Query 015649
Match_columns 403
No_of_seqs 325 out of 2505
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 08:17:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 99.9 1.4E-26 2.9E-31 234.9 16.3 158 182-355 9-168 (557)
2 KOG4350 Uncharacterized conser 99.9 8E-27 1.7E-31 213.4 10.8 164 183-357 29-192 (620)
3 PHA03098 kelch-like protein; P 99.9 1.4E-25 3E-30 228.5 15.6 144 194-355 5-150 (534)
4 KOG4441 Proteins containing BT 99.9 1.7E-25 3.6E-30 226.2 15.8 180 181-381 19-198 (571)
5 PHA02790 Kelch-like protein; P 99.9 1.1E-25 2.3E-30 225.2 12.6 155 185-355 9-167 (480)
6 cd03774 MATH_SPOP Speckle-type 99.9 5E-23 1.1E-27 171.8 14.1 131 27-167 2-138 (139)
7 cd03780 MATH_TRAF5 Tumor Necro 99.9 3.2E-23 6.9E-28 172.7 12.0 131 30-164 1-148 (148)
8 cd03772 MATH_HAUSP Herpesvirus 99.9 9.4E-23 2E-27 169.6 13.6 126 29-167 2-134 (137)
9 cd03777 MATH_TRAF3 Tumor Necro 99.9 8.6E-23 1.9E-27 176.2 12.9 135 27-165 36-185 (186)
10 cd03779 MATH_TRAF1 Tumor Necro 99.9 9.3E-23 2E-27 169.0 11.4 130 30-164 1-147 (147)
11 cd03771 MATH_Meprin Meprin fam 99.9 2.8E-22 6E-27 169.2 12.1 132 29-164 1-167 (167)
12 cd03781 MATH_TRAF4 Tumor Necro 99.9 2.6E-22 5.7E-27 169.8 11.9 132 30-164 1-154 (154)
13 cd03773 MATH_TRIM37 Tripartite 99.9 4E-22 8.8E-27 164.9 11.8 124 29-164 4-130 (132)
14 cd00270 MATH_TRAF_C Tumor Necr 99.9 2.1E-22 4.5E-27 170.2 10.1 132 30-164 1-149 (149)
15 cd03776 MATH_TRAF6 Tumor Necro 99.9 2.3E-22 4.9E-27 169.3 9.8 131 30-164 1-147 (147)
16 cd03775 MATH_Ubp21p Ubiquitin- 99.9 8.2E-22 1.8E-26 163.2 12.7 117 31-163 2-133 (134)
17 cd03778 MATH_TRAF2 Tumor Necro 99.8 2.2E-20 4.8E-25 156.3 12.1 135 27-164 16-164 (164)
18 KOG2075 Topoisomerase TOP1-int 99.8 2.5E-19 5.4E-24 168.3 15.3 168 175-356 91-264 (521)
19 cd00121 MATH MATH (meprin and 99.8 5E-19 1.1E-23 144.5 13.6 120 30-164 1-126 (126)
20 PF00651 BTB: BTB/POZ domain; 99.8 1.2E-19 2.6E-24 145.3 8.5 107 189-307 1-110 (111)
21 KOG4591 Uncharacterized conser 99.8 2.1E-19 4.6E-24 150.0 9.8 168 182-368 50-220 (280)
22 cd03783 MATH_Meprin_Alpha Mepr 99.8 2.4E-18 5.2E-23 143.3 9.2 133 29-163 1-166 (167)
23 PF00917 MATH: MATH domain; I 99.7 1E-17 2.2E-22 135.7 10.1 113 36-165 1-119 (119)
24 KOG4682 Uncharacterized conser 99.7 1.8E-17 3.8E-22 152.4 12.3 163 189-373 60-226 (488)
25 cd03782 MATH_Meprin_Beta Mepri 99.7 3.5E-17 7.5E-22 135.5 10.3 133 29-163 1-166 (167)
26 smart00225 BTB Broad-Complex, 99.7 1.9E-16 4.1E-21 121.0 8.8 90 200-301 1-90 (90)
27 KOG0783 Uncharacterized conser 99.6 3.1E-16 6.8E-21 155.2 8.3 165 198-371 710-876 (1267)
28 smart00061 MATH meprin and TRA 99.6 2.3E-14 5E-19 111.0 9.8 89 32-141 2-95 (95)
29 KOG1987 Speckle-type POZ prote 99.5 1.1E-12 2.5E-17 123.6 15.2 235 34-356 8-249 (297)
30 COG5077 Ubiquitin carboxyl-ter 99.2 1E-11 2.3E-16 122.7 7.0 124 27-167 36-172 (1089)
31 KOG0783 Uncharacterized conser 98.8 1.3E-08 2.7E-13 102.2 7.2 122 180-301 536-682 (1267)
32 KOG0511 Ankyrin repeat protein 98.6 9.1E-08 2E-12 88.3 7.6 133 208-355 301-443 (516)
33 KOG2838 Uncharacterized conser 98.5 1.6E-07 3.4E-12 83.1 4.5 133 183-315 220-395 (401)
34 KOG2838 Uncharacterized conser 98.3 6.7E-07 1.5E-11 79.2 5.1 107 179-294 111-219 (401)
35 KOG2716 Polymerase delta-inter 98.1 2.2E-05 4.9E-10 69.4 9.9 96 201-307 7-104 (230)
36 PF02214 BTB_2: BTB/POZ domain 97.8 2.8E-05 6E-10 59.9 3.9 88 201-300 1-94 (94)
37 KOG3473 RNA polymerase II tran 97.6 0.00051 1.1E-08 51.2 8.2 89 201-292 19-111 (112)
38 PF11822 DUF3342: Domain of un 97.2 0.00052 1.1E-08 63.5 4.9 88 208-307 14-103 (317)
39 smart00512 Skp1 Found in Skp1 96.9 0.0064 1.4E-07 47.6 8.2 92 201-293 4-104 (104)
40 KOG1863 Ubiquitin carboxyl-ter 96.9 0.001 2.2E-08 73.1 4.8 121 30-167 27-153 (1093)
41 KOG1724 SCF ubiquitin ligase, 96.6 0.015 3.3E-07 49.0 8.9 105 206-311 13-130 (162)
42 PF03931 Skp1_POZ: Skp1 family 96.6 0.014 3E-07 40.9 7.4 56 201-259 3-59 (62)
43 PF07707 BACK: BTB And C-termi 96.5 0.0055 1.2E-07 47.6 5.5 61 313-382 1-61 (103)
44 KOG0297 TNF receptor-associate 96.5 0.0015 3.2E-08 63.7 2.3 78 27-105 277-365 (391)
45 KOG1665 AFH1-interacting prote 96.3 0.011 2.5E-07 51.4 6.6 93 199-302 9-105 (302)
46 KOG2714 SETA binding protein S 96.3 0.012 2.7E-07 56.1 7.2 92 200-303 12-110 (465)
47 KOG0511 Ankyrin repeat protein 96.2 0.0066 1.4E-07 56.9 4.8 89 198-300 149-238 (516)
48 smart00875 BACK BTB And C-term 95.2 0.027 5.8E-07 43.3 4.0 41 313-355 1-41 (101)
49 KOG2715 Uncharacterized conser 94.4 0.2 4.3E-06 41.8 7.1 98 198-307 20-121 (210)
50 KOG1778 CREB binding protein/P 94.2 0.022 4.7E-07 53.5 1.5 145 200-357 28-173 (319)
51 COG5201 SKP1 SCF ubiquitin lig 93.5 0.71 1.5E-05 36.8 8.4 110 200-312 3-126 (158)
52 PF01466 Skp1: Skp1 family, di 89.6 0.63 1.4E-05 34.2 4.2 48 276-323 11-61 (78)
53 KOG2075 Topoisomerase TOP1-int 85.9 1.5 3.3E-05 42.9 5.5 61 308-373 185-250 (521)
54 KOG2723 Uncharacterized conser 73.5 10 0.00022 33.7 6.1 94 198-302 7-104 (221)
55 KOG3840 Uncharaterized conserv 65.8 11 0.00023 35.0 4.5 87 196-293 93-184 (438)
56 PHA03098 kelch-like protein; P 55.9 22 0.00048 36.3 5.7 31 307-337 72-102 (534)
57 PF11822 DUF3342: Domain of un 55.3 5.4 0.00012 37.4 0.9 41 307-349 71-111 (317)
58 PF00651 BTB: BTB/POZ domain; 52.7 14 0.00031 28.3 2.9 29 309-337 80-108 (111)
59 PF07707 BACK: BTB And C-termi 51.2 31 0.00067 26.0 4.6 56 282-337 2-71 (103)
60 PF09593 Pathogen_betaC1: Beta 41.0 26 0.00055 27.9 2.5 54 206-262 20-77 (117)
61 KOG4682 Uncharacterized conser 39.2 26 0.00057 33.9 2.7 32 276-307 170-201 (488)
62 PF02519 Auxin_inducible: Auxi 35.5 1.6E+02 0.0035 22.7 6.2 54 201-257 41-99 (100)
63 PHA02790 Kelch-like protein; P 33.9 58 0.0013 32.9 4.5 32 276-307 120-151 (480)
64 PHA02713 hypothetical protein; 29.6 1.6E+02 0.0035 30.4 7.0 30 308-337 91-120 (557)
65 smart00875 BACK BTB And C-term 27.9 61 0.0013 24.0 2.8 25 283-307 3-27 (101)
66 PF12197 lci: Bacillus cereus 22.3 2.3E+02 0.005 18.3 4.1 31 50-84 10-41 (45)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.94 E-value=1.4e-26 Score=234.94 Aligned_cols=158 Identities=18% Similarity=0.291 Sum_probs=148.7
Q ss_pred CchHHHHHHhhhhCCCcccEEEEEc-CeEEEEehhhhhccCHHHHHhhcCCCCCCC-cceEEecCCCHHHHHHHHhhhcc
Q 015649 182 PSDIGKQFGKLLEGGRFTDVNFEVD-GERFAAHKLVLATRSPVFKAQLFGPLKDQN-TQCIKVEDMEVPVFKALLHFIYW 259 (403)
Q Consensus 182 ~~~~~~~~~~l~~~~~~sDv~~~v~-~~~f~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~~i~l~d~~~~~f~~~L~~lY~ 259 (403)
...+++.+.+|+.++.+|||+|.|+ |++|+|||.|||++|+||++||.+++.|.. .++|.|+++++++|+.+|+|+||
T Consensus 9 ~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt 88 (557)
T PHA02713 9 NRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYN 88 (557)
T ss_pred hHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcC
Confidence 3567899999999999999999998 899999999999999999999999998764 78999999999999999999999
Q ss_pred CCCCCCcccccCCcccchHHHHHHHHHHhcccChHHHHHHHHHHHHccCChhhHHHHHHHHHHcCcHHHHHHHHHHhcCc
Q 015649 260 DALPDMEDLVDLSPKWASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASP 339 (403)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~i~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~ 339 (403)
+.+ +.+++.+||.+|++|+++.|++.|+++|.+.++.+||+.++.+|..+.+..|.+.|.+|+.
T Consensus 89 ~~i--------------~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~-- 152 (557)
T PHA02713 89 RHI--------------SSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLM-- 152 (557)
T ss_pred CCC--------------CHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHH--
Confidence 864 5678999999999999999999999999999999999999999999999899999999999
Q ss_pred ccHHHHHcccchhHHH
Q 015649 340 ENLKAVMQTDGFEYLK 355 (403)
Q Consensus 340 ~~~~~v~~~~~f~~l~ 355 (403)
+||.++.++++|.+|+
T Consensus 153 ~~f~~v~~~~ef~~L~ 168 (557)
T PHA02713 153 SNIPTLITTDAFKKTV 168 (557)
T ss_pred HHHHHHhCChhhhhCC
Confidence 9999999999998776
No 2
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.94 E-value=8e-27 Score=213.36 Aligned_cols=164 Identities=25% Similarity=0.458 Sum_probs=155.7
Q ss_pred chHHHHHHhhhhCCCcccEEEEEcCeEEEEehhhhhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhccCCC
Q 015649 183 SDIGKQFGKLLEGGRFTDVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVFKALLHFIYWDAL 262 (403)
Q Consensus 183 ~~~~~~~~~l~~~~~~sDv~~~v~~~~f~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~lY~~~~ 262 (403)
..+.+++++++.+.+++||+|+|++++|+|||.|||+||.||++|+.|+|.|+.+..|+|++...++|+.+|+|||+|++
T Consensus 29 ~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~ 108 (620)
T KOG4350|consen 29 NNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKI 108 (620)
T ss_pred cchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcce
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcccccCCcccchHHHHHHHHHHhcccChHHHHHHHHHHHHccCChhhHHHHHHHHHHcCcHHHHHHHHHHhcCcccH
Q 015649 263 PDMEDLVDLSPKWASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENL 342 (403)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~i~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~ 342 (403)
.... ...+.+.+.|.+|++|++..|.....++|.+.+..+|++.++..|..|++.+|...|+.|+. .|.
T Consensus 109 ~l~~---------~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmD--rnA 177 (620)
T KOG4350|consen 109 DLAG---------VEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMD--RNA 177 (620)
T ss_pred eccc---------chHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHh--cCH
Confidence 7543 67788999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHcccchhHHHhh
Q 015649 343 KAVMQTDGFEYLKES 357 (403)
Q Consensus 343 ~~v~~~~~f~~l~~~ 357 (403)
.+++..+.|..|++.
T Consensus 178 ~~lL~~~sFn~LSk~ 192 (620)
T KOG4350|consen 178 DQLLEDPSFNRLSKD 192 (620)
T ss_pred HhhhcCcchhhhhHH
Confidence 999999999999863
No 3
>PHA03098 kelch-like protein; Provisional
Probab=99.93 E-value=1.4e-25 Score=228.48 Aligned_cols=144 Identities=19% Similarity=0.339 Sum_probs=138.3
Q ss_pred hCCCcccEEEEE--cCeEEEEehhhhhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhccCCCCCCcccccC
Q 015649 194 EGGRFTDVNFEV--DGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVFKALLHFIYWDALPDMEDLVDL 271 (403)
Q Consensus 194 ~~~~~sDv~~~v--~~~~f~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~lY~~~~~~~~~~~~~ 271 (403)
.++.+|||+|.+ +|++|+|||.||+++|+||++||.+++. +.+|.|++ ++++|+.+|+|+|+|.+.
T Consensus 5 ~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~-------- 72 (534)
T PHA03098 5 ELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKIN-------- 72 (534)
T ss_pred ccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceE--------
Confidence 378999999998 9999999999999999999999999887 57899999 999999999999999987
Q ss_pred CcccchHHHHHHHHHHhcccChHHHHHHHHHHHHccCChhhHHHHHHHHHHcCcHHHHHHHHHHhcCcccHHHHHcccch
Q 015649 272 SPKWASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKAVMQTDGF 351 (403)
Q Consensus 272 ~~~~~~~~~~~~ll~~Ad~~~i~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~v~~~~~f 351 (403)
++.+++.+||.+|++|+++.|+..|+++|.+.++.+||+.++.+|..|++..|++.|.+||. +|+.++.++++|
T Consensus 73 ----i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~--~nf~~v~~~~~f 146 (534)
T PHA03098 73 ----ITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIR--NNIELIYNDPDF 146 (534)
T ss_pred ----EcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHH--HHHHHHhcCchh
Confidence 88899999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred hHHH
Q 015649 352 EYLK 355 (403)
Q Consensus 352 ~~l~ 355 (403)
.+|+
T Consensus 147 ~~l~ 150 (534)
T PHA03098 147 IYLS 150 (534)
T ss_pred hcCC
Confidence 8887
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.93 E-value=1.7e-25 Score=226.24 Aligned_cols=180 Identities=26% Similarity=0.325 Sum_probs=164.3
Q ss_pred CCchHHHHHHhhhhCCCcccEEEEEcCeEEEEehhhhhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhccC
Q 015649 181 PPSDIGKQFGKLLEGGRFTDVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVFKALLHFIYWD 260 (403)
Q Consensus 181 p~~~~~~~~~~l~~~~~~sDv~~~v~~~~f~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~lY~~ 260 (403)
+...+.+.++.+++.+.++||++.+++++|+|||.|||+.||||++||.++++|+.+.+|.|.++++..++.+|+|+||+
T Consensus 19 h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~ 98 (571)
T KOG4441|consen 19 HSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTG 98 (571)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcc
Confidence 34667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCcccchHHHHHHHHHHhcccChHHHHHHHHHHHHccCChhhHHHHHHHHHHcCcHHHHHHHHHHhcCcc
Q 015649 261 ALPDMEDLVDLSPKWASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPE 340 (403)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~i~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~ 340 (403)
.+. ++.+++.+||.+|++||++.+.+.|.+||.+.++.+||+.+..+|+.|++..|...+..|+. .
T Consensus 99 ~i~------------i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~--~ 164 (571)
T KOG4441|consen 99 KLE------------ISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYIL--Q 164 (571)
T ss_pred eEE------------echHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH--H
Confidence 997 89999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cHHHHHcccchhHHHhhChHHHHHHHHHHHhhCCCCCCCCC
Q 015649 341 NLKAVMQTDGFEYLKESCPSVLTELLQYVAKIGEHSVIASG 381 (403)
Q Consensus 341 ~~~~v~~~~~f~~l~~~~p~l~~ell~~~~~~~~~~~~~~~ 381 (403)
||.++.++++|.+|+. +.|..++..+...+..+.
T Consensus 165 ~F~~v~~~eefl~L~~-------~~l~~ll~~d~l~v~~E~ 198 (571)
T KOG4441|consen 165 HFAEVSKTEEFLLLSL-------EELIGLLSSDDLNVDSEE 198 (571)
T ss_pred HHHHHhccHHhhCCCH-------HHHHhhccccCCCcCCHH
Confidence 9999999999988763 233444444544444443
No 5
>PHA02790 Kelch-like protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=225.18 Aligned_cols=155 Identities=17% Similarity=0.215 Sum_probs=140.8
Q ss_pred HHHHHHhhhhCCCcccEEEEEcCeEEEEehhhhhccCHHHHHhhcCCCCCCCcceEEe--cCCCHHHHHHHHhhhccCCC
Q 015649 185 IGKQFGKLLEGGRFTDVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKV--EDMEVPVFKALLHFIYWDAL 262 (403)
Q Consensus 185 ~~~~~~~l~~~~~~sDv~~~v~~~~f~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l--~d~~~~~f~~~L~~lY~~~~ 262 (403)
..+++-+|...+.++||++. .|++|+|||+|||+.||||++||.+++.|++. +|.+ .++++++++.+|+|+||+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l 86 (480)
T PHA02790 9 YCKNILALSMTKKFKTIIEA-IGGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKV 86 (480)
T ss_pred hhhhHHHHHhhhhhceEEEE-cCcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeE
Confidence 34566777788999999765 55699999999999999999999999999865 5665 38999999999999999999
Q ss_pred CCCcccccCCcccchHHHHHHHHHHhcccChHHHHHHHHHHHHccCChhhHHHHHHHHHHcCcHHHHHHHHHHhcCcccH
Q 015649 263 PDMEDLVDLSPKWASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENL 342 (403)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~i~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~ 342 (403)
. ++.+++++||.+|++|+++.+++.|++||.+.++.+||+.++.+|+.|++..|++.+.+||. +||
T Consensus 87 ~------------it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~--~nF 152 (480)
T PHA02790 87 Y------------IDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIA--KHF 152 (480)
T ss_pred E------------EecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHH--HhH
Confidence 7 88999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHcc--cchhHHH
Q 015649 343 KAVMQT--DGFEYLK 355 (403)
Q Consensus 343 ~~v~~~--~~f~~l~ 355 (403)
.++.++ ++|..|+
T Consensus 153 ~~v~~~~~~ef~~L~ 167 (480)
T PHA02790 153 LELEDDIIDNFDYLS 167 (480)
T ss_pred HHHhcccchhhhhCC
Confidence 999986 7786543
No 6
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.90 E-value=5e-23 Score=171.76 Aligned_cols=131 Identities=32% Similarity=0.657 Sum_probs=106.3
Q ss_pred eeeeEEEEEEcCccCcccCCCCCeeeccceeecC---EEEEEEEeCCCCCCCCCCCeEEEEEEeec-CCceEEEEEEEEE
Q 015649 27 TINGSHQFKISGYSLSKGMGIGKYIASDTFIVGG---YAWAVYFYPDGKSAEDNAAYVSLFIALAS-EGTDVRALFELTL 102 (403)
Q Consensus 27 ~~~~~~~w~I~nfs~~~~~~~g~~~~S~~f~~~g---~~W~l~v~p~g~~~~~~~~~lslyL~~~~-~~w~~~a~~~~~l 102 (403)
+...+|+|+|+|||++++ ..|+.+.|++|.+|| ++|+|++||+|.. +++.+|+|+||++.+ ..|++.|+|+++|
T Consensus 2 ~~~~~~~w~I~~fS~~~~-~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~-~~~~~~iSlyL~l~~~~~~~v~a~f~~~l 79 (139)
T cd03774 2 VVKFCYMWTISNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCPKSEVRAKFKFSI 79 (139)
T ss_pred ceEEEEEEEECCchhhhh-cCCCEEECCCeecCCcCCceEEEEEeCCCCC-CCCCCeEEEEEEEccCCCCcEEEEEEEEE
Confidence 457899999999998775 578899999999998 5999999999986 346789999999865 4578999999999
Q ss_pred eeCCCCcccceeeccccccccCCceecccCccccccceeccccc--ccccccCCCcEEEEEEeeeee
Q 015649 103 LDQSGKERHKVHTHFGRTLESGPYALKYRGSMWGYKRFFKRTLL--ETSDYLKDDCLSVSCCVGVVK 167 (403)
Q Consensus 103 l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~fi~~~~L--~~~~fl~~d~l~i~~~v~i~~ 167 (403)
+|++++...... ....+.|. ....|||.+|+++++| +.+|||.||+++|+|+|.|+.
T Consensus 80 ~n~~~~~~~~~~-------~~~~~~f~-~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 80 LNAKGEETKAME-------SQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred EecCCCeeeeec-------ccCcEeCC-CCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 999875432111 11124454 3568999999999999 457999999999999999864
No 7
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.90 E-value=3.2e-23 Score=172.73 Aligned_cols=131 Identities=28% Similarity=0.418 Sum_probs=103.4
Q ss_pred eEEEEEEcCccCcc-cCCCCC--eeeccce--eecCEEEEEEEeCCCCCCCCCCCeEEEEEEeecC------CceEEEEE
Q 015649 30 GSHQFKISGYSLSK-GMGIGK--YIASDTF--IVGGYAWAVYFYPDGKSAEDNAAYVSLFIALASE------GTDVRALF 98 (403)
Q Consensus 30 ~~~~w~I~nfs~~~-~~~~g~--~~~S~~f--~~~g~~W~l~v~p~g~~~~~~~~~lslyL~~~~~------~w~~~a~~ 98 (403)
|.|+|+|.+|++++ .+..|. .++|++| ..+||+|+|++||||.+ .+.++|||+||.+..+ .|++.+++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~ 79 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQWPFRQRV 79 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCccccccCcceEEEE
Confidence 57999999999886 457777 8999999 89999999999999998 4477899999999876 59999999
Q ss_pred EEEEeeCCCCcccceeeccccccccCCceeccc----Cccccccceecccccccc--cccCCCcEEEEEEee
Q 015649 99 ELTLLDQSGKERHKVHTHFGRTLESGPYALKYR----GSMWGYKRFFKRTLLETS--DYLKDDCLSVSCCVG 164 (403)
Q Consensus 99 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~----~~~wG~~~fi~~~~L~~~--~fl~~d~l~i~~~v~ 164 (403)
+|+|+||+++........ ... .....|... +..||+.+|+++++|+++ +||+||+++|+|.|.
T Consensus 80 tfsLlDq~~~~~~~~~~~-~~~--~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v~ 148 (148)
T cd03780 80 TLMLLDQSGKKNHIMETF-KAD--PNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAVD 148 (148)
T ss_pred EEEEECCCCCCCCcceee-ecC--CccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEEC
Confidence 999999986544311111 000 001234222 446999999999999864 999999999999873
No 8
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.89 E-value=9.4e-23 Score=169.59 Aligned_cols=126 Identities=13% Similarity=0.284 Sum_probs=101.8
Q ss_pred eeEEEEEEcCccCcccCCCCCeeeccceeecCEEEEEEEeCCCCCCC-CCCCeEEEEEEeec----CCceEEEEEEEEEe
Q 015649 29 NGSHQFKISGYSLSKGMGIGKYIASDTFIVGGYAWAVYFYPDGKSAE-DNAAYVSLFIALAS----EGTDVRALFELTLL 103 (403)
Q Consensus 29 ~~~~~w~I~nfs~~~~~~~g~~~~S~~f~~~g~~W~l~v~p~g~~~~-~~~~~lslyL~~~~----~~w~~~a~~~~~ll 103 (403)
.++|+|+|.|||.+ ++.++|+.|.+||++|+|++||+|.... +..++||+||.|.. ..|++.|+|+++|+
T Consensus 2 ~~~~~~~I~~~S~l-----~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~ 76 (137)
T cd03772 2 EATFSFTVERFSRL-----SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRII 76 (137)
T ss_pred CcEEEEEECCcccC-----CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEE
Confidence 47899999999987 3789999999999999999999996531 23589999999965 24999999999999
Q ss_pred eCCCCcccceeeccccccccCCceecccCccccccceeccccc--ccccccCCCcEEEEEEeeeee
Q 015649 104 DQSGKERHKVHTHFGRTLESGPYALKYRGSMWGYKRFFKRTLL--ETSDYLKDDCLSVSCCVGVVK 167 (403)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~fi~~~~L--~~~~fl~~d~l~i~~~v~i~~ 167 (403)
|+++........ ..+.|......|||.+|++|++| +++|||+||+++|+|+|.|..
T Consensus 77 ~~~~~~~~~~~~--------~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 77 NYKDDEPSFSRR--------ISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred cCCCCcccEEEe--------eeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 998533221111 12456556678999999999999 468999999999999998753
No 9
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.89 E-value=8.6e-23 Score=176.18 Aligned_cols=135 Identities=27% Similarity=0.398 Sum_probs=105.3
Q ss_pred eeeeEEEEEEcCccCcc-cCCCCC--eeeccceeec--CEEEEEEEeCCCCCCCCCCCeEEEEEEeecC------CceEE
Q 015649 27 TINGSHQFKISGYSLSK-GMGIGK--YIASDTFIVG--GYAWAVYFYPDGKSAEDNAAYVSLFIALASE------GTDVR 95 (403)
Q Consensus 27 ~~~~~~~w~I~nfs~~~-~~~~g~--~~~S~~f~~~--g~~W~l~v~p~g~~~~~~~~~lslyL~~~~~------~w~~~ 95 (403)
...|+|+|+|.+||+.+ .+..|+ .++||+|++| ||+|+|++||||.+ .+.++|+|+||++.++ .|++.
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g-~~~~~~iSvyl~L~~ge~D~~L~WP~~ 114 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFK 114 (186)
T ss_pred ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCCcee
Confidence 44799999999999876 456666 8999999999 99999999999988 4467899999999875 59999
Q ss_pred EEEEEEEeeCCCCcccceeeccccccccCCceec-cc---CccccccceecccccccccccCCCcEEEEEEeee
Q 015649 96 ALFELTLLDQSGKERHKVHTHFGRTLESGPYALK-YR---GSMWGYKRFFKRTLLETSDYLKDDCLSVSCCVGV 165 (403)
Q Consensus 96 a~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~-~~---~~~wG~~~fi~~~~L~~~~fl~~d~l~i~~~v~i 165 (403)
++++|+|+||.+...... ..+..... ...|. .. +..||++.|+++++|++++||+||++.|+|.|..
T Consensus 115 ~~~tfsLlDQ~~~~~~~~-~~~~p~p~--~~~F~rp~~~~n~~~G~~~Fi~~~~Le~~~ylkdD~l~Irv~v~~ 185 (186)
T cd03777 115 QKVTLMLMDQGSSRRHLG-DAFKPDPN--SSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDT 185 (186)
T ss_pred EEEEEEEEcCCCcccccc-ceeccCCc--cccccCCccCCCCCCCchheeEHHHhccCCcEeCCEEEEEEEEec
Confidence 999999999976322211 11110000 02232 11 4469999999999999899999999999998863
No 10
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.89 E-value=9.3e-23 Score=169.00 Aligned_cols=130 Identities=25% Similarity=0.404 Sum_probs=99.8
Q ss_pred eEEEEEEcCccCccc-CCCC--Ceeeccceeec--CEEEEEEEeCCCCCCCCCCCeEEEEEEeecC------CceEEEEE
Q 015649 30 GSHQFKISGYSLSKG-MGIG--KYIASDTFIVG--GYAWAVYFYPDGKSAEDNAAYVSLFIALASE------GTDVRALF 98 (403)
Q Consensus 30 ~~~~w~I~nfs~~~~-~~~g--~~~~S~~f~~~--g~~W~l~v~p~g~~~~~~~~~lslyL~~~~~------~w~~~a~~ 98 (403)
|.|+|+|.||++..+ ...| ..++||+|+.+ ||+|+|++||||.+ .+.++|+|+||++..+ .|++.+++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~ 79 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDG-AGKGTHISLFFVIMKGEYDALLPWPFRHKV 79 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCcceEEEE
Confidence 679999999986443 3333 48999999875 99999999999998 4467899999999874 59999999
Q ss_pred EEEEeeCCCCcccceeeccccccccCCceec----ccCccccccceecccccccc--cccCCCcEEEEEEee
Q 015649 99 ELTLLDQSGKERHKVHTHFGRTLESGPYALK----YRGSMWGYKRFFKRTLLETS--DYLKDDCLSVSCCVG 164 (403)
Q Consensus 99 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~----~~~~~wG~~~fi~~~~L~~~--~fl~~d~l~i~~~v~ 164 (403)
+|+|+||.+..... .. +.... ....|. ..+..||+.+|+++++|+++ +||+||+++|+|+|.
T Consensus 80 tfsLlDq~~~~~~~-~~-~~~~~--~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 80 TFMLLDQNNREHVI-DA-FRPDL--SSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred EEEEECCCCCCCCc-Ee-ecCCc--ccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence 99999998644321 11 11100 012343 33457999999999999876 999999999999884
No 11
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.88 E-value=2.8e-22 Score=169.16 Aligned_cols=132 Identities=26% Similarity=0.419 Sum_probs=101.7
Q ss_pred eeEEEEEEcCccCcc-cCCCCCeeeccce-eecCEEEEEEEeCCCCCCCCCCCeEEEEEEeecC------Cce-EEEEEE
Q 015649 29 NGSHQFKISGYSLSK-GMGIGKYIASDTF-IVGGYAWAVYFYPDGKSAEDNAAYVSLFIALASE------GTD-VRALFE 99 (403)
Q Consensus 29 ~~~~~w~I~nfs~~~-~~~~g~~~~S~~f-~~~g~~W~l~v~p~g~~~~~~~~~lslyL~~~~~------~w~-~~a~~~ 99 (403)
|+.|+|+|.|||+++ +++.|+.++||+| .+|||+|+|++||+|+.. .++|||+||++.++ +|+ +.++++
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~--~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t 78 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES--YPGYTGLYFHLCSGENDDVLEWPCPNRQAT 78 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC--CCCcceEEEEEecCCccccccCcceeEEEE
Confidence 578999999999985 6788999999999 899999999999999883 67899999999763 388 589999
Q ss_pred EEEeeCCCCcccceeeccccccccCC---------------ce----ec-------ccCccccccceecccccccccccC
Q 015649 100 LTLLDQSGKERHKVHTHFGRTLESGP---------------YA----LK-------YRGSMWGYKRFFKRTLLETSDYLK 153 (403)
Q Consensus 100 ~~ll~~~~~~~~~~~~~~~~~~~~~~---------------~~----f~-------~~~~~wG~~~fi~~~~L~~~~fl~ 153 (403)
++|+||........+.+ ++++..+ .. .. .++.+|||..|+++++|++..||+
T Consensus 79 ~~LlDQ~~~~~~r~~~~--~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~r~ylk 156 (167)
T cd03771 79 MTLLDQDPDIQQRMSNQ--RSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRRRDFLK 156 (167)
T ss_pred EEEECCCCcccccCcce--EEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhccCCCCc
Confidence 99999974322211111 1111111 00 11 144589999999999998888999
Q ss_pred CCcEEEEEEee
Q 015649 154 DDCLSVSCCVG 164 (403)
Q Consensus 154 ~d~l~i~~~v~ 164 (403)
||++.|+++++
T Consensus 157 ~dtl~i~~~~~ 167 (167)
T cd03771 157 GDDLIILLDFE 167 (167)
T ss_pred CCEEEEEEEeC
Confidence 99999998863
No 12
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.88 E-value=2.6e-22 Score=169.75 Aligned_cols=132 Identities=23% Similarity=0.345 Sum_probs=102.3
Q ss_pred eEEEEEEcCccCcccC--C-CCCeeeccceeec--CEEEEEEEeCCCCCCCCCCCeEEEEEEeecC------CceEEEEE
Q 015649 30 GSHQFKISGYSLSKGM--G-IGKYIASDTFIVG--GYAWAVYFYPDGKSAEDNAAYVSLFIALASE------GTDVRALF 98 (403)
Q Consensus 30 ~~~~w~I~nfs~~~~~--~-~g~~~~S~~f~~~--g~~W~l~v~p~g~~~~~~~~~lslyL~~~~~------~w~~~a~~ 98 (403)
|.|+|+|.+||..+.+ . .|+.+.|++|.+| ||.|+|++||||.. .+..+|+|+||++.++ .|++.+++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~ 79 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNG-SGEGSHLSVYIRVLPGEYDNLLEWPFSHRI 79 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCC-CCCCCEEEEEEEEecCCcccccCCceeeEE
Confidence 6899999999988763 2 5789999999999 99999999999987 4467899999999773 69999999
Q ss_pred EEEEeeCCCCc--cc-ceeeccccccccCCceec--------ccCccccccceecccccccccccCCCcEEEEEEee
Q 015649 99 ELTLLDQSGKE--RH-KVHTHFGRTLESGPYALK--------YRGSMWGYKRFFKRTLLETSDYLKDDCLSVSCCVG 164 (403)
Q Consensus 99 ~~~ll~~~~~~--~~-~~~~~~~~~~~~~~~~f~--------~~~~~wG~~~fi~~~~L~~~~fl~~d~l~i~~~v~ 164 (403)
+|+|+||.+.. .. .....+... .....|. ..+.+||+..|+++++|++++||+||+++|+|+|+
T Consensus 80 ~~~llDq~~~~~~~~~~~~~~~~~~--~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 80 TFTLLDQSDPSLSKPQHITETFTPD--PTWKNFQKPSASRLDESTLGFGYPKFISHEDLKKRNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEEECCCCCccccCcceEEEEEcC--CchhhhcCCcccccCCCCCccchhHeeEHHHHhhCCcccCCEEEEEEEeC
Confidence 99999998641 11 111111000 0012222 23456999999999999989999999999999884
No 13
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.88 E-value=4e-22 Score=164.90 Aligned_cols=124 Identities=27% Similarity=0.518 Sum_probs=100.0
Q ss_pred eeEEEEEEcCccCcccCCCCCeeeccceeecCEEEEEEEeCCCCCCCCCCCeEEEEEEeecC-CceEEEEEEEEEeeCCC
Q 015649 29 NGSHQFKISGYSLSKGMGIGKYIASDTFIVGGYAWAVYFYPDGKSAEDNAAYVSLFIALASE-GTDVRALFELTLLDQSG 107 (403)
Q Consensus 29 ~~~~~w~I~nfs~~~~~~~g~~~~S~~f~~~g~~W~l~v~p~g~~~~~~~~~lslyL~~~~~-~w~~~a~~~~~ll~~~~ 107 (403)
.++++|+|+|||.+++ .|+.++|++|.+||++|+|++||+|.. ++.++|||+||++.+. .|.+.++|+++|+||.+
T Consensus 4 ~~~~~~~I~~fS~~~~--~~~~~~S~~F~vgG~~W~i~~yP~G~~-~~~~~~lSl~L~l~~~~~~~~~~~~~l~llnq~~ 80 (132)
T cd03773 4 YDSATFTLENFSTLRQ--SADPVYSDPLNVDGLCWRLKVYPDGNG-EVRGNFLSVFLELCSGLGEASKYEYRVEMVHQAN 80 (132)
T ss_pred CcccEEEECChhhhhc--CCcceeCCCeEeCCccEEEEEECCCCC-CCCCCEEEEEEEeecCCCCceeEEEEEEEEcCCC
Confidence 5789999999998863 578999999999999999999999987 4467899999998764 57889999999999953
Q ss_pred CcccceeeccccccccCCceecccCccccccceecccccccccccCC--CcEEEEEEee
Q 015649 108 KERHKVHTHFGRTLESGPYALKYRGSMWGYKRFFKRTLLETSDYLKD--DCLSVSCCVG 164 (403)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~fi~~~~L~~~~fl~~--d~l~i~~~v~ 164 (403)
...... .. ..+.|.. +.+|||..|+++++|+++|||.| |+|+|+|.|.
T Consensus 81 ~~~~~~-~~-------~~~~f~~-~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 81 PTKNIK-RE-------FASDFEV-GECWGYNRFFRLDLLINEGYLLPENDTLILRFSVR 130 (132)
T ss_pred CccceE-Ee-------ccccccC-CCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEEe
Confidence 322211 11 1133432 46799999999999987899999 9999999884
No 14
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.88 E-value=2.1e-22 Score=170.19 Aligned_cols=132 Identities=28% Similarity=0.404 Sum_probs=100.8
Q ss_pred eEEEEEEcCccCccc---CCCCCeeeccceeec--CEEEEEEEeCCCCCCCCCCCeEEEEEEeecC------CceEEEEE
Q 015649 30 GSHQFKISGYSLSKG---MGIGKYIASDTFIVG--GYAWAVYFYPDGKSAEDNAAYVSLFIALASE------GTDVRALF 98 (403)
Q Consensus 30 ~~~~w~I~nfs~~~~---~~~g~~~~S~~f~~~--g~~W~l~v~p~g~~~~~~~~~lslyL~~~~~------~w~~~a~~ 98 (403)
|+|+|+|++||.++. .+.++.++|+.|.+| ||+|+|++||+|.. ++.++|||+||++.+. +|++.|+|
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~-~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~ 79 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDG-TGKGTHLSLFVHVMKGEYDALLEWPFRGKI 79 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCccccCCccceE
Confidence 589999999998865 256789999999999 99999999999986 3356899999998653 49999999
Q ss_pred EEEEeeCCCCcccce-eeccccccccCCceec-----ccCccccccceecccccccccccCCCcEEEEEEee
Q 015649 99 ELTLLDQSGKERHKV-HTHFGRTLESGPYALK-----YRGSMWGYKRFFKRTLLETSDYLKDDCLSVSCCVG 164 (403)
Q Consensus 99 ~~~ll~~~~~~~~~~-~~~~~~~~~~~~~~f~-----~~~~~wG~~~fi~~~~L~~~~fl~~d~l~i~~~v~ 164 (403)
+|+|+||.++...+. ...+.... ....|. .+..+|||.+|+++++|++.+||+||+++|+|+|.
T Consensus 80 ~~~l~d~~~~~~~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 80 TLTLLDQSDDSKRKHITETFMPDP--NSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEEECCCCccccCceEEEEEcCC--chHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEEC
Confidence 999999987411111 00100000 011221 24568999999999999878999999999999873
No 15
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.87 E-value=2.3e-22 Score=169.26 Aligned_cols=131 Identities=25% Similarity=0.307 Sum_probs=100.4
Q ss_pred eEEEEEEcCccCcc-cCCCCCe--eeccceee--cCEEEEEEEeCCCCCCCCCCCeEEEEEEeecC------CceEEEEE
Q 015649 30 GSHQFKISGYSLSK-GMGIGKY--IASDTFIV--GGYAWAVYFYPDGKSAEDNAAYVSLFIALASE------GTDVRALF 98 (403)
Q Consensus 30 ~~~~w~I~nfs~~~-~~~~g~~--~~S~~f~~--~g~~W~l~v~p~g~~~~~~~~~lslyL~~~~~------~w~~~a~~ 98 (403)
|.|+|+|.+||.++ .+..|+. ++|++|.+ |||+|+|++||+|.. ++..+|||+||++.+. +|++.+++
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~-~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~ 79 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPE-ARCPNYISLFVHLMQGENDSHLDWPFQGTI 79 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCcccCCccccee
Confidence 58999999999754 4677774 88999985 799999999999987 3467899999999653 49999999
Q ss_pred EEEEeeCCCCcccceeeccccccccCCceec-----ccCccccccceecccccccccccCCCcEEEEEEee
Q 015649 99 ELTLLDQSGKERHKVHTHFGRTLESGPYALK-----YRGSMWGYKRFFKRTLLETSDYLKDDCLSVSCCVG 164 (403)
Q Consensus 99 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~-----~~~~~wG~~~fi~~~~L~~~~fl~~d~l~i~~~v~ 164 (403)
+|+|+||.++....... +... .....|. ..+..|||.+|+++++|+.++||+||+++|+|+|.
T Consensus 80 ~~~lldq~~~~~~~~~~-~~~~--~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 80 TLTLLDQSEPRQNIHET-MMSK--PELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEEECCCcccCccEEE-EEcC--CChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 99999998743321111 0000 0012232 13457999999999999888999999999999873
No 16
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.87 E-value=8.2e-22 Score=163.16 Aligned_cols=117 Identities=24% Similarity=0.469 Sum_probs=96.4
Q ss_pred EEEEEEcCccCcccCCCCCeeeccceeecCEEEEEEEeCCCCCCCCCCCeEEEEEEeec---------CCceEEEEEEEE
Q 015649 31 SHQFKISGYSLSKGMGIGKYIASDTFIVGGYAWAVYFYPDGKSAEDNAAYVSLFIALAS---------EGTDVRALFELT 101 (403)
Q Consensus 31 ~~~w~I~nfs~~~~~~~g~~~~S~~f~~~g~~W~l~v~p~g~~~~~~~~~lslyL~~~~---------~~w~~~a~~~~~ 101 (403)
+|+|+|+|||.+ ++.+.|++|.+||++|+|.+||+|+.. .+|+|+||.+.+ .+|.+.|+|+++
T Consensus 2 ~f~w~I~~fS~~-----~~~~~S~~F~vGG~~W~l~~yP~G~~~---~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~ 73 (134)
T cd03775 2 SFTWRIKNWSEL-----EKKVHSPKFKCGGFEWRILLFPQGNSQ---TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALV 73 (134)
T ss_pred cEEEEECCcccC-----CcceeCCCEEECCeeEEEEEeCCCCCC---CCeEEEEEEecCcccccccCCCCCeEEEEEEEE
Confidence 589999999985 378999999999999999999999762 689999999853 358899999999
Q ss_pred EeeCCCCcccceeeccccccccCCceecccCccccccceecccccc------cccccCCCcEEEEEEe
Q 015649 102 LLDQSGKERHKVHTHFGRTLESGPYALKYRGSMWGYKRFFKRTLLE------TSDYLKDDCLSVSCCV 163 (403)
Q Consensus 102 ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~fi~~~~L~------~~~fl~~d~l~i~~~v 163 (403)
|+|+.+....... ...+.|.....+|||.+|+++++|+ .+|||+||+|+|++.|
T Consensus 74 l~n~~~~~~~~~~--------~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~ 133 (134)
T cd03775 74 ISNPGDPSIQLSN--------VAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYV 133 (134)
T ss_pred EEcCCCCccceEc--------cceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEE
Confidence 9999744321111 1235676667789999999999996 4799999999999876
No 17
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.84 E-value=2.2e-20 Score=156.32 Aligned_cols=135 Identities=22% Similarity=0.327 Sum_probs=100.4
Q ss_pred eeeeEEEEEEcCccCcccC-CC--CCeeeccceee--cCEEEEEEEeCCCCCCCCCCCeEEEEEEeecC------CceEE
Q 015649 27 TINGSHQFKISGYSLSKGM-GI--GKYIASDTFIV--GGYAWAVYFYPDGKSAEDNAAYVSLFIALASE------GTDVR 95 (403)
Q Consensus 27 ~~~~~~~w~I~nfs~~~~~-~~--g~~~~S~~f~~--~g~~W~l~v~p~g~~~~~~~~~lslyL~~~~~------~w~~~ 95 (403)
...|.|+|+|.||+++... .. ...++||+|+. +||+|+|++||||++ .+.+.|||+|+++.++ +|++.
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g-~~~g~~LSly~~l~~Ge~D~~L~WPf~ 94 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN 94 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEecCCcCcccCCcee
Confidence 4579999999999976543 22 34899999975 489999999999988 4567899999999874 39999
Q ss_pred EEEEEEEeeCCCCcccceeeccccccccCCc-e-ecccCccccccceeccccccc-ccccCCCcEEEEEEee
Q 015649 96 ALFELTLLDQSGKERHKVHTHFGRTLESGPY-A-LKYRGSMWGYKRFFKRTLLET-SDYLKDDCLSVSCCVG 164 (403)
Q Consensus 96 a~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~-f~~~~~~wG~~~fi~~~~L~~-~~fl~~d~l~i~~~v~ 164 (403)
.+++|+|+||++... .. ..+........+ + ...++..||+..|+++++|.. .+|++||++.|+|.|+
T Consensus 95 ~~itl~llDQ~~r~h-i~-~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~~~Yv~dDtlfIk~~Vd 164 (164)
T cd03778 95 QKVTLMLLDQNNREH-VI-DAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIVD 164 (164)
T ss_pred eEEEEEEECCCCCCc-ce-eEEEcCcchHhcCCCCcccccCcCcceEEEhhHccccCCcccCCeEEEEEEEC
Confidence 999999999975222 11 111111111111 1 123445699999999999964 7999999999999873
No 18
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.82 E-value=2.5e-19 Score=168.33 Aligned_cols=168 Identities=26% Similarity=0.402 Sum_probs=154.8
Q ss_pred CcccCCCCchHHHHHHhhhhCCCcccEEEEEcC-----eEEEEehhhhhccCHHHHHhhcCCCCCCCcceEEecCCCHHH
Q 015649 175 TYSIPVPPSDIGKQFGKLLEGGRFTDVNFEVDG-----ERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPV 249 (403)
Q Consensus 175 ~~~~~~p~~~~~~~~~~l~~~~~~sDv~~~v~~-----~~f~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~ 249 (403)
.+..+.+.+++......++++...+|+.|+|++ +.++|||.+|+..|.+|.+||+|++.+....+|.++|+.+.+
T Consensus 91 ~~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaa 170 (521)
T KOG2075|consen 91 IPNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAA 170 (521)
T ss_pred CcccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhH
Confidence 445677788899999999999999999999974 689999999999999999999999999888999999999999
Q ss_pred HHHHHhhhccCCCCCCcccccCCcccchHHHHHHHHHHhcccChHHHHHHHHHHHHccCChhhHHHHHHH-HHHcCcHHH
Q 015649 250 FKALLHFIYWDALPDMEDLVDLSPKWASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLAL-AEQHHCSQL 328 (403)
Q Consensus 250 f~~~L~~lY~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~i~~L~~~c~~~l~~~l~~~n~~~~l~~-A~~~~~~~L 328 (403)
|..+|+|||++.+. +..+++..++.+|++|.++.|.+.|.++|...+..+|++..+-- |..++-+.|
T Consensus 171 Fl~~L~flYsdev~------------~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~L 238 (521)
T KOG2075|consen 171 FLAFLRFLYSDEVK------------LAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSL 238 (521)
T ss_pred hHHHHHHHhcchhh------------hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHH
Confidence 99999999999887 88899999999999999999999999999998888887665555 999999999
Q ss_pred HHHHHHHhcCcccHHHHHcccchhHHHh
Q 015649 329 KAVCLKFIASPENLKAVMQTDGFEYLKE 356 (403)
Q Consensus 329 ~~~~~~~i~~~~~~~~v~~~~~f~~l~~ 356 (403)
...|++-|. .+++..+..++|.++..
T Consensus 239 i~~c~e~id--~~~~~al~~EGf~did~ 264 (521)
T KOG2075|consen 239 ISICLEVID--KSFEDALTPEGFCDIDS 264 (521)
T ss_pred HHHHHHHhh--hHHHhhhCccceeehhh
Confidence 999999999 99999999999988874
No 19
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.81 E-value=5e-19 Score=144.54 Aligned_cols=120 Identities=36% Similarity=0.622 Sum_probs=96.7
Q ss_pred eEEEEEEcCccCcccCCCCCeeeccceeecCEEEEEEEeCCCCCCCCCCCeEEEEEEeecC-----CceEEEEEEEEEee
Q 015649 30 GSHQFKISGYSLSKGMGIGKYIASDTFIVGGYAWAVYFYPDGKSAEDNAAYVSLFIALASE-----GTDVRALFELTLLD 104 (403)
Q Consensus 30 ~~~~w~I~nfs~~~~~~~g~~~~S~~f~~~g~~W~l~v~p~g~~~~~~~~~lslyL~~~~~-----~w~~~a~~~~~ll~ 104 (403)
++|+|+|.+|+. ..++.++|+.|.++|++|+|.+||+|... +.+|+|+||+|... .|++.++++|+|++
T Consensus 1 ~~~~~~i~~~~~----~~~~~~~S~~f~~~g~~W~l~~~p~~~~~--~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~ 74 (126)
T cd00121 1 GKHTWKIVNFSE----LEGESIYSPPFEVGGYKWRIRIYPNGDGE--SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVN 74 (126)
T ss_pred CEEEEEECCCCC----CCCcEEECCCEEEcCEeEEEEEEcCCCCC--CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEEC
Confidence 479999999998 34689999999999999999999999763 56899999999764 49999999999999
Q ss_pred CCCCcccceeeccccccccCCcee-cccCccccccceecccccccccccCCCcEEEEEEee
Q 015649 105 QSGKERHKVHTHFGRTLESGPYAL-KYRGSMWGYKRFFKRTLLETSDYLKDDCLSVSCCVG 164 (403)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~f-~~~~~~wG~~~fi~~~~L~~~~fl~~d~l~i~~~v~ 164 (403)
+++.+....... ..+ .....+|||.+|++|++|.+..++.||+++|+|+|.
T Consensus 75 ~~~~~~~~~~~~---------~~~~~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 75 QNGGKSLSKSFT---------HVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEVK 126 (126)
T ss_pred CCCCccceEecc---------CCcCCCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEEC
Confidence 984333221111 122 235678999999999999866568999999999873
No 20
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.80 E-value=1.2e-19 Score=145.34 Aligned_cols=107 Identities=31% Similarity=0.536 Sum_probs=94.9
Q ss_pred HHhhhhCCCcccEEEEEc-CeEEEEehhhhhccCHHHHHhhcCC-CCCCCcceEEecCCCHHHHHHHHhhhccCCCCCCc
Q 015649 189 FGKLLEGGRFTDVNFEVD-GERFAAHKLVLATRSPVFKAQLFGP-LKDQNTQCIKVEDMEVPVFKALLHFIYWDALPDME 266 (403)
Q Consensus 189 ~~~l~~~~~~sDv~~~v~-~~~f~~Hk~iLa~~S~~F~~~f~~~-~~e~~~~~i~l~d~~~~~f~~~L~~lY~~~~~~~~ 266 (403)
|+++++++.++|++|.++ +++|+|||.+|+++|+||+.||.+. +.+....+|.++++++++|..+|+|+|++.+.
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~--- 77 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIE--- 77 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEE---
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCccc---
Confidence 467788999999999999 8999999999999999999999988 56666678999999999999999999999986
Q ss_pred ccccCCcccch-HHHHHHHHHHhcccChHHHHHHHHHHHHcc
Q 015649 267 DLVDLSPKWAS-TLMAQHLLAAADRYALERLKLLCEAKLCED 307 (403)
Q Consensus 267 ~~~~~~~~~~~-~~~~~~ll~~Ad~~~i~~L~~~c~~~l~~~ 307 (403)
++ .+++.+++.+|++|+++.|+..|+++|.+.
T Consensus 78 ---------~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 78 ---------INSDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp ---------EE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 65 778999999999999999999999999764
No 21
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.80 E-value=2.1e-19 Score=150.04 Aligned_cols=168 Identities=25% Similarity=0.363 Sum_probs=141.2
Q ss_pred CchHHHHHHhhhhCCCcccEEEEEc---CeEEEEehhhhhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhc
Q 015649 182 PSDIGKQFGKLLEGGRFTDVNFEVD---GERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVFKALLHFIY 258 (403)
Q Consensus 182 ~~~~~~~~~~l~~~~~~sDv~~~v~---~~~f~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~lY 258 (403)
++.++.-...+++.+.|+|++|.++ ++.++|||.||++||.+.+-. +.. ...+.+..++|+++++|..+++|||
T Consensus 50 ~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wkfa--N~~-dekse~~~~dDad~Ea~~t~iRWIY 126 (280)
T KOG4591|consen 50 ISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKFA--NGG-DEKSEELDLDDADFEAFHTAIRWIY 126 (280)
T ss_pred HHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhhc--cCC-CcchhhhcccccCHHHHHHhheeee
Confidence 3566777788999999999999998 478999999999999987532 221 2234567888999999999999999
Q ss_pred cCCCCCCcccccCCcccchHHHHHHHHHHhcccChHHHHHHHHHHHHccCChhhHHHHHHHHHHcCcHHHHHHHHHHhcC
Q 015649 259 WDALPDMEDLVDLSPKWASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIAS 338 (403)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~i~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~ 338 (403)
|+++... .+++.+.++.++|++|+++.|+..|++-+...+..+||+.++++|++.++..|...|...|+
T Consensus 127 TDEidfk----------~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA- 195 (280)
T KOG4591|consen 127 TDEIDFK----------EDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIA- 195 (280)
T ss_pred ccccccc----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHH-
Confidence 9998643 56788999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHcccchhHHHhhChHHHHHHHHH
Q 015649 339 PENLKAVMQTDGFEYLKESCPSVLTELLQY 368 (403)
Q Consensus 339 ~~~~~~v~~~~~f~~l~~~~p~l~~ell~~ 368 (403)
.++..+-. .+| .++.|.++..+++.
T Consensus 196 -~~W~dL~~-a~F---aqMs~aLLYklId~ 220 (280)
T KOG4591|consen 196 -GAWDDLGK-ADF---AQMSAALLYKLIDG 220 (280)
T ss_pred -hhccccCh-HHH---HhccHHHHHHHHcC
Confidence 88876654 334 44556777776653
No 22
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.76 E-value=2.4e-18 Score=143.29 Aligned_cols=133 Identities=21% Similarity=0.375 Sum_probs=99.5
Q ss_pred eeEEEEEEcCccCccc-CCCCCeeeccceeec-CEEEEEEEeCCCCCCCCCCCeEEEEEEeecCC------ceE-EEEEE
Q 015649 29 NGSHQFKISGYSLSKG-MGIGKYIASDTFIVG-GYAWAVYFYPDGKSAEDNAAYVSLFIALASEG------TDV-RALFE 99 (403)
Q Consensus 29 ~~~~~w~I~nfs~~~~-~~~g~~~~S~~f~~~-g~~W~l~v~p~g~~~~~~~~~lslyL~~~~~~------w~~-~a~~~ 99 (403)
|+.++|+|.||+++.+ ...+..++||+|+.. ||+.+|++|+||++..+.+.|+|||+++++++ |++ .-+++
T Consensus 1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it 80 (167)
T cd03783 1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI 80 (167)
T ss_pred CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence 4679999999987554 346789999999875 99999999999987445678999999998853 995 57999
Q ss_pred EEEeeCCCCcccceeeccccccccCC----------cee--------------cccCccccccceecccccccccccCCC
Q 015649 100 LTLLDQSGKERHKVHTHFGRTLESGP----------YAL--------------KYRGSMWGYKRFFKRTLLETSDYLKDD 155 (403)
Q Consensus 100 ~~ll~~~~~~~~~~~~~~~~~~~~~~----------~~f--------------~~~~~~wG~~~fi~~~~L~~~~fl~~d 155 (403)
++|+||+.......+. .++++..+ ..| ..++.++||+.|++++.|++.+||+||
T Consensus 81 l~llDQ~~~~~~r~~~--~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~r~yikdD 158 (167)
T cd03783 81 ITVLDQDPDVRLRMSS--SRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRRRSFLKND 158 (167)
T ss_pred EEEEcCCcchhhcccc--ceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhhCCcccCC
Confidence 9999997522211111 01111000 001 124568999999999999889999999
Q ss_pred cEEEEEEe
Q 015649 156 CLSVSCCV 163 (403)
Q Consensus 156 ~l~i~~~v 163 (403)
++.|.+++
T Consensus 159 tlfI~~~~ 166 (167)
T cd03783 159 DLIIFVDF 166 (167)
T ss_pred eEEEEEec
Confidence 99998876
No 23
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.74 E-value=1e-17 Score=135.75 Aligned_cols=113 Identities=30% Similarity=0.535 Sum_probs=90.3
Q ss_pred EcCccCcccCCCCCeeeccceeecCEEEEEEEeCCCCCCCCCCCeEEEEEEeecC------CceEEEEEEEEEeeCCCCc
Q 015649 36 ISGYSLSKGMGIGKYIASDTFIVGGYAWAVYFYPDGKSAEDNAAYVSLFIALASE------GTDVRALFELTLLDQSGKE 109 (403)
Q Consensus 36 I~nfs~~~~~~~g~~~~S~~f~~~g~~W~l~v~p~g~~~~~~~~~lslyL~~~~~------~w~~~a~~~~~ll~~~~~~ 109 (403)
|.|||++. ..+..+.|+.|.++|++|+|.+||+|+ ++++++||+|... .|++.+++++.++++.+..
T Consensus 1 i~nfs~l~--~~~~~~~s~~~~~~g~~W~l~~~~~~~-----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 73 (119)
T PF00917_consen 1 IKNFSKLK--EGEEYSSSFVFSHGGYPWRLKVYPKGN-----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKS 73 (119)
T ss_dssp ETTGGGHH--TSEEEEEEEESSTTSEEEEEEEETTES-----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCE
T ss_pred CcccceEe--CCCcEECCCeEEECCEEEEEEEEeCCC-----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCc
Confidence 78999987 233455569999999999999999976 4799999999764 6999999999999998876
Q ss_pred ccceeeccccccccCCceecccCccccccceecccccccccccCCCcEEEEEEeee
Q 015649 110 RHKVHTHFGRTLESGPYALKYRGSMWGYKRFFKRTLLETSDYLKDDCLSVSCCVGV 165 (403)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~fi~~~~L~~~~fl~~d~l~i~~~v~i 165 (403)
..+... .+.|. ...+|||.+|++|++|.+..|+.||+++|+|+|.|
T Consensus 74 ~~~~~~---------~~~F~-~~~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 74 ISKRIK---------SHSFN-NPSSWGWSSFISWEDLEDPYFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEEEEE---------CEEEC-TTSEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEEE
T ss_pred ceeeee---------eeEEe-eecccchhheeEHHHhCccCCeECCEEEEEEEEEC
Confidence 322211 24454 34789999999999997666999999999999976
No 24
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.74 E-value=1.8e-17 Score=152.42 Aligned_cols=163 Identities=21% Similarity=0.286 Sum_probs=146.2
Q ss_pred HHhhhhCCCcccEEEEEcCeEEEEehhhhhccCHHHHHhhcCCCCCCCcceEEec----CCCHHHHHHHHhhhccCCCCC
Q 015649 189 FGKLLEGGRFTDVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVE----DMEVPVFKALLHFIYWDALPD 264 (403)
Q Consensus 189 ~~~l~~~~~~sDv~~~v~~~~f~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~----d~~~~~f~~~L~~lY~~~~~~ 264 (403)
+..|+.+++.|||.+.+-|++++.||..|. +|+||.+||.|.++|++...|.++ .|+..+|..++.-+|.+++.
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve- 137 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE- 137 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee-
Confidence 567888999999999999999999999998 999999999999999999887775 68999999999999999997
Q ss_pred CcccccCCcccchHHHHHHHHHHhcccChHHHHHHHHHHHHccCChhhHHHHHHHHHHcCcHHHHHHHHHHhcCcccHHH
Q 015649 265 MEDLVDLSPKWASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKA 344 (403)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~ll~~Ad~~~i~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~ 344 (403)
|..+.+..+|++|..++++.|.+.|.+.+++.+++++++..+..|.+|+++.+++.|++++. .|+-.
T Consensus 138 -----------I~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~--~nl~~ 204 (488)
T KOG4682|consen 138 -----------IKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLL--NNLMT 204 (488)
T ss_pred -----------ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHH--HhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999 88888
Q ss_pred HHcccchhHHHhhChHHHHHHHHHHHhhC
Q 015649 345 VMQTDGFEYLKESCPSVLTELLQYVAKIG 373 (403)
Q Consensus 345 v~~~~~f~~l~~~~p~l~~ell~~~~~~~ 373 (403)
+....-+.+ +-.+|+..+++..
T Consensus 205 i~~~q~l~e-------i~~~Lm~~ll~Sp 226 (488)
T KOG4682|consen 205 IQNVQLLKE-------ISINLMKQLLGSP 226 (488)
T ss_pred hhhHHHHHh-------cCHHHHHHHhCCC
Confidence 777663333 3355555555533
No 25
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.72 E-value=3.5e-17 Score=135.47 Aligned_cols=133 Identities=21% Similarity=0.345 Sum_probs=99.5
Q ss_pred eeEEEEEEcCccCccc-CCCCCeeeccceee-cCEEEEEEEeCCCCCCCCCCCeEEEEEEeecCC------ceEE-EEEE
Q 015649 29 NGSHQFKISGYSLSKG-MGIGKYIASDTFIV-GGYAWAVYFYPDGKSAEDNAAYVSLFIALASEG------TDVR-ALFE 99 (403)
Q Consensus 29 ~~~~~w~I~nfs~~~~-~~~g~~~~S~~f~~-~g~~W~l~v~p~g~~~~~~~~~lslyL~~~~~~------w~~~-a~~~ 99 (403)
|+.|+|+|.||+++.+ .+.+..++||+|+. .||+.++++|+||++. + ++|||+|+++.+++ |++. -+++
T Consensus 1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~-~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit 78 (167)
T cd03782 1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDD-Y-PGNLAIYLHLTSGPNDDQLQWPCPWQQAT 78 (167)
T ss_pred CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCC-C-CCEEEEEEEEeccCCCccccCCCcCCeEE
Confidence 5689999999997654 35678999999964 6999999999999984 3 67999999998853 9999 8999
Q ss_pred EEEeeCCCCccccee--e--ccccccccC---Cc--e--------ec-------ccCccccccceecccccccccccCCC
Q 015649 100 LTLLDQSGKERHKVH--T--HFGRTLESG---PY--A--------LK-------YRGSMWGYKRFFKRTLLETSDYLKDD 155 (403)
Q Consensus 100 ~~ll~~~~~~~~~~~--~--~~~~~~~~~---~~--~--------f~-------~~~~~wG~~~fi~~~~L~~~~fl~~d 155 (403)
++|+||+.+.....+ . .+.....+. .+ . .+ +++.++||+.|++++.|++..||+||
T Consensus 79 ~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~r~yikdD 158 (167)
T cd03782 79 MMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRSRDFIKGD 158 (167)
T ss_pred EEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhhcCcccCC
Confidence 999999752221111 1 111111111 11 0 01 23678999999999999889999999
Q ss_pred cEEEEEEe
Q 015649 156 CLSVSCCV 163 (403)
Q Consensus 156 ~l~i~~~v 163 (403)
++.|-+++
T Consensus 159 ~ifi~~~~ 166 (167)
T cd03782 159 DVIFLLTM 166 (167)
T ss_pred eEEEEEec
Confidence 99987765
No 26
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.67 E-value=1.9e-16 Score=120.99 Aligned_cols=90 Identities=39% Similarity=0.565 Sum_probs=83.9
Q ss_pred cEEEEEcCeEEEEehhhhhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhccCCCCCCcccccCCcccchHH
Q 015649 200 DVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVFKALLHFIYWDALPDMEDLVDLSPKWASTL 279 (403)
Q Consensus 200 Dv~~~v~~~~f~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~lY~~~~~~~~~~~~~~~~~~~~~ 279 (403)
|+++.++|+.|+|||.+|+++|+||+.||.+++.+.....+.++++++.+|+.+|+|+|++.+. +...
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~------------~~~~ 68 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLD------------LPEE 68 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceee------------cCHH
Confidence 7889999999999999999999999999998887777889999999999999999999999886 6667
Q ss_pred HHHHHHHHhcccChHHHHHHHH
Q 015649 280 MAQHLLAAADRYALERLKLLCE 301 (403)
Q Consensus 280 ~~~~ll~~Ad~~~i~~L~~~c~ 301 (403)
.+.+++.+|++|+++.|+..|+
T Consensus 69 ~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 69 NVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHHHHHHHHCcHHHHhhhC
Confidence 8999999999999999999884
No 27
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.64 E-value=3.1e-16 Score=155.20 Aligned_cols=165 Identities=20% Similarity=0.331 Sum_probs=133.1
Q ss_pred cccEEEEE-cCeEEEEehhhhhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhccC-CCCCCcccccCCccc
Q 015649 198 FTDVNFEV-DGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVFKALLHFIYWD-ALPDMEDLVDLSPKW 275 (403)
Q Consensus 198 ~sDv~~~v-~~~~f~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~lY~~-~~~~~~~~~~~~~~~ 275 (403)
.-|+.|.+ +|+.+.|||++|++|+.||..||..-+.|+..-.+.+-.+..+.++.+|+|+|.. ......+ .
T Consensus 710 ~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~-------~ 782 (1267)
T KOG0783|consen 710 TMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKD-------L 782 (1267)
T ss_pred ceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhc-------c
Confidence 33666655 6788999999999999999999998888888766666677799999999999954 3321111 1
Q ss_pred chHHHHHHHHHHhcccChHHHHHHHHHHHHccCChhhHHHHHHHHHHcCcHHHHHHHHHHhcCcccHHHHHcccchhHHH
Q 015649 276 ASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKAVMQTDGFEYLK 355 (403)
Q Consensus 276 ~~~~~~~~ll~~Ad~~~i~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~v~~~~~f~~l~ 355 (403)
-..+.+.++|.+||.|-+.+|+..||..|.+.++..++..++++|..|++..|+..|++||+ .|+..++......++.
T Consensus 783 ~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic--~N~~~~Learsi~~~d 860 (1267)
T KOG0783|consen 783 KESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFIC--HNIEFFLEARSISEWD 860 (1267)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHH--HhHHHHHHhccHhhhc
Confidence 34567899999999999999999999999999999999999999999999999999999999 9999999776655555
Q ss_pred hhChHHHHHHHHHHHh
Q 015649 356 ESCPSVLTELLQYVAK 371 (403)
Q Consensus 356 ~~~p~l~~ell~~~~~ 371 (403)
.....-+.+..++++.
T Consensus 861 g~~LK~l~~~yrkm~~ 876 (1267)
T KOG0783|consen 861 GFHLKKLAQRYRKMLS 876 (1267)
T ss_pred chHHHHHHHHHHHHhh
Confidence 4333334444555554
No 28
>smart00061 MATH meprin and TRAF homology.
Probab=99.56 E-value=2.3e-14 Score=110.98 Aligned_cols=89 Identities=22% Similarity=0.341 Sum_probs=71.8
Q ss_pred EEEEEcCccCcccCCCCCeeeccceeecCEEEEEEEeCCCCCCCCCCCeEEEEEEeecC-----CceEEEEEEEEEeeCC
Q 015649 32 HQFKISGYSLSKGMGIGKYIASDTFIVGGYAWAVYFYPDGKSAEDNAAYVSLFIALASE-----GTDVRALFELTLLDQS 106 (403)
Q Consensus 32 ~~w~I~nfs~~~~~~~g~~~~S~~f~~~g~~W~l~v~p~g~~~~~~~~~lslyL~~~~~-----~w~~~a~~~~~ll~~~ 106 (403)
++|.|+||+.+ ..|+.++|++|.++|++|+|.+||+ .+|||+||.|... +|++.|+++++|++++
T Consensus 2 ~~~~~~~~~~~---~~~~~~~S~~f~~~g~~W~i~~~p~-------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~ 71 (95)
T smart00061 2 LSHTFKNVSRL---EEGESYFSPSEEHFNIPWRLKIYRK-------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQN 71 (95)
T ss_pred ceeEEEchhhc---ccCceEeCChhEEcCceeEEEEEEc-------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCC
Confidence 57999999976 3568999999999999999999998 2789999999653 5899999999999998
Q ss_pred CCcccceeeccccccccCCceecccCcccccccee
Q 015649 107 GKERHKVHTHFGRTLESGPYALKYRGSMWGYKRFF 141 (403)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~fi 141 (403)
++...+. ..+.|.. ..+|||.+|+
T Consensus 72 ~~~~~~~----------~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 72 GKSLSKK----------DKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred CCEEeee----------eeEEEcC-CCccceeeEC
Confidence 7544111 2255654 6789998875
No 29
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.47 E-value=1.1e-12 Score=123.64 Aligned_cols=235 Identities=27% Similarity=0.337 Sum_probs=175.8
Q ss_pred EEEcCccCcccCCCCCeeeccceeecCEEEEEEEeCCCCCCCCCCCeEEEEEEeecC-CceEEEEEEEEEeeCCCCcc-c
Q 015649 34 FKISGYSLSKGMGIGKYIASDTFIVGGYAWAVYFYPDGKSAEDNAAYVSLFIALASE-GTDVRALFELTLLDQSGKER-H 111 (403)
Q Consensus 34 w~I~nfs~~~~~~~g~~~~S~~f~~~g~~W~l~v~p~g~~~~~~~~~lslyL~~~~~-~w~~~a~~~~~ll~~~~~~~-~ 111 (403)
|.+.+|+... ..++|..|..+|..|++.+||.|+ +++.|+..... +|.+.+.+.+.+.|+..... .
T Consensus 8 ~~~~~~~~~~-----l~~ys~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~v~n~~~~~~~~ 75 (297)
T KOG1987|consen 8 WVISNFSSVG-----LVIYSNGFVKGGCKWRLSAYPKGN-------YLSLTLSVSDSPGWERYAKLRLTVVNQKSEKYLS 75 (297)
T ss_pred eeeccCcchh-----hhccccceeecCceEEEEEecCCC-------EEEEEEEeccCCCcceeEEEEEEEccCCCcceee
Confidence 9999998665 578999999999999999999975 57888877554 79999999999999976532 1
Q ss_pred ceeeccccccccCCceeccc--CccccccceecccccccccccCCCcEEEEEEeeeeecccCCCCCcccCCCCchHHHHH
Q 015649 112 KVHTHFGRTLESGPYALKYR--GSMWGYKRFFKRTLLETSDYLKDDCLSVSCCVGVVKSYTEGPKTYSIPVPPSDIGKQF 189 (403)
Q Consensus 112 ~~~~~~~~~~~~~~~~f~~~--~~~wG~~~fi~~~~L~~~~fl~~d~l~i~~~v~i~~~~~~~~~~~~~~~p~~~~~~~~ 189 (403)
.... +...+..+ -..||+..+++...+. .+
T Consensus 76 ~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~------------~~---------------------------- 107 (297)
T KOG1987|consen 76 TVEE--------GFSWFRFNKVLKEWGFGKMLPLTLLI------------DC---------------------------- 107 (297)
T ss_pred eeee--------eEEeccccccccccCcccccChHHhh------------cc----------------------------
Confidence 1100 00111111 2345543333222221 00
Q ss_pred HhhhhCCCcccEEEEEcCeEEEEehhhhhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhccCCCCCCcccc
Q 015649 190 GKLLEGGRFTDVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVFKALLHFIYWDALPDMEDLV 269 (403)
Q Consensus 190 ~~l~~~~~~sDv~~~v~~~~f~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~lY~~~~~~~~~~~ 269 (403)
.+..+.+|+.+++++|++|+.|+..+..+.....+.+.+.++..++.+..|.|...-.
T Consensus 108 ----------------~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~------ 165 (297)
T KOG1987|consen 108 ----------------SNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQV------ 165 (297)
T ss_pred ----------------cCcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccch------
Confidence 0455999999999999999999987766666666788899999999999999997653
Q ss_pred cCCcccchHHHHH---HHHHHhcccChHHHHHHHHHHHHccCChhhHHHHHHHHHHcCcHHHHHHHHHHhcCcccHHHHH
Q 015649 270 DLSPKWASTLMAQ---HLLAAADRYALERLKLLCEAKLCEDVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKAVM 346 (403)
Q Consensus 270 ~~~~~~~~~~~~~---~ll~~Ad~~~i~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~v~ 346 (403)
...+... .++..|.+++.+.|+..|+..+...+...++...+..+..+++..+...|..++.+...+..+.
T Consensus 166 ------~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~ 239 (297)
T KOG1987|consen 166 ------SSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLE 239 (297)
T ss_pred ------HHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHH
Confidence 2333343 7888999999999999999999998888888899999999999999999999999444777777
Q ss_pred cccchhHHHh
Q 015649 347 QTDGFEYLKE 356 (403)
Q Consensus 347 ~~~~f~~l~~ 356 (403)
...++....+
T Consensus 240 ~~~~~~~~k~ 249 (297)
T KOG1987|consen 240 KKLNEVKEKK 249 (297)
T ss_pred HHHHHHHHhh
Confidence 6555544433
No 30
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1e-11 Score=122.70 Aligned_cols=124 Identities=21% Similarity=0.422 Sum_probs=101.4
Q ss_pred eeeeEEEEEEcCccCcccCCCCCeeeccceeecCEEEEEEEeCCCCCCCCCCCeEEEEEEeec--------CCceEEEEE
Q 015649 27 TINGSHQFKISGYSLSKGMGIGKYIASDTFIVGGYAWAVYFYPDGKSAEDNAAYVSLFIALAS--------EGTDVRALF 98 (403)
Q Consensus 27 ~~~~~~~w~I~nfs~~~~~~~g~~~~S~~f~~~g~~W~l~v~p~g~~~~~~~~~lslyL~~~~--------~~w~~~a~~ 98 (403)
...-++.|+|.+|+.+. +++.||+|.+||+.|+|.++|+|+++. + +|+||+... ..|.|.|+|
T Consensus 36 ~~~~sftW~vk~wsel~-----~k~~Sp~F~vg~~twki~lfPqG~nq~---~-~sVyLe~~pqe~e~~~gk~~~ccaqF 106 (1089)
T COG5077 36 LLEMSFTWKVKRWSELA-----KKVESPPFSVGGHTWKIILFPQGNNQC---N-VSVYLEYEPQELEETGGKYYDCCAQF 106 (1089)
T ss_pred HhhcccceecCChhhhh-----hhccCCcccccCeeEEEEEecccCCcc---c-cEEEEEeccchhhhhcCcchhhhhhe
Confidence 45678999999999887 478899999999999999999998842 3 999998854 239999999
Q ss_pred EEEEeeCCCCcccceeeccccccccCCceecccCccccccceecccccc--c---ccccCCCcEEEEEEeeeee
Q 015649 99 ELTLLDQSGKERHKVHTHFGRTLESGPYALKYRGSMWGYKRFFKRTLLE--T---SDYLKDDCLSVSCCVGVVK 167 (403)
Q Consensus 99 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~fi~~~~L~--~---~~fl~~d~l~i~~~v~i~~ 167 (403)
.+.|-+......... ++.+|+|+....+|||.+|+.+..|. . -.|+.+|++.|.+.|.|.+
T Consensus 107 af~Is~p~~pti~~i--------N~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlk 172 (1089)
T COG5077 107 AFDISNPKYPTIEYI--------NKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLK 172 (1089)
T ss_pred eeecCCCCCCchhhh--------hcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEe
Confidence 999998865333222 23458898889999999999988882 2 2489999999999999987
No 31
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.77 E-value=1.3e-08 Score=102.17 Aligned_cols=122 Identities=30% Similarity=0.432 Sum_probs=82.1
Q ss_pred CCCchHHHHHHhhhhCC----CcccEEEEEcCeEEEEehhhhhccCHHHHHhhcCCCCC--C----------CcceEEec
Q 015649 180 VPPSDIGKQFGKLLEGG----RFTDVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKD--Q----------NTQCIKVE 243 (403)
Q Consensus 180 ~p~~~~~~~~~~l~~~~----~~sDv~~~v~~~~f~~Hk~iLa~~S~~F~~~f~~~~~e--~----------~~~~i~l~ 243 (403)
+|.+.+...|..|+... .+.||+|.||++.|+|||.||++||++|+.+|...... . .-..|.++
T Consensus 536 ~~ss~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve 615 (1267)
T KOG0783|consen 536 AASSNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVE 615 (1267)
T ss_pred cccccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeec
Confidence 45666778888888654 46799999999999999999999999999999543221 1 11345688
Q ss_pred CCCHHHHHHHHhhhccCCC--C-CCcc-cccCCcc-----cchHHHHHHHHHHhcccChHHHHHHHH
Q 015649 244 DMEVPVFKALLHFIYWDAL--P-DMED-LVDLSPK-----WASTLMAQHLLAAADRYALERLKLLCE 301 (403)
Q Consensus 244 d~~~~~f~~~L~~lY~~~~--~-~~~~-~~~~~~~-----~~~~~~~~~ll~~Ad~~~i~~L~~~c~ 301 (403)
++.+..|+.+|+|||++.. | ..++ .+..-++ .-.......+..++.+|++..|.....
T Consensus 616 ~i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~ 682 (1267)
T KOG0783|consen 616 DIPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSV 682 (1267)
T ss_pred cCCHHHHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhh
Confidence 9999999999999999853 2 1111 0000000 001112334777788888777765443
No 32
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.63 E-value=9.1e-08 Score=88.32 Aligned_cols=133 Identities=20% Similarity=0.217 Sum_probs=110.6
Q ss_pred eEEEEehhhhhccCHHHHHhhcCCCCCCC-c---ceEEecCCCHHHHHHHHhhhccCCCCCCcccccCCcccchHHHHHH
Q 015649 208 ERFAAHKLVLATRSPVFKAQLFGPLKDQN-T---QCIKVEDMEVPVFKALLHFIYWDALPDMEDLVDLSPKWASTLMAQH 283 (403)
Q Consensus 208 ~~f~~Hk~iLa~~S~~F~~~f~~~~~e~~-~---~~i~l~d~~~~~f~~~L~~lY~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (403)
.+++||+++++ |..||+.||.|++.|+. . ....++.....+.+..++|+|++... +..+-+.+
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~td------------i~~~~A~d 367 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTD------------IIFDVASD 367 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhccccc------------chHHHHhh
Confidence 45999999999 89999999999998854 2 34556677888999999999999887 77888999
Q ss_pred HHHHhcccChH--H-HHHHHHHHHHcc---CChhhHHHHHHHHHHcCcHHHHHHHHHHhcCcccHHHHHcccchhHHH
Q 015649 284 LLAAADRYALE--R-LKLLCEAKLCED---VAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKAVMQTDGFEYLK 355 (403)
Q Consensus 284 ll~~Ad~~~i~--~-L~~~c~~~l~~~---l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~v~~~~~f~~l~ 355 (403)
++.+|+++.+. + |+.++...|.+. ++.-++..++.++.......|...+..++. .|+..+...|++....
T Consensus 368 vll~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a--~hl~~l~~dPe~~~~~ 443 (516)
T KOG0511|consen 368 VLLFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEA--RHLLLLLPDPEGDSSL 443 (516)
T ss_pred HHHHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHhcCCchhhHHH
Confidence 99999998665 3 566666556554 345578999999999999999999999999 9999999999988753
No 33
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.46 E-value=1.6e-07 Score=83.14 Aligned_cols=133 Identities=23% Similarity=0.292 Sum_probs=89.9
Q ss_pred chHHHHHHhhhhCCCc-ccEEEEE-cC--------------eEEEEehhhhhccCHHHHHhhcCCCCCC---------Cc
Q 015649 183 SDIGKQFGKLLEGGRF-TDVNFEV-DG--------------ERFAAHKLVLATRSPVFKAQLFGPLKDQ---------NT 237 (403)
Q Consensus 183 ~~~~~~~~~l~~~~~~-sDv~~~v-~~--------------~~f~~Hk~iLa~~S~~F~~~f~~~~~e~---------~~ 237 (403)
..+..++..|++..-. -|+.+.+ +| .++.|||+|.++||++|+.++.....+. ..
T Consensus 220 kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~P 299 (401)
T KOG2838|consen 220 KKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRP 299 (401)
T ss_pred hhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCC
Confidence 3455566677765543 4454443 22 3699999999999999999985433222 22
Q ss_pred ceEEecC-CCHHHHH-HHHhhhccCCCCCCccc----------------ccCCcccchHHHHHHHHHHhcccChHHHHHH
Q 015649 238 QCIKVED-MEVPVFK-ALLHFIYWDALPDMEDL----------------VDLSPKWASTLMAQHLLAAADRYALERLKLL 299 (403)
Q Consensus 238 ~~i~l~d-~~~~~f~-~~L~~lY~~~~~~~~~~----------------~~~~~~~~~~~~~~~ll~~Ad~~~i~~L~~~ 299 (403)
+.|.+++ |-|.+|. .+|+++||+.+...-.. +...++......+++|+.+|-+|.++.|.+.
T Consensus 300 kRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa 379 (401)
T KOG2838|consen 300 KRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQA 379 (401)
T ss_pred ceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577765 5677766 78899999887422110 0111223456678899999999999999999
Q ss_pred HHHHHHccCChhhHHH
Q 015649 300 CEAKLCEDVAINTVAT 315 (403)
Q Consensus 300 c~~~l~~~l~~~n~~~ 315 (403)
|+..+......++...
T Consensus 380 ~e~Vir~acaadlsn~ 395 (401)
T KOG2838|consen 380 CEDVIRKACAADLSNG 395 (401)
T ss_pred HHHHHHhhhhhhcccc
Confidence 9999988766555443
No 34
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.33 E-value=6.7e-07 Score=79.21 Aligned_cols=107 Identities=19% Similarity=0.198 Sum_probs=80.7
Q ss_pred CCCCchHHHHHHhhhhCCCcccEEEEEcCeEEEEehhhhhccCHHHHHhhcCCCCCCC--cceEEecCCCHHHHHHHHhh
Q 015649 179 PVPPSDIGKQFGKLLEGGRFTDVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKDQN--TQCIKVEDMEVPVFKALLHF 256 (403)
Q Consensus 179 ~~p~~~~~~~~~~l~~~~~~sDv~~~v~~~~f~~Hk~iLa~~S~~F~~~f~~~~~e~~--~~~i~l~d~~~~~f~~~L~~ 256 (403)
..|..++.++|...++..-..|+-|+.....|+|||++|++|||+|+.+.+....... .-.+.+-+++-.+|+++|+|
T Consensus 111 R~ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~ 190 (401)
T KOG2838|consen 111 RKEANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHS 190 (401)
T ss_pred CcchhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHH
Confidence 3456788999999988888999999999999999999999999999998865432221 12455668899999999999
Q ss_pred hccCCCCCCcccccCCcccchHHHHHHHHHHhcccChH
Q 015649 257 IYWDALPDMEDLVDLSPKWASTLMAQHLLAAADRYALE 294 (403)
Q Consensus 257 lY~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Ad~~~i~ 294 (403)
+|+++....+ ..-.+..-|-++..-|+..
T Consensus 191 l~tgEfgmEd---------~~fqn~diL~QL~edFG~~ 219 (401)
T KOG2838|consen 191 LITGEFGMED---------LGFQNSDILEQLCEDFGCF 219 (401)
T ss_pred HHhcccchhh---------cCCchHHHHHHHHHhhCCc
Confidence 9999875222 2333455555566666554
No 35
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.11 E-value=2.2e-05 Score=69.43 Aligned_cols=96 Identities=25% Similarity=0.362 Sum_probs=80.0
Q ss_pred EEEEEcCeEEEEehhhhhccCHHHHHhhcCCCC-CC-CcceEEecCCCHHHHHHHHhhhccCCCCCCcccccCCcccchH
Q 015649 201 VNFEVDGERFAAHKLVLATRSPVFKAQLFGPLK-DQ-NTQCIKVEDMEVPVFKALLHFIYWDALPDMEDLVDLSPKWAST 278 (403)
Q Consensus 201 v~~~v~~~~f~~Hk~iLa~~S~~F~~~f~~~~~-e~-~~~~i~l~d~~~~~f~~~L~~lY~~~~~~~~~~~~~~~~~~~~ 278 (403)
|.+.|||..|..++.-|.-...+|++|+..+.. +. ..+.|-| |=+|..|..+|+||..|..+.. .+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LP----------e~~ 75 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLP----------ESE 75 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCc----------cch
Confidence 558899999999999999999999999988753 22 2344555 6699999999999997776522 567
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHcc
Q 015649 279 LMAQHLLAAADRYALERLKLLCEAKLCED 307 (403)
Q Consensus 279 ~~~~~ll~~Ad~~~i~~L~~~c~~~l~~~ 307 (403)
..+.+|+.=|.+|.++.|.++|+..|...
T Consensus 76 kel~El~~EA~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 76 KELKELLREAEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhhc
Confidence 78999999999999999999999987654
No 36
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.76 E-value=2.8e-05 Score=59.87 Aligned_cols=88 Identities=22% Similarity=0.343 Sum_probs=65.7
Q ss_pred EEEEEcCeEEEEehhhhh-ccCHHHHHhhcCC---CCCCCcceEEecCCCHHHHHHHHhhhcc-CCCCCCcccccCCccc
Q 015649 201 VNFEVDGERFAAHKLVLA-TRSPVFKAQLFGP---LKDQNTQCIKVEDMEVPVFKALLHFIYW-DALPDMEDLVDLSPKW 275 (403)
Q Consensus 201 v~~~v~~~~f~~Hk~iLa-~~S~~F~~~f~~~---~~e~~~~~i~l~d~~~~~f~~~L~~lY~-~~~~~~~~~~~~~~~~ 275 (403)
|.|.|||+.|.+-+..|. ....+|..|+.+. ........+-| |-+|..|+.+|+|+.+ +.++..
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~---------- 69 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIP---------- 69 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB-------------
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCC----------
Confidence 678999999999999999 5467999999864 33445566766 6799999999999999 565521
Q ss_pred chHHHHHHHHHHhcccChHHH-HHHH
Q 015649 276 ASTLMAQHLLAAADRYALERL-KLLC 300 (403)
Q Consensus 276 ~~~~~~~~ll~~Ad~~~i~~L-~~~c 300 (403)
....+..++.-|++|+++.+ ++.|
T Consensus 70 -~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 70 -DEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp -TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred -CchhHHHHHHHHHHcCCCccccCCC
Confidence 23457889999999999988 6655
No 37
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.60 E-value=0.00051 Score=51.23 Aligned_cols=89 Identities=19% Similarity=0.275 Sum_probs=63.3
Q ss_pred EEEEE-cCeEEEEehhhhhccCHHHHHhhcCC--CCCCCcceEEecCCCHHHHHHHHhhh-ccCCCCCCcccccCCcccc
Q 015649 201 VNFEV-DGERFAAHKLVLATRSPVFKAQLFGP--LKDQNTQCIKVEDMEVPVFKALLHFI-YWDALPDMEDLVDLSPKWA 276 (403)
Q Consensus 201 v~~~v-~~~~f~~Hk~iLa~~S~~F~~~f~~~--~~e~~~~~i~l~d~~~~~f~~~L~~l-Y~~~~~~~~~~~~~~~~~~ 276 (403)
|.++. +|.+|-..|.+ |.-|+-.++||.|+ +.+...+++.+.++....++.+.+|+ |.-+..... .......+
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s--~eiPeF~I 95 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSS--TEIPEFDI 95 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeecccc--ccCCCCCC
Confidence 34444 45666666654 55799999999976 46778899999999999999999998 432221110 00011238
Q ss_pred hHHHHHHHHHHhcccC
Q 015649 277 STLMAQHLLAAADRYA 292 (403)
Q Consensus 277 ~~~~~~~ll~~Ad~~~ 292 (403)
..+.+++||.+|++++
T Consensus 96 ppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 96 PPEMALELLMAANYLE 111 (112)
T ss_pred CHHHHHHHHHHhhhhc
Confidence 8999999999999875
No 38
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.17 E-value=0.00052 Score=63.48 Aligned_cols=88 Identities=15% Similarity=0.215 Sum_probs=71.7
Q ss_pred eEEEEehhhhhccCHHHHHhhcCCC-CCCCcceEEec-CCCHHHHHHHHhhhccCCCCCCcccccCCcccchHHHHHHHH
Q 015649 208 ERFAAHKLVLATRSPVFKAQLFGPL-KDQNTQCIKVE-DMEVPVFKALLHFIYWDALPDMEDLVDLSPKWASTLMAQHLL 285 (403)
Q Consensus 208 ~~f~~Hk~iLa~~S~~F~~~f~~~~-~e~~~~~i~l~-d~~~~~f~~~L~~lY~~~~~~~~~~~~~~~~~~~~~~~~~ll 285 (403)
+.|.|.+.+|...=.||+..+.... ......+|+|. ..+..+|+-+++|+.+..-. ++..++..||
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~------------l~~~NvvsIl 81 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPS------------LTPSNVVSIL 81 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCc------------CCcCcEEEeE
Confidence 5799999999999999999995521 12223345555 57899999999999984433 7888999999
Q ss_pred HHhcccChHHHHHHHHHHHHcc
Q 015649 286 AAADRYALERLKLLCEAKLCED 307 (403)
Q Consensus 286 ~~Ad~~~i~~L~~~c~~~l~~~ 307 (403)
.-+++++|+.|.+.|-.|+.++
T Consensus 82 iSS~FL~M~~Lve~cl~y~~~~ 103 (317)
T PF11822_consen 82 ISSEFLQMESLVEECLQYCHDH 103 (317)
T ss_pred ehhhhhccHHHHHHHHHHHHHh
Confidence 9999999999999999998654
No 39
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.89 E-value=0.0064 Score=47.60 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=59.5
Q ss_pred EEEEE-cCeEEEEehhhhhccCHHHHHhhcCCCCC-CCcceEEecCCCHHHHHHHHhhhccCCC-CCCcccccCCcc---
Q 015649 201 VNFEV-DGERFAAHKLVLATRSPVFKAQLFGPLKD-QNTQCIKVEDMEVPVFKALLHFIYWDAL-PDMEDLVDLSPK--- 274 (403)
Q Consensus 201 v~~~v-~~~~f~~Hk~iLa~~S~~F~~~f~~~~~e-~~~~~i~l~d~~~~~f~~~L~~lY~~~~-~~~~~~~~~~~~--- 274 (403)
++|+. +|.+|.+.+.+.. +|..++.|+.+...+ .....|.+++++...++.+++|++...- +........-+.
T Consensus 4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~ 82 (104)
T smart00512 4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA 82 (104)
T ss_pred EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence 44543 7889999999885 999999999653222 2225899999999999999999975432 111000000000
Q ss_pred ---cchHHHHHHHHHHhcccCh
Q 015649 275 ---WASTLMAQHLLAAADRYAL 293 (403)
Q Consensus 275 ---~~~~~~~~~ll~~Ad~~~i 293 (403)
.++.+.+.+|+.+|+++++
T Consensus 83 ~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 83 EFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 0445567777777776653
No 40
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.001 Score=73.11 Aligned_cols=121 Identities=12% Similarity=0.091 Sum_probs=92.1
Q ss_pred eEEEEEEcCccCcccCCCCCeeeccceeecCEEEEEEEeCCCCCCCCCCCeEEEEEEeecC----CceEEEEEEEEEeeC
Q 015649 30 GSHQFKISGYSLSKGMGIGKYIASDTFIVGGYAWAVYFYPDGKSAEDNAAYVSLFIALASE----GTDVRALFELTLLDQ 105 (403)
Q Consensus 30 ~~~~w~I~nfs~~~~~~~g~~~~S~~f~~~g~~W~l~v~p~g~~~~~~~~~lslyL~~~~~----~w~~~a~~~~~ll~~ 105 (403)
...+|...+..+.. ....||.|..|+.+|++.+.|+++. ...++.|+.|... .|.+.+++.+.+.|.
T Consensus 27 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~ 97 (1093)
T KOG1863|consen 27 QSTTIDGIDDKSLL-----YRALSSNFGAGATKWKILIAPKVNS----LQSTRKKLEVMPSQSLKSWSCGAQAVLRVKNT 97 (1093)
T ss_pred ccccccCcCcchhh-----hHhcCccccccccceeeeeccccCc----ccceeEEeeeccCCCCcceEecchhhhccccC
Confidence 33446666554444 3677999999999999999999874 3569999999653 299999999999993
Q ss_pred CCCcccceeeccccccccCCceecccCccccccceeccccc--ccccccCCCcEEEEEEeeeee
Q 015649 106 SGKERHKVHTHFGRTLESGPYALKYRGSMWGYKRFFKRTLL--ETSDYLKDDCLSVSCCVGVVK 167 (403)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~fi~~~~L--~~~~fl~~d~l~i~~~v~i~~ 167 (403)
.+... .. .....+.|.....+||+.+|+.|+++ ...+|+.+|++.+++.|.+..
T Consensus 98 ~~~~~-~~-------~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~ 153 (1093)
T KOG1863|consen 98 IDNLP-DP-------EKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQ 153 (1093)
T ss_pred CCCch-hh-------hhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeec
Confidence 33222 11 11234677778899999999999999 447999999999999998875
No 41
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.015 Score=49.01 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=73.9
Q ss_pred cCeEEEEehhhhhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhccCCCCCCcccc-----cCCcc------
Q 015649 206 DGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVFKALLHFIYWDALPDMEDLV-----DLSPK------ 274 (403)
Q Consensus 206 ~~~~f~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~lY~~~~~~~~~~~-----~~~~~------ 274 (403)
+|+.|.+-..++. +|..+.+++...--......|+|+.++...|..+|+|++...-+...... .....
T Consensus 13 DG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 7888999888776 88998988854321222257999999999999999999884432110000 00000
Q ss_pred --cchHHHHHHHHHHhcccChHHHHHHHHHHHHccCChh
Q 015649 275 --WASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAIN 311 (403)
Q Consensus 275 --~~~~~~~~~ll~~Ad~~~i~~L~~~c~~~l~~~l~~~ 311 (403)
.++..++.+|+.+|++++++.|..+|.+.+...+...
T Consensus 92 Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgk 130 (162)
T KOG1724|consen 92 FLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGK 130 (162)
T ss_pred HHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccC
Confidence 2445588999999999999999999999877655333
No 42
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.63 E-value=0.014 Score=40.94 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=44.7
Q ss_pred EEEEE-cCeEEEEehhhhhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhcc
Q 015649 201 VNFEV-DGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVFKALLHFIYW 259 (403)
Q Consensus 201 v~~~v-~~~~f~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~lY~ 259 (403)
|+|+. +|+.|.+.+.++. .|..++.|+.+...+.. .|.+++++...++.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 34444 7899999999887 99999999976433333 799999999999999999964
No 43
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=96.53 E-value=0.0055 Score=47.58 Aligned_cols=61 Identities=26% Similarity=0.373 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHhcCcccHHHHHcccchhHHHhhChHHHHHHHHHHHhhCCCCCCCCCC
Q 015649 313 VATTLALAEQHHCSQLKAVCLKFIASPENLKAVMQTDGFEYLKESCPSVLTELLQYVAKIGEHSVIASGH 382 (403)
Q Consensus 313 ~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~v~~~~~f~~l~~~~p~l~~ell~~~~~~~~~~~~~~~~ 382 (403)
|+.++.+|..|++..|.+.|.+|+. .|+.++..+++|.+|+ .+.+..++..+.-.+..+..
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~--~nf~~v~~~~~f~~L~-------~~~l~~iL~~~~l~v~~E~~ 61 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIA--KNFNEVSKSDEFLELP-------FDQLIEILSSDDLNVSSEDD 61 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH--HTHHHHTTSHHHHCS--------HHHHHHHHHTSS--ECTCCC
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHH--HHHHHHccchhhhcCC-------HHHHHHHHhccccccccHHH
Confidence 5789999999999999999999999 9999999999998877 34445555555544444433
No 44
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.48 E-value=0.0015 Score=63.70 Aligned_cols=78 Identities=26% Similarity=0.379 Sum_probs=65.2
Q ss_pred eeeeEEEEEEcCccCcccC---CCCCeeeccceee--cCEEEEEEEeCCCCCCCCCCCeEEEEEEeecC------CceEE
Q 015649 27 TINGSHQFKISGYSLSKGM---GIGKYIASDTFIV--GGYAWAVYFYPDGKSAEDNAAYVSLFIALASE------GTDVR 95 (403)
Q Consensus 27 ~~~~~~~w~I~nfs~~~~~---~~g~~~~S~~f~~--~g~~W~l~v~p~g~~~~~~~~~lslyL~~~~~------~w~~~ 95 (403)
...|.++|+|.+|...+.- ..+..++|+.|+. .||..+.++|-||++ .+.+.++|+|+....+ .|+++
T Consensus 277 ~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g-~~~~~~~s~~~~~~~ge~d~~l~wpf~ 355 (391)
T KOG0297|consen 277 SYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDG-TGKGTHLSLYFVVMRGEYDALLPWPFR 355 (391)
T ss_pred ccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCC-CCCcceeeeeeeecccCcccccccCCC
Confidence 5689999999999544331 3467899999975 699999999999988 4577899999998764 39999
Q ss_pred EEEEEEEeeC
Q 015649 96 ALFELTLLDQ 105 (403)
Q Consensus 96 a~~~~~ll~~ 105 (403)
-++++++++|
T Consensus 356 ~~v~~~l~dq 365 (391)
T KOG0297|consen 356 QKVTLMLLDQ 365 (391)
T ss_pred CceEEEEecc
Confidence 9999999999
No 45
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=96.35 E-value=0.011 Score=51.39 Aligned_cols=93 Identities=19% Similarity=0.323 Sum_probs=73.5
Q ss_pred ccEEEEEcCeEEEEehhhhhccCH--HHHHhhcCC--CCCCCcceEEecCCCHHHHHHHHhhhccCCCCCCcccccCCcc
Q 015649 199 TDVNFEVDGERFAAHKLVLATRSP--VFKAQLFGP--LKDQNTQCIKVEDMEVPVFKALLHFIYWDALPDMEDLVDLSPK 274 (403)
Q Consensus 199 sDv~~~v~~~~f~~Hk~iLa~~S~--~F~~~f~~~--~~e~~~~~i~l~d~~~~~f~~~L~~lY~~~~~~~~~~~~~~~~ 274 (403)
+-|.+.++|+.|..-..-|..|-| -...||.+. +.+...+-..+-|-+|..|+-+|.|+..|.++..
T Consensus 9 ~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~--------- 79 (302)
T KOG1665|consen 9 SMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSL--------- 79 (302)
T ss_pred hhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeec---------
Confidence 457788999999988888877754 678888664 3333334455567899999999999999998733
Q ss_pred cchHHHHHHHHHHhcccChHHHHHHHHH
Q 015649 275 WASTLMAQHLLAAADRYALERLKLLCEA 302 (403)
Q Consensus 275 ~~~~~~~~~ll~~Ad~~~i~~L~~~c~~ 302 (403)
+.-.+.++|+.|++|++-.|++..++
T Consensus 80 --s~i~~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 80 --SDIDCLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred --CCccHHHHHHHhhHHhhHhHHhHHhh
Confidence 33468999999999999999998887
No 46
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=96.30 E-value=0.012 Score=56.14 Aligned_cols=92 Identities=26% Similarity=0.342 Sum_probs=69.4
Q ss_pred cEEEEEcCeEEEEehhhhhccC--HHHHHhhcCCCCCCCc-ceEEecCCCHHHHHHHHhhhccCCCCCCcccccCCcccc
Q 015649 200 DVNFEVDGERFAAHKLVLATRS--PVFKAQLFGPLKDQNT-QCIKVEDMEVPVFKALLHFIYWDALPDMEDLVDLSPKWA 276 (403)
Q Consensus 200 Dv~~~v~~~~f~~Hk~iLa~~S--~~F~~~f~~~~~e~~~-~~i~l~d~~~~~f~~~L~~lY~~~~~~~~~~~~~~~~~~ 276 (403)
=|.|.|+|+.|...+.-|+... .+|.+++.+.+.-... .-..+-|=+|+.|..+|+||.|+.++ +
T Consensus 12 ~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~------------~ 79 (465)
T KOG2714|consen 12 RVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLD------------A 79 (465)
T ss_pred eEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCC------------C
Confidence 3778999999999999998776 6999999887643332 22344477999999999999999998 3
Q ss_pred hHHHHHHHHH-HhcccChHHHHH---HHHHH
Q 015649 277 STLMAQHLLA-AADRYALERLKL---LCEAK 303 (403)
Q Consensus 277 ~~~~~~~ll~-~Ad~~~i~~L~~---~c~~~ 303 (403)
.......++. =|.+|++..|.+ +|+..
T Consensus 80 ~g~~~~~llhdEA~fYGl~~llrrl~~~~~~ 110 (465)
T KOG2714|consen 80 SGVFPERLLHDEAMFYGLTPLLRRLTLCEEL 110 (465)
T ss_pred ccCchhhhhhhhhhhcCcHHHHHHhhcCccc
Confidence 3334445555 899999998876 45543
No 47
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.22 E-value=0.0066 Score=56.87 Aligned_cols=89 Identities=21% Similarity=0.308 Sum_probs=66.1
Q ss_pred cccEEEEE-cCeEEEEehhhhhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhccCCCCCCcccccCCcccc
Q 015649 198 FTDVNFEV-DGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVFKALLHFIYWDALPDMEDLVDLSPKWA 276 (403)
Q Consensus 198 ~sDv~~~v-~~~~f~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~lY~~~~~~~~~~~~~~~~~~ 276 (403)
..|++|.. +|+.|-|||.+|++||++|..-+..-+ .+..+|+-..+-+.+|..||+|+|-..-. +
T Consensus 149 ~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~v~~~~f~~flk~lyl~~na------------~ 214 (516)
T KOG0511|consen 149 CHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHRVILSAFSPFLKQLYLNTNA------------E 214 (516)
T ss_pred ccchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhhhhHhhhhHHHHHHHHhhhh------------h
Confidence 46888876 577899999999999998865543221 13356666678899999999999977332 3
Q ss_pred hHHHHHHHHHHhcccChHHHHHHH
Q 015649 277 STLMAQHLLAAADRYALERLKLLC 300 (403)
Q Consensus 277 ~~~~~~~ll~~Ad~~~i~~L~~~c 300 (403)
.......|+.+..+|+.+.|....
T Consensus 215 ~~~qynallsi~~kF~~e~l~~~~ 238 (516)
T KOG0511|consen 215 WKDQYNALLSIEVKFSKEKLSLEI 238 (516)
T ss_pred hhhHHHHHHhhhhhccHHHhHHHH
Confidence 445568899999999988776543
No 48
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=95.17 E-value=0.027 Score=43.26 Aligned_cols=41 Identities=27% Similarity=0.278 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHhcCcccHHHHHcccchhHHH
Q 015649 313 VATTLALAEQHHCSQLKAVCLKFIASPENLKAVMQTDGFEYLK 355 (403)
Q Consensus 313 ~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~v~~~~~f~~l~ 355 (403)
|+.++.+|..|++..|.+.|.+|+. .|+..+.++++|..|+
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~--~nf~~~~~~~~f~~L~ 41 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFIL--KNFLEVAQSEEFLELS 41 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHH--HHHHHHhcCcHHhcCC
Confidence 3567888999999999999999999 9999999988887776
No 49
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=94.35 E-value=0.2 Score=41.79 Aligned_cols=98 Identities=18% Similarity=0.191 Sum_probs=72.6
Q ss_pred cccEEEEEcCeEEEEehhhhhccCHHHH-HhhcCCC---CCCCcceEEecCCCHHHHHHHHhhhccCCCCCCcccccCCc
Q 015649 198 FTDVNFEVDGERFAAHKLVLATRSPVFK-AQLFGPL---KDQNTQCIKVEDMEVPVFKALLHFIYWDALPDMEDLVDLSP 273 (403)
Q Consensus 198 ~sDv~~~v~~~~f~~Hk~iLa~~S~~F~-~~f~~~~---~e~~~~~i~l~d~~~~~f~~~L~~lY~~~~~~~~~~~~~~~ 273 (403)
..=|.|.|||..|-.-|.-|+--+.-|- .+..... ......--.+-|-+|..|.-+|+|+.+|++-
T Consensus 20 s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklv---------- 89 (210)
T KOG2715|consen 20 SLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLV---------- 89 (210)
T ss_pred eEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhh----------
Confidence 3457788999999999999998885554 4444331 1111122334467999999999999999985
Q ss_pred ccchHHHHHHHHHHhcccChHHHHHHHHHHHHcc
Q 015649 274 KWASTLMAQHLLAAADRYALERLKLLCEAKLCED 307 (403)
Q Consensus 274 ~~~~~~~~~~ll~~Ad~~~i~~L~~~c~~~l~~~ 307 (403)
++.-.-..+|.-|++|.++.|.++..+.|.+.
T Consensus 90 --l~~l~eeGvL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 90 --LNKLSEEGVLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred --hhhhhhhccchhhhccCChHHHHHHHHHHHHH
Confidence 44444567899999999999999988888764
No 50
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=94.22 E-value=0.022 Score=53.49 Aligned_cols=145 Identities=23% Similarity=0.236 Sum_probs=113.7
Q ss_pred cEEEEEcCeEEEEehhhhhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhccCCCCCCcccccCCcccchHH
Q 015649 200 DVNFEVDGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVFKALLHFIYWDALPDMEDLVDLSPKWASTL 279 (403)
Q Consensus 200 Dv~~~v~~~~f~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~lY~~~~~~~~~~~~~~~~~~~~~ 279 (403)
|.++......+.+|+.+|...|+.|..+....-..+....+.+.......+..+.+++|.. +... ....
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~----------e~~~ 96 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKH----------EMVF 96 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhh----------HHHH
Confidence 4444556678999999999999999988765533334456777788889999999999987 3211 3345
Q ss_pred HHHHHHHHhcccChHHHHHHHHHHHHc-cCChhhHHHHHHHHHHcCcHHHHHHHHHHhcCcccHHHHHcccchhHHHhh
Q 015649 280 MAQHLLAAADRYALERLKLLCEAKLCE-DVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKAVMQTDGFEYLKES 357 (403)
Q Consensus 280 ~~~~ll~~Ad~~~i~~L~~~c~~~l~~-~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~v~~~~~f~~l~~~ 357 (403)
....++.+...|.++.++..|...+.. .++..++...+..+..+....|...+...+. ..+....+++.+..+...
T Consensus 97 ~~ihll~~~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~--~~~~~H~~t~~~~~~~c~ 173 (319)
T KOG1778|consen 97 FDIHLLALSHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIM--LLFDLHLQTEKWFAYTCP 173 (319)
T ss_pred HHHHHHhhhhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHH--HHHHHHhcccCceeeecC
Confidence 667778888899999999998887766 5578899999999999999999999999999 888888887776655443
No 51
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.47 E-value=0.71 Score=36.75 Aligned_cols=110 Identities=19% Similarity=0.164 Sum_probs=72.6
Q ss_pred cEEEE-EcCeEEEEehhhhhccCHHHHHhhcCCCCCCCcceEEecCCCHHHHHHHHhhhccCCCCCCc---ccccC---C
Q 015649 200 DVNFE-VDGERFAAHKLVLATRSPVFKAQLFGPLKDQNTQCIKVEDMEVPVFKALLHFIYWDALPDME---DLVDL---S 272 (403)
Q Consensus 200 Dv~~~-v~~~~f~~Hk~iLa~~S~~F~~~f~~~~~e~~~~~i~l~d~~~~~f~~~L~~lY~~~~~~~~---~~~~~---~ 272 (403)
-+.++ .+|..|.+.+.+ |-+|-..+.|+... ....-.+.++++...+|..+++|+-..+-.... +.... .
T Consensus 3 ~i~l~s~dge~F~vd~~i-AerSiLikN~l~d~--~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p 79 (158)
T COG5201 3 MIELESIDGEIFRVDENI-AERSILIKNMLCDS--TACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKP 79 (158)
T ss_pred ceEEEecCCcEEEehHHH-HHHHHHHHHHhccc--cccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCC
Confidence 34444 367778887765 55888888887432 122234677899999999999999654422111 11111 1
Q ss_pred cc-------cchHHHHHHHHHHhcccChHHHHHHHHHHHHccCChhh
Q 015649 273 PK-------WASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAINT 312 (403)
Q Consensus 273 ~~-------~~~~~~~~~ll~~Ad~~~i~~L~~~c~~~l~~~l~~~n 312 (403)
++ ..+.+.+.++..+|+++.++.|.+.|+..+...+...+
T Consensus 80 ~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkS 126 (158)
T COG5201 80 SDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKS 126 (158)
T ss_pred ccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCC
Confidence 10 24456788899999999999999999998776554443
No 52
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=89.56 E-value=0.63 Score=34.17 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHhcccChHHHHHHHHHHHHccCChh---hHHHHHHHHHHc
Q 015649 276 ASTLMAQHLLAAADRYALERLKLLCEAKLCEDVAIN---TVATTLALAEQH 323 (403)
Q Consensus 276 ~~~~~~~~ll~~Ad~~~i~~L~~~c~~~l~~~l~~~---n~~~~l~~A~~~ 323 (403)
.+...+.+|+.+|++++++.|...|...+...+... -+..++.+...+
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~ 61 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDL 61 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TS
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCC
Confidence 456789999999999999999999999887655444 344444444433
No 53
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=85.93 E-value=1.5 Score=42.91 Aligned_cols=61 Identities=31% Similarity=0.408 Sum_probs=48.4
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHhcCcccHHHHHcccchhHHHh-----hChHHHHHHHHHHHhhC
Q 015649 308 VAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKAVMQTDGFEYLKE-----SCPSVLTELLQYVAKIG 373 (403)
Q Consensus 308 l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~v~~~~~f~~l~~-----~~p~l~~ell~~~~~~~ 373 (403)
+..+|++.++..|++|....|.+.|++|+. ..++....|..|.+ +.|+|+..+++.+...-
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr-----~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~ 250 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLR-----KNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSF 250 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHH-----HhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHH
Confidence 478899999999999999999999999999 45566667777766 46777777776655443
No 54
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=73.45 E-value=10 Score=33.71 Aligned_cols=94 Identities=16% Similarity=0.188 Sum_probs=58.2
Q ss_pred cccE-EEEEcCeEEEEehh-hhhccCHHHHHhhcCCCC--CCCcceEEecCCCHHHHHHHHhhhccCCCCCCcccccCCc
Q 015649 198 FTDV-NFEVDGERFAAHKL-VLATRSPVFKAQLFGPLK--DQNTQCIKVEDMEVPVFKALLHFIYWDALPDMEDLVDLSP 273 (403)
Q Consensus 198 ~sDv-~~~v~~~~f~~Hk~-iLa~~S~~F~~~f~~~~~--e~~~~~i~l~d~~~~~f~~~L~~lY~~~~~~~~~~~~~~~ 273 (403)
+.|+ .+-|||.-|..-.. +++-.-....+||.+... ...+..+.| |=+-..|+.+|.||-+......
T Consensus 7 ~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lp-------- 77 (221)
T KOG2723|consen 7 YPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLP-------- 77 (221)
T ss_pred cCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccc--------
Confidence 4454 45566665554444 333344566777765321 122233444 4577899999999999433211
Q ss_pred ccchHHHHHHHHHHhcccChHHHHHHHHH
Q 015649 274 KWASTLMAQHLLAAADRYALERLKLLCEA 302 (403)
Q Consensus 274 ~~~~~~~~~~ll~~Ad~~~i~~L~~~c~~ 302 (403)
....++..|+..|++|+++.+..++.+
T Consensus 78 --e~f~e~~~L~rEA~f~~l~~~~~~l~~ 104 (221)
T KOG2723|consen 78 --EDFAEVERLVREAEFFQLEAPVTYLLN 104 (221)
T ss_pred --hhhhhHHHHHHHHHHHccccHHHHHhc
Confidence 334578899999999999977765554
No 55
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=65.75 E-value=11 Score=35.02 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=59.1
Q ss_pred CCcccEEEEEcCeEEEEehhhhhccCH-HHHHhhcCCC---CCCCcceEEec-CCCHHHHHHHHhhhccCCCCCCccccc
Q 015649 196 GRFTDVNFEVDGERFAAHKLVLATRSP-VFKAQLFGPL---KDQNTQCIKVE-DMEVPVFKALLHFIYWDALPDMEDLVD 270 (403)
Q Consensus 196 ~~~sDv~~~v~~~~f~~Hk~iLa~~S~-~F~~~f~~~~---~e~~~~~i~l~-d~~~~~f~~~L~~lY~~~~~~~~~~~~ 270 (403)
+..--++..+++..|-+.+.+|.++-. -.-.||.+++ ......++++- +++..+|+++|+|--+|.+.-.+
T Consensus 93 g~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~---- 168 (438)
T KOG3840|consen 93 GEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPS---- 168 (438)
T ss_pred CCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCC----
Confidence 344568889999999999999986522 3345665543 22334566665 59999999999999988764221
Q ss_pred CCcccchHHHHHHHHHHhcccCh
Q 015649 271 LSPKWASTLMAQHLLAAADRYAL 293 (403)
Q Consensus 271 ~~~~~~~~~~~~~ll~~Ad~~~i 293 (403)
.-.+.+|-+++|++.+
T Consensus 169 -------~vSvpELrEACDYLli 184 (438)
T KOG3840|consen 169 -------SVSVSELREACDYLLV 184 (438)
T ss_pred -------CCchHHHHhhcceEEe
Confidence 2235667777777654
No 56
>PHA03098 kelch-like protein; Provisional
Probab=55.93 E-value=22 Score=36.28 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=29.0
Q ss_pred cCChhhHHHHHHHHHHcCcHHHHHHHHHHhc
Q 015649 307 DVAINTVATTLALAEQHHCSQLKAVCLKFIA 337 (403)
Q Consensus 307 ~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 337 (403)
.++.+|+.+++..|+.++++.|+..|.+|+.
T Consensus 72 ~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~ 102 (534)
T PHA03098 72 NITSNNVKDILSIANYLIIDFLINLCINYII 102 (534)
T ss_pred EEcHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3588899999999999999999999999998
No 57
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=55.32 E-value=5.4 Score=37.45 Aligned_cols=41 Identities=15% Similarity=0.333 Sum_probs=37.3
Q ss_pred cCChhhHHHHHHHHHHcCcHHHHHHHHHHhcCcccHHHHHccc
Q 015649 307 DVAINTVATTLALAEQHHCSQLKAVCLKFIASPENLKAVMQTD 349 (403)
Q Consensus 307 ~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~v~~~~ 349 (403)
.+++.|++.++.-++-...+.|.+.|+.|+. .|+.+++.++
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~--~~~~~Iv~~~ 111 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCH--DHMSEIVASP 111 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHH--HhHHHHHcCC
Confidence 4789999999999999999999999999999 9998888654
No 58
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=52.70 E-value=14 Score=28.29 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=26.7
Q ss_pred ChhhHHHHHHHHHHcCcHHHHHHHHHHhc
Q 015649 309 AINTVATTLALAEQHHCSQLKAVCLKFIA 337 (403)
Q Consensus 309 ~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 337 (403)
+.+++..++.+|..++++.|...|..++.
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~ 108 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQ 108 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 37889999999999999999999999987
No 59
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=51.25 E-value=31 Score=26.03 Aligned_cols=56 Identities=14% Similarity=0.307 Sum_probs=35.2
Q ss_pred HHHHHHhcccChHHHHHHHHHHHHccC------------ChhhHHHHHHHHHH--cCcHHHHHHHHHHhc
Q 015649 282 QHLLAAADRYALERLKLLCEAKLCEDV------------AINTVATTLALAEQ--HHCSQLKAVCLKFIA 337 (403)
Q Consensus 282 ~~ll~~Ad~~~i~~L~~~c~~~l~~~l------------~~~n~~~~l~~A~~--~~~~~L~~~~~~~i~ 337 (403)
.+++.+|+.|++..|...|.+++..+. +.+....++.--.. .+-..+.+.+++++.
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~ 71 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLK 71 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHH
Confidence 478999999999999999999998752 22223333332111 122356777777777
No 60
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=41.03 E-value=26 Score=27.86 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=35.2
Q ss_pred cCeEEEEehhhhhccCHHHHHh-hcCCCCCCCcceEEec-CC--CHHHHHHHHhhhccCCC
Q 015649 206 DGERFAAHKLVLATRSPVFKAQ-LFGPLKDQNTQCIKVE-DM--EVPVFKALLHFIYWDAL 262 (403)
Q Consensus 206 ~~~~f~~Hk~iLa~~S~~F~~~-f~~~~~e~~~~~i~l~-d~--~~~~f~~~L~~lY~~~~ 262 (403)
++..+.||-.+++++||...+- |.=+. .-..+..+ |+ -.+.....|.++|.+.-
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k~~f~IpY---~~~~ii~PFDFNglEe~I~~~l~~mY~~s~ 77 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIKKKFIIPY---THEGIIPPFDFNGLEEGIKNTLKIMYKDSK 77 (117)
T ss_pred CCCEEEEEEEEEECCChHHheEEEEEec---cCCCeECCcccCcHHHHHHHHHHHHhCCCC
Confidence 5779999999999999987542 11111 11112222 32 36778899999999864
No 61
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=39.18 E-value=26 Score=33.93 Aligned_cols=32 Identities=31% Similarity=0.299 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHhcccChHHHHHHHHHHHHcc
Q 015649 276 ASTLMAQHLLAAADRYALERLKLLCEAKLCED 307 (403)
Q Consensus 276 ~~~~~~~~ll~~Ad~~~i~~L~~~c~~~l~~~ 307 (403)
++..++...|.+|.+|+++.++..|.++|..+
T Consensus 170 lspkta~~yYea~ckYgle~vk~kc~ewl~~n 201 (488)
T KOG4682|consen 170 LSPKTACGYYEAACKYGLESVKKKCLEWLLNN 201 (488)
T ss_pred cChhhhhHhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 67789999999999999999999999998764
No 62
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=35.51 E-value=1.6e+02 Score=22.66 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=38.3
Q ss_pred EEEEEcC--eEEEEehhhhhccCHHHHHhhcCC---CCCCCcceEEecCCCHHHHHHHHhhh
Q 015649 201 VNFEVDG--ERFAAHKLVLATRSPVFKAQLFGP---LKDQNTQCIKVEDMEVPVFKALLHFI 257 (403)
Q Consensus 201 v~~~v~~--~~f~~Hk~iLa~~S~~F~~~f~~~---~~e~~~~~i~l~d~~~~~f~~~L~~l 257 (403)
+.+.||+ +.|-++...|. .|.|+.++... +.-...+.|.|+ ++...|+.+|..|
T Consensus 41 ~~VyVG~~~~Rfvvp~~~L~--hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 41 FAVYVGEERRRFVVPVSYLN--HPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred EEEEeCccceEEEechHHcC--chhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 5566664 57888888885 68999999532 222235567776 8899999888765
No 63
>PHA02790 Kelch-like protein; Provisional
Probab=33.92 E-value=58 Score=32.89 Aligned_cols=32 Identities=9% Similarity=0.018 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHhcccChHHHHHHHHHHHHcc
Q 015649 276 ASTLMAQHLLAAADRYALERLKLLCEAKLCED 307 (403)
Q Consensus 276 ~~~~~~~~ll~~Ad~~~i~~L~~~c~~~l~~~ 307 (403)
++.+|..+++.+|+.|+++.|...+.+++.++
T Consensus 120 l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~n 151 (480)
T PHA02790 120 FRKEYCVECYMMGIEYGLSNLLCHTKDFIAKH 151 (480)
T ss_pred CCcchHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence 66789999999999999999999999998775
No 64
>PHA02713 hypothetical protein; Provisional
Probab=29.57 E-value=1.6e+02 Score=30.38 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=28.9
Q ss_pred CChhhHHHHHHHHHHcCcHHHHHHHHHHhc
Q 015649 308 VAINTVATTLALAEQHHCSQLKAVCLKFIA 337 (403)
Q Consensus 308 l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 337 (403)
++.+|+..++..|..+.++.|++.|.+|+.
T Consensus 91 i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~ 120 (557)
T PHA02713 91 ISSMNVIDVLKCADYLLIDDLVTDCESYIK 120 (557)
T ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 688999999999999999999999999998
No 65
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=27.86 E-value=61 Score=24.02 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=21.7
Q ss_pred HHHHHhcccChHHHHHHHHHHHHcc
Q 015649 283 HLLAAADRYALERLKLLCEAKLCED 307 (403)
Q Consensus 283 ~ll~~Ad~~~i~~L~~~c~~~l~~~ 307 (403)
+++.+|+.|+.+.|...|..++.++
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~n 27 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILKN 27 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHHH
Confidence 5778899999999999999998764
No 66
>PF12197 lci: Bacillus cereus group antimicrobial protein; InterPro: IPR020976 This entry represents antimicrobial peptides from bacteria of approximately 40 amino acids in length.; PDB: 2B9K_A.
Probab=22.32 E-value=2.3e+02 Score=18.33 Aligned_cols=31 Identities=13% Similarity=0.340 Sum_probs=17.5
Q ss_pred eeeccceeecCEEEEEEEe-CCCCCCCCCCCeEEEE
Q 015649 50 YIASDTFIVGGYAWAVYFY-PDGKSAEDNAAYVSLF 84 (403)
Q Consensus 50 ~~~S~~f~~~g~~W~l~v~-p~g~~~~~~~~~lsly 84 (403)
-+....|...|++|.++=. .+ ...+.++..|
T Consensus 10 GvFAN~F~~~GitWYfKg~~~~----~~~g~~vg~Y 41 (45)
T PF12197_consen 10 GVFANSFSDDGITWYFKGKHTK----NSDGTWVGYY 41 (45)
T ss_dssp -----EEEETTEEEEEEEEEE-----TTTSSEEEEE
T ss_pred CceEEEEEcCCcEEEEeeeEEe----cCCccEEEEE
Confidence 3557778889999999854 22 1234666666
Done!