BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015649
(403 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 155 bits (391), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 159/320 (49%), Gaps = 29/320 (9%)
Query: 25 NETINGSHQFKISGYSLSKGMGIGKYIASDTFIVGG---YAWAVYFYPDGKSAEDNAAYV 81
++ + S+ + I+ +S + +G+ I S TF G W + P G E
Sbjct: 2 SKVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLS 60
Query: 82 SLFIALASEGTDVRALFELTLLDQSGKERHKVHTHFGRTLESGPYALKYRGSMWGYKRFF 141
+ ++ ++VRA F+ ++L+ G+E + +ES +G WG+K+F
Sbjct: 61 LYLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFI 112
Query: 142 KRTLL--ETSDYLKDDCLSVSCCVGVVKSYTE--GPKTYS-IPVPPSDIGKQFGKLLEGG 196
+R L E + L DD L++ C V VV+ G T + + VP + + G L E
Sbjct: 113 RRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENS 172
Query: 197 RFTDVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVFKALLHF 256
RFTD V G+ F AHK +LA RSPVF A +++ +++ D+E VFK ++ F
Sbjct: 173 RFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCF 232
Query: 257 IYWDALPDMEDLVDLSPKWASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATT 316
IY P+++ MA LLAAAD+YALERLK++CE LC ++++ A
Sbjct: 233 IYTGKAPNLDK------------MADDLLAAADKYALERLKVMCEDALCSNLSVENAAEI 280
Query: 317 LALAEQHHCSQLKAVCLKFI 336
L LA+ H QLK + FI
Sbjct: 281 LILADLHSADQLKTQAVDFI 300
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 84/152 (55%), Gaps = 12/152 (7%)
Query: 178 IPVPPSDIGKQFGKLLEGGRFTDVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKDQNT 237
+ VP + + G L E RFTD V G+ F AHK +LA RSPVF A +++
Sbjct: 5 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKK 64
Query: 238 QCIKVEDMEVPVFKALLHFIYWDALPDMEDLVDLSPKWASTLMAQHLLAAADRYALERLK 297
+++ D+E VFK ++ FIY P+++ MA LLAAAD+YALERLK
Sbjct: 65 NRVEINDVEPEVFKEMMCFIYTGKAPNLDK------------MADDLLAAADKYALERLK 112
Query: 298 LLCEAKLCEDVAINTVATTLALAEQHHCSQLK 329
++CE LC ++++ A L LA+ H QLK
Sbjct: 113 VMCEDALCSNLSVENAAEILILADLHSADQLK 144
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 81/159 (50%), Gaps = 12/159 (7%)
Query: 178 IPVPPSDIGKQFGKLLEGGRFTDVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKDQNT 237
+ VP + + G L E RFTD V G+ F AHK +LA RSPVF A ++
Sbjct: 14 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKK 73
Query: 238 QCIKVEDMEVPVFKALLHFIYWDALPDMEDLVDLSPKWASTLMAQHLLAAADRYALERLK 297
+++ D+E VFK FIY P++ A LLAAAD+YALERLK
Sbjct: 74 NRVEINDVEPEVFKEXXCFIYTGKAPNL------------DKXADDLLAAADKYALERLK 121
Query: 298 LLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFI 336
+ CE LC ++++ A L LA+ H QLK + FI
Sbjct: 122 VXCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFI 160
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type
Poz Protein
Length = 159
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 20 TSTARNETINGSHQFKISGYSLSKGMGIGKYIASDTFIVGG---YAWAVYFYPDGKSAED 76
+S + + + S+ + I+ +S + +G+ I S TF G W + P G E
Sbjct: 2 SSGSSGKVVKFSYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLDEES 60
Query: 77 NAAYVSLFIALASEGTDVRALFELTLLDQSGKERHKVHTHFGRTLESGPYALKYRGSMWG 136
+ ++ ++VRA F+ ++L+ G+E + +ES +G WG
Sbjct: 61 KDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWG 112
Query: 137 YKRFFKRTLL--ETSDYLKDDCLSVSCCVGVVK 167
+K+F +R L E + L DD L++ C V VV+
Sbjct: 113 FKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 145
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath-
Macroh2asbcpep1
pdb|3IVQ|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVQ|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Pucsbc1_pep1
Length = 145
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 21 STARNETINGSHQFKISGYSLSKGMGIGKYIASDTFIVGG---YAWAVYFYPDGKSAEDN 77
S + + S+ + I+ +S + +G+ I S TF G W + P G E
Sbjct: 2 SGGSGKVVKFSYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESK 60
Query: 78 AAYVSLFIALASEGTDVRALFELTLLDQSGKERHKVHTHFGRTLESGPYALKYRGSMWGY 137
+ ++ ++VRA F+ ++L+ G+E + +ES +G WG+
Sbjct: 61 DYLSLYLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGF 112
Query: 138 KRFFKRTLL--ETSDYLKDDCLSVSCCVGVVK 167
K+F +R L E + L DD L++ C V VV+
Sbjct: 113 KKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 144
>pdb|3HQH|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep1
pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQL|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HQM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HSV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
pdb|3HSV|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
Length = 145
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 21 STARNETINGSHQFKISGYSLSKGMGIGKYIASDTFIVGG---YAWAVYFYPDGKSAEDN 77
S + + S+ + I+ +S + +G+ I S TF G W + P G E
Sbjct: 2 SGGSGKVVKFSYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESK 60
Query: 78 AAYVSLFIALASEGTDVRALFELTLLDQSGKERHKVHTHFGRTLESGPYALKYRGSMWGY 137
+ ++ ++VRA F+ ++L+ G+E + +ES +G WG+
Sbjct: 61 DYLSLYLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGF 112
Query: 138 KRFFKRTLL--ETSDYLKDDCLSVSCCVGVVK 167
K+F +R L E + L DD L++ C V VV+
Sbjct: 113 KKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQ 144
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 168 SYTEGPKTYSIPVPPSDIGKQFGKLLEGGRFTDVNFEVDGERFAAHKLVLATRSPVFKAQ 227
S EG S P + + + E RF D + +DGE K +LA SP + +
Sbjct: 2 SXAEGSAV-SDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTK 60
Query: 228 L-FGPLKDQ-NTQCIKVEDMEVPVFKALLHFIYWDALPDMEDLV 269
L + P KD +T I++E + V V + +L +I+ + ED +
Sbjct: 61 LNYNPPKDDGSTYKIELEGISVXVXREILDYIFSGQIRLNEDTI 104
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 168 SYTEGPKTYSIPVPPSDIGKQFGKLLEGGRFTDVNFEVDGERFAAHKLVLATRSPVFKAQ 227
S EG S P + + + E RF D + +DGE K +LA SP + +
Sbjct: 2 SXAEGSAV-SDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTK 60
Query: 228 L-FGPLKDQ-NTQCIKVEDMEVPVFKALLHFIYWDALPDMEDLV 269
L + P KD +T I++E + V V + +L +I+ + ED +
Sbjct: 61 LNYNPPKDDGSTYKIELEGISVXVXREILDYIFSGQIRLNEDTI 104
>pdb|2PPI|A Chain A, Structure Of The Btb (Tramtrack And Bric A Brac) Domain Of
Human Gigaxonin
Length = 144
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 187 KQFGKLLEGGRFTDVNFEVDGERFAAHKLVLATRSPVFKAQL-FGPLKDQ-NTQCIKVED 244
+ E RF D + +DGE K +LA SP + +L + P KD +T I++E
Sbjct: 36 RALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEG 95
Query: 245 MEVPVFKALLHFIYWDALPDMEDLV 269
+ V V + +L +I+ + ED +
Sbjct: 96 ISVMVMREILDYIFSGQIRLNEDTI 120
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 200 DVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVFKALLHFIYW 259
DV V+G+RF AH+ VLA S F +++ G + T + E++ V F+ L+ F Y
Sbjct: 38 DVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLP-EEVTVKGFEPLIQFAYT 96
Query: 260 DALPDMEDLVD 270
L +D VD
Sbjct: 97 AKLILSKDNVD 107
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6
pdb|2VKP|B Chain B, Crystal Structure Of Btb Domain From Btbd6
Length = 109
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 212 AHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVFKALLHFIYWDALPDMEDLVDL 271
AHK VLA S VF A +G L + ++ I + D+E F LL + Y D + D+E
Sbjct: 26 AHKYVLAVGSSVFYAXFYGDLAEVKSE-IHIPDVEPAAFLILLKYXYSDEI-DLE----- 78
Query: 272 SPKWASTLMAQHLLAAADRYALERLKLLC 300
A T++A L AA +Y + L C
Sbjct: 79 ----ADTVLAT--LYAAKKYIVPALAKAC 101
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 7/125 (5%)
Query: 172 GPKTYSIPVPPSDIGKQFGKLLEGGRFTDVNFEVDGERFAAHKLVLATRSPVFKAQLFGP 231
GP P + +Q + + G D F VDG F AHK VLA S FK LF
Sbjct: 1 GPLGSDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFK-MLFVD 59
Query: 232 LKDQNTQCIKVEDMEVPVFKALLHFIYWDALPDMEDLVDLSPKWASTLMAQHLLAAADRY 291
KD + ++ +L F+Y L + VD A+ L Q ++ A +
Sbjct: 60 QKD----VVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITAC--H 113
Query: 292 ALERL 296
AL+ L
Sbjct: 114 ALKSL 118
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 35.8 bits (81), Expect = 0.040, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 200 DVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVFKALLHFIY 258
DV V+G+RF AH+ VLA S F +++ G D E++ V F+ L+ F Y
Sbjct: 31 DVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQ-ADGELNITLPEEVTVKGFEPLIQFAY 88
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 35.8 bits (81), Expect = 0.047, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 179 PVPPSDIGKQFGKLLEGGRFTDVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQ 238
P P+ + + ++ G DV VD + F AH+ VLA S +F+ L +N+Q
Sbjct: 9 PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEI-----LFHRNSQ 63
Query: 239 CIKVEDMEVPVFKALLHFIYWDAL-PDMEDLVDL 271
++ + F+ +L + Y L EDL DL
Sbjct: 64 HYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDL 97
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 35.4 bits (80), Expect = 0.053, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 179 PVPPSDIGKQFGKLLEGGRFTDVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQ 238
P P+ + + ++ G DV VD + F AH+ VLA S +F+ L +N+Q
Sbjct: 8 PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEI-----LFHRNSQ 62
Query: 239 CIKVEDMEVPVFKALLHFIYWDAL-PDMEDLVDL 271
++ + F+ +L + Y L EDL DL
Sbjct: 63 HYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDL 96
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Query: 164 GVVKSYTEGPKTYSIPVPPSDIGKQFGKLLEGGRFTDVNFEVDGERFAAHKLVLATRSPV 223
G + +GP P SDI + G DV V+G F H+ VLA S
Sbjct: 1 GSMAGGVDGPIGIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQY 60
Query: 224 FKAQLF--GPLKDQNTQCIKVEDMEVPVFKALLHFIYWDAL 262
FK +LF G + DQ +++ + AL+ F Y L
Sbjct: 61 FK-KLFTSGAVVDQQ-NVYEIDFVSAEALTALMDFAYTATL 99
>pdb|1LB5|A Chain A, Traf6-Rank Complex
pdb|1LB6|A Chain A, Traf6-Cd40 Complex
Length = 160
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 18/128 (14%)
Query: 51 IASDTFIVG--GYAWAVYFYPDGKSAEDNAAYVSLFIALASEGTD------VRALFELTL 102
I S F G GY + + +A+ A Y+SLF+ D + LT+
Sbjct: 29 IHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTI 88
Query: 103 LDQSGKERHKVHTHFGRTLESGPYALKYRGSM-------WGYKRFFKRTLLETSDYLKDD 155
LDQS + H +++ P L ++ +GY F L ++KDD
Sbjct: 89 LDQSEAPVRQNHE---EIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDD 145
Query: 156 CLSVSCCV 163
L V C V
Sbjct: 146 TLLVRCEV 153
>pdb|1LB4|A Chain A, Traf6 Apo Structure
Length = 159
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 18/128 (14%)
Query: 51 IASDTFIVG--GYAWAVYFYPDGKSAEDNAAYVSLFIALASEGTD------VRALFELTL 102
I S F G GY + + +A+ A Y+SLF+ D + LT+
Sbjct: 28 IHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTI 87
Query: 103 LDQSGKERHKVHTHFGRTLESGPYALKYRGSM-------WGYKRFFKRTLLETSDYLKDD 155
LDQS + H +++ P L ++ +GY F L ++KDD
Sbjct: 88 LDQSEAPVRQNHE---EIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDD 144
Query: 156 CLSVSCCV 163
L V C V
Sbjct: 145 TLLVRCEV 152
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 33.5 bits (75), Expect = 0.23, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 187 KQFGKLLEGGRFTDVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDME 246
+Q + + G D F VDG F AHK VLA S FK LF KD + ++
Sbjct: 14 EQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFK-MLFVDQKD----VVHLDISN 68
Query: 247 VPVFKALLHFIYWDALPDMEDLVDLSPKWASTLMAQHLLAAADRYALERL 296
+L F+Y L + VD A+ L Q ++ A +AL+ L
Sbjct: 69 AAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITAC--HALKSL 116
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 178 IPVP--PSDIGKQFGKLLEGGRFTDVNFEVDGERFAAHKLVLATRSPVFKAQLF--GPLK 233
IP P SDI + G DV V+G F H+ VLA S FK +LF G +
Sbjct: 3 IPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFK-KLFTSGAVV 61
Query: 234 DQNTQCIKVEDMEVPVFKALLHFIYWDAL 262
DQ +++ + AL+ F Y L
Sbjct: 62 DQQ-NVYEIDFVSAEALTALMDFAYTATL 89
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 20/151 (13%)
Query: 207 GERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDM------EVPVFKALLHFIYWD 260
G F AH+ VLA + F L G + + +++ E +A++ ++Y
Sbjct: 62 GREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTG 121
Query: 261 ALPDMEDLVDLSPKWASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALA 320
+ ST +L ADR+ L RLK C L + + ++ +LA
Sbjct: 122 RIR------------VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLA 169
Query: 321 EQHHCSQLKAVCLKFIASPENLKAVMQTDGF 351
+ SQL I N V+Q + F
Sbjct: 170 HMYTLSQLALKAADMIR--RNFHKVIQDEEF 198
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 32.7 bits (73), Expect = 0.38, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 196 GRFTDVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVFKALLH 255
G F DV V+ +F AHK +L+ S F QLF Q +++ + +F +L+
Sbjct: 31 GLFCDVTVIVEDRKFRAHKNILSASSTYFH-QLF----SVAGQVVELSFIRAEIFAEILN 85
Query: 256 FIY 258
+IY
Sbjct: 86 YIY 88
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 32.7 bits (73), Expect = 0.38, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 196 GRFTDVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVFKALLH 255
G F DV V+ +F AHK +L+ S F QLF Q +++ + +F +L+
Sbjct: 29 GLFCDVTVIVEDRKFRAHKNILSASSTYFH-QLF----SVAGQVVELSFIRAEIFAEILN 83
Query: 256 FIY 258
+IY
Sbjct: 84 YIY 86
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 142 KRTLLETSDYLKDDCLSVSCCVGVVKSYTEGP 173
K +LL Y+ CL C VG+VK++ +GP
Sbjct: 113 KVSLLRALVYMIAQCLGAICGVGLVKAFMKGP 144
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 142 KRTLLETSDYLKDDCLSVSCCVGVVKSYTEGP 173
K +LL Y+ CL C VG+VK++ +GP
Sbjct: 136 KVSLLRALVYMIAQCLGAICGVGLVKAFMKGP 167
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 142 KRTLLETSDYLKDDCLSVSCCVGVVKSYTEGP 173
K +LL Y+ CL C VG+VK++ +GP
Sbjct: 113 KVSLLRALVYMIAQCLGAICGVGLVKAFMKGP 144
>pdb|4GJH|A Chain A, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|B Chain B, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|C Chain C, Crystal Structure Of The Traf Domain Of Traf5
Length = 178
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 60 GYAWAVYFYPDGKSAEDNAAYVSLFIALASEGTDV-----RALFELTLLDQSGKERHKVH 114
GY Y +G + F+ + E + R L LLDQSGK+ H V
Sbjct: 59 GYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVE 118
Query: 115 THFGRTLESGPYALKYR---GSM---WGYKRFFKRTLLETSD--YLKDDCLSVSCCVGVV 166
T ++ P + ++ G M G RF + LE S Y+KDD L + V +
Sbjct: 119 -----TFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLT 173
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 142 KRTLLETSDYLKDDCLSVSCCVGVVKSYTEGP 173
K LL Y+ CL C VG+VK++ +GP
Sbjct: 132 KVELLRALVYMIAQCLGAICGVGLVKAFMKGP 163
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 142 KRTLLETSDYLKDDCLSVSCCVGVVKSYTEGP 173
K LL Y+ CL C VG+VK++ +GP
Sbjct: 136 KVELLRALVYMIAQCLGAICGVGLVKAFMKGP 167
>pdb|1FLK|A Chain A, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLK|B Chain B, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLL|A Chain A, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLL|B Chain B, Molecular Basis For Cd40 Signaling Mediated By Traf3
Length = 228
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 57/154 (37%), Gaps = 27/154 (17%)
Query: 29 NGSHQFKISGYSLSKG---MGIGKYIASDTFIVGGYAWA----VYFYPDGKSAEDNAAYV 81
NG +KI Y K MG + S F G + + VY DG ++
Sbjct: 75 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMG---KGTHL 131
Query: 82 SLFIALASEGTDV------RALFELTLLDQSGKERHKVHTHFGRTLESGPYALKYR---G 132
SLF + D + L L+DQ RH G + P + ++ G
Sbjct: 132 SLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRH-----LGDAFKPDPNSSSFKKPTG 186
Query: 133 SM---WGYKRFFKRTLLETSDYLKDDCLSVSCCV 163
M G F +T+LE Y+KDD + + V
Sbjct: 187 EMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 220
>pdb|1RF3|A Chain A, Structurally Distinct Recognition Motifs In Lymphotoxin-B
Receptor And Cd40 For Traf-Mediated Signaling
Length = 200
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 57/154 (37%), Gaps = 27/154 (17%)
Query: 29 NGSHQFKISGYSLSKG---MGIGKYIASDTFIVGGYAWA----VYFYPDGKSAEDNAAYV 81
NG +KI Y K MG + S F G + + VY DG ++
Sbjct: 39 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMG---KGTHL 95
Query: 82 SLFIALASEGTDV------RALFELTLLDQSGKERHKVHTHFGRTLESGPYALKYR---G 132
SLF + D + L L+DQ RH G + P + ++ G
Sbjct: 96 SLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRH-----LGDAFKPDPNSSSFKKPTG 150
Query: 133 SM---WGYKRFFKRTLLETSDYLKDDCLSVSCCV 163
M G F +T+LE Y+KDD + + V
Sbjct: 151 EMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 184
>pdb|4GHU|A Chain A, Crystal Structure Of Traf3CARDIF
Length = 198
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 57/154 (37%), Gaps = 27/154 (17%)
Query: 29 NGSHQFKISGYSLSKG---MGIGKYIASDTFIVGGYAWA----VYFYPDGKSAEDNAAYV 81
NG +KI Y K MG + S F G + + VY DG ++
Sbjct: 39 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMG---KGTHL 95
Query: 82 SLFIALASEGTDV------RALFELTLLDQSGKERHKVHTHFGRTLESGPYALKYR---G 132
SLF + D + L L+DQ RH G + P + ++ G
Sbjct: 96 SLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRH-----LGDAFKPDPNSSSFKKPTG 150
Query: 133 SM---WGYKRFFKRTLLETSDYLKDDCLSVSCCV 163
M G F +T+LE Y+KDD + + V
Sbjct: 151 EMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 184
>pdb|1KZZ|A Chain A, Downstream Regulator Tank Binds To The Cd40 Recognition
Site On Traf3
pdb|1L0A|A Chain A, Downstream Regulator Tank Binds To The Cd40 Recognition
Site On Traf3
pdb|1ZMS|A Chain A, Lmp1 Protein Binds To Traf3 As A Structural Cd40
pdb|2GKW|A Chain A, Key Contacts Promote Recongnito Of Baff-R By Traf3
Length = 192
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 57/154 (37%), Gaps = 27/154 (17%)
Query: 29 NGSHQFKISGYSLSKG---MGIGKYIASDTFIVGGYAWA----VYFYPDGKSAEDNAAYV 81
NG +KI Y K MG + S F G + + VY DG ++
Sbjct: 39 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMG---KGTHL 95
Query: 82 SLFIALASEGTDV------RALFELTLLDQSGKERHKVHTHFGRTLESGPYALKYR---G 132
SLF + D + L L+DQ RH G + P + ++ G
Sbjct: 96 SLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRH-----LGDAFKPDPNSSSFKKPTG 150
Query: 133 SM---WGYKRFFKRTLLETSDYLKDDCLSVSCCV 163
M G F +T+LE Y+KDD + + V
Sbjct: 151 EMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 184
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 24/153 (15%)
Query: 207 GERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVFKALLHFIYWDALPDME 266
G F AH+ VLA + F L G + + ++ W + P E
Sbjct: 44 GREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRK--------------WSSEPGPE 89
Query: 267 -DLVDLSPKW-------ASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLA 318
D V+ ++ ST +L ADR+ L RLK C L + + ++ +
Sbjct: 90 PDTVEAVIEYXYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHS 149
Query: 319 LAEQHHCSQLKAVCLKFIASPENLKAVMQTDGF 351
LA + SQL I N V+Q + F
Sbjct: 150 LAHXYTLSQLALKAADXIR--RNFHKVIQDEEF 180
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 183 SDIGKQFGKLLEGGRFTDVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKV 242
SD+ +L TDV V E+F AHK VL S +F + LK +N I +
Sbjct: 14 SDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLK-RNLSVINL 72
Query: 243 E-DMEVPVFKALLHFIY 258
+ ++ F LL F+Y
Sbjct: 73 DPEINPEGFNILLDFMY 89
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 29.3 bits (64), Expect = 4.1, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 196 GRFTDVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVE---DMEVPVFKA 252
G + DV+ V G F AH+ VLA S F+ LF N++ VE ++ F+
Sbjct: 31 GLYCDVSVVVKGHAFKAHRAVLAASSSYFR-DLF-----NNSRSAVVELPAAVQPQSFQQ 84
Query: 253 LLHFIY 258
+L F Y
Sbjct: 85 ILSFCY 90
>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ6|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ8|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ9|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|G Chain G, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|H Chain H, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|J Chain J, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|K Chain K, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 464
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 202 NFEVDGERFAAHKLVLATRS-PV-FKAQLFGPLKDQNTQCIKVED 244
EV GER+ A L+LAT S P+ K FG +T+ +KVE+
Sbjct: 122 EVEVGGERYGAKSLILATGSEPLELKGFPFGEDVWDSTRALKVEE 166
>pdb|4FW8|A Chain A, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|B Chain B, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|C Chain C, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|D Chain D, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
Length = 454
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 165 VVKSYTEGPKTYSIPVPPSDIGKQFGKLLEGGRFTDV 201
V + E T +IP+ ++G++ LL+GG+ DV
Sbjct: 388 VAPGFIETQMTAAIPLATREVGRRLNSLLQGGQPVDV 424
>pdb|3LLS|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Mycobacterium Tuberculosis
pdb|3LLS|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Mycobacterium Tuberculosis
Length = 475
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 165 VVKSYTEGPKTYSIPVPPSDIGKQFGKLLEGGRFTDV 201
V + E T +IP+ ++G++ LL+GG+ DV
Sbjct: 409 VAPGFIETQMTAAIPLATREVGRRLNSLLQGGQPVDV 445
>pdb|3V1T|C Chain C, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4)
From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom
Resolution
pdb|3V1T|D Chain D, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4)
From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom
Resolution
pdb|3V1U|A Chain A, Crystal Structure Of A Beta-Ketoacyl Reductase Fabg4 From
Mycobacterium Tuberculosis H37rv Complexed With Nad+ And
Hexanoyl-Coa At 2.5 Angstrom Resolution
Length = 462
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 165 VVKSYTEGPKTYSIPVPPSDIGKQFGKLLEGGRFTDV 201
V + E T +IP+ ++G++ LL+GG+ DV
Sbjct: 396 VAPGFIETQMTAAIPLATREVGRRLNSLLQGGQPVDV 432
>pdb|3Q6I|A Chain A, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
pdb|3Q6I|B Chain B, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
pdb|3Q6I|C Chain C, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
pdb|3Q6I|D Chain D, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
Length = 446
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 165 VVKSYTEGPKTYSIPVPPSDIGKQFGKLLEGGRFTDV 201
V + E T +IP+ ++G++ LL+GG+ DV
Sbjct: 380 VAPGFIETQMTAAIPLATREVGRRLNSLLQGGQPVDV 416
>pdb|3M1L|A Chain A, Crystal Strucutre Of A C-Terminal Trunacted Mutant Of A
Putative Ketoacyl Reductase (Fabg4) From Mycobacterium
Tuberculosis H37rv At 2.5 Angstrom Resolution
pdb|3M1L|B Chain B, Crystal Strucutre Of A C-Terminal Trunacted Mutant Of A
Putative Ketoacyl Reductase (Fabg4) From Mycobacterium
Tuberculosis H37rv At 2.5 Angstrom Resolution
Length = 432
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 165 VVKSYTEGPKTYSIPVPPSDIGKQFGKLLEGGRFTDV 201
V + E T +IP+ ++G++ LL+GG+ DV
Sbjct: 372 VAPGFIETQMTAAIPLATREVGRRLNSLLQGGQPVDV 408
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 187 KQFGKLLEGGRFTDVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDME 246
++ K E G++ D +V G F AH VLA S F++ L+G D + + +
Sbjct: 13 QELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQS-LYG---DGSGGSVVLPAGF 68
Query: 247 VPVFKALLHFIY 258
+F LL F Y
Sbjct: 69 AEIFGLLLDFFY 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,454,537
Number of Sequences: 62578
Number of extensions: 528072
Number of successful extensions: 1245
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1211
Number of HSP's gapped (non-prelim): 46
length of query: 403
length of database: 14,973,337
effective HSP length: 101
effective length of query: 302
effective length of database: 8,652,959
effective search space: 2613193618
effective search space used: 2613193618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)