHHHcCCchhhhhcCCCcc--hhHHHH-----hhCCccccchheeEEEEEEEE
Confidence 478888764 479999999999999999998752 2112222222 333333 22345664 559999999999
Q ss_pred cCccEEecCCCCcchhHHhhccCCC-CeEEEEEEEEEEeecC
Q 015646 81 VSGRLLDRKSMGEDLFWAIRGGGGA-SFGVVLAYRIKLVRVP 121 (403)
Q Consensus 81 a~G~~~~~~~~~~dLfwa~rG~gg~-~fGivt~~~~~~~p~~ 121 (403)
.+|++++-. ..|+-|+.|-+.=. .=-||++++|++.|..
T Consensus 156 ~~g~~~~~~--~~e~~f~YR~S~f~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 156 EKGKTICKK--FKKEEFKYKISPFQNKNTFILKATLNLKKGN 195 (302)
T ss_pred CCCCEEEEE--HHHcCcccccccCCCCCEEEEEEEEEEcCCC
Confidence 999998621 35788888876511 1149999999998764
No 29
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.27 E-value=0.0014 Score=61.89 Aligned_cols=109 Identities=22% Similarity=0.254 Sum_probs=76.5
Q ss_pred CCCeeEEeCCCCEEEEcCCCCHHHHHHHHHhcCCc-ceecCCCCCccccccccccCccCccccccCcc-cccEeEEEEEe
Q 015646 3 NLHSVDVDIETETAWVQTGATLGEVYYRISEKSKT-HGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLT-VDNIVDAKLVD 80 (403)
Q Consensus 3 ~m~~i~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~-~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~~-~D~v~~~~vV~ 80 (403)
+++.++++.+...+++++|+.|.+|.+.+.+++.. +-...|--.| |||. .=...+.||.- .|.+.++++++
T Consensus 72 ~~~~~~~~~~~~~i~a~aG~~~~~l~~~~~~~gl~GlE~l~gIPGs--vGga-----v~mNaGAyG~Ei~d~~~~v~~ld 144 (291)
T COG0812 72 KLNFIEIEGDDGLIEAGAGAPWHDLVRFALENGLSGLEFLAGIPGS--VGGA-----VIMNAGAYGVEISDVLVSVEVLD 144 (291)
T ss_pred cccceeeeccCCeEEEccCCcHHHHHHHHHHcCCcchhhhcCCCcc--cchh-----hhccCcccccchheeEEEEEEEc
Confidence 45567777777799999999999999999988752 2112222222 2232 22233456654 58999999999
Q ss_pred cCccEEecCCCCcchhHHhhccCC-CCeEEEEEEEEEEeec
Q 015646 81 VSGRLLDRKSMGEDLFWAIRGGGG-ASFGVVLAYRIKLVRV 120 (403)
Q Consensus 81 a~G~~~~~~~~~~dLfwa~rG~gg-~~fGivt~~~~~~~p~ 120 (403)
.+|++.+- ++.||-|+.|-+.= ....||++++||+.|-
T Consensus 145 ~~G~~~~l--~~~el~f~YR~S~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 145 RDGEVRWL--SAEELGFGYRTSPFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred CCCCEEEE--EHHHhCcccccCcCCCCCEEEEEEEEEeCCC
Confidence 99999962 14688898888761 1228999999999876
No 30
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=97.18 E-value=0.00085 Score=65.06 Aligned_cols=110 Identities=13% Similarity=0.121 Sum_probs=73.1
Q ss_pred CCCeeEEe-CCC--CEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccCc-ccccEeEEEE
Q 015646 3 NLHSVDVD-IET--ETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGL-TVDNIVDAKL 78 (403)
Q Consensus 3 ~m~~i~~d-~~~--~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~-~~D~v~~~~v 78 (403)
+|++++++ .+. .++++++|+.|.+|...+.++|.. |--..+||-|- .||..=...+.||. ..|.|.+++|
T Consensus 70 ~~~~~~~~~~~~~~~~v~a~AG~~~~~l~~~~~~~gl~-----GlE~l~gIPGT-VGGAv~mNaGayG~ei~d~l~~V~v 143 (334)
T PRK00046 70 RIKGIEVLSEDDDAWYLHVGAGENWHDLVLWTLQQGMP-----GLENLALIPGT-VGAAPIQNIGAYGVELKDVCDYVEA 143 (334)
T ss_pred cCCceEEEecCCCeEEEEEEcCCcHHHHHHHHHHcCch-----hhHHhcCCCcc-hhHHHHhcCCcCcccHheeEEEEEE
Confidence 36778773 222 289999999999999999998752 22223333221 12222223455664 4589999999
Q ss_pred EecC-ccEEecCCCCcchhHHhhccCC-CC---eEEEEEEEEEEeec
Q 015646 79 VDVS-GRLLDRKSMGEDLFWAIRGGGG-AS---FGVVLAYRIKLVRV 120 (403)
Q Consensus 79 V~a~-G~~~~~~~~~~dLfwa~rG~gg-~~---fGivt~~~~~~~p~ 120 (403)
++.+ |++++-. +.|+.|+.|-+.= .+ =-||++++|++.|-
T Consensus 144 ~d~~~g~~~~~~--~~e~~f~YR~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 144 LDLATGEFVRLS--AAECRFGYRDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred EECCCCcEEEEE--HHHcCcccccccCCCCCcCCEEEEEEEEEecCC
Confidence 9987 9988621 3588888887630 11 24999999999884
No 31
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.65 E-value=0.0062 Score=59.26 Aligned_cols=113 Identities=16% Similarity=0.194 Sum_probs=71.4
Q ss_pred CCCeeEE---eCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccCc-ccccEeEEEE
Q 015646 3 NLHSVDV---DIETETAWVQTGATLGEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGL-TVDNIVDAKL 78 (403)
Q Consensus 3 ~m~~i~~---d~~~~~v~v~~G~~~~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~-~~D~v~~~~v 78 (403)
+|+.+++ +.+...+++++|+.|.+|...+.++|+. |--..+||-|- .||..=...+.||. ..|.|.++++
T Consensus 81 ~~~~i~i~~~~~~~~~v~agAG~~~~~Lv~~~~~~gl~-----GlE~laGIPGT-VGGAv~mNAGAyG~ei~d~l~~V~v 154 (354)
T PRK14648 81 RFRSLHTQTQRDGSVLVHAGAGLPVAALLAFCAHHALR-----GLETFAGLPGS-VGGAAYMNARCYGRAIADCFHSART 154 (354)
T ss_pred CcCceEEeeccCCcEEEEEEeCCcHHHHHHHHHHcCCc-----chhhhcCCCcc-hhhHhhhcCCccceEhhheEEEEEE
Confidence 4677765 2222479999999999999999988752 33333333221 22333333456775 4589999999
Q ss_pred E--------------------ecCccEEe-----------cCCCCcchhHHhhccCCC---------CeEEEEEEEEEEe
Q 015646 79 V--------------------DVSGRLLD-----------RKSMGEDLFWAIRGGGGA---------SFGVVLAYRIKLV 118 (403)
Q Consensus 79 V--------------------~a~G~~~~-----------~~~~~~dLfwa~rG~gg~---------~fGivt~~~~~~~ 118 (403)
+ +.+|+++. ..-.+.|+-|+.|-+.=- +--||++++|++.
T Consensus 155 ~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~ 234 (354)
T PRK14648 155 LVLHPVRSRAKELPEVRKNAQDKRGECLGLDGGPFTCSSFQTVFARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLT 234 (354)
T ss_pred EeccCcccccccccccccccccCCCceecccccccccccceEecHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEc
Confidence 9 56677620 011235777887776410 0239999999998
Q ss_pred ecC
Q 015646 119 RVP 121 (403)
Q Consensus 119 p~~ 121 (403)
|..
T Consensus 235 ~~~ 237 (354)
T PRK14648 235 PGN 237 (354)
T ss_pred CCC
Confidence 753
No 32
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.35 E-value=0.014 Score=54.60 Aligned_cols=102 Identities=19% Similarity=0.232 Sum_probs=69.5
Q ss_pred CCCCeeEEeCCCCEEEEcCCCCHHHHHHHHHhcCCc-ceecCCCCCccccccccccCccCccccccCc-ccccEeEEEEE
Q 015646 2 FNLHSVDVDIETETAWVQTGATLGEVYYRISEKSKT-HGFPAGVCPTVGVGGHIGGGGYGNMMRKYGL-TVDNIVDAKLV 79 (403)
Q Consensus 2 ~~m~~i~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~-~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~-~~D~v~~~~vV 79 (403)
++|+.++++. .++++++|+.+.++...+.+++.. +-...|--.| |||.+..+ .+.||. ..|.|.+++++
T Consensus 57 ~~~~~~~~~~--~~v~~~AG~~l~~l~~~~~~~gl~GlE~l~gIPGt--VGGAv~mN-----aGa~g~ei~d~l~~V~~~ 127 (257)
T PRK13904 57 KNFDYIKIDG--ECLEIGGATKSGKIFNYAKKNNLGGFEFLGKLPGT--LGGLVKMN-----AGLKEYEISNNLESICTN 127 (257)
T ss_pred cCcCeEEEeC--CEEEEEcCCcHHHHHHHHHHCCCchhhhhcCCCcc--HHHHHHhc-----CCcCccchheeEEEEEEE
Confidence 3578888754 479999999999999999998752 2222222222 44544422 334553 45899999999
Q ss_pred ecCccEEecCCCCcchhHHhhccCCCCeEEEEEEEEEEeecC
Q 015646 80 DVSGRLLDRKSMGEDLFWAIRGGGGASFGVVLAYRIKLVRVP 121 (403)
Q Consensus 80 ~a~G~~~~~~~~~~dLfwa~rG~gg~~fGivt~~~~~~~p~~ 121 (403)
+ |+ +. ..|+.|+.|-+. =. .||++++||+.|..
T Consensus 128 ~--~~-~~----~~e~~f~YR~S~-~~-~iIl~a~f~l~~~~ 160 (257)
T PRK13904 128 G--GW-IE----KEDIGFGYRSSG-IN-GVILEARFKKTHGF 160 (257)
T ss_pred e--eE-Ee----HHHCcccccCcC-CC-cEEEEEEEEECCCC
Confidence 8 52 22 457888888764 22 49999999999854
No 33
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.33 E-value=0.014 Score=55.07 Aligned_cols=94 Identities=21% Similarity=0.216 Sum_probs=63.4
Q ss_pred EEcCCCCHHHHHHHHHhcCCc-ceecCCCCCccccccccccCccCccccccCc-ccccEeEEEEEecCccEEecCCCCcc
Q 015646 17 WVQTGATLGEVYYRISEKSKT-HGFPAGVCPTVGVGGHIGGGGYGNMMRKYGL-TVDNIVDAKLVDVSGRLLDRKSMGED 94 (403)
Q Consensus 17 ~v~~G~~~~~v~~~l~~~~~~-~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~-~~D~v~~~~vV~a~G~~~~~~~~~~d 94 (403)
++++|+.|.++...+.++|+. +-...|--.| |||.+.. ..+.||. ..|.|.++++++ +|++++-. +.|
T Consensus 75 ~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGT--VGGAv~m-----NaGayG~ei~d~l~~V~~~~-~g~~~~~~--~~e 144 (273)
T PRK14651 75 WVGGGVPLPGLVRRAARLGLSGLEGLVGIPAQ--VGGAVKM-----NAGTRFGEMADALHTVEIVH-DGGFHQYS--PDE 144 (273)
T ss_pred EEECCCcHHHHHHHHHHCCCcchhhhcCCCcc--hhhHHHh-----hCCccccChheeEEEEEEEE-CCCEEEEE--HHH
Confidence 699999999999999998752 2112222222 3343332 2345664 559999999997 89988621 358
Q ss_pred hhHHhhccCCCCeEEEEEEEEEEeec
Q 015646 95 LFWAIRGGGGASFGVVLAYRIKLVRV 120 (403)
Q Consensus 95 Lfwa~rG~gg~~fGivt~~~~~~~p~ 120 (403)
+.|+.|-+.=..=-||++++||+.|-
T Consensus 145 ~~f~YR~S~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 145 LGFGYRHSGLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred ccccccccCCCCCEEEEEEEEEECCC
Confidence 88888876411113999999999875
No 34
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=96.01 E-value=0.0092 Score=56.22 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=26.0
Q ss_pred HhhhhhhccccchHHHHHhhhhcCCCCCccCCCCc
Q 015646 364 AKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNEQSI 398 (403)
Q Consensus 364 ~~~~~~~y~G~n~~rL~~iK~kyDP~n~F~~~~~I 398 (403)
.++|. ..||+.++|+++.|++|||.+++..+|.|
T Consensus 247 ~~dW~-~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 247 QEDWR-RHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHHHH-HHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHHHH-HHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 35896 57899999999999999999999999988
No 35
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=95.81 E-value=0.0075 Score=55.59 Aligned_cols=113 Identities=15% Similarity=0.172 Sum_probs=63.1
Q ss_pred CCCHhHHHHHHHHHHhCCCcEEEEEeCCCccCCCCCCCCCcccccCceEEEEEEeEeCCCCchhhHHHHHHHHHHHhccc
Q 015646 253 PIPKNGLEFIWKRMIELETPQMIFNPYGGKMAEIPSTATPFPHRAGNLWKIQYVTNWNEPGTDAANRYLNLTRKLYGYMT 332 (403)
Q Consensus 253 ~~~~~~i~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~tafp~R~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 332 (403)
.++.+.+..+++.+.+.- .+.......|.|-.....|+.+.. ....++..+...++++++.+.+.
T Consensus 134 ~vp~~~l~~~~~~~~~~~-------------~~~~~~~~~~gH~~~g~~h~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 198 (248)
T PF02913_consen 134 AVPPSRLPEFLREIRALL-------------REYGLEVCHFGHAGDGNLHLYILF--DPRDPEEPERAEALWDELYELVL 198 (248)
T ss_dssp ESCHHHHHHHHHHHHHHH-------------HHCTEEEEEEEEEEECEEEEEEEE--ETTSHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHhhhhhh-------------hhccccccceEEccCCeEEEEeec--ccchHHHHHHHHHHHHHHHHHHH
Confidence 367778888888775520 000011122334222345554443 22222455667778888777665
Q ss_pred ccccCCCCcccccccCCccCCCCCCCchhHHHhhhhhhcccc-chHHHHHhhhhcCCCCCccCCC
Q 015646 333 PFVSKNPRQAFFNYRDIDLGINHNGKASFEEAKAYGIKYFLG-NFNRLVKIKTKVDPGNFFRNEQ 396 (403)
Q Consensus 333 ~~~~~~~~g~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~y~G~-n~~rL~~iK~kyDP~n~F~~~~ 396 (403)
.+ +|+-.-++.... ....|-...+|+ .+.-+++||+.+||+|+++.+.
T Consensus 199 ~~-----gG~is~eHG~G~-----------~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilNPGk 247 (248)
T PF02913_consen 199 EL-----GGSISAEHGIGK-----------LKKPYLEEEYGPAALRLMRAIKQAFDPNGILNPGK 247 (248)
T ss_dssp HT-----T-BBSSSSGGGH-----------HHHHHHCHHCHHHHHHHHHHHHHHH-TTS-BSTTG
T ss_pred hc-----ccccccccchhh-----------hhHHHHHHhcchHHHHHHHHhhhccCCccCCCCCC
Confidence 54 344444433321 123566667776 5999999999999999999763
No 36
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=91.14 E-value=0.48 Score=43.93 Aligned_cols=28 Identities=29% Similarity=0.538 Sum_probs=23.4
Q ss_pred hhhhhccccchHHHHHhhhhcCCCCCccCC
Q 015646 366 AYGIKYFLGNFNRLVKIKTKVDPGNFFRNE 395 (403)
Q Consensus 366 ~~~~~y~G~n~~rL~~iK~kyDP~n~F~~~ 395 (403)
.....| .++++..+||+++||+++|.++
T Consensus 170 ~l~~lY--Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 170 GAIAKY--KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred HHHHHC--cCHHHHHHHHHHhCCCCccCCH
Confidence 444555 7899999999999999999875
No 37
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=87.82 E-value=0.95 Score=42.38 Aligned_cols=28 Identities=21% Similarity=0.505 Sum_probs=19.8
Q ss_pred hhhhhccccchHHHHHhhhhcCCCCCccCC
Q 015646 366 AYGIKYFLGNFNRLVKIKTKVDPGNFFRNE 395 (403)
Q Consensus 366 ~~~~~y~G~n~~rL~~iK~kyDP~n~F~~~ 395 (403)
+..+.| +++++..++|+++||+++|.++
T Consensus 227 ~l~~~Y--p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 227 QLRKLY--PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp HHHHT---TTHHHHHHHHHHH-TT-TT--H
T ss_pred HHHHHC--cCHHHHHHHHHHhCCCCCCCCH
Confidence 455555 8999999999999999999864
No 38
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=83.96 E-value=2.3 Score=44.48 Aligned_cols=28 Identities=32% Similarity=0.542 Sum_probs=23.8
Q ss_pred hhhhhccccchHHHHHhhhhcCCCCCccCC
Q 015646 366 AYGIKYFLGNFNRLVKIKTKVDPGNFFRNE 395 (403)
Q Consensus 366 ~~~~~y~G~n~~rL~~iK~kyDP~n~F~~~ 395 (403)
+..+.| .+++++++||+++||+++|.++
T Consensus 476 ~l~~~Y--P~~~dF~alR~~~DP~g~F~N~ 503 (557)
T TIGR01677 476 GVIRKY--PNADKFLKVKDSYDPKGLFSSE 503 (557)
T ss_pred HHHHhC--CCHHHHHHHHHhcCCCCccCCH
Confidence 455565 6999999999999999999875
No 39
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=55.83 E-value=5.8 Score=39.80 Aligned_cols=20 Identities=25% Similarity=0.765 Sum_probs=18.9
Q ss_pred cchHHHHHhhhhcCCCCCcc
Q 015646 374 GNFNRLVKIKTKVDPGNFFR 393 (403)
Q Consensus 374 ~n~~rL~~iK~kyDP~n~F~ 393 (403)
.|+++..++|+++||.++|.
T Consensus 485 ~n~~~flkvr~~lDP~~lFs 504 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFS 504 (518)
T ss_pred cChHHHHHHHHhcCccchhh
Confidence 79999999999999999994
No 40
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=54.89 E-value=7.8 Score=38.12 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=18.9
Q ss_pred cc-hHHHHHhhhhcCCCCCccCC
Q 015646 374 GN-FNRLVKIKTKVDPGNFFRNE 395 (403)
Q Consensus 374 ~n-~~rL~~iK~kyDP~n~F~~~ 395 (403)
.+ .+-.++||+++||.++|+..
T Consensus 324 ~~~~~l~~~lK~~fDP~~ilnpg 346 (352)
T PRK11282 324 APLLRIHRRLKQAFDPAGIFNPG 346 (352)
T ss_pred HHHHHHHHHHHHhcCcccCCCCC
Confidence 44 67889999999999999865
No 41
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=35.45 E-value=21 Score=37.28 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=21.4
Q ss_pred hhhhccccchHHHHHhhhhcCCCCCccCCC
Q 015646 367 YGIKYFLGNFNRLVKIKTKVDPGNFFRNEQ 396 (403)
Q Consensus 367 ~~~~y~G~n~~rL~~iK~kyDP~n~F~~~~ 396 (403)
|.+.| . +++..+|.+++||+++|.++.
T Consensus 509 l~~~Y--P-~d~F~~~R~~lDP~g~F~N~y 535 (541)
T TIGR01676 509 LKKKF--P-VDASNKARKALDPNKILSNNK 535 (541)
T ss_pred HHhhC--C-HHHHHHHHHHhCCCCccccHH
Confidence 45444 3 788899999999999998753
No 42
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=33.73 E-value=24 Score=37.07 Aligned_cols=29 Identities=14% Similarity=0.368 Sum_probs=23.8
Q ss_pred HhhhhhhccccchHHHHHhhhhcCCCCCccCC
Q 015646 364 AKAYGIKYFLGNFNRLVKIKTKVDPGNFFRNE 395 (403)
Q Consensus 364 ~~~~~~~y~G~n~~rL~~iK~kyDP~n~F~~~ 395 (403)
++.+.+.| . ++++.++.+++||+++|.++
T Consensus 536 ~~~L~~~Y--P-~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 536 RERLRKRF--P-VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHHHhhC--C-HHHHHHHHHHhCCCCccCCH
Confidence 34566665 4 99999999999999999875
No 43
>PHA02087 hypothetical protein
Probab=31.99 E-value=62 Score=23.47 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=16.9
Q ss_pred CcccccEeEEEEEecCccEEe
Q 015646 67 GLTVDNIVDAKLVDVSGRLLD 87 (403)
Q Consensus 67 G~~~D~v~~~~vV~a~G~~~~ 87 (403)
+.-...++...+|++||..+.
T Consensus 38 ~~d~nk~v~y~lvdsdg~~ie 58 (83)
T PHA02087 38 KFDPNKLVQYMLVDSDGVKIE 58 (83)
T ss_pred cCCCccceeEEEEcCCCcEEE
Confidence 344557889999999999996
No 44
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=29.37 E-value=20 Score=21.36 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=9.5
Q ss_pred cchHHHHHhhhh
Q 015646 374 GNFNRLVKIKTK 385 (403)
Q Consensus 374 ~n~~rL~~iK~k 385 (403)
+-|.||++||.-
T Consensus 11 eFY~rlk~Ike~ 22 (28)
T PF12108_consen 11 EFYERLKEIKEY 22 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 358999999963
No 45
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=27.05 E-value=89 Score=28.15 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=31.7
Q ss_pred CCCeeEEeCCCCEEEEcCCCCHHHHHHHHHhcCCc
Q 015646 3 NLHSVDVDIETETAWVQTGATLGEVYYRISEKSKT 37 (403)
Q Consensus 3 ~m~~i~~d~~~~~v~v~~G~~~~~v~~~l~~~~~~ 37 (403)
..++|+||-+.++|.|+.-+-+.++...|...|+.
T Consensus 33 Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~ 67 (247)
T KOG4656|consen 33 GINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRD 67 (247)
T ss_pred CcceEEEEhhhcEEEEEccCChHHHHHHHHhhChh
Confidence 46789999999999999999999999999988764
No 46
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=23.93 E-value=1.2e+02 Score=31.01 Aligned_cols=73 Identities=21% Similarity=0.364 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCcceecCCCCCccccccccccCccCccccccCcccccEeEEEEEecCccEEe-cCCCCcchhHHhh
Q 015646 25 GEVYYRISEKSKTHGFPAGVCPTVGVGGHIGGGGYGNMMRKYGLTVDNIVDAKLVDVSGRLLD-RKSMGEDLFWAIR 100 (403)
Q Consensus 25 ~~v~~~l~~~~~~~~~~~g~~~~vgvgG~~~ggG~g~~s~~~G~~~D~v~~~~vV~a~G~~~~-~~~~~~dLfwa~r 100 (403)
+++++.+..+|-.=+..-|+.|.||+.-- .---+|.....|-+..|-++ +||+++|+++- ..-+-.|+|.+|.
T Consensus 389 q~vI~~ck~nGafdPttmGsVpNVGLMAq-kAeEYGSHdKTF~i~~dGv~--~vv~~~G~VLleh~Ve~gDiwR~cq 462 (744)
T COG2838 389 QEVIDFCKTNGAFDPTTMGTVPNVGLMAQ-KAEEYGSHDKTFEIEADGVV--RVVDANGKVLLEHDVEAGDIWRMCQ 462 (744)
T ss_pred HHHHHHHHhcCCcCcccccCCCchHHHHH-HHHHhCCCCceEEecCCceE--EEEecCCcEeeecccccccHHHHHh
Confidence 45556666766322223478887765211 12235555555666666654 68899999983 3445678888764
No 47
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=22.56 E-value=1.4e+02 Score=20.54 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=24.8
Q ss_pred CeeEEeCCCCEEEEcCC---CCHHHHHHHHHhcCC
Q 015646 5 HSVDVDIETETAWVQTG---ATLGEVYYRISEKSK 36 (403)
Q Consensus 5 ~~i~~d~~~~~v~v~~G---~~~~~v~~~l~~~~~ 36 (403)
.++++|..+++++|..- +...+|.+++.+.|+
T Consensus 27 ~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy 61 (62)
T PF00403_consen 27 KSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGY 61 (62)
T ss_dssp EEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTS
T ss_pred cEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCc
Confidence 44678999999998754 456999999988764
No 48
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=21.47 E-value=56 Score=25.59 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=11.3
Q ss_pred HHHHhhhhcCCCCCc
Q 015646 378 RLVKIKTKVDPGNFF 392 (403)
Q Consensus 378 rL~~iK~kyDP~n~F 392 (403)
...+|++||||++-+
T Consensus 77 ~w~~l~~KyDp~~~y 91 (95)
T PF03392_consen 77 EWEELVKKYDPEGKY 91 (95)
T ss_dssp HHHHHHHHHTTT-TT
T ss_pred HHHHHHHHHCCCcch
Confidence 457789999999865
Done!