BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015647
(403 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2
Length = 490
Score = 306 bits (783), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 146/243 (60%), Positives = 184/243 (75%), Gaps = 2/243 (0%)
Query: 125 RAW-GNQSLPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGY 183
R W G +SL +DPE+++++++EK RQ +G+ELIASENF RA +EALGS L NKYSEGY
Sbjct: 27 RGWTGQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGY 86
Query: 184 PGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDR 243
PG RYY G + +D+IE LC RAL+AFDLD WGVNVQPYS + AN AVYT LL P DR
Sbjct: 87 PGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDR 146
Query: 244 IMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPK 303
IMGLD P GGHL+HGY + K++SA SIFFES PYK+NP+TG IDY +L A +RP+
Sbjct: 147 IMGLDLPDGGHLTHGYMS-DVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPR 205
Query: 304 ILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTH 363
++I G S+Y R DY R R++ D+ A L+ DMAHISGL+AAK + SPF + DIVT+TTH
Sbjct: 206 LIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTH 265
Query: 364 KSL 366
K+L
Sbjct: 266 KTL 268
>pdb|1LS3|B Chain B, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|D Chain D, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|A Chain A, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|C Chain C, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
Length = 483
Score = 291 bits (745), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 141/226 (62%), Positives = 171/226 (75%), Gaps = 1/226 (0%)
Query: 130 QSLPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYY 189
Q L +D E++DI++KE RQ G+ELIASENF RAV+EALGS L NKYSEGYPG RYY
Sbjct: 23 QPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYY 82
Query: 190 TGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDS 249
G ++ID++E LC +RAL+A+ LD WGVNVQPYS + ANFAVYT L+ P RIMGLD
Sbjct: 83 GGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDL 142
Query: 250 PSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGG 309
P GGHL+HG+ T KK+SA SIFFES YKVNP TGYIDY++LEE A + PK++I G
Sbjct: 143 PDGGHLTHGFMTD-KKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGT 201
Query: 310 SSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYC 355
S Y R DYGR R+IAD+ GA LM DMAHISGL+ A + SPF++C
Sbjct: 202 SCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHC 247
>pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
pdb|1CJ0|B Chain B, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
Length = 470
Score = 291 bits (744), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 141/226 (62%), Positives = 171/226 (75%), Gaps = 1/226 (0%)
Query: 130 QSLPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYY 189
Q L +D E++DI++KE RQ G+ELIASENF RAV+EALGS L NKYSEGYPG RYY
Sbjct: 10 QPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYY 69
Query: 190 TGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDS 249
G ++ID++E LC +RAL+A+ LD WGVNVQPYS + ANFAVYT L+ P RIMGLD
Sbjct: 70 GGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDL 129
Query: 250 PSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGG 309
P GGHL+HG+ T KK+SA SIFFES YKVNP TGYIDY++LEE A + PK++I G
Sbjct: 130 PDGGHLTHGFMTD-KKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGT 188
Query: 310 SSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYC 355
S Y R DYGR R+IAD+ GA LM DMAHISGL+ A + SPF++C
Sbjct: 189 SCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHC 234
>pdb|1RVU|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVU|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVY|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RVY|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 290 bits (741), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/226 (61%), Positives = 171/226 (75%), Gaps = 1/226 (0%)
Query: 130 QSLPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYY 189
Q L +D E++DI++KE RQ G+ELIASENF RAV+EALGS L NKYS+GYPG RYY
Sbjct: 23 QPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSQGYPGQRYY 82
Query: 190 TGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDS 249
G ++ID++E LC +RAL+A+ LD WGVNVQPYS + ANFAVYT L+ P RIMGLD
Sbjct: 83 GGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDL 142
Query: 250 PSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGG 309
P GGHL+HG+ T KK+SA SIFFES YKVNP TGYIDY++LEE A + PK++I G
Sbjct: 143 PDGGHLTHGFMTD-KKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGT 201
Query: 310 SSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYC 355
S Y R DYGR R+IAD+ GA LM DMAHISGL+ A + SPF++C
Sbjct: 202 SCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHC 247
>pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransferase (human)
Length = 470
Score = 289 bits (739), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 139/226 (61%), Positives = 172/226 (76%), Gaps = 1/226 (0%)
Query: 130 QSLPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYY 189
Q L +D E+++I++KE RQ G+ELIASENF RAV+EALGS L NKYSEGYPG RYY
Sbjct: 14 QPLKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYY 73
Query: 190 TGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDS 249
G ++ID++E LC +RAL+A+ LD WGVNVQPYS + ANFAVYT L+ P RIMGLD
Sbjct: 74 GGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDL 133
Query: 250 PSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGG 309
P GGHL+HG+ T KK+SA SIFFES PYKVNP TGYI+Y++LEE A + PK++I G
Sbjct: 134 PDGGHLTHGFMTD-KKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGT 192
Query: 310 SSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYC 355
S Y R +Y R R+IAD+ GA LM DMAHISGL+AA + SPF++C
Sbjct: 193 SCYSRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHC 238
>pdb|1RV3|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RV4|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV4|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV3|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 288 bits (738), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 140/226 (61%), Positives = 170/226 (75%), Gaps = 1/226 (0%)
Query: 130 QSLPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYY 189
Q L +D E++DI++KE RQ G+ELIASENF RAV+EALGS L NKYS GYPG RYY
Sbjct: 23 QPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYY 82
Query: 190 TGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDS 249
G ++ID++E LC +RAL+A+ LD WGVNVQPYS + ANFAVYT L+ P RIMGLD
Sbjct: 83 GGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDL 142
Query: 250 PSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGG 309
P GGHL+HG+ T KK+SA SIFFES YKVNP TGYIDY++LEE A + PK++I G
Sbjct: 143 PDGGHLTHGFMTD-KKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGT 201
Query: 310 SSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYC 355
S Y R DYGR R+IAD+ GA LM DMAHISGL+ A + SPF++C
Sbjct: 202 SCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHC 247
>pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|B Chain B, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|C Chain C, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|D Chain D, Recombinant Serine Hydroxymethyltransferase (Mouse)
Length = 478
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 136/227 (59%), Positives = 168/227 (74%), Gaps = 1/227 (0%)
Query: 129 NQSLPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARY 188
+Q L +D E++ I++KE RQ G+ELIASENF RAV+EALGS L NKYSEGYPG RY
Sbjct: 17 SQPLKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSSLNNKYSEGYPGQRY 76
Query: 189 YTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLD 248
Y G ++ID++E LC +RAL+A+ LD WGVNVQPYS + ANFAVYT L+ P RI GLD
Sbjct: 77 YGGTEFIDELEXLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIXGLD 136
Query: 249 SPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICG 308
P GGHL+HG+ T KK+SA SIFFES PYKV P+TGYI+Y++LEE A + PK++I G
Sbjct: 137 LPDGGHLTHGFXTD-KKKISATSIFFESXPYKVYPETGYINYDQLEENASLFHPKLIIAG 195
Query: 309 GSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYC 355
S Y R DY R R+IAD GA L D AHISGL+AA + SPF++C
Sbjct: 196 TSCYSRNLDYARLRKIADDNGAYLXADXAHISGLVAAGVVPSPFEHC 242
>pdb|2DKJ|A Chain A, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
pdb|2DKJ|B Chain B, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
Length = 407
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/231 (48%), Positives = 157/231 (67%), Gaps = 10/231 (4%)
Query: 136 DPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTGNQYI 195
D +F+++ E++RQ +G+ELIASENFV + V EA+GS LTNKY+EGYPGARYY G + I
Sbjct: 8 DEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVI 67
Query: 196 DQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHL 255
D++E+L ERA F W NVQP+S + AN AVY L+ PGD +MG+D +GGHL
Sbjct: 68 DRVESLAIERAKALF---GAAWA-NVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHL 123
Query: 256 SHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPRE 315
+HG +V+ + ++ Y V P T ID E++ A+++RPK+++ G S+YPR
Sbjct: 124 THG------SRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRF 177
Query: 316 WDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL 366
WD+ FR+IAD+ GA L+ DMAH +GL+AA +P Y +VTSTTHK+L
Sbjct: 178 WDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTL 228
>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
B.Stearothermophilus
pdb|1KKP|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Serine
pdb|1KL1|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine
pdb|1KL2|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
pdb|1KL2|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
Length = 419
Score = 231 bits (589), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 115/235 (48%), Positives = 156/235 (66%), Gaps = 10/235 (4%)
Query: 132 LPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTG 191
LP DP++F +E+E++RQ IELIASENFV RAVMEA GS LTNKY+EGYPG RYY G
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 192 NQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPS 251
+Y+D +E L ERA + F + NVQP+S AN AVY +L GD ++G++
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 252 GGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSS 311
GGHL+HG V+ + + + Y V+P+T IDY+ + EKA +RPK+++ S+
Sbjct: 120 GGHLTHG------SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASA 173
Query: 312 YPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL 366
YPR D+ +FR+IAD+ GA LM DMAHI+GL+AA +P Y VT+TTHK+L
Sbjct: 174 YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTL 228
>pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine
pdb|2VMX|A Chain A, Crystal Structure Of F351gbsshmt In Complex With
L-Allo-Thr
pdb|2VMY|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMY|B Chain B, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMW|A Chain A, Crystal Structure Of F351gbsshmt In Complex With L-Ser
pdb|2VMZ|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly
Length = 405
Score = 231 bits (588), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 115/235 (48%), Positives = 156/235 (66%), Gaps = 10/235 (4%)
Query: 132 LPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTG 191
LP DP++F +E+E++RQ IELIASENFV RAVMEA GS LTNKY+EGYPG RYY G
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 192 NQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPS 251
+Y+D +E L ERA + F + NVQP+S AN AVY +L GD ++G++
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 252 GGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSS 311
GGHL+HG V+ + + + Y V+P+T IDY+ + EKA +RPK+++ S+
Sbjct: 120 GGHLTHG------SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASA 173
Query: 312 YPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL 366
YPR D+ +FR+IAD+ GA LM DMAHI+GL+AA +P Y VT+TTHK+L
Sbjct: 174 YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTL 228
>pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine
pdb|2VMO|A Chain A, Crystal Structure Of N341absshmt Gly External Aldimine
pdb|2VMP|A Chain A, Crystal Structure Of N341absshmt L-Ser External Aldimine
pdb|2VMQ|A Chain A, Structure Of N341absshmt Crystallized In The Presence Of
L- Allo-Thr
Length = 405
Score = 231 bits (588), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 115/235 (48%), Positives = 156/235 (66%), Gaps = 10/235 (4%)
Query: 132 LPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTG 191
LP DP++F +E+E++RQ IELIASENFV RAVMEA GS LTNKY+EGYPG RYY G
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 192 NQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPS 251
+Y+D +E L ERA + F + NVQP+S AN AVY +L GD ++G++
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 252 GGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSS 311
GGHL+HG V+ + + + Y V+P+T IDY+ + EKA +RPK+++ S+
Sbjct: 120 GGHLTHG------SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASA 173
Query: 312 YPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL 366
YPR D+ +FR+IAD+ GA LM DMAHI+GL+AA +P Y VT+TTHK+L
Sbjct: 174 YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTL 228
>pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine
pdb|2VIB|A Chain A, Crystal Structure Of S172absshmt Obtained In The Presence
Of L-Allo-Thr
pdb|2VIA|A Chain A, Crystal Structure Of S172absshmt L-Serine External
Aldimine
pdb|2VI9|A Chain A, Crystal Structure Of S172absshmt Glycine External Aldimine
Length = 405
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 156/235 (66%), Gaps = 10/235 (4%)
Query: 132 LPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTG 191
LP DP++F +E+E++RQ IELIASENFV RAVMEA GS LTNKY+EGYPG RYY G
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 192 NQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPS 251
+Y+D +E L ERA + F + NVQP+S AN AVY +L GD ++G++
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 252 GGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSS 311
GGHL+HG V+ + + + Y V+P+T IDY+ + EKA +RPK+++ ++
Sbjct: 120 GGHLTHG------SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAAAA 173
Query: 312 YPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL 366
YPR D+ +FR+IAD+ GA LM DMAHI+GL+AA +P Y VT+TTHK+L
Sbjct: 174 YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTL 228
>pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Glycine
Length = 419
Score = 229 bits (585), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 156/235 (66%), Gaps = 10/235 (4%)
Query: 132 LPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTG 191
LP DP++F +E+E++RQ IELIASENFV RAVMEA GS LTNKY+EGYPG RYY G
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 192 NQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPS 251
+Y+D +E L ERA + F + NVQP+S AN AVY +L GD ++G++
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 252 GGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSS 311
GGHL+HG V+ + + + Y V+P+T IDY+ + EKA +RPK+++ S+
Sbjct: 120 GGHLTHG------SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASA 173
Query: 312 YPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL 366
YPR D+ +FR+IAD+ GA LM DMAHI+GL+AA +P Y VT+TTH++L
Sbjct: 174 YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHQTL 228
>pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine
pdb|2VGT|A Chain A, Crystal Structure Of E53qbsshmt With Glycine
pdb|2VGV|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of L-Allo-Threonine
pdb|2VGW|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of Glycine And 5-Fomyl Tetrahydrofolate
pdb|2VGU|A Chain A, Crystal Structure Of E53qbsshmt With L-Serine
Length = 407
Score = 229 bits (585), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 156/235 (66%), Gaps = 10/235 (4%)
Query: 132 LPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTG 191
LP DP++F +E+E++RQ IELIASENFV RAVMEA GS LTNKY++GYPG RYY G
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAQGYPGRRYYGG 63
Query: 192 NQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPS 251
+Y+D +E L ERA + F + NVQP+S AN AVY +L GD ++G++
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 252 GGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSS 311
GGHL+HG V+ + + + Y V+P+T IDY+ + EKA +RPK+++ S+
Sbjct: 120 GGHLTHG------SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASA 173
Query: 312 YPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL 366
YPR D+ +FR+IAD+ GA LM DMAHI+GL+AA +P Y VT+TTHK+L
Sbjct: 174 YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTL 228
>pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine
pdb|2W7E|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Glycine
pdb|2W7F|A Chain A, Crystal Structure Of Y51fbsshmt L-Ser External Aldimine
pdb|2W7G|A Chain A, Crystal Structure Of Y51fbsshmt L-Allo-Threonine Extrnal
Aldimine
pdb|2W7H|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Gly And 5-Formyl Tetrahydrofolate
Length = 405
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 156/235 (66%), Gaps = 10/235 (4%)
Query: 132 LPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTG 191
LP DP++F +E+E++RQ IELIASENFV RAVMEA GS LTNK++EGYPG RYY G
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKFAEGYPGRRYYGG 63
Query: 192 NQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPS 251
+Y+D +E L ERA + F + NVQP+S AN AVY +L GD ++G++
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 252 GGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSS 311
GGHL+HG V+ + + + Y V+P+T IDY+ + EKA +RPK+++ S+
Sbjct: 120 GGHLTHG------SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASA 173
Query: 312 YPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL 366
YPR D+ +FR+IAD+ GA LM DMAHI+GL+AA +P Y VT+TTHK+L
Sbjct: 174 YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTL 228
>pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Serine
pdb|1YJZ|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus
Length = 419
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 155/235 (65%), Gaps = 10/235 (4%)
Query: 132 LPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTG 191
LP DP++F +E+E++RQ IELIASENFV RAVMEA GS LTNKY+EGYPG RYY G
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 192 NQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPS 251
+Y+D +E L ERA + F + NVQP+S AN AVY +L GD ++G++
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 252 GGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSS 311
GGHL+HG V+ + + + Y V+P+T IDY+ + EKA +RPK+++ S+
Sbjct: 120 GGHLTHG------SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASA 173
Query: 312 YPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL 366
YPR D+ +FR+IAD+ GA LM DMAHI+GL+AA +P Y VT+TTH +L
Sbjct: 174 YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHMTL 228
>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine
pdb|2W7J|A Chain A, Crystal Structure Of Y61absshmt Glycine External Aldimine
pdb|2W7K|A Chain A, Crystal Structure Of Y61absshmt L-Serine External Aldimine
pdb|2W7L|A Chain A, Crystal Structure Of Y61absshmt L-Allo-Threonine External
Aldimine
pdb|2W7M|A Chain A, Crystal Structure Of Y61absshmt Obtained In The Presence
Of Glycine And 5-Formyl Tetrahydrofolate
Length = 405
Score = 228 bits (580), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 155/235 (65%), Gaps = 10/235 (4%)
Query: 132 LPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTG 191
LP DP++F +E+E++RQ IELIASENFV RAVMEA GS LTNKY+EGYPG RY G
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYAGG 63
Query: 192 NQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPS 251
+Y+D +E L ERA + F + NVQP+S AN AVY +L GD ++G++
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 252 GGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSS 311
GGHL+HG V+ + + + Y V+P+T IDY+ + EKA +RPK+++ S+
Sbjct: 120 GGHLTHG------SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASA 173
Query: 312 YPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL 366
YPR D+ +FR+IAD+ GA LM DMAHI+GL+AA +P Y VT+TTHK+L
Sbjct: 174 YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTL 228
>pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine
pdb|2VMS|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of Glycine
pdb|2VMT|A Chain A, Crystal Structure Of Y60absshmt L-Ser External Aldimine
pdb|2VMU|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of L-Allo-Thr
Length = 405
Score = 228 bits (580), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 155/235 (65%), Gaps = 10/235 (4%)
Query: 132 LPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTG 191
LP DP++F +E+E++RQ IELIASENFV RAVMEA GS LTNKY+EGYPG R Y G
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRAYGG 63
Query: 192 NQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPS 251
+Y+D +E L ERA + F + NVQP+S AN AVY +L GD ++G++
Sbjct: 64 CEYVDIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 252 GGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSS 311
GGHL+HG V+ + + + Y V+P+T IDY+ + EKA +RPK+++ S+
Sbjct: 120 GGHLTHG------SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASA 173
Query: 312 YPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL 366
YPR D+ +FR+IAD+ GA LM DMAHI+GL+AA +P Y VT+TTHK+L
Sbjct: 174 YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTL 228
>pdb|3N0L|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
pdb|3N0L|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
Length = 417
Score = 220 bits (561), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 117/236 (49%), Positives = 151/236 (63%), Gaps = 11/236 (4%)
Query: 131 SLPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYT 190
SL D EIFD+ KE +RQ +G+E IASENF V E GS LTNKY+EGYPG RYY
Sbjct: 5 SLEXFDKEIFDLTNKELERQCEGLEXIASENFTLPEVXEVXGSILTNKYAEGYPGKRYYG 64
Query: 191 GNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSP 250
G +++D+IE L ER K F+ NVQP S + AN VY L+ PGD+I+G D
Sbjct: 65 GCEFVDEIETLAIERCKKLFNCKF----ANVQPNSGSQANQGVYAALINPGDKILGXDLS 120
Query: 251 SGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGS 310
GGHL+HG KVS++ +ES Y V G IDYEK+ E A +PK+++CG S
Sbjct: 121 HGGHLTHG------AKVSSSGKXYESCFYGVELD-GRIDYEKVREIAKKEKPKLIVCGAS 173
Query: 311 SYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL 366
+Y R D+ +FR+IAD+ GA L D+AHI+GL+ A E SPF Y +V+STTHK+L
Sbjct: 174 AYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTL 229
>pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
pdb|3H7F|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
Length = 447
Score = 215 bits (548), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 157/241 (65%), Gaps = 12/241 (4%)
Query: 128 GNQSLPLA--DPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPG 185
G+ S PLA DP+I +++ KE RQ +E+IASENFV RAV++A GS LTNKY+EG PG
Sbjct: 20 GSMSAPLAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPG 79
Query: 186 ARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIM 245
RYY G +++D +ENL +RA F + NVQP+S AN AV L+ PG+R++
Sbjct: 80 RRYYGGCEHVDVVENLARDRAKALFGAEF----ANVQPHSGAQANAAVLHALMSPGERLL 135
Query: 246 GLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKIL 305
GLD +GGHL+HG +++ + +E+ Y V+P T ID + + A+++RPK++
Sbjct: 136 GLDLANGGHLTHGM------RLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVI 189
Query: 306 ICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKS 365
I G S+YPR D+ FR IAD+ GA L+ DMAH +GL+AA SP + D+V++T H +
Sbjct: 190 IAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHXT 249
Query: 366 L 366
L
Sbjct: 250 L 250
>pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|C Chain C, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|D Chain D, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
Length = 425
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 151/238 (63%), Gaps = 10/238 (4%)
Query: 129 NQSLPLADPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARY 188
+QSL D + + KE +RQ +ELIASEN V RAV++A GS LTNKY+EGYPG RY
Sbjct: 10 SQSLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRY 69
Query: 189 YTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLD 248
Y G ++ D++E L ER + F+ NVQP+S AN AV L PGD ++G+
Sbjct: 70 YGGCEFADEVEALAIERVKRLFNAGH----ANVQPHSGAQANGAVMLALAKPGDTVLGMS 125
Query: 249 SPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICG 308
+GGHL+HG K + + +F + Y V+ T IDY+++E A ++P ++I G
Sbjct: 126 LDAGGHLTHG------AKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAG 179
Query: 309 GSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL 366
S+YPR+ D+ RFR IAD GA LM DMAHI+G+IAA A+P ++ +VTSTTHK+L
Sbjct: 180 FSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTL 237
>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|B Chain B, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|C Chain C, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|D Chain D, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant
Length = 415
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 150/231 (64%), Gaps = 10/231 (4%)
Query: 136 DPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTGNQYI 195
D I + +E+E QRQ IELIASENFV AVMEA GS LTNKY+EGYPG RYY G +++
Sbjct: 11 DKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFV 70
Query: 196 DQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHL 255
D E++ +RA F + VNVQP+S AN AVY L GD ++G++ GGHL
Sbjct: 71 DVTESIAIDRAKALFGAEH----VNVQPHSGPQANMAVYLVALEMGDTVLGMNLSHGGHL 126
Query: 256 SHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPRE 315
+HG V+ + F+ Y V+ T I+Y+++ + A++++PK+++ G S+Y R
Sbjct: 127 THG------APVNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRT 180
Query: 316 WDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL 366
D+ +F++IAD+ A LM DMAHI+GL+AA +P +Y D VT+TTHK+L
Sbjct: 181 IDFKKFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTL 231
>pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|B Chain B, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|C Chain C, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|D Chain D, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
Length = 417
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/220 (45%), Positives = 142/220 (64%), Gaps = 11/220 (5%)
Query: 136 DPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTGNQYI 195
D E++ ME+EK RQ + IELIASEN+ VM+A GS LTNKY+EGYPG RYY G +Y+
Sbjct: 12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYV 71
Query: 196 DQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHL 255
D +E L +RA + F D NVQP+S + ANFAVYT LL PGD ++G++ GGHL
Sbjct: 72 DIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHL 127
Query: 256 SHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPRE 315
+H G V+ + + PY ++ TG+IDY LE++A +++PK++I G S+Y
Sbjct: 128 TH------GSPVNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGGFSAYSGV 180
Query: 316 WDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYC 355
D+ + R+IAD GA L DMAH++GL+AA +P +
Sbjct: 181 VDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHA 220
>pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|B Chain B, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|C Chain C, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|D Chain D, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
Length = 417
Score = 195 bits (495), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 142/220 (64%), Gaps = 11/220 (5%)
Query: 136 DPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTGNQYI 195
D E++ ME+EK RQ + IELIASEN+ VM+A GS LTNKY+EGYPG RY+ G +Y+
Sbjct: 12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYFGGCEYV 71
Query: 196 DQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHL 255
D +E L +RA + F D NVQP+S + ANFAVYT LL PGD ++G++ GGHL
Sbjct: 72 DIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHL 127
Query: 256 SHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPRE 315
+H G V+ + + PY ++ TG+IDY LE++A +++PK++I G S+Y
Sbjct: 128 TH------GSPVNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGGFSAYSGV 180
Query: 316 WDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYC 355
D+ + R+IAD GA L DMAH++GL+AA +P +
Sbjct: 181 VDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHA 220
>pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant
Length = 417
Score = 195 bits (495), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 142/220 (64%), Gaps = 11/220 (5%)
Query: 136 DPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTGNQYI 195
D E++ ME+EK RQ + IELIASEN+ VM+A GS LTNK++EGYPG RYY G +Y+
Sbjct: 12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKFAEGYPGKRYYGGCEYV 71
Query: 196 DQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHL 255
D +E L +RA + F D NVQP+S + ANFAVYT LL PGD ++G++ GGHL
Sbjct: 72 DIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHL 127
Query: 256 SHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPRE 315
+H G V+ + + PY ++ TG+IDY LE++A +++PK++I G S+Y
Sbjct: 128 TH------GSPVNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGGFSAYSGV 180
Query: 316 WDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYC 355
D+ + R+IAD GA L DMAH++GL+AA +P +
Sbjct: 181 VDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHA 220
>pdb|3GBX|A Chain A, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
pdb|3GBX|B Chain B, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
Length = 420
Score = 181 bits (459), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 138/220 (62%), Gaps = 11/220 (5%)
Query: 136 DPEIFDIMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTGNQYI 195
D E++ E+EK RQ + IELIASEN+ V +A GS LTNKY+EGYPG RYY G +Y+
Sbjct: 15 DAELWQAXEQEKVRQEEHIELIASENYTSPRVXQAQGSQLTNKYAEGYPGKRYYGGCEYV 74
Query: 196 DQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHL 255
D +E L +RA + F D NVQP+S + ANFAVYT LL PGD ++G + GGHL
Sbjct: 75 DVVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLQPGDTVLGXNLAQGGHL 130
Query: 256 SHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPRE 315
+HG +P V+ + + PY ++ ++G IDY++ + A +++PK +I G S+Y
Sbjct: 131 THG--SP----VNFSGKLYNIVPYGID-ESGKIDYDEXAKLAKEHKPKXIIGGFSAYSGV 183
Query: 316 WDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYC 355
D+ + R+IAD GA L D AH++GLIAA +P +
Sbjct: 184 VDWAKXREIADSIGAYLFVDXAHVAGLIAAGVYPNPVPHA 223
>pdb|3MDG|A Chain A, Crystal Structure Of The 25kda Subunit Of Human Cleavage
Factor Im In Complex With Rna Uuguau
pdb|3MDG|B Chain B, Crystal Structure Of The 25kda Subunit Of Human Cleavage
Factor Im In Complex With Rna Uuguau
pdb|3MDI|A Chain A, Crystal Structure Of The 25kda Subunit Of Human Cleavage
Factor Im In Complex With Rna Uguaaa
pdb|3MDI|B Chain B, Crystal Structure Of The 25kda Subunit Of Human Cleavage
Factor Im In Complex With Rna Uguaaa
Length = 227
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 45/107 (42%)
Query: 177 NKYSEGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTG 236
N+ G+P GN+YI Q + L ER + + L + +G Y S+ A +
Sbjct: 7 NRSQTGWPRGVTQFGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQR 66
Query: 237 LLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNP 283
+ D+I + G + H + P + + FF+ ++NP
Sbjct: 67 MREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNP 113
>pdb|3BAP|A Chain A, Crystal Structure Of The 25 Kda Subunit Of Human Cleavage
Factor Im
Length = 227
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 44/107 (41%)
Query: 177 NKYSEGYPGARYYTGNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTG 236
N+ G+P GN+YI Q + L ER + + L + +G Y S+ A +
Sbjct: 7 NRSQTGWPRGVTQFGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQR 66
Query: 237 LLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNP 283
D+I + G + H + P + + FF+ ++NP
Sbjct: 67 XREEFDKIGXRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNP 113
>pdb|3Q2S|A Chain A, Crystal Structure Of Cfim68 RrmCFIM25 COMPLEX
pdb|3Q2S|B Chain B, Crystal Structure Of Cfim68 RrmCFIM25 COMPLEX
pdb|3Q2T|A Chain A, Crystal Structure Of Cfim68 RrmCFIM25RNA COMPLEX
pdb|3Q2T|B Chain B, Crystal Structure Of Cfim68 RrmCFIM25RNA COMPLEX
Length = 207
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%)
Query: 191 GNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSP 250
GN+YI Q + L ER + + L + +G Y S+ A + + D+I +
Sbjct: 1 GNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTV 60
Query: 251 SGGHLSHGYHTPGGKKVSAASIFFESFPYKVNP 283
G + H + P + + FF+ ++NP
Sbjct: 61 EGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNP 93
>pdb|3BHO|A Chain A, Crystal Structure Of The 25kda Subunit Of Human Cleavage
Factor Im With Ap4a
Length = 208
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%)
Query: 191 GNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSP 250
GN+YI Q + L ER + + L + +G Y S+ A + + D+I +
Sbjct: 2 GNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTV 61
Query: 251 SGGHLSHGYHTPGGKKVSAASIFFESFPYKVNP 283
G + H + P + + FF+ ++NP
Sbjct: 62 EGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNP 94
>pdb|2CL3|A Chain A, Crystal Structure Of Human Cleavage And Polyadenylation
Specificity Factor 5 (Cpsf5)
pdb|3N9U|A Chain A, Crystal Structure Of The Complex Between The 25 Kda
Subunit And The 59 Kda Subunit (Rrm Domain) Of Human
Cleavage Factor Im
pdb|3N9U|B Chain B, Crystal Structure Of The Complex Between The 25 Kda
Subunit And The 59 Kda Subunit (Rrm Domain) Of Human
Cleavage Factor Im
Length = 230
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%)
Query: 191 GNQYIDQIENLCFERALKAFDLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSP 250
GN+YI Q + L ER + + L + +G Y S+ A + + D+I +
Sbjct: 24 GNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTV 83
Query: 251 SGGHLSHGYHTPGGKKVSAASIFFESFPYKVNP 283
G + H + P + + FF+ ++NP
Sbjct: 84 EGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNP 116
>pdb|1Z41|A Chain A, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
pdb|1Z41|B Chain B, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
pdb|1Z42|A Chain A, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Hydroxybenzaldehyde
pdb|1Z42|B Chain B, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Hydroxybenzaldehyde
pdb|1Z44|A Chain A, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Nitrophenol
pdb|1Z44|B Chain B, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Nitrophenol
pdb|1Z48|A Chain A, Crystal Structure Of Reduced Yqjm From Bacillus Subtilis
pdb|1Z48|B Chain B, Crystal Structure Of Reduced Yqjm From Bacillus Subtilis
Length = 338
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 145 KEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGYPGARYYTGNQYIDQIENL 201
+ K+ F IE+ A+ ++ + L +H T++Y G P RY + ID+++ +
Sbjct: 152 RAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYG-GSPENRYRFLREIIDEVKQV 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,800,016
Number of Sequences: 62578
Number of extensions: 500795
Number of successful extensions: 1158
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1075
Number of HSP's gapped (non-prelim): 34
length of query: 403
length of database: 14,973,337
effective HSP length: 101
effective length of query: 302
effective length of database: 8,652,959
effective search space: 2613193618
effective search space used: 2613193618
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)