Query 015650
Match_columns 403
No_of_seqs 658 out of 3968
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 08:17:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.9E-45 4.1E-50 303.6 24.6 274 79-402 109-473 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 3.1E-43 6.8E-48 293.9 21.1 274 81-403 171-453 (459)
3 KOG2111 Uncharacterized conser 100.0 3.5E-39 7.6E-44 260.9 33.6 305 87-403 7-315 (346)
4 KOG0286 G-protein beta subunit 100.0 5.9E-39 1.3E-43 256.4 32.0 279 78-402 48-337 (343)
5 KOG0279 G protein beta subunit 100.0 2.3E-38 4.9E-43 251.5 30.2 289 75-402 5-305 (315)
6 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-39 4.2E-44 271.3 17.7 245 73-331 205-458 (459)
7 KOG0315 G-protein beta subunit 100.0 4.9E-37 1.1E-41 240.1 25.4 260 71-342 26-297 (311)
8 KOG0271 Notchless-like WD40 re 100.0 1.8E-37 4E-42 256.5 21.2 248 71-331 143-479 (480)
9 KOG0295 WD40 repeat-containing 100.0 8.2E-36 1.8E-40 245.2 23.2 277 77-402 100-398 (406)
10 KOG0265 U5 snRNP-specific prot 100.0 2.3E-35 4.9E-40 236.8 25.1 279 78-403 40-331 (338)
11 KOG0273 Beta-transducin family 100.0 5.6E-35 1.2E-39 247.8 28.8 268 85-403 235-516 (524)
12 KOG0315 G-protein beta subunit 100.0 1.3E-34 2.9E-39 226.5 27.5 255 98-403 11-281 (311)
13 KOG0279 G protein beta subunit 100.0 9.3E-35 2E-39 231.1 26.2 244 78-334 56-314 (315)
14 KOG0263 Transcription initiati 100.0 2.4E-35 5.2E-40 265.1 25.6 246 81-338 374-654 (707)
15 KOG0273 Beta-transducin family 100.0 2.8E-35 6.1E-40 249.6 24.3 274 82-403 175-475 (524)
16 KOG0291 WD40-repeat-containing 100.0 6.9E-34 1.5E-38 254.0 30.7 292 81-401 303-603 (893)
17 cd00200 WD40 WD40 domain, foun 100.0 9.5E-33 2.1E-37 241.3 34.2 276 79-403 3-284 (289)
18 KOG0284 Polyadenylation factor 100.0 1.7E-35 3.6E-40 246.7 15.6 270 85-403 96-373 (464)
19 KOG0316 Conserved WD40 repeat- 100.0 1.5E-33 3.4E-38 218.9 24.3 274 77-400 9-290 (307)
20 KOG0286 G-protein beta subunit 100.0 9E-33 1.9E-37 221.2 27.9 240 79-331 91-343 (343)
21 KOG0291 WD40-repeat-containing 100.0 1.7E-32 3.6E-37 245.2 32.5 318 75-403 135-501 (893)
22 KOG0266 WD40 repeat-containing 100.0 3.4E-33 7.4E-38 257.0 29.2 274 82-400 156-442 (456)
23 KOG0285 Pleiotropic regulator 100.0 3.7E-33 8E-38 229.2 25.8 284 77-403 143-432 (460)
24 KOG0643 Translation initiation 100.0 4.5E-33 9.7E-38 220.2 25.1 289 79-403 4-310 (327)
25 KOG0645 WD40 repeat protein [G 100.0 3.6E-32 7.8E-37 215.5 28.9 283 76-403 5-304 (312)
26 KOG2110 Uncharacterized conser 100.0 2.8E-31 6E-36 219.3 33.2 312 84-403 4-323 (391)
27 KOG1407 WD40 repeat protein [F 100.0 1.5E-32 3.3E-37 216.5 24.1 275 79-402 14-294 (313)
28 KOG0293 WD40 repeat-containing 100.0 2.8E-33 6E-38 233.9 20.9 281 77-403 216-506 (519)
29 KOG0318 WD40 repeat stress pro 100.0 1.2E-31 2.6E-36 230.7 31.3 284 76-402 181-552 (603)
30 KOG0282 mRNA splicing factor [ 100.0 5.1E-34 1.1E-38 242.8 15.5 279 79-403 208-498 (503)
31 KOG0296 Angio-associated migra 100.0 5.2E-32 1.1E-36 223.0 26.5 276 77-403 56-391 (399)
32 KOG0276 Vesicle coat complex C 100.0 1.1E-32 2.3E-37 241.6 23.0 250 79-341 7-265 (794)
33 KOG0263 Transcription initiati 100.0 8.9E-33 1.9E-37 248.7 21.2 231 127-403 376-642 (707)
34 PLN00181 protein SPA1-RELATED; 100.0 6.2E-31 1.4E-35 259.6 35.1 285 81-403 479-786 (793)
35 KOG0295 WD40 repeat-containing 100.0 4.5E-32 9.7E-37 223.3 20.6 245 78-332 143-405 (406)
36 KOG0319 WD40-repeat-containing 100.0 1.7E-31 3.6E-36 238.4 23.3 282 72-403 310-612 (775)
37 KOG0281 Beta-TrCP (transducin 100.0 6.5E-33 1.4E-37 227.0 12.6 231 83-337 195-432 (499)
38 KOG0284 Polyadenylation factor 100.0 9.8E-33 2.1E-37 230.3 13.5 245 79-336 132-383 (464)
39 KOG0296 Angio-associated migra 100.0 1.5E-30 3.3E-35 214.4 24.4 245 77-333 98-398 (399)
40 KOG0278 Serine/threonine kinas 100.0 6E-32 1.3E-36 211.9 14.9 275 79-403 8-290 (334)
41 KOG0318 WD40 repeat stress pro 100.0 1.1E-29 2.4E-34 218.6 29.9 298 90-403 23-343 (603)
42 KOG0292 Vesicle coat complex C 100.0 7.4E-31 1.6E-35 238.5 23.7 272 81-401 5-313 (1202)
43 KOG1446 Histone H3 (Lys4) meth 100.0 2.2E-28 4.8E-33 198.5 32.5 273 79-400 8-295 (311)
44 KOG0265 U5 snRNP-specific prot 100.0 4.7E-30 1E-34 206.4 21.8 236 126-402 44-288 (338)
45 KOG0310 Conserved WD40 repeat- 100.0 2.2E-29 4.9E-34 215.0 25.8 271 84-403 25-302 (487)
46 KOG0306 WD40-repeat-containing 100.0 1.8E-29 3.8E-34 225.9 24.6 273 79-403 367-657 (888)
47 KOG0266 WD40 repeat-containing 100.0 3.3E-29 7E-34 230.7 26.3 243 79-333 197-454 (456)
48 KOG0283 WD40 repeat-containing 100.0 6.9E-29 1.5E-33 225.5 24.9 246 79-336 261-579 (712)
49 KOG0276 Vesicle coat complex C 100.0 8E-29 1.7E-33 217.5 23.5 257 70-339 40-304 (794)
50 KOG0288 WD40 repeat protein Ti 100.0 9E-30 2E-34 213.0 16.5 276 79-402 169-453 (459)
51 KOG0772 Uncharacterized conser 100.0 1.5E-28 3.3E-33 211.1 24.3 278 79-403 161-480 (641)
52 KOG0292 Vesicle coat complex C 100.0 5.4E-28 1.2E-32 220.0 28.6 252 71-337 37-325 (1202)
53 cd00200 WD40 WD40 domain, foun 100.0 1.1E-27 2.4E-32 209.2 29.8 239 79-331 45-289 (289)
54 KOG2096 WD40 repeat protein [G 100.0 5.7E-28 1.2E-32 196.0 24.5 285 72-401 73-394 (420)
55 KOG0645 WD40 repeat protein [G 100.0 6.7E-28 1.5E-32 191.4 24.3 238 80-333 56-311 (312)
56 KOG0275 Conserved WD40 repeat- 100.0 4.7E-29 1E-33 202.8 18.2 280 79-403 207-502 (508)
57 KOG0285 Pleiotropic regulator 100.0 1.3E-28 2.8E-33 202.6 19.5 205 122-339 145-354 (460)
58 KOG0319 WD40-repeat-containing 100.0 1.8E-28 3.9E-33 219.2 20.5 246 79-336 359-622 (775)
59 KOG0281 Beta-TrCP (transducin 100.0 1.7E-29 3.7E-34 207.1 12.7 236 76-337 228-481 (499)
60 KOG0277 Peroxisomal targeting 100.0 3.9E-28 8.4E-33 191.0 19.5 269 88-402 11-301 (311)
61 KOG0305 Anaphase promoting com 100.0 9.2E-28 2E-32 212.7 23.8 243 82-336 214-464 (484)
62 KOG0293 WD40 repeat-containing 100.0 2.2E-28 4.8E-33 204.7 17.2 243 78-335 262-515 (519)
63 KOG0313 Microtubule binding pr 100.0 4E-27 8.6E-32 195.3 23.8 279 71-402 91-410 (423)
64 KOG0282 mRNA splicing factor [ 100.0 1.2E-28 2.6E-33 210.2 14.8 238 79-331 252-503 (503)
65 KOG0299 U3 snoRNP-associated p 100.0 9.7E-27 2.1E-31 197.5 25.7 281 78-400 135-445 (479)
66 KOG0305 Anaphase promoting com 100.0 7.6E-27 1.6E-31 206.9 25.5 263 90-403 182-454 (484)
67 KOG0647 mRNA export protein (c 100.0 1.9E-26 4.1E-31 185.9 25.2 274 77-398 19-311 (347)
68 KOG0973 Histone transcription 100.0 8E-27 1.7E-31 217.5 26.3 276 82-403 10-348 (942)
69 KOG0316 Conserved WD40 repeat- 100.0 3.7E-27 8E-32 183.5 20.1 203 123-341 12-221 (307)
70 KOG0639 Transducin-like enhanc 100.0 5.6E-27 1.2E-31 201.0 23.2 273 81-402 415-696 (705)
71 PLN00181 protein SPA1-RELATED; 100.0 4E-26 8.8E-31 225.6 33.0 236 84-332 531-792 (793)
72 KOG0289 mRNA splicing factor [ 100.0 2.1E-26 4.5E-31 194.1 25.8 271 85-402 219-498 (506)
73 KOG0268 Sof1-like rRNA process 100.0 3.4E-28 7.4E-33 200.4 14.5 275 79-403 60-338 (433)
74 KOG0278 Serine/threonine kinas 100.0 5.8E-28 1.3E-32 189.6 14.2 245 77-337 51-301 (334)
75 KOG0294 WD40 repeat-containing 100.0 2.8E-26 6.1E-31 185.9 23.3 243 77-338 35-286 (362)
76 KOG1036 Mitotic spindle checkp 100.0 8E-26 1.7E-30 182.9 25.7 267 82-400 10-294 (323)
77 KOG0277 Peroxisomal targeting 100.0 3.6E-27 7.8E-32 185.6 17.0 237 84-332 59-308 (311)
78 PTZ00421 coronin; Provisional 100.0 2.8E-25 6.1E-30 203.9 31.9 243 85-338 20-295 (493)
79 KOG0274 Cdc4 and related F-box 100.0 2.1E-26 4.5E-31 211.6 24.4 239 84-342 207-450 (537)
80 KOG0641 WD40 repeat protein [G 100.0 2.1E-24 4.6E-29 167.3 31.6 277 83-403 30-342 (350)
81 PTZ00421 coronin; Provisional 100.0 1.9E-25 4.2E-30 205.0 29.0 227 79-314 69-314 (493)
82 KOG0310 Conserved WD40 repeat- 100.0 4.4E-26 9.5E-31 195.0 22.9 241 79-336 62-312 (487)
83 KOG0288 WD40 repeat protein Ti 99.9 1.2E-26 2.7E-31 194.3 18.5 238 78-330 212-458 (459)
84 KOG0640 mRNA cleavage stimulat 99.9 2.5E-26 5.3E-31 185.9 19.5 281 78-402 105-418 (430)
85 KOG0274 Cdc4 and related F-box 99.9 7.2E-26 1.6E-30 208.1 25.3 240 81-341 245-490 (537)
86 KOG0283 WD40 repeat-containing 99.9 3.5E-26 7.5E-31 208.1 22.5 235 124-402 262-568 (712)
87 KOG0313 Microtubule binding pr 99.9 5.3E-26 1.1E-30 188.6 21.3 243 77-333 136-418 (423)
88 KOG0973 Histone transcription 99.9 4.8E-26 1E-30 212.4 23.5 251 78-338 62-360 (942)
89 KOG0306 WD40-repeat-containing 99.9 4.5E-26 9.7E-31 204.3 21.0 237 84-334 411-665 (888)
90 PTZ00420 coronin; Provisional 99.9 4.4E-24 9.5E-29 197.0 32.2 217 107-336 55-296 (568)
91 KOG0308 Conserved WD40 repeat- 99.9 5.1E-26 1.1E-30 200.8 17.8 242 84-337 20-289 (735)
92 KOG0643 Translation initiation 99.9 1.9E-24 4.2E-29 171.5 24.7 230 127-400 8-251 (327)
93 KOG0264 Nucleosome remodeling 99.9 3.7E-25 8E-30 187.9 21.5 249 77-334 116-405 (422)
94 KOG2055 WD40 repeat protein [G 99.9 6.5E-25 1.4E-29 186.6 21.6 278 81-403 209-505 (514)
95 KOG0275 Conserved WD40 repeat- 99.9 4.3E-26 9.3E-31 185.7 13.8 241 79-331 257-507 (508)
96 KOG1446 Histone H3 (Lys4) meth 99.9 9E-24 1.9E-28 171.9 27.1 239 122-403 8-255 (311)
97 PTZ00420 coronin; Provisional 99.9 9.4E-24 2E-28 194.8 30.2 176 156-336 54-251 (568)
98 KOG1407 WD40 repeat protein [F 99.9 4.5E-24 9.8E-29 168.8 23.2 243 75-333 54-311 (313)
99 KOG0289 mRNA splicing factor [ 99.9 1.4E-24 3.1E-29 183.1 21.6 226 130-401 220-453 (506)
100 KOG0772 Uncharacterized conser 99.9 4.6E-25 9.9E-30 189.9 18.0 206 122-337 161-398 (641)
101 KOG0269 WD40 repeat-containing 99.9 7.4E-25 1.6E-29 197.2 19.0 274 85-403 39-333 (839)
102 KOG0300 WD40 repeat-containing 99.9 2.2E-24 4.8E-29 175.2 19.7 276 79-401 142-467 (481)
103 KOG0301 Phospholipase A2-activ 99.9 4.9E-24 1.1E-28 189.8 23.3 267 79-402 8-280 (745)
104 KOG1332 Vesicle coat complex C 99.9 1.5E-24 3.3E-29 169.9 16.9 249 78-335 4-288 (299)
105 KOG1274 WD40 repeat protein [G 99.9 3.7E-23 8E-28 189.8 28.4 242 82-336 10-265 (933)
106 KOG0268 Sof1-like rRNA process 99.9 5.9E-25 1.3E-29 181.4 14.8 244 76-338 100-350 (433)
107 KOG1408 WD40 repeat protein [F 99.9 1E-23 2.3E-28 188.3 23.3 283 78-403 362-706 (1080)
108 KOG0267 Microtubule severing p 99.9 1.1E-25 2.4E-30 201.0 9.7 240 107-401 15-259 (825)
109 KOG4283 Transcription-coupled 99.9 3.5E-23 7.7E-28 166.6 23.0 282 77-403 35-358 (397)
110 KOG0308 Conserved WD40 repeat- 99.9 1.7E-24 3.7E-29 191.3 16.6 219 139-402 35-277 (735)
111 KOG0640 mRNA cleavage stimulat 99.9 3.6E-24 7.9E-29 173.4 16.3 208 127-344 110-346 (430)
112 KOG1332 Vesicle coat complex C 99.9 3.2E-24 7E-29 168.1 15.1 235 127-402 9-278 (299)
113 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.2E-22 2E-26 173.7 32.7 256 98-402 2-271 (300)
114 KOG0641 WD40 repeat protein [G 99.9 5.1E-22 1.1E-26 154.2 26.1 245 79-333 83-349 (350)
115 KOG2106 Uncharacterized conser 99.9 6.2E-22 1.4E-26 170.4 28.5 268 80-403 149-470 (626)
116 KOG0639 Transducin-like enhanc 99.9 9.3E-24 2E-28 181.4 17.1 237 83-333 463-704 (705)
117 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2E-21 4.3E-26 171.5 32.8 235 87-337 32-283 (300)
118 KOG0294 WD40 repeat-containing 99.9 3.1E-22 6.8E-27 162.6 24.3 226 127-403 41-274 (362)
119 KOG1539 WD repeat protein [Gen 99.9 2.3E-22 5E-27 182.7 25.3 185 176-402 449-639 (910)
120 KOG0299 U3 snoRNP-associated p 99.9 9.9E-23 2.1E-27 173.3 21.6 235 82-333 199-456 (479)
121 KOG0650 WD40 repeat nucleolar 99.9 1.4E-22 3E-27 177.8 21.8 291 76-403 391-728 (733)
122 KOG2919 Guanine nucleotide-bin 99.9 3.2E-22 7E-27 163.1 21.8 241 87-337 51-331 (406)
123 KOG0646 WD40 repeat protein [G 99.9 5.1E-22 1.1E-26 169.4 23.3 265 105-403 16-300 (476)
124 KOG2048 WD40 repeat protein [G 99.9 3.5E-21 7.6E-26 171.4 29.2 277 79-403 19-312 (691)
125 KOG0264 Nucleosome remodeling 99.9 3.4E-22 7.4E-27 170.0 21.8 244 127-402 122-396 (422)
126 KOG0646 WD40 repeat protein [G 99.9 1.2E-22 2.5E-27 173.2 18.9 235 98-342 51-316 (476)
127 KOG0301 Phospholipase A2-activ 99.9 4.1E-22 8.9E-27 177.6 22.5 234 79-336 51-291 (745)
128 KOG1273 WD40 repeat protein [G 99.9 4.2E-22 9.1E-27 161.9 20.5 238 88-338 26-327 (405)
129 KOG0647 mRNA export protein (c 99.9 1E-21 2.2E-26 158.8 22.2 237 127-403 25-274 (347)
130 KOG2445 Nuclear pore complex c 99.9 1.3E-21 2.9E-26 158.5 22.1 247 79-336 7-321 (361)
131 KOG1063 RNA polymerase II elon 99.9 1.1E-21 2.4E-26 174.9 22.6 284 79-403 261-641 (764)
132 KOG2055 WD40 repeat protein [G 99.9 5.5E-22 1.2E-26 168.9 19.2 240 84-333 256-512 (514)
133 KOG2106 Uncharacterized conser 99.9 3.6E-20 7.7E-25 159.7 30.4 262 86-401 247-512 (626)
134 KOG1036 Mitotic spindle checkp 99.9 3.8E-21 8.2E-26 156.0 21.9 236 127-402 11-254 (323)
135 KOG1539 WD repeat protein [Gen 99.9 3.1E-20 6.7E-25 169.0 30.0 317 78-403 195-599 (910)
136 KOG4378 Nuclear protein COP1 [ 99.9 2.1E-21 4.6E-26 166.8 20.6 257 87-392 36-305 (673)
137 KOG0267 Microtubule severing p 99.9 2.8E-23 6.1E-28 185.8 9.6 232 80-325 23-260 (825)
138 KOG1408 WD40 repeat protein [F 99.9 1.1E-21 2.3E-26 175.7 18.6 238 83-334 457-714 (1080)
139 KOG0302 Ribosome Assembly prot 99.9 5.8E-21 1.2E-25 158.8 20.5 188 140-337 164-382 (440)
140 KOG0300 WD40 repeat-containing 99.9 5.7E-21 1.2E-25 155.6 18.3 245 79-336 184-479 (481)
141 KOG2048 WD40 repeat protein [G 99.9 2.8E-20 6E-25 165.7 24.1 231 128-403 24-268 (691)
142 KOG0270 WD40 repeat-containing 99.9 6.5E-21 1.4E-25 161.7 19.1 241 89-338 177-454 (463)
143 KOG1034 Transcriptional repres 99.9 1.7E-20 3.7E-25 153.4 20.1 281 79-403 32-376 (385)
144 KOG2096 WD40 repeat protein [G 99.9 2E-20 4.4E-25 152.4 20.3 204 123-334 81-309 (420)
145 KOG1274 WD40 repeat protein [G 99.9 2.7E-20 5.8E-25 171.2 23.0 234 127-402 11-254 (933)
146 KOG4328 WD40 protein [Function 99.9 3.6E-20 7.7E-25 157.8 21.1 248 79-336 180-453 (498)
147 KOG1063 RNA polymerase II elon 99.9 2.3E-19 5.1E-24 160.2 26.8 290 71-403 40-384 (764)
148 KOG0302 Ribosome Assembly prot 99.9 8.1E-20 1.8E-24 152.0 20.5 242 79-331 145-436 (440)
149 KOG1538 Uncharacterized conser 99.9 1.6E-19 3.5E-24 160.7 22.6 263 87-403 14-286 (1081)
150 KOG1007 WD repeat protein TSSC 99.9 9.6E-20 2.1E-24 146.6 19.2 293 98-403 27-354 (370)
151 KOG4283 Transcription-coupled 99.9 7.7E-20 1.7E-24 147.5 18.1 206 127-340 41-283 (397)
152 KOG0307 Vesicle coat complex C 99.9 8.2E-21 1.8E-25 178.6 14.2 245 84-337 63-331 (1049)
153 KOG0321 WD40 repeat-containing 99.8 1.4E-19 3E-24 160.3 20.3 238 91-337 55-351 (720)
154 KOG1445 Tumor-specific antigen 99.8 4.9E-20 1.1E-24 163.1 16.6 128 77-212 71-211 (1012)
155 KOG0650 WD40 repeat nucleolar 99.8 8.6E-20 1.9E-24 160.4 17.3 235 126-403 397-673 (733)
156 KOG2445 Nuclear pore complex c 99.8 4.1E-18 8.8E-23 138.4 25.1 256 123-403 7-311 (361)
157 KOG0269 WD40 repeat-containing 99.8 7.4E-20 1.6E-24 165.3 14.9 237 88-336 90-343 (839)
158 KOG1273 WD40 repeat protein [G 99.8 9.5E-19 2.1E-23 142.5 19.4 193 132-334 26-227 (405)
159 PRK11028 6-phosphogluconolacto 99.8 5.8E-17 1.3E-21 144.7 31.3 255 103-400 9-293 (330)
160 KOG0322 G-protein beta subunit 99.8 4.3E-19 9.2E-24 141.1 15.4 276 79-403 8-316 (323)
161 KOG0321 WD40 repeat-containing 99.8 9.5E-19 2.1E-23 155.0 19.2 248 79-337 94-395 (720)
162 KOG1007 WD repeat protein TSSC 99.8 1.1E-18 2.4E-23 140.5 17.8 249 75-334 53-362 (370)
163 KOG4378 Nuclear protein COP1 [ 99.8 6E-19 1.3E-23 151.9 15.8 214 89-315 83-305 (673)
164 KOG4328 WD40 protein [Function 99.8 1.9E-18 4E-23 147.5 17.4 198 127-333 184-399 (498)
165 KOG1009 Chromatin assembly com 99.8 8E-18 1.7E-22 141.6 20.9 252 76-338 56-377 (434)
166 KOG1524 WD40 repeat-containing 99.8 1.6E-18 3.4E-23 150.8 17.1 254 83-402 12-278 (737)
167 KOG4227 WD40 repeat protein [G 99.8 2.3E-17 4.9E-22 138.4 23.4 300 76-401 47-378 (609)
168 COG2319 FOG: WD40 repeat [Gene 99.8 7.4E-16 1.6E-20 142.5 35.3 245 80-337 60-318 (466)
169 KOG1009 Chromatin assembly com 99.8 4.7E-17 1E-21 137.1 23.2 273 84-402 12-364 (434)
170 KOG0290 Conserved WD40 repeat- 99.8 6.9E-17 1.5E-21 130.4 22.0 271 87-400 46-356 (364)
171 KOG2919 Guanine nucleotide-bin 99.8 5.2E-18 1.1E-22 138.7 15.2 228 85-324 104-361 (406)
172 KOG0307 Vesicle coat complex C 99.8 6.3E-19 1.4E-23 166.1 10.7 239 90-339 11-290 (1049)
173 PRK11028 6-phosphogluconolacto 99.8 5.8E-16 1.3E-20 138.3 29.1 237 86-336 35-307 (330)
174 KOG1188 WD40 repeat protein [G 99.8 4.2E-17 9.1E-22 134.4 17.8 265 98-402 41-338 (376)
175 KOG1538 Uncharacterized conser 99.8 3E-17 6.4E-22 146.5 18.1 249 70-336 38-296 (1081)
176 KOG1034 Transcriptional repres 99.8 3.3E-17 7.2E-22 134.3 16.9 237 83-333 87-383 (385)
177 KOG0642 Cell-cycle nuclear pro 99.8 1.1E-17 2.3E-22 146.6 14.7 251 79-339 288-567 (577)
178 KOG0771 Prolactin regulatory e 99.8 2.2E-17 4.8E-22 139.9 15.8 197 133-336 148-357 (398)
179 KOG0270 WD40 repeat-containing 99.8 3.8E-17 8.2E-22 139.1 15.7 204 80-294 238-454 (463)
180 KOG0290 Conserved WD40 repeat- 99.8 1.4E-16 3E-21 128.6 18.0 237 82-330 93-362 (364)
181 PRK03629 tolB translocation pr 99.8 6.8E-15 1.5E-19 135.2 31.6 177 156-336 179-366 (429)
182 KOG1272 WD40-repeat-containing 99.7 1.1E-17 2.3E-22 143.2 11.0 227 85-331 129-360 (545)
183 PRK01742 tolB translocation pr 99.7 2.3E-15 4.9E-20 138.7 27.4 170 156-336 184-364 (429)
184 KOG1963 WD40 repeat protein [G 99.7 3.3E-15 7.2E-20 137.7 27.7 286 79-401 199-530 (792)
185 KOG0303 Actin-binding protein 99.7 9.5E-16 2.1E-20 128.8 21.8 202 126-337 78-298 (472)
186 PRK04922 tolB translocation pr 99.7 9.4E-16 2E-20 141.5 23.6 177 156-336 184-371 (433)
187 PRK05137 tolB translocation pr 99.7 6.2E-15 1.3E-19 136.3 27.7 175 156-336 182-369 (435)
188 KOG0303 Actin-binding protein 99.7 1.1E-15 2.4E-20 128.5 20.3 224 77-314 73-320 (472)
189 PRK01742 tolB translocation pr 99.7 8.2E-16 1.8E-20 141.6 21.7 210 107-334 185-402 (429)
190 KOG1517 Guanine nucleotide bin 99.7 6.8E-16 1.5E-20 144.5 20.7 276 87-402 1066-1373(1387)
191 KOG1587 Cytoplasmic dynein int 99.7 8.1E-16 1.8E-20 141.0 20.9 251 107-403 223-509 (555)
192 KOG0644 Uncharacterized conser 99.7 2.3E-17 5E-22 150.6 10.4 248 79-338 184-473 (1113)
193 PRK03629 tolB translocation pr 99.7 7E-15 1.5E-19 135.1 25.2 213 108-334 181-407 (429)
194 KOG2394 WD40 protein DMR-N9 [G 99.7 6.9E-16 1.5E-20 134.6 17.1 243 88-390 126-384 (636)
195 KOG2110 Uncharacterized conser 99.7 9.1E-14 2E-18 116.2 28.8 232 87-336 48-333 (391)
196 KOG1963 WD40 repeat protein [G 99.7 4.5E-15 9.7E-20 136.8 23.1 261 90-402 21-314 (792)
197 KOG1524 WD40 repeat-containing 99.7 5.5E-16 1.2E-20 135.1 14.3 205 99-332 78-285 (737)
198 PRK04922 tolB translocation pr 99.7 8.8E-15 1.9E-19 135.1 23.2 213 108-334 186-412 (433)
199 PRK02889 tolB translocation pr 99.7 1.8E-14 3.9E-19 132.6 24.8 173 156-336 176-363 (427)
200 COG2319 FOG: WD40 repeat [Gene 99.7 1.1E-13 2.3E-18 128.1 30.2 231 127-402 63-306 (466)
201 KOG1188 WD40 repeat protein [G 99.7 2.2E-15 4.8E-20 124.4 15.5 181 156-341 50-250 (376)
202 KOG0649 WD40 repeat protein [G 99.7 6.8E-14 1.5E-18 110.5 22.9 197 131-339 12-241 (325)
203 KOG1587 Cytoplasmic dynein int 99.7 6.4E-15 1.4E-19 135.2 19.7 243 82-335 239-518 (555)
204 KOG2321 WD40 repeat protein [G 99.7 2.7E-14 5.8E-19 125.8 22.5 245 82-342 48-311 (703)
205 PF08662 eIF2A: Eukaryotic tra 99.7 1.3E-14 2.8E-19 117.8 18.9 146 180-333 10-179 (194)
206 PRK05137 tolB translocation pr 99.7 4.3E-14 9.3E-19 130.7 24.4 217 108-336 184-415 (435)
207 KOG0649 WD40 repeat protein [G 99.7 1.3E-13 2.8E-18 109.0 22.6 234 80-330 57-313 (325)
208 KOG4497 Uncharacterized conser 99.7 5.3E-14 1.2E-18 115.9 21.3 131 91-231 14-150 (447)
209 KOG0644 Uncharacterized conser 99.7 4.5E-16 9.7E-21 142.3 10.1 198 127-339 188-432 (1113)
210 KOG2315 Predicted translation 99.7 2E-13 4.3E-18 120.2 25.8 263 88-400 37-374 (566)
211 PRK02889 tolB translocation pr 99.6 7.5E-14 1.6E-18 128.5 24.3 204 108-325 178-392 (427)
212 TIGR02800 propeller_TolB tol-p 99.6 1.7E-13 3.7E-18 126.7 26.9 176 156-336 170-357 (417)
213 KOG2139 WD40 repeat protein [G 99.6 1.1E-13 2.4E-18 115.4 21.4 227 85-325 98-367 (445)
214 KOG0322 G-protein beta subunit 99.6 1.9E-14 4.1E-19 114.9 15.9 234 83-332 54-322 (323)
215 KOG1445 Tumor-specific antigen 99.6 2.5E-15 5.5E-20 133.6 12.1 141 192-337 601-754 (1012)
216 PF02239 Cytochrom_D1: Cytochr 99.6 6.2E-13 1.3E-17 118.7 27.4 189 98-297 6-210 (369)
217 PRK00178 tolB translocation pr 99.6 1E-12 2.3E-17 121.7 29.1 175 157-336 180-366 (430)
218 PF10282 Lactonase: Lactonase, 99.6 1.4E-11 3.1E-16 110.2 35.1 241 86-336 37-325 (345)
219 KOG1272 WD40-repeat-containing 99.6 2E-15 4.4E-20 129.5 9.5 200 129-341 129-331 (545)
220 KOG4497 Uncharacterized conser 99.6 4.7E-15 1E-19 122.0 10.8 179 134-322 13-197 (447)
221 KOG1310 WD40 repeat protein [G 99.6 1.3E-14 2.8E-19 127.1 13.9 238 75-342 40-312 (758)
222 KOG1523 Actin-related protein 99.6 6.6E-14 1.4E-18 114.9 17.0 208 174-403 9-229 (361)
223 KOG0642 Cell-cycle nuclear pro 99.6 2.3E-14 5E-19 125.9 14.4 233 127-403 292-554 (577)
224 KOG1517 Guanine nucleotide bin 99.6 2E-13 4.3E-18 128.4 20.5 241 84-336 1108-1384(1387)
225 KOG2139 WD40 repeat protein [G 99.6 9.8E-13 2.1E-17 109.8 21.6 248 128-400 97-365 (445)
226 KOG3881 Uncharacterized conser 99.6 3.8E-13 8.1E-18 113.4 19.0 248 82-340 52-327 (412)
227 TIGR02800 propeller_TolB tol-p 99.6 1.5E-12 3.3E-17 120.4 24.4 206 108-325 172-386 (417)
228 PRK00178 tolB translocation pr 99.5 4.4E-12 9.5E-17 117.5 25.8 214 108-333 181-406 (430)
229 PRK04792 tolB translocation pr 99.5 3.8E-12 8.3E-17 117.6 24.8 177 156-336 198-385 (448)
230 KOG0771 Prolactin regulatory e 99.5 1.4E-13 3E-18 117.1 14.0 188 89-289 148-354 (398)
231 KOG1334 WD40 repeat protein [G 99.5 8.4E-14 1.8E-18 120.4 12.8 250 79-338 136-429 (559)
232 PF08662 eIF2A: Eukaryotic tra 99.5 7.7E-13 1.7E-17 107.4 17.9 137 156-298 37-187 (194)
233 PF10282 Lactonase: Lactonase, 99.5 3.3E-10 7.2E-15 101.4 36.5 261 106-402 13-313 (345)
234 COG2706 3-carboxymuconate cycl 99.5 1.6E-10 3.5E-15 97.2 31.8 249 81-337 35-325 (346)
235 KOG1354 Serine/threonine prote 99.5 8.1E-13 1.8E-17 109.6 17.8 245 84-337 24-363 (433)
236 PRK04792 tolB translocation pr 99.5 4.7E-12 1E-16 117.0 24.7 214 108-332 200-424 (448)
237 KOG1523 Actin-related protein 99.5 2.2E-12 4.7E-17 106.1 19.4 235 83-330 8-275 (361)
238 PRK01029 tolB translocation pr 99.5 1.2E-11 2.5E-16 113.5 25.9 216 108-336 167-406 (428)
239 KOG2394 WD40 protein DMR-N9 [G 99.5 6.5E-13 1.4E-17 116.3 15.7 189 129-339 219-458 (636)
240 PF02239 Cytochrom_D1: Cytochr 99.5 2.3E-11 4.9E-16 108.8 25.3 235 89-337 40-351 (369)
241 KOG2111 Uncharacterized conser 99.5 7.6E-11 1.7E-15 97.1 25.9 212 107-335 76-324 (346)
242 COG5354 Uncharacterized protei 99.5 2.8E-11 6E-16 105.7 22.9 242 84-335 31-308 (561)
243 KOG1240 Protein kinase contain 99.5 2.8E-11 6.1E-16 116.0 24.5 253 76-338 1039-1339(1431)
244 KOG2314 Translation initiation 99.5 3.9E-11 8.4E-16 105.8 23.1 271 88-400 213-512 (698)
245 KOG4227 WD40 repeat protein [G 99.5 1.2E-11 2.6E-16 104.4 19.2 239 81-332 101-386 (609)
246 PRK01029 tolB translocation pr 99.5 4.8E-11 1E-15 109.5 24.7 224 84-315 183-426 (428)
247 KOG2315 Predicted translation 99.5 3.7E-11 8E-16 106.1 22.4 232 89-335 129-392 (566)
248 PRK04043 tolB translocation pr 99.4 2.1E-10 4.5E-15 104.6 27.0 173 156-336 169-360 (419)
249 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.1E-09 2.4E-14 95.9 29.5 236 93-341 53-338 (352)
250 COG2706 3-carboxymuconate cycl 99.4 2.2E-09 4.8E-14 90.5 30.0 261 105-402 15-312 (346)
251 KOG0974 WD-repeat protein WDR6 99.4 1.4E-11 3.1E-16 116.1 17.6 187 176-403 88-281 (967)
252 KOG1064 RAVE (regulator of V-A 99.4 6.7E-12 1.5E-16 124.2 14.1 192 128-342 2207-2407(2439)
253 KOG2041 WD40 repeat protein [G 99.4 7.5E-11 1.6E-15 107.1 19.2 232 80-325 9-280 (1189)
254 KOG3881 Uncharacterized conser 99.4 4.8E-11 1E-15 100.9 16.5 224 80-316 100-344 (412)
255 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.2E-08 2.5E-13 89.5 31.8 241 106-400 27-319 (352)
256 PF08450 SGL: SMP-30/Gluconola 99.3 2.1E-08 4.5E-13 85.6 30.8 221 134-400 4-245 (246)
257 PLN02919 haloacid dehalogenase 99.3 1.6E-08 3.4E-13 102.4 33.8 236 89-337 571-892 (1057)
258 KOG0280 Uncharacterized conser 99.3 7.6E-10 1.6E-14 90.4 19.6 219 108-338 48-289 (339)
259 KOG4547 WD40 repeat-containing 99.3 6.9E-10 1.5E-14 98.9 20.5 185 95-290 3-221 (541)
260 KOG4547 WD40 repeat-containing 99.3 8.6E-10 1.9E-14 98.3 21.1 184 140-336 4-223 (541)
261 KOG2314 Translation initiation 99.3 2.4E-09 5.2E-14 94.8 23.3 234 86-334 250-526 (698)
262 COG4946 Uncharacterized protei 99.3 3.9E-09 8.4E-14 91.9 23.7 144 186-337 331-481 (668)
263 KOG1310 WD40 repeat protein [G 99.3 1.1E-11 2.5E-16 109.0 8.5 158 122-288 44-230 (758)
264 KOG1409 Uncharacterized conser 99.3 5.5E-10 1.2E-14 93.1 17.3 200 79-288 62-269 (404)
265 PRK04043 tolB translocation pr 99.3 7E-09 1.5E-13 94.7 26.3 193 131-335 189-402 (419)
266 KOG1240 Protein kinase contain 99.3 1.2E-09 2.6E-14 105.2 21.0 214 119-341 1039-1281(1431)
267 KOG2321 WD40 repeat protein [G 99.2 2.2E-09 4.7E-14 95.4 19.0 177 156-340 155-350 (703)
268 PF04762 IKI3: IKI3 family; I 99.2 7E-08 1.5E-12 96.0 30.8 301 83-403 73-449 (928)
269 KOG1334 WD40 repeat protein [G 99.2 6.7E-10 1.5E-14 96.7 13.5 205 122-335 136-368 (559)
270 KOG3914 WD repeat protein WDR4 99.2 9.4E-10 2E-14 93.7 13.8 161 179-343 66-233 (390)
271 COG4946 Uncharacterized protei 99.2 1.8E-08 4E-13 87.8 21.8 147 79-235 353-509 (668)
272 COG5354 Uncharacterized protei 99.2 4E-08 8.6E-13 86.4 23.9 237 90-337 136-399 (561)
273 KOG0974 WD-repeat protein WDR6 99.1 2E-09 4.2E-14 102.1 16.5 176 156-339 109-294 (967)
274 TIGR03300 assembly_YfgL outer 99.1 1.4E-07 3E-12 86.1 28.0 219 96-337 104-342 (377)
275 PF07433 DUF1513: Protein of u 99.1 1.2E-07 2.6E-12 80.3 25.0 239 86-335 5-285 (305)
276 PF08450 SGL: SMP-30/Gluconola 99.1 1.2E-06 2.7E-11 74.7 31.5 212 90-322 4-244 (246)
277 PF04762 IKI3: IKI3 family; I 99.1 2.8E-07 6E-12 91.9 31.0 201 128-336 74-336 (928)
278 PLN02919 haloacid dehalogenase 99.1 2.5E-07 5.5E-12 93.8 30.6 193 134-336 572-836 (1057)
279 KOG1354 Serine/threonine prote 99.1 6.8E-09 1.5E-13 86.7 15.9 199 82-291 81-361 (433)
280 KOG1409 Uncharacterized conser 99.1 1.2E-08 2.5E-13 85.4 17.2 250 76-340 15-277 (404)
281 PF15492 Nbas_N: Neuroblastoma 99.1 3.3E-07 7.2E-12 75.4 24.8 227 91-337 3-263 (282)
282 KOG1064 RAVE (regulator of V-A 99.1 1E-09 2.2E-14 109.2 11.1 195 81-299 2204-2408(2439)
283 TIGR03300 assembly_YfgL outer 99.1 3.6E-07 7.8E-12 83.4 27.0 220 97-338 65-302 (377)
284 KOG4532 WD40-like repeat conta 99.0 1.1E-07 2.4E-12 77.0 20.0 191 140-339 83-288 (344)
285 COG5170 CDC55 Serine/threonine 99.0 4.9E-09 1.1E-13 86.5 12.1 240 84-334 25-368 (460)
286 PF13360 PQQ_2: PQQ-like domai 99.0 1.1E-06 2.4E-11 74.6 26.5 214 106-336 3-233 (238)
287 KOG1912 WD40 repeat protein [G 99.0 9.4E-08 2E-12 88.3 20.2 236 87-336 17-307 (1062)
288 KOG0280 Uncharacterized conser 99.0 1.6E-07 3.5E-12 77.1 18.1 240 85-336 69-336 (339)
289 KOG4190 Uncharacterized conser 98.9 1.3E-09 2.8E-14 96.6 6.3 204 122-336 729-951 (1034)
290 KOG4532 WD40-like repeat conta 98.9 2.8E-07 6E-12 74.8 18.8 236 89-336 71-334 (344)
291 KOG0309 Conserved WD40 repeat- 98.9 5.9E-09 1.3E-13 95.5 10.2 194 85-289 24-232 (1081)
292 KOG2041 WD40 repeat protein [G 98.9 2.2E-07 4.7E-12 85.3 17.2 229 79-320 65-325 (1189)
293 PF06433 Me-amine-dh_H: Methyl 98.8 3.7E-06 8.1E-11 72.2 23.5 242 90-340 40-327 (342)
294 PF07433 DUF1513: Protein of u 98.8 6.3E-06 1.4E-10 70.0 24.2 199 134-338 9-252 (305)
295 KOG4714 Nucleoporin [Nuclear s 98.8 1.8E-07 3.8E-12 75.5 13.1 176 142-331 102-316 (319)
296 KOG4190 Uncharacterized conser 98.8 2.6E-08 5.6E-13 88.5 8.8 236 79-331 729-986 (1034)
297 COG5170 CDC55 Serine/threonine 98.7 1.8E-07 3.9E-12 77.4 11.9 199 128-337 25-313 (460)
298 PF00400 WD40: WD domain, G-be 98.7 4.1E-08 9E-13 56.9 6.1 39 291-331 1-39 (39)
299 PRK11138 outer membrane biogen 98.7 8.3E-06 1.8E-10 74.8 24.2 221 98-338 70-317 (394)
300 KOG1920 IkappaB kinase complex 98.7 6.2E-06 1.4E-10 80.5 23.6 236 90-336 23-325 (1265)
301 PRK11138 outer membrane biogen 98.7 1.4E-05 3E-10 73.4 25.1 220 98-337 121-357 (394)
302 KOG2695 WD40 repeat protein [G 98.7 1.2E-07 2.7E-12 79.5 9.7 145 192-342 232-385 (425)
303 COG0823 TolB Periplasmic compo 98.7 8.3E-06 1.8E-10 74.3 22.4 176 156-336 173-361 (425)
304 PF15492 Nbas_N: Neuroblastoma 98.7 1.7E-05 3.8E-10 65.5 21.9 198 86-299 44-269 (282)
305 KOG3914 WD repeat protein WDR4 98.7 6.5E-07 1.4E-11 76.7 14.2 155 87-251 64-227 (390)
306 KOG0882 Cyclophilin-related pe 98.7 3.8E-07 8.3E-12 79.2 12.9 247 82-340 6-312 (558)
307 PRK02888 nitrous-oxide reducta 98.7 1.5E-05 3.2E-10 74.2 24.0 166 156-334 215-405 (635)
308 KOG1912 WD40 repeat protein [G 98.7 1.3E-05 2.7E-10 74.8 22.9 94 272-401 439-542 (1062)
309 KOG2695 WD40 repeat protein [G 98.7 1.2E-07 2.5E-12 79.6 8.9 151 92-253 218-382 (425)
310 PF04053 Coatomer_WDAD: Coatom 98.6 1.5E-05 3.3E-10 72.8 22.5 221 84-336 31-265 (443)
311 PF00400 WD40: WD domain, G-be 98.6 1.2E-07 2.7E-12 54.8 5.8 37 250-287 3-39 (39)
312 PF13360 PQQ_2: PQQ-like domai 98.6 0.00011 2.4E-09 62.3 26.5 183 96-295 35-236 (238)
313 KOG4714 Nucleoporin [Nuclear s 98.6 1E-06 2.2E-11 71.2 12.4 74 259-334 180-255 (319)
314 KOG1275 PAB-dependent poly(A) 98.6 3.8E-07 8.3E-12 85.9 11.1 178 184-403 146-335 (1118)
315 COG3386 Gluconolactonase [Carb 98.6 8.1E-05 1.8E-09 64.7 23.4 207 156-400 47-275 (307)
316 KOG0882 Cyclophilin-related pe 98.5 1.5E-06 3.3E-11 75.6 12.4 208 128-342 8-240 (558)
317 KOG1920 IkappaB kinase complex 98.5 9.4E-05 2E-09 72.6 23.9 197 85-292 68-325 (1265)
318 PF11768 DUF3312: Protein of u 98.5 1.6E-05 3.4E-10 72.3 17.5 90 242-336 239-332 (545)
319 COG0823 TolB Periplasmic compo 98.5 5.6E-06 1.2E-10 75.4 15.0 191 128-324 191-390 (425)
320 PF02897 Peptidase_S9_N: Proly 98.4 0.00049 1.1E-08 63.7 27.5 244 87-336 125-407 (414)
321 PF04841 Vps16_N: Vps16, N-ter 98.4 0.001 2.3E-08 60.9 27.8 218 91-331 34-285 (410)
322 KOG3617 WD40 and TPR repeat-co 98.4 9.4E-06 2E-10 76.3 14.4 102 91-202 21-131 (1416)
323 KOG1275 PAB-dependent poly(A) 98.4 1.2E-05 2.6E-10 76.2 15.0 176 98-287 148-340 (1118)
324 PF03178 CPSF_A: CPSF A subuni 98.4 0.00097 2.1E-08 59.4 26.7 173 156-335 2-204 (321)
325 PF14583 Pectate_lyase22: Olig 98.4 0.0014 3E-08 57.9 29.3 219 92-324 42-303 (386)
326 KOG1832 HIV-1 Vpr-binding prot 98.4 1.4E-06 3E-11 82.1 8.2 238 79-336 1095-1401(1516)
327 PF03178 CPSF_A: CPSF A subuni 98.4 0.0017 3.7E-08 57.8 27.7 215 107-331 3-263 (321)
328 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00048 1E-08 62.1 23.5 229 94-335 1-315 (353)
329 KOG0309 Conserved WD40 repeat- 98.3 4.1E-06 8.9E-11 77.4 9.6 201 79-290 108-340 (1081)
330 COG3391 Uncharacterized conser 98.2 0.0034 7.4E-08 57.1 27.3 241 87-340 32-290 (381)
331 KOG2114 Vacuolar assembly/sort 98.2 0.00047 1E-08 65.5 21.0 201 87-298 27-252 (933)
332 KOG1832 HIV-1 Vpr-binding prot 98.2 6.8E-07 1.5E-11 84.1 2.6 194 122-342 1095-1300(1516)
333 COG3386 Gluconolactonase [Carb 98.2 0.0017 3.6E-08 56.6 23.0 211 92-322 31-274 (307)
334 PF08553 VID27: VID27 cytoplas 98.2 0.0011 2.4E-08 64.4 23.7 127 156-288 504-646 (794)
335 PF11768 DUF3312: Protein of u 98.2 0.00069 1.5E-08 61.9 20.6 115 173-292 203-332 (545)
336 cd00216 PQQ_DH Dehydrogenases 98.2 0.0044 9.4E-08 58.5 26.9 229 98-340 111-431 (488)
337 KOG1645 RING-finger-containing 98.1 0.00025 5.4E-09 61.4 15.8 244 78-334 186-462 (463)
338 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0026 5.7E-08 57.4 23.6 234 85-322 42-346 (353)
339 PF08553 VID27: VID27 cytoplas 98.1 0.00037 8.1E-09 67.5 18.8 132 193-333 503-647 (794)
340 KOG2114 Vacuolar assembly/sort 98.1 0.0012 2.7E-08 62.7 21.1 188 137-337 31-247 (933)
341 PRK02888 nitrous-oxide reducta 98.1 0.0013 2.8E-08 61.7 21.1 102 184-290 285-405 (635)
342 PF00780 CNH: CNH domain; Int 98.1 0.0032 6.8E-08 54.7 22.9 196 88-299 38-265 (275)
343 KOG3621 WD40 repeat-containing 98.1 0.0014 3.1E-08 61.0 20.6 202 81-297 29-253 (726)
344 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0061 1.3E-07 56.0 24.8 169 157-337 62-250 (410)
345 PF04053 Coatomer_WDAD: Coatom 98.0 0.00078 1.7E-08 61.8 18.7 210 129-402 32-254 (443)
346 KOG2066 Vacuolar assembly/sort 98.0 9.2E-05 2E-09 69.5 12.7 122 235-403 55-181 (846)
347 COG3391 Uncharacterized conser 98.0 0.0071 1.5E-07 55.1 24.6 216 87-314 75-309 (381)
348 PF06977 SdiA-regulated: SdiA- 98.0 0.0066 1.4E-07 51.1 25.1 195 80-286 16-247 (248)
349 PF06977 SdiA-regulated: SdiA- 98.0 0.0073 1.6E-07 50.8 24.5 196 122-330 15-247 (248)
350 cd00216 PQQ_DH Dehydrogenases 98.0 0.015 3.2E-07 55.0 26.8 228 96-338 61-379 (488)
351 PF06433 Me-amine-dh_H: Methyl 97.9 0.011 2.3E-07 51.5 25.5 198 90-299 99-330 (342)
352 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.023 4.9E-07 54.1 25.9 235 97-337 121-494 (527)
353 PF08596 Lgl_C: Lethal giant l 97.8 0.02 4.4E-07 52.0 23.1 231 87-338 3-295 (395)
354 KOG2066 Vacuolar assembly/sort 97.8 0.0024 5.3E-08 60.4 17.3 152 80-247 53-233 (846)
355 PF00780 CNH: CNH domain; Int 97.8 0.02 4.4E-07 49.7 23.7 216 95-339 5-261 (275)
356 PF05694 SBP56: 56kDa selenium 97.8 0.026 5.6E-07 50.6 23.2 224 96-322 86-392 (461)
357 COG3490 Uncharacterized protei 97.8 0.018 3.8E-07 48.2 20.6 238 87-332 69-347 (366)
358 KOG3621 WD40 repeat-containing 97.7 0.00014 2.9E-09 67.5 8.4 114 259-403 34-147 (726)
359 PRK13616 lipoprotein LpqB; Pro 97.7 0.0035 7.5E-08 60.0 17.7 138 189-334 324-477 (591)
360 KOG1008 Uncharacterized conser 97.7 1.2E-05 2.6E-10 73.3 1.0 194 132-335 61-277 (783)
361 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0067 1.5E-07 43.3 13.8 65 261-332 2-70 (111)
362 KOG1645 RING-finger-containing 97.6 0.00023 4.9E-09 61.6 7.5 93 241-337 175-270 (463)
363 PF10647 Gmad1: Lipoprotein Lp 97.6 0.024 5.2E-07 48.4 19.7 119 216-337 25-148 (253)
364 smart00320 WD40 WD40 repeats. 97.6 0.00029 6.2E-09 39.7 5.7 38 292-331 3-40 (40)
365 KOG2395 Protein involved in va 97.5 0.002 4.3E-08 58.2 12.6 135 194-334 356-501 (644)
366 PF14583 Pectate_lyase22: Olig 97.5 0.059 1.3E-06 47.9 27.3 242 90-336 85-384 (386)
367 PF02897 Peptidase_S9_N: Proly 97.5 0.082 1.8E-06 49.0 23.5 200 131-333 125-357 (414)
368 KOG1897 Damage-specific DNA bi 97.5 0.13 2.8E-06 50.6 26.4 229 98-335 685-944 (1096)
369 KOG4640 Anaphase-promoting com 97.5 0.00066 1.4E-08 62.4 8.8 93 216-313 22-115 (665)
370 KOG4640 Anaphase-promoting com 97.4 0.00072 1.6E-08 62.1 8.6 79 258-340 20-99 (665)
371 smart00320 WD40 WD40 repeats. 97.4 0.00052 1.1E-08 38.5 5.0 35 252-287 6-40 (40)
372 KOG2079 Vacuolar assembly/sort 97.4 0.0011 2.5E-08 64.6 9.6 99 235-336 105-206 (1206)
373 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.023 5E-07 40.6 13.3 92 142-242 16-109 (111)
374 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.073 1.6E-06 44.1 20.9 33 92-124 100-133 (354)
375 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.078 1.7E-06 43.9 20.9 140 97-249 23-167 (354)
376 KOG3617 WD40 and TPR repeat-co 97.3 0.00082 1.8E-08 63.9 7.2 116 218-337 19-135 (1416)
377 PF05096 Glu_cyclase_2: Glutam 97.3 0.089 1.9E-06 44.3 25.3 182 85-279 44-251 (264)
378 PRK13616 lipoprotein LpqB; Pro 97.3 0.02 4.3E-07 55.0 16.5 152 177-337 351-529 (591)
379 KOG1008 Uncharacterized conser 97.3 4.2E-05 9E-10 70.0 -1.3 164 79-248 96-276 (783)
380 KOG2395 Protein involved in va 97.2 0.0078 1.7E-07 54.5 12.4 139 141-288 346-499 (644)
381 PF05096 Glu_cyclase_2: Glutam 97.2 0.12 2.5E-06 43.6 26.6 190 122-322 37-249 (264)
382 PRK10115 protease 2; Provision 97.2 0.3 6.5E-06 48.3 28.6 240 87-336 128-397 (686)
383 COG3204 Uncharacterized protei 97.1 0.13 2.7E-06 43.6 19.1 191 81-281 81-305 (316)
384 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.21 4.5E-06 45.5 27.3 77 259-337 308-402 (415)
385 COG3490 Uncharacterized protei 97.1 0.042 9.1E-07 46.1 14.2 158 164-323 56-245 (366)
386 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.9 0.41 8.8E-06 45.7 29.1 189 96-294 69-338 (527)
387 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0057 1.2E-07 36.4 5.9 34 302-336 10-43 (47)
388 PHA02713 hypothetical protein; 96.9 0.32 6.9E-06 46.9 20.8 216 108-336 274-536 (557)
389 PF08596 Lgl_C: Lethal giant l 96.8 0.32 7E-06 44.3 19.3 194 79-279 80-327 (395)
390 PF05694 SBP56: 56kDa selenium 96.8 0.39 8.4E-06 43.4 22.7 189 141-337 88-346 (461)
391 COG3204 Uncharacterized protei 96.7 0.31 6.7E-06 41.4 19.4 162 127-298 83-271 (316)
392 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0075 1.6E-07 35.9 5.2 34 258-293 11-44 (47)
393 KOG4499 Ca2+-binding protein R 96.6 0.29 6.2E-06 40.1 20.1 202 105-321 36-272 (310)
394 PRK10115 protease 2; Provision 96.5 1 2.2E-05 44.6 23.9 202 130-334 127-345 (686)
395 KOG1897 Damage-specific DNA bi 96.4 1.2 2.6E-05 44.3 21.2 213 108-331 752-1002(1096)
396 KOG4441 Proteins containing BT 96.1 1.4 3E-05 42.6 20.7 189 141-336 285-502 (571)
397 KOG2444 WD40 repeat protein [G 96.1 0.022 4.7E-07 46.1 6.5 103 235-340 76-184 (238)
398 KOG4441 Proteins containing BT 96.0 1.7 3.7E-05 42.0 21.4 232 95-336 283-549 (571)
399 PF12234 Rav1p_C: RAVE protein 95.9 0.25 5.4E-06 47.3 13.4 108 87-201 31-155 (631)
400 COG3823 Glutamine cyclotransfe 95.8 0.54 1.2E-05 37.8 12.8 164 167-337 35-208 (262)
401 PF08728 CRT10: CRT10; InterP 95.8 0.5 1.1E-05 45.9 15.2 115 217-333 103-246 (717)
402 COG3823 Glutamine cyclotransfe 95.8 0.62 1.4E-05 37.5 13.1 103 96-206 55-162 (262)
403 PF07995 GSDH: Glucose / Sorbo 95.8 1.3 2.9E-05 39.5 28.7 238 87-328 3-330 (331)
404 PF12234 Rav1p_C: RAVE protein 95.8 0.53 1.1E-05 45.2 15.2 96 236-334 48-157 (631)
405 COG5167 VID27 Protein involved 95.7 0.42 9.1E-06 43.8 13.2 141 185-335 477-634 (776)
406 TIGR02604 Piru_Ver_Nterm putat 95.5 1.1 2.4E-05 40.7 16.0 137 176-322 14-202 (367)
407 KOG3630 Nuclear pore complex, 95.5 0.19 4.1E-06 50.3 11.2 143 175-321 100-261 (1405)
408 KOG1916 Nuclear protein, conta 95.2 0.024 5.2E-07 54.9 4.2 121 216-338 182-328 (1283)
409 KOG2079 Vacuolar assembly/sort 95.1 0.14 3E-06 50.8 9.0 99 96-201 98-202 (1206)
410 KOG2444 WD40 repeat protein [G 95.1 0.026 5.6E-07 45.7 3.6 95 192-289 78-177 (238)
411 PF10168 Nup88: Nuclear pore c 95.1 0.49 1.1E-05 46.6 12.9 76 259-336 85-182 (717)
412 TIGR03074 PQQ_membr_DH membran 95.0 4.3 9.3E-05 40.6 23.7 178 156-342 270-486 (764)
413 PF10647 Gmad1: Lipoprotein Lp 95.0 2.1 4.5E-05 36.6 18.8 157 87-254 25-204 (253)
414 PF10313 DUF2415: Uncharacteri 94.9 0.11 2.4E-06 30.0 4.9 31 304-334 1-34 (43)
415 COG5276 Uncharacterized conser 94.9 2.1 4.6E-05 36.6 23.9 159 169-336 80-244 (370)
416 TIGR02604 Piru_Ver_Nterm putat 94.9 2.7 5.9E-05 38.2 16.5 79 240-322 48-142 (367)
417 PF10313 DUF2415: Uncharacteri 94.8 0.17 3.8E-06 29.1 5.5 31 259-290 1-34 (43)
418 PHA02713 hypothetical protein; 94.8 2.4 5.3E-05 40.9 16.6 189 96-295 303-539 (557)
419 TIGR03118 PEPCTERM_chp_1 conse 94.7 2.5 5.4E-05 36.4 22.5 199 130-337 23-283 (336)
420 KOG2377 Uncharacterized conser 94.7 0.76 1.7E-05 41.5 11.7 154 89-248 26-186 (657)
421 PF14870 PSII_BNR: Photosynthe 94.5 3 6.5E-05 36.5 27.3 236 84-336 15-263 (302)
422 PF07569 Hira: TUP1-like enhan 94.4 0.33 7.1E-06 40.3 8.7 69 266-336 18-98 (219)
423 PF15390 DUF4613: Domain of un 94.3 5 0.00011 37.9 23.1 116 82-202 53-186 (671)
424 COG5167 VID27 Protein involved 94.2 1.9 4.1E-05 39.8 13.2 127 156-289 490-632 (776)
425 PF14870 PSII_BNR: Photosynthe 94.1 3.8 8.3E-05 35.9 24.3 186 128-331 15-213 (302)
426 PF15390 DUF4613: Domain of un 93.8 4.7 0.0001 38.0 15.3 148 175-335 19-188 (671)
427 KOG4499 Ca2+-binding protein R 93.7 3.5 7.5E-05 34.1 20.7 98 258-391 157-264 (310)
428 PF09826 Beta_propel: Beta pro 93.4 7.5 0.00016 37.1 23.2 189 140-336 283-521 (521)
429 COG5276 Uncharacterized conser 93.4 4.5 9.8E-05 34.6 20.5 194 128-337 85-289 (370)
430 PF05935 Arylsulfotrans: Aryls 93.4 7.3 0.00016 36.9 16.6 136 194-337 128-305 (477)
431 TIGR02276 beta_rpt_yvtn 40-res 93.1 0.82 1.8E-05 26.1 6.5 32 268-300 1-33 (42)
432 PF07569 Hira: TUP1-like enhan 92.9 0.73 1.6E-05 38.3 8.2 66 131-203 14-96 (219)
433 KOG1900 Nuclear pore complex, 92.8 5.5 0.00012 41.2 15.2 160 171-336 74-275 (1311)
434 KOG2377 Uncharacterized conser 92.3 4 8.6E-05 37.2 12.1 79 256-337 64-144 (657)
435 PF07995 GSDH: Glucose / Sorbo 92.2 8.3 0.00018 34.5 26.0 95 131-233 3-131 (331)
436 PHA03098 kelch-like protein; P 91.7 13 0.00029 35.8 19.6 194 137-336 292-514 (534)
437 PF08801 Nucleoporin_N: Nup133 91.5 7 0.00015 36.4 13.9 32 304-335 190-221 (422)
438 PF14655 RAB3GAP2_N: Rab3 GTPa 91.4 5.3 0.00012 36.7 12.3 40 79-118 301-341 (415)
439 PF13449 Phytase-like: Esteras 91.3 10 0.00022 33.8 17.2 61 260-322 86-165 (326)
440 KOG2247 WD40 repeat-containing 91.2 0.028 6.1E-07 50.7 -2.0 135 130-274 35-175 (615)
441 COG4880 Secreted protein conta 91.2 8.2 0.00018 34.9 12.8 170 156-334 406-593 (603)
442 PF14761 HPS3_N: Hermansky-Pud 91.1 7.4 0.00016 31.8 16.1 134 140-288 29-213 (215)
443 PHA03098 kelch-like protein; P 91.1 15 0.00033 35.4 19.8 191 95-293 293-515 (534)
444 PF14761 HPS3_N: Hermansky-Pud 91.0 7.7 0.00017 31.7 13.0 110 222-336 23-166 (215)
445 KOG3630 Nuclear pore complex, 90.6 3.8 8.3E-05 41.7 11.3 113 217-334 103-229 (1405)
446 KOG4460 Nuclear pore complex, 90.4 13 0.00029 34.6 13.6 77 260-338 105-203 (741)
447 TIGR03606 non_repeat_PQQ dehyd 90.4 15 0.00033 34.2 16.3 57 258-315 29-90 (454)
448 TIGR03118 PEPCTERM_chp_1 conse 90.3 11 0.00025 32.6 23.3 217 87-313 24-307 (336)
449 PF09826 Beta_propel: Beta pro 90.0 18 0.0004 34.6 22.5 103 95-199 20-144 (521)
450 COG4590 ABC-type uncharacteriz 89.2 2.5 5.4E-05 38.4 8.1 164 168-339 212-392 (733)
451 KOG2280 Vacuolar assembly/sort 89.1 17 0.00037 35.6 13.8 68 80-149 79-147 (829)
452 KOG1916 Nuclear protein, conta 89.0 0.21 4.5E-06 48.8 1.5 98 239-340 153-273 (1283)
453 KOG1983 Tomosyn and related SN 88.9 14 0.00031 38.3 14.4 73 256-337 196-268 (993)
454 PHA02790 Kelch-like protein; P 87.5 27 0.00058 33.2 19.6 170 156-336 287-473 (480)
455 COG1520 FOG: WD40-like repeat 87.4 22 0.00049 32.3 23.2 195 95-299 67-278 (370)
456 PF10214 Rrn6: RNA polymerase 87.3 36 0.00078 34.6 27.0 117 214-336 145-279 (765)
457 PF11715 Nup160: Nucleoporin N 87.1 8 0.00017 37.4 11.1 38 260-298 216-257 (547)
458 PF07676 PD40: WD40-like Beta 86.8 3.5 7.6E-05 23.0 5.3 31 255-286 5-38 (39)
459 KOG0783 Uncharacterized conser 86.7 35 0.00076 34.1 14.4 109 89-206 188-315 (1267)
460 COG4590 ABC-type uncharacteriz 86.6 3.4 7.3E-05 37.6 7.3 159 80-249 215-388 (733)
461 PF11715 Nup160: Nucleoporin N 86.5 3.2 6.9E-05 40.2 8.1 34 305-338 216-253 (547)
462 PF07676 PD40: WD40-like Beta 86.2 4.2 9.1E-05 22.7 5.6 28 303-330 8-38 (39)
463 KOG2280 Vacuolar assembly/sort 86.0 37 0.00081 33.4 19.2 193 108-314 66-270 (829)
464 PF10214 Rrn6: RNA polymerase 86.0 43 0.00092 34.1 17.3 112 86-203 146-277 (765)
465 PF03022 MRJP: Major royal jel 85.8 23 0.0005 30.9 24.7 206 87-321 2-253 (287)
466 KOG1898 Splicing factor 3b, su 85.8 45 0.00099 34.2 19.0 171 157-336 854-1051(1205)
467 PHA02790 Kelch-like protein; P 85.8 33 0.00071 32.6 18.1 181 96-292 271-473 (480)
468 PF12657 TFIIIC_delta: Transcr 85.4 11 0.00024 29.9 9.4 30 259-289 86-121 (173)
469 PF10395 Utp8: Utp8 family; I 85.4 39 0.00085 33.1 24.5 235 91-338 33-310 (670)
470 COG1770 PtrB Protease II [Amin 85.4 38 0.00082 32.9 25.1 202 87-295 130-354 (682)
471 PF03022 MRJP: Major royal jel 85.2 25 0.00054 30.7 22.4 136 195-335 35-217 (287)
472 KOG1520 Predicted alkaloid syn 85.0 29 0.00062 31.2 12.4 158 176-336 115-296 (376)
473 PF14269 Arylsulfotran_2: Aryl 84.9 26 0.00057 30.8 15.3 72 260-333 145-220 (299)
474 PF12657 TFIIIC_delta: Transcr 84.6 7.1 0.00015 31.1 7.9 31 305-335 87-123 (173)
475 KOG2247 WD40 repeat-containing 84.6 0.15 3.3E-06 46.2 -1.7 140 180-327 39-182 (615)
476 PF03088 Str_synth: Strictosid 84.6 6.9 0.00015 27.1 6.7 44 235-278 33-76 (89)
477 KOG1898 Splicing factor 3b, su 84.6 52 0.0011 33.8 16.5 137 196-337 855-1008(1205)
478 PF10168 Nup88: Nuclear pore c 84.6 47 0.001 33.3 18.5 76 86-166 85-181 (717)
479 PF08728 CRT10: CRT10; InterP 84.5 45 0.00098 33.1 16.2 144 97-246 49-245 (717)
480 PF10395 Utp8: Utp8 family; I 84.3 44 0.00095 32.8 17.2 159 84-250 128-308 (670)
481 PF07250 Glyoxal_oxid_N: Glyox 84.1 24 0.00052 29.8 11.0 137 157-299 47-207 (243)
482 COG4257 Vgb Streptogramin lyas 83.6 27 0.00059 29.9 16.2 194 131-336 63-265 (353)
483 PF11635 Med16: Mediator compl 83.3 55 0.0012 33.2 20.0 81 304-403 260-343 (753)
484 PF14727 PHTB1_N: PTHB1 N-term 82.8 40 0.00087 31.2 22.8 225 138-403 34-353 (418)
485 PF03088 Str_synth: Strictosid 82.0 14 0.00031 25.5 8.2 40 193-233 36-75 (89)
486 PF02333 Phytase: Phytase; In 81.7 41 0.00089 30.6 21.7 186 139-335 66-292 (381)
487 PF05935 Arylsulfotrans: Aryls 80.8 52 0.0011 31.2 15.5 190 139-337 113-371 (477)
488 TIGR03032 conserved hypothetic 80.4 40 0.00087 29.6 13.4 85 226-315 212-316 (335)
489 KOG1900 Nuclear pore complex, 79.6 44 0.00095 35.2 12.6 139 140-290 90-273 (1311)
490 TIGR02171 Fb_sc_TIGR02171 Fibr 79.0 21 0.00046 36.0 10.1 54 279-336 328-388 (912)
491 TIGR02171 Fb_sc_TIGR02171 Fibr 78.7 16 0.00034 36.9 9.2 79 239-319 329-414 (912)
492 PF01731 Arylesterase: Arylest 78.5 12 0.00026 25.7 6.1 31 304-334 54-85 (86)
493 KOG3616 Selective LIM binding 77.3 53 0.0012 32.4 11.8 68 128-200 13-81 (1636)
494 PF05787 DUF839: Bacterial pro 76.8 50 0.0011 31.7 11.8 20 302-321 500-519 (524)
495 PF12768 Rax2: Cortical protei 76.8 20 0.00043 31.1 8.4 52 283-336 18-75 (281)
496 TIGR03606 non_repeat_PQQ dehyd 76.4 68 0.0015 30.1 20.2 106 215-325 30-167 (454)
497 PF07250 Glyoxal_oxid_N: Glyox 75.8 12 0.00027 31.5 6.7 83 241-324 48-138 (243)
498 smart00564 PQQ beta-propeller 74.4 8.9 0.00019 20.2 3.9 24 272-296 8-31 (33)
499 PF01436 NHL: NHL repeat; Int 73.6 10 0.00023 19.4 4.0 25 261-286 4-28 (28)
500 PF14781 BBS2_N: Ciliary BBSom 73.6 36 0.00079 25.6 11.4 111 90-208 3-131 (136)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-45 Score=303.58 Aligned_cols=274 Identities=15% Similarity=0.254 Sum_probs=238.4
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (403)
..+.+|.+.|.|++|+|+|+.|++|+ |.++|+||+.+.... .++. +|...|.+++|+||+..+++++.+ |+
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~--~t~K-gH~~WVlcvawsPDgk~iASG~~d-----g~ 180 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL--FTCK-GHKNWVLCVAWSPDGKKIASGSKD-----GS 180 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc--eeec-CCccEEEEEEECCCcchhhccccC-----Ce
Confidence 56789999999999999999999998 666999999988776 6676 899999999999999999999999 99
Q ss_pred EEEEECCCCceeE-EEe-cCCceeEEEEec-----CceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650 158 VMIWDDHQSRCIG-ELS-FRSEVRSVKLRR-----DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (403)
Q Consensus 158 i~iwd~~~~~~~~-~~~-~~~~i~~~~~~~-----~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (403)
|++||.++|+++. .+. |...|++++|.| ..++++ -||.|+|||+..+.++..+.+|..++++++|--++
T Consensus 181 I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g- 259 (480)
T KOG0271|consen 181 IRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG- 259 (480)
T ss_pred EEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-
Confidence 9999999997664 566 999999999976 466777 39999999999999999999999999888775433
Q ss_pred eEEEEeeCCccCeEEEEEccCCc---------------------------------------------------------
Q 015650 228 SLVLVCPGLQKGQVRVEHYASKR--------------------------------------------------------- 250 (403)
Q Consensus 228 ~~~~~~~g~~d~~i~v~d~~~~~--------------------------------------------------------- 250 (403)
++ ++|+.|++|++|+...+.
T Consensus 260 --li-ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~ 336 (480)
T KOG0271|consen 260 --LI-YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG 336 (480)
T ss_pred --eE-EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence 23 347799999999864311
Q ss_pred -----------------------eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEE
Q 015650 251 -----------------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY 307 (403)
Q Consensus 251 -----------------------~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~ 307 (403)
+..+.+|..-|..+.||||++++|+++.|.. |++||.++|+.+.+|++ |-..|+
T Consensus 337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-VkLW~g~tGk~lasfRG--Hv~~VY 413 (480)
T KOG0271|consen 337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS-VKLWDGRTGKFLASFRG--HVAAVY 413 (480)
T ss_pred ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc-eeeeeCCCcchhhhhhh--ccceeE
Confidence 0123567888999999999999999999999 99999999999999997 679999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEE
Q 015650 308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA 387 (403)
Q Consensus 308 ~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (403)
.++|+.|.++|++|+.|.++++|++++.+.. ..+.+|.+.|.++.
T Consensus 414 qvawsaDsRLlVS~SkDsTLKvw~V~tkKl~-----------------------------------~DLpGh~DEVf~vD 458 (480)
T KOG0271|consen 414 QVAWSADSRLLVSGSKDSTLKVWDVRTKKLK-----------------------------------QDLPGHADEVFAVD 458 (480)
T ss_pred EEEeccCccEEEEcCCCceEEEEEeeeeeec-----------------------------------ccCCCCCceEEEEE
Confidence 9999999999999999999999999998842 22567788999999
Q ss_pred eccCCCEEEEEccCC
Q 015650 388 FGHQKNTVVILGMDG 402 (403)
Q Consensus 388 fs~d~~~l~~~~~dG 402 (403)
|+|||+.+++|+.|.
T Consensus 459 wspDG~rV~sggkdk 473 (480)
T KOG0271|consen 459 WSPDGQRVASGGKDK 473 (480)
T ss_pred ecCCCceeecCCCce
Confidence 999999999999884
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.1e-43 Score=293.93 Aligned_cols=274 Identities=16% Similarity=0.203 Sum_probs=249.0
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC--eEEEeeCCCCCCCCCce
Q 015650 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPLNK 157 (403)
Q Consensus 81 ~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~~~d~~~~~~~ 157 (403)
..+-+.+|..+.|+.|++.|++|+ ++.++||+......+ ..|. +|...+.++.|+|. ...+++++.| |+
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~--~~l~-gH~~~v~~~~fhP~~~~~~lat~s~D-----gt 242 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL--QTLR-GHTSRVGAAVFHPVDSDLNLATASAD-----GT 242 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCccee--EEEe-ccccceeeEEEccCCCccceeeeccC-----Cc
Confidence 345677899999999999999999 666999998877444 7787 89999999999997 6789999999 99
Q ss_pred EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (403)
Q Consensus 158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (403)
+++|++.+..++..+. |...|..++|+|+|++++ .|.+-++||++++..+...++|...+..++|.++|. +++
T Consensus 243 vklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS---L~~ 319 (459)
T KOG0272|consen 243 VKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS---LAA 319 (459)
T ss_pred eeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc---eee
Confidence 9999999999999999 999999999999999999 599999999999998888899999999999999997 555
Q ss_pred eCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeC
Q 015650 234 PGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312 (403)
Q Consensus 234 ~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s 312 (403)
+|+.|..-+|||++++. +..+.+|..+|.+++|+|+|..||+|+.|++ ++|||++..+.+.++.. |.+-|+.+.|+
T Consensus 320 tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r~~ly~ipA--H~nlVS~Vk~~ 396 (459)
T KOG0272|consen 320 TGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMRSELYTIPA--HSNLVSQVKYS 396 (459)
T ss_pred ccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeecccccceeccc--ccchhhheEec
Confidence 67799999999999954 6678899999999999999999999999999 99999999999888886 78999999999
Q ss_pred C-CCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccC
Q 015650 313 S-NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQ 391 (403)
Q Consensus 313 ~-d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d 391 (403)
| .|.+|++++.|++++||.-.+..+ +..+.+|++.|.+|..++|
T Consensus 397 p~~g~fL~TasyD~t~kiWs~~~~~~-----------------------------------~ksLaGHe~kV~s~Dis~d 441 (459)
T KOG0272|consen 397 PQEGYFLVTASYDNTVKIWSTRTWSP-----------------------------------LKSLAGHEGKVISLDISPD 441 (459)
T ss_pred ccCCeEEEEcccCcceeeecCCCccc-----------------------------------chhhcCCccceEEEEeccC
Confidence 8 778999999999999999998875 3447889999999999999
Q ss_pred CCEEEEEccCCC
Q 015650 392 KNTVVILGMDGR 403 (403)
Q Consensus 392 ~~~l~~~~~dG~ 403 (403)
++++++++.|.|
T Consensus 442 ~~~i~t~s~DRT 453 (459)
T KOG0272|consen 442 SQAIATSSFDRT 453 (459)
T ss_pred CceEEEeccCce
Confidence 999999999975
No 3
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=3.5e-39 Score=260.87 Aligned_cols=305 Identities=60% Similarity=1.009 Sum_probs=275.7
Q ss_pred CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC
Q 015650 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (403)
Q Consensus 87 ~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~ 166 (403)
...+++|+.|...+++|.+.|++||++++.++...+.+. .....++.|.|..+.++++.|+..|+|+++.|.|||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~-~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFI-DGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccc-cCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345599999999999999999999999998776656665 3448899999999999999999999999999999998888
Q ss_pred ceeEEEecCCceeEEEEecCceEEEecCeEEEEEcC-CceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEE
Q 015650 167 RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH 245 (403)
Q Consensus 167 ~~~~~~~~~~~i~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d 245 (403)
+++.++.+..+|.++.+.++...++.++.|++|... +.+.++.++...++-..+++.+..+..++++.|..-|.|+|-|
T Consensus 86 ~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~d 165 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVD 165 (346)
T ss_pred cEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEE
Confidence 999999999999999999999999999999999998 5688888888888888999999999999999999999999999
Q ss_pred ccCCce---eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe
Q 015650 246 YASKRT---KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS 322 (403)
Q Consensus 246 ~~~~~~---~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~ 322 (403)
+..... ..+.+|...|.|++++-+|.++|++|..|+.|||||..+|+++.+++.+.....|.+|+|||++.+|+++|
T Consensus 166 L~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS 245 (346)
T KOG2111|consen 166 LASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS 245 (346)
T ss_pred hhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc
Confidence 988555 78999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650 323 DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG 402 (403)
Q Consensus 323 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG 402 (403)
+.|+|+||.++....... ..+++.+...++|+|+.+.|++.++++++++...++|..+.+.++..+.||
T Consensus 246 dKgTlHiF~l~~~~~~~~-----------~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dg 314 (346)
T KOG2111|consen 246 DKGTLHIFSLRDTENTED-----------ESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADG 314 (346)
T ss_pred CCCeEEEEEeecCCCCcc-----------ccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCC
Confidence 999999999998664222 115555556799999999999999999999999999999999999999999
Q ss_pred C
Q 015650 403 R 403 (403)
Q Consensus 403 ~ 403 (403)
+
T Consensus 315 s 315 (346)
T KOG2111|consen 315 S 315 (346)
T ss_pred c
Confidence 6
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.9e-39 Score=256.43 Aligned_cols=279 Identities=15% Similarity=0.136 Sum_probs=245.8
Q ss_pred ccccCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650 78 ESTSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (403)
Q Consensus 78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (403)
.+++.+|.+.|.++.|++|.++|++++.+ .+.|||.-+..+.....+ ....|..++|+|.+.++++++-| +
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl---~s~WVMtCA~sPSg~~VAcGGLd-----N 119 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL---PSSWVMTCAYSPSGNFVACGGLD-----N 119 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec---CceeEEEEEECCCCCeEEecCcC-----c
Confidence 48899999999999999999999999955 499999877666643333 67899999999999999999999 9
Q ss_pred eEEEEECCCC------ceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650 157 KVMIWDDHQS------RCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (403)
Q Consensus 157 ~i~iwd~~~~------~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (403)
...||++.+. +..+++. |.+.+.++.|.+|+.++. .|.+..+||+++++.+..|.+|.+.|..+.++|...
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG 199 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC
Confidence 9999999855 3344566 999999999999999988 588999999999999999999999999999999433
Q ss_pred eEEEEeeCCccCeEEEEEccCC-ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccE
Q 015650 228 SLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI 306 (403)
Q Consensus 228 ~~~~~~~g~~d~~i~v~d~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v 306 (403)
+. +++ |+-|+..++||++.+ .++.+.+|+..|++++|.|+|.-+++|+.|++ .++||++..+.+..+.......+|
T Consensus 200 nt-FvS-g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 200 NT-FVS-GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred Ce-EEe-cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcEEeeeccCcccCCc
Confidence 33 343 558999999999984 56779999999999999999999999999999 999999999999888855455689
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEE
Q 015650 307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV 386 (403)
Q Consensus 307 ~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (403)
++++||..|++|++|..|.++.+||.-.++. +..+.+|+.+|+++
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~-----------------------------------vg~L~GHeNRvScl 321 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGER-----------------------------------VGVLAGHENRVSCL 321 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccccce-----------------------------------EEEeeccCCeeEEE
Confidence 9999999999999999999999999988874 44578999999999
Q ss_pred EeccCCCEEEEEccCC
Q 015650 387 AFGHQKNTVVILGMDG 402 (403)
Q Consensus 387 ~fs~d~~~l~~~~~dG 402 (403)
..+|||..|++|+.|.
T Consensus 322 ~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 322 GVSPDGMAVATGSWDS 337 (343)
T ss_pred EECCCCcEEEecchhH
Confidence 9999999999999884
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-38 Score=251.55 Aligned_cols=289 Identities=13% Similarity=0.161 Sum_probs=236.1
Q ss_pred CCCccccCCCCCCeEEEEEcCCC-CEEEEEc-CCcEEEEEcCCCeeE---EEEecccCcceeEEEEeeeCCeEEEeeCCC
Q 015650 75 SPAESTSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREI---FRRDFERGGGIGVVEMLFRCNILALVGGGP 149 (403)
Q Consensus 75 ~~~~~~~~~~~~~i~~i~~s~d~-~~l~~~~-~~~i~iw~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~ 149 (403)
.....++.+|++.|+.++..+.+ ..|+.++ |..+.+|++...... ..+.+. +|...|..+..++++.+.++++.
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee-ccceEecceEEccCCceEEeccc
Confidence 34457889999999999998875 5666666 556999998654332 357787 79999999999999999999999
Q ss_pred CCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeecc--CCCceeEEEe
Q 015650 150 DPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI--ANPKGLCAVS 223 (403)
Q Consensus 150 d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~ 223 (403)
| +.+++||+.+++..+.|. |...|.+++|++|.+.++ -|.+|++|+... .+..++... .+.|.+++|+
T Consensus 84 D-----~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfs 157 (315)
T KOG0279|consen 84 D-----GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFS 157 (315)
T ss_pred c-----ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEc
Confidence 9 999999999999999998 999999999999999988 499999999764 444444333 7889999999
Q ss_pred eCCCeEEEEeeCCccCeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCC
Q 015650 224 QGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD 302 (403)
Q Consensus 224 ~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~ 302 (403)
|.....+++.++ .|++|++||+++.++ ..+.+|.+.++.+++||||.++++|+.||. +.+||++.++.+..+. +
T Consensus 158 P~~~~p~Ivs~s-~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~~k~lysl~---a 232 (315)
T KOG0279|consen 158 PNESNPIIVSAS-WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNEGKNLYSLE---A 232 (315)
T ss_pred CCCCCcEEEEcc-CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCce-EEEEEccCCceeEecc---C
Confidence 998777777644 999999999999655 457799999999999999999999999999 9999999999998888 6
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCC
Q 015650 303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGS 382 (403)
Q Consensus 303 ~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (403)
...|.+++|+|+.-+|+.+. +..|+|||++++..+..+..... + . ..+..+..
T Consensus 233 ~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~-------------g------------~-s~~~~~~~ 285 (315)
T KOG0279|consen 233 FDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGI-------------G------------P-SSKAGDPI 285 (315)
T ss_pred CCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccc-------------c------------c-ccccCCcE
Confidence 78999999999876666654 55699999999986554431100 0 0 01111223
Q ss_pred ceEEEeccCCCEEEEEccCC
Q 015650 383 PYIVAFGHQKNTVVILGMDG 402 (403)
Q Consensus 383 ~~~~~fs~d~~~l~~~~~dG 402 (403)
...+||++||++|+.|-.||
T Consensus 286 clslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 286 CLSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred EEEEEEcCCCcEEEeeecCC
Confidence 45589999999999999887
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-39 Score=271.30 Aligned_cols=245 Identities=18% Similarity=0.151 Sum_probs=222.7
Q ss_pred CCCCCccccCCCCCCeEEEEEcCC--CCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCC
Q 015650 73 LPSPAESTSSSPPPTLLHISFNQD--HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP 149 (403)
Q Consensus 73 ~~~~~~~~~~~~~~~i~~i~~s~d--~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~ 149 (403)
+......++.+|.+.|.++.|+|. +..||+++ |+.+++|++++...+ ..+. +|...|..++|+|+|.+|++++.
T Consensus 205 ~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l--~~l~-gH~~RVs~VafHPsG~~L~Tasf 281 (459)
T KOG0272|consen 205 PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL--QDLE-GHLARVSRVAFHPSGKFLGTASF 281 (459)
T ss_pred CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch--hhhh-cchhhheeeeecCCCceeeeccc
Confidence 334556789999999999999997 56889988 666999999876655 7787 89999999999999999999999
Q ss_pred CCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeC
Q 015650 150 DPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQG 225 (403)
Q Consensus 150 d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (403)
| .+-++||+.++..+...+ |...|.+++|++||.+++ .|..-+|||+++|+++..+.+|...|..+.|+|+
T Consensus 282 D-----~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPN 356 (459)
T KOG0272|consen 282 D-----STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPN 356 (459)
T ss_pred c-----cchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCC
Confidence 9 999999999998877777 999999999999999999 4889999999999999999999999999999998
Q ss_pred CCeEEEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc
Q 015650 226 VGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR 303 (403)
Q Consensus 226 ~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~ 303 (403)
|- .+++ |+.|++++|||++. ..+.++.+|..-|+.++|+| .|.+|++++.|++ ++||...+..+++.+.+ |.
T Consensus 357 Gy--~lAT-gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~~~~~ksLaG--He 430 (459)
T KOG0272|consen 357 GY--HLAT-GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRTWSPLKSLAG--HE 430 (459)
T ss_pred ce--EEee-cCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCCcccchhhcC--Cc
Confidence 75 3454 67999999999998 55678899999999999999 7899999999999 99999999999999997 78
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650 304 AEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (403)
Q Consensus 304 ~~v~~l~~s~d~~~l~s~~~dg~v~iwd 331 (403)
+.|.++.+++|+++|++++.|.++++|.
T Consensus 431 ~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 431 GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999995
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.9e-37 Score=240.13 Aligned_cols=260 Identities=22% Similarity=0.282 Sum_probs=219.5
Q ss_pred CCCCCCCccccCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCC
Q 015650 71 MPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150 (403)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d 150 (403)
+.....-..+.....+.|+.+.+.||++.||+++...||+||+.+.+.....+++ +|...|.++.|..++..++++++|
T Consensus 26 qa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e-~h~kNVtaVgF~~dgrWMyTgseD 104 (311)
T KOG0315|consen 26 QALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFE-GHTKNVTAVGFQCDGRWMYTGSED 104 (311)
T ss_pred ehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEe-ccCCceEEEEEeecCeEEEecCCC
Confidence 3333344455666678899999999999999999999999999988876668887 899999999999999999999999
Q ss_pred CCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEe-eccCCCceeEEEeeCC
Q 015650 151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGV 226 (403)
Q Consensus 151 ~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~ 226 (403)
|+++|||++...+.+.+++..+|+++..+|+...++ -+|.|++||+....+..++ ......+..+.+.|++
T Consensus 105 -----gt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg 179 (311)
T KOG0315|consen 105 -----GTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG 179 (311)
T ss_pred -----ceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC
Confidence 999999999988888899999999999999866555 3789999999987665554 3445678889999998
Q ss_pred CeEEEEeeCCccCeEEEEEccCC-------ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC-cEEEEEe
Q 015650 227 GSLVLVCPGLQKGQVRVEHYASK-------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVR 298 (403)
Q Consensus 227 ~~~~~~~~g~~d~~i~v~d~~~~-------~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~ 298 (403)
..+.. ....|..++|++-+. .+..++.|.+.+..+.+|||+++||+++.|.+ ++||+.++. +....+.
T Consensus 180 sml~a---~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt-v~iwn~~~~~kle~~l~ 255 (311)
T KOG0315|consen 180 SMLAA---ANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT-VKIWNTDDFFKLELVLT 255 (311)
T ss_pred cEEEE---ecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce-EEEEecCCceeeEEEee
Confidence 85432 347899999998763 23557899999999999999999999999999 999999887 4444555
Q ss_pred cCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCC
Q 015650 299 RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE 342 (403)
Q Consensus 299 ~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 342 (403)
+ |...++..+||.||+||++++.|+.+++|++..++.+..+.
T Consensus 256 g--h~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 256 G--HQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred c--CCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence 4 77899999999999999999999999999999999644443
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-37 Score=256.46 Aligned_cols=248 Identities=17% Similarity=0.243 Sum_probs=212.8
Q ss_pred CCCCCCCccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC-----CeEEE
Q 015650 71 MPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-----NILAL 144 (403)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~ 144 (403)
+.....+..+..+|..-|.|++|+|||+.||+|+ ++.|++||..++++.- +.|. +|...|++++|.| ....+
T Consensus 143 D~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g-~~l~-gH~K~It~Lawep~hl~p~~r~l 220 (480)
T KOG0271|consen 143 DLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG-RALR-GHKKWITALAWEPLHLVPPCRRL 220 (480)
T ss_pred ccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc-cccc-CcccceeEEeecccccCCCccce
Confidence 3444455578899999999999999999999999 5559999998887653 6676 8999999999965 56789
Q ss_pred eeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeE-
Q 015650 145 VGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLC- 220 (403)
Q Consensus 145 ~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~- 220 (403)
++++.| |.++|||+..++++..+. |..+|+|+.|--+|.+.. -|++|++|+...|++.+++++|...|+.+
T Consensus 221 as~skD-----g~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la 295 (480)
T KOG0271|consen 221 ASSSKD-----GSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA 295 (480)
T ss_pred ecccCC-----CCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeee
Confidence 999999 999999999999999998 999999999988887666 49999999988887777777666655443
Q ss_pred ------------------------------------------------------------------------------EE
Q 015650 221 ------------------------------------------------------------------------------AV 222 (403)
Q Consensus 221 ------------------------------------------------------------------------------~~ 222 (403)
.|
T Consensus 296 lsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~f 375 (480)
T KOG0271|consen 296 LSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSF 375 (480)
T ss_pred ccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEE
Confidence 55
Q ss_pred eeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC
Q 015650 223 SQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA 301 (403)
Q Consensus 223 ~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~ 301 (403)
+||+. ++++ ++.|..|++||.++++ +..+.+|-..|+.++|+.|.++|++|+.|.+ +++||+++.++...+.+
T Consensus 376 SPd~r--~IAS-aSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsT-LKvw~V~tkKl~~DLpG-- 449 (480)
T KOG0271|consen 376 SPDGR--YIAS-ASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDST-LKVWDVRTKKLKQDLPG-- 449 (480)
T ss_pred CCCcc--EEEE-eecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCce-EEEEEeeeeeecccCCC--
Confidence 55544 5555 4588999999998865 5678899999999999999999999999999 99999999999888886
Q ss_pred CcccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650 302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (403)
Q Consensus 302 ~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd 331 (403)
|...|.++.|+|||+.+++|+.|..+++|.
T Consensus 450 h~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 450 HADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceEEEEEecCCCceeecCCCceEEEeec
Confidence 778999999999999999999999999995
No 9
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.2e-36 Score=245.20 Aligned_cols=277 Identities=17% Similarity=0.229 Sum_probs=241.7
Q ss_pred CccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650 77 AESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (403)
Q Consensus 77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (403)
....+.+|...|+.+-|+|+-.++++++++. |++||..+++. +..++ +|...+.++.|+..+.++++++.|
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~Lr-GHt~sv~di~~~a~Gk~l~tcSsD----- 171 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSLR-GHTDSVFDISFDASGKYLATCSSD----- 171 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhhhh-ccccceeEEEEecCccEEEecCCc-----
Confidence 3445677999999999999999999998555 99999998876 48887 898899999999999999999998
Q ss_pred ceEEEEECCC-CceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650 156 NKVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (403)
Q Consensus 156 ~~i~iwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (403)
-.+++||..+ .++++.+. |+..|.++.|-|.|.+++ -|.+|++|++.++.+++++.+|...+..+.++.|+. +
T Consensus 172 l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt--i 249 (406)
T KOG0295|consen 172 LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT--I 249 (406)
T ss_pred cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee--E
Confidence 7799999877 45666655 899999999999998888 399999999999999999999999999888877764 5
Q ss_pred EEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCC---------------CCEEEEEeCCCcEEEEEEcCCCcEE
Q 015650 231 LVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD---------------GQLLATSSTKGTLVRIFNTLDGTLL 294 (403)
Q Consensus 231 ~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~---------------g~~l~s~~~dg~~i~iwd~~~~~~~ 294 (403)
+++ ++.|.++++|-+.++. ...+..|+.+|.|++|.|. +.++.+++.|++ |++||+.++.++
T Consensus 250 ~As-~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~tg~cL 327 (406)
T KOG0295|consen 250 IAS-CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVSTGMCL 327 (406)
T ss_pred EEe-cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EEEEeccCCeEE
Confidence 665 5699999999999864 4567899999999999873 359999999999 999999999999
Q ss_pred EEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeE
Q 015650 295 QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA 374 (403)
Q Consensus 295 ~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (403)
.++.+ |.+.|.+++|+|.|+||+++.+|++|++||+++.+.+..
T Consensus 328 ~tL~g--hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~---------------------------------- 371 (406)
T KOG0295|consen 328 FTLVG--HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT---------------------------------- 371 (406)
T ss_pred EEEec--ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec----------------------------------
Confidence 99997 789999999999999999999999999999999986433
Q ss_pred EEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650 375 QFRLVEGSPYIVAFGHQKNTVVILGMDG 402 (403)
Q Consensus 375 ~~~~~~~~~~~~~fs~d~~~l~~~~~dG 402 (403)
+..|+.-++++.|+.+..++++|+-|-
T Consensus 372 -~~ah~hfvt~lDfh~~~p~VvTGsVdq 398 (406)
T KOG0295|consen 372 -LEAHEHFVTSLDFHKTAPYVVTGSVDQ 398 (406)
T ss_pred -cCCCcceeEEEecCCCCceEEeccccc
Confidence 345677788899999999999998774
No 10
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.3e-35 Score=236.82 Aligned_cols=279 Identities=17% Similarity=0.200 Sum_probs=236.3
Q ss_pred ccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (403)
Q Consensus 78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (403)
...+.+|++.|+.+.|+|+|.+||+|+ |..|.+|++....+.+ ..+. +|...|..+.|..++..+++++.| .
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~-~~lk-gHsgAVM~l~~~~d~s~i~S~gtD-----k 112 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF-WVLK-GHSGAVMELHGMRDGSHILSCGTD-----K 112 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce-eeec-cccceeEeeeeccCCCEEEEecCC-----c
Confidence 356789999999999999999999998 6669999975444333 4454 899999999999999999999999 9
Q ss_pred eEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (403)
Q Consensus 157 ~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (403)
+|+.||+++|+.++.++ |..-|+.+.-..-|..++ -|+++++||+++.+.+++++ ..-++..+.|...+++.+
T Consensus 113 ~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~- 190 (338)
T KOG0265|consen 113 TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVI- 190 (338)
T ss_pred eEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEeccccccee-
Confidence 99999999999999999 888899888666666666 38999999999988888774 245567788887777643
Q ss_pred EeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC----CcEEEEEecCCCcc--
Q 015650 232 VCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD----GTLLQEVRRGADRA-- 304 (403)
Q Consensus 232 ~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~----~~~~~~~~~~~~~~-- 304 (403)
+ |.-|+.|++||++... ...+.+|...|+.+..+|+|.++.+-+.|.+ +++||++- .+++..+.++.|.-
T Consensus 191 -s-ggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~~R~v~if~g~~hnfek 267 (338)
T KOG0265|consen 191 -S-GGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPSQRCVKIFQGHIHNFEK 267 (338)
T ss_pred -e-ccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCCCceEEEeecchhhhhh
Confidence 3 3489999999998754 5678999999999999999999999999999 99999874 45688888766654
Q ss_pred cEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCce
Q 015650 305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384 (403)
Q Consensus 305 ~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (403)
....++|+|++..+.+|+.|..+++||.....- +..+.+|.+.|+
T Consensus 268 nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~-----------------------------------lyklpGh~gsvn 312 (338)
T KOG0265|consen 268 NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRI-----------------------------------LYKLPGHYGSVN 312 (338)
T ss_pred hcceeeccCCCCccccccccceEEEeecccccE-----------------------------------EEEcCCcceeEE
Confidence 456779999999999999999999999988662 344778889999
Q ss_pred EEEeccCCCEEEEEccCCC
Q 015650 385 IVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 385 ~~~fs~d~~~l~~~~~dG~ 403 (403)
.+.|+|....|.+++.|.+
T Consensus 313 ~~~Fhp~e~iils~~sdk~ 331 (338)
T KOG0265|consen 313 EVDFHPTEPIILSCSSDKT 331 (338)
T ss_pred EeeecCCCcEEEEeccCce
Confidence 9999999999999999864
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.6e-35 Score=247.81 Aligned_cols=268 Identities=18% Similarity=0.283 Sum_probs=234.1
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650 85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (403)
Q Consensus 85 ~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~ 163 (403)
...|++++|+.+|.+||+|..+| ++||+..... . .++. .|..+|.++.|+..+.++++++-| +++.+||.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~--~tl~-~HkgPI~slKWnk~G~yilS~~vD-----~ttilwd~ 305 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL-I--STLG-QHKGPIFSLKWNKKGTYILSGGVD-----GTTILWDA 305 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchh-h--hhhh-ccCCceEEEEEcCCCCEEEeccCC-----ccEEEEec
Confidence 35799999999999999999666 9999976432 2 5564 799999999999999999999999 99999999
Q ss_pred CCCceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCe
Q 015650 164 HQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240 (403)
Q Consensus 164 ~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 240 (403)
.+++..+.+. |..+-.++.|-.+..+.. .|+.|+++.+....++.++.+|.+.|..+.|.|.+. ++++ .+.|++
T Consensus 306 ~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~--LLaS-~SdD~T 382 (524)
T KOG0273|consen 306 HTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS--LLAS-CSDDGT 382 (524)
T ss_pred cCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc--eEEE-ecCCCe
Confidence 9999999999 666668899998888888 699999999998999999999999999999998876 4444 458999
Q ss_pred EEEEEccC-CceeEEeecCCceEEEEEcCCC---------CEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEE
Q 015650 241 VRVEHYAS-KRTKFIMAHDSRIACFALTQDG---------QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (403)
Q Consensus 241 i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g---------~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 310 (403)
++||.... .....+.+|...|..+.|+|.| ..|++++.|++ |++||+..+.++.+|.. |..+|.+++
T Consensus 383 lkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst-V~lwdv~~gv~i~~f~k--H~~pVysva 459 (524)
T KOG0273|consen 383 LKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST-VKLWDVESGVPIHTLMK--HQEPVYSVA 459 (524)
T ss_pred eEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe-EEEEEccCCceeEeecc--CCCceEEEE
Confidence 99999665 6677789999999999999954 58899999999 99999999999999975 789999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEecc
Q 015650 311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH 390 (403)
Q Consensus 311 ~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~ 390 (403)
|+|+|++||+|+.||.|+||++++++..+. ....+.|..|+|+.
T Consensus 460 fS~~g~ylAsGs~dg~V~iws~~~~~l~~s------------------------------------~~~~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 460 FSPNGRYLASGSLDGCVHIWSTKTGKLVKS------------------------------------YQGTGGIFELCWNA 503 (524)
T ss_pred ecCCCcEEEecCCCCeeEeccccchheeEe------------------------------------ecCCCeEEEEEEcC
Confidence 999999999999999999999999984222 12234588899999
Q ss_pred CCCEEEEEccCCC
Q 015650 391 QKNTVVILGMDGR 403 (403)
Q Consensus 391 d~~~l~~~~~dG~ 403 (403)
+|+.|.++-.||+
T Consensus 504 ~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 504 AGDKLGACASDGS 516 (524)
T ss_pred CCCEEEEEecCCC
Confidence 9999999988874
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=226.53 Aligned_cols=255 Identities=16% Similarity=0.229 Sum_probs=214.8
Q ss_pred CEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc--eeEEEe-
Q 015650 98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR--CIGELS- 173 (403)
Q Consensus 98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~--~~~~~~- 173 (403)
-+|++++ |.+||+|...++.+. ++++ +....|..+...++...|+.++. -.|++||+.++. ++.+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~--rTiq-h~dsqVNrLeiTpdk~~LAaa~~------qhvRlyD~~S~np~Pv~t~e~ 81 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICS--RTIQ-HPDSQVNRLEITPDKKDLAAAGN------QHVRLYDLNSNNPNPVATFEG 81 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEE--EEEe-cCccceeeEEEcCCcchhhhccC------CeeEEEEccCCCCCceeEEec
Confidence 4677777 778999999888766 7776 66778999999999999999887 589999999875 588888
Q ss_pred cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc
Q 015650 174 FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR 250 (403)
Q Consensus 174 ~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~ 250 (403)
|...|..+.|..+|++++ .||+++|||++...+.+.++ +..++..+.++|+...++. |..+|.|++||+....
T Consensus 82 h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis---~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 82 HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELIS---GDQSGNIRVWDLGENS 157 (311)
T ss_pred cCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEe---ecCCCcEEEEEccCCc
Confidence 889999999999999999 49999999999977666664 5689999999998776543 4689999999999864
Q ss_pred e--eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC------cEEEEEecCCCcccEEEEEeCCCCCEEEEEe
Q 015650 251 T--KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSS 322 (403)
Q Consensus 251 ~--~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~------~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~ 322 (403)
. ..+......|.++...|||.+|+.+...|+ .++|++-+. +++.+++. |.+.+..+.+|||+++||+++
T Consensus 158 c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~-cyvW~l~~~~~~s~l~P~~k~~a--h~~~il~C~lSPd~k~lat~s 234 (311)
T KOG0315|consen 158 CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN-CYVWRLLNHQTASELEPVHKFQA--HNGHILRCLLSPDVKYLATCS 234 (311)
T ss_pred cccccCCCCCcceeeEEEcCCCcEEEEecCCcc-EEEEEccCCCccccceEhhheec--ccceEEEEEECCCCcEEEeec
Confidence 3 233445678999999999999999999999 999998764 34445554 788999999999999999999
Q ss_pred CCCcEEEEEeecC-CCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccC
Q 015650 323 DKGTVHVFNLKVN-SGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD 401 (403)
Q Consensus 323 ~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~d 401 (403)
.|.+++||++++. +. -.++++|...+..++||.||.||++|+.|
T Consensus 235 sdktv~iwn~~~~~kl-----------------------------------e~~l~gh~rWvWdc~FS~dg~YlvTassd 279 (311)
T KOG0315|consen 235 SDKTVKIWNTDDFFKL-----------------------------------ELVLTGHQRWVWDCAFSADGEYLVTASSD 279 (311)
T ss_pred CCceEEEEecCCceee-----------------------------------EEEeecCCceEEeeeeccCccEEEecCCC
Confidence 9999999999986 21 22367777899999999999999999999
Q ss_pred CC
Q 015650 402 GR 403 (403)
Q Consensus 402 G~ 403 (403)
+.
T Consensus 280 ~~ 281 (311)
T KOG0315|consen 280 HT 281 (311)
T ss_pred Cc
Confidence 74
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.3e-35 Score=231.05 Aligned_cols=244 Identities=14% Similarity=0.230 Sum_probs=208.3
Q ss_pred ccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (403)
Q Consensus 78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (403)
++-+.+|+..|..+..++||.+.++++ |+.+++||+.+++.. +.|. +|...|.+++|++|...++++++| .
T Consensus 56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t--~~f~-GH~~dVlsva~s~dn~qivSGSrD-----k 127 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGEST--RRFV-GHTKDVLSVAFSTDNRQIVSGSRD-----K 127 (315)
T ss_pred eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEE--EEEE-ecCCceEEEEecCCCceeecCCCc-----c
Confidence 466889999999999999999999998 667999999988655 6676 899999999999999999999999 9
Q ss_pred eEEEEECCCCceeEEEe--cCCceeEEEEecC--ceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650 157 KVMIWDDHQSRCIGELS--FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (403)
Q Consensus 157 ~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~--~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (403)
+|++|++.......... +.+.|.++.|+|+ ..+++ .|++|++||+++.+....+.+|.+.+..++++|||.
T Consensus 128 Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs-- 205 (315)
T KOG0279|consen 128 TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS-- 205 (315)
T ss_pred eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC--
Confidence 99999976554444333 3788999999998 55666 599999999999999999999999999999999997
Q ss_pred EEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC-------C
Q 015650 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-------D 302 (403)
Q Consensus 230 ~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-------~ 302 (403)
+.+ +|..||.+.+||++.++......|...|.+++|+|+.-.|+.+... . |+|||+.++.++..++... .
T Consensus 206 lca-sGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~-s-IkIwdl~~~~~v~~l~~d~~g~s~~~~ 282 (315)
T KOG0279|consen 206 LCA-SGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATAT-S-IKIWDLESKAVVEELKLDGIGPSSKAG 282 (315)
T ss_pred EEe-cCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCC-c-eEEEeccchhhhhhccccccccccccC
Confidence 344 4679999999999998887777899999999999998777766554 4 9999999998887765421 1
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650 303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (403)
Q Consensus 303 ~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~ 334 (403)
.....+++|++||+.|++|..|+.|++|.+..
T Consensus 283 ~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 283 DPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 22467899999999999999999999999864
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.4e-35 Score=265.14 Aligned_cols=246 Identities=17% Similarity=0.257 Sum_probs=218.9
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCee-----------------------------EEEEecccCcce
Q 015650 81 SSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFRE-----------------------------IFRRDFERGGGI 130 (403)
Q Consensus 81 ~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~-----------------------------~~~~~~~~~~~~ 130 (403)
+..-...++|..|++|+++||.|..+ .|++|.+.+.+. ...+.+. +|..
T Consensus 374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~-GH~G 452 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY-GHSG 452 (707)
T ss_pred EEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee-cCCC
Confidence 34445679999999999999999854 599999874210 0112343 8999
Q ss_pred eEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCcee
Q 015650 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKL 206 (403)
Q Consensus 131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~ 206 (403)
+|....|+|+..+|++++.| +++++|.+.+..++..++ |..+|..+.|+|-|.+++ .|++.++|......+
T Consensus 453 PVyg~sFsPd~rfLlScSED-----~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSED-----SSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred ceeeeeecccccceeeccCC-----cceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc
Confidence 99999999999999999999 999999999999999999 999999999999999999 399999999998999
Q ss_pred eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC-ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 015650 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI 285 (403)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~i 285 (403)
++.+.+|...+.++.|+|+.. |+++ |+.|.++++||..++ .++.+.+|.++|.+++|+|+|++|++|+.|+. |++
T Consensus 528 lRifaghlsDV~cv~FHPNs~--Y~aT-GSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~i 603 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSN--YVAT-GSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKI 603 (707)
T ss_pred hhhhcccccccceEEECCccc--cccc-CCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEE
Confidence 999999999999999999987 5665 779999999999885 46778899999999999999999999999999 999
Q ss_pred EEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650 286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (403)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~ 338 (403)
||+.+++.+..+.+ |.+.|.+|.|+.||..||+|+.|.+|++||+......
T Consensus 604 WDl~~~~~v~~l~~--Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 604 WDLANGSLVKQLKG--HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred EEcCCCcchhhhhc--ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 99999999999997 6899999999999999999999999999999877653
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.8e-35 Score=249.65 Aligned_cols=274 Identities=18% Similarity=0.277 Sum_probs=229.0
Q ss_pred CCCCCCeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCC------eeEEEEecc-----cCcceeEEEEeeeCCeEEEeeCC
Q 015650 82 SSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPF------REIFRRDFE-----RGGGIGVVEMLFRCNILALVGGG 148 (403)
Q Consensus 82 ~~~~~~i~~i~~s~d~~-~l~~~~-~~~i~iw~~~~~------~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~s~~ 148 (403)
..|+..|.+.+|+|-.. +|++|+ +-+.++|++... +..+...+. ...+..|++++|+.+|..|+++.
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 34999999999999776 888887 566999998641 111111111 12346899999999999999999
Q ss_pred CCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEee
Q 015650 149 PDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ 224 (403)
Q Consensus 149 ~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (403)
.+ |.++||+ ..|.++.++. |.++|.++.|+.+|.+++ .|+++.+||..+++..+.+..|..+.-.+.|-.
T Consensus 255 ~~-----G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~ 328 (524)
T KOG0273|consen 255 ED-----GEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS 328 (524)
T ss_pred cC-----cEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec
Confidence 99 9999999 5677788887 999999999999999988 599999999999999999988777644455544
Q ss_pred CCCeEEEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc
Q 015650 225 GVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR 303 (403)
Q Consensus 225 ~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~ 303 (403)
+.. ++++ +.|+.|+|+.+.. .+..++.+|.+.|.+|.|+|.|.+|++++.|++ ++||+.........+.. |.
T Consensus 329 ~~~---F~ts-~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T-lkiWs~~~~~~~~~l~~--Hs 401 (524)
T KOG0273|consen 329 NDE---FATS-STDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT-LKIWSMGQSNSVHDLQA--HS 401 (524)
T ss_pred Cce---Eeec-CCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe-eEeeecCCCcchhhhhh--hc
Confidence 432 4443 4899999999887 567788899999999999999999999999999 99999998888888886 77
Q ss_pred ccEEEEEeCCCCC---------EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeE
Q 015650 304 AEIYSLAFSSNAQ---------WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA 374 (403)
Q Consensus 304 ~~v~~l~~s~d~~---------~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (403)
..|..+.|+|+|. .|++++.|++|++||+..+.+ +.
T Consensus 402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~-----------------------------------i~ 446 (524)
T KOG0273|consen 402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP-----------------------------------IH 446 (524)
T ss_pred cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce-----------------------------------eE
Confidence 8999999999764 799999999999999999985 34
Q ss_pred EEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 375 QFRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 375 ~~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
.+..|..+|+.|+|||+|++||+|+.||.
T Consensus 447 ~f~kH~~pVysvafS~~g~ylAsGs~dg~ 475 (524)
T KOG0273|consen 447 TLMKHQEPVYSVAFSPNGRYLASGSLDGC 475 (524)
T ss_pred eeccCCCceEEEEecCCCcEEEecCCCCe
Confidence 46677889999999999999999999984
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.9e-34 Score=254.02 Aligned_cols=292 Identities=15% Similarity=0.275 Sum_probs=230.8
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcCC--cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceE
Q 015650 81 SSSPPPTLLHISFNQDHGCFAAGTDH--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (403)
Q Consensus 81 ~~~~~~~i~~i~~s~d~~~l~~~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i 158 (403)
+.-....|..++|+..|.+||.|+.+ .+-||++....-+ ...+ +|...+.+++++||+..+++|++| |+|
T Consensus 303 LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV--lKQQ-gH~~~i~~l~YSpDgq~iaTG~eD-----gKV 374 (893)
T KOG0291|consen 303 LSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV--LKQQ-GHSDRITSLAYSPDGQLIATGAED-----GKV 374 (893)
T ss_pred eecccceeeEEEecccCCEEEEcCCccceEEEEEeecccee--eecc-ccccceeeEEECCCCcEEEeccCC-----CcE
Confidence 33345689999999999999999966 4999999876655 3344 799999999999999999999999 999
Q ss_pred EEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEee
Q 015650 159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (403)
Q Consensus 159 ~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (403)
+|||...|-++.+|. |...|+.+.|+..+..++ .||+|+.||+...+..+++.. ..++...++.-|..+.++. +
T Consensus 375 KvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-P~p~QfscvavD~sGelV~-A 452 (893)
T KOG0291|consen 375 KVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-PEPIQFSCVAVDPSGELVC-A 452 (893)
T ss_pred EEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-CCceeeeEEEEcCCCCEEE-e
Confidence 999999999999998 999999999999999888 599999999999999998864 4455554554443333444 4
Q ss_pred CCcc-CeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC-cEEEEEecCCCcccEEEEEe
Q 015650 235 GLQK-GQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAF 311 (403)
Q Consensus 235 g~~d-~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~ 311 (403)
|..| -.|.+|++.++++ ..+.+|+++|.+++|+|+|..|++++.|.+ |++||+-.. ....++. +...+..++|
T Consensus 453 G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s~~~vEtl~---i~sdvl~vsf 528 (893)
T KOG0291|consen 453 GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSSSGTVETLE---IRSDVLAVSF 528 (893)
T ss_pred eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeeccCceeeeEe---eccceeEEEE
Confidence 5444 4699999999765 557899999999999999999999999999 999998654 3445665 5578999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccC
Q 015650 312 SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQ 391 (403)
Q Consensus 312 s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d 391 (403)
+|||+.|++++-||.|.+||++.+.....+++.... .+.......-.++........+.++||+|
T Consensus 529 rPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~---------------~~gR~~~D~~ta~~sa~~K~Ftti~ySaD 593 (893)
T KOG0291|consen 529 RPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDL---------------SGGRKETDRITAENSAKGKTFTTICYSAD 593 (893)
T ss_pred cCCCCeEEEEEecceEEEEEhhhceeeccccchhhc---------------cccccccceeehhhcccCCceEEEEEcCC
Confidence 999999999999999999999998876666533210 00000011001112222357888999999
Q ss_pred CCEEEEEccC
Q 015650 392 KNTVVILGMD 401 (403)
Q Consensus 392 ~~~l~~~~~d 401 (403)
|++|++||..
T Consensus 594 G~~IlAgG~s 603 (893)
T KOG0291|consen 594 GKCILAGGES 603 (893)
T ss_pred CCEEEecCCc
Confidence 9999999864
No 17
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=9.5e-33 Score=241.32 Aligned_cols=276 Identities=21% Similarity=0.326 Sum_probs=233.0
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (403)
..+.+|.+.|++++|+|++++|++++ ++.|++|++.+.+.. ..+. .|...+..+.|.+++..+++++.+ |.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~l~~~~~~-----~~ 74 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--RTLK-GHTGPVRDVAASADGTYLASGSSD-----KT 74 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE--EEEe-cCCcceeEEEECCCCCEEEEEcCC-----Ce
Confidence 34568999999999999999999998 555999999876643 3443 577788899999998788888878 99
Q ss_pred EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE--e-cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (403)
Q Consensus 158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (403)
|++|++.+++.+..+. |...+.++.|++++.+++ . ++.|++||+++++....+..+...+..+.+++++. ++++
T Consensus 75 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~ 152 (289)
T cd00200 75 IRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT--FVAS 152 (289)
T ss_pred EEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC--EEEE
Confidence 9999999988888887 778999999999977776 3 89999999998888888888888899999999854 3343
Q ss_pred eCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeC
Q 015650 234 PGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312 (403)
Q Consensus 234 ~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s 312 (403)
+..++.|++||++. .....+..|...+.++.|+|+++.|++++.++. |++||+.+++.+..+.. |...+.++.|+
T Consensus 153 -~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~ 228 (289)
T cd00200 153 -SSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRG--HENGVNSVAFS 228 (289)
T ss_pred -EcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCCceecchhh--cCCceEEEEEc
Confidence 33689999999986 445667788889999999999999999999999 99999999988888854 66799999999
Q ss_pred CCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCC
Q 015650 313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK 392 (403)
Q Consensus 313 ~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~ 392 (403)
|++.++++++.||.|++|++.+++. ...+..+...+..++|++++
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~-----------------------------------~~~~~~~~~~i~~~~~~~~~ 273 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGEC-----------------------------------VQTLSGHTNSVTSLAWSPDG 273 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCcee-----------------------------------EEEccccCCcEEEEEECCCC
Confidence 9988998888899999999987663 22344566789999999999
Q ss_pred CEEEEEccCCC
Q 015650 393 NTVVILGMDGR 403 (403)
Q Consensus 393 ~~l~~~~~dG~ 403 (403)
+.|++++.||.
T Consensus 274 ~~l~~~~~d~~ 284 (289)
T cd00200 274 KRLASGSADGT 284 (289)
T ss_pred CEEEEecCCCe
Confidence 99999999984
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.7e-35 Score=246.73 Aligned_cols=270 Identities=13% Similarity=0.194 Sum_probs=227.5
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650 85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (403)
Q Consensus 85 ~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~ 163 (403)
...|..+.|.|+|+.|++|++.| +.+|+..... ++..++ .|...|.++.|+.++.++++++.+ |.|++|+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn--FEtilQ-aHDs~Vr~m~ws~~g~wmiSgD~g-----G~iKyWqp 167 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN--FETILQ-AHDSPVRTMKWSHNGTWMISGDKG-----GMIKYWQP 167 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee--HHHHhh-hhcccceeEEEccCCCEEEEcCCC-----ceEEeccc
Confidence 45799999999999999999777 9999964332 223344 799999999999999999999999 99999996
Q ss_pred CCCceeEEEe--cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCcc
Q 015650 164 HQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK 238 (403)
Q Consensus 164 ~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 238 (403)
.. ..++.+. |...|++++|+|+...++ .||+|+|||....+....+.+|.-.+.++.|+|... ++++ |+.|
T Consensus 168 nm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg--Lias-gskD 243 (464)
T KOG0284|consen 168 NM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG--LIAS-GSKD 243 (464)
T ss_pred ch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc--eeEE-ccCC
Confidence 54 4444554 569999999999654444 489999999998888888899999999999999765 4444 5689
Q ss_pred CeEEEEEccCC-ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCC-C
Q 015650 239 GQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA-Q 316 (403)
Q Consensus 239 ~~i~v~d~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~-~ 316 (403)
..|++||.+++ ++..+..|+..|..+.|+|++++|++++.|.. ++++|+++.+.++.+++ |...|+++.|+|-. .
T Consensus 244 nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~r~--Hkkdv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTYRG--HKKDVTSLTWHPLNES 320 (464)
T ss_pred ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHhhc--chhhheeecccccccc
Confidence 99999999985 56778899999999999999999999999999 99999998888888886 78899999999954 5
Q ss_pred EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEE
Q 015650 317 WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVV 396 (403)
Q Consensus 317 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~ 396 (403)
+|.+|+.||.|..|.+...+++..+. ..|+..|+.++|+|-|..|+
T Consensus 321 lftsgg~Dgsvvh~~v~~~~p~~~i~----------------------------------~AHd~~iwsl~~hPlGhil~ 366 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVVGLEEPLGEIP----------------------------------PAHDGEIWSLAYHPLGHILA 366 (464)
T ss_pred ceeeccCCCceEEEeccccccccCCC----------------------------------cccccceeeeeccccceeEe
Confidence 78899999999999999666543332 45677899999999999999
Q ss_pred EEccCCC
Q 015650 397 ILGMDGR 403 (403)
Q Consensus 397 ~~~~dG~ 403 (403)
+|+.|.+
T Consensus 367 tgsnd~t 373 (464)
T KOG0284|consen 367 TGSNDRT 373 (464)
T ss_pred ecCCCcc
Confidence 9998864
No 19
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-33 Score=218.86 Aligned_cols=274 Identities=14% Similarity=0.209 Sum_probs=228.6
Q ss_pred CccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650 77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (403)
Q Consensus 77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (403)
...++..+.++|.++.|+-||+|.++++ |++|++|+...+.. .+++. +|...|...+.+.|...+++++.|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l--iktYs-ghG~EVlD~~~s~Dnskf~s~GgD----- 80 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL--IKTYS-GHGHEVLDAALSSDNSKFASCGGD----- 80 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccce--eeeec-CCCceeeeccccccccccccCCCC-----
Confidence 3467788999999999999999977665 77899999765544 47887 899999999999999999999999
Q ss_pred ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCC--ceeeeEeeccCCCceeEEEeeCCCeE
Q 015650 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD--LKLLHQIETIANPKGLCAVSQGVGSL 229 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (403)
..+.+||+.+|+.++.+. |...|+.+.|+.+...++ .|.++++||.+. .++++.+....+.+..+.++.. .
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h---e 157 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH---E 157 (307)
T ss_pred ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc---E
Confidence 999999999999999999 999999999999999988 599999999986 5778888887888887777653 2
Q ss_pred EEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEE
Q 015650 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL 309 (403)
Q Consensus 230 ~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l 309 (403)
++ +|+.||+++.||++.+.... .-...+|+|++|++|++..+.++.|++ |++.|-.+|+++..++++.....=...
T Consensus 158 Iv--aGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~st-lrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 158 IV--AGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDST-LRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred EE--eeccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccce-eeecccchhHHHHHhcccccceeeeee
Confidence 33 47899999999999877543 234568999999999999999999999 999999999999999986555555667
Q ss_pred EeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCC-ceEEEe
Q 015650 310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGS-PYIVAF 388 (403)
Q Consensus 310 ~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f 388 (403)
+++....++++|++||.|++||+.....+ ..+..+... +..+++
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~-----------------------------------sk~~~~~~v~v~dl~~ 278 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDETQI-----------------------------------SKLSVVSTVIVTDLSC 278 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccceee-----------------------------------eeeccCCceeEEeeec
Confidence 78888889999999999999999988742 223344443 677888
Q ss_pred ccCCCEEEEEcc
Q 015650 389 GHQKNTVVILGM 400 (403)
Q Consensus 389 s~d~~~l~~~~~ 400 (403)
+|.-..|+++..
T Consensus 279 hp~~~~f~~A~~ 290 (307)
T KOG0316|consen 279 HPTMDDFITATG 290 (307)
T ss_pred ccCccceeEecC
Confidence 887766666654
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9e-33 Score=221.15 Aligned_cols=240 Identities=15% Similarity=0.198 Sum_probs=208.1
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCC--e--eEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCC
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPF--R--EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY 153 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~--~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~ 153 (403)
....-...-|..++|+|.|+++|+|+ |+...||++.+. + ....+.+. +|...+.++.|-.|..+ ++++.|
T Consensus 91 haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~-gHtgylScC~f~dD~~i-lT~SGD--- 165 (343)
T KOG0286|consen 91 HAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELA-GHTGYLSCCRFLDDNHI-LTGSGD--- 165 (343)
T ss_pred eEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeec-CccceeEEEEEcCCCce-EecCCC---
Confidence 44455667899999999999999998 777999999743 2 23345676 89999999999886654 455555
Q ss_pred CCceEEEEECCCCceeEEEe-cCCceeEEEEec-CceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650 154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (403)
Q Consensus 154 ~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (403)
.+..+||+++++.+..|. |.+.|.++.++| +++.++ .|+..++||++.+.+++.|.+|...|..++|.|++..
T Consensus 166 --~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~a 243 (343)
T KOG0286|consen 166 --MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDA 243 (343)
T ss_pred --ceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCe
Confidence 899999999999999999 999999999999 777777 5999999999999999999999999999999999874
Q ss_pred EEEEeeCCccCeEEEEEccCCceeEEeec---CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCccc
Q 015650 229 LVLVCPGLQKGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE 305 (403)
Q Consensus 229 ~~~~~~g~~d~~i~v~d~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~ 305 (403)
++ +|++|++.++||++..+...+..| ..+|++++||..|++|++|..|.+ +.+||.-.++.+..+.+ |++.
T Consensus 244 --fa-tGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~-c~vWDtlk~e~vg~L~G--HeNR 317 (343)
T KOG0286|consen 244 --FA-TGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT-CNVWDTLKGERVGVLAG--HENR 317 (343)
T ss_pred --ee-ecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCc-eeEeeccccceEEEeec--cCCe
Confidence 44 478999999999999655444444 457999999999999999999999 99999999999999986 8899
Q ss_pred EEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650 306 IYSLAFSSNAQWLAVSSDKGTVHVFN 331 (403)
Q Consensus 306 v~~l~~s~d~~~l~s~~~dg~v~iwd 331 (403)
|.++..+|||.-|++|+.|.+|+||.
T Consensus 318 vScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 318 VSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999994
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-32 Score=245.23 Aligned_cols=318 Identities=19% Similarity=0.252 Sum_probs=260.8
Q ss_pred CCCccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCC
Q 015650 75 SPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY 153 (403)
Q Consensus 75 ~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~ 153 (403)
....+.+.+|...|.++.|+.|.++|++|+ |-.++||.++..+......+. +|...|.+..|..+...+++.+.|
T Consensus 135 Fvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~-gHkd~VvacfF~~~~~~l~tvskd--- 210 (893)
T KOG0291|consen 135 FVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALN-GHKDYVVACFFGANSLDLYTVSKD--- 210 (893)
T ss_pred ceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEecc-CCCcceEEEEeccCcceEEEEecC---
Confidence 334478899999999999999999999998 555999999988876667776 899999999999999999999999
Q ss_pred CCceEEEEECCC-----------------------Cce-----e-EEE-e-----cCCceeEEEEecCceEEE---ecCe
Q 015650 154 PLNKVMIWDDHQ-----------------------SRC-----I-GEL-S-----FRSEVRSVKLRRDRIIVV---LEQK 195 (403)
Q Consensus 154 ~~~~i~iwd~~~-----------------------~~~-----~-~~~-~-----~~~~i~~~~~~~~~~~~~---~d~~ 195 (403)
|.+.+|.... ++. . ... + ....|++.+|++....++ ..|.
T Consensus 211 --G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~ 288 (893)
T KOG0291|consen 211 --GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGE 288 (893)
T ss_pred --ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCe
Confidence 9999998651 111 0 011 1 236789999999888887 5788
Q ss_pred EEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEE
Q 015650 196 IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLA 274 (403)
Q Consensus 196 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~ 274 (403)
..+|.+....+++.+.....++..++|+..|+.+.+.+ +.-|++.||++..... ...++|...+++++++|||+++|
T Consensus 289 f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~--~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~ia 366 (893)
T KOG0291|consen 289 FGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGC--SKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIA 366 (893)
T ss_pred eEEEecCCceEEEEeecccceeeEEEecccCCEEEEcC--CccceEEEEEeeccceeeeccccccceeeEEECCCCcEEE
Confidence 99999999999999988888999999999999655554 5678999999998654 45678999999999999999999
Q ss_pred EEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCC--CCCCc
Q 015650 275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTS--DPTLP 352 (403)
Q Consensus 275 s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~ 352 (403)
+|+.||. |+|||..++-|+.+|.. |.+.|+.+.|+..|+.|++.+-||+|+.||+....+.+++...... .+...
T Consensus 367 TG~eDgK-VKvWn~~SgfC~vTFte--Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscvav 443 (893)
T KOG0291|consen 367 TGAEDGK-VKVWNTQSGFCFVTFTE--HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAV 443 (893)
T ss_pred eccCCCc-EEEEeccCceEEEEecc--CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEE
Confidence 9999999 99999999999999996 7899999999999999999999999999999999998888744332 22223
Q ss_pred ccccc-cccccccceeeeeeeeEE------EEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 353 TSSLS-FIKGVLPKYFSSEWSVAQ------FRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 353 ~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
+.+.. +.++....+--..|++.+ +.+|+++|.+++|+|+++.|++|+.|.|
T Consensus 444 D~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT 501 (893)
T KOG0291|consen 444 DPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT 501 (893)
T ss_pred cCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce
Confidence 32222 223333333335566543 6789999999999999999999999975
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.4e-33 Score=257.00 Aligned_cols=274 Identities=17% Similarity=0.266 Sum_probs=232.0
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650 82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (403)
Q Consensus 82 ~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i 160 (403)
..+...|.++.|+++|+++++++ ++.+++|+....+....+.+. +|...|..++|++++.++++++.| ++|+|
T Consensus 156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~s~s~D-----~tiri 229 (456)
T KOG0266|consen 156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLLSGSDD-----KTLRI 229 (456)
T ss_pred ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccc-ccccceeeeEECCCCcEEEEecCC-----ceEEE
Confidence 33488999999999999999987 566999998655522335554 799999999999999999999999 99999
Q ss_pred EEC-CCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC
Q 015650 161 WDD-HQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (403)
Q Consensus 161 wd~-~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 235 (403)
||+ ..+..++++. |...|++++|+|++.+++ .|++|++||+++++++..+.+|...+..++|++++.. +++ +
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~--l~s-~ 306 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNL--LVS-A 306 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCE--EEE-c
Confidence 999 5558889998 999999999999997777 5999999999999999999999999999999999884 343 3
Q ss_pred CccCeEEEEEccCCce---eEEeecCCc--eEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc-ccEEEE
Q 015650 236 LQKGQVRVEHYASKRT---KFIMAHDSR--IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-AEIYSL 309 (403)
Q Consensus 236 ~~d~~i~v~d~~~~~~---~~~~~~~~~--i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~-~~v~~l 309 (403)
+.|+.|++||+.++.. ..+..+... ++++.|+|++.+|++++.|+. +++||+..++.+..+..+... ..+.+.
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-~~~w~l~~~~~~~~~~~~~~~~~~~~~~ 385 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-LKLWDLRSGKSVGTYTGHSNLVRCIFSP 385 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-EEEEEccCCcceeeecccCCcceeEecc
Confidence 5799999999999873 456665554 999999999999999999999 999999999999999875322 145566
Q ss_pred EeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEe-CCCceEEEe
Q 015650 310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLV-EGSPYIVAF 388 (403)
Q Consensus 310 ~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f 388 (403)
..++.+.++++|+.|+.|++|++.++.... .+.+| ...+..++|
T Consensus 386 ~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~-----------------------------------~l~~h~~~~~~~~~~ 430 (456)
T KOG0266|consen 386 TLSTGGKLIYSGSEDGSVYVWDSSSGGILQ-----------------------------------RLEGHSKAAVSDLSS 430 (456)
T ss_pred cccCCCCeEEEEeCCceEEEEeCCccchhh-----------------------------------hhcCCCCCceecccc
Confidence 678899999999999999999999977432 24555 567778899
Q ss_pred ccCCCEEEEEcc
Q 015650 389 GHQKNTVVILGM 400 (403)
Q Consensus 389 s~d~~~l~~~~~ 400 (403)
++..+++++++.
T Consensus 431 ~~~~~~~~s~s~ 442 (456)
T KOG0266|consen 431 HPTENLIASSSF 442 (456)
T ss_pred CCCcCeeeecCc
Confidence 999999998884
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.7e-33 Score=229.19 Aligned_cols=284 Identities=17% Similarity=0.236 Sum_probs=242.6
Q ss_pred CccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650 77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (403)
Q Consensus 77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (403)
......+|.+-|.|+++.|...+|++|+ |++++|||+.+++.. .++. +|...+..+++++.-.++++++.|
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk--ltlt-Ghi~~vr~vavS~rHpYlFs~ged----- 214 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK--LTLT-GHIETVRGVAVSKRHPYLFSAGED----- 214 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE--Eeec-chhheeeeeeecccCceEEEecCC-----
Confidence 3478899999999999999999999998 666999999998766 6676 899999999999999999999999
Q ss_pred ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (403)
+.|+-||++..+.++.+. |-..|.+++.+|.-..++ .|.++++||+++...+..+.+|..++..+.+.+-+.+++
T Consensus 215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi- 293 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI- 293 (460)
T ss_pred CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE-
Confidence 999999999999999998 999999999999877777 488999999999999999999999999999888666533
Q ss_pred EeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEE
Q 015650 232 VCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (403)
Q Consensus 232 ~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 310 (403)
+|+.|++|++||++.++ ...+..|+..+.+++.+|....+|+++.|. |+-|++..|..+..+.+ |...|++++
T Consensus 294 --t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn--ik~w~~p~g~f~~nlsg--h~~iintl~ 367 (460)
T KOG0285|consen 294 --TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN--IKQWKLPEGEFLQNLSG--HNAIINTLS 367 (460)
T ss_pred --EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc--ceeccCCccchhhcccc--ccceeeeee
Confidence 25699999999999865 456788999999999999999999999987 89999999999988776 778999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEecc
Q 015650 311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH 390 (403)
Q Consensus 311 ~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~ 390 (403)
...|| ++++|+++|.+.+||.+++-+....+.. ..|.. -..+..|.+.+|..
T Consensus 368 ~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~-----------------vqpGS----------l~sEagI~as~fDk 419 (460)
T KOG0285|consen 368 VNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTI-----------------VQPGS----------LESEAGIFASCFDK 419 (460)
T ss_pred eccCc-eEEEcCCceEEEEEecCcCccccccccc-----------------ccCCc----------cccccceeEEeecc
Confidence 98775 7789999999999999998764433200 11100 01145688889999
Q ss_pred CCCEEEEEccCCC
Q 015650 391 QKNTVVILGMDGR 403 (403)
Q Consensus 391 d~~~l~~~~~dG~ 403 (403)
.|..|++|..|.+
T Consensus 420 tg~rlit~eadKt 432 (460)
T KOG0285|consen 420 TGSRLITGEADKT 432 (460)
T ss_pred cCceEEeccCCcc
Confidence 9999999988854
No 24
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-33 Score=220.17 Aligned_cols=289 Identities=15% Similarity=0.173 Sum_probs=238.9
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (403)
..+.+|+.+|+-|.|+.+|.+|.+++ |....||-..+++.+ -++. +|...|+++..+.+...+++++.| .+
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl--Gty~-GHtGavW~~Did~~s~~liTGSAD-----~t 75 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL--GTYD-GHTGAVWCCDIDWDSKHLITGSAD-----QT 75 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee--eeec-CCCceEEEEEecCCcceeeecccc-----ce
Confidence 35678999999999999999999998 566999987777665 6776 899999999999999999999999 99
Q ss_pred EEEEECCCCceeEEEecCCceeEEEEecCceEEE--e------cCeEEEEEcCC-------ceeeeEeeccCCCceeEEE
Q 015650 158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L------EQKIFVYNFAD-------LKLLHQIETIANPKGLCAV 222 (403)
Q Consensus 158 i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~------d~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~ 222 (403)
+++||+++|+.+..++...+|..+.|+.+|.+++ . .+.|.++|++. .+++..+..+...+....|
T Consensus 76 ~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~W 155 (327)
T KOG0643|consen 76 AKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALW 155 (327)
T ss_pred eEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeee
Confidence 9999999999999999999999999999998777 3 35799999983 4557777777888888999
Q ss_pred eeCCCeEEEEeeCCccCeEEEEEccCCce--eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC
Q 015650 223 SQGVGSLVLVCPGLQKGQVRVEHYASKRT--KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG 300 (403)
Q Consensus 223 ~~~~~~~~~~~~g~~d~~i~v~d~~~~~~--~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~ 300 (403)
.|-++. +++ |.++|.|..||.+++.. .....|...|+.|++++|..++++++.|.+ -++||..+.++++++.
T Consensus 156 g~l~~~--ii~-Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~tl~v~Kty~-- 229 (327)
T KOG0643|consen 156 GPLGET--IIA-GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT-AKLVDVRTLEVLKTYT-- 229 (327)
T ss_pred cccCCE--EEE-ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc-ceeeeccceeeEEEee--
Confidence 998873 443 56999999999998543 335679999999999999999999999999 9999999999999998
Q ss_pred CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeC
Q 015650 301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE 380 (403)
Q Consensus 301 ~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (403)
...+|++.+++|....++.|+..... |+.+-. ....+|-+++....++++ +.++++|=
T Consensus 230 -te~PvN~aaisP~~d~VilgGGqeA~---dVTTT~----------------~r~GKFEArFyh~i~eEE--igrvkGHF 287 (327)
T KOG0643|consen 230 -TERPVNTAAISPLLDHVILGGGQEAM---DVTTTS----------------TRAGKFEARFYHLIFEEE--IGRVKGHF 287 (327)
T ss_pred -ecccccceecccccceEEecCCceee---eeeeec----------------ccccchhhhHHHHHHHHH--hccccccc
Confidence 45799999999988888777644332 333222 111223344444444444 67789999
Q ss_pred CCceEEEeccCCCEEEEEccCCC
Q 015650 381 GSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 381 ~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
++++.|||||||+..++|++||.
T Consensus 288 GPINsvAfhPdGksYsSGGEDG~ 310 (327)
T KOG0643|consen 288 GPINSVAFHPDGKSYSSGGEDGY 310 (327)
T ss_pred cCcceeEECCCCcccccCCCCce
Confidence 99999999999999999999983
No 25
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.6e-32 Score=215.48 Aligned_cols=283 Identities=14% Similarity=0.207 Sum_probs=231.2
Q ss_pred CCccccCCCCCCeEEEEEcCC-CCEEEEEc-CCcEEEEEcC-CCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCC
Q 015650 76 PAESTSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCD-PFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152 (403)
Q Consensus 76 ~~~~~~~~~~~~i~~i~~s~d-~~~l~~~~-~~~i~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 152 (403)
.....+.+|.++|..++|+|- |.+||+++ |+.||||+.. ...-.+...+..+|...|.+++|+|.+.+|++++-|
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD-- 82 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD-- 82 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc--
Confidence 344677899999999999998 88999988 5569999987 344455566777899999999999999999999999
Q ss_pred CCCceEEEEECCCC--ceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCc---eeeeEeeccCCCceeEEEe
Q 015650 153 YPLNKVMIWDDHQS--RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL---KLLHQIETIANPKGLCAVS 223 (403)
Q Consensus 153 ~~~~~i~iwd~~~~--~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~ 223 (403)
.++.||.-..+ +++..++ |+..|.+++|+++|.+|+ -|..|.||.+..+ ++...++.|...+..+.|+
T Consensus 83 ---~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 83 ---ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred ---ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence 99999986654 6788888 999999999999999999 3899999998743 5677889999999999999
Q ss_pred eCCCeEEEEeeCCccCeEEEEEcc-C---CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEec
Q 015650 224 QGVGSLVLVCPGLQKGQVRVEHYA-S---KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299 (403)
Q Consensus 224 ~~~~~~~~~~~g~~d~~i~v~d~~-~---~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~ 299 (403)
|..+ +|++ ++.|.+|++|+-. . ..+.++.+|...|.+++|++.|..|++++.|++ |+||.+.+ .+..
T Consensus 160 Pt~d--lL~S-~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~-----~~~~ 230 (312)
T KOG0645|consen 160 PTED--LLFS-CSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYT-----DLSG 230 (312)
T ss_pred CCcc--eeEE-eccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeecc-----Ccch
Confidence 9766 3443 4589999999876 3 457889999999999999999999999999999 99998652 2222
Q ss_pred CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEe
Q 015650 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLV 379 (403)
Q Consensus 300 ~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (403)
.|...+..+.|. ...|++++.|+.|++|.-...-..+.+. ++ ..+-..|
T Consensus 231 -~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~-------------------l~---------~~~~~aH 279 (312)
T KOG0645|consen 231 -MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWN-------------------LL---------AKKEGAH 279 (312)
T ss_pred -hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHH-------------------HH---------Hhhhccc
Confidence 367889999997 5689999999999999887432111110 00 1124567
Q ss_pred CCCceEEEeccC-CCEEEEEccCCC
Q 015650 380 EGSPYIVAFGHQ-KNTVVILGMDGR 403 (403)
Q Consensus 380 ~~~~~~~~fs~d-~~~l~~~~~dG~ 403 (403)
+..|+.|+|.|. .+.|++|+.||.
T Consensus 280 e~dVNsV~w~p~~~~~L~s~~DDG~ 304 (312)
T KOG0645|consen 280 EVDVNSVQWNPKVSNRLASGGDDGI 304 (312)
T ss_pred ccccceEEEcCCCCCceeecCCCce
Confidence 779999999995 799999999994
No 26
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=2.8e-31 Score=219.34 Aligned_cols=312 Identities=33% Similarity=0.582 Sum_probs=256.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650 84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (403)
Q Consensus 84 ~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~ 163 (403)
....|..+.|+.|...|..|+.+|.++|+.++..+.. ... .....|..+.|+....++++.... ..+++.++
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~-~~~--~~~~~IvEmLFSSSLvaiV~~~qp-----r~Lkv~~~ 75 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCF-SKD--TEGVSIVEMLFSSSLVAIVSIKQP-----RKLKVVHF 75 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCceeEEecCchHHhh-ccc--CCCeEEEEeecccceeEEEecCCC-----ceEEEEEc
Confidence 3456788889999999999999999999998776632 222 366789999999999999998655 78999999
Q ss_pred CCCceeEEEecCCceeEEEEecCceEEEecCeEEEEEcCCceeeeEeecc-CCCceeEEEeeCCCeEEEEeeCC-ccCeE
Q 015650 164 HQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGL-QKGQV 241 (403)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~-~d~~i 241 (403)
+.+..++.+.+...|.+|.++.+..+++....|+|||+++.++++++... .++...++++++..+.+++..++ ..|.|
T Consensus 76 Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 76 KKKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred ccCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 99999999999999999999999999998888999999999999999765 56677899999998888888554 56899
Q ss_pred EEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEE
Q 015650 242 RVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV 320 (403)
Q Consensus 242 ~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s 320 (403)
.+||..+ .....+..|++.+.+++|+++|.+||+++..|+.||||.+.+|+.+.+|+.+.....|.+++|+||+++|++
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 9999888 667788999999999999999999999999999999999999999999998877778999999999999999
Q ss_pred EeCCCcEEEEEeecCCCCCCCCCCCCC--CCCCcccccccccccccceeeeeeeeEEEEEeCCCc-eEEEecc--CCCEE
Q 015650 321 SSDKGTVHVFNLKVNSGSARSEPRSTS--DPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSP-YIVAFGH--QKNTV 395 (403)
Q Consensus 321 ~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fs~--d~~~l 395 (403)
.+..++|+||.+++....+.-.+..+. ..........++...+...+...+.++..++++... ..+++++ +..++
T Consensus 236 sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v 315 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRV 315 (391)
T ss_pred ecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEE
Confidence 999999999999987633222111110 001111122244455555667777888888888654 6677774 78999
Q ss_pred EEEccCCC
Q 015650 396 VILGMDGR 403 (403)
Q Consensus 396 ~~~~~dG~ 403 (403)
.+++.||.
T Consensus 316 ~vas~dG~ 323 (391)
T KOG2110|consen 316 LVASYDGH 323 (391)
T ss_pred EEEEcCCe
Confidence 99999984
No 27
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.5e-32 Score=216.50 Aligned_cols=275 Identities=18% Similarity=0.274 Sum_probs=225.6
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCc
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLN 156 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~ 156 (403)
+.+.+|...|.+++|+.+|..|++|+ ++.+++|+++........... +|...+-.++|++. ...+++++.| .
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~-gh~~svdql~w~~~~~d~~atas~d-----k 87 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYR-GHTDSVDQLCWDPKHPDLFATASGD-----K 87 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhccc-CCCcchhhheeCCCCCcceEEecCC-----c
Confidence 55678999999999999999999998 666999999877555444444 77778888888652 3345555555 8
Q ss_pred eEEEEECCCCceeEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (403)
Q Consensus 157 ~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (403)
+|++||++.++++..+.....-..+.|+|+|.+++ -|..|...|.++.+.+...+. ...+.-++|+ ..+.+++++
T Consensus 88 ~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~-~~nd~Fflt 165 (313)
T KOG1407|consen 88 TIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWN-NSNDLFFLT 165 (313)
T ss_pred eEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeec-CCCCEEEEe
Confidence 99999999999999998766677789999998888 377899999988776665532 3445667888 455566666
Q ss_pred eCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeC
Q 015650 234 PGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312 (403)
Q Consensus 234 ~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s 312 (403)
.| .|.|.|..... +.+..+++|.....||.|+|+|+|||+|+.|.. +.+||+...-+++.+.. +.-+|..|.||
T Consensus 166 ~G--lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~ELiC~R~isR--ldwpVRTlSFS 240 (313)
T KOG1407|consen 166 NG--LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVDELICERCISR--LDWPVRTLSFS 240 (313)
T ss_pred cC--CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce-eeccChhHhhhheeecc--ccCceEEEEec
Confidence 44 58999988876 677889999999999999999999999999999 99999999999999986 67899999999
Q ss_pred CCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCC
Q 015650 313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK 392 (403)
Q Consensus 313 ~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~ 392 (403)
.||++||++++|..|-|=++++|.. .|.+ .++++...|||+|..
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~--------------------------------~~eI----~~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDR--------------------------------VWEI----PCEGPTFTVAWHPKR 284 (313)
T ss_pred cCcceeeccCccceEEeEecccCCe--------------------------------EEEe----eccCCceeEEecCCC
Confidence 9999999999999999999999983 2322 135677889999999
Q ss_pred CEEEEEccCC
Q 015650 393 NTVVILGMDG 402 (403)
Q Consensus 393 ~~l~~~~~dG 402 (403)
..||-++.|.
T Consensus 285 ~LLAyA~ddk 294 (313)
T KOG1407|consen 285 PLLAYACDDK 294 (313)
T ss_pred ceeeEEecCC
Confidence 9999988773
No 28
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-33 Score=233.90 Aligned_cols=281 Identities=14% Similarity=0.181 Sum_probs=235.0
Q ss_pred CccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCee-EEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650 77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (403)
Q Consensus 77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~ 154 (403)
...++..|.+.|+-+.||++|++||+++ |.+..||.+..... .+.+++. +|..+|..+.|+||..++++++.+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDdryLlaCg~~---- 290 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDDRYLLACGFD---- 290 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeee-cccCceEEEEECCCCCeEEecCch----
Confidence 3478899999999999999999999999 55588998754433 3446776 899999999999999999999988
Q ss_pred CceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccC-CCceeEEEeeCCCe
Q 015650 155 LNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIA-NPKGLCAVSQGVGS 228 (403)
Q Consensus 155 ~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 228 (403)
..+.+||+.+|.+...+. +...+.+++|.|||..++ .|++|..||+. |..+...++.. ..+..+++.+||+.
T Consensus 291 -e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 291 -EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred -HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcE
Confidence 889999999999999988 458899999999998777 49999999985 55555554433 44788999999998
Q ss_pred EEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650 229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308 (403)
Q Consensus 229 ~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 308 (403)
+++++ .|..|++++......+.+.....+|+++++|.||+++++.-.+.. |++||++..+.++.+.++.....+-.
T Consensus 369 vl~v~---~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qe-i~LWDl~e~~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 369 VLLVT---VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQE-IHLWDLEENKLVRKYFGHKQGHFIIR 444 (519)
T ss_pred EEEEe---cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCe-eEEeecchhhHHHHhhcccccceEEE
Confidence 87775 889999999988666655566778999999999999998888888 99999999888888887544444555
Q ss_pred EEeCC-CCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEE
Q 015650 309 LAFSS-NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA 387 (403)
Q Consensus 309 l~~s~-d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (403)
-+|.- +..++++|++|+.|+||+..+++. +..+.+|...|++|+
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkl-----------------------------------l~~LsGHs~~vNcVs 489 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGKL-----------------------------------LAVLSGHSKTVNCVS 489 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCce-----------------------------------eEeecCCcceeeEEe
Confidence 55653 557999999999999999999985 556788899999999
Q ss_pred ecc-CCCEEEEEccCCC
Q 015650 388 FGH-QKNTVVILGMDGR 403 (403)
Q Consensus 388 fs~-d~~~l~~~~~dG~ 403 (403)
|.| |-..+|+|+.||+
T Consensus 490 wNP~~p~m~ASasDDgt 506 (519)
T KOG0293|consen 490 WNPADPEMFASASDDGT 506 (519)
T ss_pred cCCCCHHHhhccCCCCe
Confidence 999 5688999999996
No 29
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-31 Score=230.68 Aligned_cols=284 Identities=16% Similarity=0.221 Sum_probs=230.1
Q ss_pred CCccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650 76 PAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (403)
Q Consensus 76 ~~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~ 154 (403)
.-...+..|..-|+|+.|+|||.++++.+ |+.+.|||=.+++.+....-..+|...|.++.|+||...+++.+.|
T Consensus 181 KFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD---- 256 (603)
T KOG0318|consen 181 KFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD---- 256 (603)
T ss_pred eeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC----
Confidence 33467888999999999999999999877 6669999988888775444335799999999999999999999999
Q ss_pred CceEEEEECCCCceeEEEecC----CceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650 155 LNKVMIWDDHQSRCIGELSFR----SEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (403)
Q Consensus 155 ~~~i~iwd~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (403)
.+++|||+.+.++++++... ..-..+.|..|..+.+ .+|+|.+++...+..++.+.+|...|+++.++++++.+
T Consensus 257 -kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i 335 (603)
T KOG0318|consen 257 -KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTI 335 (603)
T ss_pred -ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEE
Confidence 99999999999999999833 3344566765555555 69999999999999999999999999999999999644
Q ss_pred EEEeeCCccCeEEEEEccCCce--------------------------------e-------------------------
Q 015650 230 VLVCPGLQKGQVRVEHYASKRT--------------------------------K------------------------- 252 (403)
Q Consensus 230 ~~~~~g~~d~~i~v~d~~~~~~--------------------------------~------------------------- 252 (403)
+ +|+.||.|.-|+...+.. +
T Consensus 336 ~---SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~la 412 (603)
T KOG0318|consen 336 Y---SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLA 412 (603)
T ss_pred E---eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEE
Confidence 3 256899999998754210 0
Q ss_pred -----------------EEeec--------CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEE
Q 015650 253 -----------------FIMAH--------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY 307 (403)
Q Consensus 253 -----------------~~~~~--------~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~ 307 (403)
.++.+ .-...+++++|++..++.|+.|+. |+||.+..++...+.....|.++|+
T Consensus 413 v~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgk-vhvysl~g~~l~ee~~~~~h~a~iT 491 (603)
T KOG0318|consen 413 VLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGK-VHVYSLSGDELKEEAKLLEHRAAIT 491 (603)
T ss_pred EcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccce-EEEEEecCCcccceeeeecccCCce
Confidence 00000 112356788999999999999999 9999998766544433334889999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEE
Q 015650 308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA 387 (403)
Q Consensus 308 ~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (403)
+++||||+.+||++...+.+.+||+.+.+.. ......|...|.+++
T Consensus 492 ~vaySpd~~yla~~Da~rkvv~yd~~s~~~~----------------------------------~~~w~FHtakI~~~a 537 (603)
T KOG0318|consen 492 DVAYSPDGAYLAAGDASRKVVLYDVASREVK----------------------------------TNRWAFHTAKINCVA 537 (603)
T ss_pred EEEECCCCcEEEEeccCCcEEEEEcccCcee----------------------------------cceeeeeeeeEEEEE
Confidence 9999999999999999999999999998841 223566788999999
Q ss_pred eccCCCEEEEEccCC
Q 015650 388 FGHQKNTVVILGMDG 402 (403)
Q Consensus 388 fs~d~~~l~~~~~dG 402 (403)
|+|+...||+|+-|-
T Consensus 538 WsP~n~~vATGSlDt 552 (603)
T KOG0318|consen 538 WSPNNKLVATGSLDT 552 (603)
T ss_pred eCCCceEEEeccccc
Confidence 999999999999874
No 30
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5.1e-34 Score=242.84 Aligned_cols=279 Identities=15% Similarity=0.187 Sum_probs=236.3
Q ss_pred cccCCCCCCeEEEEEcC-CCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650 79 STSSSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~-d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (403)
..+.+|+..|+++.|.| .+.+|++++ |..|+||++-... .+.+++. +|..+|.++.|+.++..+.+++-| +
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD-----~ 280 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-RCLRTFK-GHRKPVRDASFNNCGTSFLSASFD-----R 280 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-ceehhhh-cchhhhhhhhccccCCeeeeeecc-----e
Confidence 56899999999999999 788899888 5559999997633 3347887 899999999999999999999999 9
Q ss_pred eEEEEECCCCceeEEEecCCceeEEEEecCc-e-EEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEE
Q 015650 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-I-IVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (403)
Q Consensus 157 ~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (403)
.|++||+++|+++..+.....+.++.|+||+ . +++ +|+.|+.||+++++.++++..|.+.+..+.|-+++..++..
T Consensus 281 ~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999999999999989999999999987 3 333 69999999999999999999999999999999998875544
Q ss_pred eeCCccCeEEEEEccCCceeEE--eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC---cEEEEEecCCCcccEE
Q 015650 233 CPGLQKGQVRVEHYASKRTKFI--MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG---TLLQEVRRGADRAEIY 307 (403)
Q Consensus 233 ~~g~~d~~i~v~d~~~~~~~~~--~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~---~~~~~~~~~~~~~~v~ 307 (403)
++|+.++||+.+....... ..+.....++..+|++.++++-+.|.. |.+|.+... ...+.++++.-.+.-.
T Consensus 361 ---SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~-i~ifs~~~~~r~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 361 ---SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY-IAIFSTVPPFRLNKKKRFEGHSVAGYSC 436 (503)
T ss_pred ---ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce-EEEEecccccccCHhhhhcceeccCcee
Confidence 4899999999988554332 233445678999999999999999999 999986532 2334566655556778
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEE
Q 015650 308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA 387 (403)
Q Consensus 308 ~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (403)
.+.|||||++|++|..||.+.+||.++-+. +..++.|++.+..+.
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl-----------------------------------~~~lkah~~~ci~v~ 481 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDWKTTKL-----------------------------------VSKLKAHDQPCIGVD 481 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeechhhhh-----------------------------------hhccccCCcceEEEE
Confidence 899999999999999999999999999884 444678888999999
Q ss_pred eccCC-CEEEEEccCCC
Q 015650 388 FGHQK-NTVVILGMDGR 403 (403)
Q Consensus 388 fs~d~-~~l~~~~~dG~ 403 (403)
|+|.. ..+|+++.||.
T Consensus 482 wHP~e~Skvat~~w~G~ 498 (503)
T KOG0282|consen 482 WHPVEPSKVATCGWDGL 498 (503)
T ss_pred ecCCCcceeEecccCce
Confidence 99964 78899999983
No 31
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.2e-32 Score=222.99 Aligned_cols=276 Identities=14% Similarity=0.142 Sum_probs=232.4
Q ss_pred CccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650 77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (403)
Q Consensus 77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (403)
....|..|+..|.+++.+|+.+++++|+ |+.-.||++.++... ..+. +|...|+++.|+.++.+|++++.+
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~--~elt-gHKDSVt~~~FshdgtlLATGdms----- 127 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA--GELT-GHKDSVTCCSFSHDGTLLATGDMS----- 127 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce--eEec-CCCCceEEEEEccCceEEEecCCC-----
Confidence 3467899999999999999999999998 666999999888754 5565 899999999999999999999999
Q ss_pred ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (403)
|.|+||...++.....+. .-..|.-+.|+|.+.+++ .||.+.+|.+..+...+.+.+|..++.+=.|.|+|++++.
T Consensus 128 G~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 128 GKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT 207 (399)
T ss_pred ccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEE
Confidence 999999999999888886 667888999999888777 5999999999998888999999999999999999987655
Q ss_pred EeeCCccCeEEEEEccCCcee-EEe---------------------------------------------------ecCC
Q 015650 232 VCPGLQKGQVRVEHYASKRTK-FIM---------------------------------------------------AHDS 259 (403)
Q Consensus 232 ~~~g~~d~~i~v~d~~~~~~~-~~~---------------------------------------------------~~~~ 259 (403)
+ ..||+|++|+..++... .+. .+..
T Consensus 208 g---y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~ 284 (399)
T KOG0296|consen 208 G---YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEE 284 (399)
T ss_pred E---ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchh
Confidence 5 47999999999874321 000 1111
Q ss_pred ceEEEEE---cCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 260 RIACFAL---TQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 260 ~i~~~~~---sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
.+.|+.+ +..-.+.|+|+-||+ |.|||+...++...+. |...|..+.|-+ ..+|++++.+|.|+.||.++++
T Consensus 285 ~~esve~~~~ss~lpL~A~G~vdG~-i~iyD~a~~~~R~~c~---he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 285 LDESVESIPSSSKLPLAACGSVDGT-IAIYDLAASTLRHICE---HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred hhhhhhhcccccccchhhcccccce-EEEEecccchhheecc---CCCceEEEEEcC-cchheeeccCceEEeeeccccc
Confidence 2223333 334457789999999 9999999888877776 888999999988 7899999999999999999998
Q ss_pred CCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
. ...+++|...|.+++++|+.+.+++++.|++
T Consensus 360 l-----------------------------------~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 360 L-----------------------------------KFTYTGHQMGILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred e-----------------------------------EEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence 4 3347888899999999999999999999974
No 32
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-32 Score=241.65 Aligned_cols=250 Identities=14% Similarity=0.194 Sum_probs=220.4
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (403)
+.+..++++|-++.|+|...+++++--+| |.||+.++...+ +.+. -...+|.+..|-....++++|++| ..
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmV--ksfe-V~~~PvRa~kfiaRknWiv~GsDD-----~~ 78 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV--KSFE-VSEVPVRAAKFIARKNWIVTGSDD-----MQ 78 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceee--eeee-ecccchhhheeeeccceEEEecCC-----ce
Confidence 44566899999999999999998887554 999999877655 6665 567788999999999999999999 99
Q ss_pred EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE--e-cCeEEEEEcCC-ceeeeEeeccCCCceeEEEeeCCCeEEEE
Q 015650 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--L-EQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (403)
Q Consensus 158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~-d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (403)
|+||+..+++.+..|+ |..-|++++.+|...++. + |-+|++||.+. ..+.+++++|.+-+..++|.|.+.+.+..
T Consensus 79 IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS 158 (794)
T KOG0276|consen 79 IRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFAS 158 (794)
T ss_pred EEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceee
Confidence 9999999999999999 999999999999988888 2 66999999986 47888999999999999999987775543
Q ss_pred eeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCC--CEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEE
Q 015650 233 CPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDG--QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL 309 (403)
Q Consensus 233 ~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g--~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l 309 (403)
++-|++|+||.+.. ....++.+|...|+|+.|-+.| .+|++|+.|.+ |+|||.++..|++++.+ |...|..+
T Consensus 159 --~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk~CV~TLeG--Ht~Nvs~v 233 (794)
T KOG0276|consen 159 --ASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTKSCVQTLEG--HTNNVSFV 233 (794)
T ss_pred --eeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchHHHHHHhhc--ccccceEE
Confidence 46899999999987 4567889999999999998744 69999999999 99999999999999997 66789999
Q ss_pred EeCCCCCEEEEEeCCCcEEEEEeecCCCCCCC
Q 015650 310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARS 341 (403)
Q Consensus 310 ~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~ 341 (403)
.|+|.-.++++|++||+|+||+-.+.+.+..+
T Consensus 234 ~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 234 FFHPELPIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred EecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence 99999999999999999999999998865443
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.9e-33 Score=248.71 Aligned_cols=231 Identities=19% Similarity=0.265 Sum_probs=203.8
Q ss_pred CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc-------------------------------eeEEEe-c
Q 015650 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-------------------------------CIGELS-F 174 (403)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~-------------------------------~~~~~~-~ 174 (403)
.....+.+..|+++...+|.|-.| ..|++|.+...+ ..+++. |
T Consensus 376 nt~~~v~ca~fSddssmlA~Gf~d-----S~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH 450 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSSMLACGFVD-----SSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH 450 (707)
T ss_pred EcCCcceeEeecCCcchhhccccc-----cEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence 355678888899999988888888 899999876311 122344 9
Q ss_pred CCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-Cc
Q 015650 175 RSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KR 250 (403)
Q Consensus 175 ~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~ 250 (403)
.++|..+.|+|+.++++ .|+++++|.+.+..++..+++|..++..+.|+|.| .+++++ +.|++.++|.... ..
T Consensus 451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G--yYFata-s~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG--YYFATA-SHDQTARLWSTDHNKP 527 (707)
T ss_pred CCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc--eEEEec-CCCceeeeeecccCCc
Confidence 99999999999999999 38999999999999999999999999999999774 577764 5899999999877 56
Q ss_pred eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEE
Q 015650 251 TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330 (403)
Q Consensus 251 ~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iw 330 (403)
.+.+.+|...|.|+.|+|+..|+++||.|.+ |++||+.+|..++.|.+ |.++|.+++|||+|++|++|+.||.|++|
T Consensus 528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G~~VRiF~G--H~~~V~al~~Sp~Gr~LaSg~ed~~I~iW 604 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTGNSVRIFTG--HKGPVTALAFSPCGRYLASGDEDGLIKIW 604 (707)
T ss_pred hhhhcccccccceEEECCcccccccCCCCce-EEEEEcCCCcEEEEecC--CCCceEEEEEcCCCceEeecccCCcEEEE
Confidence 6778899999999999999999999999999 99999999999999987 78999999999999999999999999999
Q ss_pred EeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 331 NLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 331 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
|+.+++. +.+++.|.+.++.+.||.||+.||+|+.|.+
T Consensus 605 Dl~~~~~-----------------------------------v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 605 DLANGSL-----------------------------------VKQLKGHTGTIYSLSFSRDGNVLASGGADNS 642 (707)
T ss_pred EcCCCcc-----------------------------------hhhhhcccCceeEEEEecCCCEEEecCCCCe
Confidence 9999985 3446778899999999999999999999864
No 34
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.2e-31 Score=259.61 Aligned_cols=285 Identities=15% Similarity=0.197 Sum_probs=218.6
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCe----e--EEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCC
Q 015650 81 SSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFR----E--IFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQ 152 (403)
Q Consensus 81 ~~~~~~~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~----~--~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~ 152 (403)
...|.+.|.+++|+|+|++||+|+. +.|+||++.... . .....+. +...+.++.|++ ++..+++++.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~las~~~D-- 554 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA--SRSKLSGICWNSYIKSQVASSNFE-- 554 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec--ccCceeeEEeccCCCCEEEEEeCC--
Confidence 3458999999999999999999985 459999975321 0 0112232 345788888876 46678899888
Q ss_pred CCCceEEEEECCCCceeEEEe-cCCceeEEEEec-CceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650 153 YPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (403)
Q Consensus 153 ~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (403)
|.|++||+.+++.+..+. |...|.+++|+| ++.+++ .|++|++||+++++.+..+..+ ..+.++.|.+...
T Consensus 555 ---g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g 630 (793)
T PLN00181 555 ---GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESG 630 (793)
T ss_pred ---CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCC
Confidence 999999999999988887 999999999997 677666 4899999999999888888654 4667777755433
Q ss_pred eEEEEeeCCccCeEEEEEccCCc--eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC------CcEEEEEec
Q 015650 228 SLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD------GTLLQEVRR 299 (403)
Q Consensus 228 ~~~~~~~g~~d~~i~v~d~~~~~--~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~------~~~~~~~~~ 299 (403)
. ++++ |+.|+.|++||++... ...+.+|...|.++.|. ++.+|++++.|+. |+|||+.. .+++..+.+
T Consensus 631 ~-~lat-gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~~~~~~~l~~~~g 706 (793)
T PLN00181 631 R-SLAF-GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSISGINETPLHSFMG 706 (793)
T ss_pred C-EEEE-EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCccccCCcceEEEcC
Confidence 3 3444 4589999999998743 45678899999999997 7889999999999 99999974 356777775
Q ss_pred CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeE--EEE
Q 015650 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA--QFR 377 (403)
Q Consensus 300 ~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 377 (403)
|...+..+.|++++.+|++|+.|+.|++|+.........+. +...+... ...
T Consensus 707 --h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~------------------------~~~~~~~~~~~~~ 760 (793)
T PLN00181 707 --HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYK------------------------FKTIDPVSGLEVD 760 (793)
T ss_pred --CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEe------------------------cccCCcccccccC
Confidence 67889999999999999999999999999987664321110 00000000 012
Q ss_pred EeCCCceEEEeccCCCEEEEEccCCC
Q 015650 378 LVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 378 ~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
.++..|..++|+|+++.|++|+.||+
T Consensus 761 ~~~~~V~~v~ws~~~~~lva~~~dG~ 786 (793)
T PLN00181 761 DASQFISSVCWRGQSSTLVAANSTGN 786 (793)
T ss_pred CCCcEEEEEEEcCCCCeEEEecCCCc
Confidence 23456899999999999999999985
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.5e-32 Score=223.26 Aligned_cols=245 Identities=16% Similarity=0.266 Sum_probs=217.6
Q ss_pred ccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650 78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (403)
Q Consensus 78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (403)
...+.+|.+.|..|+|+..|++|++++.+. +++||.+..... .+.+. +|...|.++.|-|.+.+++++++| .
T Consensus 143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c-~ks~~-gh~h~vS~V~f~P~gd~ilS~srD-----~ 215 (406)
T KOG0295|consen 143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRC-IKSLI-GHEHGVSSVFFLPLGDHILSCSRD-----N 215 (406)
T ss_pred hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHH-HHHhc-CcccceeeEEEEecCCeeeecccc-----c
Confidence 367899999999999999999999999666 999998764222 14444 789999999999999999999999 9
Q ss_pred eEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC-----
Q 015650 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG----- 227 (403)
Q Consensus 157 ~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 227 (403)
+|+.|++.+|.++.++. |.+.|.-+..+.||.+++ .|.++++|-+.++++...++.|..++.+++|.|...
T Consensus 216 tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~ 295 (406)
T KOG0295|consen 216 TIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSIS 295 (406)
T ss_pred ceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchh
Confidence 99999999999999999 999999999999999999 388999999999999999999999999999987421
Q ss_pred -------eEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEec
Q 015650 228 -------SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299 (403)
Q Consensus 228 -------~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~ 299 (403)
..-+..+++.|++|++||+.++. +.++.+|..+|..++|+|.|+||+++..|++ +++||+++++++..+..
T Consensus 296 ~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~~~cmk~~~a 374 (406)
T KOG0295|consen 296 EATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKNLQCMKTLEA 374 (406)
T ss_pred hccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEeccceeeeccCC
Confidence 11233347799999999999954 5778999999999999999999999999999 99999999999999985
Q ss_pred CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEe
Q 015650 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL 332 (403)
Q Consensus 300 ~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~ 332 (403)
|+.-|+++.|+.+..++++|+-|.++++|.-
T Consensus 375 --h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 375 --HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred --CcceeEEEecCCCCceEEeccccceeeeeec
Confidence 7789999999999999999999999999974
No 36
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-31 Score=238.39 Aligned_cols=282 Identities=16% Similarity=0.230 Sum_probs=235.4
Q ss_pred CCCCCCccccCCCCCCeEEEEE-cCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCC
Q 015650 72 PLPSPAESTSSSPPPTLLHISF-NQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP 149 (403)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~~i~~-s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~ 149 (403)
.++....+.+.|..+.|..|.| .|+.++||+++... +|+|++.+..+. .+. +|...|.++....++.++++++.
T Consensus 310 ~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~-GH~e~vlSL~~~~~g~llat~sK 385 (775)
T KOG0319|consen 310 EDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---IIP-GHTEAVLSLDVWSSGDLLATGSK 385 (775)
T ss_pred ccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE---EEe-CchhheeeeeecccCcEEEEecC
Confidence 3444555677888899999999 67889999998665 999988776654 344 89999999997677799999999
Q ss_pred CCCCCCceEEEEECCCCc----eeEEEe-cCCceeEEEEecCce-EEE---ecCeEEEEEcCCcee---------eeEee
Q 015650 150 DPQYPLNKVMIWDDHQSR----CIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKL---------LHQIE 211 (403)
Q Consensus 150 d~~~~~~~i~iwd~~~~~----~~~~~~-~~~~i~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~---------~~~~~ 211 (403)
| +++++|.++++. ++.... |...|.+++++..+. +++ .|.++++|++...+. .....
T Consensus 386 D-----~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~ 460 (775)
T KOG0319|consen 386 D-----KSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER 460 (775)
T ss_pred C-----ceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHH
Confidence 9 999999885543 233344 899999999977654 333 599999999976211 11234
Q ss_pred ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC
Q 015650 212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (403)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~ 290 (403)
.|...|.+++++|+.. ++++ |+.|.+.+||+++... ..++.+|...|.|+.|+|..+.++++|.|++ |+||.+.+
T Consensus 461 aHdKdIN~Vaia~ndk--LiAT-~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is~ 536 (775)
T KOG0319|consen 461 AHDKDINCVAIAPNDK--LIAT-GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSIST 536 (775)
T ss_pred hhcccccceEecCCCc--eEEe-cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEecc
Confidence 6888999999999876 4554 7799999999999744 4678899999999999999999999999999 99999999
Q ss_pred CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeee
Q 015650 291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSE 370 (403)
Q Consensus 291 ~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (403)
..++++|.+ |...|..+.|-.+|+.|++++.||.|++|++++++.+.
T Consensus 537 fSClkT~eG--H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~------------------------------- 583 (775)
T KOG0319|consen 537 FSCLKTFEG--HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM------------------------------- 583 (775)
T ss_pred ceeeeeecC--ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh-------------------------------
Confidence 999999997 78999999999999999999999999999999999643
Q ss_pred eeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 371 WSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 371 ~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
.+..|++.|++++-++++..+++|+.||.
T Consensus 584 ----tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~ 612 (775)
T KOG0319|consen 584 ----TLDAHNDRVWALSVSPLLDMFVTGGGDGR 612 (775)
T ss_pred ----hhhhccceeEEEeecCccceeEecCCCeE
Confidence 35667889999999999999999999984
No 37
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.5e-33 Score=227.04 Aligned_cols=231 Identities=15% Similarity=0.310 Sum_probs=194.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEE
Q 015650 83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (403)
Q Consensus 83 ~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iw 161 (403)
.....|.|+.+ |...+++|. |++|+|||.++.... +.+. +|...|.++.|... .+++|+.| .+|++|
T Consensus 195 e~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~--~~L~-GHtGSVLCLqyd~r--viisGSSD-----sTvrvW 262 (499)
T KOG0281|consen 195 ENSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECL--KILT-GHTGSVLCLQYDER--VIVSGSSD-----STVRVW 262 (499)
T ss_pred ccCCceEEEEe--cchhhhcccccCceEEeccccHHHH--Hhhh-cCCCcEEeeeccce--EEEecCCC-----ceEEEE
Confidence 35568999998 445778887 788999998776655 6676 89999999998654 88999999 999999
Q ss_pred ECCCCceeEEEe-cCCceeEEEEecCceEEE-ecCeEEEEEcCCce---eeeEeeccCCCceeEEEeeCCCeEEEEeeCC
Q 015650 162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLK---LLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (403)
Q Consensus 162 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 236 (403)
|+++|+++.++- |.+.|..+.|+..-.... -|.+|.+||+.... +.+.+.+|...+..+.|+.. +++++ +
T Consensus 263 Dv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k----yIVsA-S 337 (499)
T KOG0281|consen 263 DVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK----YIVSA-S 337 (499)
T ss_pred eccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc----eEEEe-c
Confidence 999999999988 899999999987554444 48999999997643 34556788888887777543 45543 4
Q ss_pred ccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCC
Q 015650 237 QKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA 315 (403)
Q Consensus 237 ~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~ 315 (403)
.|.+|++|++.+.. ++++.+|...|.|+.+ .|+++++|+.|.+ |++||+..|.+++.+++ |+.-|.++.| |.
T Consensus 338 gDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~G~cLRvLeG--HEeLvRciRF--d~ 410 (499)
T KOG0281|consen 338 GDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRCIRF--DN 410 (499)
T ss_pred CCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccccHHHHHHhc--hHHhhhheee--cC
Confidence 79999999999954 6778999999999998 8899999999999 99999999999999997 7889999999 67
Q ss_pred CEEEEEeCCCcEEEEEeecCCC
Q 015650 316 QWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 316 ~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
+.+++|+.||+|++||+..+..
T Consensus 411 krIVSGaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQAALD 432 (499)
T ss_pred ceeeeccccceEEEEecccccC
Confidence 8999999999999999998874
No 38
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.8e-33 Score=230.28 Aligned_cols=245 Identities=14% Similarity=0.189 Sum_probs=215.0
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (403)
.+...|...|.++.|+++|.++++|+.++ |++|+..-.. + +.+..+|...|.+++|+++...++++++| |+
T Consensus 132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-V--k~~~ahh~eaIRdlafSpnDskF~t~SdD-----g~ 203 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-V--KIIQAHHAEAIRDLAFSPNDSKFLTCSDD-----GT 203 (464)
T ss_pred HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-h--HHhhHhhhhhhheeccCCCCceeEEecCC-----Ce
Confidence 56788999999999999999999999777 9999965332 2 34444677999999999999999999999 99
Q ss_pred EEEEECCCCceeEEEe-cCCceeEEEEecCceEEEe---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (403)
Q Consensus 158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (403)
|+|||....+....+. |.-.|.++.|+|...++++ |+.|++||.++++++.++..|...|..+.|.++++ ++++
T Consensus 204 ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N--~Llt 281 (464)
T KOG0284|consen 204 IKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN--WLLT 281 (464)
T ss_pred EEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCC--eeEE
Confidence 9999999888888888 8999999999999888883 78999999999999999999999999999999985 4554
Q ss_pred eCCccCeEEEEEccC-CceeEEeecCCceEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEe
Q 015650 234 PGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311 (403)
Q Consensus 234 ~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~ 311 (403)
++.|..++++|+++ +++..+++|+..+.++.|+| ...+|.+|+.||. |..|.+...+++..+.. +|...|++++|
T Consensus 282 -~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~~p~~~i~~-AHd~~iwsl~~ 358 (464)
T KOG0284|consen 282 -GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLEEPLGEIPP-AHDGEIWSLAY 358 (464)
T ss_pred -ccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEeccccccccCCCc-ccccceeeeec
Confidence 45999999999995 77888999999999999999 5678899999999 99999986777766664 48899999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 312 SSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 312 s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
+|-|.+|++|+.|.++++|.-....
T Consensus 359 hPlGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 359 HPLGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred cccceeEeecCCCcceeeeccCCCC
Confidence 9999999999999999999765443
No 39
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.5e-30 Score=214.37 Aligned_cols=245 Identities=17% Similarity=0.222 Sum_probs=206.2
Q ss_pred CccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650 77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (403)
Q Consensus 77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (403)
..-.+.+|.+.|+++.|+.||.+||+|+ ++.|+||...++.... .+. .....+.-+.|+|....++.|+.|
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~--~~~-~e~~dieWl~WHp~a~illAG~~D----- 169 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQW--KLD-QEVEDIEWLKWHPRAHILLAGSTD----- 169 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEE--Eee-cccCceEEEEecccccEEEeecCC-----
Confidence 3456889999999999999999999999 5559999998887663 343 356678889999999999999999
Q ss_pred ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCC-Cc-------------
Q 015650 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIAN-PK------------- 217 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~-~~------------- 217 (403)
|.+.+|.+.++...+.+. |..++++-.|.|+|+.++ .||+|++||+.+++++..+....+ ..
T Consensus 170 GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~ 249 (399)
T KOG0296|consen 170 GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLT 249 (399)
T ss_pred CcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeE
Confidence 999999999987777887 999999999999999888 599999999999988777652110 00
Q ss_pred -------------------------------------eeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCc
Q 015650 218 -------------------------------------GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSR 260 (403)
Q Consensus 218 -------------------------------------~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~ 260 (403)
.++.+.|....+-+++.|+-||+|.|||+....++.+..|...
T Consensus 250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~ 329 (399)
T KOG0296|consen 250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG 329 (399)
T ss_pred eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCc
Confidence 0011112122233444577899999999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650 261 IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (403)
Q Consensus 261 i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~ 333 (403)
|..+.|-+ ..+|++++.+|. |+.||.++|+++.++.+ |...|.+++++|+++++++++.|++.+||++.
T Consensus 330 V~~l~w~~-t~~l~t~c~~g~-v~~wDaRtG~l~~~y~G--H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 330 VTKLKWLN-TDYLLTACANGK-VRQWDARTGQLKFTYTG--HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEEcC-cchheeeccCce-EEeeeccccceEEEEec--CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999998 789999999999 99999999999999997 77999999999999999999999999999874
No 40
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=6e-32 Score=211.88 Aligned_cols=275 Identities=15% Similarity=0.173 Sum_probs=233.6
Q ss_pred cccCCCCCCeEEEEEcC---CCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650 79 STSSSPPPTLLHISFNQ---DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~---d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~ 154 (403)
.+..+|+.+|..++|+| +|-+|++++.++ -.+-+-+++.-+ .++. +|...|+....+.+....+++..|
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi--gtfe-ghkgavw~~~l~~na~~aasaaad---- 80 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI--GTFE-GHKGAVWSATLNKNATRAASAAAD---- 80 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE--Eeee-ccCcceeeeecCchhhhhhhhccc----
Confidence 46789999999999975 888999998544 555555565544 7887 899999999999999999999988
Q ss_pred CceEEEEECCCCceeEEEecCCceeEEEEecCceEEEe---cCeEEEEEcCCc-eeeeEeeccCCCceeEEEeeCCCeEE
Q 015650 155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLV 230 (403)
Q Consensus 155 ~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (403)
-+-++||.-+|..+..|+|..-|..++|+.|..+++. +.-+++||++.. .+..++.+|.+.|..+.|....+. +
T Consensus 81 -ftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~-i 158 (334)
T KOG0278|consen 81 -FTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKC-I 158 (334)
T ss_pred -chhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCce-E
Confidence 8999999999999999999999999999999998884 667999999874 456778899999999988876654 3
Q ss_pred EEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEE
Q 015650 231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (403)
Q Consensus 231 ~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 310 (403)
+.+ ..|++|++||.+++....-.....+|+++.++++|++|.++. .+. |++||..+..+++.++ -+..|.+..
T Consensus 159 LSS--add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gss-V~Fwdaksf~~lKs~k---~P~nV~SAS 231 (334)
T KOG0278|consen 159 LSS--ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSS-VKFWDAKSFGLLKSYK---MPCNVESAS 231 (334)
T ss_pred Eee--ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-Cce-eEEeccccccceeecc---Ccccccccc
Confidence 332 589999999999977666556678899999999999886654 445 9999999999999888 457899999
Q ss_pred eCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEecc
Q 015650 311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH 390 (403)
Q Consensus 311 ~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~ 390 (403)
++|+...+++|++|..++.||+.+++.... ..++|-++|.+|.|+|
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~----------------------------------~nkgh~gpVhcVrFSP 277 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGS----------------------------------YNKGHFGPVHCVRFSP 277 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccCCceeee----------------------------------cccCCCCceEEEEECC
Confidence 999999999999999999999999985211 1477889999999999
Q ss_pred CCCEEEEEccCCC
Q 015650 391 QKNTVVILGMDGR 403 (403)
Q Consensus 391 d~~~l~~~~~dG~ 403 (403)
||...++|++|||
T Consensus 278 dGE~yAsGSEDGT 290 (334)
T KOG0278|consen 278 DGELYASGSEDGT 290 (334)
T ss_pred CCceeeccCCCce
Confidence 9999999999996
No 41
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-29 Score=218.64 Aligned_cols=298 Identities=16% Similarity=0.206 Sum_probs=231.0
Q ss_pred EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCcee
Q 015650 90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169 (403)
Q Consensus 90 ~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~ 169 (403)
-|.-.|.|..++....+.|.+-+++..... ..+. .|...++-..|+|.+.++++++.. |+|+|||....+.+
T Consensus 23 ~ig~dpkgd~ilY~nGksv~ir~i~~~~~~--~iYt-EH~~~vtVAkySPsG~yiASGD~s-----G~vRIWdtt~~~hi 94 (603)
T KOG0318|consen 23 IIGGDPKGDNILYTNGKSVIIRNIDNPASV--DIYT-EHAHQVTVAKYSPSGFYIASGDVS-----GKVRIWDTTQKEHI 94 (603)
T ss_pred EeccCCCCCeEEEeCCCEEEEEECCCccce--eeec-cccceeEEEEeCCCceEEeecCCc-----CcEEEEeccCccee
Confidence 355678888888887777888888776654 3443 688889999999999999999998 99999998765443
Q ss_pred E--EEe-cCCceeEEEEecCceEEE--ecC-----eEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccC
Q 015650 170 G--ELS-FRSEVRSVKLRRDRIIVV--LEQ-----KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (403)
Q Consensus 170 ~--~~~-~~~~i~~~~~~~~~~~~~--~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 239 (403)
. +++ ..++|.+++|+.|++.++ .+| .+.+|| +|..+-++.+|...+..+.|.|.....+ ++ +++|+
T Consensus 95 LKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi-~T-~sdDn 170 (603)
T KOG0318|consen 95 LKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRI-AT-GSDDN 170 (603)
T ss_pred eeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCccceeeccceeEeeeeccCCCceEE-Ee-ccCCC
Confidence 3 344 789999999999998887 333 466776 6778888999999999999999876544 33 56999
Q ss_pred eEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe-cCCCcccEEEEEeCCCCCE
Q 015650 240 QVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR-RGADRAEIYSLAFSSNAQW 317 (403)
Q Consensus 240 ~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~-~~~~~~~v~~l~~s~d~~~ 317 (403)
.|.+|+-.- +-...+..|..-|.|+.|+|||.++++.+.||+ |.+||-.+++.+..+. ..+|.+.|.+|+|+||++.
T Consensus 171 ~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk-i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~ 249 (603)
T KOG0318|consen 171 TVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK-IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQ 249 (603)
T ss_pred eEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc-EEEEcCCCccEEEEecCCCCccccEEEEEECCCCce
Confidence 999998544 333456678999999999999999999999999 9999999999999998 3458899999999999999
Q ss_pred EEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccc-----c----cccccceee--eeeeeEEEEEeCCCceEE
Q 015650 318 LAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF-----I----KGVLPKYFS--SEWSVAQFRLVEGSPYIV 386 (403)
Q Consensus 318 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 386 (403)
|++++.|.+++|||+.+.+.+.+..-.+..+ +..-+.-+ + .+.+ .++. ..-....+.+|...|+++
T Consensus 250 ~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~--dqqvG~lWqkd~lItVSl~G~i-n~ln~~d~~~~~~i~GHnK~ITaL 326 (603)
T KOG0318|consen 250 FLTVSADKTIKIWDVSTNSLVSTWPMGSTVE--DQQVGCLWQKDHLITVSLSGTI-NYLNPSDPSVLKVISGHNKSITAL 326 (603)
T ss_pred EEEecCCceEEEEEeeccceEEEeecCCchh--ceEEEEEEeCCeEEEEEcCcEE-EEecccCCChhheecccccceeEE
Confidence 9999999999999999998766654221100 00000000 0 0111 0111 001244578999999999
Q ss_pred EeccCCCEEEEEccCCC
Q 015650 387 AFGHQKNTVVILGMDGR 403 (403)
Q Consensus 387 ~fs~d~~~l~~~~~dG~ 403 (403)
+.++|+++|++|+.||.
T Consensus 327 tv~~d~~~i~SgsyDG~ 343 (603)
T KOG0318|consen 327 TVSPDGKTIYSGSYDGH 343 (603)
T ss_pred EEcCCCCEEEeeccCce
Confidence 99999999999999994
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=7.4e-31 Score=238.52 Aligned_cols=272 Identities=17% Similarity=0.231 Sum_probs=230.3
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650 81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (403)
Q Consensus 81 ~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~ 159 (403)
+...+.+|-.++|+|...++.++--.| |++||..-+..+ ..|. .|..+|..+.|++...++++|++| ..|+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli--~rFd-eHdGpVRgv~FH~~qplFVSGGDD-----ykIk 76 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI--DRFD-EHDGPVRGVDFHPTQPLFVSGGDD-----YKIK 76 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHH--hhhh-ccCCccceeeecCCCCeEEecCCc-----cEEE
Confidence 445567899999999999999998555 999998866554 6676 899999999999999999999999 9999
Q ss_pred EEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC
Q 015650 160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (403)
Q Consensus 160 iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 235 (403)
+|+.++.+++.++. |-..|..+.|++.--+++ -|.+|+||+..+.+++..+.+|.+.+.+..|+|..+ ++++ +
T Consensus 77 VWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED--lIVS-a 153 (1202)
T KOG0292|consen 77 VWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED--LIVS-A 153 (1202)
T ss_pred EEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc--eEEE-e
Confidence 99999999999988 999999999999998888 378999999999999999999999999999999776 3333 5
Q ss_pred CccCeEEEEEccCCc------------------------------eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 015650 236 LQKGQVRVEHYASKR------------------------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI 285 (403)
Q Consensus 236 ~~d~~i~v~d~~~~~------------------------------~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~i 285 (403)
+-|.+|+|||+..-+ ...+.+|...|+-++|+|.-.+|++|+.|.. |++
T Consensus 154 SLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq-VKl 232 (1202)
T KOG0292|consen 154 SLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKL 232 (1202)
T ss_pred cccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce-eeE
Confidence 689999999986510 1346789999999999999999999999999 999
Q ss_pred EEcCCCcE--EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccc
Q 015650 286 FNTLDGTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL 363 (403)
Q Consensus 286 wd~~~~~~--~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (403)
|.+...+. +.+.++ |.+.|.++-|+|...++++.++|++|+|||++..+.
T Consensus 233 WrmnetKaWEvDtcrg--H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~-------------------------- 284 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRG--HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS-------------------------- 284 (1202)
T ss_pred EEeccccceeehhhhc--ccCCcceEEecCccceeEecCCCccEEEEecccccc--------------------------
Confidence 99875543 334444 778999999999999999999999999999999885
Q ss_pred cceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccC
Q 015650 364 PKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD 401 (403)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~d 401 (403)
+.+++-..++.++++-+|..|.++.|=..
T Consensus 285 ---------v~tfrrendRFW~laahP~lNLfAAgHDs 313 (1202)
T KOG0292|consen 285 ---------VQTFRRENDRFWILAAHPELNLFAAGHDS 313 (1202)
T ss_pred ---------eeeeeccCCeEEEEEecCCcceeeeecCC
Confidence 33455556777888888888866665433
No 43
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-28 Score=198.52 Aligned_cols=273 Identities=15% Similarity=0.227 Sum_probs=209.1
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeee--CCeEEEeeCCCCCCCCC
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQYPL 155 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~~~d~~~~~ 155 (403)
+.+..-.+.|+++.|+++|.+|++++ |+.++|||...++.. +++. .+...+-.+.|. ++.....+...|
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~--~ti~-skkyG~~~~~Fth~~~~~i~sStk~d----- 79 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV--KTIN-SKKYGVDLACFTHHSNTVIHSSTKED----- 79 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCcee--eEee-cccccccEEEEecCCceEEEccCCCC-----
Confidence 44555678899999999999999977 567999999888766 5554 344455555553 344434444345
Q ss_pred ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (403)
.+|+..++.+.+.++-|. |...|..++.+|-+..++ .|++|++||++..++...+.... -.++++.|.|- ++
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GL--if 155 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGL--IF 155 (311)
T ss_pred CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCc--EE
Confidence 899999999999999999 999999999999666555 59999999999877776665433 35677777654 55
Q ss_pred EeeCCccCeEEEEEccC---CceeEEe---ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCccc
Q 015650 232 VCPGLQKGQVRVEHYAS---KRTKFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE 305 (403)
Q Consensus 232 ~~~g~~d~~i~v~d~~~---~~~~~~~---~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~ 305 (403)
|. +...+.|++||++. +....+. +.....+.|.|+|||++|+.+...+. +++.|.-+|..+.++........
T Consensus 156 A~-~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~~lDAf~G~~~~tfs~~~~~~~ 233 (311)
T KOG1446|consen 156 AL-ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IYLLDAFDGTVKSTFSGYPNAGN 233 (311)
T ss_pred EE-ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EEEEEccCCcEeeeEeeccCCCC
Confidence 54 33445999999987 4444443 34667899999999999999999998 99999999999999887543332
Q ss_pred -EEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEE-eCCCc
Q 015650 306 -IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL-VEGSP 383 (403)
Q Consensus 306 -v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 383 (403)
-.+..|+||++++++|+.||+|++|++++++. +..+++ +.+++
T Consensus 234 ~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~-----------------------------------v~~~~~~~~~~~ 278 (311)
T KOG1446|consen 234 LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK-----------------------------------VAVLRGPNGGPV 278 (311)
T ss_pred cceeEEECCCCcEEEEecCCCcEEEEEcCCCcE-----------------------------------eeEecCCCCCCc
Confidence 25778999999999999999999999999885 333444 35678
Q ss_pred eEEEeccCCCEEEEEcc
Q 015650 384 YIVAFGHQKNTVVILGM 400 (403)
Q Consensus 384 ~~~~fs~d~~~l~~~~~ 400 (403)
.++.|.|..-.+++++.
T Consensus 279 ~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 279 SCVRFNPRYAMFVSASS 295 (311)
T ss_pred cccccCCceeeeeecCc
Confidence 88888888887777764
No 44
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=4.7e-30 Score=206.36 Aligned_cols=236 Identities=13% Similarity=0.184 Sum_probs=203.0
Q ss_pred cCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC-CceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEE
Q 015650 126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYN 200 (403)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d 200 (403)
.+|...|..+.|+|++.++++++.| ..|.+|++.. -+....++ |.+.|..+.|.+|+..++ .|.+|+.||
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~D-----r~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSD-----RAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCc-----ceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 3899999999999999999999999 9999999543 35556666 999999999999999888 599999999
Q ss_pred cCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCC
Q 015650 201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG 280 (403)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg 280 (403)
.++|++++.+++|..-+..+. |...+..++++|+.|+++++||++.+...........++++.|..++..+.+|+-|+
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred cccceeeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence 999999999999998888777 555666778889999999999999877666666677899999999999999999999
Q ss_pred cEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccc
Q 015650 281 TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIK 360 (403)
Q Consensus 281 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (403)
. |++||++....+..+.+ |...|+.|..+++|.++.+-+.|.++++||++-.-+-
T Consensus 197 ~-ikvWd~r~~d~~~~lsG--h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~---------------------- 251 (338)
T KOG0265|consen 197 D-IKVWDLRKNDGLYTLSG--HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS---------------------- 251 (338)
T ss_pred c-eeeeccccCcceEEeec--ccCceeeEEeccCCCccccccccceEEEEEecccCCC----------------------
Confidence 9 99999999999999997 6789999999999999999999999999999876641
Q ss_pred ccccceeeeeeeeEEEEEe----CCCceEEEeccCCCEEEEEccCC
Q 015650 361 GVLPKYFSSEWSVAQFRLV----EGSPYIVAFGHQKNTVVILGMDG 402 (403)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~fs~d~~~l~~~~~dG 402 (403)
.+++..++++ +.....++|||++..+..|+.|.
T Consensus 252 ---------~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr 288 (338)
T KOG0265|consen 252 ---------QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR 288 (338)
T ss_pred ---------CceEEEeecchhhhhhhcceeeccCCCCccccccccc
Confidence 2223323333 23455689999999999999885
No 45
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.2e-29 Score=214.97 Aligned_cols=271 Identities=17% Similarity=0.209 Sum_probs=221.2
Q ss_pred CCCCeEEEEEcCCCCE-EEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEE
Q 015650 84 PPPTLLHISFNQDHGC-FAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (403)
Q Consensus 84 ~~~~i~~i~~s~d~~~-l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd 162 (403)
..+.|.+++|+|...+ +|+.+.-.+.||+..+.... +.+. .-...+.+..|..||..++.|+.. |.|+|||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~--k~~s-rFk~~v~s~~fR~DG~LlaaGD~s-----G~V~vfD 96 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVR--KTFS-RFKDVVYSVDFRSDGRLLAAGDES-----GHVKVFD 96 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhh--hhHH-hhccceeEEEeecCCeEEEccCCc-----CcEEEec
Confidence 3467999999996644 77777888999997655433 3343 355789999999999999999998 9999999
Q ss_pred CCCCceeEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650 163 DHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (403)
Q Consensus 163 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 237 (403)
+++...++.+. |..++..+.|+|+...++ -|+.+++||+.+......+.+|.+.+.+.+++|..+++++ +|+.
T Consensus 97 ~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivv--tGsY 174 (487)
T KOG0310|consen 97 MKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVV--TGSY 174 (487)
T ss_pred cccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEE--ecCC
Confidence 87777778887 999999999999765555 2678999999998876688999999999999998886533 4779
Q ss_pred cCeEEEEEccCC-ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCC
Q 015650 238 KGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ 316 (403)
Q Consensus 238 d~~i~v~d~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~ 316 (403)
||.|++||.+.. ....-..|..+|..+.+-|.|..+++++.+. |+|||+.+|..+..... .|...|+|+.+..++.
T Consensus 175 Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~--vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~ 251 (487)
T KOG0310|consen 175 DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNS--VKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDST 251 (487)
T ss_pred CceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCe--EEEEEecCCceehhhhh-cccceEEEEEeecCCc
Confidence 999999999986 4444557999999999999999999988664 99999986554433332 2778999999999999
Q ss_pred EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEE
Q 015650 317 WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVV 396 (403)
Q Consensus 317 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~ 396 (403)
.|++++-|+.|++||+.+-+. +..++. .++|..++.+||++.++
T Consensus 252 rLlS~sLD~~VKVfd~t~~Kv-----------------------------------v~s~~~-~~pvLsiavs~dd~t~v 295 (487)
T KOG0310|consen 252 RLLSGSLDRHVKVFDTTNYKV-----------------------------------VHSWKY-PGPVLSIAVSPDDQTVV 295 (487)
T ss_pred eEeecccccceEEEEccceEE-----------------------------------EEeeec-ccceeeEEecCCCceEE
Confidence 999999999999999877662 111222 45888999999999999
Q ss_pred EEccCCC
Q 015650 397 ILGMDGR 403 (403)
Q Consensus 397 ~~~~dG~ 403 (403)
+|-.||.
T Consensus 296 iGmsnGl 302 (487)
T KOG0310|consen 296 IGMSNGL 302 (487)
T ss_pred Eecccce
Confidence 9999983
No 46
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.8e-29 Score=225.92 Aligned_cols=273 Identities=14% Similarity=0.175 Sum_probs=235.2
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceE
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i 158 (403)
-...+|...|.+++++.|...+++|..+.++||+.++.++. +++. ...+.+..|-|...+++.|... |.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kci--RTi~---~~y~l~~~Fvpgd~~Iv~G~k~-----Gel 436 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCI--RTIT---CGYILASKFVPGDRYIVLGTKN-----GEL 436 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCccee--EEec---cccEEEEEecCCCceEEEeccC-----Cce
Confidence 45789999999999999999999999899999999988877 6664 2378888999999999999988 999
Q ss_pred EEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCC-----ceee--------eEeeccCCCceeEE
Q 015650 159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD-----LKLL--------HQIETIANPKGLCA 221 (403)
Q Consensus 159 ~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~-----~~~~--------~~~~~~~~~~~~~~ 221 (403)
.+||+.....+.+++ |.+.|..++..||+..++ .|.+|++||+.- +... +++ .....+.++.
T Consensus 437 ~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~ 515 (888)
T KOG0306|consen 437 QVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVS 515 (888)
T ss_pred EEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEE
Confidence 999999999998888 999999999999988777 599999999752 1111 112 2345677888
Q ss_pred EeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC
Q 015650 222 VSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG 300 (403)
Q Consensus 222 ~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~ 300 (403)
++||+.. ++. +--|.+++||-+++-+ ...+.+|.-+|.||.++||+++++||+.|.+ |+||-+.=|.|-+.+-.
T Consensus 516 ~Spdgk~--LaV-sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn-VKiWGLdFGDCHKS~fA- 590 (888)
T KOG0306|consen 516 VSPDGKL--LAV-SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN-VKIWGLDFGDCHKSFFA- 590 (888)
T ss_pred EcCCCcE--EEE-EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc-eEEeccccchhhhhhhc-
Confidence 9998874 443 4589999999999844 5668999999999999999999999999999 99999999999998886
Q ss_pred CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeC
Q 015650 301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE 380 (403)
Q Consensus 301 ~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (403)
|...|.++.|-|+...+.+++.|+.|+-||-+..+. +..+.+|.
T Consensus 591 -HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~-----------------------------------iq~L~~H~ 634 (888)
T KOG0306|consen 591 -HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEE-----------------------------------IQKLDGHH 634 (888)
T ss_pred -ccCceeEEEEcccceeEEEecCcceEEeechhhhhh-----------------------------------heeeccch
Confidence 778999999999999999999999999999988875 44466777
Q ss_pred CCceEEEeccCCCEEEEEccCCC
Q 015650 381 GSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 381 ~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
..+++++.+|+|.++++++.|.+
T Consensus 635 ~ev~cLav~~~G~~vvs~shD~s 657 (888)
T KOG0306|consen 635 SEVWCLAVSPNGSFVVSSSHDKS 657 (888)
T ss_pred heeeeeEEcCCCCeEEeccCCce
Confidence 88999999999999999999864
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3.3e-29 Score=230.70 Aligned_cols=243 Identities=19% Similarity=0.301 Sum_probs=207.8
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (403)
..+.+|...|+.++|+||++++++++++ +|+|||+... ....+.+. +|...+.+++|++++..+++++.| ++
T Consensus 197 ~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D-----~t 269 (456)
T KOG0266|consen 197 RELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDD-----GT 269 (456)
T ss_pred ccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC-CeEEEEec-CCCCceEEEEecCCCCEEEEecCC-----Cc
Confidence 4458899999999999999999999855 5999999333 23337787 899999999999999999999999 99
Q ss_pred EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCce--eeeEeeccCCC--ceeEEEeeCCCeE
Q 015650 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK--LLHQIETIANP--KGLCAVSQGVGSL 229 (403)
Q Consensus 158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~ 229 (403)
|+|||+++++++..+. |...|.+++|++++.+++ .|+.|++||+.++. ++..+..+... +..+.++|+++.+
T Consensus 270 vriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~l 349 (456)
T KOG0266|consen 270 VRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYL 349 (456)
T ss_pred EEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEE
Confidence 9999999999999999 999999999999999998 49999999999998 55666655554 8899999998865
Q ss_pred EEEeeCCccCeEEEEEccC-CceeEEeecCCc---eEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCccc
Q 015650 230 VLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSR---IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE 305 (403)
Q Consensus 230 ~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~---i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~ 305 (403)
+.+ ..|+.+++||++. .....+.+|... +.+..+++.+.++++|+.|+. |++||+.++..+..+.++. ...
T Consensus 350 l~~---~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~-v~~~~~~s~~~~~~l~~h~-~~~ 424 (456)
T KOG0266|consen 350 LSA---SLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS-VYVWDSSSGGILQRLEGHS-KAA 424 (456)
T ss_pred EEe---cCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCce-EEEEeCCccchhhhhcCCC-CCc
Confidence 554 3889999999997 445667777664 444556789999999999999 9999999999888888732 788
Q ss_pred EEEEEeCCCCCEEEEEe--CCCcEEEEEee
Q 015650 306 IYSLAFSSNAQWLAVSS--DKGTVHVFNLK 333 (403)
Q Consensus 306 v~~l~~s~d~~~l~s~~--~dg~v~iwd~~ 333 (403)
+..+.++|...++++++ .|+.+++|..+
T Consensus 425 ~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 425 VSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999999999998 79999999764
No 48
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.9e-29 Score=225.54 Aligned_cols=246 Identities=17% Similarity=0.281 Sum_probs=194.2
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCC----------------------------ee-E---------
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF----------------------------RE-I--------- 119 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~----------------------------~~-~--------- 119 (403)
.+...|.+.|++|.|++||+|||+|+.++ |+||.+... .. .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 34448999999999999999999999666 999987440 00 0
Q ss_pred --------------------EEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCcee
Q 015650 120 --------------------FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVR 179 (403)
Q Consensus 120 --------------------~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~ 179 (403)
....+ .+|...|.++.|+.++. |.+++.| .+|++|++...++++.|.|..-|+
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn~f-LLSSSMD-----KTVRLWh~~~~~CL~~F~HndfVT 413 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKNNF-LLSSSMD-----KTVRLWHPGRKECLKVFSHNDFVT 413 (712)
T ss_pred cccCCccccCCCccccccccchhhh-hccchhheecccccCCe-eEecccc-----ccEEeecCCCcceeeEEecCCeeE
Confidence 00111 58999999999998875 5566677 999999999999999999999999
Q ss_pred EEEEec-CceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE--
Q 015650 180 SVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-- 253 (403)
Q Consensus 180 ~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~-- 253 (403)
||+|+| |.++++ .|+.|+||++...+.+.-. ....-|+.+++.|+|+..++ |+.+|.+++|+....++..
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avI---Gt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVI---GTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCcCeeEeeh-hhhhhheeEEeccCCceEEE---EEeccEEEEEEccCCeEEEee
Confidence 999999 566666 5999999999876655443 34578999999999986555 4589999999998855432
Q ss_pred -Eeec------CCceEEEEEcCCC-CEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 015650 254 -IMAH------DSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG 325 (403)
Q Consensus 254 -~~~~------~~~i~~~~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg 325 (403)
+..| ...|+.+.|.|.. ..+++.+.|.. |+|+|.++..++..|++......-....|+.||++|+++++|.
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSr-IRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSR-IRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCCCc-eEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence 1111 2279999999743 34666788998 9999999999999998754444556788999999999999999
Q ss_pred cEEEEEeecCC
Q 015650 326 TVHVFNLKVNS 336 (403)
Q Consensus 326 ~v~iwd~~~~~ 336 (403)
.|+||+++...
T Consensus 569 ~VYiW~~~~~~ 579 (712)
T KOG0283|consen 569 WVYIWKNDSFN 579 (712)
T ss_pred eEEEEeCCCCc
Confidence 99999985443
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8e-29 Score=217.48 Aligned_cols=257 Identities=15% Similarity=0.212 Sum_probs=221.9
Q ss_pred CCCCCCCCccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCC
Q 015650 70 QMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG 148 (403)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~ 148 (403)
.+.++....+.+.-...+|.+..|-....++++|+|+. ||||+.++.+++ ..|+ .|...|.+++.+|...++.+++
T Consensus 40 WnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV--~~Fe-AH~DyIR~iavHPt~P~vLtsS 116 (794)
T KOG0276|consen 40 WNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV--KTFE-AHSDYIRSIAVHPTLPYVLTSS 116 (794)
T ss_pred EecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceee--EEee-ccccceeeeeecCCCCeEEecC
Confidence 34445455566666778899999999999999999877 999999999887 7787 8999999999999999999999
Q ss_pred CCCCCCCceEEEEECCCC-ceeEEEe-cCCceeEEEEecC-ceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEE
Q 015650 149 PDPQYPLNKVMIWDDHQS-RCIGELS-FRSEVRSVKLRRD-RIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAV 222 (403)
Q Consensus 149 ~d~~~~~~~i~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~-~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 222 (403)
+| -.|++||.+.+ .+.++++ |..-|.+++|+|. ...++ .|++|++|.+....+..++++|...+.++.+
T Consensus 117 DD-----m~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdy 191 (794)
T KOG0276|consen 117 DD-----MTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDY 191 (794)
T ss_pred Cc-----cEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEe
Confidence 99 99999999876 6778888 9999999999994 44444 5999999999999999999999999999999
Q ss_pred eeCCCeEEEEeeCCccCeEEEEEccCC-ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC
Q 015650 223 SQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA 301 (403)
Q Consensus 223 ~~~~~~~~~~~~g~~d~~i~v~d~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~ 301 (403)
-+.++.-++++ |..|..|+|||..++ +++++.+|...|..+.|+|.-.++++|++||+ |+||+..+-+...++.-
T Consensus 192 y~~gdkpylIs-gaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT-vriWhs~Ty~lE~tLn~-- 267 (794)
T KOG0276|consen 192 YTGGDKPYLIS-GADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT-VRIWNSKTYKLEKTLNY-- 267 (794)
T ss_pred ccCCCcceEEe-cCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCcc-EEEecCcceehhhhhhc--
Confidence 99999988887 669999999999994 56789999999999999999999999999999 99999988888777765
Q ss_pred CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCC
Q 015650 302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (403)
Q Consensus 302 ~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~ 339 (403)
.-+.|++|+-.+.+..++.|.++|.| +..+-..++..
T Consensus 268 gleRvW~I~~~k~~~~i~vG~Deg~i-~v~lgreeP~v 304 (794)
T KOG0276|consen 268 GLERVWCIAAHKGDGKIAVGFDEGSV-TVKLGREEPAV 304 (794)
T ss_pred CCceEEEEeecCCCCeEEEeccCCcE-EEEccCCCCce
Confidence 34789999999998999999877765 44555555433
No 50
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=9e-30 Score=212.98 Aligned_cols=276 Identities=14% Similarity=0.186 Sum_probs=227.0
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (403)
..+..|.+.+..+.|-++...|++|+ |..|++|++...+..+..++. +....+.++.|.+++..+++.+.| +.
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas~d-----~~ 242 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAASND-----KN 242 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeecCC-----Cc
Confidence 56778999999999999988999887 666999999877765667776 778899999999999999999998 99
Q ss_pred EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (403)
Q Consensus 158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (403)
+++|++...+...++. |.+.|+++.|......++ .|.+|++||+....+.+++-. ...+..++.+. ....
T Consensus 243 ~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~~-----~~~~ 316 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCSI-----SDVI 316 (459)
T ss_pred eeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEecc-----eeee
Confidence 9999999999999999 999999999988766455 589999999999888777643 22334444442 2344
Q ss_pred eCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC--CcccEEEEEe
Q 015650 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA--DRAEIYSLAF 311 (403)
Q Consensus 234 ~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~--~~~~v~~l~~ 311 (403)
+|..|+.|++||.+.........-.+.|+++..+++|..|.+++.|.+ +.+.|+++.+....+.... .....+.+.|
T Consensus 317 SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 317 SGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDT-LKVIDLRTKEIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred ecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCc-eeeeecccccEEEEeeccccccccccceeEE
Confidence 577999999999998766555555569999999999999999999999 9999999998888776422 2235889999
Q ss_pred CCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCC--CceEEEec
Q 015650 312 SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG--SPYIVAFG 389 (403)
Q Consensus 312 s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fs 389 (403)
||++.|+++|+.||.|+||++.+++.+.. ++.... .+++++|.
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~tgKlE~~-----------------------------------l~~s~s~~aI~s~~W~ 440 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFTGKLEKV-----------------------------------LSLSTSNAAITSLSWN 440 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccCceEEEE-----------------------------------eccCCCCcceEEEEEc
Confidence 99999999999999999999999985322 222222 59999999
Q ss_pred cCCCEEEEEccCC
Q 015650 390 HQKNTVVILGMDG 402 (403)
Q Consensus 390 ~d~~~l~~~~~dG 402 (403)
|-|..|++++.++
T Consensus 441 ~sG~~Llsadk~~ 453 (459)
T KOG0288|consen 441 PSGSGLLSADKQK 453 (459)
T ss_pred CCCchhhcccCCc
Confidence 9999999988765
No 51
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.5e-28 Score=211.14 Aligned_cols=278 Identities=14% Similarity=0.194 Sum_probs=204.4
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEE--EecccCcceeEEEEeeeCC--eEEEeeCCCCCCC
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFR--RDFERGGGIGVVEMLFRCN--ILALVGGGPDPQY 153 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~~~s~~~d~~~ 153 (403)
..+.+|+..|+++++.|.|..|++|+ |..|++||+........ +.+.......|.++.|++. .++++++.
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~----- 235 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS----- 235 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC-----
Confidence 45778889999999999999999999 77799999975543221 2333234445666777664 44555555
Q ss_pred CCceEEEEECCCCceeEEE-------------e-cCCceeEEEEecCceE--EE--ecCeEEEEEcCCc-eeeeEeec--
Q 015650 154 PLNKVMIWDDHQSRCIGEL-------------S-FRSEVRSVKLRRDRII--VV--LEQKIFVYNFADL-KLLHQIET-- 212 (403)
Q Consensus 154 ~~~~i~iwd~~~~~~~~~~-------------~-~~~~i~~~~~~~~~~~--~~--~d~~i~i~d~~~~-~~~~~~~~-- 212 (403)
...+|+| +.|..+.++ + |...+++.+|+|+.+- +. .||+++|||+... +.++.++.
T Consensus 236 --aqakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 236 --AQAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred --cceeEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence 5789998 444322221 1 6667899999997553 33 5999999999764 33344432
Q ss_pred ---cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc----eeEEeecCC--ceEEEEEcCCCCEEEEEeCCCcEE
Q 015650 213 ---IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDS--RIACFALTQDGQLLATSSTKGTLV 283 (403)
Q Consensus 213 ---~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~----~~~~~~~~~--~i~~~~~sp~g~~l~s~~~dg~~i 283 (403)
..-++..|+|++++.. +| +|..||.|.+|+....- ...-.+|.. .|+||.||+||++|++-+.|++ +
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~--iA-agc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-L 388 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKL--IA-AGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-L 388 (641)
T ss_pred CCCcccCceeeecCCCcch--hh-hcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-e
Confidence 2345678999999874 44 36799999999986632 334567877 8999999999999999999999 9
Q ss_pred EEEEcCCC-cEEEEEecCCCcccEEEEEeCCCCCEEEEEe------CCCcEEEEEeecCCCCCCCCCCCCCCCCCccccc
Q 015650 284 RIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSS------DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL 356 (403)
Q Consensus 284 ~iwd~~~~-~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (403)
++||++.. +++....+-...-+-+.++|||+.++|++|. ..|.+++||..+.+.
T Consensus 389 KvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~------------------- 449 (641)
T KOG0772|consen 389 KVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT------------------- 449 (641)
T ss_pred eeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee-------------------
Confidence 99999875 4555544433344678899999999999986 356799999888774
Q ss_pred ccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 357 SFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
+.++.....+|..+.|+|.-|.|++|+.||+
T Consensus 450 ----------------v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 450 ----------------VYKIDISTASVVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred ----------------EEEecCCCceEEEEeecchhhheeeecCCCc
Confidence 3345555678888999999999999999995
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.4e-28 Score=220.04 Aligned_cols=252 Identities=17% Similarity=0.270 Sum_probs=214.1
Q ss_pred CCCCCCCccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCC
Q 015650 71 MPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP 149 (403)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~ 149 (403)
+........-|.+|.++|..+.|+|.+.++++|+|+. |+||+....+++ .++. +|-..|..+.|++..-+++++++
T Consensus 37 DYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl--ftL~-GHlDYVRt~~FHheyPWIlSASD 113 (1202)
T KOG0292|consen 37 DYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL--FTLL-GHLDYVRTVFFHHEYPWILSASD 113 (1202)
T ss_pred hhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh--hhhc-cccceeEEeeccCCCceEEEccC
Confidence 3344444467899999999999999999999999776 999999877766 6676 89999999999999999999999
Q ss_pred CCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCce--------------------
Q 015650 150 DPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK-------------------- 205 (403)
Q Consensus 150 d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~-------------------- 205 (403)
| .+|+||+..+++++..+. |...|.|..|+|...+++ .|.+|++||+...+
T Consensus 114 D-----QTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~ 188 (1202)
T KOG0292|consen 114 D-----QTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNS 188 (1202)
T ss_pred C-----CeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccch
Confidence 9 999999999999999999 999999999999776666 49999999986311
Q ss_pred ---------eeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc---eeEEeecCCceEEEEEcCCCCEE
Q 015650 206 ---------LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQDGQLL 273 (403)
Q Consensus 206 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~---~~~~~~~~~~i~~~~~sp~g~~l 273 (403)
..+.+++|...+.-++|+|.-. +++ +|+.|..|++|.+...+ +.+..+|.+.|.++-|+|...++
T Consensus 189 dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp--liV-SG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lI 265 (1202)
T KOG0292|consen 189 DLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP--LIV-SGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLI 265 (1202)
T ss_pred hhcCCcCeeeeeeecccccccceEEecCCcc--eEE-ecCCcceeeEEEeccccceeehhhhcccCCcceEEecCcccee
Confidence 1234577888888899988654 444 47799999999988744 45567999999999999999999
Q ss_pred EEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650 274 ATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 274 ~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
++.++|++ |+|||+...+.+++++. .....+.++-+|..+++++|- |+-+.+|.++...+
T Consensus 266 lSnsEDks-irVwDm~kRt~v~tfrr--endRFW~laahP~lNLfAAgH-DsGm~VFkleRErp 325 (1202)
T KOG0292|consen 266 LSNSEDKS-IRVWDMTKRTSVQTFRR--ENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERP 325 (1202)
T ss_pred EecCCCcc-EEEEecccccceeeeec--cCCeEEEEEecCCcceeeeec-CCceEEEEEcccCc
Confidence 99999999 99999999999999986 457899999999999887764 66688999886554
No 53
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.1e-27 Score=209.18 Aligned_cols=239 Identities=21% Similarity=0.344 Sum_probs=204.6
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (403)
.....|...+..+.|++++++|++++ ++.|++|++...+.. ..+. .+...+.++.|.+++..+++++.+ +.
T Consensus 45 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-----~~ 116 (289)
T cd00200 45 RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV--RTLT-GHTSYVSSVAFSPDGRILSSSSRD-----KT 116 (289)
T ss_pred EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce--EEEe-ccCCcEEEEEEcCCCCEEEEecCC-----Ce
Confidence 45567888899999999999998888 555999999876544 3444 577789999999988888888877 99
Q ss_pred EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE--e-cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (403)
Q Consensus 158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (403)
|++||+.+++.+..+. |...+.++.|+|++.+++ . ++.|++||+++++.+..+..+...+..+.++++++.++++
T Consensus 117 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~- 195 (289)
T cd00200 117 IKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSS- 195 (289)
T ss_pred EEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEe-
Confidence 9999999888888888 888999999999887777 3 8999999999888888888888889999999988655443
Q ss_pred eCCccCeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeC
Q 015650 234 PGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312 (403)
Q Consensus 234 ~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s 312 (403)
+ .++.|++||++.... ..+..|...+.++.|+|++.++++++.++. |++||+.+++.+..+.. |...|.+++|+
T Consensus 196 -~-~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~~~~~~--~~~~i~~~~~~ 270 (289)
T cd00200 196 -S-SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLSG--HTNSVTSLAWS 270 (289)
T ss_pred -c-CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCCceeEEEccc--cCCcEEEEEEC
Confidence 3 589999999987544 445588889999999999999988888999 99999999988888874 66789999999
Q ss_pred CCCCEEEEEeCCCcEEEEE
Q 015650 313 SNAQWLAVSSDKGTVHVFN 331 (403)
Q Consensus 313 ~d~~~l~s~~~dg~v~iwd 331 (403)
+++++|++++.||.|++|+
T Consensus 271 ~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 271 PDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCCEEEEecCCCeEEecC
Confidence 9999999999999999996
No 54
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.7e-28 Score=195.98 Aligned_cols=285 Identities=17% Similarity=0.177 Sum_probs=208.6
Q ss_pred CCCCCCccccCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEEeccc-CcceeEEEEeeeCCeEEEe-eCC
Q 015650 72 PLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFER-GGGIGVVEMLFRCNILALV-GGG 148 (403)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~-s~~ 148 (403)
...+.....+.+|...|++++|+.||++||++++ +.|+||+++.......+.+.. -.....+.+.|.||...++ +..
T Consensus 73 f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 73 FVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred cccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc
Confidence 3444555789999999999999999999999985 459999997654332222210 1122456778888865433 333
Q ss_pred CCCCCCCceEEEEECCCC---ceeE--------EEe--cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeec
Q 015650 149 PDPQYPLNKVMIWDDHQS---RCIG--------ELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIET 212 (403)
Q Consensus 149 ~d~~~~~~~i~iwd~~~~---~~~~--------~~~--~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~ 212 (403)
+. .++++|.+... .... .+. |.-.+..+-....+.+++ .|..|.+|+++ |+.+..+..
T Consensus 153 ~g-----~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt 226 (420)
T KOG2096|consen 153 RG-----NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT 226 (420)
T ss_pred cC-----CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc
Confidence 44 78999976432 1111 122 556677788888888888 48899999998 999999988
Q ss_pred cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC---------CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEE
Q 015650 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLV 283 (403)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~---------~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i 283 (403)
.....+..+++|+|+ +++++| --..|++|..-- .+...+.+|...|..++|+++...+++.+.||+ +
T Consensus 227 nq~~n~~aavSP~GR--Fia~~g-FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-w 302 (420)
T KOG2096|consen 227 NQSSNYDAAVSPDGR--FIAVSG-FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-W 302 (420)
T ss_pred ccccccceeeCCCCc--EEEEec-CCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc-E
Confidence 877888899999988 555555 567899998643 334568899999999999999999999999999 9
Q ss_pred EEEEcCC-------CcEEEEEecC--CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccc
Q 015650 284 RIFNTLD-------GTLLQEVRRG--ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS 354 (403)
Q Consensus 284 ~iwd~~~-------~~~~~~~~~~--~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 354 (403)
+|||+.- .+.+++.... .-.+.-..++.+|.|+.||.+. ...|++|..++++.++.+
T Consensus 303 riwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~------------- 368 (420)
T KOG2096|consen 303 RIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPEL------------- 368 (420)
T ss_pred EEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhH-------------
Confidence 9999742 2222222111 1123344899999999998764 557999999998864443
Q ss_pred ccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccC
Q 015650 355 SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD 401 (403)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~d 401 (403)
-+.|++.+++++|+++|++++++++.
T Consensus 369 ---------------------e~~h~~~Is~is~~~~g~~~atcGdr 394 (420)
T KOG2096|consen 369 ---------------------EDIHSTTISSISYSSDGKYIATCGDR 394 (420)
T ss_pred ---------------------HHhhcCceeeEEecCCCcEEeeecce
Confidence 25678899999999999999998863
No 55
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.7e-28 Score=191.35 Aligned_cols=238 Identities=18% Similarity=0.255 Sum_probs=197.6
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceE
Q 015650 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (403)
Q Consensus 80 ~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i 158 (403)
.-.+|+..|.+++|+|.|++||+++ |.++.||.-...+-.+...++ +|...|-+++|+.++.+|+++++| +.|
T Consensus 56 ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lE-GHEnEVK~Vaws~sG~~LATCSRD-----KSV 129 (312)
T KOG0645|consen 56 LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLE-GHENEVKCVAWSASGNYLATCSRD-----KSV 129 (312)
T ss_pred ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeee-ccccceeEEEEcCCCCEEEEeeCC-----CeE
Confidence 3457999999999999999999999 777999997766666678887 999999999999999999999999 999
Q ss_pred EEEECCCC---ceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcC---CceeeeEeeccCCCceeEEEeeCCCe
Q 015650 159 MIWDDHQS---RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA---DLKLLHQIETIANPKGLCAVSQGVGS 228 (403)
Q Consensus 159 ~iwd~~~~---~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (403)
.||.+..+ +++..++ |...|..+.|+|..-+|+ .|++|++|+-. ..++++++.+|...+.+++|.+.+..
T Consensus 130 WiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~r 209 (312)
T KOG0645|consen 130 WIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSR 209 (312)
T ss_pred EEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCce
Confidence 99998754 5667777 999999999999877777 59999999876 24789999999999999999999876
Q ss_pred EEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC------cEEEEEecCCC
Q 015650 229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG------TLLQEVRRGAD 302 (403)
Q Consensus 229 ~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~------~~~~~~~~~~~ 302 (403)
+..+ ++|++++||..... .-..|...++.+.|. ...|++++.|+. |++|.-... +.+.... +.|
T Consensus 210 l~s~---sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~IaS~ggD~~-i~lf~~s~~~d~p~~~l~~~~~-~aH 279 (312)
T KOG0645|consen 210 LVSC---SDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVIASGGGDDA-IRLFKESDSPDEPSWNLLAKKE-GAH 279 (312)
T ss_pred EEEe---cCCcceEeeeeccC---cchhcccceEeeeec--ccceEeccCCCE-EEEEEecCCCCCchHHHHHhhh-ccc
Confidence 4433 58999999986622 123477889999998 447999999999 999975532 1222222 347
Q ss_pred cccEEEEEeCCC-CCEEEEEeCCCcEEEEEee
Q 015650 303 RAEIYSLAFSSN-AQWLAVSSDKGTVHVFNLK 333 (403)
Q Consensus 303 ~~~v~~l~~s~d-~~~l~s~~~dg~v~iwd~~ 333 (403)
...|++++|.|. ..+|++|++||.|++|.+.
T Consensus 280 e~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 280 EVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 789999999995 6789999999999999885
No 56
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.7e-29 Score=202.85 Aligned_cols=280 Identities=14% Similarity=0.236 Sum_probs=231.0
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecc-----cCcceeEEEEeeeCCeEEEeeCCCCCC
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-----RGGGIGVVEMLFRCNILALVGGGPDPQ 152 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~s~~~d~~ 152 (403)
.+--+..+.+-|..|+|||++|++|+-+| |.+|+..+++......++ --+...|.++.|+.|...+++|+.|
T Consensus 207 ~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD-- 284 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD-- 284 (508)
T ss_pred heecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC--
Confidence 44455667788999999999999999666 999999776543111111 1356789999999999999999999
Q ss_pred CCCceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650 153 YPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (403)
Q Consensus 153 ~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (403)
|.|++|.+++|.+++.|. |...|+++.|+.|+..+. .|.++++.-+..|++++++++|...+....|.++|.
T Consensus 285 ---GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~ 361 (508)
T KOG0275|consen 285 ---GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGH 361 (508)
T ss_pred ---CcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCC
Confidence 999999999999999998 999999999999988777 589999999999999999999999999999999998
Q ss_pred eEEEEeeCCccCeEEEEEccCCce-eEEe--ecCCceEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC-C
Q 015650 228 SLVLVCPGLQKGQVRVEHYASKRT-KFIM--AHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-D 302 (403)
Q Consensus 228 ~~~~~~~g~~d~~i~v~d~~~~~~-~~~~--~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-~ 302 (403)
.++.+ +.||+|++|+..+..+ .+++ +...+|.++-.-| +...++.+...++ |+|.++ .|+.++.+..+. .
T Consensus 362 ~iisa---SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsnt-v~imn~-qGQvVrsfsSGkRE 436 (508)
T KOG0275|consen 362 HIISA---SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNT-VYIMNM-QGQVVRSFSSGKRE 436 (508)
T ss_pred eEEEe---cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCe-EEEEec-cceEEeeeccCCcc
Confidence 76544 4799999999988543 3443 3456788887777 4567888888888 999997 688888887543 2
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCC
Q 015650 303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGS 382 (403)
Q Consensus 303 ~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (403)
.+...+...||.|.++.+.++|+.++.|.+.+++.++ .+..|+..
T Consensus 437 gGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~-----------------------------------tl~VhEkd 481 (508)
T KOG0275|consen 437 GGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLER-----------------------------------TLPVHEKD 481 (508)
T ss_pred CCceEEEEecCCCcEEEEEccCcEEEEEEeecCceee-----------------------------------eeeccccc
Confidence 2456677899999999999999999999999998532 24566777
Q ss_pred ceEEEeccCCCEEEEEccCCC
Q 015650 383 PYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 383 ~~~~~fs~d~~~l~~~~~dG~ 403 (403)
+-.++-+|..+.|++=++||.
T Consensus 482 vIGl~HHPHqNllAsYsEDgl 502 (508)
T KOG0275|consen 482 VIGLTHHPHQNLLASYSEDGL 502 (508)
T ss_pred ccccccCcccchhhhhcccch
Confidence 888999999999999999984
No 57
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.3e-28 Score=202.56 Aligned_cols=205 Identities=15% Similarity=0.195 Sum_probs=185.1
Q ss_pred EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEE
Q 015650 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIF 197 (403)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~ 197 (403)
+.+. +|...|.++++.|...++++++.| ++|+|||+.+|++..++. |...|..+++++-..|++ .|+.|+
T Consensus 145 rVi~-gHlgWVr~vavdP~n~wf~tgs~D-----rtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 145 RVIS-GHLGWVRSVAVDPGNEWFATGSAD-----RTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred hhhh-hccceEEEEeeCCCceeEEecCCC-----ceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 4444 899999999999999999999999 999999999999999999 999999999999988888 489999
Q ss_pred EEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC-ceeEEeecCCceEEEEEcCCCCEEEEE
Q 015650 198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATS 276 (403)
Q Consensus 198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~s~ 276 (403)
.||++..+.++.+.+|-..+.++.++|.-+ .+++ |+.|..++|||++++ .+..+.+|..+|..+.+.|-...+++|
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTld--vl~t-~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLD--VLVT-GGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccce--eEEe-cCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence 999999999999999999999999998766 3444 458999999999994 567889999999999999977789999
Q ss_pred eCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCC
Q 015650 277 STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (403)
Q Consensus 277 ~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~ 339 (403)
+.|++ |++||+..|+...++.. |...|.+++.+|....+|+++.|. |+-|++..++-..
T Consensus 296 S~D~t-vrlWDl~agkt~~tlt~--hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~ 354 (460)
T KOG0285|consen 296 SHDST-VRLWDLRAGKTMITLTH--HKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQ 354 (460)
T ss_pred cCCce-EEEeeeccCceeEeeec--ccceeeEEecCCchhhhhccCCcc-ceeccCCccchhh
Confidence 99999 99999999999888885 778999999999999999998874 9999999988543
No 58
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.8e-28 Score=219.16 Aligned_cols=246 Identities=11% Similarity=0.178 Sum_probs=208.7
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCee--EEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCC
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE--IFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYP 154 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~ 154 (403)
.+..+|++.|.++....+|-+|++|+ |+.+++|.++.+.. .+.... .+|...|.+++++.. ..++++++.|
T Consensus 359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~-~gH~~svgava~~~~~asffvsvS~D---- 433 (775)
T KOG0319|consen 359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQA-NGHTNSVGAVAGSKLGASFFVSVSQD---- 433 (775)
T ss_pred EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhh-cccccccceeeecccCccEEEEecCC----
Confidence 58899999999999777889999999 66799999844332 222333 378889999888654 4578899999
Q ss_pred CceEEEEECCCCc-----eeE--EE---ecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEE
Q 015650 155 LNKVMIWDDHQSR-----CIG--EL---SFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCA 221 (403)
Q Consensus 155 ~~~i~iwd~~~~~-----~~~--~~---~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 221 (403)
+++++|++...+ .+. .+ .|...|++++++|+..+++ .|.+.+||+++..+...++.+|...+.++.
T Consensus 434 -~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~ 512 (775)
T KOG0319|consen 434 -CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVS 512 (775)
T ss_pred -ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEE
Confidence 999999987622 111 11 1899999999999999999 499999999999999999999999999999
Q ss_pred EeeCCCeEEEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC
Q 015650 222 VSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG 300 (403)
Q Consensus 222 ~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~ 300 (403)
|++.+. ++++ .+.|++|+||.+.+ ..++++.+|...|..+.|-.+|+.|++++.||- |++|++++++|+.++..
T Consensus 513 Fs~~dq--~laT-~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGl-iKlWnikt~eC~~tlD~- 587 (775)
T KOG0319|consen 513 FSKNDQ--LLAT-CSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGL-IKLWNIKTNECEMTLDA- 587 (775)
T ss_pred eccccc--eeEe-ccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCc-EEEEeccchhhhhhhhh-
Confidence 999865 3443 34799999999998 557889999999999999999999999999999 99999999999999996
Q ss_pred CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 301 ~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
|...|++++-++....+++|+.||.|.+|.=.+.+
T Consensus 588 -H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 588 -HNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred -ccceeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence 78999999999999999999999999999754443
No 59
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.7e-29 Score=207.10 Aligned_cols=236 Identities=13% Similarity=0.273 Sum_probs=193.0
Q ss_pred CCccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650 76 PAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (403)
Q Consensus 76 ~~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~ 154 (403)
.-..++.+|++.|.|+.| +.+.+++|+ |.+|+|||+++++.+ .++- +|...|..+.|+.+ ++++++.|
T Consensus 228 ~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l--~tli-hHceaVLhlrf~ng--~mvtcSkD---- 296 (499)
T KOG0281|consen 228 ECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPL--NTLI-HHCEAVLHLRFSNG--YMVTCSKD---- 296 (499)
T ss_pred HHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchh--hHHh-hhcceeEEEEEeCC--EEEEecCC----
Confidence 334789999999999998 456899998 666999999998876 6665 79999999999866 57788888
Q ss_pred CceEEEEECCCCcee---EEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650 155 LNKVMIWDDHQSRCI---GELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (403)
Q Consensus 155 ~~~i~iwd~~~~~~~---~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (403)
.++.+||+.....+ +.+. |...|+.+.|+.. +++ .|.+|++|++.+++.++++.+|...+.++.+. ++
T Consensus 297 -rsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k--yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~r 371 (499)
T KOG0281|consen 297 -RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DR 371 (499)
T ss_pred -ceeEEEeccCchHHHHHHHHhhhhhheeeeccccc--eEEEecCCceEEEEeccceeeehhhhcccccceehhcc--Ce
Confidence 99999998776432 3334 8889999999765 555 58999999999999999999998877666543 22
Q ss_pred eEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE---------EEEE
Q 015650 228 SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL---------LQEV 297 (403)
Q Consensus 228 ~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~---------~~~~ 297 (403)
++ .+|+.|.+|++||+..+. ++.+++|+.-|.|+.| |.+.+++|+.||+ |+|||+..+.. +.++
T Consensus 372 --lv-VSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGk-ikvWdl~aaldpra~~~~~Cl~~l 445 (499)
T KOG0281|consen 372 --LV-VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLQAALDPRAPASTLCLRTL 445 (499)
T ss_pred --EE-EecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccce-EEEEecccccCCcccccchHHHhh
Confidence 34 458899999999999855 5678999999999999 6788999999999 99999987543 3333
Q ss_pred ecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650 298 RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 298 ~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
.. |.+.|..++| |...+++++.|.+|.|||+..+-+
T Consensus 446 v~--hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 446 VE--HSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred hh--ccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 32 7789999999 667899999999999999988764
No 60
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.9e-28 Score=190.97 Aligned_cols=269 Identities=17% Similarity=0.176 Sum_probs=203.7
Q ss_pred eEEEEEcC--CCCEE-EEEc------CCcEEEEEcC-CCeeEEEEecccCcceeEEEEeeeCCe-EEEeeCCCCCCCCCc
Q 015650 88 LLHISFNQ--DHGCF-AAGT------DHGFRIYNCD-PFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLN 156 (403)
Q Consensus 88 i~~i~~s~--d~~~l-~~~~------~~~i~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~ 156 (403)
=.++.||| ++++. |++. .+.+.|.++. .........+. -...+..++|+++. ..++++..| |
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d--~~D~LfdV~Wse~~e~~~~~a~GD-----G 83 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD--TEDGLFDVAWSENHENQVIAASGD-----G 83 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee--cccceeEeeecCCCcceEEEEecC-----c
Confidence 35788998 34443 3322 2338888885 33333334554 66788899998752 334445555 9
Q ss_pred eEEEEECCC-CceeEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650 157 KVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (403)
Q Consensus 157 ~i~iwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (403)
+++|||+.. ..++..++ |...|.++.|++..+..+ .|++|++|+...++.++++.+|...|....|+|...+++
T Consensus 84 SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlf 163 (311)
T KOG0277|consen 84 SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLF 163 (311)
T ss_pred eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeE
Confidence 999999643 35777887 999999999998644333 599999999999999999999999999999999988876
Q ss_pred EEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCc-EEEEEecCCCcccEE
Q 015650 231 LVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRAEIY 307 (403)
Q Consensus 231 ~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~v~ 307 (403)
..+ +.|+.+++||++. ++...+..|...|.|+.|+. +.+.|++|+.|+. |++||+++.+ ++.++.+ |.-.|+
T Consensus 164 as~--Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~eL~g--h~~AVR 238 (311)
T KOG0277|consen 164 ASA--SGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLFELNG--HGLAVR 238 (311)
T ss_pred EEc--cCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EEEEehhhccccceeecC--CceEEE
Confidence 655 4699999999987 66666999999999999997 6678899999999 9999998754 5666654 778999
Q ss_pred EEEeCCCC-CEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEE
Q 015650 308 SLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV 386 (403)
Q Consensus 308 ~l~~s~d~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (403)
.+.|||.. ..|++++.|-+++|||...+.... .+...|.+-+..+
T Consensus 239 kvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~----------------------------------e~~~~HtEFv~g~ 284 (311)
T KOG0277|consen 239 KVKFSPHHASLLASASYDMTVRIWDPERQDSAI----------------------------------ETVDHHTEFVCGL 284 (311)
T ss_pred EEecCcchhhHhhhccccceEEecccccchhhh----------------------------------hhhhccceEEecc
Confidence 99999965 478999999999999999766311 1123444555667
Q ss_pred Eecc-CCCEEEEEccCC
Q 015650 387 AFGH-QKNTVVILGMDG 402 (403)
Q Consensus 387 ~fs~-d~~~l~~~~~dG 402 (403)
.||+ ++.++|..+.|+
T Consensus 285 Dws~~~~~~vAs~gWDe 301 (311)
T KOG0277|consen 285 DWSLFDPGQVASTGWDE 301 (311)
T ss_pred ccccccCceeeeccccc
Confidence 7766 567777777775
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.2e-28 Score=212.66 Aligned_cols=243 Identities=14% Similarity=0.180 Sum_probs=211.6
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (403)
Q Consensus 82 ~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i 160 (403)
..+.+.|+++.|+++|.+||+|..++ |.|||....+.. ..+..+|...|-+++|. ...+.+|+.+ +.|..
T Consensus 214 ~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~--~~~~~~h~~rvg~laW~--~~~lssGsr~-----~~I~~ 284 (484)
T KOG0305|consen 214 SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT--RTLRGSHASRVGSLAWN--SSVLSSGSRD-----GKILN 284 (484)
T ss_pred ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc--ccccCCcCceeEEEecc--CceEEEecCC-----CcEEE
Confidence 33488999999999999999999666 999999877666 56653489999999998 5567788888 99999
Q ss_pred EECCCCceeEE-Ee-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC
Q 015650 161 WDDHQSRCIGE-LS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (403)
Q Consensus 161 wd~~~~~~~~~-~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 235 (403)
+|++..+.... +. |...|..+.|++|+.+++ .|+.+.|||....+.+..+..|...+..++|+|...+++....|
T Consensus 285 ~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG 364 (484)
T KOG0305|consen 285 HDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG 364 (484)
T ss_pred EEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC
Confidence 99998876555 55 999999999999999999 48999999998888899999999999999999999887766678
Q ss_pred CccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEE--eCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC
Q 015650 236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS--STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313 (403)
Q Consensus 236 ~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~--~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~ 313 (403)
..|+.|++||..++.......-...|.+|.|++..+-|+++ ..++. |.||+..+.+.+..+.+ |...|..++++|
T Consensus 365 s~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~-i~lw~~ps~~~~~~l~g--H~~RVl~la~SP 441 (484)
T KOG0305|consen 365 SADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQ-ITLWKYPSMKLVAELLG--HTSRVLYLALSP 441 (484)
T ss_pred CcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCc-EEEEeccccceeeeecC--CcceeEEEEECC
Confidence 89999999999988776666678889999999998777654 34556 99999999999988886 778999999999
Q ss_pred CCCEEEEEeCCCcEEEEEeecCC
Q 015650 314 NAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 314 d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
||..+++|+.|.++++|++-...
T Consensus 442 dg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 442 DGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred CCCEEEEecccCcEEeccccCCC
Confidence 99999999999999999997754
No 62
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-28 Score=204.70 Aligned_cols=243 Identities=18% Similarity=0.285 Sum_probs=195.1
Q ss_pred ccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (403)
Q Consensus 78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (403)
..++.+|..+|..+.||||.++|++++ +..+++||+.++... ..+..++...+.+++|.||+..+++|+.| +
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~--~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d-----r 334 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR--HLYPSGLGFSVSSCAWCPDGFRFVTGSPD-----R 334 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh--hhcccCcCCCcceeEEccCCceeEecCCC-----C
Confidence 578899999999999999999988776 666999999988766 45554567889999999999999999999 9
Q ss_pred eEEEEECCCCceeEEEe--cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650 157 KVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (403)
Q Consensus 157 ~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (403)
.+..||+. |..+...+ ....|.+++..+||+++. .|..|++|+.++......+ ....++..++++.+++..++
T Consensus 335 ~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~Lv 412 (519)
T KOG0293|consen 335 TIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALV 412 (519)
T ss_pred cEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEE
Confidence 99999965 44444444 346799999999999887 5999999998875554433 34567888999988774433
Q ss_pred EeeCCccCeEEEEEccCCc-eeEEeecCCc--eEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEE
Q 015650 232 VCPGLQKGQVRVEHYASKR-TKFIMAHDSR--IACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY 307 (403)
Q Consensus 232 ~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~--i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~ 307 (403)
- -.+..+++||+.... ++...+|... +-.-+|-- +..++++|++|+. |+||+..+++++.++.+ |...|+
T Consensus 413 n---L~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~sgkll~~LsG--Hs~~vN 486 (519)
T KOG0293|consen 413 N---LQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRISGKLLAVLSG--HSKTVN 486 (519)
T ss_pred E---cccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccCCceeEeecC--Ccceee
Confidence 3 478999999998633 4556677654 22224543 5579999999999 99999999999999997 778999
Q ss_pred EEEeCCCC-CEEEEEeCCCcEEEEEeecC
Q 015650 308 SLAFSSNA-QWLAVSSDKGTVHVFNLKVN 335 (403)
Q Consensus 308 ~l~~s~d~-~~l~s~~~dg~v~iwd~~~~ 335 (403)
+++|+|.. .++|++++||+|+||.....
T Consensus 487 cVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 487 CVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 99999965 47899999999999987754
No 63
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=4e-27 Score=195.25 Aligned_cols=279 Identities=13% Similarity=0.178 Sum_probs=217.6
Q ss_pred CCCCCCCccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC---eEEEee
Q 015650 71 MPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN---ILALVG 146 (403)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s 146 (403)
.....++......|.+-|.++... ++.+++|+ |+.++||+..... . ..+. +|...+.++.+-.. ...+++
T Consensus 91 ~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~-~--~~~~-Ght~~ik~v~~v~~n~~~~~fvs 164 (423)
T KOG0313|consen 91 EAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS-I--KTIV-GHTGPIKSVAWVIKNSSSCLFVS 164 (423)
T ss_pred EecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCce-E--EEEe-cCCcceeeeEEEecCCccceEEE
Confidence 334444455566799999999887 77899988 5559999976433 2 4454 78888887776432 335889
Q ss_pred CCCCCCCCCceEEEEECCCCceeEE----Ee-cCCceeEEEEecCceEEE---ecCeEEEEEcCC---------------
Q 015650 147 GGPDPQYPLNKVMIWDDHQSRCIGE----LS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD--------------- 203 (403)
Q Consensus 147 ~~~d~~~~~~~i~iwd~~~~~~~~~----~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~--------------- 203 (403)
++.| .++++|.++.++.... .. |...|.++...+++..++ .|.+|+||+..+
T Consensus 165 as~D-----qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk 239 (423)
T KOG0313|consen 165 ASMD-----QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRK 239 (423)
T ss_pred ecCC-----ceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhh
Confidence 9998 9999999988754432 22 899999999999998888 599999999321
Q ss_pred ----------ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEE
Q 015650 204 ----------LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLL 273 (403)
Q Consensus 204 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l 273 (403)
..++..+.+|..++..+.|++. . .+++++.|.+|+.||+.++....-......+.|+..+|..++|
T Consensus 240 ~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~-~---v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll 315 (423)
T KOG0313|consen 240 KQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA-T---VIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLL 315 (423)
T ss_pred hhhhhhcccccCceEEecccccceeeEEEcCC-C---ceEeecccceEEEEEeecccceeeeecCcceeEeeccccccee
Confidence 1245667889999999999883 3 2334569999999999997766655567789999999999999
Q ss_pred EEEeCCCcEEEEEEcCCCc---EEEEEecCCCcccEEEEEeCCCCC-EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCC
Q 015650 274 ATSSTKGTLVRIFNTLDGT---LLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP 349 (403)
Q Consensus 274 ~s~~~dg~~i~iwd~~~~~---~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 349 (403)
++|+.|.. |++||-+++. ....+.+ |.+.|.++.|+|... +|++++.|+++++||+++.+.
T Consensus 316 ~~gssdr~-irl~DPR~~~gs~v~~s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~------------ 380 (423)
T KOG0313|consen 316 ASGSSDRH-IRLWDPRTGDGSVVSQSLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA------------ 380 (423)
T ss_pred eecCCCCc-eeecCCCCCCCceeEEeeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC------------
Confidence 99999999 9999988652 3345554 788999999999665 578999999999999999872
Q ss_pred CCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650 350 TLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG 402 (403)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG 402 (403)
.+..+..|.+.|.++.|. ++..|++|+.|.
T Consensus 381 ----------------------plydI~~h~DKvl~vdW~-~~~~IvSGGaD~ 410 (423)
T KOG0313|consen 381 ----------------------PLYDIAGHNDKVLSVDWN-EGGLIVSGGADN 410 (423)
T ss_pred ----------------------cceeeccCCceEEEEecc-CCceEEeccCcc
Confidence 134467778899889984 567899999985
No 64
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=1.2e-28 Score=210.24 Aligned_cols=238 Identities=11% Similarity=0.176 Sum_probs=197.9
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCe-EEEeeCCCCCCCCCc
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLN 156 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~ 156 (403)
+++.+|..+|..++|+.+|..+.+++ |..|++||+++++.. ..+. ....+.++.|.|+. ..++.|+.| +
T Consensus 252 rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~--~~f~--~~~~~~cvkf~pd~~n~fl~G~sd-----~ 322 (503)
T KOG0282|consen 252 RTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVL--SRFH--LDKVPTCVKFHPDNQNIFLVGGSD-----K 322 (503)
T ss_pred hhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEE--EEEe--cCCCceeeecCCCCCcEEEEecCC-----C
Confidence 78999999999999999999888887 777999999999887 4554 44667788888876 666677777 9
Q ss_pred eEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEe-eccCCCceeEEEeeCCCeEEE
Q 015650 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVL 231 (403)
Q Consensus 157 ~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 231 (403)
.|+.||+++++.++++. |-+.|..+.|-++|..++ -|++++||+.+..-.++.+ ........++..+|.++ ++
T Consensus 323 ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~--~~ 400 (503)
T KOG0282|consen 323 KIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK--WF 400 (503)
T ss_pred cEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCC--ee
Confidence 99999999999999998 899999999999998887 3889999999887665543 33344556788888877 45
Q ss_pred EeeCCccCeEEEEEccC----CceeEEeecC--CceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCccc
Q 015650 232 VCPGLQKGQVRVEHYAS----KRTKFIMAHD--SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE 305 (403)
Q Consensus 232 ~~~g~~d~~i~v~d~~~----~~~~~~~~~~--~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~ 305 (403)
++ -+.|+.|.+|.+.. .+.+.+.+|. +.-..+.|||||++|++|..||. +.+||.++.+++..++. |...
T Consensus 401 ~a-Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~-v~~wdwkt~kl~~~lka--h~~~ 476 (503)
T KOG0282|consen 401 AA-QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK-VNFWDWKTTKLVSKLKA--HDQP 476 (503)
T ss_pred hh-hccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc-EEEeechhhhhhhcccc--CCcc
Confidence 54 44789999998654 3345567774 45667899999999999999999 99999999999999986 6789
Q ss_pred EEEEEeCCCCC-EEEEEeCCCcEEEEE
Q 015650 306 IYSLAFSSNAQ-WLAVSSDKGTVHVFN 331 (403)
Q Consensus 306 v~~l~~s~d~~-~l~s~~~dg~v~iwd 331 (403)
+..+.|+|... .+|+++.||.|++|+
T Consensus 477 ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 477 CIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEEecCCCcceeEecccCceeEecC
Confidence 99999999654 789999999999996
No 65
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=9.7e-27 Score=197.53 Aligned_cols=281 Identities=15% Similarity=0.178 Sum_probs=225.1
Q ss_pred ccccCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeE---EEE-----------ecc-cCcceeEEEEeeeCCe
Q 015650 78 ESTSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREI---FRR-----------DFE-RGGGIGVVEMLFRCNI 141 (403)
Q Consensus 78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~---~~~-----------~~~-~~~~~~v~~~~~~~~~ 141 (403)
......|.-.|.+++++||++++.+++.+ .|.=|++.++... ... ... ..|...+.+++.++++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 35567899999999999999999999844 4988998766532 111 011 1677889999999999
Q ss_pred EEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCce--EEE-ecCeEEEEEcCCceeeeEeeccCCCc
Q 015650 142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI--IVV-LEQKIFVYNFADLKLLHQIETIANPK 217 (403)
Q Consensus 142 ~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~--~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~ 217 (403)
.++++++.| ..|.||+..+.+.++.+. |.+.|.+++|-.... +.+ .|.+|++|++.....+.++.+|...|
T Consensus 215 kylatgg~d-----~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v 289 (479)
T KOG0299|consen 215 KYLATGGRD-----RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGV 289 (479)
T ss_pred cEEEecCCC-----ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence 999999999 999999999999999998 999999999986543 333 69999999999988888998998877
Q ss_pred eeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 015650 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV 297 (403)
Q Consensus 218 ~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~ 297 (403)
..+....-.. +++.|..|+++++|++.......+.+|.+.+.|++|-.+ ..+++|+.+|. |.+|++...+++.+.
T Consensus 290 ~~IdaL~reR---~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 290 LGIDALSRER---CVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKKKPLFTS 364 (479)
T ss_pred eeechhcccc---eEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeecccCceeEe
Confidence 7665554443 445577999999999987777888899999999999855 46889999999 999999999888776
Q ss_pred ecCC----------CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccccccccee
Q 015650 298 RRGA----------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYF 367 (403)
Q Consensus 298 ~~~~----------~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (403)
.... ++..|++++..|...++++|+.+|.|++|.+..+-....
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~--------------------------- 417 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAIN--------------------------- 417 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccc---------------------------
Confidence 6421 112789999999999999999999999999998842100
Q ss_pred eeeeeeEEEEEeCCCceEEEeccCCCEEEEEcc
Q 015650 368 SSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM 400 (403)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~ 400 (403)
.+..+. -.+-|+.++|+++|++|++|..
T Consensus 418 ----~l~~ls-~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 418 ----LLYSLS-LVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred ----eeeecc-cccEEEEEEEccCCCEEEEecc
Confidence 011122 2457888999999998888753
No 66
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.6e-27 Score=206.86 Aligned_cols=263 Identities=16% Similarity=0.147 Sum_probs=219.0
Q ss_pred EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCcee
Q 015650 90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169 (403)
Q Consensus 90 ~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~ 169 (403)
-+.|+ ....||+|....|.+|+..++.......+ +...++++.|++++..|+.+..+ |.|.|||..+.+.+
T Consensus 182 lldWs-s~n~laValg~~vylW~~~s~~v~~l~~~---~~~~vtSv~ws~~G~~LavG~~~-----g~v~iwD~~~~k~~ 252 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALGQSVYLWSASSGSVTELCSF---GEELVTSVKWSPDGSHLAVGTSD-----GTVQIWDVKEQKKT 252 (484)
T ss_pred Hhhcc-cCCeEEEEecceEEEEecCCCceEEeEec---CCCceEEEEECCCCCEEEEeecC-----CeEEEEehhhcccc
Confidence 35666 45688999888899999887775433333 37899999999999999999998 99999999999888
Q ss_pred EEEe--cCCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeE-eeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEE
Q 015650 170 GELS--FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH 245 (403)
Q Consensus 170 ~~~~--~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d 245 (403)
..+. |...|.+++|+....... -++.|..+|++..+.... +.+|...+..+.|++++. ++++ |+.|+.+.|||
T Consensus 253 ~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~--~lAS-GgnDN~~~Iwd 329 (484)
T KOG0305|consen 253 RTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN--QLAS-GGNDNVVFIWD 329 (484)
T ss_pred ccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC--eecc-CCCccceEecc
Confidence 8887 789999999994333333 589999999998765544 778899899999999887 5665 56999999999
Q ss_pred ccC-CceeEEeecCCceEEEEEcC-CCCEEEEEe--CCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 015650 246 YAS-KRTKFIMAHDSRIACFALTQ-DGQLLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS 321 (403)
Q Consensus 246 ~~~-~~~~~~~~~~~~i~~~~~sp-~g~~l~s~~--~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~ 321 (403)
... .....+..|...|.+++|+| ...+||+|+ .|+. |++||..+++.+..+. ..+.|.+|.|++..+-|+++
T Consensus 330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~vd---tgsQVcsL~Wsk~~kEi~st 405 (484)
T KOG0305|consen 330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNTGARIDSVD---TGSQVCSLIWSKKYKELLST 405 (484)
T ss_pred CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCCCcEecccc---cCCceeeEEEcCCCCEEEEe
Confidence 965 55677889999999999999 566888864 5888 9999999999999988 44789999999999777665
Q ss_pred e--CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEc
Q 015650 322 S--DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG 399 (403)
Q Consensus 322 ~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~ 399 (403)
. .++.|.||++.+.+. +..+.+|...|..+++||||.+|++|+
T Consensus 406 hG~s~n~i~lw~~ps~~~-----------------------------------~~~l~gH~~RVl~la~SPdg~~i~t~a 450 (484)
T KOG0305|consen 406 HGYSENQITLWKYPSMKL-----------------------------------VAELLGHTSRVLYLALSPDGETIVTGA 450 (484)
T ss_pred cCCCCCcEEEEeccccce-----------------------------------eeeecCCcceeEEEEECCCCCEEEEec
Confidence 3 677899999999774 444778888999999999999999999
Q ss_pred cCCC
Q 015650 400 MDGR 403 (403)
Q Consensus 400 ~dG~ 403 (403)
.|.|
T Consensus 451 ~DET 454 (484)
T KOG0305|consen 451 ADET 454 (484)
T ss_pred ccCc
Confidence 9975
No 67
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.9e-26 Score=185.86 Aligned_cols=274 Identities=14% Similarity=0.156 Sum_probs=205.8
Q ss_pred CccccCCCCCCeEEEEEcCC-CCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650 77 AESTSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (403)
Q Consensus 77 ~~~~~~~~~~~i~~i~~s~d-~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~ 154 (403)
..++.....+.|.+|+|||. ..++++|+ |++||+|++........+... .|..++.+++|+.++..+++++.|
T Consensus 19 d~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~-~~~~PvL~v~WsddgskVf~g~~D---- 93 (347)
T KOG0647|consen 19 DYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQ-SHDGPVLDVCWSDDGSKVFSGGCD---- 93 (347)
T ss_pred ceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhh-ccCCCeEEEEEccCCceEEeeccC----
Confidence 34555667889999999994 45555666 999999999764333223333 688999999999999999999999
Q ss_pred CceEEEEECCCCceeEEEecCCceeEEEEecCce--EEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650 155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRI--IVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (403)
Q Consensus 155 ~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (403)
+.+++||+.+++....-.|..+|..+.|-+... +|+ .|.+|+.||++...++.++.. ...+++ ..-...-+
T Consensus 94 -k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa--~Dv~~pm~ 169 (347)
T KOG0647|consen 94 -KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYA--ADVLYPMA 169 (347)
T ss_pred -CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeee--hhccCcee
Confidence 999999999997666666999999999988665 555 599999999998888887754 233333 33333323
Q ss_pred EEEeeCCccCeEEEEEccCCceeE--E-eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC--cEEEEEecCCC--
Q 015650 230 VLVCPGLQKGQVRVEHYASKRTKF--I-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQEVRRGAD-- 302 (403)
Q Consensus 230 ~~~~~g~~d~~i~v~d~~~~~~~~--~-~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~--~~~~~~~~~~~-- 302 (403)
.++ ..++.|.+|++++..... + ..-+-.+.|++..+|....+.|+-+|. +.|..+..+ +.-.+|+.|..
T Consensus 170 vVa---ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~~~~~nFtFkCHR~~~ 245 (347)
T KOG0647|consen 170 VVA---TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDPNPKDNFTFKCHRSTN 245 (347)
T ss_pred EEE---ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCCCccCceeEEEeccCC
Confidence 333 367899999998744322 1 224556889999998888899999999 999988876 44445665431
Q ss_pred -----cccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEE
Q 015650 303 -----RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR 377 (403)
Q Consensus 303 -----~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (403)
--.|++|+|+|....|++++.||+..+||-+....+.+ .+
T Consensus 246 ~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~-----------------------------------s~ 290 (347)
T KOG0647|consen 246 SVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT-----------------------------------SE 290 (347)
T ss_pred CCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhc-----------------------------------cC
Confidence 12588999999999999999999999999887764322 23
Q ss_pred EeCCCceEEEeccCCCEEEEE
Q 015650 378 LVEGSPYIVAFGHQKNTVVIL 398 (403)
Q Consensus 378 ~~~~~~~~~~fs~d~~~l~~~ 398 (403)
.+..+|++++|+.+|+++|=+
T Consensus 291 ~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 291 THPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred cCCCccceeEecCCCCEEEEE
Confidence 345688899999999887643
No 68
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=8e-27 Score=217.52 Aligned_cols=276 Identities=18% Similarity=0.222 Sum_probs=219.7
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEc---CCcEEEEEcCCCe----------eEEEEecccCcceeEEEEeeeCCeEEEeeCC
Q 015650 82 SSPPPTLLHISFNQDHGCFAAGT---DHGFRIYNCDPFR----------EIFRRDFERGGGIGVVEMLFRCNILALVGGG 148 (403)
Q Consensus 82 ~~~~~~i~~i~~s~d~~~l~~~~---~~~i~iw~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~ 148 (403)
..+...|.+|..+|||..+|+|+ |++++||+.+.-- .....+.. .|...+.++.|++|+.+|++|+
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~-~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMD-DHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeec-cccCceeEEEECCCCCeEeecc
Confidence 33456799999999999999998 5668899875311 11112333 6889999999999999999999
Q ss_pred CCCCCCCceEEEEECCC------------------CceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCcee
Q 015650 149 PDPQYPLNKVMIWDDHQ------------------SRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKL 206 (403)
Q Consensus 149 ~d~~~~~~~i~iwd~~~------------------~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~ 206 (403)
+| +.|.||+... .+.+..+. |...|.+++|+|++.+++ .|++|.+||.++.+.
T Consensus 89 DD-----~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~ 163 (942)
T KOG0973|consen 89 DD-----RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL 163 (942)
T ss_pred Cc-----ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee
Confidence 99 9999998762 12455666 999999999999999999 599999999999999
Q ss_pred eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-CceeEEeec------CCceEEEEEcCCCCEEEEEeC-
Q 015650 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAH------DSRIACFALTQDGQLLATSST- 278 (403)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~------~~~i~~~~~sp~g~~l~s~~~- 278 (403)
+..+++|...+..+.|.|-|+ |+++.+ .|++|++|++.. +..+.+..+ ......+.|||||++|++...
T Consensus 164 ~~vl~~H~s~VKGvs~DP~Gk--y~ASqs-dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIGK--YFASQS-DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred eeeeecccccccceEECCccC--eeeeec-CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 999999999999999999988 566644 899999999665 333333332 345778999999999998543
Q ss_pred ---CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCC-----CC------------EEEEEeCCCcEEEEEeecCCCC
Q 015650 279 ---KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-----AQ------------WLAVSSDKGTVHVFNLKVNSGS 338 (403)
Q Consensus 279 ---dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d-----~~------------~l~s~~~dg~v~iwd~~~~~~~ 338 (403)
-.. +.|.+-.+.+.-..+.+ |.+++.+++|+|. .+ .+|+|+.|++|-||.....+++
T Consensus 241 n~~~~~-~~IieR~tWk~~~~LvG--H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 241 NGGKST-IAIIERGTWKVDKDLVG--HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred cCCcce-eEEEecCCceeeeeeec--CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 224 88998877777777876 7789999999971 11 6789999999999999887753
Q ss_pred CCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 339 ARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
... ..+...+|..++|+|||-.|++++.||+
T Consensus 318 ~vi----------------------------------~~lf~~SI~DmsWspdG~~LfacS~DGt 348 (942)
T KOG0973|consen 318 FVI----------------------------------HNLFNKSIVDMSWSPDGFSLFACSLDGT 348 (942)
T ss_pred hhh----------------------------------hhhhcCceeeeeEcCCCCeEEEEecCCe
Confidence 211 2344568999999999999999999996
No 69
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.7e-27 Score=183.53 Aligned_cols=203 Identities=16% Similarity=0.188 Sum_probs=178.5
Q ss_pred ecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEE
Q 015650 123 DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFV 198 (403)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i 198 (403)
.+. .+...|..+.|+.++.+.++++.| .+|++|+...|.+++++. |...|..++.+.|+..++ .|..+.+
T Consensus 12 ~l~-~~qgaV~avryN~dGnY~ltcGsd-----rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 12 ILD-CAQGAVRAVRYNVDGNYCLTCGSD-----RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred eec-ccccceEEEEEccCCCEEEEcCCC-----ceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence 344 678899999999999999999999 999999999999999999 999999999999988888 5889999
Q ss_pred EEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC---ceeEEeecCCceEEEEEcCCCCEEEE
Q 015650 199 YNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQDGQLLAT 275 (403)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~---~~~~~~~~~~~i~~~~~sp~g~~l~s 275 (403)
||.++|+.++.+.+|...+..+.|+.+.. +++ +|+.|..+++||-+.. +++.+......|.++.. .+..|++
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNeesS--Vv~-SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIva 160 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEESS--VVA-SGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVA 160 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcce--EEE-eccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEe
Confidence 99999999999999999999999987765 344 5779999999999884 45556667788999988 5668999
Q ss_pred EeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCC
Q 015650 276 SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARS 341 (403)
Q Consensus 276 ~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~ 341 (403)
|+.||+ ++.||++.|+.....-+ .+|+++.|++|++.++.++.|++|++.|-++++.+..+
T Consensus 161 GS~DGt-vRtydiR~G~l~sDy~g----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY 221 (307)
T KOG0316|consen 161 GSVDGT-VRTYDIRKGTLSSDYFG----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY 221 (307)
T ss_pred eccCCc-EEEEEeecceeehhhcC----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh
Confidence 999999 99999999988665543 58999999999999999999999999999999964443
No 70
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=5.6e-27 Score=201.02 Aligned_cols=273 Identities=12% Similarity=0.149 Sum_probs=220.0
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCe-eEEEEecc-cCcceeEEEEeeeCCeEEEeeCCCCCCCCCceE
Q 015650 81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFR-EIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (403)
Q Consensus 81 ~~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i 158 (403)
...|.+-|.++.++...+.+.+|+.++|+|||+.... ......+. ......+.++...+|+..|+.|+.. .++
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea-----stl 489 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA-----STL 489 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc-----cee
Confidence 4568888999999999999999999999999995322 11112221 1355678889999999999999887 899
Q ss_pred EEEECCCCceeEEEe---cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEE
Q 015650 159 MIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (403)
Q Consensus 159 ~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (403)
.|||+....+....+ ..-...+++.+||.++.+ +||.|.|||+.+...++.|++|.+...++.++.++..++
T Consensus 490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklW-- 567 (705)
T KOG0639|consen 490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLW-- 567 (705)
T ss_pred eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceee--
Confidence 999998765433333 234567889999998877 699999999999999999999999999999999998754
Q ss_pred eeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeC
Q 015650 233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312 (403)
Q Consensus 233 ~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s 312 (403)
+ |.-|.+|+.||++.++..........|.++..+|.+.+|+.|-.++. +.|......+. ..+. .|++.|.++.|.
T Consensus 568 T-GGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~-vevlh~skp~k-yqlh--lheScVLSlKFa 642 (705)
T KOG0639|consen 568 T-GGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSN-VEVLHTSKPEK-YQLH--LHESCVLSLKFA 642 (705)
T ss_pred c-CCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCc-EEEEecCCccc-eeec--ccccEEEEEEec
Confidence 3 55899999999998765544455678999999999999999999998 88887543333 3333 488999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeC-CCceEEEeccC
Q 015650 313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE-GSPYIVAFGHQ 391 (403)
Q Consensus 313 ~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fs~d 391 (403)
+-|+++++.+.|+.+..|...-+..+ ++..+ .+|.++..|-|
T Consensus 643 ~cGkwfvStGkDnlLnawrtPyGasi-------------------------------------FqskE~SsVlsCDIS~d 685 (705)
T KOG0639|consen 643 YCGKWFVSTGKDNLLNAWRTPYGASI-------------------------------------FQSKESSSVLSCDISFD 685 (705)
T ss_pred ccCceeeecCchhhhhhccCccccce-------------------------------------eeccccCcceeeeeccC
Confidence 99999999999999999999888741 22223 57899999999
Q ss_pred CCEEEEEccCC
Q 015650 392 KNTVVILGMDG 402 (403)
Q Consensus 392 ~~~l~~~~~dG 402 (403)
.++|++|+.|.
T Consensus 686 dkyIVTGSGdk 696 (705)
T KOG0639|consen 686 DKYIVTGSGDK 696 (705)
T ss_pred ceEEEecCCCc
Confidence 99999999884
No 71
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=4e-26 Score=225.55 Aligned_cols=236 Identities=13% Similarity=0.218 Sum_probs=192.8
Q ss_pred CCCCeEEEEEcCC-CCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEE
Q 015650 84 PPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMI 160 (403)
Q Consensus 84 ~~~~i~~i~~s~d-~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~i 160 (403)
+...|.+++|++. +.+|++++ |+.|+|||+.+.+.. ..+. +|...|.++.|++ ++..+++++.| +.|++
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~--~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~i 602 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLV--TEMK-EHEKRVWSIDYSSADPTLLASGSDD-----GSVKL 602 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEE--EEec-CCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEE
Confidence 3467899999874 78888888 555999999877654 5565 7889999999986 77889999999 99999
Q ss_pred EECCCCceeEEEecCCceeEEEEec-CceEEE---ecCeEEEEEcCCce-eeeEeeccCCCceeEEEeeCCCeEEEEeeC
Q 015650 161 WDDHQSRCIGELSFRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLK-LLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (403)
Q Consensus 161 wd~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 235 (403)
||+.++..+..+.+...+.++.|++ ++.+++ .|+.|++||+++.+ .+..+.+|...+..+.|. ++. ++++ +
T Consensus 603 Wd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~--~lvs-~ 678 (793)
T PLN00181 603 WSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS--TLVS-S 678 (793)
T ss_pred EECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC--EEEE-E
Confidence 9999999988888667899999964 677776 49999999998765 466777888889999886 444 3444 3
Q ss_pred CccCeEEEEEccC-------CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEec---------
Q 015650 236 LQKGQVRVEHYAS-------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR--------- 299 (403)
Q Consensus 236 ~~d~~i~v~d~~~-------~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~--------- 299 (403)
+.|+.|++||++. ..+..+.+|...+.+++|+|++.+|++|+.|+. |++|+......+..+..
T Consensus 679 s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~-v~iw~~~~~~~~~s~~~~~~~~~~~~ 757 (793)
T PLN00181 679 STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE-VFVYHKAFPMPVLSYKFKTIDPVSGL 757 (793)
T ss_pred ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE-EEEEECCCCCceEEEecccCCccccc
Confidence 4899999999874 345678899999999999999999999999999 99999876554432221
Q ss_pred --CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEe
Q 015650 300 --GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL 332 (403)
Q Consensus 300 --~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~ 332 (403)
..+...|.+++|+|++.+|++|+.||.|+||++
T Consensus 758 ~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 758 EVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 123457999999999999999999999999986
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2.1e-26 Score=194.13 Aligned_cols=271 Identities=13% Similarity=0.240 Sum_probs=223.3
Q ss_pred CCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650 85 PPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (403)
Q Consensus 85 ~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~ 163 (403)
...|.++...|....+.+|+.+ .+.++|...++.+ ..+. +|...|..+.++++...+++++.| ..|+||..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l--~~~~-Gh~kki~~v~~~~~~~~v~~aSad-----~~i~vws~ 290 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL--ATLK-GHTKKITSVKFHKDLDTVITASAD-----EIIRVWSV 290 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhh--hhcc-CcceEEEEEEeccchhheeecCCc-----ceEEeecc
Confidence 3578888888887888888855 7999998776655 6776 999999999999999999999998 99999998
Q ss_pred CCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeecc--CCCceeEEEeeCCCeEEEEeeCCc
Q 015650 164 HQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI--ANPKGLCAVSQGVGSLVLVCPGLQ 237 (403)
Q Consensus 164 ~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~ 237 (403)
.......... |..+|+.+..+|.|.|++ .|++..+.|++++..+...... .-.+.+.+|+||+- +++ +|..
T Consensus 291 ~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL--ifg-tgt~ 367 (506)
T KOG0289|consen 291 PLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL--IFG-TGTP 367 (506)
T ss_pred ccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce--EEe-ccCC
Confidence 8777666666 999999999999999998 4889999999999887766432 23466788888763 555 4889
Q ss_pred cCeEEEEEccCC-ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCC
Q 015650 238 KGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ 316 (403)
Q Consensus 238 d~~i~v~d~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~ 316 (403)
|+.+++||+..+ ....+.+|.++|..++|+.+|-+|+++++|+. |++||++..+..+++... ....|.++.|.+.|+
T Consensus 368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt 445 (506)
T KOG0289|consen 368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGT 445 (506)
T ss_pred CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccceeecc-ccccceeEEEcCCCC
Confidence 999999999985 45668899999999999999999999999999 999999998888888754 334799999999999
Q ss_pred EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeee-eEEEEEeCCCceEEEeccCCCEE
Q 015650 317 WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWS-VAQFRLVEGSPYIVAFGHQKNTV 395 (403)
Q Consensus 317 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~fs~d~~~l 395 (403)
+|+.++.| |+||-+...+ +.|. +.++..|.+..+++.|..+.+++
T Consensus 446 ~L~~~g~~--l~Vy~~~k~~--------------------------------k~W~~~~~~~~~sg~st~v~Fg~~aq~l 491 (506)
T KOG0289|consen 446 YLGIAGSD--LQVYICKKKT--------------------------------KSWTEIKELADHSGLSTGVRFGEHAQYL 491 (506)
T ss_pred eEEeecce--eEEEEEeccc--------------------------------ccceeeehhhhcccccceeeecccceEE
Confidence 99999666 5555555443 2332 34466677888999999999999
Q ss_pred EEEccCC
Q 015650 396 VILGMDG 402 (403)
Q Consensus 396 ~~~~~dG 402 (403)
++++.|.
T Consensus 492 ~s~smd~ 498 (506)
T KOG0289|consen 492 ASTSMDA 498 (506)
T ss_pred eeccchh
Confidence 9999875
No 73
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.4e-28 Score=200.43 Aligned_cols=275 Identities=11% Similarity=0.110 Sum_probs=220.2
Q ss_pred cccCCCCCCeEEEEEcCCC-CEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650 79 STSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~-~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (403)
..+.+|.+.|.|++=+|.. ..+++|+ |+.|+|||+....+. ..+. .|...|..+++.. ..+++.++| .
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~--~~f~-AH~G~V~Gi~v~~--~~~~tvgdD-----K 129 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI--RTFK-AHEGLVRGICVTQ--TSFFTVGDD-----K 129 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh--heee-cccCceeeEEecc--cceEEecCC-----c
Confidence 4468999999999999987 7788988 666999999876655 6676 7888999999877 566777777 9
Q ss_pred eEEEEECCCCceeEEEecCCceeEEEEecCceEEEe-cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC
Q 015650 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (403)
Q Consensus 157 ~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 235 (403)
+|+.|.+.- .++.++-....+..+.-+..+..+++ ...|.|||.....+++.+.-..+.+.++.++|....+ +++++
T Consensus 130 tvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsI-Las~~ 207 (433)
T KOG0268|consen 130 TVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSI-LASCA 207 (433)
T ss_pred ceeeeeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchh-eeeec
Confidence 999999654 57777777778888887777777775 4579999998888999998888888999999987654 45434
Q ss_pred CccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc-EEEEEecCCCcccEEEEEeCCC
Q 015650 236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAFSSN 314 (403)
Q Consensus 236 ~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~s~d 314 (403)
.|+.|.+||++.............-+.|+|+|.+-.+++|++|.. ++.||++..+ ++....+ |.+.|.++.|||.
T Consensus 208 -sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~n-lY~~DmR~l~~p~~v~~d--hvsAV~dVdfspt 283 (433)
T KOG0268|consen 208 -SDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHN-LYTYDMRNLSRPLNVHKD--HVSAVMDVDFSPT 283 (433)
T ss_pred -cCCceEEEecccCCccceeeeeccccceecCccccceeecccccc-ceehhhhhhcccchhhcc--cceeEEEeccCCC
Confidence 799999999999665443334445678999998888999999999 9999998754 4444554 7789999999999
Q ss_pred CCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCE
Q 015650 315 AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNT 394 (403)
Q Consensus 315 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~ 394 (403)
|+-+++|+.|.+|+||.++.+..-..+ .+ .+ -..|.+|.||.|.++
T Consensus 284 G~EfvsgsyDksIRIf~~~~~~SRdiY-------------------------ht-------kR--Mq~V~~Vk~S~Dsky 329 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVNHGHSRDIY-------------------------HT-------KR--MQHVFCVKYSMDSKY 329 (433)
T ss_pred cchhccccccceEEEeecCCCcchhhh-------------------------hH-------hh--hheeeEEEEeccccE
Confidence 999999999999999999988742111 00 01 136889999999999
Q ss_pred EEEEccCCC
Q 015650 395 VVILGMDGR 403 (403)
Q Consensus 395 l~~~~~dG~ 403 (403)
+++|+.||.
T Consensus 330 i~SGSdd~n 338 (433)
T KOG0268|consen 330 IISGSDDGN 338 (433)
T ss_pred EEecCCCcc
Confidence 999999984
No 74
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=5.8e-28 Score=189.59 Aligned_cols=245 Identities=14% Similarity=0.167 Sum_probs=207.7
Q ss_pred CccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650 77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (403)
Q Consensus 77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (403)
-.-++.+|.+.|++..++.+....|++. |-+-+|||.-++..+ ..++ |.--|.+++|+.|...+++++.+
T Consensus 51 wigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel--hsf~--hkhivk~~af~~ds~~lltgg~e----- 121 (334)
T KOG0278|consen 51 WIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL--HSFE--HKHIVKAVAFSQDSNYLLTGGQE----- 121 (334)
T ss_pred cEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh--hhhh--hhheeeeEEecccchhhhccchH-----
Confidence 3478999999999999999888888887 556999999888776 6776 88889999999999999999998
Q ss_pred ceEEEEECCCCc-eeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650 156 NKVMIWDDHQSR-CIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (403)
Q Consensus 156 ~~i~iwd~~~~~-~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (403)
..++|||++..+ +..++. |.+.|..+.|....+.+. .|++|++||.+++..++.+.. ..++..+.++++++.+.
T Consensus 122 kllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilT 200 (334)
T KOG0278|consen 122 KLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILT 200 (334)
T ss_pred HHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEE
Confidence 999999987764 455666 999999999987666555 489999999999999999864 67789999999998655
Q ss_pred EEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEE
Q 015650 231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (403)
Q Consensus 231 ~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 310 (403)
++ ..+.|.+||...-.+..-..-...|.+..++|+...+++|++|.. ++.||..+++.+..+.. .|.++|.++.
T Consensus 201 ia----~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~-~~kfDy~TgeEi~~~nk-gh~gpVhcVr 274 (334)
T KOG0278|consen 201 IA----YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFK-VYKFDYNTGEEIGSYNK-GHFGPVHCVR 274 (334)
T ss_pred Ee----cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceE-EEEEeccCCceeeeccc-CCCCceEEEE
Confidence 54 346899999887443333334566899999999999999999999 99999999999988632 2779999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650 311 FSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 311 ~s~d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
|+|||..-++|++||+|+||....++.
T Consensus 275 FSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 275 FSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ECCCCceeeccCCCceEEEEEecCCCc
Confidence 999999999999999999999988774
No 75
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.8e-26 Score=185.92 Aligned_cols=243 Identities=14% Similarity=0.242 Sum_probs=198.7
Q ss_pred CccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeE--EEeeCCCCCCC
Q 015650 77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL--ALVGGGPDPQY 153 (403)
Q Consensus 77 ~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~~ 153 (403)
+.-.+..|.+.|++++. ++.++|+|+ |.+|+|||+....+. ..+. .|...|+++.|.+... .|+++..|
T Consensus 35 ~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~ql--g~ll-~HagsitaL~F~~~~S~shLlS~sdD--- 106 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQL--GILL-SHAGSITALKFYPPLSKSHLLSGSDD--- 106 (362)
T ss_pred ccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhh--ccee-ccccceEEEEecCCcchhheeeecCC---
Confidence 34557889999999998 588999998 677999999876655 4444 6899999999988765 78899998
Q ss_pred CCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650 154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (403)
Q Consensus 154 ~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (403)
|.|.+|+....+++..++ |...|+.++++|.+++.. .|+.+++||+-+|+.-..+.. ......+.|++.|+++
T Consensus 107 --G~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F 183 (362)
T KOG0294|consen 107 --GHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHF 183 (362)
T ss_pred --CcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEE
Confidence 999999999999999999 999999999999999877 599999999998876555433 2333568999999976
Q ss_pred EEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEE
Q 015650 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL 309 (403)
Q Consensus 230 ~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l 309 (403)
++.. ...|-+|.+....+.........+.|+.|. ++.+|++|..|+. |.+||..+..++..+.. |...|-++
T Consensus 184 ~v~~----~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~-i~~~D~ds~~~~~~~~A--H~~RVK~i 255 (362)
T KOG0294|consen 184 VVSG----RNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEW-ISLKDTDSDTPLTEFLA--HENRVKDI 255 (362)
T ss_pred EEEe----ccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCce-EEEeccCCCccceeeec--chhheeee
Confidence 6653 467899998885554333334567787775 6678899999999 99999999999888886 78999998
Q ss_pred Ee--CCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650 310 AF--SSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (403)
Q Consensus 310 ~~--s~d~~~l~s~~~dg~v~iwd~~~~~~~ 338 (403)
.+ .|++.+|++++.||.|+|||++.....
T Consensus 256 ~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 256 ASYTNPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred EEEecCCceEEEEeccCceEEEEEccccccC
Confidence 84 467889999999999999999987543
No 76
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=8e-26 Score=182.89 Aligned_cols=267 Identities=15% Similarity=0.187 Sum_probs=201.6
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650 82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (403)
Q Consensus 82 ~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i 160 (403)
....+.|+.|.|+|.+..|++++ |+.+++|++...... ..+. |..++.+++|.++.. +++++-| |.|+.
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~--~~~~--~~~plL~c~F~d~~~-~~~G~~d-----g~vr~ 79 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK--LKFK--HGAPLLDCAFADEST-IVTGGLD-----GQVRR 79 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh--hhee--cCCceeeeeccCCce-EEEeccC-----ceEEE
Confidence 34567899999998877666555 999999999877443 4554 889999999988554 5566666 99999
Q ss_pred EECCCCceeEEEecCCceeEEEEecC-ceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650 161 WDDHQSRCIGELSFRSEVRSVKLRRD-RIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (403)
Q Consensus 161 wd~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 237 (403)
+|+.+++....-.|..+|.+|.+.+. +.++. +|++|++||.+.......+.... ...+++-.++.+++++ .
T Consensus 80 ~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k---kVy~~~v~g~~LvVg~---~ 153 (323)
T KOG1036|consen 80 YDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK---KVYCMDVSGNRLVVGT---S 153 (323)
T ss_pred EEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc---eEEEEeccCCEEEEee---c
Confidence 99999988777779999999999975 44444 69999999998755544443322 4556666677666544 7
Q ss_pred cCeEEEEEccCCceeE---EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC----cEEEEEecCCC-------c
Q 015650 238 KGQVRVEHYASKRTKF---IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----TLLQEVRRGAD-------R 303 (403)
Q Consensus 238 d~~i~v~d~~~~~~~~---~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~----~~~~~~~~~~~-------~ 303 (403)
+..+.+||+++..... -..-+-.+.|+++-|++.=++.++-||. |.+=.+... +....|+.|.. -
T Consensus 154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s~~~~skkyaFkCHr~~~~~~~~~ 232 (323)
T KOG1036|consen 154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDSEEAQSKKYAFKCHRLSEKDTEII 232 (323)
T ss_pred CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce-EEEEccCCchHHhhhceeEEeeecccCCceEE
Confidence 8999999999843322 2234567899999998888899999998 777555443 33344554311 1
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCc
Q 015650 304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSP 383 (403)
Q Consensus 304 ~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (403)
-+|++|+|+|-.+.|+||+.||.|.+||+.+.+.+ .++..-+..|
T Consensus 233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl-----------------------------------~q~~~~~~SI 277 (323)
T KOG1036|consen 233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL-----------------------------------KQLAKYETSI 277 (323)
T ss_pred EEeceeEeccccceEEecCCCceEEEccCcchhhh-----------------------------------hhccCCCCce
Confidence 37999999999999999999999999999998852 2233335678
Q ss_pred eEEEeccCCCEEEEEcc
Q 015650 384 YIVAFGHQKNTVVILGM 400 (403)
Q Consensus 384 ~~~~fs~d~~~l~~~~~ 400 (403)
..++|+.||..||+|+.
T Consensus 278 ~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 278 SSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEEEeccCCCeEEEEec
Confidence 89999999999999874
No 77
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.6e-27 Score=185.56 Aligned_cols=237 Identities=15% Similarity=0.179 Sum_probs=188.8
Q ss_pred CCCCeEEEEEcCCC--CEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEE
Q 015650 84 PPPTLLHISFNQDH--GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMI 160 (403)
Q Consensus 84 ~~~~i~~i~~s~d~--~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~i 160 (403)
-.+.+..++|+++. ..+++.+|+.++|||+..... ....++ .|...|.++.|++ +...+++++-| ++|++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~-Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD-----~TiKL 131 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK-PIHKFK-EHKREVYSVDWNTVRRRIFLTSSWD-----GTIKL 131 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCc-chhHHH-hhhhheEEeccccccceeEEeeccC-----CceEe
Confidence 45788999998864 344445577799999643333 335666 7999999999987 45556677888 99999
Q ss_pred EECCCCceeEEEe-cCCceeEEEEecC-ceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC
Q 015650 161 WDDHQSRCIGELS-FRSEVRSVKLRRD-RIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (403)
Q Consensus 161 wd~~~~~~~~~~~-~~~~i~~~~~~~~-~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 235 (403)
|+....+.++++. |...|....|+|. ..+++ .|+++++||++.......+..|...+.++.|+..... ++++ |
T Consensus 132 W~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~-vl~T-g 209 (311)
T KOG0277|consen 132 WDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHN-VLAT-G 209 (311)
T ss_pred ecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCc-EEEe-c
Confidence 9999999999999 9999999999995 44444 5999999999874434448888888888888877665 3444 5
Q ss_pred CccCeEEEEEccC--CceeEEeecCCceEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCc-EEEEEecCCCcccEEEEEe
Q 015650 236 LQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAF 311 (403)
Q Consensus 236 ~~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~-g~~l~s~~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~ 311 (403)
+.|+.|+.||++. ..+..+.+|.-.|..++|||. ..+|++++.|-+ ++|||..... ++.+.. + |..-|..+.|
T Consensus 210 ~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~ds~~e~~~-~-HtEFv~g~Dw 286 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQDSAIETVD-H-HTEFVCGLDW 286 (311)
T ss_pred CCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccchhhhhhhh-c-cceEEecccc
Confidence 6999999999998 445677899999999999995 468899999999 9999988554 344444 2 7788999999
Q ss_pred CC-CCCEEEEEeCCCcEEEEEe
Q 015650 312 SS-NAQWLAVSSDKGTVHVFNL 332 (403)
Q Consensus 312 s~-d~~~l~s~~~dg~v~iwd~ 332 (403)
++ ++.++|+++.|+.++||+-
T Consensus 287 s~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 287 SLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccCceeeecccccceeeecc
Confidence 97 5679999999999999984
No 78
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.8e-25 Score=203.91 Aligned_cols=243 Identities=12% Similarity=0.102 Sum_probs=181.2
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEE-----------EecccCcceeEEEEeeeC-CeEEEeeCCCCC
Q 015650 85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFR-----------RDFERGGGIGVVEMLFRC-NILALVGGGPDP 151 (403)
Q Consensus 85 ~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~ 151 (403)
-..|.....++|+..++++..+. ...|+...+..++. ..+. +|...|.++.|+| ++..+++++.|
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~-GH~~~V~~v~fsP~d~~~LaSgS~D- 97 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILL-GQEGPIIDVAFNPFDPQKLFTASED- 97 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEe-CCCCCEEEEEEcCCCCCEEEEEeCC-
Confidence 34455566666765555555444 55666443322110 1233 7889999999999 77889999999
Q ss_pred CCCCceEEEEECCCC-------ceeEEEe-cCCceeEEEEecCc-eEEE---ecCeEEEEEcCCceeeeEeeccCCCcee
Q 015650 152 QYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDR-IIVV---LEQKIFVYNFADLKLLHQIETIANPKGL 219 (403)
Q Consensus 152 ~~~~~~i~iwd~~~~-------~~~~~~~-~~~~i~~~~~~~~~-~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 219 (403)
++|++||+.++ +++..+. |...|.+++|+|++ .+++ .|++|++||+++++.+..+..|...+..
T Consensus 98 ----gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~s 173 (493)
T PTZ00421 98 ----GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITS 173 (493)
T ss_pred ----CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEE
Confidence 99999999765 2455666 89999999999975 4555 4999999999999999999889999999
Q ss_pred EEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCc-eEEEEEcCCCCEEEEEe----CCCcEEEEEEcCCCc-
Q 015650 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSR-IACFALTQDGQLLATSS----TKGTLVRIFNTLDGT- 292 (403)
Q Consensus 220 ~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~-i~~~~~sp~g~~l~s~~----~dg~~i~iwd~~~~~- 292 (403)
++|++++.. +++ ++.|+.|++||++++. +..+.+|.+. +..+.|.+++..|++++ .|+. |++||+++..
T Consensus 174 la~spdG~l--Lat-gs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~-VklWDlr~~~~ 249 (493)
T PTZ00421 174 LEWNLDGSL--LCT-TSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ-IMLWDTRKMAS 249 (493)
T ss_pred EEEECCCCE--EEE-ecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe-EEEEeCCCCCC
Confidence 999998873 444 4589999999999855 4556778764 45678999888887654 4788 9999998765
Q ss_pred EEEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCcEEEEEeecCCCC
Q 015650 293 LLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGS 338 (403)
Q Consensus 293 ~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~~~~ 338 (403)
++.....+ ....+....|++++.+|++++ .|+.|++||+.+++..
T Consensus 250 p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 250 PYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred ceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 33333322 334667778999999999887 5999999999987743
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.1e-26 Score=211.60 Aligned_cols=239 Identities=19% Similarity=0.301 Sum_probs=200.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEE
Q 015650 84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (403)
Q Consensus 84 ~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd 162 (403)
+...+.+..|. ..++.+++ +..|++|+..++.... ..+. +|...|.++.+...+..+++++.| .++++||
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~-~~l~-GH~g~V~~l~~~~~~~~lvsgS~D-----~t~rvWd 277 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLIL-TRLV-GHFGGVWGLAFPSGGDKLVSGSTD-----KTERVWD 277 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEE-eecc-CCCCCceeEEEecCCCEEEEEecC-----CcEEeEe
Confidence 56788888888 44666666 5669999988776552 3376 899999999998777789999988 9999999
Q ss_pred CCCCceeEEEe-cCCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCe
Q 015650 163 DHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240 (403)
Q Consensus 163 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 240 (403)
..+|++...+. |.+.|.++...+....-. .|.+|++|++.++..+..+.+|..+|.++.+. ++ +++ +|+.|+.
T Consensus 278 ~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~--~lv-sgs~d~~ 352 (537)
T KOG0274|consen 278 CSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EP--LLV-SGSYDGT 352 (537)
T ss_pred cCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CC--EEE-EEecCce
Confidence 99999999999 999999988866554443 69999999999999999999899999988887 33 333 3678999
Q ss_pred EEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC-cEEEEEecCCCcccEEEEEeCCCCCEE
Q 015650 241 VRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWL 318 (403)
Q Consensus 241 i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~s~d~~~l 318 (403)
|++||..+ +.+..+.+|...|.++.+.+. .++++|+.|++ |++||+++. +++.++.. |.+.+..+.+ .+++|
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl~~--h~~~v~~l~~--~~~~L 426 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLRTKRKCIHTLQG--HTSLVSSLLL--RDNFL 426 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCCchhhhhhhhcC--Cccccccccc--cccee
Confidence 99999998 456778999999999988655 89999999999 999999999 99999986 6677766665 67899
Q ss_pred EEEeCCCcEEEEEeecCCCCCCCC
Q 015650 319 AVSSDKGTVHVFNLKVNSGSARSE 342 (403)
Q Consensus 319 ~s~~~dg~v~iwd~~~~~~~~~~~ 342 (403)
++++.|++|++||..+++....+.
T Consensus 427 vs~~aD~~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 427 VSSSADGTIKLWDAEEGECLRTLE 450 (537)
T ss_pred EeccccccEEEeecccCceeeeec
Confidence 999999999999999999755443
No 80
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.1e-24 Score=167.30 Aligned_cols=277 Identities=16% Similarity=0.216 Sum_probs=213.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcC------CCe-------eEEEEecccCcceeEEEEeeeCCeEEEeeCC
Q 015650 83 SPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCD------PFR-------EIFRRDFERGGGIGVVEMLFRCNILALVGGG 148 (403)
Q Consensus 83 ~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~------~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~ 148 (403)
.....|.+++|+|.|.+.++|+.. +++|-... ... .++.+.- .+|...|.+.+|++.+..+++++
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~-khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRN-KHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeec-cccCccEEEEEecCccCeEEecC
Confidence 355689999999999999999854 47765431 110 1111222 37889999999999999999999
Q ss_pred CCCCCCCceEEEEECCCCce-----eEEEe-cCCceeEEEEecC----ceEEE----ecCeEEEEEcCCceeeeEeeccC
Q 015650 149 PDPQYPLNKVMIWDDHQSRC-----IGELS-FRSEVRSVKLRRD----RIIVV----LEQKIFVYNFADLKLLHQIETIA 214 (403)
Q Consensus 149 ~d~~~~~~~i~iwd~~~~~~-----~~~~~-~~~~i~~~~~~~~----~~~~~----~d~~i~i~d~~~~~~~~~~~~~~ 214 (403)
.| .+|++.-++...+ -.++. |.+.|..++|..+ +.+++ .|..|++-|..+|+..+.+.+|.
T Consensus 109 nd-----k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sght 183 (350)
T KOG0641|consen 109 ND-----KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHT 183 (350)
T ss_pred CC-----ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCc
Confidence 99 9999987654332 23455 9999999999764 55666 37789999999999999999888
Q ss_pred CCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCcee-EEe--ec-----CCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015650 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIM--AH-----DSRIACFALTQDGQLLATSSTKGTLVRIF 286 (403)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~-~~~--~~-----~~~i~~~~~sp~g~~l~s~~~dg~~i~iw 286 (403)
+.|..+ +++++- +..+|+.|.+|++||++-.... ++. -| ...|.+++..|.|++|++|-.|.. ..+|
T Consensus 184 ghilal-yswn~~---m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~ly 258 (350)
T KOG0641|consen 184 GHILAL-YSWNGA---MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLY 258 (350)
T ss_pred ccEEEE-EEecCc---EEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEE
Confidence 765433 344442 3345889999999999975433 322 12 256899999999999999999999 9999
Q ss_pred EcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccce
Q 015650 287 NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKY 366 (403)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (403)
|++.++.++.+.. |...|.++.|+|...||++++.|..|++-|+.-.-. . .+|
T Consensus 259 dirg~r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla-~----------------------el~-- 311 (350)
T KOG0641|consen 259 DIRGGRMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA-H----------------------ELP-- 311 (350)
T ss_pred EeeCCceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecccchh-h----------------------cCc--
Confidence 9999999999986 789999999999999999999999999999875431 1 111
Q ss_pred eeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 367 FSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
+..+..|++.+-.+.|+|..-.+++.++|.+
T Consensus 312 ------~~vv~ehkdk~i~~rwh~~d~sfisssadkt 342 (350)
T KOG0641|consen 312 ------IMVVAEHKDKAIQCRWHPQDFSFISSSADKT 342 (350)
T ss_pred ------eEEEEeccCceEEEEecCccceeeeccCcce
Confidence 2234556777778999999988888888864
No 81
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.9e-25 Score=204.99 Aligned_cols=227 Identities=14% Similarity=0.162 Sum_probs=177.5
Q ss_pred cccCCCCCCeEEEEEcC-CCCEEEEEcCC-cEEEEEcCCCee-----EEEEecccCcceeEEEEeeeCCe-EEEeeCCCC
Q 015650 79 STSSSPPPTLLHISFNQ-DHGCFAAGTDH-GFRIYNCDPFRE-----IFRRDFERGGGIGVVEMLFRCNI-LALVGGGPD 150 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~-d~~~l~~~~~~-~i~iw~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d 150 (403)
..+.+|.+.|++++|+| ++.+|++|+++ .|+||++..... .....+. +|...|..+.|+++. ..+++++.|
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~D 147 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGAD 147 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCC
Confidence 34789999999999999 88999999855 599999975431 1224555 788999999999975 688888888
Q ss_pred CCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCc-eeEEEeeC
Q 015650 151 PQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPK-GLCAVSQG 225 (403)
Q Consensus 151 ~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~ 225 (403)
+.|+|||+.+++.+..+. |...|.+++|+|++.+++ .|++|++||+++++.+..+..|.... ..+.|.++
T Consensus 148 -----gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~ 222 (493)
T PTZ00421 148 -----MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKR 222 (493)
T ss_pred -----CEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCC
Confidence 999999999999988888 889999999999999887 48999999999999888888876643 35667776
Q ss_pred CCeEEEEe--eCCccCeEEEEEccCCc--eeEEeec-CCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcEEEEEec
Q 015650 226 VGSLVLVC--PGLQKGQVRVEHYASKR--TKFIMAH-DSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRR 299 (403)
Q Consensus 226 ~~~~~~~~--~g~~d~~i~v~d~~~~~--~~~~~~~-~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~ 299 (403)
++.+ +++ .++.|+.|++||++... ......+ ...+....|++++++|++++. |+. |++||+.+++.+.....
T Consensus 223 ~~~i-vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~-Iriwdl~~~~~~~~~~~ 300 (493)
T PTZ00421 223 KDLI-ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN-IRCFELMNERLTFCSSY 300 (493)
T ss_pred CCeE-EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe-EEEEEeeCCceEEEeec
Confidence 5543 332 12458999999998632 3333323 345666789999999998874 999 99999999988776653
Q ss_pred CCCcccEEEEEeCCC
Q 015650 300 GADRAEIYSLAFSSN 314 (403)
Q Consensus 300 ~~~~~~v~~l~~s~d 314 (403)
. +..++..++|.|.
T Consensus 301 ~-s~~~~~g~~~~pk 314 (493)
T PTZ00421 301 S-SVEPHKGLCMMPK 314 (493)
T ss_pred c-CCCCCcceEeccc
Confidence 2 4457788888884
No 82
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.4e-26 Score=194.97 Aligned_cols=241 Identities=20% Similarity=0.277 Sum_probs=199.1
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCc
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLN 156 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~ 156 (403)
+.+......|.++.|-.||++||+|++.| |+|||+.+.. ..+.+. .|..++....|+++ ...++++++| +
T Consensus 62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~--iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd-----~ 133 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV--ILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDD-----K 133 (487)
T ss_pred hhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHH--HHHHHh-hccCceeEEEecccCCeEEEecCCC-----c
Confidence 55666778999999999999999999777 9999965422 236666 79999999999885 6678888888 9
Q ss_pred eEEEEECCCCceeEEEe-cCCceeEEEEecCce-EEE---ecCeEEEEEcCCc-eeeeEeeccCCCceeEEEeeCCCeEE
Q 015650 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLV 230 (403)
Q Consensus 157 ~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~---~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (403)
.+++||+.+......+. |...|.+.+|+|... +++ .||+|++||++.. ..+.++ .|..++..+.+-|.+..
T Consensus 134 v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~-- 210 (487)
T KOG0310|consen 134 VVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSL-- 210 (487)
T ss_pred eEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCE--
Confidence 99999999988655666 999999999999654 444 5999999999986 566666 47889999998888763
Q ss_pred EEeeCCccCeEEEEEccCCc-ee-EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650 231 LVCPGLQKGQVRVEHYASKR-TK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308 (403)
Q Consensus 231 ~~~~g~~d~~i~v~d~~~~~-~~-~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 308 (403)
++++| ...|++||+.++. .. .+..|...|+|+++..++..|++++-|+. |++||+.+.+.+..+. ..++|.+
T Consensus 211 iasAg--Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~Kvv~s~~---~~~pvLs 284 (487)
T KOG0310|consen 211 IASAG--GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNYKVVHSWK---YPGPVLS 284 (487)
T ss_pred EEEcC--CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc-eEEEEccceEEEEeee---cccceee
Confidence 44434 3789999998633 32 33459999999999999999999999999 9999999999999888 6789999
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 309 LAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 309 l~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
|+.+|+++.++.|..+|.+.+=+....+
T Consensus 285 iavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 285 IAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred EEecCCCceEEEecccceeeeehhhccc
Confidence 9999999999999999988777555544
No 83
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.2e-26 Score=194.28 Aligned_cols=238 Identities=18% Similarity=0.277 Sum_probs=200.1
Q ss_pred ccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (403)
Q Consensus 78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (403)
..++.+..+.|+++.|.++++.+++++ |+.+++|+++..+.. .+|. +|...|+++.|......+++++.| .
T Consensus 212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~--~TLs-GHtdkVt~ak~~~~~~~vVsgs~D-----R 283 (459)
T KOG0288|consen 212 ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLR--HTLS-GHTDKVTAAKFKLSHSRVVSGSAD-----R 283 (459)
T ss_pred hhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhh--hhhc-ccccceeeehhhccccceeecccc-----c
Confidence 356778888999999999998877666 666999999877655 7787 799999999998877779999999 9
Q ss_pred eEEEEECCCCceeEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (403)
Q Consensus 157 ~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (403)
+|++||+....+.+++-....+.+|..+ ...++ .|++|++||++...+...+..+. .+..+.+++++..++ .+
T Consensus 284 tiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lL-ss 359 (459)
T KOG0288|consen 284 TIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELL-SS 359 (459)
T ss_pred hhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEe-ee
Confidence 9999999999998888777778888877 23333 69999999999999998887655 889999999987653 33
Q ss_pred eCCccCeEEEEEccCCceeEEe-e----cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650 234 PGLQKGQVRVEHYASKRTKFIM-A----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308 (403)
Q Consensus 234 ~g~~d~~i~v~d~~~~~~~~~~-~----~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 308 (403)
+.|.++.+.|+++..+.... + -....+.+.|||++.|+++|+.||. |+||++.++++...+........|++
T Consensus 360 --sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW~v~tgKlE~~l~~s~s~~aI~s 436 (459)
T KOG0288|consen 360 --SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIWSVFTGKLEKVLSLSTSNAAITS 436 (459)
T ss_pred --cCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEEEccCceEEEEeccCCCCcceEE
Confidence 47899999999997765432 1 1234788999999999999999999 99999999999998887533347999
Q ss_pred EEeCCCCCEEEEEeCCCcEEEE
Q 015650 309 LAFSSNAQWLAVSSDKGTVHVF 330 (403)
Q Consensus 309 l~~s~d~~~l~s~~~dg~v~iw 330 (403)
++|+|.|.+|++++.++.+.+|
T Consensus 437 ~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 437 LSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEEcCCCchhhcccCCcceEec
Confidence 9999999999999999999999
No 84
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=2.5e-26 Score=185.91 Aligned_cols=281 Identities=15% Similarity=0.192 Sum_probs=218.7
Q ss_pred ccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCC---------------C-eeEEEEecccCcceeEEEEeeeCC
Q 015650 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDP---------------F-REIFRRDFERGGGIGVVEMLFRCN 140 (403)
Q Consensus 78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~---------------~-~~~~~~~~~~~~~~~v~~~~~~~~ 140 (403)
...+..|...+.+.+|++||.++|+|+ |..|+|+|++. . .....+++. .|...|..+.|+|.
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPr 183 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPR 183 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecch
Confidence 356788999999999999999999999 55599999851 0 112335665 68899999999999
Q ss_pred eEEEeeCCCCCCCCCceEEEEECCCCceeE---EEecCCceeEEEEecCceEEE--ec-CeEEEEEcCCceeeeEe---e
Q 015650 141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIG---ELSFRSEVRSVKLRRDRIIVV--LE-QKIFVYNFADLKLLHQI---E 211 (403)
Q Consensus 141 ~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~--~d-~~i~i~d~~~~~~~~~~---~ 211 (403)
...|+++++| ++|++||+..-...+ .++...+|.++.|+|.|.+++ .| .++++||+++-++...- .
T Consensus 184 e~ILiS~srD-----~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 184 ETILISGSRD-----NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred hheEEeccCC-----CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccc
Confidence 9999999999 999999987654333 344678999999999999888 34 58999999998776543 3
Q ss_pred ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC-ceeEE-eecC-CceEEEEEcCCCCEEEEEeCCCcEEEEEEc
Q 015650 212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFI-MAHD-SRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (403)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~-~~~~~-~~~~-~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~ 288 (403)
.|...|..+.+++.++ +.++ ++.||.|++||--.. ++.++ .+|. ..|.+..|..+|+|+++.+.|.. +++|.+
T Consensus 259 qht~ai~~V~Ys~t~~--lYvT-aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi 334 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGS--LYVT-ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEI 334 (430)
T ss_pred ccccceeEEEecCCcc--EEEE-eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-eeeeee
Confidence 5677788888888876 3333 579999999996664 44444 3565 46889999999999999999999 999999
Q ss_pred CCCcEEEEEecCCCcc---cEEEEEeCCCCCEEEEEe-CCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccccccc
Q 015650 289 LDGTLLQEVRRGADRA---EIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP 364 (403)
Q Consensus 289 ~~~~~~~~~~~~~~~~---~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (403)
.+++++.++.+....+ --+...|+....+++.-. ..+.+.-||.++.......
T Consensus 335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~----------------------- 391 (430)
T KOG0640|consen 335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL----------------------- 391 (430)
T ss_pred cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc-----------------------
Confidence 9999999988642222 234566888888877665 4678999999998742211
Q ss_pred ceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650 365 KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG 402 (403)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG 402 (403)
--+|.+.+..+.-||.+..+.+++.|-
T Consensus 392 -----------slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 392 -----------SLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred -----------ccCCCCCceEEEeCCCCCceeeecccc
Confidence 235567777788899999999988874
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=7.2e-26 Score=208.06 Aligned_cols=240 Identities=20% Similarity=0.318 Sum_probs=205.2
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (403)
Q Consensus 81 ~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~ 159 (403)
+.+|.+.|.+++|..-+.+|++|+ |.+++|||+.++++. ..+. +|...+..+... ...+++++.| .+|+
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~--~~l~-gh~stv~~~~~~--~~~~~sgs~D-----~tVk 314 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT--HSLQ-GHTSSVRCLTID--PFLLVSGSRD-----NTVK 314 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE--EEec-CCCceEEEEEcc--CceEeeccCC-----ceEE
Confidence 899999999999987788999998 777999999888877 6776 788888887664 4466778888 9999
Q ss_pred EEECCCCceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCC
Q 015650 160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (403)
Q Consensus 160 iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 236 (403)
+|++.++..+..+. |..+|.++.++ ...++. .|++|++||..++++++.+.+|...|..+.+... + .+. +|+
T Consensus 315 VW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~--~~~-Sgs 389 (537)
T KOG0274|consen 315 VWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-N--RLL-SGS 389 (537)
T ss_pred EEeccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-c--eEE-eee
Confidence 99999999999999 99999999998 333333 6999999999999999999999999998877664 2 233 467
Q ss_pred ccCeEEEEEccCC--ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCC
Q 015650 237 QKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314 (403)
Q Consensus 237 ~d~~i~v~d~~~~--~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d 314 (403)
.|+.|++||++++ .+..+.+|..-+..+.+ .+++|++++.|+. |++||..++++++++... |...|..+++.
T Consensus 390 ~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~-- 463 (537)
T KOG0274|consen 390 LDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEEGECLRTLEGR-HVGGVSALALG-- 463 (537)
T ss_pred eccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc-EEEeecccCceeeeeccC-CcccEEEeecC--
Confidence 8999999999997 66778889888877765 7889999999999 999999999999999974 55788888886
Q ss_pred CCEEEEEeCCCcEEEEEeecCCCCCCC
Q 015650 315 AQWLAVSSDKGTVHVFNLKVNSGSARS 341 (403)
Q Consensus 315 ~~~l~s~~~dg~v~iwd~~~~~~~~~~ 341 (403)
...+++++.||.+++||+++++.....
T Consensus 464 ~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 464 KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cceEEEEecCCeeEEEecccCchhhhh
Confidence 467888899999999999999976654
No 86
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.5e-26 Score=208.07 Aligned_cols=235 Identities=13% Similarity=0.186 Sum_probs=192.4
Q ss_pred cccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC--------------------------------C-----
Q 015650 124 FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ--------------------------------S----- 166 (403)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~--------------------------------~----- 166 (403)
+...|...|+++.|+++|.+||+++.| +.|+||.+.. .
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD-----~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGED-----GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCC-----ceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 334799999999999999999999999 9999998754 0
Q ss_pred -----------------------ceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeE
Q 015650 167 -----------------------RCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLC 220 (403)
Q Consensus 167 -----------------------~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 220 (403)
++++.|. |...|.++.|+.++.+|. .|.+|++|++...+++..| .|.+.|+++
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcV 415 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCV 415 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEE
Confidence 0223444 778899999999999888 6999999999999999998 589999999
Q ss_pred EEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC
Q 015650 221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG 300 (403)
Q Consensus 221 ~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~ 300 (403)
+|+|.++..++ +|+-|+.|+||++...++.....-..-|++++|.|||++.+.|+.+|. +++|+....+....+...
T Consensus 416 aFnPvDDryFi--SGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~-C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 416 AFNPVDDRYFI--SGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGY-CRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred EecccCCCcEe--ecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccE-EEEEEccCCeEEEeeeEe
Confidence 99998887554 378999999999999998888777789999999999999999999999 999999888776655432
Q ss_pred CC------cccEEEEEeCCCCC-EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeee
Q 015650 301 AD------RAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSV 373 (403)
Q Consensus 301 ~~------~~~v~~l~~s~d~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (403)
.+ ...|++++|.|... .|++.+.|..|+|||.++.+.+.++
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~Kf-------------------------------- 540 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKF-------------------------------- 540 (712)
T ss_pred eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhh--------------------------------
Confidence 22 23799999997443 5777789999999999887753332
Q ss_pred EEEEEeC--CCceEEEeccCCCEEEEEccCC
Q 015650 374 AQFRLVE--GSPYIVAFGHQKNTVVILGMDG 402 (403)
Q Consensus 374 ~~~~~~~--~~~~~~~fs~d~~~l~~~~~dG 402 (403)
++.. ..-....|+.||++|++|++|.
T Consensus 541 ---KG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 541 ---KGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred ---cccccCCcceeeeEccCCCEEEEeecCc
Confidence 2111 1233467999999999999874
No 87
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=5.3e-26 Score=188.63 Aligned_cols=243 Identities=13% Similarity=0.206 Sum_probs=194.1
Q ss_pred CccccCCCCCCeEEEEEc-CCC--CEEEEEc-CCcEEEEEcCCCeeEEE--EecccCcceeEEEEeeeCCeEEEeeCCCC
Q 015650 77 AESTSSSPPPTLLHISFN-QDH--GCFAAGT-DHGFRIYNCDPFREIFR--RDFERGGGIGVVEMLFRCNILALVGGGPD 150 (403)
Q Consensus 77 ~~~~~~~~~~~i~~i~~s-~d~--~~l~~~~-~~~i~iw~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~s~~~d 150 (403)
...+..+|.++|.+++|. ++. ..|++++ |.++++|.++.+..... ... .+|...|.++...+++..+++++-|
T Consensus 136 ~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~-~GHk~~V~sVsv~~sgtr~~SgS~D 214 (423)
T KOG0313|consen 136 SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVC-RGHKRSVDSVSVDSSGTRFCSGSWD 214 (423)
T ss_pred eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHh-cccccceeEEEecCCCCeEEeeccc
Confidence 347789999999988884 332 3467766 77799999876654321 222 3899999999999999999999999
Q ss_pred CCCCCceEEEEECCC-------------------------CceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcC
Q 015650 151 PQYPLNKVMIWDDHQ-------------------------SRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFA 202 (403)
Q Consensus 151 ~~~~~~~i~iwd~~~-------------------------~~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~ 202 (403)
..|+||+..+ +.++..+. |.++|.++.|.+....+. .|.+|+.||+.
T Consensus 215 -----~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDle 289 (423)
T KOG0313|consen 215 -----TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLE 289 (423)
T ss_pred -----ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEee
Confidence 9999999321 22455666 999999999998555444 59999999999
Q ss_pred CceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc----eeEEeecCCceEEEEEcCCC-CEEEEEe
Q 015650 203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQDG-QLLATSS 277 (403)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~----~~~~~~~~~~i~~~~~sp~g-~~l~s~~ 277 (403)
++..+.++.+ ...+.++.+++..+ ++++ |+.|..|++||.+++. ...+.+|.+.|.++.|+|.. ..|++++
T Consensus 290 tg~~~~~~~~-~ksl~~i~~~~~~~--Ll~~-gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S 365 (423)
T KOG0313|consen 290 TGGLKSTLTT-NKSLNCISYSPLSK--LLAS-GSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS 365 (423)
T ss_pred cccceeeeec-CcceeEeecccccc--eeee-cCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe
Confidence 9998888764 44567777777544 4554 6789999999999843 35678999999999999955 5678999
Q ss_pred CCCcEEEEEEcCCCc-EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650 278 TKGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (403)
Q Consensus 278 ~dg~~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~ 333 (403)
.|++ +++||+++.+ ++..+.+ |...|.++.|. ++.+|++|+.|.+|+|+.-.
T Consensus 366 ~D~t-~klWDvRS~k~plydI~~--h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 366 YDNT-VKLWDVRSTKAPLYDIAG--HNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCCe-EEEEEeccCCCcceeecc--CCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 9999 9999999887 8888886 67899999996 57799999999999998754
No 88
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=4.8e-26 Score=212.40 Aligned_cols=251 Identities=17% Similarity=0.170 Sum_probs=203.0
Q ss_pred ccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCC------C----------eeEEEEecccCcceeEEEEeeeCC
Q 015650 78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP------F----------REIFRRDFERGGGIGVVEMLFRCN 140 (403)
Q Consensus 78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~------~----------~~~~~~~~~~~~~~~v~~~~~~~~ 140 (403)
......|.+.|+|+.|+|||++||+|+|+. |.||.... . .-.....+. +|...|..+.|+|+
T Consensus 62 l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~Wsp~ 140 (942)
T KOG0973|consen 62 LCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNWSPD 140 (942)
T ss_pred heeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceeccCCC
Confidence 355678999999999999999999999887 99999862 0 011234555 79999999999999
Q ss_pred eEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCC-
Q 015650 141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIAN- 215 (403)
Q Consensus 141 ~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~- 215 (403)
+.++++++.| ++|.|||..+.+.+..++ |...|..+.|.|-|++++ .|++|++|++.+....+.+..+..
T Consensus 141 ~~~lvS~s~D-----nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~ 215 (942)
T KOG0973|consen 141 DSLLVSVSLD-----NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE 215 (942)
T ss_pred ccEEEEeccc-----ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh
Confidence 9999999999 999999999999999999 999999999999999999 489999999887766666654332
Q ss_pred -----CceeEEEeeCCCeEEEEeeCC---ccCeEEEEEccCCc-eeEEeecCCceEEEEEcCC-------------CC--
Q 015650 216 -----PKGLCAVSQGVGSLVLVCPGL---QKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD-------------GQ-- 271 (403)
Q Consensus 216 -----~~~~~~~~~~~~~~~~~~~g~---~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~-------------g~-- 271 (403)
...-+.|+|||+. +++... .-..+.|.+-.+-. -..+.+|..++.+++|+|. ..
T Consensus 216 ~~~~T~f~RlSWSPDG~~--las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 216 SPLTTFFLRLSWSPDGHH--LASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred CCCcceeeecccCCCcCe--ecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence 2345778888875 444222 23457777765533 4668899999999999981 11
Q ss_pred --EEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650 272 --LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (403)
Q Consensus 272 --~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~ 338 (403)
.+|+|+.|++ |.||.....+++..+..- ....|.+++|+|||..|++++.||+|.++.++..+--
T Consensus 294 y~i~AvgSqDrS-lSVW~T~~~RPl~vi~~l-f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 294 YCIAAVGSQDRS-LSVWNTALPRPLFVIHNL-FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELG 360 (942)
T ss_pred eEEEEEecCCcc-EEEEecCCCCchhhhhhh-hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhC
Confidence 6789999999 999998877777665532 4568999999999999999999999999999876643
No 89
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=4.5e-26 Score=204.30 Aligned_cols=237 Identities=17% Similarity=0.266 Sum_probs=208.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEE
Q 015650 84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (403)
Q Consensus 84 ~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd 162 (403)
..+-+.+..|-|.++++++|.++| +.|||+...... .+.+ .|...++.++..|++..+++++.| .+|++||
T Consensus 411 ~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~--Eti~-AHdgaIWsi~~~pD~~g~vT~saD-----ktVkfWd 482 (888)
T KOG0306|consen 411 TCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLV--ETIR-AHDGAIWSISLSPDNKGFVTGSAD-----KTVKFWD 482 (888)
T ss_pred ccccEEEEEecCCCceEEEeccCCceEEEEeehhhhh--hhhh-ccccceeeeeecCCCCceEEecCC-----cEEEEEe
Confidence 344889999999999999999877 999999876654 4454 799999999999999999999999 9999999
Q ss_pred CCC-----Cce--------eEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCC
Q 015650 163 DHQ-----SRC--------IGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV 226 (403)
Q Consensus 163 ~~~-----~~~--------~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (403)
..- |.. .++++....|.++.++||+++++ .|+++++|-+.+.+..-.+.+|.-++.++.++|++
T Consensus 483 f~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS 562 (888)
T KOG0306|consen 483 FKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS 562 (888)
T ss_pred EEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCc
Confidence 632 111 13444678999999999999999 59999999999999999999999999999999998
Q ss_pred CeEEEEeeCCccCeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCccc
Q 015650 227 GSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE 305 (403)
Q Consensus 227 ~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~ 305 (403)
+ ++++ |+.|..|++|-++-+.+ +.+.+|...|.++.|-|+...+.+++.|+. |+-||-...++++++.+ |...
T Consensus 563 k--livT-gSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~k-vKqWDg~kFe~iq~L~~--H~~e 636 (888)
T KOG0306|consen 563 K--LIVT-GSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGK-VKQWDGEKFEEIQKLDG--HHSE 636 (888)
T ss_pred C--eEEe-ccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcce-EEeechhhhhhheeecc--chhe
Confidence 7 3444 66899999999998655 568899999999999999999999999999 99999999999999997 6689
Q ss_pred EEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (403)
Q Consensus 306 v~~l~~s~d~~~l~s~~~dg~v~iwd~~~ 334 (403)
|++++.+|+|.++++++.|.+|++|.-..
T Consensus 637 v~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 637 VWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 99999999999999999999999998655
No 90
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=4.4e-24 Score=197.01 Aligned_cols=217 Identities=10% Similarity=0.118 Sum_probs=166.0
Q ss_pred cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCceEEEEECCCCc--------eeEEEe-cCC
Q 015650 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSR--------CIGELS-FRS 176 (403)
Q Consensus 107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~i~iwd~~~~~--------~~~~~~-~~~ 176 (403)
.|++|+...... ...+. +|...|.++.|+|+ ...+++++.| +.|+|||+.++. ++..+. |..
T Consensus 55 vI~L~~~~r~~~--v~~L~-gH~~~V~~lafsP~~~~lLASgS~D-----gtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 55 AIRLENQMRKPP--VIKLK-GHTSSILDLQFNPCFSEILASGSED-----LTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred EEEeeecCCCce--EEEEc-CCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCCCCccccccccceEEeecCCC
Confidence 389998765433 35665 79999999999996 7889999999 999999997642 234555 889
Q ss_pred ceeEEEEecCceEE-E---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-
Q 015650 177 EVRSVKLRRDRIIV-V---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT- 251 (403)
Q Consensus 177 ~i~~~~~~~~~~~~-~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~- 251 (403)
.|.+++|+|++..+ + .|++|++||+++++.+..+. +...+..++|++++.. +++ ++.|+.|+|||++++..
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~l--Lat-~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNL--LSG-TCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCE--EEE-EecCCEEEEEECCCCcEE
Confidence 99999999988644 3 48999999999988777775 4567889999998873 443 34789999999998654
Q ss_pred eEEeecCCceEE-----EEEcCCCCEEEEEeCCC----cEEEEEEcCC-CcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 015650 252 KFIMAHDSRIAC-----FALTQDGQLLATSSTKG----TLVRIFNTLD-GTLLQEVRRGADRAEIYSLAFSSNAQWLAVS 321 (403)
Q Consensus 252 ~~~~~~~~~i~~-----~~~sp~g~~l~s~~~dg----~~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~ 321 (403)
..+.+|.+.+.+ ..|++++.+|++++.++ . |+|||+++ .+++..+....+.+.+......++|.++++|
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~-VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG 281 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMRE-MKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIG 281 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccE-EEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEE
Confidence 557788876443 34568999999988764 6 99999985 5666666543333444444445668899999
Q ss_pred eCCCcEEEEEeecCC
Q 015650 322 SDKGTVHVFNLKVNS 336 (403)
Q Consensus 322 ~~dg~v~iwd~~~~~ 336 (403)
+.|+.|++|++..+.
T Consensus 282 kGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 282 KGDGNCRYYQHSLGS 296 (568)
T ss_pred ECCCeEEEEEccCCc
Confidence 999999999998754
No 91
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.1e-26 Score=200.84 Aligned_cols=242 Identities=16% Similarity=0.287 Sum_probs=197.5
Q ss_pred CCCCeE---EEEEc-CCCCEEEEEcCCc-EEEEEcCCCeeE----EEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650 84 PPPTLL---HISFN-QDHGCFAAGTDHG-FRIYNCDPFREI----FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (403)
Q Consensus 84 ~~~~i~---~i~~s-~d~~~l~~~~~~~-i~iw~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~ 154 (403)
|...|. .+..+ |.+++|.+|+.++ |++|++...... +...++ .|...+..+....++..+++++.|
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~tlIS~SsD---- 94 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKTLISASSD---- 94 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCceEEecCC----
Confidence 444455 44443 5678899998555 999998644332 345665 789999999999999999999999
Q ss_pred CceEEEEECCCC--ceeEEEe-cCCceeEEEE-ecCceEEE---ecCeEEEEEcCCc--eeeeE--------ee-ccCCC
Q 015650 155 LNKVMIWDDHQS--RCIGELS-FRSEVRSVKL-RRDRIIVV---LEQKIFVYNFADL--KLLHQ--------IE-TIANP 216 (403)
Q Consensus 155 ~~~i~iwd~~~~--~~~~~~~-~~~~i~~~~~-~~~~~~~~---~d~~i~i~d~~~~--~~~~~--------~~-~~~~~ 216 (403)
.+|++|+...+ -++.++. |...|.++++ .++..+++ .|+.|++||++++ +.+.. +. ++...
T Consensus 95 -tTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s 173 (735)
T KOG0308|consen 95 -TTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS 173 (735)
T ss_pred -ceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence 99999999877 4666776 9999999999 67777777 4899999999977 22222 22 55667
Q ss_pred ceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEE
Q 015650 217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295 (403)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~ 295 (403)
++.++.++.+ .+++ +|+..+.+++||.++ +++..+.+|...|.++..++||..+++++.||+ |++||+...+++.
T Consensus 174 iYSLA~N~t~--t~iv-sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQrCl~ 249 (735)
T KOG0308|consen 174 IYSLAMNQTG--TIIV-SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQRCLA 249 (735)
T ss_pred eeeeecCCcc--eEEE-ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccccceee
Confidence 7777777766 3444 466889999999998 567778899999999999999999999999999 9999999999999
Q ss_pred EEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650 296 EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 296 ~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
++.. |...|+++..+|+=.++++|+.||.|+.=|+++...
T Consensus 250 T~~v--H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 250 TYIV--HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred eEEe--ccCceEEEeeCCCcceEEecCCCCcEEecccCCchh
Confidence 9886 677899999999999999999999999999998643
No 92
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=1.9e-24 Score=171.48 Aligned_cols=230 Identities=15% Similarity=0.164 Sum_probs=195.3
Q ss_pred CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcC
Q 015650 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA 202 (403)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~ 202 (403)
+|..+++.+.|+.++.+|.+++.| .+..+|-..+|+.+.++. |.+.|+++....+...++ .|.++++||.+
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD-----~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKD-----STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cCccccceEEecCCCcEEEEecCC-----CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 799999999999999999999999 999999988999999999 999999999999988888 59999999999
Q ss_pred CceeeeEeeccCCCceeEEEeeCCCeEEEEe--eCCccCeEEEEEccC--------CceeEEeecCCceEEEEEcCCCCE
Q 015650 203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVC--PGLQKGQVRVEHYAS--------KRTKFIMAHDSRIACFALTQDGQL 272 (403)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~d~~i~v~d~~~--------~~~~~~~~~~~~i~~~~~sp~g~~ 272 (403)
+|+++..++. ..++..+.|+++++..++.+ .-...+.|.++|++. .+...+..+...++.+-|.|-+++
T Consensus 83 tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 83 TGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred CCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 9999999875 56788999999987654443 112457899999984 225667788899999999999999
Q ss_pred EEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCc
Q 015650 273 LATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP 352 (403)
Q Consensus 273 l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (403)
|++|..||. |.+||+++|+.+..-.. .|...|+.|++++|..++++++.|.+-++||+.+-+...
T Consensus 162 ii~Ghe~G~-is~~da~~g~~~v~s~~-~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K------------- 226 (327)
T KOG0643|consen 162 IIAGHEDGS-ISIYDARTGKELVDSDE-EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK------------- 226 (327)
T ss_pred EEEecCCCc-EEEEEcccCceeeechh-hhccccccccccCCcceEEecccCccceeeeccceeeEE-------------
Confidence 999999999 99999999865544322 277899999999999999999999999999999987321
Q ss_pred ccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEcc
Q 015650 353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM 400 (403)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~ 400 (403)
-...+.+|++.+++|-...++.|+.
T Consensus 227 -----------------------ty~te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 227 -----------------------TYTTERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred -----------------------EeeecccccceecccccceEEecCC
Confidence 2233568999999998777776653
No 93
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=3.7e-25 Score=187.87 Aligned_cols=249 Identities=12% Similarity=0.163 Sum_probs=191.2
Q ss_pred CccccCCCCCCeEEEEEcCCCCEE-EEEcCCc-EEEEEcCCCeeEE--------EEecccCcceeEEEEeeeCC-eEEEe
Q 015650 77 AESTSSSPPPTLLHISFNQDHGCF-AAGTDHG-FRIYNCDPFREIF--------RRDFERGGGIGVVEMLFRCN-ILALV 145 (403)
Q Consensus 77 ~~~~~~~~~~~i~~i~~s~d~~~l-~~~~~~~-i~iw~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~-~~~~~ 145 (403)
+......|.+.|+.+.+.|....| |+++.++ |.|||........ ...+. +|...-.+++|+.. ...++
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~-gH~~eg~glsWn~~~~g~Ll 194 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK-GHEKEGYGLSWNRQQEGTLL 194 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEE-eecccccccccccccceeEe
Confidence 345566799999999999987555 5556666 9999985432221 12444 56666677888775 44677
Q ss_pred eCCCCCCCCCceEEEEECCCCce-------eEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcC--CceeeeEee
Q 015650 146 GGGPDPQYPLNKVMIWDDHQSRC-------IGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFA--DLKLLHQIE 211 (403)
Q Consensus 146 s~~~d~~~~~~~i~iwd~~~~~~-------~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~--~~~~~~~~~ 211 (403)
+++.| +.|++||+..... ...+. |...|..++|++-...++ .|+.+.|||++ +.+..+...
T Consensus 195 s~~~d-----~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 195 SGSDD-----HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred eccCC-----CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc
Confidence 88888 9999999865432 33445 899999999999654333 48899999999 566677788
Q ss_pred ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeEEeecCCceEEEEEcCC-CCEEEEEeCCCcEEEEEEc
Q 015650 212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNT 288 (403)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~-g~~l~s~~~dg~~i~iwd~ 288 (403)
.|...+.+++|+|.+.. ++|+ |+.|++|.+||+|+ .++..+.+|...|.++.|+|+ ...||+++.|+. +.|||+
T Consensus 270 ah~~~vn~~~fnp~~~~-ilAT-~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDl 346 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFNEF-ILAT-GSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDL 346 (422)
T ss_pred ccCCceeEEEeCCCCCc-eEEe-ccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEec
Confidence 99999999999999864 3454 66899999999998 667888999999999999995 467899999999 999998
Q ss_pred CCCcE------------EEEEecCCCcccEEEEEeCCCCCE-EEEEeCCCcEEEEEeec
Q 015650 289 LDGTL------------LQEVRRGADRAEIYSLAFSSNAQW-LAVSSDKGTVHVFNLKV 334 (403)
Q Consensus 289 ~~~~~------------~~~~~~~~~~~~v~~l~~s~d~~~-l~s~~~dg~v~iwd~~~ 334 (403)
..-.. -..|.-+.|...|..+.|+|+..+ |++.++|+.++||+...
T Consensus 347 s~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 347 SRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 64211 112333448899999999998875 67888999999999873
No 94
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.5e-25 Score=186.57 Aligned_cols=278 Identities=15% Similarity=0.207 Sum_probs=213.1
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeE-EEeeCCCCCCCCCceE
Q 015650 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKV 158 (403)
Q Consensus 81 ~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~i 158 (403)
...-.+.|++|.|+|...+|.+++ |+.++||.++.........+. -...+|....|.+++. .++++++. ..+
T Consensus 209 ~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rr-----ky~ 282 (514)
T KOG2055|consen 209 AHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRR-----KYL 282 (514)
T ss_pred CCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee-eccCccceeeecCCCceEEEecccc-----eEE
Confidence 344567899999999999988887 777999999866555445554 4667899999999988 78888887 899
Q ss_pred EEEECCCCceeEEEe----cCCceeEEEEecCceEEEe---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650 159 MIWDDHQSRCIGELS----FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (403)
Q Consensus 159 ~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (403)
+.||+.+.+..+.-. ....+.....++++.+++. .|.|.+....+++.+..++. .+.+..++|+.+++.++
T Consensus 283 ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~- 360 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELL- 360 (514)
T ss_pred EEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEE-
Confidence 999998886544332 2346778899999999883 77899999999999988864 56678899998886544
Q ss_pred EeeCCccCeEEEEEccCCceeEEeecCCce--EEEEEcCCCCEEEEEeCCCcEEEEEEcCC------CcEEEEEecCCCc
Q 015650 232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRI--ACFALTQDGQLLATSSTKGTLVRIFNTLD------GTLLQEVRRGADR 303 (403)
Q Consensus 232 ~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i--~~~~~sp~g~~l~s~~~dg~~i~iwd~~~------~~~~~~~~~~~~~ 303 (403)
++ | .+|.|.+||++...+.......+.| ++++.+++|.|||+|+..|. |.|||..+ .+++..+.. -.
T Consensus 361 ~~-~-~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi-VNIYd~~s~~~s~~PkPik~~dN--Lt 435 (514)
T KOG2055|consen 361 AS-G-GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI-VNIYDGNSCFASTNPKPIKTVDN--LT 435 (514)
T ss_pred EE-c-CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcce-EEEeccchhhccCCCCchhhhhh--hh
Confidence 43 2 5789999999997655443334433 56788899999999999999 99999654 345555543 34
Q ss_pred ccEEEEEeCCCCCEEEEEe--CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCC
Q 015650 304 AEIYSLAFSSNAQWLAVSS--DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG 381 (403)
Q Consensus 304 ~~v~~l~~s~d~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (403)
..|++|+|++|+++||.++ .+..+++-.+.+-.... .|... -.+-+
T Consensus 436 t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFs------------------------------NfP~~--n~~vg 483 (514)
T KOG2055|consen 436 TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFS------------------------------NFPTS--NTKVG 483 (514)
T ss_pred eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeec------------------------------cCCCC--CCccc
Confidence 6899999999999998887 57789999988766321 11111 11235
Q ss_pred CceEEEeccCCCEEEEEccCCC
Q 015650 382 SPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 382 ~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
.|++++|||.|.+||+|.++|.
T Consensus 484 ~vtc~aFSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 484 HVTCMAFSPNSGYLAVGNEAGR 505 (514)
T ss_pred ceEEEEecCCCceEEeecCCCc
Confidence 7999999999999999999883
No 95
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=4.3e-26 Score=185.69 Aligned_cols=241 Identities=17% Similarity=0.281 Sum_probs=211.2
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (403)
..+.-+..+|.|+.|+.|...||+|+ |+.|+||.+.++.++ +.+...|...|+++.|+.|+..+.+++.| .+
T Consensus 257 d~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~Cl--RrFdrAHtkGvt~l~FSrD~SqiLS~sfD-----~t 329 (508)
T KOG0275|consen 257 DNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCL--RRFDRAHTKGVTCLSFSRDNSQILSASFD-----QT 329 (508)
T ss_pred cceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHH--HHhhhhhccCeeEEEEccCcchhhccccc-----ce
Confidence 55777999999999999999999999 555999999999877 77777899999999999999999999999 99
Q ss_pred EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCC--CceeEEEeeCCCeEEE
Q 015650 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIAN--PKGLCAVSQGVGSLVL 231 (403)
Q Consensus 158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 231 (403)
++|--++.|++++++. |...|+...|.+||..++ +||+|++|+..+.+++.+++.... ++..+-+-|.+...++
T Consensus 330 vRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~i 409 (508)
T KOG0275|consen 330 VRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFI 409 (508)
T ss_pred EEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEE
Confidence 9999999999999999 999999999999999888 599999999999999999875443 4555666666666667
Q ss_pred EeeCCccCeEEEEEccCCceeEEee---cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650 232 VCPGLQKGQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308 (403)
Q Consensus 232 ~~~g~~d~~i~v~d~~~~~~~~~~~---~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 308 (403)
+| ...++|++.++..+.++.+.. ..+...+..++|.|.++++.+.|+. ++.|.+.+|++.+++.. |+..|-.
T Consensus 410 VC--Nrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~v-lYCF~~~sG~LE~tl~V--hEkdvIG 484 (508)
T KOG0275|consen 410 VC--NRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGV-LYCFSVLSGKLERTLPV--HEKDVIG 484 (508)
T ss_pred EE--cCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcE-EEEEEeecCceeeeeec--ccccccc
Confidence 76 467899999998887777653 3455667789999999999999999 99999999999999886 7788999
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEE
Q 015650 309 LAFSSNAQWLAVSSDKGTVHVFN 331 (403)
Q Consensus 309 l~~s~d~~~l~s~~~dg~v~iwd 331 (403)
++-+|..+.||+-++||.+++|.
T Consensus 485 l~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 485 LTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccCcccchhhhhcccchhhhcC
Confidence 99999999999999999999995
No 96
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9e-24 Score=171.85 Aligned_cols=239 Identities=14% Similarity=0.152 Sum_probs=188.3
Q ss_pred EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE-----ecCe
Q 015650 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-----LEQK 195 (403)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-----~d~~ 195 (403)
+.+. .....+.++.|+.++..+++++.| ..|+|||..+++.++++. ++..+..++|......+. .|.+
T Consensus 8 k~f~-~~~~~i~sl~fs~~G~~litss~d-----Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 8 KVFR-ETNGKINSLDFSDDGLLLITSSED-----DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred cccc-cCCCceeEEEecCCCCEEEEecCC-----CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence 3443 356789999999999999998887 899999999999999998 777888899977655444 3789
Q ss_pred EEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEE
Q 015650 196 IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLAT 275 (403)
Q Consensus 196 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s 275 (403)
|+..++.+.+.++.|.+|...|..++++|.++.+ .+ ++.|++|++||++..+.+.+..- ..-..++|+|.|-++|+
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~F--lS-~S~D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTF--LS-SSLDKTVRLWDLRVKKCQGLLNL-SGRPIAAFDPEGLIFAL 157 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeE--Ee-cccCCeEEeeEecCCCCceEEec-CCCcceeECCCCcEEEE
Confidence 9999999999999999999999999999998643 32 46899999999997665544322 22345789999999999
Q ss_pred EeCCCcEEEEEEcCCC--cEEEEEecC-CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCc
Q 015650 276 SSTKGTLVRIFNTLDG--TLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP 352 (403)
Q Consensus 276 ~~~dg~~i~iwd~~~~--~~~~~~~~~-~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (403)
+...+. |++||+++. .+..++... ......+.|.|||||++|+.+...+.+++.|.-+|....++.
T Consensus 158 ~~~~~~-IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs---------- 226 (311)
T KOG1446|consen 158 ANGSEL-IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS---------- 226 (311)
T ss_pred ecCCCe-EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe----------
Confidence 988877 999999864 344444432 234689999999999999999999999999999887422221
Q ss_pred ccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
.............|+||++++++|+.||+
T Consensus 227 ----------------------~~~~~~~~~~~a~ftPds~Fvl~gs~dg~ 255 (311)
T KOG1446|consen 227 ----------------------GYPNAGNLPLSATFTPDSKFVLSGSDDGT 255 (311)
T ss_pred ----------------------eccCCCCcceeEEECCCCcEEEEecCCCc
Confidence 11111112245789999999999999995
No 97
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=9.4e-24 Score=194.83 Aligned_cols=176 Identities=7% Similarity=0.103 Sum_probs=142.4
Q ss_pred ceEEEEECCCCceeEEEe-cCCceeEEEEecC-ceEEE---ecCeEEEEEcCCce--------eeeEeeccCCCceeEEE
Q 015650 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD-RIIVV---LEQKIFVYNFADLK--------LLHQIETIANPKGLCAV 222 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~-~~~~~---~d~~i~i~d~~~~~--------~~~~~~~~~~~~~~~~~ 222 (403)
+.|++|+......+..+. |...|.+++|+|+ +.+++ .|++|++||+.++. .+..+.+|...+..++|
T Consensus 54 gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf 133 (568)
T PTZ00420 54 GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW 133 (568)
T ss_pred eEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEE
Confidence 899999988877777887 9999999999996 56666 49999999997642 23456788899999999
Q ss_pred eeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCC
Q 015650 223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD 302 (403)
Q Consensus 223 ~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~ 302 (403)
+|++..++ ++ ++.|+.|++||++++.......|...|.+++|+|+|.+|++++.|+. |+|||+++++.+.++.+ |
T Consensus 134 ~P~g~~iL-aS-gS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~-IrIwD~Rsg~~i~tl~g--H 208 (568)
T PTZ00420 134 NPMNYYIM-CS-SGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKH-MHIIDPRKQEIASSFHI--H 208 (568)
T ss_pred CCCCCeEE-EE-EeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCE-EEEEECCCCcEEEEEec--c
Confidence 99876533 33 34799999999998765433346778999999999999999999999 99999999999988886 4
Q ss_pred cccE-----EEEEeCCCCCEEEEEeCCC----cEEEEEeecCC
Q 015650 303 RAEI-----YSLAFSSNAQWLAVSSDKG----TVHVFNLKVNS 336 (403)
Q Consensus 303 ~~~v-----~~l~~s~d~~~l~s~~~dg----~v~iwd~~~~~ 336 (403)
.+.+ ....|++++.+|++++.|+ .|+|||+++..
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~ 251 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT 251 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC
Confidence 4433 3345678999999988764 79999999644
No 98
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=4.5e-24 Score=168.84 Aligned_cols=243 Identities=16% Similarity=0.220 Sum_probs=201.6
Q ss_pred CCCccccCCCCCCeEEEEEcCC-CCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCC
Q 015650 75 SPAESTSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152 (403)
Q Consensus 75 ~~~~~~~~~~~~~i~~i~~s~d-~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 152 (403)
........+|.+.|-.++|.|. ..+|++++ ++.|++||+...++....... ..-.-+.|+|++.+++.++.|
T Consensus 54 ~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~----~eni~i~wsp~g~~~~~~~kd-- 127 (313)
T KOG1407|consen 54 FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK----GENINITWSPDGEYIAVGNKD-- 127 (313)
T ss_pred hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc----CcceEEEEcCCCCEEEEecCc--
Confidence 3344668899999999999875 45677666 677999999988877443332 333557789999999999998
Q ss_pred CCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-e--cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (403)
Q Consensus 153 ~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (403)
..|.+.|.++.+.+...+....+..++|+.++.+++ . .|+|.|......+.++.++.|.....++.|+|+|+
T Consensus 128 ---D~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr-- 202 (313)
T KOG1407|consen 128 ---DRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR-- 202 (313)
T ss_pred ---ccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCc--
Confidence 899999999999998888888899999997776665 3 57999999999999999999987777777777776
Q ss_pred EEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650 230 VLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308 (403)
Q Consensus 230 ~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 308 (403)
++|+ |+.|..+.+||+.. -..+.+..+.-+|..+.|+-||++||++++|.. |-|=++++|..+.++. +.++...
T Consensus 203 yfA~-GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~-IDIA~vetGd~~~eI~---~~~~t~t 277 (313)
T KOG1407|consen 203 YFAT-GSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHF-IDIAEVETGDRVWEIP---CEGPTFT 277 (313)
T ss_pred eEee-ccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccce-EEeEecccCCeEEEee---ccCCcee
Confidence 6675 66899999999988 455677889999999999999999999999999 9999999999999998 7789999
Q ss_pred EEeCCCCCEEEEEeCC---------CcEEEEEee
Q 015650 309 LAFSSNAQWLAVSSDK---------GTVHVFNLK 333 (403)
Q Consensus 309 l~~s~d~~~l~s~~~d---------g~v~iwd~~ 333 (403)
++|+|...+||-+++| |.|++|-+.
T Consensus 278 VAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 278 VAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred EEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 9999999999887754 456666544
No 99
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=183.15 Aligned_cols=226 Identities=18% Similarity=0.284 Sum_probs=192.1
Q ss_pred eeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCce
Q 015650 130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK 205 (403)
Q Consensus 130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~ 205 (403)
..+.++...+....+.+++.| ..+.++|...++.+..++ |...|..+.++++...+. .|..|++|......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d-----~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGED-----KTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCC-----CceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence 356677776666678889988 899999999999999999 999999999999988777 58899999988877
Q ss_pred eeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecC---CceEEEEEcCCCCEEEEEeCCCcE
Q 015650 206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD---SRIACFALTQDGQLLATSSTKGTL 282 (403)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~---~~i~~~~~sp~g~~l~s~~~dg~~ 282 (403)
.......|..++..+..+|.++.++-+ +.|+...+.|++.+.......++ -.+++.+|+|||.+|.+|..|+.
T Consensus 295 ~~~~~~~h~~~V~~ls~h~tgeYllsA---s~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~- 370 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPTGEYLLSA---SNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGV- 370 (506)
T ss_pred CccccccccccceeeeeccCCcEEEEe---cCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCce-
Confidence 777788999999999999999865443 48999999999998776655554 35899999999999999999999
Q ss_pred EEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccccc
Q 015650 283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGV 362 (403)
Q Consensus 283 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (403)
|+|||+.+...+..|.+ |.++|..|+|+.+|-||+++++|+.|++||++..++.+++
T Consensus 371 vkiwdlks~~~~a~Fpg--ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~--------------------- 427 (506)
T KOG0289|consen 371 VKIWDLKSQTNVAKFPG--HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI--------------------- 427 (506)
T ss_pred EEEEEcCCccccccCCC--CCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee---------------------
Confidence 99999999998888886 8899999999999999999999999999999998864443
Q ss_pred ccceeeeeeeeEEEEEeC-CCceEEEeccCCCEEEEEccC
Q 015650 363 LPKYFSSEWSVAQFRLVE-GSPYIVAFGHQKNTVVILGMD 401 (403)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~-~~~~~~~fs~d~~~l~~~~~d 401 (403)
.+.+ ..+..+.|...|.+|++++.|
T Consensus 428 --------------~l~~~~~v~s~~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 428 --------------QLDEKKEVNSLSFDQSGTYLGIAGSD 453 (506)
T ss_pred --------------eccccccceeEEEcCCCCeEEeecce
Confidence 2222 246778888888888887654
No 100
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=4.6e-25 Score=189.93 Aligned_cols=206 Identities=16% Similarity=0.225 Sum_probs=159.3
Q ss_pred EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc----eeEEEe--cCCceeEEEEecCceEEE---e
Q 015650 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR----CIGELS--FRSEVRSVKLRRDRIIVV---L 192 (403)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~----~~~~~~--~~~~i~~~~~~~~~~~~~---~ 192 (403)
..+. +|...|.++.+.+.|..+++|+.| ..|++||+.... ..+.+. ....|.++.|++.+..++ .
T Consensus 161 i~l~-hgtk~Vsal~~Dp~GaR~~sGs~D-----y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 161 IQLK-HGTKIVSALAVDPSGARFVSGSLD-----YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred Eecc-CCceEEEEeeecCCCceeeecccc-----ceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence 4565 788899999999999999999999 999999986542 233343 456899999999875544 3
Q ss_pred cCeEEEEEcCCceeee------------EeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC--ceeEEe---
Q 015650 193 EQKIFVYNFADLKLLH------------QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIM--- 255 (403)
Q Consensus 193 d~~i~i~d~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~--~~~~~~--- 255 (403)
....+++|....+.+. .-++|...+.+-+|+|..+..++.+ +.||++++||+... +.+.+.
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~--s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC--SYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe--cCCCcEEEEecCCchhheeEEeecc
Confidence 5689999954332222 2245667778899999999988876 58999999999872 233332
Q ss_pred --ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc--EEEEEecCCCcc--cEEEEEeCCCCCEEEEEeCCCcEEE
Q 015650 256 --AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT--LLQEVRRGADRA--EIYSLAFSSNAQWLAVSSDKGTVHV 329 (403)
Q Consensus 256 --~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~--~~~~~~~~~~~~--~v~~l~~s~d~~~l~s~~~dg~v~i 329 (403)
+..-+++.++|++||++||+|+.||. |.+|+..+.. ....++. +|.. .|++|.||+||++|++-+.|+++++
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~~v~p~~~vk~-AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSRTVRPVMKVKD-AHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred CCCcccCceeeecCCCcchhhhcccCCc-eeeeecCCcccccceEeee-ccCCCCceeEEEeccccchhhhccCCCceee
Confidence 23446899999999999999999999 9999975432 2222322 3554 8999999999999999999999999
Q ss_pred EEeecCCC
Q 015650 330 FNLKVNSG 337 (403)
Q Consensus 330 wd~~~~~~ 337 (403)
||++..+.
T Consensus 391 WDLrq~kk 398 (641)
T KOG0772|consen 391 WDLRQFKK 398 (641)
T ss_pred eecccccc
Confidence 99998874
No 101
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.4e-25 Score=197.20 Aligned_cols=274 Identities=14% Similarity=0.209 Sum_probs=207.4
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeE--EEEecc--cCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEE
Q 015650 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREI--FRRDFE--RGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVM 159 (403)
Q Consensus 85 ~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~--~~~~~~--~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~ 159 (403)
...+++|..+++-..|++++...++||.+.+.... +...+. ......+..+.|.. ...++++++.. |.|.
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~n-----G~i~ 113 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTN-----GVIS 113 (839)
T ss_pred ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCC-----CcEE
Confidence 45567788889988898888888899988654322 112211 01223344555653 34567777777 9999
Q ss_pred EEECCC---CceeEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650 160 IWDDHQ---SRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (403)
Q Consensus 160 iwd~~~---~~~~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (403)
+||+.. .+.+..|. |...+.++.|++-...++ -||+|++||++..+-..++.+....+..+.|+|.....+.
T Consensus 114 vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~ 193 (839)
T KOG0269|consen 114 VWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFA 193 (839)
T ss_pred EEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEE
Confidence 999987 45666776 999999999998654444 4999999999998888888888889999999998766554
Q ss_pred EeeCCccCeEEEEEccC--CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE--EEEEecCCCcccEE
Q 015650 232 VCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--LQEVRRGADRAEIY 307 (403)
Q Consensus 232 ~~~g~~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~--~~~~~~~~~~~~v~ 307 (403)
+ +.+.|.+++||++. .....+.+|.++|.|+.|+|++.+||+|+.|+. |+|||+.+.+. +.++. ...+|.
T Consensus 194 s--~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~~~~~~tIn---Tiapv~ 267 (839)
T KOG0269|consen 194 S--IHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSRAKPKHTIN---TIAPVG 267 (839)
T ss_pred E--ecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCCccceeEEe---ecceee
Confidence 4 46889999999998 345667899999999999999999999999999 99999986543 34444 347899
Q ss_pred EEEeCCCCCE-EEEEe--CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCce
Q 015650 308 SLAFSSNAQW-LAVSS--DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384 (403)
Q Consensus 308 ~l~~s~d~~~-l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (403)
++.|-|..++ ||+++ .|-.|+|||++.+= +| +..+.-|...++
T Consensus 268 rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY--------------------------IP--------~~t~~eH~~~vt 313 (839)
T KOG0269|consen 268 RVKWRPARSYHLATCSMVVDTSVHVWDVRRPY--------------------------IP--------YATFLEHTDSVT 313 (839)
T ss_pred eeeeccCccchhhhhhccccceEEEEeecccc--------------------------cc--------ceeeeccCcccc
Confidence 9999998875 66665 67889999998753 22 334555667788
Q ss_pred EEEec-cCCCEEEEEccCCC
Q 015650 385 IVAFG-HQKNTVVILGMDGR 403 (403)
Q Consensus 385 ~~~fs-~d~~~l~~~~~dG~ 403 (403)
.++|- .|-..|.+++.||+
T Consensus 314 ~i~W~~~d~~~l~s~sKD~t 333 (839)
T KOG0269|consen 314 GIAWDSGDRINLWSCSKDGT 333 (839)
T ss_pred ceeccCCCceeeEeecCccH
Confidence 88883 36677788888874
No 102
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.2e-24 Score=175.25 Aligned_cols=276 Identities=15% Similarity=0.224 Sum_probs=220.4
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (403)
+.+.+|.+.|+.++......++.+++ |.+.+||.++++.++ .++. +|...|.++.|++.+..+++++.| ++
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL--~~Y~-GH~GSVNsikfh~s~~L~lTaSGD-----~t 213 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACL--ATYT-GHTGSVNSIKFHNSGLLLLTASGD-----ET 213 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccce--eeec-ccccceeeEEeccccceEEEccCC-----cc
Confidence 66889999999999887777888887 777999999999877 5565 899999999999999999999998 99
Q ss_pred EEEEEC------CC------------------------------C----ceeEEEe-cCCceeEEEEecCceEEE---ec
Q 015650 158 VMIWDD------HQ------------------------------S----RCIGELS-FRSEVRSVKLRRDRIIVV---LE 193 (403)
Q Consensus 158 i~iwd~------~~------------------------------~----~~~~~~~-~~~~i~~~~~~~~~~~~~---~d 193 (403)
-.||.. .. + .++..+. |...|.+..|-..|..++ .|
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD 293 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD 293 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence 999961 11 0 1333455 777788888887777666 59
Q ss_pred CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeEEeecCCceEEEEEcCCCC
Q 015650 194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQ 271 (403)
Q Consensus 194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~g~ 271 (403)
.+..+||.++++.+..+.+|......++-+|..+ ++++ .+.|.+.++||++. ..+..+++|...|+++.|..+.+
T Consensus 294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQr--LVvT-sSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~ 370 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNILTGHDSELTHCSTHPTQR--LVVT-SSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR 370 (481)
T ss_pred ccceeeeeccCceeccccCcchhccccccCCcce--EEEE-eccCceeEeccchhhcceeeeecccccceeEEEEecCCc
Confidence 9999999999999999999999888888777654 4444 45899999999996 55677999999999999987764
Q ss_pred EEEEEeCCCcEEEEEEcCCC-cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCC
Q 015650 272 LLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPT 350 (403)
Q Consensus 272 ~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 350 (403)
+++|+.|.+ |+|||+++. .++.+++ ...+++.++.+..+.+|+.--++..|++||++-... .++
T Consensus 371 -vVSgSDDrT-vKvWdLrNMRsplATIR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl-aRl--------- 435 (481)
T KOG0300|consen 371 -VVSGSDDRT-VKVWDLRNMRSPLATIR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL-ARL--------- 435 (481)
T ss_pred -eeecCCCce-EEEeeeccccCcceeee---cCCccceeEeecCCceEEeccCCceEEEEecCCCcc-ccC---------
Confidence 789999999 999999875 4677777 457899999998888999988999999999987652 111
Q ss_pred CcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCC--CEEEEEccC
Q 015650 351 LPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK--NTVVILGMD 401 (403)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~--~~l~~~~~d 401 (403)
| -..-++|..-|++++|..+- .-|++++-|
T Consensus 436 -------------P--------rtsRqgHrRMV~c~AW~eehp~cnLftcGFD 467 (481)
T KOG0300|consen 436 -------------P--------RTSRQGHRRMVTCCAWLEEHPACNLFTCGFD 467 (481)
T ss_pred -------------C--------cccccccceeeeeeeccccCccccccccccc
Confidence 1 11135667778889997653 445555544
No 103
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=4.9e-24 Score=189.77 Aligned_cols=267 Identities=16% Similarity=0.251 Sum_probs=213.8
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEE-EeeeC-CeEEEeeCCCCCCCCC
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVE-MLFRC-NILALVGGGPDPQYPL 155 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~~~s~~~d~~~~~ 155 (403)
..+.+|...|..+++.+.. +++.++ |+++++|+-...+......+. ++...+.. ++|.+ +.-.++.++.|
T Consensus 8 ~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~-~~~g~i~~~i~y~e~~~~~l~~g~~D----- 80 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFE-GPKGFIANSICYAESDKGRLVVGGMD----- 80 (745)
T ss_pred EEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecc-cCcceeeccceeccccCcceEeeccc-----
Confidence 5678999999998887655 566666 667999997655544334555 44444443 66653 44457888888
Q ss_pred ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEE
Q 015650 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (403)
+.|.+|...+..++..++ |+..|.++....++.++. .|.++++|-. +++...+++|...+..+..-|.+ .+ +
T Consensus 81 ~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~--~~-v 155 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN--TY-V 155 (745)
T ss_pred ceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC--cE-E
Confidence 999999999999999999 999999999999998555 6999999975 57777799999999988887776 23 3
Q ss_pred eeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeC
Q 015650 233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312 (403)
Q Consensus 233 ~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s 312 (403)
+ |+.|.+|++|.- ....+++.+|...|+.+++-+++. ++++++||. |++|++ +|+++.++.+ |.+-|.++...
T Consensus 156 T-gsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir~w~~-~ge~l~~~~g--htn~vYsis~~ 228 (745)
T KOG0301|consen 156 T-GSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IRLWDL-DGEVLLEMHG--HTNFVYSISMA 228 (745)
T ss_pred e-ccCcceeeeccC-CchhhhhccchhheeeeEEecCCC-eEeecCCce-EEEEec-cCceeeeeec--cceEEEEEEec
Confidence 3 678999999986 666788999999999999998765 678999999 999998 8899888886 78999999988
Q ss_pred CCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCC
Q 015650 313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK 392 (403)
Q Consensus 313 ~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~ 392 (403)
++++.++++++|++++||+.. +. ...++++.-.++++.+-++|
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~--e~-----------------------------------~q~I~lPttsiWsa~~L~Ng 271 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD--EC-----------------------------------VQVITLPTTSIWSAKVLLNG 271 (745)
T ss_pred CCCCeEEEecCCceEEEeecC--ce-----------------------------------EEEEecCccceEEEEEeeCC
Confidence 889999999999999999988 31 33466666678777776666
Q ss_pred CEEEEEccCC
Q 015650 393 NTVVILGMDG 402 (403)
Q Consensus 393 ~~l~~~~~dG 402 (403)
. |++|+.||
T Consensus 272 D-Ivvg~SDG 280 (745)
T KOG0301|consen 272 D-IVVGGSDG 280 (745)
T ss_pred C-EEEeccCc
Confidence 5 77788887
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.5e-24 Score=169.90 Aligned_cols=249 Identities=15% Similarity=0.184 Sum_probs=195.1
Q ss_pred ccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCee-EEEEecccCcceeEEEEeeeC--CeEEEeeCCCCCCC
Q 015650 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQY 153 (403)
Q Consensus 78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~ 153 (403)
+++-..|.+.|..+...--|+.||+++ |+.|+||.+++..+ .+..+|. +|..++..+.|.. -+.+|++++.|
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~iLAScsYD--- 79 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELT-GHSGPVWKVAWAHPKFGTILASCSYD--- 79 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEec-CCCCCeeEEeecccccCcEeeEeecC---
Confidence 456678999999999988999999998 55599999987765 5567787 9999999999965 68999999999
Q ss_pred CCceEEEEECCCCceeEEEe---cCCceeEEEEecC--ceEEE---ecCeEEEEEcCCc---eeeeEeeccCCCceeEEE
Q 015650 154 PLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADL---KLLHQIETIANPKGLCAV 222 (403)
Q Consensus 154 ~~~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~--~~~~~---~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~ 222 (403)
|.|.||.-++++-.+... |...|++++|.|. |..|+ +||.|.+.+.+.. ...+....|.-.+..+++
T Consensus 80 --gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw 157 (299)
T KOG1332|consen 80 --GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW 157 (299)
T ss_pred --ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeee
Confidence 999999988885444333 8999999999996 44444 6999999988753 223344678888888999
Q ss_pred eeCCCe------------EEEEeeCCccCeEEEEEccC---CceeEEeecCCceEEEEEcCCC----CEEEEEeCCCcEE
Q 015650 223 SQGVGS------------LVLVCPGLQKGQVRVEHYAS---KRTKFIMAHDSRIACFALTQDG----QLLATSSTKGTLV 283 (403)
Q Consensus 223 ~~~~~~------------~~~~~~g~~d~~i~v~d~~~---~~~~~~~~~~~~i~~~~~sp~g----~~l~s~~~dg~~i 283 (403)
.|..-. .-+++ |..|..|+||+... ....++.+|.+.|+.++|.|.- .+||+++.||+ |
T Consensus 158 apa~~~g~~~~~~~~~~~krlvS-gGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-v 235 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVS-GGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-V 235 (299)
T ss_pred cCcCCCccccccCcccccceeec-cCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-E
Confidence 886211 22555 44899999999988 3445688999999999999953 58999999999 9
Q ss_pred EEEEcCCC--cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650 284 RIFNTLDG--TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (403)
Q Consensus 284 ~iwd~~~~--~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~ 335 (403)
.||-.... .-..++.. .....++.+.||..|..|++++.|+.|.+|.-+..
T Consensus 236 iIwt~~~e~e~wk~tll~-~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 236 IIWTKDEEYEPWKKTLLE-EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred EEEEecCccCcccccccc-cCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 99976521 11112211 13468999999999999999999999999986654
No 105
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.7e-23 Score=189.75 Aligned_cols=242 Identities=15% Similarity=0.181 Sum_probs=195.5
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (403)
Q Consensus 82 ~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i 160 (403)
-.|...-+.|+|.|+|.+|++++.++ |++|+........ ..+. .+...+.+++...+ .+++++.+ ++|.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-~ti~-~~g~~v~~ia~~s~--~f~~~s~~-----~tv~~ 80 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-ETID-ISGELVSSIACYSN--HFLTGSEQ-----NTVLR 80 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-chhh-ccCceeEEEeeccc--ceEEeecc-----ceEEE
Confidence 46888899999999999998887555 9999976542221 2232 25566666665444 67777777 99999
Q ss_pred EECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCC
Q 015650 161 WDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (403)
Q Consensus 161 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 236 (403)
|.+..++.-..+. +.-++++++++.+|.+++ .|-.|++.++.+......+++|..++..+.++|.++ ++|++ +
T Consensus 81 y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~--fLAvs-s 157 (933)
T KOG1274|consen 81 YKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN--FLAVS-S 157 (933)
T ss_pred eeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCC--EEEEE-e
Confidence 9999887765555 788999999999999998 366899999999988999999999999999999887 44442 3
Q ss_pred ccCeEEEEEccCCceeE-Ee-------ec-CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEE
Q 015650 237 QKGQVRVEHYASKRTKF-IM-------AH-DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY 307 (403)
Q Consensus 237 ~d~~i~v~d~~~~~~~~-~~-------~~-~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~ 307 (403)
-||.|++||+..+.+.. +. .. ...+..++|+|+|..|+..+.|+. |++|+..+.+....++...+...+.
T Consensus 158 ~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 158 CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccCCceeheeecccccccceE
Confidence 79999999999865422 11 11 345677899999888888888999 9999999999999998776666799
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 308 ~l~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
.++|+|.|+|||+++.||.|.|||+++.+
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t~~ 265 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVDTHE 265 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEecccch
Confidence 99999999999999999999999999854
No 106
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=5.9e-25 Score=181.44 Aligned_cols=244 Identities=14% Similarity=0.203 Sum_probs=197.2
Q ss_pred CCccccCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650 76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (403)
Q Consensus 76 ~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (403)
....++..|.+.|..|++.. +..+.+|+|++|+.|.++.. ..+++. ....+..+..+.....+++++
T Consensus 100 ~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~---p~~til--g~s~~~gIdh~~~~~~FaTcG------- 166 (433)
T KOG0268|consen 100 ECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP---PLHTIL--GKSVYLGIDHHRKNSVFATCG------- 166 (433)
T ss_pred hhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCC---cceeee--ccccccccccccccccccccC-------
Confidence 33477899999999999987 77777888888999998753 224553 566777777777777888888
Q ss_pred ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (403)
..|.|||.....+++.+. ....|.++.|+|-...++ +|+.|.+||++++.+++.+.. .-.-..++|+|... .
T Consensus 167 e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeaf--n 243 (433)
T KOG0268|consen 167 EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAF--N 243 (433)
T ss_pred ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCcccc--c
Confidence 469999999999999999 788899999999765444 599999999999988877643 23346789999433 2
Q ss_pred EEeeCCccCeEEEEEccC--CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEE
Q 015650 231 LVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308 (403)
Q Consensus 231 ~~~~g~~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 308 (403)
++ ++++|..++.||++. ..+....+|.+.|.++.|+|.|+-+++|+.|.+ |+||.+..+.....+... -...|.+
T Consensus 244 F~-~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-IRIf~~~~~~SRdiYhtk-RMq~V~~ 320 (433)
T KOG0268|consen 244 FV-AANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-IRIFPVNHGHSRDIYHTK-RMQHVFC 320 (433)
T ss_pred ee-eccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce-EEEeecCCCcchhhhhHh-hhheeeE
Confidence 33 357999999999998 556778899999999999999999999999999 999999877654444322 2357999
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650 309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (403)
Q Consensus 309 l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~ 338 (403)
+.||.|.+++++|++|+.|++|...-.+..
T Consensus 321 Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 321 VKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred EEEeccccEEEecCCCcceeeeecchhhhc
Confidence 999999999999999999999998766543
No 107
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1e-23 Score=188.31 Aligned_cols=283 Identities=13% Similarity=0.205 Sum_probs=221.8
Q ss_pred ccccCCCCCCeEEEEEcCC-----------CCEEEEEc-CCcEEEEEcCCC--eeEEEEec-c-----------------
Q 015650 78 ESTSSSPPPTLLHISFNQD-----------HGCFAAGT-DHGFRIYNCDPF--REIFRRDF-E----------------- 125 (403)
Q Consensus 78 ~~~~~~~~~~i~~i~~s~d-----------~~~l~~~~-~~~i~iw~~~~~--~~~~~~~~-~----------------- 125 (403)
.....-|...|+.+.--|- ...+++++ |++||+|+++.. ..++.+.+ .
T Consensus 362 ~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~ 441 (1080)
T KOG1408|consen 362 CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMH 441 (1080)
T ss_pred eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhh
Confidence 3556668888888876551 12355555 777999998641 11111100 0
Q ss_pred --------------cCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecC---c
Q 015650 126 --------------RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD---R 187 (403)
Q Consensus 126 --------------~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~---~ 187 (403)
-+...++.+++.+|++..|++|++. |+++||++..-+....++ |+..|.++.|+.. .
T Consensus 442 d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~-----GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~ 516 (1080)
T KOG1408|consen 442 DASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG-----GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTN 516 (1080)
T ss_pred hccCCcccccchhhcCcccceEEEEECCCcceecccCcc-----CceEEEEehhhhhhhheecccceeEEEeecCchhhh
Confidence 1345678999999999999999999 999999999988888888 9999999999863 4
Q ss_pred eEEE---ecCeEEEEEcCC-ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeEEee-----
Q 015650 188 IIVV---LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMA----- 256 (403)
Q Consensus 188 ~~~~---~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~~~----- 256 (403)
++++ -|.-|.+||... -.+++++.+|...|+.+.|.-.+-+.-+++.| .|..|. |+... .....+..
T Consensus 517 kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscG-ADksim-Fr~~qk~~~g~~f~r~t~t~ 594 (1080)
T KOG1408|consen 517 KLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCG-ADKSIM-FRVNQKASSGRLFPRHTQTL 594 (1080)
T ss_pred HhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEecc-Cchhhh-eehhccccCceecccccccc
Confidence 5666 378899999865 46778899999999999998887555555546 566554 34332 11222222
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecC-CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650 257 HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (403)
Q Consensus 257 ~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~ 335 (403)
.+..++.|+..|..+++++++.|.. |+|||+++++..+.|++. .|.+..-.+...|.|-||++.+.|.++.++|+.++
T Consensus 595 ~ktTlYDm~Vdp~~k~v~t~cQDrn-irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 595 SKTTLYDMAVDPTSKLVVTVCQDRN-IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred ccceEEEeeeCCCcceEEEEecccc-eEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence 2456899999999999999999999 999999999999999874 24577888999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 336 SGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
+. +++..+|.+.|+.+.|.+|-+.|++++.||.
T Consensus 674 Ec-----------------------------------vA~m~GHsE~VTG~kF~nDCkHlISvsgDgC 706 (1080)
T KOG1408|consen 674 EC-----------------------------------VAQMTGHSEAVTGVKFLNDCKHLISVSGDGC 706 (1080)
T ss_pred hh-----------------------------------hhhhcCcchheeeeeecccchhheeecCCce
Confidence 95 5667888999999999999999999999983
No 108
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.1e-25 Score=201.04 Aligned_cols=240 Identities=18% Similarity=0.254 Sum_probs=201.9
Q ss_pred cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEec
Q 015650 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRR 185 (403)
Q Consensus 107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~ 185 (403)
.+++|+.... . .|...+.++........+++|+.+ ..+-+|.+..-..+..+. |..+|.++.|+.
T Consensus 15 ~Lr~~~~~~~--~-------~hsaav~~lk~~~s~r~~~~Gg~~-----~k~~L~~i~kp~~i~S~~~hespIeSl~f~~ 80 (825)
T KOG0267|consen 15 KLRVWDTREF--V-------AHSAAVGCLKIRKSSRSLVTGGED-----EKVNLWAIGKPNAITSLTGHESPIESLTFDT 80 (825)
T ss_pred ccccccchhh--h-------hhhhhhceeeeeccceeeccCCCc-----eeeccccccCCchhheeeccCCcceeeecCc
Confidence 3778874321 1 355555555555667889999988 888899988877777777 999999999999
Q ss_pred CceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEcc-CCceeEEeecCCce
Q 015650 186 DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRI 261 (403)
Q Consensus 186 ~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~-~~~~~~~~~~~~~i 261 (403)
+..+++ .+|+|++||++..+.++++.+|...+..+.|+|.+. |. ..|+.|+.+++||.+ .++...+.+|...+
T Consensus 81 ~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~--~~-a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv 157 (825)
T KOG0267|consen 81 SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE--FF-ASGSTDTDLKIWDIRKKGCSHTYKSHTRVV 157 (825)
T ss_pred chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceE--Ee-ccccccccceehhhhccCceeeecCCccee
Confidence 988888 589999999999999999999999999999999876 44 458899999999999 47888888999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCC
Q 015650 262 ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARS 341 (403)
Q Consensus 262 ~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~ 341 (403)
.++.|+|+|++++.++.|.. ++|||+..|+.+.+|.. |.+.+.++.|+|..-++++|+.|++|++||+++.+.+.
T Consensus 158 ~~l~lsP~Gr~v~~g~ed~t-vki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~-- 232 (825)
T KOG0267|consen 158 DVLRLSPDGRWVASGGEDNT-VKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS-- 232 (825)
T ss_pred EEEeecCCCceeeccCCcce-eeeeccccccccccccc--ccccccccccCchhhhhccCCCCceeeeeccceeEEee--
Confidence 99999999999999999999 99999999999999996 77899999999999999999999999999999877321
Q ss_pred CCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccC
Q 015650 342 EPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD 401 (403)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~d 401 (403)
+....-..|.+++|.||+..+++|..+
T Consensus 233 ---------------------------------s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 233 ---------------------------------SGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ---------------------------------ccCCccCCceeeeecCCceeeecCchh
Confidence 112223467788999999988887653
No 109
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=3.5e-23 Score=166.60 Aligned_cols=282 Identities=13% Similarity=0.180 Sum_probs=206.0
Q ss_pred CccccCCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEEcCCCee------------EEEEecccCcceeEEEEeeeC-Ce
Q 015650 77 AESTSSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFRE------------IFRRDFERGGGIGVVEMLFRC-NI 141 (403)
Q Consensus 77 ~~~~~~~~~~~i~~i~~s~-d~~~l~~~~~~~-i~iw~~~~~~~------------~~~~~~~~~~~~~v~~~~~~~-~~ 141 (403)
...+...|.+.|+++.+.+ .|+++++|+.++ |.|||++.... ...+.-+.+|...|..+.|-| |.
T Consensus 35 d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 35 DKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred CcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence 3456678999999999977 689999998555 99999964331 111122246777888888766 44
Q ss_pred EEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCc---eEEE---ecCeEEEEEcCCceeeeEeeccCC
Q 015650 142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR---IIVV---LEQKIFVYNFADLKLLHQIETIAN 215 (403)
Q Consensus 142 ~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~---~d~~i~i~d~~~~~~~~~~~~~~~ 215 (403)
-.+.+++-| .++++||..+-+....|+.++.|..-+++|-. -+++ -+-+|++.|+..|..-+++.+|.+
T Consensus 115 GmFtssSFD-----htlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~ 189 (397)
T KOG4283|consen 115 GMFTSSSFD-----HTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD 189 (397)
T ss_pred ceeeccccc-----ceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence 566777778 99999999999999999999999999999842 2333 266899999999999999999999
Q ss_pred CceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeE--------------EeecCCceEEEEEcCCCCEEEEEeCC
Q 015650 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKF--------------IMAHDSRIACFALTQDGQLLATSSTK 279 (403)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~--------------~~~~~~~i~~~~~sp~g~~l~s~~~d 279 (403)
.|..+.|+|..+ ++.++|+.||.|++||++. +.... -..|.+.+..++|..+|.++++++.|
T Consensus 190 ~vlaV~Wsp~~e--~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd 267 (397)
T KOG4283|consen 190 GVLAVEWSPSSE--WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD 267 (397)
T ss_pred ceEEEEeccCce--eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc
Confidence 999999999876 4444577999999999986 23222 23577889999999999999999999
Q ss_pred CcEEEEEEcCCCcEEEEEec-CCCcc----cEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccc
Q 015650 280 GTLVRIFNTLDGTLLQEVRR-GADRA----EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS 354 (403)
Q Consensus 280 g~~i~iwd~~~~~~~~~~~~-~~~~~----~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 354 (403)
.. +++|+..+|+....-.+ ..|.. .+. +. +-+...++---.++.+.++.+-.+..
T Consensus 268 ~r-~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~----------------- 327 (397)
T KOG4283|consen 268 DR-IRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSF----------------- 327 (397)
T ss_pred cc-eEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceE-----------------
Confidence 99 99999988754221111 00111 111 22 33444444444567788887777763
Q ss_pred ccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 355 SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
+..+..|-..+.+.+|-|+=+.+.+|..||.
T Consensus 328 ------------------ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~n 358 (397)
T KOG4283|consen 328 ------------------VRRLSTHLKRINCAAYRPDFEQCFTGDMNGN 358 (397)
T ss_pred ------------------EEeeecccceeeEEeecCchhhhhccccCCc
Confidence 3345555567777888888787887777763
No 110
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.7e-24 Score=191.28 Aligned_cols=219 Identities=16% Similarity=0.203 Sum_probs=185.2
Q ss_pred CCeEEEeeCCCCCCCCCceEEEEECCCCc------eeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCc--ee
Q 015650 139 CNILALVGGGPDPQYPLNKVMIWDDHQSR------CIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL--KL 206 (403)
Q Consensus 139 ~~~~~~~s~~~d~~~~~~~i~iwd~~~~~------~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~--~~ 206 (403)
+++.+|+++++| |.|++|++.... .+..++ |...|.++....+++.++ .|-+|++|+...+ -+
T Consensus 35 ~~~ryLfTgGRD-----g~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c 109 (735)
T KOG0308|consen 35 PNGRYLFTGGRD-----GIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFC 109 (735)
T ss_pred CCCceEEecCCC-----ceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchh
Confidence 456689999999 999999976532 355666 889999999988886655 5899999998876 57
Q ss_pred eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-----------eEEe-ecCCceEEEEEcCCCCEEE
Q 015650 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----------KFIM-AHDSRIACFALTQDGQLLA 274 (403)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-----------~~~~-~~~~~i~~~~~sp~g~~l~ 274 (403)
+.++..|.+.|.++++....+ .++++ |+-|+.|.+||+..+.. ..+. ++...|++++.++.|..|+
T Consensus 110 ~stir~H~DYVkcla~~ak~~-~lvaS-gGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv 187 (735)
T KOG0308|consen 110 MSTIRTHKDYVKCLAYIAKNN-ELVAS-GGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV 187 (735)
T ss_pred HhhhhcccchheeeeecccCc-eeEEe-cCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEE
Confidence 888899999999998843333 24554 55999999999996421 1122 7888999999999999999
Q ss_pred EEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccc
Q 015650 275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS 354 (403)
Q Consensus 275 s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 354 (403)
+|+..+. |++||.++++.+..+++ |...|..+..++||..+++++.||+|++||+...+.
T Consensus 188 sGgtek~-lr~wDprt~~kimkLrG--HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC----------------- 247 (735)
T KOG0308|consen 188 SGGTEKD-LRLWDPRTCKKIMKLRG--HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC----------------- 247 (735)
T ss_pred ecCcccc-eEEeccccccceeeeec--cccceEEEEEcCCCCeEeecCCCceEEeeeccccce-----------------
Confidence 9999999 99999999999999996 788999999999999999999999999999998773
Q ss_pred ccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650 355 SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG 402 (403)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG 402 (403)
+..+..|++.|+.+..+|+-..+++|+.||
T Consensus 248 ------------------l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~ 277 (735)
T KOG0308|consen 248 ------------------LATYIVHKEGVWALQSSPSFTHVYSGGRDG 277 (735)
T ss_pred ------------------eeeEEeccCceEEEeeCCCcceEEecCCCC
Confidence 556888998999999999999999999998
No 111
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=3.6e-24 Score=173.44 Aligned_cols=208 Identities=14% Similarity=0.231 Sum_probs=175.0
Q ss_pred CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC------------C------ceeEEEe-cCCceeEEEEecCc
Q 015650 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ------------S------RCIGELS-FRSEVRSVKLRRDR 187 (403)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~------------~------~~~~~~~-~~~~i~~~~~~~~~ 187 (403)
.|...+.+.+|++||.++++|+.| ..|+|.|++. + -.++++- |..+|+++.|+|..
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD-----~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSAD-----ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCc-----ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 688999999999999999999999 9999999862 1 1345555 89999999999999
Q ss_pred eEEE---ecCeEEEEEcCCcee---eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE----Eeec
Q 015650 188 IIVV---LEQKIFVYNFADLKL---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF----IMAH 257 (403)
Q Consensus 188 ~~~~---~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~----~~~~ 257 (403)
.+++ -|++|++||+..... .+.+ ....++.++.|+|.|+.+++ |.+...+++||+.+-+... -..|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllv---gTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLV---GTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEE---ecCCCceeEEeccceeEeeecCccccc
Confidence 8888 399999999976432 2233 23567889999999985544 4477899999999855433 3578
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 258 ~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
.+.|+++.+++.|++.++++.||. |+|||--+++|+.++........|.+..|..+|++|++.+.|..+++|.+.++..
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGA-IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCc-EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 999999999999999999999999 9999999999999998764556899999999999999999999999999999998
Q ss_pred CCCCCCC
Q 015650 338 SARSEPR 344 (403)
Q Consensus 338 ~~~~~~~ 344 (403)
+..+.+.
T Consensus 340 l~~YtGA 346 (430)
T KOG0640|consen 340 LKEYTGA 346 (430)
T ss_pred EEEEecC
Confidence 7776643
No 112
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.2e-24 Score=168.08 Aligned_cols=235 Identities=16% Similarity=0.235 Sum_probs=187.7
Q ss_pred CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC---ceeEEEe-cCCceeEEEEec--CceEEE---ecCeEE
Q 015650 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELS-FRSEVRSVKLRR--DRIIVV---LEQKIF 197 (403)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~---~~~~~~~-~~~~i~~~~~~~--~~~~~~---~d~~i~ 197 (403)
.|...|......--+..|++++.| ++|+|+.++.+ +++.++. |.++|..++|.. -|.+|+ .||.|.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD-----~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSD-----GTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCC-----ccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 466666666666668889999999 99999998775 4566777 999999999976 688888 599999
Q ss_pred EEEcCCce--eeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC----ceeEEeecCCceEEEEEcCC--
Q 015650 198 VYNFADLK--LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSRIACFALTQD-- 269 (403)
Q Consensus 198 i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~----~~~~~~~~~~~i~~~~~sp~-- 269 (403)
||.-.+++ .......|...+..+++.|++-+++|+| ++.||.|.|.+.+.. ..+....|.-.|++++|.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lac-asSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLAC-ASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEE-eeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence 99987763 3455677889999999999999999988 458999999998874 23456789999999999985
Q ss_pred -C-----------CEEEEEeCCCcEEEEEEcCCCc--EEEEEecCCCcccEEEEEeCCCC----CEEEEEeCCCcEEEEE
Q 015650 270 -G-----------QLLATSSTKGTLVRIFNTLDGT--LLQEVRRGADRAEIYSLAFSSNA----QWLAVSSDKGTVHVFN 331 (403)
Q Consensus 270 -g-----------~~l~s~~~dg~~i~iwd~~~~~--~~~~~~~~~~~~~v~~l~~s~d~----~~l~s~~~dg~v~iwd 331 (403)
| +.|++|+.|.. |+||+..+++ ..+++.. |...|+.++|.|.- .+||+++.||+|.||.
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~-VkiW~~~~~~w~~e~~l~~--H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNL-VKIWKFDSDSWKLERTLEG--HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred CccccccCcccccceeeccCCccc-eeeeecCCcchhhhhhhhh--cchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 4 67999999999 9999988763 2334554 88999999999965 4799999999999999
Q ss_pred eecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650 332 LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG 402 (403)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG 402 (403)
.+... +.|...-++.....+..+.||..|+.|++++.|.
T Consensus 240 ~~~e~--------------------------------e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN 278 (299)
T KOG1332|consen 240 KDEEY--------------------------------EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN 278 (299)
T ss_pred ecCcc--------------------------------CcccccccccCCcceEEEEEeccccEEEEecCCc
Confidence 88332 1222222333345788899999999999998874
No 113
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=9.2e-22 Score=173.66 Aligned_cols=256 Identities=15% Similarity=0.150 Sum_probs=180.3
Q ss_pred CEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEE-eeCCCCCCCCCceEEEEECCCCceeEEEecC
Q 015650 98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRCIGELSFR 175 (403)
Q Consensus 98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~ 175 (403)
.++++++ ++.|++||+.+++.. ..+. .+ ..+..+.|++++..+ +++..+ +.|++||..+++.+..+...
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~--~~~~-~~-~~~~~l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~ 72 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVT--RTFP-VG-QRPRGITLSKDGKLLYVCASDS-----DTIQVIDLATGEVIGTLPSG 72 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceE--EEEE-CC-CCCCceEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEeccCC
Confidence 4677776 555999999877654 4444 22 335678889887654 566666 89999999999888777644
Q ss_pred CceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce
Q 015650 176 SEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT 251 (403)
Q Consensus 176 ~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~ 251 (403)
..+..++|+|++..++ .++.|++||+++.+.+..+... .....++++|+++.+++. ......+.+||.++...
T Consensus 73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~--~~~~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNT--SETTNMAHFIDTKTYEI 149 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEE--ecCCCeEEEEeCCCCeE
Confidence 4467889999987654 2789999999988877766532 335678999988754433 22334677889887655
Q ss_pred eEEeecCCceEEEEEcCCCCEEEEEe-CCCcEEEEEEcCCCcEEEEEecCC---C--cccEEEEEeCCCCCEEEEE-eCC
Q 015650 252 KFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGA---D--RAEIYSLAFSSNAQWLAVS-SDK 324 (403)
Q Consensus 252 ~~~~~~~~~i~~~~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~~~~~~~~~---~--~~~v~~l~~s~d~~~l~s~-~~d 324 (403)
.........+.+++|+|+|++|+.++ .++. |++||+++++.+..+.... + ......++|+|++++++++ +.+
T Consensus 150 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~ 228 (300)
T TIGR03866 150 VDNVLVDQRPRFAEFTADGKELWVSSEIGGT-VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA 228 (300)
T ss_pred EEEEEcCCCccEEEECCCCCEEEEEcCCCCE-EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence 43333344567899999999886554 5888 9999999998877665211 1 1124578999999986544 567
Q ss_pred CcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEc-cCC
Q 015650 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG-MDG 402 (403)
Q Consensus 325 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~-~dG 402 (403)
+.|.+||+++++. .. ...+...+..++|+|+|++|++++ .+|
T Consensus 229 ~~i~v~d~~~~~~-----------------------------------~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 271 (300)
T TIGR03866 229 NRVAVVDAKTYEV-----------------------------------LD-YLLVGQRVWQLAFTPDEKYLLTTNGVSN 271 (300)
T ss_pred CeEEEEECCCCcE-----------------------------------EE-EEEeCCCcceEEECCCCCEEEEEcCCCC
Confidence 7899999987662 11 112345688899999999999875 355
No 114
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.1e-22 Score=154.17 Aligned_cols=245 Identities=12% Similarity=0.137 Sum_probs=186.2
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEE---EEecccCcceeEEEEeeeC----CeEEEeeCCCC
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIF---RRDFERGGGIGVVEMLFRC----NILALVGGGPD 150 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~---~~~~~~~~~~~v~~~~~~~----~~~~~~s~~~d 150 (403)
+-...|.+.|.|.+|+|+|++|++|+ |+.|++...+...... ...+. -|...|..++|-. .+..+++++..
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeee-ecCCceeeeEEecCCCcCceEEEecCCC
Confidence 44567899999999999999999999 5558887664332211 12233 4778899999854 35566666542
Q ss_pred CCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeecc-------CCCcee
Q 015650 151 PQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI-------ANPKGL 219 (403)
Q Consensus 151 ~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~-------~~~~~~ 219 (403)
+..|++-|..+|+..+.+. |.+.|.++. +-++..++ .|.+|++||++-..++.++... ...+..
T Consensus 162 ----dc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaa 236 (350)
T KOG0641|consen 162 ----DCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAA 236 (350)
T ss_pred ----cceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEE
Confidence 2778888999999999998 888888764 33455555 4899999999988888776431 134566
Q ss_pred EEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC--cEEEE
Q 015650 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQE 296 (403)
Q Consensus 220 ~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~--~~~~~ 296 (403)
+++.|.++ ++++ |..|....+||++.++ ++.+..|...|.|+.|+|...||++++.|.. |++=|+... ..+..
T Consensus 237 v~vdpsgr--ll~s-g~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlqgdla~el~~ 312 (350)
T KOG0641|consen 237 VAVDPSGR--LLAS-GHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQGDLAHELPI 312 (350)
T ss_pred EEECCCcc--eeee-ccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeecccchhhcCce
Confidence 77777765 5554 7789999999999955 5778899999999999999999999999999 999998632 11122
Q ss_pred EecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (403)
Q Consensus 297 ~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~ 333 (403)
+....|...+..+.|+|..--+++.+.|.++.+|-++
T Consensus 313 ~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 313 MVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 2222377888899999999999999999999999764
No 115
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=6.2e-22 Score=170.35 Aligned_cols=268 Identities=11% Similarity=0.114 Sum_probs=199.3
Q ss_pred ccCCCCCCeEEEEEcC--CCCEEEEEcCCc---EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCe-EEEeeCCCCCCC
Q 015650 80 TSSSPPPTLLHISFNQ--DHGCFAAGTDHG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQY 153 (403)
Q Consensus 80 ~~~~~~~~i~~i~~s~--d~~~l~~~~~~~---i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~ 153 (403)
++......|.|++|++ .|.+|+.-+++. +.|||...+... .... ..+..+....|+|.. ..+++.+.
T Consensus 149 V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~--~~vk-~sne~v~~a~FHPtd~nliit~Gk---- 221 (626)
T KOG2106|consen 149 VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKL--GPVK-TSNEVVFLATFHPTDPNLIITCGK---- 221 (626)
T ss_pred eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhcc--Ccce-eccceEEEEEeccCCCcEEEEeCC----
Confidence 3445677899999987 356776665433 899998765544 2232 355678888898854 45566665
Q ss_pred CCceEEEEECCCCceeEEE---e--cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCC
Q 015650 154 PLNKVMIWDDHQSRCIGEL---S--FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV 226 (403)
Q Consensus 154 ~~~~i~iwd~~~~~~~~~~---~--~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (403)
+.+.+|+.+.+.+.+.. + .+..|.+++|.++|..+. ++|.|.||+..+.+..+....|.+.+.++++-.++
T Consensus 222 --~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G 299 (626)
T KOG2106|consen 222 --GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG 299 (626)
T ss_pred --ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc
Confidence 89999999988766543 3 346799999999999998 68999999998877777777999999999999887
Q ss_pred CeEEEEeeCCccCeEEEEEccCCce-----------------------------------------eEEeecCCceEEEE
Q 015650 227 GSLVLVCPGLQKGQVRVEHYASKRT-----------------------------------------KFIMAHDSRIACFA 265 (403)
Q Consensus 227 ~~~~~~~~g~~d~~i~v~d~~~~~~-----------------------------------------~~~~~~~~~i~~~~ 265 (403)
. +++ |..|..|..||-.-++. ....+|......++
T Consensus 300 t---llS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla 375 (626)
T KOG2106|consen 300 T---LLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLA 375 (626)
T ss_pred c---Eee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEE
Confidence 5 444 67999999998432111 12345666777788
Q ss_pred EcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCC
Q 015650 266 LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRS 345 (403)
Q Consensus 266 ~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 345 (403)
.+|+...+++++.|+. +++|+ ..+++-+.. -..++.++.|+|.| .+|.|...|...+.|.++..
T Consensus 376 ~hps~~q~~T~gqdk~-v~lW~--~~k~~wt~~---~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~--------- 439 (626)
T KOG2106|consen 376 THPSKNQLLTCGQDKH-VRLWN--DHKLEWTKI---IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD--------- 439 (626)
T ss_pred cCCChhheeeccCcce-EEEcc--CCceeEEEE---ecCceeEeeccCcc-eEEEeeccceEEEEecccce---------
Confidence 8888888888888888 88887 444444333 23577888888888 88888888888888887744
Q ss_pred CCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 346 TSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
..+++...+.+++++|+|+|.+||+|+.|+.
T Consensus 440 ---------------------------lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~ 470 (626)
T KOG2106|consen 440 ---------------------------LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNH 470 (626)
T ss_pred ---------------------------eEEEEecCCceEEEEEcCCCCEEEEecCCCe
Confidence 3334444678999999999999999999974
No 116
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=9.3e-24 Score=181.44 Aligned_cols=237 Identities=11% Similarity=0.211 Sum_probs=203.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEE
Q 015650 83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (403)
Q Consensus 83 ~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iw 161 (403)
...+-|.++.+.|||+.|++|++.. +.|||+......+...+. ...-.+.+++.++|...++++..| |.|.||
T Consensus 463 ~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelt-ssapaCyALa~spDakvcFsccsd-----GnI~vw 536 (705)
T KOG0639|consen 463 NRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDAKVCFSCCSD-----GNIAVW 536 (705)
T ss_pred CcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcC-CcchhhhhhhcCCccceeeeeccC-----CcEEEE
Confidence 3456788999999999999998654 999999877666555554 445577889999999988888888 999999
Q ss_pred ECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650 162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (403)
Q Consensus 162 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 237 (403)
|+.+...++.|+ |...+.||.+++||..+. .|++|+.||+++++.++... ....|..+..+|.++.+.+ |.+
T Consensus 537 DLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlav---GMe 612 (705)
T KOG0639|consen 537 DLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAV---GME 612 (705)
T ss_pred EcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceee---ecc
Confidence 999999999999 999999999999999888 59999999999988766543 3456778888888885444 558
Q ss_pred cCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCE
Q 015650 238 KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW 317 (403)
Q Consensus 238 d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~ 317 (403)
++.+.|..........+..|+.-|.++.|.+.|+++++.+.|.. +..|...-|..+...+ ..+.|.++.+|.|.++
T Consensus 613 ns~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl-LnawrtPyGasiFqsk---E~SsVlsCDIS~ddky 688 (705)
T KOG0639|consen 613 NSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISFDDKY 688 (705)
T ss_pred cCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhh-hhhccCccccceeecc---ccCcceeeeeccCceE
Confidence 88999988888888888999999999999999999999999999 9999999898887776 5689999999999999
Q ss_pred EEEEeCCCcEEEEEee
Q 015650 318 LAVSSDKGTVHVFNLK 333 (403)
Q Consensus 318 l~s~~~dg~v~iwd~~ 333 (403)
|++|+.|..-.+|.+.
T Consensus 689 IVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 689 IVTGSGDKKATVYEVI 704 (705)
T ss_pred EEecCCCcceEEEEEe
Confidence 9999999998888763
No 117
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=2e-21 Score=171.51 Aligned_cols=235 Identities=15% Similarity=0.166 Sum_probs=171.6
Q ss_pred CeEEEEEcCCCCEE-EEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEE-eeCCCCCCCCCceEEEEEC
Q 015650 87 TLLHISFNQDHGCF-AAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDD 163 (403)
Q Consensus 87 ~i~~i~~s~d~~~l-~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~i~iwd~ 163 (403)
.+.+++|+|+++.+ +++. ++.|++|+..+++.. ..+. .+ ..+..+.+++++..+ +++..+ +.|++||+
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~-~~-~~~~~~~~~~~g~~l~~~~~~~-----~~l~~~d~ 102 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI--GTLP-SG-PDPELFALHPNGKILYIANEDD-----NLVTVIDI 102 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--Eecc-CC-CCccEEEECCCCCEEEEEcCCC-----CeEEEEEC
Confidence 46789999999876 4555 455999999876654 3443 12 224567788887654 455556 89999999
Q ss_pred CCCceeEEEecCCceeEEEEecCceEEEe---c-CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccC
Q 015650 164 HQSRCIGELSFRSEVRSVKLRRDRIIVVL---E-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (403)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 239 (403)
.+++.+..+.....+.+++|+|++.+++. + ..+.+||.++++....+... .....+++++++..+++. +..++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~~~~~ 179 (300)
T TIGR03866 103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVS--SEIGG 179 (300)
T ss_pred CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEE--cCCCC
Confidence 99888887775566789999999988772 2 35778899888776555332 344678899988755443 34689
Q ss_pred eEEEEEccCCce-eEEeecC-------CceEEEEEcCCCCEEEEE-eCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEE
Q 015650 240 QVRVEHYASKRT-KFIMAHD-------SRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (403)
Q Consensus 240 ~i~v~d~~~~~~-~~~~~~~-------~~i~~~~~sp~g~~l~s~-~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 310 (403)
.|++||+++.+. ..+..+. .....++|+|++++++.+ +.++. |.+||+++++.+..+. +...+.+++
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~-i~v~d~~~~~~~~~~~---~~~~~~~~~ 255 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR-VAVVDAKTYEVLDYLL---VGQRVWQLA 255 (300)
T ss_pred EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEEE---eCCCcceEE
Confidence 999999988654 3332221 123568899999986554 44667 9999999988877665 335789999
Q ss_pred eCCCCCEEEEE-eCCCcEEEEEeecCCC
Q 015650 311 FSSNAQWLAVS-SDKGTVHVFNLKVNSG 337 (403)
Q Consensus 311 ~s~d~~~l~s~-~~dg~v~iwd~~~~~~ 337 (403)
|+|+|++|+++ +.+|.|++||+++++.
T Consensus 256 ~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 256 FTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 99999999886 4689999999999874
No 118
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.1e-22 Score=162.60 Aligned_cols=226 Identities=14% Similarity=0.229 Sum_probs=186.8
Q ss_pred CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCc---eEEE--ecCeEEEEE
Q 015650 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDR---IIVV--LEQKIFVYN 200 (403)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~---~~~~--~d~~i~i~d 200 (403)
.|...+++++. ++.++++|+.| -+|+|||+.+...+..+- |.+.|+++.|.+.. .++. .||.|.+|+
T Consensus 41 aH~~sitavAV--s~~~~aSGssD-----etI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSD-----ETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ccccceeEEEe--cceeEeccCCC-----CcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 68888888877 57799999999 999999999988888776 99999999999876 4454 599999999
Q ss_pred cCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCC
Q 015650 201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG 280 (403)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg 280 (403)
....+++..++.|.+.|+.++++|.++ +.+.. | .|+.+++|++-.++......-....+.+.|+|.|.+++.+..++
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsV-g-~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~ 190 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSGK-LALSV-G-GDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK 190 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCCc-eEEEE-c-CCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE
Confidence 999999999999999999999999986 23333 3 79999999998877665555455556699999999999988876
Q ss_pred cEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccc
Q 015650 281 TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIK 360 (403)
Q Consensus 281 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (403)
|-||.+.+......+. .+..+.++.|- ++..|++|++|+.|.+||.+....
T Consensus 191 --i~i~q~d~A~v~~~i~---~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~----------------------- 241 (362)
T KOG0294|consen 191 --IDIYQLDNASVFREIE---NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTP----------------------- 241 (362)
T ss_pred --EEEEecccHhHhhhhh---ccccceeeeec-CCceEEEecCCceEEEeccCCCcc-----------------------
Confidence 8999998888877776 33567778775 677899999999999999998664
Q ss_pred ccccceeeeeeeeEEEEEeCCCceEEEe--ccCCCEEEEEccCCC
Q 015650 361 GVLPKYFSSEWSVAQFRLVEGSPYIVAF--GHQKNTVVILGMDGR 403 (403)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f--s~d~~~l~~~~~dG~ 403 (403)
...+..|+.+|-.+.+ .|++.+|++++.||.
T Consensus 242 ------------~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~ 274 (362)
T KOG0294|consen 242 ------------LTEFLAHENRVKDIASYTNPEHEYLVTASSDGF 274 (362)
T ss_pred ------------ceeeecchhheeeeEEEecCCceEEEEeccCce
Confidence 3346777777777764 567899999999984
No 119
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=2.3e-22 Score=182.70 Aligned_cols=185 Identities=17% Similarity=0.183 Sum_probs=150.5
Q ss_pred CceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEe---eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC
Q 015650 176 SEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQI---ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK 249 (403)
Q Consensus 176 ~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~ 249 (403)
..+++++.++-|.+.+ +.|.|-+|+++.|-....+ ..|..++..+++..-++ .++++| .+|.+.+||...+
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~--~~vsa~-~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR--LLVSAG-ADGILKFWDFKKK 525 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc--eEEEcc-CcceEEEEecCCc
Confidence 4567777788777776 5889999999998777777 46777777777655444 445444 7999999999987
Q ss_pred ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEE
Q 015650 250 RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV 329 (403)
Q Consensus 250 ~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~i 329 (403)
....--.-...+.++..+.....++.+..|-. |+++|+.+.+.++.|.+ |.+.|++++|||||++|++++.|++|++
T Consensus 526 ~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~-I~vvD~~t~kvvR~f~g--h~nritd~~FS~DgrWlisasmD~tIr~ 602 (910)
T KOG1539|consen 526 VLKKSLRLGSSITGIVYHRVSDLLAIALDDFS-IRVVDVVTRKVVREFWG--HGNRITDMTFSPDGRWLISASMDSTIRT 602 (910)
T ss_pred ceeeeeccCCCcceeeeeehhhhhhhhcCcee-EEEEEchhhhhhHHhhc--cccceeeeEeCCCCcEEEEeecCCcEEE
Confidence 75544445667888999988889999999998 99999999999999997 7799999999999999999999999999
Q ss_pred EEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650 330 FNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG 402 (403)
Q Consensus 330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG 402 (403)
||+.++..+ - .-.-+.....+.|||.|.+||++-.|+
T Consensus 603 wDlpt~~lI-----------------------------------D-~~~vd~~~~sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 603 WDLPTGTLI-----------------------------------D-GLLVDSPCTSLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred EeccCccee-----------------------------------e-eEecCCcceeeEECCCCCEEEEEEecC
Confidence 999999841 1 112245677899999999999998774
No 120
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=9.9e-23 Score=173.34 Aligned_cols=235 Identities=20% Similarity=0.302 Sum_probs=188.7
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650 82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (403)
Q Consensus 82 ~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i 160 (403)
..|...|.+++.++||+|||+|. |..|.||+.++.+.+ +.+. +|...|.+++|.....-+++++.| ..|++
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv--~~~~-ghr~~V~~L~fr~gt~~lys~s~D-----rsvkv 270 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHV--KVFK-GHRGAVSSLAFRKGTSELYSASAD-----RSVKV 270 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchh--hccc-ccccceeeeeeecCccceeeeecC-----CceEE
Confidence 38999999999999999999998 555999999988776 5676 899999999998888888888888 99999
Q ss_pred EECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCC
Q 015650 161 WDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (403)
Q Consensus 161 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 236 (403)
|++.....+.++- |+..|.++....-.+.+. .|.++++|++.. +....+.++.+.+.+++|-.+.. +++ |+
T Consensus 271 w~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~H---fvs-GS 345 (479)
T KOG0299|consen 271 WSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEH---FVS-GS 345 (479)
T ss_pred EehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccc---eee-cc
Confidence 9999988888777 999999999887777766 499999999954 33345667788888898876653 443 77
Q ss_pred ccCeEEEEEccCCceeEEe--ec-----------CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC----cEEEEEec
Q 015650 237 QKGQVRVEHYASKRTKFIM--AH-----------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----TLLQEVRR 299 (403)
Q Consensus 237 ~d~~i~v~d~~~~~~~~~~--~~-----------~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~----~~~~~~~~ 299 (403)
.+|.|.+|++..++..... +| ..+|++++..|...++|+|+.+|. |++|-+..+ +++..+.
T Consensus 346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g~r~i~~l~~ls- 423 (479)
T KOG0299|consen 346 DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-VRLWKIEDGLRAINLLYSLS- 423 (479)
T ss_pred CCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-eEEEEecCCccccceeeecc-
Confidence 9999999999885543221 22 238999999999999999999999 999998877 4444554
Q ss_pred CCCcccEEEEEeCCCCCEEEEE-eCCCcEEEEEee
Q 015650 300 GADRAEIYSLAFSSNAQWLAVS-SDKGTVHVFNLK 333 (403)
Q Consensus 300 ~~~~~~v~~l~~s~d~~~l~s~-~~dg~v~iwd~~ 333 (403)
-.+.|++|+|+++|+.|++| +....+--|-..
T Consensus 424 --~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 424 --LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred --cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence 45789999999999966555 455555555443
No 121
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.4e-22 Score=177.78 Aligned_cols=291 Identities=16% Similarity=0.196 Sum_probs=218.0
Q ss_pred CCccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCe--EEEee-CCCC-
Q 015650 76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI--LALVG-GGPD- 150 (403)
Q Consensus 76 ~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~s-~~~d- 150 (403)
.....+.+|++.|.+|...|.|.+|++|+++| |+||.+.++.++....+. ..|.+++|+|.. ..|+. .+..
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d----~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD----SEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec----ceeEEEEecCCCCceeEEEEecCce
Confidence 34467899999999999999999999999666 999999999988555543 578888887742 12221 1111
Q ss_pred ----C---------------------CCCCceEEEEECCCC---c--eeEEEecCCceeEEEEecCceEEEe------cC
Q 015650 151 ----P---------------------QYPLNKVMIWDDHQS---R--CIGELSFRSEVRSVKLRRDRIIVVL------EQ 194 (403)
Q Consensus 151 ----~---------------------~~~~~~i~iwd~~~~---~--~~~~~~~~~~i~~~~~~~~~~~~~~------d~ 194 (403)
+ .++++.+..|.-... + ....+.|...|..+.|+..|.++++ ..
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 0 122355667754311 1 1234558999999999999999982 45
Q ss_pred eEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEE
Q 015650 195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLL 273 (403)
Q Consensus 195 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l 273 (403)
.|.|+++...+...-|.-..+.+..+.|+|....+++++ ...|++||+..+. ++.+......|..++++|.|..|
T Consensus 547 ~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT----q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT----QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL 622 (733)
T ss_pred eEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe----ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence 799999987766666666677888999999988777664 5789999998744 34455566789999999999999
Q ss_pred EEEeCCCcEEEEEEcCCC-cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCc
Q 015650 274 ATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP 352 (403)
Q Consensus 274 ~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (403)
+.|+.|+. +..||+.-. ++.++++. |...+++++|++.-.+|++|+.||++.||.-.-...+....
T Consensus 623 i~gs~d~k-~~WfDldlsskPyk~lr~--H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnp---------- 689 (733)
T KOG0650|consen 623 ILGSYDKK-MCWFDLDLSSKPYKTLRL--HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNP---------- 689 (733)
T ss_pred EEecCCCe-eEEEEcccCcchhHHhhh--hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCC----------
Confidence 99999999 999999754 55566664 78899999999999999999999999999765444211110
Q ss_pred ccccccccccccceeeeeeeeEEEEEeCCC----ceEEEeccCCCEEEEEccCCC
Q 015650 353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEGS----PYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~fs~d~~~l~~~~~dG~ 403 (403)
-++| +..+++|... |..+.|+|..-+|+++++||+
T Consensus 690 --------liVP--------lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~t 728 (733)
T KOG0650|consen 690 --------LIVP--------LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGT 728 (733)
T ss_pred --------ceEe--------eeeccCceeecccceEeecccCCCceEEecCCCce
Confidence 0222 4456666644 777899999999999999985
No 122
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=3.2e-22 Score=163.09 Aligned_cols=241 Identities=13% Similarity=0.162 Sum_probs=173.2
Q ss_pred CeEEEEEcCCCCEEEEEc-CCcEEEEEcCCC------------eeEEEEecccCcceeEEEEee-------eCCeEEEee
Q 015650 87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPF------------REIFRRDFERGGGIGVVEMLF-------RCNILALVG 146 (403)
Q Consensus 87 ~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~------------~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~~s 146 (403)
-...+.|+|||..|.+-+ |+++++|++... +......+. ....|...+| .|+..++++
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~--eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ--EGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec--cCCEEEEEEeeeccccCCCccceeee
Confidence 445679999999988877 777999998311 111112222 3445555555 356677888
Q ss_pred CCCCCCCCCceEEEEECCCCceeEEEe---cCCc---eeEEEEecCceEEE--ecCeEEEEEc-CCceeeeEe-------
Q 015650 147 GGPDPQYPLNKVMIWDDHQSRCIGELS---FRSE---VRSVKLRRDRIIVV--LEQKIFVYNF-ADLKLLHQI------- 210 (403)
Q Consensus 147 ~~~d~~~~~~~i~iwd~~~~~~~~~~~---~~~~---i~~~~~~~~~~~~~--~d~~i~i~d~-~~~~~~~~~------- 210 (403)
.+++ .-|++||.-+|+....+. |... ..+++|+|||..++ ....|+++|+ +.|+....+
T Consensus 129 ssr~-----~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k 203 (406)
T KOG2919|consen 129 SSRD-----QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGK 203 (406)
T ss_pred cccc-----CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccc
Confidence 8888 899999999999888776 4443 46899999998887 5789999999 555432221
Q ss_pred eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 015650 211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (403)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~ 289 (403)
.+..+-+.+++++|.....+ ++ |+....+-||.-.. +.+..+.+|.+.|+.++|.++|+.|++|......|..||++
T Consensus 204 ~gq~giisc~a~sP~~~~~~-a~-gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPMDSKTL-AV-GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred ccccceeeeeeccCCCCcce-ee-ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 12345567888999776543 43 45667777776665 55667789999999999999999999998744339999998
Q ss_pred C-CcEEEEEecCCCcccEEE--EEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650 290 D-GTLLQEVRRGADRAEIYS--LAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 290 ~-~~~~~~~~~~~~~~~v~~--l~~s~d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
. +.++..+.++.. ..-.. ....|++++|++|+.||.|++||+++..+
T Consensus 282 ~~~~pv~~L~rhv~-~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 282 YSRDPVYALERHVG-DTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred hccchhhhhhhhcc-CccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 5 455666665322 12233 44568999999999999999999999553
No 123
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.1e-22 Score=169.38 Aligned_cols=265 Identities=12% Similarity=0.130 Sum_probs=198.2
Q ss_pred CCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEE-ecCCceeEEE
Q 015650 105 DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL-SFRSEVRSVK 182 (403)
Q Consensus 105 ~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~-~~~~~i~~~~ 182 (403)
|.. +.+||+.++... .+++++......++..- +..+++++... ...|.+|.+......... .-+++|.+++
T Consensus 16 d~~~~~~~dl~TGt~~--~~ykg~~~a~~~sl~~l-~~~yllsaq~~----rp~l~vw~i~k~~~~~q~~v~Pg~v~al~ 88 (476)
T KOG0646|consen 16 DPINCIVWDLRTGTSL--LQYKGSYLAQAASLTAL-NNEYLLSAQLK----RPLLHVWEILKKDQVVQYIVLPGPVHALA 88 (476)
T ss_pred CCcceeEEecCCCcee--EEecCcccccchhhhhh-chhheeeeccc----CccccccccCchhhhhhhcccccceeeee
Confidence 444 999999988776 34441212111122111 11233333321 158999998776555533 3788999999
Q ss_pred EecCceEEEe---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC----------C
Q 015650 183 LRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----------K 249 (403)
Q Consensus 183 ~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~----------~ 249 (403)
-+|+|.+++. .+.|++|.+.+|+++..+..|-..++++.|+-|+.. +.+ |+.||.|.+|.+.. .
T Consensus 89 s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~--iiT-gskDg~V~vW~l~~lv~a~~~~~~~ 165 (476)
T KOG0646|consen 89 SSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSH--IIT-GSKDGAVLVWLLTDLVSADNDHSVK 165 (476)
T ss_pred cCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcE--EEe-cCCCccEEEEEEEeecccccCCCcc
Confidence 9999999993 689999999999999999999999999999988874 444 55999999998753 3
Q ss_pred ceeEEeecCCceEEEEEcCC--CCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcE
Q 015650 250 RTKFIMAHDSRIACFALTQD--GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV 327 (403)
Q Consensus 250 ~~~~~~~~~~~i~~~~~sp~--g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v 327 (403)
....+..|.-+|+++...+. ..+|++++.|.+ +++||+..+.++.++. .+..+.+++.+|-++.+.+|+.+|.|
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t-~k~wdlS~g~LLlti~---fp~si~av~lDpae~~~yiGt~~G~I 241 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRT-IKLWDLSLGVLLLTIT---FPSSIKAVALDPAERVVYIGTEEGKI 241 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceEEEecCCce-EEEEEeccceeeEEEe---cCCcceeEEEcccccEEEecCCcceE
Confidence 45667889999999988765 368999999999 9999999999999888 56899999999999999999999999
Q ss_pred EEEEeecCCCCCCCCCCCCCCCCCccccccccccccc-ceeeeeeeeEEEEEeCC--CceEEEeccCCCEEEEEccCCC
Q 015650 328 HVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP-KYFSSEWSVAQFRLVEG--SPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
.+.++..-.....- +.. .+-...-.+.-+.+|++ .|++++.+-||..|++|++||.
T Consensus 242 ~~~~~~~~~~~~~~--------------------v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~ 300 (476)
T KOG0646|consen 242 FQNLLFKLSGQSAG--------------------VNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK 300 (476)
T ss_pred EeeehhcCCccccc--------------------ccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC
Confidence 99998765531110 000 00111112344667776 9999999999999999999984
No 124
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.5e-21 Score=171.36 Aligned_cols=277 Identities=13% Similarity=0.191 Sum_probs=209.9
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (403)
+...-.+..|.+|+|+.+.+.||.+..+ .|.||++... ..+...+.++....|-+++|.+.+..+ +.+.+ |.
T Consensus 19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W~e~~RLF-S~g~s-----g~ 91 (691)
T KOG2048|consen 19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAWAEGGRLF-SSGLS-----GS 91 (691)
T ss_pred EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEEccCCeEE-eecCC-----ce
Confidence 4445567889999999999999999744 5999999763 334456665677889999999655544 44445 99
Q ss_pred EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeE--eeccCCCceeEEEeeCCCeEEE
Q 015650 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQ--IETIANPKGLCAVSQGVGSLVL 231 (403)
Q Consensus 158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 231 (403)
|.-||+.+++.+..+. ..+.|++++.+|.+..++ -||.++.++...++.... +......+-++.|++++.. +
T Consensus 92 i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~--i 169 (691)
T KOG2048|consen 92 ITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK--I 169 (691)
T ss_pred EEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE--E
Confidence 9999999999999998 889999999999887777 478777777776655433 3333455666666666543 3
Q ss_pred EeeCCccCeEEEEEccCCceeE-----Eee----cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCC
Q 015650 232 VCPGLQKGQVRVEHYASKRTKF-----IMA----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD 302 (403)
Q Consensus 232 ~~~g~~d~~i~v~d~~~~~~~~-----~~~----~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~ 302 (403)
+ +|+.||.|++||...+.... +.. ...-|.++.|-.++ .|++|...|+ |++||...+.+++.+.. |
T Consensus 170 ~-~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~-V~FWd~~~gTLiqS~~~--h 244 (691)
T KOG2048|consen 170 A-GGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT-VTFWDSIFGTLIQSHSC--H 244 (691)
T ss_pred E-ecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce-EEEEcccCcchhhhhhh--h
Confidence 4 37799999999998855433 111 23347788887666 5889999999 99999999999999986 7
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeee-EEEEEeCC
Q 015650 303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSV-AQFRLVEG 381 (403)
Q Consensus 303 ~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 381 (403)
.+.|.+|+..+++.++++++.|+.|.-|...+.+. +|.. .+..+|..
T Consensus 245 ~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~--------------------------------~wv~~~~r~~h~h 292 (691)
T KOG2048|consen 245 DADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS--------------------------------EWVINSRRDLHAH 292 (691)
T ss_pred hcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc--------------------------------ceeeeccccCCcc
Confidence 78999999999999999999999999999988873 1322 23455566
Q ss_pred CceEEEeccCCCEEEEEccCCC
Q 015650 382 SPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 382 ~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
.+.+++..++ .|++|+.|++
T Consensus 293 dvrs~av~~~--~l~sgG~d~~ 312 (691)
T KOG2048|consen 293 DVRSMAVIEN--ALISGGRDFT 312 (691)
T ss_pred cceeeeeecc--eEEecceeeE
Confidence 6777776655 7888877753
No 125
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=3.4e-22 Score=169.97 Aligned_cols=244 Identities=14% Similarity=0.139 Sum_probs=180.4
Q ss_pred CcceeEEEEeeeCCe-EEEeeCCCCCCCCCceEEEEECCCCc----------eeEEEe-cCCceeEEEEecC--ceEEE-
Q 015650 127 GGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQSR----------CIGELS-FRSEVRSVKLRRD--RIIVV- 191 (403)
Q Consensus 127 ~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~i~iwd~~~~~----------~~~~~~-~~~~i~~~~~~~~--~~~~~- 191 (403)
.|...|..+.+.|+. .++++.... +.|+|||..+-. +-..+. |...-.+++|++. +.++.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~-----~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSS-----GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCC-----CCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence 377888888887764 455555655 899999975431 111444 7777788999985 44554
Q ss_pred -ecCeEEEEEcCCce-------eeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC---CceeEEeecCCc
Q 015650 192 -LEQKIFVYNFADLK-------LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---KRTKFIMAHDSR 260 (403)
Q Consensus 192 -~d~~i~i~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~---~~~~~~~~~~~~ 260 (403)
.|++|.+||+.... ....+.+|...+..++|++....++..+ | .|+.+.|||+|. +......+|.+.
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv-~-dd~~L~iwD~R~~~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV-G-DDGKLMIWDTRSNTSKPSHSVKAHSAE 274 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee-c-CCCeEEEEEcCCCCCCCcccccccCCc
Confidence 58999999997532 3456788999999999999888776554 4 899999999995 334567899999
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCC-cEEEEEecCCCcccEEEEEeCCCCC-EEEEEeCCCcEEEEEeecCCC
Q 015650 261 IACFALTQ-DGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 261 i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~~~dg~v~iwd~~~~~~ 337 (403)
|.|++|+| ++.+||+|+.|++ |++||+++. +++.++.. |...|..+.|+|+.. .||+++.|+.+.|||+..-..
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL~~~lh~~e~--H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKT-VALWDLRNLNKPLHTFEG--HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE 351 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCc-EEEeechhcccCceeccC--CCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence 99999999 5667899999999 999999975 45667775 789999999999765 788899999999999987654
Q ss_pred CCCCC-CCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCC-CEEEEEccCC
Q 015650 338 SARSE-PRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK-NTVVILGMDG 402 (403)
Q Consensus 338 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~-~~l~~~~~dG 402 (403)
+...+ ... -.|+. +-...+|...|..+.|.|.. ..|+++++|+
T Consensus 352 eq~~eda~d----------------gppEl------lF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN 396 (422)
T KOG0264|consen 352 EQSPEDAED----------------GPPEL------LFIHGGHTAKVSDFSWNPNEPWTIASVAEDN 396 (422)
T ss_pred ccChhhhcc----------------CCcce------eEEecCcccccccccCCCCCCeEEEEecCCc
Confidence 33211 100 01111 11135677789999999976 5566777775
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=173.23 Aligned_cols=235 Identities=12% Similarity=0.146 Sum_probs=192.7
Q ss_pred CEEEEEc-CC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-c
Q 015650 98 GCFAAGT-DH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-F 174 (403)
Q Consensus 98 ~~l~~~~-~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~ 174 (403)
.+++++. .+ .+.+|.+....... ..+ --...+.++.-++.+.+++.+... |.|++|.+.+|.++..+. |
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~-q~~--v~Pg~v~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v~~aH 122 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVV-QYI--VLPGPVHALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNVLSAH 122 (476)
T ss_pred hheeeecccCccccccccCchhhhh-hhc--ccccceeeeecCCCceEEEeeccc-----CcEEEEEeccccHHHHHHhh
Confidence 5677776 33 39999987554443 222 245678999999999999999776 999999999999998888 9
Q ss_pred CCceeEEEEecCceEEEe---cCeEEEEEcCC---------ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEE
Q 015650 175 RSEVRSVKLRRDRIIVVL---EQKIFVYNFAD---------LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR 242 (403)
Q Consensus 175 ~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 242 (403)
-..|+++.|+.|+.++++ ||.|.+|++.+ -++++.+..|.-+|..+.+.+.+-.-.+.+++ .|.+++
T Consensus 123 YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-~D~t~k 201 (476)
T KOG0646|consen 123 YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS-EDRTIK 201 (476)
T ss_pred ccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec-CCceEE
Confidence 999999999999999983 99999998753 35677888899999999888876555555544 999999
Q ss_pred EEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC----------------CcEEEEEecCCCcccE
Q 015650 243 VEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD----------------GTLLQEVRRGADRAEI 306 (403)
Q Consensus 243 v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~----------------~~~~~~~~~~~~~~~v 306 (403)
+||+..+.+.........+.+++.+|.++.++.|+.+|. |.+.++.. +..+..+.+|.....|
T Consensus 202 ~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~I 280 (476)
T KOG0646|consen 202 LWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAI 280 (476)
T ss_pred EEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce-EEeeehhcCCcccccccccccccccceeeeeccccCCcce
Confidence 999999887776777888999999999999999999999 88887643 2344556664433599
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCC
Q 015650 307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE 342 (403)
Q Consensus 307 ~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 342 (403)
+|++.+-||..|++|+.||.|+|||+.+.+.++++.
T Consensus 281 TcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 281 TCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred eEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 999999999999999999999999999998877765
No 127
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=4.1e-22 Score=177.62 Aligned_cols=234 Identities=17% Similarity=0.261 Sum_probs=197.1
Q ss_pred cccCCCCCCeEE-EEEcC-CCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650 79 STSSSPPPTLLH-ISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (403)
Q Consensus 79 ~~~~~~~~~i~~-i~~s~-d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (403)
..+.+|.+-|.+ ++|-+ ++-.|++|+ |..|.+|........ ..+. +|...|.++....++. +++++-|
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~--~~Lk-gH~snVC~ls~~~~~~-~iSgSWD----- 121 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL--YTLK-GHKSNVCSLSIGEDGT-LISGSWD----- 121 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCch--hhhh-ccccceeeeecCCcCc-eEecccc-----
Confidence 557778888877 88864 444566666 666999998877766 6676 8999999999877777 8999999
Q ss_pred ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEE
Q 015650 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (403)
.++++|. .+++...++ |...|+++..-|++.++. .|.+|++|. .++.+++|.+|.+.++.+++-++.. ++.
T Consensus 122 ~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~--flS 195 (745)
T KOG0301|consen 122 STAKVWR--IGELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSH--FLS 195 (745)
T ss_pred cceEEec--chhhhcccCCcchheeeeeecCCCcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCC--eEe
Confidence 9999996 456666677 999999999999998777 699999998 4788999999999999999988865 444
Q ss_pred eeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcc-cEEEEEe
Q 015650 233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA-EIYSLAF 311 (403)
Q Consensus 233 ~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~-~v~~l~~ 311 (403)
+ ++||.|++|++....+....+|..-++++....++..++++++|++ ++||+.. ++.+.+. ++. .|+++.+
T Consensus 196 c--sNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt-lriW~~~--e~~q~I~---lPttsiWsa~~ 267 (745)
T KOG0301|consen 196 C--SNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT-LRIWKKD--ECVQVIT---LPTTSIWSAKV 267 (745)
T ss_pred e--cCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCce-EEEeecC--ceEEEEe---cCccceEEEEE
Confidence 4 4899999999999999999999999999998888889999999999 9999864 8888887 444 8999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 312 SSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 312 s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
-++|. |++|+.||.|+||-.+...
T Consensus 268 L~NgD-Ivvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 268 LLNGD-IVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred eeCCC-EEEeccCceEEEEEecccc
Confidence 88877 5678889999999987554
No 128
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.2e-22 Score=161.89 Aligned_cols=238 Identities=15% Similarity=0.213 Sum_probs=188.0
Q ss_pred eEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC
Q 015650 88 LLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (403)
Q Consensus 88 i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~ 166 (403)
-.|+.|++.|.+||+|+.+| |.|||+.+.... +.+. +|..+|.+++|++++..|++++.| ..|.+||+..|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia--r~ls-aH~~pi~sl~WS~dgr~LltsS~D-----~si~lwDl~~g 97 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA--RMLS-AHVRPITSLCWSRDGRKLLTSSRD-----WSIKLWDLLKG 97 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh--hhhh-ccccceeEEEecCCCCEeeeecCC-----ceeEEEeccCC
Confidence 68999999999999999666 999999887743 5565 899999999999999999999999 99999999999
Q ss_pred ceeEEEecCCceeEEEEecCc-----------------------------------------------eEEE---ecCeE
Q 015650 167 RCIGELSFRSEVRSVKLRRDR-----------------------------------------------IIVV---LEQKI 196 (403)
Q Consensus 167 ~~~~~~~~~~~i~~~~~~~~~-----------------------------------------------~~~~---~d~~i 196 (403)
.+++.+.+..+|..+.|+|.. .++. +.|.+
T Consensus 98 s~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkl 177 (405)
T KOG1273|consen 98 SPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKL 177 (405)
T ss_pred CceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceE
Confidence 999988888888877777632 2222 24567
Q ss_pred EEEEcCCceeeeEeeccC-CCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-------CceeEEe-----ecCCceEE
Q 015650 197 FVYNFADLKLLHQIETIA-NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-------KRTKFIM-----AHDSRIAC 263 (403)
Q Consensus 197 ~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-------~~~~~~~-----~~~~~i~~ 263 (403)
.+||..+.+++..++... ..+..+.++..++.+++- +.|..|+.|+++. +.+.... -.+..-.+
T Consensus 178 lv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiN---tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 178 LVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIIN---TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred EEEecchheeeeeeeechheeeeEEEEeccCcEEEEe---cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 788888888887776555 667788898888866554 3899999999874 1111110 11233467
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650 264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (403)
Q Consensus 264 ~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~ 338 (403)
++|+.+|.|++.++.....++||....|.+++.+.+. .......+.|+|-...+++- ..|.|+||.....++-
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~-kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~enw 327 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT-KGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVENW 327 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCcceeeeecCC-chhheeecccccceeeeeec-cCCceEEEEeecccch
Confidence 8999999999988865545999999999999999864 33578899999988888877 7899999998877653
No 129
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1e-21 Score=158.75 Aligned_cols=237 Identities=16% Similarity=0.151 Sum_probs=179.4
Q ss_pred CcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEEEECCC-CceeEEE--ecCCceeEEEEecCceEEE---ecCeEEEE
Q 015650 127 GGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGEL--SFRSEVRSVKLRRDRIIVV---LEQKIFVY 199 (403)
Q Consensus 127 ~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~-~~~~~~~--~~~~~i~~~~~~~~~~~~~---~d~~i~i~ 199 (403)
.....|.+++|+| ...+++.++-| ++||+|++.. |..+-.- .|.++|.+++|+.||..++ .|+.+++|
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD-----~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWD-----GTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred CcccchheeEeccccCceEEecccC-----CceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 4667899999999 45566688888 9999999987 4444332 3899999999999998777 59999999
Q ss_pred EcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCC
Q 015650 200 NFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK 279 (403)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d 279 (403)
||.++ .+..+..|..++..+.|-+......+++ |+-|.+|+.||.+.........-...++++.. -..+++.+..+
T Consensus 100 DL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~T-GSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv--~~pm~vVata~ 175 (347)
T KOG0647|consen 100 DLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVT-GSWDKTLKFWDTRSSNPVATLQLPERVYAADV--LYPMAVVATAE 175 (347)
T ss_pred EccCC-CeeeeeecccceeEEEEecCCCcceeEe-cccccceeecccCCCCeeeeeeccceeeehhc--cCceeEEEecC
Confidence 99998 4567778999999999988777556665 88999999999998665444445566776654 44577888888
Q ss_pred CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccc
Q 015650 280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFI 359 (403)
Q Consensus 280 g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (403)
.. |.+|+++++..........-.-.+++|+..+|.+..+.|+-+|.+.|..++.+.+...+.
T Consensus 176 r~-i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFt----------------- 237 (347)
T KOG0647|consen 176 RH-IAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFT----------------- 237 (347)
T ss_pred Cc-EEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCcee-----------------
Confidence 88 999999876543322211133468899999999988999999999999999875311110
Q ss_pred cccccceeeeeeeeEEEEE---eCC---CceEEEeccCCCEEEEEccCCC
Q 015650 360 KGVLPKYFSSEWSVAQFRL---VEG---SPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
+...+- -.+ .|+.++|+|.-..|+++|.||+
T Consensus 238 -------------FkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt 274 (347)
T KOG0647|consen 238 -------------FKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT 274 (347)
T ss_pred -------------EEEeccCCCCCCceEEecceEeecccceEEEecCCce
Confidence 111110 011 4778999999999999999996
No 130
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.3e-21 Score=158.47 Aligned_cols=247 Identities=17% Similarity=0.261 Sum_probs=177.0
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCee--EEEEecccCcceeEEEEeeeC--CeEEEeeCCCCCCC
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE--IFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQY 153 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~ 153 (403)
.+-.+|.+-|+++.|.+.|+.+|+++ |..|+|||.+.... .+....+ .|...|..+.|.+ =|..+++++.|
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS~D--- 82 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCSYD--- 82 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccceEEEEecC---
Confidence 45678999999999999999999998 55699999754333 3334444 6888899988854 47899999999
Q ss_pred CCceEEEEECCCC---------ceeEEEe-cCCceeEEEEecC--ceEEE---ecCeEEEEEcCCc------eeeeEee-
Q 015650 154 PLNKVMIWDDHQS---------RCIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADL------KLLHQIE- 211 (403)
Q Consensus 154 ~~~~i~iwd~~~~---------~~~~~~~-~~~~i~~~~~~~~--~~~~~---~d~~i~i~d~~~~------~~~~~~~- 211 (403)
+++.||.-... ....++. ....|+++.|.|. |..++ .||.++||+..+. .+..++.
T Consensus 83 --rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 83 --RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred --CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 99999974211 1223344 6789999999995 55555 5999999986542 2333333
Q ss_pred ------ccCCCceeEEEeeCCC-eEEEEeeCCcc-----CeEEEEEccCC-----ceeEEeecCCceEEEEEcCC----C
Q 015650 212 ------TIANPKGLCAVSQGVG-SLVLVCPGLQK-----GQVRVEHYASK-----RTKFIMAHDSRIACFALTQD----G 270 (403)
Q Consensus 212 ------~~~~~~~~~~~~~~~~-~~~~~~~g~~d-----~~i~v~d~~~~-----~~~~~~~~~~~i~~~~~sp~----g 270 (403)
.+..+..++.|++..- ..+++. |+.+ +.++||..... ++..+..|..+|++|+|.|+ -
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAv-gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y 239 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAV-GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSY 239 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEE-EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCce
Confidence 2233445566665321 123444 3222 47888887652 23456789999999999994 3
Q ss_pred CEEEEEeCCCcEEEEEEcCCC--------------------cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEE
Q 015650 271 QLLATSSTKGTLVRIFNTLDG--------------------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330 (403)
Q Consensus 271 ~~l~s~~~dg~~i~iwd~~~~--------------------~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iw 330 (403)
.+||+++.|| |+||.++.. +.+..+. .|.+.|+.+.|+-.|..|++.+.||.|++|
T Consensus 240 ~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~--~H~~~VWrv~wNmtGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 240 HLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD--DHNGEVWRVRWNMTGTILSSTGDDGCVRLW 315 (361)
T ss_pred eeEEEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeecc--CCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence 5789999999 999998631 1222333 378899999999999999999999999999
Q ss_pred EeecCC
Q 015650 331 NLKVNS 336 (403)
Q Consensus 331 d~~~~~ 336 (403)
...-..
T Consensus 316 kany~n 321 (361)
T KOG2445|consen 316 KANYNN 321 (361)
T ss_pred hhhhhh
Confidence 876544
No 131
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=1.1e-21 Score=174.90 Aligned_cols=284 Identities=14% Similarity=0.196 Sum_probs=211.4
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecc----cCcceeEEEEeeeCCeEEEeeCCCCCCC
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE----RGGGIGVVEMLFRCNILALVGGGPDPQY 153 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~s~~~d~~~ 153 (403)
....+|++-|+++.|+|++..|.+++ |+++.+|.-+....+...... ++...+.....|++++..+++.+..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~--- 337 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT--- 337 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc---
Confidence 45679999999999999996666555 888999998776555544333 2345578899999999999999988
Q ss_pred CCceEEEEECCCCc-eeE--EEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCc----eeeeEeeccCCCceeEEE
Q 015650 154 PLNKVMIWDDHQSR-CIG--ELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL----KLLHQIETIANPKGLCAV 222 (403)
Q Consensus 154 ~~~~i~iwd~~~~~-~~~--~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~ 222 (403)
|..++|..+... ... .+. |-..|.+++|.|.|.++. .|.+-+++-.-.. -.+..-+.|.....++++
T Consensus 338 --Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~ 415 (764)
T KOG1063|consen 338 --GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF 415 (764)
T ss_pred --CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence 999999833322 222 223 889999999999999888 4888888864311 112222346666677777
Q ss_pred eeCCCeEEEEeeCCccCeEEEEEccC----------C-------------------------------------------
Q 015650 223 SQGVGSLVLVCPGLQKGQVRVEHYAS----------K------------------------------------------- 249 (403)
Q Consensus 223 ~~~~~~~~~~~~g~~d~~i~v~d~~~----------~------------------------------------------- 249 (403)
-+. +. .+++ |.+...+|+|+... +
T Consensus 416 vn~-~~-~FVS-gAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~ 492 (764)
T KOG1063|consen 416 VNE-DL-QFVS-GADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETP 492 (764)
T ss_pred ccC-Cc-eeee-cccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecc
Confidence 664 22 2333 44667777776531 0
Q ss_pred ------------------------ceeEEeecCCceEEEEEcCCCCEEEEEeCCCc----EEEEEEcCCCcEEEEEecCC
Q 015650 250 ------------------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGT----LVRIFNTLDGTLLQEVRRGA 301 (403)
Q Consensus 250 ------------------------~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~----~i~iwd~~~~~~~~~~~~~~ 301 (403)
++..+.+|...|++++.+|+|+++|+++.... .|++|+..+...++.+..
T Consensus 493 ~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-- 570 (764)
T KOG1063|consen 493 LAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-- 570 (764)
T ss_pred cccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc--
Confidence 00234678899999999999999999987442 399999998888887876
Q ss_pred CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCC
Q 015650 302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG 381 (403)
Q Consensus 302 ~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (403)
|.-.|+.|+|||||++|++.+.|+++.+|....... ....+...+.|..
T Consensus 571 HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~-------------------------------~e~~fa~~k~HtR 619 (764)
T KOG1063|consen 571 HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK-------------------------------DEFRFACLKAHTR 619 (764)
T ss_pred cceEEEEEEECCCCcEEEEeecCceEEeeeeecccc-------------------------------hhhhhccccccce
Confidence 778999999999999999999999999999965542 1111344677788
Q ss_pred CceEEEeccCCCEEEEEccCCC
Q 015650 382 SPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 382 ~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
-|..+.|+||+.++++++.|.+
T Consensus 620 IIWdcsW~pde~~FaTaSRDK~ 641 (764)
T KOG1063|consen 620 IIWDCSWSPDEKYFATASRDKK 641 (764)
T ss_pred EEEEcccCcccceeEEecCCce
Confidence 8999999999999999999863
No 132
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.5e-22 Score=168.92 Aligned_cols=240 Identities=16% Similarity=0.217 Sum_probs=192.0
Q ss_pred CCCCeEEEEEcCCCC-EEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEE
Q 015650 84 PPPTLLHISFNQDHG-CFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (403)
Q Consensus 84 ~~~~i~~i~~s~d~~-~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iw 161 (403)
...+|.+..|.|+|. .+++++.+. +..||+.+.+......+.+.....+..+..++++.+++..+.. |.|.+.
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-----G~I~lL 330 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-----GHIHLL 330 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC-----ceEEee
Confidence 345789999999998 777777555 9999998776654455542233456677788888899999988 999999
Q ss_pred ECCCCceeEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCc--eeEEEeeCCCeEEEEeeCC
Q 015650 162 DDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPK--GLCAVSQGVGSLVLVCPGL 236 (403)
Q Consensus 162 d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~ 236 (403)
...+++.+..++-.+.|..++|+.|++.+. .+|.|++||++...+++.+... +.+ ..+|.+.++. ++|+ |+
T Consensus 331 hakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~--ylA~-GS 406 (514)
T KOG2055|consen 331 HAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGS--YLAT-GS 406 (514)
T ss_pred hhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCc--eEEe-cc
Confidence 999999999999999999999999998776 4899999999999888888542 333 4566667766 6776 77
Q ss_pred ccCeEEEEEccC-------CceeEEeecCCceEEEEEcCCCCEEEEEeC--CCcEEEEEEcCCCcEEEEEecCC-CcccE
Q 015650 237 QKGQVRVEHYAS-------KRTKFIMAHDSRIACFALTQDGQLLATSST--KGTLVRIFNTLDGTLLQEVRRGA-DRAEI 306 (403)
Q Consensus 237 ~d~~i~v~d~~~-------~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~--dg~~i~iwd~~~~~~~~~~~~~~-~~~~v 306 (403)
..|.|.|||..+ +.+..+..-...|++|.|++|+.+||.+|. +.. +++-.+.+......+.... .-+.|
T Consensus 407 ~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna-lrLVHvPS~TVFsNfP~~n~~vg~v 485 (514)
T KOG2055|consen 407 DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA-LRLVHVPSCTVFSNFPTSNTKVGHV 485 (514)
T ss_pred CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc-eEEEeccceeeeccCCCCCCcccce
Confidence 999999999765 334455566778999999999999988775 556 8999888877766665421 22579
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650 307 YSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (403)
Q Consensus 307 ~~l~~s~d~~~l~s~~~dg~v~iwd~~ 333 (403)
+||+|||.|.+||.|..+|.|.+|.+.
T Consensus 486 tc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 486 TCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEEecCCCceEEeecCCCceeeEeec
Confidence 999999999999999999999999985
No 133
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=3.6e-20 Score=159.65 Aligned_cols=262 Identities=17% Similarity=0.241 Sum_probs=197.7
Q ss_pred CCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC
Q 015650 86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ 165 (403)
Q Consensus 86 ~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~ 165 (403)
.-|.|++|.++|..+..-+++.|.||+..+.+.. +... .|...|.+++.-.++..+. ++.| ..|..|| ..
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~--k~~~-aH~ggv~~L~~lr~GtllS-GgKD-----Rki~~Wd-~~ 316 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRIS--KQVH-AHDGGVFSLCMLRDGTLLS-GGKD-----RKIILWD-DN 316 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEE--eEee-ecCCceEEEEEecCccEee-cCcc-----ceEEecc-cc
Confidence 5799999999998665444555999998655443 4444 6999999999999998777 8888 9999999 55
Q ss_pred CceeEEEe---cCCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeE
Q 015650 166 SRCIGELS---FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV 241 (403)
Q Consensus 166 ~~~~~~~~---~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 241 (403)
-+.++..+ ..+.|+.++-...+.++. +.+.|..=.++++-.+ ...+|......++.+|+.+.+ +++| .|+.+
T Consensus 317 y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~q~--~T~g-qdk~v 392 (626)
T KOG2106|consen 317 YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKNQL--LTCG-QDKHV 392 (626)
T ss_pred ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChhhe--eecc-CcceE
Confidence 55555554 456788877665554444 5666766666665433 334677788889999987753 3334 89999
Q ss_pred EEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 015650 242 RVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS 321 (403)
Q Consensus 242 ~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~ 321 (403)
++|+ ..++.-...-..++.|+.|+|.| .+|.|...|. ..+.|.++...+..-. ...+++.++|+|+|.+||.|
T Consensus 393 ~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~-w~V~d~e~~~lv~~~~---d~~~ls~v~ysp~G~~lAvg 465 (626)
T KOG2106|consen 393 RLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGR-WFVLDTETQDLVTIHT---DNEQLSVVRYSPDGAFLAVG 465 (626)
T ss_pred EEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccce-EEEEecccceeEEEEe---cCCceEEEEEcCCCCEEEEe
Confidence 9999 44444444567789999999999 8999999999 9999998855554333 46899999999999999999
Q ss_pred eCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccC
Q 015650 322 SDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD 401 (403)
Q Consensus 322 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~d 401 (403)
+.|+.|+||.++..... + .. +...++ ..++.+.||+|+++|.+-+.|
T Consensus 466 s~d~~iyiy~Vs~~g~~------------------------y----~r---~~k~~g--s~ithLDwS~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 466 SHDNHIYIYRVSANGRK------------------------Y----SR---VGKCSG--SPITHLDWSSDSQFLVSNSGD 512 (626)
T ss_pred cCCCeEEEEEECCCCcE------------------------E----EE---eeeecC--ceeEEeeecCCCceEEeccCc
Confidence 99999999999987730 0 00 111223 689999999999999987765
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=3.8e-21 Score=155.99 Aligned_cols=236 Identities=17% Similarity=0.168 Sum_probs=182.2
Q ss_pred CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcCCc
Q 015650 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADL 204 (403)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~ 204 (403)
.....|.++.|++....|+.++-| |.+++|++....+...++|..++.+++|.++...+. .||.|+.+|+.++
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWD-----gslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWD-----GSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEecc-----CcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCC
Confidence 356789999999876666666677 999999999998888999999999999999887777 6999999999887
Q ss_pred eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 015650 205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVR 284 (403)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~ 284 (403)
... .+..|..++.++...+..+. ++ +|+.|+.|++||.+.............|.++.. .|+.|+.|+.+.. |.
T Consensus 86 ~~~-~igth~~~i~ci~~~~~~~~--vI-sgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~-v~ 158 (323)
T KOG1036|consen 86 NED-QIGTHDEGIRCIEYSYEVGC--VI-SGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRK-VL 158 (323)
T ss_pred cce-eeccCCCceEEEEeeccCCe--EE-EcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCce-EE
Confidence 644 45578899999999976553 33 367999999999997544433334457888876 6778999999999 99
Q ss_pred EEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccccccc
Q 015650 285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP 364 (403)
Q Consensus 285 iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (403)
+||+++.......+.....-.+.++++-|++.-.++++-||.|.+=.++..+....
T Consensus 159 iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~s------------------------ 214 (323)
T KOG1036|consen 159 IYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQS------------------------ 214 (323)
T ss_pred EEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhh------------------------
Confidence 99999877655444333446799999999988899999999998877776632110
Q ss_pred ceeeeeeeeEEEEEeC------CCceEEEeccCCCEEEEEccCC
Q 015650 365 KYFSSEWSVAQFRLVE------GSPYIVAFGHQKNTVVILGMDG 402 (403)
Q Consensus 365 ~~~~~~~~~~~~~~~~------~~~~~~~fs~d~~~l~~~~~dG 402 (403)
....+...+..+ -+|+.++|||-.++|++|+.||
T Consensus 215 ----kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG 254 (323)
T KOG1036|consen 215 ----KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG 254 (323)
T ss_pred ----hceeEEeeecccCCceEEEEeceeEeccccceEEecCCCc
Confidence 111222222111 1789999999999999999998
No 135
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=3.1e-20 Score=169.03 Aligned_cols=317 Identities=16% Similarity=0.177 Sum_probs=220.7
Q ss_pred ccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEE-EeeCCCCCCCCC
Q 015650 78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILA-LVGGGPDPQYPL 155 (403)
Q Consensus 78 ~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~s~~~d~~~~~ 155 (403)
..++.++...|+++.=+|-=..+|.|..+| |.|+++...+.+ .+++ ..-..|++++|..||.. ++++...
T Consensus 195 v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil--~sFk-~d~g~VtslSFrtDG~p~las~~~~----- 266 (910)
T KOG1539|consen 195 VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL--MSFK-QDWGRVTSLSFRTDGNPLLASGRSN----- 266 (910)
T ss_pred EEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE--EEEE-ccccceeEEEeccCCCeeEEeccCC-----
Confidence 366888999999999999889999999665 999999988776 6676 23589999999988765 5566655
Q ss_pred ceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEE---ecCeEEEEEcCC--c--eeeeEeeccCCCceeEEEeeCC
Q 015650 156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD--L--KLLHQIETIANPKGLCAVSQGV 226 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~--~--~~~~~~~~~~~~~~~~~~~~~~ 226 (403)
|.+.+||++..+.+..+. |.+.|....|-+...+++ .|+.+++|=..+ | +.++.-.+|..+-.++.+.-..
T Consensus 267 G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~ 346 (910)
T KOG1539|consen 267 GDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ 346 (910)
T ss_pred ceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccC
Confidence 899999999998888777 889999999999888877 377766664443 3 3344434555554444443221
Q ss_pred CeEEEE---------------------------------------------------------------eeCCccCeEEE
Q 015650 227 GSLVLV---------------------------------------------------------------CPGLQKGQVRV 243 (403)
Q Consensus 227 ~~~~~~---------------------------------------------------------------~~g~~d~~i~v 243 (403)
...++. +..-.+..++.
T Consensus 347 g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t 426 (910)
T KOG1539|consen 347 GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT 426 (910)
T ss_pred cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence 111111 11122345555
Q ss_pred EEccCCce-eEE------eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe-cCCCcccEEEEEeCCCC
Q 015650 244 EHYASKRT-KFI------MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR-RGADRAEIYSLAFSSNA 315 (403)
Q Consensus 244 ~d~~~~~~-~~~------~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~-~~~~~~~v~~l~~s~d~ 315 (403)
|+++.+.. ... +.....+++++.++.|++.+.|...|. |-+|++++|-....+- ...|..+|++++...-+
T Consensus 427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~-Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n 505 (910)
T KOG1539|consen 427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGT-IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN 505 (910)
T ss_pred EeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCe-EEEEEcccCeeecccccCccccCceeEEEecCCC
Confidence 66555433 111 112367899999999999999999999 9999999999888883 23488999999999999
Q ss_pred CEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCC-C-Ccccccccccc-ccccee-e--eeeeeEEEEEeCCCceEEEec
Q 015650 316 QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP-T-LPTSSLSFIKG-VLPKYF-S--SEWSVAQFRLVEGSPYIVAFG 389 (403)
Q Consensus 316 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~-~~~~~~-~--~~~~~~~~~~~~~~~~~~~fs 389 (403)
+.+++++.+|.+++||+.+............... + ...+.+-.+.. .....+ . ...-+.++.+|.+.++.++||
T Consensus 506 ~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS 585 (910)
T KOG1539|consen 506 RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS 585 (910)
T ss_pred ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC
Confidence 9999999999999999999885444432211111 1 11111111110 000000 0 111234578899999999999
Q ss_pred cCCCEEEEEccCCC
Q 015650 390 HQKNTVVILGMDGR 403 (403)
Q Consensus 390 ~d~~~l~~~~~dG~ 403 (403)
|||++|++++.|++
T Consensus 586 ~DgrWlisasmD~t 599 (910)
T KOG1539|consen 586 PDGRWLISASMDST 599 (910)
T ss_pred CCCcEEEEeecCCc
Confidence 99999999999985
No 136
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=2.1e-21 Score=166.81 Aligned_cols=257 Identities=16% Similarity=0.163 Sum_probs=195.8
Q ss_pred CeEEEEEcCCCCEEEEEc---CCcEEEEEcCCCe--eEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEE
Q 015650 87 TLLHISFNQDHGCFAAGT---DHGFRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (403)
Q Consensus 87 ~i~~i~~s~d~~~l~~~~---~~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iw 161 (403)
.+.++.|+.... |++++ |..+++|.-+... ......+. +. .-.++.......++++++.. +.|+||
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~-gd--~~~Cv~~~s~S~y~~sgG~~-----~~Vkiw 106 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLT-GD--NAFCVACASQSLYEISGGQS-----GCVKIW 106 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccc-cc--hHHHHhhhhcceeeeccCcC-----ceeeeh
Confidence 488999987665 44443 4448999764331 11222232 22 22333333445899999988 999999
Q ss_pred ECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeecc-CCCceeEEEeeCCCeEEEEeeCC
Q 015650 162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGL 236 (403)
Q Consensus 162 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~ 236 (403)
|++...+.+.++ |...|+++.++....+++ ..|.|.|..+.++.....|... ...+..+.+++..+.++..+ +
T Consensus 107 dl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~a--s 184 (673)
T KOG4378|consen 107 DLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIA--S 184 (673)
T ss_pred hhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEee--c
Confidence 999766677777 999999999999888888 3678999999998877777654 33456889999877654433 4
Q ss_pred ccCeEEEEEccCCce--eEEeecCCceEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC
Q 015650 237 QKGQVRVEHYASKRT--KFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313 (403)
Q Consensus 237 ~d~~i~v~d~~~~~~--~~~~~~~~~i~~~~~sp~-g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~ 313 (403)
.+|.|.+||+..... .....|..+...|+|+|. ..+|++.+.|.. |.+||....+....+. ...+...++|++
T Consensus 185 d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~~s~~s~~~l~---y~~Plstvaf~~ 260 (673)
T KOG4378|consen 185 DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIYDIRSQASTDRLT---YSHPLSTVAFSE 260 (673)
T ss_pred cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEeecccccccceee---ecCCcceeeecC
Confidence 899999999988543 345789999999999994 567789999999 9999999877777776 456899999999
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCC
Q 015650 314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK 392 (403)
Q Consensus 314 d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~ 392 (403)
+|.+|+.|...|.|..||++..+. .+..+..|+..|++++|-+..
T Consensus 261 ~G~~L~aG~s~G~~i~YD~R~~k~----------------------------------Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 261 CGTYLCAGNSKGELIAYDMRSTKA----------------------------------PVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CceEEEeecCCceEEEEecccCCC----------------------------------CceEeeecccceeEEEeeecc
Confidence 999999999999999999998763 144567777788888886653
No 137
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.8e-23 Score=185.77 Aligned_cols=232 Identities=12% Similarity=0.213 Sum_probs=202.8
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceE
Q 015650 80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (403)
Q Consensus 80 ~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i 158 (403)
.+..|...|.|+..-..++.+++|++.. +.+|.+...... ..+. +|...|-++.|+.....++.+..+ |+|
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i--~S~~-~hespIeSl~f~~~E~Llaagsas-----gti 94 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI--TSLT-GHESPIESLTFDTSERLLAAGSAS-----GTI 94 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchh--heee-ccCCcceeeecCcchhhhcccccC-----Cce
Confidence 4566889999999978889999998665 889998655444 3455 799999999999999999999998 999
Q ss_pred EEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEee
Q 015650 159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (403)
Q Consensus 159 ~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (403)
++||++.++.++++. |...+..+.|+|-+.+.+ .|..+++||++...+.+.+.+|...+.++.|+|+|. +++.
T Consensus 95 K~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr--~v~~- 171 (825)
T KOG0267|consen 95 KVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR--WVAS- 171 (825)
T ss_pred eeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc--eeec-
Confidence 999999999999988 999999999999999997 599999999998889999999999999999999987 5555
Q ss_pred CCccCeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC
Q 015650 235 GLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313 (403)
Q Consensus 235 g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~ 313 (403)
|.+|..++|||+..+++ ..+..|.+.+.++.|+|..-++++|+.|++ |++||+++.+.+..... ....|.+++|+|
T Consensus 172 g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletfe~I~s~~~--~~~~v~~~~fn~ 248 (825)
T KOG0267|consen 172 GGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETFEVISSGKP--ETDGVRSLAFNP 248 (825)
T ss_pred cCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeeccceeEEeeccCC--ccCCceeeeecC
Confidence 55799999999988665 567889999999999999999999999999 99999999888877765 457899999999
Q ss_pred CCCEEEEEeCCC
Q 015650 314 NAQWLAVSSDKG 325 (403)
Q Consensus 314 d~~~l~s~~~dg 325 (403)
++..+++|....
T Consensus 249 ~~~~~~~G~q~s 260 (825)
T KOG0267|consen 249 DGKIVLSGEQIS 260 (825)
T ss_pred CceeeecCchhh
Confidence 999999886543
No 138
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=1.1e-21 Score=175.66 Aligned_cols=238 Identities=16% Similarity=0.204 Sum_probs=185.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCC---eEEEeeCCCCCCCCCceE
Q 015650 83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN---ILALVGGGPDPQYPLNKV 158 (403)
Q Consensus 83 ~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~~~d~~~~~~~i 158 (403)
.....|.+++.+|+|++||+|...| ++||++...+.. ..++ .|...|.++.|+.. ...|+++++| .-|
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~--~~~e-AHesEilcLeyS~p~~~~kLLASasrd-----RlI 528 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT--CFME-AHESEILCLEYSFPVLTNKLLASASRD-----RLI 528 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhh--hhee-cccceeEEEeecCchhhhHhhhhccCC-----ceE
Confidence 4456799999999999999998666 999999766654 3344 79999999999753 5679999999 999
Q ss_pred EEEECCCC-ceeEEEe-cCCceeEEEEecCc--eEEE---ecCeEEEEEcCCceeeeEeec-----cCCCceeEEEeeCC
Q 015650 159 MIWDDHQS-RCIGELS-FRSEVRSVKLRRDR--IIVV---LEQKIFVYNFADLKLLHQIET-----IANPKGLCAVSQGV 226 (403)
Q Consensus 159 ~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~~--~~~~---~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 226 (403)
.|+|+... .+++++. |...|+++.|.-.| ..++ .|..|++--.+.......+.. ....++.+++.|..
T Consensus 529 HV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~ 608 (1080)
T KOG1408|consen 529 HVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS 608 (1080)
T ss_pred EEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCc
Confidence 99998765 5677777 99999999998876 3333 466655433221111112211 12345567777766
Q ss_pred CeEEEEeeCCccCeEEEEEccCCce-eEEe---ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCC
Q 015650 227 GSLVLVCPGLQKGQVRVEHYASKRT-KFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD 302 (403)
Q Consensus 227 ~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~---~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~ 302 (403)
+. +++ ++.|..|+||++..++. +.++ .|++..-.+...|.|.||++.+.|.+ +.++|..+|+++..+.+ |
T Consensus 609 k~--v~t-~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt-l~~~Df~sgEcvA~m~G--H 682 (1080)
T KOG1408|consen 609 KL--VVT-VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT-LCFVDFVSGECVAQMTG--H 682 (1080)
T ss_pred ce--EEE-EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc-eEEEEeccchhhhhhcC--c
Confidence 64 443 34999999999998554 4454 46778889999999999999999999 99999999999999987 7
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650 303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (403)
Q Consensus 303 ~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~ 334 (403)
...|+.+.|.+|-++|++.+.||.|.||.+..
T Consensus 683 sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 683 SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chheeeeeecccchhheeecCCceEEEEECch
Confidence 78999999999999999999999999999843
No 139
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=5.8e-21 Score=158.83 Aligned_cols=188 Identities=15% Similarity=0.222 Sum_probs=152.1
Q ss_pred CeEEEeeCCCCCCCCCceEEEEECCC----------------CceeEEEe-cCCceeEEEEec--CceEEEe--cCeEEE
Q 015650 140 NILALVGGGPDPQYPLNKVMIWDDHQ----------------SRCIGELS-FRSEVRSVKLRR--DRIIVVL--EQKIFV 198 (403)
Q Consensus 140 ~~~~~~s~~~d~~~~~~~i~iwd~~~----------------~~~~~~~~-~~~~i~~~~~~~--~~~~~~~--d~~i~i 198 (403)
+..+.++-+.. |.|+||++.. .+++.++. |...=.+++|+| .|.++.. -+.|++
T Consensus 164 ~~~~~aswse~-----G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~l 238 (440)
T KOG0302|consen 164 NEVLCASWSEN-----GRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHL 238 (440)
T ss_pred Ccceeeeeccc-----CcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEe
Confidence 55677777777 9999999742 24556666 778888999999 4555553 467999
Q ss_pred EEcCCcee---eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC---ceeEEeecCCceEEEEEcCCCCE
Q 015650 199 YNFADLKL---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQDGQL 272 (403)
Q Consensus 199 ~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~---~~~~~~~~~~~i~~~~~sp~g~~ 272 (403)
|...++.- ...+.+|...|..++|+|..++++..| +-||.|+|||+|.+ .....++|.+.|+.|.|+.+-.+
T Consensus 239 w~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaSc--S~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~l 316 (440)
T KOG0302|consen 239 WEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASC--SCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPL 316 (440)
T ss_pred eeeccCceeecCccccccccchhhhccCCccCceEEee--ecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcce
Confidence 99887643 233557888999999999988866554 57999999999986 45566899999999999998889
Q ss_pred EEEEeCCCcEEEEEEcCC---CcEEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCcEEEEEeecCCC
Q 015650 273 LATSSTKGTLVRIFNTLD---GTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 273 l~s~~~dg~~i~iwd~~~---~~~~~~~~~~~~~~~v~~l~~s~d~-~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
||+|+.||+ ++|||++. ++++..|+. |..+|++|.|+|.. ..|++++.|..|.|||+.....
T Consensus 317 LasG~DdGt-~~iwDLR~~~~~~pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 317 LASGGDDGT-LSIWDLRQFKSGQPVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred eeecCCCce-EEEEEhhhccCCCcceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 999999999 99999975 567888886 78999999999854 5788888999999999987653
No 140
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=5.7e-21 Score=155.57 Aligned_cols=245 Identities=15% Similarity=0.180 Sum_probs=194.4
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcC------C--------Ce------------------------eE
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCD------P--------FR------------------------EI 119 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~------~--------~~------------------------~~ 119 (403)
..+.+|.+.|++|+|++.+.++++++ |.+-.||... . .+ ..
T Consensus 184 ~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv 263 (481)
T KOG0300|consen 184 ATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV 263 (481)
T ss_pred eeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee
Confidence 66899999999999999999999998 5558888731 0 00 01
Q ss_pred EEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCe
Q 015650 120 FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQK 195 (403)
Q Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~ 195 (403)
....+. +|...|.+..|-..+..+++++-| .+-.+||+++|+.+..+. |....+.++-+|..++++ -|.+
T Consensus 264 Pl~~lt-gH~~vV~a~dWL~gg~Q~vTaSWD-----RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtT 337 (481)
T KOG0300|consen 264 PLMRLT-GHRAVVSACDWLAGGQQMVTASWD-----RTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTT 337 (481)
T ss_pred eeeeee-ccccceEehhhhcCcceeeeeecc-----ccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCce
Confidence 112333 677777788888888889999998 999999999999999999 999999999999999888 3889
Q ss_pred EEEEEcCCc-eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc--eeEEeecCCceEEEEEcCCCCE
Q 015650 196 IFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQL 272 (403)
Q Consensus 196 i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~--~~~~~~~~~~i~~~~~sp~g~~ 272 (403)
.++||++.. ..+..|++|...+....|..+.+ ++ +|+.|.+|++||+++.+ +.++ ....+++.++.+..+.+
T Consensus 338 FRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~---vV-SgSDDrTvKvWdLrNMRsplATI-RtdS~~NRvavs~g~~i 412 (481)
T KOG0300|consen 338 FRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR---VV-SGSDDRTVKVWDLRNMRSPLATI-RTDSPANRVAVSKGHPI 412 (481)
T ss_pred eEeccchhhcceeeeecccccceeEEEEecCCc---ee-ecCCCceEEEeeeccccCcceee-ecCCccceeEeecCCce
Confidence 999999853 45677899999999999998865 33 47899999999999843 3333 34677899999988888
Q ss_pred EEEEeCCCcEEEEEEcCCCcEEEEEe---cCCCcccEEEEEeCCCCC--EEEEEeCCCcEEEEEeecCC
Q 015650 273 LATSSTKGTLVRIFNTLDGTLLQEVR---RGADRAEIYSLAFSSNAQ--WLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 273 l~s~~~dg~~i~iwd~~~~~~~~~~~---~~~~~~~v~~l~~s~d~~--~l~s~~~dg~v~iwd~~~~~ 336 (403)
|+.--.+.. |++||+...++ ..+. ...|...|+|++|..+.. -|++++.|..+.-|+++.++
T Consensus 413 IAiPhDNRq-vRlfDlnG~Rl-aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 413 IAIPHDNRQ-VRLFDLNGNRL-ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred EEeccCCce-EEEEecCCCcc-ccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 888877777 99999864433 3332 223778899999986543 58899999999999998875
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.8e-20 Score=165.72 Aligned_cols=231 Identities=16% Similarity=0.249 Sum_probs=188.0
Q ss_pred cceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEE-Ee--cCCceeEEEEecCceEEE--ecCeEEEEEcC
Q 015650 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE-LS--FRSEVRSVKLRRDRIIVV--LEQKIFVYNFA 202 (403)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~-~~--~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~ 202 (403)
.+..|++++|+.+...++.+-.+ |.|.||++..+-.... +. ....|.+++|.+.++++. .+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~-----g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTD-----GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccC-----CcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecc
Confidence 56789999999988888888888 9999999988744333 33 467899999998888777 69999999999
Q ss_pred CceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE---EeecCCceEEEEEcCCCCEEEEEeCC
Q 015650 203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF---IMAHDSRIACFALTQDGQLLATSSTK 279 (403)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~---~~~~~~~i~~~~~sp~g~~l~s~~~d 279 (403)
+++.+..+....+.+..++.+|.++.+.+ |++||.+..++...+.+.. +...++.|.+++|+|++..|++|+.|
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~I---gcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPENTILAI---GCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCccceEEe---ecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 99999999999999999999999886554 4589977777777666533 34456889999999999999999999
Q ss_pred CcEEEEEEcCCCcEEEEEec-----CC-CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcc
Q 015650 280 GTLVRIFNTLDGTLLQEVRR-----GA-DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT 353 (403)
Q Consensus 280 g~~i~iwd~~~~~~~~~~~~-----~~-~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (403)
|. |++||+.++..+..... .. ...-|+++.|-.+ ..|++|..-|+|++||...+...
T Consensus 176 g~-Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLi--------------- 238 (691)
T KOG2048|consen 176 GV-IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLI--------------- 238 (691)
T ss_pred ce-EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchh---------------
Confidence 99 99999999887763221 11 2245888888755 46889999999999999998842
Q ss_pred cccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 354 SSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
..++.|.+.|.+++..+++++++++|.||.
T Consensus 239 --------------------qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ 268 (691)
T KOG2048|consen 239 --------------------QSHSCHDADVLALAVADNEDRVFSAGVDPK 268 (691)
T ss_pred --------------------hhhhhhhcceeEEEEcCCCCeEEEccCCCc
Confidence 224566788999999999999999999974
No 142
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.5e-21 Score=161.69 Aligned_cols=241 Identities=17% Similarity=0.230 Sum_probs=178.1
Q ss_pred EEEEEcCC-------CCEEEEEc-CCcEEEEEcCCCeeEEE-----------------Eec-ccCcceeEEEEeeeCC-e
Q 015650 89 LHISFNQD-------HGCFAAGT-DHGFRIYNCDPFREIFR-----------------RDF-ERGGGIGVVEMLFRCN-I 141 (403)
Q Consensus 89 ~~i~~s~d-------~~~l~~~~-~~~i~iw~~~~~~~~~~-----------------~~~-~~~~~~~v~~~~~~~~-~ 141 (403)
.|++|... |.++|.|+ +..|.|||++-....+. +.. ..+|...+.+++|+.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 56666432 57999999 55699999853221110 000 0257777788888765 5
Q ss_pred EEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCc-eEEE---ecCeEEEEEcCCceee-eEeeccCC
Q 015650 142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDR-IIVV---LEQKIFVYNFADLKLL-HQIETIAN 215 (403)
Q Consensus 142 ~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~-~~~~---~d~~i~i~d~~~~~~~-~~~~~~~~ 215 (403)
..|++++.| .+|++||+.++++...+. |...|.++.|+|.. .+++ .|++|.+.|++..... ..+ ...+
T Consensus 257 nVLaSgsaD-----~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g 330 (463)
T KOG0270|consen 257 NVLASGSAD-----KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDG 330 (463)
T ss_pred eeEEecCCC-----ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-Eecc
Confidence 578999999 999999999999999999 89999999999964 4444 5999999999853222 222 2346
Q ss_pred CceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeEEeecCCceEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCc
Q 015650 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGT 292 (403)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~-g~~l~s~~~dg~~i~iwd~~~~~ 292 (403)
.+..++|.+.....+++ +..||.++-+|+|. +.+..+++|.+.|.++++++. ..+|++++.|+. |++|++....
T Consensus 331 ~VEkv~w~~~se~~f~~--~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~ 407 (463)
T KOG0270|consen 331 EVEKVAWDPHSENSFFV--STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDS 407 (463)
T ss_pred ceEEEEecCCCceeEEE--ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCC
Confidence 67889999988776665 46899999999998 567889999999999999884 456889999999 9999986543
Q ss_pred EEEEEecCCCcccEEEEEeCCCCC-EEEEEeCCCcEEEEEeecCCCC
Q 015650 293 LLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSGS 338 (403)
Q Consensus 293 ~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~~~dg~v~iwd~~~~~~~ 338 (403)
..........-+...|.++.|+-. +|+.|+..+.++|||+.+...+
T Consensus 408 ~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 408 PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 321111101123467778888665 5778888889999999988753
No 143
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=1.7e-20 Score=153.41 Aligned_cols=281 Identities=15% Similarity=0.204 Sum_probs=203.8
Q ss_pred cccCCCCCCeEEEEEcC-----CCCEEEEEcCCcEEEEEcCCCe--eEEEEecccCcceeEEEEeeeCC----eEEEeeC
Q 015650 79 STSSSPPPTLLHISFNQ-----DHGCFAAGTDHGFRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCN----ILALVGG 147 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~-----d~~~l~~~~~~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~----~~~~~s~ 147 (403)
+....|..+|..++|++ +-+.+|+.+.+.+.||...... ..+.......+......++|.-+ ..+++.+
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 45677889999999985 2367788878889999986544 33333333346666666666432 4566777
Q ss_pred CCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEe---eccCCCcee
Q 015650 148 GPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQI---ETIANPKGL 219 (403)
Q Consensus 148 ~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~---~~~~~~~~~ 219 (403)
+.- |.|+|.|+.++++...+. |...|+.+.+.|+...++ .|..|++|++++..++..| .+|.+.+-.
T Consensus 112 G~~-----GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLS 186 (385)
T KOG1034|consen 112 GYL-----GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLS 186 (385)
T ss_pred cce-----eEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEE
Confidence 776 999999999999999998 999999999999874333 4899999999999998887 567888888
Q ss_pred EEEeeCCCeEEEEeeCCccCeEEEEEccCCce-----------------------------eEEeecCCceEEEEEcCCC
Q 015650 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----------------------------KFIMAHDSRIACFALTQDG 270 (403)
Q Consensus 220 ~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-----------------------------~~~~~~~~~i~~~~~sp~g 270 (403)
+.|+.+++ .+++.| .|..|++|++..++. .....|...|.|+.| =|
T Consensus 187 vD~~~~gd--~i~ScG-mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~g 261 (385)
T KOG1034|consen 187 VDFSLDGD--RIASCG-MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FG 261 (385)
T ss_pred EEEcCCCC--eeeccC-CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--Hh
Confidence 88888888 566655 899999999984221 012346677777777 46
Q ss_pred CEEEEEeCCCcEEEEEEc-CCCc-------------EEEEEecCCCcccEEEE--EeCCCCCEEEEEeCCCcEEEEEeec
Q 015650 271 QLLATSSTKGTLVRIFNT-LDGT-------------LLQEVRRGADRAEIYSL--AFSSNAQWLAVSSDKGTVHVFNLKV 334 (403)
Q Consensus 271 ~~l~s~~~dg~~i~iwd~-~~~~-------------~~~~~~~~~~~~~v~~l--~~s~d~~~l~s~~~dg~v~iwd~~~ 334 (403)
.++++-+-++. |..|.. +-.+ .+.++.- ....|+-| +|.|-+++||.|...|.|++||++.
T Consensus 262 d~ilSkscena-I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 262 DFILSKSCENA-IVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDN 338 (385)
T ss_pred hheeecccCce-EEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCcEEEEECCC
Confidence 78888888888 999976 1111 2223332 12344544 5567788999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 335 NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
.++..-.. .........|...+||-||..|+..+.||+
T Consensus 339 ~ep~~~tt-------------------------------l~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~ 376 (385)
T KOG1034|consen 339 NEPPKCTT-------------------------------LTHSKSGSTVRQTSFSRDGSILVLVCDDGT 376 (385)
T ss_pred CCCccCce-------------------------------EEeccccceeeeeeecccCcEEEEEeCCCc
Confidence 87521100 001122357888999999999999999985
No 144
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2e-20 Score=152.41 Aligned_cols=204 Identities=16% Similarity=0.204 Sum_probs=151.2
Q ss_pred ecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCce-----eEEEecCCceeEEEEecCceEEE----ec
Q 015650 123 DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC-----IGELSFRSEVRSVKLRRDRIIVV----LE 193 (403)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~----~d 193 (403)
.+. +|...|++++|+.|+..|++.+.| +.|++|+++.... ++.--.-+..+.+.|.||.+-++ ..
T Consensus 81 ~LK-gH~~~vt~~~FsSdGK~lat~~~D-----r~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 81 VLK-GHKKEVTDVAFSSDGKKLATISGD-----RSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred hhh-ccCCceeeeEEcCCCceeEEEeCC-----ceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC
Confidence 344 899999999999999999999999 9999999876432 21111234678899999977655 36
Q ss_pred CeEEEEEcCC---ceeeeEe---e----ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEE
Q 015650 194 QKIFVYNFAD---LKLLHQI---E----TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIAC 263 (403)
Q Consensus 194 ~~i~i~d~~~---~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~ 263 (403)
+++++|.+.. |.....+ . .....+..+.+--.+...++.++ +.|..|.+|+++.+.+..+......-+.
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsa-s~dt~i~lw~lkGq~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSA-SLDTKICLWDLKGQLLQSIDTNQSSNYD 233 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEe-cCCCcEEEEecCCceeeeeccccccccc
Confidence 7899998753 2211111 0 01223344445444555566653 4899999999998888888877777888
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEEcC---CCc---EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650 264 FALTQDGQLLATSSTKGTLVRIFNTL---DGT---LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (403)
Q Consensus 264 ~~~sp~g~~l~s~~~dg~~i~iwd~~---~~~---~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~ 334 (403)
.+.||+|++|++++..-. |+||..- .|+ ..+.+....|...|..++|+++...+++.+.||+++|||++-
T Consensus 234 aavSP~GRFia~~gFTpD-VkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPD-VKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred eeeCCCCcEEEEecCCCC-ceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 999999999999998888 9999862 232 222333334889999999999999999999999999999864
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.7e-20 Score=171.20 Aligned_cols=234 Identities=17% Similarity=0.195 Sum_probs=182.8
Q ss_pred CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC-ceeEEEe-cCCceeEEEEecCceEEE-ecCeEEEEEcCC
Q 015650 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-RCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFAD 203 (403)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~ 203 (403)
.|..+.+.++|.+++.++++++.| |.|++|+.... +.-..+. +...|.+++......+.. .+++|.+|.+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsd-----g~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSD-----GDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCC-----CceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCC
Confidence 488889999999999999999999 99999987665 4444455 777788887766633333 589999999988
Q ss_pred ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcE
Q 015650 204 LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTL 282 (403)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~ 282 (403)
++.-..+....-++..++++-+++ +++. |+.|-.|++.++.. .....+.+|..+|.++.|+|.+.+||+.+.||.
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~--~iaa-gsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~- 161 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGK--MIAA-GSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK- 161 (933)
T ss_pred CCccceeeeeeccceEEEEecCCc--EEEe-ecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce-
Confidence 766555555567889999998887 3443 56899999999877 566788999999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEEecCC------CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccc
Q 015650 283 VRIFNTLDGTLLQEVRRGA------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL 356 (403)
Q Consensus 283 i~iwd~~~~~~~~~~~~~~------~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (403)
|+|||+.++.+..++.+-. ....+..++|+|+|..|+..+.|+.|++|+....+....+.
T Consensus 162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr-------------- 227 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR-------------- 227 (933)
T ss_pred EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec--------------
Confidence 9999999988777665311 13457789999999999999999999999999887532221
Q ss_pred ccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650 357 SFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG 402 (403)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG 402 (403)
...+...+.+++|+|.|+|||+++-||
T Consensus 228 -------------------~~~~ss~~~~~~wsPnG~YiAAs~~~g 254 (933)
T KOG1274|consen 228 -------------------DKLSSSKFSDLQWSPNGKYIAASTLDG 254 (933)
T ss_pred -------------------ccccccceEEEEEcCCCcEEeeeccCC
Confidence 112223366677777777777777766
No 146
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=3.6e-20 Score=157.81 Aligned_cols=248 Identities=12% Similarity=0.106 Sum_probs=183.4
Q ss_pred cccCCCCCCeEEEEEcCCC--CEEEEEcCCc-EEEEEcCCCeeE--EEEecccCcceeEEEEeeeCC-eEEEeeCCCCCC
Q 015650 79 STSSSPPPTLLHISFNQDH--GCFAAGTDHG-FRIYNCDPFREI--FRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQ 152 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~--~~l~~~~~~~-i~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~ 152 (403)
....-+..+|++++|+|.. +++|+|+..| |-+||+.+.++. -...+. .|...|.++.|+|. ...+++.+.|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyD-- 256 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYD-- 256 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccC--
Confidence 4456688999999999965 5677777655 999999533221 112333 68899999999985 4457777888
Q ss_pred CCCceEEEEECCCCceeEEEe---cCCceeEEEEecCceEEE-e--cCeEEEEEcCCcee-eeEeeccCCCceeEEEeeC
Q 015650 153 YPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV-L--EQKIFVYNFADLKL-LHQIETIANPKGLCAVSQG 225 (403)
Q Consensus 153 ~~~~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~-~--d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~ 225 (403)
|+|++-|++.+..-..+. ....+..+.|+.+...++ . =|...+||++++.. ...+..|...|..++++|-
T Consensus 257 ---GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 257 ---GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV 333 (498)
T ss_pred ---ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence 999999998874333332 344566777877654444 3 24789999998544 6667778889999999998
Q ss_pred CCeEEEEeeCCccCeEEEEEccC---Cc--eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEc----CCCcEEEE
Q 015650 226 VGSLVLVCPGLQKGQVRVEHYAS---KR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT----LDGTLLQE 296 (403)
Q Consensus 226 ~~~~~~~~~g~~d~~i~v~d~~~---~~--~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~----~~~~~~~~ 296 (403)
...+ +++ ++.|++.+|||++. +. ......|...|.+..|||.+-.|++.+.|.. |+|||. ....+..+
T Consensus 334 ~p~~-laT-~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 334 CPWF-LAT-ASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCISAKDEPLGT 410 (498)
T ss_pred Cchh-eee-cccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccccccCCccce
Confidence 8764 444 35899999999987 22 2445679999999999998888999999999 999998 33445555
Q ss_pred EecCCCcc----cEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 297 VRRGADRA----EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 297 ~~~~~~~~----~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
+.- .+.. ......|.|+..+|++|-.-..|-|+|-+.++
T Consensus 411 I~H-n~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 411 IPH-NNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred eec-cCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 541 1111 24457899999999999988889999888776
No 147
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=2.3e-19 Score=160.21 Aligned_cols=290 Identities=14% Similarity=0.173 Sum_probs=204.0
Q ss_pred CCCCCCCccccCCCCCCeEEEEEcCCCC---EEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEee
Q 015650 71 MPLPSPAESTSSSPPPTLLHISFNQDHG---CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVG 146 (403)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~~i~~s~d~~---~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s 146 (403)
.+.+........+|..+|+|+.|-|+.+ ++++|+ |+.|.+|.++.........+. +|...+.++.-... ....
T Consensus 40 dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~-g~~~~~~cv~a~~~--~~~~ 116 (764)
T KOG1063|consen 40 DPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQ-GHCKECVCVVARSS--VMTC 116 (764)
T ss_pred CcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeec-CcceeEEEEEeeee--EEEe
Confidence 3444455678899999999999999887 788887 556999999866666667776 46666666543332 2222
Q ss_pred CCCCCCCCCceEEEEECCCCc--eeEEEec-CC--ceeEEEEec-CceEEE-e---cCeEEEEEcCC--ceeeeEeeccC
Q 015650 147 GGPDPQYPLNKVMIWDDHQSR--CIGELSF-RS--EVRSVKLRR-DRIIVV-L---EQKIFVYNFAD--LKLLHQIETIA 214 (403)
Q Consensus 147 ~~~d~~~~~~~i~iwd~~~~~--~~~~~~~-~~--~i~~~~~~~-~~~~~~-~---d~~i~i~d~~~--~~~~~~~~~~~ 214 (403)
...+ +.+.+||.+..+ +...+.. .. -..++++.+ .+.++. . +..|.+|.-.. .+.+..+.+|.
T Consensus 117 ~~ad-----~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~ 191 (764)
T KOG1063|consen 117 KAAD-----GTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHT 191 (764)
T ss_pred eccC-----ceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccc
Confidence 2445 899999986555 3333331 11 223555555 344444 3 44566665443 25677889999
Q ss_pred CCceeEEEeeCCC-eEEEEeeCCccCeEEEEEccCCc-------------------------e-------eEEeecCCce
Q 015650 215 NPKGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYASKR-------------------------T-------KFIMAHDSRI 261 (403)
Q Consensus 215 ~~~~~~~~~~~~~-~~~~~~~g~~d~~i~v~d~~~~~-------------------------~-------~~~~~~~~~i 261 (403)
+.|..++|..-+. .++++ +++.|..|+||.+.-.. + ..+.+|.++|
T Consensus 192 DWIrsl~f~~~~~~~~~la-S~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV 270 (764)
T KOG1063|consen 192 DWIRSLAFARLGGDDLLLA-SSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWV 270 (764)
T ss_pred hhhhhhhhhccCCCcEEEE-ecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccce
Confidence 9999999987766 55555 47799999999864311 0 1134899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEEcCCC--cEEEEEecC---CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 262 ACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQEVRRG---ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 262 ~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~--~~~~~~~~~---~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
+++.|+|.+..|++++.|.+ +.+|.-.+. --+..++.+ .......+..|+|++..+++-+..|..++|......
T Consensus 271 ~sv~W~p~~~~LLSASaDks-miiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~ 349 (764)
T KOG1063|consen 271 YSVWWHPEGLDLLSASADKS-MIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT 349 (764)
T ss_pred EEEEEccchhhheecccCcc-eEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc
Confidence 99999999999999999999 999975433 333333321 123468899999999999999999999999922221
Q ss_pred CCCCCCCCCCCCCCCcccccccccccccceeeeeeeeE-EEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA-QFRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
.|... -+.+|-+.|..++|+|.|.+|++++.|-|
T Consensus 350 ---------------------------------~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQT 384 (764)
T KOG1063|consen 350 ---------------------------------FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQT 384 (764)
T ss_pred ---------------------------------ceeeccccccccccceeeeecCCCCEEEEeccccc
Confidence 23222 25677889999999999999999999854
No 148
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=8.1e-20 Score=152.05 Aligned_cols=242 Identities=10% Similarity=0.116 Sum_probs=171.0
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEE--cCCc-EEEEEcCCC--------------eeEEEEecccCcceeEEEEeeeCCe
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAG--TDHG-FRIYNCDPF--------------REIFRRDFERGGGIGVVEMLFRCNI 141 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~--~~~~-i~iw~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~ 141 (403)
.....|.+.|+.+.-++-++-.+++ ++.| |.||++... +.....++. +|...-+.+.|+|-.
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~-ghk~EGy~LdWSp~~ 223 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN-GHKGEGYGLDWSPIK 223 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEec-ccCccceeeeccccc
Confidence 4466788888888888776443333 4766 999998421 111123444 677778899999832
Q ss_pred -EEEeeCCCCCCCCCceEEEEECCCCceeEE---Ee-cCCceeEEEEecCceEEE----ecCeEEEEEcCCcee--eeEe
Q 015650 142 -LALVGGGPDPQYPLNKVMIWDDHQSRCIGE---LS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKL--LHQI 210 (403)
Q Consensus 142 -~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~---~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~--~~~~ 210 (403)
-.+++|+.. +.|++|...+|.-... +. |...|..++|+|...-++ .|++|+|||++.+.. ....
T Consensus 224 ~g~LlsGDc~-----~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~ 298 (440)
T KOG0302|consen 224 TGRLLSGDCV-----KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST 298 (440)
T ss_pred ccccccCccc-----cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe
Confidence 236666665 8899999888754322 22 899999999999654333 599999999998722 2223
Q ss_pred eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC----CceeEEeecCCceEEEEEcC-CCCEEEEEeCCCcEEEE
Q 015650 211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRI 285 (403)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~----~~~~~~~~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~i 285 (403)
+.|...|..+.|+..-. ++++ |..||+++|||++. ..+..++-|..+|++|.|+| +...|++++.|.. |.|
T Consensus 299 kAh~sDVNVISWnr~~~--lLas-G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q-iti 374 (440)
T KOG0302|consen 299 KAHNSDVNVISWNRREP--LLAS-GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ-ITI 374 (440)
T ss_pred eccCCceeeEEccCCcc--eeee-cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCc-EEE
Confidence 77888888888877655 5665 66999999999998 44568899999999999999 4567888888999 999
Q ss_pred EEcCCCc----------------EEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCcEEEEE
Q 015650 286 FNTLDGT----------------LLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFN 331 (403)
Q Consensus 286 wd~~~~~----------------~~~~~~~~~~~~~v~~l~~s~d~-~~l~s~~~dg~v~iwd 331 (403)
||+.-.. +.+.+-.|.....|..+.|++.- .+|++.+.|| +.||.
T Consensus 375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred EEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 9985311 01112222234568889999854 3777888888 55554
No 149
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=1.6e-19 Score=160.73 Aligned_cols=263 Identities=12% Similarity=0.172 Sum_probs=195.7
Q ss_pred CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC
Q 015650 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (403)
Q Consensus 87 ~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~ 166 (403)
.|+.++|-|||..|+.+.++.+.|||...+... .+++ +|...|.+++|+.+|..+++|+.| ..|.+|+- .-
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~ll--qtLK-gHKDtVycVAys~dGkrFASG~aD-----K~VI~W~~-kl 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLL--QPLK-GHKDTVYCVAYAKDGKRFASGSAD-----KSVIIWTS-KL 84 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccc--cccc-cccceEEEEEEccCCceeccCCCc-----eeEEEecc-cc
Confidence 899999999999999999999999998877765 7887 899999999999999999999999 99999983 33
Q ss_pred ceeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEE
Q 015650 167 RCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE 244 (403)
Q Consensus 167 ~~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~ 244 (403)
+-+..+.|...|.|+.|+|-...++ +=+..-+|........+ .+ ....+.+++|..||. +++. |..+|+|.+-
T Consensus 85 EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-~k-ss~R~~~CsWtnDGq--ylal-G~~nGTIsiR 159 (1081)
T KOG1538|consen 85 EGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-HK-SSSRIICCSWTNDGQ--YLAL-GMFNGTISIR 159 (1081)
T ss_pred cceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-hh-hheeEEEeeecCCCc--EEEE-eccCceEEee
Confidence 4445566999999999999887777 44567788865433221 11 122334455555554 5554 5588999987
Q ss_pred EccCCceeEEe---ecCCceEEEEEcCCC-----CEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCC
Q 015650 245 HYASKRTKFIM---AHDSRIACFALTQDG-----QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ 316 (403)
Q Consensus 245 d~~~~~~~~~~---~~~~~i~~~~~sp~g-----~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~ 316 (403)
+-...+...+. +.+.+|.+++|+|.. ..++......+ +.++.+ +|+.+..-+. -.-...++.+-++|.
T Consensus 160 Nk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~L-sG~~Igk~r~--L~FdP~CisYf~NGE 235 (1081)
T KOG1538|consen 160 NKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQL-SGKQIGKDRA--LNFDPCCISYFTNGE 235 (1081)
T ss_pred cCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEe-cceeeccccc--CCCCchhheeccCCc
Confidence 65554444443 467889999999953 46777778788 888876 5665543332 223467899999999
Q ss_pred EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEE
Q 015650 317 WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVV 396 (403)
Q Consensus 317 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~ 396 (403)
+++.|+.|+.+++|--+--. ..++..-+..++.|+..|++++++
T Consensus 236 y~LiGGsdk~L~~fTR~Gvr------------------------------------LGTvg~~D~WIWtV~~~PNsQ~v~ 279 (1081)
T KOG1538|consen 236 YILLGGSDKQLSLFTRDGVR------------------------------------LGTVGEQDSWIWTVQAKPNSQYVV 279 (1081)
T ss_pred EEEEccCCCceEEEeecCeE------------------------------------EeeccccceeEEEEEEccCCceEE
Confidence 99999999999998543221 111111234688899999999999
Q ss_pred EEccCCC
Q 015650 397 ILGMDGR 403 (403)
Q Consensus 397 ~~~~dG~ 403 (403)
.|+.|||
T Consensus 280 ~GCqDGT 286 (1081)
T KOG1538|consen 280 VGCQDGT 286 (1081)
T ss_pred EEEccCe
Confidence 9999997
No 150
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=9.6e-20 Score=146.56 Aligned_cols=293 Identities=17% Similarity=0.198 Sum_probs=197.0
Q ss_pred CEEEEEc-----CCcEEEEEcCCCeeE-EEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCC--CceEEEEECCCC--
Q 015650 98 GCFAAGT-----DHGFRIYNCDPFREI-FRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYP--LNKVMIWDDHQS-- 166 (403)
Q Consensus 98 ~~l~~~~-----~~~i~iw~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~--~~~i~iwd~~~~-- 166 (403)
-.+.+|. ++.|.+.+++..... ..+.|. ++...|..++-+|- ...+++.-.+.... ...+.||.+...
T Consensus 27 icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~-h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~ 105 (370)
T KOG1007|consen 27 ICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFF-HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG 105 (370)
T ss_pred eEEEEeccccCCcceeEEEEecCccchhhhhhhh-cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccC
Confidence 3455554 455888877655433 334454 77888999888774 33444433321111 135789987543
Q ss_pred -------ceeEEEe--cCCceeEEEEecCceEEE--ecCeEEEEEcCCcee-eeEeec-----cCCCceeEEEeeCCCeE
Q 015650 167 -------RCIGELS--FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKL-LHQIET-----IANPKGLCAVSQGVGSL 229 (403)
Q Consensus 167 -------~~~~~~~--~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~ 229 (403)
+++..+. +-+.|.++.|.|++..++ .|+.|.+|++..+.. +..+.. +......-+|+|..+..
T Consensus 106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn 185 (370)
T KOG1007|consen 106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN 185 (370)
T ss_pred ccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence 3344444 456899999999988777 699999999987655 333321 23345567888866655
Q ss_pred EEEeeCCccCeEEEEEccCCce--eEEeecCCceEEEEEcCCCC-EEEEEeCCCcEEEEEEcCCC-cEEEEEecCCCccc
Q 015650 230 VLVCPGLQKGQVRVEHYASKRT--KFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAE 305 (403)
Q Consensus 230 ~~~~~g~~d~~i~v~d~~~~~~--~~~~~~~~~i~~~~~sp~g~-~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~ 305 (403)
.+++ ..|+++..||+++... ..-.+|...+..+.|+|+.. +|++|+.||. |+|||++.. .++.++.+ |...
T Consensus 186 qv~t--t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~tk~pv~el~~--HsHW 260 (370)
T KOG1007|consen 186 QVAT--TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKTKFPVQELPG--HSHW 260 (370)
T ss_pred eEEE--eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCCCccccccCC--CceE
Confidence 5665 3589999999998432 33457999999999999765 5788999999 999999864 46666665 6779
Q ss_pred EEEEEeCCCC-CEEEEEeCCCcEEEEEeecCCCCCCCCC-CCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCc
Q 015650 306 IYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEP-RSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSP 383 (403)
Q Consensus 306 v~~l~~s~d~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (403)
|+++.|+|.. ++|++++.|..|.+|....-..++.++. ....+....++.-+. + .| ..-.+.++..|++.|
T Consensus 261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~-k-pL-----~dg~l~tydehEDSV 333 (370)
T KOG1007|consen 261 VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERV-K-PL-----QDGQLETYDEHEDSV 333 (370)
T ss_pred EEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhc-c-cc-----cccccccccccccce
Confidence 9999999954 5678999999999999877665554442 222222221111110 0 11 112244577889999
Q ss_pred eEEEecc-CCCEEEEEccCCC
Q 015650 384 YIVAFGH-QKNTVVILGMDGR 403 (403)
Q Consensus 384 ~~~~fs~-d~~~l~~~~~dG~ 403 (403)
++++||. |.-.+|+-+.||.
T Consensus 334 Y~~aWSsadPWiFASLSYDGR 354 (370)
T KOG1007|consen 334 YALAWSSADPWIFASLSYDGR 354 (370)
T ss_pred EEEeeccCCCeeEEEeccCce
Confidence 9999966 6777889999984
No 151
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=7.7e-20 Score=147.51 Aligned_cols=206 Identities=17% Similarity=0.244 Sum_probs=160.3
Q ss_pred CcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEEEECCCCc----------eeEEE--e----cCCceeEEEEec--Cc
Q 015650 127 GGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSR----------CIGEL--S----FRSEVRSVKLRR--DR 187 (403)
Q Consensus 127 ~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~~~----------~~~~~--~----~~~~i~~~~~~~--~~ 187 (403)
.|...|.++...+ .+.++++|+.| |.|.+||++... .+..+ + |...|..+.|-| .|
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgad-----gsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGAD-----GSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred cCCCccceeeeccccceEEeecCCC-----ccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence 3556666666654 58899999999 999999987542 11111 1 667899999998 34
Q ss_pred eEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC-eEEEEeeCCccCeEEEEEccCCce-eEEeecCCceEE
Q 015650 188 IIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIAC 263 (403)
Q Consensus 188 ~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~ 263 (403)
.+.. .|.++++||.++.+....|+. .+.++.-+++|-.. +.+++ +|..+-.|++-|+..+.. ..+.+|.+.|.+
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA-~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIA-AGTRDVQVRLCDIASGSFSHTLSGHRDGVLA 193 (397)
T ss_pred eeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEE-EecCCCcEEEEeccCCcceeeeccccCceEE
Confidence 5544 699999999999888777753 56677888888665 44444 577899999999999765 568899999999
Q ss_pred EEEcCCCCE-EEEEeCCCcEEEEEEcCCC-cEEEEEe------------cCCCcccEEEEEeCCCCCEEEEEeCCCcEEE
Q 015650 264 FALTQDGQL-LATSSTKGTLVRIFNTLDG-TLLQEVR------------RGADRAEIYSLAFSSNAQWLAVSSDKGTVHV 329 (403)
Q Consensus 264 ~~~sp~g~~-l~s~~~dg~~i~iwd~~~~-~~~~~~~------------~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~i 329 (403)
+.|+|...+ |++|+.||. |++||++.. .+...+. ...|.+.|++++|+.|+.++++++.|..+++
T Consensus 194 V~Wsp~~e~vLatgsaDg~-irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGA-IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred EEeccCceeEEEecCCCce-EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 999997765 589999999 999999754 3333332 2346788999999999999999999999999
Q ss_pred EEeecCCCCCC
Q 015650 330 FNLKVNSGSAR 340 (403)
Q Consensus 330 wd~~~~~~~~~ 340 (403)
|+..++++...
T Consensus 273 wn~~~G~ntl~ 283 (397)
T KOG4283|consen 273 WNMESGRNTLR 283 (397)
T ss_pred eecccCccccc
Confidence 99999986443
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=8.2e-21 Score=178.64 Aligned_cols=245 Identities=15% Similarity=0.215 Sum_probs=194.8
Q ss_pred CCCCeEEEEEcCCCCE----EEEEcCCc-EEEEEcCCC----eeEEEEecccCcceeEEEEeeeCCeE-EEeeCCCCCCC
Q 015650 84 PPPTLLHISFNQDHGC----FAAGTDHG-FRIYNCDPF----REIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQY 153 (403)
Q Consensus 84 ~~~~i~~i~~s~d~~~----l~~~~~~~-i~iw~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~ 153 (403)
-..+-+.++|.+.|.. ||.|.++| |.+|+.... +.....++. .|...|..+.|++... .+++|+.+
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~--- 138 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADD--- 138 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCC---
Confidence 3456788999988765 77777666 999997642 222223444 6899999999999655 99999999
Q ss_pred CCceEEEEECCCCceeEEEe---cCCceeEEEEecCce-EEE---ecCeEEEEEcCCceeeeEeeccCC--CceeEEEee
Q 015650 154 PLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIETIAN--PKGLCAVSQ 224 (403)
Q Consensus 154 ~~~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~ 224 (403)
|.|.|||+.+-+.-..+. ..+.|.+++|+..-. +++ .+|++.|||++..+.+-.+..+.. .+..++|+|
T Consensus 139 --geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP 216 (1049)
T KOG0307|consen 139 --GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHP 216 (1049)
T ss_pred --CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCC
Confidence 999999998755444442 567899999998654 444 477999999998877777655444 356899999
Q ss_pred CCCeEEEEeeCC-ccCeEEEEEccC--CceeEEeecCCceEEEEEcCCC-CEEEEEeCCCcEEEEEEcCCCcEEEEEecC
Q 015650 225 GVGSLVLVCPGL-QKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRG 300 (403)
Q Consensus 225 ~~~~~~~~~~g~-~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~ 300 (403)
+....+++++++ ..-.|.+||+|. ...+.+.+|...|.++.|++.+ ++|++++.|+. |.+|+.++++.+..+..
T Consensus 217 ~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~tgEvl~~~p~- 294 (1049)
T KOG0307|consen 217 DHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNTGEVLGELPA- 294 (1049)
T ss_pred CCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCCCceEeeecCC-
Confidence 987777666442 335799999987 5567788999999999999966 88999999999 99999999999999986
Q ss_pred CCcccEEEEEeCCCCC-EEEEEeCCCcEEEEEeecCCC
Q 015650 301 ADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 301 ~~~~~v~~l~~s~d~~-~l~s~~~dg~v~iwd~~~~~~ 337 (403)
....+..+.|.|... .|++++-||.|.|+.+.....
T Consensus 295 -~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 295 -QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred -CCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence 457899999999776 788899999999999988763
No 153
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=1.4e-19 Score=160.27 Aligned_cols=238 Identities=13% Similarity=0.147 Sum_probs=165.1
Q ss_pred EEEcC---CCCEEEEEcCCc-EEEEEcCCCeeEE----EEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEE
Q 015650 91 ISFNQ---DHGCFAAGTDHG-FRIYNCDPFREIF----RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (403)
Q Consensus 91 i~~s~---d~~~l~~~~~~~-i~iw~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd 162 (403)
..|++ ...+|+.+.+.| |.++|.....-.. .+.. ..|...|.++.|-+....|++.+.| .++++||
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapge~~lVsasGD-----sT~r~Wd 128 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPGESLLVSASGD-----STIRPWD 128 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCCceeEEEccCC-----ceeeeee
Confidence 45543 235678887555 9999975432220 0222 2588999999999988889999888 9999999
Q ss_pred CCCCceeEE--Ee-cCCceeEEEEecCceEEE----ecCeEEEEEcCCce--e-------------------------ee
Q 015650 163 DHQSRCIGE--LS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLK--L-------------------------LH 208 (403)
Q Consensus 163 ~~~~~~~~~--~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~--~-------------------------~~ 208 (403)
+++++++.. +. |...|.+++|.+....++ .||.|.|||++... . +.
T Consensus 129 vk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~ 208 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR 208 (720)
T ss_pred eccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence 999988876 44 999999999999876555 49999999987422 0 00
Q ss_pred EeeccCCCcee---EEEeeCCCeEEEEeeCCccCeEEEEEccCCce---------eEEeec---CCceEEEEEcCCCCEE
Q 015650 209 QIETIANPKGL---CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT---------KFIMAH---DSRIACFALTQDGQLL 273 (403)
Q Consensus 209 ~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~---------~~~~~~---~~~i~~~~~sp~g~~l 273 (403)
....+...+.. +.+..|.. .++++|..|+.|+|||++.... ..+..| ...+.++..+..|.+|
T Consensus 209 k~kA~s~ti~ssvTvv~fkDe~--tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 209 KWKAASNTIFSSVTVVLFKDES--TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred ccccccCceeeeeEEEEEeccc--eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence 01111222222 23333443 4666676799999999997332 112223 3357788888889999
Q ss_pred EEEeCCCcEEEEEEcCCCc--EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650 274 ATSSTKGTLVRIFNTLDGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 274 ~s~~~dg~~i~iwd~~~~~--~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
++.|.|+. |++||+.+.. ++..+.+......-..-..+||+.+|++|+.|...++|.+.+.+.
T Consensus 287 ~AsCtD~s-Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 287 FASCTDNS-IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred EEEecCCc-EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence 99999999 9999997643 333343321112222335789999999999999999999999884
No 154
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.85 E-value=4.9e-20 Score=163.08 Aligned_cols=128 Identities=16% Similarity=0.204 Sum_probs=94.6
Q ss_pred CccccCCCCCCeEEEEEcCC-CCEEEEEc-CCcEEEEEcCCCee-EE---EEecccCcceeEEEEeeeC--CeEEEeeCC
Q 015650 77 AESTSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFRE-IF---RRDFERGGGIGVVEMLFRC--NILALVGGG 148 (403)
Q Consensus 77 ~~~~~~~~~~~i~~i~~s~d-~~~l~~~~-~~~i~iw~~~~~~~-~~---~~~~~~~~~~~v~~~~~~~--~~~~~~s~~ 148 (403)
...++..|.+.|+.+.|+|- ..+||+++ |..|+||.+..+.. .+ ...+ ++....+-++.|++ |++...++.
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~-g~~~~~vE~l~fHpTaDgil~s~a~ 149 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDV-GGGNVIVECLRFHPTADGILASGAH 149 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceee-cCCceEEEEeecccCcCceEEeccC
Confidence 44678899999999999994 56788888 45599999963322 11 1222 35556777788877 444443333
Q ss_pred CCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEEe---cCeEEEEEcCC-ceeeeEeec
Q 015650 149 PDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFAD-LKLLHQIET 212 (403)
Q Consensus 149 ~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~-~~~~~~~~~ 212 (403)
|.++|||+.+++.+..+. |...|.++.|+.||.+++. |..|+|||.+. ++.++..++
T Consensus 150 -------g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~ 211 (1012)
T KOG1445|consen 150 -------GSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEG 211 (1012)
T ss_pred -------ceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccc
Confidence 899999999999999988 9999999999999999993 77899999775 344443333
No 155
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=8.6e-20 Score=160.40 Aligned_cols=235 Identities=19% Similarity=0.218 Sum_probs=187.6
Q ss_pred cCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceE--EE--ecCeE-----
Q 015650 126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRII--VV--LEQKI----- 196 (403)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~--~d~~i----- 196 (403)
.+|...+.++...+.+.++++|+.| |+|+||.+.+|.+++++...+.|.+|+|+|.+.. ++ .+..+
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdD-----GtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDD-----GTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCC-----CcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 3899999999999999999999999 9999999999999999999999999999997532 22 22223
Q ss_pred ----------------------------EEEEcCCce----eeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEE
Q 015650 197 ----------------------------FVYNFADLK----LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE 244 (403)
Q Consensus 197 ----------------------------~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~ 244 (403)
..|.-...+ -+...-.|...+..+.|+..|+.+..++..+....|.|+
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 334322100 012233456677888999999977776655566789999
Q ss_pred EccCCcee-EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC
Q 015650 245 HYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD 323 (403)
Q Consensus 245 d~~~~~~~-~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~ 323 (403)
.+.....+ .+....+.|.++.|+|...+|+.++... |+|||+...++++++.. ....|..++.+|.|..|+.++.
T Consensus 552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~--vRiYdL~kqelvKkL~t--g~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRS--VRIYDLSKQELVKKLLT--GSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred ecccccccCchhhcCCceeEEEecCCCceEEEEeccc--eEEEehhHHHHHHHHhc--CCeeeeeeeecCCCCeEEEecC
Confidence 98875543 3445678899999999999999888764 99999998888777765 3468999999999999999999
Q ss_pred CCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 324 KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 324 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
|+.+..||++-... .+..++.|+..+..|+|++.-..+++|+.||+
T Consensus 628 d~k~~WfDldlssk----------------------------------Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgt 673 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSK----------------------------------PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT 673 (733)
T ss_pred CCeeEEEEcccCcc----------------------------------hhHHhhhhhhhhhhhhhccccceeeeecCCCc
Confidence 99999999987652 14447888899999999999999999999986
No 156
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=4.1e-18 Score=138.43 Aligned_cols=256 Identities=16% Similarity=0.237 Sum_probs=184.4
Q ss_pred ecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC----ceeEEEe-cCCceeEEEEecC--ceEEE---e
Q 015650 123 DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS-FRSEVRSVKLRRD--RIIVV---L 192 (403)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~----~~~~~~~-~~~~i~~~~~~~~--~~~~~---~ 192 (403)
.+..+|..-|.++.|..-|..+++++.| ++|+|||.+.. .+....+ |.+.|..+.|.+- |..++ .
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsD-----q~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~ 81 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSD-----QTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY 81 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCC-----CcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEec
Confidence 3445788889999999999999999999 99999996543 3444455 9999999999763 77777 5
Q ss_pred cCeEEEEEcCC---------ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC-ce------eEE--
Q 015650 193 EQKIFVYNFAD---------LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RT------KFI-- 254 (403)
Q Consensus 193 d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~-~~------~~~-- 254 (403)
|+++.||.-.. .....++......+..+.|.|..-++.+++.+ .||.++||+.... .+ ..+
T Consensus 82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~-aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 82 DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS-ADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEec-cCcEEEEEecCCccccccchhhhhhhh
Confidence 99999998521 12344556667788999999999999888866 8999999986551 11 111
Q ss_pred -----eecCCceEEEEEcC---CCCEEEEEeCC-----CcEEEEEEcCCC--c--EEEEEecCCCcccEEEEEeCCCC--
Q 015650 255 -----MAHDSRIACFALTQ---DGQLLATSSTK-----GTLVRIFNTLDG--T--LLQEVRRGADRAEIYSLAFSSNA-- 315 (403)
Q Consensus 255 -----~~~~~~i~~~~~sp---~g~~l~s~~~d-----g~~i~iwd~~~~--~--~~~~~~~~~~~~~v~~l~~s~d~-- 315 (403)
..+.....|+.|+| ...+||.|+.+ +. ++||....+ + .+.++. .|..+|++|+|.|+-
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~-~~Iye~~e~~rKw~kva~L~--d~~dpI~di~wAPn~Gr 237 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNK-VKIYEYNENGRKWLKVAELP--DHTDPIRDISWAPNIGR 237 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccc-eEEEEecCCcceeeeehhcC--CCCCcceeeeeccccCC
Confidence 13667788999997 34678888876 35 888876543 2 233444 478899999999953
Q ss_pred --CEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCC
Q 015650 316 --QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN 393 (403)
Q Consensus 316 --~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~ 393 (403)
.+||+++.|| |+||++.........+.. .+++ .+.++ ...-+.++..|.+.|..+.|.--|.
T Consensus 238 ~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~-----~~~~--------~~~~l--~v~~vs~~~~H~~~VWrv~wNmtGt 301 (361)
T KOG2445|consen 238 SYHLLAVATKDG-VRIFKVKVARSAIEEEEV-----LAPD--------LMTDL--PVEKVSELDDHNGEVWRVRWNMTGT 301 (361)
T ss_pred ceeeEEEeecCc-EEEEEEeeccchhhhhcc-----cCCC--------Ccccc--ceEEeeeccCCCCceEEEEEeeeee
Confidence 4799999999 999999865421111000 0000 00000 1122455777888999999999999
Q ss_pred EEEEEccCCC
Q 015650 394 TVVILGMDGR 403 (403)
Q Consensus 394 ~l~~~~~dG~ 403 (403)
.|++.|.||.
T Consensus 302 iLsStGdDG~ 311 (361)
T KOG2445|consen 302 ILSSTGDDGC 311 (361)
T ss_pred EEeecCCCce
Confidence 9999999994
No 157
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=7.4e-20 Score=165.33 Aligned_cols=237 Identities=14% Similarity=0.164 Sum_probs=179.6
Q ss_pred eEEEEEcC-CCCEEEEEcCCc-EEEEEcCCC-eeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCceEEEEEC
Q 015650 88 LLHISFNQ-DHGCFAAGTDHG-FRIYNCDPF-REIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDD 163 (403)
Q Consensus 88 i~~i~~s~-d~~~l~~~~~~~-i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~i~iwd~ 163 (403)
+..+.|.. +..+||+++.+| |.+||+... .......|. .|...+..+.|+.- -.+|++|+.| |.|++||+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQD-----g~vK~~Dl 163 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQD-----GTVKCWDL 163 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhh-hhccceeeeeeccCCccEEEecCCC-----ceEEEEee
Confidence 44567753 457899998777 999999752 122224454 79999999999774 5678999999 99999999
Q ss_pred CCCceeEEEe-cCCceeEEEEecC-ceEEE---ecCeEEEEEcCCc-eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650 164 HQSRCIGELS-FRSEVRSVKLRRD-RIIVV---LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (403)
Q Consensus 164 ~~~~~~~~~~-~~~~i~~~~~~~~-~~~~~---~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 237 (403)
+..+...++. ..+.|++|.|+|. +..++ -.|.+.+||++.. ++...+..|.+++.++.|+|+. .++|++| .
T Consensus 164 R~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr--~~lATGG-R 240 (839)
T KOG0269|consen 164 RSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR--EWLATGG-R 240 (839)
T ss_pred ecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC--ceeeecC-C
Confidence 9998888877 7889999999984 33333 3789999999874 5667788999999999999954 4778755 9
Q ss_pred cCeEEEEEccCCceeE--EeecCCceEEEEEcCCCCE-EEEEeC--CCcEEEEEEcCCCc-EEEEEecCCCcccEEEEEe
Q 015650 238 KGQVRVEHYASKRTKF--IMAHDSRIACFALTQDGQL-LATSST--KGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAF 311 (403)
Q Consensus 238 d~~i~v~d~~~~~~~~--~~~~~~~i~~~~~sp~g~~-l~s~~~--dg~~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~ 311 (403)
|+.|+|||+.+.+... ......++.+++|-|+..+ |++++. |-. |+|||++..- +..++.. |...++.++|
T Consensus 241 DK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dts-V~VWDvrRPYIP~~t~~e--H~~~vt~i~W 317 (839)
T KOG0269|consen 241 DKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTS-VHVWDVRRPYIPYATFLE--HTDSVTGIAW 317 (839)
T ss_pred CccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccce-EEEEeeccccccceeeec--cCccccceec
Confidence 9999999998744322 2234568999999997665 555543 556 9999997643 3445554 7789999999
Q ss_pred CC-CCCEEEEEeCCCcEEEEEeecCC
Q 015650 312 SS-NAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 312 s~-d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
.. |-..|.+++.||+|..-.+++..
T Consensus 318 ~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 318 DSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred cCCCceeeEeecCccHHHHhhhhccc
Confidence 75 44578899999998776666554
No 158
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=9.5e-19 Score=142.53 Aligned_cols=193 Identities=13% Similarity=0.150 Sum_probs=159.2
Q ss_pred EEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceee
Q 015650 132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLL 207 (403)
Q Consensus 132 v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~ 207 (403)
..++.|++.|.+++.|..+ |.|.|||+.+...-+.+. |-.+|.+++|++||+.++ .|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~n-----G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCAN-----GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccC-----CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence 7889999999999999999 999999999998888888 999999999999999988 4899999999999999
Q ss_pred eEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeec-----CCceEEEEEcCCCCEEEEEeCCCcE
Q 015650 208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH-----DSRIACFALTQDGQLLATSSTKGTL 282 (403)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~-----~~~i~~~~~sp~g~~l~s~~~dg~~ 282 (403)
+.+. ...++..+.|+|...+..+++.- +..-.+.++.......+... .....+..|.+.|+++++|...|.
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~--~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk- 176 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIM--EESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK- 176 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEe--cCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce-
Confidence 8885 46789999999998888888733 33344445544332222211 112233468999999999999999
Q ss_pred EEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650 283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (403)
Q Consensus 283 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~ 334 (403)
+.++|..+.+++..++.. ....|..+.++..|+.|+.-+.|..|+.|+++.
T Consensus 177 llv~~a~t~e~vas~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 177 LLVYDAETLECVASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred EEEEecchheeeeeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 999999999999988853 236799999999999999999999999999874
No 159
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=5.8e-17 Score=144.70 Aligned_cols=255 Identities=11% Similarity=0.112 Sum_probs=165.0
Q ss_pred EcCCcEEEEEcCC-CeeEEEEecccCcceeEEEEeeeCCeEEEeeC-CCCCCCCCceEEEEECC-CCce--eEEEecCCc
Q 015650 103 GTDHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGG-GPDPQYPLNKVMIWDDH-QSRC--IGELSFRSE 177 (403)
Q Consensus 103 ~~~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~-~~d~~~~~~~i~iwd~~-~~~~--~~~~~~~~~ 177 (403)
+.+++|++|++.+ ++......+. .......+.+++++..++.+ ..+ +.|.+|++. +++. +........
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~-----~~i~~~~~~~~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGVRPE-----FRVLSYRIADDGALTFAAESPLPGS 81 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEECCC-----CcEEEEEECCCCceEEeeeecCCCC
Confidence 3467799999964 3333334454 33456677888887765443 344 889999986 3432 223334456
Q ss_pred eeEEEEecCceEEE----ecCeEEEEEcCC-ce---eeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-
Q 015650 178 VRSVKLRRDRIIVV----LEQKIFVYNFAD-LK---LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS- 248 (403)
Q Consensus 178 i~~~~~~~~~~~~~----~d~~i~i~d~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~- 248 (403)
...++++|++++++ .++.|.+|++.+ +. .+..+.. ......++++|+++.++++. ..++.|.+||++.
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~--~~~~~v~v~d~~~~ 158 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPC--LKEDRIRLFTLSDD 158 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEee--CCCCEEEEEEECCC
Confidence 77899999998777 378999999964 32 2222222 22345678899888765554 5678999999976
Q ss_pred CceeE-----Ee-ecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCC--Cc--EEEEEecCC----CcccEEEEEeCC
Q 015650 249 KRTKF-----IM-AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLD--GT--LLQEVRRGA----DRAEIYSLAFSS 313 (403)
Q Consensus 249 ~~~~~-----~~-~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~--~~--~~~~~~~~~----~~~~v~~l~~s~ 313 (403)
+.+.. .. ........++|+|+|++|++++. ++. |.+||+.. ++ .+..+.... +......+.|+|
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSS-VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCE-EEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 32211 11 12344678999999999988876 677 99999973 32 333333210 112234689999
Q ss_pred CCCEEEEEe-CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCC
Q 015650 314 NAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK 392 (403)
Q Consensus 314 d~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~ 392 (403)
+|++|+++. .++.|.+|+++......++ +..... ......++|+|||
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~~~~~~~-------------------------------~~~~~~-~~~p~~~~~~~dg 285 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSEDGSVLSF-------------------------------EGHQPT-ETQPRGFNIDHSG 285 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCCCCeEEE-------------------------------eEEEec-cccCCceEECCCC
Confidence 999999885 4789999999865421100 111111 2345578999999
Q ss_pred CEEEEEcc
Q 015650 393 NTVVILGM 400 (403)
Q Consensus 393 ~~l~~~~~ 400 (403)
++|++++.
T Consensus 286 ~~l~va~~ 293 (330)
T PRK11028 286 KYLIAAGQ 293 (330)
T ss_pred CEEEEEEc
Confidence 99998875
No 160
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.82 E-value=4.3e-19 Score=141.08 Aligned_cols=276 Identities=12% Similarity=0.150 Sum_probs=186.0
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (403)
-.+++|.+.|+++.|..+++ |..|...| |.+|.+.+........+ .+...|+.+..-++ ..+.+-++| ..
T Consensus 8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~--~g~~~it~lq~~p~-d~l~tqgRd-----~~ 78 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL--FGRLFITNLQSIPN-DSLDTQGRD-----PL 78 (323)
T ss_pred eEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh--hccceeeceeecCC-cchhhcCCC-----ce
Confidence 45668999999999988776 66677666 99999988777644333 47778888887777 567888888 99
Q ss_pred EEEEECCCCceeEEEecCCceeEEEEe-----cCce----EEEe--cC--eEEEEEcCCceeeeEee----ccCCCceeE
Q 015650 158 VMIWDDHQSRCIGELSFRSEVRSVKLR-----RDRI----IVVL--EQ--KIFVYNFADLKLLHQIE----TIANPKGLC 220 (403)
Q Consensus 158 i~iwd~~~~~~~~~~~~~~~i~~~~~~-----~~~~----~~~~--d~--~i~i~d~~~~~~~~~~~----~~~~~~~~~ 220 (403)
+.+|++.-+..+..- .-.++++.|. ++.+ .++. .+ .+.+-|......+...+ ...+.+.+.
T Consensus 79 L~lw~ia~s~~i~i~--Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 79 LILWTIAYSAFISIH--SIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred EEEEEccCcceEEEe--eeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence 999998775543322 2233333332 2211 1221 11 12222322211121111 112233333
Q ss_pred EEeeCCCeEEEEeeCCccCeEEEEEccCCc-----------eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 015650 221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKR-----------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (403)
Q Consensus 221 ~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-----------~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~ 289 (403)
.+.......+++.+|.++|.+.+||+..+. ......|..++.++.|.+.-..=++|+.+.. +..|++.
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk-l~~~Sl~ 235 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK-LVMYSLN 235 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc-ceeeeec
Confidence 333333344455568899999999998842 2234568999999999875555567787777 8899876
Q ss_pred CC--cE--EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccc
Q 015650 290 DG--TL--LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPK 365 (403)
Q Consensus 290 ~~--~~--~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (403)
.. .+ ..++.. ..-.|..+.+.||++.+|+++.|+.|+||..++..+
T Consensus 236 ~s~gslq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p---------------------------- 285 (323)
T KOG0322|consen 236 HSTGSLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP---------------------------- 285 (323)
T ss_pred cccCcccccceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEeccCCc----------------------------
Confidence 32 22 112221 224688999999999999999999999999999985
Q ss_pred eeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 366 YFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
++.++.|.+.++++||+||.+.+|.++.|++
T Consensus 286 -------LAVLkyHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 286 -------LAVLKYHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred -------hhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence 3446788899999999999999999999974
No 161
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.82 E-value=9.5e-19 Score=155.01 Aligned_cols=248 Identities=14% Similarity=0.126 Sum_probs=170.2
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCc
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLN 156 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~ 156 (403)
.....|.+.|..+.|.|....|++++ |.++++||++..+..-...+. +|...+.+++|.+. ...+++|++| |
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~-GH~~SvkS~cf~~~n~~vF~tGgRD-----g 167 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL-GHTGSVKSECFMPTNPAVFCTGGRD-----G 167 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec-ccccccchhhhccCCCcceeeccCC-----C
Confidence 55677999999999999556677665 667999999987766544454 89999999999884 5678899999 9
Q ss_pred eEEEEECCCCc--------------------eeE-------EEe-cCCceeE---EEEecCceEEE----ecCeEEEEEc
Q 015650 157 KVMIWDDHQSR--------------------CIG-------ELS-FRSEVRS---VKLRRDRIIVV----LEQKIFVYNF 201 (403)
Q Consensus 157 ~i~iwd~~~~~--------------------~~~-------~~~-~~~~i~~---~~~~~~~~~~~----~d~~i~i~d~ 201 (403)
.|.|||++-.. ... .-. +...|.+ +.+..|...|+ .|+.|++||+
T Consensus 168 ~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDL 247 (720)
T KOG0321|consen 168 EILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDL 247 (720)
T ss_pred cEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEee
Confidence 99999974321 000 001 2333444 55556666666 3999999999
Q ss_pred CCceeeeE--------eecc-CCCceeEEE--eeCCCeEEEEeeCCccCeEEEEEccCCceeE---EeecCCc--eEEEE
Q 015650 202 ADLKLLHQ--------IETI-ANPKGLCAV--SQGVGSLVLVCPGLQKGQVRVEHYASKRTKF---IMAHDSR--IACFA 265 (403)
Q Consensus 202 ~~~~~~~~--------~~~~-~~~~~~~~~--~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~---~~~~~~~--i~~~~ 265 (403)
++...... +..+ ...+..+.+ ...|..++.. +.|+.|++|++....+.. +.++... -..-.
T Consensus 248 Rk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As---CtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~ 324 (720)
T KOG0321|consen 248 RKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS---CTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSE 324 (720)
T ss_pred cccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE---ecCCcEEEEeccccCcCchhhccCcccceeeeeee
Confidence 97533221 1112 112333444 4444554433 369999999998844333 2222211 11224
Q ss_pred EcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCC-EEEEEeCCCcEEEEEeecCCC
Q 015650 266 LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 266 ~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~~~dg~v~iwd~~~~~~ 337 (403)
.+||+.+|++|+.|.. .++|.+.+.+.-..+..+ |.-.|++++|.|... -++++++|..++||++..+-+
T Consensus 325 lSpd~~~l~SgSsd~~-ayiw~vs~~e~~~~~l~G-ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 325 LSPDDCSLLSGSSDEQ-AYIWVVSSPEAPPALLLG-HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred cCCCCceEeccCCCcc-eeeeeecCccCChhhhhC-cceEEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence 6899999999999999 999999887654444433 778999999988433 467779999999999966544
No 162
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=1.1e-18 Score=140.54 Aligned_cols=249 Identities=14% Similarity=0.129 Sum_probs=183.6
Q ss_pred CCCccccCCCCCCeEEEEEcCCC-CEEEEEcC----C----cEEEEEcCCCeeE-------EEEecccCcceeEEEEeee
Q 015650 75 SPAESTSSSPPPTLLHISFNQDH-GCFAAGTD----H----GFRIYNCDPFREI-------FRRDFERGGGIGVVEMLFR 138 (403)
Q Consensus 75 ~~~~~~~~~~~~~i~~i~~s~d~-~~l~~~~~----~----~i~iw~~~~~~~~-------~~~~~~~~~~~~v~~~~~~ 138 (403)
....+.+..|.+.|..++-+|-. ++|+++.. . ++.||.+...... ....+...+-..+.++.|.
T Consensus 53 ~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~ 132 (370)
T KOG1007|consen 53 ELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWE 132 (370)
T ss_pred hhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEc
Confidence 34457788899999999999955 56666542 2 2789998532211 1122322344588999999
Q ss_pred CCeEEEeeCCCCCCCCCceEEEEECCCCce-eEEEe------cCCceeEEEEec--CceEEE--ecCeEEEEEcCCceee
Q 015650 139 CNILALVGGGPDPQYPLNKVMIWDDHQSRC-IGELS------FRSEVRSVKLRR--DRIIVV--LEQKIFVYNFADLKLL 207 (403)
Q Consensus 139 ~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~-~~~~~------~~~~i~~~~~~~--~~~~~~--~d~~i~i~d~~~~~~~ 207 (403)
|++..+++-.+ ..|.+|++..+.. +..+. +....++-+|+| |+..++ .|+++..||+++.++.
T Consensus 133 Pns~klasm~d------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 133 PNSDKLASMDD------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKN 206 (370)
T ss_pred CCCCeeEEecc------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhh
Confidence 99999888874 7999999988765 44443 355677888988 677666 6999999999998777
Q ss_pred eEe-eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeEEeecCCceEEEEEcCC-CCEEEEEeCCCcEE
Q 015650 208 HQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLV 283 (403)
Q Consensus 208 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~-g~~l~s~~~dg~~i 283 (403)
..+ ..|...+..+.|+|+... +++++| .||.|++||.+. ..++.+.+|..++.++.|+|. ..+|++|+.|.. |
T Consensus 207 ~sI~dAHgq~vrdlDfNpnkq~-~lvt~g-DdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V 283 (370)
T KOG1007|consen 207 NSIEDAHGQRVRDLDFNPNKQH-ILVTCG-DDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-V 283 (370)
T ss_pred cchhhhhcceeeeccCCCCceE-EEEEcC-CCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce-e
Confidence 666 457777888888887654 455545 899999999997 456778899999999999994 567789999999 9
Q ss_pred EEEEcCCC-----------------------------cEEEEEecCCCcccEEEEEeCCCCC-EEEEEeCCCcEEEEEee
Q 015650 284 RIFNTLDG-----------------------------TLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLK 333 (403)
Q Consensus 284 ~iwd~~~~-----------------------------~~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~~~dg~v~iwd~~ 333 (403)
.+|-..+- ..+.++.. |+..|.+++||.-.. ++|+-+.||.+.|=.+.
T Consensus 284 ~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 284 NLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred EEEeccccccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 99965321 01223443 778999999997655 56788999999886665
Q ss_pred c
Q 015650 334 V 334 (403)
Q Consensus 334 ~ 334 (403)
.
T Consensus 362 r 362 (370)
T KOG1007|consen 362 R 362 (370)
T ss_pred h
Confidence 3
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=6e-19 Score=151.93 Aligned_cols=214 Identities=11% Similarity=0.181 Sum_probs=172.9
Q ss_pred EEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650 89 LHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (403)
Q Consensus 89 ~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~ 167 (403)
.|++......++++|+-++ |+|||+.. +.+.+.+. +|...|+.+.++....++++++.. |.|.|..+.++.
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~--kl~hr~lk-dh~stvt~v~YN~~DeyiAsvs~g-----Gdiiih~~~t~~ 154 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRA--KLIHRFLK-DHQSTVTYVDYNNTDEYIASVSDG-----GDIIIHGTKTKQ 154 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHH--HHHhhhcc-CCcceeEEEEecCCcceeEEeccC-----CcEEEEecccCc
Confidence 4444444558888888555 99999973 33335665 899999999999999999999988 999999999999
Q ss_pred eeEEEec--CCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEe-eccCCCceeEEEeeCCCeEEEEeeCCccCe
Q 015650 168 CIGELSF--RSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240 (403)
Q Consensus 168 ~~~~~~~--~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 240 (403)
....|.+ ...|.-+.|++..+.+. .+|.|.+||.....++..+ +.|..+...+||+|....++ ++.| .|..
T Consensus 155 ~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~-vsVG-~Dkk 232 (673)
T KOG4378|consen 155 KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL-VSVG-YDKK 232 (673)
T ss_pred cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE-EEec-ccce
Confidence 8888884 45677899999877766 3899999999876666554 67888999999999887654 4446 8999
Q ss_pred EEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc-EEEEEecCCCcccEEEEEeCCCC
Q 015650 241 VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAFSSNA 315 (403)
Q Consensus 241 i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~s~d~ 315 (403)
|.+||.+.+..........+...++|+++|.+|++|+..|. |..||++..+ ++..+.. |...|++++|-+..
T Consensus 233 i~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~-~i~YD~R~~k~Pv~v~sa--h~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 233 INIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGE-LIAYDMRSTKAPVAVRSA--HDASVTRVAFQPSP 305 (673)
T ss_pred EEEeecccccccceeeecCCcceeeecCCceEEEeecCCce-EEEEecccCCCCceEeee--cccceeEEEeeecc
Confidence 99999998766555556778999999999999999999999 9999998755 4545543 77889999998764
No 164
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=1.9e-18 Score=147.47 Aligned_cols=198 Identities=16% Similarity=0.135 Sum_probs=147.9
Q ss_pred CcceeEEEEeeeCC--eEEEeeCCCCCCCCCceEEEEECCCCc----eeEEEe-cCCceeEEEEecCc--eEEE--ecCe
Q 015650 127 GGGIGVVEMLFRCN--ILALVGGGPDPQYPLNKVMIWDDHQSR----CIGELS-FRSEVRSVKLRRDR--IIVV--LEQK 195 (403)
Q Consensus 127 ~~~~~v~~~~~~~~--~~~~~s~~~d~~~~~~~i~iwd~~~~~----~~~~~~-~~~~i~~~~~~~~~--~~~~--~d~~ 195 (403)
-+...|.++.|+|. ...++.|+.. |+|-+||+.+.+ -+..+. |..+|.++.|+|.+ +++. .||+
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~-----G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKG-----GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCC-----CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 36678999999885 3577788877 999999995332 233444 89999999999953 3333 6999
Q ss_pred EEEEEcCCcee--eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc--eeEEeecCCceEEEEEcCC-C
Q 015650 196 IFVYNFADLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQD-G 270 (403)
Q Consensus 196 i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~--~~~~~~~~~~i~~~~~sp~-g 270 (403)
|++-|++.... +.........+..+.++.+....+++ ..-|...+||++... ...+.-|...|.+|+++|. .
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~---~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFG---DNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP 335 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEe---ecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence 99999987532 33333233445556666666654443 355699999999843 4556778889999999995 4
Q ss_pred CEEEEEeCCCcEEEEEEcCCCcEEEE--EecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650 271 QLLATSSTKGTLVRIFNTLDGTLLQE--VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (403)
Q Consensus 271 ~~l~s~~~dg~~i~iwd~~~~~~~~~--~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~ 333 (403)
.+||+++.|++ ++|||++....... +..-.|...|.+..|||++..|++.+.|..|+|||..
T Consensus 336 ~~laT~s~D~T-~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 336 WFLATASLDQT-AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred hheeecccCcc-eeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 67899999999 99999986432221 3333388899999999999889999999999999994
No 165
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=8e-18 Score=141.60 Aligned_cols=252 Identities=16% Similarity=0.155 Sum_probs=180.4
Q ss_pred CCccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcC--------C------CeeEEEEecccCcceeEEEEeeeCC
Q 015650 76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCD--------P------FREIFRRDFERGGGIGVVEMLFRCN 140 (403)
Q Consensus 76 ~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~--------~------~~~~~~~~~~~~~~~~v~~~~~~~~ 140 (403)
.-...+..|..+|+++.|+|+|.+||+|+|++ |.+|... + ...+..+.+. +|...+..++|+++
T Consensus 56 ~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~Ws~d 134 (434)
T KOG1009|consen 56 EYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAWSPD 134 (434)
T ss_pred EEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhccCC
Confidence 33467889999999999999999999999888 9999865 2 1223335554 79999999999999
Q ss_pred eEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEee-----
Q 015650 141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIE----- 211 (403)
Q Consensus 141 ~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~----- 211 (403)
+.++++++-| +.+++||+..|+....+. |...+..++|.|-+.+++ .|...+.+.+...+.++...
T Consensus 135 ~~~l~s~s~d-----ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~ 209 (434)
T KOG1009|consen 135 SNFLVSGSVD-----NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMP 209 (434)
T ss_pred Cceeeeeecc-----ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEee
Confidence 9999999999 999999999999999988 999999999999999888 46656666654432222111
Q ss_pred ---ccC---------------CCceeEEEeeCCCeEEEEe-eCC--c-----cCeEEEEEccC--CceeEEeecCCceEE
Q 015650 212 ---TIA---------------NPKGLCAVSQGVGSLVLVC-PGL--Q-----KGQVRVEHYAS--KRTKFIMAHDSRIAC 263 (403)
Q Consensus 212 ---~~~---------------~~~~~~~~~~~~~~~~~~~-~g~--~-----d~~i~v~d~~~--~~~~~~~~~~~~i~~ 263 (403)
.+. .-..-++|+|++.- +++ +|. . -+..++|+-.. .....+..-..+...
T Consensus 210 ~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l--lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~la 287 (434)
T KOG1009|consen 210 AKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL--LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALA 287 (434)
T ss_pred ecccCCCCcceeeeeecCchhhhhhhcccCCCCcE--EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEE
Confidence 000 01123577777653 332 111 0 12233443322 222333344444555
Q ss_pred EEEcC------------------CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 015650 264 FALTQ------------------DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG 325 (403)
Q Consensus 264 ~~~sp------------------~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg 325 (403)
+.|+| -+-.+|.++.+. |+|||.++.+++.....- |-..|++++|++||..|+..+.||
T Consensus 288 vr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~s--vyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DG 364 (434)
T KOG1009|consen 288 VRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNS--VYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDG 364 (434)
T ss_pred EEeeeeEEEeccccccccccccccceEEEEeecce--EEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCC
Confidence 55544 234566677664 999999998888777653 778999999999999999999999
Q ss_pred cEEEEEeecCCCC
Q 015650 326 TVHVFNLKVNSGS 338 (403)
Q Consensus 326 ~v~iwd~~~~~~~ 338 (403)
..-+--++..+..
T Consensus 365 yCS~vtfe~~elg 377 (434)
T KOG1009|consen 365 FCSLVTFEPWELG 377 (434)
T ss_pred ceEEEEEcchhcc
Confidence 9999888877653
No 166
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=1.6e-18 Score=150.79 Aligned_cols=254 Identities=14% Similarity=0.180 Sum_probs=182.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCcEEEEE-cCCCeeEEEEecccCcceeEEEEee-------eCCeEEEeeCCCCCCCC
Q 015650 83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYN-CDPFREIFRRDFERGGGIGVVEMLF-------RCNILALVGGGPDPQYP 154 (403)
Q Consensus 83 ~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~-~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~~s~~~d~~~~ 154 (403)
.|...|.|+.|+.....+.+++|+.+.+|. +.+..... ..+. ...-.+.+.. ......++.++.|
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~-~~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~D---- 84 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEV-AKLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSND---- 84 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhh-hhCC--cccCCccccccccccCCCCCcceEEEEcCC----
Confidence 466777899999998899888888865554 43222211 1111 1110111111 0122334444555
Q ss_pred CceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650 155 LNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (403)
Q Consensus 155 ~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (403)
|.+.|.+ +.++..+.+. |.+.+.+-.|+|||.-++ .||.|++|. ++|-+..++-....++++++|.|+.+..+
T Consensus 85 -Gkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl 161 (737)
T KOG1524|consen 85 -GRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIV 161 (737)
T ss_pred -ceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceE
Confidence 8998887 6677667777 999999999999998777 599999999 56665555656678899999999988765
Q ss_pred EEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEE
Q 015650 231 LVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL 309 (403)
Q Consensus 231 ~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l 309 (403)
+ | ..+.+.+-.+.. .++...++|.+-|.++.|++...++++|++|-. .+|||. -|..+..-. .|+.+|+++
T Consensus 162 ~-c---~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~-~G~~Lf~S~--~~ey~ITSv 233 (737)
T KOG1524|consen 162 F-C---QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDA-QGANLFTSA--AEEYAITSV 233 (737)
T ss_pred E-e---cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee-EEeecc-cCcccccCC--hhccceeee
Confidence 4 3 336677766654 456778999999999999999999999999999 999995 466554443 478899999
Q ss_pred EeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEec
Q 015650 310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG 389 (403)
Q Consensus 310 ~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs 389 (403)
+|.|+ +.++.++.. +++ ++++. .+++..++||
T Consensus 234 a~npd-~~~~v~S~n-t~R---~~~p~-------------------------------------------~GSifnlsWS 265 (737)
T KOG1524|consen 234 AFNPE-KDYLLWSYN-TAR---FSSPR-------------------------------------------VGSIFNLSWS 265 (737)
T ss_pred eeccc-cceeeeeee-eee---ecCCC-------------------------------------------ccceEEEEEc
Confidence 99999 666666533 344 33332 3567789999
Q ss_pred cCCCEEEEEccCC
Q 015650 390 HQKNTVVILGMDG 402 (403)
Q Consensus 390 ~d~~~l~~~~~dG 402 (403)
+||..++.|+..|
T Consensus 266 ~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 266 ADGTQATCGTSTG 278 (737)
T ss_pred CCCceeeccccCc
Confidence 9999999999887
No 167
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.3e-17 Score=138.38 Aligned_cols=300 Identities=14% Similarity=0.136 Sum_probs=207.6
Q ss_pred CCccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCC------eeEEEEecccCcceeEEEEeeeCCeEEEeeCC
Q 015650 76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF------REIFRRDFERGGGIGVVEMLFRCNILALVGGG 148 (403)
Q Consensus 76 ~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~ 148 (403)
.-++...+|.+.|++|.|+.++++|++|+|+. ++||+++.. +.+ ......|...|.++.|.....++++|+
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI--~~~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI--GVMEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCc--eeccCccccceEEEEEccCCeeEecCC
Confidence 34466789999999999999999999999766 999998521 222 222235668999999999999999999
Q ss_pred CCCCCCCceEEEEECCCCceeEEEecC---CceeEEEEecCceEEE---ecCeEEEEEcCCce-eeeE--eeccCCCcee
Q 015650 149 PDPQYPLNKVMIWDDHQSRCIGELSFR---SEVRSVKLRRDRIIVV---LEQKIFVYNFADLK-LLHQ--IETIANPKGL 219 (403)
Q Consensus 149 ~d~~~~~~~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~-~~~~--~~~~~~~~~~ 219 (403)
.+ ++|..-|+++.+.+..+.|. +.|..+..+|....++ -++.|.+||.+... .+.. ..........
T Consensus 125 ~~-----~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t 199 (609)
T KOG4227|consen 125 RW-----GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT 199 (609)
T ss_pred Cc-----ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcccee
Confidence 99 99999999999999888854 4899999999554444 38899999998643 2222 2223445667
Q ss_pred EEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE--------EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC
Q 015650 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF--------IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (403)
Q Consensus 220 ~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~--------~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~ 291 (403)
+.|+|....++++. +..+-+.+||.+...... +......-.++.|+|.|..|.+--.... -.+||+-+.
T Consensus 200 ~~F~P~~P~Li~~~--~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~-P~~~D~~S~ 276 (609)
T KOG4227|consen 200 AEFHPETPALILVN--SETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKC-PLYFDFISQ 276 (609)
T ss_pred eeecCCCceeEEec--cccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCC-CEEeeeecc
Confidence 88888877665543 467889999998744211 1121222356789999999887655444 668888775
Q ss_pred cEE-EEEecCCC-----cccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCC--CCCCCCCCCCCCcccccccccccc
Q 015650 292 TLL-QEVRRGAD-----RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA--RSEPRSTSDPTLPTSSLSFIKGVL 363 (403)
Q Consensus 292 ~~~-~~~~~~~~-----~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 363 (403)
++. ..+. +.. ...+.+++|.-|. .+++|+++-.|++|.+......- +..++.... ..
T Consensus 277 R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~-------------~~ 341 (609)
T KOG4227|consen 277 RCFVLKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEE-------------MP 341 (609)
T ss_pred cceeEecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhh-------------Cc
Confidence 543 2222 111 1256778887554 49999999999999997544210 001111111 00
Q ss_pred cceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccC
Q 015650 364 PKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD 401 (403)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~d 401 (403)
.++| -...+..+++|..-++.|.|+|..+.|++.+..
T Consensus 342 ~~~~-i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE 378 (609)
T KOG4227|consen 342 SEIF-IEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVE 378 (609)
T ss_pred hhhe-ecceeEEEecccccccceeecCCcceEeccchh
Confidence 1111 122355689999999999999999988887653
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=7.4e-16 Score=142.51 Aligned_cols=245 Identities=21% Similarity=0.355 Sum_probs=190.5
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCe-eEEEEecccCcceeEEEEee-eCCeE-EEee-CCCCCCCC
Q 015650 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR-EIFRRDFERGGGIGVVEMLF-RCNIL-ALVG-GGPDPQYP 154 (403)
Q Consensus 80 ~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~-~~~~~-~~~s-~~~d~~~~ 154 (403)
....|...|.++.|.+.+..++.++ ++.+.+|+..... .. ..+...+...+..+.+ .+++. .++. ...+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---- 133 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLI--KSLEGLHDSSVSKLALSSPDGNSILLASSSLD---- 133 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeE--EEEeccCCCceeeEEEECCCcceEEeccCCCC----
Confidence 5678999999999999999999887 6669999987765 22 3333112234555555 55554 4444 4446
Q ss_pred CceEEEEECCC-CceeEEEe-cCCceeEEEEecCceEEE---e-cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650 155 LNKVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVV---L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (403)
Q Consensus 155 ~~~i~iwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~---~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (403)
+.+.+|+... ......+. |...|..+.|++++.+++ . |+.+++|++..++.+..+..|...+..+++++++.
T Consensus 134 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 211 (466)
T COG2319 134 -GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG- 211 (466)
T ss_pred -ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc-
Confidence 8999999988 66666666 899999999999997655 2 88999999998888888888899999999997776
Q ss_pred EEEEeeCCccCeEEEEEccCCcee--EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE-EEEEecCCCccc
Q 015650 229 LVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-LQEVRRGADRAE 305 (403)
Q Consensus 229 ~~~~~~g~~d~~i~v~d~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~-~~~~~~~~~~~~ 305 (403)
.+++ ++..|+.|++||...+... .+..|.... ...|+|++.++++++.|+. +++|++..... +..+. .|...
T Consensus 212 ~~~~-~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~--~~~~~ 286 (466)
T COG2319 212 LLIA-SGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSSSSLLRTLS--GHSSS 286 (466)
T ss_pred eEEE-EecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCCCcEEEEEe--cCCcc
Confidence 2333 2458999999988865544 367777775 4489999989999999999 99999987665 44442 36789
Q ss_pred EEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 306 v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
|.++.|.|++..+++++.|+.+++|++.+...
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 318 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCce
Confidence 99999999999998888889999998877763
No 169
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=4.7e-17 Score=137.06 Aligned_cols=273 Identities=15% Similarity=0.187 Sum_probs=187.6
Q ss_pred CCCCeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCC-------eeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650 84 PPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPF-------REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (403)
Q Consensus 84 ~~~~i~~i~~s~d~~-~l~~~~-~~~i~iw~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~ 154 (403)
...+|..+.|.++.. .|++|+ |..|+||.++.. +..+...|. .|...+..+.|++++..+++++++
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls-~H~~aVN~vRf~p~gelLASg~D~---- 86 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLS-RHTRAVNVVRFSPDGELLASGGDG---- 86 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeeccc-CCcceeEEEEEcCCcCeeeecCCC----
Confidence 346799999998876 889887 666999988422 234445565 799999999999999999999999
Q ss_pred CceEEEEECC--------C-----C---ceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccC
Q 015650 155 LNKVMIWDDH--------Q-----S---RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIA 214 (403)
Q Consensus 155 ~~~i~iwd~~--------~-----~---~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~ 214 (403)
|.|.+|-.. + . ...+.+. |...|..++|++++.+++ .|+.+++||+..|+....+..|.
T Consensus 87 -g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~ 165 (434)
T KOG1009|consen 87 -GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHE 165 (434)
T ss_pred -ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccc
Confidence 999999765 2 1 1122333 889999999999999998 59999999999999999999999
Q ss_pred CCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE------E--------------eecCC----ceEEEEEcCCC
Q 015650 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF------I--------------MAHDS----RIACFALTQDG 270 (403)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~------~--------------~~~~~----~i~~~~~sp~g 270 (403)
+.+..++|.|.+. ++++-+ .|...+.+.+...+... + .-|.. -...++|+|||
T Consensus 166 ~yvqgvawDpl~q--yv~s~s-~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG 242 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQ--YVASKS-SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG 242 (434)
T ss_pred cccceeecchhhh--hhhhhc-cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC
Confidence 9999999988776 444422 45555555544322100 0 01111 23457899999
Q ss_pred CEEEEEeC----CCc----EEEEEEcCCC-cEEEEEecCCCcccEEEEEeCC------------------CCCEEEEEeC
Q 015650 271 QLLATSST----KGT----LVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSS------------------NAQWLAVSSD 323 (403)
Q Consensus 271 ~~l~s~~~----dg~----~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~s~------------------d~~~l~s~~~ 323 (403)
.+|++... .+. ..++|+-... ++...+.. -..+...+.|+| -+-.+|.++
T Consensus 243 ~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt- 319 (434)
T KOG1009|consen 243 SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS--PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT- 319 (434)
T ss_pred cEEEcccceeeeCCceeeceeEeeccccccCceeecCC--CCcceEEEEeeeeEEEeccccccccccccccceEEEEee-
Confidence 99987542 222 0355553322 22222222 123344444443 223455555
Q ss_pred CCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650 324 KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG 402 (403)
Q Consensus 324 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG 402 (403)
...|+|||.++.++. ...--+|-..++.++|++||.+|++.+.||
T Consensus 320 ~~svyvydtq~~~P~----------------------------------~~v~nihy~~iTDiaws~dg~~l~vSS~DG 364 (434)
T KOG1009|consen 320 KNSVYVYDTQTLEPL----------------------------------AVVDNIHYSAITDIAWSDDGSVLLVSSTDG 364 (434)
T ss_pred cceEEEeccccccce----------------------------------EEEeeeeeeeecceeecCCCcEEEEeccCC
Confidence 447999999987751 111245556899999999999999999998
No 170
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=6.9e-17 Score=130.36 Aligned_cols=271 Identities=15% Similarity=0.224 Sum_probs=191.9
Q ss_pred CeEEEEEcC--C-CCEEEEEc-----CCcEEEEEcC--CCeeEEEEecccCcceeEEEEeeeCCeE-----EEeeCCCCC
Q 015650 87 TLLHISFNQ--D-HGCFAAGT-----DHGFRIYNCD--PFREIFRRDFERGGGIGVVEMLFRCNIL-----ALVGGGPDP 151 (403)
Q Consensus 87 ~i~~i~~s~--d-~~~l~~~~-----~~~i~iw~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~s~~~d~ 151 (403)
.+.++.|+. + +.+||.|+ .+.|.|-.++ +++.+....+ .|..+++.+.|.|+.. .|++.+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~f--d~~YP~tK~~wiPd~~g~~pdlLATs~--- 120 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANF--DHPYPVTKLMWIPDSKGVYPDLLATSS--- 120 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCC--CCCCCccceEecCCccccCcchhhccc---
Confidence 577888873 3 45688887 2347776664 3343333444 4889999999988753 466665
Q ss_pred CCCCceEEEEECCCC--ce--eEEE------ecCCceeEEEEec-CceEEE---ecCeEEEEEcCCce---eeeEeeccC
Q 015650 152 QYPLNKVMIWDDHQS--RC--IGEL------SFRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLK---LLHQIETIA 214 (403)
Q Consensus 152 ~~~~~~i~iwd~~~~--~~--~~~~------~~~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~~---~~~~~~~~~ 214 (403)
..+++|.+... +. ...+ ++..++++..|+. |-+++. .|-+..|||++++. ...++-.|.
T Consensus 121 ----D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD 196 (364)
T KOG0290|consen 121 ----DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD 196 (364)
T ss_pred ----CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecC
Confidence 47999998742 21 1111 1567899999987 445555 49999999999863 345567899
Q ss_pred CCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEe---e-cCCceEEEEEcC-CCCEEEEEeCCCcEEEEEEcC
Q 015650 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM---A-HDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTL 289 (403)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~---~-~~~~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~ 289 (403)
..+..++|...+..+ +++.| .||.+++||++.....++. . ...+...++|++ |-+++|+-..|...|.|.|++
T Consensus 197 KEV~DIaf~~~s~~~-FASvg-aDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR 274 (364)
T KOG0290|consen 197 KEVYDIAFLKGSRDV-FASVG-ADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR 274 (364)
T ss_pred cceeEEEeccCccce-EEEec-CCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence 999999999976665 45546 7999999999986654432 1 245678888887 567888877777669999998
Q ss_pred C-CcEEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccccccccee
Q 015650 290 D-GTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYF 367 (403)
Q Consensus 290 ~-~~~~~~~~~~~~~~~v~~l~~s~d~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (403)
. ...+..+++ |.+.|++|+|.|.. .+|+++++|..+.|||+.+.-.....++ .+
T Consensus 275 ~P~tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP------------------il---- 330 (364)
T KOG0290|consen 275 VPCTPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP------------------IL---- 330 (364)
T ss_pred CCCcceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc------------------hh----
Confidence 6 456677775 88999999999965 5899999999999999987653111110 00
Q ss_pred eeeeeeEEEEEeCCCceEEEecc-CCCEEEEEcc
Q 015650 368 SSEWSVAQFRLVEGSPYIVAFGH-QKNTVVILGM 400 (403)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~fs~-d~~~l~~~~~ 400 (403)
..+ .++.|+.+.|++ .+..|+++..
T Consensus 331 -------ay~-a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 331 -------AYT-AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred -------hhh-ccceeeeeeecccCCCEEEEEec
Confidence 012 356788899985 5677777654
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=5.2e-18 Score=138.75 Aligned_cols=228 Identities=13% Similarity=0.114 Sum_probs=168.6
Q ss_pred CCCeEEEEEc-------CCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcc---eeEEEEeeeCCeEEEeeCCCCCCC
Q 015650 85 PPTLLHISFN-------QDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGG---IGVVEMLFRCNILALVGGGPDPQY 153 (403)
Q Consensus 85 ~~~i~~i~~s-------~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~s~~~d~~~ 153 (403)
...|...+|- |+..++|+.+ +.-|++||.-+++.......- .|. ....++.|++|+..|+.|..
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~y-dh~de~taAhsL~Fs~DGeqlfaGyk---- 178 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAY-DHQDEYTAAHSLQFSPDGEQLFAGYK---- 178 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhh-hhHHhhhhheeEEecCCCCeEeeccc----
Confidence 3456666664 5667777777 444999999887765332222 222 35678999999999999887
Q ss_pred CCceEEEEEC-CCCceeEEE---ec-----CCceeEEEEecCce-EEE---ecCeEEEEEcCCceeeeEeeccCCCceeE
Q 015650 154 PLNKVMIWDD-HQSRCIGEL---SF-----RSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIETIANPKGLC 220 (403)
Q Consensus 154 ~~~~i~iwd~-~~~~~~~~~---~~-----~~~i~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 220 (403)
..|++||+ +.|+....+ .+ .+.|.+++|+|... .++ ...++-||.-..++++..+.+|.+.|+.+
T Consensus 179 --rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL 256 (406)
T KOG2919|consen 179 --RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL 256 (406)
T ss_pred --ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE
Confidence 69999998 555432222 12 56788999999654 555 35677777777788999999999999999
Q ss_pred EEeeCCCeEEEEeeCCccCeEEEEEccCC--ceeEEeecCC-ceEEE--EEcCCCCEEEEEeCCCcEEEEEEcCC-CcEE
Q 015650 221 AVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDS-RIACF--ALTQDGQLLATSSTKGTLVRIFNTLD-GTLL 294 (403)
Q Consensus 221 ~~~~~~~~~~~~~~g~~d~~i~v~d~~~~--~~~~~~~~~~-~i~~~--~~sp~g~~l~s~~~dg~~i~iwd~~~-~~~~ 294 (403)
+|.++++.++..+ ..+-.|..||++.. .+..+..|.. .-..| ...|+|++|++|+.||. |++||+++ +..+
T Consensus 257 ~~~edGn~lfsGa--Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~-V~vwdlk~~gn~~ 333 (406)
T KOG2919|consen 257 QWCEDGNKLFSGA--RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGS-VRVWDLKDLGNEV 333 (406)
T ss_pred EeccCcCeecccc--cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCcc-EEEEecCCCCCcc
Confidence 9999999766543 67889999999983 3444555654 33334 44689999999999999 99999988 6655
Q ss_pred EEEecCCCcccEEEEEeCCCCCEEEEEeCC
Q 015650 295 QEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324 (403)
Q Consensus 295 ~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d 324 (403)
..+.. +...++.++++|--.++++++..
T Consensus 334 sv~~~--~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 334 SVTGN--YSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccc--ccccccceecCcccceeeeccCc
Confidence 55553 67889999999998888887654
No 172
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=6.3e-19 Score=166.13 Aligned_cols=239 Identities=13% Similarity=0.180 Sum_probs=166.5
Q ss_pred EEEEcCCCC-EEEEEc-----C------CcEEEEEcCCCeeE----EEEecccCcceeEEEEeeeCCeEE----EeeCCC
Q 015650 90 HISFNQDHG-CFAAGT-----D------HGFRIYNCDPFREI----FRRDFERGGGIGVVEMLFRCNILA----LVGGGP 149 (403)
Q Consensus 90 ~i~~s~d~~-~l~~~~-----~------~~i~iw~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~----~~s~~~ 149 (403)
.++|+|++. ++|+|. | ..+-||.++-.... ....+. ...+...++|.+.+.. +++|..
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCCCccceeecccc
Confidence 468999986 566653 2 22556655322211 223332 4567788888776554 888888
Q ss_pred CCCCCCceEEEEECCC---C---ceeEEEe-cCCceeEEEEecCce-EEE---ecCeEEEEEcCCceeeeEeec--cCCC
Q 015650 150 DPQYPLNKVMIWDDHQ---S---RCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIET--IANP 216 (403)
Q Consensus 150 d~~~~~~~i~iwd~~~---~---~~~~~~~-~~~~i~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~~~--~~~~ 216 (403)
| |.|.+||... + ..+.++. |.+.|..+.|++... +++ .||.|.|||++..+.-..... ....
T Consensus 89 d-----G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~e 163 (1049)
T KOG0307|consen 89 D-----GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSE 163 (1049)
T ss_pred C-----CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCccc
Confidence 8 9999999765 2 2344555 999999999999765 666 489999999987544333321 2345
Q ss_pred ceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecC--CceEEEEEcCCC-CEEEEEeCCCc--EEEEEEcCC
Q 015650 217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHD--SRIACFALTQDG-QLLATSSTKGT--LVRIFNTLD 290 (403)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~--~~i~~~~~sp~g-~~l~s~~~dg~--~i~iwd~~~ 290 (403)
|.+++|+..-.+ +.++++.+|.+.|||++.++ +..+..+. ..+..++|+|+. ..|++++.|.. +|.+||++.
T Consensus 164 I~~lsWNrkvqh--ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 164 IKCLSWNRKVSH--ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF 241 (1049)
T ss_pred ceEeccchhhhH--HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence 666666665444 33346688999999999864 33333333 357899999976 45666665542 399999885
Q ss_pred C-cEEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCcEEEEEeecCCCCC
Q 015650 291 G-TLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSA 339 (403)
Q Consensus 291 ~-~~~~~~~~~~~~~~v~~l~~s~d~-~~l~s~~~dg~v~iwd~~~~~~~~ 339 (403)
. ..+++++. |...|.+|.|++.+ ++|++++.|+.|.+|+.++++.+-
T Consensus 242 assP~k~~~~--H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 242 ASSPLKILEG--HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred cCCchhhhcc--cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 4 45666654 78899999999966 789999999999999999998543
No 173
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=5.8e-16 Score=138.27 Aligned_cols=237 Identities=11% Similarity=0.052 Sum_probs=158.2
Q ss_pred CCeEEEEEcCCCCEEEEEc--CCcEEEEEcCC-CeeEEEEecccCcceeEEEEeeeCCeEEEeeCCC-CCCCCCceEEEE
Q 015650 86 PTLLHISFNQDHGCFAAGT--DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGP-DPQYPLNKVMIW 161 (403)
Q Consensus 86 ~~i~~i~~s~d~~~l~~~~--~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-d~~~~~~~i~iw 161 (403)
+....++++|++++|+++. +++|.+|+++. +......... .......+.+++++..++++.. + +.|.+|
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~~-----~~v~v~ 107 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASYNA-----NCVSVS 107 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEcCC-----CeEEEE
Confidence 4567789999999987765 45599999973 2222223222 2224567889998876665543 4 899999
Q ss_pred ECCCC-c---eeEEEecCCceeEEEEecCceEEE----ecCeEEEEEcCCceeee-------EeeccCCCceeEEEeeCC
Q 015650 162 DDHQS-R---CIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLH-------QIETIANPKGLCAVSQGV 226 (403)
Q Consensus 162 d~~~~-~---~~~~~~~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 226 (403)
++.+. . .+..+.+......++++|++++++ .++.|.+||+.+...+. .+.. ......+.|+|++
T Consensus 108 ~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg 186 (330)
T PRK11028 108 PLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQ 186 (330)
T ss_pred EECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCC
Confidence 98643 2 233333445577889999998775 37899999997633221 1111 2334678999999
Q ss_pred CeEEEEeeCCccCeEEEEEccC--CceeE---Eeec------CCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCc--
Q 015650 227 GSLVLVCPGLQKGQVRVEHYAS--KRTKF---IMAH------DSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGT-- 292 (403)
Q Consensus 227 ~~~~~~~~g~~d~~i~v~d~~~--~~~~~---~~~~------~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~-- 292 (403)
+.++++. ..++.|.+|+++. +.... +..+ ......+.|+|+|++|+++.. ++. |.+|++....
T Consensus 187 ~~lyv~~--~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~-I~v~~i~~~~~~ 263 (330)
T PRK11028 187 QYAYCVN--ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL-ISVFSVSEDGSV 263 (330)
T ss_pred CEEEEEe--cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe-EEEEEEeCCCCe
Confidence 8776664 3479999999973 23222 2211 122346889999999998865 566 9999986432
Q ss_pred --EEEEEecCCCcccEEEEEeCCCCCEEEEEeC-CCcEEEEEeecCC
Q 015650 293 --LLQEVRRGADRAEIYSLAFSSNAQWLAVSSD-KGTVHVFNLKVNS 336 (403)
Q Consensus 293 --~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~-dg~v~iwd~~~~~ 336 (403)
.+..+.. ......+.|+|||++|+++.. +++|.+|+++...
T Consensus 264 ~~~~~~~~~---~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~ 307 (330)
T PRK11028 264 LSFEGHQPT---ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGET 307 (330)
T ss_pred EEEeEEEec---cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCC
Confidence 2233322 124567899999999998774 8999999997543
No 174
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4.2e-17 Score=134.43 Aligned_cols=265 Identities=15% Similarity=0.173 Sum_probs=178.2
Q ss_pred CEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeC--CeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-
Q 015650 98 GCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS- 173 (403)
Q Consensus 98 ~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~- 173 (403)
..+|++..++ |++||..+++.+ ..+. ++...+..+.|.. ....+.+++.| |+|++||++....+..+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l--~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssD-----G~Vr~wD~Rs~~e~a~~~~ 112 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL--EEFK-GPPATTNGVRFISCDSPHGVISCSSD-----GTVRLWDIRSQAESARISW 112 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh--heec-CCCCcccceEEecCCCCCeeEEeccC-----CeEEEEEeecchhhhheec
Confidence 4566666555 999999886655 5565 5666666666654 45667777777 999999999887665555
Q ss_pred --cC-CceeEEEEecCceEEE-------ecCeEEEEEcCCcee-eeEe-eccCCCceeEEEeeCCCeEEEEeeCCccCeE
Q 015650 174 --FR-SEVRSVKLRRDRIIVV-------LEQKIFVYNFADLKL-LHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQV 241 (403)
Q Consensus 174 --~~-~~i~~~~~~~~~~~~~-------~d~~i~i~d~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 241 (403)
++ .+..+++.+-.+.+++ .+-.|.+||.+..+. +..+ +.|.+.|+.++|+|....+++ +|+.||.|
T Consensus 113 ~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLl--SGSvDGLv 190 (376)
T KOG1188|consen 113 TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLL--SGSVDGLV 190 (376)
T ss_pred cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEE--eecccceE
Confidence 33 4566777765555555 367899999998655 5444 679999999999998887654 37899999
Q ss_pred EEEEccCCc----eeEEeecCCceEEEEEcCCC-CEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc----------ccE
Q 015650 242 RVEHYASKR----TKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR----------AEI 306 (403)
Q Consensus 242 ~v~d~~~~~----~~~~~~~~~~i~~~~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~----------~~v 306 (403)
.|||+.... +.....|...|.++.|..++ +.|.+-+..++ ..+|+++.+.+...+...... ..+
T Consensus 191 nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et-f~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~ 269 (376)
T KOG1188|consen 191 NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET-FAIYELEDGSEETWLENPDVSADDLRKEDNCDYV 269 (376)
T ss_pred EeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc-eeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence 999998732 33445678889999999887 45777888888 999999988765554432000 111
Q ss_pred EEEEeCCCCCEEEEEeC-CCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEE-eCCCce
Q 015650 307 YSLAFSSNAQWLAVSSD-KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL-VEGSPY 384 (403)
Q Consensus 307 ~~l~~s~d~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 384 (403)
-......++..++.++. -+...++-+.......... ..+.+++ |.+-|.
T Consensus 270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~-----------------------------~~a~l~g~~~eiVR 320 (376)
T KOG1188|consen 270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLT-----------------------------EPAILQGGHEEIVR 320 (376)
T ss_pred eecccCCCcceEEEeccccCceeEEEeeecccccccC-----------------------------ccccccCCcHHHHH
Confidence 12222234455555544 6677777666433211110 0122333 445667
Q ss_pred EEEeccCCCEEEEEccCC
Q 015650 385 IVAFGHQKNTVVILGMDG 402 (403)
Q Consensus 385 ~~~fs~d~~~l~~~~~dG 402 (403)
.+.|...+..+.+||+||
T Consensus 321 ~i~~~~~~~~l~TGGEDG 338 (376)
T KOG1188|consen 321 DILFDVKNDVLYTGGEDG 338 (376)
T ss_pred HHhhhcccceeeccCCCc
Confidence 777877888888888887
No 175
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=3e-17 Score=146.51 Aligned_cols=249 Identities=16% Similarity=0.200 Sum_probs=186.4
Q ss_pred CCCCCCCCccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCC
Q 015650 70 QMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG 148 (403)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~ 148 (403)
.++.+.....++.+|.+.|+|++|+.||+.+|+|+ |+.|.||.-.-. .. ..+ .|...|.++.|+|-...+++++
T Consensus 38 yD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~--LkY--SH~D~IQCMsFNP~~h~LasCs 112 (1081)
T KOG1538|consen 38 YDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GI--LKY--SHNDAIQCMSFNPITHQLASCS 112 (1081)
T ss_pred EeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-ce--eee--ccCCeeeEeecCchHHHhhhcc
Confidence 34455556678999999999999999999999998 455999985422 22 233 4999999999999988888887
Q ss_pred CCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEee---ccCCCceeEEE
Q 015650 149 PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIE---TIANPKGLCAV 222 (403)
Q Consensus 149 ~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~ 222 (403)
- ...-+|.... +.+...+....+.+++|..||.+++ .+|+|.+-+- +++..-.++ +...++..++|
T Consensus 113 L------sdFglWS~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~ 184 (1081)
T KOG1538|consen 113 L------SDFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICW 184 (1081)
T ss_pred h------hhccccChhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEe
Confidence 6 4788998554 3344444567888999999999999 6999999874 454444443 35667889999
Q ss_pred eeCCC---eEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEec
Q 015650 223 SQGVG---SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299 (403)
Q Consensus 223 ~~~~~---~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~ 299 (403)
+|... .-+++.. ....++..|.+.++.+..-..-.-...|+.+-++|.++..|+.|+. +++|- +.|-.+.++-.
T Consensus 185 ~p~sg~G~~di~aV~-DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~-L~~fT-R~GvrLGTvg~ 261 (1081)
T KOG1538|consen 185 NPSSGEGRNDILAVA-DWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ-LSLFT-RDGVRLGTVGE 261 (1081)
T ss_pred cCCCCCCccceEEEE-eccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCc-eEEEe-ecCeEEeeccc
Confidence 98642 1122221 2445566666555444333334445678999999999999999999 99995 67777777764
Q ss_pred CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 300 ~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
....|+.++..|++++++.|+.||+|.-|++-...
T Consensus 262 --~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 262 --QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred --cceeEEEEEEccCCceEEEEEccCeeehhhhHHhH
Confidence 55799999999999999999999999999986544
No 176
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.77 E-value=3.3e-17 Score=134.34 Aligned_cols=237 Identities=15% Similarity=0.211 Sum_probs=170.7
Q ss_pred CCCCCeEEEEEcCC----CCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCe-EEEeeCCCCCCCCCc
Q 015650 83 SPPPTLLHISFNQD----HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLN 156 (403)
Q Consensus 83 ~~~~~i~~i~~s~d----~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~ 156 (403)
.|.+....++|+-| ..+||+|+..| |+|.|+..++.. ..+. +|...|..+.+.|+. .++++++.| .
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~--~~~~-ghG~sINeik~~p~~~qlvls~SkD-----~ 158 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS--KNYR-GHGGSINEIKFHPDRPQLVLSASKD-----H 158 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc--ccee-ccCccchhhhcCCCCCcEEEEecCC-----c
Confidence 47777888888754 35778777666 999998876654 6665 899999999999864 678888888 9
Q ss_pred eEEEEECCCCceeEEEe----cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEe-------------------
Q 015650 157 KVMIWDDHQSRCIGELS----FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQI------------------- 210 (403)
Q Consensus 157 ~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~------------------- 210 (403)
.|++|++++..++..+. |...|.++.|+.++.+++ .|.+|++|++...+....+
T Consensus 159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~ 238 (385)
T KOG1034|consen 159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK 238 (385)
T ss_pred eEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc
Confidence 99999999999999886 899999999999999999 5899999999843211111
Q ss_pred ---------eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-C-c-------------eeEEeecCCceEEE--
Q 015650 211 ---------ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-K-R-------------TKFIMAHDSRIACF-- 264 (403)
Q Consensus 211 ---------~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~-~-------------~~~~~~~~~~i~~~-- 264 (403)
..|...+.++.|- ++ ++++-+ -++.|..|.... + . ...+.-....|.-+
T Consensus 239 ~~fp~fst~diHrnyVDCvrw~--gd--~ilSks-cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf 313 (385)
T KOG1034|consen 239 THFPDFSTTDIHRNYVDCVRWF--GD--FILSKS-CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRF 313 (385)
T ss_pred cccccccccccccchHHHHHHH--hh--heeecc-cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEE
Confidence 1122222222221 22 333323 456899998722 1 0 11222233345544
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEEcCCCcEE--EEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLL--QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (403)
Q Consensus 265 ~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~--~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~ 333 (403)
+|+|-++.||.|...|. |.+||++..++. .++........|...+|+.||..|+..++|++|.-||.-
T Consensus 314 ~~d~~~~~la~gnq~g~-v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 314 AFDPWQKMLALGNQSGK-VYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eecHHHHHHhhccCCCc-EEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 56677899999999999 999999876652 233322234689999999999999999999999999864
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=1.1e-17 Score=146.56 Aligned_cols=251 Identities=14% Similarity=0.174 Sum_probs=182.8
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCC------CeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCC
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP------FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP 151 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~ 151 (403)
.++..|.+.|+.++|.+....|++++.++ +.+|++.. .......+|. +|..+|.+++...++..+++++.|
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~ysgg~D- 365 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHCYSGGID- 365 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEEEeeccC-
Confidence 36778999999999999999999999555 99999921 1223335676 899999999999999999999999
Q ss_pred CCCCceEEEEECCCC----------ceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCc
Q 015650 152 QYPLNKVMIWDDHQS----------RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPK 217 (403)
Q Consensus 152 ~~~~~~i~iwd~~~~----------~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~ 217 (403)
|+|+.|++... .....+. |.+.|+.++++.....++ +||+++.|+...... .++.......
T Consensus 366 ----g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g 440 (577)
T KOG0642|consen 366 ----GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHG 440 (577)
T ss_pred ----ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccC
Confidence 99999965421 1233444 899999999998665555 599999999766554 3343333333
Q ss_pred eeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEe-------ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 015650 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIM-------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (403)
Q Consensus 218 ~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~-------~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~ 289 (403)
.-+.+...........+....+.-.++++.... ...+. .....+.-+.++|.+.+.+++..|+. |+++|..
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~-Ir~~dn~ 519 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS-IRFFDNK 519 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc-eeccccc
Confidence 333343333222222211122333333443322 22221 12245778889999999999999999 9999999
Q ss_pred CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCC
Q 015650 290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (403)
Q Consensus 290 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~ 339 (403)
+++.+..... |...++++++.|+|-+|++++.|+.+++|.+.......
T Consensus 520 ~~~~l~s~~a--~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 520 TGKILHSMVA--HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred ccccchheee--ccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence 9999988885 77899999999999999999999999999998877533
No 178
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.2e-17 Score=139.86 Aligned_cols=197 Identities=22% Similarity=0.277 Sum_probs=155.9
Q ss_pred EEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeE
Q 015650 133 VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQ 209 (403)
Q Consensus 133 ~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~ 209 (403)
..++|+.++..+++++.| |.+|||++.+...+.... |...|.++.|+||+++++ .....+||+.+++..+..
T Consensus 148 k~vaf~~~gs~latgg~d-----g~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTD-----GTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeecccc-----ceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhh
Confidence 578889999999999999 999999987777666655 999999999999999998 233999999999976665
Q ss_pred eecc--CCCceeEEEeeCC--CeEEEEeeCCccCeEEEEEccCC------ceeEEeecCCceEEEEEcCCCCEEEEEeCC
Q 015650 210 IETI--ANPKGLCAVSQGV--GSLVLVCPGLQKGQVRVEHYASK------RTKFIMAHDSRIACFALTQDGQLLATSSTK 279 (403)
Q Consensus 210 ~~~~--~~~~~~~~~~~~~--~~~~~~~~g~~d~~i~v~d~~~~------~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d 279 (403)
.... ......|.|+.++ +.+++++.-..-+.|+.||+... +..........|++++.+++|++++.|+.|
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 5421 2234557777665 34555554445567777776541 222222344579999999999999999999
Q ss_pred CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 280 g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
|. |-|++..+.++++.++. .|...|+.+.|+||.+++++.+.|....+..+.-.+
T Consensus 303 Gs-Vai~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 303 GS-VAIYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred Cc-EEEEEeceeeeeEeehh-hheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence 99 99999999999887775 488999999999999999999999999999988754
No 179
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=3.8e-17 Score=139.08 Aligned_cols=204 Identities=18% Similarity=0.278 Sum_probs=162.6
Q ss_pred ccCCCCCCeEEEEEcCCC-CEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCc
Q 015650 80 TSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLN 156 (403)
Q Consensus 80 ~~~~~~~~i~~i~~s~d~-~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~ 156 (403)
.-.+|++.|.+++|+..- .+||+|+ |.+|++||++++++. ..+. +|...|.++.|++. ...+++|+.| +
T Consensus 238 ~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~--~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D-----~ 309 (463)
T KOG0270|consen 238 SASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK--SSIT-HHGKKVQTLEWHPYEPSVLLSGSYD-----G 309 (463)
T ss_pred ccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcc--eehh-hcCCceeEEEecCCCceEEEecccc-----c
Confidence 345799999999998875 5678887 777999999999877 6676 78999999999874 6789999999 9
Q ss_pred eEEEEECCC-CceeEEEecCCceeEEEEecCceEEE----ecCeEEEEEcCC-ceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650 157 KVMIWDDHQ-SRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLV 230 (403)
Q Consensus 157 ~i~iwd~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (403)
+|.+.|.+. +..-..++..+.|..++|.+.....+ -||+|+-+|+|. ++++.+++.|...|..++++....+++
T Consensus 310 ~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l 389 (463)
T KOG0270|consen 310 TVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLL 389 (463)
T ss_pred eEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcce
Confidence 999999984 34445566889999999998654433 389999999997 589999999999999999998877654
Q ss_pred EEeeCCccCeEEEEEccCCceeEEeecC---CceEEEEEcCCCC-EEEEEeCCCcEEEEEEcCCCcEE
Q 015650 231 LVCPGLQKGQVRVEHYASKRTKFIMAHD---SRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLL 294 (403)
Q Consensus 231 ~~~~g~~d~~i~v~d~~~~~~~~~~~~~---~~i~~~~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~~ 294 (403)
++ ++.++.|++|++..........|. +...|.++.|+-. .|+.|+..+. ++|||+.+...+
T Consensus 390 -~t-~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~-~~vwd~~~~~~V 454 (463)
T KOG0270|consen 390 -ST-ASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAV-LRVWDIFTNSPV 454 (463)
T ss_pred -ee-ccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccce-EEEeecccChhH
Confidence 33 568999999999875554444443 3466778888654 5677888887 999999776544
No 180
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=1.4e-16 Score=128.62 Aligned_cols=237 Identities=10% Similarity=0.134 Sum_probs=165.9
Q ss_pred CCCCCCeEEEEEcCCCC-----EEEEEcCCcEEEEEcCCCee--EEEEecc----cCcceeEEEEeeeC-CeEEEeeCCC
Q 015650 82 SSPPPTLLHISFNQDHG-----CFAAGTDHGFRIYNCDPFRE--IFRRDFE----RGGGIGVVEMLFRC-NILALVGGGP 149 (403)
Q Consensus 82 ~~~~~~i~~i~~s~d~~-----~l~~~~~~~i~iw~~~~~~~--~~~~~~~----~~~~~~v~~~~~~~-~~~~~~s~~~ 149 (403)
..|.=+++.+.|.|+.. +||+ +++.+|+|.+...+. .....+. ..+..+++++.|+. +-.++.+++-
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLAT-SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhc-ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 46888999999999863 3444 466699999874322 1111111 24556888888875 5567778888
Q ss_pred CCCCCCceEEEEECCCCce---eEE-EecCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccC---CCce
Q 015650 150 DPQYPLNKVMIWDDHQSRC---IGE-LSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIA---NPKG 218 (403)
Q Consensus 150 d~~~~~~~i~iwd~~~~~~---~~~-~~~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~---~~~~ 218 (403)
| .+..|||++++.. ... +.|..+|..++|..++.-++ .||.+++||++..+--..+.... .+..
T Consensus 172 D-----TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLl 246 (364)
T KOG0290|consen 172 D-----TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLL 246 (364)
T ss_pred c-----CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcce
Confidence 8 9999999999733 223 34999999999999776555 59999999999865444433222 2333
Q ss_pred eEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeEEeecCCceEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCc---
Q 015650 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGT--- 292 (403)
Q Consensus 219 ~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~-g~~l~s~~~dg~~i~iwd~~~~~--- 292 (403)
-+++++...+ ++|+-......|.+.|++. ..+..+..|.+.|+.++|.|. ...|++++.|.. +-+||+...-
T Consensus 247 RLswnkqDpn-ymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q~~~~~ 324 (364)
T KOG0290|consen 247 RLSWNKQDPN-YMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQMPREN 324 (364)
T ss_pred eeccCcCCch-HHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce-EEEEecccccccC
Confidence 4455444333 4555455678899999998 456778999999999999995 568899999998 9999997532
Q ss_pred ---EEEEEecCCCcccEEEEEeCC-CCCEEEEEeCCCcEEEE
Q 015650 293 ---LLQEVRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVF 330 (403)
Q Consensus 293 ---~~~~~~~~~~~~~v~~l~~s~-d~~~l~s~~~dg~v~iw 330 (403)
++..+. -.+.|+.+.|++ .+.+|+.+. ++.+.|.
T Consensus 325 ~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~-~kkleiL 362 (364)
T KOG0290|consen 325 GEDPILAYT---AGGEVNQIQWSSSQPDWIAICF-GKKLEIL 362 (364)
T ss_pred CCCchhhhh---ccceeeeeeecccCCCEEEEEe-cCeeeEE
Confidence 222233 346899999996 556777765 4455554
No 181
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=6.8e-15 Score=135.19 Aligned_cols=177 Identities=14% Similarity=0.089 Sum_probs=125.3
Q ss_pred ceEEEEECCCCceeEEEecCCceeEEEEecCceEEEe------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (403)
..|.+||...........+...+...+|+|||..++. +..|++||+.+++... +...........|+|+++.+
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEE
Confidence 4799999776554444447778999999999988772 3479999998875433 22233445568999999987
Q ss_pred EEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCC-Cc-EEEEEEcCCCcEEEEEecCCCcccEE
Q 015650 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-GT-LVRIFNTLDGTLLQEVRRGADRAEIY 307 (403)
Q Consensus 230 ~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d-g~-~i~iwd~~~~~~~~~~~~~~~~~~v~ 307 (403)
+++.....+..|++||+.++....+..+...+....|+|||+.|+..+.+ +. .|+++|+.+++.. .+.. ......
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~--~~~~~~ 334 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW--EGSQNQ 334 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec--CCCCcc
Confidence 76643223346999999988877777666678899999999999877764 33 1555577666553 3332 223456
Q ss_pred EEEeCCCCCEEEEEeCC---CcEEEEEeecCC
Q 015650 308 SLAFSSNAQWLAVSSDK---GTVHVFNLKVNS 336 (403)
Q Consensus 308 ~l~~s~d~~~l~s~~~d---g~v~iwd~~~~~ 336 (403)
...|+|||++|+..+.+ ..|++||+++++
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 78999999999876543 358888887775
No 182
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=1.1e-17 Score=143.22 Aligned_cols=227 Identities=16% Similarity=0.175 Sum_probs=185.7
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650 85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (403)
Q Consensus 85 ~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~ 163 (403)
.-.-..+.|+.+|+.|+.|+..| |..+|+.+++..++.. -...|.++.|-.+..+++.+.. ..++|||
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~----v~Etv~Dv~~LHneq~~AVAQK------~y~yvYD- 197 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN----VMETVRDVTFLHNEQFFAVAQK------KYVYVYD- 197 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee----hhhhhhhhhhhcchHHHHhhhh------ceEEEec-
Confidence 34567889999999999998777 9999999887765433 4467888888777777777765 6899999
Q ss_pred CCCceeEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCe
Q 015650 164 HQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240 (403)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 240 (403)
..|..+..++-...|..+.|-|-..+++ ..|.++.-|+.+|+.+..+....+.+..++-+|.+. +...|..+|+
T Consensus 198 ~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na---Vih~GhsnGt 274 (545)
T KOG1272|consen 198 NNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA---VIHLGHSNGT 274 (545)
T ss_pred CCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc---eEEEcCCCce
Confidence 7888888888778899999999988888 367899999999999999988888888888888764 4445778999
Q ss_pred EEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEE
Q 015650 241 VRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLA 319 (403)
Q Consensus 241 i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~ 319 (403)
|.+|....+. +..+..|.++|.+|++.++|+|++|.+.|.. |+|||+++...+.++.. ..+...++||..| .|
T Consensus 275 VSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg-lL- 348 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNFYQLHTYRT---PHPASNLSLSQKG-LL- 348 (545)
T ss_pred EEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccccccceeec---CCCcccccccccc-ce-
Confidence 9999988754 4567789999999999999999999999999 99999999887777764 3456778887654 34
Q ss_pred EEeCCCcEEEEE
Q 015650 320 VSSDKGTVHVFN 331 (403)
Q Consensus 320 s~~~dg~v~iwd 331 (403)
+.+....|.||.
T Consensus 349 A~~~G~~v~iw~ 360 (545)
T KOG1272|consen 349 ALSYGDHVQIWK 360 (545)
T ss_pred eeecCCeeeeeh
Confidence 444555799995
No 183
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=2.3e-15 Score=138.68 Aligned_cols=170 Identities=15% Similarity=0.113 Sum_probs=119.7
Q ss_pred ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEEe------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (403)
..|++||..... .+.+. +...+..+.|+|||..++. +..|++||+.+++... +..........+|+|+++.
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~ 261 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSR 261 (429)
T ss_pred EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCE
Confidence 689999976555 44444 7778999999999988872 2379999998875422 2222233456899999987
Q ss_pred EEEEeeCCccCeE--EEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEe-CCCcEEEEEEcCC-CcEEEEEecCCCcc
Q 015650 229 LVLVCPGLQKGQV--RVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLD-GTLLQEVRRGADRA 304 (403)
Q Consensus 229 ~~~~~~g~~d~~i--~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~-~dg~~i~iwd~~~-~~~~~~~~~~~~~~ 304 (403)
++++. ..+|.+ .+||+.++....+..+...+....|+|||+.|+..+ .++. .+||++.. +.....+ . +..
T Consensus 262 La~~~--~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~-~~I~~~~~~~~~~~~l-~--~~~ 335 (429)
T PRK01742 262 LAFAS--SKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGS-PQVYRMSASGGGASLV-G--GRG 335 (429)
T ss_pred EEEEE--ecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCC-ceEEEEECCCCCeEEe-c--CCC
Confidence 66654 345654 455777777777777777888999999999887655 4677 88887643 2222233 2 222
Q ss_pred cEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 305 ~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
..+.|+|||++|+..+.++ +.+||+.+++
T Consensus 336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~ 364 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDN-VVKQDLTSGS 364 (429)
T ss_pred --CCccCCCCCCEEEEEcCCC-EEEEECCCCC
Confidence 4578999999998887765 6669998876
No 184
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.3e-15 Score=137.66 Aligned_cols=286 Identities=14% Similarity=0.184 Sum_probs=197.0
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCC--CeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (403)
.+...|.-.++|.+++|+++++|+|..+| |.+|.--. ........+. =|...|.++.|+.+|.++.+|+..
T Consensus 199 ~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH-WH~~~V~~L~fS~~G~~LlSGG~E----- 272 (792)
T KOG1963|consen 199 DITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH-WHHDEVNSLSFSSDGAYLLSGGRE----- 272 (792)
T ss_pred hhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE-ecccccceeEEecCCceEeecccc-----
Confidence 44566777799999999999999998555 99997432 2222223333 578899999999999999999999
Q ss_pred ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeecc-----------CCCceeE
Q 015650 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI-----------ANPKGLC 220 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~-----------~~~~~~~ 220 (403)
+.+.+|.+.+++ .+-+. -..+|..+.++||+.+.+ .|+.|.+....+.+....+.+. ..-...+
T Consensus 273 ~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~ 351 (792)
T KOG1963|consen 273 GVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGV 351 (792)
T ss_pred eEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeE
Confidence 999999999998 33333 789999999999988766 6999999988766554444322 2223457
Q ss_pred EEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEe-----------ecCCceEEEEEcCCCCEEEEEeC--------CC
Q 015650 221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIM-----------AHDSRIACFALTQDGQLLATSST--------KG 280 (403)
Q Consensus 221 ~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~-----------~~~~~i~~~~~sp~g~~l~s~~~--------dg 280 (403)
+++|..+...+ .| ..|.|.+||+-+.. +..+. .+.-.++.++.+..|.+++|.-. ||
T Consensus 352 ~idpr~~~~vl--n~-~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~ 428 (792)
T KOG1963|consen 352 SIDPRTNSLVL--NG-HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDG 428 (792)
T ss_pred EEcCCCCceee--cC-CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCc
Confidence 77775443333 23 78999999987733 22211 12235777888888999998643 32
Q ss_pred c-EEEEEEcCCC----cEEEEEecCCCcccEEEEEeC-CCCC-EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcc
Q 015650 281 T-LVRIFNTLDG----TLLQEVRRGADRAEIYSLAFS-SNAQ-WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT 353 (403)
Q Consensus 281 ~-~i~iwd~~~~----~~~~~~~~~~~~~~v~~l~~s-~d~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (403)
. .+++|-.... .+...+..+ |...+...++. +... ..++++.||.++||-+...++..+..
T Consensus 429 e~~LKFW~~n~~~kt~~L~T~I~~P-H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~----------- 496 (792)
T KOG1963|consen 429 EVSLKFWQYNPNSKTFILNTKINNP-HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKS----------- 496 (792)
T ss_pred eEEEEEEEEcCCcceeEEEEEEecC-CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCc-----------
Confidence 1 2788965432 333344433 66555554444 3333 78999999999999998877643332
Q ss_pred cccccccccccceeeeeeeeEEE-EEeCCCceEEEeccCCCEEEEEccC
Q 015650 354 SSLSFIKGVLPKYFSSEWSVAQF-RLVEGSPYIVAFGHQKNTVVILGMD 401 (403)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~fs~d~~~l~~~~~d 401 (403)
..|....+ ..+..+++.++|+.||..|+++.+|
T Consensus 497 ---------------s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~ 530 (792)
T KOG1963|consen 497 ---------------SNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDD 530 (792)
T ss_pred ---------------cceEEeeeeccccCcccchhhcCCCcEEEEecCC
Confidence 44543322 2456789999999999887777654
No 185
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=9.5e-16 Score=128.83 Aligned_cols=202 Identities=13% Similarity=0.159 Sum_probs=155.3
Q ss_pred cCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEEEECCCC-------ceeEEEe-cCCceeEEEEecCceEEE----e
Q 015650 126 RGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDRIIVV----L 192 (403)
Q Consensus 126 ~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~~-------~~~~~~~-~~~~i~~~~~~~~~~~~~----~ 192 (403)
.+|...+..+.|+| +...+++++.| .+|.||.+..+ +++..+. |...|--++|+|....+. .
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD-----~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSED-----TKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred cCccccccccccCccCCceeecCCCC-----ceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 48999999999998 56789999999 99999998654 4566666 899999999999654333 5
Q ss_pred cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEE-eecCCc-eEEEEEcCCC
Q 015650 193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI-MAHDSR-IACFALTQDG 270 (403)
Q Consensus 193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~-~~~~~~-i~~~~~sp~g 270 (403)
|++|.+||+.+|+.+.++. |.+.+..+.|+.+|..+ ++ .+.|..|+|||.+++.+..- .+|.+. -..+.|-.+|
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l--~T-tckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g 228 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLL--CT-TCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG 228 (472)
T ss_pred CceEEEEeccCCceeeecC-CCCeEEEEEeccCCcee--ee-ecccceeEEEcCCCCcEeeecccccCCCcceeEEeccC
Confidence 9999999999999988887 89999999999998854 33 34999999999999776543 467653 3455677888
Q ss_pred CEEEEEeC---CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCcEEEEEeecCCC
Q 015650 271 QLLATSST---KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSG 337 (403)
Q Consensus 271 ~~l~s~~~---dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~~~ 337 (403)
.++-+|-. +.. +-+||..+.+....+..-...+.|.---|.+|..+|..++ .|+.|+-|.+....+
T Consensus 229 ~i~tTGfsr~seRq-~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 229 KIFTTGFSRMSERQ-IALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred ceeeeccccccccc-eeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 85555532 556 9999977654322222211446788888999999886555 899999999988764
No 186
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=9.4e-16 Score=141.48 Aligned_cols=177 Identities=14% Similarity=0.081 Sum_probs=125.4
Q ss_pred ceEEEEECCCCceeEEEecCCceeEEEEecCceEEEe------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (403)
..|.+||...........+...+....|+||+..++. +..|++||+.+++... +...........|+|+++.+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence 4799999754444333347778999999999987772 2469999998876533 33333444578999999987
Q ss_pred EEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeC-CCc-EEEEEEcCCCcEEEEEecCCCcccEE
Q 015650 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KGT-LVRIFNTLDGTLLQEVRRGADRAEIY 307 (403)
Q Consensus 230 ~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~-dg~-~i~iwd~~~~~~~~~~~~~~~~~~v~ 307 (403)
++......+..|++||+.++....+..+.......+|+|||++|+..+. +|. .|+++|+.+++..+... +.....
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~---~g~~~~ 339 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF---QGNYNA 339 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec---CCCCcc
Confidence 7665333345799999999888777777666678999999999987764 332 16667777766543322 223445
Q ss_pred EEEeCCCCCEEEEEeCCC---cEEEEEeecCC
Q 015650 308 SLAFSSNAQWLAVSSDKG---TVHVFNLKVNS 336 (403)
Q Consensus 308 ~l~~s~d~~~l~s~~~dg---~v~iwd~~~~~ 336 (403)
.++|+|||++|+..+.++ .|++||+.+++
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence 789999999998765433 58999998766
No 187
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=6.2e-15 Score=136.25 Aligned_cols=175 Identities=10% Similarity=0.099 Sum_probs=126.8
Q ss_pred ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEEe------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (403)
..|.++|..... .+.+. +...+....|+|||..++. +..|++||+.+++.. .+......+....|+|+++.
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 589999975444 44454 7789999999999987772 358999999887653 34444556678899999998
Q ss_pred EEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCC-C--cEEEEEEcCCCcEEEEEecCCCccc
Q 015650 229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-G--TLVRIFNTLDGTLLQEVRRGADRAE 305 (403)
Q Consensus 229 ~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d-g--~~i~iwd~~~~~~~~~~~~~~~~~~ 305 (403)
+++.........|++||+.++....+..+........|+|||+.|+..+.. | . |++||+..++... +.. +...
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~-Iy~~d~~g~~~~~-lt~--~~~~ 335 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQ-LYVMNADGSNPRR-ISF--GGGR 335 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCe-EEEEECCCCCeEE-eec--CCCc
Confidence 766653223345888899888888777777777889999999999877643 2 5 8888987665543 332 2345
Q ss_pred EEEEEeCCCCCEEEEEeCC---CcEEEEEeecCC
Q 015650 306 IYSLAFSSNAQWLAVSSDK---GTVHVFNLKVNS 336 (403)
Q Consensus 306 v~~l~~s~d~~~l~s~~~d---g~v~iwd~~~~~ 336 (403)
+....|+|||++|+....+ ..|.+||+..+.
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 6778999999999877643 357777775443
No 188
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=1.1e-15 Score=128.48 Aligned_cols=224 Identities=13% Similarity=0.136 Sum_probs=162.9
Q ss_pred CccccCCCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEEcCCCeeE-----EEEecccCcceeEEEEeeeCC-eEEEeeCC
Q 015650 77 AESTSSSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFREI-----FRRDFERGGGIGVVEMLFRCN-ILALVGGG 148 (403)
Q Consensus 77 ~~~~~~~~~~~i~~i~~s~d~-~~l~~~~~~~-i~iw~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~ 148 (403)
+.....+|.+.|..++|+|.. ..||+|+++. |.||.+...... ....|. +|...|--+.|+|. ...|++++
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe-ecceeEEEEeecccchhhHhhcc
Confidence 446789999999999999954 6678888666 999998543221 124555 89999999999885 45677777
Q ss_pred CCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCce-eEEEee
Q 015650 149 PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKG-LCAVSQ 224 (403)
Q Consensus 149 ~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~ 224 (403)
.| ++|.+||+.+|+.+.++.|...|.++.|+.||.+++ -|..|+|||.++++.+.+-..|.+.-. -..|-.
T Consensus 152 ~D-----n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 152 SD-----NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA 226 (472)
T ss_pred CC-----ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec
Confidence 77 999999999999999999999999999999999999 399999999999999888766665432 233444
Q ss_pred CCCeEEEEeeC---CccCeEEEEEccCCc----eeEEeecCCceEEEEEcCCCCEEEEEe-CCCcEEEEEEcCCCcE---
Q 015650 225 GVGSLVLVCPG---LQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTL--- 293 (403)
Q Consensus 225 ~~~~~~~~~~g---~~d~~i~v~d~~~~~----~~~~~~~~~~i~~~~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~--- 293 (403)
+++ ++++| ..+.++-+||..+-. ...+. ....|.---|++|.++++.++ .|+. |+-|.+.+..+
T Consensus 227 ~g~---i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~-IRYyEit~d~P~~h 301 (472)
T KOG0303|consen 227 SGK---IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSS-IRYFEITNEPPFVH 301 (472)
T ss_pred cCc---eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcc-eEEEEecCCCceeE
Confidence 444 33333 457889999987622 12222 344566666889988887655 5888 99999876553
Q ss_pred -EEEEecCCCcccEEEEEeCCC
Q 015650 294 -LQEVRRGADRAEIYSLAFSSN 314 (403)
Q Consensus 294 -~~~~~~~~~~~~v~~l~~s~d 314 (403)
+.+|. ...+-..+.|-|.
T Consensus 302 yln~f~---S~epQRG~g~mPK 320 (472)
T KOG0303|consen 302 YLNTFS---SKEPQRGMGFMPK 320 (472)
T ss_pred Eecccc---cCCcccccccccc
Confidence 22332 2234455666553
No 189
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=8.2e-16 Score=141.58 Aligned_cols=210 Identities=14% Similarity=0.071 Sum_probs=144.7
Q ss_pred cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecC
Q 015650 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD 186 (403)
Q Consensus 107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~ 186 (403)
.|.+||.+.... +.+. .+...+....|+|++..++..+.+. ....|++||+.+++.............++|+||
T Consensus 185 ~i~i~d~dg~~~---~~lt-~~~~~v~~p~wSPDG~~la~~s~~~--~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPD 258 (429)
T PRK01742 185 EVRVADYDGFNQ---FIVN-RSSQPLMSPAWSPDGSKLAYVSFEN--KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPD 258 (429)
T ss_pred EEEEECCCCCCc---eEec-cCCCccccceEcCCCCEEEEEEecC--CCcEEEEEeCCCCceEEEecCCCccCceeECCC
Confidence 388888865543 2333 4666789999999988776654320 015799999988865433323444567899999
Q ss_pred ceEEE--e--cCe--EEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeEEeecC
Q 015650 187 RIIVV--L--EQK--IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHD 258 (403)
Q Consensus 187 ~~~~~--~--d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~~~~~ 258 (403)
|..++ . ++. |++||+.+++. ..+..+...+....|+|+++.+++++ ..++...||+++. +....+ .+.
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s--~~~g~~~I~~~~~~~~~~~~l-~~~ 334 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTS--DRSGSPQVYRMSASGGGASLV-GGR 334 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEE--CCCCCceEEEEECCCCCeEEe-cCC
Confidence 98776 2 554 55667766553 44555555677899999998766554 3567778887653 333333 343
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650 259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (403)
Q Consensus 259 ~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~ 334 (403)
. .+..|+|||++|+..+.++ +.+||+.+++....... .....+.|+|||++|+.++.++.+.+|++..
T Consensus 335 ~--~~~~~SpDG~~ia~~~~~~--i~~~Dl~~g~~~~lt~~----~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~ 402 (429)
T PRK01742 335 G--YSAQISADGKTLVMINGDN--VVKQDLTSGSTEVLSST----FLDESPSISPNGIMIIYSSTQGLGKVLQLVS 402 (429)
T ss_pred C--CCccCCCCCCEEEEEcCCC--EEEEECCCCCeEEecCC----CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 3 4678999999998887765 67799998876533221 1235678999999999999999999998764
No 190
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=6.8e-16 Score=144.55 Aligned_cols=276 Identities=16% Similarity=0.194 Sum_probs=180.0
Q ss_pred CeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecc--cCcceeEEEEeeeC--CeEEEeeCCCCCCCCCceEEEE
Q 015650 87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRC--NILALVGGGPDPQYPLNKVMIW 161 (403)
Q Consensus 87 ~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~~~~i~iw 161 (403)
.-..+.|+|-...+++++++. |+|||.+.++.. ..|. ......|..+.+-. |.-.+.+++.| |.|+||
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l--~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d-----GvIRIw 1138 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL--NGFDNGAFPDTRVSDLELINEQDDALLLTASSD-----GVIRIW 1138 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCcee--ccccCCCCCCCccceeeeecccchhheeeeccC-----ceEEEe
Confidence 355678899889999998666 999999877654 3343 12345677777643 45567777777 999999
Q ss_pred ECC-C----CceeEEEe-c-------CCceeEEEEecC-ceEEEec--CeEEEEEcCCceeeeEeeccC-CCceeEEEee
Q 015650 162 DDH-Q----SRCIGELS-F-------RSEVRSVKLRRD-RIIVVLE--QKIFVYNFADLKLLHQIETIA-NPKGLCAVSQ 224 (403)
Q Consensus 162 d~~-~----~~~~~~~~-~-------~~~i~~~~~~~~-~~~~~~d--~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~ 224 (403)
+-. + .+++.... . .+.-.-+.|... |.++++. ..|+|||.....++..+.... ..++.+.-+-
T Consensus 1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADL 1218 (1387)
T ss_pred cccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccc
Confidence 732 2 23333222 0 111123455554 4444432 479999998877777765432 2233333222
Q ss_pred CCCeEEEEeeCCccCeEEEEEccCC----ceeEEeecCCc--eEEEEEcCCCCE-EEEEeCCCcEEEEEEcCCCcEEEEE
Q 015650 225 GVGSLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSR--IACFALTQDGQL-LATSSTKGTLVRIFNTLDGTLLQEV 297 (403)
Q Consensus 225 ~~~~~~~~~~g~~d~~i~v~d~~~~----~~~~~~~~~~~--i~~~~~sp~g~~-l~s~~~dg~~i~iwd~~~~~~~~~~ 297 (403)
...+ +++ +|..||.|++||.+.. .+.....|... |..+.+.+.|-. |++|+.+|. |++||++.......+
T Consensus 1219 ~~gn-~i~-AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1219 VHGN-IIA-AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKETFL 1295 (1387)
T ss_pred cCCc-eEE-EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcccccc
Confidence 2322 333 4779999999999873 34566788877 999999987654 999999999 999999874322222
Q ss_pred ecCCC---cccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeE
Q 015650 298 RRGAD---RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA 374 (403)
Q Consensus 298 ~~~~~---~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (403)
..-.| .+.++++..+++...+|+|+. +.|+||++.-.+...... .-.|
T Consensus 1296 ~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~------------n~~F---------------- 1346 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKY------------NPGF---------------- 1346 (1387)
T ss_pred eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhccccc------------Cccc----------------
Confidence 21112 135999999999999999998 999999998665311000 0000
Q ss_pred EEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650 375 QFRLVEGSPYIVAFGHQKNTVVILGMDG 402 (403)
Q Consensus 375 ~~~~~~~~~~~~~fs~d~~~l~~~~~dG 402 (403)
.....+++.+++|+|.--.||+|+.|.
T Consensus 1347 -~~q~~gs~scL~FHP~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1347 -MGQRIGSVSCLAFHPHRLLLAAGSADS 1373 (1387)
T ss_pred -ccCcCCCcceeeecchhHhhhhccCCc
Confidence 011135678999999988888887775
No 191
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=8.1e-16 Score=141.00 Aligned_cols=251 Identities=14% Similarity=0.109 Sum_probs=175.5
Q ss_pred cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCceEEEEECCCCce--eEEE-----ecCCce
Q 015650 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRC--IGEL-----SFRSEV 178 (403)
Q Consensus 107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~i~iwd~~~~~~--~~~~-----~~~~~i 178 (403)
.+.||++... ......+. ....+.++.|++. ...+++|..+ |+|.+||+..+.. ...+ .|..++
T Consensus 223 ~~~vW~~~~p-~~Pe~~~~--~~s~v~~~~f~p~~p~ll~gG~y~-----GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v 294 (555)
T KOG1587|consen 223 VLLVWSLKNP-NTPELVLE--SPSEVTCLKFCPFDPNLLAGGCYN-----GQVVLWDLRKGSDTPPSGLSALEVSHSEPV 294 (555)
T ss_pred eEEEEecCCC-CCceEEEe--cCCceeEEEeccCCcceEEeeccC-----ceEEEEEccCCCCCCCcccccccccCCcCe
Confidence 3789998765 22234453 6678999999884 5567777777 9999999987754 2222 288999
Q ss_pred eEEEEecCce---EEE--ecCeEEEEEcCCcee-ee-----Eee------ccCCCceeEEEeeCCCeEEEEeeCCccCeE
Q 015650 179 RSVKLRRDRI---IVV--LEQKIFVYNFADLKL-LH-----QIE------TIANPKGLCAVSQGVGSLVLVCPGLQKGQV 241 (403)
Q Consensus 179 ~~~~~~~~~~---~~~--~d~~i~i~d~~~~~~-~~-----~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 241 (403)
..+.|..+.. ++. .||.|..|+++.... .. ... .....+..+.|.+.....+++ |++.|.|
T Consensus 295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV--GTe~G~v 372 (555)
T KOG1587|consen 295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIV--GTEEGKV 372 (555)
T ss_pred EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEE--EcCCcEE
Confidence 9999976432 222 699999999875322 11 111 112345678888876666665 4688988
Q ss_pred EEEEccC---Cc------eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC-CCcEEEEEecCCCcccEEEEEe
Q 015650 242 RVEHYAS---KR------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAF 311 (403)
Q Consensus 242 ~v~d~~~---~~------~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~-~~~~~~~~~~~~~~~~v~~l~~ 311 (403)
..-.... .. ......|.+.|+++.++|=+..++..+.|.+ |+||... ...++..+.. +...|++++|
T Consensus 373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~~~Pl~~~~~--~~~~v~~vaW 449 (555)
T KOG1587|consen 373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVIASPLLSLDS--SPDYVTDVAW 449 (555)
T ss_pred EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCCCCcchhhhh--ccceeeeeEE
Confidence 7733222 22 2345678899999999997765555555888 9999987 6667666664 4567999999
Q ss_pred CCCCC-EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEecc
Q 015650 312 SSNAQ-WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH 390 (403)
Q Consensus 312 s~d~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~ 390 (403)
||... .|+++..||.|.|||+......+.. ..+......+.+.|++
T Consensus 450 SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~---------------------------------s~~~~~~~l~~~~~s~ 496 (555)
T KOG1587|consen 450 SPTRPAVFATVDGDGNLDIWDLLQDDEEPVL---------------------------------SQKVCSPALTRVRWSP 496 (555)
T ss_pred cCcCceEEEEEcCCCceehhhhhccccCCcc---------------------------------cccccccccceeecCC
Confidence 99765 6778888999999999887753322 1222244566788999
Q ss_pred CCCEEEEEccCCC
Q 015650 391 QKNTVVILGMDGR 403 (403)
Q Consensus 391 d~~~l~~~~~dG~ 403 (403)
.|+.|++|...|+
T Consensus 497 ~g~~lavGd~~G~ 509 (555)
T KOG1587|consen 497 NGKLLAVGDANGT 509 (555)
T ss_pred CCcEEEEecCCCc
Confidence 9999999999884
No 192
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=2.3e-17 Score=150.59 Aligned_cols=248 Identities=12% Similarity=0.189 Sum_probs=186.4
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (403)
+-+.+|.++|+|+.|...|.++++|+|+. ++||..++..+. ..+. +|...++.++.+.+...+++++.| ..
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l--As~r-Ghs~ditdlavs~~n~~iaaaS~D-----~v 255 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL--ASCR-GHSGDITDLAVSSNNTMIAAASND-----KV 255 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh--ccCC-CCccccchhccchhhhhhhhcccC-----ce
Confidence 55889999999999999999999999777 999998777655 7787 899999999999999999999999 99
Q ss_pred EEEEECCCCceeEEEe-cCCceeEEEEecCceEEEecCeEEEEEcCCc--------------eeeeEeeccCC-------
Q 015650 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVLEQKIFVYNFADL--------------KLLHQIETIAN------- 215 (403)
Q Consensus 158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~--------------~~~~~~~~~~~------- 215 (403)
|++|.+..+.++..+. |.+.|++++|+|-. --..||++++||.+-. .++..+.....
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~-sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCccc-cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 9999999999999998 99999999999955 1115899999998710 00000000000
Q ss_pred ------Cce-eEEEeeCCCeEEEEee----------CCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCC-CEEEEE
Q 015650 216 ------PKG-LCAVSQGVGSLVLVCP----------GLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDG-QLLATS 276 (403)
Q Consensus 216 ------~~~-~~~~~~~~~~~~~~~~----------g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g-~~l~s~ 276 (403)
... ..........+.+++. ...+-.+++|++-++. ...+.+|...+..+.++|-. +...++
T Consensus 335 s~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred cCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhc
Confidence 000 0000011111222211 1245567788877754 45567899999999999954 455689
Q ss_pred eCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650 277 STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (403)
Q Consensus 277 ~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~ 338 (403)
+.||. ..|||+..|.+++....+ | ..+..-+||+||+.++....-|.++|.....++..
T Consensus 415 g~dgs-t~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 415 GYDGS-TIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred cCCCc-eEeeecccCCcceeeecc-c-ceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence 99999 999999999888877754 4 57778899999999999888899999887766654
No 193
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=7e-15 Score=135.09 Aligned_cols=213 Identities=11% Similarity=0.058 Sum_probs=144.2
Q ss_pred EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCc
Q 015650 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (403)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 187 (403)
|.+||.+..... .+. .+...+....|+|++..++...... ....|++|++.+++..........+..+.|+|||
T Consensus 181 l~~~d~dg~~~~---~lt-~~~~~~~~p~wSPDG~~la~~s~~~--g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG 254 (429)
T PRK03629 181 LRVSDYDGYNQF---VVH-RSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG 254 (429)
T ss_pred EEEEcCCCCCCE---Eee-cCCCceeeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCC
Confidence 778887655432 222 2556788999999987766432110 0157999999888654443455556678999999
Q ss_pred eEEEe----cC--eEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccC--eEEEEEccCCceeEEeecCC
Q 015650 188 IIVVL----EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMAHDS 259 (403)
Q Consensus 188 ~~~~~----d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~v~d~~~~~~~~~~~~~~ 259 (403)
..++. ++ .|++||+.+++..+. ......+....|+|+++.+++++ ..++ .|.++|+.++....+..+..
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s--~~~g~~~Iy~~d~~~g~~~~lt~~~~ 331 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTS--DQAGRPQVYKVNINGGAPQRITWEGS 331 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEe--CCCCCceEEEEECCCCCeEEeecCCC
Confidence 87772 33 699999988765443 33344567789999998776654 2333 45555777776666655555
Q ss_pred ceEEEEEcCCCCEEEEEeCC---CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCc---EEEEEee
Q 015650 260 RIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT---VHVFNLK 333 (403)
Q Consensus 260 ~i~~~~~sp~g~~l~s~~~d---g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~---v~iwd~~ 333 (403)
......|+|||++|+..+.+ .. |.+||+.+++.. .+... .......|+|||++|+.++.++. +++++++
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~-I~~~dl~~g~~~-~Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQH-IAKQDLATGGVQ-VLTDT---FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCce-EEEEECCCCCeE-EeCCC---CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 66788999999999876543 24 888999888754 34321 22346789999999999887765 5666664
Q ss_pred c
Q 015650 334 V 334 (403)
Q Consensus 334 ~ 334 (403)
.
T Consensus 407 G 407 (429)
T PRK03629 407 G 407 (429)
T ss_pred C
Confidence 3
No 194
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.71 E-value=6.9e-16 Score=134.58 Aligned_cols=243 Identities=15% Similarity=0.203 Sum_probs=153.5
Q ss_pred eEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEE----EEecccCcceeEEEE---eeeCCeEEEeeCCCCCCCCCceEEE
Q 015650 88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIF----RRDFERGGGIGVVEM---LFRCNILALVGGGPDPQYPLNKVMI 160 (403)
Q Consensus 88 i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~----~~~~~~~~~~~v~~~---~~~~~~~~~~s~~~d~~~~~~~i~i 160 (403)
+....++-.|.+|+..-.+.+.+|+........ .+.+. +..-...++ .-.+.+.-+..+-.. |.|.+
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~-gt~P~cHdfn~~~a~~~g~dllIGf~t-----Gqvq~ 199 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYK-GTSPTCHDFNSFTATPKGLDLLIGFTT-----GQVQL 199 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhccc-CCCCceecccccccCCCCcceEEeecc-----CceEE
Confidence 444555556788887766678888876422211 11121 111111111 112233333333333 78888
Q ss_pred EECCCCceeEEEe-----cCCceeEEEEec--CceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650 161 WDDHQSRCIGELS-----FRSEVRSVKLRR--DRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (403)
Q Consensus 161 wd~~~~~~~~~~~-----~~~~i~~~~~~~--~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (403)
.|....+..+.+. .+..++++.|-| ++.+++ .+|.+++||..-. ..... ......++++.+.+
T Consensus 200 idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~------~~~t~--p~~~~~k~~~~f~i 271 (636)
T KOG2394|consen 200 IDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV------CGATA--PSYQALKDGDQFAI 271 (636)
T ss_pred ecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc------ccCCC--CcccccCCCCeeEE
Confidence 8866543322222 357899999988 455666 6999999996210 00001 11112233333222
Q ss_pred EeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEe
Q 015650 232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311 (403)
Q Consensus 232 ~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~ 311 (403)
.. + .. ......+..+..-.+.|...+|+|||++||+.+.||. +||||..+.+++..++. .-+...|++|
T Consensus 272 ~t-~-ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt~eLlg~mkS--YFGGLLCvcW 340 (636)
T KOG2394|consen 272 LT-S-KS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDTQELLGVMKS--YFGGLLCVCW 340 (636)
T ss_pred ee-e-ec------cccCCccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccHHHHHHHHHh--hccceEEEEE
Confidence 21 0 00 0111333344444568999999999999999999999 99999988887766664 3478999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEecc
Q 015650 312 SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH 390 (403)
Q Consensus 312 s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~ 390 (403)
||||+||++|++|..|.||.+...+. +++-++|...|+.|+|.|
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~erRV-----------------------------------VARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFEERRV-----------------------------------VARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cCCccEEEecCCcceEEEEEeccceE-----------------------------------EEeccccccceeeEeecc
Confidence 99999999999999999999998873 667788888899999975
No 195
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=9.1e-14 Score=116.20 Aligned_cols=232 Identities=14% Similarity=0.181 Sum_probs=168.8
Q ss_pred CeEEEEEcCCCCEEEEEc-CCc--EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650 87 TLLHISFNQDHGCFAAGT-DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (403)
Q Consensus 87 ~i~~i~~s~d~~~l~~~~-~~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~ 163 (403)
.|--+-|+. .++|..+ ++. +++++......++...+. ..|.++.++.+.+.++-- ..|+|||+
T Consensus 48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp----t~IL~VrmNr~RLvV~Le--------e~IyIydI 113 (391)
T KOG2110|consen 48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFFP----TSILAVRMNRKRLVVCLE--------ESIYIYDI 113 (391)
T ss_pred EEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEecC----CceEEEEEccceEEEEEc--------ccEEEEec
Confidence 355555654 4665554 444 999998887777766664 678888887776665554 56999999
Q ss_pred CCCceeEEEe----cCCceeEEEEecCceEEE-----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEee
Q 015650 164 HQSRCIGELS----FRSEVRSVKLRRDRIIVV-----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (403)
Q Consensus 164 ~~~~~~~~~~----~~~~i~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (403)
++.+++.++. +...+.++.+++.+.+++ ..|.|.+||..+.+.+..+..|.+.+.+++|+++|. ++|++
T Consensus 114 ~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~--llATA 191 (391)
T KOG2110|consen 114 KDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT--LLATA 191 (391)
T ss_pred ccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCC--EEEEe
Confidence 9999999887 344567777777778888 368999999999999999999999999999999987 56665
Q ss_pred CCccCeEEEEEccCCc-eeEEeec--CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc-------------------
Q 015650 235 GLQKGQVRVEHYASKR-TKFIMAH--DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT------------------- 292 (403)
Q Consensus 235 g~~d~~i~v~d~~~~~-~~~~~~~--~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~------------------- 292 (403)
......|||+.+..+. +..+... ...|.+++|+|++.+|++.+..++ |+||.+....
T Consensus 192 SeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-VHiFKL~~~~~~~~~~p~~~~~~~~~~sk 270 (391)
T KOG2110|consen 192 SEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-VHIFKLEKVSNNPPESPTAGTSWFGKVSK 270 (391)
T ss_pred ccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-EEEEEecccccCCCCCCCCCCcccchhhh
Confidence 5455568999998855 3444322 346889999999999999999999 9999875311
Q ss_pred ------------------EEEEEecCCCcc--cEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 293 ------------------LLQEVRRGADRA--EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 293 ------------------~~~~~~~~~~~~--~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
...+.+.. ..+ .+..+.-.+...++..++.||.++.|.++-.+
T Consensus 271 ~~~sylps~V~~~~~~~R~FAt~~l~-~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~ 333 (391)
T KOG2110|consen 271 AATSYLPSQVSSVLDQSRKFATAKLP-ESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKE 333 (391)
T ss_pred hhhhhcchhhhhhhhhccceeEEEcc-CCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCC
Confidence 00011110 111 23333333567789999999999999998653
No 196
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.5e-15 Score=136.84 Aligned_cols=261 Identities=13% Similarity=0.187 Sum_probs=181.5
Q ss_pred EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC---eEEEeeCCCCCCCCCceEEEEECCCC
Q 015650 90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN---ILALVGGGPDPQYPLNKVMIWDDHQS 166 (403)
Q Consensus 90 ~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~~~d~~~~~~~i~iwd~~~~ 166 (403)
.-.|++|+++++....+.|.||...++.+. ..+. +|...+..+.+.+. ..++.+...+ |.|++||...+
T Consensus 21 ~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i--~~l~-~~~a~l~s~~~~~~~~~~~~~~~~sl~-----G~I~vwd~~~~ 92 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTGNFVKVYSTATGECI--TSLE-DHTAPLTSVIVLPSSENANYLIVCSLD-----GTIRVWDWSDG 92 (792)
T ss_pred ccccccCCcEEEEeeCCEEEEEecchHhhh--hhcc-cccCccceeeecCCCccceEEEEEecC-----ccEEEecCCCc
Confidence 357899999999999999999999988776 5665 78888888877653 2566677777 99999999999
Q ss_pred ceeEEEecCCceeEEEEecC----ceEE-EecC--------------eEEEEEcCCc--eeeeEeeccCCCceeEEEeeC
Q 015650 167 RCIGELSFRSEVRSVKLRRD----RIIV-VLEQ--------------KIFVYNFADL--KLLHQIETIANPKGLCAVSQG 225 (403)
Q Consensus 167 ~~~~~~~~~~~i~~~~~~~~----~~~~-~~d~--------------~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~ 225 (403)
.+++++....++..+.+.|. ...+ +... +++-+.+.+. .....+..+.. -..+..++.
T Consensus 93 ~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ 171 (792)
T KOG1963|consen 93 ELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNS 171 (792)
T ss_pred EEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCC
Confidence 99999986666666655331 1111 1111 1222222110 01111111211 245666776
Q ss_pred CCeEEEEeeCCccCeEEEEEccCCceeE-----EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC--Cc--EEEE
Q 015650 226 VGSLVLVCPGLQKGQVRVEHYASKRTKF-----IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD--GT--LLQE 296 (403)
Q Consensus 226 ~~~~~~~~~g~~d~~i~v~d~~~~~~~~-----~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~--~~--~~~~ 296 (403)
+....++ .+..+.+|....+.... -..|.-.+++.+++|.++++|+|..||. |.+|.--. +. ....
T Consensus 172 ge~~~i~----~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGr-I~vw~d~~~~~~~~t~t~ 246 (792)
T KOG1963|consen 172 GEFKGIV----HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGR-ILVWRDFGSSDDSETCTL 246 (792)
T ss_pred ceEEEEE----EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCc-EEEEeccccccccccceE
Confidence 6655444 45678888887744211 1246667899999999999999999999 99996322 22 2233
Q ss_pred EecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEE
Q 015650 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQF 376 (403)
Q Consensus 297 ~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (403)
+. .|...|++++|++||.+|++|+..|.+.+|.+.+++. .+||+
T Consensus 247 lH--WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-----------------------qfLPR----------- 290 (792)
T KOG1963|consen 247 LH--WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-----------------------QFLPR----------- 290 (792)
T ss_pred EE--ecccccceeEEecCCceEeecccceEEEEEeecCCCc-----------------------ccccc-----------
Confidence 44 4668999999999999999999999999999999983 12331
Q ss_pred EEeCCCceEEEeccCCCEEEEEccCC
Q 015650 377 RLVEGSPYIVAFGHQKNTVVILGMDG 402 (403)
Q Consensus 377 ~~~~~~~~~~~fs~d~~~l~~~~~dG 402 (403)
-.+++..+.+|||+...++..+|.
T Consensus 291 --Lgs~I~~i~vS~ds~~~sl~~~DN 314 (792)
T KOG1963|consen 291 --LGSPILHIVVSPDSDLYSLVLEDN 314 (792)
T ss_pred --cCCeeEEEEEcCCCCeEEEEecCc
Confidence 134677889999999888887774
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.69 E-value=5.5e-16 Score=135.15 Aligned_cols=205 Identities=13% Similarity=0.124 Sum_probs=159.7
Q ss_pred EEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCc
Q 015650 99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSE 177 (403)
Q Consensus 99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~ 177 (403)
++++.+|+.+.|.+-. ...++.+. .|...+.+-.|+++|..+++.+.| |.|++|. ++|.+..++. ...+
T Consensus 78 ~~i~s~DGkf~il~k~---~rVE~sv~-AH~~A~~~gRW~~dGtgLlt~GED-----G~iKiWS-rsGMLRStl~Q~~~~ 147 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKS---ARVERSIS-AHAAAISSGRWSPDGAGLLTAGED-----GVIKIWS-RSGMLRSTVVQNEES 147 (737)
T ss_pred EEEEcCCceEEEeccc---chhhhhhh-hhhhhhhhcccCCCCceeeeecCC-----ceEEEEe-ccchHHHHHhhcCce
Confidence 3444446667776532 22335555 799999999999999999999999 9999999 6666555554 7889
Q ss_pred eeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEe
Q 015650 178 VRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM 255 (403)
Q Consensus 178 i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~ 255 (403)
|.|++|.|+..-++ ..+.+.|=-+.....+-..+.|.+-+-++.|++..+ ++++ |++|-..++||-....+..-.
T Consensus 148 v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~--lI~s-gGED~kfKvWD~~G~~Lf~S~ 224 (737)
T KOG1524|consen 148 IRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN--IIAS-GGEDFRFKIWDAQGANLFTSA 224 (737)
T ss_pred eEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCcccc--ceee-cCCceeEEeecccCcccccCC
Confidence 99999999876555 567888888777777777889999888888888766 5665 559999999999988888888
Q ss_pred ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEe
Q 015650 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL 332 (403)
Q Consensus 256 ~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~ 332 (403)
.|+.+|++++|+|+ +.++.++.+ + ++ +... ..+.|..++||+||..++.|+..|.|.+=.+
T Consensus 225 ~~ey~ITSva~npd-~~~~v~S~n-t-~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 225 AEEYAITSVAFNPE-KDYLLWSYN-T-AR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred hhccceeeeeeccc-cceeeeeee-e-ee------------ecCC-CccceEEEEEcCCCceeeccccCceEEEeee
Confidence 99999999999999 666666654 3 45 2221 4478999999999999999999998765444
No 198
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=8.8e-15 Score=135.06 Aligned_cols=213 Identities=11% Similarity=0.097 Sum_probs=143.2
Q ss_pred EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCc
Q 015650 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (403)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 187 (403)
|.+||.+..... .+. .+...+....|+|++..++..+.... ...|++||+.+++.............+.|+|||
T Consensus 186 l~i~D~~g~~~~---~lt-~~~~~v~~p~wSpDg~~la~~s~~~~--~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 186 LQVADSDGYNPQ---TIL-RSAEPILSPAWSPDGKKLAYVSFERG--RSAIYVQDLATGQRELVASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEECCCCCCce---Eee-cCCCccccccCCCCCCEEEEEecCCC--CcEEEEEECCCCCEEEeccCCCCccCceECCCC
Confidence 788887644332 232 35567889999999877665442200 157999999888764433355556688999999
Q ss_pred eEEE--e--cC--eEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccC--eEEEEEccCCceeEEeecCC
Q 015650 188 IIVV--L--EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMAHDS 259 (403)
Q Consensus 188 ~~~~--~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~v~d~~~~~~~~~~~~~~ 259 (403)
..++ . ++ .|++||+.+++.. .+..+.......+|+++++.+++.+ ..++ .|+++++.++....+..+..
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~s--d~~g~~~iy~~dl~~g~~~~lt~~g~ 336 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTS--DRGGRPQIYRVAASGGSAERLTFQGN 336 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEE--CCCCCceEEEEECCCCCeEEeecCCC
Confidence 8665 1 33 6999999887643 3444444446689999998776654 2333 47777777766666554445
Q ss_pred ceEEEEEcCCCCEEEEEeCCC---cEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC---CcEEEEEee
Q 015650 260 RIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK---GTVHVFNLK 333 (403)
Q Consensus 260 ~i~~~~~sp~g~~l~s~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d---g~v~iwd~~ 333 (403)
....++|+|||++|+..+.++ . |.+||+.+++.. .+.. ........|+|||++|+..+.+ +.|++++++
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~-I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYR-IAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCcee-EEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 556789999999998765433 5 899999887765 3432 2234567999999988776643 346666664
Q ss_pred c
Q 015650 334 V 334 (403)
Q Consensus 334 ~ 334 (403)
.
T Consensus 412 g 412 (433)
T PRK04922 412 G 412 (433)
T ss_pred C
Confidence 3
No 199
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=1.8e-14 Score=132.56 Aligned_cols=173 Identities=15% Similarity=0.116 Sum_probs=118.2
Q ss_pred ceEEEEECCCCceeEEE-ecCCceeEEEEecCceEEE--e----cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650 156 NKVMIWDDHQSRCIGEL-SFRSEVRSVKLRRDRIIVV--L----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~--~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (403)
..|.++|.. +...+.+ .+...+.+.+|+|||+.++ . ...|++||+.+++... +...........|+|+++.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 578888864 4444444 4778899999999998777 2 2369999998886543 3333445567899999998
Q ss_pred EEEEeeCCccCeEEEE--EccCCceeEEeecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEE--cCCCcEEEEEecCCCc
Q 015650 229 LVLVCPGLQKGQVRVE--HYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFN--TLDGTLLQEVRRGADR 303 (403)
Q Consensus 229 ~~~~~~g~~d~~i~v~--d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd--~~~~~~~~~~~~~~~~ 303 (403)
+++.. +.++...|| |+.++....+..+........|+|||++|+..+. ++. ..||. +.+++... +.. ..
T Consensus 254 la~~~--~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~-~~Iy~~~~~~g~~~~-lt~--~g 327 (427)
T PRK02889 254 LAVAL--SRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA-PQIYRMPASGGAAQR-VTF--TG 327 (427)
T ss_pred EEEEE--ccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCC-cEEEEEECCCCceEE-Eec--CC
Confidence 76654 345655555 5556666666666666677899999999887665 345 56664 44554332 221 12
Q ss_pred ccEEEEEeCCCCCEEEEEeCCC---cEEEEEeecCC
Q 015650 304 AEIYSLAFSSNAQWLAVSSDKG---TVHVFNLKVNS 336 (403)
Q Consensus 304 ~~v~~l~~s~d~~~l~s~~~dg---~v~iwd~~~~~ 336 (403)
.......|+|||++|+..+.++ .|++||+.+++
T Consensus 328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence 2345688999999998777554 59999998876
No 200
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.68 E-value=1.1e-13 Score=128.08 Aligned_cols=231 Identities=22% Similarity=0.354 Sum_probs=181.4
Q ss_pred CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc-eeEEEec-C-CceeEEEE-ecCce-EEE----ecCeEE
Q 015650 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-CIGELSF-R-SEVRSVKL-RRDRI-IVV----LEQKIF 197 (403)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~-~~~~~~~-~-~~i~~~~~-~~~~~-~~~----~d~~i~ 197 (403)
.+...+..+.+...+..++.++.+ +.+.+|+...+. .+..+.. . ..+..+.+ .+++. ++. .|+.+.
T Consensus 63 ~~~~~i~~~~~~~~~~~~~~~~~d-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 63 GHEDSITSIAFSPDGELLLSGSSD-----GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eccceEEEEEECCCCcEEEEecCC-----CcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 577889999999998888888877 999999998886 6666652 3 36777777 77776 444 288999
Q ss_pred EEEcCC-ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCC-EEE
Q 015650 198 VYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQ-LLA 274 (403)
Q Consensus 198 i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~-~l~ 274 (403)
+||... ......+..|...+..+++++++. +++..+..++.+++|+... .....+..|...+.+++|+|++. +++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence 999987 778888889999999999999988 3333222499999999997 55666777999999999999998 555
Q ss_pred EEeCCCcEEEEEEcCCCcEEE-EEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcc
Q 015650 275 TSSTKGTLVRIFNTLDGTLLQ-EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT 353 (403)
Q Consensus 275 s~~~dg~~i~iwd~~~~~~~~-~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (403)
+++.|+. |++||...+..+. .+.. |...+ -..|++++..+++++.|+.+++|++.....
T Consensus 216 ~~~~d~~-i~~wd~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---------------- 275 (466)
T COG2319 216 SGSSDGT-IRLWDLSTGKLLRSTLSG--HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS---------------- 275 (466)
T ss_pred EecCCCc-EEEEECCCCcEEeeecCC--CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----------------
Confidence 5589999 9999998888877 4654 44443 238999998999999999999999998772
Q ss_pred cccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650 354 SSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG 402 (403)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG 402 (403)
.+.....|...+..+.|.|++..+++++.|+
T Consensus 276 ------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~ 306 (466)
T COG2319 276 ------------------LLRTLSGHSSSVLSVAFSPDGKLLASGSSDG 306 (466)
T ss_pred ------------------EEEEEecCCccEEEEEECCCCCEEEEeeCCC
Confidence 0111244567888889999999998888775
No 201
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2.2e-15 Score=124.41 Aligned_cols=181 Identities=14% Similarity=0.253 Sum_probs=134.7
Q ss_pred ceEEEEECCCCceeEEEe-cCCceeEEEEec----CceEEE-ecCeEEEEEcCCceeeeEeeccCCC-ceeEEEeeCCCe
Q 015650 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRR----DRIIVV-LEQKIFVYNFADLKLLHQIETIANP-KGLCAVSQGVGS 228 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~----~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 228 (403)
|.|++||..+++.+..++ ++..+..+.|.. ++.+.+ +||+|++||++.......+.....+ ...+++.-+-+.
T Consensus 50 gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~ 129 (376)
T KOG1188|consen 50 GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK 129 (376)
T ss_pred CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC
Confidence 899999999999999999 888888888865 344444 7999999999986554444322222 234455444334
Q ss_pred EEEEeeCC----ccCeEEEEEccCCce---eEEeecCCceEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCc----EEEE
Q 015650 229 LVLVCPGL----QKGQVRVEHYASKRT---KFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGT----LLQE 296 (403)
Q Consensus 229 ~~~~~~g~----~d~~i~v~d~~~~~~---~~~~~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~~~~----~~~~ 296 (403)
.++++ |. .+-.+.+||+|..+. .....|...|++++|+| +.++|++|+.||. |.|||++... ++.+
T Consensus 130 ~ii~~-GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL-vnlfD~~~d~EeDaL~~v 207 (376)
T KOG1188|consen 130 NIIAC-GTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL-VNLFDTKKDNEEDALLHV 207 (376)
T ss_pred CeEEe-ccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce-EEeeecCCCcchhhHHHh
Confidence 35554 32 467899999998443 33568999999999999 5678999999999 9999986532 2333
Q ss_pred EecCCCcccEEEEEeCCCC-CEEEEEeCCCcEEEEEeecCCCCCCC
Q 015650 297 VRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARS 341 (403)
Q Consensus 297 ~~~~~~~~~v~~l~~s~d~-~~l~s~~~dg~v~iwd~~~~~~~~~~ 341 (403)
+. +...|..+.|..++ +.|.+-+..++..+|+++.+.++..+
T Consensus 208 iN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 208 IN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred hc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence 43 55789999999877 45788889999999999999865444
No 202
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=6.8e-14 Score=110.53 Aligned_cols=197 Identities=11% Similarity=0.152 Sum_probs=144.8
Q ss_pred eEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC---------Cc-eeEEEe-cCCceeEEEEecCceEEEecCeEEEE
Q 015650 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ---------SR-CIGELS-FRSEVRSVKLRRDRIIVVLEQKIFVY 199 (403)
Q Consensus 131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~---------~~-~~~~~~-~~~~i~~~~~~~~~~~~~~d~~i~i~ 199 (403)
.|.+-+++|...+++.+..+ |.|.+..++. ++ .+...+ |..+|..++|..+-.+.+.||.|+-|
T Consensus 12 tvf~qa~sp~~~~l~agn~~-----G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw 86 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLF-----GDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGW 86 (325)
T ss_pred HHHHHhhCCcceEEEEecCC-----CeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEe
Confidence 34555678888899999988 9999998753 22 233334 99999999999665555589999999
Q ss_pred EcCCcee------eeEee--c-----cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCcee-EEeecCCceEEEE
Q 015650 200 NFADLKL------LHQIE--T-----IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFA 265 (403)
Q Consensus 200 d~~~~~~------~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~-~~~~~~~~i~~~~ 265 (403)
..+.... +.... . .-..|..+.+.|..+.++++. .|+.++-||+++++++ .+.+|.+.|.++.
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag---GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG---GDGVIYQVDLEDGRIQREYRGHTDYVHSVV 163 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec---CCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence 8764321 11111 1 123467788888888776663 6899999999998864 5789999999998
Q ss_pred EcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc--------ccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650 266 LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR--------AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 266 ~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~--------~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
--.....+++|++||+ +||||+++++++..+....+. ..|.+++- +..+|++|+ ...+.+|+++..+.
T Consensus 164 ~R~~~~qilsG~EDGt-vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~ 239 (325)
T KOG0649|consen 164 GRNANGQILSGAEDGT-VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSES 239 (325)
T ss_pred ecccCcceeecCCCcc-EEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCc
Confidence 8554556789999999 999999999999887653222 24555555 456887765 55799999999886
Q ss_pred CC
Q 015650 338 SA 339 (403)
Q Consensus 338 ~~ 339 (403)
..
T Consensus 240 t~ 241 (325)
T KOG0649|consen 240 TC 241 (325)
T ss_pred eE
Confidence 43
No 203
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=6.4e-15 Score=135.18 Aligned_cols=243 Identities=16% Similarity=0.159 Sum_probs=172.2
Q ss_pred CCCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEEcCCCeeEE---EEecccCcceeEEEEeeeCCeE--EEeeCCCCCCCC
Q 015650 82 SSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFREIF---RRDFERGGGIGVVEMLFRCNIL--ALVGGGPDPQYP 154 (403)
Q Consensus 82 ~~~~~~i~~i~~s~d~-~~l~~~~~~~-i~iw~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~~~ 154 (403)
......|+|+.|+|.. .+|+.|..+| |.+||+....... .......|...++.+.|..+-. -+++++.|
T Consensus 239 ~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD---- 314 (555)
T KOG1587|consen 239 LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD---- 314 (555)
T ss_pred EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecC----
Confidence 3356789999999965 5566666555 9999997655421 1122246888999999866433 37777778
Q ss_pred CceEEEEECCCCce-eEE-----E-------ecCCceeEEEEecC--ceEEE--ecCeEEEEEcCCc--------eeeeE
Q 015650 155 LNKVMIWDDHQSRC-IGE-----L-------SFRSEVRSVKLRRD--RIIVV--LEQKIFVYNFADL--------KLLHQ 209 (403)
Q Consensus 155 ~~~i~iwd~~~~~~-~~~-----~-------~~~~~i~~~~~~~~--~~~~~--~d~~i~i~d~~~~--------~~~~~ 209 (403)
|.|+.|+++.-.. ... . .....+++++|.+. ..+++ .+|.|+.-+.... +....
T Consensus 315 -G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~ 393 (555)
T KOG1587|consen 315 -GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST 393 (555)
T ss_pred -CcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccc
Confidence 9999998765322 111 1 12345788888773 34444 3677776443321 11334
Q ss_pred eeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEcc--CCceeEEeecCCceEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 015650 210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIF 286 (403)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~--~~~~~~~~~~~~~i~~~~~sp~g-~~l~s~~~dg~~i~iw 286 (403)
+..|.+++..+.++|-...+++.+ | |..++||... ...+..+..+...+++++|||-. ..++++..||. |.||
T Consensus 394 ~~~h~g~v~~v~~nPF~~k~fls~-g--DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~iW 469 (555)
T KOG1587|consen 394 FITHIGPVYAVSRNPFYPKNFLSV-G--DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDIW 469 (555)
T ss_pred ccccCcceEeeecCCCccceeeee-c--cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eehh
Confidence 556788999999999988877665 3 8999999876 35555666777789999999954 57788888999 9999
Q ss_pred EcCCC--cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650 287 NTLDG--TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (403)
Q Consensus 287 d~~~~--~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~ 335 (403)
|+... +++.+... +....+.+.|++.|+.|++|...|++++|++...
T Consensus 470 DLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 470 DLLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred hhhccccCCcccccc--cccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 99754 34444433 3467788899999999999999999999999654
No 204
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.7e-14 Score=125.77 Aligned_cols=245 Identities=16% Similarity=0.206 Sum_probs=167.1
Q ss_pred CCCCCCeEEEEEcCCCCEEE-EEcCC-cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650 82 SSPPPTLLHISFNQDHGCFA-AGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (403)
Q Consensus 82 ~~~~~~i~~i~~s~d~~~l~-~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~ 159 (403)
-.++..-+.|..+|||+|+. +|.-. .|++||+......+.+.+. ...|.-...+.|...++--..| .+|.
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlD---ae~V~feiLsDD~SK~v~L~~D-----R~Ie 119 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLD---AEVVDFEILSDDYSKSVFLQND-----RTIE 119 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccc---ccceeEEEeccchhhheEeecC-----ceee
Confidence 34667778899999999975 45444 4999999988877766664 2222223334444333333333 4554
Q ss_pred EEECCCCceeEEEecCCceeEEEEec-C-ceEEE-ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCC
Q 015650 160 IWDDHQSRCIGELSFRSEVRSVKLRR-D-RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (403)
Q Consensus 160 iwd~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 236 (403)
+-. .-| .-..+.-+..-.+++++. . ..+++ +...|+-++++.|+.+..+......+.++.+++... ++++ |.
T Consensus 120 fHa-k~G-~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg--Lla~-Gt 194 (703)
T KOG2321|consen 120 FHA-KYG-RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG--LLAC-GT 194 (703)
T ss_pred ehh-hcC-eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccc--eEEe-cc
Confidence 432 111 111122233334555553 2 23333 677899999999999999988888899999988754 4555 66
Q ss_pred ccCeEEEEEccCCce-eEE------eecCC-----ceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcc
Q 015650 237 QKGQVRVEHYASKRT-KFI------MAHDS-----RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA 304 (403)
Q Consensus 237 ~d~~i~v~d~~~~~~-~~~------~~~~~-----~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~ 304 (403)
.+|.|..||.+.+.. ..+ ..|.+ .|+++.|+.+|-.+++|+.+|. |.|||++..+++..-. |...-
T Consensus 195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa~~pl~~kd-h~~e~ 272 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRASKPLLVKD-HGYEL 272 (703)
T ss_pred cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEcccCCceeecc-cCCcc
Confidence 899999999998543 222 22333 4999999999999999999999 9999999998875444 34556
Q ss_pred cEEEEEeCCCC--CEEEEEeCCCcEEEEEeecCCCCCCCC
Q 015650 305 EIYSLAFSSNA--QWLAVSSDKGTVHVFNLKVNSGSARSE 342 (403)
Q Consensus 305 ~v~~l~~s~d~--~~l~s~~~dg~v~iwd~~~~~~~~~~~ 342 (403)
+|..+.|.+.+ ..|++. +...++|||-.+++....++
T Consensus 273 pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE 311 (703)
T ss_pred ceeeecccccCCCceEEec-chHHhhhcccccCCceeecc
Confidence 89999997753 345544 56689999999999755544
No 205
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.67 E-value=1.3e-14 Score=117.79 Aligned_cols=146 Identities=10% Similarity=0.208 Sum_probs=107.6
Q ss_pred EEEEecCceEEE--ec-----------CeEEEEEcCC-ceeeeEeec-cCCCceeEEEeeCCCeEEEEeeCCccCeEEEE
Q 015650 180 SVKLRRDRIIVV--LE-----------QKIFVYNFAD-LKLLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE 244 (403)
Q Consensus 180 ~~~~~~~~~~~~--~d-----------~~i~i~d~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~ 244 (403)
.+.|+++|.+|+ .+ +...+|.++. ......+.. ..++|..++|+|+++.++++. |..++.|.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAKVTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEE-ccCCcccEEE
Confidence 466777776655 11 2244444422 233444433 244699999999999876664 6567899999
Q ss_pred EccCCceeEEeecCCceEEEEEcCCCCEEEEEeC---CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 015650 245 HYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS 321 (403)
Q Consensus 245 d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~---dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~ 321 (403)
|++...+..+. ...+..+.|+|+|++|++++. .|. |.+||+++.+.+.+.. | ..++.++|+|||++|+++
T Consensus 89 d~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~~~i~~~~---~-~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 89 DVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKKKKISTFE---H-SDATDVEWSPDGRYLATA 161 (194)
T ss_pred cCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCCEEeeccc---c-CcEEEEEEcCCCCEEEEE
Confidence 99866655553 567789999999999999874 467 9999999988887776 4 357899999999999988
Q ss_pred eC------CCcEEEEEee
Q 015650 322 SD------KGTVHVFNLK 333 (403)
Q Consensus 322 ~~------dg~v~iwd~~ 333 (403)
.. |+.++||++.
T Consensus 162 ~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EeccceeccccEEEEEec
Confidence 63 7889999995
No 206
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=4.3e-14 Score=130.67 Aligned_cols=217 Identities=12% Similarity=0.055 Sum_probs=148.7
Q ss_pred EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCc
Q 015650 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (403)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 187 (403)
|.++|.+..... .+. .+...+....|+|++..++..+... ....|++||+.+++......+...+....|+|||
T Consensus 184 l~~~d~dg~~~~---~lt-~~~~~v~~p~wSpDG~~lay~s~~~--g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 184 LAIMDQDGANVR---YLT-DGSSLVLTPRFSPNRQEITYMSYAN--GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred EEEECCCCCCcE---EEe-cCCCCeEeeEECCCCCEEEEEEecC--CCCEEEEEECCCCcEEEeecCCCcccCcEECCCC
Confidence 777776544332 232 4666889999999987666543210 0168999999888764433366778889999999
Q ss_pred eEEE--e--c--CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCce
Q 015650 188 IIVV--L--E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI 261 (403)
Q Consensus 188 ~~~~--~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i 261 (403)
..++ . + ..|++||+.+++. ..+..+........|+|+++.+++++.......|+++|+.++..+.+..+...+
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~ 336 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRY 336 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcc
Confidence 8765 2 3 3588889987765 344444445567899999998776652223357888898887777776666667
Q ss_pred EEEEEcCCCCEEEEEeCCC---cEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC------CcEEEEEe
Q 015650 262 ACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK------GTVHVFNL 332 (403)
Q Consensus 262 ~~~~~sp~g~~l~s~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d------g~v~iwd~ 332 (403)
....|+|||++|+....++ . |.+||+..+.. +.+.. ...+..+.|+|||+.|+..+.+ ..|+++|+
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~-i~~~d~~~~~~-~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFS-IGVMKPDGSGE-RILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceE-EEEEECCCCce-EeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 7889999999998766532 4 88899765543 44442 2346788999999998766542 25677777
Q ss_pred ecCC
Q 015650 333 KVNS 336 (403)
Q Consensus 333 ~~~~ 336 (403)
+.++
T Consensus 412 ~g~~ 415 (435)
T PRK05137 412 TGRN 415 (435)
T ss_pred CCCc
Confidence 5544
No 207
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.3e-13 Score=109.00 Aligned_cols=234 Identities=15% Similarity=0.216 Sum_probs=158.0
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCee------EEEEecc----cCcceeEEEEeeeCCeEEEeeCCC
Q 015650 80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE------IFRRDFE----RGGGIGVVEMLFRCNILALVGGGP 149 (403)
Q Consensus 80 ~~~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~------~~~~~~~----~~~~~~v~~~~~~~~~~~~~s~~~ 149 (403)
....|.++|+.++|. ..+|.+|+|+.|+-|..+...+ ..+.... ...--.|.++...|...-++.++.
T Consensus 57 ~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG 134 (325)
T KOG0649|consen 57 PEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG 134 (325)
T ss_pred eccccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC
Confidence 347899999999998 4588888887799998754332 1111111 011224556666654333333334
Q ss_pred CCCCCCceEEEEECCCCceeEEEe-cCCceeEEEE-ecCceEEE--ecCeEEEEEcCCceeeeEeeccCCC--------c
Q 015650 150 DPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKL-RRDRIIVV--LEQKIFVYNFADLKLLHQIETIANP--------K 217 (403)
Q Consensus 150 d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~-~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~--------~ 217 (403)
| +.++-||+++|+..++++ |.+.|.++.- +..+.++. .||++++||+++++.++.+....++ -
T Consensus 135 D-----~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~ 209 (325)
T KOG0649|consen 135 D-----GVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGK 209 (325)
T ss_pred C-----eEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCc
Confidence 5 999999999999999999 9999999998 55666666 6999999999999998887543321 1
Q ss_pred eeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 015650 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV 297 (403)
Q Consensus 218 ~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~ 297 (403)
.+.++.-+.+ +++|.| ...+.+|.++..+...+..-...+..+.|.. +.+++++..+. |.-|.+ +|.....+
T Consensus 210 wigala~~ed--WlvCGg--Gp~lslwhLrsse~t~vfpipa~v~~v~F~~--d~vl~~G~g~~-v~~~~l-~Gvl~a~i 281 (325)
T KOG0649|consen 210 WIGALAVNED--WLVCGG--GPKLSLWHLRSSESTCVFPIPARVHLVDFVD--DCVLIGGEGNH-VQSYTL-NGVLQANI 281 (325)
T ss_pred eeEEEeccCc--eEEecC--CCceeEEeccCCCceEEEecccceeEeeeec--ceEEEeccccc-eeeeee-ccEEEEec
Confidence 2234444444 667733 4789999999988777777778888899954 45677776666 999976 56555555
Q ss_pred ecCCCcccEEEEEeCCCC-CEEEEEeCCCcEEEE
Q 015650 298 RRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVF 330 (403)
Q Consensus 298 ~~~~~~~~v~~l~~s~d~-~~l~s~~~dg~v~iw 330 (403)
... ....++..|+..- +.|-.++....+.|+
T Consensus 282 p~~--s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 282 PVE--STACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred cCC--ccceeeecccCCceEEEEecccceeeeee
Confidence 542 2345555554332 345556666777665
No 208
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.66 E-value=5.3e-14 Score=115.87 Aligned_cols=131 Identities=13% Similarity=0.093 Sum_probs=93.1
Q ss_pred EEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEe-eCCCCCCCCCceEEEEECCCCcee
Q 015650 91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALV-GGGPDPQYPLNKVMIWDDHQSRCI 169 (403)
Q Consensus 91 i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-s~~~d~~~~~~~i~iwd~~~~~~~ 169 (403)
..|+|+|+++|+..+-.+.|-|.++.+.. +.+. --..|.-+.|..+..++. ....+ +.|.+|++...+-.
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~--qlf~--cldki~yieW~ads~~ilC~~yk~-----~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLH--QLFL--CLDKIVYIEWKADSCHILCVAYKD-----PKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHH--HHHH--HHHHhhheeeeccceeeeeeeecc-----ceEEEEEeecceeE
Confidence 57999999999999888888887765543 2221 234566677777665544 44445 89999999998888
Q ss_pred EEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650 170 GELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (403)
Q Consensus 170 ~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (403)
..+. ...++..++|+|||+.+. .+-.|.+|.+.+.+... ++-....+..++|+++++...+
T Consensus 85 ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai 150 (447)
T KOG4497|consen 85 CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAI 150 (447)
T ss_pred EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeee
Confidence 8888 788999999999997666 47899999998765432 2222333455666666654333
No 209
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.65 E-value=4.5e-16 Score=142.34 Aligned_cols=198 Identities=14% Similarity=0.238 Sum_probs=154.0
Q ss_pred CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcC
Q 015650 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA 202 (403)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~ 202 (403)
+|...|.+..|...+.+++++++| ..++||..+++.++..+. |.+.|+.++.+.++.+++ .|..|++|.+.
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd-----~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDD-----RLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred hhhhheeeeeeccccceEeecCcc-----ceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 788899999999999999999999 999999999999999998 999999999999988888 47889999999
Q ss_pred CceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEE----------------------------
Q 015650 203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI---------------------------- 254 (403)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~---------------------------- 254 (403)
++.++..+.+|.+.|+.++|+|-. + .+.||++++||.+-......
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~------s-ss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA------S-SSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc------c-CCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence 999999999999999999999964 2 35899999999883111000
Q ss_pred ---eecCCceEEEEEcCCCCEEEE-----------EeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEE-E
Q 015650 255 ---MAHDSRIACFALTQDGQLLAT-----------SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL-A 319 (403)
Q Consensus 255 ---~~~~~~i~~~~~sp~g~~l~s-----------~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l-~ 319 (403)
......+.+++|...+-.+++ +-.+-. +++|++.+|.....+.+ |...+..|.++|-+..+ .
T Consensus 336 ~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~-~~vwnl~~g~l~H~l~g--hsd~~yvLd~Hpfn~ri~m 412 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHR-LCVWNLYTGQLLHNLMG--HSDEVYVLDVHPFNPRIAM 412 (1113)
T ss_pred CCcccccchhhHhhhhccceEEEeccccccccceeeeeeeE-eeeeecccchhhhhhcc--cccceeeeeecCCCcHhhh
Confidence 000011122222222222333 223444 78899888888777775 66788999999976654 5
Q ss_pred EEeCCCcEEEEEeecCCCCC
Q 015650 320 VSSDKGTVHVFNLKVNSGSA 339 (403)
Q Consensus 320 s~~~dg~v~iwd~~~~~~~~ 339 (403)
+++.||...|||+-.+.++.
T Consensus 413 sag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 413 SAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred hccCCCceEeeecccCCcce
Confidence 88999999999999988643
No 210
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=2e-13 Score=120.17 Aligned_cols=263 Identities=10% Similarity=0.147 Sum_probs=170.2
Q ss_pred eEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC-----CceEEEEE
Q 015650 88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP-----LNKVMIWD 162 (403)
Q Consensus 88 i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~-----~~~i~iwd 162 (403)
.+..+++++|+++|.+.+..++|++......++ ... . ..+.++.|+|.+.++.+-..-..+. .-.+.+|+
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~l-t~~---~-~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVL-CVE---L-KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEE-Eec---c-ceeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 567789999999999999999999988776332 222 2 2889999999888877644321111 13577999
Q ss_pred CCCCceeEEEe--cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe----e
Q 015650 163 DHQSRCIGELS--FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC----P 234 (403)
Q Consensus 163 ~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 234 (403)
++++.....+. .... ++..|+.|..+.+ ..+.+++|++...+.+. -+.+...+..+.++|.+....+++ .
T Consensus 112 vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred eccceehhheehhhhcC-cccccccchhhhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCC
Confidence 98866555555 2222 5778888877776 57777888766522111 112233444444444433222222 0
Q ss_pred CCccCeEEEE---------------------------------------------------------EccCCceeEEeec
Q 015650 235 GLQKGQVRVE---------------------------------------------------------HYASKRTKFIMAH 257 (403)
Q Consensus 235 g~~d~~i~v~---------------------------------------------------------d~~~~~~~~~~~~ 257 (403)
++.-..++|| ++.+.....--..
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k 269 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK 269 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC
Confidence 1122233333 3332222222234
Q ss_pred CCceEEEEEcCCCCEEEE--EeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC---CCcEEEEEe
Q 015650 258 DSRIACFALTQDGQLLAT--SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD---KGTVHVFNL 332 (403)
Q Consensus 258 ~~~i~~~~~sp~g~~l~s--~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~---dg~v~iwd~ 332 (403)
.++|.++.|+|+|+-+++ |-.-.. +.|||+ .+.++..+. .++=+++-|+|.|++|+.++. .|.|-|||+
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAk-vtifnl-r~~~v~df~----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAK-VTIFNL-RGKPVFDFP----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccce-EEEEcC-CCCEeEeCC----CCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 789999999999987754 444556 999997 577777775 356788999999999998874 578999999
Q ss_pred ecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEcc
Q 015650 333 KVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM 400 (403)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~ 400 (403)
.+.+.+.++. . ..-+.+.|+|||+++++++.
T Consensus 344 ~n~K~i~~~~-----------------------------------a--~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 344 PNRKLIAKFK-----------------------------------A--ANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred cchhhccccc-----------------------------------c--CCceEEEEcCCCcEEEEEec
Confidence 9977533321 1 12345899999999999864
No 211
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=7.5e-14 Score=128.47 Aligned_cols=204 Identities=14% Similarity=0.119 Sum_probs=131.9
Q ss_pred EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCc
Q 015650 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (403)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 187 (403)
|.++|.+.... +.+. .+...+....|+|++..++..+... ....|++||+.+++..........+....|+|||
T Consensus 178 L~~~D~dG~~~---~~l~-~~~~~v~~p~wSPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 178 LQISDADGQNA---QSAL-SSPEPIISPAWSPDGTKLAYVSFES--KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDG 251 (427)
T ss_pred EEEECCCCCCc---eEec-cCCCCcccceEcCCCCEEEEEEccC--CCcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence 66666543322 2222 3556788999999987766543220 0146999999988765443355667789999999
Q ss_pred eEEE--e--cCe--EEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEE--ccCCceeEEeecCC
Q 015650 188 IIVV--L--EQK--IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH--YASKRTKFIMAHDS 259 (403)
Q Consensus 188 ~~~~--~--d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d--~~~~~~~~~~~~~~ 259 (403)
..++ . ++. |+++|+..++ ...+..+........|+|+++.+++++ ..++...+|. +.++....+..+..
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s--~~~g~~~Iy~~~~~~g~~~~lt~~g~ 328 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTS--DRGGAPQIYRMPASGGAAQRVTFTGS 328 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEe--cCCCCcEEEEEECCCCceEEEecCCC
Confidence 8766 2 554 5555665544 444544444456688999999876654 2345555554 45555544443344
Q ss_pred ceEEEEEcCCCCEEEEEeCCC---cEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 015650 260 RIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG 325 (403)
Q Consensus 260 ~i~~~~~sp~g~~l~s~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg 325 (403)
......|+|||++|+..+.++ . |.+||+.+++... +.. ......+.|+|||++|+.++.++
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~-I~v~d~~~g~~~~-lt~---~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFK-LYVQDLATGQVTA-LTD---TTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEE-EEEEECCCCCeEE-ccC---CCCccCceECCCCCEEEEEEecC
Confidence 455688999999998776554 5 9999998887543 332 12346789999999988777443
No 212
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.65 E-value=1.7e-13 Score=126.69 Aligned_cols=176 Identities=14% Similarity=0.133 Sum_probs=126.6
Q ss_pred ceEEEEECCCCceeEEEecCCceeEEEEecCceEEEe------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (403)
..|.++|...........+...+....|+|||+.++. ...|++||+.+++... +.........++|+|+++.+
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 5688888754444333346667889999999998882 2479999998875443 23344455678999999887
Q ss_pred EEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCC---cEEEEEEcCCCcEEEEEecCCCcccE
Q 015650 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEI 306 (403)
Q Consensus 230 ~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~v 306 (403)
++......+..|++||+.++....+..+........|+|||++|+..+..+ . |+++|+.+++... +.. +...+
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~-iy~~d~~~~~~~~-l~~--~~~~~ 324 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQ-IYMMDADGGEVRR-LTF--RGGYN 324 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCce-EEEEECCCCCEEE-eec--CCCCc
Confidence 665433334569999998887777766666566789999999988766532 4 8888887776543 332 33567
Q ss_pred EEEEeCCCCCEEEEEeCCC---cEEEEEeecCC
Q 015650 307 YSLAFSSNAQWLAVSSDKG---TVHVFNLKVNS 336 (403)
Q Consensus 307 ~~l~~s~d~~~l~s~~~dg---~v~iwd~~~~~ 336 (403)
..+.|+|||++|+.++.++ .|.+||+.++.
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 7889999999999888765 78888887754
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.1e-13 Score=115.45 Aligned_cols=227 Identities=18% Similarity=0.178 Sum_probs=152.3
Q ss_pred CCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCe-EEEeeCCCCCCCCCceEEEEE
Q 015650 85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWD 162 (403)
Q Consensus 85 ~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~i~iwd 162 (403)
+-.+..++|++.--.+|++. |+.|++|+-..... ..++......+.+++|.|.+ ..++.+.+ +-|+||.
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p---t~Lks~sQrnvtclawRPlsaselavgCr------~gIciW~ 168 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP---TKLKSVSQRNVTCLAWRPLSASELAVGCR------AGICIWS 168 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC---ceecchhhcceeEEEeccCCcceeeeeec------ceeEEEE
Confidence 34678899999766667766 77799999765222 33332355688999998853 23444444 5799997
Q ss_pred CCCC----c--------eeEEEe--cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCCCceeEEEee
Q 015650 163 DHQS----R--------CIGELS--FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ 224 (403)
Q Consensus 163 ~~~~----~--------~~~~~~--~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (403)
.... . ....++ ...+|+++.|++||..++ .|..|.|||..++..+.......+.+..+.|+|
T Consensus 169 ~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP 248 (445)
T KOG2139|consen 169 DSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP 248 (445)
T ss_pred cCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC
Confidence 5321 1 122333 346899999999999888 378999999999887766645567778999999
Q ss_pred CCCeEEEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC----C--------
Q 015650 225 GVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD----G-------- 291 (403)
Q Consensus 225 ~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~----~-------- 291 (403)
+++.++.++ -|+..++|.... ..........+.|...+|+|+|++|...+.... ++|.+.- .
T Consensus 249 dgd~lfaAt---~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~ 323 (445)
T KOG2139|consen 249 DGDVLFAAT---CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSI 323 (445)
T ss_pred CCCEEEEec---ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccc
Confidence 999766554 789999995443 333333334558999999999998876655443 4554421 0
Q ss_pred cE---EEEEe-----cC--CCcccEEEEEeCCCCCEEEEEeCCC
Q 015650 292 TL---LQEVR-----RG--ADRAEIYSLAFSSNAQWLAVSSDKG 325 (403)
Q Consensus 292 ~~---~~~~~-----~~--~~~~~v~~l~~s~d~~~l~s~~~dg 325 (403)
+. +..+. .+ ...+.+.+|+|.|.|.+||+.-..+
T Consensus 324 k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 324 KRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred eeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 00 11110 00 0135788999999999999876443
No 214
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.63 E-value=1.9e-14 Score=114.93 Aligned_cols=234 Identities=12% Similarity=0.089 Sum_probs=151.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC-----Ce----EEEeeCCCCCCC
Q 015650 83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-----NI----LALVGGGPDPQY 153 (403)
Q Consensus 83 ~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~----~~~~s~~~d~~~ 153 (403)
.|...|+.+.--|+++++.-|-|..+.+|++....-..... ..+.++.|.+ +. ..++.-++. .
T Consensus 54 ~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~S------i~~nslgFCrfSl~~~~k~~eqll~yp~rg-s- 125 (323)
T KOG0322|consen 54 FGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHS------IVVNSLGFCRFSLVKKPKNSEQLLEYPSRG-S- 125 (323)
T ss_pred hccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEee------eeccccccccceeccCCCcchhheecCCcc-c-
Confidence 57788999999998776666667779999997654443332 2333333322 11 112222111 0
Q ss_pred CCceEEEEECCCCceeEEEe-----cCCceeEEEEec-CceE-EE----ecCeEEEEEcCCceee----------eEeec
Q 015650 154 PLNKVMIWDDHQSRCIGELS-----FRSEVRSVKLRR-DRII-VV----LEQKIFVYNFADLKLL----------HQIET 212 (403)
Q Consensus 154 ~~~~i~iwd~~~~~~~~~~~-----~~~~i~~~~~~~-~~~~-~~----~d~~i~i~d~~~~~~~----------~~~~~ 212 (403)
..+.+-|......++... ..+.+.+..+.. ++.. ++ .+|.+.+||+.++..+ .....
T Consensus 126 --de~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~as 203 (323)
T KOG0322|consen 126 --DETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNAS 203 (323)
T ss_pred --chhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhh
Confidence 112222222212222221 234566665433 2332 22 4899999999987333 33345
Q ss_pred cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC--ce---eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEE
Q 015650 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RT---KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (403)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~--~~---~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd 287 (403)
|..++..+.+.+.-+.-+ .|+.+..+..|.+... .+ ..+.-.+..+..+.+-||+++||+++.|+. ||||+
T Consensus 204 h~qpvlsldyas~~~rGi---sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~R-iRVys 279 (323)
T KOG0322|consen 204 HKQPVLSLDYASSCDRGI---SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHR-IRVYS 279 (323)
T ss_pred ccCcceeeeechhhcCCc---CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCc-EEEEE
Confidence 666777777665332211 2445667888887652 22 223334556889999999999999999999 99999
Q ss_pred cCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEe
Q 015650 288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL 332 (403)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~ 332 (403)
.++..++..++- |...|++++|+||...+|.++.|++|-+|++
T Consensus 280 wrtl~pLAVLky--Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 280 WRTLNPLAVLKY--HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eccCCchhhhhh--hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999986 7799999999999999999999999999986
No 215
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.63 E-value=2.5e-15 Score=133.62 Aligned_cols=141 Identities=15% Similarity=0.252 Sum_probs=111.8
Q ss_pred ecCeEEEEEcCC-ceeee-Eeec--cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC--------ceeEEeecCC
Q 015650 192 LEQKIFVYNFAD-LKLLH-QIET--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--------RTKFIMAHDS 259 (403)
Q Consensus 192 ~d~~i~i~d~~~-~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~--------~~~~~~~~~~ 259 (403)
..|.|-||+++. |++-. .+.+ ....+..+.|.|-....+.+ +.+||.|++|.+..+ ....+..|..
T Consensus 601 ~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAV--a~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 601 SGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAV--ATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred CCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeee--cccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 378999999986 33211 1111 23456667777755544332 248999999998762 2356789999
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650 260 RIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 260 ~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
.|+++.|+| ....|++++.|-+ |++||+.+++....+.+ |...|.+++|||||+.+|+.+.||+|++|+-++.+.
T Consensus 679 KI~slRfHPLAadvLa~asyd~T-i~lWDl~~~~~~~~l~g--HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDST-IELWDLANAKLYSRLVG--HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccce-eeeeehhhhhhhheecc--CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence 999999999 4568899999999 99999999999888886 779999999999999999999999999999988763
No 216
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=6.2e-13 Score=118.74 Aligned_cols=189 Identities=14% Similarity=0.154 Sum_probs=123.9
Q ss_pred CEEEEE-c-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecC
Q 015650 98 GCFAAG-T-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR 175 (403)
Q Consensus 98 ~~l~~~-~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~ 175 (403)
.++++. . ++.|.|.|..+.+.. ..+..+. .....+.+++|+.+++..++| |.|.++|+.+++.+.+++..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~--~~i~~~~-~~h~~~~~s~Dgr~~yv~~rd-----g~vsviD~~~~~~v~~i~~G 77 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVV--ARIPTGG-APHAGLKFSPDGRYLYVANRD-----GTVSVIDLATGKVVATIKVG 77 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEE--EEEE-ST-TEEEEEE-TT-SSEEEEEETT-----SEEEEEETTSSSEEEEEE-S
T ss_pred cEEEEEecCCCEEEEEECCCCeEE--EEEcCCC-CceeEEEecCCCCEEEEEcCC-----CeEEEEECCcccEEEEEecC
Confidence 344433 3 455999998887665 4554222 235567789988777767778 99999999999999999977
Q ss_pred CceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEeeccCC-------CceeEEEeeCCCeEEEEeeCCccCeEEEE
Q 015650 176 SEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIAN-------PKGLCAVSQGVGSLVLVCPGLQKGQVRVE 244 (403)
Q Consensus 176 ~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~d~~i~v~ 244 (403)
....++++++||++++ ..+.+.++|.++.+.++.+..... .+..+..++....+++.. -+.+.|.+.
T Consensus 78 ~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l--kd~~~I~vV 155 (369)
T PF02239_consen 78 GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL--KDTGEIWVV 155 (369)
T ss_dssp SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE--TTTTEEEEE
T ss_pred CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE--ccCCeEEEE
Confidence 7889999999999888 378999999999999988865322 334455566665544443 345788888
Q ss_pred EccCCc-e-eEEeecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcEEEEE
Q 015650 245 HYASKR-T-KFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEV 297 (403)
Q Consensus 245 d~~~~~-~-~~~~~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~ 297 (403)
|+.... . ..............|+|+++|++.+.. ... |-++|.++++.+..+
T Consensus 156 dy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~-i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 156 DYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK-IAVIDTKTGKLVALI 210 (369)
T ss_dssp ETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE-EEEEETTTTEEEEEE
T ss_pred EeccccccceeeecccccccccccCcccceeeecccccce-eEEEeeccceEEEEe
Confidence 876633 2 223334556788999999999877544 445 888888877665544
No 217
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1e-12 Score=121.67 Aligned_cols=175 Identities=19% Similarity=0.140 Sum_probs=123.1
Q ss_pred eEEEEECCCCceeEEEecCCceeEEEEecCceEEE--e--c--CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L--E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (403)
Q Consensus 157 ~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (403)
.|.++|...+.......+...+....|+|||..++ . + ..|++||+.+++... +...........|+|+++.++
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEE
Confidence 58888877555444445777889999999998876 2 2 369999998876533 322334445689999999877
Q ss_pred EEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCC-C--cEEEEEEcCCCcEEEEEecCCCcccEE
Q 015650 231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-G--TLVRIFNTLDGTLLQEVRRGADRAEIY 307 (403)
Q Consensus 231 ~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d-g--~~i~iwd~~~~~~~~~~~~~~~~~~v~ 307 (403)
+......+..|++||+.++....+..+........|+|||+.|+..+.. + . |+++|+.+++..+.... .....
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~-iy~~d~~~g~~~~lt~~---~~~~~ 334 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQ-IYKVNVNGGRAERVTFV---GNYNA 334 (430)
T ss_pred EEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCce-EEEEECCCCCEEEeecC---CCCcc
Confidence 6553323347888999998877777666667778999999988766643 2 4 77888887775433321 12344
Q ss_pred EEEeCCCCCEEEEEeCC-C--cEEEEEeecCC
Q 015650 308 SLAFSSNAQWLAVSSDK-G--TVHVFNLKVNS 336 (403)
Q Consensus 308 ~l~~s~d~~~l~s~~~d-g--~v~iwd~~~~~ 336 (403)
...|+|||++|+..+.+ + .|.+||+.+++
T Consensus 335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred ceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 67899999999877643 3 47888888765
No 218
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.62 E-value=1.4e-11 Score=110.16 Aligned_cols=241 Identities=19% Similarity=0.210 Sum_probs=156.9
Q ss_pred CCeEEEEEcCCCCEEEEEcC----C-cEEEEEcCCC--eeEEEEecccCcceeEEEEeeeCCeEEEeeCC-CCCCCCCce
Q 015650 86 PTLLHISFNQDHGCFAAGTD----H-GFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGG-PDPQYPLNK 157 (403)
Q Consensus 86 ~~i~~i~~s~d~~~l~~~~~----~-~i~iw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~-~d~~~~~~~ 157 (403)
.....++++|++++|.+..+ . +|..|.+... +........ ........+..++++.+++.+. .+ |.
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-~~g~~p~~i~~~~~g~~l~vany~~-----g~ 110 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-SGGSSPCHIAVDPDGRFLYVANYGG-----GS 110 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE-ESSSCEEEEEECTTSSEEEEEETTT-----TE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec-cCCCCcEEEEEecCCCEEEEEEccC-----Ce
Confidence 34566889999999988764 2 3889988764 433333332 1334445677777776655543 24 89
Q ss_pred EEEEECCC-CceeEE---Eec-----------CCceeEEEEecCceEEE-e---cCeEEEEEcCCce--ee--eEeec-c
Q 015650 158 VMIWDDHQ-SRCIGE---LSF-----------RSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLK--LL--HQIET-I 213 (403)
Q Consensus 158 i~iwd~~~-~~~~~~---~~~-----------~~~i~~~~~~~~~~~~~-~---d~~i~i~d~~~~~--~~--~~~~~-~ 213 (403)
|.++++.. +.+... +.+ .....++.++|++++++ . ...|++|++.... +. ..+.. .
T Consensus 111 v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~ 190 (345)
T PF10282_consen 111 VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP 190 (345)
T ss_dssp EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST
T ss_pred EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc
Confidence 99999987 433222 212 24567899999998777 2 5689999997644 21 22221 2
Q ss_pred CCCceeEEEeeCCCeEEEEeeCCccCeEEEEEcc--CCceeEE---ee------cCCceEEEEEcCCCCEEEEEeCCCcE
Q 015650 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKFI---MA------HDSRIACFALTQDGQLLATSSTKGTL 282 (403)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~--~~~~~~~---~~------~~~~i~~~~~sp~g~~l~s~~~dg~~ 282 (403)
...-..+.|+++++.+|++. ..++.|.++++. .+....+ .. .......|+++|||++|+++......
T Consensus 191 G~GPRh~~f~pdg~~~Yv~~--e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s 268 (345)
T PF10282_consen 191 GSGPRHLAFSPDGKYAYVVN--ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS 268 (345)
T ss_dssp TSSEEEEEE-TTSSEEEEEE--TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred CCCCcEEEEcCCcCEEEEec--CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence 23346899999999888775 578899999988 3333222 11 11257889999999999887754433
Q ss_pred EEEEEcC--CCc--EEEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCcEEEEEeecCC
Q 015650 283 VRIFNTL--DGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNS 336 (403)
Q Consensus 283 i~iwd~~--~~~--~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~~ 336 (403)
|.+|++. +++ .+..+.. .....+.++++|+|++|+++. .++.|.+|+++...
T Consensus 269 I~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 269 ISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp EEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred EEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 9999983 343 3334443 224589999999999998887 67799999997554
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=2e-15 Score=129.45 Aligned_cols=200 Identities=15% Similarity=0.198 Sum_probs=168.1
Q ss_pred ceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcCCcee
Q 015650 129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKL 206 (403)
Q Consensus 129 ~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~ 206 (403)
..+-..+.+..+|..++.+++. |.|..+|..++++..++...+.|.++.|-.+..+++ -.+.++||| ..|..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrK-----GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD-~~GtE 202 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRK-----GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYD-NNGTE 202 (545)
T ss_pred ccCCeeeeecCCccEEEecCCc-----cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEec-CCCcE
Confidence 3455778899999999999998 999999999999999999889999999998888877 478999999 56777
Q ss_pred eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 015650 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI 285 (403)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~i 285 (403)
++.++.+. .+.-+.|-|. ++++++ ++..|.++.-|+..+.+ ..+....+.+..|+-+|-...+-+|..+|+ |.+
T Consensus 203 lHClk~~~-~v~rLeFLPy--HfLL~~-~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt-VSl 277 (545)
T KOG1272|consen 203 LHCLKRHI-RVARLEFLPY--HFLLVA-ASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT-VSL 277 (545)
T ss_pred EeehhhcC-chhhhcccch--hheeee-cccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCce-EEe
Confidence 77776543 4566666665 344554 55889999999998664 456666788889999999999999999999 999
Q ss_pred EEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCC
Q 015650 286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARS 341 (403)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~ 341 (403)
|.-.+.+++..+.. |.++|.+|++.++|+|++|.+.|..|+|||++......++
T Consensus 278 WSP~skePLvKiLc--H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 278 WSPNSKEPLVKILC--HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred cCCCCcchHHHHHh--cCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence 99988888877776 7899999999999999999999999999999998755444
No 220
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.61 E-value=4.7e-15 Score=122.00 Aligned_cols=179 Identities=15% Similarity=0.176 Sum_probs=139.7
Q ss_pred EEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeE
Q 015650 134 EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQ 209 (403)
Q Consensus 134 ~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~ 209 (403)
-..|+|++.++++..+ -.+.|-|.++-+..+.+.--..|.-+.|..|..++. -++.|.+|++...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~------yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR------YRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeee------eEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE
Confidence 3568999999999887 477888887777666555556777889998877665 388999999998888888
Q ss_pred eeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCc--EEEEEE
Q 015650 210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFN 287 (403)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~--~i~iwd 287 (403)
++....++..++|+|+++++++.+ .-+-.|.+|.+.++....+.-.+..+..++|+|||++.+.++.... -+.|..
T Consensus 87 Ideg~agls~~~WSPdgrhiL~ts--eF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~ 164 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTS--EFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS 164 (447)
T ss_pred eccCCCcceeeeECCCcceEeeee--cceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence 888888999999999999876654 5788999999999988888776777899999999999988776432 033443
Q ss_pred cCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe
Q 015650 288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS 322 (403)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~ 322 (403)
.+....++.+.. ..-..+.+.|+|||..||+-.
T Consensus 165 c~~W~ll~~f~~--dT~DltgieWsPdg~~laVwd 197 (447)
T KOG4497|consen 165 CKAWILLKEFKL--DTIDLTGIEWSPDGNWLAVWD 197 (447)
T ss_pred hHHHHHHHhcCC--CcccccCceECCCCcEEEEec
Confidence 444555666664 345678999999999988753
No 221
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.3e-14 Score=127.10 Aligned_cols=238 Identities=13% Similarity=0.146 Sum_probs=158.9
Q ss_pred CCCccccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeC--CeEEEeeCCCCC
Q 015650 75 SPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDP 151 (403)
Q Consensus 75 ~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~ 151 (403)
..++..+.+|++.|+|+.|+.||.+|++|+|+. +.|||.-..+.+ ..+..+|...|.+..|-| +...++++..|
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll--hsI~TgHtaNIFsvKFvP~tnnriv~sgAgD- 116 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL--HSISTGHTANIFSVKFVPYTNNRIVLSGAGD- 116 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhccee--eeeecccccceeEEeeeccCCCeEEEeccCc-
Confidence 445567899999999999999999999999887 999998755544 555558999999999976 56778888888
Q ss_pred CCCCceEEEEECCCC----------ceeEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCCcee-e--------
Q 015650 152 QYPLNKVMIWDDHQS----------RCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKL-L-------- 207 (403)
Q Consensus 152 ~~~~~~i~iwd~~~~----------~~~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~-~-------- 207 (403)
..|+++|+... +....+. |...|..++..|++-.++ .||+|+-||++.... .
T Consensus 117 ----k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~ 192 (758)
T KOG1310|consen 117 ----KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI 192 (758)
T ss_pred ----ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH
Confidence 99999998742 2233344 888999999999874333 599999999986211 1
Q ss_pred -eEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE------EeecCCceEEEE-EcCCCCEEEEEeCC
Q 015650 208 -HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF------IMAHDSRIACFA-LTQDGQLLATSSTK 279 (403)
Q Consensus 208 -~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~------~~~~~~~i~~~~-~sp~g~~l~s~~~d 279 (403)
..+....-...++.++|..... ++. |..|...++||.+...... .........|+. |+|++- ...+
T Consensus 193 l~ny~~~lielk~ltisp~rp~~-laV-GgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~ 266 (758)
T KOG1310|consen 193 LVNYNPQLIELKCLTISPSRPYY-LAV-GGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQ 266 (758)
T ss_pred HHHhchhhheeeeeeecCCCCce-EEe-cCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----cCcc
Confidence 1111112234578888877654 444 5589999999965422110 000111122221 233221 1112
Q ss_pred CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCC
Q 015650 280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE 342 (403)
Q Consensus 280 g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 342 (403)
|. ....+ ..++-+.|+|+|.-|++.-....|+++|+..++....+.
T Consensus 267 gn-----------~~~~~------~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 267 GN-----------LDRYI------TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred cc-----------cccce------eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 21 10011 246778999999887776666789999999988755544
No 222
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=6.6e-14 Score=114.89 Aligned_cols=208 Identities=15% Similarity=0.189 Sum_probs=153.0
Q ss_pred cCCceeEEEEecCceEEE---ecCeEEEEEcCCc---eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEcc
Q 015650 174 FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL---KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA 247 (403)
Q Consensus 174 ~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~ 247 (403)
...+|++.+|++|+..++ ....|.||..... +..+++..|...++.+.|+|..+.+. + ++.|..-+||...
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv--t-cs~drnayVw~~~ 85 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV--T-CSHDRNAYVWTQP 85 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee--E-ccCCCCccccccC
Confidence 568999999999999888 3668999987653 56788899999999999999987643 2 3589999999984
Q ss_pred C----CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE--E-EEEecCCCcccEEEEEeCCCCCEEEE
Q 015650 248 S----KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--L-QEVRRGADRAEIYSLAFSSNAQWLAV 320 (403)
Q Consensus 248 ~----~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~--~-~~~~~~~~~~~v~~l~~s~d~~~l~s 320 (403)
. ++...+..++...+++.|+|.++.+|+|+.-.. |.||-++...- + +.++ ..+.+.|+++.|+|++-+|++
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~-isVcy~E~ENdWWVsKhik-kPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARL-ISVCYYEQENDWWVSKHIK-KPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccE-EEEEEEecccceehhhhhC-CccccceeeeeccCCcceecc
Confidence 3 445667788999999999999999999999888 99987654321 1 1122 225688999999999999999
Q ss_pred EeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEcc
Q 015650 321 SSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM 400 (403)
Q Consensus 321 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~ 400 (403)
|+.|+..++|..--.....+..+..+ .+.+.| +.++ .+.....+.+..+.|+|+|+.|+-.+.
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pW------gsk~PF-G~lm----------~E~~~~ggwvh~v~fs~sG~~lawv~H 226 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPW------GSKMPF-GQLM----------SEASSSGGWVHGVLFSPSGNRLAWVGH 226 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCC------ccCCcH-HHHH----------HhhccCCCceeeeEeCCCCCEeeEecC
Confidence 99999999998755443222111100 111111 1122 112233567888999999999999998
Q ss_pred CCC
Q 015650 401 DGR 403 (403)
Q Consensus 401 dG~ 403 (403)
|++
T Consensus 227 ds~ 229 (361)
T KOG1523|consen 227 DST 229 (361)
T ss_pred CCc
Confidence 874
No 223
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=2.3e-14 Score=125.90 Aligned_cols=233 Identities=14% Similarity=0.074 Sum_probs=170.0
Q ss_pred CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC--------CceeEEEe-cCCceeEEEEecCceEEE---ecC
Q 015650 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ--------SRCIGELS-FRSEVRSVKLRRDRIIVV---LEQ 194 (403)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~--------~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~ 194 (403)
.|...+..+.|.+-.-.+++++.+ |.|++|++.. -+++.+|. |.++|.|+++.+++..++ .||
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed-----~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASED-----GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccc-----cchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 577788888898888899999999 9999999932 14677777 999999999999999888 499
Q ss_pred eEEEEEcCCc----------eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEee--cCCceE
Q 015650 195 KIFVYNFADL----------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--HDSRIA 262 (403)
Q Consensus 195 ~i~i~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~--~~~~i~ 262 (403)
+|+.|++... .....+.+|.+.+..++++...+.++. | +.||++++|+.......++.. ..+.-.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls-c--s~DgTvr~w~~~~~~~~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS-C--SSDGTVRLWEPTEESPCTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceee-e--cCCceEEeeccCCcCccccCCccccCCcc
Confidence 9999966421 233456789999999999998877443 3 479999999988766543332 223345
Q ss_pred EEEEcCCC-CEEEEEeCCCcEEEEEEcCCCcEEEEEecCCC-----cccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 263 CFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD-----RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 263 ~~~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~-----~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
++.|-... .++++...-+. -.++++.....+..+..... ...+..+.++|.+.+.+++..|+.|+++|..+++
T Consensus 444 svd~~ss~~a~~~~s~~~~~-~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGY-TSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred eEeeccchhHhhhhhccccc-ccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 55553322 22222222332 33445555554444443211 1357889999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
... ....|...++++++-|+|-+|++++.||+
T Consensus 523 ~l~-----------------------------------s~~a~~~svtslai~~ng~~l~s~s~d~s 554 (577)
T KOG0642|consen 523 ILH-----------------------------------SMVAHKDSVTSLAIDPNGPYLMSGSHDGS 554 (577)
T ss_pred cch-----------------------------------heeeccceecceeecCCCceEEeecCCce
Confidence 522 24556778999999999999999999985
No 224
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=2e-13 Score=128.42 Aligned_cols=241 Identities=16% Similarity=0.262 Sum_probs=163.3
Q ss_pred CCCCeEEEEEcC--CCCEEEEEcCCc-EEEEEcCCC---eeEEEEecc-------cCcceeEEEEeeeC-CeEEEeeCCC
Q 015650 84 PPPTLLHISFNQ--DHGCFAAGTDHG-FRIYNCDPF---REIFRRDFE-------RGGGIGVVEMLFRC-NILALVGGGP 149 (403)
Q Consensus 84 ~~~~i~~i~~s~--d~~~l~~~~~~~-i~iw~~~~~---~~~~~~~~~-------~~~~~~v~~~~~~~-~~~~~~s~~~ 149 (403)
....|+.+.+-. |..++.+|+++| ||||+--.. +..+..... ...... .-+.|.. .|..+++|+
T Consensus 1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd- 1185 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTG-LVVDWQQQSGHLLVTGD- 1185 (1387)
T ss_pred CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCC-eeeehhhhCCeEEecCC-
Confidence 455788888844 456778887666 999974211 111111111 111111 2334444 355555554
Q ss_pred CCCCCCceEEEEECCCCceeEEEe--cCCceeEEEEec-CceEEE---ecCeEEEEEcCCc---eeeeEeeccCCC--ce
Q 015650 150 DPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADL---KLLHQIETIANP--KG 218 (403)
Q Consensus 150 d~~~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~---~~~~~~~~~~~~--~~ 218 (403)
- ..|+|||....+.+..+. ....|+++.-+- .|..++ .||.|++||.+.. ..+...+.|... |.
T Consensus 1186 ~-----r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv 1260 (1387)
T KOG1517|consen 1186 V-----RSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIV 1260 (1387)
T ss_pred e-----eEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccce
Confidence 3 799999999888888877 455667666544 345555 6999999998763 345566677766 67
Q ss_pred eEEEeeCCCeEEEEeeCCccCeEEEEEccCCce---eEEeecC--C-ceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc
Q 015650 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT---KFIMAHD--S-RIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292 (403)
Q Consensus 219 ~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~---~~~~~~~--~-~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~ 292 (403)
.+.+.+.|-..++ +|+.+|.|++||++.... ..+..|. + ..+++..+++...+|+|+. +. |+||++ .|+
T Consensus 1261 ~~slq~~G~~elv--Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~-ikIy~~-~G~ 1335 (1387)
T KOG1517|consen 1261 HLSLQRQGLGELV--SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL-IKIYSL-SGE 1335 (1387)
T ss_pred eEEeecCCCccee--eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce-EEEEec-Chh
Confidence 7777776655333 367999999999998322 2233333 3 5999999999999999998 77 999997 455
Q ss_pred EEEEEecC-----CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 293 LLQEVRRG-----ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 293 ~~~~~~~~-----~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
.+..++.. ...+.+.+++|+|..-+||+|+.|.+|.||....++
T Consensus 1336 ~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1336 QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 55444421 123568999999998899999999999999887765
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=9.8e-13 Score=109.85 Aligned_cols=248 Identities=13% Similarity=0.164 Sum_probs=162.7
Q ss_pred cceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe--cCCceeEEEEecCce-EEE--ecCeEEEEEcC
Q 015650 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRI-IVV--LEQKIFVYNFA 202 (403)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~-~~~--~d~~i~i~d~~ 202 (403)
....+..++|++....++.+..| -.|++|+-.. ++...++ ....|++++|-|.+. .++ ..+-|.+|...
T Consensus 97 s~~dlr~~aWhqH~~~fava~nd-----dvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s 170 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHIIAFAVATND-----DVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDS 170 (445)
T ss_pred hhcceeeEeechhhhhhhhhccC-----cEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcC
Confidence 34567778888888888888888 8999999555 6666676 567899999999643 333 57889999865
Q ss_pred C----cee--------eeEe--eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEe-ecCCceEEEEEc
Q 015650 203 D----LKL--------LHQI--ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALT 267 (403)
Q Consensus 203 ~----~~~--------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~-~~~~~i~~~~~s 267 (403)
. ++. .+.+ .+| .+|..+.|.+|+..+ +++.-.+..|.|||..++....+. ...+.++-+.||
T Consensus 171 ~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l--~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS 247 (445)
T KOG2139|consen 171 RTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTIL--VTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS 247 (445)
T ss_pred cccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEE--eecccCcceEEEEcCCCCCcccccccCCCceeeEEEc
Confidence 3 111 1111 222 567888888887654 444456889999999997776665 455678899999
Q ss_pred CCCCEEEEEeCCCcEEEEEEcC-CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCC
Q 015650 268 QDGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRST 346 (403)
Q Consensus 268 p~g~~l~s~~~dg~~i~iwd~~-~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 346 (403)
|||.+|.++.-|+. .++|+.. +....+-.. ..+.|....|+|+|+.|+... .|.-++|.+...+.-........
T Consensus 248 Pdgd~lfaAt~dav-frlw~e~q~wt~erw~l---gsgrvqtacWspcGsfLLf~~-sgsp~lysl~f~~~~~~~~~~~~ 322 (445)
T KOG2139|consen 248 PDGDVLFAATCDAV-FRLWQENQSWTKERWIL---GSGRVQTACWSPCGSFLLFAC-SGSPRLYSLTFDGEDSVFLRPQS 322 (445)
T ss_pred CCCCEEEEecccce-eeeehhcccceecceec---cCCceeeeeecCCCCEEEEEE-cCCceEEEEeecCCCccccCccc
Confidence 99999999999999 9999543 344444444 346899999999999876554 33456677765553221110000
Q ss_pred CCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEcc
Q 015650 347 SDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM 400 (403)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~ 400 (403)
..... . ..-+++... .+--++-.+...+++|.|.|++||+.-.
T Consensus 323 ~k~~l------l-iaDL~e~ti----~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 323 IKRVL------L-IADLQEVTI----CAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred ceeee------e-eccchhhhh----hcCcccccCccceeeECCCCCEEEEEEc
Confidence 00000 0 001110000 0001222467889999999999998654
No 226
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=3.8e-13 Score=113.36 Aligned_cols=248 Identities=15% Similarity=0.142 Sum_probs=169.5
Q ss_pred CCCCCCeEEEEEcCCCC--EEEEE-cCCcEEEEEcCCCeeEEEE----ecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650 82 SSPPPTLLHISFNQDHG--CFAAG-TDHGFRIYNCDPFREIFRR----DFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (403)
Q Consensus 82 ~~~~~~i~~i~~s~d~~--~l~~~-~~~~i~iw~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~ 154 (403)
......|..++|.-|++ .|... .+..+..+.+......... ... .....|..+......+.++..+
T Consensus 52 ~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~-l~~~~I~gl~~~dg~Litc~~s------ 124 (412)
T KOG3881|consen 52 VDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVS-LGTKSIKGLKLADGTLITCVSS------ 124 (412)
T ss_pred cchhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccc-cccccccchhhcCCEEEEEecC------
Confidence 33456788888976664 34444 2444666665543322111 121 3445666666655544444333
Q ss_pred CceEEEEECCCCc----eeEEEecCCceeEEEEecCceEEE-e---c--CeEEEEEcCCceeeeEeeccCC---------
Q 015650 155 LNKVMIWDDHQSR----CIGELSFRSEVRSVKLRRDRIIVV-L---E--QKIFVYNFADLKLLHQIETIAN--------- 215 (403)
Q Consensus 155 ~~~i~iwd~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~-~---d--~~i~i~d~~~~~~~~~~~~~~~--------- 215 (403)
|.+.+|..+.+. .+..+.....+..+.-.+....++ + . +.+.+||++..+.+.+-+...+
T Consensus 125 -G~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPv 203 (412)
T KOG3881|consen 125 -GNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPV 203 (412)
T ss_pred -CcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeee
Confidence 899999987542 344444456677777777655555 2 3 4689999998765544332211
Q ss_pred CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC--ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 015650 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293 (403)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~--~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~ 293 (403)
+++.+.|-+......+++ +..-+.+++||.+.+ ++..+.-...+++++...|+|+++++|..-+. +..||++.++.
T Consensus 204 W~tdi~Fl~g~~~~~fat-~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~kl 281 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFAT-ITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGGKL 281 (412)
T ss_pred eeccceecCCCCCceEEE-EecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCcee
Confidence 234466666533333443 346799999999874 45666677889999999999999999999999 99999999998
Q ss_pred EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCC
Q 015650 294 LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR 340 (403)
Q Consensus 294 ~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~ 340 (403)
+.....+ ..+.|++|..+|.+++|++++-|..|+|+|+++.+.+..
T Consensus 282 ~g~~~kg-~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 282 LGCGLKG-ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred eccccCC-ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 8773332 568999999999999999999999999999999775443
No 227
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.57 E-value=1.5e-12 Score=120.37 Aligned_cols=206 Identities=11% Similarity=0.073 Sum_probs=140.0
Q ss_pred EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCc
Q 015650 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (403)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 187 (403)
|.++|.+.... +.+. .+...+....|++++..++...... ....|++||+.+++......+...+..++|+||+
T Consensus 172 l~~~d~~g~~~---~~l~-~~~~~~~~p~~Spdg~~la~~~~~~--~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 172 LQVADYDGANP---QTIT-RSREPILSPAWSPDGQKLAYVSFES--GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDG 245 (417)
T ss_pred EEEEcCCCCCC---EEee-cCCCceecccCCCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence 66777654332 2232 3455678888999988776544320 0157999999988765544466667789999999
Q ss_pred eEEE-e-----cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCce
Q 015650 188 IIVV-L-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI 261 (403)
Q Consensus 188 ~~~~-~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i 261 (403)
..++ . +..|++||+.+++.. .+..+........|+++++.+++...-.....|+++|+.++....+..+...+
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~ 324 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYN 324 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence 7665 2 236999999876543 33333334456788999887766542112346888888887777776666777
Q ss_pred EEEEEcCCCCEEEEEeCCC---cEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 015650 262 ACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG 325 (403)
Q Consensus 262 ~~~~~sp~g~~l~s~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg 325 (403)
..+.|+|+|++|+.++.++ . |.+||+.++... .+... .......|+|||++|+..+.++
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~-i~~~d~~~~~~~-~l~~~---~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFN-IAVMDLDGGGER-VLTDT---GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceE-EEEEeCCCCCeE-EccCC---CCCCCceECCCCCEEEEEEeCC
Confidence 8899999999999888765 6 899998876543 33321 2345678999999988877554
No 228
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=4.4e-12 Score=117.53 Aligned_cols=214 Identities=12% Similarity=0.077 Sum_probs=138.2
Q ss_pred EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCc
Q 015650 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (403)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 187 (403)
|.++|.+..... .+. .+...+....|+|++..++..+.+. ....|++|++.+++........+.+....|+|||
T Consensus 181 l~~~d~~g~~~~---~l~-~~~~~~~~p~wSpDG~~la~~s~~~--~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 181 LQRSDYDGARAV---TLL-QSREPILSPRWSPDGKRIAYVSFEQ--KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDG 254 (430)
T ss_pred EEEECCCCCCce---EEe-cCCCceeeeeECCCCCEEEEEEcCC--CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCC
Confidence 666666544322 222 3556788899999987765433220 0147999999888765433345556679999999
Q ss_pred eEEE--e--cC--eEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCce
Q 015650 188 IIVV--L--EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI 261 (403)
Q Consensus 188 ~~~~--~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i 261 (403)
..++ . ++ .|++||+.+++.. .+..+........|+|+++.+++.+.......|+++++.++....+.......
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~ 333 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYN 333 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence 8776 2 33 6999999887643 34334444556789999988776642222346777888777665554333344
Q ss_pred EEEEEcCCCCEEEEEeCC-C--cEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC-C--cEEEEEee
Q 015650 262 ACFALTQDGQLLATSSTK-G--TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-G--TVHVFNLK 333 (403)
Q Consensus 262 ~~~~~sp~g~~l~s~~~d-g--~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d-g--~v~iwd~~ 333 (403)
....|+|||++|+..+.+ + . |.+||+.+++.. .+... .......|+|||++|+..+.+ | .|++++++
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~-l~~~dl~tg~~~-~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFH-VAAQDLQRGSVR-ILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred cceEECCCCCEEEEEEccCCceE-EEEEECCCCCEE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 567899999999877653 2 4 888999887653 33321 122356899999998876643 3 35555654
No 229
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=3.8e-12 Score=117.58 Aligned_cols=177 Identities=16% Similarity=0.112 Sum_probs=118.2
Q ss_pred ceEEEEECCCCceeEEEecCCceeEEEEecCceEEEe----c--CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL----E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (403)
..|.++|...............+....|+|||..++. + ..|++||+.+++... +...........|+|+++.+
T Consensus 198 ~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 198 YQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred eEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 3677788655544333347778899999999988772 2 269999998876432 22223334568999999987
Q ss_pred EEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCC-Cc-EEEEEEcCCCcEEEEEecCCCcccEE
Q 015650 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-GT-LVRIFNTLDGTLLQEVRRGADRAEIY 307 (403)
Q Consensus 230 ~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d-g~-~i~iwd~~~~~~~~~~~~~~~~~~v~ 307 (403)
+++........|+++|+.++....+..+.......+|+|||+.|+..+.. +. .|+++|+.+++...... ......
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~---~g~~~~ 353 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF---EGEQNL 353 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec---CCCCCc
Confidence 66542222235888898888877777666667889999999988776542 32 27777887776543322 112334
Q ss_pred EEEeCCCCCEEEEEeC-CCc--EEEEEeecCC
Q 015650 308 SLAFSSNAQWLAVSSD-KGT--VHVFNLKVNS 336 (403)
Q Consensus 308 ~l~~s~d~~~l~s~~~-dg~--v~iwd~~~~~ 336 (403)
...|+|||++|+..+. ++. |.++|+.+++
T Consensus 354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred CeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence 5789999999877654 444 4555666554
No 230
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.4e-13 Score=117.06 Aligned_cols=188 Identities=16% Similarity=0.159 Sum_probs=139.9
Q ss_pred EEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650 89 LHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (403)
Q Consensus 89 ~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~ 167 (403)
.+++|+.+|..|++|. |+.+|||++....... ... .|...|-++.|++|+..+++-+.+ ..+||++.++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--~e~-~~~~eV~DL~FS~dgk~lasig~d------~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--EEI-AHHAEVKDLDFSPDGKFLASIGAD------SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh--hhH-hhcCccccceeCCCCcEEEEecCC------ceEEEEeccCc
Confidence 7899999999999998 5559999987665442 232 588899999999999999999886 78999999997
Q ss_pred eeEEEe---cCCceeEEEEecCc-----eEEEe---cCeEEEEEcCCcee-----eeEeeccCCCceeEEEeeCCCeEEE
Q 015650 168 CIGELS---FRSEVRSVKLRRDR-----IIVVL---EQKIFVYNFADLKL-----LHQIETIANPKGLCAVSQGVGSLVL 231 (403)
Q Consensus 168 ~~~~~~---~~~~i~~~~~~~~~-----~~~~~---d~~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (403)
.+.... .......+.|..|+ ++++. .+.|+.||+..... .++.......+.+++++.+++. +
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf--~ 296 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF--L 296 (398)
T ss_pred hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE--E
Confidence 777665 34556778888876 22221 34566666543221 1111122346789999999884 4
Q ss_pred EeeCCccCeEEEEEccCCceeE--EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 015650 232 VCPGLQKGQVRVEHYASKRTKF--IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (403)
Q Consensus 232 ~~~g~~d~~i~v~d~~~~~~~~--~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~ 289 (403)
+. |+.+|.|.|++...-+... -+.|...|+.+.|+||.+++++.+.+.. ..|..+.
T Consensus 297 Al-GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~-~~v~~l~ 354 (398)
T KOG0771|consen 297 AL-GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE-AAVTKLA 354 (398)
T ss_pred EE-eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc-eeEEEEe
Confidence 43 4589999999988754433 3579999999999999999999888888 8887664
No 231
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=8.4e-14 Score=120.38 Aligned_cols=250 Identities=14% Similarity=0.142 Sum_probs=179.0
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeC--CeEEEeeCCCCCCCCC
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPL 155 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~~ 155 (403)
..+..|.+.|+.+.|+..|..|++|+|+. |.+||+...... ..+..+|...+....|-| +..-+++.+.|
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~d----- 208 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--LSFESGHCNNVFQAKFIPFSGDRTIVTSSRD----- 208 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcc--cccccccccchhhhhccCCCCCcCceecccc-----
Confidence 66889999999999999999999999665 999999887766 456567888888777765 45668888888
Q ss_pred ceEEEEECCCC-cee---EEEecCCceeEEEEecCceEEE----ecCeEEEEEcCCceeeeEe---eccCC---CceeEE
Q 015650 156 NKVMIWDDHQS-RCI---GELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQI---ETIAN---PKGLCA 221 (403)
Q Consensus 156 ~~i~iwd~~~~-~~~---~~~~~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~---~~~~~---~~~~~~ 221 (403)
|.+++=.+... ... +..+|.++|.-++.-|+..+-+ .|+.+.-+|++.+.....+ +.+.. ....++
T Consensus 209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 99998876443 322 2223999999999998765544 4889999999886443332 22222 334566
Q ss_pred EeeCCCeEEEEeeCCccCeEEEEEccCCc-------eeEEe------ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEc
Q 015650 222 VSQGVGSLVLVCPGLQKGQVRVEHYASKR-------TKFIM------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (403)
Q Consensus 222 ~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-------~~~~~------~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~ 288 (403)
+.|...+. +++ |..|..+++||.+.-. +..+. ...-.|++++|+.++.-|.++..|-. |++|.-
T Consensus 289 ~~P~nt~~-faV-gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~-IYLF~~ 365 (559)
T KOG1334|consen 289 VDPRNTNE-FAV-GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED-IYLFNK 365 (559)
T ss_pred cCCCCccc-ccc-CChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc-eEEecc
Confidence 66655443 444 4589999999987621 12222 22346999999987777777777877 999953
Q ss_pred CC--C----------cEEEE-EecCCCcccEEEEE-eCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650 289 LD--G----------TLLQE-VRRGADRAEIYSLA-FSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (403)
Q Consensus 289 ~~--~----------~~~~~-~~~~~~~~~v~~l~-~s~d~~~l~s~~~dg~v~iwd~~~~~~~ 338 (403)
.. | ..+.. +++|.....|..+- |-|...++++|++=|.|.||+-.+++.+
T Consensus 366 ~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 366 SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred ccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 32 2 22222 56654445677775 4688899999999999999999988853
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.54 E-value=7.7e-13 Score=107.41 Aligned_cols=137 Identities=17% Similarity=0.216 Sum_probs=99.3
Q ss_pred ceEEEEECC-CCceeEEEe--cCCceeEEEEecCceEEE-----ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650 156 NKVMIWDDH-QSRCIGELS--FRSEVRSVKLRRDRIIVV-----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (403)
Q Consensus 156 ~~i~iwd~~-~~~~~~~~~--~~~~i~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (403)
+...+|.++ .+..+..+. ..++|.+++|+|++..++ .++.|.+||++ ++.+..+. ......+.|+|+|+
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGR 113 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCC
Confidence 345555542 234455554 456799999999988765 25689999996 66666664 45667899999999
Q ss_pred eEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeC------CCcEEEEEEcCCCcEEEEEe
Q 015650 228 SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST------KGTLVRIFNTLDGTLLQEVR 298 (403)
Q Consensus 228 ~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~------dg~~i~iwd~~~~~~~~~~~ 298 (403)
.++++..|...|.|.+||.+..+......|. .++.++|+|||++|+++.. |.. ++||+. .|+.+....
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng-~~Iw~~-~G~~l~~~~ 187 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNG-FKIWSF-QGRLLYKKP 187 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEeccceecccc-EEEEEe-cCeEeEecc
Confidence 7666654555689999999975554444444 4789999999999998864 667 999997 577665544
No 233
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.54 E-value=3.3e-10 Score=101.41 Aligned_cols=261 Identities=14% Similarity=0.094 Sum_probs=159.9
Q ss_pred CcEEEEEc--CCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC--c--eeEEEe-cCCce
Q 015650 106 HGFRIYNC--DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS--R--CIGELS-FRSEV 178 (403)
Q Consensus 106 ~~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~--~--~~~~~~-~~~~i 178 (403)
++|.+|++ ++++......+. .......+.+++++..|++..... ...+.|..|++... + .+.... .....
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~--~~~~Ps~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p 89 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVA--EGENPSWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSP 89 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE--ESSSECCEEE-TTSSEEEEEETTS-STTTEEEEEEEETTTTEEEEEEEEEESSSCE
T ss_pred CcEEEEEEcCCCCCceEeeeec--CCCCCceEEEEeCCCEEEEEEccc-cCCCCEEEEEECCCcceeEEeeeeccCCCCc
Confidence 46999988 344433333332 333444556666555444443310 01289999988764 2 233333 45566
Q ss_pred eEEEEecCceEEE----ecCeEEEEEcCC-ceeeeE---ee----------ccCCCceeEEEeeCCCeEEEEeeCCccCe
Q 015650 179 RSVKLRRDRIIVV----LEQKIFVYNFAD-LKLLHQ---IE----------TIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240 (403)
Q Consensus 179 ~~~~~~~~~~~~~----~d~~i~i~d~~~-~~~~~~---~~----------~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 240 (403)
..++++|++.+++ .+|.|.++++.. +..... +. ........+.++|+++.+++.--| ...
T Consensus 90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG--~D~ 167 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG--ADR 167 (345)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT--TTE
T ss_pred EEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC--CCE
Confidence 7899999998877 388999999986 433222 21 012234578899999887766544 458
Q ss_pred EEEEEccCCc--eeE---Ee-ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC--CCc--EEEEEecC---C-CcccE
Q 015650 241 VRVEHYASKR--TKF---IM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL--DGT--LLQEVRRG---A-DRAEI 306 (403)
Q Consensus 241 i~v~d~~~~~--~~~---~~-~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~--~~~--~~~~~~~~---~-~~~~v 306 (403)
|.+|++.... +.. +. ........+.|+|++++++..++....|.++++. +++ .+..+... . .....
T Consensus 168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 9999987744 322 22 3455678999999999997776644339999987 443 22333211 1 11257
Q ss_pred EEEEeCCCCCEEEEEe-CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceE
Q 015650 307 YSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI 385 (403)
Q Consensus 307 ~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (403)
..|+++|||++|+++. ..+.|.+|+++...... ..+..+.........
T Consensus 248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l-------------------------------~~~~~~~~~G~~Pr~ 296 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL-------------------------------TLVQTVPTGGKFPRH 296 (345)
T ss_dssp EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE-------------------------------EEEEEEEESSSSEEE
T ss_pred eeEEEecCCCEEEEEeccCCEEEEEEEecCCCce-------------------------------EEEEEEeCCCCCccE
Confidence 8999999999987765 67789999996443100 012223333445888
Q ss_pred EEeccCCCEEEEEccCC
Q 015650 386 VAFGHQKNTVVILGMDG 402 (403)
Q Consensus 386 ~~fs~d~~~l~~~~~dG 402 (403)
++|+|+|++|++++.++
T Consensus 297 ~~~s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 297 FAFSPDGRYLYVANQDS 313 (345)
T ss_dssp EEE-TTSSEEEEEETTT
T ss_pred EEEeCCCCEEEEEecCC
Confidence 99999999999998664
No 234
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=1.6e-10 Score=97.22 Aligned_cols=249 Identities=15% Similarity=0.151 Sum_probs=171.0
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEc----CCcEEEEEcCCC--eeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650 81 SSSPPPTLLHISFNQDHGCFAAGT----DHGFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (403)
Q Consensus 81 ~~~~~~~i~~i~~s~d~~~l~~~~----~~~i~iw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~ 154 (403)
...+.+.++-|+|+|++++|.++. +++|..|.++.. ...+..... .....-..++.++++.+++++...
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~---- 109 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYH---- 109 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEcc----
Confidence 344667789999999999887775 234989988763 333322222 122233677888888777776532
Q ss_pred CceEEEEECCC-Cc---eeEEEecCCc----------eeEEEEecCceEEE-e---cCeEEEEEcCCceeeeE----eec
Q 015650 155 LNKVMIWDDHQ-SR---CIGELSFRSE----------VRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQ----IET 212 (403)
Q Consensus 155 ~~~i~iwd~~~-~~---~~~~~~~~~~----------i~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~----~~~ 212 (403)
.|.|.++-+.. |. .+..+.|.+. +....+.|++++++ . -..|.+|++..|++... ++
T Consensus 110 ~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~- 188 (346)
T COG2706 110 SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK- 188 (346)
T ss_pred CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC-
Confidence 48999999865 43 3344456655 88899999998888 2 46899999998764322 22
Q ss_pred cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeEEeec---------CCceEEEEEcCCCCEEEEEeCCCc
Q 015650 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAH---------DSRIACFALTQDGQLLATSSTKGT 281 (403)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~~~~---------~~~i~~~~~sp~g~~l~s~~~dg~ 281 (403)
....-+.+.|+|+++-.|+++ .-+++|.+|.... ++...++.+ ..+...|.+++||++|+++..--.
T Consensus 189 ~G~GPRHi~FHpn~k~aY~v~--EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d 266 (346)
T COG2706 189 PGAGPRHIVFHPNGKYAYLVN--ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD 266 (346)
T ss_pred CCCCcceEEEcCCCcEEEEEe--ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC
Confidence 233347899999999888876 6789999999887 455444322 346778999999999988765332
Q ss_pred EEEEEEcCCC-cEEEEEe-cCCCcccEEEEEeCCCCCEEEEEe-CCCcEEEEEeecCCC
Q 015650 282 LVRIFNTLDG-TLLQEVR-RGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSG 337 (403)
Q Consensus 282 ~i~iwd~~~~-~~~~~~~-~~~~~~~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~~~ 337 (403)
.|.+|.+... ..+..+. ...+...-+...|+++|++|+++. ++..|.+|.++....
T Consensus 267 sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 267 SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence 2888877532 2232222 122334478999999999998887 445699999887663
No 235
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.54 E-value=8.1e-13 Score=109.62 Aligned_cols=245 Identities=12% Similarity=0.217 Sum_probs=159.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCee---EEEEeccc-----------CcceeEEEEeeeCC--eEEEee
Q 015650 84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE---IFRRDFER-----------GGGIGVVEMLFRCN--ILALVG 146 (403)
Q Consensus 84 ~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~---~~~~~~~~-----------~~~~~v~~~~~~~~--~~~~~s 146 (403)
..+-|.++.|..+|.+||+|+.+| |.+|.-+.... .+...++. .-...|..+.|..+ ...+..
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 456789999999999999999777 88886542221 11122210 02235556666543 223333
Q ss_pred CCCCCCCCCceEEEEECCCCc-----------------------------------eeEEEe--cCCceeEEEEecCceE
Q 015650 147 GGPDPQYPLNKVMIWDDHQSR-----------------------------------CIGELS--FRSEVRSVKLRRDRII 189 (403)
Q Consensus 147 ~~~d~~~~~~~i~iwd~~~~~-----------------------------------~~~~~~--~~~~i~~~~~~~~~~~ 189 (403)
...| .+|++|.+.... +.+.+. |...|.++.++.|+..
T Consensus 104 stNd-----ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 104 STND-----KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred ecCC-----cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 3444 899999864321 122333 6677899999999887
Q ss_pred EE-e-cCeEEEEEcCCc-eeeeEeec-------cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-----eEE
Q 015650 190 VV-L-EQKIFVYNFADL-KLLHQIET-------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----KFI 254 (403)
Q Consensus 190 ~~-~-d~~i~i~d~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-----~~~ 254 (403)
+. . |=.|.+|+++-- +....+.. ...-|+...|+|....+++.+ +..|.|++-|++...+ +.+
T Consensus 179 ~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YS--SSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 179 FLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYS--SSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred EeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEe--cCCCcEEEeechhhhhhcchhhhh
Confidence 77 3 558999998742 22222211 123456778888877765554 4689999999995221 111
Q ss_pred ------------eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC-CCcEEEEEecCCC----------ccc---EEE
Q 015650 255 ------------MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGAD----------RAE---IYS 308 (403)
Q Consensus 255 ------------~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~-~~~~~~~~~~~~~----------~~~---v~~ 308 (403)
..--..|..+.|+.+|+|+++-..- + |++||+. ..+++.++..+.+ ... -..
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-t-vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe 334 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-T-VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE 334 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-e-eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence 1122468899999999999876554 4 9999994 5566666654211 012 235
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650 309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 309 l~~s~d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
++|+-++.++++|+....+++|++..+..
T Consensus 335 c~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 335 CSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred EEEcCCcceEecccccceEEEecCCCCcc
Confidence 78999999999999999999999777664
No 236
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=4.7e-12 Score=117.00 Aligned_cols=214 Identities=13% Similarity=0.063 Sum_probs=134.3
Q ss_pred EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCc
Q 015650 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (403)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 187 (403)
|.++|.+..... .+. .....+....|+||+..++....+. ....|++||+.+++...............|+|||
T Consensus 200 l~i~d~dG~~~~---~l~-~~~~~~~~p~wSPDG~~La~~s~~~--g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG 273 (448)
T PRK04792 200 LMIADYDGYNEQ---MLL-RSPEPLMSPAWSPDGRKLAYVSFEN--RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDG 273 (448)
T ss_pred EEEEeCCCCCce---Eee-cCCCcccCceECCCCCEEEEEEecC--CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCC
Confidence 556666544332 222 2456778889999987666543210 0146999999888754333334445678999999
Q ss_pred eEEE-e---cC--eEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCce
Q 015650 188 IIVV-L---EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI 261 (403)
Q Consensus 188 ~~~~-~---d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i 261 (403)
..++ . ++ .|+++|+.+++.. .+..+........|+|+++.+++.+.......|+++|+.+++...+.......
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~ 352 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN 352 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC
Confidence 8776 2 44 4888898877543 34334444567889999988766642222345777788777766554333334
Q ss_pred EEEEEcCCCCEEEEEeCC-Cc-EEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC-CCc--EEEEEe
Q 015650 262 ACFALTQDGQLLATSSTK-GT-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD-KGT--VHVFNL 332 (403)
Q Consensus 262 ~~~~~sp~g~~l~s~~~d-g~-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~-dg~--v~iwd~ 332 (403)
...+|+|||++|+..+.+ +. .|.++|+.+++.. .+... .......|+|||++|+..+. +|. ++++++
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~---~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST---RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 567899999999876653 32 1666788877653 33321 12234589999998876653 443 566665
No 237
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.53 E-value=2.2e-12 Score=106.09 Aligned_cols=235 Identities=14% Similarity=0.093 Sum_probs=164.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCe-eEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650 83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR-EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (403)
Q Consensus 83 ~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i 160 (403)
.-..+|+|.+|++|+..+|++..+. |.||.....+ -....++. .|...++.+.|.+....+++++.| ..-++
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~snrIvtcs~d-----rnayV 81 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHD-----RNAYV 81 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEeecCCCCceeEccCC-----CCccc
Confidence 3457899999999999999998664 9999987666 44446776 799999999999999999999999 89999
Q ss_pred EEC-CCCc--eeE-EEecCCceeEEEEecCceEEEe---cCeEEEEEcCCcee----eeEeeccCCCceeEEEeeCCCeE
Q 015650 161 WDD-HQSR--CIG-ELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKL----LHQIETIANPKGLCAVSQGVGSL 229 (403)
Q Consensus 161 wd~-~~~~--~~~-~~~~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 229 (403)
|.. ..++ +.. .+++....+++.|+|....++. ...|.+|-++.... .+.-+.+...|.++.|+|++ .
T Consensus 82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn--V 159 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN--V 159 (361)
T ss_pred cccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc--c
Confidence 998 4443 222 3348999999999998877772 44677776654221 11112334555666666654 3
Q ss_pred EEEeeCCccCeEEEEEc-----cCCc--------------eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC
Q 015650 230 VLVCPGLQKGQVRVEHY-----ASKR--------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (403)
Q Consensus 230 ~~~~~g~~d~~i~v~d~-----~~~~--------------~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~ 290 (403)
+++ +|+.|+..+||.. +.+. +.......+.+..+.|+|+|..|+-.+.|+. +.+-|...
T Consensus 160 Lla-aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~-v~~~da~~ 237 (361)
T KOG1523|consen 160 LLA-AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST-VSFVDAAG 237 (361)
T ss_pred eec-ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc-eEEeecCC
Confidence 444 5779999999863 2211 1122345678999999999999999999999 99998765
Q ss_pred Cc-EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEE
Q 015650 291 GT-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330 (403)
Q Consensus 291 ~~-~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iw 330 (403)
.. .+..+.. ..-+..++.|-.+... +.++.|..=.++
T Consensus 238 p~~~v~~~~~--~~lP~ls~~~ise~~v-v~ag~~c~P~lf 275 (361)
T KOG1523|consen 238 PSERVQSVAT--AQLPLLSVSWISENSV-VAAGYDCGPVLF 275 (361)
T ss_pred Cchhccchhh--ccCCceeeEeecCCce-eecCCCCCceEE
Confidence 54 3333332 2257778888665443 334444333333
No 238
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.2e-11 Score=113.47 Aligned_cols=216 Identities=11% Similarity=0.078 Sum_probs=134.9
Q ss_pred EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEE--E-eeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEe
Q 015650 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILA--L-VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLR 184 (403)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~-~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~ 184 (403)
|.+.|.+..... .+. ........-.|+||+.. + +....+. ...|++.++..++..+............|+
T Consensus 167 l~~~d~dG~~~~---~lt-~~~~~~~sP~wSPDG~~~~~~y~S~~~g---~~~I~~~~l~~g~~~~lt~~~g~~~~p~wS 239 (428)
T PRK01029 167 LWSVDYDGQNLR---PLT-QEHSLSITPTWMHIGSGFPYLYVSYKLG---VPKIFLGSLENPAGKKILALQGNQLMPTFS 239 (428)
T ss_pred EEEEcCCCCCce---Ecc-cCCCCcccceEccCCCceEEEEEEccCC---CceEEEEECCCCCceEeecCCCCccceEEC
Confidence 555555544332 233 23445677889999642 3 2222220 157888899888755544456666778999
Q ss_pred cCceEEE--ec--C--e--EEEEEcCCc---eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCe--EEEEEccC--C
Q 015650 185 RDRIIVV--LE--Q--K--IFVYNFADL---KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ--VRVEHYAS--K 249 (403)
Q Consensus 185 ~~~~~~~--~d--~--~--i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~--i~v~d~~~--~ 249 (403)
|||+.++ .+ | . +.+|++..+ +..+............+|+|+++.+++++ ..+|. |.++++.. +
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s--~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVS--NKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEE--CCCCCceEEEEECccccc
Confidence 9998777 22 2 3 444676653 32333322223345679999999877664 23454 44445432 3
Q ss_pred ceeEEeecCCceEEEEEcCCCCEEEEEeCC---CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC---
Q 015650 250 RTKFIMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD--- 323 (403)
Q Consensus 250 ~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d---g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~--- 323 (403)
....+..+...+....|+|||++|+..+.+ .. |++||+.+++...... ....+....|+|||++|+....
T Consensus 318 ~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~-I~v~dl~~g~~~~Lt~---~~~~~~~p~wSpDG~~L~f~~~~~g 393 (428)
T PRK01029 318 SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQ-ICVYDLATGRDYQLTT---SPENKESPSWAIDSLHLVYSAGNSN 393 (428)
T ss_pred ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcE-EEEEECCCCCeEEccC---CCCCccceEECCCCCEEEEEECCCC
Confidence 345555555677889999999999876543 35 9999998887654332 2245678999999998875442
Q ss_pred CCcEEEEEeecCC
Q 015650 324 KGTVHVFNLKVNS 336 (403)
Q Consensus 324 dg~v~iwd~~~~~ 336 (403)
...|++||++.++
T Consensus 394 ~~~L~~vdl~~g~ 406 (428)
T PRK01029 394 ESELYLISLITKK 406 (428)
T ss_pred CceEEEEECCCCC
Confidence 3468888887765
No 239
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=6.5e-13 Score=116.32 Aligned_cols=189 Identities=12% Similarity=0.133 Sum_probs=124.9
Q ss_pred ceeEEEEeeeC--CeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEEecCeEEEEEcCCcee
Q 015650 129 GIGVVEMLFRC--NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKL 206 (403)
Q Consensus 129 ~~~v~~~~~~~--~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 206 (403)
...++++.|-+ +..++++-.. |.++++|..- .....-.+-...+++..+...-..... +..+
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~s------Gnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~ksk~---~rNP 282 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHAS------GNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSKSKK---TRNP 282 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEec------CceEEeeccc-------cccCCCCcccccCCCCeeEEeeeeccc---cCCc
Confidence 36778888765 4555555443 8899998511 100001111122333332211111111 1133
Q ss_pred eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCcee-EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 015650 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRI 285 (403)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~-~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~i 285 (403)
+..+......+...+|++|+..+..+ + .||.++|||+.+.++. .++.--+...|++|||||+||++|++|.- |.|
T Consensus 283 v~~w~~~~g~in~f~FS~DG~~LA~V--S-qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL-VtV 358 (636)
T KOG2394|consen 283 VARWHIGEGSINEFAFSPDGKYLATV--S-QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL-VTV 358 (636)
T ss_pred cceeEeccccccceeEcCCCceEEEE--e-cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcce-EEE
Confidence 33344445578889999988865444 3 9999999999986653 33445677999999999999999999999 999
Q ss_pred EEcCCCcEEEEEecCCCcccEEEEEeCC-------------------------------C----C-------------CE
Q 015650 286 FNTLDGTLLQEVRRGADRAEIYSLAFSS-------------------------------N----A-------------QW 317 (403)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~v~~l~~s~-------------------------------d----~-------------~~ 317 (403)
|.+..++.+..-. .|.+.|..++|.| + + -.
T Consensus 359 wSf~erRVVARGq--GHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YR 436 (636)
T KOG2394|consen 359 WSFEERRVVARGQ--GHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYR 436 (636)
T ss_pred EEeccceEEEecc--ccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEE
Confidence 9999888876555 4889999999982 0 1 14
Q ss_pred EEEEeCCCcEEEEEeecCCCCC
Q 015650 318 LAVSSDKGTVHVFNLKVNSGSA 339 (403)
Q Consensus 318 l~s~~~dg~v~iwd~~~~~~~~ 339 (403)
|.+.+.|-.+.+||+......+
T Consensus 437 fGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 437 FGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred eecccccceEEEEecchhhccc
Confidence 6778899999999998766544
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.50 E-value=2.3e-11 Score=108.78 Aligned_cols=235 Identities=13% Similarity=0.145 Sum_probs=146.5
Q ss_pred EEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650 89 LHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (403)
Q Consensus 89 ~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~ 167 (403)
..+.|+|||+++.+.+ |+.|.++|+.+.+.. .++. -......+++++++.+++.+... ++.+.++|.++.+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v--~~i~--~G~~~~~i~~s~DG~~~~v~n~~----~~~v~v~D~~tle 111 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVV--ATIK--VGGNPRGIAVSPDGKYVYVANYE----PGTVSVIDAETLE 111 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEE--EEEE---SSEEEEEEE--TTTEEEEEEEE----TTEEEEEETTT--
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEE--EEEe--cCCCcceEEEcCCCCEEEEEecC----CCceeEecccccc
Confidence 4477999999988777 555999999988855 5555 34456788899998777765432 2899999999999
Q ss_pred eeEEEe-c-------CCceeEEEEecCce-EEE-e--cCeEEEEEcCCceee--eEeeccCCCceeEEEeeCCCeEEEEe
Q 015650 168 CIGELS-F-------RSEVRSVKLRRDRI-IVV-L--EQKIFVYNFADLKLL--HQIETIANPKGLCAVSQGVGSLVLVC 233 (403)
Q Consensus 168 ~~~~~~-~-------~~~i~~~~~~~~~~-~~~-~--d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (403)
.++.+. . ...+..+..++.+. +++ . .+.|.+.|..+.+.+ ..+. .........++++++.++++.
T Consensus 112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~~va~ 190 (369)
T PF02239_consen 112 PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYFLVAA 190 (369)
T ss_dssp EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEE
T ss_pred ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-ccccccccccCcccceeeecc
Confidence 999886 1 23567788788766 444 2 478888887765433 2332 233445678888887766554
Q ss_pred eCCccCeEEEEEccCCcee--------------------------------------------------------EEeec
Q 015650 234 PGLQKGQVRVEHYASKRTK--------------------------------------------------------FIMAH 257 (403)
Q Consensus 234 ~g~~d~~i~v~d~~~~~~~--------------------------------------------------------~~~~~ 257 (403)
.....|-++|..++... .+...
T Consensus 191 --~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~ 268 (369)
T PF02239_consen 191 --NGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ 268 (369)
T ss_dssp --GGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S
T ss_pred --cccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC
Confidence 24457777776653221 11111
Q ss_pred CCceEEEEEcCCCCEEEEE----eCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe--CCCcEEEEE
Q 015650 258 DSRIACFALTQDGQLLATS----STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS--DKGTVHVFN 331 (403)
Q Consensus 258 ~~~i~~~~~sp~g~~l~s~----~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~--~dg~v~iwd 331 (403)
... .-+..+|++++++.. ...+. |.|+|.++.+.+..+.... ...+..+.|++||+++..+. .++.|.+||
T Consensus 269 G~g-lFi~thP~s~~vwvd~~~~~~~~~-v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 269 GGG-LFIKTHPDSRYVWVDTFLNPDADT-VQVIDKKTLKVVKTITPGP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp SSS---EE--TT-SEEEEE-TT-SSHT--EEEEECCGTEEEE-HHHHH-T--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred CCc-ceeecCCCCccEEeeccCCCCCce-EEEEECcCcceeEEEeccC-CCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence 112 345668999999987 33466 9999999998888876421 13499999999999765554 344799999
Q ss_pred eecCCC
Q 015650 332 LKVNSG 337 (403)
Q Consensus 332 ~~~~~~ 337 (403)
..+.+.
T Consensus 346 ~~Tl~~ 351 (369)
T PF02239_consen 346 AKTLKE 351 (369)
T ss_dssp TTTTEE
T ss_pred CCCcEE
Confidence 999885
No 241
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=7.6e-11 Score=97.11 Aligned_cols=212 Identities=15% Similarity=0.174 Sum_probs=148.5
Q ss_pred cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC-CCceeEEEe---cCCceeEEE
Q 015650 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH-QSRCIGELS---FRSEVRSVK 182 (403)
Q Consensus 107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~-~~~~~~~~~---~~~~i~~~~ 182 (403)
.|.|||=....++ .++. -...|.++.+..+.+.++.. +.|+||... +-+.++.+. .+..+.+++
T Consensus 76 kviIWDD~k~~~i--~el~--f~~~I~~V~l~r~riVvvl~--------~~I~VytF~~n~k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 76 KVIIWDDLKERCI--IELS--FNSEIKAVKLRRDRIVVVLE--------NKIYVYTFPDNPKLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred eEEEEecccCcEE--EEEE--eccceeeEEEcCCeEEEEec--------CeEEEEEcCCChhheeeeecccCCCceEeec
Confidence 4999994333333 4453 56889999999998888776 689999987 446677666 244444444
Q ss_pred EecCceEEEe----cCeEEEEEcCCcee--eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEe
Q 015650 183 LRRDRIIVVL----EQKIFVYNFADLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIM 255 (403)
Q Consensus 183 ~~~~~~~~~~----d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~ 255 (403)
-..+..+++. -|.|.|-|+...+. ...+..|...|.+++++.+|. .+|+++...-.|+|||..++.. ..+.
T Consensus 144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt--~vATaStkGTLIRIFdt~~g~~l~E~R 221 (346)
T KOG2111|consen 144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT--LVATASTKGTLIRIFDTEDGTLLQELR 221 (346)
T ss_pred CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc--EEEEeccCcEEEEEEEcCCCcEeeeee
Confidence 4445666662 58999999987554 467889999999999999887 5666554555699999988554 4443
Q ss_pred e--cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEE------------------------EEecCCCcccEEEE
Q 015650 256 A--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ------------------------EVRRGADRAEIYSL 309 (403)
Q Consensus 256 ~--~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~------------------------~~~~~~~~~~v~~l 309 (403)
. ....|.+|+|||++.+||++|..|+ |.||.++....-. .+.. ..+...-+
T Consensus 222 RG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l--~~~~~~~~ 298 (346)
T KOG2111|consen 222 RGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQL--PQGTQCII 298 (346)
T ss_pred cCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCccccccccccccccchhcccceeEEEEEc--cCCCcEEE
Confidence 2 3457999999999999999999999 9999886532111 1111 12345556
Q ss_pred EeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650 310 AFSSNAQWLAVSSDKGTVHVFNLKVN 335 (403)
Q Consensus 310 ~~s~d~~~l~s~~~dg~v~iwd~~~~ 335 (403)
+|-.+.+.++..+.||.-+-+.+...
T Consensus 299 ~fg~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 299 AFGSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred EecCCCCeEEEEEeCCcEEEEEeccc
Confidence 77777556666667887766655443
No 242
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.48 E-value=2.8e-11 Score=105.71 Aligned_cols=242 Identities=13% Similarity=0.095 Sum_probs=166.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCC----------
Q 015650 84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY---------- 153 (403)
Q Consensus 84 ~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~---------- 153 (403)
..-++..+.|||.|.+|++....+|.+|.-.....+ ..+ ....+..+.|+|++.+|++-.+.+.-
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l--~~~---~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKL--VRF---RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhhe--eee---ecCCceecccCcccceeeeeccCCccChhhccCCcc
Confidence 455788899999999999999999999997766633 334 23468889999999999998877551
Q ss_pred CCceEEEEECCCCceeEEEe-cCCc--ee-EEEEecCceEEE--ecCeEEEEEcCCceee-eEeecc-CCCceeEEEeeC
Q 015650 154 PLNKVMIWDDHQSRCIGELS-FRSE--VR-SVKLRRDRIIVV--LEQKIFVYNFADLKLL-HQIETI-ANPKGLCAVSQG 225 (403)
Q Consensus 154 ~~~~i~iwd~~~~~~~~~~~-~~~~--i~-~~~~~~~~~~~~--~d~~i~i~d~~~~~~~-~~~~~~-~~~~~~~~~~~~ 225 (403)
..+.+.+||+.+|..+..+. ...+ .. -+.|+-+..+++ ....++|+++ ++... ..+... ...+....++|.
T Consensus 106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred ccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence 12469999999999999987 2222 34 688999998888 6889999997 43221 111111 245566777877
Q ss_pred CCeEEEEe----eCCccCeEEEEEccCCceeEEe-ecCCceEEEEEcCCCCEEEEEeC-----------CCcEEEEEEcC
Q 015650 226 VGSLVLVC----PGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSST-----------KGTLVRIFNTL 289 (403)
Q Consensus 226 ~~~~~~~~----~g~~d~~i~v~d~~~~~~~~~~-~~~~~i~~~~~sp~g~~l~s~~~-----------dg~~i~iwd~~ 289 (403)
+++--+++ .+...+.+++|.+..+...... -....-..+.|.+.|++|+.--. ... ++|+++.
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn-Lyl~~~~ 263 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN-LYLLRIT 263 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccce-EEEEeec
Confidence 55443333 2346788999998764432221 11222346788888888764211 234 8889887
Q ss_pred CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe--CCCcEEEEEeecC
Q 015650 290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS--DKGTVHVFNLKVN 335 (403)
Q Consensus 290 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~--~dg~v~iwd~~~~ 335 (403)
...+..... ..++|...+|.|+++.+++.+ .+-.+.++|++..
T Consensus 264 e~~i~V~~~---~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 264 ERSIPVEKD---LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred ccccceecc---ccccceeeeecccCCceeEEecccccceeecccccc
Confidence 443332322 357999999999999876654 7778888888765
No 243
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.47 E-value=2.8e-11 Score=115.99 Aligned_cols=253 Identities=11% Similarity=0.097 Sum_probs=163.7
Q ss_pred CCccccCCCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEEcCCCee---E--EEEecccCcceeEEEEeeeCCeEEEeeCC
Q 015650 76 PAESTSSSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFRE---I--FRRDFERGGGIGVVEMLFRCNILALVGGG 148 (403)
Q Consensus 76 ~~~~~~~~~~~~i~~i~~s~d~-~~l~~~~~~~-i~iw~~~~~~~---~--~~~~~~~~~~~~v~~~~~~~~~~~~~s~~ 148 (403)
.....+..|...|..++.+++. .++++|+++| |++|+...... . ...++. -....+..+...+++..++.++
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys-~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS-PEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe-ccCCceEEEEeccCCCeEEEEc
Confidence 3446678899999999987655 9999999666 99999853211 1 112221 1345566666666677777778
Q ss_pred CCCCCCCceEEEEECCCCc-------eeEEEe--cCCceeEE-EEec-Cce-EEE---ecCeEEEEEcCCceeeeEee--
Q 015650 149 PDPQYPLNKVMIWDDHQSR-------CIGELS--FRSEVRSV-KLRR-DRI-IVV---LEQKIFVYNFADLKLLHQIE-- 211 (403)
Q Consensus 149 ~d~~~~~~~i~iwd~~~~~-------~~~~~~--~~~~i~~~-~~~~-~~~-~~~---~d~~i~i~d~~~~~~~~~~~-- 211 (403)
.| |.|.+.++...+ ..+... ..+.+.++ ++.. ++. .++ ..+.|..||++.......++
T Consensus 1118 ~D-----G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1118 KD-----GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred CC-----CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 88 999999987621 111111 23344433 2322 122 233 36789999998865555443
Q ss_pred ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEE--eecCCceEEEEEcC---CCCEEEEEeC--CCcEEE
Q 015650 212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI--MAHDSRIACFALTQ---DGQLLATSST--KGTLVR 284 (403)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~--~~~~~~i~~~~~sp---~g~~l~s~~~--dg~~i~ 284 (403)
...+.++.+++++.+..+++ |...|.+.+||++-+....- .++..+|..+..+| .....++++. .+. |.
T Consensus 1193 ~~hG~vTSi~idp~~~Wlvi---Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne-vs 1268 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVI---GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE-VS 1268 (1431)
T ss_pred ccccceeEEEecCCceEEEE---ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc-ee
Confidence 23466788999998874443 45779999999998664332 34557788877776 3345555544 445 99
Q ss_pred EEEcCCCcEEEEEecC-----------------CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650 285 IFNTLDGTLLQEVRRG-----------------ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (403)
Q Consensus 285 iwd~~~~~~~~~~~~~-----------------~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~ 338 (403)
+|++.+|.+...+... .+.-......+..-+..+.+|+.|..|+.||....+.-
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 9999999877766542 01111222334444568889999999999999988754
No 244
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=3.9e-11 Score=105.84 Aligned_cols=271 Identities=16% Similarity=0.176 Sum_probs=173.3
Q ss_pred eEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCC------CCceEEEE
Q 015650 88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY------PLNKVMIW 161 (403)
Q Consensus 88 i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~------~~~~i~iw 161 (403)
=+.+.|||-|.||++-...||.+|--...... +.+. | ..+.-+.|+|+..+|++-+..+.- ....++||
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~--~RF~--H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRI--QRFY--H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHH--Hhcc--C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 36789999999999999999999965444433 4443 3 457788899999999987754332 23689999
Q ss_pred ECCCCceeEEEe-c--CCc-eeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC
Q 015650 162 DDHQSRCIGELS-F--RSE-VRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (403)
Q Consensus 162 d~~~~~~~~~~~-~--~~~-i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 235 (403)
|+.+|...+.+. . ... -.-+.|+.|+++++ ..+.|.||+.....++..-......|....|+|.+.-+...+.-
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 999999988887 2 222 23568999999999 57899999977644433322334566777888876533322211
Q ss_pred C--ccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeC----------CCcEEEEEEcCCCcE-EEEEecCC
Q 015650 236 L--QKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSST----------KGTLVRIFNTLDGTL-LQEVRRGA 301 (403)
Q Consensus 236 ~--~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~----------dg~~i~iwd~~~~~~-~~~~~~~~ 301 (403)
. .-..+.+..+..++ ++...-+.-.=..+-|-.+|.+|+.--. -.. +.|+.++.... +..+.
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n-~eIfrireKdIpve~ve--- 443 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN-LEIFRIREKDIPVEVVE--- 443 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEee-EEEEEeeccCCCceeee---
Confidence 1 11234444444432 2222223222234556677888874221 112 66776655432 33333
Q ss_pred CcccEEEEEeCCCCCEEEEEe---CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEE
Q 015650 302 DRAEIYSLAFSSNAQWLAVSS---DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL 378 (403)
Q Consensus 302 ~~~~v~~l~~s~d~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (403)
-...|...+|-|.|..+++-+ ...++.+|.+++......+ + ..+
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l---------------------V------------k~~ 490 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL---------------------V------------KEL 490 (698)
T ss_pred cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh---------------------h------------hhh
Confidence 346899999999999887665 3457999999863321111 1 223
Q ss_pred eCCCceEEEeccCCCEEEEEcc
Q 015650 379 VEGSPYIVAFGHQKNTVVILGM 400 (403)
Q Consensus 379 ~~~~~~~~~fs~d~~~l~~~~~ 400 (403)
.....+.|-|+|.|+++++++.
T Consensus 491 dk~~~N~vfwsPkG~fvvva~l 512 (698)
T KOG2314|consen 491 DKKFANTVFWSPKGRFVVVAAL 512 (698)
T ss_pred cccccceEEEcCCCcEEEEEEe
Confidence 3346677999999999998864
No 245
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.2e-11 Score=104.43 Aligned_cols=239 Identities=12% Similarity=0.067 Sum_probs=167.8
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (403)
Q Consensus 81 ~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~ 159 (403)
-..|...|.|++|....+.|.+|. +++|.+.|+++.+.+....-. .....|..+..+|....+++..++ +.|.
T Consensus 101 ~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~-~~~~~VY~m~~~P~DN~~~~~t~~-----~~V~ 174 (609)
T KOG4227|consen 101 EHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANEN-NNRGDVYHMDQHPTDNTLIVVTRA-----KLVS 174 (609)
T ss_pred cCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeeccc-CcccceeecccCCCCceEEEEecC-----ceEE
Confidence 345678999999999999999998 455999999988776443222 334589999999987778888887 9999
Q ss_pred EEECCCCc-ee---EEEecCCceeEEEEecCceEEE----ecCeEEEEEcCCcee-eeE------eeccCCCceeEEEee
Q 015650 160 IWDDHQSR-CI---GELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKL-LHQ------IETIANPKGLCAVSQ 224 (403)
Q Consensus 160 iwd~~~~~-~~---~~~~~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~-~~~------~~~~~~~~~~~~~~~ 224 (403)
+||.+... .+ ..-........+.|+|....++ ..+-+.+||++..+. +.. +......-....|++
T Consensus 175 ~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~ 254 (609)
T KOG4227|consen 175 FIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP 254 (609)
T ss_pred EEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC
Confidence 99987764 22 2222567788899999754333 366799999876421 111 111111124578899
Q ss_pred CCCeEEEEeeCCccCeEEEEEccCCceeEEee-cC-------CceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC-----
Q 015650 225 GVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-HD-------SRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----- 291 (403)
Q Consensus 225 ~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~-~~-------~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~----- 291 (403)
.+.+++.+- ....-.+||+-.+++..++. |. ..+.+++|.-|-. +++|+.+-. |++|.+...
T Consensus 255 ~G~Q~msiR---R~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~-i~~WklP~~~ds~G 329 (609)
T KOG4227|consen 255 SGNQFMSIR---RGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWG-IHIWKLPRANDSYG 329 (609)
T ss_pred CCCeehhhh---ccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccc-eEEEecCCCccccC
Confidence 888765442 33445678888766555542 32 2466788875554 889999988 999987421
Q ss_pred ------------------cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEe
Q 015650 292 ------------------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL 332 (403)
Q Consensus 292 ------------------~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~ 332 (403)
+.+..+++ |...++.+.|+|...+|++.+-.+.++||.-
T Consensus 330 ~~~IG~~~~~~~~~~~i~~~~~VLrG--HRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 330 FTQIGHDEEEMPSEIFIEKELTVLRG--HRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ccccCcchhhCchhheecceeEEEec--ccccccceeecCCcceEeccchhhheecccc
Confidence 12334554 7789999999999999999999999999964
No 246
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=4.8e-11 Score=109.47 Aligned_cols=224 Identities=8% Similarity=-0.073 Sum_probs=138.7
Q ss_pred CCCCeEEEEEcCCCCE--EE-EEcCC-c--EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650 84 PPPTLLHISFNQDHGC--FA-AGTDH-G--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (403)
Q Consensus 84 ~~~~i~~i~~s~d~~~--l~-~~~~~-~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (403)
....+..-+|+|||+. ++ +...+ . |.+.++++++......+. .......|+||+..++.........+-.
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~----g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ----GNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC----CCccceEECCCCCEEEEEECCCCCccee
Confidence 4455667799999975 32 33322 2 888888777655433343 2334578999986655432210011133
Q ss_pred EEEEECCCC---ceeEEEec-CCceeEEEEecCceEEE--e--cC--eEEEEEcCC-ceeeeEeeccCCCceeEEEeeCC
Q 015650 158 VMIWDDHQS---RCIGELSF-RSEVRSVKLRRDRIIVV--L--EQ--KIFVYNFAD-LKLLHQIETIANPKGLCAVSQGV 226 (403)
Q Consensus 158 i~iwd~~~~---~~~~~~~~-~~~i~~~~~~~~~~~~~--~--d~--~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~ 226 (403)
+.+|++..+ +..+.... .......+|+|||..++ . ++ .|+++++.. +.....+......+....|+|++
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG 338 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG 338 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence 445776653 33333322 23446789999998776 2 34 455556542 23334444444556778999999
Q ss_pred CeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeC---CCcEEEEEEcCCCcEEEEEecCCCc
Q 015650 227 GSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTLLQEVRRGADR 303 (403)
Q Consensus 227 ~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~---dg~~i~iwd~~~~~~~~~~~~~~~~ 303 (403)
+.++++........|.+||+.++....+......+....|+|||+.|+.... ... |+++|+..++...... ..
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~-L~~vdl~~g~~~~Lt~---~~ 414 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESE-LYLISLITKKTRKIVI---GS 414 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCce-EEEEECCCCCEEEeec---CC
Confidence 9776654222235799999999887777655556788999999998875443 235 8899998877655444 23
Q ss_pred ccEEEEEeCCCC
Q 015650 304 AEIYSLAFSSNA 315 (403)
Q Consensus 304 ~~v~~l~~s~d~ 315 (403)
+.+...+|+|-.
T Consensus 415 g~~~~p~Ws~~~ 426 (428)
T PRK01029 415 GEKRFPSWGAFP 426 (428)
T ss_pred CcccCceecCCC
Confidence 456778888753
No 247
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=3.7e-11 Score=106.15 Aligned_cols=232 Identities=11% Similarity=0.170 Sum_probs=161.7
Q ss_pred EEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC--e--EEEeeCCCCCCCCCceEEEEECC
Q 015650 89 LHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--I--LALVGGGPDPQYPLNKVMIWDDH 164 (403)
Q Consensus 89 ~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~--~~~~s~~~d~~~~~~~i~iwd~~ 164 (403)
++..|++|..+.|--..+.+.+|+....+... ..+ |...+..+.+++. - .++..-..+ -.+..|+||...
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~-~kl---~~~~i~~f~lSpgp~~~~vAvyvPe~k--GaPa~vri~~~~ 202 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQ-HKL---SVSGITMLSLSPGPEPPFVAVYVPEKK--GAPASVRIYKYP 202 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCcccee-eee---eccceeeEEecCCCCCceEEEEccCCC--CCCcEEEEeccc
Confidence 68899999887766667779999987754432 334 4566777777664 2 222222221 123789999876
Q ss_pred CCceeEEE---e-cCCceeEEEEecCceEEE------e---------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeC
Q 015650 165 QSRCIGEL---S-FRSEVRSVKLRRDRIIVV------L---------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQG 225 (403)
Q Consensus 165 ~~~~~~~~---~-~~~~i~~~~~~~~~~~~~------~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (403)
....-..+ . +...=..+.|++-|.-+. . +.+++++++....+...+ ...++|..+.|+++
T Consensus 203 ~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s 281 (566)
T KOG2315|consen 203 EEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPS 281 (566)
T ss_pred cccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCC
Confidence 33221111 1 333444677887554322 1 347999998744444333 34789999999999
Q ss_pred CCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeC---CCcEEEEEEcCCCcEEEEEecCCC
Q 015650 226 VGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTLLQEVRRGAD 302 (403)
Q Consensus 226 ~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~---dg~~i~iwd~~~~~~~~~~~~~~~ 302 (403)
+..+.++. |-.-..+.+||++...+..+. .++=+++-|+|.|++|+.++- .|. |.|||+.+.+++..+..
T Consensus 282 ~~EF~Vvy-GfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~n~K~i~~~~a--- 354 (566)
T KOG2315|consen 282 GREFAVVY-GFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVPNRKLIAKFKA--- 354 (566)
T ss_pred CCEEEEEE-ecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCc-eEEEeccchhhcccccc---
Confidence 98876665 777889999999987766553 556678999999999988775 467 99999999999888874
Q ss_pred cccEEEEEeCCCCCEEEEEe------CCCcEEEEEeecC
Q 015650 303 RAEIYSLAFSSNAQWLAVSS------DKGTVHVFNLKVN 335 (403)
Q Consensus 303 ~~~v~~l~~s~d~~~l~s~~------~dg~v~iwd~~~~ 335 (403)
..-+-+.|+|||++|+|++ .|+.++||++.-.
T Consensus 355 -~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 355 -ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred -CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 3456689999999999886 3788999998643
No 248
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=2.1e-10 Score=104.60 Aligned_cols=173 Identities=12% Similarity=0.054 Sum_probs=117.2
Q ss_pred ceEEEEECCCCceeEEEecCCceeEEEEecCceE-EE---e---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRII-VV---L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~---~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (403)
..|.+-|.... ..+.+.....+....|+|||.. ++ . +..|+++|+.+++...... ..+......|+||++.
T Consensus 169 ~~l~~~d~dg~-~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 169 SNIVLADYTLT-YQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK 246 (419)
T ss_pred ceEEEECCCCC-ceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence 46777675433 3444443347788999999974 44 1 3469999998886554433 3444556789999998
Q ss_pred EEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCC-C--cEEEEEEcCCCcEEEEEecCCCccc
Q 015650 229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-G--TLVRIFNTLDGTLLQEVRRGADRAE 305 (403)
Q Consensus 229 ~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d-g--~~i~iwd~~~~~~~~~~~~~~~~~~ 305 (403)
+++......+..|.++|+.++....+..+........|+|||+.|+..+.. + . |++.|+.+++..+....+ .
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~-Iy~~dl~~g~~~rlt~~g---~- 321 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPN-IFMKKLNSGSVEQVVFHG---K- 321 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCce-EEEEECCCCCeEeCccCC---C-
Confidence 877664334577888898888777776555444566899999988776643 2 4 888898887764443321 1
Q ss_pred EEEEEeCCCCCEEEEEeCC---------CcEEEEEeecCC
Q 015650 306 IYSLAFSSNAQWLAVSSDK---------GTVHVFNLKVNS 336 (403)
Q Consensus 306 v~~l~~s~d~~~l~s~~~d---------g~v~iwd~~~~~ 336 (403)
....|+|||++|+..+.. ..|++.|+++++
T Consensus 322 -~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 322 -NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred -cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 124899999998876643 257777776665
No 249
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.43 E-value=1.1e-09 Score=95.85 Aligned_cols=236 Identities=12% Similarity=0.052 Sum_probs=151.6
Q ss_pred EcCCCCEEEEEcC-----------CcEEEEEcCCCeeEEEEecccC----cceeEEEEeeeCCeEEEeeCC-C-CCCCCC
Q 015650 93 FNQDHGCFAAGTD-----------HGFRIYNCDPFREIFRRDFERG----GGIGVVEMLFRCNILALVGGG-P-DPQYPL 155 (403)
Q Consensus 93 ~s~d~~~l~~~~~-----------~~i~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~s~~-~-d~~~~~ 155 (403)
++|||+.|.++.. +.|.+||..+.+......+... ....-..+.+++++..++... . +
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~----- 127 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPS----- 127 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCC-----
Confidence 9999998876654 3499999999887744443211 012334677888887666443 2 4
Q ss_pred ceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-ecCeEEEEEcCC-ceee-eE---eeccCCCce-eEEEee-CCC
Q 015650 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFAD-LKLL-HQ---IETIANPKG-LCAVSQ-GVG 227 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~-~~~~-~~---~~~~~~~~~-~~~~~~-~~~ 227 (403)
..|.+.|+.+++.+.++.-.....-...+++...+. .||......+.+ ++.. .. +.....++. .-.+.+ ++.
T Consensus 128 ~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~ 207 (352)
T TIGR02658 128 PAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR 207 (352)
T ss_pred CEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence 899999999999999998555444444444444333 566655544433 2211 11 111000000 003455 554
Q ss_pred eEEEEeeCCccCeEEEEEccCCceeE------Ee-------ecCCceEEEEEcCCCCEEEEEeC----------CCcEEE
Q 015650 228 SLVLVCPGLQKGQVRVEHYASKRTKF------IM-------AHDSRIACFALTQDGQLLATSST----------KGTLVR 284 (403)
Q Consensus 228 ~~~~~~~g~~d~~i~v~d~~~~~~~~------~~-------~~~~~i~~~~~sp~g~~l~s~~~----------dg~~i~ 284 (403)
.+ +++ ..|.|.+.|+....... +. -..+.+.-+++++++++|+.... .+. |.
T Consensus 208 ~~-~vs---~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~-V~ 282 (352)
T TIGR02658 208 LV-WPT---YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF-LF 282 (352)
T ss_pred EE-EEe---cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE-EE
Confidence 44 443 33999999975532211 11 12334455999999999887431 134 99
Q ss_pred EEEcCCCcEEEEEecCCCcccEEEEEeCCCCC-EEEEEe-CCCcEEEEEeecCCCCCCC
Q 015650 285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVNSGSARS 341 (403)
Q Consensus 285 iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~~-~dg~v~iwd~~~~~~~~~~ 341 (403)
++|..+++.+..+..+ ..+..|+++||++ +|++.. .++.|.++|+.+++...++
T Consensus 283 ViD~~t~kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 283 VVDAKTGKRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEECCCCeEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 9999999999999853 5899999999999 877666 6788999999999864443
No 250
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=2.2e-09 Score=90.50 Aligned_cols=261 Identities=11% Similarity=0.052 Sum_probs=166.4
Q ss_pred CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC--CceeEEE--e-cCCcee
Q 015650 105 DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ--SRCIGEL--S-FRSEVR 179 (403)
Q Consensus 105 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~--~~~~~~~--~-~~~~i~ 179 (403)
+.+|.+|++++....+............+-+.++++...|.++..+.. .|.|.-|.+.. |++...- . ...+..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~--~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE--EGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCC--cCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 456999999844332211111246667788889998865555433200 27777777764 4433222 2 334448
Q ss_pred EEEEecCceEEE----ecCeEEEEEcCC-ceeeeE--eeccCCC----------ceeEEEeeCCCeEEEEeeCCccCeEE
Q 015650 180 SVKLRRDRIIVV----LEQKIFVYNFAD-LKLLHQ--IETIANP----------KGLCAVSQGVGSLVLVCPGLQKGQVR 242 (403)
Q Consensus 180 ~~~~~~~~~~~~----~d~~i~i~d~~~-~~~~~~--~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~d~~i~ 242 (403)
.+++++++++++ ..|.|.++-++. |.+... +..|... +....+.|+++.++...-| --.|.
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG--~Dri~ 170 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG--TDRIF 170 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC--CceEE
Confidence 899999998888 368999999865 432211 1122222 5667888988865544433 34789
Q ss_pred EEEccCCceeEEe----ecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCC-cEEEEEec------C-CCcccEEEE
Q 015650 243 VEHYASKRTKFIM----AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDG-TLLQEVRR------G-ADRAEIYSL 309 (403)
Q Consensus 243 v~d~~~~~~~~~~----~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~-~~~~~~~~------~-~~~~~v~~l 309 (403)
+|++..+.+.... .....-..|.|+|++++.+..++ +++ |.+|..... ..+..++. . .......+|
T Consensus 171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~st-V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNST-VDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCE-EEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence 9999876553322 33455789999999999887766 667 999998763 22222221 1 122467789
Q ss_pred EeCCCCCEEEEEe-CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCC-CceEEE
Q 015650 310 AFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG-SPYIVA 387 (403)
Q Consensus 310 ~~s~d~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 387 (403)
..++||++|.++. ....|.+|.++....... +......++ ....+.
T Consensus 250 his~dGrFLYasNRg~dsI~~f~V~~~~g~L~--------------------------------~~~~~~teg~~PR~F~ 297 (346)
T COG2706 250 HISPDGRFLYASNRGHDSIAVFSVDPDGGKLE--------------------------------LVGITPTEGQFPRDFN 297 (346)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEcCCCCEEE--------------------------------EEEEeccCCcCCccce
Confidence 9999999998875 344788888877653111 111222233 377789
Q ss_pred eccCCCEEEEEccCC
Q 015650 388 FGHQKNTVVILGMDG 402 (403)
Q Consensus 388 fs~d~~~l~~~~~dG 402 (403)
|++.|++|+++.+|+
T Consensus 298 i~~~g~~Liaa~q~s 312 (346)
T COG2706 298 INPSGRFLIAANQKS 312 (346)
T ss_pred eCCCCCEEEEEccCC
Confidence 999999999998876
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.41 E-value=1.4e-11 Score=116.14 Aligned_cols=187 Identities=13% Similarity=0.147 Sum_probs=133.8
Q ss_pred CceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCc-e-eEEEeeCCCeEEEEeeCCccCeEEEEEccCCc
Q 015650 176 SEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPK-G-LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR 250 (403)
Q Consensus 176 ~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~ 250 (403)
..|....+..+...++ .++.+.+||...+.....+....... . .+-+-...+.+++++ |+--+.|.+|+.....
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~-gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIAS-GSVFGEIIVWKPHEDN 166 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEe-ccccccEEEEeccccC
Confidence 3344444444444444 58899999988776665554322211 1 122223445666665 6688999999987533
Q ss_pred -eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEE
Q 015650 251 -TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV 329 (403)
Q Consensus 251 -~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~i 329 (403)
...+.+|++.|.++.++.||+++++.|.|.+ +++|++.+.+.....- -.|...|+.+.|.|+ .+++++.|.+.++
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~-fgHsaRvw~~~~~~n--~i~t~gedctcrv 242 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRS-IRLWPIDSREVLGCTG-FGHSARVWACCFLPN--RIITVGEDCTCRV 242 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEecCcc-eeeeecccccccCccc-ccccceeEEEEeccc--eeEEeccceEEEE
Confidence 3358899999999999999999999999999 9999999988776221 238899999999998 9999999999999
Q ss_pred EEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeC-CCceEEEeccCCCEEEEEccCCC
Q 015650 330 FNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE-GSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
|+.+-.+.. .++.|. +.+..++.+++...+++++.||+
T Consensus 243 W~~~~~~l~------------------------------------~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~ 281 (967)
T KOG0974|consen 243 WGVNGTQLE------------------------------------VYDEHSGKGIWKIAVPIGVIIKVTGGNDST 281 (967)
T ss_pred Eecccceeh------------------------------------hhhhhhhcceeEEEEcCCceEEEeeccCcc
Confidence 965544310 122222 36777888888888888888874
No 252
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=6.7e-12 Score=124.18 Aligned_cols=192 Identities=13% Similarity=0.107 Sum_probs=150.1
Q ss_pred cceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEE---ecCeEEEEEcC
Q 015650 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA 202 (403)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~ 202 (403)
+-..+.++.-+|...+.++++.| |.+++|....++.+..+. ....|+.+.|+.+|.... .||.+.+|...
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~d-----gsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQD-----GSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCC-----ceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence 44567777778888889999999 999999999999988887 568899999999887655 69999999976
Q ss_pred CceeeeEeeccCCCceeEEEeeCCCeEEEEeeC--CccCeEEEEEccC--CceeEEeecCCceEEEEEcCCCCEEEEEeC
Q 015650 203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG--LQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSST 278 (403)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~ 278 (403)
.+.....+.|......+.|-. . .++++| ..++.+.+||... ..-..-..|.+.++++++.|...+|++|+.
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred -CcceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC
Confidence 455555566666555555544 2 234333 4678999999655 222233789999999999999999999999
Q ss_pred CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCC
Q 015650 279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE 342 (403)
Q Consensus 279 dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 342 (403)
+|. |++||++..+++.++.. +. ...++++|+..|.++||++.....+..+.
T Consensus 2357 ~G~-v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2357 KGE-VCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred cCc-EEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 999 99999998887766652 33 55689999999999999999987655543
No 253
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=7.5e-11 Score=107.14 Aligned_cols=232 Identities=15% Similarity=0.159 Sum_probs=164.9
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCee-------------EEEEecccCcceeEEEEeeeCCeEEEe
Q 015650 80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE-------------IFRRDFERGGGIGVVEMLFRCNILALV 145 (403)
Q Consensus 80 ~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~~ 145 (403)
+.........|+.|+.+..++|+|+.+| ++|..+++... ...+++. +|+..|.-+.|+.+...+.
T Consensus 9 i~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLe-GH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 9 IGIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE-GHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred cCCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhc-cCcceEEEEEecccccccc
Confidence 3344556789999999999999999666 89988754321 1224555 8999999999999999999
Q ss_pred eCCCCCCCCCceEEEEECCCCceeEEEe---cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCcee
Q 015650 146 GGGPDPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGL 219 (403)
Q Consensus 146 s~~~d~~~~~~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 219 (403)
+++.+ |-|.+|-+-.|.-..++. ..+-|.+++|+.||..++ .||.|.+=.+.. ..+.--+-.......
T Consensus 88 tSDt~-----GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG-NRIwgKeLkg~~l~h 161 (1189)
T KOG2041|consen 88 TSDTS-----GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG-NRIWGKELKGQLLAH 161 (1189)
T ss_pred ccCCC-----ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc-ceecchhcchheccc
Confidence 99998 999999998886554443 567899999999998776 588888776643 222221111223356
Q ss_pred EEEeeCCCeEEEEeeCCccCeEEEEEccCCce--------eEE----eecCCceEEEEEc--------CCCCEEEEEeCC
Q 015650 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT--------KFI----MAHDSRIACFALT--------QDGQLLATSSTK 279 (403)
Q Consensus 220 ~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~--------~~~----~~~~~~i~~~~~s--------p~g~~l~s~~~d 279 (403)
+.|++|.+..++. -.+|.+.+||....-. ... ......|-.+.|. ||...|+.+-.+
T Consensus 162 v~ws~D~~~~Lf~---~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n 238 (1189)
T KOG2041|consen 162 VLWSEDLEQALFK---KANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN 238 (1189)
T ss_pred eeecccHHHHHhh---hcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence 7888888765544 3679999999876211 111 1122235555554 578899999999
Q ss_pred CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 015650 280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG 325 (403)
Q Consensus 280 g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg 325 (403)
|. +.|..-.+......+.. .-.|..+.|+++|..|++++.+.
T Consensus 239 Gr-~QiMR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 239 GR-MQIMRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred ce-ehhhhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCcc
Confidence 98 88886555544445553 25789999999999999998654
No 254
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=4.8e-11 Score=100.88 Aligned_cols=224 Identities=14% Similarity=0.157 Sum_probs=155.7
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCe--eEEEEecccCcceeEEEEeeeCCeEE-EeeCCCCCCCCCc
Q 015650 80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCNILA-LVGGGPDPQYPLN 156 (403)
Q Consensus 80 ~~~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~-~~s~~~d~~~~~~ 156 (403)
........|-.++.. ||.++.+-+++.+.+|....+. ......+. ....+..+.-.+.... +++|+..- -.
T Consensus 100 ~~~l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~---~n 173 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKEN---IN 173 (412)
T ss_pred ccccccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeee--cCCceeeeccCCCCCceEecCchhc---cc
Confidence 445556677777664 5666666556669999987332 11112222 2234444444444333 34354320 14
Q ss_pred eEEEEECCCCceeEEEe----------cCCceeEEEEecC--ceEEE---ecCeEEEEEcCCc-eeeeEeeccCCCceeE
Q 015650 157 KVMIWDDHQSRCIGELS----------FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADL-KLLHQIETIANPKGLC 220 (403)
Q Consensus 157 ~i~iwd~~~~~~~~~~~----------~~~~i~~~~~~~~--~~~~~---~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~ 220 (403)
.++|||+++.+.+..-+ -+-.++++.|-+. ...++ --+.+++||.+.+ +++..+.....++.++
T Consensus 174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~ 253 (412)
T KOG3881|consen 174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST 253 (412)
T ss_pred ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence 69999999886655433 1234567888776 55555 2679999999875 5678888888999999
Q ss_pred EEeeCCCeEEEEeeCCccCeEEEEEccCCcee--EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 015650 221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR 298 (403)
Q Consensus 221 ~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~ 298 (403)
...|+++.+|+ |...+.+..||++.+.+. .+.+-.+.|++|..+|.+.+|++++-|.. |||+|+++.+++....
T Consensus 254 ~l~p~gn~Iy~---gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 254 GLTPSGNFIYT---GNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIKTRKLLHKVY 329 (412)
T ss_pred eecCCCcEEEE---ecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecccchhhhhhh
Confidence 99999986544 457799999999997753 36778899999999999999999999999 9999999988877666
Q ss_pred cCCCcccEEEEEeCCCCC
Q 015650 299 RGADRAEIYSLAFSSNAQ 316 (403)
Q Consensus 299 ~~~~~~~v~~l~~s~d~~ 316 (403)
. ...+++|.+.++-.
T Consensus 330 v---Ks~lt~il~~~~~n 344 (412)
T KOG3881|consen 330 V---KSRLTFILLRDDVN 344 (412)
T ss_pred h---hccccEEEecCCcc
Confidence 3 35677777765433
No 255
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.36 E-value=1.2e-08 Score=89.49 Aligned_cols=241 Identities=10% Similarity=0.096 Sum_probs=144.5
Q ss_pred CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeE--EEeeCC--------CCCCCCCceEEEEECCCCceeEEEecC
Q 015650 106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL--ALVGGG--------PDPQYPLNKVMIWDDHQSRCIGELSFR 175 (403)
Q Consensus 106 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~--------~d~~~~~~~i~iwd~~~~~~~~~~~~~ 175 (403)
+.|.+.|.++.+.+ ..+..+..... + +++++. +++... ++ ..|.+||..+.+.+.++...
T Consensus 27 ~~v~ViD~~~~~v~--g~i~~G~~P~~--~-~spDg~~lyva~~~~~R~~~G~~~-----d~V~v~D~~t~~~~~~i~~p 96 (352)
T TIGR02658 27 TQVYTIDGEAGRVL--GMTDGGFLPNP--V-VASDGSFFAHASTVYSRIARGKRT-----DYVEVIDPQTHLPIADIELP 96 (352)
T ss_pred ceEEEEECCCCEEE--EEEEccCCCce--e-ECCCCCEEEEEeccccccccCCCC-----CEEEEEECccCcEEeEEccC
Confidence 45999998887655 44442222222 2 566544 343330 33 79999999999999998843
Q ss_pred Cc--------eeEEEEecCceEEE----e-cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEE
Q 015650 176 SE--------VRSVKLRRDRIIVV----L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR 242 (403)
Q Consensus 176 ~~--------i~~~~~~~~~~~~~----~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 242 (403)
.. ...++++|||++++ . ++.|.++|+.+++.+.++.... ....+..+ +.. .++.| .||...
T Consensus 97 ~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~-e~~-~~~~~---~Dg~~~ 170 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTA-NDT-FFMHC---RDGSLA 170 (352)
T ss_pred CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEec-CCc-cEEEe---ecCceE
Confidence 32 33789999998777 2 6899999999999999887532 22222221 111 12222 344444
Q ss_pred EEEccC-Cce-----eEEeecCCceE-EEEEcC-CCCEEEEEeCCCcEEEEEEcCC-----CcEEEEEec-----CCCcc
Q 015650 243 VEHYAS-KRT-----KFIMAHDSRIA-CFALTQ-DGQLLATSSTKGTLVRIFNTLD-----GTLLQEVRR-----GADRA 304 (403)
Q Consensus 243 v~d~~~-~~~-----~~~~~~~~~i~-~~~~sp-~g~~l~s~~~dg~~i~iwd~~~-----~~~~~~~~~-----~~~~~ 304 (403)
...+.. ++. ..+.....++. .-.|.+ +|++++.... |. |.+.|+.. .+....+.. +...+
T Consensus 171 ~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~-V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~ 248 (352)
T TIGR02658 171 KVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GK-IFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG 248 (352)
T ss_pred EEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-Ce-EEEEecCCCcceecceeeeccccccccccCCC
Confidence 433332 111 11111001100 004455 8888877666 88 99999543 333333221 12334
Q ss_pred cEEEEEeCCCCCEEEEEe----------CCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeE
Q 015650 305 EIYSLAFSSNAQWLAVSS----------DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA 374 (403)
Q Consensus 305 ~v~~l~~s~d~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (403)
.+.-++++++++++++.. ..+.|.++|..+++. +.
T Consensus 249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv-----------------------------------i~ 293 (352)
T TIGR02658 249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR-----------------------------------LR 293 (352)
T ss_pred cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE-----------------------------------EE
Confidence 555699999999888753 124788889888873 22
Q ss_pred EEEEeCCCceEEEeccCCC-EEEEEcc
Q 015650 375 QFRLVEGSPYIVAFGHQKN-TVVILGM 400 (403)
Q Consensus 375 ~~~~~~~~~~~~~fs~d~~-~l~~~~~ 400 (403)
++.. +..+..++|+||++ .|++.+.
T Consensus 294 ~i~v-G~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 294 KIEL-GHEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred EEeC-CCceeeEEECCCCCeEEEEeCC
Confidence 2222 45778899999999 8877663
No 256
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.32 E-value=2.1e-08 Score=85.60 Aligned_cols=221 Identities=15% Similarity=0.081 Sum_probs=144.3
Q ss_pred EEeeeC-CeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEe-cCceEEE-ecCeEEEEEcCCceeeeEe
Q 015650 134 EMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLR-RDRIIVV-LEQKIFVYNFADLKLLHQI 210 (403)
Q Consensus 134 ~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~-~d~~i~i~d~~~~~~~~~~ 210 (403)
...|.+ ++.++++.-.. +.|..|+..+++.. .+.... ...+.+. +++.+++ ..+.+.++|+.+++.....
T Consensus 4 gp~~d~~~g~l~~~D~~~-----~~i~~~~~~~~~~~-~~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPG-----GRIYRVDPDTGEVE-VIDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTT-----TEEEEEETTTTEEE-EEESSS-EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCC-----CEEEEEECCCCeEE-EEecCC-CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEe
Confidence 356665 56666665555 89999998776543 344333 7777887 7888777 5667888899888654444
Q ss_pred ec-----cCCCceeEEEeeCCCeEEEEeeCCcc------CeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEE-EeC
Q 015650 211 ET-----IANPKGLCAVSQGVGSLVLVCPGLQK------GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLAT-SST 278 (403)
Q Consensus 211 ~~-----~~~~~~~~~~~~~~~~~~~~~~g~~d------~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s-~~~ 278 (403)
.. .......+++.++++ +++...+... |.|..++.. +....+...-...+.|+|+|+++.|+. -+.
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred eccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccc
Confidence 33 122345678888876 5555433211 567777777 555555555566789999999998765 455
Q ss_pred CCcEEEEEEcCCC-c-E--EEEE-ecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcc
Q 015650 279 KGTLVRIFNTLDG-T-L--LQEV-RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT 353 (403)
Q Consensus 279 dg~~i~iwd~~~~-~-~--~~~~-~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (403)
.+. |..|++... . . .+.+ ......+..-.+++..+|+++++....+.|.+++.+ ++.
T Consensus 155 ~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~---------------- 216 (246)
T PF08450_consen 155 NGR-IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL---------------- 216 (246)
T ss_dssp TTE-EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE----------------
T ss_pred cce-eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE----------------
Confidence 566 888888532 2 1 1222 211112347889999999988888889999999977 552
Q ss_pred cccccccccccceeeeeeeeEEEEEeCCCceEEEe-ccCCCEEEEEcc
Q 015650 354 SSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAF-GHQKNTVVILGM 400 (403)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-s~d~~~l~~~~~ 400 (403)
...+..+...++.++| .++.+.|++.++
T Consensus 217 -------------------~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 217 -------------------LREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp -------------------EEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred -------------------EEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 3446777668999999 578888887764
No 257
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.31 E-value=1.6e-08 Score=102.41 Aligned_cols=236 Identities=11% Similarity=0.127 Sum_probs=150.9
Q ss_pred EEEEEcCC-CCEEEEEcCCc-EEEEEcCCCeeEEEEeccc-C------------cceeEEEEeeeCCeE-EEeeCCCCCC
Q 015650 89 LHISFNQD-HGCFAAGTDHG-FRIYNCDPFREIFRRDFER-G------------GGIGVVEMLFRCNIL-ALVGGGPDPQ 152 (403)
Q Consensus 89 ~~i~~s~d-~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~-~------------~~~~v~~~~~~~~~~-~~~s~~~d~~ 152 (403)
..++++++ +.++++-..+. |++|+....... .+.. + .-.....+++.+++. ++++....
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~---~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n-- 645 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIV---QIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN-- 645 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEE---EEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC--
Confidence 46788875 55555555444 999997643221 2210 0 011245677776543 33433333
Q ss_pred CCCceEEEEECCCCceeEEEec------------------CCceeEEEEec-CceEEE---ecCeEEEEEcCCceeeeEe
Q 015650 153 YPLNKVMIWDDHQSRCIGELSF------------------RSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQI 210 (403)
Q Consensus 153 ~~~~~i~iwd~~~~~~~~~~~~------------------~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~ 210 (403)
+.|+++|..++. +.++.. -.....++++| ++.+++ .++.|++||..++... .+
T Consensus 646 ---~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~ 720 (1057)
T PLN02919 646 ---HALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VF 720 (1057)
T ss_pred ---ceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EE
Confidence 689999987654 333310 11345799999 455544 3678999998776432 22
Q ss_pred ecc---------------CCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEee--------------c----
Q 015650 211 ETI---------------ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--------------H---- 257 (403)
Q Consensus 211 ~~~---------------~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~--------------~---- 257 (403)
.+. ......++++++++.++++- ..++.|++||+.++....+.+ +
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD--s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g 798 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD--SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG 798 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEE--CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence 111 11224588999988777765 457899999998754332211 0
Q ss_pred ----CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC-----------CcccEEEEEeCCCCCEEEEEe
Q 015650 258 ----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLAVSS 322 (403)
Q Consensus 258 ----~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~l~~s~d~~~l~s~~ 322 (403)
-.....++++++|+++++-..++. |++||..++........+. .-.....|+++++|+++++-+
T Consensus 799 ~~~~l~~P~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt 877 (1057)
T PLN02919 799 SEVLLQHPLGVLCAKDGQIYVADSYNHK-IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT 877 (1057)
T ss_pred hhhhccCCceeeEeCCCcEEEEECCCCE-EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC
Confidence 112468899999998888888888 9999998776654332110 112567899999999888888
Q ss_pred CCCcEEEEEeecCCC
Q 015650 323 DKGTVHVFNLKVNSG 337 (403)
Q Consensus 323 ~dg~v~iwd~~~~~~ 337 (403)
.++.|++||+++++.
T Consensus 878 ~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 878 NNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCEEEEEECCCCcc
Confidence 999999999998764
No 258
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.31 E-value=7.6e-10 Score=90.38 Aligned_cols=219 Identities=12% Similarity=0.120 Sum_probs=142.1
Q ss_pred EEEEEcCCCeeEEEEecccCcceeEEEEeeeC---CeE-EEeeCCCCCCCCCceEEEEECCCCceeEEEec-------CC
Q 015650 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC---NIL-ALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF-------RS 176 (403)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~-~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~-------~~ 176 (403)
+.+|++...+......+.......+..+.|.- ++. .++-.... |.|.++..........+.. ..
T Consensus 48 l~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~-----G~i~~~r~~~~~ss~~L~~ls~~ki~~~ 122 (339)
T KOG0280|consen 48 LHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHAR-----GQIQLYRNDEDESSVHLRGLSSKKISVV 122 (339)
T ss_pred eEEEeecccccCccceeeeecccccceeeeeeccCCccceeeecccc-----ceEEEEeeccceeeeeecccchhhhhhe
Confidence 67888765544322222212334445555532 222 34444444 8899997655444444431 11
Q ss_pred ceeEEEEecCceEEE---ecCeEEEEEcCCc--eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce
Q 015650 177 EVRSVKLRRDRIIVV---LEQKIFVYNFADL--KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT 251 (403)
Q Consensus 177 ~i~~~~~~~~~~~~~---~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~ 251 (403)
...++.|++.+.-++ .+|.+.+-+.... +.++.++.|.-......|+....+ ++.+|++|+.+..||++....
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pn--lvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPN--LVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCc--eEEecCCCceEEEEEecCCcc
Confidence 244667777766655 4777776655444 334577888888888888776654 344577999999999995332
Q ss_pred e---EEeecCCceEEEEEcC-CCCEEEEEeCCCcEEEEEEcC-CCcEEEEEecCCCcccEEEEEeCCCCC--EEEEEeCC
Q 015650 252 K---FIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAFSSNAQ--WLAVSSDK 324 (403)
Q Consensus 252 ~---~~~~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~-~~~~~~~~~~~~~~~~v~~l~~s~d~~--~l~s~~~d 324 (403)
. ..+.|...|.+|.-+| .+.+|++|+.|.. |++||.+ .++++..-. ..+.|+.+.++|.-. .|+++-.+
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~~~~---v~GGVWRi~~~p~~~~~lL~~CMh~ 276 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLFKAK---VGGGVWRIKHHPEIFHRLLAACMHN 276 (339)
T ss_pred eeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCccccCc---cccceEEEEecchhhhHHHHHHHhc
Confidence 2 2456888999998876 6789999999999 9999998 466765554 447899999999543 34444444
Q ss_pred CcEEEEEeecCCCC
Q 015650 325 GTVHVFNLKVNSGS 338 (403)
Q Consensus 325 g~v~iwd~~~~~~~ 338 (403)
| .+|-+.+.+..+
T Consensus 277 G-~ki~~~~~~~~e 289 (339)
T KOG0280|consen 277 G-AKILDSSDKVLE 289 (339)
T ss_pred C-ceEEEecccccc
Confidence 4 788888776643
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.30 E-value=6.9e-10 Score=98.91 Aligned_cols=185 Identities=14% Similarity=0.109 Sum_probs=134.8
Q ss_pred CCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEee------eC--------------CeEEEeeCCCCCCC
Q 015650 95 QDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF------RC--------------NILALVGGGPDPQY 153 (403)
Q Consensus 95 ~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~------~~--------------~~~~~~s~~~d~~~ 153 (403)
|-..++|....+| ++||+...++......-...-....+...| +| +...++-|...
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~--- 79 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ--- 79 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC---
Confidence 4457888887555 999999877654322111111222222222 11 33455555555
Q ss_pred CCceEEEEECCCCceeEEEe---cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650 154 PLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (403)
Q Consensus 154 ~~~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (403)
|.|.+|++..|+.-..+. |.+.|.++.++.+-..+. .|..+..|+...++.++.+......+..++++||+.
T Consensus 80 --g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 80 --GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred --ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence 999999999999988887 899999999988877776 588999999999999999988888889999999977
Q ss_pred eEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCC-----CCEEEEEeC-CCcEEEEEEcCC
Q 015650 228 SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD-----GQLLATSST-KGTLVRIFNTLD 290 (403)
Q Consensus 228 ~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~-----g~~l~s~~~-dg~~i~iwd~~~ 290 (403)
.+.++ .++|++||+++++ +..+.+|.++|.++.|-.+ |.++.++.. +.. |.+|-+..
T Consensus 158 ~l~~a-----s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~-i~~w~v~~ 221 (541)
T KOG4547|consen 158 ILLTA-----SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG-ITVWVVEK 221 (541)
T ss_pred EEEec-----cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc-eeEEEEEc
Confidence 44333 3799999999966 4678899999999999876 677765433 334 77886543
No 260
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.30 E-value=8.6e-10 Score=98.30 Aligned_cols=184 Identities=13% Similarity=0.214 Sum_probs=136.0
Q ss_pred CeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe----cCCceeEEEEe------c--------------CceEEE---e
Q 015650 140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS----FRSEVRSVKLR------R--------------DRIIVV---L 192 (403)
Q Consensus 140 ~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~----~~~~i~~~~~~------~--------------~~~~~~---~ 192 (403)
...+++....| |.++||+..+++....|. ..+...+..|. | |...++ .
T Consensus 4 ~~~~~A~~~~~-----g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~ 78 (541)
T KOG4547|consen 4 ALDYFALSTGD-----GRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP 78 (541)
T ss_pred hhheEeecCCC-----CeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence 34556666666 999999999998888776 23444444443 1 112233 3
Q ss_pred cCeEEEEEcCCceeeeEee--ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEeecCCceEEEEEcCC
Q 015650 193 EQKIFVYNFADLKLLHQIE--TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQD 269 (403)
Q Consensus 193 d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~ 269 (403)
.|.|.+|+...++....+. .|.+.+.++.++.+-.- +- +++.|+.+..|+...... ..+......+.+++.+||
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~c--iy-S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D 155 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGC--IY-SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD 155 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCc--eE-ecCCceeEEEEecccceeeeeeccCCCccceEEEcCC
Confidence 7899999999998888776 35566666655554432 22 334799999999988665 445667778999999999
Q ss_pred CCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCC-----CCEEEEE-eCCCcEEEEEeecCC
Q 015650 270 GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-----AQWLAVS-SDKGTVHVFNLKVNS 336 (403)
Q Consensus 270 g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d-----~~~l~s~-~~dg~v~iwd~~~~~ 336 (403)
|+.|++++. . |++||+++++.+.+|.+ |.++|.++.|.-+ |.+++++ ..+..+.+|-++...
T Consensus 156 ~~~l~~as~--~-ik~~~~~~kevv~~ftg--h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 156 GKILLTASR--Q-IKVLDIETKEVVITFTG--HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred CCEEEeccc--e-EEEEEccCceEEEEecC--CCcceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence 999998875 4 99999999999999997 7799999999877 6776654 466678899887633
No 261
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=2.4e-09 Score=94.83 Aligned_cols=234 Identities=12% Similarity=0.162 Sum_probs=151.2
Q ss_pred CCeEEEEEcCCCCEEEEEc-----------C-CcEEEEEcCCCeeEEEEeccc--CcceeEEEEeeeCCeEEEeeCCCCC
Q 015650 86 PTLLHISFNQDHGCFAAGT-----------D-HGFRIYNCDPFREIFRRDFER--GGGIGVVEMLFRCNILALVGGGPDP 151 (403)
Q Consensus 86 ~~i~~i~~s~d~~~l~~~~-----------~-~~i~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~s~~~d~ 151 (403)
..|.-+.|||..+||++=+ + +.++|||+.++... +.+.. .....-.-+.|+.|..+++.-..
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk--rsF~~~~~~~~~WP~frWS~DdKy~Arm~~-- 325 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK--RSFPVIKSPYLKWPIFRWSHDDKYFARMTG-- 325 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh--cceeccCCCccccceEEeccCCceeEEecc--
Confidence 4588999999999999843 1 22999999988765 44431 22222233456777777776655
Q ss_pred CCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEEe-----c---CeEEEEEcCCceeeeEeeccCCCceeEEE
Q 015650 152 QYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL-----E---QKIFVYNFADLKLLHQIETIANPKGLCAV 222 (403)
Q Consensus 152 ~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~-----d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 222 (403)
..|.||+.....++..-. ....|....|+|.+.+++. + .++.+..+.+++.+++...+. +..+.+
T Consensus 326 ----~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckL 399 (698)
T KOG2314|consen 326 ----NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKL 399 (698)
T ss_pred ----ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee--eeccEE
Confidence 489999876644433322 4678999999999999882 2 367788888777776654332 333444
Q ss_pred eeCCCeEEEEee---------CCccCeEEEEEccCCceeE-EeecCCceEEEEEcCCCCEEEEEeC---CCcEEEEEEcC
Q 015650 223 SQGVGSLVLVCP---------GLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTL 289 (403)
Q Consensus 223 ~~~~~~~~~~~~---------g~~d~~i~v~d~~~~~~~~-~~~~~~~i~~~~~sp~g~~l~s~~~---dg~~i~iwd~~ 289 (403)
++..++-+++.- ++.-..+.|+.++.+.+-. ...-...|...+|-|.|..+++-+. ..+ +.+|.++
T Consensus 400 hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~t-vsfY~~e 478 (698)
T KOG2314|consen 400 HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNT-VSFYAVE 478 (698)
T ss_pred EeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccc-eeEEEee
Confidence 443333233320 1112245566666654322 2334667889999999998876443 235 8999887
Q ss_pred C-C---cEEEEEecCCCcccEEEEEeCCCCCEEEEEe---CCCcEEEEEeec
Q 015650 290 D-G---TLLQEVRRGADRAEIYSLAFSSNAQWLAVSS---DKGTVHVFNLKV 334 (403)
Q Consensus 290 ~-~---~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~---~dg~v~iwd~~~ 334 (403)
+ . +++..+. ....+.+.|+|.|++++.+. ..|.+.++|.+.
T Consensus 479 ~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 479 TNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred cCCCchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 3 2 2333443 24578899999999988764 578899999885
No 262
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.28 E-value=3.9e-09 Score=91.88 Aligned_cols=144 Identities=11% Similarity=0.163 Sum_probs=113.6
Q ss_pred CceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccC-eEEEEEccCCceeEEeecCCceE
Q 015650 186 DRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG-QVRVEHYASKRTKFIMAHDSRIA 262 (403)
Q Consensus 186 ~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~-~i~v~d~~~~~~~~~~~~~~~i~ 262 (403)
+|.+++ +.|+..+.+...+-.++. ++...+....+..+++..++.+ .|| .+-++|.++++.+.+...-+.|.
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt---~dgD~l~iyd~~~~e~kr~e~~lg~I~ 405 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGT---NDGDKLGIYDKDGGEVKRIEKDLGNIE 405 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEec---cCCceEEEEecCCceEEEeeCCccceE
Confidence 344444 788988888766554443 4456677777877877655554 677 89999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC----cEEEEEeecCCC
Q 015650 263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG----TVHVFNLKVNSG 337 (403)
Q Consensus 263 ~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg----~v~iwd~~~~~~ 337 (403)
++..+++|++++.+..... |.+.|+.+++....-+ ...+-|+.+.|+|++++||-+--+| .|+++|+..++.
T Consensus 406 av~vs~dGK~~vvaNdr~e-l~vididngnv~~idk--S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 406 AVKVSPDGKKVVVANDRFE-LWVIDIDNGNVRLIDK--SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EEEEcCCCcEEEEEcCceE-EEEEEecCCCeeEecc--cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 9999999999998888777 9999999998753332 2457899999999999999775444 689999999874
No 263
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=1.1e-11 Score=108.99 Aligned_cols=158 Identities=13% Similarity=0.197 Sum_probs=124.6
Q ss_pred EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe--cCCceeEEEEecC--ceEEE---ecC
Q 015650 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRD--RIIVV---LEQ 194 (403)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~--~~~~~---~d~ 194 (403)
..+. +|...|.++.|+.+|.+|++|++| -.+.|||.-..+++..+. |...|.++.|-|. .++++ .|.
T Consensus 44 ~eL~-GH~GCVN~LeWn~dG~lL~SGSDD-----~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 44 AELT-GHTGCVNCLEWNADGELLASGSDD-----TRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hhhc-cccceecceeecCCCCEEeecCCc-----ceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 4565 899999999999999999999999 999999999889988887 9999999999983 44555 589
Q ss_pred eEEEEEcCCc----------eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce--e---------E
Q 015650 195 KIFVYNFADL----------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT--K---------F 253 (403)
Q Consensus 195 ~i~i~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~--~---------~ 253 (403)
.|+++|+... +....+..|...+.-++..|++.+.+..+ ++||+|+-+|++.... . .
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsa--sEDGtirQyDiREph~c~p~~~~~~~l~n 195 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSA--SEDGTIRQYDIREPHVCNPDEDCPSILVN 195 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEe--cCCcceeeecccCCccCCccccccHHHHH
Confidence 9999999841 23344556777888889999887666554 5999999999987221 1 1
Q ss_pred EeecCCceEEEEEcCC-CCEEEEEeCCCcEEEEEEc
Q 015650 254 IMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNT 288 (403)
Q Consensus 254 ~~~~~~~i~~~~~sp~-g~~l~s~~~dg~~i~iwd~ 288 (403)
+...--...|+.++|. ..+|+.|+.|-. .++||.
T Consensus 196 y~~~lielk~ltisp~rp~~laVGgsdpf-arLYD~ 230 (758)
T KOG1310|consen 196 YNPQLIELKCLTISPSRPYYLAVGGSDPF-ARLYDR 230 (758)
T ss_pred hchhhheeeeeeecCCCCceEEecCCCch-hhhhhh
Confidence 1112235678999994 567889999998 999995
No 264
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.27 E-value=5.5e-10 Score=93.10 Aligned_cols=200 Identities=13% Similarity=0.193 Sum_probs=138.6
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCC--CeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (403)
.+...-..+++++.+.++.+.|++|-+++ +.-+.+.. ++....+... .|...+..+.|+-....+++.+.|
T Consensus 62 sI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~e~V~s~~~d----- 135 (404)
T KOG1409|consen 62 SIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTHEWVLSTGKD----- 135 (404)
T ss_pred hhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhh-hhhcceeeEEecCCceeEEEeccc-----
Confidence 44555667899999999999999999777 77666531 1222223333 688899999999888899999987
Q ss_pred ceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-ecCeEEEEEc--CCceeeeEeeccCCCceeEEEeeCCCeEEEE
Q 015650 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNF--ADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (403)
..+.---.+.+..+..+.......++.+.-.-.++. ..|.|.+..+ ..-..+..+.+|.+.+.+++|.+.... +
T Consensus 136 k~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~--L- 212 (404)
T KOG1409|consen 136 KQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRL--L- 212 (404)
T ss_pred cceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcE--E-
Confidence 555444445555555444333333333322211111 2344444333 345677888889998888888876653 2
Q ss_pred eeCCccCeEEEEEccCC--ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEc
Q 015650 233 CPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (403)
Q Consensus 233 ~~g~~d~~i~v~d~~~~--~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~ 288 (403)
.+|..|..+.+||+... ....+.+|...|..+...+.-+.|.+++.||. |.+||+
T Consensus 213 fSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~-i~~w~m 269 (404)
T KOG1409|consen 213 FSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG-IVVWNM 269 (404)
T ss_pred EeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe-EEEEec
Confidence 24678999999998774 45667889999999999888899999999999 999997
No 265
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=7e-09 Score=94.66 Aligned_cols=193 Identities=11% Similarity=0.058 Sum_probs=127.9
Q ss_pred eEEEEeeeCCeEE-Ee-e-CC-CCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE--e----cCeEEEEE
Q 015650 131 GVVEMLFRCNILA-LV-G-GG-PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L----EQKIFVYN 200 (403)
Q Consensus 131 ~v~~~~~~~~~~~-~~-s-~~-~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~----d~~i~i~d 200 (403)
......|+|++.. ++ + -. .. ..|+++|+.+++........+......|+|||..++ . +..|+++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~-----~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERK-----PTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCC-----CEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence 6678889998752 33 2 22 23 579999998887665555666677788999997666 2 35799999
Q ss_pred cCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCC
Q 015650 201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG 280 (403)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg 280 (403)
+.+++.. .+...........|+||++.+++.+.......|.++|+.++....+...... ...|+|||++|+..+...
T Consensus 264 l~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 264 TNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCC
Confidence 8877643 3433333334568999999988876332334788888888777555432222 248999999998766532
Q ss_pred --------cEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC-Cc--EEEEEeecC
Q 015650 281 --------TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-GT--VHVFNLKVN 335 (403)
Q Consensus 281 --------~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d-g~--v~iwd~~~~ 335 (403)
..|.+.|+.+++.. .+... .......|+|||+.|+....+ +. |.+.+++..
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~~-~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYIR-RLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CcccCCCCcEEEEEECCCCCeE-ECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 23888898888654 34322 223358899999988766532 33 555566443
No 266
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.25 E-value=1.2e-09 Score=105.16 Aligned_cols=214 Identities=12% Similarity=0.106 Sum_probs=147.2
Q ss_pred EEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCceEEEEECCCC-------ceeEEEe-cCCceeEEEEecCceE
Q 015650 119 IFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDRII 189 (403)
Q Consensus 119 ~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~i~iwd~~~~-------~~~~~~~-~~~~i~~~~~~~~~~~ 189 (403)
.+...+. .|...+..++.++. +.++++++.| |+|++|+...- +...++. -...+..+...+.+..
T Consensus 1039 ~lVAhL~-Ehs~~v~k~a~s~~~~s~FvsgS~D-----GtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1039 ILVAHLH-EHSSAVIKLAVSSEHTSLFVSGSDD-----GTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred eEeehhh-hccccccceeecCCCCceEEEecCC-----ceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 4445665 57777777777665 4899999999 99999997542 2233344 4678888888888777
Q ss_pred EE---ecCeEEEEEcCC--ce-----eeeEeeccCC--CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce---eEE
Q 015650 190 VV---LEQKIFVYNFAD--LK-----LLHQIETIAN--PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT---KFI 254 (403)
Q Consensus 190 ~~---~d~~i~i~d~~~--~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~---~~~ 254 (403)
++ .||.|.+.++.. .+ +.+....+.. .+..-++........+++ +...+.|..||++.... ...
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy-~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVY-ATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEE-EEeccceEEecchhhhhHHhhhc
Confidence 77 499999999875 11 1111111221 222333333333322332 34778999999988442 223
Q ss_pred eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCC---CEEEEEe--CCCcEEE
Q 015650 255 MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA---QWLAVSS--DKGTVHV 329 (403)
Q Consensus 255 ~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~---~~l~s~~--~dg~v~i 329 (403)
....+.|++++.+|.+.++++|+..|. +-+||++=+.++..+.-+ +..+|+.+..+|-. ...++++ ..+.|-+
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~-l~lWDLRF~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQ-LVLWDLRFRVPILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCce-EEEEEeecCceeecccCc-ccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 445678999999999999999999999 999999999998888754 44788888777643 3555444 5778999
Q ss_pred EEeecCCCCCCC
Q 015650 330 FNLKVNSGSARS 341 (403)
Q Consensus 330 wd~~~~~~~~~~ 341 (403)
|++.++.....+
T Consensus 1270 wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1270 WNMETGLRQTVL 1281 (1431)
T ss_pred eecccCcceEEE
Confidence 999998654333
No 267
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=2.2e-09 Score=95.43 Aligned_cols=177 Identities=10% Similarity=0.205 Sum_probs=138.9
Q ss_pred ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCC-----------CceeE
Q 015650 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIAN-----------PKGLC 220 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~-----------~~~~~ 220 (403)
..|+-++++.|+.+..+. ....++++..++...+++ .+|.|-.||.++...+..+..... .++.+
T Consensus 155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal 234 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTAL 234 (703)
T ss_pred cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEE
Confidence 469999999999999998 568999999999877777 389999999998766665543221 14445
Q ss_pred EEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecC--CceEEEEEcCC--CCEEEEEeCCCcEEEEEEcCCCcEEEE
Q 015650 221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD--SRIACFALTQD--GQLLATSSTKGTLVRIFNTLDGTLLQE 296 (403)
Q Consensus 221 ~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~--~~i~~~~~sp~--g~~l~s~~~dg~~i~iwd~~~~~~~~~ 296 (403)
.|+ ++++.+++ |...|.+.|||++.........|. -+|..+.|.+. +..+++. .... ++|||-.+|+....
T Consensus 235 ~F~--d~gL~~aV-Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~-~kiWd~~~Gk~~as 309 (703)
T KOG2321|consen 235 KFR--DDGLHVAV-GTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRI-LKIWDECTGKPMAS 309 (703)
T ss_pred Eec--CCceeEEe-eccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHH-hhhcccccCCceee
Confidence 554 44666666 668999999999998887777775 46888889775 4455543 3345 99999999999988
Q ss_pred EecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCC
Q 015650 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR 340 (403)
Q Consensus 297 ~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~ 340 (403)
+.. ...++.+++-|++.+++++-+++.+..|=+..-.+.++
T Consensus 310 iEp---t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPr 350 (703)
T KOG2321|consen 310 IEP---TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPR 350 (703)
T ss_pred ccc---cCCcCceeeecCCceEEEecCCCcceeEEccccCCCch
Confidence 873 45699999999999999999999999998888776554
No 268
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.19 E-value=7e-08 Score=96.03 Aligned_cols=301 Identities=12% Similarity=0.168 Sum_probs=177.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEE----EcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650 83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIY----NCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (403)
Q Consensus 83 ~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (403)
...+.|.++.|-++...++.+..+| |.+. +........... -..+|.+++|+||...++-...+ ++
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~----vd~GI~a~~WSPD~Ella~vT~~-----~~ 143 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS----VDSGILAASWSPDEELLALVTGE-----GN 143 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE----EcCcEEEEEECCCcCEEEEEeCC-----CE
Confidence 3457899999999998888888666 7777 444443333333 44789999999987665555444 66
Q ss_pred EEEEEC---------------CC--------CceeEEEe-------------------------cCCceeEEEEecCceE
Q 015650 158 VMIWDD---------------HQ--------SRCIGELS-------------------------FRSEVRSVKLRRDRII 189 (403)
Q Consensus 158 i~iwd~---------------~~--------~~~~~~~~-------------------------~~~~i~~~~~~~~~~~ 189 (403)
+.+.+- .. |+.-..|. ....-..++|-.||.+
T Consensus 144 l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y 223 (928)
T PF04762_consen 144 LLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY 223 (928)
T ss_pred EEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE
Confidence 666531 00 11101110 1223456889999999
Q ss_pred EEe-------c--CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC--CccCeEEEEEccCCceeEEe---
Q 015650 190 VVL-------E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG--LQKGQVRVEHYASKRTKFIM--- 255 (403)
Q Consensus 190 ~~~-------d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~d~~i~v~d~~~~~~~~~~--- 255 (403)
++. + ..+++|+- .|++..+-+...+--..++|.|.|+ ++|++- .....|.+|.-++-+...+.
T Consensus 224 FAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~--lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~ 300 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGN--LIASSQRLPDRHDVVFFERNGLRHGEFTLRF 300 (928)
T ss_pred EEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCC--EEEEEEEcCCCcEEEEEecCCcEeeeEecCC
Confidence 881 2 47999995 4765554443344445788888887 444422 13356777776654333332
Q ss_pred -ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE--EEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCcEEEEE
Q 015650 256 -AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--LQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFN 331 (403)
Q Consensus 256 -~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~s~d~-~~l~s~~~dg~v~iwd 331 (403)
.....|..+.|++|+..||....|. |.+|-..+..- .+++.-. ....+..+.|+|.. ..|...+.+|.+..++
T Consensus 301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~--vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 301 DPEEEKVIELAWNSDSEILAVWLEDR--VQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred CCCCceeeEEEECCCCCEEEEEecCC--ceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 3456799999999999999977655 99998877642 2233321 22345569999954 4577777767776655
Q ss_pred eecCCCCCCCCCCCCCCCCCccccccc-c----cccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 332 LKVNSGSARSEPRSTSDPTLPTSSLSF-I----KGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
+.-.............-.+.-..+... + ...+| ..-+..++.+ ...+..++|++++..+++...||+
T Consensus 378 ~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VP----PPMs~~~l~~-~~~v~~vaf~~~~~~~avl~~d~~ 449 (928)
T PF04762_consen 378 FAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVP----PPMSSYELEL-PSPVNDVAFSPSNSRFAVLTSDGS 449 (928)
T ss_pred EEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCC----chHhceEEcC-CCCcEEEEEeCCCCeEEEEECCCC
Confidence 543221100000000000001111111 1 11222 1222233444 358999999999988998888874
No 269
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=6.7e-10 Score=96.68 Aligned_cols=205 Identities=16% Similarity=0.146 Sum_probs=153.1
Q ss_pred EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe--cCCceeEEEEecC---ceEEE--ecC
Q 015650 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRD---RIIVV--LEQ 194 (403)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~---~~~~~--~d~ 194 (403)
..|. .|...+..+.|+..+..+++++.| ..|.+||...++....+. |...|....|-|. ..++. .||
T Consensus 136 ~kL~-~H~GcVntV~FN~~Gd~l~SgSDD-----~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 136 KKLN-KHKGCVNTVHFNQRGDVLASGSDD-----LQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred hccc-CCCCccceeeecccCceeeccCcc-----ceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccC
Confidence 3454 789999999999999999999999 999999999999888887 7788887778773 33333 589
Q ss_pred eEEEEEcCC-cee--eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCcee----EEeecCC---ceEEE
Q 015650 195 KIFVYNFAD-LKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK----FIMAHDS---RIACF 264 (403)
Q Consensus 195 ~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~----~~~~~~~---~i~~~ 264 (403)
.+++=.+.. +.+ ...+..|.+++..+++-|+....++.+ +.|+.+.-+|++..... ....+.. ....+
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~--geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I 287 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSC--GEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI 287 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCCCccccc--ccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence 988877643 322 344567889999999999988777665 47999999999874322 2223333 56788
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEEEcCCCcE------EEEEecC----CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650 265 ALTQDGQ-LLATSSTKGTLVRIFNTLDGTL------LQEVRRG----ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (403)
Q Consensus 265 ~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~------~~~~~~~----~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~ 333 (403)
+..|... .+++++.|.. +++||.+.-.. +..+..+ .....|++++|+.++.-|++...|-.|++|.-.
T Consensus 288 a~~P~nt~~faVgG~dqf-~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~ 366 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQF-ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKS 366 (559)
T ss_pred ecCCCCccccccCChhhh-hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccc
Confidence 9999655 7899999999 99999865321 2222221 133579999999888888888889899999443
Q ss_pred cC
Q 015650 334 VN 335 (403)
Q Consensus 334 ~~ 335 (403)
-+
T Consensus 367 ~~ 368 (559)
T KOG1334|consen 367 MG 368 (559)
T ss_pred cc
Confidence 33
No 270
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.16 E-value=9.4e-10 Score=93.66 Aligned_cols=161 Identities=14% Similarity=0.144 Sum_probs=112.8
Q ss_pred eEEEEecCceEEE---ecCeEEEEEcCCc----eeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce
Q 015650 179 RSVKLRRDRIIVV---LEQKIFVYNFADL----KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT 251 (403)
Q Consensus 179 ~~~~~~~~~~~~~---~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~ 251 (403)
..+..++.+++++ .+....+++.... +.+........+ ..+.+..+.....++-..++...+.+|....++.
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~-~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRP-TAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCc-ceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 3445556666666 2334444444332 222222222222 3444444444444443223556666776666777
Q ss_pred eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (403)
Q Consensus 252 ~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd 331 (403)
..+.+|-..++.++|+||+++|+++..|+. |+|-.......+..+..+ |..-|..++.-+ ++.|+++|.|++|++||
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~f~IesfclG-H~eFVS~isl~~-~~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPATFVIESFCLG-HKEFVSTISLTD-NYLLLSGSGDKTLRLWD 221 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcccchhhhccc-cHhheeeeeecc-CceeeecCCCCcEEEEe
Confidence 888899999999999999999999999999 999888877777777765 888999999975 46689999999999999
Q ss_pred eecCCCCCCCCC
Q 015650 332 LKVNSGSARSEP 343 (403)
Q Consensus 332 ~~~~~~~~~~~~ 343 (403)
+.+++...+.+.
T Consensus 222 ~~sgk~L~t~dl 233 (390)
T KOG3914|consen 222 ITSGKLLDTCDL 233 (390)
T ss_pred cccCCcccccch
Confidence 999998877663
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.16 E-value=1.8e-08 Score=87.77 Aligned_cols=147 Identities=12% Similarity=-0.010 Sum_probs=112.9
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCCc--EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCc
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (403)
.+..+|...|....+.-++.-++.|..++ +-||+.++++.. .+. ..-..|.++..++++..++.+... .
T Consensus 353 ~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k---r~e-~~lg~I~av~vs~dGK~~vvaNdr-----~ 423 (668)
T COG4946 353 SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK---RIE-KDLGNIEAVKVSPDGKKVVVANDR-----F 423 (668)
T ss_pred eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE---Eee-CCccceEEEEEcCCCcEEEEEcCc-----e
Confidence 55677888899999988888888888444 999999877633 232 456789999999999988888776 8
Q ss_pred eEEEEECCCCceeEEEe-cCCceeEEEEecCceEEEe-------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL-------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (403)
Q Consensus 157 ~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (403)
.|.+.|+.+|.....=+ ..+-|..+.|+|++++++. -..|++||+..++.... ......-..-+|.|+++.
T Consensus 424 el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v-TT~ta~DfsPaFD~d~ry 502 (668)
T COG4946 424 ELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV-TTPTAYDFSPAFDPDGRY 502 (668)
T ss_pred EEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe-cCCcccccCcccCCCCcE
Confidence 99999999987644333 5677999999999999992 45799999988765543 333344466788899998
Q ss_pred EEEEeeC
Q 015650 229 LVLVCPG 235 (403)
Q Consensus 229 ~~~~~~g 235 (403)
+++.+.-
T Consensus 503 LYfLs~R 509 (668)
T COG4946 503 LYFLSAR 509 (668)
T ss_pred EEEEecc
Confidence 8887643
No 272
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.16 E-value=4e-08 Score=86.44 Aligned_cols=237 Identities=9% Similarity=0.111 Sum_probs=157.9
Q ss_pred EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCe--EEEeeCCCCCCCCCceEEEEECCCCc
Q 015650 90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI--LALVGGGPDPQYPLNKVMIWDDHQSR 167 (403)
Q Consensus 90 ~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~s~~~d~~~~~~~i~iwd~~~~~ 167 (403)
-+.|+.+.+++|---.+.+.|+++ +.... ...+..-....+..+.++|.+ ..++.-.-...-.++.+++|.+..+.
T Consensus 136 ~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~-~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s 213 (561)
T COG5354 136 VLKFSIDDKYVARVVGSSLYIHEI-TDNIE-EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS 213 (561)
T ss_pred eeeeeecchhhhhhccCeEEEEec-CCccc-cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC
Confidence 567888887777655566888886 22211 122221234567777777752 12222111111123889999998777
Q ss_pred eeEEEe-cCCceeEEEEecCceEEEe--------------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEE
Q 015650 168 CIGELS-FRSEVRSVKLRRDRIIVVL--------------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (403)
Q Consensus 168 ~~~~~~-~~~~i~~~~~~~~~~~~~~--------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (403)
.+.+.. ..-.=..+.|++.|.+++. ...+++++++.. -+.......++|...+|.|.++++.++
T Consensus 214 ~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~F~vi 292 (561)
T COG5354 214 VLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSRFAVI 292 (561)
T ss_pred eeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeeecccCCceeEE
Confidence 666655 4444456888888877661 357889998743 333332457889999999999987666
Q ss_pred eeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCC---CcEEEEEEcCCCcEEE-EEecCCCcccEEE
Q 015650 233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQ-EVRRGADRAEIYS 308 (403)
Q Consensus 233 ~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d---g~~i~iwd~~~~~~~~-~~~~~~~~~~v~~ 308 (403)
+ |-..-.+.++|++......+ ....=..+.|+|.+++++.++-| |. |-+||........ .+.+ ....-
T Consensus 293 ~-g~~pa~~s~~~lr~Nl~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gn-i~i~~~~~rf~~~~~~~~----~n~s~ 364 (561)
T COG5354 293 S-GYMPASVSVFDLRGNLRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGN-IEIFDPAGRFKVAGAFNG----LNTSY 364 (561)
T ss_pred e-cccccceeecccccceEEec--CCcccccccccCcccEEEEecCCccccc-eEEeccCCceEEEEEeec----CCceE
Confidence 4 77889999999998833332 33344567899999999987765 56 9999987655444 5553 34566
Q ss_pred EEeCCCCCEEEEEe------CCCcEEEEEeecCCC
Q 015650 309 LAFSSNAQWLAVSS------DKGTVHVFNLKVNSG 337 (403)
Q Consensus 309 l~~s~d~~~l~s~~------~dg~v~iwd~~~~~~ 337 (403)
+.|+||++++.+.. .|..++|||+...+.
T Consensus 365 ~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 365 CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred eeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 78999999887664 478899999987663
No 273
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.14 E-value=2e-09 Score=102.07 Aligned_cols=176 Identities=13% Similarity=0.149 Sum_probs=137.9
Q ss_pred ceEEEEECCCCceeEEEecCCce-----eEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650 156 NKVMIWDDHQSRCIGELSFRSEV-----RSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~~~~~i-----~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (403)
+.+.+||...+.....+.+.+.. .-+.++++..+++ .-+.|.+|+....+.-..+.+|.+.+..+.++.++.
T Consensus 109 ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~ 188 (967)
T KOG0974|consen 109 NSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGR 188 (967)
T ss_pred ceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCc
Confidence 78999998888777777644432 2234456666666 468899999874333335779999999999998988
Q ss_pred eEEEEeeCCccCeEEEEEccCCcee--EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCccc
Q 015650 228 SLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE 305 (403)
Q Consensus 228 ~~~~~~~g~~d~~i~v~d~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~ 305 (403)
.++.+ ++|..+++|++++.+.. ...+|...+..++|.|. ++++++.|.+ .++|+. +++.+..+..| ....
T Consensus 189 ~i~s~---SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct-crvW~~-~~~~l~~y~~h-~g~~ 260 (967)
T KOG0974|consen 189 YIASV---SDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT-CRVWGV-NGTQLEVYDEH-SGKG 260 (967)
T ss_pred EEEEE---ecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE-EEEEec-ccceehhhhhh-hhcc
Confidence 55444 48999999999996643 46689999999999998 8999999999 999975 56666677764 3467
Q ss_pred EEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCC
Q 015650 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (403)
Q Consensus 306 v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~ 339 (403)
|+.++..++...+++++.|+.+++|++.....+.
T Consensus 261 iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~ 294 (967)
T KOG0974|consen 261 IWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEG 294 (967)
T ss_pred eeEEEEcCCceEEEeeccCcchhhhhhhcccccc
Confidence 9999999999999999999999999998776543
No 274
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.14 E-value=1.4e-07 Score=86.07 Aligned_cols=219 Identities=18% Similarity=0.145 Sum_probs=130.6
Q ss_pred CCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEec
Q 015650 96 DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF 174 (403)
Q Consensus 96 d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~ 174 (403)
++..+++++ ++.+..+|.++++......+. .. ........ ++..++.. .+ +.|+.||.++|+.+..+..
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~-~~~~p~v~-~~~v~v~~-~~-----g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS--SE-VLSPPLVA-NGLVVVRT-ND-----GRLTALDAATGERLWTYSR 173 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC--ce-eecCCEEE-CCEEEEEC-CC-----CeEEEEEcCCCceeeEEcc
Confidence 345555555 555999999888877655543 11 11111222 33344433 34 8999999999998887763
Q ss_pred CCcee------EEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCC----------c-eeEEEeeCCCeEEEEeeC
Q 015650 175 RSEVR------SVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANP----------K-GLCAVSQGVGSLVLVCPG 235 (403)
Q Consensus 175 ~~~i~------~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~g 235 (403)
..... ..... ++.+++ .++.+..+|+++|+.+......... + ....+ .++.+++.
T Consensus 174 ~~~~~~~~~~~sp~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~--- 247 (377)
T TIGR03300 174 VTPALTLRGSASPVIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAV--- 247 (377)
T ss_pred CCCceeecCCCCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEE---
Confidence 32221 11222 344444 4689999999999877654321100 0 01111 23444443
Q ss_pred CccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCC
Q 015650 236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA 315 (403)
Q Consensus 236 ~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~ 315 (403)
..++.++.||..+++..-...... ..... .++..++.++.+|. |..+|..+++.+-..... ......+... .+
T Consensus 248 ~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~--~~~~~vyv~~~~G~-l~~~d~~tG~~~W~~~~~-~~~~~ssp~i--~g 320 (377)
T TIGR03300 248 SYQGRVAALDLRSGRVLWKRDASS-YQGPA--VDDNRLYVTDADGV-VVALDRRSGSELWKNDEL-KYRQLTAPAV--VG 320 (377)
T ss_pred EcCCEEEEEECCCCcEEEeeccCC-ccCce--EeCCEEEEECCCCe-EEEEECCCCcEEEccccc-cCCccccCEE--EC
Confidence 367899999998876543222211 12222 25667888888999 999999999877555321 1112222222 46
Q ss_pred CEEEEEeCCCcEEEEEeecCCC
Q 015650 316 QWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 316 ~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
..|++++.+|.|+++|.++++.
T Consensus 321 ~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred CEEEEEeCCCEEEEEECCCCCE
Confidence 7888999999999999998873
No 275
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.13 E-value=1.2e-07 Score=80.26 Aligned_cols=239 Identities=18% Similarity=0.174 Sum_probs=154.4
Q ss_pred CCeEEEEEcC-CCCEEEEEcCCc--EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEE
Q 015650 86 PTLLHISFNQ-DHGCFAAGTDHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (403)
Q Consensus 86 ~~i~~i~~s~-d~~~l~~~~~~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd 162 (403)
.....++.+| .+..++.+-.-+ ..+||..+++......-. ...--.-.-.|++++.+|++...|..-..|.|-|||
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~-~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP-PGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC-CCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 3456788899 456667776444 889999887766332221 111122245689999999988877555569999999
Q ss_pred CC-CCceeEEEe-cCCceeEEEEecCceEEE-e--------------------cCeEEEEEcCCceeeeEeec----cCC
Q 015650 163 DH-QSRCIGELS-FRSEVRSVKLRRDRIIVV-L--------------------EQKIFVYNFADLKLLHQIET----IAN 215 (403)
Q Consensus 163 ~~-~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~--------------------d~~i~i~d~~~~~~~~~~~~----~~~ 215 (403)
.. +.+.+.++. +.-....+.+.||+..|+ . +-.+...|..+|+.+.+... +..
T Consensus 84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l 163 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL 163 (305)
T ss_pred CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence 98 567778887 666777889999994444 2 22466677788887776432 556
Q ss_pred CceeEEEeeCCCeEEEEee--CC---ccCeEEEEEccCCceeEE-------eecCCceEEEEEcCCCCEEEEEeCCCcEE
Q 015650 216 PKGLCAVSQGVGSLVLVCP--GL---QKGQVRVEHYASKRTKFI-------MAHDSRIACFALTQDGQLLATSSTKGTLV 283 (403)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~--g~---~d~~i~v~d~~~~~~~~~-------~~~~~~i~~~~~sp~g~~l~s~~~dg~~i 283 (403)
.+..+++..++.- +++.- |. .--.|-+++.... ...+ ..-.+.+-+|++++++.++++.|-.|.++
T Consensus 164 SiRHLa~~~~G~V-~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 164 SIRHLAVDGDGTV-AFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred ceeeEEecCCCcE-EEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 6778888877642 22210 10 0112333332221 2222 23357899999999999998877776669
Q ss_pred EEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650 284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (403)
Q Consensus 284 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~ 335 (403)
.+||..+++.+..... ..+..++-.+++ ++++. ..|. ++.+...
T Consensus 242 ~~~d~~tg~~~~~~~l----~D~cGva~~~~~-f~~ss-G~G~--~~~~~~~ 285 (305)
T PF07433_consen 242 AVWDAATGRLLGSVPL----PDACGVAPTDDG-FLVSS-GQGQ--LIRLSPD 285 (305)
T ss_pred EEEECCCCCEeecccc----CceeeeeecCCc-eEEeC-CCcc--EEEccCc
Confidence 9999999999877763 357778877776 45444 3454 3444433
No 276
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.12 E-value=1.2e-06 Score=74.65 Aligned_cols=212 Identities=15% Similarity=0.101 Sum_probs=140.7
Q ss_pred EEEEcC-CCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeee-CCeEEEeeCCCCCCCCCceEEEEECCCC
Q 015650 90 HISFNQ-DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFR-CNILALVGGGPDPQYPLNKVMIWDDHQS 166 (403)
Q Consensus 90 ~i~~s~-d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~~~~~~i~iwd~~~~ 166 (403)
++.|.+ ++.++++...++ |..|+..+..... ..+. . ...+.+. +++.++++.. +.+.++|..++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~--~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP--G---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTG 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS--S---EEEEEEECTTSEEEEEET-------TCEEEEETTTT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC--C---CceEEEEccCCEEEEEEc-------CceEEEecCCC
Confidence 568888 666666665444 8889887765442 2332 2 5666666 6777777765 45677798888
Q ss_pred ceeEEEec------CCceeEEEEecCceEEEec-----------CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650 167 RCIGELSF------RSEVRSVKLRRDRIIVVLE-----------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (403)
Q Consensus 167 ~~~~~~~~------~~~i~~~~~~~~~~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (403)
+....+.. ....+.+++.++|.+.+.+ +.|+.++.. ++..... ........++|+++++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEE
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchhe
Confidence 65444432 2457889999999877731 568888876 5543333 334445789999999987
Q ss_pred EEEeeCCccCeEEEEEccCCc--e---eEE-eecC--CceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCC
Q 015650 230 VLVCPGLQKGQVRVEHYASKR--T---KFI-MAHD--SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA 301 (403)
Q Consensus 230 ~~~~~g~~d~~i~v~d~~~~~--~---~~~-~~~~--~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~ 301 (403)
|++- +..+.|..+++.... + ..+ .... +....++++.+|++.++....+. |.++|.. |+.+..+...
T Consensus 149 yv~d--s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i~~p- 223 (246)
T PF08450_consen 149 YVAD--SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREIELP- 223 (246)
T ss_dssp EEEE--TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEEE-S-
T ss_pred eecc--cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEEcCC-
Confidence 7765 456789999986422 1 222 2222 24788999999998877777777 9999975 9999988864
Q ss_pred CcccEEEEEe-CCCCCEEEEEe
Q 015650 302 DRAEIYSLAF-SSNAQWLAVSS 322 (403)
Q Consensus 302 ~~~~v~~l~~-s~d~~~l~s~~ 322 (403)
...+++++| .++.+.|+..+
T Consensus 224 -~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 224 -VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -SSSEEEEEEESTTSSEEEEEE
T ss_pred -CCCEEEEEEECCCCCEEEEEe
Confidence 248999999 47767665543
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.12 E-value=2.8e-07 Score=91.86 Aligned_cols=201 Identities=15% Similarity=0.144 Sum_probs=127.2
Q ss_pred cceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEE----ECCCCceeEEEecCCceeEEEEecCceEEE---ecCeEEEEE
Q 015650 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW----DDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYN 200 (403)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iw----d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d 200 (403)
....|.++.|-.+...++.+..+ |.|.+. +..+...-..=.....|.+++|+||+.+++ .++++.+.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~-----Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALAS-----GDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECC-----ceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 45689999987776544444444 888888 544433222222678999999999998888 356666653
Q ss_pred cCCce------------------------eeeEeeccCC----------------------CceeEEEeeCCCeEEEEee
Q 015650 201 FADLK------------------------LLHQIETIAN----------------------PKGLCAVSQGVGSLVLVCP 234 (403)
Q Consensus 201 ~~~~~------------------------~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 234 (403)
. +.+ .-.+|.+..+ .-..+.+++.|++.|+|++
T Consensus 149 ~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 149 R-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred c-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence 2 111 1111111000 0033556666666666663
Q ss_pred CC--c---cCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeC--CCcEEEEEEcCCCcEEEEEecC--CCccc
Q 015650 235 GL--Q---KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST--KGTLVRIFNTLDGTLLQEVRRG--ADRAE 305 (403)
Q Consensus 235 g~--~---d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~--dg~~i~iwd~~~~~~~~~~~~~--~~~~~ 305 (403)
.- . -..++||+-++.....-..-.+--.+++|-|.|++||+.-. +...|.+|. ++|-.-..|... .....
T Consensus 228 s~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~ 306 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEK 306 (928)
T ss_pred EEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCce
Confidence 32 2 36899999774333333333444567899999999988765 222288887 566655555542 24468
Q ss_pred EEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 306 v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
|..|.|++|+..||..-.|. |++|-..+..
T Consensus 307 v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 307 VIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred eeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 99999999999999987665 9999888765
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=2.5e-07 Score=93.83 Aligned_cols=193 Identities=9% Similarity=0.081 Sum_probs=123.6
Q ss_pred EEeeeC-CeEEEeeCCCCCCCCCceEEEEECCCCceeEEEec--C-------------CceeEEEEecCceE-EEe---c
Q 015650 134 EMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF--R-------------SEVRSVKLRRDRII-VVL---E 193 (403)
Q Consensus 134 ~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~--~-------------~~i~~~~~~~~~~~-~~~---d 193 (403)
.+++++ ++..+++.... +.|++||.. ++.+..+.. . .....+++.+++.. .+. +
T Consensus 572 gvavd~~~g~lyVaDs~n-----~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNH-----NRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645 (1057)
T ss_pred eEEEECCCCeEEEEECCC-----CeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence 455654 45555665555 899999964 554444331 1 13578899987653 332 4
Q ss_pred CeEEEEEcCCceeeeEeecc-----------------CCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEee
Q 015650 194 QKIFVYNFADLKLLHQIETI-----------------ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA 256 (403)
Q Consensus 194 ~~i~i~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~ 256 (403)
+.|+++|+.++. +.++.+. ...-..+++++++..++++. ..++.|++||..++.+..+.+
T Consensus 646 ~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad--~~~~~I~v~d~~~g~v~~~~G 722 (1057)
T PLN02919 646 HALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM--AGQHQIWEYNISDGVTRVFSG 722 (1057)
T ss_pred ceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE--CCCCeEEEEECCCCeEEEEec
Confidence 689999987654 3333211 01124578888777766664 457889999988766554332
Q ss_pred c---------------CCceEEEEEcCCCCEEEE-EeCCCcEEEEEEcCCCcEEEEEec-----------CC--------
Q 015650 257 H---------------DSRIACFALTQDGQLLAT-SSTKGTLVRIFNTLDGTLLQEVRR-----------GA-------- 301 (403)
Q Consensus 257 ~---------------~~~i~~~~~sp~g~~l~s-~~~dg~~i~iwd~~~~~~~~~~~~-----------~~-------- 301 (403)
. -.....|+++|+|++|+. -+.++. |++||+.++.......+ +.
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~-Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS-IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe-EEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 1 123457999999986554 445567 99999987654211100 00
Q ss_pred CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 302 ~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
.-....+++++++|.++++-+.++.|++||.+++.
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 00124689999999988888899999999998765
No 279
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.10 E-value=6.8e-09 Score=86.75 Aligned_cols=199 Identities=12% Similarity=0.150 Sum_probs=134.9
Q ss_pred CCCCCCeEEEEEcCCCC---EEEEEcCCcEEEEEcCCCeeE---------------------------------EEEecc
Q 015650 82 SSPPPTLLHISFNQDHG---CFAAGTDHGFRIYNCDPFREI---------------------------------FRRDFE 125 (403)
Q Consensus 82 ~~~~~~i~~i~~s~d~~---~l~~~~~~~i~iw~~~~~~~~---------------------------------~~~~~~ 125 (403)
..-...|+.+.|.+++. +|+++.|.+|++|.+...... ..+.+.
T Consensus 81 leieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~a 160 (433)
T KOG1354|consen 81 LEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYA 160 (433)
T ss_pred hhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecc
Confidence 34456899999988764 567777888999987422111 112333
Q ss_pred cCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCce---eEEEe------cCCceeEEEEecCce-EEE---e
Q 015650 126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC---IGELS------FRSEVRSVKLRRDRI-IVV---L 192 (403)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~---~~~~~------~~~~i~~~~~~~~~~-~~~---~ 192 (403)
..|..-|.++.++.|...+.++++ =.|.+|+++--.. +..++ ...-|++..|+|..- .++ +
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSADd------LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS 234 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSADD------LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS 234 (433)
T ss_pred ccceeEeeeeeecCccceEeeccc------eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC
Confidence 678888999999999999998876 5899999764321 22222 234588899999643 333 5
Q ss_pred cCeEEEEEcCCcee----eeEeec------------cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--CceeEE
Q 015650 193 EQKIFVYNFADLKL----LHQIET------------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFI 254 (403)
Q Consensus 193 d~~i~i~d~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~ 254 (403)
.|+|++.|++...+ .+.+.. -...|..+.|+.+|+ |+++ ..--+|++||+.. +.+.+.
T Consensus 235 KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGr--yils--RDyltvk~wD~nme~~pv~t~ 310 (433)
T KOG1354|consen 235 KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGR--YILS--RDYLTVKLWDLNMEAKPVETY 310 (433)
T ss_pred CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCc--EEEE--eccceeEEEeccccCCcceEE
Confidence 89999999985321 111111 123455688888877 4554 2447899999854 666666
Q ss_pred eecCC------------ce---EEEEEcCCCCEEEEEeCCCcEEEEEEcCCC
Q 015650 255 MAHDS------------RI---ACFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (403)
Q Consensus 255 ~~~~~------------~i---~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~ 291 (403)
+.|.. .| ..++|+-++.++++|+.... .++|++..|
T Consensus 311 ~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~-frvf~~~~g 361 (433)
T KOG1354|consen 311 PVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNV-FRVFNLARG 361 (433)
T ss_pred eehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccce-EEEecCCCC
Confidence 65532 12 35789999999999999998 999996544
No 280
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.10 E-value=1.2e-08 Score=85.37 Aligned_cols=250 Identities=11% Similarity=0.138 Sum_probs=167.8
Q ss_pred CCccccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC
Q 015650 76 PAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (403)
Q Consensus 76 ~~~~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~ 154 (403)
.......||.+.|+....-|-..-+.+.+ |..+|||--....+.. ..+......++.++.+..+...|+.+-+.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~w-psI~~~mP~~~~~~~y~~e~~~L~vg~~n---- 89 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYW-PSIYHYMPSPCSAMEYVSESRRLYVGQDN---- 89 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccC-chhhhhCCCCceEeeeeccceEEEEEEec----
Confidence 33456788999999887777666676666 5669999654333222 33332456788999999998888888877
Q ss_pred CceEEEEECCC----CceeEEEe-cCCceeEEEEecCceEEEe--cCeEEEEE-cCCceeeeEeeccCCCceeEEEeeCC
Q 015650 155 LNKVMIWDDHQ----SRCIGELS-FRSEVRSVKLRRDRIIVVL--EQKIFVYN-FADLKLLHQIETIANPKGLCAVSQGV 226 (403)
Q Consensus 155 ~~~i~iwd~~~----~~~~~~~~-~~~~i~~~~~~~~~~~~~~--d~~i~i~d-~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (403)
|++.-+.+.. ...++.+. |...+..+-|+....++++ -.+-..|- .+.+..+..+... .......+..
T Consensus 90 -gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~-- 165 (404)
T KOG1409|consen 90 -GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQFDA-- 165 (404)
T ss_pred -ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee-ccCCCCceee--
Confidence 8888886533 33444444 8899999999887777773 22233343 2333322211100 0000001100
Q ss_pred CeEEEEeeCCccCeEEEEEccC---CceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEE-EEecCCC
Q 015650 227 GSLVLVCPGLQKGQVRVEHYAS---KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ-EVRRGAD 302 (403)
Q Consensus 227 ~~~~~~~~g~~d~~i~v~d~~~---~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~-~~~~~~~ 302 (403)
..+..|...|.|.+-.+.. +.+..+.+|.+.+.+++|.+..++|.+|..|.. +.+||+.-.+-+. ++.+ |
T Consensus 166 ---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~-vi~wdigg~~g~~~el~g--h 239 (404)
T KOG1409|consen 166 ---LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS-VIMWDIGGRKGTAYELQG--H 239 (404)
T ss_pred ---EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc-eEEEeccCCcceeeeecc--c
Confidence 0222355556666554433 566778899999999999999999999999999 9999997554332 3333 7
Q ss_pred cccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCC
Q 015650 303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR 340 (403)
Q Consensus 303 ~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~ 340 (403)
...|..+..-+.-+.|.+++.||.|.+|+.+....+..
T Consensus 240 ~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etp 277 (404)
T KOG1409|consen 240 NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETP 277 (404)
T ss_pred hhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCc
Confidence 78899998888889999999999999999987765433
No 281
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.09 E-value=3.3e-07 Score=75.36 Aligned_cols=227 Identities=11% Similarity=0.120 Sum_probs=131.9
Q ss_pred EEEcCCCCEEEEEcCCcEEEEEcCCCeeEE--EEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCce
Q 015650 91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIF--RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC 168 (403)
Q Consensus 91 i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~ 168 (403)
++.+.||++||+-.|..|.|-..+..-... ...+.....-.-..++|++|+..++.+... |+|+++|+... .
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~-----G~i~vfdl~g~-~ 76 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAEST-----GTIRVFDLMGS-E 76 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCC-----CeEEEEecccc-e
Confidence 577899999999999998887654322111 122333445567889999999999988888 99999997653 3
Q ss_pred eEEEe--------cCCceeEEEEecCc-------eEEE--ecCeEEEEEcCC-----ceeeeEeec---cCCCceeEEEe
Q 015650 169 IGELS--------FRSEVRSVKLRRDR-------IIVV--LEQKIFVYNFAD-----LKLLHQIET---IANPKGLCAVS 223 (403)
Q Consensus 169 ~~~~~--------~~~~i~~~~~~~~~-------~~~~--~d~~i~i~d~~~-----~~~~~~~~~---~~~~~~~~~~~ 223 (403)
+..+. ....|..+.|.+-. .+++ .+|.++-|-+.. .+..+.+.. ....+..+.++
T Consensus 77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~ 156 (282)
T PF15492_consen 77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH 156 (282)
T ss_pred eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence 33332 23456677775432 3333 577777666532 233444432 35577788888
Q ss_pred eCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEE--EEEeCCCc-----EEEEEEcCCCcEEEE
Q 015650 224 QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLL--ATSSTKGT-----LVRIFNTLDGTLLQE 296 (403)
Q Consensus 224 ~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l--~s~~~dg~-----~i~iwd~~~~~~~~~ 296 (403)
+..+- +..+|.....-..+ .+-...+++-..-.+..+. ++...|+. ...+|.+-+.+...
T Consensus 157 p~h~L--LlVgG~~~~~~~~s----------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs- 223 (282)
T PF15492_consen 157 PKHRL--LLVGGCEQNQDGMS----------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS- 223 (282)
T ss_pred CCCCE--EEEeccCCCCCccc----------cccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeee-
Confidence 77653 33345444321110 0111122222221111111 11222211 02344443332221
Q ss_pred EecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 297 ~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
.. ......|..|..||||+.||+...+|.|.+|++.+-+.
T Consensus 224 ~~-~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 224 RQ-GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred cc-ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 11 12457899999999999999999999999999988764
No 282
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.06 E-value=1e-09 Score=109.25 Aligned_cols=195 Identities=13% Similarity=0.205 Sum_probs=147.3
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650 81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (403)
Q Consensus 81 ~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~ 159 (403)
...+-..|.++.=+|...+.++|+.++ |++|....++.++..... ....++.+.|+.+|..+..+..| |.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~--g~s~vtr~~f~~qGnk~~i~d~d-----g~l~ 2276 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA--GNSRVTRSRFNHQGNKFGIVDGD-----GDLS 2276 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc--CcchhhhhhhcccCCceeeeccC-----Ccee
Confidence 344567788888899889999988555 999999888877555443 44899999999999998888888 9999
Q ss_pred EEECCCCceeEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCC---ceeeeEeeccCCCceeEEEeeCCCeEEE
Q 015650 160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFAD---LKLLHQIETIANPKGLCAVSQGVGSLVL 231 (403)
Q Consensus 160 iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (403)
+|.+. .++....+ |.....++.|-.....-+ .++.+.+||..- ..++. ..|.+..+++++.|... ++
T Consensus 2277 l~q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~q--ll 2351 (2439)
T KOG1064|consen 2277 LWQAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQ--LL 2351 (2439)
T ss_pred ecccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcce--EE
Confidence 99976 45555555 888888888877333322 266899999543 12333 67888899999998754 44
Q ss_pred EeeCCccCeEEEEEccCCceeE-EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEec
Q 015650 232 VCPGLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299 (403)
Q Consensus 232 ~~~g~~d~~i~v~d~~~~~~~~-~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~ 299 (403)
.+ |+.+|.|++||++..+++. ++. ++ ...++++|+..|. |+||++.....+.++..
T Consensus 2352 is-ggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~-ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2352 IS-GGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGN-IKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred Ee-cCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccc-eEEEEccccchhhcCch
Confidence 44 5699999999998855432 222 44 5678999999999 99999988877777764
No 283
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.05 E-value=3.6e-07 Score=83.36 Aligned_cols=220 Identities=17% Similarity=0.179 Sum_probs=132.5
Q ss_pred CCEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecC
Q 015650 97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR 175 (403)
Q Consensus 97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~ 175 (403)
+..+.+++ ++.|..+|..+++......+..... ...... ++..++ ++.+ +.++.+|..+|+.+......
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~---~~p~v~-~~~v~v-~~~~-----g~l~ald~~tG~~~W~~~~~ 134 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLS---GGVGAD-GGLVFV-GTEK-----GEVIALDAEDGKELWRAKLS 134 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc---cceEEc-CCEEEE-EcCC-----CEEEEEECCCCcEeeeeccC
Confidence 44555555 5559999988888877666642111 122222 333333 3344 89999999999988777644
Q ss_pred CceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCc-----eeEEEeeCCCeEEEEeeCCccCeEEEEEccC
Q 015650 176 SEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS 248 (403)
Q Consensus 176 ~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~ 248 (403)
..+.+.-...++.+++ .++.|+.||.++|+.+..+....... ....+ . ++.+ ++ +..++.+..+|.++
T Consensus 135 ~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~-~~~v-~~--~~~~g~v~ald~~t 209 (377)
T TIGR03300 135 SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-A-DGGV-LV--GFAGGKLVALDLQT 209 (377)
T ss_pred ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-E-CCEE-EE--ECCCCEEEEEEccC
Confidence 4433222223455555 58899999999999887765433211 11111 1 2332 22 34678999999888
Q ss_pred CceeEEeecCC-----c---eEEEEEcC--CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEE
Q 015650 249 KRTKFIMAHDS-----R---IACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL 318 (403)
Q Consensus 249 ~~~~~~~~~~~-----~---i~~~~~sp--~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l 318 (403)
++..-...... . ...+.-+| .+..++.++.+|. ++.||.++|+.+-..... ....+. .++..|
T Consensus 210 G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~-l~a~d~~tG~~~W~~~~~----~~~~p~--~~~~~v 282 (377)
T TIGR03300 210 GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGR-VAALDLRSGRVLWKRDAS----SYQGPA--VDDNRL 282 (377)
T ss_pred CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCE-EEEEECCCCcEEEeeccC----CccCce--EeCCEE
Confidence 66432111000 0 00011111 3557778888999 999999999887655421 112222 256778
Q ss_pred EEEeCCCcEEEEEeecCCCC
Q 015650 319 AVSSDKGTVHVFNLKVNSGS 338 (403)
Q Consensus 319 ~s~~~dg~v~iwd~~~~~~~ 338 (403)
++++.+|.|+.+|..+++..
T Consensus 283 yv~~~~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 283 YVTDADGVVVALDRRSGSEL 302 (377)
T ss_pred EEECCCCeEEEEECCCCcEE
Confidence 88889999999999988754
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.04 E-value=1.1e-07 Score=77.03 Aligned_cols=191 Identities=10% Similarity=0.013 Sum_probs=124.0
Q ss_pred CeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe--cCCcee---EEEEecCceEEE-ecCeEEEEEcCCceeeeEeecc
Q 015650 140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVR---SVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETI 213 (403)
Q Consensus 140 ~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~--~~~~i~---~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~ 213 (403)
....++.++.. |...+|...+.+....+. +...|. ..+-+.-..+++ .|.++++.++.-+.....+...
T Consensus 83 kc~~la~gG~~-----g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~ 157 (344)
T KOG4532|consen 83 KCVTLADGGAS-----GQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ 157 (344)
T ss_pred cccEEEecccc-----ceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc
Confidence 45567777776 999999988665433322 333322 223333334444 4788888887654332222211
Q ss_pred CCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCcee----EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 015650 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK----FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (403)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~----~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~ 289 (403)
.-....+.++++++ ++++.| ....|..|.++..... ........-.+..|+.....+|++..||+ +.|||++
T Consensus 158 ~~~~ns~~~snd~~--~~~~Vg-ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~-~~I~DVR 233 (344)
T KOG4532|consen 158 NLTQNSLHYSNDPS--WGSSVG-DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGT-CAIYDVR 233 (344)
T ss_pred ccceeeeEEcCCCc--eEEEec-CCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCc-EEEEEec
Confidence 12256778888877 455556 6678888888763322 22233445578899999999999999999 9999998
Q ss_pred CCcEEEEE---ecCCCcccEEEEEeCCCCC--EEEEEeCCCcEEEEEeecCCCCC
Q 015650 290 DGTLLQEV---RRGADRAEIYSLAFSSNAQ--WLAVSSDKGTVHVFNLKVNSGSA 339 (403)
Q Consensus 290 ~~~~~~~~---~~~~~~~~v~~l~~s~d~~--~l~s~~~dg~v~iwd~~~~~~~~ 339 (403)
........ ....|.+.+..+.|++-|. +|...-.-+.+.+-|+++.+...
T Consensus 234 ~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 234 NMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred ccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 75433222 1233889999999998664 45555566789999999988643
No 285
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.03 E-value=4.9e-09 Score=86.45 Aligned_cols=240 Identities=12% Similarity=0.233 Sum_probs=151.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCee---EEEEecccCc------------ceeEEEEeeeC---CeEEE
Q 015650 84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE---IFRRDFERGG------------GIGVVEMLFRC---NILAL 144 (403)
Q Consensus 84 ~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~---~~~~~~~~~~------------~~~v~~~~~~~---~~~~~ 144 (403)
..+.|+++.|...|.+|++|..+| |.+|.-+.... .+...++ +| ...|..+.|-. ...++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQ-she~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQ-SHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhc-ccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 456799999999999999998777 88887543321 1111222 12 23455555533 23455
Q ss_pred eeCCCCCCCCCceEEEEECCCCc-------------------------------------ee-----EEEe--cCCceeE
Q 015650 145 VGGGPDPQYPLNKVMIWDDHQSR-------------------------------------CI-----GELS--FRSEVRS 180 (403)
Q Consensus 145 ~s~~~d~~~~~~~i~iwd~~~~~-------------------------------------~~-----~~~~--~~~~i~~ 180 (403)
+++.+ .+|++|.+.... .+ +.+. |...|.+
T Consensus 104 lstNd------ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS 177 (460)
T COG5170 104 LSTND------KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS 177 (460)
T ss_pred EecCC------ceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence 55543 799999864320 00 1121 5566788
Q ss_pred EEEecCceEEE-e-cCeEEEEEcCCce-ee--eEeecc-----CCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc
Q 015650 181 VKLRRDRIIVV-L-EQKIFVYNFADLK-LL--HQIETI-----ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR 250 (403)
Q Consensus 181 ~~~~~~~~~~~-~-d~~i~i~d~~~~~-~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~ 250 (403)
+.++.|...+. . |=.|.+|++.-.. .. ..++.+ ..-++...|+|.....++.+ +..|.|++-|++...
T Consensus 178 iS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS--sSkG~Ikl~DlRq~a 255 (460)
T COG5170 178 ISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS--SSKGEIKLNDLRQSA 255 (460)
T ss_pred eeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe--cCCCcEEehhhhhhh
Confidence 99998877766 3 5578999886421 11 112221 22456677888776666554 467999999998522
Q ss_pred -----eeE------------EeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC-cEEEEEecCC----------C
Q 015650 251 -----TKF------------IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGA----------D 302 (403)
Q Consensus 251 -----~~~------------~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~----------~ 302 (403)
... +..-...|..+.|+++|+|+++-..- + |+|||++.. .++.++..+. .
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-t-vkiwDvnm~k~pikTi~~h~~l~~~l~d~YE 333 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-T-VKIWDVNMAKNPIKTIPMHCDLMDELNDVYE 333 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-e-EEEEecccccCCceeechHHHHHHHHHhhhh
Confidence 111 12233568899999999999876554 4 999999764 4566664210 0
Q ss_pred cccE---EEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650 303 RAEI---YSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (403)
Q Consensus 303 ~~~v---~~l~~s~d~~~l~s~~~dg~v~iwd~~~ 334 (403)
...| ..+.||-|.+.+++|+..+...||-+.+
T Consensus 334 nDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 334 NDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred ccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 1222 3578898999999998888777776443
No 286
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.00 E-value=1.1e-06 Score=74.57 Aligned_cols=214 Identities=16% Similarity=0.167 Sum_probs=129.9
Q ss_pred CcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEec
Q 015650 106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR 185 (403)
Q Consensus 106 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~ 185 (403)
+.|..||..+++.+....+. .............++..++. +.+ +.|..||..+|+.+..+.....+.......
T Consensus 3 g~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~v~~~-~~~-----~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~ 75 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLG-PGIGGPVATAVPDGGRVYVA-SGD-----GNLYALDAKTGKVLWRFDLPGPISGAPVVD 75 (238)
T ss_dssp SEEEEEETTTTEEEEEEECS-SSCSSEEETEEEETTEEEEE-ETT-----SEEEEEETTTSEEEEEEECSSCGGSGEEEE
T ss_pred CEEEEEECCCCCEEEEEECC-CCCCCccceEEEeCCEEEEE-cCC-----CEEEEEECCCCCEEEEeeccccccceeeec
Confidence 44888998888888777664 21222232233234444444 233 899999999999988888544433322334
Q ss_pred CceEE-E-ecCeEEEEEcCCceeeeEe-eccCC---CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE-EeecC
Q 015650 186 DRIIV-V-LEQKIFVYNFADLKLLHQI-ETIAN---PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAHD 258 (403)
Q Consensus 186 ~~~~~-~-~d~~i~i~d~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~-~~~~~ 258 (403)
++.++ . .++.|+.+|..+|+.+..+ ..... ..........++.+++.. .++.|..+|.++++..- .....
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT---SSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE---TCSEEEEEETTTTEEEEEEESST
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe---ccCcEEEEecCCCcEEEEeecCC
Confidence 44444 4 4789999999999998884 32211 112233334456555443 47999999999876633 22222
Q ss_pred Cc----------eEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEE
Q 015650 259 SR----------IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVH 328 (403)
Q Consensus 259 ~~----------i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~ 328 (403)
.. +..-....++ .++.++.++..+.+ |+.+++.+-... ...+..+ ...++..|+.++.++.|.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~----~~~~~~~-~~~~~~~l~~~~~~~~l~ 225 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP----ISGIYSL-PSVDGGTLYVTSSDGRLY 225 (238)
T ss_dssp T-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC----SS-ECEC-EECCCTEEEEEETTTEEE
T ss_pred CCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec----CCCccCC-ceeeCCEEEEEeCCCEEE
Confidence 11 1122222345 67777777752455 999999663222 1223331 346778888888999999
Q ss_pred EEEeecCC
Q 015650 329 VFNLKVNS 336 (403)
Q Consensus 329 iwd~~~~~ 336 (403)
.||+++++
T Consensus 226 ~~d~~tG~ 233 (238)
T PF13360_consen 226 ALDLKTGK 233 (238)
T ss_dssp EEETTTTE
T ss_pred EEECCCCC
Confidence 99999998
No 287
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=9.4e-08 Score=88.30 Aligned_cols=236 Identities=13% Similarity=0.065 Sum_probs=165.5
Q ss_pred CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeC------------CeEEEeeCCCCCCCC
Q 015650 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC------------NILALVGGGPDPQYP 154 (403)
Q Consensus 87 ~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------~~~~~~s~~~d~~~~ 154 (403)
.-.++.|+|.| ++|.|+..-|.|-|..+.+.+ ..++ .|...|+.+.|.| -...+++++..
T Consensus 17 N~~A~Dw~~~G-LiAygshslV~VVDs~s~q~i--qsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~---- 88 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSHSLVSVVDSRSLQLI--QSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS---- 88 (1062)
T ss_pred cccccccCccc-eEEEecCceEEEEehhhhhhh--hccc-cCccceeEEEeccCCCchhccCccccceeEEecccc----
Confidence 35678898865 888998888999997766655 5665 6888899988865 23567788877
Q ss_pred CceEEEEECCCCceeEEEe-cCCceeEEEEecC---c-eEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCC
Q 015650 155 LNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD---R-IIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV 226 (403)
Q Consensus 155 ~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~---~-~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (403)
|.|.+||...+..+..+. +..++..++|-+. . .+++ ...++.+|+..+|+.+...........++.+.|-+
T Consensus 89 -GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd 167 (1062)
T KOG1912|consen 89 -GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFD 167 (1062)
T ss_pred -CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCC
Confidence 999999999999888888 7788999999763 3 2333 47799999999999988877666666677787755
Q ss_pred CeEEEEeeCCccCeEEEEEccC--------CceeEEeecCC-------------------------ceEEEEEcCCCCEE
Q 015650 227 GSLVLVCPGLQKGQVRVEHYAS--------KRTKFIMAHDS-------------------------RIACFALTQDGQLL 273 (403)
Q Consensus 227 ~~~~~~~~g~~d~~i~v~d~~~--------~~~~~~~~~~~-------------------------~i~~~~~sp~g~~l 273 (403)
...+.+. | ..|.+.+-+.-. ++.+....|.. ....++|+|.-+.+
T Consensus 168 ~rh~~~l-~-s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 168 SRHFCVL-G-SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred cceEEEE-c-cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 4433333 3 456666655432 11222122221 01124678876666
Q ss_pred EEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCC--EEEEEeCCCcEEEEEeecCC
Q 015650 274 ATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ--WLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 274 ~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~--~l~s~~~dg~v~iwd~~~~~ 336 (403)
+....... +.|+|++-..++..+... .+.+.-+.+-|+++ .|.+.-.||.+.||--+...
T Consensus 246 lfi~~pre-llv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~ 307 (1062)
T KOG1912|consen 246 LFITFPRE-LLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP 307 (1062)
T ss_pred EEEEeccc-eEEEcchhhceeEEEEec--cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence 55666667 999999888888777652 34455566666665 68899999999999877643
No 288
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.96 E-value=1.6e-07 Score=77.06 Aligned_cols=240 Identities=10% Similarity=0.081 Sum_probs=150.1
Q ss_pred CCCeEEEEEcC---CCC-EEEEEc-CCcEEEEEcCCCeeE-EEEecccCcc---eeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650 85 PPTLLHISFNQ---DHG-CFAAGT-DHGFRIYNCDPFREI-FRRDFERGGG---IGVVEMLFRCNILALVGGGPDPQYPL 155 (403)
Q Consensus 85 ~~~i~~i~~s~---d~~-~l~~~~-~~~i~iw~~~~~~~~-~~~~~~~~~~---~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (403)
...+..|.|.. +|. .++-+. .+.|.+|..+..... ..+.+. ... ....++.|++.+..++++..+
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls-~~ki~~~~~lslD~~~~~~~i~vs~s~----- 142 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS-SKKISVVEALSLDISTSGTKIFVSDSR----- 142 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccc-hhhhhheeeeEEEeeccCceEEEEcCC-----
Confidence 34566667753 445 334444 444888876543322 112222 111 124567788877777777777
Q ss_pred ceEEEEECCCCcee--EEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcC-CceeeeE-eeccCCCceeEEEeeCC
Q 015650 156 NKVMIWDDHQSRCI--GELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFA-DLKLLHQ-IETIANPKGLCAVSQGV 226 (403)
Q Consensus 156 ~~i~iwd~~~~~~~--~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~-~~~~~~~-~~~~~~~~~~~~~~~~~ 226 (403)
|.+.+-+....... +..+ |+.++....|+....-++ -|+.+..||++ .++.+.. .+.|...|.++.-+|..
T Consensus 143 G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~ 222 (339)
T KOG0280|consen 143 GSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPK 222 (339)
T ss_pred CcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCC
Confidence 88886665555433 3566 888999999987655444 38899999998 3444433 45566666666666553
Q ss_pred CeEEEEeeCCccCeEEEEEccC-CceeEEeecCCceEEEEEcCC--CCEEEEEeCCCcEEEEEEcCCCcEE-----EEEe
Q 015650 227 GSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQD--GQLLATSSTKGTLVRIFNTLDGTLL-----QEVR 298 (403)
Q Consensus 227 ~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~--g~~l~s~~~dg~~i~iwd~~~~~~~-----~~~~ 298 (403)
. .++++ |+.|..|++||.++ ++...-..-.+.|..+..+|. +++|+++-.+| .+|-+...+... ...+
T Consensus 223 ~-~~I~T-GsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G--~ki~~~~~~~~e~~~~~~s~~ 298 (339)
T KOG0280|consen 223 P-TYIAT-GSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG--AKILDSSDKVLEFQIVLPSDK 298 (339)
T ss_pred C-ceEEE-eccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC--ceEEEecccccchheeeeccc
Confidence 3 34554 78999999999996 333333334588999999983 45566666666 688887654322 2222
Q ss_pred cCCCcccEEEEEeCCCCCEEEEEe-CCCcEE-EEEeecCC
Q 015650 299 RGADRAEIYSLAFSSNAQWLAVSS-DKGTVH-VFNLKVNS 336 (403)
Q Consensus 299 ~~~~~~~v~~l~~s~d~~~l~s~~-~dg~v~-iwd~~~~~ 336 (403)
.|.+-+..-.|......|++++ .|+.++ +|-.-+++
T Consensus 299 --~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 299 --IHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred --cccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 2555666667755556788876 677755 88776665
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=1.3e-09 Score=96.58 Aligned_cols=204 Identities=16% Similarity=0.196 Sum_probs=145.8
Q ss_pred EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC-------ceeEEEe-cCCceeEEEEecCceEEE-e
Q 015650 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDRIIVV-L 192 (403)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~-------~~~~~~~-~~~~i~~~~~~~~~~~~~-~ 192 (403)
..+. +|...|..+.--.+...+++++.| ++|++|.++.. .+..+++ |..+|.++.|-.+.++++ .
T Consensus 729 ~nf~-GH~~~iRai~AidNENSFiSASkD-----KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc 802 (1034)
T KOG4190|consen 729 CNFT-GHQEKIRAIAAIDNENSFISASKD-----KTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC 802 (1034)
T ss_pred eccc-CcHHHhHHHHhcccccceeeccCC-----ceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec
Confidence 4454 788888888777777788999999 99999998642 3445555 999999999999999888 7
Q ss_pred cCeEEEEEcCCceeeeEeec--cCCCceeEEEeeC-CCeEEEEeeCCccCeEEEEEccCCce----eEE--eecCCceEE
Q 015650 193 EQKIFVYNFADLKLLHQIET--IANPKGLCAVSQG-VGSLVLVCPGLQKGQVRVEHYASKRT----KFI--MAHDSRIAC 263 (403)
Q Consensus 193 d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~g~~d~~i~v~d~~~~~~----~~~--~~~~~~i~~ 263 (403)
|+.|.+||.--++.+..+.. ..+.+..+..-++ ...++++ ..+...+|+++|.+.... +.- .+....+.+
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliA-gcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIA-GCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheee-eccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 99999999877776654422 1223333333343 3444333 235678999999887432 222 234566899
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEE-EEeecCC
Q 015650 264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV-FNLKVNS 336 (403)
Q Consensus 264 ~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~i-wd~~~~~ 336 (403)
++..+.|+.++.+-.+|. |.+.|.++|+.+..++.. ......++- |..+.|+....|.++.+ |..-.+.
T Consensus 882 iaVa~~GN~lAa~LSnGc-i~~LDaR~G~vINswrpm--ecdllqlaa-psdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 882 IAVADKGNKLAAALSNGC-IAILDARNGKVINSWRPM--ECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred EEeccCcchhhHHhcCCc-EEEEecCCCceeccCCcc--cchhhhhcC-chhHHHHhhcccceeEeeehhcCCe
Confidence 999999999999999999 999999999998877742 223333432 55567777777888888 8765543
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.94 E-value=2.8e-07 Score=74.78 Aligned_cols=236 Identities=15% Similarity=0.140 Sum_probs=136.1
Q ss_pred EEEEEcCC-----CCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCceEEEE
Q 015650 89 LHISFNQD-----HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIW 161 (403)
Q Consensus 89 ~~i~~s~d-----~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~i~iw 161 (403)
..|.|.|- ..+||.|+..+ +.+|...+.+.... ... .+...|.-..-..+ ..-+.-++.| .++++.
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~-~cd-~snn~v~~~~r~cd~~~~~~i~snd-----ht~k~~ 143 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLY-QCD-VSNNDVTLVKRYCDLKFPLNIASND-----HTGKTM 143 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCccccee-eec-ccccchhhhhhhcccccceeeccCC-----cceeEE
Confidence 34566553 35677776544 99999987665432 222 23332222111111 1112233344 677777
Q ss_pred ECCCCceeEEEe-cCCceeEEEEecCceEEEe---cCeEEEEEcCC-ceeeeEeecc--CCCceeEEEeeCCCeEEEEee
Q 015650 162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFAD-LKLLHQIETI--ANPKGLCAVSQGVGSLVLVCP 234 (403)
Q Consensus 162 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 234 (403)
++.-+.....+. ..-.+..+.+++|+++++. ...|..|.+.. ++.+..+... .+.-.+..|+... ..+|+
T Consensus 144 ~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~--~~FAv- 220 (344)
T KOG4532|consen 144 VVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND--LQFAV- 220 (344)
T ss_pred EEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc--ceEEE-
Confidence 765543332222 1134788999999999883 45788888865 3333222222 2222344444444 44454
Q ss_pred CCccCeEEEEEccCCce------eEEeecCCceEEEEEcCCCC--EEEEEeCCCcEEEEEEcCCCcEEEEEecCCC----
Q 015650 235 GLQKGQVRVEHYASKRT------KFIMAHDSRIACFALTQDGQ--LLATSSTKGTLVRIFNTLDGTLLQEVRRGAD---- 302 (403)
Q Consensus 235 g~~d~~i~v~d~~~~~~------~~~~~~~~~i~~~~~sp~g~--~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~---- 302 (403)
+..||.+.|||++.... ..-..|.+.+..+.|++-|. +|...-.-+. +.|.|+++++..+.+.....
T Consensus 221 ~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~-~hv~D~R~~~~~q~I~i~~d~~~~ 299 (344)
T KOG4532|consen 221 VFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSR-VHVVDTRNYVNHQVIVIPDDVERK 299 (344)
T ss_pred EecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcce-EEEEEcccCceeeEEecCcccccc
Confidence 45999999999997332 22345899999999998553 4444444556 99999999876665543211
Q ss_pred -c-ccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 303 -R-AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 303 -~-~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
. ..|..-.|+.++.-+.+.+++ .+.=|++.+..
T Consensus 300 ~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 300 HNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred ccccccccccccCCCcccccccch-hhheeeccccc
Confidence 1 236666777777666655544 35556665544
No 291
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.94 E-value=5.9e-09 Score=95.47 Aligned_cols=194 Identities=12% Similarity=0.120 Sum_probs=133.8
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC---eEEEeeCCCCCCCCCceEEEE
Q 015650 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN---ILALVGGGPDPQYPLNKVMIW 161 (403)
Q Consensus 85 ~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~~~d~~~~~~~i~iw 161 (403)
.+.+.++.++|.|+-+|.++..++.+-|++..-... +-+..-..-.+....|++. ...+++.+. ..-.+|
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~pp-r~l~h~tpw~vad~qws~h~a~~~wiVsts~------qkaiiw 96 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPP-RWLHHITPWQVADVQWSPHPAKPYWIVSTSN------QKAIIW 96 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEEEeccCCCCCc-eeeeccCcchhcceecccCCCCceeEEecCc------chhhhh
Confidence 456788899999999999999998888886322111 1221012223444455442 345666665 456788
Q ss_pred ECCCC--ceeEEEe--cCCceeEEEEecCceEEE----ecCeEEEEEcCCc-eeeeEeeccCCCceeEEEeeCCCeEEEE
Q 015650 162 DDHQS--RCIGELS--FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLV 232 (403)
Q Consensus 162 d~~~~--~~~~~~~--~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (403)
++... +.+.-+. |...|+++.|+++..-+. .|-.+..||++.. ..+..+.........+.|+...... ++
T Consensus 97 nlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~v-la 175 (1081)
T KOG0309|consen 97 NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNV-LA 175 (1081)
T ss_pred hhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcch-hh
Confidence 87543 3333333 788999999999876544 4889999999874 4566666566666788888876654 34
Q ss_pred eeCCccCeEEEEEccCC--ceeEEeecCCceEEEEEcC-CCCEEEEEeCCCcEEEEEEcC
Q 015650 233 CPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTL 289 (403)
Q Consensus 233 ~~g~~d~~i~v~d~~~~--~~~~~~~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~iwd~~ 289 (403)
. +..+.|.+||++.+ .+..+++|...|..+.|.. --..+.+++.|++ |++||..
T Consensus 176 s--shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~ 232 (1081)
T KOG0309|consen 176 S--SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYS 232 (1081)
T ss_pred h--ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeeccc
Confidence 3 45688999999874 4566778888899998875 2345778899999 9999873
No 292
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=2.2e-07 Score=85.28 Aligned_cols=229 Identities=10% Similarity=0.095 Sum_probs=146.7
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (403)
.++.+|...|.-+.|+...+.|.+...+| |.||-+-.+.-.. .-+.......|.+++|+.+|..++..-.| |.
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~E-EMiNnRnKSvV~SmsWn~dG~kIcIvYeD-----Ga 138 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCE-EMINNRNKSVVVSMSWNLDGTKICIVYED-----GA 138 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHH-HHhhCcCccEEEEEEEcCCCcEEEEEEcc-----CC
Confidence 56889999999999999999999988777 9999876554321 11222356788999999998887777777 88
Q ss_pred EEEEECCCCceeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCc-------eeeeEe----eccCCCceeEEE
Q 015650 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL-------KLLHQI----ETIANPKGLCAV 222 (403)
Q Consensus 158 i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~-------~~~~~~----~~~~~~~~~~~~ 222 (403)
|.+=.++..+ +.--. .......+.|++|...+. .+|.+.+||.... .+.... ......+..+.|
T Consensus 139 vIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w 217 (1189)
T KOG2041|consen 139 VIVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEW 217 (1189)
T ss_pred EEEEeeccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceee
Confidence 7776654332 21111 122345789999987665 6899999996532 111111 111122333333
Q ss_pred e--------eCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCc--------EEEEE
Q 015650 223 S--------QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--------LVRIF 286 (403)
Q Consensus 223 ~--------~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~--------~i~iw 286 (403)
. |+...+.++. .+|.+.+..-.+...-.+....-.+..+.|+++|..|+.++.+.. .|.+|
T Consensus 218 ~~g~~~~v~pdrP~lavcy---~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fy 294 (1189)
T KOG2041|consen 218 NTGPYQPVPPDRPRLAVCY---ANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFY 294 (1189)
T ss_pred ccCccccCCCCCCEEEEEE---cCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEe
Confidence 2 2334333333 567777766555333233333467889999999999999887531 16666
Q ss_pred EcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEE
Q 015650 287 NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV 320 (403)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s 320 (403)
. .-|+.+.+++. ....|+++.|-..|-.++.
T Consensus 295 s-p~G~i~gtlkv--pg~~It~lsWEg~gLriA~ 325 (1189)
T KOG2041|consen 295 S-PYGHIVGTLKV--PGSCITGLSWEGTGLRIAI 325 (1189)
T ss_pred c-cchhheEEEec--CCceeeeeEEcCCceEEEE
Confidence 4 45777888875 3467888888766554443
No 293
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.85 E-value=3.7e-06 Score=72.24 Aligned_cols=242 Identities=14% Similarity=0.121 Sum_probs=145.5
Q ss_pred EEEEcCCCCEEEEEc---------CCc--EEEEEcCCCeeEEEEecccCcceeE----EEEeeeCCeEEEeeCCCCCCCC
Q 015650 90 HISFNQDHGCFAAGT---------DHG--FRIYNCDPFREIFRRDFERGGGIGV----VEMLFRCNILALVGGGPDPQYP 154 (403)
Q Consensus 90 ~i~~s~d~~~l~~~~---------~~~--i~iw~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~s~~~d~~~~ 154 (403)
.+..+||++.+.++. +++ |.+||..+.....+..+...+...+ ..+.++.++.++....-.|
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP--- 116 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP--- 116 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS---
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCC---
Confidence 467899999887653 112 8999999988776666652212111 1223444444433322221
Q ss_pred CceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-ecCeEEEEEcC-CceeeeEe----eccCCCce-eEEEeeCCC
Q 015650 155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFA-DLKLLHQI----ETIANPKG-LCAVSQGVG 227 (403)
Q Consensus 155 ~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~-~~~~~~~~----~~~~~~~~-~~~~~~~~~ 227 (403)
...|.|.|+..++.+.++.-.+...-.-.-+++.... .||++.-..+. .|+..+.. .....++. .-++...+.
T Consensus 117 a~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~ 196 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG 196 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred CCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence 1678888888888888887666554444444543333 69998888887 45543222 11122221 234444555
Q ss_pred eEEEEeeCCccCeEEEEEccCCceeEEee-------------cCCceEEEEEcCCCCEEEEEeCC---------CcEEEE
Q 015650 228 SLVLVCPGLQKGQVRVEHYASKRTKFIMA-------------HDSRIACFALTQDGQLLATSSTK---------GTLVRI 285 (403)
Q Consensus 228 ~~~~~~~g~~d~~i~v~d~~~~~~~~~~~-------------~~~~i~~~~~sp~g~~l~s~~~d---------g~~i~i 285 (403)
.+++.+ ..|.|+-.|+.......... ..+.-.-+++++..++|+..-.. ++.|.+
T Consensus 197 ~~~F~S---y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 197 RLYFVS---YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp EEEEEB---TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred eEEEEe---cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 666654 77999999988755433211 11233457888766666653321 124999
Q ss_pred EEcCCCcEEEEEecCCCcccEEEEEeCCCCC-EEEEE-eCCCcEEEEEeecCCCCCC
Q 015650 286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVS-SDKGTVHVFNLKVNSGSAR 340 (403)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~-~~dg~v~iwd~~~~~~~~~ 340 (403)
+|+.+++.+..+.. ...+.+|+.+.|.+ +|++. ..++.|.+||..+++.+.+
T Consensus 274 ~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 274 YDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp EETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred EECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 99999999999984 35688999998877 55554 4688999999999985433
No 294
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.84 E-value=6.3e-06 Score=70.02 Aligned_cols=199 Identities=16% Similarity=0.096 Sum_probs=131.4
Q ss_pred EEeeeC-CeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCc--eeEEEEecCceEEEe--------cCeEEEEEc
Q 015650 134 EMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSE--VRSVKLRRDRIIVVL--------EQKIFVYNF 201 (403)
Q Consensus 134 ~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~--i~~~~~~~~~~~~~~--------d~~i~i~d~ 201 (403)
.++.+| ....++-+-+- .....+||..+++....+. ..+. --.-.|++||.++++ .|.|-|||.
T Consensus 9 ~~a~~p~~~~avafaRRP----G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRP----GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ceeeCCCCCeEEEEEeCC----CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 445555 34444444332 1568899999999888776 2222 225789999999882 568999999
Q ss_pred C-CceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCc---------------cCeEEEEEccCCceeE---E--eecCCc
Q 015650 202 A-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ---------------KGQVRVEHYASKRTKF---I--MAHDSR 260 (403)
Q Consensus 202 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------------d~~i~v~d~~~~~~~~---~--~~~~~~ 260 (403)
. +.+.+.++..+.-.-..+.+.++++.++++-.|-. +..+.+.|..++.+.. + .-|...
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 8 56778888776655567888999988877754311 1233344444544322 3 336778
Q ss_pred eEEEEEcCCCCEEEEEeCCCc------EEEEEEcCCCcEEEEEecC-----CCcccEEEEEeCCCCCEEEEEe-CCCcEE
Q 015650 261 IACFALTQDGQLLATSSTKGT------LVRIFNTLDGTLLQEVRRG-----ADRAEIYSLAFSSNAQWLAVSS-DKGTVH 328 (403)
Q Consensus 261 i~~~~~sp~g~~l~s~~~dg~------~i~iwd~~~~~~~~~~~~~-----~~~~~v~~l~~s~d~~~l~s~~-~dg~v~ 328 (403)
|..+++.++|..++..-..|. .|-+++ .++.+..+... ...+.+-+|+++.++.++++.+ ..+.+.
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 999999999987765544442 144444 33333333321 1236799999999999886666 788999
Q ss_pred EEEeecCCCC
Q 015650 329 VFNLKVNSGS 338 (403)
Q Consensus 329 iwd~~~~~~~ 338 (403)
+||..+++-.
T Consensus 243 ~~d~~tg~~~ 252 (305)
T PF07433_consen 243 VWDAATGRLL 252 (305)
T ss_pred EEECCCCCEe
Confidence 9999999853
No 295
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.80 E-value=1.8e-07 Score=75.53 Aligned_cols=176 Identities=16% Similarity=0.188 Sum_probs=108.8
Q ss_pred EEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCce-----eEEEEecCceEEE--------ecCeEEEEEcCCceeee
Q 015650 142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEV-----RSVKLRRDRIIVV--------LEQKIFVYNFADLKLLH 208 (403)
Q Consensus 142 ~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i-----~~~~~~~~~~~~~--------~d~~i~i~d~~~~~~~~ 208 (403)
.-++.+..| |.+.+++.+.- ..+.+..++ .+.++...+.++. .-+..++|+++..+.+.
T Consensus 102 t~V~~~~~d-----g~~~v~s~~~~---~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~ 173 (319)
T KOG4714|consen 102 NRVCIGYAD-----GSLAVFSTDKD---LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI 173 (319)
T ss_pred CceEecCCC-----ceEEEEechHH---HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccc
Confidence 346677777 99999986652 222222211 1222223333333 24466777776543322
Q ss_pred EeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC--ceeEEeecCCceEEEEEcC-CCCEEEEEeCCCcEEEE
Q 015650 209 QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRI 285 (403)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~--~~~~~~~~~~~i~~~~~sp-~g~~l~s~~~dg~~i~i 285 (403)
.-......+..++-+|..++++ +.|+.||.+-+||.+.. ....+..|+.+|..+-|+| ++..|+++++||. +.-
T Consensus 174 ~~~~~~~~v~~l~~hp~qq~~v--~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs-lw~ 250 (319)
T KOG4714|consen 174 PSKKALDAVTALCSHPAQQHLV--CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS-LWH 250 (319)
T ss_pred ccccccccchhhhCCcccccEE--EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc-EEE
Confidence 2222233477788888776543 34679999999999884 3455788999999999999 7788999999999 999
Q ss_pred EEcCCCcEEEE---------------------EecC--CCcccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650 286 FNTLDGTLLQE---------------------VRRG--ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (403)
Q Consensus 286 wd~~~~~~~~~---------------------~~~~--~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd 331 (403)
||..+ +.+.. +..- .....|++ |.--|..|++|++-+.|++++
T Consensus 251 wdas~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 251 WDAST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EcCCC-ceEEecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence 99753 22210 0000 00012222 334577899999888888875
No 296
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=2.6e-08 Score=88.49 Aligned_cols=236 Identities=12% Similarity=0.211 Sum_probs=157.9
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCe-----eEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCC
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR-----EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 152 (403)
..+.+|.+.|..++--.+..-+++++ |++|++|.+.+.. ..+..++. .|...|.++.|-.+...+++++
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~-aHkk~i~~igfL~~lr~i~ScD---- 803 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ-AHKKPIHDIGFLADLRSIASCD---- 803 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhh-hccCcccceeeeeccceeeecc----
Confidence 45889999999987766666666665 7779999986432 22445665 7899999999999999999887
Q ss_pred CCCceEEEEECCCCceeEEEe---cCCceeEEEEec--CceEEE----ecCeEEEEEcCCceeeeEeecc-----CCCce
Q 015650 153 YPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRR--DRIIVV----LEQKIFVYNFADLKLLHQIETI-----ANPKG 218 (403)
Q Consensus 153 ~~~~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~--~~~~~~----~d~~i~i~d~~~~~~~~~~~~~-----~~~~~ 218 (403)
|-|.+||.--++++..+. ..+.+..+..-+ +..++. ...+|+++|.+..+...+++.. ..-+.
T Consensus 804 ---~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 804 ---GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred ---CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 789999988888776554 233444444444 333333 4789999999988766666543 23456
Q ss_pred eEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEE-EEcCCCcEEEE
Q 015650 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI-FNTLDGTLLQE 296 (403)
Q Consensus 219 ~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~i-wd~~~~~~~~~ 296 (403)
++++.+.|+.+..+ -.+|.|.+.|.+++.+ ..+.........++ .|..+.|+....|.+ +.| |...++.....
T Consensus 881 ~iaVa~~GN~lAa~---LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHs-laVnWhaldgimh~q 955 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAA---LSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHS-LAVNWHALDGIMHLQ 955 (1034)
T ss_pred EEEeccCcchhhHH---hcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccce-eEeeehhcCCeeeec
Confidence 88888888865433 4679999999998774 33443333333333 356667887778888 888 98777766555
Q ss_pred EecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (403)
Q Consensus 297 ~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd 331 (403)
.+... .+..- ...-|.-|+++.....+.+|.
T Consensus 956 ~kppp--epahf--lqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 956 DKPPP--EPAHF--LQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred cCCCC--cchhh--hhccCceeEEeccCcEEEEEe
Confidence 44321 11111 112355677776666677764
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.75 E-value=1.8e-07 Score=77.40 Aligned_cols=199 Identities=13% Similarity=0.206 Sum_probs=124.8
Q ss_pred cceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc-----eeEEEe-------------cCCceeEEEEecCc--
Q 015650 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-----CIGELS-------------FRSEVRSVKLRRDR-- 187 (403)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~-----~~~~~~-------------~~~~i~~~~~~~~~-- 187 (403)
....|+++.|...|.++++|+.. |.|.+|.-.... ...+++ -...|..+.|-.++
T Consensus 25 ead~ItaVefd~tg~YlatGDkg-----GRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r 99 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKG-----GRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR 99 (460)
T ss_pred ccceeeEEEeccccceEeecCCC-----ceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc
Confidence 45678899999999999999998 999999754332 111122 23457788887653
Q ss_pred -eEEE--ecCeEEEEEcCCcee--e-------------------------eEe----------------eccCCCceeEE
Q 015650 188 -IIVV--LEQKIFVYNFADLKL--L-------------------------HQI----------------ETIANPKGLCA 221 (403)
Q Consensus 188 -~~~~--~d~~i~i~d~~~~~~--~-------------------------~~~----------------~~~~~~~~~~~ 221 (403)
.+++ .|.+|++|.+..... + ..+ ..|.-.+..+.
T Consensus 100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS 179 (460)
T COG5170 100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS 179 (460)
T ss_pred ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee
Confidence 3444 488999998764310 0 000 11122223344
Q ss_pred EeeCCCeEEEEeeCCccCeEEEEEccC--Cc--eeEEeecC-----CceEEEEEcCCC-CEEEEEeCCCcEEEEEEcCCC
Q 015650 222 VSQGVGSLVLVCPGLQKGQVRVEHYAS--KR--TKFIMAHD-----SRIACFALTQDG-QLLATSSTKGTLVRIFNTLDG 291 (403)
Q Consensus 222 ~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~--~~~~~~~~-----~~i~~~~~sp~g-~~l~s~~~dg~~i~iwd~~~~ 291 (403)
+..+.. .+.+ ..|-.|.+|++.- +. +.-+++|. .-|++..|+|.. ..+...+..|. |++-|++..
T Consensus 180 ~NsD~e--t~lS--aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~-Ikl~DlRq~ 254 (460)
T COG5170 180 FNSDKE--TLLS--ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE-IKLNDLRQS 254 (460)
T ss_pred ecCchh--eeee--ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc-EEehhhhhh
Confidence 444433 3333 3678899998875 32 23344453 358889999953 45566777888 999999732
Q ss_pred c------EEEE--EecCC------CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650 292 T------LLQE--VRRGA------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 292 ~------~~~~--~~~~~------~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
. .+.. +.+-. -...|..+.|+++|+++++-. =-+|+|||++..+.
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~ 313 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKN 313 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccC
Confidence 1 1111 11100 124688899999999998865 45899999998774
No 298
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.75 E-value=4.1e-08 Score=56.91 Aligned_cols=39 Identities=31% Similarity=0.581 Sum_probs=35.4
Q ss_pred CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650 291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (403)
Q Consensus 291 ~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd 331 (403)
++++.++.+ |...|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~--h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRG--HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEES--SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcC--CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357778886 779999999999999999999999999997
No 299
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.74 E-value=8.3e-06 Score=74.78 Aligned_cols=221 Identities=11% Similarity=0.094 Sum_probs=127.5
Q ss_pred CEEEEEc-CCcEEEEEcCCCeeEEEEecccCcce--------eE-EEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650 98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGI--------GV-VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (403)
Q Consensus 98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~--------~v-~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~ 167 (403)
..+.+++ ++.+.-+|.++++......+. .... .+ ..+.... +..++. ..+ +.++-+|.++|+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~~~~v~~-~~v~v~-~~~-----g~l~ald~~tG~ 141 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLS-EKDGWFSKNKSALLSGGVTVAG-GKVYIG-SEK-----GQVYALNAEDGE 141 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCC-CcccccccccccccccccEEEC-CEEEEE-cCC-----CEEEEEECCCCC
Confidence 3444444 455888888888877766664 1100 00 0122222 333333 344 899999999999
Q ss_pred eeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCc-----eeEEEeeCCCeEEEEeeCCccCe
Q 015650 168 CIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQKGQ 240 (403)
Q Consensus 168 ~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~d~~ 240 (403)
.+...+....+.+--.-.++.+++ .++.++.+|.++|+.+..+....... ....+ .++.+++. ..++.
T Consensus 142 ~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~---~~~g~ 216 (394)
T PRK11138 142 VAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVG---GDNGR 216 (394)
T ss_pred CcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEE---cCCCE
Confidence 988877444333211122555555 47899999999999988775431110 11111 12333332 35788
Q ss_pred EEEEEccCCceeEEeecCC--------ceEEEEEcC--CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEE
Q 015650 241 VRVEHYASKRTKFIMAHDS--------RIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (403)
Q Consensus 241 i~v~d~~~~~~~~~~~~~~--------~i~~~~~sp--~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 310 (403)
+..+|..+++..-...... ....+.-+| .+..++.++.+|. +..+|..+|+.+-..... ....+.
T Consensus 217 v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~----~~~~~~ 291 (394)
T PRK11138 217 VSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN-LVALDLRSGQIVWKREYG----SVNDFA 291 (394)
T ss_pred EEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe-EEEEECCCCCEEEeecCC----CccCcE
Confidence 8888887765422111000 011111222 3456777778898 999999999876554321 111222
Q ss_pred eCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650 311 FSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (403)
Q Consensus 311 ~s~d~~~l~s~~~dg~v~iwd~~~~~~~ 338 (403)
. ++..|+.++.+|.|+.+|..+++..
T Consensus 292 ~--~~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 292 V--DGGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred E--ECCEEEEEcCCCeEEEEECCCCcEE
Confidence 2 4667778888999999999988753
No 300
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.74 E-value=6.2e-06 Score=80.46 Aligned_cols=236 Identities=13% Similarity=0.125 Sum_probs=135.1
Q ss_pred EEEEcCCCCEEEEEcCCc---EEEEEcCCCee---EEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650 90 HISFNQDHGCFAAGTDHG---FRIYNCDPFRE---IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (403)
Q Consensus 90 ~i~~s~d~~~l~~~~~~~---i~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~ 163 (403)
+...+|.-..++++...+ +.++.+..... .............|.++.|..+...++-+... |.|.+-|.
T Consensus 23 ~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~-----G~iilvd~ 97 (1265)
T KOG1920|consen 23 AFILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLADTNSICVITAL-----GDIILVDP 97 (1265)
T ss_pred heeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEecccceEEEEecC-----CcEEEEcc
Confidence 334445544555553222 55555533222 11111112334688999987765554444444 88888887
Q ss_pred CCCceeEEEecCCceeEEEEecCceEEE--e-cCeEEEEEcCCc------------------------eeeeEeeccCC-
Q 015650 164 HQSRCIGELSFRSEVRSVKLRRDRIIVV--L-EQKIFVYNFADL------------------------KLLHQIETIAN- 215 (403)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~-d~~i~i~d~~~~------------------------~~~~~~~~~~~- 215 (403)
.+......=.-...|.+++|+||+.+++ + .+++.+.+ .+. +.-..|.+..+
T Consensus 98 et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr 176 (1265)
T KOG1920|consen 98 ETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGR 176 (1265)
T ss_pred cccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhccccccccccccccceecccccceeeecchhh
Confidence 7765443333678999999999998888 2 23444332 111 11112221111
Q ss_pred --------------------CceeEEEeeCCCeEEEEeeC---Ccc-CeEEEEEccCCceeE-EeecCCceEEEEEcCCC
Q 015650 216 --------------------PKGLCAVSQGVGSLVLVCPG---LQK-GQVRVEHYASKRTKF-IMAHDSRIACFALTQDG 270 (403)
Q Consensus 216 --------------------~~~~~~~~~~~~~~~~~~~g---~~d-~~i~v~d~~~~~~~~-~~~~~~~i~~~~~sp~g 270 (403)
.-..++|..||+ ++++++ ..+ ..|++||-+. .+.. -....+.-.+++|-|.|
T Consensus 177 ~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~--~fAVs~~~~~~~~RkirV~drEg-~Lns~se~~~~l~~~LsWkPsg 253 (1265)
T KOG1920|consen 177 QAARQKIEKEKALEQIEQDDHKTSISWRGDGE--YFAVSFVESETGTRKIRVYDREG-ALNSTSEPVEGLQHSLSWKPSG 253 (1265)
T ss_pred hcccccccccccccchhhccCCceEEEccCCc--EEEEEEEeccCCceeEEEecccc-hhhcccCcccccccceeecCCC
Confidence 112244444444 555421 133 7899999873 3322 22333445689999999
Q ss_pred CEEEEEe---CCCcEEEEEEcCCCcEEEEEec--CCCcccEEEEEeCCCCCEEEE---EeCCCcEEEEEeecCC
Q 015650 271 QLLATSS---TKGTLVRIFNTLDGTLLQEVRR--GADRAEIYSLAFSSNAQWLAV---SSDKGTVHVFNLKVNS 336 (403)
Q Consensus 271 ~~l~s~~---~dg~~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~s~d~~~l~s---~~~dg~v~iwd~~~~~ 336 (403)
..+++-. .|+. |.+|. ++|-.-..+.. ......|..++|+.++..||+ ......|++|-+.+..
T Consensus 254 s~iA~iq~~~sd~~-IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 254 SLIAAIQCKTSDSD-IVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CeEeeeeecCCCCc-EEEEe-cCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 9998743 3556 99997 45543333321 123345999999999999987 4455569999887654
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.72 E-value=1.4e-05 Score=73.36 Aligned_cols=220 Identities=12% Similarity=0.075 Sum_probs=126.9
Q ss_pred CEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCC
Q 015650 98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS 176 (403)
Q Consensus 98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~ 176 (403)
..+..++ ++.+..+|.++++......+. +. ........ ++..++.. .+ +.|.-+|.++|+.+..+....
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~--~~ssP~v~-~~~v~v~~-~~-----g~l~ald~~tG~~~W~~~~~~ 190 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVA-GE--ALSRPVVS-DGLVLVHT-SN-----GMLQALNESDGAVKWTVNLDV 190 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCC-Cc--eecCCEEE-CCEEEEEC-CC-----CEEEEEEccCCCEeeeecCCC
Confidence 3444554 555999999888887665553 11 11111222 34444433 33 889999999999888776322
Q ss_pred ce------eEEEEecCceEEE-ecCeEEEEEcCCceeeeEeeccCCC-------ceeEEEee--CCCeEEEEeeCCccCe
Q 015650 177 EV------RSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANP-------KGLCAVSQ--GVGSLVLVCPGLQKGQ 240 (403)
Q Consensus 177 ~i------~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~g~~d~~ 240 (403)
+. .......+..++. .++.+..+|..+|+.+......... ...+..+| .++.+++. +.++.
T Consensus 191 ~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~---~~~g~ 267 (394)
T PRK11138 191 PSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYAL---AYNGN 267 (394)
T ss_pred CcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEE---EcCCe
Confidence 11 1112222333333 5889999999998877665321110 00001111 23444443 25789
Q ss_pred EEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEE
Q 015650 241 VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV 320 (403)
Q Consensus 241 i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s 320 (403)
+..+|..+++..-..... ....+.. ++..|+.++.+|. |..+|..+|+.+-......+ ....+... .+.+|+.
T Consensus 268 l~ald~~tG~~~W~~~~~-~~~~~~~--~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~~~-~~~~sp~v--~~g~l~v 340 (394)
T PRK11138 268 LVALDLRSGQIVWKREYG-SVNDFAV--DGGRIYLVDQNDR-VYALDTRGGVELWSQSDLLH-RLLTAPVL--YNGYLVV 340 (394)
T ss_pred EEEEECCCCCEEEeecCC-CccCcEE--ECCEEEEEcCCCe-EEEEECCCCcEEEcccccCC-CcccCCEE--ECCEEEE
Confidence 999999887654322211 1112222 4567778888999 99999999987544331101 11222222 2567788
Q ss_pred EeCCCcEEEEEeecCCC
Q 015650 321 SSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 321 ~~~dg~v~iwd~~~~~~ 337 (403)
++.+|.|++.|.++++.
T Consensus 341 ~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 341 GDSEGYLHWINREDGRF 357 (394)
T ss_pred EeCCCEEEEEECCCCCE
Confidence 89999999999999873
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=1.2e-07 Score=79.47 Aligned_cols=145 Identities=12% Similarity=0.149 Sum_probs=107.1
Q ss_pred ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC-----ceeEEeecCCceEEEEE
Q 015650 192 LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-----RTKFIMAHDSRIACFAL 266 (403)
Q Consensus 192 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~-----~~~~~~~~~~~i~~~~~ 266 (403)
.+..|-+-|+++|-. +.|. ....|....|...++ ++..|..+|.|..+|++.+ ......-|...|+++..
T Consensus 232 ~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~n---Lv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~ 306 (425)
T KOG2695|consen 232 LSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDN---LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQI 306 (425)
T ss_pred ccceeEEEEeecccc-cccc-cchhHHHHHhcccCC---eeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhh
Confidence 466788888877632 2232 344555666665444 3334789999999999974 23444568999999987
Q ss_pred cC-CCCEEEEEeCCCcEEEEEEcCCCcE---EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCC
Q 015650 267 TQ-DGQLLATSSTKGTLVRIFNTLDGTL---LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE 342 (403)
Q Consensus 267 sp-~g~~l~s~~~dg~~i~iwd~~~~~~---~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 342 (403)
-. ++.+|++.+.+|+ |++||++-.++ +..+.+|.....-.-+...+....++++++|...+||.++.+..+.++.
T Consensus 307 Lq~s~q~LmaS~M~gk-ikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGK-IKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hccccceEeeccCcCc-eeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 66 7889999999999 99999998777 8888876544444445566777788899999999999999988665554
No 303
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.70 E-value=8.3e-06 Score=74.29 Aligned_cols=176 Identities=11% Similarity=0.089 Sum_probs=116.7
Q ss_pred ceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE-----ec--CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC
Q 015650 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-----LE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-----~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (403)
..+.+-|.. +...+.+. ....+..-.|+|++..++ .. ..++++|+.+++....+. .........|+|+++
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 566666654 65555665 556777889999988766 12 369999999887655554 334446779999999
Q ss_pred eEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcE--EEEEEcCCCcEEEEEecCCCccc
Q 015650 228 SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTL--VRIFNTLDGTLLQEVRRGADRAE 305 (403)
Q Consensus 228 ~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~--i~iwd~~~~~~~~~~~~~~~~~~ 305 (403)
.+++.......-.|.++|+.++....+..-.+.-..-.|+|||++|+..+..+.. |.+.|++..... .+... ...
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~--~~~ 327 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFS--GGG 327 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-Eeecc--CCC
Confidence 8877765544455777788887766655544444577899999999877664421 666676655543 33321 122
Q ss_pred EEEEEeCCCCCEEEEEeC-CCc--EEEEEeecCC
Q 015650 306 IYSLAFSSNAQWLAVSSD-KGT--VHVFNLKVNS 336 (403)
Q Consensus 306 v~~l~~s~d~~~l~s~~~-dg~--v~iwd~~~~~ 336 (403)
-..-.|+|||++|+..+. +|. |.+.++.++.
T Consensus 328 ~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 328 NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 227889999999987764 344 5555555544
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.70 E-value=1.7e-05 Score=65.47 Aligned_cols=198 Identities=12% Similarity=0.074 Sum_probs=105.6
Q ss_pred CCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEe----cccCcceeEEEEeeeCC-------eEEEeeCCCCCCC
Q 015650 86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRD----FERGGGIGVVEMLFRCN-------ILALVGGGPDPQY 153 (403)
Q Consensus 86 ~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~-------~~~~~s~~~d~~~ 153 (403)
..=..++|+||+.+||.+...| |++||+.... ++... +...-...|..+.|-.. ...++-.- .
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y-~--- 118 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY-R--- 118 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEec-c---
Confidence 3456789999999999998666 9999986533 22111 11122345555655331 12233222 2
Q ss_pred CCceEEEEECCC-----CceeEEEe----cCCceeEEEEecCceEEEecCeEEEEEcCCceeeeEeeccCCCceeEEEee
Q 015650 154 PLNKVMIWDDHQ-----SRCIGELS----FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ 224 (403)
Q Consensus 154 ~~~~i~iwd~~~-----~~~~~~~~----~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (403)
|.++-|-+.. .+....+. +...|.++.++|..++++..|.-.- +++. -+.....+.+-.+-.
T Consensus 119 --G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~---~~~~----s~a~~~GLtaWRiL~ 189 (282)
T PF15492_consen 119 --GQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN---QDGM----SKASSCGLTAWRILS 189 (282)
T ss_pred --ceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC---CCcc----ccccccCceEEEEcC
Confidence 5666665422 23344444 4678999999998776662111000 0000 000011111111111
Q ss_pred CCCeEEEEeeCCccC------eEEEEEccCCceeEE-eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 015650 225 GVGSLVLVCPGLQKG------QVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV 297 (403)
Q Consensus 225 ~~~~~~~~~~g~~d~------~i~v~d~~~~~~~~~-~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~ 297 (403)
+......+. ..+++ .-.+|.+-+...... ......|..|.+||||..||+...+|. |.+|++.+.++.+.+
T Consensus 190 ~~Pyyk~v~-~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~-lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 190 DSPYYKQVT-SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGS-LSLWEIPSLRLQRSW 267 (282)
T ss_pred CCCcEEEcc-ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCe-EEEEecCcchhhccc
Confidence 111111111 11111 112333222222111 234667999999999999999999999 999999998888777
Q ss_pred ec
Q 015650 298 RR 299 (403)
Q Consensus 298 ~~ 299 (403)
..
T Consensus 268 ~~ 269 (282)
T PF15492_consen 268 KQ 269 (282)
T ss_pred ch
Confidence 64
No 305
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.70 E-value=6.5e-07 Score=76.72 Aligned_cols=155 Identities=12% Similarity=0.074 Sum_probs=105.5
Q ss_pred CeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCee----EEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEE
Q 015650 87 TLLHISFNQDHGCFAAGTD-HGFRIYNCDPFRE----IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (403)
Q Consensus 87 ~i~~i~~s~d~~~l~~~~~-~~i~iw~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iw 161 (403)
.+..+..++++++||++.. +...++++....+ .-...+. .....+..+............++. ..+.+|
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~-----~~~di~ 137 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDV-----YSFDIL 137 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeeeccceEEEEeecCCc-----eeeeee
Confidence 4555677888999998874 4455666643332 1112222 233445555555556666666666 788888
Q ss_pred ECCCCceeEEEecCCceeEEEEecCceEEE-e--cCeEEEEEcCCceeeeEe-eccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650 162 DDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L--EQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (403)
Q Consensus 162 d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~--d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~ 237 (403)
....+.+.-.+.|-..+.+++++||.++++ . |..|++-....--.+..+ -+|..-|..+++-++.. +++ |+.
T Consensus 138 s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~---LlS-~sG 213 (390)
T KOG3914|consen 138 SADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL---LLS-GSG 213 (390)
T ss_pred cccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce---eee-cCC
Confidence 877777777777999999999999999888 3 678888776654444444 46888888888876532 343 457
Q ss_pred cCeEEEEEccCCce
Q 015650 238 KGQVRVEHYASKRT 251 (403)
Q Consensus 238 d~~i~v~d~~~~~~ 251 (403)
|+++++||+++++.
T Consensus 214 D~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 214 DKTLRLWDITSGKL 227 (390)
T ss_pred CCcEEEEecccCCc
Confidence 99999999998653
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=3.8e-07 Score=79.21 Aligned_cols=247 Identities=15% Similarity=0.084 Sum_probs=168.6
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCC-CeeEEEEecccCcceeEEEEeeeCCeEEEeeCCC-CCCCCCceE
Q 015650 82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGP-DPQYPLNKV 158 (403)
Q Consensus 82 ~~~~~~i~~i~~s~d~~~l~~~~-~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-d~~~~~~~i 158 (403)
--|.+.|+.+..+. .+++.+++ |+.++.|.-.. ....+...+. .|...+.+++.+-++..+.+.+. | ..+
T Consensus 6 ymhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFr-aHL~~I~sl~~S~dg~L~~Sv~d~D-----hs~ 78 (558)
T KOG0882|consen 6 YMHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFR-AHLGVILSLAVSYDGWLFRSVEDPD-----HSV 78 (558)
T ss_pred hcccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhH-HHHHHHHhhhccccceeEeeccCcc-----cce
Confidence 34778888875543 56777887 66699998654 2223334444 67788889999999999999776 7 999
Q ss_pred EEEECCCCceeEEEecCCceeEEEEec-Cc--e-EEE----ecCeEEEEEcCCc--eeeeEeeccCCCceeEEEeeCCCe
Q 015650 159 MIWDDHQSRCIGELSFRSEVRSVKLRR-DR--I-IVV----LEQKIFVYNFADL--KLLHQIETIANPKGLCAVSQGVGS 228 (403)
Q Consensus 159 ~iwd~~~~~~~~~~~~~~~i~~~~~~~-~~--~-~~~----~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 228 (403)
+++|+++-..+.-++.......+.|.. .| . .++ .++.+.++|-... +....-.-|..++..+.+.+.++.
T Consensus 79 KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 79 KVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred eEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 999998876665444222222233322 22 1 222 3788999996543 223333567889999999998874
Q ss_pred EEEEeeCCccCeEEEEEccC------Cce----------eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc
Q 015650 229 LVLVCPGLQKGQVRVEHYAS------KRT----------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292 (403)
Q Consensus 229 ~~~~~~g~~d~~i~v~d~~~------~~~----------~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~ 292 (403)
.. +....|.|..|.... ..+ ..+...+....++.|+|+|..+.+-+.|.. |++++.++++
T Consensus 159 ~v---SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk-VR~F~~KtGk 234 (558)
T KOG0882|consen 159 AV---SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK-VRGFVFKTGK 234 (558)
T ss_pred ee---eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccE-EEEEEeccch
Confidence 32 245679999998774 111 112234556789999999999999999999 9999999987
Q ss_pred EEEEEec-------------------------------CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCC
Q 015650 293 LLQEVRR-------------------------------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR 340 (403)
Q Consensus 293 ~~~~~~~-------------------------------~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~ 340 (403)
.++.+.. ......-+.+.|...|++|+-++-=| |++.++.+++..+.
T Consensus 235 lvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri 312 (558)
T KOG0882|consen 235 LVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRI 312 (558)
T ss_pred hhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence 7665431 00112334577888899999888766 99999999885443
No 307
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.70 E-value=1.5e-05 Score=74.21 Aligned_cols=166 Identities=9% Similarity=0.012 Sum_probs=110.6
Q ss_pred ceEEEEECCCCceeEEEecCCceeEEEEecCceEEEec-------CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLE-------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (403)
+.+.+.|.++.+...++.-......+.+++++.+++.. .++...+..+...+..+... ...++.++++.
T Consensus 215 ~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~----~iea~vkdGK~ 290 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA----RIEEAVKAGKF 290 (635)
T ss_pred EEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH----HHHHhhhCCCE
Confidence 67778888887777777766677888999999888721 23333333222212111110 01133445664
Q ss_pred EEEEeeCCccCeEEEEEccC-----CceeEEeecCCceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcE---------
Q 015650 229 LVLVCPGLQKGQVRVEHYAS-----KRTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTL--------- 293 (403)
Q Consensus 229 ~~~~~~g~~d~~i~v~d~~~-----~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~--------- 293 (403)
.++ .++.|.+.|.++ ..+.....-......+.++|||+++++++. +.+ |.|.|+.+.+.
T Consensus 291 ~~V-----~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~t-VSVIDv~k~k~~~~~~~~~~ 364 (635)
T PRK02888 291 KTI-----GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPT-VTVIDVRKLDDLFDGKIKPR 364 (635)
T ss_pred EEE-----CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCc-EEEEEChhhhhhhhccCCcc
Confidence 443 246899999887 344444445566789999999999987665 667 99999987552
Q ss_pred ---EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650 294 ---LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (403)
Q Consensus 294 ---~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~ 334 (403)
..+...+ ..-...+|.++|....+---|..|..|++.+
T Consensus 365 ~~vvaevevG---lGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 365 DAVVAEPELG---LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ceEEEeeccC---CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3444432 3445688999998888888899999999987
No 308
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=1.3e-05 Score=74.76 Aligned_cols=94 Identities=14% Similarity=0.180 Sum_probs=67.4
Q ss_pred EEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE---------eCCCcEEEEEeecCCCCCCCC
Q 015650 272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS---------SDKGTVHVFNLKVNSGSARSE 342 (403)
Q Consensus 272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~---------~~dg~v~iwd~~~~~~~~~~~ 342 (403)
++|.|...|+ |.++|+.++..-+.+.. |...|.++.|--..+++-.+ +.-+.+.+-|+++|-...
T Consensus 439 LvAvGT~sGT-V~vvdvst~~v~~~fsv--ht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~--- 512 (1062)
T KOG1912|consen 439 LVAVGTNSGT-VDVVDVSTNAVAASFSV--HTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR--- 512 (1062)
T ss_pred eEEeecCCce-EEEEEecchhhhhhhcc--cccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccc---
Confidence 6788999999 99999999988888875 77899999997665544322 223457788888886411
Q ss_pred CCCCCCCCCcccccccccccccceeeeeeeeEEEEEe-CCCceEEEeccCCCEEEEEccC
Q 015650 343 PRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLV-EGSPYIVAFGHQKNTVVILGMD 401 (403)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~fs~d~~~l~~~~~d 401 (403)
+.-.+.+ +.+|..+..|.-|+||++.-.|
T Consensus 513 ------------------------------fR~l~~~despI~~irvS~~~~yLai~Fr~ 542 (1062)
T KOG1912|consen 513 ------------------------------FRGLQKPDESPIRAIRVSSSGRYLAILFRR 542 (1062)
T ss_pred ------------------------------cccCCCCCcCcceeeeecccCceEEEEecc
Confidence 1112222 3578888888899999887654
No 309
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=1.2e-07 Score=79.61 Aligned_cols=151 Identities=15% Similarity=0.176 Sum_probs=113.9
Q ss_pred EEcC--CCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC---
Q 015650 92 SFNQ--DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS--- 166 (403)
Q Consensus 92 ~~s~--d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~--- 166 (403)
+|+- .|-.+++|.+.+|-+-+++++.. ..|. ....|.++.|......+..|.+. |.|..+|++.+
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~---qsf~--sksDVfAlQf~~s~nLv~~GcRn-----geI~~iDLR~rnqG 287 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ---QSFQ--SKSDVFALQFAGSDNLVFNGCRN-----GEIFVIDLRCRNQG 287 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccc---cccc--cchhHHHHHhcccCCeeEecccC-----CcEEEEEeeecccC
Confidence 5543 24456778888899999887754 3453 66788899998877788888888 99999999764
Q ss_pred --ceeEEEecCCceeEEEEec-CceEEE---ecCeEEEEEcCCcee---eeEeeccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650 167 --RCIGELSFRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKL---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (403)
Q Consensus 167 --~~~~~~~~~~~i~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 237 (403)
.+...+.|...|+++..-. ++.++. .+|+|++||++--++ +.++++|.+....+-+.-+.+.-++++.| +
T Consensus 288 ~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G-d 366 (425)
T KOG2695|consen 288 NGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG-D 366 (425)
T ss_pred CCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc-C
Confidence 5667777999999998776 555555 589999999987666 88888887765555555555554555545 8
Q ss_pred cCeEEEEEccCCceeE
Q 015650 238 KGQVRVEHYASKRTKF 253 (403)
Q Consensus 238 d~~i~v~d~~~~~~~~ 253 (403)
|...++|.++.+.+..
T Consensus 367 DcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 367 DCYTRIWSLDSGHLLC 382 (425)
T ss_pred eeEEEEEecccCceee
Confidence 9999999999876544
No 310
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.65 E-value=1.5e-05 Score=72.84 Aligned_cols=221 Identities=14% Similarity=0.177 Sum_probs=121.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650 84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (403)
Q Consensus 84 ~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~ 163 (403)
..-....+.++|+|+++++++++...||........ .......+.|..++.+.+-.. . ++|.|+.-
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k--------~~G~g~~~vw~~~n~yAv~~~-~-----~~I~I~kn 96 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK--------AFGSGLSFVWSSRNRYAVLES-S-----STIKIYKN 96 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEE--------EEEE-SEEEE-TSSEEEEE-T-T-----S-EEEEET
T ss_pred CCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccc--------ccCceeEEEEecCccEEEEEC-C-----CeEEEEEc
Confidence 334467899999999999988888888874433322 123344566766665554443 3 78999743
Q ss_pred CCCceeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeE
Q 015650 164 HQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV 241 (403)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 241 (403)
-+.+....++.+..+..+-. |.+++ .++.|.+||+.+++.++.+... ++..+.|+++++.+.+++ +..+
T Consensus 97 ~~~~~~k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----~~~i 167 (443)
T PF04053_consen 97 FKNEVVKSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----KDSI 167 (443)
T ss_dssp TEE-TT-----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-----S-SE
T ss_pred CccccceEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe----CCeE
Confidence 33444345553333444433 66555 5667999999999999998743 378899999988666653 4577
Q ss_pred EEEEccCC------------ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEE
Q 015650 242 RVEHYASK------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL 309 (403)
Q Consensus 242 ~v~d~~~~------------~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l 309 (403)
.+++.+.. ....+......|.+..|..+ .++..+.. . |+-+ ..|+.- .+.. -..++.=+
T Consensus 168 ~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~-lkYl--~~Ge~~-~i~~--ld~~~yll 238 (443)
T PF04053_consen 168 YILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-H-LKYL--VNGETG-IIAH--LDKPLYLL 238 (443)
T ss_dssp EEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-E-EEEE--ETTEEE-EEEE---SS--EEE
T ss_pred EEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-e-EEEE--EcCCcc-eEEE--cCCceEEE
Confidence 77776655 55555554677889999765 44444444 5 7774 344432 2221 12456667
Q ss_pred EeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 310 AFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 310 ~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
.+.+....+.....|+.|..+.++...
T Consensus 239 gy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 239 GYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp EEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred EEEccCCEEEEEECCCCEEEEEECHHH
Confidence 777777788888889899888776543
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.63 E-value=1.2e-07 Score=54.85 Aligned_cols=37 Identities=32% Similarity=0.601 Sum_probs=34.4
Q ss_pred ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEE
Q 015650 250 RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (403)
Q Consensus 250 ~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd 287 (403)
.+..+.+|...|.+|+|+|++.+|++++.|+. |++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence 35678899999999999999999999999999 99997
No 312
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.63 E-value=0.00011 Score=62.27 Aligned_cols=183 Identities=15% Similarity=0.123 Sum_probs=112.1
Q ss_pred CCCEEEEE-cCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEE-e
Q 015650 96 DHGCFAAG-TDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL-S 173 (403)
Q Consensus 96 d~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~-~ 173 (403)
++..++++ .++.+..||..+++......+....... .....+..++++.+ +.|+.+|..+|+.+... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~ 104 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---PVVDGGRVYVGTSD-------GSLYALDAKTGKVLWSIYL 104 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---EEEETTEEEEEETT-------SEEEEEETTTSCEEEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---eeecccccccccce-------eeeEecccCCcceeeeecc
Confidence 44455554 5666999999999988777774221222 24445555555533 78999999999998884 3
Q ss_pred cC-C-----ceeEEEEecCceEEEe-cCeEEEEEcCCceeeeEeeccCCCce---------eEEEeeCCCeEEEEeeCCc
Q 015650 174 FR-S-----EVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKG---------LCAVSQGVGSLVLVCPGLQ 237 (403)
Q Consensus 174 ~~-~-----~i~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~ 237 (403)
.. . ......+..+..++.. ++.|+.+|+++|+.+........... .......++.+ +++ ..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~--~~ 181 (238)
T PF13360_consen 105 TSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRV-YVS--SG 181 (238)
T ss_dssp -SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEE-EEE--CC
T ss_pred ccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEE-EEE--cC
Confidence 21 1 1223333433333334 89999999999999888766432211 12222233333 333 24
Q ss_pred cCe-EEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEE
Q 015650 238 KGQ-VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295 (403)
Q Consensus 238 d~~-i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~ 295 (403)
++. +.+ |..+++... ......+..+ ...++..|+.++.++. |..||+++|+.+-
T Consensus 182 ~g~~~~~-d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~-l~~~d~~tG~~~W 236 (238)
T PF13360_consen 182 DGRVVAV-DLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGR-LYALDLKTGKVVW 236 (238)
T ss_dssp TSSEEEE-ETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTE-EEEEETTTTEEEE
T ss_pred CCeEEEE-ECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCE-EEEEECCCCCEEe
Confidence 554 555 999887553 3223333331 3467788888888998 9999999998763
No 313
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.62 E-value=1e-06 Score=71.23 Aligned_cols=74 Identities=16% Similarity=0.364 Sum_probs=59.7
Q ss_pred CceEEEEEcCCC-CEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC-CCCEEEEEeCCCcEEEEEeec
Q 015650 259 SRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLKV 334 (403)
Q Consensus 259 ~~i~~~~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~-d~~~l~s~~~dg~v~iwd~~~ 334 (403)
..|.+++-+|.. +++++|+.||. +.+||.++......+.. .|..+|+.+-|+| ++..|+++++||.+..||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~~~p~S~l~-ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGI-VGLWDARNVAMPVSLLK-AHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCe-EEEEEcccccchHHHHH-HhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 348999999955 45567788888 99999998755444433 3889999999998 567899999999999999885
No 314
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.61 E-value=3.8e-07 Score=85.90 Aligned_cols=178 Identities=17% Similarity=0.163 Sum_probs=121.5
Q ss_pred ecCceEEE-ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-CceeEEeecCCce
Q 015650 184 RRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRI 261 (403)
Q Consensus 184 ~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~i 261 (403)
.++..... ....+..+|+++.+..+........+..++. +++ ++. .|...|+|.+-|.++ +.+..+.+|.+.|
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr--~lf-~G~t~G~V~LrD~~s~~~iht~~aHs~si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNR--NLF-CGDTRGTVFLRDPNSFETIHTFDAHSGSI 220 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCc--EEE-eecccceEEeecCCcCceeeeeeccccce
Confidence 34433333 4567888999988877766554444444443 333 333 367899999999988 5577899999999
Q ss_pred EEEEEcCCCCEEEEEeC---------CCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCcEEEEE
Q 015650 262 ACFALTQDGQLLATSST---------KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFN 331 (403)
Q Consensus 262 ~~~~~sp~g~~l~s~~~---------dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~-~~l~s~~~dg~v~iwd 331 (403)
.++.. .|+.|++++. |.- |+|||++..+.+..+.-+ ..-.-+.|.|.- ..+++++..|...+-|
T Consensus 221 SDfDv--~GNlLitCG~S~R~~~l~~D~F-vkVYDLRmmral~PI~~~---~~P~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 221 SDFDV--QGNLLITCGYSMRRYNLAMDPF-VKVYDLRMMRALSPIQFP---YGPQFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred eeeec--cCCeEEEeecccccccccccch-hhhhhhhhhhccCCcccc---cCchhhhhcccccceEEEEecccceeecc
Confidence 87765 8899999886 444 899999988877666532 222456777754 4688889999999998
Q ss_pred eecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 332 LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
..+-.+.+. .+..+......+..+.+|+.|+.++.|..+|.
T Consensus 295 ~~~lsNP~~-------------------------------~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~ 335 (1118)
T KOG1275|consen 295 TATLSNPPA-------------------------------GVKMVNPNGSGISAFDISSNGDALAFGDHEGH 335 (1118)
T ss_pred ccccCCCcc-------------------------------ceeEEccCCCcceeEEecCCCceEEEecccCc
Confidence 544332100 01111222234788999999999999998873
No 315
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=8.1e-05 Score=64.69 Aligned_cols=207 Identities=13% Similarity=0.080 Sum_probs=124.2
Q ss_pred ceEEEEECCCCceeEEEecCCceeE-EEEecCceEEEecCeEEEEEcCCceeeeEeecc-----CCCceeEEEeeCCCeE
Q 015650 156 NKVMIWDDHQSRCIGELSFRSEVRS-VKLRRDRIIVVLEQKIFVYNFADLKLLHQIETI-----ANPKGLCAVSQGVGSL 229 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 229 (403)
+.|.-|+..+++. ..+.....+.+ +.+...+.+++.+..+++++.+++..+..+... ....+...+.+++. +
T Consensus 47 ~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~-~ 124 (307)
T COG3386 47 GRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR-I 124 (307)
T ss_pred CeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC-E
Confidence 7788888765543 34444444444 445566777778999999998766553333211 12334567777764 3
Q ss_pred EEEeeC---------CccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC--C---cEEE
Q 015650 230 VLVCPG---------LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD--G---TLLQ 295 (403)
Q Consensus 230 ~~~~~g---------~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~--~---~~~~ 295 (403)
++...+ ..-|.++.+|......+.+..+-..-+.|+||||++.|+.+-.....|.-|++.. + ....
T Consensus 125 wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~ 204 (307)
T COG3386 125 WFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRG 204 (307)
T ss_pred EEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcce
Confidence 333323 1124444445433445555555666688999999998887766533277777652 1 1111
Q ss_pred EEecCCCcccEEEEEeCCCCCEEEEEeCCC-cEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeE
Q 015650 296 EVRRGADRAEIYSLAFSSNAQWLAVSSDKG-TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA 374 (403)
Q Consensus 296 ~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (403)
.+......+..-.++...+|.+.+++..+| .|.+|+.+ ++. +.
T Consensus 205 ~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l-----------------------------------~~ 248 (307)
T COG3386 205 FVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKL-----------------------------------LG 248 (307)
T ss_pred EEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcE-----------------------------------EE
Confidence 111111345566777888888876555554 89999888 663 44
Q ss_pred EEEEeCCCceEEEe-ccCCCEEEEEcc
Q 015650 375 QFRLVEGSPYIVAF-GHQKNTVVILGM 400 (403)
Q Consensus 375 ~~~~~~~~~~~~~f-s~d~~~l~~~~~ 400 (403)
+++++...+++++| .++.++|++.+.
T Consensus 249 ~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 249 EIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEECCCCCCccceEeCCCcCEEEEEec
Confidence 56676677788888 556777776654
No 316
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.5e-06 Score=75.64 Aligned_cols=208 Identities=13% Similarity=0.146 Sum_probs=143.0
Q ss_pred cceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC---ceeEEEe-cCCceeEEEEecCceEEEe----cCeEEEE
Q 015650 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELS-FRSEVRSVKLRRDRIIVVL----EQKIFVY 199 (403)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~---~~~~~~~-~~~~i~~~~~~~~~~~~~~----d~~i~i~ 199 (403)
|...|+.+.. ....++.+++.| |.++.|--..- +.+..+. |-..|.+++.+-++.+..+ |..++++
T Consensus 8 hrd~i~hv~~-tka~fiiqASlD-----Gh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 8 HRDVITHVFP-TKAKFIIQASLD-----GHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred ccceeeeEee-ehhheEEeeecc-----hhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence 4555554433 334567777777 99999974331 2233333 7788899999999998884 8899999
Q ss_pred EcCCceeeeEeeccCCCceeEEEeeCCC-eEEEEeeCCccCeEEEEEccCCc---eeEEeecCCceEEEEEcCCCCEEEE
Q 015650 200 NFADLKLLHQIETIANPKGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQDGQLLAT 275 (403)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~d~~i~v~d~~~~~---~~~~~~~~~~i~~~~~sp~g~~l~s 275 (403)
|+.+-..+.-++...-+-.+..+...++ .-.++.+...++.+.++|-.... .....-|..+|.++.+++-+..+++
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred EeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence 9987655443333222222223333332 22344445578999999977633 2334569999999999999999999
Q ss_pred EeCCCcEEEEEEcCC------CcEEEEEec-------CCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCC
Q 015650 276 SSTKGTLVRIFNTLD------GTLLQEVRR-------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE 342 (403)
Q Consensus 276 ~~~dg~~i~iwd~~~------~~~~~~~~~-------~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 342 (403)
....|. |.-|..+. .+....++. ........++.|+|+|..+.+-+.|..|+++++.+++..+.++
T Consensus 162 iD~~gm-VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 162 IDISGM-VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred ccccce-eEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 888898 99998762 111111110 0123567899999999999999999999999999999877776
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.48 E-value=9.4e-05 Score=72.60 Aligned_cols=197 Identities=11% Similarity=0.066 Sum_probs=120.3
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650 85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (403)
Q Consensus 85 ~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~ 163 (403)
.+.|.++.|.-++..++.+...| |.+-|..+....... .-..+|.++.|++|...++-.... +++.+-+-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg----~vd~GI~aaswS~Dee~l~liT~~-----~tll~mT~ 138 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG----NVDNGISAASWSPDEELLALITGR-----QTLLFMTK 138 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeee----eccCceEEEeecCCCcEEEEEeCC-----cEEEEEec
Confidence 36899999999988888777555 777676655444322 345788899999886655444332 45544321
Q ss_pred ----CC-------------------CceeEEEe----------------------cCCceeEEEEecCceEEEe------
Q 015650 164 ----HQ-------------------SRCIGELS----------------------FRSEVRSVKLRRDRIIVVL------ 192 (403)
Q Consensus 164 ----~~-------------------~~~~~~~~----------------------~~~~i~~~~~~~~~~~~~~------ 192 (403)
-. |+.-..|. -.+.=..|.|.-||.+++.
T Consensus 139 ~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 139 DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESE 218 (1265)
T ss_pred cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEecc
Confidence 00 11001111 0111234899999988872
Q ss_pred -c-CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE----EeecCCceEEEEE
Q 015650 193 -E-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF----IMAHDSRIACFAL 266 (403)
Q Consensus 193 -d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~----~~~~~~~i~~~~~ 266 (403)
+ ..|++||.+ |.+-..-....+.-.+++|-|.|..+...-.-..++.|.+|.-++-+... +......+..++|
T Consensus 219 ~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 219 TGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAW 297 (1265)
T ss_pred CCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeee
Confidence 5 789999965 54333222333444678888876643322223356689999866633221 2233444899999
Q ss_pred cCCCCEEEE---EeCCCcEEEEEEcCCCc
Q 015650 267 TQDGQLLAT---SSTKGTLVRIFNTLDGT 292 (403)
Q Consensus 267 sp~g~~l~s---~~~dg~~i~iwd~~~~~ 292 (403)
+.++..|+. ...... |++|-+.+..
T Consensus 298 ns~sdiLAv~~~~~e~~~-v~lwt~~Nyh 325 (1265)
T KOG1920|consen 298 NSNSDILAVVTSNLENSL-VQLWTTGNYH 325 (1265)
T ss_pred cCCCCceeeeecccccce-EEEEEecCeE
Confidence 999999987 445555 9999877643
No 318
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.48 E-value=1.6e-05 Score=72.28 Aligned_cols=90 Identities=14% Similarity=0.324 Sum_probs=70.5
Q ss_pred EEEEccCCceeEE----eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCE
Q 015650 242 RVEHYASKRTKFI----MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW 317 (403)
Q Consensus 242 ~v~d~~~~~~~~~----~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~ 317 (403)
.+|+....+++.. ......+.+++++|+...|+.|+.||. |.+||...+... ..+ ..-..+.++|+|+|.+
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~~~t~-~~k---a~~~P~~iaWHp~gai 313 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTRGVTL-LAK---AEFIPTLIAWHPDGAI 313 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe-EEEEEcCCCeee-eee---ecccceEEEEcCCCcE
Confidence 4566555444332 356788999999999999999999999 999998665332 223 3356789999999999
Q ss_pred EEEEeCCCcEEEEEeecCC
Q 015650 318 LAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 318 l~s~~~dg~v~iwd~~~~~ 336 (403)
+++|+..|.+.+||+.-.-
T Consensus 314 ~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 314 FVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCceEEEEEeecCc
Confidence 9999999999999987654
No 319
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.48 E-value=5.6e-06 Score=75.35 Aligned_cols=191 Identities=10% Similarity=0.059 Sum_probs=126.3
Q ss_pred cceeEEEEeeeCCeEEEeeCCCCCCCCC-ceEEEEECCCCceeEEEecCCceeEEEEecCceEEEe----cC--eEEEEE
Q 015650 128 GGIGVVEMLFRCNILALVGGGPDPQYPL-NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL----EQ--KIFVYN 200 (403)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~-~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----d~--~i~i~d 200 (403)
....+..-.|++++..++...-. ... ..+.++++.+++....+.....-...+|+|||+.++. |+ .|+++|
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~--~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFE--LGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred cCcceeccccCcCCCceEEEEEe--cCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEc
Confidence 44455666677765543322110 000 2599999999988777777777778899999998882 33 688899
Q ss_pred cCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCC
Q 015650 201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG 280 (403)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg 280 (403)
+..+.. ..+....+....-.|+|+|+.+++++.....-.|.+++.+.+....+......-..-.|+|||++|+..+..+
T Consensus 269 l~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~ 347 (425)
T COG0823 269 LDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSG 347 (425)
T ss_pred CCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccC
Confidence 887663 3354444444577899999998887633223356667777777666665555444788999999998877432
Q ss_pred c--EEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC
Q 015650 281 T--LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324 (403)
Q Consensus 281 ~--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d 324 (403)
. .|.+.|+.++..++.+. .........|.++|+.+...+..
T Consensus 348 g~~~i~~~~~~~~~~~~~lt---~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 348 GQWDIDKNDLASGGKIRILT---STYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CceeeEEeccCCCCcEEEcc---ccccCCCCCcCCCCceEEEeccC
Confidence 2 16677777666555554 33445567788999887765533
No 320
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.45 E-value=0.00049 Score=63.72 Aligned_cols=244 Identities=13% Similarity=0.099 Sum_probs=134.6
Q ss_pred CeEEEEEcCCCCEEEEEc-CCc-----EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCC------
Q 015650 87 TLLHISFNQDHGCFAAGT-DHG-----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP------ 154 (403)
Q Consensus 87 ~i~~i~~s~d~~~l~~~~-~~~-----i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~------ 154 (403)
.+....++|||++||.+- .+| ++++|+++++.+. ..+. ......+.|.+++..++....+....
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~-d~i~---~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP-DGIE---NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE-EEEE---EEESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC-Cccc---ccccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 344678999999998773 221 9999999886542 2332 11222378888744433322221111
Q ss_pred CceEEEEECCCCcee--EEEe--cCCc-eeEEEEecCceEEE------ec-CeEEEEEcCCc----eeeeEeeccCCCce
Q 015650 155 LNKVMIWDDHQSRCI--GELS--FRSE-VRSVKLRRDRIIVV------LE-QKIFVYNFADL----KLLHQIETIANPKG 218 (403)
Q Consensus 155 ~~~i~iwd~~~~~~~--~~~~--~~~~-i~~~~~~~~~~~~~------~d-~~i~i~d~~~~----~~~~~~~~~~~~~~ 218 (403)
...|+.|.+.+...- ..+. .... ...+..++|+++++ .+ ..+++.|+..+ .....+......+.
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE 280 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence 367899998877432 3444 2222 56888999999877 14 57899998764 23333333333332
Q ss_pred eEEEeeCCCeEEEEe-eCCccCeEEEEEccCCc----eeEEeecCCceEEEEEcCCCCEEEEEeC-CCc-EEEEEEcCCC
Q 015650 219 LCAVSQGVGSLVLVC-PGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQDGQLLATSST-KGT-LVRIFNTLDG 291 (403)
Q Consensus 219 ~~~~~~~~~~~~~~~-~g~~d~~i~v~d~~~~~----~~~~~~~~~~i~~~~~sp~g~~l~s~~~-dg~-~i~iwd~~~~ 291 (403)
...-. .++.+++.+ -+..++.|...++.... ...+..+...+.-..+...+.+|+.... ++. .|+++++..+
T Consensus 281 ~~v~~-~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 281 YYVDH-HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEEEE-ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T
T ss_pred EEEEc-cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC
Confidence 22222 266666665 22345677777877643 2355566654333333345555554443 331 2889998745
Q ss_pred cEEEEEecCCCcccEEEEEeCCCCCEEE--EEe--CCCcEEEEEeecCC
Q 015650 292 TLLQEVRRGADRAEIYSLAFSSNAQWLA--VSS--DKGTVHVFNLKVNS 336 (403)
Q Consensus 292 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~--s~~--~dg~v~iwd~~~~~ 336 (403)
.....+... ..+.|..+...+++..+. ..+ .-++++-||+.+++
T Consensus 360 ~~~~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 360 KESREIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEEEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred cEEeeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 555555543 235577777667666443 222 34578888888887
No 321
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.40 E-value=0.001 Score=60.90 Aligned_cols=218 Identities=16% Similarity=0.182 Sum_probs=116.2
Q ss_pred EEEcCCCCEEEEEcCC------------cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceE
Q 015650 91 ISFNQDHGCFAAGTDH------------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (403)
Q Consensus 91 i~~s~d~~~l~~~~~~------------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i 158 (403)
++.+|.|..+|...+. .|+||+... +.+....+. + ..+..+.|..+...++-.. + |.+
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~--~-~~iv~~~wt~~e~LvvV~~-d-----G~v 103 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWD--S-GRIVGMGWTDDEELVVVQS-D-----GTV 103 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEEC--C-CCEEEEEECCCCeEEEEEc-C-----CEE
Confidence 4555666666655544 488888653 344334443 3 7899999987655554443 3 999
Q ss_pred EEEECCCCceeEEEe----------cCCceeEEEEecCceEEE-ecCeEEEEEcCCce-eeeEeeccCC----------C
Q 015650 159 MIWDDHQSRCIGELS----------FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLK-LLHQIETIAN----------P 216 (403)
Q Consensus 159 ~iwd~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~-~~~~~~~~~~----------~ 216 (403)
+++|+. |+. .+. ....+....+..+|..+. .++.+++.+--... ..+.+..... .
T Consensus 104 ~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~ 180 (410)
T PF04841_consen 104 RVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSW 180 (410)
T ss_pred EEEeCC-Cce--eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCccccccccccc
Confidence 999976 333 222 112223334445676655 45555544322211 1111110000 0
Q ss_pred ceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEE
Q 015650 217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (403)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~ 296 (403)
.....+..+....+++. .++.+.+.+-..- ..+. ..+++..|++||+|++||.-..+|. +.|.+..-.+.+.+
T Consensus 181 ~~i~~l~~~~~~~i~~~---~g~~i~~i~~~~~--~~i~-~~~~i~~iavSpng~~iAl~t~~g~-l~v~ssDf~~~~~e 253 (410)
T PF04841_consen 181 TVIPLLSSDRVVEILLA---NGETIYIIDENSF--KQID-SDGPIIKIAVSPNGKFIALFTDSGN-LWVVSSDFSEKLCE 253 (410)
T ss_pred ccceEeecCcceEEEEe---cCCEEEEEEcccc--cccc-CCCCeEEEEECCCCCEEEEEECCCC-EEEEECcccceeEE
Confidence 00112222222222222 2344443322111 0111 2467999999999999999999999 99988766666666
Q ss_pred EecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (403)
Q Consensus 297 ~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd 331 (403)
+... .......|.|.-+...++.- ...|.+..
T Consensus 254 ~~~~-~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 254 FDTD-SKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred eecC-cCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 6653 23466788887654444333 33455554
No 322
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=9.4e-06 Score=76.34 Aligned_cols=102 Identities=11% Similarity=0.194 Sum_probs=76.8
Q ss_pred EEEcCCCCEEEEEc----CCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC
Q 015650 91 ISFNQDHGCFAAGT----DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ 165 (403)
Q Consensus 91 i~~s~d~~~l~~~~----~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~ 165 (403)
+.|+|...++|+++ .+| |.||- ++++.. +... .+..+.+++|+|....++.+-.. |.+.+|...+
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPq--r~Vt--~P~hatSLCWHpe~~vLa~gwe~-----g~~~v~~~~~ 90 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQ--RDVT--YPVHATSLCWHPEEFVLAQGWEM-----GVSDVQKTNT 90 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCC--cccc--cceehhhhccChHHHHHhhcccc-----ceeEEEecCC
Confidence 57999999998886 333 88884 445433 3332 44567789999999999998887 9999999766
Q ss_pred CceeEEEe-cCCceeEEEEecCceEEEe---cCeEEEEEcC
Q 015650 166 SRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA 202 (403)
Q Consensus 166 ~~~~~~~~-~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~ 202 (403)
.+.-.... |+.+|..+.|+++|..+.+ -|.+.+|...
T Consensus 91 ~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 55444433 9999999999999998883 3578888765
No 323
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.39 E-value=1.2e-05 Score=76.17 Aligned_cols=176 Identities=17% Similarity=0.289 Sum_probs=124.0
Q ss_pred CEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cC
Q 015650 98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FR 175 (403)
Q Consensus 98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~ 175 (403)
..++.|+ .+.+..+|+.+.+......+. ...+.-+.. ++..+.+|... |+|.+-|.++.+.+.++. |.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~---a~~v~imR~--Nnr~lf~G~t~-----G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVS---ASGVTIMRY--NNRNLFCGDTR-----GTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeecc---CCceEEEEe--cCcEEEeeccc-----ceEEeecCCcCceeeeeeccc
Confidence 3444444 455777788776665333332 223444433 55677777777 999999999999999999 99
Q ss_pred CceeEEEEecCceEEE----------ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEE
Q 015650 176 SEVRSVKLRRDRIIVV----------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH 245 (403)
Q Consensus 176 ~~i~~~~~~~~~~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d 245 (403)
+.|.++....+-.+.+ .|.-|++||++..+.+.-+..+.++ ..+.|.|.=...++++ +..|...+-|
T Consensus 218 ~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~--S~sGq~q~vd 294 (1118)
T KOG1275|consen 218 GSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVT--SQSGQFQFVD 294 (1118)
T ss_pred cceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEE--ecccceeecc
Confidence 9998877654432222 4778999999998877766655555 6677777655555554 3568888888
Q ss_pred ---ccCCc--eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEE
Q 015650 246 ---YASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (403)
Q Consensus 246 ---~~~~~--~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd 287 (403)
+.+.. ...+......+..+.++++|..|+.|..+|. |.+|.
T Consensus 295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCc-Eeeec
Confidence 33332 3334445566999999999999999999999 99996
No 324
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.38 E-value=0.00097 Score=59.36 Aligned_cols=173 Identities=14% Similarity=0.153 Sum_probs=107.3
Q ss_pred ceEEEEECCCCceeEEEe--cCCceeEEEE---ecC----ceEEE--e----------c-CeEEEEEcCCc----eeeeE
Q 015650 156 NKVMIWDDHQSRCIGELS--FRSEVRSVKL---RRD----RIIVV--L----------E-QKIFVYNFADL----KLLHQ 209 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~--~~~~i~~~~~---~~~----~~~~~--~----------d-~~i~i~d~~~~----~~~~~ 209 (403)
..|++.|..+.+.+..+. ..+.+.+++. ..+ ..+++ + . |.|.+|++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 478999988888887776 3445555543 322 34544 1 2 88999999883 22332
Q ss_pred e--eccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015650 210 I--ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF 286 (403)
Q Consensus 210 ~--~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iw 286 (403)
+ ....+++..++.- ++. ++++ .++.|.+|++.... +.....+...+........+++|+.|..... |.++
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~---~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~s-v~~~ 154 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVA---VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKS-VSLL 154 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEE---ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSS-EEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEe---ecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccC-EEEE
Confidence 2 1234555544443 444 4444 34899999999877 6555444443333444445679999988777 8877
Q ss_pred EcCC-CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650 287 NTLD-GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (403)
Q Consensus 287 d~~~-~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~ 335 (403)
.... ...+..+........++++.|-+|++.++.+..+|.|.++..+..
T Consensus 155 ~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 155 RYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp EEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred EEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 5443 333444444334567899999877789999999999999999743
No 325
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.38 E-value=0.0014 Score=57.89 Aligned_cols=219 Identities=11% Similarity=-0.031 Sum_probs=107.9
Q ss_pred EEcCCCCEEEEEc--CCc--EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650 92 SFNQDHGCFAAGT--DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (403)
Q Consensus 92 ~~s~d~~~l~~~~--~~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~ 167 (403)
+|.+||+.|+.++ ++. +.+.|+++++....... ..........+++...++-.... ..|+-.|+.+.+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg---~g~~~~g~~~s~~~~~~~Yv~~~-----~~l~~vdL~T~e 113 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDG---PGDNTFGGFLSPDDRALYYVKNG-----RSLRRVDLDTLE 113 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---S---S-B-TTT-EE-TTSSEEEEEETT-----TEEEEEETTT--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccC---CCCCccceEEecCCCeEEEEECC-----CeEEEEECCcCc
Confidence 5778997776655 333 77778877665432222 11111122333443333222111 578888999987
Q ss_pred eeEEEe-cCCceeEEEE--ecCceEEEe-------------------------cCeEEEEEcCCceeeeEeeccCCCcee
Q 015650 168 CIGELS-FRSEVRSVKL--RRDRIIVVL-------------------------EQKIFVYNFADLKLLHQIETIANPKGL 219 (403)
Q Consensus 168 ~~~~~~-~~~~i~~~~~--~~~~~~~~~-------------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~ 219 (403)
....+. ...-+-...| +.|+..++. ...|...|+.+|+....+. ....+..
T Consensus 114 ~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH 192 (386)
T PF14583_consen 114 ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGH 192 (386)
T ss_dssp EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEE
T ss_pred EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccC
Confidence 766666 3333333444 345666551 2367788888887655443 4677788
Q ss_pred EEEeeCCCeEEEEe-eCCccCe-EEEEEccC--CceeEEeecC--CceEEEEEcCCCCEEEEEeC-----CCcEEEEEEc
Q 015650 220 CAVSQGVGSLVLVC-PGLQKGQ-VRVEHYAS--KRTKFIMAHD--SRIACFALTQDGQLLATSST-----KGTLVRIFNT 288 (403)
Q Consensus 220 ~~~~~~~~~~~~~~-~g~~d~~-i~v~d~~~--~~~~~~~~~~--~~i~~~~~sp~g~~l~s~~~-----dg~~i~iwd~ 288 (403)
+.++|....+++.| -|..+.. -+||-++. .....+..+. ..+..=-|.|||..|..-+. +.. |.-+|.
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~-i~~~d~ 271 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW-IAGYDP 271 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE-EEEE-T
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE-EEeeCC
Confidence 99999888877776 2323332 35665544 4444443332 23444568999988765332 334 677788
Q ss_pred CCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC
Q 015650 289 LDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324 (403)
Q Consensus 289 ~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d 324 (403)
.+++....... .....+--++||++++-=+.|
T Consensus 272 ~t~~~~~~~~~----p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 272 DTGERRRLMEM----PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCceEEEeC----CceeeeEEcCCCCEEEecCCC
Confidence 88876543332 245567778999988654443
No 326
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=1.4e-06 Score=82.09 Aligned_cols=238 Identities=8% Similarity=0.136 Sum_probs=147.2
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCC-----
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ----- 152 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~----- 152 (403)
+.++.|...-+|++|+-+.+.|++|.-.| |++|++.++... .... .|...++-+..+.++....+.+.-..
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e--~s~n-cH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME--ESVN-CHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc--cccc-ccccccccccccCCcceeeeeccccCchHHH
Confidence 66788999999999999999999999555 999999887655 3443 57777777666665544333221100
Q ss_pred --------------------CC-----------CceEEEEECCCCceeEEEe-----cCCceeEEEEecCceEEEecCeE
Q 015650 153 --------------------YP-----------LNKVMIWDDHQSRCIGELS-----FRSEVRSVKLRRDRIIVVLEQKI 196 (403)
Q Consensus 153 --------------------~~-----------~~~i~iwd~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~d~~i 196 (403)
|+ .....+||+.++..+.++- ....-....|+|+..++..||-
T Consensus 1172 W~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGv- 1250 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGV- 1250 (1516)
T ss_pred hccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCce-
Confidence 00 0346677777776555522 1222356778888888888875
Q ss_pred EEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEEE
Q 015650 197 FVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLAT 275 (403)
Q Consensus 197 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~s 275 (403)
+||.+..+.++.|.... ....-.|+|++..+++-+ .|||+++-++ .....- .-..+.|+..|..++.
T Consensus 1251 -LWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS--------EIwD~RTF~lLh~VP~L--dqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1251 -LWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS--------EIWDMRTFKLLHSVPSL--DQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred -eeeeccHHHHhhhhhhe-ecccccccCCCceEEeec--------hhhhhHHHHHHhcCccc--cceEEEeccCccchhh
Confidence 68888777776665433 222345778777655432 4788887332 211111 1234667777766553
Q ss_pred EeC-----C------------CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC---------CcEEE
Q 015650 276 SST-----K------------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK---------GTVHV 329 (403)
Q Consensus 276 ~~~-----d------------g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d---------g~v~i 329 (403)
.-. + .. .+-||..+-..+.++.. ...|..++-+|...+|.+.-.. -..++
T Consensus 1319 ~~~~~d~~sdvh~~r~k~p~fSS-FRTf~a~dYs~iaTi~v---~R~~~Dlct~~~D~~l~vIe~~~~~d~dq~sT~~r~ 1394 (1516)
T KOG1832|consen 1319 MLNIEDVMSDVHTRRVKHPLFSS-FRTFDAIDYSDIATIPV---DRCLLDLCTEPTDSFLGVIEMEDQEDMDQFSTSARM 1394 (1516)
T ss_pred hhhhhhhhhhhcccccccchhhh-hccccccccccceeeec---ccchhhhhcCCccceEEEEeccChhhhhhhhhhhhh
Confidence 320 0 11 45566666677777774 3578888888888888766432 25677
Q ss_pred EEeecCC
Q 015650 330 FNLKVNS 336 (403)
Q Consensus 330 wd~~~~~ 336 (403)
|.+-..+
T Consensus 1395 yEIGR~r 1401 (1516)
T KOG1832|consen 1395 YEIGRRR 1401 (1516)
T ss_pred hhhcccC
Confidence 7664433
No 327
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.35 E-value=0.0017 Score=57.79 Aligned_cols=215 Identities=13% Similarity=0.217 Sum_probs=122.6
Q ss_pred cEEEEEcCCCeeEEEEecccCcceeEEEEe---eeCC----eEEEe-eCCCCC---CCCC-ceEEEEECCCC-----c--
Q 015650 107 GFRIYNCDPFREIFRRDFERGGGIGVVEML---FRCN----ILALV-GGGPDP---QYPL-NKVMIWDDHQS-----R-- 167 (403)
Q Consensus 107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~----~~~~~-s~~~d~---~~~~-~~i~iwd~~~~-----~-- 167 (403)
.|++.|..+.+.+....+. ....+.++. +..+ ..+++ +.+... ..+. |.|.++++... +
T Consensus 3 ~i~l~d~~~~~~~~~~~l~--~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELE--PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp EEEEEETTTSSEEEEEEEE--TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred EEEEEeCCCCeEEEEEECC--CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 3788887777766556665 344444333 3321 23333 222110 0112 89999999884 2
Q ss_pred eeEEEecCCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEc
Q 015650 168 CIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY 246 (403)
Q Consensus 168 ~~~~~~~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~ 246 (403)
.+......++|.+++--.+. +++ .++.|++|++...+.+..............+...++.+++ |+....+.++.+
T Consensus 81 ~i~~~~~~g~V~ai~~~~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~v---gD~~~sv~~~~~ 156 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSFNGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILV---GDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEEESS-EEEEEEETTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEE---EESSSSEEEEEE
T ss_pred EEEEEeecCcceEhhhhCCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEE---EEcccCEEEEEE
Confidence 22333378999999888554 444 7999999999887723333333444466666666664333 335566776654
Q ss_pred cC--CceeEEe--ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC-------Cc----EEEEEecCCCcccEEEE--
Q 015650 247 AS--KRTKFIM--AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD-------GT----LLQEVRRGADRAEIYSL-- 309 (403)
Q Consensus 247 ~~--~~~~~~~--~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~-------~~----~~~~~~~~~~~~~v~~l-- 309 (403)
+. ..+..+. .....++++.|-++++.++.+..+|. |.++.... +. ....+. ....|+++
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn-l~~l~~~~~~~~~~~~~~~L~~~~~f~---lg~~v~~~~~ 232 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN-LFVLRYNPEIPNSRDGDPKLERISSFH---LGDIVNSFRR 232 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE-EEEEEE-SS-SSTTTTTTBEEEEEEEE----SS-EEEEEE
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe-EEEEEECCCCcccccccccceeEEEEE---CCCccceEEE
Confidence 43 3343333 23556888888877778889999999 99987752 22 223333 33567777
Q ss_pred -EeCCC--CC------EEEEEeCCCcEEEEE
Q 015650 310 -AFSSN--AQ------WLAVSSDKGTVHVFN 331 (403)
Q Consensus 310 -~~s~d--~~------~l~s~~~dg~v~iwd 331 (403)
.+.|. +. .++.++.+|.|...-
T Consensus 233 ~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 233 GSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp --SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred EEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 65552 22 477888999988443
No 328
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.32 E-value=0.00048 Score=62.12 Aligned_cols=229 Identities=12% Similarity=0.084 Sum_probs=120.5
Q ss_pred cCCCCEEEEEc----------CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650 94 NQDHGCFAAGT----------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (403)
Q Consensus 94 s~d~~~l~~~~----------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~ 163 (403)
|||+++++... .+.+.|||+++++.. .+. .....+....|+|++..++-... +.|.+++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~---~l~-~~~~~~~~~~~sP~g~~~~~v~~------~nly~~~~ 70 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT---PLT-PPPPKLQDAKWSPDGKYIAFVRD------NNLYLRDL 70 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE---ESS--EETTBSEEEE-SSSTEEEEEET------TEEEEESS
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE---ECc-CCccccccceeecCCCeeEEEec------CceEEEEC
Confidence 68898887743 233889999886543 232 12456677788888777666544 78999998
Q ss_pred CCCceeEEEe-c-----------------CCceeEEEEecCceEEEe----cC---------------------------
Q 015650 164 HQSRCIGELS-F-----------------RSEVRSVKLRRDRIIVVL----EQ--------------------------- 194 (403)
Q Consensus 164 ~~~~~~~~~~-~-----------------~~~i~~~~~~~~~~~~~~----d~--------------------------- 194 (403)
.+++..+.-. . -..-..+-|+||++.++. +.
T Consensus 71 ~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk 150 (353)
T PF00930_consen 71 ATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPK 150 (353)
T ss_dssp TTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--B
T ss_pred CCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCC
Confidence 7774333221 1 112356889999988771 11
Q ss_pred --------eEEEEEcCCceeeeE-ee----ccCCCceeEEEeeCCCeEEEEeeCCc--cCeEEEEEccCCceeEE--eec
Q 015650 195 --------KIFVYNFADLKLLHQ-IE----TIANPKGLCAVSQGVGSLVLVCPGLQ--KGQVRVEHYASKRTKFI--MAH 257 (403)
Q Consensus 195 --------~i~i~d~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~g~~--d~~i~v~d~~~~~~~~~--~~~ 257 (403)
.+.++|+.+++.... .. ....-+..+.|.++++.+++...... ...+.++|..++....+ ...
T Consensus 151 ~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~ 230 (353)
T PF00930_consen 151 AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS 230 (353)
T ss_dssp TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES
T ss_pred CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecC
Confidence 234455544433211 01 11122344677777664555443322 23455567766544332 223
Q ss_pred CCce---EEEEEc-CCCCE-EEEEeCCCc-EEEEEEcCCCcEEEEEecCCCcccEEE-EEeCCCCCEEE-EEeC--CCcE
Q 015650 258 DSRI---ACFALT-QDGQL-LATSSTKGT-LVRIFNTLDGTLLQEVRRGADRAEIYS-LAFSSNAQWLA-VSSD--KGTV 327 (403)
Q Consensus 258 ~~~i---~~~~~s-p~g~~-l~s~~~dg~-~i~iwd~~~~~~~~~~~~~~~~~~v~~-l~~s~d~~~l~-s~~~--dg~v 327 (403)
...| ..+.|. +++.. |.....+|- .|.+++...+.. +.+.. ..-.|.. +.|+++++.|. ++.. -+.-
T Consensus 231 ~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~--G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r 307 (353)
T PF00930_consen 231 DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTS--GDWEVTSILGWDEDNNRIYFTANGDNPGER 307 (353)
T ss_dssp SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS---SSS-EEEEEEEECTSSEEEEEESSGGTTSB
T ss_pred CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-ecccc--CceeecccceEcCCCCEEEEEecCCCCCce
Confidence 3333 255554 55554 444556664 266667655553 34443 2345644 77888887665 4443 2345
Q ss_pred EEEEeecC
Q 015650 328 HVFNLKVN 335 (403)
Q Consensus 328 ~iwd~~~~ 335 (403)
+||.+.-.
T Consensus 308 ~lY~v~~~ 315 (353)
T PF00930_consen 308 HLYRVSLD 315 (353)
T ss_dssp EEEEEETT
T ss_pred EEEEEEeC
Confidence 55555544
No 329
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.30 E-value=4.1e-06 Score=77.45 Aligned_cols=201 Identities=14% Similarity=0.131 Sum_probs=127.9
Q ss_pred cccCCCCCCeEEEEEcCCC-CEEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCC
Q 015650 79 STSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPL 155 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~-~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~ 155 (403)
-.+.+|..+|+.+.|+|.. ..+++++ |..+..||+..-...+.... .-......+.|+-. ...+++...
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~--~w~s~asqVkwnyk~p~vlasshg------ 179 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS--SWRSAASQVKWNYKDPNVLASSHG------ 179 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee--cccccCceeeecccCcchhhhccC------
Confidence 4578999999999999876 4678887 55599999976544332222 23334455666543 334444433
Q ss_pred ceEEEEECCCC-ceeEEEe-cCCceeEEEEecC--ceEEE--ecCeEEEEEcCCc--eeeeEeeccCCCceeEEEeeCCC
Q 015650 156 NKVMIWDDHQS-RCIGELS-FRSEVRSVKLRRD--RIIVV--LEQKIFVYNFADL--KLLHQIETIANPKGLCAVSQGVG 227 (403)
Q Consensus 156 ~~i~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~--~~~~~--~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 227 (403)
+.|.+||.+.| .++..++ |...|..+.|+.- +..+. .|++|+.||.... +..+.+ ....++..-++.|-++
T Consensus 180 ~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-tt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV-TTNFPIWRGRYLPFGE 258 (1081)
T ss_pred CceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec-cccCcceeccccccCc
Confidence 68999999877 5666777 7778888888763 33333 5999999997653 222222 2234555556667666
Q ss_pred eEEEEeeCCccCeEEEEEccC-----------CceeEEeecCCceEEEEEcCC----------CCEEEEEeCCCcEEEEE
Q 015650 228 SLVLVCPGLQKGQVRVEHYAS-----------KRTKFIMAHDSRIACFALTQD----------GQLLATSSTKGTLVRIF 286 (403)
Q Consensus 228 ~~~~~~~g~~d~~i~v~d~~~-----------~~~~~~~~~~~~i~~~~~sp~----------g~~l~s~~~dg~~i~iw 286 (403)
+.++.-.- .+..+.+++-+. ..+..+.+|...|....|-.. .-.|++=+.|.. +++|
T Consensus 259 g~~~mp~~-G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~-lrlW 336 (1081)
T KOG0309|consen 259 GYCIMPMV-GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT-LRLW 336 (1081)
T ss_pred eeEecccc-CCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc-eEee
Confidence 65544311 122344443332 346778899888766655432 226889999999 9999
Q ss_pred EcCC
Q 015650 287 NTLD 290 (403)
Q Consensus 287 d~~~ 290 (403)
-+.+
T Consensus 337 pI~~ 340 (1081)
T KOG0309|consen 337 PIDS 340 (1081)
T ss_pred eccH
Confidence 8753
No 330
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.0034 Score=57.14 Aligned_cols=241 Identities=14% Similarity=0.109 Sum_probs=158.3
Q ss_pred CeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeE-EEeeCCCCCCCCCceEEEEEC
Q 015650 87 TLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDD 163 (403)
Q Consensus 87 ~i~~i~~s~d~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~i~iwd~ 163 (403)
....+.+.+++..+.... .+.+.+.+.. ......... .....-..+..++.+. ..+....+ +.|.+.|.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~--~n~~~~~~~-~g~~~p~~i~v~~~~~~vyv~~~~~-----~~v~vid~ 103 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT--SNTVTQSLS-VGGVYPAGVAVNPAGNKVYVTTGDS-----NTVSVIDT 103 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc--cceeeeecc-CCCccccceeeCCCCCeEEEecCCC-----CeEEEEcC
Confidence 455677888885554443 2224444433 111112121 1112233444444443 44444444 79999998
Q ss_pred CCCceeEEEecCCceeEEEEecCceEEE---e---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650 164 HQSRCIGELSFRSEVRSVKLRRDRIIVV---L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (403)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 237 (403)
.+.+......-......+++++++..+. . ++++.+.|-.+.+.+........+ ..+++.|++...+++. ..
T Consensus 104 ~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~--~~ 180 (381)
T COG3391 104 ATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN--SD 180 (381)
T ss_pred cccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe--cC
Confidence 8888777777555778899999986555 2 578999998888888776554445 7889999999877765 46
Q ss_pred cCeEEEEEccCCceeE-----EeecCCceEEEEEcCCCCEEEEEeCC---CcEEEEEEcCCCcEEEEEecCCCcccEEEE
Q 015650 238 KGQVRVEHYASKRTKF-----IMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIYSL 309 (403)
Q Consensus 238 d~~i~v~d~~~~~~~~-----~~~~~~~i~~~~~sp~g~~l~s~~~d---g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l 309 (403)
++.|.+.|.....+.. ...-......+.++|+|.+++..... +. +.+.|..++............ ....+
T Consensus 181 ~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~-v~~id~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 181 DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN-VLKIDTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce-EEEEeCCCceEEEeccccccC-CCCce
Confidence 8899999977765553 11222334678899999977665544 47 999999888877652221122 45678
Q ss_pred EeCCCCCEEEEEe-CCCcEEEEEeecCCCCCC
Q 015650 310 AFSSNAQWLAVSS-DKGTVHVFNLKVNSGSAR 340 (403)
Q Consensus 310 ~~s~d~~~l~s~~-~dg~v~iwd~~~~~~~~~ 340 (403)
..+|+|+.+.+.. ..+.+.+-|..+......
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 9999999988874 458899999888775444
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.00047 Score=65.49 Aligned_cols=201 Identities=15% Similarity=0.167 Sum_probs=126.4
Q ss_pred CeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeC-CeEEEeeCCCCCCCCCceEEEEECC
Q 015650 87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDH 164 (403)
Q Consensus 87 ~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~i~iwd~~ 164 (403)
.|+| |++.+..++.|+..| |.+.+- . ....+.+. .+...+....+.- +..++++.+.|..-.+-.++||+++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~--s-~~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS--S-FQLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc--c-ceeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 5555 678888999998444 766652 2 22224444 3334444444444 4366666665522111279999986
Q ss_pred CC------cee---EEEe-----cCCceeEEEEecCceEEE---ecCeEEEEEcC----CceeeeEeeccCCCceeEEEe
Q 015650 165 QS------RCI---GELS-----FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA----DLKLLHQIETIANPKGLCAVS 223 (403)
Q Consensus 165 ~~------~~~---~~~~-----~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~----~~~~~~~~~~~~~~~~~~~~~ 223 (403)
.- +++ +.+. ...++..++.+.+-..++ .+|.|..+.=. .+...........+|+.+++.
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR 180 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence 43 233 2222 245688899998876666 58998888521 122222233456789999999
Q ss_pred eCCCeEEEEeeCCccCeEEEEEccCCc--eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 015650 224 QGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR 298 (403)
Q Consensus 224 ~~~~~~~~~~~g~~d~~i~v~d~~~~~--~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~ 298 (403)
.++...++++ .-..|.+|.+.++. ...+..|+..+.|-.|++....+++++... |.+||.....+-..+.
T Consensus 181 ~d~~s~lFv~---Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~--l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 181 SDGKSVLFVA---TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEF--LYFYDSDGRGPCFAFE 252 (933)
T ss_pred cCCceeEEEE---ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCce--EEEEcCCCcceeeeec
Confidence 9988754554 34689999988755 455778888999999987665466665554 9999987555555555
No 332
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=6.8e-07 Score=84.12 Aligned_cols=194 Identities=9% Similarity=0.064 Sum_probs=139.4
Q ss_pred EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEEe-----cCe
Q 015650 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL-----EQK 195 (403)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~-----d~~ 195 (403)
+.+. .+....++++|+.+...++.|.-. |.|+++++.+|....... |..+|+.+.-+.||..... .--
T Consensus 1095 ~~fr-d~~~~fTc~afs~~~~hL~vG~~~-----Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1095 RSFR-DETALFTCIAFSGGTNHLAVGSHA-----GEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hhhh-ccccceeeEEeecCCceEEeeecc-----ceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence 3444 677889999999998888888877 999999999999888888 9999999999999887762 224
Q ss_pred EEEEEcCC-ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-eE-Ee---ecCCceEEEEEcCC
Q 015650 196 IFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KF-IM---AHDSRIACFALTQD 269 (403)
Q Consensus 196 i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~-~~---~~~~~i~~~~~sp~ 269 (403)
..+|++.. +...+.+.. -.++.|+......++.+ ......+||+.+... .+ +. +....-++..|+|+
T Consensus 1169 saLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt---~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGT---EADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred HHHhccccccCccccccc----cceeehhhhHHHHHhcc---cccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence 66899764 555555543 24566666544434443 446789999998442 22 21 22223477899999
Q ss_pred CCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCC
Q 015650 270 GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE 342 (403)
Q Consensus 270 g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 342 (403)
..+++ +||. +||++..+.++.|..- . .-..=.|+|.|..++.-+ -|||+++.+..+...
T Consensus 1242 D~LIl---ndGv---LWDvR~~~aIh~FD~f--t-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1242 DTLIL---NDGV---LWDVRIPEAIHRFDQF--T-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVP 1300 (1516)
T ss_pred cceEe---eCce---eeeeccHHHHhhhhhh--e-ecccccccCCCceEEeec-----hhhhhHHHHHHhcCc
Confidence 98775 6775 9999988888777641 1 222346999999888765 489999988766554
No 333
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.19 E-value=0.0017 Score=56.62 Aligned_cols=211 Identities=15% Similarity=0.075 Sum_probs=130.4
Q ss_pred EEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEEecccCcceeEEEEee-eCCeEEEeeCCCCCCCCCceEEEEECCCCce
Q 015650 92 SFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMIWDDHQSRC 168 (403)
Q Consensus 92 ~~s~d~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~ 168 (403)
.|.++...|.-.. .+.|.-|+..+++.. .+. ....+.+... ...+.++++ . .-+.+++.+++..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~---~~~--~p~~~~~~~~~d~~g~Lv~~-~-------~g~~~~~~~~~~~ 97 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR---VFP--SPGGFSSGALIDAGGRLIAC-E-------HGVRLLDPDTGGK 97 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE---EEE--CCCCcccceeecCCCeEEEE-c-------cccEEEeccCCce
Confidence 5777877666665 333777777644332 222 2233344433 344444444 3 3477888776665
Q ss_pred eEEEe------cCCceeEEEEecCceEEEec--------------CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650 169 IGELS------FRSEVRSVKLRRDRIIVVLE--------------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (403)
Q Consensus 169 ~~~~~------~~~~i~~~~~~~~~~~~~~d--------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (403)
+..+. .....+.+...|+|.+.+.+ |.|+.+|. .+..++.+..+-..-+.++|+|+++.
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~t 176 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKT 176 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCE
Confidence 43332 23456788899999888832 23555554 45555555443444467999999998
Q ss_pred EEEEeeCCccCeEEEEEccC------Cc--eeEEeecCCceEEEEEcCCCCEEEEEeCCC-cEEEEEEcCCCcEEEEEec
Q 015650 229 LVLVCPGLQKGQVRVEHYAS------KR--TKFIMAHDSRIACFALTQDGQLLATSSTKG-TLVRIFNTLDGTLLQEVRR 299 (403)
Q Consensus 229 ~~~~~~g~~d~~i~v~d~~~------~~--~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg-~~i~iwd~~~~~~~~~~~~ 299 (403)
+|++= +..+.|.-|++.. ++ ........+..-.++...+|.+.+++...| . |.+|+.. ++++..+..
T Consensus 177 ly~aD--T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~-v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 177 LYVAD--TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGR-VVRFNPD-GKLLGEIKL 252 (307)
T ss_pred EEEEe--CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCce-EEEECCC-CcEEEEEEC
Confidence 87764 3457888887762 11 112223456667888888998876555554 6 9999976 999999986
Q ss_pred CCCcccEEEEEeC-CCCCEEEEEe
Q 015650 300 GADRAEIYSLAFS-SNAQWLAVSS 322 (403)
Q Consensus 300 ~~~~~~v~~l~~s-~d~~~l~s~~ 322 (403)
.. ..+++++|- ++.+.|.+.+
T Consensus 253 P~--~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 253 PV--KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CC--CCCccceEeCCCcCEEEEEe
Confidence 42 677888885 4556555444
No 334
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.19 E-value=0.0011 Score=64.43 Aligned_cols=127 Identities=16% Similarity=0.209 Sum_probs=84.1
Q ss_pred ceEEEEECCCCceeEEEe-cC-CceeEEEEe-------cCceEEE-ecCeEEEEEcCCce--eeeE-eec--cCCCceeE
Q 015650 156 NKVMIWDDHQSRCIGELS-FR-SEVRSVKLR-------RDRIIVV-LEQKIFVYNFADLK--LLHQ-IET--IANPKGLC 220 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~-~~-~~i~~~~~~-------~~~~~~~-~d~~i~i~d~~~~~--~~~~-~~~--~~~~~~~~ 220 (403)
..|+-.|++.|+.+..+. +. .+|..++-. +...++. .++.+..||.+-.. ++.. ... ......++
T Consensus 504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~ 583 (794)
T PF08553_consen 504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF 583 (794)
T ss_pred CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE
Confidence 789999999999999998 33 235554332 3344555 68899999988532 2211 111 12233444
Q ss_pred EEeeCCCeEEEEeeCCccCeEEEEEccCCce-eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEc
Q 015650 221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (403)
Q Consensus 221 ~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~ 288 (403)
+-+.+| . +|. |+.+|.||+||--+.+- ..+.+-..+|..|..+.||++|++.|.. . |.|++.
T Consensus 584 aTt~~G--~-iav-gs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-y-LlLi~t 646 (794)
T PF08553_consen 584 ATTEDG--Y-IAV-GSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-Y-LLLIDT 646 (794)
T ss_pred EecCCc--e-EEE-EeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-e-EEEEEE
Confidence 444444 2 443 56899999999554333 3456778999999999999999876654 4 777775
No 335
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.17 E-value=0.00069 Score=61.95 Aligned_cols=115 Identities=17% Similarity=0.245 Sum_probs=78.7
Q ss_pred ecCCceeEEEEecCc--eEEE------ecC----eEEEEEcCCcee--eeEee-ccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650 173 SFRSEVRSVKLRRDR--IIVV------LEQ----KIFVYNFADLKL--LHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQ 237 (403)
Q Consensus 173 ~~~~~i~~~~~~~~~--~~~~------~d~----~i~i~d~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~ 237 (403)
..+....++.|+... .+.. .+| .-.+|++...+. +.... .....+.+++++|+.+.+++.| .
T Consensus 203 rTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC---~ 279 (545)
T PF11768_consen 203 RTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGC---E 279 (545)
T ss_pred EecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEe---c
Confidence 345556677777532 2222 133 244666654432 21111 2456788999999998877665 9
Q ss_pred cCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc
Q 015650 238 KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292 (403)
Q Consensus 238 d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~ 292 (403)
||.|.+||...+..... ...-..+.++|+|+|.++++|+..|. |.+||+.-..
T Consensus 280 DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~ALsp 332 (545)
T PF11768_consen 280 DGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMALSP 332 (545)
T ss_pred CCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCce-EEEEEeecCc
Confidence 99999999887654444 34566789999999999999999999 9999986543
No 336
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.16 E-value=0.0044 Score=58.53 Aligned_cols=229 Identities=12% Similarity=0.085 Sum_probs=127.6
Q ss_pred CEEEEEc-CCcEEEEEcCCCeeEEEEecccCcc---eeEE-EEeeeCCeEEEeeCC--------CCCCCCCceEEEEECC
Q 015650 98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGG---IGVV-EMLFRCNILALVGGG--------PDPQYPLNKVMIWDDH 164 (403)
Q Consensus 98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~---~~v~-~~~~~~~~~~~~s~~--------~d~~~~~~~i~iwd~~ 164 (403)
..++.++ ++.|..+|.++++.+....+. .+. ..+. ...+.. +.+++... .+ +.+.-+|..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~-~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~-----g~v~alD~~ 183 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNN-DQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVR-----GALRAYDVE 183 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCC-CCcCcceEecCCCEEEC-CEEEEeccccccccCCCC-----cEEEEEECC
Confidence 4455554 555899999998888766554 211 0011 111222 33334321 23 789999999
Q ss_pred CCceeEEEecC-Cc--------------------e-eEEEEec-CceEEE--ecC------------------eEEEEEc
Q 015650 165 QSRCIGELSFR-SE--------------------V-RSVKLRR-DRIIVV--LEQ------------------KIFVYNF 201 (403)
Q Consensus 165 ~~~~~~~~~~~-~~--------------------i-~~~~~~~-~~~~~~--~d~------------------~i~i~d~ 201 (403)
+|+.+-.++.. .. + ....+.+ .+.+++ .++ .|..+|+
T Consensus 184 TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~ 263 (488)
T cd00216 184 TGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDA 263 (488)
T ss_pred CCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcC
Confidence 99988877621 10 0 1233333 344444 233 7999999
Q ss_pred CCceeeeEeeccCCCc------eeEEEe----eCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCC
Q 015650 202 ADLKLLHQIETIANPK------GLCAVS----QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQ 271 (403)
Q Consensus 202 ~~~~~~~~~~~~~~~~------~~~~~~----~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~ 271 (403)
++|+.+..++...... ....+. -++....++..+..+|.+...|.++++..-..... ...++.+| .
T Consensus 264 ~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~ 339 (488)
T cd00216 264 DTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP--G 339 (488)
T ss_pred CCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC--c
Confidence 9999988875322211 111111 12332223333557899999999987754322111 11233344 2
Q ss_pred EEEEE------------------eCCCcEEEEEEcCCCcEEEEEecCCCc------ccE--EEEEeCCCCCEEEEEeCCC
Q 015650 272 LLATS------------------STKGTLVRIFNTLDGTLLQEVRRGADR------AEI--YSLAFSSNAQWLAVSSDKG 325 (403)
Q Consensus 272 ~l~s~------------------~~dg~~i~iwd~~~~~~~~~~~~~~~~------~~v--~~l~~s~d~~~l~s~~~dg 325 (403)
.++.+ ..+|. |.-.|+.+|+.+-+.....+. ... ..+.. .+..|++++.||
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~-l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG 416 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGG-LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADG 416 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceE-EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCC
Confidence 23322 23566 888888888877666532111 111 11222 557888889999
Q ss_pred cEEEEEeecCCCCCC
Q 015650 326 TVHVFNLKVNSGSAR 340 (403)
Q Consensus 326 ~v~iwd~~~~~~~~~ 340 (403)
.|+.+|.++++..-+
T Consensus 417 ~l~ald~~tG~~lW~ 431 (488)
T cd00216 417 YFRAFDATTGKELWK 431 (488)
T ss_pred eEEEEECCCCceeeE
Confidence 999999999986443
No 337
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=0.00025 Score=61.37 Aligned_cols=244 Identities=9% Similarity=0.068 Sum_probs=129.2
Q ss_pred ccccCCCCCCeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-eEEEeeCCCCCCCC
Q 015650 78 ESTSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYP 154 (403)
Q Consensus 78 ~~~~~~~~~~i~~i~~s~d~~-~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~ 154 (403)
..++.+|...|..++|+|..+ ++..++ ++.|+|.|+++.... ..+. ....+++++|.-+ ..++..|...
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v--ssy~--a~~~~wSC~wDlde~h~IYaGl~n---- 257 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV--SSYI--AYNQIWSCCWDLDERHVIYAGLQN---- 257 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceee--ehee--ccCCceeeeeccCCcceeEEeccC----
Confidence 347788899999999999887 566666 777999999887655 3443 2377888888765 4567777777
Q ss_pred CceEEEEECCCCce-eEEEe---cCCceeEEEEe------cCceEEE-ecCeEEEEEcCC--ceeeeEeecc-CCCceeE
Q 015650 155 LNKVMIWDDHQSRC-IGELS---FRSEVRSVKLR------RDRIIVV-LEQKIFVYNFAD--LKLLHQIETI-ANPKGLC 220 (403)
Q Consensus 155 ~~~i~iwd~~~~~~-~~~~~---~~~~i~~~~~~------~~~~~~~-~d~~i~i~d~~~--~~~~~~~~~~-~~~~~~~ 220 (403)
|.|.|||++..+- +..+. ...+|..++.- +-+.+++ .---+..|++.- +.....++.. .+....+
T Consensus 258 -G~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cism 336 (463)
T KOG1645|consen 258 -GMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISM 336 (463)
T ss_pred -ceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeee
Confidence 9999999976532 22222 23344433322 2223333 222334444322 1111111111 1222222
Q ss_pred EEeeCCCeEEEEeeCC-c---cCeEEEE-EccCCc-e-eEEeec-CCc------eEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015650 221 AVSQGVGSLVLVCPGL-Q---KGQVRVE-HYASKR-T-KFIMAH-DSR------IACFALTQDGQLLATSSTKGTLVRIF 286 (403)
Q Consensus 221 ~~~~~~~~~~~~~~g~-~---d~~i~v~-d~~~~~-~-~~~~~~-~~~------i~~~~~sp~g~~l~s~~~dg~~i~iw 286 (403)
...+..+++++.+-.. + -..|... |.+.+. + ..-..+ ... -..+.-.++.++|+.-+.+...+.+|
T Consensus 337 qy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~ 416 (463)
T KOG1645|consen 337 QYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQ 416 (463)
T ss_pred eecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEe
Confidence 3333334444333110 0 0111110 111111 0 000111 000 01122234556665444333339999
Q ss_pred EcCCCcEEEEEecCCCcccEEEEEeCCC--CCEEEEEeCCCcEEEEEeec
Q 015650 287 NTLDGTLLQEVRRGADRAEIYSLAFSSN--AQWLAVSSDKGTVHVFNLKV 334 (403)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~v~~l~~s~d--~~~l~s~~~dg~v~iwd~~~ 334 (403)
|..+++.++++.. ..+|.++..... +.+|++-. |..++||..+.
T Consensus 417 D~~s~evvQ~l~~---~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 417 DPHSFEVVQTLAL---SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred ccchhheeeeccc---CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 9999999999984 478888876542 34666655 55799987654
No 338
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.11 E-value=0.0026 Score=57.38 Aligned_cols=234 Identities=12% Similarity=0.070 Sum_probs=132.4
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCc----------------ceeEEEEeeeCCeEEEeeCC
Q 015650 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGG----------------GIGVVEMLFRCNILALVGGG 148 (403)
Q Consensus 85 ~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~~s~~ 148 (403)
...+....|+|+|+.+|...++.|.+++..++.... .+.. +. -..-..+.|+|++..|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~-lT~d-g~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQ-LTTD-GEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEE-SES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecCCCeeEEEecCceEEEECCCCCeEE-eccc-cceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 567788999999999999999999999886663331 1221 10 01123456777765544322
Q ss_pred CCCC----------------C---------------CCceEEEEECCCCceeE-EEe-----cCCceeEEEEecCce-EE
Q 015650 149 PDPQ----------------Y---------------PLNKVMIWDDHQSRCIG-ELS-----FRSEVRSVKLRRDRI-IV 190 (403)
Q Consensus 149 ~d~~----------------~---------------~~~~i~iwd~~~~~~~~-~~~-----~~~~i~~~~~~~~~~-~~ 190 (403)
.|.. + +.-.+.|+|+.+++... ... ....+..+.|.+++. ++
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 2200 0 11346667877776432 111 244578899999988 44
Q ss_pred E--e-----cCeEEEEEcCCceeeeEee-ccCCCc---eeEEEe-eCCCeEEEEeeCCccCeEEEEEccCCceeEEeecC
Q 015650 191 V--L-----EQKIFVYNFADLKLLHQIE-TIANPK---GLCAVS-QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD 258 (403)
Q Consensus 191 ~--~-----d~~i~i~d~~~~~~~~~~~-~~~~~~---~~~~~~-~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~ 258 (403)
+ . .-.+.++|..+++....+. .....+ ....+. +++..++..+....-..|.+++..++..+.+....
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~ 279 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGD 279 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SS
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCc
Confidence 4 2 2257788887765433332 222332 345554 77777776664222334556677777777776666
Q ss_pred CceEE-EEEcCCCCEEE-EEeCCC--c-EEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe
Q 015650 259 SRIAC-FALTQDGQLLA-TSSTKG--T-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS 322 (403)
Q Consensus 259 ~~i~~-~~~sp~g~~l~-s~~~dg--~-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~ 322 (403)
-.|.. +.++++++.|+ ++..++ . .|+.-++..+..+..+.... ..-..+.|||+|++++-.+
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~--~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED--GDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS--STTEEEEE-TTSSEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC--CCceEEEECCCCCEEEEEE
Confidence 67754 67888877665 444322 2 15555666234445555321 1126899999999887543
No 339
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.11 E-value=0.00037 Score=67.54 Aligned_cols=132 Identities=14% Similarity=0.250 Sum_probs=93.9
Q ss_pred cCeEEEEEcCCceeeeEeeccCCCceeEEEeeC-------CCeEEEEeeCCccCeEEEEEccCCc--eeEEe----ecCC
Q 015650 193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQG-------VGSLVLVCPGLQKGQVRVEHYASKR--TKFIM----AHDS 259 (403)
Q Consensus 193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~g~~d~~i~v~d~~~~~--~~~~~----~~~~ 259 (403)
.+.|+-.|++.|+.+..++.+... ....+.|+ +...++.. .+..+..||.|-.. +..-. ....
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGl---s~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGL---SDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEE---CCCceEEeccCCCCCceeeccccccccCC
Confidence 468999999999999999876643 24555553 33445543 67889999998732 22111 2345
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650 260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (403)
Q Consensus 260 ~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~ 333 (403)
..+|++-+.+| +||.|+.+|. ||+||- .|+.-++.-.+ -..+|.+|..+.||++|++.+ +..|.+++..
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~-IRLyd~-~g~~AKT~lp~-lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGD-IRLYDR-LGKRAKTALPG-LGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCc-EEeecc-cchhhhhcCCC-CCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 67888888777 6889999999 999994 44433333322 457999999999999987766 5578888875
No 340
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.0012 Score=62.75 Aligned_cols=188 Identities=17% Similarity=0.252 Sum_probs=115.4
Q ss_pred eeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCc-eeEEEEecCceEEEe---c-C----eEEEEEcCCc--
Q 015650 137 FRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSE-VRSVKLRRDRIIVVL---E-Q----KIFVYNFADL-- 204 (403)
Q Consensus 137 ~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~-i~~~~~~~~~~~~~~---d-~----~i~i~d~~~~-- 204 (403)
+++++..++-|..+ |.|.+.+ ..-+.++.++ ++.. |..+....+..++++ | + .+++|+++.-
T Consensus 31 ~~s~~~~vvigt~~-----G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 31 CSSSTGSVVIGTAD-----GRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EcCCCceEEEeecc-----ccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 44555566666666 7777776 3344546666 5555 444544455455552 2 2 6999998752
Q ss_pred ----eeee--Eeec-----cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC---C--ceeEEeecCCceEEEEEcC
Q 015650 205 ----KLLH--QIET-----IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---K--RTKFIMAHDSRIACFALTQ 268 (403)
Q Consensus 205 ----~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~---~--~~~~~~~~~~~i~~~~~sp 268 (403)
+++. .+.+ ...++.+++++.+-. .+++ |-.+|.|..+.-+- . +.......+.+|+.+.+..
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~-Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK--TIVC-GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEcccc--EEEE-EecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence 2331 1222 244567788887744 3443 66889999885332 1 2222233467899999999
Q ss_pred CCCEEEEEeCCCcEEEEEEcCCCcE-EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650 269 DGQLLATSSTKGTLVRIFNTLDGTL-LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 269 ~g~~l~s~~~dg~~i~iwd~~~~~~-~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
+++.++....... |.+|.+....+ ...+.. |...++|..+++....+++++ +..|.+|+.+..+.
T Consensus 182 d~~s~lFv~Tt~~-V~~y~l~gr~p~~~~ld~--~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 182 DGKSVLFVATTEQ-VMLYSLSGRTPSLKVLDN--NGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGP 247 (933)
T ss_pred CCceeEEEEecce-eEEEEecCCCcceeeecc--CCccceeeecCCCCccEEEec-CceEEEEcCCCcce
Confidence 9987333333445 99999874442 333442 667889999987655566665 44699999986664
No 341
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.09 E-value=0.0013 Score=61.70 Aligned_cols=102 Identities=11% Similarity=-0.081 Sum_probs=72.5
Q ss_pred ecCceEEE-ecCeEEEEEcCC-----ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce------
Q 015650 184 RRDRIIVV-LEQKIFVYNFAD-----LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT------ 251 (403)
Q Consensus 184 ~~~~~~~~-~d~~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~------ 251 (403)
.++|++.. .+++|.+.|.++ .+.+..+.... ....+.++||++.+++ +|..+.++.|+|+...+.
T Consensus 285 vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyV--anklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIA--NGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCCEEEECCCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEE--eCCCCCcEEEEEChhhhhhhhccC
Confidence 44666555 567899999988 35566665544 3477899999986544 356789999999987331
Q ss_pred -------eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC
Q 015650 252 -------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (403)
Q Consensus 252 -------~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~ 290 (403)
....- ...-...+|+++|....+-.-|.. |..||+..
T Consensus 362 ~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsq-v~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQ-IVKWNIEA 405 (635)
T ss_pred CccceEEEeecc-CCCcceEEECCCCCEEEeEeecce-eEEEehHH
Confidence 11222 233456789999988888888998 99999875
No 342
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.08 E-value=0.0032 Score=54.72 Aligned_cols=196 Identities=13% Similarity=0.142 Sum_probs=119.0
Q ss_pred eEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEE-------------ecccCcceeEEEEe---eeCCeEEEeeCCCCC
Q 015650 88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR-------------DFERGGGIGVVEML---FRCNILALVGGGPDP 151 (403)
Q Consensus 88 i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~-------------~~~~~~~~~v~~~~---~~~~~~~~~s~~~d~ 151 (403)
|..+...++-..|++-+|+.+.+++++........ .+. ....+..++ .......++.+-.
T Consensus 38 I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~f~~~~~~~~~~~L~va~k-- 113 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLP--ETKGVSFFAVNGGHEGSRRLCVAVK-- 113 (275)
T ss_pred EEEEEEecccCEEEEEcCCccEEEEchhhcccccccccccccccccccccc--ccCCeeEEeeccccccceEEEEEEC--
Confidence 99999999888888888888999998654433211 121 222333333 2223344444443
Q ss_pred CCCCceEEEEECCCC-----ceeEEEecCCceeEEEEecCceEEEecCeEEEEEcCCceeeeEeeccCCC---------c
Q 015650 152 QYPLNKVMIWDDHQS-----RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANP---------K 217 (403)
Q Consensus 152 ~~~~~~i~iwd~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---------~ 217 (403)
..|.+|..... +..+++.....+..++|..+...++..+...+.|+.++.....+...... .
T Consensus 114 ----k~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~ 189 (275)
T PF00780_consen 114 ----KKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSS 189 (275)
T ss_pred ----CEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCC
Confidence 58888877653 46667778899999999977777778888999999977654433211111 1
Q ss_pred eeEEEeeCCCeEEEEeeCCccCeEEEEEccCCcee--EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEE
Q 015650 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295 (403)
Q Consensus 218 ~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~--~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~ 295 (403)
..+.+-.-++..++++ .+..-...|..+...+ .+.- .....++++ ...||+..+. +. |.||++.++++++
T Consensus 190 ~~~~~~~~~~~e~Ll~---~~~~g~fv~~~G~~~r~~~i~W-~~~p~~~~~--~~pyli~~~~-~~-iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 190 KPLGIFQLSDNEFLLC---YDNIGVFVNKNGEPSRKSTIQW-SSAPQSVAY--SSPYLIAFSS-NS-IEVRSLETGELVQ 261 (275)
T ss_pred CceEEEEeCCceEEEE---ecceEEEEcCCCCcCcccEEEc-CCchhEEEE--ECCEEEEECC-CE-EEEEECcCCcEEE
Confidence 1122222222234444 3444444555553332 2322 224556666 3457776555 55 9999999999999
Q ss_pred EEec
Q 015650 296 EVRR 299 (403)
Q Consensus 296 ~~~~ 299 (403)
.+..
T Consensus 262 ~i~~ 265 (275)
T PF00780_consen 262 TIPL 265 (275)
T ss_pred EEEC
Confidence 8874
No 343
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.0014 Score=60.98 Aligned_cols=202 Identities=9% Similarity=0.074 Sum_probs=116.5
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650 81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (403)
Q Consensus 81 ~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~ 159 (403)
...+...|.--++...+++++.|++.| +.+|+-..+... ..... +....+.....+++..+++.++.. |.|.
T Consensus 29 ~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~-~~~~~~~~~~vs~~e~lvAagt~~-----g~V~ 101 (726)
T KOG3621|consen 29 PGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNE-GATGITCVRSVSSVEYLVAAGTAS-----GRVS 101 (726)
T ss_pred cccCcceEEEEEeecCCceEEEecccceEEEEecCchhhh-ccccc-CccceEEEEEecchhHhhhhhcCC-----ceEE
Confidence 344566676677788899999999877 899986655433 22332 344555666677777777777777 9999
Q ss_pred EEECCCCcee-----EEEe--cCCceeEEEEecCceEEE---ecCeEEEEEcCCc----eeeeEeeccCCCceeEEEeeC
Q 015650 160 IWDDHQSRCI-----GELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL----KLLHQIETIANPKGLCAVSQG 225 (403)
Q Consensus 160 iwd~~~~~~~-----~~~~--~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~ 225 (403)
++-+..+.+- .... |+..|++++|++++..++ ..|+|.+-.+... ...+.+-... -.++.+..-
T Consensus 102 v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d--s~IVQlD~~ 179 (726)
T KOG3621|consen 102 VFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSED--SEIVQLDYL 179 (726)
T ss_pred eehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccC--cceEEeecc
Confidence 9987664321 1122 678999999999999888 3578887777651 1111111111 234444444
Q ss_pred CCeEEEEeeCCccCeEEEEEccCCceeEEe--ecCCc-eEEEEEcCC----CCEEEEEeCCCcEEEEEEcC-CCcEEEEE
Q 015650 226 VGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDSR-IACFALTQD----GQLLATSSTKGTLVRIFNTL-DGTLLQEV 297 (403)
Q Consensus 226 ~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~--~~~~~-i~~~~~sp~----g~~l~s~~~dg~~i~iwd~~-~~~~~~~~ 297 (403)
...+++++ --...+++.+.+.+..+- ..++. -...+|-|. ..-.+.++.-| .|+|... .|+.+++.
T Consensus 180 q~~LLVSt----l~r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG--~RlWead~~G~V~~Th 253 (726)
T KOG3621|consen 180 QSYLLVST----LTRCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG--LRLWEADFAGEVIKTH 253 (726)
T ss_pred cceehHhh----hhhhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC--CceEEeecceeEEEee
Confidence 44333332 123445555554433321 12221 223445443 33444556666 5888764 35554443
No 344
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.05 E-value=0.0061 Score=55.97 Aligned_cols=169 Identities=14% Similarity=0.171 Sum_probs=92.1
Q ss_pred eEEEEECCCCceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEee--ccCCCceeE---EEeeCCCe
Q 015650 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIE--TIANPKGLC---AVSQGVGS 228 (403)
Q Consensus 157 ~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~ 228 (403)
.|+||+ ..|+++..+. ..+.|.++.|+.+..+++ .||.+++||+. |+....+. .....+... +....+.+
T Consensus 62 ~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEEC-CCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC
Confidence 588888 5677787777 448999999999877777 69999999986 33311111 011111111 11222244
Q ss_pred EEEEeeCCccCeEEEEEccCCc--eeEEe---e-------cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEE
Q 015650 229 LVLVCPGLQKGQVRVEHYASKR--TKFIM---A-------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (403)
Q Consensus 229 ~~~~~~g~~d~~i~v~d~~~~~--~~~~~---~-------~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~ 296 (403)
+++.+ .++.+.+..--... .+.+. . +........++.+....+....++. +.+.+-...+.
T Consensus 140 ivvLt---~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~-i~~i~~~~~~~--- 212 (410)
T PF04841_consen 140 IVVLT---GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGET-IYIIDENSFKQ--- 212 (410)
T ss_pred EEEEC---CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCE-EEEEEcccccc---
Confidence 44443 33444443222211 11111 0 0000000223444444444444444 55333222111
Q ss_pred EecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 297 ~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
+. ..+++..|+.||+|++||.-..+|.+.+...+-.+.
T Consensus 213 i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~ 250 (410)
T PF04841_consen 213 ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEK 250 (410)
T ss_pred cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccce
Confidence 21 236899999999999999999999998887655544
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.04 E-value=0.00078 Score=61.85 Aligned_cols=210 Identities=12% Similarity=0.090 Sum_probs=107.3
Q ss_pred ceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEEe--cCeEEEEEcCCcee
Q 015650 129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKL 206 (403)
Q Consensus 129 ~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--d~~i~i~d~~~~~~ 206 (403)
......+.++|++.+++.++. |...|+.....+.. ..+.-....|...+.+.+. .++|.++.--+.+.
T Consensus 32 ~~~p~~ls~npngr~v~V~g~------geY~iyt~~~~r~k----~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGD------GEYEIYTALAWRNK----AFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEET------TEEEEEETTTTEEE----EEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-T
T ss_pred CcCCeeEEECCCCCEEEEEcC------CEEEEEEccCCccc----ccCceeEEEEecCccEEEEECCCeEEEEEcCcccc
Confidence 345678889999887777554 78888873332221 2244557889998888884 57899964222333
Q ss_pred eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015650 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF 286 (403)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iw 286 (403)
...++... ..-.+-. |. ++.+. .++.|.+||+.+++...-.... .|..+.|+++|.+++..+.+. +.|+
T Consensus 102 ~k~i~~~~---~~~~If~-G~-LL~~~---~~~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~~--i~il 170 (443)
T PF04053_consen 102 VKSIKLPF---SVEKIFG-GN-LLGVK---SSDFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKDS--IYIL 170 (443)
T ss_dssp T-----SS----EEEEE--SS-SEEEE---ETTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S-S--EEEE
T ss_pred ceEEcCCc---ccceEEc-Cc-EEEEE---CCCCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCCe--EEEE
Confidence 23333211 1222222 33 33332 3458999999986654333222 389999999999999988775 7777
Q ss_pred EcCCC-----------cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccc
Q 015650 287 NTLDG-----------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSS 355 (403)
Q Consensus 287 d~~~~-----------~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (403)
+.... .....+.. -...|.+..|..| .++-.+.. +|+. +-.|+.
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E--~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~------------------ 225 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHE--ISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET------------------ 225 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEE--E-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE------------------
T ss_pred EecchhcccccccCchhceEEEEE--ecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc------------------
Confidence 64322 02233321 1357888999765 44444444 6766 555551
Q ss_pred cccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCC
Q 015650 356 LSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG 402 (403)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG 402 (403)
..++--+.+++.+.+.++.+.|.....|+
T Consensus 226 ------------------~~i~~ld~~~yllgy~~~~~~ly~~Dr~~ 254 (443)
T PF04053_consen 226 ------------------GIIAHLDKPLYLLGYLPKENRLYLIDRDG 254 (443)
T ss_dssp ------------------EEEEE-SS--EEEEEETTTTEEEEE-TT-
T ss_pred ------------------ceEEEcCCceEEEEEEccCCEEEEEECCC
Confidence 22333355677777777777777766654
No 346
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=9.2e-05 Score=69.54 Aligned_cols=122 Identities=17% Similarity=0.199 Sum_probs=91.7
Q ss_pred CCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCC
Q 015650 235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314 (403)
Q Consensus 235 g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d 314 (403)
|..+|.|++++..... .....|... .-+|.++++|+.||+ |.|..+-+.+...++. ...++.+++++||
T Consensus 55 GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~~~~~~~d---f~rpiksial~Pd 123 (846)
T KOG2066|consen 55 GTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTDDEITQYD---FKRPIKSIALHPD 123 (846)
T ss_pred ccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCc-EEEeeccCCccceeEe---cCCcceeEEeccc
Confidence 6688999999987765 444445443 668999999999999 9999998888877776 4478999999998
Q ss_pred -----CCEEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEec
Q 015650 315 -----AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG 389 (403)
Q Consensus 315 -----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs 389 (403)
.+++++|+..| +.++.-+=-++ |.-..+..-+|.|.++.|
T Consensus 124 ~~~~~sk~fv~GG~ag-lvL~er~wlgn---------------------------------k~~v~l~~~eG~I~~i~W- 168 (846)
T KOG2066|consen 124 FSRQQSKQFVSGGMAG-LVLSERNWLGN---------------------------------KDSVVLSEGEGPIHSIKW- 168 (846)
T ss_pred hhhhhhhheeecCcce-EEEehhhhhcC---------------------------------ccceeeecCccceEEEEe-
Confidence 56899999888 77765433221 111123444678988888
Q ss_pred cCCCEEEEEccCCC
Q 015650 390 HQKNTVVILGMDGR 403 (403)
Q Consensus 390 ~d~~~l~~~~~dG~ 403 (403)
.|+.+|-++.+|.
T Consensus 169 -~g~lIAWand~Gv 181 (846)
T KOG2066|consen 169 -RGNLIAWANDDGV 181 (846)
T ss_pred -cCcEEEEecCCCc
Confidence 8899999998884
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0071 Score=55.10 Aligned_cols=216 Identities=13% Similarity=0.096 Sum_probs=143.7
Q ss_pred CeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEE--EeeCC-CCCCCCCceEEEE
Q 015650 87 TLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILA--LVGGG-PDPQYPLNKVMIW 161 (403)
Q Consensus 87 ~i~~i~~s~d~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~s~~-~d~~~~~~~i~iw 161 (403)
.-..+++++++..+.... ++.|.+.|..+......... +. .-..+.+++++.. ++-.. .+ +.+.+.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v--G~--~P~~~~~~~~~~~vYV~n~~~~~-----~~vsvi 145 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV--GL--GPVGLAVDPDGKYVYVANAGNGN-----NTVSVI 145 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee--cc--CCceEEECCCCCEEEEEecccCC-----ceEEEE
Confidence 345678888887544443 56699999766554422222 22 4556666666533 33332 25 899999
Q ss_pred ECCCCceeEEEe-cCCceeEEEEecCceEEE----ecCeEEEEEcCCceeee-E----eeccCCCceeEEEeeCCCeEEE
Q 015650 162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLH-Q----IETIANPKGLCAVSQGVGSLVL 231 (403)
Q Consensus 162 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~ 231 (403)
|..+++.+.... ...+ ..+++.|++..+. .++.|.+.|.......+ . +.. ...-..+.+.+++...++
T Consensus 146 d~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~yV 223 (381)
T COG3391 146 DAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV-GTGPAGIAVDPDGNRVYV 223 (381)
T ss_pred eCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc-CCCCceEEECCCCCEEEE
Confidence 999999888865 3334 8999999998665 37899999977655442 1 211 222356899999999888
Q ss_pred EeeCCccCeEEEEEccCCceeEEee-cCC-ceEEEEEcCCCCEEEEEeCC-CcEEEEEEcCCCcEEEEEecCCCc-ccEE
Q 015650 232 VCPGLQKGQVRVEHYASKRTKFIMA-HDS-RIACFALTQDGQLLATSSTK-GTLVRIFNTLDGTLLQEVRRGADR-AEIY 307 (403)
Q Consensus 232 ~~~g~~d~~i~v~d~~~~~~~~~~~-~~~-~i~~~~~sp~g~~l~s~~~d-g~~i~iwd~~~~~~~~~~~~~~~~-~~v~ 307 (403)
+..++.++.+...|...+....... -.. ....+.++|+|+++...... +. +.+-|..+......+..+... ..+.
T Consensus 224 ~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~-V~vid~~~~~v~~~~~~~~~~~~~~~ 302 (381)
T COG3391 224 ANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGT-VSVIDGATDRVVKTGPTGNEALGEPV 302 (381)
T ss_pred EeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCe-EEEEeCCCCceeeeecccccccccce
Confidence 8755445789999988877655421 111 45678999999999887554 66 999999888887776643221 2355
Q ss_pred EEEeCCC
Q 015650 308 SLAFSSN 314 (403)
Q Consensus 308 ~l~~s~d 314 (403)
.+++.+.
T Consensus 303 ~~~~~~~ 309 (381)
T COG3391 303 SIAISPL 309 (381)
T ss_pred eccceee
Confidence 6666554
No 348
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.01 E-value=0.0066 Score=51.09 Aligned_cols=195 Identities=12% Similarity=0.083 Sum_probs=104.5
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEc-CCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCce
Q 015650 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (403)
Q Consensus 80 ~~~~~~~~i~~i~~s~d~~~l~~~~-~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (403)
.+.+-...+..|+|+|+...|++.. +.+ |..++.+ ++.+....+. .....-.+.+..++.++++..++ +.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~--g~~D~EgI~y~g~~~~vl~~Er~-----~~ 87 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD--GFGDYEGITYLGNGRYVLSEERD-----QR 87 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S--S-SSEEEEEE-STTEEEEEETTT-----TE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC--CCCCceeEEEECCCEEEEEEcCC-----Cc
Confidence 3455556799999999876555554 444 5555543 3434333443 45567788888889988888777 89
Q ss_pred EEEEECCCCc------eeEEEe------cCCceeEEEEecC-ceEEE--ecCeEEEEEcCC---ceeeeEe--------e
Q 015650 158 VMIWDDHQSR------CIGELS------FRSEVRSVKLRRD-RIIVV--LEQKIFVYNFAD---LKLLHQI--------E 211 (403)
Q Consensus 158 i~iwd~~~~~------~~~~~~------~~~~i~~~~~~~~-~~~~~--~d~~i~i~d~~~---~~~~~~~--------~ 211 (403)
+.++++.... ....+. +...+..++|.+. +++++ ...-..+|.++. ...+... .
T Consensus 88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~ 167 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDK 167 (248)
T ss_dssp EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccc
Confidence 9999883321 122232 2345899999996 44444 233344554432 1111111 1
Q ss_pred ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecC---------CceEEEEEcCCCCEEEEEeCCCcE
Q 015650 212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD---------SRIACFALTQDGQLLATSSTKGTL 282 (403)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~---------~~i~~~~~sp~g~~l~s~~~dg~~ 282 (403)
........++++|..+++++.+ .....|..+|...+.+..+.-.. .....|+|+++|++.+ .++-+.
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS--~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNl- 243 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILS--DESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNL- 243 (248)
T ss_dssp --SS---EEEEETTTTEEEEEE--TTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTE-
T ss_pred ceeccccceEEcCCCCeEEEEE--CCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCce-
Confidence 1233457789999988888886 57889999996665444433221 2567899999997555 455554
Q ss_pred EEEE
Q 015650 283 VRIF 286 (403)
Q Consensus 283 i~iw 286 (403)
.++|
T Consensus 244 fy~f 247 (248)
T PF06977_consen 244 FYRF 247 (248)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
No 349
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.99 E-value=0.0073 Score=50.84 Aligned_cols=196 Identities=8% Similarity=0.066 Sum_probs=111.7
Q ss_pred EecccCcceeEEEEeeeCC-eEEEeeCCCCCCCCCceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEEe---cCe
Q 015650 122 RDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQK 195 (403)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~---d~~ 195 (403)
+.+. +-...+..+.|.++ +..++..+.. +.|..++. +|+.++.+. ..+....|++..++.+++. ++.
T Consensus 15 ~~l~-g~~~e~SGLTy~pd~~tLfaV~d~~-----~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~ 87 (248)
T PF06977_consen 15 KPLP-GILDELSGLTYNPDTGTLFAVQDEP-----GEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQR 87 (248)
T ss_dssp EE-T-T--S-EEEEEEETTTTEEEEEETTT-----TEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTE
T ss_pred eECC-CccCCccccEEcCCCCeEEEEECCC-----CEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCc
Confidence 4454 44556999999985 5566666666 88988885 688888887 3467889999999998883 678
Q ss_pred EEEEEcCCc------eeeeEee-----ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--C--ceeEE------
Q 015650 196 IFVYNFADL------KLLHQIE-----TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--K--RTKFI------ 254 (403)
Q Consensus 196 i~i~d~~~~------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~--~~~~~------ 254 (403)
+.++++... .....+. .....+..+++.+..+.++++- +..-..+|.++. . .....
T Consensus 88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~~~~~~~~ 164 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFVSDDQDLD 164 (248)
T ss_dssp EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceeeccccccc
Confidence 988888431 1112222 1233467899999999888774 455556666554 1 11111
Q ss_pred --eecCCceEEEEEcCCCCEE-EEEeCCCcEEEEEEcCCCcEEEEEecCC--Cc-----ccEEEEEeCCCCCEEEEEeCC
Q 015650 255 --MAHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLDGTLLQEVRRGA--DR-----AEIYSLAFSSNAQWLAVSSDK 324 (403)
Q Consensus 255 --~~~~~~i~~~~~sp~g~~l-~s~~~dg~~i~iwd~~~~~~~~~~~~~~--~~-----~~v~~l~~s~d~~~l~s~~~d 324 (403)
......+.++.++|....| +.+..... |.++| .+|+.+..+.... |. ...-.|+|.++|.+.++ ++-
T Consensus 165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~-l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEp 241 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDPRTGHLLILSDESRL-LLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEP 241 (248)
T ss_dssp -HT--SS---EEEEETTTTEEEEEETTTTE-EEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETT
T ss_pred cccceeccccceEEcCCCCeEEEEECCCCe-EEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCC
Confidence 1133457899999965544 55555555 88999 6788776655321 11 24678999999865554 566
Q ss_pred CcEEEE
Q 015650 325 GTVHVF 330 (403)
Q Consensus 325 g~v~iw 330 (403)
+..++|
T Consensus 242 Nlfy~f 247 (248)
T PF06977_consen 242 NLFYRF 247 (248)
T ss_dssp TEEEEE
T ss_pred ceEEEe
Confidence 666655
No 350
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.98 E-value=0.015 Score=54.99 Aligned_cols=228 Identities=12% Similarity=0.170 Sum_probs=122.1
Q ss_pred CCCEEEEEcCCcEEEEEcCCCeeEEEEecccC---cceeEE--EEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeE
Q 015650 96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERG---GGIGVV--EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG 170 (403)
Q Consensus 96 d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~---~~~~v~--~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~ 170 (403)
++++++...++.|.-.|..+++.......... ....+. .+....++..++ +..+ +.|+-+|.++|+.+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v-~~~~-----g~v~AlD~~TG~~~W 134 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFF-GTFD-----GRLVALDAETGKQVW 134 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEE-ecCC-----CeEEEEECCCCCEee
Confidence 44444444455588888887777655444311 000011 111222133333 3344 899999999999988
Q ss_pred EEecCCc------ee-EEEEecCceEEE-e----------cCeEEEEEcCCceeeeEeeccCCC----------------
Q 015650 171 ELSFRSE------VR-SVKLRRDRIIVV-L----------EQKIFVYNFADLKLLHQIETIANP---------------- 216 (403)
Q Consensus 171 ~~~~~~~------i~-~~~~~~~~~~~~-~----------d~~i~i~d~~~~~~~~~~~~~~~~---------------- 216 (403)
.+..... +. ...+. ++.+++ . ++.++.+|..+|+.+..++.....
T Consensus 135 ~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 213 (488)
T cd00216 135 KFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGP 213 (488)
T ss_pred eecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecC
Confidence 8773322 11 22222 244444 2 468999999999988877542110
Q ss_pred ----c-eeEEEeeCCCeEEEEeeCC---------------ccCeEEEEEccCCceeEEee---cCC----ceEEEEEc--
Q 015650 217 ----K-GLCAVSQGVGSLVLVCPGL---------------QKGQVRVEHYASKRTKFIMA---HDS----RIACFALT-- 267 (403)
Q Consensus 217 ----~-~~~~~~~~~~~~~~~~~g~---------------~d~~i~v~d~~~~~~~~~~~---~~~----~i~~~~~s-- 267 (403)
+ ...++.+.++.+++.+... .++.|.-+|..+++..-... |.. ......+.
T Consensus 214 ~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~ 293 (488)
T cd00216 214 GGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADI 293 (488)
T ss_pred CCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEec
Confidence 0 1123333344444443110 12368888888877643321 211 00001111
Q ss_pred --CCCC---EEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE------------------eCC
Q 015650 268 --QDGQ---LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS------------------SDK 324 (403)
Q Consensus 268 --p~g~---~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~------------------~~d 324 (403)
-+|. +++.++.+|. +...|.++|+.+-..... ...++.+| ..+..+ ..+
T Consensus 294 ~~~~g~~~~~V~~g~~~G~-l~ald~~tG~~~W~~~~~-----~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~ 365 (488)
T cd00216 294 KPKDGKPVPAIVHAPKNGF-FYVLDRTTGKLISARPEV-----EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGK 365 (488)
T ss_pred cccCCCeeEEEEEECCCce-EEEEECCCCcEeeEeEee-----ccccccCC--ceEEEccccccccCcccccCCCCCCCc
Confidence 1343 5778888999 999999999988766521 11233444 222222 235
Q ss_pred CcEEEEEeecCCCC
Q 015650 325 GTVHVFNLKVNSGS 338 (403)
Q Consensus 325 g~v~iwd~~~~~~~ 338 (403)
|.|.-.|+.+++..
T Consensus 366 G~l~AlD~~tG~~~ 379 (488)
T cd00216 366 GGLAALDPKTGKVV 379 (488)
T ss_pred eEEEEEeCCCCcEe
Confidence 67888888887753
No 351
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.95 E-value=0.011 Score=51.49 Aligned_cols=198 Identities=11% Similarity=0.104 Sum_probs=113.3
Q ss_pred EEEEcCCCCEEEEEc---CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC-C
Q 015650 90 HISFNQDHGCFAAGT---DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH-Q 165 (403)
Q Consensus 90 ~i~~s~d~~~l~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~-~ 165 (403)
.++++.||+++.+.. ...|.|-|+...+-..+.... ....-.-..+++...++++ |.+.-..+. .
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P----GC~~iyP~~~~~F~~lC~D-------Gsl~~v~Ld~~ 167 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP----GCWLIYPSGNRGFSMLCGD-------GSLLTVTLDAD 167 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT----SEEEEEEEETTEEEEEETT-------SCEEEEEETST
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC----CEEEEEecCCCceEEEecC-------CceEEEEECCC
Confidence 457889999988775 344999999887766333332 2222222334554444443 888888876 5
Q ss_pred CceeEEEe---c--CCce-eEEEEec-CceEEE--ecCeEEEEEcCCcee--eeEeec----------cCCCceeEEEee
Q 015650 166 SRCIGELS---F--RSEV-RSVKLRR-DRIIVV--LEQKIFVYNFADLKL--LHQIET----------IANPKGLCAVSQ 224 (403)
Q Consensus 166 ~~~~~~~~---~--~~~i-~~~~~~~-~~~~~~--~d~~i~i~d~~~~~~--~~~~~~----------~~~~~~~~~~~~ 224 (403)
|+...... + ..++ ..-++.. ++.+++ .+|.|+-.|+..... ...+.. ..+....+++++
T Consensus 168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 55543332 1 2222 2334443 345554 689999988865432 122211 123345688988
Q ss_pred CCCeEEEEeeCC-----ccC--eEEEEEccCCceeEEeecCCceEEEEEcCCCC-EEEEE-eCCCcEEEEEEcCCCcEEE
Q 015650 225 GVGSLVLVCPGL-----QKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQ-LLATS-STKGTLVRIFNTLDGTLLQ 295 (403)
Q Consensus 225 ~~~~~~~~~~g~-----~d~--~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~s~-~~dg~~i~iwd~~~~~~~~ 295 (403)
..+.+|+..-.. +++ .|.++|+.+++...-..-..++.+|..+.+.+ +|++. ..++. |.+||..+|+.++
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~-l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGT-LDVYDAATGKLVR 326 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTE-EEEEETTT--EEE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCe-EEEEeCcCCcEEe
Confidence 888888765211 222 46666777755433222345678999998776 66554 45788 9999999999999
Q ss_pred EEec
Q 015650 296 EVRR 299 (403)
Q Consensus 296 ~~~~ 299 (403)
++..
T Consensus 327 ~~~~ 330 (342)
T PF06433_consen 327 SIEQ 330 (342)
T ss_dssp EE--
T ss_pred ehhc
Confidence 9885
No 352
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.87 E-value=0.023 Score=54.07 Aligned_cols=235 Identities=9% Similarity=0.048 Sum_probs=126.8
Q ss_pred CCEEEEEcCCcEEEEEcCCCeeEEEEecccCcc--eeEEE-EeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe
Q 015650 97 HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGG--IGVVE-MLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS 173 (403)
Q Consensus 97 ~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~--~~v~~-~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~ 173 (403)
+++++...++.+.-.|..+++.+....+. ... ..+.+ .... ++..++.......-..|.|.-+|.++|+.+-.+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~-~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNG-DYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccc-cccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 34444334666888888888877655442 111 11111 1112 3344443221000011889999999998887665
Q ss_pred --cCC------------------------------ce-eEEEEecCceEEE--e-------------cC----eEEEEEc
Q 015650 174 --FRS------------------------------EV-RSVKLRRDRIIVV--L-------------EQ----KIFVYNF 201 (403)
Q Consensus 174 --~~~------------------------------~i-~~~~~~~~~~~~~--~-------------d~----~i~i~d~ 201 (403)
... .+ ..+++.++..++. . |+ .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 111 01 1235555433333 1 12 6888999
Q ss_pred CCceeeeEeeccCCCc---------eeEEEeeCCCeEEEEeeCCccCeEEEEEccCCcee---------EE----eecC-
Q 015650 202 ADLKLLHQIETIANPK---------GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---------FI----MAHD- 258 (403)
Q Consensus 202 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~---------~~----~~~~- 258 (403)
++|+....++...+.+ ..+.+..+++..-++..+.++|.+.+.|.++++.. .. ....
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g 358 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTG 358 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCC
Confidence 9999988776533322 12233345553223333568999999999886542 11 0000
Q ss_pred Cc-----------------e-----------EEEEEcCCCCEEEEEeCC-------------------------------
Q 015650 259 SR-----------------I-----------ACFALTQDGQLLATSSTK------------------------------- 279 (403)
Q Consensus 259 ~~-----------------i-----------~~~~~sp~g~~l~s~~~d------------------------------- 279 (403)
.+ + ..++++|+..+++....+
T Consensus 359 ~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~ 438 (527)
T TIGR03075 359 RPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDD 438 (527)
T ss_pred CCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCC
Confidence 00 0 125667766665543333
Q ss_pred --CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650 280 --GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 280 --g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
|. |.-+|+.+++.+-...... ....+. ..-.+.+++.+..+|.++.+|.++++.
T Consensus 439 ~~g~-l~AiD~~tGk~~W~~~~~~--p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~ 494 (527)
T TIGR03075 439 HMGS-LIAWDPITGKIVWEHKEDF--PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEE 494 (527)
T ss_pred Ccee-EEEEeCCCCceeeEecCCC--CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCE
Confidence 34 6667877887766554321 111111 112455777788899999999999994
No 353
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.79 E-value=0.02 Score=51.99 Aligned_cols=231 Identities=15% Similarity=0.152 Sum_probs=113.6
Q ss_pred CeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCC
Q 015650 87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ 165 (403)
Q Consensus 87 ~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~ 165 (403)
.|+.+.|.++..-|++|...| |.||.+...+..-.+.. ..-..+.+.+ +-... +.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~-----~~~~~~~~~~----~~~~~-------~~~~l~di~~ 66 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQ-----PPDLDYNFRR----FSLNN-------SPGKLTDISD 66 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------S------GGG-------SS-SEEE-GG
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCC-----CcccCccccc----ccccC-------CCcceEEehh
Confidence 589999999988888888656 88888754332210000 0111111100 00000 1111222211
Q ss_pred --------C-ceeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeecc--------CCCceeEEEe--
Q 015650 166 --------S-RCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETI--------ANPKGLCAVS-- 223 (403)
Q Consensus 166 --------~-~~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~--------~~~~~~~~~~-- 223 (403)
| .+...+. ..++|++++.+.-|...+ .+|.+.|.|++....+..-... ...+..+.|.
T Consensus 67 r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm 146 (395)
T PF08596_consen 67 RAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVM 146 (395)
T ss_dssp G--TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEE
T ss_pred hCCcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEE
Confidence 1 2233333 578999999987777766 4899999999887766553221 1233445554
Q ss_pred -eCCCe---EEEEeeCCccCeEEEEEccC---Ccee-----EEeecCCceEEEE-EcCC---------------------
Q 015650 224 -QGVGS---LVLVCPGLQKGQVRVEHYAS---KRTK-----FIMAHDSRIACFA-LTQD--------------------- 269 (403)
Q Consensus 224 -~~~~~---~~~~~~g~~d~~i~v~d~~~---~~~~-----~~~~~~~~i~~~~-~sp~--------------------- 269 (403)
..++. ..+. .|...|.+.+|.+.- +... ....+.+.|..|. |+.+
T Consensus 147 ~~~~D~ySSi~L~-vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i 225 (395)
T PF08596_consen 147 TLGGDGYSSICLL-VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISI 225 (395)
T ss_dssp E-TTSSSEEEEEE-EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT---
T ss_pred ecCCCcccceEEE-EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCc
Confidence 23332 3333 366789999998652 1111 1124556666554 4222
Q ss_pred CCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEe-----CCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650 270 GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF-----SSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (403)
Q Consensus 270 g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~-----s~d~~~l~s~~~dg~v~iwd~~~~~~~ 338 (403)
..++++++. .. ++|+...+.+...+... .......+.+ ...+..|++-..+|.|++|.+..-+.+
T Consensus 226 ~g~vVvvSe-~~-irv~~~~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 226 PGYVVVVSE-SD-IRVFKPPKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp -EEEEEE-S-SE-EEEE-TT---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred CcEEEEEcc-cc-eEEEeCCCCcccceeec--cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 124555554 44 99999988877665542 2223334444 235667888889999999999887753
No 354
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0024 Score=60.41 Aligned_cols=152 Identities=15% Similarity=0.161 Sum_probs=99.4
Q ss_pred ccCCCCCCeEEEEEcCC-------------CCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCC-----
Q 015650 80 TSSSPPPTLLHISFNQD-------------HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN----- 140 (403)
Q Consensus 80 ~~~~~~~~i~~i~~s~d-------------~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----- 140 (403)
.+..|.+.|.-..+.-+ |.++++|+++| |.|-.+.+.+......+. ..+.+++++|+
T Consensus 53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~----rpiksial~Pd~~~~~ 128 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK----RPIKSIALHPDFSRQQ 128 (846)
T ss_pred eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecC----CcceeEEeccchhhhh
Confidence 45667766666655444 99999999776 999988877776555554 56777777776
Q ss_pred eEEEeeCCCCCCCCCceEEEEECCC---CceeEEEe-cCCceeEEEEecCceEEEecCeEEEEEcCCceeeeEeeccCCC
Q 015650 141 ILALVGGGPDPQYPLNKVMIWDDHQ---SRCIGELS-FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANP 216 (403)
Q Consensus 141 ~~~~~s~~~d~~~~~~~i~iwd~~~---~~~~~~~~-~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 216 (403)
...+++|+.. | +.++.-.- ...+ .+. ..++|.++.|..+-...+.|--|++||+.+++.+..++.....
T Consensus 129 sk~fv~GG~a-----g-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~ 201 (846)
T KOG2066|consen 129 SKQFVSGGMA-----G-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQS 201 (846)
T ss_pred hhheeecCcc-----e-EEEehhhhhcCccce-eeecCccceEEEEecCcEEEEecCCCcEEEeccccceeeccCCCCCC
Confidence 4567788776 7 77765221 1222 233 6889999999765444446888999999988877766543332
Q ss_pred ce------eEEEeeCCCeEEEEeeCCccCeEEEEEcc
Q 015650 217 KG------LCAVSQGVGSLVLVCPGLQKGQVRVEHYA 247 (403)
Q Consensus 217 ~~------~~~~~~~~~~~~~~~~g~~d~~i~v~d~~ 247 (403)
+. .+.|.++ ..++. | ...+|+|..++
T Consensus 202 ~R~e~fpphl~W~~~--~~LVI--G-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 202 VRPELFPPHLHWQDE--DRLVI--G-WGDSVKICSIK 233 (846)
T ss_pred CCcccCCCceEecCC--CeEEE--e-cCCeEEEEEEe
Confidence 22 2344433 33443 2 44578888777
No 355
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.79 E-value=0.02 Score=49.67 Aligned_cols=216 Identities=15% Similarity=0.198 Sum_probs=121.1
Q ss_pred CCCCEEEEEcCCcEEEEEcC-CCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeE---
Q 015650 95 QDHGCFAAGTDHGFRIYNCD-PFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG--- 170 (403)
Q Consensus 95 ~d~~~l~~~~~~~i~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~--- 170 (403)
..++.|+.|+++|+.+++.. ..... +.. +...|..+...++...++.-.+ +.++++++..-....
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~--~i~---~~~~I~ql~vl~~~~~llvLsd------~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPT--RIL---KLSSITQLSVLPELNLLLVLSD------GQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccce--eEe---ecceEEEEEEecccCEEEEEcC------CccEEEEchhhccccccc
Confidence 45788999999999999982 22222 222 3334888887775443333322 789999986654333
Q ss_pred ------------EEecCCceeEEE---EecCceEEE--ecCeEEEEEcCCc-----eeeeEeeccCCCceeEEEeeCCCe
Q 015650 171 ------------ELSFRSEVRSVK---LRRDRIIVV--LEQKIFVYNFADL-----KLLHQIETIANPKGLCAVSQGVGS 228 (403)
Q Consensus 171 ------------~~~~~~~i~~~~---~~~~~~~~~--~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 228 (403)
.+.....+...+ -......++ ...+|.+|..... +..+++... ..+..++|. ++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~ 150 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNK 150 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCE
Confidence 122233344444 112233333 5778888887653 345555443 455666666 444
Q ss_pred EEEEeeCCccCeEEEEEccCCceeEEeec-------------CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEE
Q 015650 229 LVLVCPGLQKGQVRVEHYASKRTKFIMAH-------------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295 (403)
Q Consensus 229 ~~~~~~g~~d~~i~v~d~~~~~~~~~~~~-------------~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~ 295 (403)
+.+++ .....+.|+.++....+... ..++..+.. +++.+|++- +.. -.+.| ..|+..+
T Consensus 151 i~v~~----~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~-g~fv~-~~G~~~r 221 (275)
T PF00780_consen 151 ICVGT----SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNI-GVFVN-KNGEPSR 221 (275)
T ss_pred EEEEe----CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cce-EEEEc-CCCCcCc
Confidence 44432 45688889887665544321 123333444 345666543 332 23334 3555443
Q ss_pred --EEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCC
Q 015650 296 --EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (403)
Q Consensus 296 --~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~ 339 (403)
.+.- .....++++ ...+|+..+. +.|.||++.+++...
T Consensus 222 ~~~i~W---~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 222 KSTIQW---SSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred ccEEEc---CCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEE
Confidence 3332 235566666 3457877765 459999999998533
No 356
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.78 E-value=0.026 Score=50.62 Aligned_cols=224 Identities=13% Similarity=0.077 Sum_probs=100.7
Q ss_pred CCCEEEEEc--CCcEEEEEcC--CCeeEEEEeccc---Ccc---eeEEEEeeeCCeEEEeeCCCC-CCCCCceEEEEECC
Q 015650 96 DHGCFAAGT--DHGFRIYNCD--PFREIFRRDFER---GGG---IGVVEMLFRCNILALVGGGPD-PQYPLNKVMIWDDH 164 (403)
Q Consensus 96 d~~~l~~~~--~~~i~iw~~~--~~~~~~~~~~~~---~~~---~~v~~~~~~~~~~~~~s~~~d-~~~~~~~i~iwd~~ 164 (403)
+.++|+..+ .+.|.|+|+. ..+..+.+.++. ... ..-....--+++..++++-.+ .....|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 457787777 4449999986 334445455541 001 111222223456444432111 11233678888877
Q ss_pred CCceeEEEec----CCceeEEEEecCceEEEe-----------------------cCeEEEEEcCCceeeeEeeccCCCc
Q 015650 165 QSRCIGELSF----RSEVRSVKLRRDRIIVVL-----------------------EQKIFVYNFADLKLLHQIETIANPK 217 (403)
Q Consensus 165 ~~~~~~~~~~----~~~i~~~~~~~~~~~~~~-----------------------d~~i~i~d~~~~~~~~~~~~~~~~~ 217 (403)
+.+.....+. ..--..+-+.|....+++ ..++.+||+.+.+.++++.......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 7777766652 222345666776555541 3589999999999999987654332
Q ss_pred --eeEEEeeCCC--eEEEEeeCCccCeEEEEEc-cCC-----ceeEEeec-----------------CCceEEEEEcCCC
Q 015650 218 --GLCAVSQGVG--SLVLVCPGLQKGQVRVEHY-ASK-----RTKFIMAH-----------------DSRIACFALTQDG 270 (403)
Q Consensus 218 --~~~~~~~~~~--~~~~~~~g~~d~~i~v~d~-~~~-----~~~~~~~~-----------------~~~i~~~~~sp~g 270 (403)
-.+.|..+++ .-++.++ -...|..|-- +.+ ++..+... ..-|+.|.+|.|.
T Consensus 246 ~pLEvRflH~P~~~~gFvg~a--Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCA--LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE----EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred ceEEEEecCCCCccceEEEEe--ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 2355554443 3344443 2344444432 332 22222111 2447899999999
Q ss_pred CEEEEEeC-CCcEEEEEEcCCCc---EEEEEecCC--------------CcccEEEEEeCCCCCEEEEEe
Q 015650 271 QLLATSST-KGTLVRIFNTLDGT---LLQEVRRGA--------------DRAEIYSLAFSSNAQWLAVSS 322 (403)
Q Consensus 271 ~~l~s~~~-dg~~i~iwd~~~~~---~~~~~~~~~--------------~~~~v~~l~~s~d~~~l~s~~ 322 (403)
++|+.++. .|. |+.||+.+-. +...+..+. -.+...-|..|-||+.|....
T Consensus 324 rfLYvs~W~~Gd-vrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 324 RFLYVSNWLHGD-VRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -EEEEEETTTTE-EEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred CEEEEEcccCCc-EEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 99987776 666 9999998643 333332110 112346788999999887653
No 357
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.76 E-value=0.018 Score=48.24 Aligned_cols=238 Identities=17% Similarity=0.140 Sum_probs=133.5
Q ss_pred CeEEEEEcCCCC-EEEEEcC-Cc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650 87 TLLHISFNQDHG-CFAAGTD-HG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (403)
Q Consensus 87 ~i~~i~~s~d~~-~l~~~~~-~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~ 163 (403)
.-..|+|+|.-. -++.+-. ++ ..++|....+......-. ...--.-.=.|++++.+|+....|..-..|.|-|||.
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~-~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ-EGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc-cCceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence 345677888653 4555553 33 788888766554322221 1111222335899999999888876666699999998
Q ss_pred CCC-ceeEEEe-cCCceeEEEEecCceEEE-ecCeEEE--------------------EEcCCceeeeEee----ccCCC
Q 015650 164 HQS-RCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFV--------------------YNFADLKLLHQIE----TIANP 216 (403)
Q Consensus 164 ~~~-~~~~~~~-~~~~i~~~~~~~~~~~~~-~d~~i~i--------------------~d~~~~~~~~~~~----~~~~~ 216 (403)
..+ +.+.++. |.-....+.+.+||+.++ .+|-|.. .|..+|+++.+.. .+...
T Consensus 148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS 227 (366)
T COG3490 148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS 227 (366)
T ss_pred ccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc
Confidence 754 5566666 777788999999999888 5554443 3434444433221 11222
Q ss_pred ceeEEEeeCCCeEEEEee--CC-ccCeEEEEE-ccCCceeEEe-------ecCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 015650 217 KGLCAVSQGVGSLVLVCP--GL-QKGQVRVEH-YASKRTKFIM-------AHDSRIACFALTQDGQLLATSSTKGTLVRI 285 (403)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~--g~-~d~~i~v~d-~~~~~~~~~~-------~~~~~i~~~~~sp~g~~l~s~~~dg~~i~i 285 (403)
+..+....++. +++.+. |. +|---.+=- .+++.+..+. .....|-+|+.+.+..+++..+-.|+...+
T Consensus 228 iRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi 306 (366)
T COG3490 228 IRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI 306 (366)
T ss_pred eeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence 33344444432 112210 00 000000000 0111222221 123467788888767777766777765889
Q ss_pred EEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEe
Q 015650 286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL 332 (403)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~ 332 (403)
||..+|..+...... .+..++ +...-+++.+.+|.+.++.-
T Consensus 307 ~da~tG~vv~~a~l~----daaGva--~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 307 WDAATGAVVSEAALP----DAAGVA--AAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred EEcCCCcEEeccccc----ccccce--eccCceEEecCCceEEeccc
Confidence 999999987654421 222333 34445666777898888843
No 358
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.00014 Score=67.50 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=82.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650 259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (403)
Q Consensus 259 ~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~ 338 (403)
..+.--+++..+++|+.|+.-|. |++|+-..++.. .++.....+.+..+..+++..++|.|+..|.|.++-++...+.
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~-lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGS-VYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred ceEEEEEeecCCceEEEecccce-EEEEecCchhhh-cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34444566778999999999999 999996555543 3433223356777888999999999999999999999885431
Q ss_pred CCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 339 ARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
... ++... -+-|...|++++|++|+..|++|..-|.
T Consensus 112 ~~~------------------------~~t~~-----d~~~~~rVTal~Ws~~~~k~ysGD~~Gk 147 (726)
T KOG3621|consen 112 DLD------------------------YVTPC-----DKSHKCRVTALEWSKNGMKLYSGDSQGK 147 (726)
T ss_pred cce------------------------eeccc-----cccCCceEEEEEecccccEEeecCCCce
Confidence 111 11110 1226678999999999999999998874
No 359
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.71 E-value=0.0035 Score=60.01 Aligned_cols=138 Identities=12% Similarity=0.074 Sum_probs=76.7
Q ss_pred EEEecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEee---CCcc--CeEEEEEccCCceeEEeecCCceEE
Q 015650 189 IVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP---GLQK--GQVRVEHYASKRTKFIMAHDSRIAC 263 (403)
Q Consensus 189 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~d--~~i~v~d~~~~~~~~~~~~~~~i~~ 263 (403)
+.+.+|.+.-.+-..-..+....+....+...+++++++...++.. ...| ..|.+++..... ..+.. ....+.
T Consensus 324 ~~v~~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-g~~~t~ 401 (591)
T PRK13616 324 HALVDGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-GHSLTR 401 (591)
T ss_pred eEEECCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-CCCCCC
Confidence 3335666655442222222222122235567889999987655542 1123 345555653333 33322 223788
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEE-----------EcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEe
Q 015650 264 FALTQDGQLLATSSTKGTLVRIF-----------NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL 332 (403)
Q Consensus 264 ~~~sp~g~~l~s~~~dg~~i~iw-----------d~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~ 332 (403)
-.|+|||+.|++.......+++. ++..++... . ....|..+.|||||..|+... +|.|++=-+
T Consensus 402 PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~---~~g~Issl~wSpDG~RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 402 PSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--R---VPGPISELQLSRDGVRAAMII-GGKVYLAVV 475 (591)
T ss_pred ceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--c---cCCCcCeEEECCCCCEEEEEE-CCEEEEEEE
Confidence 89999999888775432213333 333332222 1 235799999999999988766 577777444
Q ss_pred ec
Q 015650 333 KV 334 (403)
Q Consensus 333 ~~ 334 (403)
..
T Consensus 476 vr 477 (591)
T PRK13616 476 EQ 477 (591)
T ss_pred Ee
Confidence 33
No 360
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.69 E-value=1.2e-05 Score=73.35 Aligned_cols=194 Identities=13% Similarity=0.221 Sum_probs=117.2
Q ss_pred EEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCcee-EEEe--cCCceeEEEEec-CceEEE-------ecCeEEEEE
Q 015650 132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI-GELS--FRSEVRSVKLRR-DRIIVV-------LEQKIFVYN 200 (403)
Q Consensus 132 v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~-~~~~--~~~~i~~~~~~~-~~~~~~-------~d~~i~i~d 200 (403)
+.+..+..+...++.|..+ |.|.+-.++...-. .++. +....++++|++ |...++ .|..+.|||
T Consensus 61 cva~~y~~d~cIlavG~at-----G~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 61 CVASFYGNDRCILAVGSAT-----GNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred eehhhcCCchhhhhhcccc-----CceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3333344454566666666 88888877655332 3333 677889999998 444444 367899999
Q ss_pred cCCc--eee--eEeec-cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcC-CCCEEE
Q 015650 201 FADL--KLL--HQIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQ-DGQLLA 274 (403)
Q Consensus 201 ~~~~--~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~ 274 (403)
+.++ .+. ..|.+ .......+++-.+ ..++. +|.....+.++|++........-....+..+..+| .+.|++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd--~klvl-aGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRD--TKLVL-AGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred cccccCCCccccccccccccCccccccccC--cchhh-cccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCcee
Confidence 9875 221 12222 2233345666633 22333 46677899999998644433333344567778888 778887
Q ss_pred EEeCCCcEEEEEEc-CCCc-EEEEEecCC--CcccEEEEEeCCCCC-EEEEEe-CCCcEEEEEeecC
Q 015650 275 TSSTKGTLVRIFNT-LDGT-LLQEVRRGA--DRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVN 335 (403)
Q Consensus 275 s~~~dg~~i~iwd~-~~~~-~~~~~~~~~--~~~~v~~l~~s~d~~-~l~s~~-~dg~v~iwd~~~~ 335 (403)
+-. ||. |.+||. .+-+ ++..+.... ....+..++|.|... .+++.. ..++|+++++..-
T Consensus 213 s~~-dg~-iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 213 SNS-DGD-IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred ccc-cCc-eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 655 888 999993 3222 222222100 112489999999654 445554 6678999998654
No 361
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.63 E-value=0.0067 Score=43.30 Aligned_cols=65 Identities=23% Similarity=0.390 Sum_probs=49.3
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEe
Q 015650 261 IACFALTQ---DG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL 332 (403)
Q Consensus 261 i~~~~~sp---~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~ 332 (403)
|++|++.. || +.|++|+.|.. |++|+ ..+.+.++. ....|+++.-... ..++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~--~~e~~~Ei~---e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFE-IRVFK--GDEIVAEIT---ETDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcE-EEEEe--CCcEEEEEe---cccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 55666554 33 57889999999 99997 457777777 3468888887766 66888889999988865
No 362
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00023 Score=61.63 Aligned_cols=93 Identities=16% Similarity=0.250 Sum_probs=74.1
Q ss_pred EEEEEccC-CceeEEeecCCceEEEEEcCCCC-EEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCC-E
Q 015650 241 VRVEHYAS-KRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-W 317 (403)
Q Consensus 241 i~v~d~~~-~~~~~~~~~~~~i~~~~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~-~ 317 (403)
+++.+..+ +....+..+...|..++|+|..+ +|..++.+.. |+|.|+++...+..+.. + ..+++++|.-|.. +
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nk-iki~dlet~~~vssy~a--~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNK-IKIMDLETSCVVSSYIA--Y-NQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCce-EEEEecccceeeeheec--c-CCceeeeeccCCcce
Confidence 44444333 33445667888999999999877 6778888888 99999999999888885 3 7899999998776 5
Q ss_pred EEEEeCCCcEEEEEeecCCC
Q 015650 318 LAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 318 l~s~~~dg~v~iwd~~~~~~ 337 (403)
|..|-..|.|.|||++..+.
T Consensus 251 IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred eEEeccCceEEEEEccCCCc
Confidence 66677899999999998775
No 363
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.60 E-value=0.024 Score=48.37 Aligned_cols=119 Identities=20% Similarity=0.158 Sum_probs=75.4
Q ss_pred CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEE-cCCCcEE
Q 015650 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN-TLDGTLL 294 (403)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd-~~~~~~~ 294 (403)
.+...+++++++.+.++..+.....++++.........+. ...+....|++++...+....+.. .+++. ..+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~-~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGG-VRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCCEEEEEcCCCc-eEEEEecCCCcce
Confidence 5678899999987666552233445666655443333332 336788899999887776665665 66663 3333322
Q ss_pred -EEEecCCCcccEEEEEeCCCCCEEEEEe---CCCcEEEEEeecCCC
Q 015650 295 -QEVRRGADRAEIYSLAFSSNAQWLAVSS---DKGTVHVFNLKVNSG 337 (403)
Q Consensus 295 -~~~~~~~~~~~v~~l~~s~d~~~l~s~~---~dg~v~iwd~~~~~~ 337 (403)
..+........|..+.+||||..+|... .++.|++=-+.....
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~ 148 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGD 148 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCC
Confidence 2222211112899999999999887665 467888888776553
No 364
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.58 E-value=0.00029 Score=39.67 Aligned_cols=38 Identities=32% Similarity=0.639 Sum_probs=32.0
Q ss_pred cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650 292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (403)
Q Consensus 292 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd 331 (403)
+++..+.. |...|.++.|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKG--HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEe--cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44555554 667899999999999999999999999996
No 365
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.002 Score=58.19 Aligned_cols=135 Identities=15% Similarity=0.301 Sum_probs=93.5
Q ss_pred CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe----eCCccCeEEEEEccCCce---eEEeec----CCceE
Q 015650 194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC----PGLQKGQVRVEHYASKRT---KFIMAH----DSRIA 262 (403)
Q Consensus 194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~d~~i~v~d~~~~~~---~~~~~~----~~~i~ 262 (403)
..++-.|++.|+.+.+++.+.. |..+.+.|+.+.--+.. .|-.+..|.-||.+-.-. ...+.| .....
T Consensus 356 ~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFs 434 (644)
T KOG2395|consen 356 DKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFS 434 (644)
T ss_pred CcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccc
Confidence 4688899999999999887665 77777777654322211 144688899999886322 222333 23456
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650 263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (403)
Q Consensus 263 ~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~ 334 (403)
|.+-..+| +++.|+.+|. |++||- .+..-++.-.+ ...+|..|..+.||++|+..+ +..+.+.++.-
T Consensus 435 c~aTT~sG-~IvvgS~~Gd-IRLYdr-i~~~AKTAlPg-LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~~ 501 (644)
T KOG2395|consen 435 CFATTESG-YIVVGSLKGD-IRLYDR-IGRRAKTALPG-LGDAIKHVDVTADGKWILATC-KTYLLLIDTLI 501 (644)
T ss_pred eeeecCCc-eEEEeecCCc-EEeehh-hhhhhhhcccc-cCCceeeEEeeccCcEEEEec-ccEEEEEEEec
Confidence 66666566 7889999999 999996 55544444332 457999999999999987665 55777777643
No 366
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.53 E-value=0.059 Score=47.93 Aligned_cols=242 Identities=14% Similarity=0.146 Sum_probs=118.1
Q ss_pred EEEEcCCCCEEEEE-cCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCC---CCC-------------
Q 015650 90 HISFNQDHGCFAAG-TDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP---DPQ------------- 152 (403)
Q Consensus 90 ~i~~s~d~~~l~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~---d~~------------- 152 (403)
...++++.+.++.. ..+.|+-.|+++.+......+. ..-...-.+..+.++..++.... +-.
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p-~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~ 163 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP-DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE 163 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC-cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence 34567888887655 4556888888888776555554 22222223333334433332111 100
Q ss_pred -CCCceEEEEECCCCceeEEEecCCceeEEEEecCc-eEEEe---------cCeEEEEEcCCceeeeEeeccC--CCcee
Q 015650 153 -YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-IIVVL---------EQKIFVYNFADLKLLHQIETIA--NPKGL 219 (403)
Q Consensus 153 -~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~---------d~~i~i~d~~~~~~~~~~~~~~--~~~~~ 219 (403)
-+...|.-.|+.+|+....+.....+..+.|+|.. .+++. |..|.+.+.. +...+.+..+. ..+..
T Consensus 164 a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gH 242 (386)
T PF14583_consen 164 ARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGH 242 (386)
T ss_dssp C---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEE
T ss_pred hCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCccccc
Confidence 02256777788998887777777888899999953 33331 3345444532 33333333222 22344
Q ss_pred EEEeeCCCeEEEEe--eCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCC----------------c
Q 015650 220 CAVSQGVGSLVLVC--PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG----------------T 281 (403)
Q Consensus 220 ~~~~~~~~~~~~~~--~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg----------------~ 281 (403)
--|.++|..++... .+..+..|.-+|+.+.....+..- .....+..++||++++-=+.|. -
T Consensus 243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~ 321 (386)
T PF14583_consen 243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPW 321 (386)
T ss_dssp EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------E
T ss_pred ccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcE
Confidence 56788888776643 333456677788887655444322 2455667788999887533331 3
Q ss_pred EEEEEEcCCCcEEEEEecCC--------C-cccEEEEEeCCCCCEEEEEe-CCCcEEEEEeecCC
Q 015650 282 LVRIFNTLDGTLLQEVRRGA--------D-RAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNS 336 (403)
Q Consensus 282 ~i~iwd~~~~~~~~~~~~~~--------~-~~~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~~~ 336 (403)
|++++++.++...... +. + ...=....|+|||++++-.| ..|...||-++-++
T Consensus 322 -i~~~~~~~~~~~~l~~-h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~~ 384 (386)
T PF14583_consen 322 -IYLFDVEAGRFRKLAR-HDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIPD 384 (386)
T ss_dssp -EEEEETTTTEEEEEEE--------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--C
T ss_pred -EEEeccccCceeeeee-ccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCcc
Confidence 6678887766532222 10 0 00124578999999876554 78888888766543
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.50 E-value=0.082 Score=48.97 Aligned_cols=200 Identities=10% Similarity=0.106 Sum_probs=106.6
Q ss_pred eEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-e-------------cCeE
Q 015650 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L-------------EQKI 196 (403)
Q Consensus 131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~-------------d~~i 196 (403)
.+..+.+++++..++-+-+...-....|+++|+.+|+.+...-.......+.|.+|+..++ . ...|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3346677887765542211000011579999999997765432222223499999976655 1 2248
Q ss_pred EEEEcCCcee--eeEeeccCCC--ceeEEEeeCCCeEEEEeeCCcc-CeEEEEEccCC-----ceeEEeecCCceEEEEE
Q 015650 197 FVYNFADLKL--LHQIETIANP--KGLCAVSQGVGSLVLVCPGLQK-GQVRVEHYASK-----RTKFIMAHDSRIACFAL 266 (403)
Q Consensus 197 ~i~d~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~d-~~i~v~d~~~~-----~~~~~~~~~~~i~~~~~ 266 (403)
+.|.+.+... ...+...... ...+..+.+++.+++.+....+ ..+.+.++... ....+..+...+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 8888877533 2344443333 3456778888877766544455 67888888764 45555555544444333
Q ss_pred cCCCCEEEEEeC---CCcEEEEEEcCCCc---EEEEEecCCCcccEEEEEeCCCCCEEEE-EeCCC--cEEEEEee
Q 015650 267 TQDGQLLATSST---KGTLVRIFNTLDGT---LLQEVRRGADRAEIYSLAFSSNAQWLAV-SSDKG--TVHVFNLK 333 (403)
Q Consensus 267 sp~g~~l~s~~~---dg~~i~iwd~~~~~---~~~~~~~~~~~~~v~~l~~s~d~~~l~s-~~~dg--~v~iwd~~ 333 (403)
+..+.+++.... ++. |.-.++.+.. ....+..+.....+..+.. .+.+|+. .-.++ .|+++++.
T Consensus 285 ~~~~~~yi~Tn~~a~~~~-l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGR-LVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EETTEEEEEE-TT-TT-E-EEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred ccCCEEEEeeCCCCCCcE-EEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 334444443322 345 6666777654 2223333212224555555 4445544 44454 47777777
No 368
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.48 E-value=0.13 Score=50.63 Aligned_cols=229 Identities=13% Similarity=0.198 Sum_probs=137.7
Q ss_pred CEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEee-CCCC--------CCCCCceEEEEECCCCce
Q 015650 98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVG-GGPD--------PQYPLNKVMIWDDHQSRC 168 (403)
Q Consensus 98 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s-~~~d--------~~~~~~~i~iwd~~~~~~ 168 (403)
..|+.+..+.+++.-++.-+++..+++. -......+++.+....+.. ..+- +.+.-..++++|-++.+.
T Consensus 685 d~l~~~~~~~l~i~tid~iqkl~irtvp--l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 685 DSLASANGGALTIGTIDEIQKLHIRTVP--LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred ceEEEecCCceEEEEecchhhcceeeec--CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 3466666666888887777666666654 4455566667653333222 2111 011124577777777666
Q ss_pred eEEEec--CC---ceeEEEEecC-ceEEE--e-----------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650 169 IGELSF--RS---EVRSVKLRRD-RIIVV--L-----------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (403)
Q Consensus 169 ~~~~~~--~~---~i~~~~~~~~-~~~~~--~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (403)
+...+. .+ .|.++.|..| +.+++ + .|.|.+|....++.++.+..+.-.-...++..-. +.
T Consensus 763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fn-gk 841 (1096)
T KOG1897|consen 763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFN-GK 841 (1096)
T ss_pred EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhC-Ce
Confidence 655542 22 3445558776 44444 1 5788888877644444433222222233333322 23
Q ss_pred EEEeeCCccCeEEEEEccCC-ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC--CCcEEEEEecCCCcccE
Q 015650 230 VLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL--DGTLLQEVRRGADRAEI 306 (403)
Q Consensus 230 ~~~~~g~~d~~i~v~d~~~~-~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~--~~~~~~~~~~~~~~~~v 306 (403)
++|. -+..|++|++.++ +++.-..+..++..+.+.-.|..++.|.--+. +.+.-.+ .|......+ .-+..++
T Consensus 842 llA~---In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~eg~f~evAr-D~~p~Wm 916 (1096)
T KOG1897|consen 842 LLAG---INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGDEGNFEEVAR-DYNPNWM 916 (1096)
T ss_pred EEEe---cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEeccCCceEEeeh-hhCccce
Confidence 5554 4579999999987 44555567888999999889999999988777 6665443 333443333 3366788
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650 307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (403)
Q Consensus 307 ~~l~~s~d~~~l~s~~~dg~v~iwd~~~~ 335 (403)
+++.+-.+ ..++.+..+|.+++-..++.
T Consensus 917 taveil~~-d~ylgae~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 917 TAVEILDD-DTYLGAENSGNLFTVRKDSD 944 (1096)
T ss_pred eeEEEecC-ceEEeecccccEEEEEecCC
Confidence 88888644 45556667888888877643
No 369
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00066 Score=62.36 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=73.1
Q ss_pred CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceE-EEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEE
Q 015650 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIA-CFALTQDGQLLATSSTKGTLVRIFNTLDGTLL 294 (403)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~-~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~ 294 (403)
.+..+.|+|.-+ ++|. +..+|.|.+..+.-.++..+.-|+..++ +++|.|||+.||.|-.||+ |++-|++++..+
T Consensus 22 ~i~~~ewnP~~d--LiA~-~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~~~l 97 (665)
T KOG4640|consen 22 NIKRIEWNPKMD--LIAT-RTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKGGRL 97 (665)
T ss_pred ceEEEEEcCccc--hhhe-eccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCCCce
Confidence 345667777665 4444 3478999999998888888887777777 9999999999999999999 999999999888
Q ss_pred EEEecCCCcccEEEEEeCC
Q 015650 295 QEVRRGADRAEIYSLAFSS 313 (403)
Q Consensus 295 ~~~~~~~~~~~v~~l~~s~ 313 (403)
..+... -...|.++-|++
T Consensus 98 ~~~~~s-~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFS-VETDISKGIWDR 115 (665)
T ss_pred eccccc-cccchheeeccc
Confidence 774321 346788888863
No 370
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00072 Score=62.12 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=67.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEE-EEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY-SLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 258 ~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~-~l~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
...+.-+.|+|.-.+||.+..+|. |-+..+. .+.+.++.. +...++ +++|.|||+.||+|-.||+|++-|+.++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~ge-lli~R~n-~qRlwtip~--p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGE-LLIHRLN-WQRLWTIPI--PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCc-EEEEEec-cceeEeccC--CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 345778899999999999999999 9999876 777777774 334555 99999999999999999999999999998
Q ss_pred CCCC
Q 015650 337 GSAR 340 (403)
Q Consensus 337 ~~~~ 340 (403)
.+..
T Consensus 96 ~l~~ 99 (665)
T KOG4640|consen 96 RLVS 99 (665)
T ss_pred ceec
Confidence 7655
No 371
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.39 E-value=0.00052 Score=38.54 Aligned_cols=35 Identities=29% Similarity=0.629 Sum_probs=31.1
Q ss_pred eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEE
Q 015650 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (403)
Q Consensus 252 ~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd 287 (403)
..+..|...|.++.|.+++.++++++.|+. +++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence 445678889999999999999999999999 99996
No 372
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.0011 Score=64.61 Aligned_cols=99 Identities=18% Similarity=0.275 Sum_probs=71.8
Q ss_pred CCccCeEEEEEccCCce--eEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc-ccEEEEEe
Q 015650 235 GLQKGQVRVEHYASKRT--KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-AEIYSLAF 311 (403)
Q Consensus 235 g~~d~~i~v~d~~~~~~--~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~-~~v~~l~~ 311 (403)
|+..|.+...|+++... ..-..-.++|++++|+.+|++++.|-.+|. |.+||+..++.++.+..+.++ ..|.-+.+
T Consensus 105 ~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~ 183 (1206)
T KOG2079|consen 105 GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVITEHGAPVTGVIFVGR 183 (1206)
T ss_pred EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeeeeecCCccceEEEEEE
Confidence 44668888888776422 222234578999999999999999999999 999999999998888764332 23444555
Q ss_pred CCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 312 SSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 312 s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
..++..++++...|. +|.+.-.+
T Consensus 184 t~~nS~llt~D~~Gs--f~~lv~nk 206 (1206)
T KOG2079|consen 184 TSQNSKLLTSDTGGS--FWKLVFNK 206 (1206)
T ss_pred eCCCcEEEEccCCCc--eEEEEech
Confidence 566777888877776 67765444
No 373
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.32 E-value=0.023 Score=40.65 Aligned_cols=92 Identities=14% Similarity=0.163 Sum_probs=60.5
Q ss_pred EEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE--ecCeEEEEEcCCceeeeEeeccCCCcee
Q 015650 142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGL 219 (403)
Q Consensus 142 ~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 219 (403)
..|+.++.| ..|++|+ ..+.+.++.-.+.|..+.-...+++.+ .+|+|-+|+- .+.+..++.....+..
T Consensus 16 ~eLlvGs~D-----~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~ 86 (111)
T PF14783_consen 16 NELLVGSDD-----FEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSM 86 (111)
T ss_pred ceEEEecCC-----cEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEE
Confidence 456667777 8999997 457888888888899998888877766 5999999984 3445555554444444
Q ss_pred EEEeeCCCeEEEEeeCCccCeEE
Q 015650 220 CAVSQGVGSLVLVCPGLQKGQVR 242 (403)
Q Consensus 220 ~~~~~~~~~~~~~~~g~~d~~i~ 242 (403)
..+..++++..=...|-.+|.|-
T Consensus 87 ~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 87 AFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEcCCCCCceEEEEEecCCeEE
Confidence 44444443322112244666654
No 374
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.31 E-value=0.073 Score=44.06 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=23.4
Q ss_pred EEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEEec
Q 015650 92 SFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDF 124 (403)
Q Consensus 92 ~~s~d~~~l~~~~-~~~i~iw~~~~~~~~~~~~~ 124 (403)
...+++.++.+|+ |+.....|..+...++....
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 4567888888888 44488888887777755433
No 375
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.28 E-value=0.078 Score=43.87 Aligned_cols=140 Identities=11% Similarity=0.033 Sum_probs=89.4
Q ss_pred CCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecC
Q 015650 97 HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR 175 (403)
Q Consensus 97 ~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~ 175 (403)
..+++.|+..+ +.--|..+++...+..+. .......+. -.| +++-+... |.+++.+.++|..+..+.-.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgd--fVV~GCy~-----g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGD--FVVLGCYS-----GGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECC--EEEEEEcc-----CcEEEEEecchhheeeeeeh
Confidence 34566666444 677777777777665553 333333333 222 35555555 89999999999888888754
Q ss_pred CceeE-EEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC
Q 015650 176 SEVRS-VKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK 249 (403)
Q Consensus 176 ~~i~~-~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~ 249 (403)
+.|.. ....+++.++. -|++.+..|.++..++...+........-++.+....+|++..+ |.+.--.....
T Consensus 93 ~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~---G~vlavt~~~~ 167 (354)
T KOG4649|consen 93 ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITA---GAVLAVTKNPY 167 (354)
T ss_pred hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEecc---ceEEEEccCCC
Confidence 54443 33455666555 49999999999988888776555544556677766677777633 55544444443
No 376
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.28 E-value=0.00082 Score=63.88 Aligned_cols=116 Identities=14% Similarity=0.142 Sum_probs=81.4
Q ss_pred eeEEEeeCCCeEEEEe-eCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEE
Q 015650 218 GLCAVSQGVGSLVLVC-PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (403)
Q Consensus 218 ~~~~~~~~~~~~~~~~-~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~ 296 (403)
....|+|...-+.+++ +....|.|.||--.+. ...-....-.+++++|+|..-.|+.|-.-|. +.+|...+.+. .+
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGE-Pqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~-~~v~~~~~~e~-ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGE-PQRDVTYPVHATSLCWHPEEFVLAQGWEMGV-SDVQKTNTTET-HT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEecCCC-CCcccccceehhhhccChHHHHHhhccccce-eEEEecCCcee-ee
Confidence 4566777666554444 2234577888743332 2211111223567999999988999888888 99998765544 33
Q ss_pred EecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 297 ~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
+.. .|..+|..+.||++|..|+++..-|.|.+|.++....
T Consensus 96 v~~-th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~ 135 (1416)
T KOG3617|consen 96 VVE-THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGE 135 (1416)
T ss_pred ecc-CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccc
Confidence 333 3889999999999999999999999999999985443
No 377
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.27 E-value=0.089 Score=44.29 Aligned_cols=182 Identities=8% Similarity=0.053 Sum_probs=110.7
Q ss_pred CCCeEEEEEcCCCCEEEEEc-CCc--EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEE
Q 015650 85 PPTLLHISFNQDHGCFAAGT-DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (403)
Q Consensus 85 ~~~i~~i~~s~d~~~l~~~~-~~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iw 161 (403)
..-...+.|..+|.++-+.+ .+. |+.+|+++++......+. ...---.+....+.++..+.-. +...+|
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~--~~~FgEGit~~~d~l~qLTWk~------~~~f~y 115 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP--PRYFGEGITILGDKLYQLTWKE------GTGFVY 115 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T--TT--EEEEEEETTEEEEEESSS------SEEEEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC--ccccceeEEEECCEEEEEEecC------CeEEEE
Confidence 34456788877887776655 332 999999998877666665 4444455666678888888765 799999
Q ss_pred ECCCCceeEEEecCCceeEEEEecCceEEEecC--eEEEEEcCCceeeeEeeccCC-----CceeEEEeeCCCeEEEEee
Q 015650 162 DDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQ--KIFVYNFADLKLLHQIETIAN-----PKGLCAVSQGVGSLVLVCP 234 (403)
Q Consensus 162 d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 234 (403)
|..+.+.+.++.....=..++. .+..++.+|| .++.+|..+.+..+.+..... .+.-+.+. ++ . +.|-.
T Consensus 116 d~~tl~~~~~~~y~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G-~-IyANV 191 (264)
T PF05096_consen 116 DPNTLKKIGTFPYPGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG-K-IYANV 191 (264)
T ss_dssp ETTTTEEEEEEE-SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT-E-EEEEE
T ss_pred ccccceEEEEEecCCcceEEEc-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC-E-EEEEe
Confidence 9999999999987777777773 3344555776 688889888777766654322 12223333 22 2 22321
Q ss_pred CCccCeEEEEEccCCceeEEe----------------ecCCceEEEEEcCCCCEEEEEeCC
Q 015650 235 GLQKGQVRVEHYASKRTKFIM----------------AHDSRIACFALTQDGQLLATSSTK 279 (403)
Q Consensus 235 g~~d~~i~v~d~~~~~~~~~~----------------~~~~~i~~~~~sp~g~~l~s~~~d 279 (403)
-....|...|..++.+.... ....-.+.|+++|....|...+..
T Consensus 192 -W~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 192 -WQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp -TTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred -CCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 23456667777776654421 013457899999977766655543
No 378
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.26 E-value=0.02 Score=54.96 Aligned_cols=152 Identities=19% Similarity=0.194 Sum_probs=91.1
Q ss_pred ceeEEEEecCceEEE--e-------cC--eEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeC---------C
Q 015650 177 EVRSVKLRRDRIIVV--L-------EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG---------L 236 (403)
Q Consensus 177 ~i~~~~~~~~~~~~~--~-------d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---------~ 236 (403)
.+...+++|||..++ . |. .|++++. .+.. ..+.. ......-.|+|+++.++++..+ .
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 567889999998877 2 22 5666664 2332 33322 2236778899998866665422 1
Q ss_pred ccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEE---EEcCCCcE-E---EEEecCCCcccEEEE
Q 015650 237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI---FNTLDGTL-L---QEVRRGADRAEIYSL 309 (403)
Q Consensus 237 ~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~i---wd~~~~~~-~---~~~~~~~~~~~v~~l 309 (403)
..+.+.+.+++.+.... ...+.|..+.|||||..|+... ++. |++ -....|+. + ..+... ....+.++
T Consensus 428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~-v~Va~Vvr~~~G~~~l~~~~~l~~~-l~~~~~~l 502 (591)
T PRK13616 428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGK-VYLAVVEQTEDGQYALTNPREVGPG-LGDTAVSL 502 (591)
T ss_pred CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCE-EEEEEEEeCCCCceeecccEEeecc-cCCccccc
Confidence 22344444554443332 3356799999999999998766 466 777 44445541 1 112211 22346889
Q ss_pred EeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650 310 AFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 310 ~~s~d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
.|..++.++ ++..++.-.+|.+.-...
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~vDG~ 529 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVNLDGS 529 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEecCCc
Confidence 999998855 555556566777665543
No 379
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.25 E-value=4.2e-05 Score=69.99 Aligned_cols=164 Identities=14% Similarity=0.113 Sum_probs=104.3
Q ss_pred cccCCCCCCeEEEEEcC-CCCEEEEEcCC-----cEEEEEcCCC--eeEEEEecccCcceeEEEEeeeCCeEEEeeCCCC
Q 015650 79 STSSSPPPTLLHISFNQ-DHGCFAAGTDH-----GFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~-d~~~l~~~~~~-----~i~iw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d 150 (403)
++..+|....++++|++ |...||+|-+. .+.|||+.+. ...-...+..+......+++|..+...+.+|...
T Consensus 96 E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~s 175 (783)
T KOG1008|consen 96 EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTS 175 (783)
T ss_pred eecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhccccc
Confidence 45566778889999987 56788888532 3999999765 1111122221122334467777777777777665
Q ss_pred CCCCCceEEEEECCCCceeEEEecCCceeEEEEec-CceEEE--ecCeEEEEE-cCC-ceeeeEeeccC----CCceeEE
Q 015650 151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-DRIIVV--LEQKIFVYN-FAD-LKLLHQIETIA----NPKGLCA 221 (403)
Q Consensus 151 ~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~--~d~~i~i~d-~~~-~~~~~~~~~~~----~~~~~~~ 221 (403)
..+.++|++........-....+..+...| .+.+++ .|+.|-+|| .+. ..++..+.... ..+..++
T Consensus 176 -----r~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~a 250 (783)
T KOG1008|consen 176 -----RSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALA 250 (783)
T ss_pred -----chhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEE
Confidence 789999987432222111344667788888 667777 699999999 333 22233332222 2367889
Q ss_pred EeeCCCeEEEEeeCCccCeEEEEEccC
Q 015650 222 VSQGVGSLVLVCPGLQKGQVRVEHYAS 248 (403)
Q Consensus 222 ~~~~~~~~~~~~~g~~d~~i~v~d~~~ 248 (403)
|.|...+++.++ ....++|+++|+..
T Consensus 251 ycPtrtglla~l-~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 251 YCPTRTGLLAVL-SRDSITIRLYDICV 276 (783)
T ss_pred eccCCcchhhhh-ccCcceEEEecccc
Confidence 999877765554 44778999999865
No 380
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.0078 Score=54.55 Aligned_cols=139 Identities=18% Similarity=0.302 Sum_probs=90.7
Q ss_pred eEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCc---------eEEE-ecCeEEEEEcCCc-e-eee
Q 015650 141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR---------IIVV-LEQKIFVYNFADL-K-LLH 208 (403)
Q Consensus 141 ~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~-~d~~i~i~d~~~~-~-~~~ 208 (403)
...+.++... ..++-.|++.|+.+.+.+....|.-+.+.|+. .++. .++.|.-||.+-. . .+.
T Consensus 346 nlil~~~~~~-----~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 346 NLILMDGGEQ-----DKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred ceEeeCCCCc-----CcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence 3445555554 77889999999999999965567777787764 3333 5889999998742 2 121
Q ss_pred Eeecc--CCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 015650 209 QIETI--ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI 285 (403)
Q Consensus 209 ~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~i 285 (403)
..+.+ ......-|+...+++. ++. |+.+|.|++||--..+ ...+.+-..+|..+..+.+|++|+..|. .. +.+
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG~-Ivv-gS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-ty-LlL 496 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESGY-IVV-GSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TY-LLL 496 (644)
T ss_pred eeeccccccccccceeeecCCce-EEE-eecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cE-EEE
Confidence 11221 1111222333333443 443 4689999999974433 3456788899999999999999876654 44 666
Q ss_pred EEc
Q 015650 286 FNT 288 (403)
Q Consensus 286 wd~ 288 (403)
-++
T Consensus 497 i~t 499 (644)
T KOG2395|consen 497 IDT 499 (644)
T ss_pred EEE
Confidence 654
No 381
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.17 E-value=0.12 Score=43.64 Aligned_cols=190 Identities=11% Similarity=0.113 Sum_probs=114.4
Q ss_pred EecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCc--eeEEEEecCceEEE--ecCeEE
Q 015650 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSE--VRSVKLRRDRIIVV--LEQKIF 197 (403)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~--~d~~i~ 197 (403)
..+......-...+.|..++..+-+.+.- ....|+.+|+.+++.......+.. -..++...|..+.. -++...
T Consensus 37 ~~ypHd~~aFTQGL~~~~~g~LyESTG~y---G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 37 ETYPHDPTAFTQGLEFLDDGTLYESTGLY---GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEE--TT-EEEEEEEEETTEEEEEECST---TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEE
T ss_pred EECCCCCcccCccEEecCCCEEEEeCCCC---CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEE
Confidence 44442334455677775666666666653 124799999999998877773333 34567777776666 489999
Q ss_pred EEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCC-ceeEEe--ecC---CceEEEEEcCCCC
Q 015650 198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIM--AHD---SRIACFALTQDGQ 271 (403)
Q Consensus 198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~-~~~~~~--~~~---~~i~~~~~sp~g~ 271 (403)
+||..+.+.+.++.-. ..-..++ .+++.+++ +-| ...++.+|..+- ....+. ... ..++-+.+- +|.
T Consensus 114 ~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~-SDG--S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~ 186 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIM-SDG--SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK 186 (264)
T ss_dssp EEETTTTEEEEEEE-S-SS--EEE--ECSSCEEE-E-S--SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE
T ss_pred EEccccceEEEEEecC-CcceEEE--cCCCEEEE-ECC--ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE
Confidence 9999999888888643 2333444 66666544 323 467888887762 233332 222 235556665 665
Q ss_pred EEEEEeCCCcEEEEEEcCCCcEEEEEecC-------------CCcccEEEEEeCCCCCEEEEEe
Q 015650 272 LLATSSTKGTLVRIFNTLDGTLLQEVRRG-------------ADRAEIYSLAFSSNAQWLAVSS 322 (403)
Q Consensus 272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-------------~~~~~v~~l~~s~d~~~l~s~~ 322 (403)
+.|=.-.... |..-|..+|+.+..+... ....-.+.|+|.|..+.|...+
T Consensus 187 IyANVW~td~-I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 187 IYANVWQTDR-IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTSSE-EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCe-EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 5554444555 888999999998877421 0124689999998777665544
No 382
>PRK10115 protease 2; Provisional
Probab=97.16 E-value=0.3 Score=48.30 Aligned_cols=240 Identities=10% Similarity=0.045 Sum_probs=121.0
Q ss_pred CeEEEEEcCCCCEEEEEcCC-c-----EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCC-CCCceEE
Q 015650 87 TLLHISFNQDHGCFAAGTDH-G-----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ-YPLNKVM 159 (403)
Q Consensus 87 ~i~~i~~s~d~~~l~~~~~~-~-----i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~-~~~~~i~ 159 (403)
.+..+.++|||++|+.+.|. | |++.++.++..+ ...+. .. . ..+.|.+++..++-...+.. .....|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~--~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLD--NV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-Ccccc--Cc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 46778999999999988632 2 777788765422 12232 11 1 34777765543322211111 1226789
Q ss_pred EEECCCC--ceeEEEe-cCCcee-EEEEecCceEEE------ecCeEEEEEcC--CceeeeEeeccCCCceeEEEeeCCC
Q 015650 160 IWDDHQS--RCIGELS-FRSEVR-SVKLRRDRIIVV------LEQKIFVYNFA--DLKLLHQIETIANPKGLCAVSQGVG 227 (403)
Q Consensus 160 iwd~~~~--~~~~~~~-~~~~i~-~~~~~~~~~~~~------~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (403)
.+++.++ +....+. ...... .+..+.++.+++ .++.+.+|+.. +++....+. ....... .+...++
T Consensus 203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~ 280 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP-RRKDHEY-SLDHYQH 280 (686)
T ss_pred EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE-CCCCCEE-EEEeCCC
Confidence 9999888 4444444 222232 333344766655 25679999843 333222222 2222222 2223345
Q ss_pred eEEEEee-CCccCeEEEEEccC-CceeEEeec-C-CceEEEEEcCCCCEEEEEeCCCc-EEEEEEcCCCcEEEEEecCCC
Q 015650 228 SLVLVCP-GLQKGQVRVEHYAS-KRTKFIMAH-D-SRIACFALTQDGQLLATSSTKGT-LVRIFNTLDGTLLQEVRRGAD 302 (403)
Q Consensus 228 ~~~~~~~-g~~d~~i~v~d~~~-~~~~~~~~~-~-~~i~~~~~sp~g~~l~s~~~dg~-~i~iwd~~~~~~~~~~~~~~~ 302 (403)
.+++.+. +.....|...++.. +....+..+ . ..|..+.+. .+.++++...++. .|.+++...+ .+..+... .
T Consensus 281 ~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~-~ 357 (686)
T PRK10115 281 RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFD-D 357 (686)
T ss_pred EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCC-C
Confidence 6666652 22333444445542 333455555 3 367888886 3344455555654 1444554333 33444311 1
Q ss_pred cccEEEEEeC--CCCC-EEEEEe---CCCcEEEEEeecCC
Q 015650 303 RAEIYSLAFS--SNAQ-WLAVSS---DKGTVHVFNLKVNS 336 (403)
Q Consensus 303 ~~~v~~l~~s--~d~~-~l~s~~---~dg~v~iwd~~~~~ 336 (403)
...+..+.++ +++. ++++.+ .-+.++.+|+.+++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 358 PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 2233334444 4444 444333 45678888887754
No 383
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.14 E-value=0.13 Score=43.63 Aligned_cols=191 Identities=8% Similarity=0.029 Sum_probs=112.7
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEE
Q 015650 81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (403)
Q Consensus 81 ~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~ 159 (403)
..+-...|.++.|+|+.+.|.+..++. -.|+-...++.+....+. .-...-.+.+..++.++++..++ +.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~--g~~DpE~Ieyig~n~fvi~dER~-----~~l~ 153 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT--GFSDPETIEYIGGNQFVIVDERD-----RALY 153 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc--ccCChhHeEEecCCEEEEEehhc-----ceEE
Confidence 344555699999999999988887766 444433344444333443 34455667888899999999988 9999
Q ss_pred EEECCCCceeE-----EEe-----c-CCceeEEEEecCceEEE---ecCeEEEEEcCCce-e--eeEeec-------cCC
Q 015650 160 IWDDHQSRCIG-----ELS-----F-RSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK-L--LHQIET-------IAN 215 (403)
Q Consensus 160 iwd~~~~~~~~-----~~~-----~-~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~-~--~~~~~~-------~~~ 215 (403)
++.+.....+. .+. + ......++|.|....+. ..+-+.||...... . +..... .-.
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~ 233 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL 233 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEee
Confidence 99876653221 122 2 44567899999654444 24445555443221 0 010001 122
Q ss_pred CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCC---------ceEEEEEcCCCCEEEEEeCCCc
Q 015650 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDS---------RIACFALTQDGQLLATSSTKGT 281 (403)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~---------~i~~~~~sp~g~~l~s~~~dg~ 281 (403)
.+..+.+.+..+.+++.+ .+++.+.-.|.....+..+.-+.+ ....++..++|.+. ..|+-+.
T Consensus 234 DvSgl~~~~~~~~LLVLS--~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lY-IvSEPnl 305 (316)
T COG3204 234 DVSGLEFNAITNSLLVLS--DESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLY-IVSEPNL 305 (316)
T ss_pred ccccceecCCCCcEEEEe--cCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEE-EEecCCc
Confidence 345677777777776664 577888888877765444332221 23456777766543 3344443
No 384
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.11 E-value=0.21 Score=45.54 Aligned_cols=77 Identities=16% Similarity=0.287 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeC-CC----------------CCE-EEE
Q 015650 259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS-SN----------------AQW-LAV 320 (403)
Q Consensus 259 ~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s-~d----------------~~~-l~s 320 (403)
..+.+++.+|++++.|+...-|. |.++|+.++..++.+++-.+ ..+.=+... .. ..+ ++-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~~~vvrmWKGYRd-Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGR-VLLIDVARGIVVRMWKGYRD-AQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCc-EEEEECCCChhhhhhccCcc-ceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 45788999999998888777788 99999999988887775211 111111110 10 112 233
Q ss_pred EeCCCcEEEEEeecCCC
Q 015650 321 SSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 321 ~~~dg~v~iwd~~~~~~ 337 (403)
+-.-|.|-||.++++..
T Consensus 386 aprRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPR 402 (415)
T ss_pred eccCCeEEEEecCCCCE
Confidence 45678888998888774
No 385
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.042 Score=46.09 Aligned_cols=158 Identities=11% Similarity=0.073 Sum_probs=103.2
Q ss_pred CCCceeEEEecCCceeEEEEecCceEEE-e----cCeEEEEEcCCceeeeEeeccCC--CceeEEEeeCCCeEEEEeeCC
Q 015650 164 HQSRCIGELSFRSEVRSVKLRRDRIIVV-L----EQKIFVYNFADLKLLHQIETIAN--PKGLCAVSQGVGSLVLVCPGL 236 (403)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~----d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~ 236 (403)
+.|+++........-..|+++|.....+ . .-...++|..+.+...++....+ ....=.|++++..+| ++-+.
T Consensus 56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LY-ATEnd 134 (366)
T COG3490 56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLY-ATEND 134 (366)
T ss_pred cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEE-eecCC
Confidence 4566666666666777888888644333 2 33578899988777666643332 223457899987654 33222
Q ss_pred ---ccCeEEEEEccC--CceeEEeecCCceEEEEEcCCCCEEEEEeC------C------------CcEEEEEEcCCCcE
Q 015650 237 ---QKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSST------K------------GTLVRIFNTLDGTL 293 (403)
Q Consensus 237 ---~d~~i~v~d~~~--~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~------d------------g~~i~iwd~~~~~~ 293 (403)
.-|.|-|||.+. .++-.+..|.-....+.+.+||+.|+.+.. | -. +.+.|..+|++
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePS-lvlld~atG~l 213 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPS-LVLLDAATGNL 213 (366)
T ss_pred CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCcc-EEEEeccccch
Confidence 247899999986 345567778878889999999999987543 0 12 44455556666
Q ss_pred EEEEecC--CCcccEEEEEeCCCCCEEEEEeC
Q 015650 294 LQEVRRG--ADRAEIYSLAFSSNAQWLAVSSD 323 (403)
Q Consensus 294 ~~~~~~~--~~~~~v~~l~~s~d~~~l~s~~~ 323 (403)
+.+.... .+.-.|..++..+||..++.+-.
T Consensus 214 iekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 214 IEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred hhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 5544332 34457888999999887776643
No 386
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.92 E-value=0.41 Score=45.73 Aligned_cols=189 Identities=14% Similarity=0.214 Sum_probs=104.0
Q ss_pred CCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcce-eE-------EEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650 96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI-GV-------VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (403)
Q Consensus 96 d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~-~v-------~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~ 167 (403)
++.++++..++.|.-+|..+++.+........... .. ..+.+..+..++ +..+ +.|.-.|.++|+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v--~t~d-----g~l~ALDa~TGk 141 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFF--GTLD-----ARLVALDAKTGK 141 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEE--EcCC-----CEEEEEECCCCC
Confidence 34444444455577778877777765544311100 00 112233333333 3334 889999999999
Q ss_pred eeEEEecC-----CceeE-EEEecCceEEE-e-------cCeEEEEEcCCceeeeEeeccCCC-----------------
Q 015650 168 CIGELSFR-----SEVRS-VKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIANP----------------- 216 (403)
Q Consensus 168 ~~~~~~~~-----~~i~~-~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~----------------- 216 (403)
.+...... ..+.+ ..+. ++.+++ . +|.|+.+|.++|+.+..+......
T Consensus 142 ~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~ 220 (527)
T TIGR03075 142 VVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGA 220 (527)
T ss_pred EEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccccc
Confidence 88776521 11211 1122 445554 2 578999999999988765432111
Q ss_pred --------------c-eeEEEeeCCCeEEEEeeCC---cc-----------CeEEEEEccCCceeEE-e--ecCC-----
Q 015650 217 --------------K-GLCAVSQGVGSLVLVCPGL---QK-----------GQVRVEHYASKRTKFI-M--AHDS----- 259 (403)
Q Consensus 217 --------------~-~~~~~~~~~~~~~~~~~g~---~d-----------~~i~v~d~~~~~~~~~-~--~~~~----- 259 (403)
+ ..+++.+..+.+|+.+ |. .+ ..|.-.|.++++++-. + .|..
T Consensus 221 ~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~t-Gnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~ 299 (527)
T TIGR03075 221 KTWPGDAWKTGGGATWGTGSYDPETNLIYFGT-GNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDG 299 (527)
T ss_pred CCCCCCccccCCCCccCceeEcCCCCeEEEeC-CCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccC
Confidence 0 0234455455555554 21 01 1566677777765432 1 2321
Q ss_pred --ceEEEEEcCCCC---EEEEEeCCCcEEEEEEcCCCcEE
Q 015650 260 --RIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLL 294 (403)
Q Consensus 260 --~i~~~~~sp~g~---~l~s~~~dg~~i~iwd~~~~~~~ 294 (403)
...-+.+..+|+ .++.+..+|. +++.|.++|+.+
T Consensus 300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~i 338 (527)
T TIGR03075 300 VNEMILFDLKKDGKPRKLLAHADRNGF-FYVLDRTNGKLL 338 (527)
T ss_pred CCCcEEEEeccCCcEEEEEEEeCCCce-EEEEECCCCcee
Confidence 111122334676 7788999999 999999999886
No 387
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.88 E-value=0.0057 Score=36.38 Aligned_cols=34 Identities=15% Similarity=0.327 Sum_probs=30.1
Q ss_pred CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 302 ~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
....|..++|+|...+||.++.+|.|.++++ +++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 3467999999999999999999999999999 444
No 388
>PHA02713 hypothetical protein; Provisional
Probab=96.86 E-value=0.32 Score=46.85 Aligned_cols=216 Identities=13% Similarity=0.100 Sum_probs=100.5
Q ss_pred EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEE--EecCCceeEEEEec
Q 015650 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE--LSFRSEVRSVKLRR 185 (403)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~--~~~~~~i~~~~~~~ 185 (403)
+..||..+.+-.....+. ....-.+.+...+.+++++|..........+..||..++..... +.....-.+++...
T Consensus 274 v~~yd~~~~~W~~l~~mp--~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 274 ILVYNINTMEYSVISTIP--NHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred EEEEeCCCCeEEECCCCC--ccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 667777665543323332 11111233334555666655321111125688888877643211 11111112333333
Q ss_pred CceEEE--ec-----CeEEEEEcCCcee--eeEeeccCCCceeEEEeeCCCeEEEEeeCCc-------------------
Q 015650 186 DRIIVV--LE-----QKIFVYNFADLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQ------------------- 237 (403)
Q Consensus 186 ~~~~~~--~d-----~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------------------- 237 (403)
+..+++ .+ .++..||..+.+- +..+.........+ .-++.+|++ +|..
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~---~~~g~IYvi-GG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC---VLDQYIYII-GGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE---EECCEEEEE-eCCCccccccccccccccccccc
Confidence 333444 12 2488899876432 22222111111112 223444443 3422
Q ss_pred ---cCeEEEEEccCCceeEEeec---CCceEEEEEcCCCCEEEEEeCCC------cEEEEEEcCC-CcEE--EEEecCCC
Q 015650 238 ---KGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTKG------TLVRIFNTLD-GTLL--QEVRRGAD 302 (403)
Q Consensus 238 ---d~~i~v~d~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~s~~~dg------~~i~iwd~~~-~~~~--~~~~~~~~ 302 (403)
-..+..||..+..-..+..- ......+.+ +|++.+.|+.++ . +..||..+ .+-. ..+.. .
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~-ve~Ydp~~~~~W~~~~~m~~--~ 502 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTC-IFRYNTNTYNGWELITTTES--R 502 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCcccee-EEEecCCCCCCeeEccccCc--c
Confidence 13477788777554333211 111112222 677777777542 3 67899876 4432 22221 1
Q ss_pred cccEEEEEeCCCCCEEEEEeCCC--cEEEEEeecCC
Q 015650 303 RAEIYSLAFSSNAQWLAVSSDKG--TVHVFNLKVNS 336 (403)
Q Consensus 303 ~~~v~~l~~s~d~~~l~s~~~dg--~v~iwd~~~~~ 336 (403)
......+.+ +|++.++|+.+| .+..||..+.+
T Consensus 503 r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 503 LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred cccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 122222333 788889999888 56666666655
No 389
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.81 E-value=0.32 Score=44.34 Aligned_cols=194 Identities=18% Similarity=0.250 Sum_probs=97.4
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEeccc-----CcceeEEEEeee-----CC---eEEE
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFER-----GGGIGVVEMLFR-----CN---ILAL 144 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~-----~~~~~v~~~~~~-----~~---~~~~ 144 (403)
.......+.|++++.| |=-++|+|.++| +.|.|++...-++...+.. .....++.+.|. .| ...+
T Consensus 80 ~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp EEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred hheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 3445557899999997 556899998666 9999998777776655542 234456667664 23 2455
Q ss_pred eeCCCCCCCCCceEEEEECCC---Ccee----EEE-ecCCceeEEE-EecC----------------------ceEEE-e
Q 015650 145 VGGGPDPQYPLNKVMIWDDHQ---SRCI----GEL-SFRSEVRSVK-LRRD----------------------RIIVV-L 192 (403)
Q Consensus 145 ~s~~~d~~~~~~~i~iwd~~~---~~~~----~~~-~~~~~i~~~~-~~~~----------------------~~~~~-~ 192 (403)
..|... |.+.+|.+.- +... ... .+.++|..+. ++.+ +.+++ +
T Consensus 159 ~vGTn~-----G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 159 LVGTNS-----GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEETT-----SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred EEEeCC-----CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 555555 8999997641 2111 112 2455665554 3222 23333 6
Q ss_pred cCeEEEEEcCCceeeeEeeccCCCceeEEEee---CCCeEEEEeeCCccCeEEEEEccC-CceeEEeec----CCceEEE
Q 015650 193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ---GVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAH----DSRIACF 264 (403)
Q Consensus 193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~d~~i~v~d~~~-~~~~~~~~~----~~~i~~~ 264 (403)
+..++++.+.+.+..+...........+++.+ ......+++- ..+|.|++|.+.. +.+..+... ...+...
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l-~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s 312 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCL-FNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS 312 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEE-ETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEE-ECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence 88999999887766554431111222333421 1122233332 3789999999987 444343332 2234456
Q ss_pred EEcCCCCEEEEEeCC
Q 015650 265 ALTQDGQLLATSSTK 279 (403)
Q Consensus 265 ~~sp~g~~l~s~~~d 279 (403)
.++++|..++-.+..
T Consensus 313 sis~~Gdi~~~~gps 327 (395)
T PF08596_consen 313 SISRNGDIFYWTGPS 327 (395)
T ss_dssp EE-TTS-EEEE-SSS
T ss_pred EECCCCCEEEEeCcc
Confidence 678888877655443
No 390
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.78 E-value=0.39 Score=43.44 Aligned_cols=189 Identities=12% Similarity=0.090 Sum_probs=86.5
Q ss_pred eEEEeeCCCCCCCCCceEEEEECCCC----ceeEEEec----C----CceeEEEEecCceEEEe---------cCeEEEE
Q 015650 141 ILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELSF----R----SEVRSVKLRRDRIIVVL---------EQKIFVY 199 (403)
Q Consensus 141 ~~~~~s~~~d~~~~~~~i~iwd~~~~----~~~~~~~~----~----~~i~~~~~~~~~~~~~~---------d~~i~i~ 199 (403)
..+++.+-.. +.|+|+|+.+. ++.+.++. . .....+..-|+|.++++ -|.+.++
T Consensus 88 r~Li~PgL~S-----srIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ll 162 (461)
T PF05694_consen 88 RYLILPGLRS-----SRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLL 162 (461)
T ss_dssp -EEEEEBTTT-------EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE
T ss_pred CcEEeeeecc-----CcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEE
Confidence 3445555455 89999998743 44555541 1 22344556678866651 3468888
Q ss_pred EcCCceeeeEeeccCC---CceeEEEeeCCCeEEEEee-------------------CCccCeEEEEEccCCceeE-Eee
Q 015650 200 NFADLKLLHQIETIAN---PKGLCAVSQGVGSLVLVCP-------------------GLQKGQVRVEHYASKRTKF-IMA 256 (403)
Q Consensus 200 d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------------------g~~d~~i~v~d~~~~~~~~-~~~ 256 (403)
|-++.+.....+.... ..+.+.+.|..+ +++++ +.....+.+||+...+..+ +.-
T Consensus 163 D~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL 240 (461)
T PF05694_consen 163 DGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL 240 (461)
T ss_dssp -TTT--EEEE--SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred cCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence 8877776666544322 123344555443 23321 1123689999999976554 332
Q ss_pred cC--CceEEEEEc--CCCCEEEEEeC-CCcEEEEEEc-CCCc----EEEEEecCC---------------CcccEEEEEe
Q 015650 257 HD--SRIACFALT--QDGQLLATSST-KGTLVRIFNT-LDGT----LLQEVRRGA---------------DRAEIYSLAF 311 (403)
Q Consensus 257 ~~--~~i~~~~~s--p~g~~l~s~~~-dg~~i~iwd~-~~~~----~~~~~~~~~---------------~~~~v~~l~~ 311 (403)
-. .....+.|. |+..+=++++. ..+ |..|-- ..++ .+..+.... -..-|+.|.+
T Consensus 241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~-i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 241 GEEGQMPLEVRFLHDPDANYGFVGCALSSS-IWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EE-EEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred CCCCCceEEEEecCCCCccceEEEEeccce-EEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 21 235567775 44555444443 344 555533 3332 222222100 0245899999
Q ss_pred CCCCCEEEEEe-CCCcEEEEEeecCCC
Q 015650 312 SSNAQWLAVSS-DKGTVHVFNLKVNSG 337 (403)
Q Consensus 312 s~d~~~l~s~~-~dg~v~iwd~~~~~~ 337 (403)
|.|.++|...+ .+|.|+.||+....+
T Consensus 320 SlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 320 SLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp -TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred ccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 99999997766 899999999998774
No 391
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.31 Score=41.39 Aligned_cols=162 Identities=7% Similarity=0.076 Sum_probs=102.5
Q ss_pred CcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEEe---cCeEEEEEc
Q 015650 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNF 201 (403)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~---d~~i~i~d~ 201 (403)
+....+.++.|+++...+++.... ..-.++=..+|+.++++. .-.....+.+..++.+++. ++.++++.+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~-----p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNK-----PAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccceeeCCCcceEEEecCC-----CceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence 445569999999998877776665 556666668899999987 4456677888899998884 567777766
Q ss_pred CCceeeeE-------ee---ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc--e--eEEee-------cCCc
Q 015650 202 ADLKLLHQ-------IE---TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--T--KFIMA-------HDSR 260 (403)
Q Consensus 202 ~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~--~--~~~~~-------~~~~ 260 (403)
.....+.. +. ........+++.+....++++= +..-+.||.+.... . ..... .-..
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK---Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D 234 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK---ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLD 234 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE---ccCCcEEEEEecCCcccccccccCcccccceEeec
Confidence 54321111 11 1133445689999888877763 55567777665422 1 11111 1234
Q ss_pred eEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 015650 261 IACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVR 298 (403)
Q Consensus 261 i~~~~~sp~-g~~l~s~~~dg~~i~iwd~~~~~~~~~~~ 298 (403)
|.++.|++. +.+|+-+.+++. |.-.|. .|+.+..+.
T Consensus 235 vSgl~~~~~~~~LLVLS~ESr~-l~Evd~-~G~~~~~ls 271 (316)
T COG3204 235 VSGLEFNAITNSLLVLSDESRR-LLEVDL-SGEVIELLS 271 (316)
T ss_pred cccceecCCCCcEEEEecCCce-EEEEec-CCCeeeeEE
Confidence 778888874 555566666666 777775 455444443
No 392
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.65 E-value=0.0075 Score=35.87 Aligned_cols=34 Identities=21% Similarity=0.410 Sum_probs=29.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE
Q 015650 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293 (403)
Q Consensus 258 ~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~ 293 (403)
...|.+++|+|...+||.++.+|. |.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCe-EEEEEC-CCcC
Confidence 456899999999999999999999 999998 5554
No 393
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.64 E-value=0.29 Score=40.06 Aligned_cols=202 Identities=15% Similarity=0.149 Sum_probs=112.0
Q ss_pred CCcEEEEEcCCCeeEEEEecccCcc--eeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC--CCceeEEEe------c
Q 015650 105 DHGFRIYNCDPFREIFRRDFERGGG--IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH--QSRCIGELS------F 174 (403)
Q Consensus 105 ~~~i~iw~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~--~~~~~~~~~------~ 174 (403)
.+.|.-||+...+. ....++ +.. ..+.-+.-.++. +.+..+.. -.|.-||.. .-...+++. .
T Consensus 36 ag~v~r~D~~qn~v-~ra~ie-~p~~ag~ilpv~~~~q~-~~v~~G~k-----f~i~nwd~~~~~a~v~~t~~ev~~d~k 107 (310)
T KOG4499|consen 36 AGEVHRYDIEQNKV-YRAKIE-GPPSAGFILPVEGGPQE-FAVGCGSK-----FVIVNWDGVSESAKVYRTLFEVQPDRK 107 (310)
T ss_pred cCceehhhhhhhhe-EEEEEe-cCcceeEEEEecCCCce-EEEeecce-----EEEEEcccccceeeeeeeccccCchHH
Confidence 34466699876443 334444 221 112222222333 34444432 345557632 223333321 2
Q ss_pred CCceeEEEEecCceEEE---e---------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEE
Q 015650 175 RSEVRSVKLRRDRIIVV---L---------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR 242 (403)
Q Consensus 175 ~~~i~~~~~~~~~~~~~---~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 242 (403)
....+.-..+|+|++.+ . .|.++.|-.. ..+..+...-.--..++|+.+.+.+++.- +.+-.|.
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iD--sln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYID--SLNYEVD 183 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEc--cCceEEe
Confidence 45667778889999976 1 3456665532 22222222223335678887777666653 5677787
Q ss_pred EEEc--cCCce------eEEee---c-CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEE
Q 015650 243 VEHY--ASKRT------KFIMA---H-DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (403)
Q Consensus 243 v~d~--~~~~~------~~~~~---~-~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 310 (403)
-||. .++.+ ..++. . .-....+++..+|++.++.-+.++ |...|..+|+.+.++... ...|++++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~-V~~~dp~tGK~L~eiklP--t~qitscc 260 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT-VQKVDPTTGKILLEIKLP--TPQITSCC 260 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE-EEEECCCCCcEEEEEEcC--CCceEEEE
Confidence 7884 33221 11111 1 112234566778888887777777 999999999999999864 46899999
Q ss_pred eCC-CCCEEEEE
Q 015650 311 FSS-NAQWLAVS 321 (403)
Q Consensus 311 ~s~-d~~~l~s~ 321 (403)
|-- +-..|.+.
T Consensus 261 FgGkn~d~~yvT 272 (310)
T KOG4499|consen 261 FGGKNLDILYVT 272 (310)
T ss_pred ecCCCccEEEEE
Confidence 953 22344443
No 394
>PRK10115 protease 2; Provisional
Probab=96.49 E-value=1 Score=44.64 Aligned_cols=202 Identities=6% Similarity=-0.044 Sum_probs=105.6
Q ss_pred eeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE---e-c-----CeEEEEE
Q 015650 130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---L-E-----QKIFVYN 200 (403)
Q Consensus 130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~-d-----~~i~i~d 200 (403)
..+..+.+++++..++-+.+........|++.|+.+|+.+...- ...-..++|.+|+..++ . + ..|+.++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 45667788888876664433222223578999998886432221 11114699999876555 2 1 3688889
Q ss_pred cCCc--eeeeEeeccCCCceeEEEee-CCCeEEEEeeCCccCeEEEEEcc--CCceeEEeecCCc-eEEEEEcCCCCEEE
Q 015650 201 FADL--KLLHQIETIANPKGLCAVSQ-GVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMAHDSR-IACFALTQDGQLLA 274 (403)
Q Consensus 201 ~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~d~~i~v~d~~--~~~~~~~~~~~~~-i~~~~~sp~g~~l~ 274 (403)
+.++ +....+...........+.. +++.+++.+....++.+.+++.. ......+..+... ...+. +..+.+++
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~ 284 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYL 284 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEE
Confidence 8887 33334443333333233333 66666666655566789998853 2332333333322 22222 32333333
Q ss_pred EEeCCC-c-EEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650 275 TSSTKG-T-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (403)
Q Consensus 275 s~~~dg-~-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~ 334 (403)
....+. . .|...++.+......+..+.....|..+.+. .+.++++...+|.-+++-++.
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~ 345 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINR 345 (686)
T ss_pred EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcC
Confidence 322222 2 1333444421122233332122468888887 334556666788766666553
No 395
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.39 E-value=1.2 Score=44.30 Aligned_cols=213 Identities=12% Similarity=0.188 Sum_probs=124.2
Q ss_pred EEEEEcCCCeeEEEEecccCcce---eEEEEeeeCC-eEEEeeC-CCC-C---CCCCceEEEEECCCCceeEE---EecC
Q 015650 108 FRIYNCDPFREIFRRDFERGGGI---GVVEMLFRCN-ILALVGG-GPD-P---QYPLNKVMIWDDHQSRCIGE---LSFR 175 (403)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~~~s~-~~d-~---~~~~~~i~iwd~~~~~~~~~---~~~~ 175 (403)
++++|-++.+......+. ... .+.+..|..| ..+++.| +.- | ..-.|.|.++.+..++.++. ..-+
T Consensus 752 l~vlD~nTf~vl~~hef~--~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~ 829 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFE--RNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVK 829 (1096)
T ss_pred EEEecCCceeEEeecccc--ccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeec
Confidence 678887777766555554 333 3444447655 3333332 210 0 01127788888776333322 2245
Q ss_pred CceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC--Ccee
Q 015650 176 SEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTK 252 (403)
Q Consensus 176 ~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~ 252 (403)
+.+.++..- +|++++ .+..|++|++.+.+.++.-..+..++..+.+.-.++.++++ .--+.+.+.-.+. +...
T Consensus 830 Gav~aL~~f-ngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~Vg---Dlm~Sitll~y~~~eg~f~ 905 (1096)
T KOG1897|consen 830 GAVYALVEF-NGKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVG---DLMRSITLLQYKGDEGNFE 905 (1096)
T ss_pred cceeehhhh-CCeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEe---eccceEEEEEEeccCCceE
Confidence 555555543 566666 78999999998887776666677788888888888865543 3456666554444 3344
Q ss_pred EE--eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC-------------------CcEEEEEecCCCcccEEEE--
Q 015650 253 FI--MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD-------------------GTLLQEVRRGADRAEIYSL-- 309 (403)
Q Consensus 253 ~~--~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~-------------------~~~~~~~~~~~~~~~v~~l-- 309 (403)
.+ ..+..+++++.+-.+..+| -+..+|. +.+-...+ |+.+..++ |..-|..+
T Consensus 906 evArD~~p~Wmtaveil~~d~yl-gae~~gN-lf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~---hg~lv~~~~~ 980 (1096)
T KOG1897|consen 906 EVARDYNPNWMTAVEILDDDTYL-GAENSGN-LFTVRKDSDATTDEERQILEEVGKFHLGELVNKFR---HGSLVMQLGD 980 (1096)
T ss_pred EeehhhCccceeeEEEecCceEE-eeccccc-EEEEEecCCCCchhhhhcccceeeEEeccceeeee---ecceEeeccc
Confidence 33 3467788888887665554 4556666 66654322 23333343 33334431
Q ss_pred EeCCCCCEEEEEeCCCcEEEEE
Q 015650 310 AFSSNAQWLAVSSDKGTVHVFN 331 (403)
Q Consensus 310 ~~s~d~~~l~s~~~dg~v~iwd 331 (403)
.-+|-+..++.|..+|.|-+--
T Consensus 981 s~~~~~~~vlfgTv~GsIG~i~ 1002 (1096)
T KOG1897|consen 981 SMIPLEPKVLFGTVNGSIGIIV 1002 (1096)
T ss_pred cccCCCCcEEEEEccceEEEEE
Confidence 2234455688888899887653
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.14 E-value=1.4 Score=42.58 Aligned_cols=189 Identities=16% Similarity=0.148 Sum_probs=97.0
Q ss_pred eEEEeeCCCCC-CCCCceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEE--ec------CeEEEEEcCCceeeeE
Q 015650 141 ILALVGGGPDP-QYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV--LE------QKIFVYNFADLKLLHQ 209 (403)
Q Consensus 141 ~~~~~s~~~d~-~~~~~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~--~d------~~i~i~d~~~~~~~~~ 209 (403)
...++.|+... ......+..+|..+++....-. ....-.+++...+..+++ .| .++..||..+.+-..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~- 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP- 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec-
Confidence 33444444432 2222578889988775443332 444455667777766666 34 368889987765322
Q ss_pred eeccCCCceeEEEeeCCCeEEEEeeCCccC-----eEEEEEccCCceeEEeecCCc---eEEEEEcCCCCEEEEEeCCCc
Q 015650 210 IETIANPKGLCAVSQGVGSLVLVCPGLQKG-----QVRVEHYASKRTKFIMAHDSR---IACFALTQDGQLLATSSTKGT 281 (403)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~-----~i~v~d~~~~~~~~~~~~~~~---i~~~~~sp~g~~l~s~~~dg~ 281 (403)
+..-...-....+..-+..+ .+.+| .|| .+..||..+.+-......... ...+.+ +|++.++|+.++.
T Consensus 364 ~a~M~~~R~~~~v~~l~g~i-YavGG-~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAVLDGKL-YAVGG-FDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGS 439 (571)
T ss_pred cCCccCccccceeEEECCEE-EEEec-cccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCC
Confidence 11111112223333333343 34434 454 467788777554443322222 222223 7888888886653
Q ss_pred E-----EEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCc-----EEEEEeecCC
Q 015650 282 L-----VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT-----VHVFNLKVNS 336 (403)
Q Consensus 282 ~-----i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~-----v~iwd~~~~~ 336 (403)
. +..||..+.+....-.-..-..... ++. -++.+.+.||.|+. |..||..+.+
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 1 6778877665432221100111111 222 36778888887763 5556666554
No 397
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.10 E-value=0.022 Score=46.12 Aligned_cols=103 Identities=16% Similarity=0.194 Sum_probs=67.6
Q ss_pred CCccCeEEEEEccC-Cc-eeEEeecCCceEEE-EEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc-ccEEEEE
Q 015650 235 GLQKGQVRVEHYAS-KR-TKFIMAHDSRIACF-ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-AEIYSLA 310 (403)
Q Consensus 235 g~~d~~i~v~d~~~-~~-~~~~~~~~~~i~~~-~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~-~~v~~l~ 310 (403)
|..+|.|.+|.... +. ..........|.++ .--.++.+.++++.+|. |+.|++.-.+.+..... |. ..+..+.
T Consensus 76 G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~k~~g~~g~--h~~~~~e~~i 152 (238)
T KOG2444|consen 76 GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPNKVLGYVGQ--HNFESGEELI 152 (238)
T ss_pred ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccCceeeeecc--ccCCCcceeE
Confidence 55899999998763 11 11111122223332 22235668889999999 99999988887765554 44 4556666
Q ss_pred eCCCCCEEEEE--eCCCcEEEEEeecCCCCCC
Q 015650 311 FSSNAQWLAVS--SDKGTVHVFNLKVNSGSAR 340 (403)
Q Consensus 311 ~s~d~~~l~s~--~~dg~v~iwd~~~~~~~~~ 340 (403)
.+..++.|+.+ |.|..++.|++..-..+..
T Consensus 153 vv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~~ 184 (238)
T KOG2444|consen 153 VVGSDEFLKIADTSHDRVLKKWNVEKIKDESP 184 (238)
T ss_pred EecCCceEEeeccccchhhhhcchhhhhccCc
Confidence 66667777777 7888888888887665443
No 398
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.96 E-value=1.7 Score=42.00 Aligned_cols=232 Identities=14% Similarity=0.132 Sum_probs=115.9
Q ss_pred CCCCEEEEEc-CC------cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650 95 QDHGCFAAGT-DH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (403)
Q Consensus 95 ~d~~~l~~~~-~~------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~ 167 (403)
..+.+++.|+ .+ .+..||..+........+. ....-.+++...+.+++++|..........+..||..+++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~--~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP--SPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC--cccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3455666666 32 2778887776554444443 3333455555555555554443123334678889988776
Q ss_pred eeEEEe--cCCceeEEEEecCceEEE--ecC-----eEEEEEcCCcee--eeEeeccCCCceeEEEeeCCCeEEEEeeCC
Q 015650 168 CIGELS--FRSEVRSVKLRRDRIIVV--LEQ-----KIFVYNFADLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (403)
Q Consensus 168 ~~~~~~--~~~~i~~~~~~~~~~~~~--~d~-----~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 236 (403)
-...-. ....-.+++....-.+++ .|| ++-.||..+.+- +..+. ......+...-+..+|++ .|.
T Consensus 361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~---~~r~~~gv~~~~g~iYi~-GG~ 436 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML---TRRSGHGVAVLGGKLYII-GGG 436 (571)
T ss_pred eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC---cceeeeEEEEECCEEEEE-cCc
Confidence 433211 111112233323333333 233 588888776432 22121 123334444444454444 231
Q ss_pred c-----cCeEEEEEccCCceeEEee---cCCceEEEEEcCCCCEEEEEeCCCc----EEEEEEcCCCcEEEEEecCCCcc
Q 015650 237 Q-----KGQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSSTKGT----LVRIFNTLDGTLLQEVRRGADRA 304 (403)
Q Consensus 237 ~-----d~~i~v~d~~~~~~~~~~~---~~~~i~~~~~sp~g~~l~s~~~dg~----~i~iwd~~~~~~~~~~~~~~~~~ 304 (403)
. -..+..||..+..-..+.. .........+ ++.+.+.|+.|+. .|..||..+.+....-.-.....
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs 514 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS 514 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc
Confidence 1 1457788888765444322 1112222222 7778888887761 16778887765543321111112
Q ss_pred cEEEEEeCCCCCEEEEEeCCCc-----EEEEEeecCC
Q 015650 305 EIYSLAFSSNAQWLAVSSDKGT-----VHVFNLKVNS 336 (403)
Q Consensus 305 ~v~~l~~s~d~~~l~s~~~dg~-----v~iwd~~~~~ 336 (403)
.+....+ +++..++|+.||. |..||..+.+
T Consensus 515 ~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 515 AVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred cccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 2222222 6677788887774 5555544443
No 399
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.86 E-value=0.25 Score=47.34 Aligned_cols=108 Identities=11% Similarity=0.137 Sum_probs=75.2
Q ss_pred CeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEee--eCCeEEEeeCCCCCCCCCceEEEEEC
Q 015650 87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF--RCNILALVGGGPDPQYPLNKVMIWDD 163 (403)
Q Consensus 87 ~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~~~d~~~~~~~i~iwd~ 163 (403)
.+.-+.-+.-++..++..++. +.|||.......+...+. ....|.++.| .+++..+.+.+-. +.|.++.-
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~--~~~~I~dLDWtst~d~qsiLaVGf~-----~~v~l~~Q 103 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFS--EDDPIRDLDWTSTPDGQSILAVGFP-----HHVLLYTQ 103 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeec--CCCceeeceeeecCCCCEEEEEEcC-----cEEEEEEc
Confidence 344445555556655555555 999999888877777774 4556666665 5677777777766 88888853
Q ss_pred C---------CCceeEEEe---c-CCceeEEEEecCceEEE-ecCeEEEEEc
Q 015650 164 H---------QSRCIGELS---F-RSEVRSVKLRRDRIIVV-LEQKIFVYNF 201 (403)
Q Consensus 164 ~---------~~~~~~~~~---~-~~~i~~~~~~~~~~~~~-~d~~i~i~d~ 201 (403)
. ....++.+. + ..+|.+..|.++|.+++ +++.+.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence 1 113445544 3 47899999999999988 7889999984
No 400
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.54 Score=37.82 Aligned_cols=164 Identities=10% Similarity=-0.008 Sum_probs=89.7
Q ss_pred ceeEEEecCCcee--EEEEecCceEEEe-----cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccC
Q 015650 167 RCIGELSFRSEVR--SVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (403)
Q Consensus 167 ~~~~~~~~~~~i~--~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 239 (403)
+.++++.|..... .+.+ .++.++.+ ...|++||+.+++.+.........+..--+..-++.++..+ -.+|
T Consensus 35 evi~~yphDs~sfTQGL~~-~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LT--w~eg 111 (262)
T COG3823 35 EVIRTYPHDSTSFTQGLEY-LDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLT--WKEG 111 (262)
T ss_pred EEEEeccCchhhhhcceee-eCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEE--eccc
Confidence 3455555543322 2333 24444442 55899999999988766544322333333344456666665 4678
Q ss_pred eEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCC---cccEEEEEeCCCCC
Q 015650 240 QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD---RAEIYSLAFSSNAQ 316 (403)
Q Consensus 240 ~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~---~~~v~~l~~s~d~~ 316 (403)
.-..+|.++-+..--....+.=..++. |++.|+.+....+ ++.-|-++.....++..... -..++.+.| -||.
T Consensus 112 vaf~~d~~t~~~lg~~~y~GeGWgLt~--d~~~LimsdGsat-L~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~ 187 (262)
T COG3823 112 VAFKYDADTLEELGRFSYEGEGWGLTS--DDKNLIMSDGSAT-LQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGE 187 (262)
T ss_pred eeEEEChHHhhhhcccccCCcceeeec--CCcceEeeCCceE-EEecCHHHhhhcceEEEEECCeecccccceee-eccE
Confidence 888888777332211122233344443 6666766665566 77777766544443332111 123445566 3666
Q ss_pred EEEEEeCCCcEEEEEeecCCC
Q 015650 317 WLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 317 ~l~s~~~dg~v~iwd~~~~~~ 337 (403)
..|-.-.+..|...+.++++.
T Consensus 188 lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 188 LYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred EEEeeeeecceEEEcCCCCcE
Confidence 666555566677777777764
No 401
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.80 E-value=0.5 Score=45.87 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=70.6
Q ss_pred ceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-------C-----c--------eeEEeecCCceEEEEEc--CCCCEEE
Q 015650 217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-------K-----R--------TKFIMAHDSRIACFALT--QDGQLLA 274 (403)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-------~-----~--------~~~~~~~~~~i~~~~~s--p~g~~l~ 274 (403)
|..+.+..-++.-+++. ..+||.|.+|..+. . . ......-...+..++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~-c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLL-CTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEE-EecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence 44454444344334433 25899999997643 0 0 01112234467889998 7788888
Q ss_pred EEeCCCcEEEEEEcCCC-cEEEEEecCCCcccEEEEEeCCCC-----C-EEEEEeCCCcEEEEEee
Q 015650 275 TSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNA-----Q-WLAVSSDKGTVHVFNLK 333 (403)
Q Consensus 275 s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~s~d~-----~-~l~s~~~dg~v~iwd~~ 333 (403)
++++... |.||-.... +.......+.+...|.+|.|-++. . +|++++-.|.+.+|++.
T Consensus 182 VSsNs~~-VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 182 VSSNSQE-VTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EecCCce-EEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 8888777 888755432 111111111244678889987643 2 78888999999999983
No 402
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.62 Score=37.47 Aligned_cols=103 Identities=9% Similarity=0.065 Sum_probs=64.2
Q ss_pred CCCEEEEEc-CC--cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEE
Q 015650 96 DHGCFAAGT-DH--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL 172 (403)
Q Consensus 96 d~~~l~~~~-~~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~ 172 (403)
+|.++.+.+ -+ .|++|++.+++......+. ....---.+.-..+..+..+..+ |.-..+|..+-+.+..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~e------gvaf~~d~~t~~~lg~~ 127 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKE------GVAFKYDADTLEELGRF 127 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEecc------ceeEEEChHHhhhhccc
Confidence 455655544 22 2999999999888777774 21221122333456667777654 78888999988888888
Q ss_pred ecCCceeEEEEecCceEEEecCe--EEEEEcCCcee
Q 015650 173 SFRSEVRSVKLRRDRIIVVLEQK--IFVYNFADLKL 206 (403)
Q Consensus 173 ~~~~~i~~~~~~~~~~~~~~d~~--i~i~d~~~~~~ 206 (403)
..++.=..++...+. ++.+||+ ++.-|.++...
T Consensus 128 ~y~GeGWgLt~d~~~-LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 128 SYEGEGWGLTSDDKN-LIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred ccCCcceeeecCCcc-eEeeCCceEEEecCHHHhhh
Confidence 877666666654333 4446664 55555554433
No 403
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.78 E-value=1.3 Score=39.49 Aligned_cols=238 Identities=13% Similarity=0.069 Sum_probs=116.5
Q ss_pred CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCee-EEEEec---ccCcceeEEEEeeeCC-----eEEEeeCCC--CCCCCC
Q 015650 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE-IFRRDF---ERGGGIGVVEMLFRCN-----ILALVGGGP--DPQYPL 155 (403)
Q Consensus 87 ~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~-~~~~~~---~~~~~~~v~~~~~~~~-----~~~~~s~~~--d~~~~~ 155 (403)
..+.|+|.|||++|++-..+.|++++. .+.. .....+ ..........++++++ .++++.... ......
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 457899999999988776566999983 3332 211222 2245668899999983 445544421 000000
Q ss_pred ceEEEEECCCC-------cee-EEEec----CCceeEEEEecCceEEEe----------------cCeEEEEEcCCcee-
Q 015650 156 NKVMIWDDHQS-------RCI-GELSF----RSEVRSVKLRRDRIIVVL----------------EQKIFVYNFADLKL- 206 (403)
Q Consensus 156 ~~i~iwd~~~~-------~~~-~~~~~----~~~i~~~~~~~~~~~~~~----------------d~~i~i~d~~~~~~- 206 (403)
..|.-|....+ +.+ ..+.. ...-..|.|.|||.+.++ .|.|.-.+.. ++.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCC
Confidence 23443443332 111 11112 334567999999977762 1344444432 220
Q ss_pred ------------eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc------------------------
Q 015650 207 ------------LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR------------------------ 250 (403)
Q Consensus 207 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~------------------------ 250 (403)
...+...-.....++|.+....++.+-.| .+..=.|..+..+.
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G-~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNG-PDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE--SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccC-CCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 11111111112347777774555554444 22222222222100
Q ss_pred -----eeEEeecCCceEEEEEcC-------CCCEEEEEeCCCcEEEEEEcCCCcEEEEEec--CCCcccEEEEEeCCCCC
Q 015650 251 -----TKFIMAHDSRIACFALTQ-------DGQLLATSSTKGTLVRIFNTLDGTLLQEVRR--GADRAEIYSLAFSSNAQ 316 (403)
Q Consensus 251 -----~~~~~~~~~~i~~~~~sp-------~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~s~d~~ 316 (403)
......+...+..+.|-. .|.+|++.-..+. |....+..+..+..... ......+..|++.|||.
T Consensus 240 ~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 240 PGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGR-IWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA 318 (331)
T ss_dssp TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTE-EEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred CCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCE-EEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence 011122334566676653 4556665555555 77777764433222211 11334799999999999
Q ss_pred EEEEEeCCCcEE
Q 015650 317 WLAVSSDKGTVH 328 (403)
Q Consensus 317 ~l~s~~~dg~v~ 328 (403)
+.++...+|.|+
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 888888888875
No 404
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.78 E-value=0.53 Score=45.23 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=66.3
Q ss_pred CccCeEEEEEccCCceeEEe--ecCCceEEEEEc--CCCCEEEEEeCCCcEEEEEEcC---------CCcEEEEEecCCC
Q 015650 236 LQKGQVRVEHYASKRTKFIM--AHDSRIACFALT--QDGQLLATSSTKGTLVRIFNTL---------DGTLLQEVRRGAD 302 (403)
Q Consensus 236 ~~d~~i~v~d~~~~~~~~~~--~~~~~i~~~~~s--p~g~~l~s~~~dg~~i~iwd~~---------~~~~~~~~~~~~~ 302 (403)
.....+.|||.+......-. ...+.|.++.|. |+|+.+++.+.... |.++--. +...++.+....+
T Consensus 48 ~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~-v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~ 126 (631)
T PF12234_consen 48 SSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH-VLLYTQLRYDYTNKGPSWAPIRKIDISSH 126 (631)
T ss_pred CCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE-EEEEEccchhhhcCCcccceeEEEEeecC
Confidence 34578999999987654433 347789999886 68998888888888 8888531 1234455433223
Q ss_pred c-ccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650 303 R-AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (403)
Q Consensus 303 ~-~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~ 334 (403)
. .+|.+..|-++|..++.+ ++.+.|++-.-
T Consensus 127 T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~~ 157 (631)
T PF12234_consen 127 TPHPIGDSIWLKDGTLVVGS--GNQLFVFDKWL 157 (631)
T ss_pred CCCCccceeEecCCeEEEEe--CCEEEEECCCc
Confidence 3 579999999998766554 44688876433
No 405
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.66 E-value=0.42 Score=43.76 Aligned_cols=141 Identities=11% Similarity=0.196 Sum_probs=85.6
Q ss_pred cCceEEEec----CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCC-------eEEEEeeCCccCeEEEEEccC-C-ce
Q 015650 185 RDRIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-------SLVLVCPGLQKGQVRVEHYAS-K-RT 251 (403)
Q Consensus 185 ~~~~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~d~~i~v~d~~~-~-~~ 251 (403)
.|..++..| ..++-.|++.|+.+.++..+... .+.+.|..+ +.++ |-.+..|.-.|.+. + ++
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv---GlS~~svFrIDPR~~gNKi 551 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV---GLSDYSVFRIDPRARGNKI 551 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE---eecccceEEecccccCCce
Confidence 445555543 36888899999999988876654 666666532 2222 22445555556544 2 22
Q ss_pred eEEeecCCceEEEEEcC----CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcE
Q 015650 252 KFIMAHDSRIACFALTQ----DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV 327 (403)
Q Consensus 252 ~~~~~~~~~i~~~~~sp----~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v 327 (403)
.. .......+.-.|+. ...|+|.++..|. |++||--.-+....+.+ ....|..|..+.+|++|++.+. ..+
T Consensus 552 ~v-~esKdY~tKn~Fss~~tTesGyIa~as~kGD-irLyDRig~rAKtalP~--lG~aIk~idvta~Gk~ilaTCk-~yl 626 (776)
T COG5167 552 KV-VESKDYKTKNKFSSGMTTESGYIAAASRKGD-IRLYDRIGKRAKTALPG--LGDAIKHIDVTANGKHILATCK-NYL 626 (776)
T ss_pred ee-eeehhccccccccccccccCceEEEecCCCc-eeeehhhcchhhhcCcc--cccceeeeEeecCCcEEEEeec-ceE
Confidence 22 22222233333332 4458999999999 99999533333223332 4468999999999999877664 467
Q ss_pred EEEEeecC
Q 015650 328 HVFNLKVN 335 (403)
Q Consensus 328 ~iwd~~~~ 335 (403)
.+-|+.-.
T Consensus 627 lL~d~~ik 634 (776)
T COG5167 627 LLTDVPIK 634 (776)
T ss_pred EEEecccc
Confidence 77777543
No 406
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.51 E-value=1.1 Score=40.70 Aligned_cols=137 Identities=17% Similarity=0.153 Sum_probs=74.2
Q ss_pred CceeEEEEecCceEEEec---------------CeEEEEEcCC--cee--eeEeeccCCCceeEEEeeCCCeEEEEeeCC
Q 015650 176 SEVRSVKLRRDRIIVVLE---------------QKIFVYNFAD--LKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (403)
Q Consensus 176 ~~i~~~~~~~~~~~~~~d---------------~~i~i~d~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 236 (403)
.....|+|.++|++.+.+ +.|.+++-.+ |+. ...+.........+++.+++ ++++.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~--- 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT--- 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC---
Confidence 345678888888877742 2677776443 322 23333223333556776665 55542
Q ss_pred ccCeEEEE-EccCC-----ceeEE-e---e----cCCceEEEEEcCCCCEEEEEeCC-------------------CcEE
Q 015650 237 QKGQVRVE-HYASK-----RTKFI-M---A----HDSRIACFALTQDGQLLATSSTK-------------------GTLV 283 (403)
Q Consensus 237 ~d~~i~v~-d~~~~-----~~~~~-~---~----~~~~i~~~~~sp~g~~l~s~~~d-------------------g~~i 283 (403)
. ..|..+ |.... +...+ . . +......++|.|||.+.++-+.. +. |
T Consensus 89 ~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~-i 166 (367)
T TIGR02604 89 P-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG-L 166 (367)
T ss_pred C-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce-E
Confidence 2 334433 44321 22221 1 1 13447789999999877654421 34 5
Q ss_pred EEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe
Q 015650 284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS 322 (403)
Q Consensus 284 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~ 322 (403)
.-+|...++ +..+..+ + .....++|+++|+++++-.
T Consensus 167 ~r~~pdg~~-~e~~a~G-~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 167 FRYNPDGGK-LRVVAHG-F-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EEEecCCCe-EEEEecC-c-CCCccceECCCCCEEEEcc
Confidence 555554433 3333321 2 3467899999999887644
No 407
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=0.19 Score=50.34 Aligned_cols=143 Identities=11% Similarity=0.067 Sum_probs=85.7
Q ss_pred CCceeEEEEecCceEEE---e--cCeEEEEEcCCceee-----eEeec------cCCCceeEEEeeCCCeEEEEeeCCcc
Q 015650 175 RSEVRSVKLRRDRIIVV---L--EQKIFVYNFADLKLL-----HQIET------IANPKGLCAVSQGVGSLVLVCPGLQK 238 (403)
Q Consensus 175 ~~~i~~~~~~~~~~~~~---~--d~~i~i~d~~~~~~~-----~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~d 238 (403)
.-+|..+...+|+...+ + +-.|+.||+++...- .-+.. ......++.|.|.-....+++ ..|
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~--l~d 177 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVD--LSD 177 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhh--ccc
Confidence 44666777778866554 2 337899999863221 11111 112223455555443333333 467
Q ss_pred CeEEEEEccCCceeEE-eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCC--cccEEEEEeCCCC
Q 015650 239 GQVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD--RAEIYSLAFSSNA 315 (403)
Q Consensus 239 ~~i~v~d~~~~~~~~~-~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~--~~~v~~l~~s~d~ 315 (403)
+.|++..+.......- ..-....++++|+|.|+.++.|-..|+ +.-|. ..++....+.+... ...|.+|.|-...
T Consensus 178 lsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt-~vQy~-P~leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 178 LSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGT-EVQYE-PSLEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred cchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCe-EEEee-cccceeecccCCCcCCCcceeEEEEecce
Confidence 8888776654222111 133456899999999999999999999 77775 45665555544221 2579999998766
Q ss_pred CEEEEE
Q 015650 316 QWLAVS 321 (403)
Q Consensus 316 ~~l~s~ 321 (403)
.++++-
T Consensus 256 eflvvy 261 (1405)
T KOG3630|consen 256 EFLVVY 261 (1405)
T ss_pred eEEEEe
Confidence 666543
No 408
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.19 E-value=0.024 Score=54.85 Aligned_cols=121 Identities=16% Similarity=0.207 Sum_probs=71.4
Q ss_pred CceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEE-----------EcCCCCEEEEEeCCCcEEE
Q 015650 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFA-----------LTQDGQLLATSSTKGTLVR 284 (403)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~-----------~sp~g~~l~s~~~dg~~i~ 284 (403)
....+.|.|---.....+.+..++.|++..........+..|..++..++ ++|||..+++++.||. ++
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~ 260 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VG 260 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cc
Confidence 33445555532222344457788888887776654455555766555433 6899999999999998 88
Q ss_pred EEEcC-----CCcEEEEEecCCCcccEEEEEeCCCC---------CEEEEEe-CCCcEEEEEeecCCCC
Q 015650 285 IFNTL-----DGTLLQEVRRGADRAEIYSLAFSSNA---------QWLAVSS-DKGTVHVFNLKVNSGS 338 (403)
Q Consensus 285 iwd~~-----~~~~~~~~~~~~~~~~v~~l~~s~d~---------~~l~s~~-~dg~v~iwd~~~~~~~ 338 (403)
+|.+. ..+++...+.+...-.|..+ +..+. .++++++ .+..+++|.-..-+..
T Consensus 261 f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 261 FYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 77642 34455555543211233333 43221 1345555 4456899987666554
No 409
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=0.14 Score=50.85 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=68.2
Q ss_pred CCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-
Q 015650 96 DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS- 173 (403)
Q Consensus 96 d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~- 173 (403)
.+..++.|+++| +-..|+...-..+.+.. ....+|.+++|+.++..++.|-.+ |.|.+||+..++.++.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne--~v~~~Vtsvafn~dg~~l~~G~~~-----G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNE--RVQGPVTSVAFNQDGSLLLAGLGD-----GHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCC--ccCCcceeeEecCCCceeccccCC-----CcEEEEEccCCcceeeeee
Confidence 456788888887 87777754311111212 356789999999999999999888 999999999999998887
Q ss_pred cCCceeEE---EEecCce-EEEecCeEEEEEc
Q 015650 174 FRSEVRSV---KLRRDRI-IVVLEQKIFVYNF 201 (403)
Q Consensus 174 ~~~~i~~~---~~~~~~~-~~~~d~~i~i~d~ 201 (403)
+..+..++ .+..++. .+..|..=.+|.+
T Consensus 171 ~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~l 202 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTSQNSKLLTSDTGGSFWKL 202 (1206)
T ss_pred cCCccceEEEEEEeCCCcEEEEccCCCceEEE
Confidence 55554443 3444444 3445544446654
No 410
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.08 E-value=0.026 Score=45.71 Aligned_cols=95 Identities=13% Similarity=0.163 Sum_probs=49.6
Q ss_pred ecCeEEEEEcCC-ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEe-ecC-CceEEEEEcC
Q 015650 192 LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM-AHD-SRIACFALTQ 268 (403)
Q Consensus 192 ~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~-~~~-~~i~~~~~sp 268 (403)
.+|.|++|+..- +.....+...... ..+.-|.++.-.+++.+..++.|+.|+..-.+..-.. .|. .++..+..+.
T Consensus 78 ~dg~v~~~n~n~~g~~~d~~~s~~e~--i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~ 155 (238)
T KOG2444|consen 78 SDGAVYVFNWNLEGAHSDRVCSGEES--IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVG 155 (238)
T ss_pred ccceEEEecCCccchHHHhhhccccc--ceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEec
Confidence 699999998763 1111111111122 2233344433234555678999999998775544433 344 3344444444
Q ss_pred CCCEEEEE--eCCCcEEEEEEcC
Q 015650 269 DGQLLATS--STKGTLVRIFNTL 289 (403)
Q Consensus 269 ~g~~l~s~--~~dg~~i~iwd~~ 289 (403)
.++.|+.+ |.|.. ++.|++.
T Consensus 156 sd~~i~~a~~S~d~~-~k~W~ve 177 (238)
T KOG2444|consen 156 SDEFLKIADTSHDRV-LKKWNVE 177 (238)
T ss_pred CCceEEeeccccchh-hhhcchh
Confidence 44455554 55555 5555553
No 411
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.07 E-value=0.49 Score=46.65 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=53.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC----------CcE---EEEEe------cCCCcccEEEEEeCCC---CC
Q 015650 259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLD----------GTL---LQEVR------RGADRAEIYSLAFSSN---AQ 316 (403)
Q Consensus 259 ~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~----------~~~---~~~~~------~~~~~~~v~~l~~s~d---~~ 316 (403)
-.|..|.++|+|++|+..+..| |.|-.+.. |+. -+++. .......|..+.|+|. +.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~--v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG--VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc--EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3688899999999999988877 55555531 111 11111 1113357899999996 47
Q ss_pred EEEEEeCCCcEEEEEeecCC
Q 015650 317 WLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 317 ~l~s~~~dg~v~iwd~~~~~ 336 (403)
+|++-..|+++++||+...+
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 89999999999999997654
No 412
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.03 E-value=4.3 Score=40.64 Aligned_cols=178 Identities=8% Similarity=0.003 Sum_probs=90.7
Q ss_pred ceEEEEECCCCceeEEEecCCcee-------------EEEEec---CceEEEe------------cCeEEEEEcCCceee
Q 015650 156 NKVMIWDDHQSRCIGELSFRSEVR-------------SVKLRR---DRIIVVL------------EQKIFVYNFADLKLL 207 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~~~~~i~-------------~~~~~~---~~~~~~~------------d~~i~i~d~~~~~~~ 207 (403)
+.|.-.|.++|+.+..+...+.|. .+.-.| ++.+++. +|.|+-+|.++|+.+
T Consensus 270 g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 270 ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 889999999999887765332221 011111 3444441 478999999999999
Q ss_pred eEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEE
Q 015650 208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (403)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd 287 (403)
..+......... ..+.++ .+. ..+...-....+|.+.+.+..-.+...+ .+....+.....-..+. |.-.|
T Consensus 350 W~~~~g~p~~~~--~~~~g~-~~~-~gg~n~W~~~s~D~~~glvy~ptGn~~p----d~~g~~r~~~~n~y~~s-lvALD 420 (764)
T TIGR03074 350 WAWDPGNPDPTA--PPAPGE-TYT-RNTPNSWSVASYDEKLGLVYLPMGNQTP----DQWGGDRTPADEKYSSS-LVALD 420 (764)
T ss_pred eEEecCCCCccc--CCCCCC-Eec-cCCCCccCceEEcCCCCeEEEeCCCccc----cccCCccccCcccccce-EEEEe
Confidence 887642111110 011222 111 1111111233444444443322222111 11011110001112344 77778
Q ss_pred cCCCcEEEEEecCCCc-------ccEEEEEeCC-CCC---EEEEEeCCCcEEEEEeecCCCCCCCC
Q 015650 288 TLDGTLLQEVRRGADR-------AEIYSLAFSS-NAQ---WLAVSSDKGTVHVFNLKVNSGSARSE 342 (403)
Q Consensus 288 ~~~~~~~~~~~~~~~~-------~~v~~l~~s~-d~~---~l~s~~~dg~v~iwd~~~~~~~~~~~ 342 (403)
.++|+..-.++...|. ....-+.+.. +|+ .++.++.+|.++++|-++++.+-..+
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 8888877666542221 0111122222 563 78899999999999999999765543
No 413
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.95 E-value=2.1 Score=36.60 Aligned_cols=157 Identities=12% Similarity=0.049 Sum_probs=85.2
Q ss_pred CeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEE-C
Q 015650 87 TLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD-D 163 (403)
Q Consensus 87 ~i~~i~~s~d~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd-~ 163 (403)
.+.+.++++||+.+|... +++-.||-........ ..+ ....+....|++++...+....+ ...+++. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~-~~~---~g~~l~~PS~d~~g~~W~v~~~~-----~~~~~~~~~ 95 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR-PVL---TGGSLTRPSWDPDGWVWTVDDGS-----GGVRVVRDS 95 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce-eec---cCCccccccccCCCCEEEEEcCC-----CceEEEEec
Confidence 578899999999887765 5554444433333321 111 22367777888876655554444 4555553 3
Q ss_pred CCCcee-EEEe---cCCceeEEEEecCceEEE--e----cCeEEEEEcCC---c------eeeeEeeccCCCceeEEEee
Q 015650 164 HQSRCI-GELS---FRSEVRSVKLRRDRIIVV--L----EQKIFVYNFAD---L------KLLHQIETIANPKGLCAVSQ 224 (403)
Q Consensus 164 ~~~~~~-~~~~---~~~~i~~~~~~~~~~~~~--~----d~~i~i~d~~~---~------~~~~~~~~~~~~~~~~~~~~ 224 (403)
.+++.. ..+. ....|..+.++|||..++ . ++.|++--+.. + ..+.........+..+.|..
T Consensus 96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 333322 2222 122899999999998877 3 67777776542 2 11111112234556777777
Q ss_pred CCCeEEEEeeCCccCeEEE-EEccCCceeEE
Q 015650 225 GVGSLVLVCPGLQKGQVRV-EHYASKRTKFI 254 (403)
Q Consensus 225 ~~~~~~~~~~g~~d~~i~v-~d~~~~~~~~~ 254 (403)
+.. ++++. ...++.+.. ..........+
T Consensus 176 ~~~-L~V~~-~~~~~~~~~~v~~dG~~~~~l 204 (253)
T PF10647_consen 176 DST-LVVLG-RSAGGPVVRLVSVDGGPSTPL 204 (253)
T ss_pred CCE-EEEEe-CCCCCceeEEEEccCCccccc
Confidence 664 33332 334443433 44444443333
No 414
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.95 E-value=0.11 Score=29.96 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=26.2
Q ss_pred ccEEEEEeCCCCC---EEEEEeCCCcEEEEEeec
Q 015650 304 AEIYSLAFSSNAQ---WLAVSSDKGTVHVFNLKV 334 (403)
Q Consensus 304 ~~v~~l~~s~d~~---~l~s~~~dg~v~iwd~~~ 334 (403)
+.|.++.|+|... +|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3689999998554 888888899999999996
No 415
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=2.1 Score=36.55 Aligned_cols=159 Identities=11% Similarity=0.091 Sum_probs=98.5
Q ss_pred eEEEecCCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEcc
Q 015650 169 IGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA 247 (403)
Q Consensus 169 ~~~~~~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~ 247 (403)
+..+....-+..+.++.+-.+++ .+.-++|.|+.+...-..+......-..-.+.-.++..+++- .+.-+.+.|+.
T Consensus 80 ~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVad---lddgfLivdvs 156 (370)
T COG5276 80 LSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVAD---LDDGFLIVDVS 156 (370)
T ss_pred EEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEee---ccCcEEEEECC
Confidence 33444677788899999888888 677899999987654333322222134556666777766653 35556677887
Q ss_pred CCceeEEe----ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcc-cEEEEEeCCCCCEEEEEe
Q 015650 248 SKRTKFIM----AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA-EIYSLAFSSNAQWLAVSS 322 (403)
Q Consensus 248 ~~~~~~~~----~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~-~v~~l~~s~d~~~l~s~~ 322 (403)
....-++. .....-..++. .|++-+.+..|+. +.|-|+.+.....-+. +...+ .+.++..+++..+++..
T Consensus 157 dpssP~lagrya~~~~d~~~v~I--SGn~AYvA~~d~G-L~ivDVSnp~sPvli~-~~n~g~g~~sv~vsdnr~y~vvy- 231 (370)
T COG5276 157 DPSSPQLAGRYALPGGDTHDVAI--SGNYAYVAWRDGG-LTIVDVSNPHSPVLIG-SYNTGPGTYSVSVSDNRAYLVVY- 231 (370)
T ss_pred CCCCceeeeeeccCCCCceeEEE--ecCeEEEEEeCCC-eEEEEccCCCCCeEEE-EEecCCceEEEEecCCeeEEEEc-
Confidence 74432222 22333356666 4667777888999 9999997654332222 11223 78888888776666554
Q ss_pred CCCcEEEEEeecCC
Q 015650 323 DKGTVHVFNLKVNS 336 (403)
Q Consensus 323 ~dg~v~iwd~~~~~ 336 (403)
+.-+.+-|.+..+
T Consensus 232 -~egvlivd~s~~s 244 (370)
T COG5276 232 -DEGVLIVDVSGPS 244 (370)
T ss_pred -ccceEEEecCCCC
Confidence 3346666776665
No 416
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.87 E-value=2.7 Score=38.22 Aligned_cols=79 Identities=10% Similarity=0.119 Sum_probs=40.9
Q ss_pred eEEEEEccC--Cc---eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEE-EcCC-----CcEEEE---EecCC--Cc
Q 015650 240 QVRVEHYAS--KR---TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF-NTLD-----GTLLQE---VRRGA--DR 303 (403)
Q Consensus 240 ~i~v~d~~~--~~---~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iw-d~~~-----~~~~~~---~~~~~--~~ 303 (403)
.|.+++-.. ++ ...+...-.....|++.++| +++ ++.. . |..| |... ++.... +.... +.
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~-~-i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~ 123 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP-D-ILFLRDKDGDDKADGEREVLLSGFGGQINNHH 123 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC-e-EEEEeCCCCCCCCCCccEEEEEccCCCCCccc
Confidence 566665332 22 23333333456889999998 444 4444 3 5544 4421 122111 22110 12
Q ss_pred ccEEEEEeCCCCCEEEEEe
Q 015650 304 AEIYSLAFSSNAQWLAVSS 322 (403)
Q Consensus 304 ~~v~~l~~s~d~~~l~s~~ 322 (403)
.....++|.|||.+.++-+
T Consensus 124 ~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred ccccCceECCCCCEEEecc
Confidence 3477899999998766555
No 417
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.82 E-value=0.17 Score=29.14 Aligned_cols=31 Identities=26% Similarity=0.483 Sum_probs=25.3
Q ss_pred CceEEEEEcCCC---CEEEEEeCCCcEEEEEEcCC
Q 015650 259 SRIACFALTQDG---QLLATSSTKGTLVRIFNTLD 290 (403)
Q Consensus 259 ~~i~~~~~sp~g---~~l~s~~~dg~~i~iwd~~~ 290 (403)
+.+.++.|+|+. .+|+.+-.-|. |.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence 468999999854 48888777788 99999985
No 418
>PHA02713 hypothetical protein; Provisional
Probab=94.76 E-value=2.4 Score=40.93 Aligned_cols=189 Identities=10% Similarity=0.055 Sum_probs=90.2
Q ss_pred CCCEEEEEc-C-C-----cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCce
Q 015650 96 DHGCFAAGT-D-H-----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC 168 (403)
Q Consensus 96 d~~~l~~~~-~-~-----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~ 168 (403)
++.+++.|+ + + .+..||..+........+. ....-..++...+.+++++|... ......+..||..+.+-
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~--~~R~~~~~~~~~g~IYviGG~~~-~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMI--KNRCRFSLAVIDDTIYAIGGQNG-TNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCc--chhhceeEEEECCEEEEECCcCC-CCCCceEEEEECCCCeE
Confidence 566777776 2 1 2667777665433222222 11112233344455555555432 11124688899877643
Q ss_pred eE--EEecCCceeEEEEecCceEEEe---c-----------------------CeEEEEEcCCcee--eeEeeccCCCce
Q 015650 169 IG--ELSFRSEVRSVKLRRDRIIVVL---E-----------------------QKIFVYNFADLKL--LHQIETIANPKG 218 (403)
Q Consensus 169 ~~--~~~~~~~i~~~~~~~~~~~~~~---d-----------------------~~i~i~d~~~~~~--~~~~~~~~~~~~ 218 (403)
.. .+.....-.+++.. ++.+.+. + ..+..||..+.+- +..+... ...
T Consensus 380 ~~~~~mp~~r~~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~--r~~ 456 (557)
T PHA02713 380 KMLPDMPIALSSYGMCVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG--TIR 456 (557)
T ss_pred EECCCCCcccccccEEEE-CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc--ccc
Confidence 22 11111111122222 3443331 1 2477788766432 2222111 111
Q ss_pred eEEEeeCCCeEEEEeeCCcc-----CeEEEEEccC-CceeEEe---ecCCceEEEEEcCCCCEEEEEeCCC--cEEEEEE
Q 015650 219 LCAVSQGVGSLVLVCPGLQK-----GQVRVEHYAS-KRTKFIM---AHDSRIACFALTQDGQLLATSSTKG--TLVRIFN 287 (403)
Q Consensus 219 ~~~~~~~~~~~~~~~~g~~d-----~~i~v~d~~~-~~~~~~~---~~~~~i~~~~~sp~g~~l~s~~~dg--~~i~iwd 287 (403)
. ....-++.+|++ +|..+ ..+..||..+ ..-..+. ........+.+ +|++.++|+.++ . +..||
T Consensus 457 ~-~~~~~~~~IYv~-GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~-~e~yd 531 (557)
T PHA02713 457 P-GVVSHKDDIYVV-CDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYML-QDTFN 531 (557)
T ss_pred C-cEEEECCEEEEE-eCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceee-hhhcC
Confidence 1 122223455544 34221 2467888887 4543322 22222333333 788889999888 6 78888
Q ss_pred cCCCcEEE
Q 015650 288 TLDGTLLQ 295 (403)
Q Consensus 288 ~~~~~~~~ 295 (403)
..+.+-..
T Consensus 532 ~~~~~W~~ 539 (557)
T PHA02713 532 VYTYEWNH 539 (557)
T ss_pred cccccccc
Confidence 87766543
No 419
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.73 E-value=2.5 Score=36.43 Aligned_cols=199 Identities=11% Similarity=0.073 Sum_probs=114.1
Q ss_pred eeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECC------CC-ceeEEEe------cCCceeEEEEecCceE-------
Q 015650 130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH------QS-RCIGELS------FRSEVRSVKLRRDRII------- 189 (403)
Q Consensus 130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~------~~-~~~~~~~------~~~~i~~~~~~~~~~~------- 189 (403)
..-+.++++|.+.+.++.... +...+||.. .. .++..+. .....+.+.|+....+
T Consensus 23 ~N~WGia~~p~~~~WVadngT-----~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~ 97 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGT-----GTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI 97 (336)
T ss_pred cccceeEecCCCCEEEecCCc-----ceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc
Confidence 456778888888777777666 899999976 12 2233333 1245777888753222
Q ss_pred ------EE--ecCeEEEEEcCCcee-----eeEeecc-CCCc-eeEEEeeC--CCeEEEEeeCCccCeEEEEEccCCcee
Q 015650 190 ------VV--LEQKIFVYNFADLKL-----LHQIETI-ANPK-GLCAVSQG--VGSLVLVCPGLQKGQVRVEHYASKRTK 252 (403)
Q Consensus 190 ------~~--~d~~i~i~d~~~~~~-----~~~~~~~-~~~~-~~~~~~~~--~~~~~~~~~g~~d~~i~v~d~~~~~~~ 252 (403)
|. .||+|.-|...-+.. ...+... ...+ .-+++... ++.+|.+ .-..++|.|||-.-.++.
T Consensus 98 ~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaa--dF~~g~IDVFd~~f~~~~ 175 (336)
T TIGR03118 98 TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAA--NFRQGRIDVFKGSFRPPP 175 (336)
T ss_pred ccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEe--ccCCCceEEecCcccccc
Confidence 22 488999998532211 1122211 1222 23555543 3444333 456889999986654332
Q ss_pred EE--------ee-----------cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCC
Q 015650 253 FI--------MA-----------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313 (403)
Q Consensus 253 ~~--------~~-----------~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~ 313 (403)
.- .. ..-.|+-..-.++++.=+.|-.-|. |-+||+ +|+.++.+.....-..-+.|+..|
T Consensus 176 ~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~-VdvFd~-~G~l~~r~as~g~LNaPWG~a~AP 253 (336)
T TIGR03118 176 LPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGY-VNVFTL-NGQLLRRVASSGRLNAPWGLAIAP 253 (336)
T ss_pred CCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcce-EEEEcC-CCcEEEEeccCCcccCCceeeeCh
Confidence 10 00 0011222222333333334444567 999996 788888886433445667787765
Q ss_pred ------CCCEEEEEeCCCcEEEEEeecCCC
Q 015650 314 ------NAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 314 ------d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
.|.+|+---.||+|..||..+++-
T Consensus 254 a~FG~~sg~lLVGNFGDG~InaFD~~sG~~ 283 (336)
T TIGR03118 254 ESFGSLSGALLVGNFGDGTINAYDPQSGAQ 283 (336)
T ss_pred hhhCCCCCCeEEeecCCceeEEecCCCCce
Confidence 455666555799999999998874
No 420
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.67 E-value=0.76 Score=41.53 Aligned_cols=154 Identities=10% Similarity=0.017 Sum_probs=99.0
Q ss_pred EEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCce
Q 015650 89 LHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC 168 (403)
Q Consensus 89 ~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~ 168 (403)
+.+-|...++.|.+...+++.=|.+..........+.....+.|.++.|++|..+++.--.+ ++|.+++....+.
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~-----~~v~f~nf~~d~~ 100 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTS-----KTVDFCNFIPDNS 100 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecC-----ceEEEEecCCCch
Confidence 44556666677777777777777765444333333333455699999999999999988888 9999999754443
Q ss_pred eEEE----e-cCCceeEEEEecCceEEE-ecCeEEEEEcCC-ceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeE
Q 015650 169 IGEL----S-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV 241 (403)
Q Consensus 169 ~~~~----~-~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 241 (403)
...+ + ....|.+..|.....+.. .+..+-+|.... .+.++..+.+.-.+.-..|.++.+-.++++ +-..+.+
T Consensus 101 ~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t-~~~~n~l 179 (657)
T KOG2377|consen 101 QLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST-TVLENVL 179 (657)
T ss_pred hhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec-ccccccc
Confidence 3322 2 344588999988755444 677777776543 344555666777777788888766554443 4233444
Q ss_pred EEEEccC
Q 015650 242 RVEHYAS 248 (403)
Q Consensus 242 ~v~d~~~ 248 (403)
.=+-++.
T Consensus 180 npf~~~~ 186 (657)
T KOG2377|consen 180 NPFHFRA 186 (657)
T ss_pred ccEEEee
Confidence 3344443
No 421
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.53 E-value=3 Score=36.50 Aligned_cols=236 Identities=14% Similarity=0.134 Sum_probs=101.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEe-cc--cCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650 84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRD-FE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (403)
Q Consensus 84 ~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i 160 (403)
-...+..|.|..+..-+++|..+. |+....+....... .. ........++.|..+..+++. .. + +.+
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG-~~------g-~ll 84 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVG-EP------G-LLL 84 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETTTE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEE-ET------T-EEE
T ss_pred CCCceEEEEEecCCEEEEEecCCE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEc-CC------c-eEE
Confidence 345789999997777788887654 44443333222211 11 011345667778776655543 22 3 334
Q ss_pred EECCCCceeEEEe----cCCceeEEEEecCceEEEecCeEEEEEcCC-cee-eeEeeccCCCceeEEEeeCCCeEEEEee
Q 015650 161 WDDHQSRCIGELS----FRSEVRSVKLRRDRIIVVLEQKIFVYNFAD-LKL-LHQIETIANPKGLCAVSQGVGSLVLVCP 234 (403)
Q Consensus 161 wd~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (403)
.....|+.-..+. .+.....+....++...+....=.||-..+ |+. ..........+..+..++++. ++++
T Consensus 85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~--~vav- 161 (302)
T PF14870_consen 85 HTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGR--YVAV- 161 (302)
T ss_dssp EESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS---EEEE-
T ss_pred EecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCc--EEEE-
Confidence 4444454443332 233334444444444333211122333333 221 111222234455555566665 4444
Q ss_pred CCccCeEEEEEccCCceeEE-eecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEc-CCCcEEEE--EecCCCcccEEEEE
Q 015650 235 GLQKGQVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT-LDGTLLQE--VRRGADRAEIYSLA 310 (403)
Q Consensus 235 g~~d~~i~v~d~~~~~~~~~-~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~-~~~~~~~~--~~~~~~~~~v~~l~ 310 (403)
+.......-||.-...-... ..-...|..|.|.|++.+.+.+ ..|. |++=+. ...+.-.. .......-.+..++
T Consensus 162 s~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a 239 (302)
T PF14870_consen 162 SSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSDDPDDGETWSEPIIPIKTNGYGILDLA 239 (302)
T ss_dssp ETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE-TTEEEEE---B-TTSS--S-EEEEE
T ss_pred ECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-EEEccCCCCccccccccCCcccCceeeEEEE
Confidence 22333444566544332222 2346789999999998876644 6676 777662 22222211 11111223589999
Q ss_pred eCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 311 FSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 311 ~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
|.+++..+++|+ .|.| +...+.++
T Consensus 240 ~~~~~~~wa~gg-~G~l-~~S~DgGk 263 (302)
T PF14870_consen 240 YRPPNEIWAVGG-SGTL-LVSTDGGK 263 (302)
T ss_dssp ESSSS-EEEEES-TT-E-EEESSTTS
T ss_pred ecCCCCEEEEeC-CccE-EEeCCCCc
Confidence 999988888765 4433 23444444
No 422
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.42 E-value=0.33 Score=40.32 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=51.2
Q ss_pred EcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE------ecC------CCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650 266 LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV------RRG------ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (403)
Q Consensus 266 ~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~------~~~------~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~ 333 (403)
+..++.+|++-+.+|. +++||+.+++.+..- -.. .....|..+.++.+|.-|++-+ +|..+.|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGL-LYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCe-EEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4458889999999999 999999988765432 100 1345789999999998877765 5788888876
Q ss_pred cCC
Q 015650 334 VNS 336 (403)
Q Consensus 334 ~~~ 336 (403)
-+.
T Consensus 96 L~~ 98 (219)
T PF07569_consen 96 LGC 98 (219)
T ss_pred cce
Confidence 543
No 423
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.26 E-value=5 Score=37.91 Aligned_cols=116 Identities=9% Similarity=0.048 Sum_probs=68.8
Q ss_pred CCCCCCeEEEEEcCCC-----CEEEEEcCCcEEEEEcC-----CCeeEEEEecccCccee--EEEEeeeCCeEEEeeCCC
Q 015650 82 SSPPPTLLHISFNQDH-----GCFAAGTDHGFRIYNCD-----PFREIFRRDFERGGGIG--VVEMLFRCNILALVGGGP 149 (403)
Q Consensus 82 ~~~~~~i~~i~~s~d~-----~~l~~~~~~~i~iw~~~-----~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~s~~~ 149 (403)
.+.-+.|..+.|.|-+ .+||+-..+.|.||.+. ..+....++.+-....+ -..+.|+|....++.-..
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~ 132 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA 132 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence 4455679999999863 57788778889999984 22333333332112222 235667776544333222
Q ss_pred CCCCCCceEEEEECCC--CceeEEEecCCceeEEEEecCceEEE-e-cC--eEEEEEcC
Q 015650 150 DPQYPLNKVMIWDDHQ--SRCIGELSFRSEVRSVKLRRDRIIVV-L-EQ--KIFVYNFA 202 (403)
Q Consensus 150 d~~~~~~~i~iwd~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~-~-d~--~i~i~d~~ 202 (403)
. ..-.++++.. .+....++..+.|.|.+|.+||..++ . .. .-++||-.
T Consensus 133 ~-----dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 133 R-----DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred C-----ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 1 1223444433 34445566788999999999998776 3 33 46677743
No 424
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.17 E-value=1.9 Score=39.76 Aligned_cols=127 Identities=13% Similarity=0.205 Sum_probs=80.9
Q ss_pred ceEEEEECCCCceeEEEecCCceeEEEEecC---------ceEEE-ecCeEEEEEcCC-ceeeeEe--ecc--CCCceeE
Q 015650 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRD---------RIIVV-LEQKIFVYNFAD-LKLLHQI--ETI--ANPKGLC 220 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~-~d~~i~i~d~~~-~~~~~~~--~~~--~~~~~~~ 220 (403)
..++-.|++.|+.+.+......+ -+.|.|+ +.++. ++..|.-.|.+- |..+... +.. .....+.
T Consensus 490 ~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~ 568 (776)
T COG5167 490 DKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSG 568 (776)
T ss_pred ccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccccccccc
Confidence 67888899999999998844444 5667764 33344 677888788664 3222221 111 1111122
Q ss_pred EEeeCCCeEEEEeeCCccCeEEEEEccCCc-eeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 015650 221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (403)
Q Consensus 221 ~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~ 289 (403)
.-. ... +++. ++..|.|++||.-..+ ...+.+....|..+..+.+|+++++.|.. . |.+-|++
T Consensus 569 ~tT-esG--yIa~-as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-y-llL~d~~ 632 (776)
T COG5167 569 MTT-ESG--YIAA-ASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-Y-LLLTDVP 632 (776)
T ss_pred ccc-cCc--eEEE-ecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-e-EEEEecc
Confidence 212 222 4554 3488999999966644 34467778889999999999998877765 3 6777764
No 425
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.06 E-value=3.8 Score=35.86 Aligned_cols=186 Identities=13% Similarity=0.147 Sum_probs=83.1
Q ss_pred cceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC-ceeEEEe--c----CCceeEEEEecCceEEEecCeEEEEE
Q 015650 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-RCIGELS--F----RSEVRSVKLRRDRIIVVLEQKIFVYN 200 (403)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~-~~~~~~~--~----~~~i~~~~~~~~~~~~~~d~~i~i~d 200 (403)
....+.++.|..+..-++.+.. +. |+....+ +.-.... . ......|.|..+..+++.+..+.+..
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~------g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g~ll~T 86 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAY------GT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPGLLLHT 86 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETT------TE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETTEEEEE
T ss_pred CCCceEEEEEecCCEEEEEecC------CE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCceEEEe
Confidence 4557888888765555555543 43 3333333 3222211 1 23466788877666666554454444
Q ss_pred cCCceeeeEeec---cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC-Cc-ee-EEeecCCceEEEEEcCCCCEEE
Q 015650 201 FADLKLLHQIET---IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KR-TK-FIMAHDSRIACFALTQDGQLLA 274 (403)
Q Consensus 201 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~-~~-~~-~~~~~~~~i~~~~~sp~g~~l~ 274 (403)
...|+.=..+.. .......+....+ ....++. ..|.| |.... +. -+ ....-.+.+..+..++||++++
T Consensus 87 ~DgG~tW~~v~l~~~lpgs~~~i~~l~~-~~~~l~~---~~G~i--y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~va 160 (302)
T PF14870_consen 87 TDGGKTWERVPLSSKLPGSPFGITALGD-GSAELAG---DRGAI--YRTTDGGKTWQAVVSETSGSINDITRSSDGRYVA 160 (302)
T ss_dssp SSTTSS-EE----TT-SS-EEEEEEEET-TEEEEEE---TT--E--EEESSTTSSEEEEE-S----EEEEEE-TTS-EEE
T ss_pred cCCCCCcEEeecCCCCCCCeeEEEEcCC-CcEEEEc---CCCcE--EEeCCCCCCeeEcccCCcceeEeEEECCCCcEEE
Confidence 444433222211 1111112222222 2223332 23433 33222 22 12 2234456788889999999888
Q ss_pred EEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 015650 275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (403)
Q Consensus 275 s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd 331 (403)
++..-.. ..-||--...-...-+. ....|.+|.|+|++.+.+.+ ..|.|++=+
T Consensus 161 vs~~G~~-~~s~~~G~~~w~~~~r~--~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 161 VSSRGNF-YSSWDPGQTTWQPHNRN--SSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp EETTSSE-EEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred EECcccE-EEEecCCCccceEEccC--ccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 7754443 56777432212212221 34789999999998877655 788888776
No 426
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.83 E-value=4.7 Score=38.04 Aligned_cols=148 Identities=9% Similarity=0.034 Sum_probs=84.5
Q ss_pred CCceeEEEEecCceEEEe-----cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCC---CeEEEEeeCCccCeEEEEEc
Q 015650 175 RSEVRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV---GSLVLVCPGLQKGQVRVEHY 246 (403)
Q Consensus 175 ~~~i~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~d~~i~v~d~ 246 (403)
-.++..++|......+.+ +|.+++=|- +.+.. ...+..+.|.|-. .-.++|. .....|.||-+
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viGq----FEhV~GlsW~P~~~~~~paLLAV--QHkkhVtVWqL 89 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIGQ----FEHVHGLSWAPPCTADTPALLAV--QHKKHVTVWQL 89 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCCc---cEeec----cceeeeeeecCcccCCCCceEEE--eccceEEEEEe
Confidence 356778888654444432 445444332 22222 2345667777742 1134555 35788999987
Q ss_pred cC-----Cc-eeEEe-ecCC----ceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC--cEEEEEecCCCcccEEEEEeCC
Q 015650 247 AS-----KR-TKFIM-AHDS----RIACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQEVRRGADRAEIYSLAFSS 313 (403)
Q Consensus 247 ~~-----~~-~~~~~-~~~~----~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~--~~~~~~~~~~~~~~v~~l~~s~ 313 (403)
.- .+ +.... .... --..+.|+|....|+.-..... -.++++... +....+. ..+.|.|.+|.+
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv-SV~~sV~~d~srVkaDi~---~~G~IhCACWT~ 165 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV-SVLPSVHCDSSRVKADIK---TSGLIHCACWTK 165 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce-eEeeeeeeCCceEEEecc---CCceEEEEEecC
Confidence 63 11 11111 1111 1245679999999887666553 345555433 3333444 457899999999
Q ss_pred CCCEEEEEe-CCCcEEEEEeecC
Q 015650 314 NAQWLAVSS-DKGTVHVFNLKVN 335 (403)
Q Consensus 314 d~~~l~s~~-~dg~v~iwd~~~~ 335 (403)
||+.|+++- ..=.-+|||=...
T Consensus 166 DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cCCEEEEEeCCeEEEEEecCchh
Confidence 999887663 3334677775544
No 427
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.68 E-value=3.5 Score=34.07 Aligned_cols=98 Identities=13% Similarity=0.184 Sum_probs=64.0
Q ss_pred CCceEEEEEcCCCCEEEE-EeCCCcEEEEEE--cCCCc-----EEEEEecCC--CcccEEEEEeCCCCCEEEEEeCCCcE
Q 015650 258 DSRIACFALTQDGQLLAT-SSTKGTLVRIFN--TLDGT-----LLQEVRRGA--DRAEIYSLAFSSNAQWLAVSSDKGTV 327 (403)
Q Consensus 258 ~~~i~~~~~sp~g~~l~s-~~~dg~~i~iwd--~~~~~-----~~~~~~~~~--~~~~v~~l~~s~d~~~l~s~~~dg~v 327 (403)
-.--+.++|+.+.+.++. -+.+-. |.-|| +.+|. .+..++... ..-..-.++..-+|.+.+++-..++|
T Consensus 157 v~IsNgl~Wd~d~K~fY~iDsln~~-V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V 235 (310)
T KOG4499|consen 157 VGISNGLAWDSDAKKFYYIDSLNYE-VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTV 235 (310)
T ss_pred ccCCccccccccCcEEEEEccCceE-EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEE
Confidence 334467889888877754 444555 76687 55543 333333210 01122345556688888888889999
Q ss_pred EEEEeecCCCCCCCCCCCCCCCCCcccccccccccccceeeeeeeeEEEEEeCCCceEEEeccC
Q 015650 328 HVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQ 391 (403)
Q Consensus 328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~d 391 (403)
...|..+++. +.+++++...+++++|...
T Consensus 236 ~~~dp~tGK~-----------------------------------L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 236 QKVDPTTGKI-----------------------------------LLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EEECCCCCcE-----------------------------------EEEEEcCCCceEEEEecCC
Confidence 9999999984 4457888888999999554
No 428
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=93.43 E-value=7.5 Score=37.14 Aligned_cols=189 Identities=14% Similarity=0.160 Sum_probs=111.7
Q ss_pred CeEEEeeCCCC-----CCCCCceEEEEECCCCceeEEEe---cCCceeEEEEecCceEEEe-c--CeEEEEEcCCceeee
Q 015650 140 NILALVGGGPD-----PQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVL-E--QKIFVYNFADLKLLH 208 (403)
Q Consensus 140 ~~~~~~s~~~d-----~~~~~~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~-d--~~i~i~d~~~~~~~~ 208 (403)
..+.+++.... ..-..+.|.+.| .+.+.+..+. ..+.|.++.|-.|.-++++ . .-+++.|+.+.+..+
T Consensus 283 G~LRvaTT~~~~~~~~~~~s~N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~ 361 (521)
T PF09826_consen 283 GYLRVATTSGNWWWDSEDTSSNNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPANPK 361 (521)
T ss_pred CEEEEEEecCcccccCCCCceEEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCCCc
Confidence 45556665421 112237788888 7777777777 5778999999999999983 2 358899998754443
Q ss_pred EeeccCCCceeEEEeeCCCeEEEEeeCCccC----------eEEEEEccCC----ceeEEee-cC-------CceEEEEE
Q 015650 209 QIETIANPKGLCAVSQGVGSLVLVCPGLQKG----------QVRVEHYASK----RTKFIMA-HD-------SRIACFAL 266 (403)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~----------~i~v~d~~~~----~~~~~~~-~~-------~~i~~~~~ 266 (403)
.+-..+-+-.+--++|-++..++..+-..+. +|.+||+... ++....- .. ..-.++.|
T Consensus 362 vlGeLKIPGfS~YLHP~~e~~LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~ 441 (521)
T PF09826_consen 362 VLGELKIPGFSDYLHPYDENHLLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLF 441 (521)
T ss_pred eeeEEECccchhceeECCCCeEEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEE
Confidence 3322223334555677677767766222222 4778998762 1111111 11 12346788
Q ss_pred cCCCCEEEEEeC-------CCcEEEEEEcC-C-C-cEEEEEecCCCcc-------cEEEEEeCCCCCEEEEEeCCCcEEE
Q 015650 267 TQDGQLLATSST-------KGTLVRIFNTL-D-G-TLLQEVRRGADRA-------EIYSLAFSSNAQWLAVSSDKGTVHV 329 (403)
Q Consensus 267 sp~g~~l~s~~~-------dg~~i~iwd~~-~-~-~~~~~~~~~~~~~-------~v~~l~~s~d~~~l~s~~~dg~v~i 329 (403)
+++.++|+.--. -.. +.|+++. . + +....+. |.. .+....+. +..|.+.+ ++.|++
T Consensus 442 ~~~~~ll~~Pv~~~~~~~~~~g-~~v~~i~~~~g~~~~g~i~---h~~~~~~~~~~~~R~lyi--~d~lYtvS-~~~i~~ 514 (521)
T PF09826_consen 442 DKEKNLLAFPVSSSYGYFNFQG-AYVFSIDPEDGFTLKGKIT---HPSPDYYYSYQIQRSLYI--GDTLYTVS-DNGIKA 514 (521)
T ss_pred eCCCCEEEEEEEEccCccccce-EEEEEEeCCCCeEEEEEEE---ccCcccccccceeEEEEE--CCEEEEEE-CCEEEE
Confidence 888887764322 123 7888876 2 2 2333333 333 25555553 44676666 557999
Q ss_pred EEeecCC
Q 015650 330 FNLKVNS 336 (403)
Q Consensus 330 wd~~~~~ 336 (403)
+|+++.+
T Consensus 515 ~~l~t~~ 521 (521)
T PF09826_consen 515 YDLNTLE 521 (521)
T ss_pred EehHhcC
Confidence 9988753
No 429
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.42 E-value=4.5 Score=34.64 Aligned_cols=194 Identities=7% Similarity=0.047 Sum_probs=113.8
Q ss_pred cceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe---cCCceeEEEEecCceEEE-ecCeEEEEEcCC
Q 015650 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV-LEQKIFVYNFAD 203 (403)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~ 203 (403)
...-+..+.++.+..+++-.+ .-++|.|+.+...-..+. ..+--.++..+-+-.+++ .|.-+.++|+.+
T Consensus 85 ~~~l~~Dv~vse~yvyvad~s-------sGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsd 157 (370)
T COG5276 85 ARDLFADVRVSEEYVYVADWS-------SGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred hhhhhheeEecccEEEEEcCC-------CceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCC
Confidence 334566777787777777655 458999998765433333 334556666666666666 477788888876
Q ss_pred cee---eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeec---CCceEEEEEcCCCCEEEEEe
Q 015650 204 LKL---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSS 277 (403)
Q Consensus 204 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~s~~ 277 (403)
.+. .............+++ .++.-++++ .|+-+.+.|+.....-.+.+| ...+.++..+++..+++..
T Consensus 158 pssP~lagrya~~~~d~~~v~I--SGn~AYvA~---~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy- 231 (370)
T COG5276 158 PSSPQLAGRYALPGGDTHDVAI--SGNYAYVAW---RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY- 231 (370)
T ss_pred CCCceeeeeeccCCCCceeEEE--ecCeEEEEE---eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc-
Confidence 432 2222222222223343 455656664 678899999988554444443 3367888887776666543
Q ss_pred CCCcEEEEEEcCCCcEEEEEecCCCcccEEEE-EeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650 278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL-AFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 278 ~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l-~~s~d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
+.. +.+-|..+.+....+-.- ....+.++ .+.-.+++......+.-+.+-|+.++..
T Consensus 232 -~eg-vlivd~s~~ssp~~~gsy-et~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~s 289 (370)
T COG5276 232 -DEG-VLIVDVSGPSSPTVFGSY-ETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPS 289 (370)
T ss_pred -ccc-eEEEecCCCCCceEeecc-ccCCcccccceecccceeeeeccccCceeEeccCCCC
Confidence 333 778887665533333211 12222222 2333466666666677788888877653
No 430
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.36 E-value=7.3 Score=36.85 Aligned_cols=136 Identities=9% Similarity=0.014 Sum_probs=66.3
Q ss_pred CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEeecCCc---eEEEEEcCCC
Q 015650 194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSR---IACFALTQDG 270 (403)
Q Consensus 194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~---i~~~~~sp~g 270 (403)
..+.++|. .|.....+.........+...+++. ++.. ....+..+|+.++........... =..+...|+|
T Consensus 128 ~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~--ll~~---~~~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 128 SYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGN--LLIG---SGNRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp EEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS---EEEE---EBTEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred ceEEEECC-CccEEEEEccCccccceeeEcCCCC--EEEe---cCCceEEEcCCCCEEEeeecCCcccccccccEECCCC
Confidence 46777774 4666655544333322244445544 4443 237888888877655443322211 2456788999
Q ss_pred CEEEEEeC-------------CCcEEEEEEcCCCcEEEEEecCCCc-------------------------ccEEEEEeC
Q 015650 271 QLLATSST-------------KGTLVRIFNTLDGTLLQEVRRGADR-------------------------AEIYSLAFS 312 (403)
Q Consensus 271 ~~l~s~~~-------------dg~~i~iwd~~~~~~~~~~~~~~~~-------------------------~~v~~l~~s 312 (403)
++|+.+.. ... |..+| .+|+.+..+....|- --++++.+.
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 99987772 112 55566 667666654421110 247899998
Q ss_pred C-CCCEEEEEeCCCcEEEEEeecCCC
Q 015650 313 S-NAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 313 ~-d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
+ ++.+|+++-.-..|...|.++++.
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~i 305 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGKI 305 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred CCCCeEEEEcCcceEEEEEECCCCcE
Confidence 8 555666655555777777666654
No 431
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.08 E-value=0.82 Score=26.12 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=25.2
Q ss_pred CCCCEEEEEeC-CCcEEEEEEcCCCcEEEEEecC
Q 015650 268 QDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRG 300 (403)
Q Consensus 268 p~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~ 300 (403)
|++++|+++.. ++. |.++|..+++.+..+..+
T Consensus 1 pd~~~lyv~~~~~~~-v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNT-VSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCE-EEEEECCCCeEEEEEECC
Confidence 57887777665 556 999999999998888754
No 432
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.90 E-value=0.73 Score=38.28 Aligned_cols=66 Identities=12% Similarity=0.177 Sum_probs=44.0
Q ss_pred eEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEE---------------ecCCceeEEEEecCceEEE--ec
Q 015650 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL---------------SFRSEVRSVKLRRDRIIVV--LE 193 (403)
Q Consensus 131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~~~--~d 193 (403)
.+..+....+...+++.. |.+++||+.+++.+..- .....|..+.++.+|.-++ .+
T Consensus 14 ~~~~l~~~~~~Ll~iT~~-------G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn 86 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSS-------GLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN 86 (219)
T ss_pred ceEEEEeCCCEEEEEeCC-------CeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC
Confidence 444455555555555554 99999999998765433 1234577778887777666 67
Q ss_pred CeEEEEEcCC
Q 015650 194 QKIFVYNFAD 203 (403)
Q Consensus 194 ~~i~i~d~~~ 203 (403)
|..+.|+..-
T Consensus 87 g~~y~y~~~L 96 (219)
T PF07569_consen 87 GDSYSYSPDL 96 (219)
T ss_pred CCEEEecccc
Confidence 8888888543
No 433
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.81 E-value=5.5 Score=41.24 Aligned_cols=160 Identities=16% Similarity=0.309 Sum_probs=95.4
Q ss_pred EEecCCceeEEEEecC--ceEEEecCeEEEEEcCCceeeeEeeccCCCceeEEE-eeC-------CCeEEEEeeCCccCe
Q 015650 171 ELSFRSEVRSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAV-SQG-------VGSLVLVCPGLQKGQ 240 (403)
Q Consensus 171 ~~~~~~~i~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~g~~d~~ 240 (403)
.+.+...-..+-+-|. .-++..|+.+.+|+.+++.....+.+..+.|..+.+ .|. =+++++++ .--.
T Consensus 74 q~~~~~~~~~mGiFpeI~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva---T~~e 150 (1311)
T KOG1900|consen 74 QFSNIECKTDMGIFPEIGRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA---TPVE 150 (1311)
T ss_pred HhcCcceeeeeccchhhcceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec---ccce
Confidence 3333333444555553 334447999999999997777777666665554433 222 23344443 2244
Q ss_pred EEEEEccC----Ccee------EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEE--EEcCCC---c-E-----------
Q 015650 241 VRVEHYAS----KRTK------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRI--FNTLDG---T-L----------- 293 (403)
Q Consensus 241 i~v~d~~~----~~~~------~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~i--wd~~~~---~-~----------- 293 (403)
|.++-+.. .... .+......|.|+....+|+.+++| .||. |+= |...++ + +
T Consensus 151 i~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~-lyEl~Yq~~~gWf~~rc~Kiclt~s~ls 228 (1311)
T KOG1900|consen 151 IVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGN-LYELVYQAEDGWFGSRCRKICLTKSVLS 228 (1311)
T ss_pred EEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCCC-EEEEEEeccCchhhcccccccCchhHHH
Confidence 55543322 2221 222335678899988899877755 5555 442 222221 1 1
Q ss_pred -----EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 294 -----LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 294 -----~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
+..+. +.+..+|..|.....-..|.+-+..|+|.+|++....
T Consensus 229 ~lvPs~~~~~-~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 229 SLVPSLLSVP-GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred HhhhhhhcCC-CCCCCcceeeEeccccceeeeeccCceEEEEEccCCC
Confidence 11111 2356799999998888899999999999999998844
No 434
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.26 E-value=4 Score=37.19 Aligned_cols=79 Identities=18% Similarity=0.279 Sum_probs=55.2
Q ss_pred ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEE--EEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL--QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (403)
Q Consensus 256 ~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~--~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~ 333 (403)
...++|.++.|++|.+.||.--.+.. |.+++....+.. ...+.......|....|+.. .-+|..+..| +-+|-+.
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~-v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKT-VDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVL 140 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCce-EEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEc
Confidence 34679999999999999999999999 999987432221 12222223356999999865 6666666555 7777776
Q ss_pred cCCC
Q 015650 334 VNSG 337 (403)
Q Consensus 334 ~~~~ 337 (403)
..+.
T Consensus 141 pekr 144 (657)
T KOG2377|consen 141 PEKR 144 (657)
T ss_pred hhhh
Confidence 6553
No 435
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.19 E-value=8.3 Score=34.49 Aligned_cols=95 Identities=14% Similarity=0.175 Sum_probs=53.3
Q ss_pred eEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCce---eEEEe-----cCCceeEEEEecC----ceEEE--e-c--
Q 015650 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC---IGELS-----FRSEVRSVKLRRD----RIIVV--L-E-- 193 (403)
Q Consensus 131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~---~~~~~-----~~~~i~~~~~~~~----~~~~~--~-d-- 193 (403)
.-+.|+|.|++.++++.- . |.|++++ ..+.. +..+. .......++++|+ +.+.+ . .
T Consensus 3 ~P~~~a~~pdG~l~v~e~-~-----G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~ 75 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAER-S-----GRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADE 75 (331)
T ss_dssp SEEEEEEETTSCEEEEET-T-----TEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-T
T ss_pred CceEEEEeCCCcEEEEeC-C-----ceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccC
Confidence 346889999988888765 5 9999999 44543 22231 3456789999994 44333 2 1
Q ss_pred ------CeEEEEEcCCc-------eee-eEeec---cCCCceeEEEeeCCCeEEEEe
Q 015650 194 ------QKIFVYNFADL-------KLL-HQIET---IANPKGLCAVSQGVGSLVLVC 233 (403)
Q Consensus 194 ------~~i~i~d~~~~-------~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~ 233 (403)
..|.-|.+..+ +.+ ..+.. ..+....+.|.|++ .+|+.+
T Consensus 76 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~ 131 (331)
T PF07995_consen 76 DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSV 131 (331)
T ss_dssp SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEE
T ss_pred CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEe
Confidence 24555555433 111 12222 23344568899887 566555
No 436
>PHA03098 kelch-like protein; Provisional
Probab=91.69 E-value=13 Score=35.80 Aligned_cols=194 Identities=15% Similarity=0.172 Sum_probs=86.2
Q ss_pred eeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-c-CCceeEEEEecCceEEEe-------cCeEEEEEcCCceee
Q 015650 137 FRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-F-RSEVRSVKLRRDRIIVVL-------EQKIFVYNFADLKLL 207 (403)
Q Consensus 137 ~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~-~~~i~~~~~~~~~~~~~~-------d~~i~i~d~~~~~~~ 207 (403)
...+..++++|..........+..||..+.+....-. . ...-.+++...+..+++. -..+..||..+.+-.
T Consensus 292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 3445555555543211111367888887765432211 1 111122232333333331 135778887765322
Q ss_pred eEeeccCCCceeEEEeeCCCeEEEEeeCCc-c----CeEEEEEccCCceeEEeecCC--ceEEEEEcCCCCEEEEEeCC-
Q 015650 208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQ-K----GQVRVEHYASKRTKFIMAHDS--RIACFALTQDGQLLATSSTK- 279 (403)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-d----~~i~v~d~~~~~~~~~~~~~~--~i~~~~~sp~g~~l~s~~~d- 279 (403)
.. .....+....+....++.+++. +|.. + ..+..||..+..-........ .-.++. .-++++++.|+.+
T Consensus 372 ~~-~~lp~~r~~~~~~~~~~~iYv~-GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~ 448 (534)
T PHA03098 372 EE-PPLIFPRYNPCVVNVNNLIYVI-GGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGISY 448 (534)
T ss_pred eC-CCcCcCCccceEEEECCEEEEE-CCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCccC
Confidence 11 1111111112222234455544 3421 1 457888887755433321111 011222 2366666777643
Q ss_pred -------CcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC-----CcEEEEEeecCC
Q 015650 280 -------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS 336 (403)
Q Consensus 280 -------g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~d-----g~v~iwd~~~~~ 336 (403)
.. +.+||..+.+-...-...........+.+ ++++++.|+.+ ..|.+||.++.+
T Consensus 449 ~~~~~~~~~-v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 449 IDNIKVYNI-VESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCCcccce-EEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 23 78889877654322111001111122222 67777777654 457777776654
No 437
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=91.48 E-value=7 Score=36.35 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=25.9
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650 304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (403)
Q Consensus 304 ~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~ 335 (403)
..|.+++..+..+.|++...+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 34999999998899999999999999999863
No 438
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.36 E-value=5.3 Score=36.67 Aligned_cols=40 Identities=8% Similarity=-0.118 Sum_probs=30.6
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCee
Q 015650 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE 118 (403)
Q Consensus 79 ~~~~~~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~ 118 (403)
..+......+.+|..+|++++.|+.++-| |.|+|+..+..
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v 341 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV 341 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence 44555667799999999999888876555 99999876543
No 439
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.30 E-value=10 Score=33.80 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=42.1
Q ss_pred ceEEEEEcCCCCEEEEEeCC------CcEEEEEEcCCCcEEEEEec-------------CCCcccEEEEEeCCCCCEEEE
Q 015650 260 RIACFALTQDGQLLATSSTK------GTLVRIFNTLDGTLLQEVRR-------------GADRAEIYSLAFSSNAQWLAV 320 (403)
Q Consensus 260 ~i~~~~~sp~g~~l~s~~~d------g~~i~iwd~~~~~~~~~~~~-------------~~~~~~v~~l~~s~d~~~l~s 320 (403)
...+|++.++|.++++.-.+ .. |+.++.. |+.+..+.. ...+...-+|+++|||+.|++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~-I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPR-IRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCE-EEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 34578887788877766556 56 8888865 766555421 113356889999999997766
Q ss_pred Ee
Q 015650 321 SS 322 (403)
Q Consensus 321 ~~ 322 (403)
+.
T Consensus 164 ~~ 165 (326)
T PF13449_consen 164 AM 165 (326)
T ss_pred EE
Confidence 54
No 440
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.23 E-value=0.028 Score=50.68 Aligned_cols=135 Identities=19% Similarity=0.274 Sum_probs=88.9
Q ss_pred eeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE----ecCeEEEEEcCCce
Q 015650 130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLK 205 (403)
Q Consensus 130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~d~~i~i~d~~~~~ 205 (403)
.......|.+.+.-++.++.+ ..+..|| +.++.+.....+....+++|..++..++ ..+.+++||+.+..
T Consensus 35 v~pi~~~w~~e~~nlavaca~-----tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey 108 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACAN-----TIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY 108 (615)
T ss_pred cccceeeEecCCCceehhhhh-----hHHHhhh-hhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence 334445555555445555554 6788888 5666666666777788899988876655 47899999997632
Q ss_pred eeeEee-ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEee-cCCceEEEEEcCCCCEEE
Q 015650 206 LLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLA 274 (403)
Q Consensus 206 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~-~~~~i~~~~~sp~g~~l~ 274 (403)
. ++++ +....-....|++....+.+ |...|.+.+++....+.....+ |...+.++++.+.+..+.
T Consensus 109 t-qqLE~gg~~s~sll~wsKg~~el~i---g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 109 T-QQLESGGTSSKSLLAWSKGTPELVI---GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred H-HHHhccCcchHHHHhhccCCccccc---cccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence 2 2222 22223334666666554433 3477899999988866555555 888999999998875443
No 441
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=91.22 E-value=8.2 Score=34.93 Aligned_cols=170 Identities=16% Similarity=0.188 Sum_probs=92.0
Q ss_pred ceEEEEECCCCceeEEEe---cCCceeEEEEecCceEEEe---cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeE
Q 015650 156 NKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (403)
+.|+|.| +....+..++ ....|.++.|..|-.++++ -.-+.+.|+.+.+.-+.+....-+-.+--++|-+++.
T Consensus 406 N~vYilD-e~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~ 484 (603)
T COG4880 406 NAVYILD-ENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENR 484 (603)
T ss_pred ceeEEEc-CCCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccCCCc
Confidence 3455555 4555666665 5778999999999888883 3457888988765444443333333455678888888
Q ss_pred EEEeeCCccCeE--EEEEccC----CceeE--EeecC----CceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEE
Q 015650 230 VLVCPGLQKGQV--RVEHYAS----KRTKF--IMAHD----SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV 297 (403)
Q Consensus 230 ~~~~~g~~d~~i--~v~d~~~----~~~~~--~~~~~----~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~ 297 (403)
++.. |..+|.+ .+||+.. ++... +..-- ..-.+..|+|.-.++..-...+. .|+-++.|..+..-
T Consensus 485 ~lGv-G~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~g--yif~iedg~kl~k~ 561 (603)
T COG4880 485 LLGV-GAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGG--YIFFIEDGSKLRKR 561 (603)
T ss_pred EEEe-ecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEecccCcc--EEEEEecCceeeeh
Confidence 8876 5566654 5677765 11111 11000 01123445555555444333443 36666676433322
Q ss_pred ecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650 298 RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (403)
Q Consensus 298 ~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~ 334 (403)
. .+...+...-|..| +|...+.. .+.++|-++
T Consensus 562 ~--e~k~na~RA~fi~d--ylY~vg~~-ev~~ldens 593 (603)
T COG4880 562 A--ERKLNADRAFFIKD--YLYLVGGN-EVWKLDENS 593 (603)
T ss_pred h--hhcccceeeEEecc--eEEEeccc-eeEEeccch
Confidence 1 24445555556554 44433322 344444433
No 442
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.14 E-value=7.4 Score=31.85 Aligned_cols=134 Identities=18% Similarity=0.213 Sum_probs=76.8
Q ss_pred CeEEEeeCCCCCCCCCceEEEEECCC--CceeEEEecCCceeEEEEecCceEEEe------cC---eEEEE-EcCC----
Q 015650 140 NILALVGGGPDPQYPLNKVMIWDDHQ--SRCIGELSFRSEVRSVKLRRDRIIVVL------EQ---KIFVY-NFAD---- 203 (403)
Q Consensus 140 ~~~~~~s~~~d~~~~~~~i~iwd~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~------d~---~i~i~-d~~~---- 203 (403)
|.+++++++ +.|.+|++.+ .+.+..|..-+.|..+.++..|.++++ .. .+++| |.+.
T Consensus 29 d~Lfva~~g-------~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 29 DALFVAASG-------CKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred ceEEEEcCC-------CEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 566666555 7899999883 356677776789999999999999982 22 56665 2221
Q ss_pred ceeee-Eeec---------------------cCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCce-----eEEe-
Q 015650 204 LKLLH-QIET---------------------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----KFIM- 255 (403)
Q Consensus 204 ~~~~~-~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~-----~~~~- 255 (403)
.+.+. .+-+ ...+..+++..|-...+++++ ++.+.+|.+..+.. ..+.
T Consensus 102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~----~~~l~lf~l~~~~~~~~~~~~lDF 177 (215)
T PF14761_consen 102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC----GNKLVLFTLKYQTIQSEKFSFLDF 177 (215)
T ss_pred CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc----CCEEEEEEEEEEEEecccccEEec
Confidence 11111 1111 112334566666655555543 57899998765333 1111
Q ss_pred -----ec-C-CceEEEEEcCCCCEEEEEeCCCcEEEEEEc
Q 015650 256 -----AH-D-SRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (403)
Q Consensus 256 -----~~-~-~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~ 288 (403)
.| . -....++| -+.|+|..+... ++++.+
T Consensus 178 e~~l~~~~~~~~p~~v~i--c~~yiA~~s~~e--v~Vlkl 213 (215)
T PF14761_consen 178 ERSLIDHIDNFKPTQVAI--CEGYIAVMSDLE--VLVLKL 213 (215)
T ss_pred hhhhhheecCceEEEEEE--EeeEEEEecCCE--EEEEEE
Confidence 11 1 12344555 456777766553 677654
No 443
>PHA03098 kelch-like protein; Provisional
Probab=91.05 E-value=15 Score=35.35 Aligned_cols=191 Identities=13% Similarity=0.135 Sum_probs=86.3
Q ss_pred CCCCEEEEEc-CC------cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCc
Q 015650 95 QDHGCFAAGT-DH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (403)
Q Consensus 95 ~d~~~l~~~~-~~------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~ 167 (403)
.++.+++.|+ +. .+..||..+.+-.....+. ....-.++....+..++++|... ......+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~R~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELI--YPRKNPGVTVFNNRIYVIGGIYN-SISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCC--cccccceEEEECCEEEEEeCCCC-CEecceEEEEcCCCCc
Confidence 3556666665 21 2566776655443222221 11112223333455555555432 1112467888887664
Q ss_pred eeEE--EecCCceeEEEEecCceEEEe----c----CeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCc
Q 015650 168 CIGE--LSFRSEVRSVKLRRDRIIVVL----E----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (403)
Q Consensus 168 ~~~~--~~~~~~i~~~~~~~~~~~~~~----d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 237 (403)
-... +.....-.+++...+..+++. + +.+..||+.+.+-...-..........+... ++.+++. +|..
T Consensus 370 W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~-GG~~ 447 (534)
T PHA03098 370 WREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH-DGKIYVI-GGIS 447 (534)
T ss_pred eeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE-CCEEEEE-CCcc
Confidence 3321 111111122333333334431 1 3588899876533221111111111122222 3444444 3422
Q ss_pred c-------CeEEEEEccCCceeEEeec---CCceEEEEEcCCCCEEEEEeCC-----CcEEEEEEcCCCcE
Q 015650 238 K-------GQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGTL 293 (403)
Q Consensus 238 d-------~~i~v~d~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~s~~~d-----g~~i~iwd~~~~~~ 293 (403)
. ..+.+||..+.+-..+... ......+.+ ++++++.|+.+ .. |.+||..+.+-
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-v~~yd~~~~~W 515 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINE-IEVYDDKTNTW 515 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccce-eEEEeCCCCEE
Confidence 1 2378888887654443211 111122223 67777777754 35 88888776543
No 444
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.97 E-value=7.7 Score=31.75 Aligned_cols=110 Identities=16% Similarity=0.230 Sum_probs=65.4
Q ss_pred EeeCC-CeEEEEeeCCccCeEEEEEccCCceeE--EeecCCceEEEEEcCCCCEEEEEeCCCc-----EEEEE---EcC-
Q 015650 222 VSQGV-GSLVLVCPGLQKGQVRVEHYASKRTKF--IMAHDSRIACFALTQDGQLLATSSTKGT-----LVRIF---NTL- 289 (403)
Q Consensus 222 ~~~~~-~~~~~~~~g~~d~~i~v~d~~~~~~~~--~~~~~~~i~~~~~sp~g~~l~s~~~dg~-----~i~iw---d~~- 289 (403)
+...+ +.++++++ ...|.+|++....... ....-+.|..+.++..|+||++--.+.. .+|+| +..
T Consensus 23 ~c~~g~d~Lfva~~---g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 23 VCCGGPDALFVAAS---GCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred eeccCCceEEEEcC---CCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 33445 56666653 3679999998533222 2234478999999999999998644321 15664 222
Q ss_pred -CCcEE---------------------EEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 290 -DGTLL---------------------QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 290 -~~~~~---------------------~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
...++ ..++-. -...+.+++-.|-..-|+.|+ ++++.+|.+....
T Consensus 100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred ccCCcEEEEEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence 11111 111111 234566777777555555655 5589999998765
No 445
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.61 E-value=3.8 Score=41.69 Aligned_cols=113 Identities=10% Similarity=-0.046 Sum_probs=70.1
Q ss_pred ceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCc------eeEEeec------CCceEEEEEcCCCC-EEEEEeCCCcEE
Q 015650 217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR------TKFIMAH------DSRIACFALTQDGQ-LLATSSTKGTLV 283 (403)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~------~~~~~~~------~~~i~~~~~sp~g~-~l~s~~~dg~~i 283 (403)
+..+.+.+|.....+..+ .++..|..||++.-. ...+..| .....++.|+|.-. ..+.+..|+. |
T Consensus 103 i~~~v~~~D~t~s~v~~t-sng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls-l 180 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVST-SNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS-L 180 (1405)
T ss_pred ceEEEeccCCceEEEEEe-cCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc-h
Confidence 344455555444334432 346678899988621 1112222 23456788888532 2355667887 8
Q ss_pred EEEEcCCCc-EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeec
Q 015650 284 RIFNTLDGT-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (403)
Q Consensus 284 ~iwd~~~~~-~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~ 334 (403)
++..+.... ....+. .....++++|+|.|+.++.|-..|++.-|...-
T Consensus 181 ~V~~~~~~~~~v~s~p---~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP---VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhhhhhhhhcccC---cccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 888764322 222333 346789999999999999999999998886543
No 446
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.37 E-value=13 Score=34.65 Aligned_cols=77 Identities=14% Similarity=0.242 Sum_probs=52.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEEc----------CCCcEEEEEe---------cCCCcccEEEEEeCCCC---CE
Q 015650 260 RIACFALTQDGQLLATSSTKGTLVRIFNT----------LDGTLLQEVR---------RGADRAEIYSLAFSSNA---QW 317 (403)
Q Consensus 260 ~i~~~~~sp~g~~l~s~~~dg~~i~iwd~----------~~~~~~~~~~---------~~~~~~~v~~l~~s~d~---~~ 317 (403)
.|..+..++.|..++-.+.+|. .|..+ ++|+.....+ .....-.+..++|+|+. .+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi--~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGL--MVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEecCCCceEEEecCCee--EEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 4677888999999988888884 44433 2343222111 01111356788999986 57
Q ss_pred EEEEeCCCcEEEEEeecCCCC
Q 015650 318 LAVSSDKGTVHVFNLKVNSGS 338 (403)
Q Consensus 318 l~s~~~dg~v~iwd~~~~~~~ 338 (403)
|..-+.|..|++|++......
T Consensus 183 L~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEEecCcEEEEEecCCcchh
Confidence 777888999999999988765
No 447
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.35 E-value=15 Score=34.21 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=37.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcE--EEEEe---cCCCcccEEEEEeCCCC
Q 015650 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--LQEVR---RGADRAEIYSLAFSSNA 315 (403)
Q Consensus 258 ~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~--~~~~~---~~~~~~~v~~l~~s~d~ 315 (403)
-.....|+|.|||++|++--..|. |++++..++.. +..+. ..........|+++|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~-I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGK-ILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCE-EEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 345689999999988876554688 99998655432 21111 11124678999999874
No 448
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.32 E-value=11 Score=32.61 Aligned_cols=217 Identities=13% Similarity=0.134 Sum_probs=119.3
Q ss_pred CeEEEEEcCCCCEEEEEcCC-cEEEEEcCC-----CeeEEEEeccc--C--cceeEEEEeeeCCeEE------------E
Q 015650 87 TLLHISFNQDHGCFAAGTDH-GFRIYNCDP-----FREIFRRDFER--G--GGIGVVEMLFRCNILA------------L 144 (403)
Q Consensus 87 ~i~~i~~s~d~~~l~~~~~~-~i~iw~~~~-----~~~~~~~~~~~--~--~~~~v~~~~~~~~~~~------------~ 144 (403)
.-+.|+|+|.+.+-++.... ...+||.+. -...+...+.. + .....+.+.|+....+ +
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45789999988776665533 389999861 12122233321 1 1234566666543222 3
Q ss_pred eeCCCCCCCCCceEEEEECCCCce-----eEEEe--cCCce-eEEEEecC--ceEEE----ecCeEEEEEcCCceeeeE-
Q 015650 145 VGGGPDPQYPLNKVMIWDDHQSRC-----IGELS--FRSEV-RSVKLRRD--RIIVV----LEQKIFVYNFADLKLLHQ- 209 (403)
Q Consensus 145 ~s~~~d~~~~~~~i~iwd~~~~~~-----~~~~~--~~~~i-~~~~~~~~--~~~~~----~d~~i~i~d~~~~~~~~~- 209 (403)
+-+.++ |+|.-|...-+.. ...+. ....| ..+++... +.+|. ..++|.+||-. ..++..
T Consensus 104 if~tEd-----GTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~ 177 (336)
T TIGR03118 104 LFVTED-----GTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLP 177 (336)
T ss_pred EEEeCC-----ceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCC
Confidence 334445 8899997432221 12222 12333 45555532 33333 37899999843 222111
Q ss_pred --ee-----ccCCCceeEEEeeCCCeEEEEe-----------eCCccCeEEEEEccCCceeEEe--ecCCceEEEEEcC-
Q 015650 210 --IE-----TIANPKGLCAVSQGVGSLVLVC-----------PGLQKGQVRVEHYASKRTKFIM--AHDSRIACFALTQ- 268 (403)
Q Consensus 210 --~~-----~~~~~~~~~~~~~~~~~~~~~~-----------~g~~d~~i~v~d~~~~~~~~~~--~~~~~i~~~~~sp- 268 (403)
+. ..-.+..+ -.-+..+|+.+ .|...|.|-+||+....++++. +.-..-..|+..|
T Consensus 178 g~F~DP~iPagyAPFnI---qnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa 254 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNV---QNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPE 254 (336)
T ss_pred CCccCCCCCCCCCCcce---EEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChh
Confidence 11 00011111 11122333322 2334579999999988877763 2333456777766
Q ss_pred -----CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCC----cccEEEEEeCC
Q 015650 269 -----DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD----RAEIYSLAFSS 313 (403)
Q Consensus 269 -----~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~----~~~v~~l~~s~ 313 (403)
.|.+|+---.||+ |..||..+++.+..+..... ...++.|.|..
T Consensus 255 ~FG~~sg~lLVGNFGDG~-InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 255 SFGSLSGALLVGNFGDGT-INAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hhCCCCCCeEEeecCCce-eEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 5777876667999 99999999998887775321 13467888865
No 449
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=90.01 E-value=18 Score=34.57 Aligned_cols=103 Identities=13% Similarity=0.114 Sum_probs=59.6
Q ss_pred CCCCEEEEEcCCcEEEEEcCC-CeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCC------------------CCC
Q 015650 95 QDHGCFAAGTDHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ------------------YPL 155 (403)
Q Consensus 95 ~d~~~l~~~~~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~------------------~~~ 155 (403)
-||++|.+..++.|.|++..+ .+......+. -...+..+-.+.+.+.+++...... ...
T Consensus 20 TDG~yIY~v~~~~l~Iida~p~~~~~~~s~I~--~~~~~~eLyl~gdrLvVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (521)
T PF09826_consen 20 TDGEYIYVVSGGRLYIIDAYPAEEMKVVSRID--LDGSPQELYLDGDRLVVIGSSYEYYPREPDIDSESGDTPYYYYKSS 97 (521)
T ss_pred ECCCEEEEEeCCEEEEEECCCchhceEEEEEe--cCCChhheEEcCCEEEEEEeccccccccccccccccccccccCCce
Confidence 389999999988899999843 2222223333 1112666666777666666433200 112
Q ss_pred ceEEEEECCCC---ceeEEEecCCceeEEEEecCceEEEecCeEEEE
Q 015650 156 NKVMIWDDHQS---RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVY 199 (403)
Q Consensus 156 ~~i~iwd~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~d~~i~i~ 199 (403)
-.+.++|+... +.+.++...+...+.....+..++++...+.++
T Consensus 98 t~i~vYDIsD~~~P~~~~~~~~~G~yvsSR~ig~~vy~Vt~~~~~~~ 144 (521)
T PF09826_consen 98 TKITVYDISDPSNPKLLREIEIEGSYVSSRKIGDYVYLVTNSYPNYY 144 (521)
T ss_pred eEEEEEECCCCCCceEEEEEEeeeEEEeEEEECCEEEEEEecCCccc
Confidence 46788887654 334444455555555555556666665555555
No 450
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.23 E-value=2.5 Score=38.41 Aligned_cols=164 Identities=18% Similarity=0.140 Sum_probs=91.8
Q ss_pred eeEEEe-cCCceeEEEEecCceEEE--ecCeEEEEEcCCceee-eEe-eccCCC----ce-eEEEeeCCCeEEEEeeCCc
Q 015650 168 CIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLL-HQI-ETIANP----KG-LCAVSQGVGSLVLVCPGLQ 237 (403)
Q Consensus 168 ~~~~~~-~~~~i~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~-~~~-~~~~~~----~~-~~~~~~~~~~~~~~~~g~~ 237 (403)
.+..+. ....+..+-..|||+.+. ...++.++++.+.... +.+ ....+. +. .+.+-..+..+ ++ +..
T Consensus 212 ~i~~L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SL-Lv--~~~ 288 (733)
T COG4590 212 IIRLLSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSL-LV--VHE 288 (733)
T ss_pred hhhhcCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeE-EE--EcC
Confidence 333344 456788889999999887 5678889988653211 111 111110 11 11111122222 32 257
Q ss_pred cCeEEEE-EccCCce---e---EEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEE
Q 015650 238 KGQVRVE-HYASKRT---K---FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (403)
Q Consensus 238 d~~i~v~-d~~~~~~---~---~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 310 (403)
||.|.-| |.+.... . .++-....+..+.=..+.+-+++-+.+|+ +.++.....+.+ .+.. --..+.-++
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~-L~~f~st~~~~l-L~~~--~~~~~~~~~ 364 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGT-LQSFYSTSEKLL-LFER--AYQAPQLVA 364 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCc-eeeeecccCcce-ehhh--hhcCcceee
Confidence 8888777 5544221 1 11111233333332334556777788888 888765444333 2222 113567789
Q ss_pred eCCCCCEEEEEeCCCcEEEEEeecCCCCC
Q 015650 311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (403)
Q Consensus 311 ~s~d~~~l~s~~~dg~v~iwd~~~~~~~~ 339 (403)
+||.+.+|++- +.|.++++.+++..++-
T Consensus 365 ~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pei 392 (733)
T COG4590 365 MSPNQAYLLSE-DQGKIRLAQLENRNPEI 392 (733)
T ss_pred eCcccchheee-cCCceEEEEecCCCCCc
Confidence 99999999875 56789999999887643
No 451
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.12 E-value=17 Score=35.58 Aligned_cols=68 Identities=16% Similarity=0.073 Sum_probs=42.5
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEE-EecccCcceeEEEEeeeCCeEEEeeCCC
Q 015650 80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFR-RDFERGGGIGVVEMLFRCNILALVGGGP 149 (403)
Q Consensus 80 ~~~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~s~~~ 149 (403)
+.-.|. .+-.+.|+.+..+|++.-++.+.||++-....... .-++ .....|..+.+..+|.++.+.+.
T Consensus 79 ~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e-~~~~~I~ec~~f~~GVavlt~~g 147 (829)
T KOG2280|consen 79 ILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFE-SQMSDIVECRFFHNGVAVLTVSG 147 (829)
T ss_pred HHhcCC-CeeeecccCCceEEEEeccceEEEeecchhhhcccccccc-cccCceeEEEEecCceEEEecCC
Confidence 333344 78889999999999988888899999854322110 0011 22334555666567777766663
No 452
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=88.99 E-value=0.21 Score=48.79 Aligned_cols=98 Identities=13% Similarity=0.153 Sum_probs=58.8
Q ss_pred CeEEEEEccC--Cce------eEEeecCCceEEEEEcC---CCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEE
Q 015650 239 GQVRVEHYAS--KRT------KFIMAHDSRIACFALTQ---DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY 307 (403)
Q Consensus 239 ~~i~v~d~~~--~~~------~~~~~~~~~i~~~~~sp---~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~ 307 (403)
|.+.|||++- +++ .........+.-+.|.| +..++..+-.++. |++........ ..++. |...+.
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~-i~lL~~~ra~~-~l~rs--Hs~~~~ 228 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE-IRLLNINRALR-SLFRS--HSQRVT 228 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc-eeEeeechHHH-HHHHh--cCCCcc
Confidence 5677887654 221 11223334445555554 6667777777777 88776543322 22232 444444
Q ss_pred EE-----------EeCCCCCEEEEEeCCCcEEEEEee-cCCCCCC
Q 015650 308 SL-----------AFSSNAQWLAVSSDKGTVHVFNLK-VNSGSAR 340 (403)
Q Consensus 308 ~l-----------~~s~d~~~l~s~~~dg~v~iwd~~-~~~~~~~ 340 (403)
.+ ..||||+.|+.++.||.+++|.+. +++.+++
T Consensus 229 d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~r 273 (1283)
T KOG1916|consen 229 DMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHR 273 (1283)
T ss_pred cHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHh
Confidence 33 368999999999999999999875 3443333
No 453
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.89 E-value=14 Score=38.34 Aligned_cols=73 Identities=8% Similarity=0.025 Sum_probs=45.1
Q ss_pred ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (403)
Q Consensus 256 ~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~ 335 (403)
.+...+.+..+......+ .+...+. +-+|+.........+... ...++.++..++++..||.+.+||++.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 196 LIEYESLQVLYYSPTKIL-IGFNRGL-VVIKDRASKYVQSAYLPN-------GQLESRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccccccceeeeecCCCcc-eeeeeee-eeehhcccccchhhcccc-------cccCccCCceEEEEEecCCEEeeecCCC
Confidence 344555555554444433 3444555 667765544444334321 1112889999999999999999999997
Q ss_pred CC
Q 015650 336 SG 337 (403)
Q Consensus 336 ~~ 337 (403)
+.
T Consensus 267 ~~ 268 (993)
T KOG1983|consen 267 KL 268 (993)
T ss_pred ce
Confidence 54
No 454
>PHA02790 Kelch-like protein; Provisional
Probab=87.45 E-value=27 Score=33.21 Aligned_cols=170 Identities=11% Similarity=0.040 Sum_probs=76.9
Q ss_pred ceEEEEECCCCceeEEEe--cCCceeEEEEecCceEEEe-----cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCe
Q 015650 156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (403)
Q Consensus 156 ~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (403)
..+..||..+++....-. ....-.+++. -++.+.+. ...+..||..+++-.. +..-..+....+...-++.
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~l~~~r~~~~~~~~~g~ 364 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLYASGVP-ANNKLYVVGGLPNPTSVERWFHGDAAWVN-MPSLLKPRCNPAVASINNV 364 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhcceEEE-ECCEEEEECCcCCCCceEEEECCCCeEEE-CCCCCCCCcccEEEEECCE
Confidence 457778877765332211 1111122222 34444442 1357888876543221 1111112222222223344
Q ss_pred EEEEeeCCc--cCeEEEEEccCCceeEEeec---CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCc
Q 015650 229 LVLVCPGLQ--KGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR 303 (403)
Q Consensus 229 ~~~~~~g~~--d~~i~v~d~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~ 303 (403)
+|++ +|.. ...+..||.++..-.....- ......+. -+|++.+.| |. +.+||.++.+-...-......
T Consensus 365 IYvi-GG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~G---G~-~e~ydp~~~~W~~~~~m~~~r 437 (480)
T PHA02790 365 IYVI-GGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVG---RN-AEFYCESSNTWTLIDDPIYPR 437 (480)
T ss_pred EEEe-cCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEEC---Cc-eEEecCCCCcEeEcCCCCCCc
Confidence 4443 3422 23467788776554332211 11111222 366666666 35 778988766543221111011
Q ss_pred ccEEEEEeCCCCCEEEEEeCC-----CcEEEEEeecCC
Q 015650 304 AEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS 336 (403)
Q Consensus 304 ~~v~~l~~s~d~~~l~s~~~d-----g~v~iwd~~~~~ 336 (403)
.....+. -+|++.+.||.+ ..+..||..+++
T Consensus 438 ~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 438 DNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred cccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 1222222 367788888754 346677776654
No 455
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.44 E-value=22 Score=32.31 Aligned_cols=195 Identities=15% Similarity=0.100 Sum_probs=96.2
Q ss_pred CCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEec
Q 015650 95 QDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF 174 (403)
Q Consensus 95 ~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~ 174 (403)
-+|+.++...++.|.-.|.++...+....+. .....+..-....++..+++.. + +.++.+|..+|+.+....-
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~i~~g~~-~-----g~~y~ld~~~G~~~W~~~~ 139 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGKIYVGSW-D-----GKLYALDASTGTLVWSRNV 139 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCeEEEecc-c-----ceEEEEECCCCcEEEEEec
Confidence 3455555434444555555555544322222 1011111111222666555444 4 7889999889999888874
Q ss_pred CC--ceeEEEEecCceEEEe--cCeEEEEEcCCceeeeEeeccCC-Cce-eEEEeeCCCeEEEEeeCCccCeEEEEEccC
Q 015650 175 RS--EVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIAN-PKG-LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS 248 (403)
Q Consensus 175 ~~--~i~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~ 248 (403)
.. .+..-....++..+.. ++.+...|..+|+.+........ ... .-........+++...+. ++.+.-.|...
T Consensus 140 ~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~-~~~~~a~~~~~ 218 (370)
T COG1520 140 GGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGY-DGILYALNAED 218 (370)
T ss_pred CCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCC-cceEEEEEccC
Confidence 33 2333334445665553 68999999888888777544221 100 000012222333332110 44555566655
Q ss_pred CceeEEeecCCceEE-----E-EE-----cCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEec
Q 015650 249 KRTKFIMAHDSRIAC-----F-AL-----TQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299 (403)
Q Consensus 249 ~~~~~~~~~~~~i~~-----~-~~-----sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~ 299 (403)
+...--..+...+.. . .+ .-++ -++.++.++. +.-.|..+++.+-.+..
T Consensus 219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~-~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGK-LLCLDADTGELIWSFPA 278 (370)
T ss_pred CcEeeeeeeecccCcccccccccccCceEEECC-cEEEEecCCe-EEEEEcCCCceEEEEec
Confidence 443222111111100 0 11 1122 2355667777 88888888888877764
No 456
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=87.30 E-value=36 Score=34.56 Aligned_cols=117 Identities=9% Similarity=0.036 Sum_probs=74.1
Q ss_pred CCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccC------CceeEEeecCC----------ceEEEEEcCCCCEEEEEe
Q 015650 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS------KRTKFIMAHDS----------RIACFALTQDGQLLATSS 277 (403)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~------~~~~~~~~~~~----------~i~~~~~sp~g~~l~s~~ 277 (403)
..+...++|+|.....+.+. ...|...||++.. ........+.+ .-..+.|.++-+.|+.++
T Consensus 145 g~~~aDv~FnP~~~~q~AiV--D~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~ 222 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIV--DEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN 222 (765)
T ss_pred CCccceEEeccCccceEEEE--eccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc
Confidence 34556789998776655444 5789999999922 11111111122 224778988878887776
Q ss_pred CCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCC--CCEEEEEeCCCcEEEEEeecCC
Q 015650 278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN--AQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 278 ~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d--~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
... +.++|+++......+........|.++.-+++ +..++-. ...|...++....
T Consensus 223 r~~--l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~~ 279 (765)
T PF10214_consen 223 RSK--LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSSS 279 (765)
T ss_pred CCc--eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCCC
Confidence 554 89999988766432322224568999999887 3333332 3578888888754
No 457
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.08 E-value=8 Score=37.41 Aligned_cols=38 Identities=29% Similarity=0.375 Sum_probs=29.6
Q ss_pred ceEEEEEcC----CCCEEEEEeCCCcEEEEEEcCCCcEEEEEe
Q 015650 260 RIACFALTQ----DGQLLATSSTKGTLVRIFNTLDGTLLQEVR 298 (403)
Q Consensus 260 ~i~~~~~sp----~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~ 298 (403)
....++++. +..+|++.+.|+. ||+||+.+++++.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~-LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHT-LRIWSLETGQCLATID 257 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSE-EEEEETTTTCEEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCe-EEEEECCCCeEEEEec
Confidence 345566666 7789999999999 9999999999977664
No 458
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.81 E-value=3.5 Score=23.04 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=20.2
Q ss_pred eecCCceEEEEEcCCCCEEEEEeCC---CcEEEEE
Q 015650 255 MAHDSRIACFALTQDGQLLATSSTK---GTLVRIF 286 (403)
Q Consensus 255 ~~~~~~i~~~~~sp~g~~l~s~~~d---g~~i~iw 286 (403)
...........|+|||++|+..+.. |. -.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~-~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGS-FDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SS-EEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCC-cCEE
Confidence 3345567788999999998866654 44 5555
No 459
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=86.70 E-value=35 Score=34.07 Aligned_cols=109 Identities=9% Similarity=0.137 Sum_probs=55.7
Q ss_pred EEEEEcCCCCEEEEEc-CCc-EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCC
Q 015650 89 LHISFNQDHGCFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (403)
Q Consensus 89 ~~i~~s~d~~~l~~~~-~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~ 166 (403)
.++-.+..|+..++|- .+| +-+=|.. .....+.+++-....+..++.+.+-..+.+-. |.|+-|-++..
T Consensus 188 HSvfl~~kgqvY~cGhG~GGRlG~gdeq--~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~-------g~Vys~GlN~~ 258 (1267)
T KOG0783|consen 188 HSVFLTEKGQVYVCGHGAGGRLGFGDEQ--YNFIPKRVPGLIGHKVIQISVSHTHSLVLTKF-------GSVYSWGLNGS 258 (1267)
T ss_pred eeeEecCCCcEEEeccCCCCccCcCccc--ccccccccccccccceEEEEeecceeEEEeec-------ceEEEeecCcc
Confidence 4555566778777775 333 3332211 11111223211334566666666666666654 78888877654
Q ss_pred ceeEEEe-----------------cCCceeEEEEecCceEEEecCeEEEEEcCCcee
Q 015650 167 RCIGELS-----------------FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKL 206 (403)
Q Consensus 167 ~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 206 (403)
..+.... ....|..++--....++..+..|+.|-++.|+.
T Consensus 259 hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hsVawt~~~VY~wGlN~GQl 315 (1267)
T KOG0783|consen 259 HQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHSVAWTDTDVYSWGLNNGQL 315 (1267)
T ss_pred cccCCcCchhhcCchhhhhhHhhcchhhhhhhhcccceeeeeecceEEEecccCcee
Confidence 3322111 111233333322233333688899999988765
No 460
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.57 E-value=3.4 Score=37.59 Aligned_cols=159 Identities=16% Similarity=0.156 Sum_probs=85.4
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEEecccCcce----eEE-EEeeeCCeEEEeeCCCCCCCC
Q 015650 80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI----GVV-EMLFRCNILALVGGGPDPQYP 154 (403)
Q Consensus 80 ~~~~~~~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~~~s~~~d~~~~ 154 (403)
.+....+.|..+-..|||+.|..-+...+.|+++.+......+... .... .|. .+..-..+..+...+.|
T Consensus 215 ~L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~-dspg~~~~~Vte~l~lL~Gg~SLLv~~~d---- 289 (733)
T COG4590 215 LLSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVD-DSPGDSRHQVTEQLYLLSGGFSLLVVHED---- 289 (733)
T ss_pred hcCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhh-cCCCchHHHHHHHHHHHhCceeEEEEcCC----
Confidence 3555667788889999999998877778899988755433322222 1111 111 11112234445555555
Q ss_pred CceEEEE-ECCCC-c----eeEEEe-cCCceeEEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEee
Q 015650 155 LNKVMIW-DDHQS-R----CIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ 224 (403)
Q Consensus 155 ~~~i~iw-d~~~~-~----~~~~~~-~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (403)
|-|.-| |++.+ . .++.++ ...++..+.-..+.+-++ -+|++..+.....+.+ .++........++++|
T Consensus 290 -G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l-L~~~~~~~~~~~~~Sp 367 (733)
T COG4590 290 -GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL-LFERAYQAPQLVAMSP 367 (733)
T ss_pred -CceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce-ehhhhhcCcceeeeCc
Confidence 777776 44333 1 122222 123333322222222222 3667776664333222 2222334567889999
Q ss_pred CCCeEEEEeeCCccCeEEEEEccCC
Q 015650 225 GVGSLVLVCPGLQKGQVRVEHYASK 249 (403)
Q Consensus 225 ~~~~~~~~~~g~~d~~i~v~d~~~~ 249 (403)
.++.+++ .+.|.|+++.+++.
T Consensus 368 ~~~~Ll~----e~~gki~~~~l~Nr 388 (733)
T COG4590 368 NQAYLLS----EDQGKIRLAQLENR 388 (733)
T ss_pred ccchhee----ecCCceEEEEecCC
Confidence 9886543 35688999988763
No 461
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.55 E-value=3.2 Score=40.16 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=26.7
Q ss_pred cEEEEEeCC----CCCEEEEEeCCCcEEEEEeecCCCC
Q 015650 305 EIYSLAFSS----NAQWLAVSSDKGTVHVFNLKVNSGS 338 (403)
Q Consensus 305 ~v~~l~~s~----d~~~l~s~~~dg~v~iwd~~~~~~~ 338 (403)
.+..++.+. +..+|++.+.|++||+||+.+++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCL 253 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence 456666666 6789999999999999999999973
No 462
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.23 E-value=4.2 Score=22.72 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=19.7
Q ss_pred cccEEEEEeCCCCCEEEEEe-CC--CcEEEE
Q 015650 303 RAEIYSLAFSSNAQWLAVSS-DK--GTVHVF 330 (403)
Q Consensus 303 ~~~v~~l~~s~d~~~l~s~~-~d--g~v~iw 330 (403)
...-....|||||++|+-++ .+ |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 35677899999999887665 44 666665
No 463
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.98 E-value=37 Score=33.40 Aligned_cols=193 Identities=13% Similarity=0.147 Sum_probs=99.7
Q ss_pred EEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEE--E--e-cCCceeEEE
Q 015650 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE--L--S-FRSEVRSVK 182 (403)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~--~--~-~~~~i~~~~ 182 (403)
|+||++.. ..+ .+.+- ....+..+.|+.+...++..- + |++.+|++- |+.+.. . + ....|..+.
T Consensus 66 I~If~~sG-~lL-~~~~w--~~~~lI~mgWs~~eeLI~v~k-~-----g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~ 134 (829)
T KOG2280|consen 66 IRIFNISG-QLL-GRILW--KHGELIGMGWSDDEELICVQK-D-----GTVHVYGLL-GEFIESNSVGFESQMSDIVECR 134 (829)
T ss_pred EEEEeccc-cch-HHHHh--cCCCeeeecccCCceEEEEec-c-----ceEEEeecc-hhhhcccccccccccCceeEEE
Confidence 77777642 222 12222 233889999998876655543 3 899999964 333333 1 1 344566666
Q ss_pred EecCceEEE-ecCeEEEEEcCCceeeeEeec---cCCCceeEEEeeCCCeEEEEe-eCCccCeEEEEEccC--CceeEEe
Q 015650 183 LRRDRIIVV-LEQKIFVYNFADLKLLHQIET---IANPKGLCAVSQGVGSLVLVC-PGLQKGQVRVEHYAS--KRTKFIM 255 (403)
Q Consensus 183 ~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~g~~d~~i~v~d~~~--~~~~~~~ 255 (403)
+..+|..+. .+|++.+.+-.....++.++. ..-...+..+...+....+.. ..-..+ ..++-... .....+.
T Consensus 135 ~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~ 213 (829)
T KOG2280|consen 135 FFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALS 213 (829)
T ss_pred EecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccC
Confidence 666777666 567666554222222233322 111112222222222111111 000000 00111111 1112222
Q ss_pred ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCC
Q 015650 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314 (403)
Q Consensus 256 ~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d 314 (403)
.....+..+..||+.++|+-=..+|. |.+-+....+++..+....| ..-..++|.-+
T Consensus 214 ~~~~~~~ki~VS~n~~~laLyt~~G~-i~~vs~D~~~~lce~~~~~~-~~p~qm~Wcgn 270 (829)
T KOG2280|consen 214 WPNSSVVKISVSPNRRFLALYTETGK-IWVVSIDLSQILCEFNCTDH-DPPKQMAWCGN 270 (829)
T ss_pred CCCceEEEEEEcCCcceEEEEecCCc-EEEEecchhhhhhccCCCCC-CchHhceeecC
Confidence 22456788899999999999999999 99888877777777764323 22335666433
No 464
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=85.96 E-value=43 Score=34.07 Aligned_cols=112 Identities=14% Similarity=0.125 Sum_probs=69.4
Q ss_pred CCeEEEEEcCC-CCEEEEEcCCc-EEEEEcCCCe----eEEEEecc--------cCcceeEEEEeeeCCeEEEeeCCCCC
Q 015650 86 PTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFR----EIFRRDFE--------RGGGIGVVEMLFRCNILALVGGGPDP 151 (403)
Q Consensus 86 ~~i~~i~~s~d-~~~l~~~~~~~-i~iw~~~~~~----~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~s~~~d~ 151 (403)
.....++|+|. .+.||+-+..| ..||++.... ..+..... .........+.|.++...++..++
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-- 223 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-- 223 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC--
Confidence 35678999984 46788887666 9999992111 11111100 001123346677666555555554
Q ss_pred CCCCceEEEEECCCCceeE---EEecCCceeEEEEecC---ceEEEecCeEEEEEcCC
Q 015650 152 QYPLNKVMIWDDHQSRCIG---ELSFRSEVRSVKLRRD---RIIVVLEQKIFVYNFAD 203 (403)
Q Consensus 152 ~~~~~~i~iwd~~~~~~~~---~~~~~~~i~~~~~~~~---~~~~~~d~~i~i~d~~~ 203 (403)
..+.++|+++..... .......|.++.-+++ ..++.+...|...++..
T Consensus 224 ----~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 224 ----SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred ----CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 578999998876533 2225678899988887 34444788888888876
No 465
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=85.79 E-value=23 Score=30.89 Aligned_cols=206 Identities=10% Similarity=0.061 Sum_probs=107.6
Q ss_pred CeEEEEEcCCCCEEEE--Ec----C----C---cEEEEEcCCCeeEEEEeccc---CcceeEEEEeeeC------CeEEE
Q 015650 87 TLLHISFNQDHGCFAA--GT----D----H---GFRIYNCDPFREIFRRDFER---GGGIGVVEMLFRC------NILAL 144 (403)
Q Consensus 87 ~i~~i~~s~d~~~l~~--~~----~----~---~i~iw~~~~~~~~~~~~~~~---~~~~~v~~~~~~~------~~~~~ 144 (403)
.|..+...+++++-+. |. . . .|.+||+.+.+.+....+.. .....+..+.... ++.+.
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 4677888888876554 32 1 1 38899999988765555541 1234566666654 15666
Q ss_pred eeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEEecCeEEEEEcCCceeeeEeeccCCCceeEEEee
Q 015650 145 VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ 224 (403)
Q Consensus 145 ~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (403)
++-... +-|.++|+.+++..+.+.+. +...|+...+..+|...-|. .+ +..++.++
T Consensus 82 ItD~~~-----~glIV~dl~~~~s~Rv~~~~-----~~~~p~~~~~~i~g~~~~~~--dg------------~~gial~~ 137 (287)
T PF03022_consen 82 ITDSGG-----PGLIVYDLATGKSWRVLHNS-----FSPDPDAGPFTIGGESFQWP--DG------------IFGIALSP 137 (287)
T ss_dssp EEETTT-----CEEEEEETTTTEEEEEETCG-----CTTS-SSEEEEETTEEEEET--TS------------EEEEEE-T
T ss_pred EeCCCc-----CcEEEEEccCCcEEEEecCC-----cceeccccceeccCceEecC--CC------------ccccccCC
Confidence 666655 78999999999876666531 11122222222333322221 22 33344433
Q ss_pred ---CCCeEEEEeeCCccCeEEEEEccC-----C----------ceeEEeecCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015650 225 ---GVGSLVLVCPGLQKGQVRVEHYAS-----K----------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF 286 (403)
Q Consensus 225 ---~~~~~~~~~~g~~d~~i~v~d~~~-----~----------~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iw 286 (403)
+++.+|+..- ... ++|.+.+ . .++.+-........++++++|.++++--..+. |..|
T Consensus 138 ~~~d~r~LYf~~l--ss~--~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~a-I~~w 212 (287)
T PF03022_consen 138 ISPDGRWLYFHPL--SSR--KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNA-IGCW 212 (287)
T ss_dssp TSTTS-EEEEEET--T-S--EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTE-EEEE
T ss_pred CCCCccEEEEEeC--CCC--cEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCe-EEEE
Confidence 4444444331 111 2333322 1 11222222246678899999998888888888 9999
Q ss_pred EcCCC---cEEEEEecCCC-cccEEEEEeCC--CCCEEEEE
Q 015650 287 NTLDG---TLLQEVRRGAD-RAEIYSLAFSS--NAQWLAVS 321 (403)
Q Consensus 287 d~~~~---~~~~~~~~~~~-~~~v~~l~~s~--d~~~l~s~ 321 (403)
+.... +....+..... -..+.++.+.+ +|.+.+..
T Consensus 213 ~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 213 DPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred eCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 97651 12222322112 35778899988 76655544
No 466
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=85.78 E-value=45 Score=34.23 Aligned_cols=171 Identities=14% Similarity=0.180 Sum_probs=100.4
Q ss_pred eEEEEECCCCceeEEEecCC-----ceeEEEEecCce--EEE--------------ecCeEEEEEcC-CceeeeEeeccC
Q 015650 157 KVMIWDDHQSRCIGELSFRS-----EVRSVKLRRDRI--IVV--------------LEQKIFVYNFA-DLKLLHQIETIA 214 (403)
Q Consensus 157 ~i~iwd~~~~~~~~~~~~~~-----~i~~~~~~~~~~--~~~--------------~d~~i~i~d~~-~~~~~~~~~~~~ 214 (403)
.|+++|..+++.+..+.+.. .+..+.|+.... +++ ++|.++.|++- .++.+.-+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 58899988888877776322 355566654322 222 14557888754 355444433223
Q ss_pred CCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeE---EeecCCceEEEEEcCCCCEEEEEeCCCcEEE--EEEcC
Q 015650 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF---IMAHDSRIACFALTQDGQLLATSSTKGTLVR--IFNTL 289 (403)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~---~~~~~~~i~~~~~sp~g~~l~s~~~dg~~i~--iwd~~ 289 (403)
-+....++.|..+. +++. -...+++||+..+++.. ++.-...|+.+++ .+.+++.|..... +. .|+-.
T Consensus 934 ~~~~v~Ai~~f~~~-~Lag---vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeS-V~~~~y~~~ 1006 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGR-VLAG---VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQES-VHFVRYRRE 1006 (1205)
T ss_pred CCccceEEeccCCE-EEEe---cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccce-EEEEEEecC
Confidence 33345677777764 4443 34789999998865432 2223556777777 5667777765554 54 45533
Q ss_pred CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 290 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
.+.+..+....-...|+++.+- |...+|.+..=|.+.+-.+....
T Consensus 1007 -~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1007 -DNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred -CCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCCcc
Confidence 3444455543344567777664 55677777676777666665433
No 467
>PHA02790 Kelch-like protein; Provisional
Probab=85.75 E-value=33 Score=32.60 Aligned_cols=181 Identities=15% Similarity=0.038 Sum_probs=80.7
Q ss_pred CCCEEEEEcC-C-----cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCcee
Q 015650 96 DHGCFAAGTD-H-----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169 (403)
Q Consensus 96 d~~~l~~~~~-~-----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~ 169 (403)
++.++++|+. + .+..||..+.+......+. ....-.+.....+.+++++|... ...+..||..+++-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~--~~r~~~~~v~~~~~iYviGG~~~----~~sve~ydp~~n~W~ 344 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMN--SPRLYASGVPANNKLYVVGGLPN----PTSVERWFHGDAAWV 344 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCC--chhhcceEEEECCEEEEECCcCC----CCceEEEECCCCeEE
Confidence 4566677762 2 2566776655443323332 11111222333444555554321 146788887665432
Q ss_pred EEEecCCce--eEEEEecCceEEEe------cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeE
Q 015650 170 GELSFRSEV--RSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV 241 (403)
Q Consensus 170 ~~~~~~~~i--~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 241 (403)
..-.-..+. .+++.. ++.+.+. ...+..||.++.+-...-. -..+....+...-++.++++ | |.+
T Consensus 345 ~~~~l~~~r~~~~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~-m~~~r~~~~~~~~~~~IYv~--G---G~~ 417 (480)
T PHA02790 345 NMPSLLKPRCNPAVASI-NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS-TYYPHYKSCALVFGRRLFLV--G---RNA 417 (480)
T ss_pred ECCCCCCCCcccEEEEE-CCEEEEecCcCCCCccEEEEeCCCCEEEeCCC-CCCccccceEEEECCEEEEE--C---Cce
Confidence 211111111 122322 4444332 2357788876643221100 01111111222223444443 3 457
Q ss_pred EEEEccCCceeEEeec---CCceEEEEEcCCCCEEEEEeCC-----CcEEEEEEcCCCc
Q 015650 242 RVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGT 292 (403)
Q Consensus 242 ~v~d~~~~~~~~~~~~---~~~i~~~~~sp~g~~l~s~~~d-----g~~i~iwd~~~~~ 292 (403)
.+||.++..-..+..- ......+.+ +|++.+.|+.+ .. |..||..+.+
T Consensus 418 e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~-ve~Yd~~~~~ 473 (480)
T PHA02790 418 EFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDT-IEVYNNRTYS 473 (480)
T ss_pred EEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccce-EEEEECCCCe
Confidence 7888877554433221 122222333 77777888754 23 6677765544
No 468
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.37 E-value=11 Score=29.94 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=24.4
Q ss_pred CceEEEEEcCCC------CEEEEEeCCCcEEEEEEcC
Q 015650 259 SRIACFALTQDG------QLLATSSTKGTLVRIFNTL 289 (403)
Q Consensus 259 ~~i~~~~~sp~g------~~l~s~~~dg~~i~iwd~~ 289 (403)
..+.+++|||-| -+|++.+.++. |.||.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~-l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGR-LSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCe-EEEEecC
Confidence 378999999944 47888888998 9999755
No 469
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=85.37 E-value=39 Score=33.10 Aligned_cols=235 Identities=16% Similarity=0.139 Sum_probs=116.6
Q ss_pred EEEcCCCCEEEEEcCCc-EEEEEcCC-CeeEEEEecccCcceeEEEEeeeC----CeEEEeeCCCCCCCCCceEEEEECC
Q 015650 91 ISFNQDHGCFAAGTDHG-FRIYNCDP-FREIFRRDFERGGGIGVVEMLFRC----NILALVGGGPDPQYPLNKVMIWDDH 164 (403)
Q Consensus 91 i~~s~d~~~l~~~~~~~-i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~s~~~d~~~~~~~i~iwd~~ 164 (403)
..++|+...+-.|=.+. |.-|-+.+ .+.++...+. ....|.++.... ...++++-... +.-++-.+.
T Consensus 33 ~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~--pt~iV~~~dV~~~~~~~~~~~~glt~r-----Kk~~ll~i~ 105 (670)
T PF10395_consen 33 DDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPIS--PTTIVECCDVLEKSDGKKLYCVGLTER-----KKFKLLLIE 105 (670)
T ss_pred cccCCCCceEEEEeccchhhheecCCCcceeEeeccC--cCceEEEEEeEecCCCcEEEEEEEeeC-----CeeEEEEEE
Confidence 35677777776664443 55555432 2333333343 444455554321 23444443333 333333222
Q ss_pred CC-----------ceeE--EEecCCceeEEEEecCceEEE---ecCeEEEEEcCCce--eeeEeecc-CCCceeEEEee-
Q 015650 165 QS-----------RCIG--ELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK--LLHQIETI-ANPKGLCAVSQ- 224 (403)
Q Consensus 165 ~~-----------~~~~--~~~~~~~i~~~~~~~~~~~~~---~d~~i~i~d~~~~~--~~~~~~~~-~~~~~~~~~~~- 224 (403)
.+ +... .++....|.++.|..++..++ .+|.|.+||...+. .+..+... ...+..-+|-.
T Consensus 106 ~~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~ 185 (670)
T PF10395_consen 106 RKVGSTEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVND 185 (670)
T ss_pred ccCccccccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcc
Confidence 22 2222 334678899999997766555 59999999993322 11122111 11111001111
Q ss_pred ----C-CCeEEEEee-CCccCeEEEEEc--cCCceeEEe---ecCCceE--EEEEcCCCCEEEEEeCCCcEEEEEEcCCC
Q 015650 225 ----G-VGSLVLVCP-GLQKGQVRVEHY--ASKRTKFIM---AHDSRIA--CFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (403)
Q Consensus 225 ----~-~~~~~~~~~-g~~d~~i~v~d~--~~~~~~~~~---~~~~~i~--~~~~sp~g~~l~s~~~dg~~i~iwd~~~~ 291 (403)
+ .+.+++++. .+..-..+++.+ ....+..+. .+..... .+++. +|.+..- .++. |.+|++...
T Consensus 186 ~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~-i~~ysip~f 261 (670)
T PF10395_consen 186 FELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKT-ISSYSIPNF 261 (670)
T ss_pred cccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCE-EEEEEcCCc
Confidence 2 233444442 123345777777 333333332 2222222 23333 5654433 5667 999999998
Q ss_pred cEEEEEecCC--Cc--ccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCC
Q 015650 292 TLLQEVRRGA--DR--AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (403)
Q Consensus 292 ~~~~~~~~~~--~~--~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~ 338 (403)
+...++.... .. ..+.++.--...+.|++ .++.|++.|+.-....
T Consensus 262 ~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs--~~nkIyLld~~~~siL 310 (670)
T PF10395_consen 262 QIQKTISLPSIIDKESDDLVSLKPPSPNRVLLS--VNNKIYLLDLKFESIL 310 (670)
T ss_pred eEEEEEEechhhccccccceEeecCCCCeEEEE--cCCEEEEEeehhhhhh
Confidence 8877776431 11 13444433223445554 3678999999765543
No 470
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=85.36 E-value=38 Score=32.94 Aligned_cols=202 Identities=13% Similarity=0.036 Sum_probs=103.4
Q ss_pred CeEEEEEcCCCCEEEEEcCC------cEEEEEcCCCeeEEEEecccCcceeEEEEeeeCCeEEEeeCCCCCCCCCceEEE
Q 015650 87 TLLHISFNQDHGCFAAGTDH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (403)
Q Consensus 87 ~i~~i~~s~d~~~l~~~~~~------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~i 160 (403)
.+-.++.+||.+++|.+-|. ++++-|+.+++... ..+ ......++|.+++..+.-...+..-.+.+|..
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~-d~i----~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~ 204 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELP-DEI----TNTSGSFAWAADGKTLFYTRLDENHRPDKVWR 204 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccc-hhh----cccccceEEecCCCeEEEEEEcCCCCcceEEE
Confidence 46678889999999887532 18888888776542 112 12345566766554444333332211233333
Q ss_pred EECCC--CceeEEEec--CCceeEEEEecCceEEE--e----cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEE
Q 015650 161 WDDHQ--SRCIGELSF--RSEVRSVKLRRDRIIVV--L----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (403)
Q Consensus 161 wd~~~--~~~~~~~~~--~~~i~~~~~~~~~~~~~--~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (403)
-.+.+ ..-...++- ..-...+.-+....+++ . .+.+++.+.........+-.....-....+...++.++
T Consensus 205 h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~ 284 (682)
T COG1770 205 HRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFY 284 (682)
T ss_pred EecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEE
Confidence 33433 222222332 22223344444555555 1 34688888776433222111111111222333355555
Q ss_pred EEeeCCccC-eEEEEEccC----CceeEEeecCCceEEEEEcCCCCEEEEEeCCCc--EEEEEEcCCCcEEE
Q 015650 231 LVCPGLQKG-QVRVEHYAS----KRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLDGTLLQ 295 (403)
Q Consensus 231 ~~~~g~~d~-~i~v~d~~~----~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg~--~i~iwd~~~~~~~~ 295 (403)
+.+ . .+| ..+|+.... ..-+.+..|...+.--.|+--.++|+....++. .|++++.++++...
T Consensus 285 i~s-N-~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~ 354 (682)
T COG1770 285 ILS-N-ADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERG 354 (682)
T ss_pred EEe-c-CCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCceee
Confidence 554 2 333 555554433 333556678777766666666677776665442 27888887766543
No 471
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=85.17 E-value=25 Score=30.70 Aligned_cols=136 Identities=11% Similarity=0.161 Sum_probs=80.0
Q ss_pred eEEEEEcCCceeeeEeeccCC------CceeEEEeeCCC----eEEEEeeCCccCeEEEEEccCCceeEEee--------
Q 015650 195 KIFVYNFADLKLLHQIETIAN------PKGLCAVSQGVG----SLVLVCPGLQKGQVRVEHYASKRTKFIMA-------- 256 (403)
Q Consensus 195 ~i~i~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~g~~d~~i~v~d~~~~~~~~~~~-------- 256 (403)
+|.+||+.+++.++.+.-... ....+.+..... ..+.++ -...+-|.|+|+.+++...+..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYIt-D~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYIT-DSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEE-ETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEe-CCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 688999999988877754322 233456655332 333333 2344689999998855433221
Q ss_pred ------------cCCceEEEEEcC---CCCEEEEEeCCCcEEEEEEcCCC--------------cEEEEEecCCCcccEE
Q 015650 257 ------------HDSRIACFALTQ---DGQLLATSSTKGTLVRIFNTLDG--------------TLLQEVRRGADRAEIY 307 (403)
Q Consensus 257 ------------~~~~i~~~~~sp---~g~~l~s~~~dg~~i~iwd~~~~--------------~~~~~~~~~~~~~~v~ 307 (403)
....+..++.+| +|+.|+.....+. ++|.+.+. +.++.+-. ......
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~--~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~--k~~~s~ 189 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR--KLYRVPTSVLRDPSLSDAQALASQVQDLGD--KGSQSD 189 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S--EEEEEEHHHHCSTT--HHH-HHHT-EEEEE-----SEC
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC--cEEEEEHHHhhCccccccccccccceeccc--cCCCCc
Confidence 122366777766 7778887776664 56654321 11222211 113556
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEEeecC
Q 015650 308 SLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (403)
Q Consensus 308 ~l~~s~d~~~l~s~~~dg~v~iwd~~~~ 335 (403)
.++.+++|.++++--..+.|..|+..+.
T Consensus 190 g~~~D~~G~ly~~~~~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 190 GMAIDPNGNLYFTDVEQNAIGCWDPDGP 217 (287)
T ss_dssp EEEEETTTEEEEEECCCTEEEEEETTTS
T ss_pred eEEECCCCcEEEecCCCCeEEEEeCCCC
Confidence 7888999988888889999999998863
No 472
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=84.99 E-value=29 Score=31.22 Aligned_cols=158 Identities=12% Similarity=0.111 Sum_probs=82.3
Q ss_pred CceeEEEEecCc-eEEEecCeEEEEEcCC-ceeeeEeeccCCC-------------ceeEEEeeCC------CeEEEEee
Q 015650 176 SEVRSVKLRRDR-IIVVLEQKIFVYNFAD-LKLLHQIETIANP-------------KGLCAVSQGV------GSLVLVCP 234 (403)
Q Consensus 176 ~~i~~~~~~~~~-~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~-------------~~~~~~~~~~------~~~~~~~~ 234 (403)
+....++|...+ .+++.|...-+|.+.- ++....+...... -..+-|.-.. +.++.+..
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~ 194 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALE 194 (376)
T ss_pred CCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeec
Confidence 556678888876 6666787766666542 2211111111100 0112221111 12233335
Q ss_pred CCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCCC-cEEEEEEcCCCcE--EEEEecCCCcccEEEEEe
Q 015650 235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG-TLVRIFNTLDGTL--LQEVRRGADRAEIYSLAF 311 (403)
Q Consensus 235 g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~dg-~~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~ 311 (403)
|..+|.+.-||..++..+.+...-.-.+.++.|||+.+++.+-.-- ...+.| ++..+. ...+..+ -.+.--.|..
T Consensus 195 g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw-i~g~k~gt~EvFa~~-LPG~PDNIR~ 272 (376)
T KOG1520|consen 195 GDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW-IKGPKAGTSEVFAEG-LPGYPDNIRR 272 (376)
T ss_pred CCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeE-ecCCccCchhhHhhc-CCCCCcceeE
Confidence 6677888889988888777665555568899999999887654322 314566 332111 0111110 1233345667
Q ss_pred CCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 312 SSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 312 s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
+++|.+.+.-...... +|++-...
T Consensus 273 ~~~G~fWVal~~~~~~-~~~~~~~~ 296 (376)
T KOG1520|consen 273 DSTGHFWVALHSKRST-LWRLLMKY 296 (376)
T ss_pred CCCCCEEEEEecccch-HHHhhhcC
Confidence 7888765544322222 66665443
No 473
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=84.90 E-value=26 Score=30.76 Aligned_cols=72 Identities=19% Similarity=0.367 Sum_probs=52.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcc----cEEEEEeCCCCCEEEEEeCCCcEEEEEee
Q 015650 260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA----EIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (403)
Q Consensus 260 ~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~----~v~~l~~s~d~~~l~s~~~dg~v~iwd~~ 333 (403)
-|++|...++|.+|++.-.-.. |.+.|-++|+.+-.+.+.. .+ .-...+|-.|-+++-.+..++.|.|||=.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~-i~~I~~~tG~I~W~lgG~~-~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTST-IYKIDPSTGKIIWRLGGKR-NSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred EeeeeeecCCccEEEEecccCE-EEEEECCCCcEEEEeCCCC-CCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 3777888899999998888778 9999999999988886531 11 11224555566666566778889998873
No 474
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.60 E-value=7.1 Score=31.06 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=26.2
Q ss_pred cEEEEEeCCCCC------EEEEEeCCCcEEEEEeecC
Q 015650 305 EIYSLAFSSNAQ------WLAVSSDKGTVHVFNLKVN 335 (403)
Q Consensus 305 ~v~~l~~s~d~~------~l~s~~~dg~v~iwd~~~~ 335 (403)
.|.+++|||-|- +|++.+.+|.|.||.-...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 788999999543 7889999999999987754
No 475
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.59 E-value=0.15 Score=46.21 Aligned_cols=140 Identities=11% Similarity=0.100 Sum_probs=87.3
Q ss_pred EEEEecCceEEE---ecCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEee
Q 015650 180 SVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA 256 (403)
Q Consensus 180 ~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~ 256 (403)
...|.+.+.-++ .+..+..||- .++.+.... ..+..-.++|..+++.+.+++ ...+.+.+||+.+....++..
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlA--ek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLA--EKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhh--hcCCCeeechhhhhhHHHHhc
Confidence 345566554444 4667788883 344333332 122233456666666655554 577899999998865554432
Q ss_pred c-CCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcE
Q 015650 257 H-DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV 327 (403)
Q Consensus 257 ~-~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v 327 (403)
. ...-.-+.|++.+..++.+...|. +.|++..+.+.+. ..+.|...++++++.+.+..+ .++.|..+
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn-~viynhgtsR~ii--v~Gkh~RRgtq~av~lEd~vi-l~dcd~~L 182 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGN-IVIYNHGTSRRII--VMGKHQRRGTQIAVTLEDYVI-LCDCDNTL 182 (615)
T ss_pred cCcchHHHHhhccCCccccccccccc-eEEEeccchhhhh--hhcccccceeEEEecccceee-ecCcHHHH
Confidence 2 111222689999999999989999 9999876655443 333377889999999876544 44444443
No 476
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=84.59 E-value=6.9 Score=27.06 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=31.7
Q ss_pred CCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeC
Q 015650 235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST 278 (403)
Q Consensus 235 g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~ 278 (403)
+..+|.+..||..+++...+...-.-.+.+++++|+.+|+.+-.
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence 34568899999999988777665666799999999997766543
No 477
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=84.56 E-value=52 Score=33.85 Aligned_cols=137 Identities=14% Similarity=0.085 Sum_probs=76.5
Q ss_pred EEEEEcCCceeeeEeeccCC----CceeEEEeeCCCeEEEEeeCC----------ccCeEEEEEccC-CceeEEeecCCc
Q 015650 196 IFVYNFADLKLLHQIETIAN----PKGLCAVSQGVGSLVLVCPGL----------QKGQVRVEHYAS-KRTKFIMAHDSR 260 (403)
Q Consensus 196 i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~----------~d~~i~v~d~~~-~~~~~~~~~~~~ 260 (403)
|+++|...++.+..+....+ .+..+.|+......++++.+. .+|.++.|++-. +....+ .|...
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lel-lh~T~ 933 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLEL-LHKTE 933 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeee-eeccC
Confidence 67777666655544432222 233445555544423332221 134466665433 221111 23222
Q ss_pred eE--EEEEcCCCCEEEEEeCCCcEEEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCC
Q 015650 261 IA--CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (403)
Q Consensus 261 i~--~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~ 337 (403)
+. -.++.|-..++++|-. .. +++||+...++++..+...-...|..+++ .+..+++|.....|.++..+...+
T Consensus 934 ~~~~v~Ai~~f~~~~LagvG-~~-l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n 1008 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLAGVG-RF-LRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDN 1008 (1205)
T ss_pred CCccceEEeccCCEEEEecc-cE-EEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCC
Confidence 22 2355665556665543 45 99999988887776665434567888887 567888888777777777766553
No 478
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.56 E-value=47 Score=33.31 Aligned_cols=76 Identities=17% Similarity=0.135 Sum_probs=51.0
Q ss_pred CCeEEEEEcCCCCEEEEEcCCcEEEEEcCC----------C-eeEEEEec-------ccCcceeEEEEeeeCCe---EEE
Q 015650 86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDP----------F-REIFRRDF-------ERGGGIGVVEMLFRCNI---LAL 144 (403)
Q Consensus 86 ~~i~~i~~s~d~~~l~~~~~~~i~iw~~~~----------~-~~~~~~~~-------~~~~~~~v~~~~~~~~~---~~~ 144 (403)
-.|..|.++|+|++||..+..+|.|-.+.. + .....+++ ..+....|..+.|+|.+ ..+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 378999999999999999988877666521 1 11111222 12455688899998753 344
Q ss_pred eeCCCCCCCCCceEEEEECCCC
Q 015650 145 VGGGPDPQYPLNKVMIWDDHQS 166 (403)
Q Consensus 145 ~s~~~d~~~~~~~i~iwd~~~~ 166 (403)
+.-..| +.+++||+...
T Consensus 165 ~vLtsd-----n~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSD-----NTLRLYDISDP 181 (717)
T ss_pred EEEecC-----CEEEEEecCCC
Confidence 444444 89999999754
No 479
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=84.48 E-value=45 Score=33.07 Aligned_cols=144 Identities=10% Similarity=0.103 Sum_probs=81.6
Q ss_pred CCEEEEEcCCcEEEEEcCCCeeEEE----Eecc-----------------cCcceeEEEEeeeCCeEEEeeCCCCCCCCC
Q 015650 97 HGCFAAGTDHGFRIYNCDPFREIFR----RDFE-----------------RGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (403)
Q Consensus 97 ~~~l~~~~~~~i~iw~~~~~~~~~~----~~~~-----------------~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (403)
..+|+++..+.|.||+.+....... ..+. ..|......+..-.+...|+.+.+|
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~Dd----- 123 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDD----- 123 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecC-----
Confidence 7788888888899999864433210 0000 1122222233333355566667777
Q ss_pred ceEEEEECCC-------C-------------ceeEEEecCCceeEEEEe--cCceEEE-ecC----eEEEEEcCCceeee
Q 015650 156 NKVMIWDDHQ-------S-------------RCIGELSFRSEVRSVKLR--RDRIIVV-LEQ----KIFVYNFADLKLLH 208 (403)
Q Consensus 156 ~~i~iwd~~~-------~-------------~~~~~~~~~~~i~~~~~~--~~~~~~~-~d~----~i~i~d~~~~~~~~ 208 (403)
|.|.+|.+++ . ++...+.....+++++++ ...++++ +++ +|..+.+...+...
T Consensus 124 G~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~ 203 (717)
T PF08728_consen 124 GDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH 203 (717)
T ss_pred CeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc
Confidence 9999997521 0 012223356688999998 7778877 443 34445553222111
Q ss_pred E-eeccCCCceeEEEeeCC---Ce-EEEEeeCCccCeEEEEEc
Q 015650 209 Q-IETIANPKGLCAVSQGV---GS-LVLVCPGLQKGQVRVEHY 246 (403)
Q Consensus 209 ~-~~~~~~~~~~~~~~~~~---~~-~~~~~~g~~d~~i~v~d~ 246 (403)
. -..+.+.|..++|-++. .+ ..+++ .+-.|.+.+|++
T Consensus 204 ~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a-~dI~G~v~~~~I 245 (717)
T PF08728_consen 204 VPSHQHSHNIPNVSFLDDDLDPNGHVKVVA-TDISGEVWTFKI 245 (717)
T ss_pred ccccccccCCCeeEeecCCCCCccceEEEE-EeccCcEEEEEE
Confidence 1 11356677888887755 22 23333 357788888877
No 480
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=84.30 E-value=44 Score=32.78 Aligned_cols=159 Identities=14% Similarity=0.130 Sum_probs=84.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEEecccCcceeEEEEee--------eCCeEEEeeC--CCCCC
Q 015650 84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF--------RCNILALVGG--GPDPQ 152 (403)
Q Consensus 84 ~~~~i~~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~s~--~~d~~ 152 (403)
-.+.|-.|.|.++++.+++...+| |.+|+...........+...+...+.--.| ..+..++++. +..
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k-- 205 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSK-- 205 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCc--
Confidence 366899999999998888887666 999998322221111222112221111122 1234444444 222
Q ss_pred CCCceEEEEEC-CCCceeEEEe----cCCceeEEEEe-cCceEEE-ecCeEEEEEcCCceeeeEeecc--CCC--ceeEE
Q 015650 153 YPLNKVMIWDD-HQSRCIGELS----FRSEVRSVKLR-RDRIIVV-LEQKIFVYNFADLKLLHQIETI--ANP--KGLCA 221 (403)
Q Consensus 153 ~~~~~i~iwd~-~~~~~~~~~~----~~~~i~~~~~~-~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~--~~~--~~~~~ 221 (403)
-..+++.+ .....+.++. +........|. .+|.+.. .+++|.+|++...+..+++... -.. -..+.
T Consensus 206 ---~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vS 282 (670)
T PF10395_consen 206 ---LSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISLPSIIDKESDDLVS 282 (670)
T ss_pred ---EEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEechhhccccccceE
Confidence 45677776 1222233332 22222222222 2555544 7889999999887776666432 111 23445
Q ss_pred EeeCCCeEEEEeeCCccCeEEEEEccCCc
Q 015650 222 VSQGVGSLVLVCPGLQKGQVRVEHYASKR 250 (403)
Q Consensus 222 ~~~~~~~~~~~~~g~~d~~i~v~d~~~~~ 250 (403)
+.+-....++.+ .+..|++.|+.-..
T Consensus 283 l~~~s~nRvLLs---~~nkIyLld~~~~s 308 (670)
T PF10395_consen 283 LKPPSPNRVLLS---VNNKIYLLDLKFES 308 (670)
T ss_pred eecCCCCeEEEE---cCCEEEEEeehhhh
Confidence 544333444554 56899999987633
No 481
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=84.11 E-value=24 Score=29.83 Aligned_cols=137 Identities=9% Similarity=0.039 Sum_probs=75.2
Q ss_pred eEEEEECCCCceeEEEe--cCCceeEEEEecCceEEEe----c--CeEEEEEcCC--ceee-eEe---eccCCCceeEEE
Q 015650 157 KVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL----E--QKIFVYNFAD--LKLL-HQI---ETIANPKGLCAV 222 (403)
Q Consensus 157 ~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~----d--~~i~i~d~~~--~~~~-~~~---~~~~~~~~~~~~ 222 (403)
.-.+||+.+++.. .+. ...-..+-.+.+||+++.. + ..+++++..+ ..+- .+. -....+......
T Consensus 47 ~s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 47 HSVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 3568888877542 233 2223334467789998883 2 3588888644 0111 000 012334445556
Q ss_pred eeCCCeEEEEeeCCccCeEEEEEccC--CceeEE---ee-----cCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCc
Q 015650 223 SQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFI---MA-----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292 (403)
Q Consensus 223 ~~~~~~~~~~~~g~~d~~i~v~d~~~--~~~~~~---~~-----~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~~~ 292 (403)
-+|++ +++.+|.......+|.-.. .....+ .. ....---+...|+|++++.+..+. .|||..+.+
T Consensus 126 L~DG~--vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s---~i~d~~~n~ 200 (243)
T PF07250_consen 126 LPDGR--VLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS---IIYDYKTNT 200 (243)
T ss_pred CCCCC--EEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc---EEEeCCCCe
Confidence 66776 4444566655666666432 111111 10 011112456689999998887654 588988887
Q ss_pred EEEEEec
Q 015650 293 LLQEVRR 299 (403)
Q Consensus 293 ~~~~~~~ 299 (403)
.++.+..
T Consensus 201 v~~~lP~ 207 (243)
T PF07250_consen 201 VVRTLPD 207 (243)
T ss_pred EEeeCCC
Confidence 7776654
No 482
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.64 E-value=27 Score=29.88 Aligned_cols=194 Identities=11% Similarity=0.001 Sum_probs=114.1
Q ss_pred eEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEecCceEEEecC--eEEEEEcCCceee
Q 015650 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVLEQ--KIFVYNFADLKLL 207 (403)
Q Consensus 131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~ 207 (403)
.-..++..+|+...+++... +.|--.|..+|+....-- ....-..|..-||+..-+.|. -|.-.|-++.+.
T Consensus 63 ap~dvapapdG~VWft~qg~-----gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~ev- 136 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGT-----GAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEV- 136 (353)
T ss_pred CccccccCCCCceEEecCcc-----ccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccce-
Confidence 33456667777666666655 777777888887554322 455667788889887666544 455566555432
Q ss_pred eEee----ccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEccCCceeEEee-cCCceEEEEEcCCCCEEEEEeCCCcE
Q 015650 208 HQIE----TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSSTKGTL 282 (403)
Q Consensus 208 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~-~~~~i~~~~~sp~g~~l~s~~~dg~~ 282 (403)
..|. ..........|.+.+.-.+. + ..|.---.|.....+..+.. ....-+.|+..|||..-++.-.+..
T Consensus 137 t~f~lp~~~a~~nlet~vfD~~G~lWFt---~-q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagna- 211 (353)
T COG4257 137 TRFPLPLEHADANLETAVFDPWGNLWFT---G-QIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNA- 211 (353)
T ss_pred EEeecccccCCCcccceeeCCCccEEEe---e-ccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccc-
Confidence 2221 12233445566666542222 2 12221122333333444432 3445678899999998887666776
Q ss_pred EEEEEcCCCcEEEEEecCC-CcccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCC
Q 015650 283 VRIFNTLDGTLLQEVRRGA-DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (403)
Q Consensus 283 i~iwd~~~~~~~~~~~~~~-~~~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~ 336 (403)
|-..|..++... .+.... .......+--+|.|+..++....+.++.||-.+..
T Consensus 212 iaridp~~~~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 212 IARIDPFAGHAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred eEEcccccCCcc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence 777777766332 232211 12345566677889988888888888888876554
No 483
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=83.30 E-value=55 Score=33.18 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=52.1
Q ss_pred ccEEEEEeCCCCCEEEEEeCCCcEEEEEeecCCCCCCCC---CCCCCCCCCcccccccccccccceeeeeeeeEEEEEeC
Q 015650 304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE---PRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE 380 (403)
Q Consensus 304 ~~v~~l~~s~d~~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (403)
..|.++....-+.+++..-.||+|.++|-.+.+.+.... ............+..| -. .
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~f---------------p~----~ 320 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHF---------------PC----I 320 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCcccccccccccccc---------------cc----C
Confidence 567888888888899999999999999999987643330 0000111222222222 00 1
Q ss_pred CCceEEEeccCCCEEEEEccCCC
Q 015650 381 GSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 381 ~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
.....++|||.+.-++.-..||.
T Consensus 321 ~~~~~vafSPt~c~~v~~~~~~~ 343 (753)
T PF11635_consen 321 QPPLHVAFSPTMCSLVQIDEDGK 343 (753)
T ss_pred CCCceEEECcccceEEEEecCCC
Confidence 14556899999988888887763
No 484
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=82.80 E-value=40 Score=31.20 Aligned_cols=225 Identities=15% Similarity=0.178 Sum_probs=0.0
Q ss_pred eCCeEEEeeCCCCCCCCCceEEEEECCCCc-----eeEEEecCCceeEEEEec-----CceEEE--ecCeEEEEEc----
Q 015650 138 RCNILALVGGGPDPQYPLNKVMIWDDHQSR-----CIGELSFRSEVRSVKLRR-----DRIIVV--LEQKIFVYNF---- 201 (403)
Q Consensus 138 ~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~-----~~~~~~~~~~i~~~~~~~-----~~~~~~--~d~~i~i~d~---- 201 (403)
..+...++.|+.. |.++||+...+. .+.+.+...+|..+..-+ +...++ .-..+.+|.+
T Consensus 34 ~~~~d~IivGS~~-----G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~ 108 (418)
T PF14727_consen 34 PSGSDKIIVGSYS-----GILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVD 108 (418)
T ss_pred CCCccEEEEeccc-----cEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecC
Q ss_pred --------CCceeeeEeeccCCCceeEEEeeCCCe-EEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCE
Q 015650 202 --------ADLKLLHQIETIANPKGLCAVSQGVGS-LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQL 272 (403)
Q Consensus 202 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~ 272 (403)
-..+.+.+..-.......+.-...+-. .-++|.-+.||.+.+|+-+.-....+...---...+.|.+.-..
T Consensus 109 g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDs 188 (418)
T PF14727_consen 109 GTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDS 188 (418)
T ss_pred CCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCE
Q ss_pred EEEEeCCCcEEEEEEc----------------------------------------------------------------
Q 015650 273 LATSSTKGTLVRIFNT---------------------------------------------------------------- 288 (403)
Q Consensus 273 l~s~~~dg~~i~iwd~---------------------------------------------------------------- 288 (403)
|++++.+.. |.-|..
T Consensus 189 fvt~sss~~-l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l 267 (418)
T PF14727_consen 189 FVTASSSWT-LECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCL 267 (418)
T ss_pred EEEecCcee-EEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEE
Q ss_pred -CCCcEEEEEecCCCcccEEEEEe--CCCCC---EEEEEeCCCcEEEEEeecCCCCCCCCCCCCCCCCCccccccccccc
Q 015650 289 -LDGTLLQEVRRGADRAEIYSLAF--SSNAQ---WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGV 362 (403)
Q Consensus 289 -~~~~~~~~~~~~~~~~~v~~l~~--s~d~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (403)
.+|+.....+-............ ..++. .++.++.++++.||.=.+-.
T Consensus 268 ~~~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~-------------------------- 321 (418)
T PF14727_consen 268 KDNGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLV-------------------------- 321 (418)
T ss_pred cCCCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEE--------------------------
Q ss_pred ccceeeeeeeeEEEEEeCCCceEEEeccCCCEEEEEccCCC
Q 015650 363 LPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGR 403 (403)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~fs~d~~~l~~~~~dG~ 403 (403)
|+.. +....-.+....|..-...|++-+.+|+
T Consensus 322 --------WsA~-l~~~PVal~v~~~~~~~G~IV~Ls~~G~ 353 (418)
T PF14727_consen 322 --------WSAQ-LPHVPVALSVANFNGLKGLIVSLSDEGQ 353 (418)
T ss_pred --------EecC-CCCCCEEEEecccCCCCceEEEEcCCCc
No 485
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=81.98 E-value=14 Score=25.51 Aligned_cols=40 Identities=8% Similarity=0.050 Sum_probs=27.1
Q ss_pred cCeEEEEEcCCceeeeEeeccCCCceeEEEeeCCCeEEEEe
Q 015650 193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (403)
Q Consensus 193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (403)
+|.+..||..+++....+.+.. .-..++++++++.++++=
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L~-fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGLY-FPNGVALSPDESFVLVAE 75 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEES-SEEEEEE-TTSSEEEEEE
T ss_pred CcCEEEEECCCCeEEEehhCCC-ccCeEEEcCCCCEEEEEe
Confidence 5788899999887654444433 347799999998776654
No 486
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=81.73 E-value=41 Score=30.58 Aligned_cols=186 Identities=13% Similarity=0.159 Sum_probs=100.2
Q ss_pred CCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEec----CceE--E-E-ec-----CeEEEEEcC--C
Q 015650 139 CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR----DRII--V-V-LE-----QKIFVYNFA--D 203 (403)
Q Consensus 139 ~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~----~~~~--~-~-~d-----~~i~i~d~~--~ 203 (403)
|....+++.... +-+.+||+. |+.++.+. .+.++.+.... .+.. + + ++ ++|++|.+. +
T Consensus 66 p~kSlIigTdK~-----~GL~VYdL~-Gk~lq~~~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~ 138 (381)
T PF02333_consen 66 PAKSLIIGTDKK-----GGLYVYDLD-GKELQSLP-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT 138 (381)
T ss_dssp GGG-EEEEEETT-----TEEEEEETT-S-EEEEE--SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT
T ss_pred cccceEEEEeCC-----CCEEEEcCC-CcEEEeec-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC
Confidence 344455555555 789999964 66666664 23444444322 2322 2 2 32 468899775 3
Q ss_pred ceeeeEeec-------cCCCceeEEEeeC--CCeEEEEeeCCccCeEEEEEccC---Cc-----eeEEeecCCceEEEEE
Q 015650 204 LKLLHQIET-------IANPKGLCAVSQG--VGSLVLVCPGLQKGQVRVEHYAS---KR-----TKFIMAHDSRIACFAL 266 (403)
Q Consensus 204 ~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~g~~d~~i~v~d~~~---~~-----~~~~~~~~~~i~~~~~ 266 (403)
+. +..+.. ....++.+|+..+ ...+++.. ...+|.+..|.+.. +. ++.+. -...+..|..
T Consensus 139 g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v-~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-~~sQ~EGCVV 215 (381)
T PF02333_consen 139 GE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFV-NGKDGRVEQYELTDDGDGKVSATLVREFK-VGSQPEGCVV 215 (381)
T ss_dssp TE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEE-EETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEE
T ss_pred Cc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEE-ecCCceEEEEEEEeCCCCcEeeEEEEEec-CCCcceEEEE
Confidence 33 333321 1123455666432 23334333 34789888887753 22 23333 3457888999
Q ss_pred cCCCCEEEEEeCCCcEEEEEEcCC-----CcEEEEEecCCCcccEEEEEeC--CCCC-EEEEEe-CCCcEEEEEeecC
Q 015650 267 TQDGQLLATSSTKGTLVRIFNTLD-----GTLLQEVRRGADRAEIYSLAFS--SNAQ-WLAVSS-DKGTVHVFNLKVN 335 (403)
Q Consensus 267 sp~g~~l~s~~~dg~~i~iwd~~~-----~~~~~~~~~~~~~~~v~~l~~s--~d~~-~l~s~~-~dg~v~iwd~~~~ 335 (403)
.....+|+.+-++.. |+-|+.+- ++.+....+......|-.|++- .+++ ||++.+ .+++..||+.+..
T Consensus 216 DDe~g~LYvgEE~~G-IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 216 DDETGRLYVGEEDVG-IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp ETTTTEEEEEETTTE-EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred ecccCCEEEecCccE-EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 888889999999988 88888752 2223222222233567777663 3443 555544 7778999998754
No 487
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=80.84 E-value=52 Score=31.23 Aligned_cols=190 Identities=12% Similarity=0.062 Sum_probs=85.3
Q ss_pred CCeEEEeeC---CCCCCCCCceEEEEECCCCceeEEEec-CCceeEEEEecCceEEE-ecCeEEEEEcCCceeeeEeecc
Q 015650 139 CNILALVGG---GPDPQYPLNKVMIWDDHQSRCIGELSF-RSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETI 213 (403)
Q Consensus 139 ~~~~~~~s~---~~d~~~~~~~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~ 213 (403)
.++++++.. ... ....+.| ..|.....+.. ......+...++|.+++ ....++.+|+ .|+.+......
T Consensus 113 ~~gl~~~~~~~~~~~-----~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~~~~~e~D~-~G~v~~~~~l~ 185 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSS-----SYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSGNRLYEIDL-LGKVIWEYDLP 185 (477)
T ss_dssp TT-EEEEEETT--BE-----EEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEBTEEEEE-T-T--EEEEEE--
T ss_pred CCcEEEEeCCCCCCC-----ceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecCCceEEEcC-CCCEEEeeecC
Confidence 466777776 222 6677778 56666655552 22222267788999888 6788888887 46665555433
Q ss_pred CCC---ceeEEEeeCCCeEEEEee------C--------------CccCeEEEEEccCCc--eeE----------E---e
Q 015650 214 ANP---KGLCAVSQGVGSLVLVCP------G--------------LQKGQVRVEHYASKR--TKF----------I---M 255 (403)
Q Consensus 214 ~~~---~~~~~~~~~~~~~~~~~~------g--------------~~d~~i~v~d~~~~~--~~~----------~---~ 255 (403)
... -..+..-++|+-++++.. + .....+..||+..-. ... . .
T Consensus 186 ~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~ 265 (477)
T PF05935_consen 186 GGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSG 265 (477)
T ss_dssp TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SS
T ss_pred CcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCC
Confidence 221 234555566655444431 0 111233344443311 010 0 0
Q ss_pred ecC--CceEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCcEEEEEecCCCc-----ccEEE---------------EEeC
Q 015650 256 AHD--SRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADR-----AEIYS---------------LAFS 312 (403)
Q Consensus 256 ~~~--~~i~~~~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~-----~~v~~---------------l~~s 312 (403)
... -.+.++.+.+....|+.++. -.. |...|.++++..-.+-.+..- ..+.. ..|
T Consensus 266 ~~~DW~H~Nsi~yd~~dd~iivSsR~~s~-V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~- 343 (477)
T PF05935_consen 266 GGRDWLHINSIDYDPSDDSIIVSSRHQSA-VIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDW- 343 (477)
T ss_dssp TTSBS--EEEEEEETTTTEEEEEETTT-E-EEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----
T ss_pred CCCCccccCccEEeCCCCeEEEEcCcceE-EEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcc-
Confidence 001 13788999994444444455 446 888888888876665432100 00110 111
Q ss_pred CCCCEEEEEeCCC---cEEEEEeecCCC
Q 015650 313 SNAQWLAVSSDKG---TVHVFNLKVNSG 337 (403)
Q Consensus 313 ~d~~~l~s~~~dg---~v~iwd~~~~~~ 337 (403)
.-|++-+.--.+| .|.+||=.....
T Consensus 344 ~~gQH~~~~~~~g~~~~l~vFDNg~~r~ 371 (477)
T PF05935_consen 344 FWGQHTAHLIPDGPQGNLLVFDNGNGRG 371 (477)
T ss_dssp -SS-EEEEE-TTS---SEEEEE--TTGG
T ss_pred cccccceEEcCCCCeEEEEEEECCCCCC
Confidence 1255556666677 888888766553
No 488
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=80.40 E-value=40 Score=29.61 Aligned_cols=85 Identities=16% Similarity=0.179 Sum_probs=55.7
Q ss_pred CCeEEEEeeCCccCeEEEEEccCCceeEEeecCCceEEEEEcCCCCEEEEEeCC--------------------CcEEEE
Q 015650 226 VGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK--------------------GTLVRI 285 (403)
Q Consensus 226 ~~~~~~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~i~~~~~sp~g~~l~s~~~d--------------------g~~i~i 285 (403)
+..+++.- +..|.+..+|.+++....+..-.+....+.|. |+++++|-.. .. |.|
T Consensus 212 dgrLwvld--sgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CG-v~v 286 (335)
T TIGR03032 212 QGKLWLLN--SGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCG-VAV 286 (335)
T ss_pred CCeEEEEE--CCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhccc-EEE
Confidence 34555553 34688888898877776665556677888886 8887765431 23 777
Q ss_pred EEcCCCcEEEEEecCCCcccEEEEEeCCCC
Q 015650 286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNA 315 (403)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~v~~l~~s~d~ 315 (403)
-|+++|..+..++-...-..+.+++.-|.-
T Consensus 287 idl~tG~vv~~l~feg~v~EifdV~vLPg~ 316 (335)
T TIGR03032 287 IDLNSGDVVHWLRFEGVIEEIYDVAVLPGV 316 (335)
T ss_pred EECCCCCEEEEEEeCCceeEEEEEEEecCC
Confidence 788888877766643233456666666653
No 489
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.57 E-value=44 Score=35.20 Aligned_cols=139 Identities=14% Similarity=0.206 Sum_probs=78.9
Q ss_pred CeEEEeeCCCCCCCCCceEEEEECCCCceeEEEe-cCCceeEEEEe--------cC---ceEEEecCeEEEEEcCCce--
Q 015650 140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLR--------RD---RIIVVLEQKIFVYNFADLK-- 205 (403)
Q Consensus 140 ~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~--------~~---~~~~~~d~~i~i~d~~~~~-- 205 (403)
=+.+.++-+ +.+.+|+.+++.....+. ....|..|..- |. ..++++--.|.++-+.-.+
T Consensus 90 I~RaWiTiD-------n~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~ 162 (1311)
T KOG1900|consen 90 IGRAWITID-------NNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFT 162 (1311)
T ss_pred hcceEEEeC-------CeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecccc
Confidence 344555555 789999999977777666 55556655442 11 1222245556665443211
Q ss_pred --e---eeEeeccCCCceeEEEeeCCCeEEEEeeCCccCeEEEEEcc--C------Cce-----------------eEEe
Q 015650 206 --L---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--S------KRT-----------------KFIM 255 (403)
Q Consensus 206 --~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~v~d~~--~------~~~-----------------~~~~ 255 (403)
. ...+.....++...++....++.++.+ | .|| .+|.+- . +++ ..+.
T Consensus 163 ~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~-G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~ 238 (1311)
T KOG1900|consen 163 GELSIFNTSFKISVDGVSVNCITYTENGRIFFA-G-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP 238 (1311)
T ss_pred CcccccccceeeecCCceEEEEEeccCCcEEEe-e-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC
Confidence 1 111222233444444433333333432 4 666 444432 1 111 1123
Q ss_pred -ecCCceEEEEEcCCCCEEEEEeCCCcEEEEEEcCC
Q 015650 256 -AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (403)
Q Consensus 256 -~~~~~i~~~~~sp~g~~l~s~~~dg~~i~iwd~~~ 290 (403)
.+..+|..+.......+|++-+..|+ |.+||+..
T Consensus 239 ~~~~dpI~qi~ID~SR~IlY~lsek~~-v~~Y~i~~ 273 (1311)
T KOG1900|consen 239 GSSKDPIRQITIDNSRNILYVLSEKGT-VSAYDIGG 273 (1311)
T ss_pred CCCCCcceeeEeccccceeeeeccCce-EEEEEccC
Confidence 56779999999988889999999999 99999965
No 490
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=79.03 E-value=21 Score=36.05 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=39.4
Q ss_pred CCcEEEEEEcCCCcEEEE-EecCCCcccEEEEEeCCCCCEEEE-EeCCC-----cEEEEEeecCC
Q 015650 279 KGTLVRIFNTLDGTLLQE-VRRGADRAEIYSLAFSSNAQWLAV-SSDKG-----TVHVFNLKVNS 336 (403)
Q Consensus 279 dg~~i~iwd~~~~~~~~~-~~~~~~~~~v~~l~~s~d~~~l~s-~~~dg-----~v~iwd~~~~~ 336 (403)
.+. |.+-|......... ++ +...|.+-.|||||+.|+- .+.++ .|++-++.+..
T Consensus 328 ~~~-L~~~D~dG~n~~~ve~~---~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~ 388 (912)
T TIGR02171 328 TGN-LAYIDYTKGASRAVEIE---DTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASG 388 (912)
T ss_pred CCe-EEEEecCCCCceEEEec---CCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccC
Confidence 346 88888765555433 44 5678999999999999987 44444 48888988765
No 491
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=78.74 E-value=16 Score=36.93 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=54.9
Q ss_pred CeEEEEEccCCceeEE-eecCCceEEEEEcCCCCEEEE-EeCCC---c-EEEEEEcCC-CcEEEEEecCCCcccEEEEEe
Q 015650 239 GQVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLAT-SSTKG---T-LVRIFNTLD-GTLLQEVRRGADRAEIYSLAF 311 (403)
Q Consensus 239 ~~i~v~d~~~~~~~~~-~~~~~~i~~~~~sp~g~~l~s-~~~dg---~-~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~ 311 (403)
+.|.+-|......+.+ ..+..+|.+-+|||||+.|+. .+.++ . .|++-|+.+ +.-+.++.. ....|..-..
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~v--e~aaiprwrv 406 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPV--ENAAIPRWRV 406 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeec--ccccccceEe
Confidence 5888889888777766 667888999999999999987 44444 2 278888865 333334443 3456666666
Q ss_pred CCCCCEEE
Q 015650 312 SSNAQWLA 319 (403)
Q Consensus 312 s~d~~~l~ 319 (403)
.++|...+
T Consensus 407 ~e~gdt~i 414 (912)
T TIGR02171 407 LENGDTVI 414 (912)
T ss_pred cCCCCeEE
Confidence 67776443
No 492
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=78.50 E-value=12 Score=25.67 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=25.4
Q ss_pred ccEEEEEeCCCCCEEEEEe-CCCcEEEEEeec
Q 015650 304 AEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKV 334 (403)
Q Consensus 304 ~~v~~l~~s~d~~~l~s~~-~dg~v~iwd~~~ 334 (403)
..-+.|.++|++++|.+++ ..+.|++|+...
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 4567899999999987776 678899998764
No 493
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=77.35 E-value=53 Score=32.43 Aligned_cols=68 Identities=4% Similarity=0.019 Sum_probs=49.2
Q ss_pred cceeEEEEeeeCCeEEEeeCCCCCCCCCceEEEEECCCCceeEEEecCCceeEEEEecCceEEE-ecCeEEEEE
Q 015650 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYN 200 (403)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~d~~i~i~d 200 (403)
....++++.-+|.+..++.+..| |.|.+|+....+..+......+-..+.|...|.+.+ +|..+.-|.
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d-----~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQD-----GSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTATSDRRALAWK 81 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecC-----CcEEEEeecccchhhhhhhcCCccceeeeccceEEEeccchhheee
Confidence 34566778888999999999999 999999987655433333344555677777787777 577777776
No 494
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=76.80 E-value=50 Score=31.71 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=16.7
Q ss_pred CcccEEEEEeCCCCCEEEEE
Q 015650 302 DRAEIYSLAFSSNAQWLAVS 321 (403)
Q Consensus 302 ~~~~v~~l~~s~d~~~l~s~ 321 (403)
....++.++|+||++.|.+.
T Consensus 500 ~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 500 NGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred CCcccccceECCCCCEEEEE
Confidence 55789999999999987753
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=76.80 E-value=20 Score=31.11 Aligned_cols=52 Identities=13% Similarity=0.238 Sum_probs=37.0
Q ss_pred EEEEEcCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe------CCCcEEEEEeecCC
Q 015650 283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS------DKGTVHVFNLKVNS 336 (403)
Q Consensus 283 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~------~dg~v~iwd~~~~~ 336 (403)
|++||..+.+-...-.. -.+.|++|.|..+.++++.|. ....+..||+++.+
T Consensus 18 lC~yd~~~~qW~~~g~~--i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 18 LCLYDTDNSQWSSPGNG--ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred EEEEECCCCEeecCCCC--ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 99999877665433322 457899999987777777664 34568888888765
No 496
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=76.44 E-value=68 Score=30.11 Aligned_cols=106 Identities=13% Similarity=0.071 Sum_probs=55.7
Q ss_pred CCceeEEEeeCCCeEEEEeeCCc-cCeEEEEEccCCceeE------E-e-ecCCceEEEEEcCCC------CEEEEEe--
Q 015650 215 NPKGLCAVSQGVGSLVLVCPGLQ-KGQVRVEHYASKRTKF------I-M-AHDSRIACFALTQDG------QLLATSS-- 277 (403)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~g~~-d~~i~v~d~~~~~~~~------~-~-~~~~~i~~~~~sp~g------~~l~s~~-- 277 (403)
..-..+++.|+++ ++++ .. .|.|++++..+..... + . ........|+|+|+- .+|+...
T Consensus 30 ~~Pw~maflPDG~--llVt--ER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~ 105 (454)
T TIGR03606 30 NKPWALLWGPDNQ--LWVT--ERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTY 105 (454)
T ss_pred CCceEEEEcCCCe--EEEE--EecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEec
Confidence 3346788888874 3443 23 4889988765532211 1 1 135668899999874 2444332
Q ss_pred --------CCCcEEEEEEcCCC--c---EEEEEecC--CCcccEEEEEeCCCCCEEEEEeCCC
Q 015650 278 --------TKGTLVRIFNTLDG--T---LLQEVRRG--ADRAEIYSLAFSSNAQWLAVSSDKG 325 (403)
Q Consensus 278 --------~dg~~i~iwd~~~~--~---~~~~~~~~--~~~~~v~~l~~s~d~~~l~s~~~dg 325 (403)
.... |.-|.+... . ....+... .....-..|+|.|||.+.++.++.+
T Consensus 106 ~~~~~~~~~~~~-I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 106 KNGDKELPNHTK-IVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred cCCCCCccCCcE-EEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
Confidence 1223 444544311 1 11112210 0012245788999998777666543
No 497
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=75.81 E-value=12 Score=31.53 Aligned_cols=83 Identities=14% Similarity=0.095 Sum_probs=50.5
Q ss_pred EEEEEccCCceeEEeec-CCceEEEEEcCCCCEEEEEeCC---CcEEEEEEcCC----CcEEEEEecCCCcccEEEEEeC
Q 015650 241 VRVEHYASKRTKFIMAH-DSRIACFALTQDGQLLATSSTK---GTLVRIFNTLD----GTLLQEVRRGADRAEIYSLAFS 312 (403)
Q Consensus 241 i~v~d~~~~~~~~~~~~-~~~i~~~~~sp~g~~l~s~~~d---g~~i~iwd~~~----~~~~~~~~~~~~~~~v~~l~~s 312 (403)
-.+||+.+...+.+... ...+.+-.+-+||++|.+|+.. .. +++++... .........-.....--.+..-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~-ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKA-IRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccc-eEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 45899998877766533 3334445678999999998763 24 78887543 1111110000122344455566
Q ss_pred CCCCEEEEEeCC
Q 015650 313 SNAQWLAVSSDK 324 (403)
Q Consensus 313 ~d~~~l~s~~~d 324 (403)
+||+.|+.|+.+
T Consensus 127 ~DG~vlIvGG~~ 138 (243)
T PF07250_consen 127 PDGRVLIVGGSN 138 (243)
T ss_pred CCCCEEEEeCcC
Confidence 899999999876
No 498
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=74.43 E-value=8.9 Score=20.24 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=19.2
Q ss_pred EEEEEeCCCcEEEEEEcCCCcEEEE
Q 015650 272 LLATSSTKGTLVRIFNTLDGTLLQE 296 (403)
Q Consensus 272 ~l~s~~~dg~~i~iwd~~~~~~~~~ 296 (403)
.++.++.++. +..+|.++|+.+-.
T Consensus 8 ~v~~~~~~g~-l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGT-LYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCE-EEEEEcccCcEEEE
Confidence 5777888888 99999988887644
No 499
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=73.63 E-value=10 Score=19.40 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=15.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEE
Q 015650 261 IACFALTQDGQLLATSSTKGTLVRIF 286 (403)
Q Consensus 261 i~~~~~sp~g~~l~s~~~dg~~i~iw 286 (403)
...++++++|+++++-+.... |++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~r-V~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHR-VQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTE-EEEE
T ss_pred CcEEEEeCCCCEEEEECCCCE-EEEC
Confidence 356677777766666555555 5553
No 500
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=73.56 E-value=36 Score=25.60 Aligned_cols=111 Identities=13% Similarity=0.104 Sum_probs=59.4
Q ss_pred EEEEcCCCCEEEEEcCCc-EEEEEcCCCeeE------EEEecccCcceeEEEEee---e--CCeEEEeeCCCCCCCCCce
Q 015650 90 HISFNQDHGCFAAGTDHG-FRIYNCDPFREI------FRRDFERGGGIGVVEMLF---R--CNILALVGGGPDPQYPLNK 157 (403)
Q Consensus 90 ~i~~s~d~~~l~~~~~~~-i~iw~~~~~~~~------~~~~~~~~~~~~v~~~~~---~--~~~~~~~s~~~d~~~~~~~ 157 (403)
.-.|......|++++..+ |.|++....... ....|. -+..|.+++- . .+...|+-++. ..
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~------t~ 74 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQ------TS 74 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEecc------ce
Confidence 446766667788887544 889876432211 112232 3344555442 2 23334444443 58
Q ss_pred EEEEECCCCceeEEEecCCceeEEEEec----CceEEE--ecCeEEEEEcCCceeee
Q 015650 158 VMIWDDHQSRCIGELSFRSEVRSVKLRR----DRIIVV--LEQKIFVYNFADLKLLH 208 (403)
Q Consensus 158 i~iwd~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~--~d~~i~i~d~~~~~~~~ 208 (403)
|..||+....-+..-+....|.++.+-. +..+++ .+..|.-||..-.+...
T Consensus 75 llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 75 LLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred EEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 9999998876655444567777777642 223333 23455555544334333
Done!