Query 015651
Match_columns 403
No_of_seqs 234 out of 879
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:18:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 1E-115 3E-120 887.1 36.0 397 2-403 6-421 (421)
2 KOG0799 Branching enzyme [Carb 100.0 3.5E-65 7.6E-70 524.2 20.7 331 52-401 98-439 (439)
3 PF02485 Branch: Core-2/I-Bran 100.0 9.5E-54 2.1E-58 407.8 16.7 237 58-317 1-244 (244)
4 TIGR03469 HonB hopene-associat 93.6 4.8 0.0001 41.1 17.5 114 52-173 36-154 (384)
5 TIGR03472 HpnI hopanoid biosyn 90.5 6.9 0.00015 39.7 14.2 106 54-175 39-149 (373)
6 PRK11204 N-glycosyltransferase 88.3 6.8 0.00015 40.1 12.4 105 53-174 51-159 (420)
7 TIGR03111 glyc2_xrt_Gpos1 puta 88.0 15 0.00033 38.2 14.9 107 53-175 46-157 (439)
8 cd02525 Succinoglycan_BP_ExoA 85.2 12 0.00026 34.3 11.2 99 57-174 1-103 (249)
9 cd06439 CESA_like_1 CESA_like_ 80.9 24 0.00052 32.7 11.5 106 50-176 23-133 (251)
10 PRK14583 hmsR N-glycosyltransf 80.8 20 0.00042 37.4 11.8 94 54-164 73-169 (444)
11 PRK10063 putative glycosyl tra 80.1 34 0.00074 32.7 12.4 101 56-174 1-106 (248)
12 cd02520 Glucosylceramide_synth 78.5 32 0.00069 30.9 11.1 104 56-175 1-109 (196)
13 PF07521 RMMBL: RNA-metabolisi 78.2 1.3 2.8E-05 31.1 1.5 29 62-92 14-42 (43)
14 PRK14716 bacteriophage N4 adso 78.1 32 0.00068 36.9 12.4 101 54-165 64-173 (504)
15 PF08660 Alg14: Oligosaccharid 76.9 22 0.00048 32.4 9.5 125 61-188 3-131 (170)
16 cd04184 GT2_RfbC_Mx_like Myxoc 75.8 27 0.00059 31.0 9.9 94 56-164 1-97 (202)
17 PTZ00260 dolichyl-phosphate be 75.7 58 0.0013 32.6 13.1 112 52-175 66-188 (333)
18 PF13641 Glyco_tranf_2_3: Glyc 75.2 13 0.00028 34.0 7.7 113 56-185 1-120 (228)
19 PLN02726 dolichyl-phosphate be 74.4 44 0.00096 31.2 11.3 108 52-175 5-116 (243)
20 cd06437 CESA_CaSu_A2 Cellulose 71.8 29 0.00063 31.9 9.3 103 56-172 1-107 (232)
21 COG1216 Predicted glycosyltran 70.9 31 0.00067 33.8 9.7 90 55-161 2-94 (305)
22 cd02511 Beta4Glucosyltransfera 70.1 47 0.001 30.9 10.3 96 57-175 1-97 (229)
23 PRK07132 DNA polymerase III su 69.3 36 0.00079 33.9 9.7 95 54-159 15-128 (299)
24 cd06421 CESA_CelA_like CESA_Ce 67.2 66 0.0014 29.1 10.5 103 56-175 1-107 (234)
25 cd04192 GT_2_like_e Subfamily 66.9 53 0.0012 29.5 9.8 99 61-175 2-105 (229)
26 cd04186 GT_2_like_c Subfamily 66.9 67 0.0014 27.0 9.9 92 61-174 2-96 (166)
27 PF00535 Glycos_transf_2: Glyc 66.7 29 0.00062 29.0 7.5 100 60-176 2-105 (169)
28 PRK05454 glucosyltransferase M 65.9 1.7E+02 0.0036 32.8 14.9 125 50-186 118-256 (691)
29 PRK10073 putative glycosyl tra 65.0 74 0.0016 31.8 11.1 93 55-164 5-99 (328)
30 cd04179 DPM_DPG-synthase_like 62.5 72 0.0016 27.7 9.5 107 61-185 2-113 (185)
31 cd06427 CESA_like_2 CESA_like_ 61.6 66 0.0014 29.9 9.5 94 56-164 1-98 (241)
32 cd06434 GT2_HAS Hyaluronan syn 60.6 62 0.0014 29.4 9.1 98 58-174 2-99 (235)
33 PRK05917 DNA polymerase III su 59.9 60 0.0013 32.3 9.2 98 54-160 16-134 (290)
34 TIGR01556 rhamnosyltran L-rham 58.2 81 0.0018 30.1 9.7 85 65-164 3-87 (281)
35 PRK07414 cob(I)yrinic acid a,c 57.6 1.5E+02 0.0033 27.4 10.8 106 69-184 36-152 (178)
36 cd04187 DPM1_like_bac Bacteria 57.6 1.1E+02 0.0025 26.6 9.9 96 61-175 2-103 (181)
37 TIGR03030 CelA cellulose synth 57.5 1.7E+02 0.0038 32.6 13.3 117 53-185 128-263 (713)
38 cd02510 pp-GalNAc-T pp-GalNAc- 56.6 80 0.0017 30.5 9.5 99 60-174 2-105 (299)
39 PRK05986 cob(I)alamin adenolsy 54.9 1.8E+02 0.004 27.1 11.2 106 69-184 37-152 (191)
40 cd06420 GT2_Chondriotin_Pol_N 54.3 1.3E+02 0.0028 26.0 9.7 98 61-175 2-102 (182)
41 PRK06871 DNA polymerase III su 53.5 79 0.0017 31.9 9.0 98 55-160 22-146 (325)
42 PRK11234 nfrB bacteriophage N4 51.5 99 0.0021 34.8 10.1 104 52-166 59-171 (727)
43 cd06913 beta3GnTL1_like Beta 1 50.4 1.3E+02 0.0029 27.1 9.5 95 61-165 2-99 (219)
44 PRK07276 DNA polymerase III su 49.0 1.3E+02 0.0028 30.0 9.5 25 55-79 22-46 (290)
45 PRK06581 DNA polymerase III su 48.7 1.6E+02 0.0034 29.0 9.7 98 54-160 12-128 (263)
46 PF02572 CobA_CobO_BtuR: ATP:c 47.4 92 0.002 28.6 7.7 106 69-184 18-133 (172)
47 cd02526 GT2_RfbF_like RfbF is 47.2 1.7E+02 0.0038 26.5 9.8 96 61-174 2-97 (237)
48 PRK07993 DNA polymerase III su 45.6 1.5E+02 0.0033 29.9 9.7 98 54-160 21-147 (334)
49 PF07747 MTH865: MTH865-like f 45.5 10 0.00022 30.1 0.9 19 157-175 11-29 (75)
50 PRK05818 DNA polymerase III su 45.0 99 0.0022 30.4 7.9 36 125-160 91-127 (261)
51 cd04196 GT_2_like_d Subfamily 41.4 2.5E+02 0.0054 24.7 11.1 99 60-175 2-102 (214)
52 cd04185 GT_2_like_b Subfamily 41.1 2.5E+02 0.0055 24.7 10.2 90 61-164 2-93 (202)
53 cd06442 DPM1_like DPM1_like re 41.1 2E+02 0.0044 25.7 9.1 97 61-175 2-101 (224)
54 COG3618 Predicted metal-depend 40.9 1.3E+02 0.0027 30.0 7.9 92 68-169 145-244 (279)
55 cd02522 GT_2_like_a GT_2_like_ 39.2 2.2E+02 0.0048 25.4 9.0 91 59-174 2-94 (221)
56 cd04195 GT2_AmsE_like GT2_AmsE 38.9 2.7E+02 0.0058 24.4 10.4 90 60-165 2-95 (201)
57 TIGR02803 ExbD_1 TonB system t 37.6 2.5E+02 0.0054 23.7 10.8 49 69-121 69-119 (122)
58 PRK08058 DNA polymerase III su 37.4 2.5E+02 0.0054 28.1 9.7 97 54-159 25-148 (329)
59 COG2109 BtuR ATP:corrinoid ade 36.5 3.7E+02 0.0081 25.3 11.9 106 69-184 43-159 (198)
60 COG1215 Glycosyltransferases, 36.4 4.6E+02 0.01 26.4 12.2 96 55-165 53-152 (439)
61 cd06433 GT_2_WfgS_like WfgS an 35.9 2.9E+02 0.0062 23.8 9.8 87 60-165 2-90 (202)
62 KOG3339 Predicted glycosyltran 35.5 2.7E+02 0.0059 26.2 8.7 112 58-175 40-158 (211)
63 COG0848 ExbD Biopolymer transp 35.2 3.1E+02 0.0068 24.1 11.8 51 68-122 80-132 (137)
64 PRK05564 DNA polymerase III su 34.2 3.6E+02 0.0078 26.5 10.2 98 54-159 23-131 (313)
65 COG4746 Uncharacterized protei 33.7 22 0.00048 28.2 1.2 18 158-175 17-34 (80)
66 PF12273 RCR: Chitin synthesis 32.0 31 0.00067 29.8 1.9 18 5-22 1-18 (130)
67 cd06423 CESA_like CESA_like is 31.9 2.9E+02 0.0062 22.6 8.9 95 61-173 2-99 (180)
68 cd02514 GT13_GLCNAC-TI GT13_GL 28.5 4.5E+02 0.0098 26.7 9.8 98 58-166 2-113 (334)
69 cd04188 DPG_synthase DPG_synth 27.8 2.5E+02 0.0054 25.2 7.4 97 61-175 2-105 (211)
70 PRK15489 nfrB bacteriophage N4 27.3 3.5E+02 0.0076 30.4 9.5 116 53-185 68-195 (703)
71 cd00761 Glyco_tranf_GTA_type G 26.9 3.2E+02 0.007 21.7 9.7 89 61-165 2-92 (156)
72 cd00006 PTS_IIA_man PTS_IIA, P 26.3 3.5E+02 0.0076 22.7 7.5 92 60-165 3-96 (122)
73 PRK05707 DNA polymerase III su 25.5 5.7E+02 0.012 25.7 10.0 99 54-160 19-145 (328)
74 COG1954 GlpP Glycerol-3-phosph 24.2 1.2E+02 0.0026 28.1 4.3 40 53-95 21-60 (181)
75 PRK11498 bcsA cellulose syntha 24.0 1E+03 0.022 27.6 12.5 113 53-185 257-374 (852)
76 TIGR03675 arCOG00543 arCOG0054 23.0 1.2E+02 0.0025 33.6 4.8 47 56-103 562-611 (630)
77 cd02537 GT8_Glycogenin Glycoge 22.1 6.7E+02 0.014 23.6 9.4 108 58-172 1-111 (240)
78 PRK14952 DNA polymerase III su 21.9 6.4E+02 0.014 27.7 10.1 98 54-159 32-156 (584)
79 PF11051 Mannosyl_trans3: Mann 21.5 3.6E+02 0.0079 26.2 7.5 96 60-172 4-112 (271)
80 PRK08769 DNA polymerase III su 21.3 5.6E+02 0.012 25.7 9.0 28 133-160 124-152 (319)
81 PRK10714 undecaprenyl phosphat 20.9 8.3E+02 0.018 24.2 11.9 107 54-177 4-115 (325)
82 TIGR00824 EIIA-man PTS system, 20.4 5.2E+02 0.011 21.7 8.4 93 59-165 3-97 (116)
83 PRK08309 short chain dehydroge 20.2 6.5E+02 0.014 22.7 9.9 82 68-160 32-114 (177)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=1.3e-115 Score=887.05 Aligned_cols=397 Identities=54% Similarity=0.976 Sum_probs=364.6
Q ss_pred CccchhHHHHHHHHHHHHHHHhcCCc-ccCCCC--------------CCCCccccccccccC---CCCCCCCCeEEEEEE
Q 015651 2 GIKVFVTLFMLTSVFLCFVYISTPAK-RFTSLY--------------KFNPIIMTSNKITLK---SNNSSYPVTFAYLLS 63 (403)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~~~~~~~~~~---~~~~~~~~kiAYLI~ 63 (403)
+++||++|++++++++++|+++++++ +.++.+ +.+.+.++++++.++ .+.++.||||||||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~AYLI~ 85 (421)
T PLN03183 6 VEKRWVFPLVITSLVCVFLLATSFNMGLVSSLRTINSIFSIFPLSRTNQTRLEFAESKVNQSPHPPPVQDKLPRFAYLVS 85 (421)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhcccCCCccccccccccccccccccccccccccccCCCCCCCCCCCCCCeEEEEEE
Confidence 57999999999999998876643321 111110 112234566655531 234556999999999
Q ss_pred ecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHHHHHHHHH
Q 015651 64 ASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIA 143 (403)
Q Consensus 64 ~hk~d~~~l~rLl~aLyhp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~ 143 (403)
||+||.+|++|||++||||+|+||||+|+||+..++.++++.++.+|++.+++||+|+++++.|+|||+|||+|||+||+
T Consensus 86 ~h~~d~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WGG~S~V~AtL~~m~ 165 (421)
T PLN03183 86 GSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYRGPTMVANTLHACA 165 (421)
T ss_pred ecCCcHHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccCChHHHHHHHHHHH
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCC-CcEEEeccCCceeccchhhHHHHHccCCCCcceEecccCCCccccccccccccCCCccccCCcceeeeeecC
Q 015651 144 MLLRCCK-WDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQR 222 (403)
Q Consensus 144 ~lL~~~~-wdyfi~LSgsDyPL~t~~~i~~~fs~~~~~~nFIe~~~~~gwk~~~R~~~~i~dpgly~~~k~~~~~~~~kR 222 (403)
.||+.+. |||||||||+||||+||+||++.|+++|+|+|||++++..+|++.+|+++++++||+|..+++.++|.+++|
T Consensus 166 ~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pgl~~~~ks~~~~~~~~R 245 (421)
T PLN03183 166 ILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWVTPRR 245 (421)
T ss_pred HHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCceeecccchhhhhhhhc
Confidence 9999877 999999999999999999988877788999999999988999999999999999999988888889999999
Q ss_pred CCCCCceeeeccceeeecHhHHHHcccccCCChHHHHHHhcCCCCCCCchhhhHhhcCCCCCcccccCceeeEecCCCCC
Q 015651 223 SIPSAFKLYTGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDLHYITWDTPPK 302 (403)
Q Consensus 223 ~~P~~~~l~~GS~W~~LsR~fvey~i~~~d~lpr~ll~yf~~~~~pdE~fFqTvl~Ns~~f~~t~vn~nLRyi~W~~~~~ 302 (403)
.+|.++++|+||+|++|||+||+||+++|||+|++++|||+++++|||+|||||+||+++|+++++|+|||||+|+++++
T Consensus 246 ~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t~vn~nLRyI~W~~~~~ 325 (421)
T PLN03183 246 SLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVNHDLHYISWDNPPK 325 (421)
T ss_pred cCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhcccccccccCCceeEEecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCCHHHHHHHhcCCCcEEeccCCChHHHHHHHHHHhcccCCCcccCccccCCCCCCCccccccCCCCcccCCchhH
Q 015651 303 QHPRSLGLKDFRRMVLSSRPFARKFKQNSPVLDKIDRDLLKRHRRRYTNGGWCSESERDQACSGFQSENYGVLRPGPGSR 382 (403)
Q Consensus 303 ~~P~~L~~~D~~~l~~S~a~FARKF~~d~~lld~Id~~ll~r~~~~~~~g~w~~~~~~~~~~c~~~g~~~~~~~pg~~~~ 382 (403)
+||++|+.+||++|++|+++|||||+.|++|||+||+++++|..++++|||||.| .||||++||+ ++|||||||+
T Consensus 326 ~~P~~l~~~D~~~l~~S~~lFARKFd~d~~vl~~Id~~ll~r~~~~~~~g~wc~~----~~~c~~~~~~-~~~~p~~~~~ 400 (421)
T PLN03183 326 QHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELLGRKNGSFTPGGWCSG----KPKCSRVGDP-AKIKPGPGAQ 400 (421)
T ss_pred CCCcccCHHHHHHHHhCCCccccCCCCChHHHHHHHHHHhCCCCCCccCCcccCC----CCcccccCCc-CccCCCcHHH
Confidence 9999999999999999999999999999999999999999999999999999987 5699999999 9999999999
Q ss_pred HHHHHHHHhhcccCCcCCCCC
Q 015651 383 RLKNLLTKLISARNFTKRQCR 403 (403)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~c~ 403 (403)
||++||++||++++||++||+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~c~ 421 (421)
T PLN03183 401 RLKGLVSRLVLEAKLGQNQCK 421 (421)
T ss_pred HHHHHHHHHhchhccccccCC
Confidence 999999999999999999996
No 2
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-65 Score=524.23 Aligned_cols=331 Identities=44% Similarity=0.736 Sum_probs=303.6
Q ss_pred CCCCC-eEEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeec
Q 015651 52 SSYPV-TFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYR 130 (403)
Q Consensus 52 ~~~~~-kiAYLI~~hk~d~~~l~rLl~aLyhp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wg 130 (403)
.+.++ .+||+.++|+ |.++++|+|+|+|||+|.||||||++|+++++..++. ++.|++||+|++++..|+||
T Consensus 98 ~~~~~~~~a~~~~v~k-d~~~verll~aiYhPqN~ycihvD~~s~~~fk~~~~~------L~~cf~NV~v~~k~~~v~~~ 170 (439)
T KOG0799|consen 98 KELKPFPAAFLRVVYK-DYEQVERLLQAIYHPQNVYCIHVDAKSPPEFRVAMQQ------LASCFPNVIVLPKRESVTYG 170 (439)
T ss_pred ccccccceEEEEeecc-cHHHHHHHHHHHhCCcCcceEEECCCCCHHHHHHHHH------HHhcCCceEEeccccceecC
Confidence 34455 4455555555 9999999999999999999999999999999977764 56799999999999999999
Q ss_pred CccHHHHHHHHHHHHHhCCC-CcEEEeccCCceeccchhhHHHHHccCCCCcceEecccCCCccccccccccccCCCccc
Q 015651 131 GPTMLATTLHAIAMLLRCCK-WDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYS 209 (403)
Q Consensus 131 g~S~V~AtL~~~~~lL~~~~-wdyfi~LSgsDyPL~t~~~i~~~fs~~~~~~nFIe~~~~~gwk~~~R~~~~i~dpgly~ 209 (403)
|+|+++|+|+||+.|++.+. |||||||||+|||||||+||+++|+.+ +|.|||++++..+|++.++.++...+++ |+
T Consensus 171 G~s~l~a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L-~g~N~i~~~~~~~~~~~~~~k~~~~~~~-~~ 248 (439)
T KOG0799|consen 171 GHSILAAHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKIL-RGANFVEHTSEIGWKLNRKAKWDIIDLK-YF 248 (439)
T ss_pred CchhhHHHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHc-CCcccccCcccccHHHhcccCCcccccc-hh
Confidence 99999999999999999987 999999999999999999999999987 6799999999999999888888888988 66
Q ss_pred cCCcceeeeeecCCCCCCceeeeccceeeecHhHHHHcccccCCChHHHHHHhcCCCCCCCchhhhHhhcCCCCCccccc
Q 015651 210 LNKSEIWWVIKQRSIPSAFKLYTGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTAN 289 (403)
Q Consensus 210 ~~k~~~~~~~~kR~~P~~~~l~~GS~W~~LsR~fvey~i~~~d~lpr~ll~yf~~~~~pdE~fFqTvl~Ns~~f~~t~vn 289 (403)
.+++.++|.+ +|.++++++||.|++|||+||+||+++ ++|+++++||+++++|||+||||++||+ |..+.++
T Consensus 249 ~~~s~~~~~~----lp~~~ki~~Gs~~~~LsR~fv~y~i~~--~~~~~ll~~~~~t~~~dE~f~~Tl~~n~--~~~~g~~ 320 (439)
T KOG0799|consen 249 RNKSPLPWVI----LPTALKLFKGSAWVSLSRAFVEYLISG--NLPRTLLMYYNNTYSPDEGFFHTLQCNP--FGMPGVF 320 (439)
T ss_pred eecCCCcccc----CCCceEEEecceeEEEeHHHHHHHhcC--ccHHHHHHHHhCccCcchhhhHhhhccc--cCCCCcc
Confidence 6777887765 999999999999999999999999996 7899999999999999999999999998 8888899
Q ss_pred Cc--eeeEecCC----CCCCCCCCCCHHHHHHHhcCCC-cEEeccCC--ChHHHHHHHHHHhcccCCCcccCccccCCCC
Q 015651 290 HD--LHYITWDT----PPKQHPRSLGLKDFRRMVLSSR-PFARKFKQ--NSPVLDKIDRDLLKRHRRRYTNGGWCSESER 360 (403)
Q Consensus 290 ~n--LRyi~W~~----~~~~~P~~L~~~D~~~l~~S~a-~FARKF~~--d~~lld~Id~~ll~r~~~~~~~g~w~~~~~~ 360 (403)
++ +||+.|+. ++++||+.++..|+..|..++. .|||||.. ++++++++|.+++++.....++|+|| ..+.
T Consensus 321 ~~~~lr~~~W~~~~~~~~~~~c~~~~~~~~~cv~g~~~~~~~~k~~~l~~nkvl~~~d~~~i~c~~~~~~~~~~~-~~~~ 399 (439)
T KOG0799|consen 321 NDECLRYTNWDRKDVDPPKQHCHSLTVRDFICVFGSGDLPFARKFPHLVANKVLDKFDPELIGCLAEFNRTGGWC-DHSL 399 (439)
T ss_pred cchhhcceecccccccccccCCcccccccceeeeecchhHHHhhCchhhcccchhccCHHHHhhhhhccCccccc-cccc
Confidence 99 99999998 6788999999999999999998 99999995 89999999999999887788899999 4447
Q ss_pred CCCccccccCCCCcccCCchhHHHHHHHHHhhcccCCcCCC
Q 015651 361 DQACSGFQSENYGVLRPGPGSRRLKNLLTKLISARNFTKRQ 401 (403)
Q Consensus 361 ~~~~c~~~g~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ 401 (403)
.+++|+..|+. ..+.|||++.|++.++..++..++|+..|
T Consensus 400 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (439)
T KOG0799|consen 400 RTLPCSELGDA-VKLTPGPGAPRLEELCTPLLSHENFRLYQ 439 (439)
T ss_pred ccccccccccc-eeeccCCcchhHHhhhhccccchhhhccC
Confidence 89999999999 99999999999999999999999999876
No 3
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=9.5e-54 Score=407.79 Aligned_cols=237 Identities=35% Similarity=0.563 Sum_probs=158.8
Q ss_pred EEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHHH
Q 015651 58 FAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLAT 137 (403)
Q Consensus 58 iAYLI~~hk~d~~~l~rLl~aLyhp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 137 (403)
|||||++|+++++++++|++++|||+|.||||||+|++...+.+++... .+++||+++++++.|.|||+|||+|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~~~~~f~iHiD~k~~~~~~~~~~~~~------~~~~nv~~v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYHPDNDFYIHIDKKSPDYFYEEIKKLI------SCFPNVHFVPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH--TTSEEEEEE-TTS-HHHHHHHHHHH------CT-TTEEE-SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcCCCCEEEEEEcCCCChHHHHHHHHhc------ccCCceeecccccccccCCccHHHH
Confidence 7999999998999999999999999999999999999988888777543 4889999999999999999999999
Q ss_pred HHHHHHHHHhCC-CCcEEEeccCCceeccchhhHHHHHccCCCCcceEecccCCCccccccccccccCCCccccCCccee
Q 015651 138 TLHAIAMLLRCC-KWDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIW 216 (403)
Q Consensus 138 tL~~~~~lL~~~-~wdyfi~LSgsDyPL~t~~~i~~~fs~~~~~~nFIe~~~~~gwk~~~R~~~~i~dpgly~~~k~~~~ 216 (403)
||.||+.|++.. .|||||+|||+||||+|+++|.++|+..+++.+|+++....++....|+++...++..+.
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~------- 147 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPF------- 147 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEE-------
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeecccc-------
Confidence 999999999954 599999999999999999999999998777889999876655433244433222211110
Q ss_pred eeeecCCCCCCceeeeccceeeecHhHHHHcccccCCChHHHHHHh-cCCCCCCCchhhhHhhcCCCCCcccccCceeeE
Q 015651 217 WVIKQRSIPSAFKLYTGSAWTILSRPFAEYCIMGWDNLPRSLLLYY-TNFVSSPEGYFQTVICNSEDYKNTTANHDLHYI 295 (403)
Q Consensus 217 ~~~~kR~~P~~~~l~~GS~W~~LsR~fvey~i~~~d~lpr~ll~yf-~~~~~pdE~fFqTvl~Ns~~f~~t~vn~nLRyi 295 (403)
..++ ++|+|||||+|||++|+|++. |......+++| +++++|||+||||+++|++.|+++++|+++|||
T Consensus 148 --~~~~------~~~~GSqW~~Ltr~~v~~il~--~~~~~~~~~~~~~~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i 217 (244)
T PF02485_consen 148 --FRKR------TLYKGSQWFSLTRDFVEYILD--DPNYRPKLKKYFRFSLCPDESFFQTLLNNSGHFKDTIVNRNLRYI 217 (244)
T ss_dssp --EEEE--------EEE-S--EEEHHHHHHHHH---HHHHHHHHHHT-TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE
T ss_pred --cccc------cccccceeeEeeHHHHHHhhh--hHHHHHHHHHhhcCccCcchhhHHHhhcccchhcccccCCCEEEE
Confidence 1111 899999999999999999996 44344445545 599999999999999999889999999999999
Q ss_pred ecCCCCCCCCCC-----CCHHHHHHHh
Q 015651 296 TWDTPPKQHPRS-----LGLKDFRRMV 317 (403)
Q Consensus 296 ~W~~~~~~~P~~-----L~~~D~~~l~ 317 (403)
+|++..+.||++ ++++|++.|.
T Consensus 218 ~W~~~~~~~p~~~~~~~~~~~d~~~~~ 244 (244)
T PF02485_consen 218 DWSRRGGCHPKTLTICDLGPEDLPWLK 244 (244)
T ss_dssp -BTGT-SS---SSEEEE--GGGHHHH-
T ss_pred ECCCCCCCCCCeeeeeeeCHHHHHhhC
Confidence 999444566655 5788888773
No 4
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=93.59 E-value=4.8 Score=41.07 Aligned_cols=114 Identities=13% Similarity=0.094 Sum_probs=71.3
Q ss_pred CCCCCeEEEEEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCc-cee
Q 015651 52 SSYPVTFAYLLSASKGDTIKLKRALLALYH---PGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKP-NLV 127 (403)
Q Consensus 52 ~~~~~kiAYLI~~hk~d~~~l~rLl~aLyh---p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~-~~V 127 (403)
++..|++..+|-+++ ..+.+.++|+.|.. |++.=+|-+|-.+.+.-.+.++++.+..| ..++++++... ...
T Consensus 36 ~~~~p~VSVIIpa~N-e~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~---~~~~i~vi~~~~~~~ 111 (384)
T TIGR03469 36 PEAWPAVVAVVPARN-EADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYG---RGDRLTVVSGQPLPP 111 (384)
T ss_pred CCCCCCEEEEEecCC-cHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcC---CCCcEEEecCCCCCC
Confidence 456688999999998 68999999999863 33444677888777665554544432222 12378888632 234
Q ss_pred eecCccHHHHHHHHHHHHHhCCC-CcEEEeccCCceeccchhhHHHH
Q 015651 128 TYRGPTMLATTLHAIAMLLRCCK-WDWFINLSASDYPLVTQDDLIEA 173 (403)
Q Consensus 128 ~wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSgsDyPL~t~~~i~~~ 173 (403)
.|+|- ..|.-.+++.+-+... -||++.+.+.+.+ ..+.|.+.
T Consensus 112 g~~Gk--~~A~n~g~~~A~~~~~~gd~llflDaD~~~--~p~~l~~l 154 (384)
T TIGR03469 112 GWSGK--LWAVSQGIAAARTLAPPADYLLLTDADIAH--GPDNLARL 154 (384)
T ss_pred CCcch--HHHHHHHHHHHhccCCCCCEEEEECCCCCC--ChhHHHHH
Confidence 55543 3444455555543333 7999999998886 33444443
No 5
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=90.46 E-value=6.9 Score=39.71 Aligned_cols=106 Identities=12% Similarity=0.081 Sum_probs=63.3
Q ss_pred CCCeEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccc--eEEeCCcceee
Q 015651 54 YPVTFAYLLSASKGDTIKLKRALLALY---HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNN--VYIVGKPNLVT 128 (403)
Q Consensus 54 ~~~kiAYLI~~hk~d~~~l~rLl~aLy---hp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~N--V~vv~~~~~V~ 128 (403)
..|++..+|-+++ ..+.+.+.|+.+- .|+-.++| +|..+++...+.+++..+ .+++ |+++.......
T Consensus 39 ~~p~VSViiP~~n-ee~~l~~~L~Sl~~q~Yp~~EIiv-vdd~s~D~t~~iv~~~~~------~~p~~~i~~v~~~~~~G 110 (373)
T TIGR03472 39 AWPPVSVLKPLHG-DEPELYENLASFCRQDYPGFQMLF-GVQDPDDPALAVVRRLRA------DFPDADIDLVIDARRHG 110 (373)
T ss_pred CCCCeEEEEECCC-CChhHHHHHHHHHhcCCCCeEEEE-EeCCCCCcHHHHHHHHHH------hCCCCceEEEECCCCCC
Confidence 3577999999998 5677888888774 35545544 666665554444444332 4555 55564333223
Q ss_pred ecCccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHHc
Q 015651 129 YRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFS 175 (403)
Q Consensus 129 wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~fs 175 (403)
|.+ .+.+..+ +++....||++.+.+.+.| +.+-|.+...
T Consensus 111 ~~~--K~~~l~~----~~~~a~ge~i~~~DaD~~~--~p~~L~~lv~ 149 (373)
T TIGR03472 111 PNR--KVSNLIN----MLPHARHDILVIADSDISV--GPDYLRQVVA 149 (373)
T ss_pred CCh--HHHHHHH----HHHhccCCEEEEECCCCCc--ChhHHHHHHH
Confidence 322 3334333 3444558999999998877 5666655543
No 6
>PRK11204 N-glycosyltransferase; Provisional
Probab=88.29 E-value=6.8 Score=40.07 Aligned_cols=105 Identities=7% Similarity=0.150 Sum_probs=64.0
Q ss_pred CCCCeEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeee
Q 015651 53 SYPVTFAYLLSASKGDTIKLKRALLALY---HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTY 129 (403)
Q Consensus 53 ~~~~kiAYLI~~hk~d~~~l~rLl~aLy---hp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~w 129 (403)
+..|+++.+|-+|+ ..+.+.+.++++. .|...++ =+|-.+++...+.+++.. ..++++.++.... .
T Consensus 51 ~~~p~vsViIp~yn-e~~~i~~~l~sl~~q~yp~~eii-VvdD~s~d~t~~~l~~~~------~~~~~v~~i~~~~---n 119 (420)
T PRK11204 51 KEYPGVSILVPCYN-EGENVEETISHLLALRYPNYEVI-AINDGSSDNTGEILDRLA------AQIPRLRVIHLAE---N 119 (420)
T ss_pred CCCCCEEEEEecCC-CHHHHHHHHHHHHhCCCCCeEEE-EEECCCCccHHHHHHHHH------HhCCcEEEEEcCC---C
Confidence 44678999999999 6788999888875 3544544 466656555555444432 2567888876221 1
Q ss_pred cCccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccc-hhhHHHHH
Q 015651 130 RGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVT-QDDLIEAF 174 (403)
Q Consensus 130 gg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t-~~~i~~~f 174 (403)
+| ... ++..+++....||++.+.+.+.|-.. ..++.+.|
T Consensus 120 ~G--ka~----aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~ 159 (420)
T PRK11204 120 QG--KAN----ALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHF 159 (420)
T ss_pred CC--HHH----HHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHH
Confidence 23 222 22334444458999999999987332 23444444
No 7
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=88.04 E-value=15 Score=38.19 Aligned_cols=107 Identities=7% Similarity=0.107 Sum_probs=63.5
Q ss_pred CCCCeEEEEEEecCCCHHHHHHHHHHHc---CCCCE-EEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceee
Q 015651 53 SYPVTFAYLLSASKGDTIKLKRALLALY---HPGNH-YLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVT 128 (403)
Q Consensus 53 ~~~~kiAYLI~~hk~d~~~l~rLl~aLy---hp~n~-y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~ 128 (403)
+..|+++.+|-+|+ ..+.+.++|+++. .|... -+|=+|-.++++..+.+++.. ..++++.++.... .
T Consensus 46 ~~~P~vsVIIP~yN-e~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~------~~~~~v~v~~~~~--~ 116 (439)
T TIGR03111 46 GKLPDITIIIPVYN-SEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQ------NEFPGLSLRYMNS--D 116 (439)
T ss_pred CCCCCEEEEEEeCC-ChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHH------HhCCCeEEEEeCC--C
Confidence 45678999999999 6799999998885 34432 256667777666544444322 2456776642111 1
Q ss_pred ecCccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccc-hhhHHHHHc
Q 015651 129 YRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVT-QDDLIEAFS 175 (403)
Q Consensus 129 wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t-~~~i~~~fs 175 (403)
+|.+ . ++..+++...-||++.+.+.+.|-.. ..++...|.
T Consensus 117 -~Gka---~---AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~ 157 (439)
T TIGR03111 117 -QGKA---K---ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFE 157 (439)
T ss_pred -CCHH---H---HHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHH
Confidence 3422 1 22233444457899999999998332 233444443
No 8
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=85.22 E-value=12 Score=34.29 Aligned_cols=99 Identities=15% Similarity=0.221 Sum_probs=60.3
Q ss_pred eEEEEEEecCCCHHHHHHHHHHHcC---C-CCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCc
Q 015651 57 TFAYLLSASKGDTIKLKRALLALYH---P-GNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGP 132 (403)
Q Consensus 57 kiAYLI~~hk~d~~~l~rLl~aLyh---p-~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~ 132 (403)
+++.+|.+++ +.+.+.++|+.+.. | .+.=+|=+|-.+++.....++... ...++|+++.... +|.
T Consensus 1 ~~sIiip~~n-~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~------~~~~~v~~i~~~~----~~~ 69 (249)
T cd02525 1 FVSIIIPVRN-EEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYA------AKDPRIRLIDNPK----RIQ 69 (249)
T ss_pred CEEEEEEcCC-chhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHH------hcCCeEEEEeCCC----CCc
Confidence 4678888888 78899999988852 2 233345556666555444444322 2456788886442 121
Q ss_pred cHHHHHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHH
Q 015651 133 TMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAF 174 (403)
Q Consensus 133 S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~f 174 (403)
-.|-- .+++....||++.|.+.|.+ +.+.|...+
T Consensus 70 --~~a~N----~g~~~a~~d~v~~lD~D~~~--~~~~l~~~~ 103 (249)
T cd02525 70 --SAGLN----IGIRNSRGDIIIRVDAHAVY--PKDYILELV 103 (249)
T ss_pred --hHHHH----HHHHHhCCCEEEEECCCccC--CHHHHHHHH
Confidence 12322 23333358999999999986 555565555
No 9
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=80.88 E-value=24 Score=32.73 Aligned_cols=106 Identities=17% Similarity=0.178 Sum_probs=64.2
Q ss_pred CCCCCCCeEEEEEEecCCCHHHHHHHHHHHcC---CC--CEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCc
Q 015651 50 NNSSYPVTFAYLLSASKGDTIKLKRALLALYH---PG--NHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKP 124 (403)
Q Consensus 50 ~~~~~~~kiAYLI~~hk~d~~~l~rLl~aLyh---p~--n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~ 124 (403)
+.....|+++.+|.+++ ..+.+.++|+.+.. +. ..++|..|... +...+.++++. .. +|.++...
T Consensus 23 ~~~~~~~~isVvip~~n-~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~-------~~-~v~~i~~~ 92 (251)
T cd06439 23 PDPAYLPTVTIIIPAYN-EEAVIEAKLENLLALDYPRDRLEIIVVSDGST-DGTAEIAREYA-------DK-GVKLLRFP 92 (251)
T ss_pred CCCCCCCEEEEEEecCC-cHHHHHHHHHHHHhCcCCCCcEEEEEEECCCC-ccHHHHHHHHh-------hC-cEEEEEcC
Confidence 34556789999999998 67889988888743 33 35666666544 33333333221 11 67776432
Q ss_pred ceeeecCccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHHcc
Q 015651 125 NLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSD 176 (403)
Q Consensus 125 ~~V~wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~fs~ 176 (403)
.. .| ...|--.+++.+ .-||++.+.+.+.|- .+.|.+.+..
T Consensus 93 ~~---~g--~~~a~n~gi~~a----~~d~i~~lD~D~~~~--~~~l~~l~~~ 133 (251)
T cd06439 93 ER---RG--KAAALNRALALA----TGEIVVFTDANALLD--PDALRLLVRH 133 (251)
T ss_pred CC---CC--hHHHHHHHHHHc----CCCEEEEEccccCcC--HHHHHHHHHH
Confidence 21 22 344444444432 349999999999995 5666555543
No 10
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=80.81 E-value=20 Score=37.40 Aligned_cols=94 Identities=9% Similarity=0.135 Sum_probs=60.4
Q ss_pred CCCeEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeec
Q 015651 54 YPVTFAYLLSASKGDTIKLKRALLALY---HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYR 130 (403)
Q Consensus 54 ~~~kiAYLI~~hk~d~~~l~rLl~aLy---hp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wg 130 (403)
..|+++.+|-+|+ +...+.++|+++- .|+-. +|-+|-.+++...+.+++..+ .+++++++... ..+
T Consensus 73 ~~p~vsViIP~yN-E~~~i~~~l~sll~q~yp~~e-IivVdDgs~D~t~~~~~~~~~------~~~~v~vv~~~---~n~ 141 (444)
T PRK14583 73 GHPLVSILVPCFN-EGLNARETIHAALAQTYTNIE-VIAINDGSSDDTAQVLDALLA------EDPRLRVIHLA---HNQ 141 (444)
T ss_pred CCCcEEEEEEeCC-CHHHHHHHHHHHHcCCCCCeE-EEEEECCCCccHHHHHHHHHH------hCCCEEEEEeC---CCC
Confidence 4578999999999 6778888888875 35434 456666666655555554332 45778776421 123
Q ss_pred CccHHHHHHHHHHHHHhCCCCcEEEeccCCceec
Q 015651 131 GPTMLATTLHAIAMLLRCCKWDWFINLSASDYPL 164 (403)
Q Consensus 131 g~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL 164 (403)
| . . .++...++....||++.+.+.+.|-
T Consensus 142 G--k-a---~AlN~gl~~a~~d~iv~lDAD~~~~ 169 (444)
T PRK14583 142 G--K-A---IALRMGAAAARSEYLVCIDGDALLD 169 (444)
T ss_pred C--H-H---HHHHHHHHhCCCCEEEEECCCCCcC
Confidence 3 1 1 2333344445689999999999873
No 11
>PRK10063 putative glycosyl transferase; Provisional
Probab=80.14 E-value=34 Score=32.65 Aligned_cols=101 Identities=14% Similarity=0.173 Sum_probs=62.0
Q ss_pred CeEEEEEEecCCCHHHHHHHHHHHcC-----CCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeec
Q 015651 56 VTFAYLLSASKGDTIKLKRALLALYH-----PGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYR 130 (403)
Q Consensus 56 ~kiAYLI~~hk~d~~~l~rLl~aLyh-----p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wg 130 (403)
|++..+|.+++ ..+.+.+.|+.|.. ..+.=+|=+|-.|++.-.+-++++. ...+++++..++ .
T Consensus 1 ~~vSVIi~~yN-~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~-------~~~~i~~i~~~~----~ 68 (248)
T PRK10063 1 MLLSVITVAFR-NLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLN-------GIFNLRFVSEPD----N 68 (248)
T ss_pred CeEEEEEEeCC-CHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhc-------ccCCEEEEECCC----C
Confidence 67888999998 78889998888842 2345578888888776554444321 112577765332 2
Q ss_pred CccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHH
Q 015651 131 GPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAF 174 (403)
Q Consensus 131 g~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~f 174 (403)
|.. .|-=.+++. ..-||++.|.+.|.......++...+
T Consensus 69 G~~--~A~N~Gi~~----a~g~~v~~ld~DD~~~~~~~~~~~~~ 106 (248)
T PRK10063 69 GIY--DAMNKGIAM----AQGRFALFLNSGDIFHQDAANFVRQL 106 (248)
T ss_pred CHH--HHHHHHHHH----cCCCEEEEEeCCcccCcCHHHHHHHH
Confidence 322 222223333 34599999999999876443444444
No 12
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=78.46 E-value=32 Score=30.94 Aligned_cols=104 Identities=9% Similarity=0.063 Sum_probs=58.2
Q ss_pred CeEEEEEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCCHHHHHHHHHHhhccCcccccc--ceEEeCCcceeeec
Q 015651 56 VTFAYLLSASKGDTIKLKRALLALYH---PGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVN--NVYIVGKPNLVTYR 130 (403)
Q Consensus 56 ~kiAYLI~~hk~d~~~l~rLl~aLyh---p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~--NV~vv~~~~~V~wg 130 (403)
|++..+|-+++ ..+.+.++|+.|.. |... +|=+|-.+++...+.++++.+ .++ ++.++.....+ |
T Consensus 1 p~vsviip~~n-~~~~l~~~L~sl~~q~~~~~e-iivVdd~s~d~t~~~~~~~~~------~~~~~~~~~~~~~~~~--g 70 (196)
T cd02520 1 PGVSILKPLCG-VDPNLYENLESFFQQDYPKYE-ILFCVQDEDDPAIPVVRKLIA------KYPNVDARLLIGGEKV--G 70 (196)
T ss_pred CCeEEEEecCC-CCccHHHHHHHHHhccCCCeE-EEEEeCCCcchHHHHHHHHHH------HCCCCcEEEEecCCcC--C
Confidence 45788999998 56678888888852 4433 344666665554454544432 233 34444322222 2
Q ss_pred CccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHHc
Q 015651 131 GPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFS 175 (403)
Q Consensus 131 g~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~fs 175 (403)
+.....+ +..+++....||++.+.+.+.+ +.+-|.+.+.
T Consensus 71 ~~~~~~~----~n~g~~~a~~d~i~~~D~D~~~--~~~~l~~l~~ 109 (196)
T cd02520 71 INPKVNN----LIKGYEEARYDILVISDSDISV--PPDYLRRMVA 109 (196)
T ss_pred CCHhHHH----HHHHHHhCCCCEEEEECCCceE--ChhHHHHHHH
Confidence 2222222 2234444458999999887764 5666655543
No 13
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=78.19 E-value=1.3 Score=31.05 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=24.7
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEEEcC
Q 015651 62 LSASKGDTIKLKRALLALYHPGNHYLIHMDR 92 (403)
Q Consensus 62 I~~hk~d~~~l~rLl~aLyhp~n~y~IHlD~ 92 (403)
.+||. |.++|..+++.+ .|++.++||=|.
T Consensus 14 fSgHa-d~~~L~~~i~~~-~p~~vilVHGe~ 42 (43)
T PF07521_consen 14 FSGHA-DREELLEFIEQL-NPRKVILVHGEP 42 (43)
T ss_dssp CSSS--BHHHHHHHHHHH-CSSEEEEESSEH
T ss_pred ecCCC-CHHHHHHHHHhc-CCCEEEEecCCC
Confidence 47888 999999999999 799999999653
No 14
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=78.06 E-value=32 Score=36.94 Aligned_cols=101 Identities=12% Similarity=0.016 Sum_probs=60.1
Q ss_pred CCCeEEEEEEecCCCHHHHHHHHHH----HcCCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeee
Q 015651 54 YPVTFAYLLSASKGDTIKLKRALLA----LYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTY 129 (403)
Q Consensus 54 ~~~kiAYLI~~hk~d~~~l~rLl~a----Lyhp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~w 129 (403)
+.|+++.+|-+|+ ..+.+.++|+. ++.|+-.++|=.|. ++++-.+.+++.. ..++|++++..+. -
T Consensus 64 ~~p~vaIlIPA~N-E~~vI~~~l~s~L~~ldY~~~eIiVv~d~-ndd~T~~~v~~l~------~~~p~v~~vv~~~---~ 132 (504)
T PRK14716 64 PEKRIAIFVPAWR-EADVIGRMLEHNLATLDYENYRIFVGTYP-NDPATLREVDRLA------ARYPRVHLVIVPH---D 132 (504)
T ss_pred CCCceEEEEeccC-chhHHHHHHHHHHHcCCCCCeEEEEEECC-CChhHHHHHHHHH------HHCCCeEEEEeCC---C
Confidence 4788999999999 67777777764 33455455555554 3333333344322 3678887553211 1
Q ss_pred cCccHHHHHHHHHHHHHh----CCC-CcEEEeccCCceecc
Q 015651 130 RGPTMLATTLHAIAMLLR----CCK-WDWFINLSASDYPLV 165 (403)
Q Consensus 130 gg~S~V~AtL~~~~~lL~----~~~-wdyfi~LSgsDyPL~ 165 (403)
|+.+...|-=.+++.+.. .+. +|+++.+-+.|.|=.
T Consensus 133 gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~P 173 (504)
T PRK14716 133 GPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHP 173 (504)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCc
Confidence 344555555445554422 233 899999999888543
No 15
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=76.88 E-value=22 Score=32.36 Aligned_cols=125 Identities=16% Similarity=0.157 Sum_probs=72.8
Q ss_pred EEEecCCCHHHHHHHHHHH----cCCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHH
Q 015651 61 LLSASKGDTIKLKRALLAL----YHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLA 136 (403)
Q Consensus 61 LI~~hk~d~~~l~rLl~aL----yhp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 136 (403)
+|++++|-..||.+|++.+ ++++.++ |--+.+.+...-.++++......-....+..+-+.+. -.+.=++++.
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~i-vt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~--~~~~~~~~l~ 79 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYI-VTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQS--YLTSIFTTLR 79 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEE-EEcCCcccHHHHHHHHHhccccceeeccceEEEechh--hHhhHHHHHH
Confidence 5677777889999999999 6544333 3333333333222233221110001123334333322 1223467888
Q ss_pred HHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHHccCCCCcceEeccc
Q 015651 137 TTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSS 188 (403)
Q Consensus 137 AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~fs~~~~~~nFIe~~~ 188 (403)
+.+.++..+.+..+==-+-|=.|.++|+.=..-+.++|.-.....-|||...
T Consensus 80 ~~~~~~~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~a 131 (170)
T PF08660_consen 80 AFLQSLRILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESFA 131 (170)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 8888888887755433455778899999988888887764444467888744
No 16
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=75.77 E-value=27 Score=30.96 Aligned_cols=94 Identities=14% Similarity=0.144 Sum_probs=53.0
Q ss_pred CeEEEEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEcCCCCHHHHHHH-HHHhhccCccccccceEEeCCcceeeecCc
Q 015651 56 VTFAYLLSASKGDTIKLKRALLALYHP--GNHYLIHMDREAPEKEQREI-AEFVANEPVFRMVNNVYIVGKPNLVTYRGP 132 (403)
Q Consensus 56 ~kiAYLI~~hk~d~~~l~rLl~aLyhp--~n~y~IHlD~ka~~~~~~~l-~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~ 132 (403)
|++..+|.++++..+.+.++|+.|... .+.-+|=+|-.+++..-..+ +.+.. ..+++.++.... ..
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~------~~~~~~~~~~~~-----~~ 69 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAA------QDPRIKVVFREE-----NG 69 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHh------cCCCEEEEEccc-----CC
Confidence 467889999984339999999999642 12234555665554322222 22221 235676653221 12
Q ss_pred cHHHHHHHHHHHHHhCCCCcEEEeccCCceec
Q 015651 133 TMLATTLHAIAMLLRCCKWDWFINLSASDYPL 164 (403)
Q Consensus 133 S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL 164 (403)
....|--.+++. ..-||+..+.+.|.+-
T Consensus 70 g~~~a~n~g~~~----a~~d~i~~ld~D~~~~ 97 (202)
T cd04184 70 GISAATNSALEL----ATGEFVALLDHDDELA 97 (202)
T ss_pred CHHHHHHHHHHh----hcCCEEEEECCCCcCC
Confidence 233343334433 3369999999888763
No 17
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=75.73 E-value=58 Score=32.65 Aligned_cols=112 Identities=10% Similarity=0.100 Sum_probs=61.7
Q ss_pred CCCCCeEEEEEEecCCCHHHHHHHHHHHcC----------CCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEe
Q 015651 52 SSYPVTFAYLLSASKGDTIKLKRALLALYH----------PGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIV 121 (403)
Q Consensus 52 ~~~~~kiAYLI~~hk~d~~~l~rLl~aLyh----------p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv 121 (403)
.+..+.+..+|-+++ ..+.+.++|+.+.. ..+.=+|=||-.|++.-.+.++++.+... ..-.+++++
T Consensus 66 ~~~~~~isVVIP~yN-e~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~--~~~~~i~vi 142 (333)
T PTZ00260 66 KDSDVDLSIVIPAYN-EEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNI--NPNIDIRLL 142 (333)
T ss_pred CCCCeEEEEEEeeCC-CHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcC--CCCCcEEEE
Confidence 567789999999999 67888888877642 22334566777676654444444332110 001347777
Q ss_pred CCcceeeecCccHHHHHHHHHHHHHhCCCCcEEEeccCCce-eccchhhHHHHHc
Q 015651 122 GKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDY-PLVTQDDLIEAFS 175 (403)
Q Consensus 122 ~~~~~V~wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDy-PL~t~~~i~~~fs 175 (403)
..... .| .-.|.-.+++. ..-||++.+.+.+. +....+.+.+.+.
T Consensus 143 ~~~~N---~G--~~~A~~~Gi~~----a~gd~I~~~DaD~~~~~~~l~~l~~~l~ 188 (333)
T PTZ00260 143 SLLRN---KG--KGGAVRIGMLA----SRGKYILMVDADGATDIDDFDKLEDIML 188 (333)
T ss_pred EcCCC---CC--hHHHHHHHHHH----ccCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 43221 12 22333333332 23588888887764 3333444555443
No 18
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=75.24 E-value=13 Score=33.97 Aligned_cols=113 Identities=16% Similarity=0.243 Sum_probs=54.2
Q ss_pred CeEEEEEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccc--eEEeCCcceeeec
Q 015651 56 VTFAYLLSASKGDTIKLKRALLALYH---PGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNN--VYIVGKPNLVTYR 130 (403)
Q Consensus 56 ~kiAYLI~~hk~d~~~l~rLl~aLyh---p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~N--V~vv~~~~~V~wg 130 (403)
|+++.+|.+++ ..+.+.+.|+++-+ ++-.++| +|-.+++...+.+++..+ .+++ |+++.... -.
T Consensus 1 P~v~Vvip~~~-~~~~l~~~l~sl~~~~~~~~~v~v-vd~~~~~~~~~~~~~~~~------~~~~~~v~vi~~~~---~~ 69 (228)
T PF13641_consen 1 PRVSVVIPAYN-EDDVLRRCLESLLAQDYPRLEVVV-VDDGSDDETAEILRALAA------RYPRVRVRVIRRPR---NP 69 (228)
T ss_dssp --EEEE--BSS--HHHHHHHHHHHTTSHHHTEEEEE-EEE-SSS-GCTTHHHHHH------TTGG-GEEEEE-------H
T ss_pred CEEEEEEEecC-CHHHHHHHHHHHHcCCCCCeEEEE-EECCCChHHHHHHHHHHH------HcCCCceEEeecCC---CC
Confidence 56899999998 78899999999974 4444444 554444443333443332 3343 46653211 11
Q ss_pred Cc-cHHHHHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHHccC-CCCcceEe
Q 015651 131 GP-TMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDL-PRDLNFIQ 185 (403)
Q Consensus 131 g~-S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~fs~~-~~~~nFIe 185 (403)
|. +...|.-++++ ....||++.|.+.+.| ..+-|...+... ..+...+.
T Consensus 70 g~~~k~~a~n~~~~----~~~~d~i~~lD~D~~~--~p~~l~~~~~~~~~~~~~~v~ 120 (228)
T PF13641_consen 70 GPGGKARALNEALA----AARGDYILFLDDDTVL--DPDWLERLLAAFADPGVGAVG 120 (228)
T ss_dssp HHHHHHHHHHHHHH----H---SEEEEE-SSEEE---CHHHHHHHHHHHBSS--EEE
T ss_pred CcchHHHHHHHHHH----hcCCCEEEEECCCcEE--CHHHHHHHHHHHHhCCCCeEe
Confidence 22 33333334333 3447999999999998 444444433322 33455554
No 19
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=74.43 E-value=44 Score=31.22 Aligned_cols=108 Identities=9% Similarity=0.189 Sum_probs=60.4
Q ss_pred CCCCCeEEEEEEecCCCHHHHHHHHHHHc----CCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCccee
Q 015651 52 SSYPVTFAYLLSASKGDTIKLKRALLALY----HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLV 127 (403)
Q Consensus 52 ~~~~~kiAYLI~~hk~d~~~l~rLl~aLy----hp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V 127 (403)
.+..|++..+|-+++ ..+.+..+++.|. ...+.=+|-+|-.|++.-.+.++++.+.. ...+|.++....
T Consensus 5 ~~~~~~vsVvIp~yn-e~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~----~~~~v~~~~~~~-- 77 (243)
T PLN02726 5 GEGAMKYSIIVPTYN-ERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVY----GEDRILLRPRPG-- 77 (243)
T ss_pred CCCCceEEEEEccCC-chhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhc----CCCcEEEEecCC--
Confidence 344678999999998 6777777666553 23244467778777665444444322111 123566553211
Q ss_pred eecCccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHHc
Q 015651 128 TYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFS 175 (403)
Q Consensus 128 ~wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~fs 175 (403)
-.|.+ .|--.+++ ...-||++.+.+.+.+ ..+.|...+.
T Consensus 78 -n~G~~--~a~n~g~~----~a~g~~i~~lD~D~~~--~~~~l~~l~~ 116 (243)
T PLN02726 78 -KLGLG--TAYIHGLK----HASGDFVVIMDADLSH--HPKYLPSFIK 116 (243)
T ss_pred -CCCHH--HHHHHHHH----HcCCCEEEEEcCCCCC--CHHHHHHHHH
Confidence 12322 23333333 3346899999998874 5555555443
No 20
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=71.79 E-value=29 Score=31.93 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=58.3
Q ss_pred CeEEEEEEecCCCHHHHHHHHHHHcC---CC-CEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecC
Q 015651 56 VTFAYLLSASKGDTIKLKRALLALYH---PG-NHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRG 131 (403)
Q Consensus 56 ~kiAYLI~~hk~d~~~l~rLl~aLyh---p~-n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg 131 (403)
|++..+|.+|+ ..+.+.++|++|.. |. ..-+|=+|- +++.....+++..+..+ ....+|..+...... |
T Consensus 1 p~vSViIp~yN-e~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~--~~~~~i~~~~~~~~~---G 73 (232)
T cd06437 1 PMVTVQLPVFN-EKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYA--AQGVNIKHVRRADRT---G 73 (232)
T ss_pred CceEEEEecCC-cHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHh--hcCCceEEEECCCCC---C
Confidence 46788999998 78999999999853 32 223445786 65554444444332110 112455555322221 2
Q ss_pred ccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHH
Q 015651 132 PTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIE 172 (403)
Q Consensus 132 ~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~ 172 (403)
+. .. ++...++....||++.+.+.+++ ..+-|.+
T Consensus 74 ~k-~~----a~n~g~~~a~~~~i~~~DaD~~~--~~~~l~~ 107 (232)
T cd06437 74 YK-AG----ALAEGMKVAKGEYVAIFDADFVP--PPDFLQK 107 (232)
T ss_pred Cc-hH----HHHHHHHhCCCCEEEEEcCCCCC--ChHHHHH
Confidence 21 11 12233344458999999999887 4444544
No 21
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=70.93 E-value=31 Score=33.82 Aligned_cols=90 Identities=13% Similarity=0.143 Sum_probs=60.7
Q ss_pred CCeEEEEEEecCCCHHHHHHHHHHHcCCCCE--EEEEEcCCCCHHHHHHHHHHhhccCcccc-ccceEEeCCcceeeecC
Q 015651 55 PVTFAYLLSASKGDTIKLKRALLALYHPGNH--YLIHMDREAPEKEQREIAEFVANEPVFRM-VNNVYIVGKPNLVTYRG 131 (403)
Q Consensus 55 ~~kiAYLI~~hk~d~~~l~rLl~aLyhp~n~--y~IHlD~ka~~~~~~~l~~~v~~~~~~~~-~~NV~vv~~~~~V~wgg 131 (403)
.++++-+|..|. ..+.+...|..|...... ++|=+|-.+++.....+++ . +++|.++.......|+|
T Consensus 2 ~~~i~~iiv~yn-~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~---------~~~~~v~~i~~~~NlG~ag 71 (305)
T COG1216 2 MPKISIIIVTYN-RGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKA---------RFFPNVRLIENGENLGFAG 71 (305)
T ss_pred CcceEEEEEecC-CHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHh---------hcCCcEEEEEcCCCccchh
Confidence 367888899998 688888888888743332 2334688777776665553 2 79999998777677665
Q ss_pred ccHHHHHHHHHHHHHhCCCCcEEEeccCCc
Q 015651 132 PTMLATTLHAIAMLLRCCKWDWFINLSASD 161 (403)
Q Consensus 132 ~S~V~AtL~~~~~lL~~~~wdyfi~LSgsD 161 (403)
--. .+++.++..+ .+| +++-..|
T Consensus 72 g~n-----~g~~~a~~~~-~~~-~l~LN~D 94 (305)
T COG1216 72 GFN-----RGIKYALAKG-DDY-VLLLNPD 94 (305)
T ss_pred hhh-----HHHHHHhcCC-CcE-EEEEcCC
Confidence 544 5677777653 224 4444555
No 22
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=70.13 E-value=47 Score=30.86 Aligned_cols=96 Identities=16% Similarity=0.288 Sum_probs=59.0
Q ss_pred eEEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHH
Q 015651 57 TFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLA 136 (403)
Q Consensus 57 kiAYLI~~hk~d~~~l~rLl~aLyhp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 136 (403)
++..+|.+++ ..+.+.++|..|..--.. +|=+|-.|.+... ++++ ..++.++.. .|+|++.-
T Consensus 1 ~isvii~~~N-e~~~l~~~l~sl~~~~~e-iivvD~gStD~t~-~i~~----------~~~~~v~~~----~~~g~~~~- 62 (229)
T cd02511 1 TLSVVIITKN-EERNIERCLESVKWAVDE-IIVVDSGSTDRTV-EIAK----------EYGAKVYQR----WWDGFGAQ- 62 (229)
T ss_pred CEEEEEEeCC-cHHHHHHHHHHHhcccCE-EEEEeCCCCccHH-HHHH----------HcCCEEEEC----CCCChHHH-
Confidence 3677888988 789999999999743133 4557877766533 3321 235666542 56666422
Q ss_pred HHHHHHHHHHhCCCCcEEEeccCCceeccc-hhhHHHHHc
Q 015651 137 TTLHAIAMLLRCCKWDWFINLSASDYPLVT-QDDLIEAFS 175 (403)
Q Consensus 137 AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t-~~~i~~~fs 175 (403)
. ..++....-||++.|.+.+.+-.. .+++.+.+.
T Consensus 63 --~---n~~~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~ 97 (229)
T cd02511 63 --R---NFALELATNDWVLSLDADERLTPELADEILALLA 97 (229)
T ss_pred --H---HHHHHhCCCCEEEEEeCCcCcCHHHHHHHHHHHh
Confidence 2 223343446899999999986433 334555554
No 23
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=69.28 E-value=36 Score=33.89 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=54.3
Q ss_pred CCCeEEEEEEecCCCH--HHHHHHHHHH-----------cCCCCEEEEEEc--CCCCHHHHHHHHHHhhccCccc---cc
Q 015651 54 YPVTFAYLLSASKGDT--IKLKRALLAL-----------YHPGNHYLIHMD--REAPEKEQREIAEFVANEPVFR---MV 115 (403)
Q Consensus 54 ~~~kiAYLI~~hk~d~--~~l~rLl~aL-----------yhp~n~y~IHlD--~ka~~~~~~~l~~~v~~~~~~~---~~ 115 (403)
....+|||+.|..|-. .-...+.+++ .||+|..+ +| .+. -..+++++..+..|... ..
T Consensus 15 ~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~--~d~~g~~--i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 15 NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIIL--FDIFDKD--LSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEE--eccCCCc--CCHHHHHHHHHHhccCCcccCC
Confidence 3578999999987642 4445555665 25655544 47 332 11233443333333222 23
Q ss_pred cceEEeCCcceeeecCccHHHHHHHHHHHHHhCCC-CcEEEeccC
Q 015651 116 NNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSA 159 (403)
Q Consensus 116 ~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSg 159 (403)
..|.++.+. -.|-.+..+++-..|++++ .-+||+++.
T Consensus 91 ~KvvII~~~-------e~m~~~a~NaLLK~LEEPp~~t~~il~~~ 128 (299)
T PRK07132 91 KKILIIKNI-------EKTSNSLLNALLKTIEEPPKDTYFLLTTK 128 (299)
T ss_pred ceEEEEecc-------cccCHHHHHHHHHHhhCCCCCeEEEEEeC
Confidence 456555543 4444555666666778887 999998886
No 24
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=67.25 E-value=66 Score=29.14 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=56.9
Q ss_pred CeEEEEEEecCCCHHHHHHHHHHHcC---CCC-EEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecC
Q 015651 56 VTFAYLLSASKGDTIKLKRALLALYH---PGN-HYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRG 131 (403)
Q Consensus 56 ~kiAYLI~~hk~d~~~l~rLl~aLyh---p~n-~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg 131 (403)
|++..+|-+++.+.+.+++.|+.|-. |+. .=+|=+|-.+++...+.++.+.. .. ++.++... ..+|+
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~------~~-~~~~~~~~--~~~~~ 71 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGV------EY-GYRYLTRP--DNRHA 71 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhc------cc-CceEEEeC--CCCCC
Confidence 46788888988446778888888753 331 22344676666554444433211 11 34444322 23343
Q ss_pred ccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHHc
Q 015651 132 PTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFS 175 (403)
Q Consensus 132 ~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~fs 175 (403)
.. .+ +..+++...-||++.|.+.|++ ..+.|...++
T Consensus 72 ~~--~~----~n~~~~~a~~d~i~~lD~D~~~--~~~~l~~l~~ 107 (234)
T cd06421 72 KA--GN----LNNALAHTTGDFVAILDADHVP--TPDFLRRTLG 107 (234)
T ss_pred cH--HH----HHHHHHhCCCCEEEEEccccCc--CccHHHHHHH
Confidence 22 11 1223333357999999999998 4456655554
No 25
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=66.87 E-value=53 Score=29.52 Aligned_cols=99 Identities=17% Similarity=0.293 Sum_probs=54.1
Q ss_pred EEEecCCCHHHHHHHHHHHc---CCC--CEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHH
Q 015651 61 LLSASKGDTIKLKRALLALY---HPG--NHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTML 135 (403)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLy---hp~--n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V 135 (403)
+|.+++ +.+.+.++|+.|. +|. ..++|- |-.+++...+.++ +... ...++|.++.... ...+|.+
T Consensus 2 iip~~n-~~~~l~~~l~sl~~q~~~~~~~eiivv-dd~s~d~t~~~~~-~~~~----~~~~~v~~~~~~~-~~~~g~~-- 71 (229)
T cd04192 2 VIAARN-EAENLPRLLQSLSALDYPKEKFEVILV-DDHSTDGTVQILE-FAAA----KPNFQLKILNNSR-VSISGKK-- 71 (229)
T ss_pred EEEecC-cHHHHHHHHHHHHhCCCCCCceEEEEE-cCCCCcChHHHHH-HHHh----CCCcceEEeeccC-cccchhH--
Confidence 466776 7899999999884 343 345444 4445444333333 2211 1245677765332 1122222
Q ss_pred HHHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHHc
Q 015651 136 ATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFS 175 (403)
Q Consensus 136 ~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~fs 175 (403)
.| +..+++...-||++.+.+.+.+ ..+.|...+.
T Consensus 72 ~a----~n~g~~~~~~d~i~~~D~D~~~--~~~~l~~l~~ 105 (229)
T cd04192 72 NA----LTTAIKAAKGDWIVTTDADCVV--PSNWLLTFVA 105 (229)
T ss_pred HH----HHHHHHHhcCCEEEEECCCccc--CHHHHHHHHH
Confidence 22 2223343447999999999977 4566655554
No 26
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=66.87 E-value=67 Score=26.97 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=52.9
Q ss_pred EEEecCCCHHHHHHHHHHHcCC---CCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHHH
Q 015651 61 LLSASKGDTIKLKRALLALYHP---GNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLAT 137 (403)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLyhp---~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 137 (403)
+|.+++ ..+.+.++++.|... ...++| +|-.+.+...+.+.. ..+++.++.... . .+...|
T Consensus 2 ii~~~~-~~~~l~~~l~sl~~~~~~~~~iii-vdd~s~~~~~~~~~~---------~~~~~~~~~~~~--~---~g~~~a 65 (166)
T cd04186 2 IIVNYN-SLEYLKACLDSLLAQTYPDFEVIV-VDNASTDGSVELLRE---------LFPEVRLIRNGE--N---LGFGAG 65 (166)
T ss_pred EEEecC-CHHHHHHHHHHHHhccCCCeEEEE-EECCCCchHHHHHHH---------hCCCeEEEecCC--C---cChHHH
Confidence 567777 689999999999632 334545 555555555554443 123566654321 1 122333
Q ss_pred HHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHH
Q 015651 138 TLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAF 174 (403)
Q Consensus 138 tL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~f 174 (403)
--.+++. ...+|++.+.+.+++- .+.+....
T Consensus 66 ~n~~~~~----~~~~~i~~~D~D~~~~--~~~l~~~~ 96 (166)
T cd04186 66 NNQGIRE----AKGDYVLLLNPDTVVE--PGALLELL 96 (166)
T ss_pred hhHHHhh----CCCCEEEEECCCcEEC--ccHHHHHH
Confidence 3333333 3579999999988874 34444443
No 27
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=66.70 E-value=29 Score=29.01 Aligned_cols=100 Identities=17% Similarity=0.285 Sum_probs=61.1
Q ss_pred EEEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHH
Q 015651 60 YLLSASKGDTIKLKRALLALYH---PGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLA 136 (403)
Q Consensus 60 YLI~~hk~d~~~l~rLl~aLyh---p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 136 (403)
.+|.+++ ..+.|.++|..|-. +...++| +|-.+++...+.++++.+ ...+++++..... ...-.
T Consensus 2 vvip~~n-~~~~l~~~l~sl~~q~~~~~eiiv-vdd~s~d~~~~~~~~~~~------~~~~i~~i~~~~n-----~g~~~ 68 (169)
T PF00535_consen 2 VVIPTYN-EAEYLERTLESLLKQTDPDFEIIV-VDDGSTDETEEILEEYAE------SDPNIRYIRNPEN-----LGFSA 68 (169)
T ss_dssp EEEEESS--TTTHHHHHHHHHHHSGCEEEEEE-EECS-SSSHHHHHHHHHC------CSTTEEEEEHCCC-----SHHHH
T ss_pred EEEEeeC-CHHHHHHHHHHHhhccCCCEEEEE-eccccccccccccccccc------ccccccccccccc-----ccccc
Confidence 3567777 57888888887753 3444444 565566665666665442 2578888754322 23444
Q ss_pred HHHHHHHHHHhCCCCcEEEeccCCceeccc-hhhHHHHHcc
Q 015651 137 TTLHAIAMLLRCCKWDWFINLSASDYPLVT-QDDLIEAFSD 176 (403)
Q Consensus 137 AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t-~~~i~~~fs~ 176 (403)
+.-.+++.+ .-+|+..+.+.|++... .+++.+.+..
T Consensus 69 ~~n~~~~~a----~~~~i~~ld~D~~~~~~~l~~l~~~~~~ 105 (169)
T PF00535_consen 69 ARNRGIKHA----KGEYILFLDDDDIISPDWLEELVEALEK 105 (169)
T ss_dssp HHHHHHHH------SSEEEEEETTEEE-TTHHHHHHHHHHH
T ss_pred ccccccccc----ceeEEEEeCCCceEcHHHHHHHHHHHHh
Confidence 444444443 34699999999999887 7778887765
No 28
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=65.92 E-value=1.7e+02 Score=32.85 Aligned_cols=125 Identities=16% Similarity=0.146 Sum_probs=65.7
Q ss_pred CCCCCCCeEEEEEEecCCCHH----HHHHHHHHHc---CCCCEEEEEEcCCCCHH----HHHHHHHHhhccCccccccce
Q 015651 50 NNSSYPVTFAYLLSASKGDTI----KLKRALLALY---HPGNHYLIHMDREAPEK----EQREIAEFVANEPVFRMVNNV 118 (403)
Q Consensus 50 ~~~~~~~kiAYLI~~hk~d~~----~l~rLl~aLy---hp~n~y~IHlD~ka~~~----~~~~l~~~v~~~~~~~~~~NV 118 (403)
++.+..++.+.+|-+|+.|++ .++..++.+. ++++..++=+|-.+++. +++.+++..+..+ ..++|
T Consensus 118 ~~~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~---~~~~i 194 (691)
T PRK05454 118 PPPPPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELG---GEGRI 194 (691)
T ss_pred CCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcC---CCCcE
Confidence 345667899999999997765 4555555443 34455445555544443 2222332222111 23577
Q ss_pred EEeCCcceeeecCccHHHHHHHHHHHHHhC-C-CCcEEEeccCCceeccc-hhhHHHHHccCCCCcceEec
Q 015651 119 YIVGKPNLVTYRGPTMLATTLHAIAMLLRC-C-KWDWFINLSASDYPLVT-QDDLIEAFSDLPRDLNFIQH 186 (403)
Q Consensus 119 ~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~-~-~wdyfi~LSgsDyPL~t-~~~i~~~fs~~~~~~nFIe~ 186 (403)
++....... |.. .- + +..+++. + .+||++.|.+...|-.. ...+...+.. +.+.-.|+.
T Consensus 195 ~yr~R~~n~---~~K-aG---N-l~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~-dP~vGlVQt 256 (691)
T PRK05454 195 FYRRRRRNV---GRK-AG---N-IADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEA-NPRAGLIQT 256 (691)
T ss_pred EEEECCcCC---Ccc-HH---H-HHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhh-CcCEEEEeC
Confidence 775433222 221 11 1 1223333 3 39999999998886543 3455555543 334555653
No 29
>PRK10073 putative glycosyl transferase; Provisional
Probab=65.03 E-value=74 Score=31.78 Aligned_cols=93 Identities=9% Similarity=0.103 Sum_probs=59.7
Q ss_pred CCeEEEEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCc
Q 015651 55 PVTFAYLLSASKGDTIKLKRALLALYHP--GNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGP 132 (403)
Q Consensus 55 ~~kiAYLI~~hk~d~~~l~rLl~aLyhp--~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~ 132 (403)
.|.+..+|-+++ ..+.|.+.|+.|... .+.=+|=+|-.+++...+-++++.+ ..++|.++.+.+ +|.
T Consensus 5 ~p~vSVIIP~yN-~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~------~~~~i~vi~~~n----~G~ 73 (328)
T PRK10073 5 TPKLSIIIPLYN-AGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAE------NYPHVRLLHQAN----AGV 73 (328)
T ss_pred CCeEEEEEeccC-CHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHh------hCCCEEEEECCC----CCh
Confidence 467899999998 578999999999632 2333555666666555554554432 457888885432 443
Q ss_pred cHHHHHHHHHHHHHhCCCCcEEEeccCCceec
Q 015651 133 TMLATTLHAIAMLLRCCKWDWFINLSASDYPL 164 (403)
Q Consensus 133 S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL 164 (403)
+ .|-=.+ ++...=||+..|.+.|+..
T Consensus 74 ~--~arN~g----l~~a~g~yi~flD~DD~~~ 99 (328)
T PRK10073 74 S--VARNTG----LAVATGKYVAFPDADDVVY 99 (328)
T ss_pred H--HHHHHH----HHhCCCCEEEEECCCCccC
Confidence 3 222233 3333459999999999954
No 30
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=62.50 E-value=72 Score=27.66 Aligned_cols=107 Identities=12% Similarity=0.107 Sum_probs=59.5
Q ss_pred EEEecCCCHHHHHHHHHHHcCC----CCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHH
Q 015651 61 LLSASKGDTIKLKRALLALYHP----GNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLA 136 (403)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLyhp----~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 136 (403)
+|.+|+ ..+.+.++|+.+..- .+.=+|=+|-.+++...+.++.+.. ..+.++++.... ..+...
T Consensus 2 ii~~~n-~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~------~~~~~~~~~~~~-----n~G~~~ 69 (185)
T cd04179 2 VIPAYN-EEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAA------RVPRVRVIRLSR-----NFGKGA 69 (185)
T ss_pred eecccC-hHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHH------hCCCeEEEEccC-----CCCccH
Confidence 466777 678888888887632 2344566666666555555554332 344444442221 112334
Q ss_pred HHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHHcc-CCCCcceEe
Q 015651 137 TTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSD-LPRDLNFIQ 185 (403)
Q Consensus 137 AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~fs~-~~~~~nFIe 185 (403)
|.-.+++.+ .=||++.|.+.|.+ +.+.|...++. ...+.+++-
T Consensus 70 a~n~g~~~a----~gd~i~~lD~D~~~--~~~~l~~l~~~~~~~~~~~v~ 113 (185)
T cd04179 70 AVRAGFKAA----RGDIVVTMDADLQH--PPEDIPKLLEKLLEGGADVVI 113 (185)
T ss_pred HHHHHHHHh----cCCEEEEEeCCCCC--CHHHHHHHHHHHhccCCcEEE
Confidence 444444443 23999999999875 55666665553 233445543
No 31
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=61.57 E-value=66 Score=29.88 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=53.4
Q ss_pred CeEEEEEEecCCCHHHHHHHHHHHcC---CC-CEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecC
Q 015651 56 VTFAYLLSASKGDTIKLKRALLALYH---PG-NHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRG 131 (403)
Q Consensus 56 ~kiAYLI~~hk~d~~~l~rLl~aLyh---p~-n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg 131 (403)
|.+..+|.+++ ..+.+.++|+.+.. |. +.=+|-||-.+++...+.++.+.. + ...+|.++.. ....|
T Consensus 1 p~vsIiIp~~N-e~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~--~---~~~~i~~~~~---~~~~G 71 (241)
T cd06427 1 PVYTILVPLYK-EAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRL--P---SIFRVVVVPP---SQPRT 71 (241)
T ss_pred CeEEEEEecCC-cHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhcc--C---CCeeEEEecC---CCCCc
Confidence 46788999998 67899999999863 32 223456666666554444433210 0 1123444332 12233
Q ss_pred ccHHHHHHHHHHHHHhCCCCcEEEeccCCceec
Q 015651 132 PTMLATTLHAIAMLLRCCKWDWFINLSASDYPL 164 (403)
Q Consensus 132 ~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL 164 (403)
.+ . ++..+++...-||++.+.+.|.+-
T Consensus 72 ~~--~----a~n~g~~~a~gd~i~~~DaD~~~~ 98 (241)
T cd06427 72 KP--K----ACNYALAFARGEYVVIYDAEDAPD 98 (241)
T ss_pred hH--H----HHHHHHHhcCCCEEEEEcCCCCCC
Confidence 33 2 222344444579999999998854
No 32
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=60.58 E-value=62 Score=29.45 Aligned_cols=98 Identities=11% Similarity=0.105 Sum_probs=57.7
Q ss_pred EEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHHH
Q 015651 58 FAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLAT 137 (403)
Q Consensus 58 iAYLI~~hk~d~~~l~rLl~aLyhp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 137 (403)
+..+|.+|+...+.+.++|+.+......=+|=+|-.+++.....+... ...+.+.++... ++|. ..|
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~-------~~~~~~~v~~~~----~~g~--~~a 68 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQT-------VKYGGIFVITVP----HPGK--RRA 68 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhh-------ccCCcEEEEecC----CCCh--HHH
Confidence 567888998433999999999986423233445555555544433211 134556665432 3443 233
Q ss_pred HHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHH
Q 015651 138 TLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAF 174 (403)
Q Consensus 138 tL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~f 174 (403)
--.+++ ...-||++.|.+.+.|-.. .|...+
T Consensus 69 ~n~g~~----~a~~d~v~~lD~D~~~~~~--~l~~l~ 99 (235)
T cd06434 69 LAEGIR----HVTTDIVVLLDSDTVWPPN--ALPEML 99 (235)
T ss_pred HHHHHH----HhCCCEEEEECCCceeChh--HHHHHH
Confidence 333333 3357999999999998744 344433
No 33
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=59.85 E-value=60 Score=32.32 Aligned_cols=98 Identities=16% Similarity=0.121 Sum_probs=55.0
Q ss_pred CCCeEEEEEEecCCCH--H---------------HHHHHHHHHcCCCCEEEEEEcCCC---CHHHHHHHHHHhhccCccc
Q 015651 54 YPVTFAYLLSASKGDT--I---------------KLKRALLALYHPGNHYLIHMDREA---PEKEQREIAEFVANEPVFR 113 (403)
Q Consensus 54 ~~~kiAYLI~~hk~d~--~---------------~l~rLl~aLyhp~n~y~IHlD~ka---~~~~~~~l~~~v~~~~~~~ 113 (403)
....||||+.|..|.. . .-.+.+....|||-+++ --|.+. +.++-.++.+.+...|..+
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i-~p~~~~~~I~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEF-SPQGKGRLHSIETPRAIKKQIWIHPYES 94 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEE-ecCCCCCcCcHHHHHHHHHHHhhCccCC
Confidence 3577899998876531 1 11234445568885543 334332 3444445554443333211
Q ss_pred cccceEEeCCcceeeecCccHHHHHHHHHHHHHhCCC-CcEEEeccCC
Q 015651 114 MVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSAS 160 (403)
Q Consensus 114 ~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSgs 160 (403)
.-.|. +-|..-.|-...-+++-..|++++ .-+||++|.+
T Consensus 95 -~~kv~-------ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~ 134 (290)
T PRK05917 95 -PYKIY-------IIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAK 134 (290)
T ss_pred -CceEE-------EEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCC
Confidence 11233 445555666666677767778887 8888888854
No 34
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=58.23 E-value=81 Score=30.08 Aligned_cols=85 Identities=9% Similarity=0.041 Sum_probs=53.6
Q ss_pred cCCCHHHHHHHHHHHcCCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHHHHHHHHHH
Q 015651 65 SKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAM 144 (403)
Q Consensus 65 hk~d~~~l~rLl~aLyhp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~ 144 (403)
++.+.+.|+++|++|.. ++.-+|=||-.++.. +.++..+ ...++|+++...... | .-.|-=.+++.
T Consensus 3 yn~~~~~l~~~l~sl~~-q~~~iiVVDN~S~~~--~~~~~~~------~~~~~i~~i~~~~N~--G---~a~a~N~Gi~~ 68 (281)
T TIGR01556 3 FNPDLEHLGELITSLPK-QVDRIIAVDNSPHSD--QPLKNAR------LRGQKIALIHLGDNQ--G---IAGAQNQGLDA 68 (281)
T ss_pred cCccHHHHHHHHHHHHh-cCCEEEEEECcCCCc--HhHHHHh------ccCCCeEEEECCCCc--c---hHHHHHHHHHH
Confidence 34367899999999984 456678889876433 2232222 246789888543222 2 22233345555
Q ss_pred HHhCCCCcEEEeccCCceec
Q 015651 145 LLRCCKWDWFINLSASDYPL 164 (403)
Q Consensus 145 lL~~~~wdyfi~LSgsDyPL 164 (403)
|++. ..||++.|...+.|-
T Consensus 69 a~~~-~~d~i~~lD~D~~~~ 87 (281)
T TIGR01556 69 SFRR-GVQGVLLLDQDSRPG 87 (281)
T ss_pred HHHC-CCCEEEEECCCCCCC
Confidence 6542 489999999999986
No 35
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=57.62 E-value=1.5e+02 Score=27.39 Aligned_cols=106 Identities=12% Similarity=0.134 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEcCCC-CHHHHHHHHHHhhccCccccccceEEeCCcc--eeeecCc-----cHHHHHHH
Q 015651 69 TIKLKRALLALYHPGNHYLIHMDREA-PEKEQREIAEFVANEPVFRMVNNVYIVGKPN--LVTYRGP-----TMLATTLH 140 (403)
Q Consensus 69 ~~~l~rLl~aLyhp~n~y~IHlD~ka-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~--~V~wgg~-----S~V~AtL~ 140 (403)
...+=..++|+=|....++|..=|.. ...|...++ ..+||.+..-.. ...+... ..+++-+.
T Consensus 36 TAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~----------~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (178)
T PRK07414 36 TSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQ----------LGQNLDWVRCDLPRCLDTPHLDESEKKALQELWQ 105 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHH----------hCCCcEEEECCCCCeeeCCCcCHHHHHHHHHHHH
Confidence 57888889999999999999998875 345555443 346777653222 2222232 22333444
Q ss_pred HHHHHHhCCCCcEEEe---ccCCceeccchhhHHHHHccCCCCcceE
Q 015651 141 AIAMLLRCCKWDWFIN---LSASDYPLVTQDDLIEAFSDLPRDLNFI 184 (403)
Q Consensus 141 ~~~~lL~~~~wdyfi~---LSgsDyPL~t~~~i~~~fs~~~~~~nFI 184 (403)
-++.++..+.||-+|+ +.+-+|=|.+-+++.++++..|.+.+-|
T Consensus 106 ~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evI 152 (178)
T PRK07414 106 YTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVI 152 (178)
T ss_pred HHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEE
Confidence 4555666666999986 6777888999999999998777666654
No 36
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=57.59 E-value=1.1e+02 Score=26.57 Aligned_cols=96 Identities=13% Similarity=0.107 Sum_probs=50.8
Q ss_pred EEEecCCCHHHHHHHHHHHc------CCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccH
Q 015651 61 LLSASKGDTIKLKRALLALY------HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTM 134 (403)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLy------hp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~ 134 (403)
+|.+++ ..+.+.++|+.|. .+.-.+ |=+|-.+++.....++.+. ...+||.++... .+.| .
T Consensus 2 iIp~~n-~~~~l~~~l~sl~~~~~~~~~~~ei-ivvdd~s~d~t~~~~~~~~------~~~~~i~~i~~~--~n~G---~ 68 (181)
T cd04187 2 VVPVYN-EEENLPELYERLKAVLESLGYDYEI-IFVDDGSTDRTLEILRELA------ARDPRVKVIRLS--RNFG---Q 68 (181)
T ss_pred EEeecC-chhhHHHHHHHHHHHHHhcCCCeEE-EEEeCCCCccHHHHHHHHH------hhCCCEEEEEec--CCCC---c
Confidence 567777 6788888777653 122344 4466666655444444332 245688876422 1222 2
Q ss_pred HHHHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHHc
Q 015651 135 LATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFS 175 (403)
Q Consensus 135 V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~fs 175 (403)
..|.-.+++. ..-||++.+.+.+. + +.+.+...++
T Consensus 69 ~~a~n~g~~~----a~~d~i~~~D~D~~-~-~~~~l~~l~~ 103 (181)
T cd04187 69 QAALLAGLDH----ARGDAVITMDADLQ-D-PPELIPEMLA 103 (181)
T ss_pred HHHHHHHHHh----cCCCEEEEEeCCCC-C-CHHHHHHHHH
Confidence 2333333333 33488888887554 4 4445555443
No 37
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=57.45 E-value=1.7e+02 Score=32.63 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=64.4
Q ss_pred CCCCeEEEEEEecCCCHHHHHHHHHHH---cCCC-CEEEEEEcCCCCHH--------------HHHHHHHHhhccCcccc
Q 015651 53 SYPVTFAYLLSASKGDTIKLKRALLAL---YHPG-NHYLIHMDREAPEK--------------EQREIAEFVANEPVFRM 114 (403)
Q Consensus 53 ~~~~kiAYLI~~hk~d~~~l~rLl~aL---yhp~-n~y~IHlD~ka~~~--------------~~~~l~~~v~~~~~~~~ 114 (403)
+..|+++.+|-+|+.+.+.++++++++ +.|. +.=++=+|-.+++. .+.++++..+
T Consensus 128 ~~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~------- 200 (713)
T TIGR03030 128 EEWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCR------- 200 (713)
T ss_pred ccCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHH-------
Confidence 445789999999986666667777665 3453 33234445544321 2344444332
Q ss_pred ccceEEeCCcceeeecCccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccch-hhHHHHHccCCCCcceEe
Q 015651 115 VNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQ-DDLIEAFSDLPRDLNFIQ 185 (403)
Q Consensus 115 ~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~-~~i~~~fs~~~~~~nFIe 185 (403)
..+|+++.... +.++-. .++..+++...-||++.+.+.+.|-... .++..+|.. +.+..++.
T Consensus 201 ~~~v~yi~r~~--n~~~KA------gnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~-dp~v~~Vq 263 (713)
T TIGR03030 201 KLGVNYITRPR--NVHAKA------GNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVE-DPKLFLVQ 263 (713)
T ss_pred HcCcEEEECCC--CCCCCh------HHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHh-CCCEEEEe
Confidence 23677664332 222211 1233445555579999999999995432 344555543 33455553
No 38
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=56.64 E-value=80 Score=30.55 Aligned_cols=99 Identities=11% Similarity=0.051 Sum_probs=59.9
Q ss_pred EEEEecCCCH-HHHHHHHHHHcCC---C-CEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccH
Q 015651 60 YLLSASKGDT-IKLKRALLALYHP---G-NHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTM 134 (403)
Q Consensus 60 YLI~~hk~d~-~~l~rLl~aLyhp---~-n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~ 134 (403)
.+|.++. .. +.+.++|..|... . ..=+|-||-.|++.....+.+... ....++|+++..... .|++
T Consensus 2 IIIp~~N-~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~----~~~~~~v~vi~~~~n---~G~~- 72 (299)
T cd02510 2 VIIIFHN-EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYY----KKYLPKVKVLRLKKR---EGLI- 72 (299)
T ss_pred EEEEEec-CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHH----hhcCCcEEEEEcCCC---CCHH-
Confidence 3677777 56 9999999998632 1 124789998887765554433111 124578988853211 2333
Q ss_pred HHHHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHH
Q 015651 135 LATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAF 174 (403)
Q Consensus 135 V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~f 174 (403)
.|--.+++. ..-||++.|.+.+.+ +.+-|...+
T Consensus 73 -~a~N~g~~~----A~gd~i~fLD~D~~~--~~~wL~~ll 105 (299)
T cd02510 73 -RARIAGARA----ATGDVLVFLDSHCEV--NVGWLEPLL 105 (299)
T ss_pred -HHHHHHHHH----ccCCEEEEEeCCccc--CccHHHHHH
Confidence 333333333 336999999999997 455554444
No 39
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=54.92 E-value=1.8e+02 Score=27.12 Aligned_cols=106 Identities=15% Similarity=0.118 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEcCCC-CHHHHHHHHHHhhccCccccccceEEeCCcceeeecC------ccHHHHHHHH
Q 015651 69 TIKLKRALLALYHPGNHYLIHMDREA-PEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRG------PTMLATTLHA 141 (403)
Q Consensus 69 ~~~l~rLl~aLyhp~n~y~IHlD~ka-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg------~S~V~AtL~~ 141 (403)
...+-.-++|+-|.....+|..=+.. ...|...++ ..+||.+..-.....|.. ....+..+.-
T Consensus 37 t~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~----------~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~~~~~ 106 (191)
T PRK05986 37 TAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLE----------FGGGVEFHVMGTGFTWETQDRERDIAAAREGWEE 106 (191)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHh----------cCCCcEEEECCCCCcccCCCcHHHHHHHHHHHHH
Confidence 46777788899899999999998866 445655554 346787764333333432 1334445555
Q ss_pred HHHHHhCCCCcEEEe---ccCCceeccchhhHHHHHccCCCCcceE
Q 015651 142 IAMLLRCCKWDWFIN---LSASDYPLVTQDDLIEAFSDLPRDLNFI 184 (403)
Q Consensus 142 ~~~lL~~~~wdyfi~---LSgsDyPL~t~~~i~~~fs~~~~~~nFI 184 (403)
++.++..+.||-+|+ +-+-+|=|.+.+++++++.+.|.+.+-|
T Consensus 107 a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evV 152 (191)
T PRK05986 107 AKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVV 152 (191)
T ss_pred HHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEE
Confidence 666777667999996 6778888999999999998777666554
No 40
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=54.30 E-value=1.3e+02 Score=25.96 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=53.0
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHHH
Q 015651 61 LLSASKGDTIKLKRALLALYH---PGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLAT 137 (403)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLyh---p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 137 (403)
+|.++. ..+.++++|..+.. +... +|=+|-.+++...+.+....+.. ....+++.... .|+....+
T Consensus 2 vip~~n-~~~~l~~~l~sl~~q~~~~~e-iivvdd~s~d~t~~~~~~~~~~~----~~~~~~~~~~~-----~~~~~~~~ 70 (182)
T cd06420 2 IITTYN-RPEALELVLKSVLNQSILPFE-VIIADDGSTEETKELIEEFKSQF----PIPIKHVWQED-----EGFRKAKI 70 (182)
T ss_pred EEeecC-ChHHHHHHHHHHHhccCCCCE-EEEEeCCCchhHHHHHHHHHhhc----CCceEEEEcCC-----cchhHHHH
Confidence 577777 68999999999963 2233 34466666655444444332211 12334443221 12222222
Q ss_pred HHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHHc
Q 015651 138 TLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFS 175 (403)
Q Consensus 138 tL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~fs 175 (403)
-- .+++...-+|++.|.+.+.| +.+-|...+.
T Consensus 71 ~n----~g~~~a~g~~i~~lD~D~~~--~~~~l~~~~~ 102 (182)
T cd06420 71 RN----KAIAAAKGDYLIFIDGDCIP--HPDFIADHIE 102 (182)
T ss_pred HH----HHHHHhcCCEEEEEcCCccc--CHHHHHHHHH
Confidence 22 23333346999999999988 4455555443
No 41
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=53.49 E-value=79 Score=31.93 Aligned_cols=98 Identities=20% Similarity=0.154 Sum_probs=57.4
Q ss_pred CCeEEEEEEecCCCH-----H--------------------HHHHHHHHHcCCCCEEEEEEcCCC-CHHHHHHHHHHhhc
Q 015651 55 PVTFAYLLSASKGDT-----I--------------------KLKRALLALYHPGNHYLIHMDREA-PEKEQREIAEFVAN 108 (403)
Q Consensus 55 ~~kiAYLI~~hk~d~-----~--------------------~l~rLl~aLyhp~n~y~IHlD~ka-~~~~~~~l~~~v~~ 108 (403)
.+.||||+.|..|-+ . .-.|++.+-.|||-+++-..|.+. +.++-.++.+.+..
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 467788887776522 0 234555566688855543334332 45555555555544
Q ss_pred cCccccccceEEeCCcceeeecCccHHHHHHHHHHHHHhCCC-CcEEEeccCC
Q 015651 109 EPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSAS 160 (403)
Q Consensus 109 ~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSgs 160 (403)
.|..+ .-.|.+|. ..-.|-.+.-+++-..|++++ .-+||+++.+
T Consensus 102 ~~~~g-~~KV~iI~-------~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 102 HAQQG-GNKVVYIQ-------GAERLTEAAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred ccccC-CceEEEEe-------chhhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 44222 12344444 444566677777777788888 9999999864
No 42
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=51.48 E-value=99 Score=34.79 Aligned_cols=104 Identities=13% Similarity=0.013 Sum_probs=58.4
Q ss_pred CCCCCeEEEEEEecCCCHHHHHHHHH----HHcCCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCccee
Q 015651 52 SSYPVTFAYLLSASKGDTIKLKRALL----ALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLV 127 (403)
Q Consensus 52 ~~~~~kiAYLI~~hk~d~~~l~rLl~----aLyhp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V 127 (403)
.+.+++++.+|=+|+ ....+.++++ +++.|+-.+++=.|.. ++.-.+.+++. ...+|+++++....
T Consensus 59 ~~~~~~vsIlVPa~n-E~~vi~~~i~~ll~~ldYP~~eI~vi~~~n-D~~T~~~~~~l------~~~~p~~~~v~~~~-- 128 (727)
T PRK11234 59 KPDEKPLAIMVPAWN-ETGVIGNMAELAATTLDYENYHIFVGTYPN-DPATQADVDAV------CARFPNVHKVVCAR-- 128 (727)
T ss_pred cCCCCCEEEEEecCc-chhhHHHHHHHHHHhCCCCCeEEEEEecCC-ChhHHHHHHHH------HHHCCCcEEEEeCC--
Confidence 445688999999998 6766666666 4567876666655532 22222333332 23578887543211
Q ss_pred eecCccHHHHHHHHHHHHHhC----C-CCcEEEeccCCceeccc
Q 015651 128 TYRGPTMLATTLHAIAMLLRC----C-KWDWFINLSASDYPLVT 166 (403)
Q Consensus 128 ~wgg~S~V~AtL~~~~~lL~~----~-~wdyfi~LSgsDyPL~t 166 (403)
-|.-+-..|-=.+++.+.+. + .++.++.+-+.|.|=..
T Consensus 129 -~g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd 171 (727)
T PRK11234 129 -PGPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPM 171 (727)
T ss_pred -CCCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChh
Confidence 12223444444444444321 2 37888888888875433
No 43
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=50.44 E-value=1.3e+02 Score=27.13 Aligned_cols=95 Identities=13% Similarity=0.091 Sum_probs=54.0
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHHH
Q 015651 61 LLSASKGDTIKLKRALLALYH---PGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLAT 137 (403)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLyh---p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 137 (403)
+|.+++ ..+.|.++|+.|.. ++..=+|-+|-.+++...+.++++.+.. ...+++++.....-. .+-+.-.|
T Consensus 2 iIp~yn-~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~----~~~~~~~~~~~~~~~-~~~G~~~a 75 (219)
T cd06913 2 ILPVHN-GEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKL----EDSGVIVLVGSHNSP-SPKGVGYA 75 (219)
T ss_pred EEeecC-cHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhC----cccCeEEEEecccCC-CCccHHHH
Confidence 577787 68999999999964 3344567888877766555455443221 123555542111001 11222233
Q ss_pred HHHHHHHHHhCCCCcEEEeccCCceecc
Q 015651 138 TLHAIAMLLRCCKWDWFINLSASDYPLV 165 (403)
Q Consensus 138 tL~~~~~lL~~~~wdyfi~LSgsDyPL~ 165 (403)
.-.++ +...-||++.|.+.|.+.-
T Consensus 76 ~N~g~----~~a~gd~i~~lD~D~~~~~ 99 (219)
T cd06913 76 KNQAI----AQSSGRYLCFLDSDDVMMP 99 (219)
T ss_pred HHHHH----HhcCCCEEEEECCCccCCh
Confidence 32333 3334699999999998544
No 44
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=49.00 E-value=1.3e+02 Score=29.96 Aligned_cols=25 Identities=20% Similarity=0.091 Sum_probs=14.3
Q ss_pred CCeEEEEEEecCCCHHHHHHHHHHH
Q 015651 55 PVTFAYLLSASKGDTIKLKRALLAL 79 (403)
Q Consensus 55 ~~kiAYLI~~hk~d~~~l~rLl~aL 79 (403)
.+.+|||+.|..|.......+.++|
T Consensus 22 rl~hAyLf~G~~G~~~~A~~~A~~l 46 (290)
T PRK07276 22 RLNHAYLFSGDFASFEMALFLAQSL 46 (290)
T ss_pred CcceeeeeeCCccHHHHHHHHHHHH
Confidence 4677888887765433333344444
No 45
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=48.75 E-value=1.6e+02 Score=29.01 Aligned_cols=98 Identities=12% Similarity=0.274 Sum_probs=54.1
Q ss_pred CCCeEEEEEEecCCCH--HHHHHHH-HHH--------cCCCCEEEEEEcC------C-CCHHHHHHHHHHhhccCccccc
Q 015651 54 YPVTFAYLLSASKGDT--IKLKRAL-LAL--------YHPGNHYLIHMDR------E-APEKEQREIAEFVANEPVFRMV 115 (403)
Q Consensus 54 ~~~kiAYLI~~hk~d~--~~l~rLl-~aL--------yhp~n~y~IHlD~------k-a~~~~~~~l~~~v~~~~~~~~~ 115 (403)
....+|||+.|..++. ..+..++ +.+ .||+-+ +|--+. + -+.++-.++...+...| ..
T Consensus 12 ~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~-~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p---~~ 87 (263)
T PRK06581 12 NKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYH-FIARETSATSNAKNISIEQIRKLQDFLSKTS---AI 87 (263)
T ss_pred CcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEE-EEeccccccccCCcccHHHHHHHHHHHhhCc---cc
Confidence 4578899999876321 2222222 222 467633 343232 1 13444455655554434 22
Q ss_pred cceEEeCCcceeeecCccHHHHHHHHHHHHHhCCC-CcEEEeccCC
Q 015651 116 NNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSAS 160 (403)
Q Consensus 116 ~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSgs 160 (403)
++.+| -+-++.-.|-.+.-+++--.|++++ .-+|++++.+
T Consensus 88 g~~KV-----iII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~ 128 (263)
T PRK06581 88 SGYKV-----AIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSR 128 (263)
T ss_pred CCcEE-----EEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCC
Confidence 33322 2455555666666777767778888 8999998865
No 46
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=47.38 E-value=92 Score=28.56 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEcCC-CCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCc------cHHHHHHHH
Q 015651 69 TIKLKRALLALYHPGNHYLIHMDRE-APEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGP------TMLATTLHA 141 (403)
Q Consensus 69 ~~~l~rLl~aLyhp~n~y~IHlD~k-a~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~------S~V~AtL~~ 141 (403)
...+=-.++|+=|...+++|..=|. ....|...++ ..+||.+..-.....|..- ..++.-+.-
T Consensus 18 TAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~----------~l~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~ 87 (172)
T PF02572_consen 18 TAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALK----------KLPNVEIERFGKGFVWRMNEEEEDRAAAREGLEE 87 (172)
T ss_dssp HHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHG----------GGT--EEEE--TT----GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHH----------hCCeEEEEEcCCcccccCCCcHHHHHHHHHHHHH
Confidence 4667778999999999999999887 3344544433 5677777643334455433 233344444
Q ss_pred HHHHHhCCCCcEEEe---ccCCceeccchhhHHHHHccCCCCcceE
Q 015651 142 IAMLLRCCKWDWFIN---LSASDYPLVTQDDLIEAFSDLPRDLNFI 184 (403)
Q Consensus 142 ~~~lL~~~~wdyfi~---LSgsDyPL~t~~~i~~~fs~~~~~~nFI 184 (403)
++.++..+.||-+|+ +-+-+|=|.+.+++.+++...|...+-|
T Consensus 88 a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evV 133 (172)
T PF02572_consen 88 AKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVV 133 (172)
T ss_dssp HHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEE
T ss_pred HHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEE
Confidence 455555556999996 6667778899999999998666655544
No 47
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=47.22 E-value=1.7e+02 Score=26.46 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=57.8
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHHHHHH
Q 015651 61 LLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLH 140 (403)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLyhp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~ 140 (403)
+|.++++..+.+.++|+.+... +.-+|=+|..+++.... .... ..+++.++.... + .| ...|-=.
T Consensus 2 vI~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~-~~~~--------~~~~i~~i~~~~--n-~G--~~~a~N~ 66 (237)
T cd02526 2 VVVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIEL-RLRL--------NSEKIELIHLGE--N-LG--IAKALNI 66 (237)
T ss_pred EEEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHH-Hhhc--------cCCcEEEEECCC--c-ee--hHHhhhH
Confidence 5677874449999999999865 44456688766544322 2110 246777774322 2 22 2233333
Q ss_pred HHHHHHhCCCCcEEEeccCCceeccchhhHHHHH
Q 015651 141 AIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAF 174 (403)
Q Consensus 141 ~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~f 174 (403)
+++.+.. ...||++.|.+.+++ .++.|...+
T Consensus 67 g~~~a~~-~~~d~v~~lD~D~~~--~~~~l~~l~ 97 (237)
T cd02526 67 GIKAALE-NGADYVLLFDQDSVP--PPDMVEKLL 97 (237)
T ss_pred HHHHHHh-CCCCEEEEECCCCCc--CHhHHHHHH
Confidence 3443332 148999999999996 477776653
No 48
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=45.57 E-value=1.5e+02 Score=29.89 Aligned_cols=98 Identities=15% Similarity=0.081 Sum_probs=58.1
Q ss_pred CCCeEEEEEEecCCCHH-------------------------HHHHHHHHHcCCCCEEEEEEcCC---CCHHHHHHHHHH
Q 015651 54 YPVTFAYLLSASKGDTI-------------------------KLKRALLALYHPGNHYLIHMDRE---APEKEQREIAEF 105 (403)
Q Consensus 54 ~~~kiAYLI~~hk~d~~-------------------------~l~rLl~aLyhp~n~y~IHlD~k---a~~~~~~~l~~~ 105 (403)
..+.||||+.|-.|-+. .-.|++.+-.|||-++ |--+.+ -+.++-.++.+.
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~-i~p~~~~~~I~idqiR~l~~~ 99 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYT-LTPEKGKSSLGVDAVREVTEK 99 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEE-EecccccccCCHHHHHHHHHH
Confidence 35778888887766321 2235566677898554 333332 234454555555
Q ss_pred hhccCccccccceEEeCCcceeeecCccHHHHHHHHHHHHHhCCC-CcEEEeccCC
Q 015651 106 VANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSAS 160 (403)
Q Consensus 106 v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSgs 160 (403)
+...|..+ .-.|.+| |.--.|-.+.-+++-..|++++ .-+||+++.+
T Consensus 100 ~~~~~~~g-~~kV~iI-------~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 100 LYEHARLG-GAKVVWL-------PDAALLTDAAANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred HhhccccC-CceEEEE-------cchHhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 54333111 1234444 4445666777777777888888 9999999965
No 49
>PF07747 MTH865: MTH865-like family; InterPro: IPR024093 This entry represents a group of uncharacterised hypothetical proteins from archaea, including the 8.4 kDa protein MTH865 from Methanobacterium thermoautotrophicum. The NMR structure of MTH865 reveals an EF-Hand-like fold consisting of four helices in two hairpins [].; PDB: 1IIO_A.
Probab=45.49 E-value=10 Score=30.14 Aligned_cols=19 Identities=21% Similarity=0.602 Sum_probs=15.7
Q ss_pred ccCCceeccchhhHHHHHc
Q 015651 157 LSASDYPLVTQDDLIEAFS 175 (403)
Q Consensus 157 LSgsDyPL~t~~~i~~~fs 175 (403)
+.|.|||++|+.||...|=
T Consensus 11 ~~~a~FPI~s~~eL~~alP 29 (75)
T PF07747_consen 11 FKGADFPIKSPMELLPALP 29 (75)
T ss_dssp HTTSSSTTBHHHHHHHH-T
T ss_pred HhcCCCCCCCHHHHHHhCC
Confidence 4588999999999999873
No 50
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=45.03 E-value=99 Score=30.35 Aligned_cols=36 Identities=8% Similarity=0.012 Sum_probs=26.5
Q ss_pred ceeeecCccHHHHHHHHHHHHHhCCC-CcEEEeccCC
Q 015651 125 NLVTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSAS 160 (403)
Q Consensus 125 ~~V~wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSgs 160 (403)
+.+-|..-.|-.+.-+++--.|++++ .-+||++|.+
T Consensus 91 V~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~ 127 (261)
T PRK05818 91 IYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRN 127 (261)
T ss_pred EEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECC
Confidence 33566666777777777777888887 8899998853
No 51
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=41.40 E-value=2.5e+02 Score=24.72 Aligned_cols=99 Identities=16% Similarity=0.202 Sum_probs=56.6
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCC--CEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHHH
Q 015651 60 YLLSASKGDTIKLKRALLALYHPG--NHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLAT 137 (403)
Q Consensus 60 YLI~~hk~d~~~l~rLl~aLyhp~--n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 137 (403)
.+|-+++ ..+.|.+.|+.+.+.. ..=+|=+|-.+++...+.++.+.+..| .++.++... ++.+...+
T Consensus 2 IvIp~yn-~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~-----~~~~~~~~~-----~~~G~~~~ 70 (214)
T cd04196 2 VLMATYN-GEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDP-----FIIILIRNG-----KNLGVARN 70 (214)
T ss_pred EEEEecC-cHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCC-----ceEEEEeCC-----CCccHHHH
Confidence 4677777 6788999998886422 233455677676665555554432211 234443221 33344444
Q ss_pred HHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHHc
Q 015651 138 TLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFS 175 (403)
Q Consensus 138 tL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~fs 175 (403)
.-.+ ++....||++.|.+.|... .+.|.+.+.
T Consensus 71 ~n~g----~~~~~g~~v~~ld~Dd~~~--~~~l~~~~~ 102 (214)
T cd04196 71 FESL----LQAADGDYVFFCDQDDIWL--PDKLERLLK 102 (214)
T ss_pred HHHH----HHhCCCCEEEEECCCcccC--hhHHHHHHH
Confidence 3333 3444589999999998875 444555443
No 52
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=41.15 E-value=2.5e+02 Score=24.75 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=50.9
Q ss_pred EEEecCCCHHHHHHHHHHHcCCC--CEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHHHH
Q 015651 61 LLSASKGDTIKLKRALLALYHPG--NHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATT 138 (403)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLyhp~--n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~At 138 (403)
+|.+++ ..+.+.++|+.|.... ..=+|=+|-.+++.-.+.+.+.. ...++.++... -+-|....+..
T Consensus 2 iI~~~n-~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~-------~~~~i~~~~~~--~n~g~~~~~n~- 70 (202)
T cd04185 2 VVVTYN-RLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLG-------DLDNIVYLRLP--ENLGGAGGFYE- 70 (202)
T ss_pred EEEeeC-CHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhc-------CCCceEEEECc--cccchhhHHHH-
Confidence 577777 6889999999996321 22246667777666555444321 11225555322 22233222222
Q ss_pred HHHHHHHHhCCCCcEEEeccCCceec
Q 015651 139 LHAIAMLLRCCKWDWFINLSASDYPL 164 (403)
Q Consensus 139 L~~~~~lL~~~~wdyfi~LSgsDyPL 164 (403)
++..+. ....||++.+.+.+.+.
T Consensus 71 --~~~~a~-~~~~d~v~~ld~D~~~~ 93 (202)
T cd04185 71 --GVRRAY-ELGYDWIWLMDDDAIPD 93 (202)
T ss_pred --HHHHHh-ccCCCEEEEeCCCCCcC
Confidence 233333 33489999999888874
No 53
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=41.12 E-value=2e+02 Score=25.73 Aligned_cols=97 Identities=12% Similarity=0.186 Sum_probs=54.2
Q ss_pred EEEecCCCHHHHHHHHHHHcCC---CCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHHH
Q 015651 61 LLSASKGDTIKLKRALLALYHP---GNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLAT 137 (403)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLyhp---~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 137 (403)
+|.+++ ..+.|.++|+.+... .+.=+|=||-.+++.-.+.++.+.+ ..++|.++... .-+|.+ .|
T Consensus 2 iIp~yn-~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~------~~~~i~~~~~~---~n~G~~--~a 69 (224)
T cd06442 2 IIPTYN-ERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAK------EYPRVRLIVRP---GKRGLG--SA 69 (224)
T ss_pred eEeccc-hhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHH------hCCceEEEecC---CCCChH--HH
Confidence 567777 678899988888742 2333466676665554443443322 34566665321 224443 23
Q ss_pred HHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHHc
Q 015651 138 TLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFS 175 (403)
Q Consensus 138 tL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~fs 175 (403)
--.+++. ..-||++.|.+.|.+ +.+.|...+.
T Consensus 70 ~n~g~~~----a~gd~i~~lD~D~~~--~~~~l~~l~~ 101 (224)
T cd06442 70 YIEGFKA----ARGDVIVVMDADLSH--PPEYIPELLE 101 (224)
T ss_pred HHHHHHH----cCCCEEEEEECCCCC--CHHHHHHHHH
Confidence 3334443 334899999988875 4554544443
No 54
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=40.94 E-value=1.3e+02 Score=29.98 Aligned_cols=92 Identities=17% Similarity=0.347 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHc-CCCCEEEE-EEcC---CC--CHHHHHHHHHHhhccCccccccceEEeCCcceeeecCcc-HHHHHH
Q 015651 68 DTIKLKRALLALY-HPGNHYLI-HMDR---EA--PEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPT-MLATTL 139 (403)
Q Consensus 68 d~~~l~rLl~aLy-hp~n~y~I-HlD~---ka--~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S-~V~AtL 139 (403)
+++||..++..+. .|+..++| |.-+ +. ....++.|.... ..+||.+== ...+..++.+ -++...
T Consensus 145 ~~~ql~~~i~l~~~~Pd~~~VldH~G~p~~~~~~~~~w~~~m~~la-------~~pNv~~Kl-SG~~~~~~~~w~~~~v~ 216 (279)
T COG3618 145 DPHQLPDLIPLALKAPDVNFVLDHCGRPDIKINLEDPWKAALARLA-------RRPNVWAKL-SGVYAYSDESWTVEDVR 216 (279)
T ss_pred ChhhhHHHHHHHhhCCCCCEEeccCCCCCccccccCHHHHHHHHHH-------hCCCeEEEE-eeecccccCCCCHHHHH
Confidence 5677777776654 67655544 4332 21 234566776543 578887622 2335566666 566666
Q ss_pred HHHHHHHhCCCCcEEEeccCCceeccchhh
Q 015651 140 HAIAMLLRCCKWDWFINLSASDYPLVTQDD 169 (403)
Q Consensus 140 ~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~ 169 (403)
--++.+++...||.+|- |||||..+...
T Consensus 217 p~~e~~i~~fg~dR~vf--GSdwPv~~l~~ 244 (279)
T COG3618 217 PYVEELIELFGWDRFVF--GSDWPVTSLES 244 (279)
T ss_pred HHHHHHHHhcCccceEe--cCCCCcccccC
Confidence 66777777777998887 99999987543
No 55
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=39.25 E-value=2.2e+02 Score=25.36 Aligned_cols=91 Identities=15% Similarity=0.191 Sum_probs=52.8
Q ss_pred EEEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHH
Q 015651 59 AYLLSASKGDTIKLKRALLALYHP--GNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLA 136 (403)
Q Consensus 59 AYLI~~hk~d~~~l~rLl~aLyhp--~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 136 (403)
..+|.+++ ..+.+.++|+.|... .+.-+|=+|-.+.+.....++ . .+++++... .|.+
T Consensus 2 svii~~~n-~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~----------~-~~~~~~~~~-----~g~~--- 61 (221)
T cd02522 2 SIIIPTLN-EAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIAR----------S-AGVVVISSP-----KGRA--- 61 (221)
T ss_pred EEEEEccC-cHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHh----------c-CCeEEEeCC-----cCHH---
Confidence 45677777 677888888887632 234456667776554333222 1 456665432 2332
Q ss_pred HHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHH
Q 015651 137 TTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAF 174 (403)
Q Consensus 137 AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~f 174 (403)
..+ ..+++...-+|++.+.+.++| +.+.+...+
T Consensus 62 ~a~---n~g~~~a~~~~i~~~D~D~~~--~~~~l~~l~ 94 (221)
T cd02522 62 RQM---NAGAAAARGDWLLFLHADTRL--PPDWDAAII 94 (221)
T ss_pred HHH---HHHHHhccCCEEEEEcCCCCC--ChhHHHHHH
Confidence 122 223333346999999999988 456665544
No 56
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=38.94 E-value=2.7e+02 Score=24.43 Aligned_cols=90 Identities=20% Similarity=0.308 Sum_probs=47.5
Q ss_pred EEEEecCCC-HHHHHHHHHHHcC---CCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHH
Q 015651 60 YLLSASKGD-TIKLKRALLALYH---PGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTML 135 (403)
Q Consensus 60 YLI~~hk~d-~~~l~rLl~aLyh---p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V 135 (403)
.+|-++.++ ++.+.++|+.+.. +...++|=.|..+++...+-++.+.+ .++ +.++..... .|. .
T Consensus 2 viip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~------~~~-i~~i~~~~n---~G~--~ 69 (201)
T cd04195 2 VLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKR------KLP-LKVVPLEKN---RGL--G 69 (201)
T ss_pred EEEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHh------cCC-eEEEEcCcc---ccH--H
Confidence 356666533 4789999999964 33344343344334443333333321 233 666542211 232 2
Q ss_pred HHHHHHHHHHHhCCCCcEEEeccCCceecc
Q 015651 136 ATTLHAIAMLLRCCKWDWFINLSASDYPLV 165 (403)
Q Consensus 136 ~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~ 165 (403)
.|--. +++...-||++.|.+.|++..
T Consensus 70 ~a~N~----g~~~a~gd~i~~lD~Dd~~~~ 95 (201)
T cd04195 70 KALNE----GLKHCTYDWVARMDTDDISLP 95 (201)
T ss_pred HHHHH----HHHhcCCCEEEEeCCccccCc
Confidence 22222 333345799999999998653
No 57
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=37.56 E-value=2.5e+02 Score=23.66 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHc--CCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEe
Q 015651 69 TIKLKRALLALY--HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIV 121 (403)
Q Consensus 69 ~~~l~rLl~aLy--hp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv 121 (403)
.+.+...++++. +|+..++|..|++++-+.-..+-+.++.. .+.+|.++
T Consensus 69 ~~~L~~~l~~~~~~~~~~~v~I~aD~~~~~~~vv~v~d~~~~a----G~~~v~l~ 119 (122)
T TIGR02803 69 RETLGTALDALTEGDKDTTIFFRADKTVDYGDLMKVMNLLRQA----GYLKIGLV 119 (122)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHc----CCCEEEEE
Confidence 467777777664 68888999999999888766666555432 24556554
No 58
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=37.40 E-value=2.5e+02 Score=28.11 Aligned_cols=97 Identities=23% Similarity=0.282 Sum_probs=50.7
Q ss_pred CCCeEEEEEEecCCCH--HHHHHHHHHHc-----------------------CCCCEEEEEEcCC-CCHHHHHHHHHHhh
Q 015651 54 YPVTFAYLLSASKGDT--IKLKRALLALY-----------------------HPGNHYLIHMDRE-APEKEQREIAEFVA 107 (403)
Q Consensus 54 ~~~kiAYLI~~hk~d~--~~l~rLl~aLy-----------------------hp~n~y~IHlD~k-a~~~~~~~l~~~v~ 107 (403)
..+.+|||+.|..|-. .....+.+++. ||+-. ++-.|.+ .+.++-.++.+.+.
T Consensus 25 ~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~-~i~~~~~~i~id~ir~l~~~~~ 103 (329)
T PRK08058 25 NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVH-LVAPDGQSIKKDQIRYLKEEFS 103 (329)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEE-EeccccccCCHHHHHHHHHHHh
Confidence 3467899998887642 33344445553 56533 3444433 23333333333333
Q ss_pred ccCccccccceEEeCCcceeeecCccHHHHHHHHHHHHHhCCC-CcEEEeccC
Q 015651 108 NEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSA 159 (403)
Q Consensus 108 ~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSg 159 (403)
..|... ...|.+|.+. -.|-....+++-..|++++ .-+||+++.
T Consensus 104 ~~~~~~-~~kvviI~~a-------~~~~~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 104 KSGVES-NKKVYIIEHA-------DKMTASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred hCCccc-CceEEEeehH-------hhhCHHHHHHHHHHhcCCCCCceEEEEeC
Confidence 233222 2356666543 2333445556666677776 888888775
No 59
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=36.50 E-value=3.7e+02 Score=25.33 Aligned_cols=106 Identities=19% Similarity=0.166 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEcCCC-CHHHHHHHHHHhhccCccccccceEEeCCcceeeecCcc------HHHHHHHH
Q 015651 69 TIKLKRALLALYHPGNHYLIHMDREA-PEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPT------MLATTLHA 141 (403)
Q Consensus 69 ~~~l~rLl~aLyhp~n~y~IHlD~ka-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S------~V~AtL~~ 141 (403)
...|=-.++++=|.-..++|.+=+-. ...|+..+..+ -.+|.+..-..-++|.... ..++-+.-
T Consensus 43 TAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~---------~~~v~~~~~~~g~tw~~~~~~~d~~aa~~~w~~ 113 (198)
T COG2109 43 TAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKF---------GLGVEFHGMGEGFTWETQDREADIAAAKAGWEH 113 (198)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhh---------ccceeEEecCCceeCCCcCcHHHHHHHHHHHHH
Confidence 46777888999999999999887766 55666655421 2567776656678888764 44445555
Q ss_pred HHHHHhCCCCcEEEeccCC----ceeccchhhHHHHHccCCCCcceE
Q 015651 142 IAMLLRCCKWDWFINLSAS----DYPLVTQDDLIEAFSDLPRDLNFI 184 (403)
Q Consensus 142 ~~~lL~~~~wdyfi~LSgs----DyPL~t~~~i~~~fs~~~~~~nFI 184 (403)
++.++..+.||-+|+ ..- .|=+.+.+|+.+.|...|.....|
T Consensus 114 a~~~l~~~~ydlviL-DEl~~al~~g~l~~eeV~~~l~~kP~~~~vI 159 (198)
T COG2109 114 AKEALADGKYDLVIL-DELNYALRYGLLPLEEVVALLKARPEHTHVI 159 (198)
T ss_pred HHHHHhCCCCCEEEE-ehhhHHHHcCCCCHHHHHHHHhcCCCCcEEE
Confidence 666777777997764 444 455579999999998777766554
No 60
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=36.44 E-value=4.6e+02 Score=26.39 Aligned_cols=96 Identities=17% Similarity=0.124 Sum_probs=60.6
Q ss_pred CCeEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccc-cceEEeCCcceeeec
Q 015651 55 PVTFAYLLSASKGDTIKLKRALLALY---HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMV-NNVYIVGKPNLVTYR 130 (403)
Q Consensus 55 ~~kiAYLI~~hk~d~~~l~rLl~aLy---hp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~-~NV~vv~~~~~V~wg 130 (403)
.|++..+|=+++.+.+-+++++.++. .|+..++|=.| .+++...+.+++... ++ +++.++..
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d-~~~d~~~~~~~~~~~------~~~~~~~~~~~------- 118 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDD-GSTDETYEILEELGA------EYGPNFRVIYP------- 118 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECC-CCChhHHHHHHHHHh------hcCcceEEEec-------
Confidence 58999999999966669999998886 34445555555 444555555554332 33 46666510
Q ss_pred CccHHHHHHHHHHHHHhCCCCcEEEeccCCceecc
Q 015651 131 GPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLV 165 (403)
Q Consensus 131 g~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~ 165 (403)
.....+-..++..+++....|+++.+-+...|=+
T Consensus 119 -~~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~ 152 (439)
T COG1215 119 -EKKNGGKAGALNNGLKRAKGDVVVILDADTVPEP 152 (439)
T ss_pred -cccCccchHHHHHHHhhcCCCEEEEEcCCCCCCh
Confidence 1222333445555666666899998888777654
No 61
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=35.86 E-value=2.9e+02 Score=23.81 Aligned_cols=87 Identities=13% Similarity=0.124 Sum_probs=50.2
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCC--CEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHHH
Q 015651 60 YLLSASKGDTIKLKRALLALYHPG--NHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLAT 137 (403)
Q Consensus 60 YLI~~hk~d~~~l~rLl~aLyhp~--n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 137 (403)
.+|.+++ ..+.+.++|..|.... +.=+|=+|-.+++.....++++.. ..+.++.. ..+| ...|
T Consensus 2 ivi~~~n-~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~--------~~~~~~~~----~~~g--~~~a 66 (202)
T cd06433 2 IITPTYN-QAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYED--------KITYWISE----PDKG--IYDA 66 (202)
T ss_pred EEEeccc-hHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHh--------hcEEEEec----CCcC--HHHH
Confidence 3577787 6788999998885321 222456677776665554443211 12333332 2233 3333
Q ss_pred HHHHHHHHHhCCCCcEEEeccCCceecc
Q 015651 138 TLHAIAMLLRCCKWDWFINLSASDYPLV 165 (403)
Q Consensus 138 tL~~~~~lL~~~~wdyfi~LSgsDyPL~ 165 (403)
.-. +++...-||++.|.+.|.+..
T Consensus 67 ~n~----~~~~a~~~~v~~ld~D~~~~~ 90 (202)
T cd06433 67 MNK----GIALATGDIIGFLNSDDTLLP 90 (202)
T ss_pred HHH----HHHHcCCCEEEEeCCCcccCc
Confidence 333 334445799999999998764
No 62
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=35.49 E-value=2.7e+02 Score=26.21 Aligned_cols=112 Identities=20% Similarity=0.143 Sum_probs=64.3
Q ss_pred EEEEEEecCCCHHHHHHHHHHH---cCCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccH
Q 015651 58 FAYLLSASKGDTIKLKRALLAL---YHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTM 134 (403)
Q Consensus 58 iAYLI~~hk~d~~~l~rLl~aL---yhp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~ 134 (403)
.-++++|++|-...+.||++++ |.|+.++ +--+.+.+ .++.+.+.... ......|..+...| .|.=.=.|-
T Consensus 40 ~~lVvlGSGGHT~EMlrLl~~l~~~y~~r~yI-~a~tD~mS---~~k~~~F~~~~-a~~~a~~~~ipRsR-eVgQS~ltS 113 (211)
T KOG3339|consen 40 STLVVLGSGGHTGEMLRLLEALQDLYSPRSYI-AADTDEMS---EQKARSFELSL-AHCKAKNYEIPRSR-EVGQSWLTS 113 (211)
T ss_pred eEEEEEcCCCcHHHHHHHHHHHHhhcCceEEE-EecCchhh---HHHHHhhhccc-cccchhheecchhh-hhhhhhhhh
Confidence 5788999998888999999888 4565443 22222222 22233322211 11223455544333 354444567
Q ss_pred HHHHHHHHHHHHhCC---CCcEEEecc-CCceeccchhhHHHHHc
Q 015651 135 LATTLHAIAMLLRCC---KWDWFINLS-ASDYPLVTQDDLIEAFS 175 (403)
Q Consensus 135 V~AtL~~~~~lL~~~---~wdyfi~LS-gsDyPL~t~~~i~~~fs 175 (403)
|-.|+.++...+..- .-|-+...- |.|.|+-=-..|.+++.
T Consensus 114 v~Tti~all~s~~lv~RirPdlil~NGPGTCv~i~~~a~l~~iL~ 158 (211)
T KOG3339|consen 114 VFTTIWALLQSFVLVWRIRPDLILCNGPGTCVPICLSAYLMEILG 158 (211)
T ss_pred HHHHHHHHHHHheEEEecCCCEEEECCCCcEeHHHHHHHHHHHhC
Confidence 777777776655321 144444444 79999988888877774
No 63
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=35.17 E-value=3.1e+02 Score=24.07 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHc--CCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeC
Q 015651 68 DTIKLKRALLALY--HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVG 122 (403)
Q Consensus 68 d~~~l~rLl~aLy--hp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~ 122 (403)
+.+.+...|.++. .++..++|+-|++++-+...++-+.++.. -+.+|.++.
T Consensus 80 ~~~~l~~~l~~~~~~~~~~~v~i~aD~~v~y~~vv~vm~~l~~a----G~~~v~L~t 132 (137)
T COG0848 80 SLEELEAALAALAKGKKNPRVVIRADKNVKYGTVVKVMDLLKEA----GFKKVGLVT 132 (137)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHc----CCceEEEEe
Confidence 4677887787777 44447899999999988877777766533 367777764
No 64
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=34.16 E-value=3.6e+02 Score=26.47 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=54.3
Q ss_pred CCCeEEEEEEecCCC--HHHHHHHHHHH-------cCCCCEEEEEEcCCC-CHHHHHHHHHHhhccCccccccceEEeCC
Q 015651 54 YPVTFAYLLSASKGD--TIKLKRALLAL-------YHPGNHYLIHMDREA-PEKEQREIAEFVANEPVFRMVNNVYIVGK 123 (403)
Q Consensus 54 ~~~kiAYLI~~hk~d--~~~l~rLl~aL-------yhp~n~y~IHlD~ka-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~ 123 (403)
....+|||+.|..|- ......+.++| .||+...+...|.+. +.++-.++...+...|... ...|.+|.+
T Consensus 23 ~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~-~~kv~iI~~ 101 (313)
T PRK05564 23 NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEG-DKKVIIIYN 101 (313)
T ss_pred CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccC-CceEEEEec
Confidence 457789999998764 23444555555 255544444445443 3333333444443445332 345666654
Q ss_pred cceeeecCccHHHHHHHHHHHHHhCCC-CcEEEeccC
Q 015651 124 PNLVTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSA 159 (403)
Q Consensus 124 ~~~V~wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSg 159 (403)
. -.|-.+.-+++-..|++++ ..+||+++.
T Consensus 102 a-------d~m~~~a~naLLK~LEepp~~t~~il~~~ 131 (313)
T PRK05564 102 S-------EKMTEQAQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred h-------hhcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 3 2333444555556677777 888998873
No 65
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.70 E-value=22 Score=28.25 Aligned_cols=18 Identities=22% Similarity=0.691 Sum_probs=15.9
Q ss_pred cCCceeccchhhHHHHHc
Q 015651 158 SASDYPLVTQDDLIEAFS 175 (403)
Q Consensus 158 SgsDyPL~t~~~i~~~fs 175 (403)
-|.|||++++.+|...|-
T Consensus 17 k~a~fPInn~~eL~~ALP 34 (80)
T COG4746 17 KGADFPINNPEELVAALP 34 (80)
T ss_pred ccCCCCCCCHHHHHHhcc
Confidence 389999999999999874
No 66
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=31.97 E-value=31 Score=29.82 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=9.7
Q ss_pred chhHHHHHHHHHHHHHHH
Q 015651 5 VFVTLFMLTSVFLCFVYI 22 (403)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (403)
||++.+++.++++++|++
T Consensus 1 RW~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFL 18 (130)
T ss_pred CeeeHHHHHHHHHHHHHH
Confidence 687665555444444433
No 67
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=31.93 E-value=2.9e+02 Score=22.65 Aligned_cols=95 Identities=17% Similarity=0.219 Sum_probs=51.2
Q ss_pred EEEecCCCHHHHHHHHHHHcCC---CCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHHH
Q 015651 61 LLSASKGDTIKLKRALLALYHP---GNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLAT 137 (403)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLyhp---~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 137 (403)
+|.+++ ..+.+.++|+.+... ...++| +|-.+++...+.+...... ...++.++... ...| ...|
T Consensus 2 iip~~n-~~~~l~~~l~sl~~q~~~~~~iiv-vdd~s~d~t~~~~~~~~~~-----~~~~~~~~~~~---~~~g--~~~~ 69 (180)
T cd06423 2 IVPAYN-EEAVIERTIESLLALDYPKLEVIV-VDDGSTDDTLEILEELAAL-----YIRRVLVVRDK---ENGG--KAGA 69 (180)
T ss_pred eecccC-hHHHHHHHHHHHHhCCCCceEEEE-EeCCCccchHHHHHHHhcc-----ccceEEEEEec---ccCC--chHH
Confidence 466777 679999999998753 334444 5555555444444432211 01334433211 1222 2333
Q ss_pred HHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHH
Q 015651 138 TLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEA 173 (403)
Q Consensus 138 tL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~ 173 (403)
--.++ +...-||++.+.+.|++ +.+.|...
T Consensus 70 ~n~~~----~~~~~~~i~~~D~D~~~--~~~~l~~~ 99 (180)
T cd06423 70 LNAGL----RHAKGDIVVVLDADTIL--EPDALKRL 99 (180)
T ss_pred HHHHH----HhcCCCEEEEECCCCCc--ChHHHHHH
Confidence 33333 33357999999999877 45555554
No 68
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=28.45 E-value=4.5e+02 Score=26.69 Aligned_cols=98 Identities=14% Similarity=0.095 Sum_probs=56.0
Q ss_pred EEEEEEecCCCHHHHHHHHHHHcCC-----CCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcc--eeeec
Q 015651 58 FAYLLSASKGDTIKLKRALLALYHP-----GNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPN--LVTYR 130 (403)
Q Consensus 58 iAYLI~~hk~d~~~l~rLl~aLyhp-----~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~--~V~wg 130 (403)
++.+|++++ .++.++|+|++|..- ...++|-.|.... +..+.+..+. .+|.++.... ....|
T Consensus 2 ~PVlv~ayN-Rp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~-~~~~~v~~~~---------~~i~~i~~~~~~~~~~~ 70 (334)
T cd02514 2 IPVLVIACN-RPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE-EVADVAKSFG---------DGVTHIQHPPISIKNVN 70 (334)
T ss_pred cCEEEEecC-CHHHHHHHHHHHHhccccCCCceEEEEeCCCch-HHHHHHHhhc---------cccEEEEcccccccccC
Confidence 356788998 699999999999853 2456677777432 2222222110 1344432211 11111
Q ss_pred ------C-ccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccc
Q 015651 131 ------G-PTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVT 166 (403)
Q Consensus 131 ------g-~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t 166 (403)
+ ..+...-..++..++.....+++|.|-+.+.|-..
T Consensus 71 ~~~~~~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPd 113 (334)
T cd02514 71 PPHKFQGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPD 113 (334)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHh
Confidence 1 22333333466667765568999999998876544
No 69
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=27.81 E-value=2.5e+02 Score=25.15 Aligned_cols=97 Identities=11% Similarity=0.113 Sum_probs=52.1
Q ss_pred EEEecCCCHHHHHHHHHHHcC------CCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccc-eEEeCCcceeeecCcc
Q 015651 61 LLSASKGDTIKLKRALLALYH------PGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNN-VYIVGKPNLVTYRGPT 133 (403)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLyh------p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~N-V~vv~~~~~V~wgg~S 133 (403)
+|.+++ ..+.+.++|+.+.. +.+.=+|-+|-.+++.-.+.++.+.+ .+++ |+++.... ..|.+
T Consensus 2 iip~yN-~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~------~~~~~i~~i~~~~---n~G~~ 71 (211)
T cd04188 2 VIPAYN-EEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLAR------KNPALIRVLTLPK---NRGKG 71 (211)
T ss_pred EEcccC-hHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHH------hCCCcEEEEEccc---CCCcH
Confidence 455665 45556555555532 13344567888887665555554432 2333 35553221 13433
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHHc
Q 015651 134 MLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFS 175 (403)
Q Consensus 134 ~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~fs 175 (403)
.|...+++.+ .-||++.|.+.+.+ +.+.|...+.
T Consensus 72 --~a~~~g~~~a----~gd~i~~ld~D~~~--~~~~l~~l~~ 105 (211)
T cd04188 72 --GAVRAGMLAA----RGDYILFADADLAT--PFEELEKLEE 105 (211)
T ss_pred --HHHHHHHHHh----cCCEEEEEeCCCCC--CHHHHHHHHH
Confidence 3444444443 34999999988873 4455555444
No 70
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=27.33 E-value=3.5e+02 Score=30.44 Aligned_cols=116 Identities=13% Similarity=0.088 Sum_probs=62.8
Q ss_pred CCCCeEEEEEEecCCCHHHHHHHHHH----HcCCCCEEEEEE--cCCCCHHHHHHHHHHhhccCccccccceEEeCCcce
Q 015651 53 SYPVTFAYLLSASKGDTIKLKRALLA----LYHPGNHYLIHM--DREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNL 126 (403)
Q Consensus 53 ~~~~kiAYLI~~hk~d~~~l~rLl~a----Lyhp~n~y~IHl--D~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~ 126 (403)
...++++.+|=+|+ ..+.+.+++++ |+.|+-.++|-. |-..... .+++. ...+|++++|..+.
T Consensus 68 ~~~~~vsIlVPa~n-E~~VI~~~v~~ll~~ldYp~~~I~v~~~~nD~~T~~---~~~~~------~~~~p~~~~v~~~~- 136 (703)
T PRK15489 68 RDEQPLAIMVPAWK-EYDVIAKMIENMLATLDYRRYVIFVGTYPNDAETIT---EVERM------RRRYKRLVRVEVPH- 136 (703)
T ss_pred cCCCceEEEEeCCC-cHHHHHHHHHHHHhcCCCCCeEEEEEecCCCccHHH---HHHHH------hccCCcEEEEEcCC-
Confidence 34568999999999 78888888876 356754433322 2222222 23321 12467888765322
Q ss_pred eeecCc-cHHHHHHHHHHHHHh----CCC-CcEEEeccCCceeccchhhHHHHHccCCCCcceEe
Q 015651 127 VTYRGP-TMLATTLHAIAMLLR----CCK-WDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQ 185 (403)
Q Consensus 127 V~wgg~-S~V~AtL~~~~~lL~----~~~-wdyfi~LSgsDyPL~t~~~i~~~fs~~~~~~nFIe 185 (403)
+|+ +.-.|-=.+++.+++ .+. ++.++..-+.|.|=..+-...+++. .+..+|.
T Consensus 137 ---~gp~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~~~~~---~~~~~iQ 195 (703)
T PRK15489 137 ---DGPTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYFNYLL---PRKDLVQ 195 (703)
T ss_pred ---CCCCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHHHhhc---CCcceee
Confidence 343 222222222333222 123 7789999999997555444444432 2235565
No 71
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=26.90 E-value=3.2e+02 Score=21.66 Aligned_cols=89 Identities=18% Similarity=0.222 Sum_probs=49.5
Q ss_pred EEEecCCCHHHHHHHHHHHcCCC--CEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHHHH
Q 015651 61 LLSASKGDTIKLKRALLALYHPG--NHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATT 138 (403)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLyhp~--n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~At 138 (403)
+|.+++ ..+.+.++++++.... +.-++-+|-.+++.....+....+ ...++..+ ...+..+...+-
T Consensus 2 ii~~~~-~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~------~~~~~~~~-----~~~~~~g~~~~~ 69 (156)
T cd00761 2 IIPAYN-EEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAK------KDPRVIRV-----INEENQGLAAAR 69 (156)
T ss_pred EEeecC-cHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHh------cCCCeEEE-----EecCCCChHHHH
Confidence 466666 6899999999987443 444555777666554444443221 11112221 222334444444
Q ss_pred HHHHHHHHhCCCCcEEEeccCCceecc
Q 015651 139 LHAIAMLLRCCKWDWFINLSASDYPLV 165 (403)
Q Consensus 139 L~~~~~lL~~~~wdyfi~LSgsDyPL~ 165 (403)
-.++..+ ..||++.+.+.+.+..
T Consensus 70 ~~~~~~~----~~d~v~~~d~D~~~~~ 92 (156)
T cd00761 70 NAGLKAA----RGEYILFLDADDLLLP 92 (156)
T ss_pred HHHHHHh----cCCEEEEECCCCccCc
Confidence 4444443 4789999988777543
No 72
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=26.29 E-value=3.5e+02 Score=22.68 Aligned_cols=92 Identities=13% Similarity=0.098 Sum_probs=57.2
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCC-CEEEEEEcCCCCH-HHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHHH
Q 015651 60 YLLSASKGDTIKLKRALLALYHPG-NHYLIHMDREAPE-KEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLAT 137 (403)
Q Consensus 60 YLI~~hk~d~~~l~rLl~aLyhp~-n~y~IHlD~ka~~-~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 137 (403)
++|.+|..=.+-+...++.+...+ +.+.+-+....+. ....++.+.++..+ ....|-++.+ ...|.+..+..
T Consensus 3 ili~sHG~~A~gi~~~~~~i~G~~~~i~~~~~~~~~~~~~~~~~i~~~i~~~~---~~~~viil~D---l~GGSp~n~~~ 76 (122)
T cd00006 3 IIIATHGGFASGLLNSAEMILGEQENVEAIDFPPGESPDDLLEKIKAALAELD---SGEGVLILTD---LFGGSPNNAAA 76 (122)
T ss_pred EEEEcCHHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC---CCCcEEEEEe---CCCCCHHHHHH
Confidence 678888744678888999998555 7777888776554 45666776665322 2345666532 44455544333
Q ss_pred HHHHHHHHHhCCCCcEEEeccCCceecc
Q 015651 138 TLHAIAMLLRCCKWDWFINLSASDYPLV 165 (403)
Q Consensus 138 tL~~~~~lL~~~~wdyfi~LSgsDyPL~ 165 (403)
.+. .+. .-+..+||-+.|+.
T Consensus 77 ~~~-----~~~---~~~~visG~nlpml 96 (122)
T cd00006 77 RLS-----MEH---PPVEVIAGVNLPML 96 (122)
T ss_pred HHH-----hcC---CCEEEEEccCHHHH
Confidence 221 121 34678999999985
No 73
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=25.49 E-value=5.7e+02 Score=25.70 Aligned_cols=99 Identities=20% Similarity=0.172 Sum_probs=53.9
Q ss_pred CCCeEEEEEEecCCCH--HHHH-----------------------HHHHHHcCCCCEEEEEEcCC--CCHHHHHHHHHHh
Q 015651 54 YPVTFAYLLSASKGDT--IKLK-----------------------RALLALYHPGNHYLIHMDRE--APEKEQREIAEFV 106 (403)
Q Consensus 54 ~~~kiAYLI~~hk~d~--~~l~-----------------------rLl~aLyhp~n~y~IHlD~k--a~~~~~~~l~~~v 106 (403)
..+.+|||+.|..|-+ .... |++.+-.||+..++-.-+++ -+.++-.++.+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 4577899998887642 1222 23333347775554443332 2344444455555
Q ss_pred hccCccccccceEEeCCcceeeecCccHHHHHHHHHHHHHhCCC-CcEEEeccCC
Q 015651 107 ANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSAS 160 (403)
Q Consensus 107 ~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSgs 160 (403)
...|.. ....|.+|...+ .|-.+.-+++-..|++++ .-+||+++.+
T Consensus 99 ~~~~~~-~~~kv~iI~~a~-------~m~~~aaNaLLK~LEEPp~~~~fiL~t~~ 145 (328)
T PRK05707 99 VQTAQL-GGRKVVLIEPAE-------AMNRNAANALLKSLEEPSGDTVLLLISHQ 145 (328)
T ss_pred hhcccc-CCCeEEEECChh-------hCCHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 443422 234466665444 333455555555677776 8888888855
No 74
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=24.21 E-value=1.2e+02 Score=28.07 Aligned_cols=40 Identities=20% Similarity=0.381 Sum_probs=30.8
Q ss_pred CCCCeEEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEcCCCC
Q 015651 53 SYPVTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAP 95 (403)
Q Consensus 53 ~~~~kiAYLI~~hk~d~~~l~rLl~aLyhp~n~y~IHlD~ka~ 95 (403)
+......|++.+| .-+++..++.|...+-..|||+|.=-.
T Consensus 21 es~~~~vflL~~~---i~~ik~ivk~lK~~gK~vfiHvDLv~G 60 (181)
T COG1954 21 ESESQYVFLLTGH---ILNIKEIVKKLKNRGKTVFIHVDLVEG 60 (181)
T ss_pred cCCCeEEEEEech---hhhHHHHHHHHHhCCcEEEEEeHHhcc
Confidence 4457778888765 568888888888777888999996543
No 75
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=24.04 E-value=1e+03 Score=27.55 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=61.7
Q ss_pred CCCCeEEEEEEecCCCHHHHHHHHHHH---cCCCC-EEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceee
Q 015651 53 SYPVTFAYLLSASKGDTIKLKRALLAL---YHPGN-HYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVT 128 (403)
Q Consensus 53 ~~~~kiAYLI~~hk~d~~~l~rLl~aL---yhp~n-~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~ 128 (403)
+..|+++.+|-+|+.+.+.+++.+.++ +.|.. .=++=+|-.+.++. .++++ ..+|+++.....
T Consensus 257 ~~~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t-~~la~----------~~~v~yI~R~~n-- 323 (852)
T PRK11498 257 SLWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEF-RQFAQ----------EVGVKYIARPTH-- 323 (852)
T ss_pred CCCCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHH-HHHHH----------HCCcEEEEeCCC--
Confidence 345799999999985556667777654 33543 22344565555543 23321 135776643221
Q ss_pred ecCccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccch-hhHHHHHccCCCCcceEe
Q 015651 129 YRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQ-DDLIEAFSDLPRDLNFIQ 185 (403)
Q Consensus 129 wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~-~~i~~~fs~~~~~~nFIe 185 (403)
-+| -+ .++..+++...-||++.+.+.+.|-... ..+..+|.+ +.+.-++.
T Consensus 324 ~~g---KA---GnLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~-dP~VglVQ 374 (852)
T PRK11498 324 EHA---KA---GNINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLK-DKKLAMMQ 374 (852)
T ss_pred Ccc---hH---HHHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHh-CCCeEEEE
Confidence 111 11 1233445555579999999999986443 333444433 33355553
No 76
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=23.01 E-value=1.2e+02 Score=33.59 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=36.5
Q ss_pred CeEEEE--EEecCCCHHHHHHHHHHHc-CCCCEEEEEEcCCCCHHHHHHHH
Q 015651 56 VTFAYL--LSASKGDTIKLKRALLALY-HPGNHYLIHMDREAPEKEQREIA 103 (403)
Q Consensus 56 ~kiAYL--I~~hk~d~~~l~rLl~aLy-hp~n~y~IHlD~ka~~~~~~~l~ 103 (403)
+++..+ .++|. |..+|...++.+. .|.+.+++|=|.++.......|.
T Consensus 562 ~~V~~~~gfSaHa-D~~~L~~~v~~~~p~p~~v~lvHGe~~~~~~la~~l~ 611 (630)
T TIGR03675 562 MEVETVEGFSGHS-DRRQLMNYVRRMQPKPEKILLNHGEPSKILDLASSIY 611 (630)
T ss_pred EEEEEeCCccccC-CHHHHHHHHHhcCCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 344444 59999 9999999999996 57899999999876666555554
No 77
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=22.11 E-value=6.7e+02 Score=23.60 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=57.9
Q ss_pred EEEEEEecCC-CHHHHHHHHHHHc--CCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccH
Q 015651 58 FAYLLSASKG-DTIKLKRALLALY--HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTM 134 (403)
Q Consensus 58 iAYLI~~hk~-d~~~l~rLl~aLy--hp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~ 134 (403)
.||+-++... -...+.-++..|- +++..++|+++...+.+.++.|+.... ..-.|..+.........+-..
T Consensus 1 ~ay~t~~~~~~Y~~~a~vl~~SL~~~~~~~~~~vl~~~~is~~~~~~L~~~~~------~~~~v~~i~~~~~~~~~~~~~ 74 (240)
T cd02537 1 EAYVTLLTNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVGW------IVREVEPIDPPDSANLLKRPR 74 (240)
T ss_pred CEEEEEecChhHHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHcCC------EEEecCccCCcchhhhccchH
Confidence 3777776641 2455666666664 345566778887777887777774210 111111222111110011122
Q ss_pred HHHHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHH
Q 015651 135 LATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIE 172 (403)
Q Consensus 135 V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~ 172 (403)
..++..=+. +.+...+|.++.|.+.-+.+.+.++|.+
T Consensus 75 ~~~~~~kl~-~~~l~~~drvlylD~D~~v~~~i~~Lf~ 111 (240)
T cd02537 75 FKDTYTKLR-LWNLTEYDKVVFLDADTLVLRNIDELFD 111 (240)
T ss_pred HHHHhHHHH-hccccccceEEEEeCCeeEccCHHHHhC
Confidence 222222111 1122359999999999999999888755
No 78
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.94 E-value=6.4e+02 Score=27.70 Aligned_cols=98 Identities=20% Similarity=0.287 Sum_probs=58.0
Q ss_pred CCCeEEEEEEecCCC--HHHHHHHHHHHcC----------------------CCCEEEEEEcCCC--CHHHHHHHHHHhh
Q 015651 54 YPVTFAYLLSASKGD--TIKLKRALLALYH----------------------PGNHYLIHMDREA--PEKEQREIAEFVA 107 (403)
Q Consensus 54 ~~~kiAYLI~~hk~d--~~~l~rLl~aLyh----------------------p~n~y~IHlD~ka--~~~~~~~l~~~v~ 107 (403)
..+.+|||+.|..|- .-..+.+.++|+- +.+.-+|-+|+.+ +.++-.+|.+.+.
T Consensus 32 ~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~ 111 (584)
T PRK14952 32 GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAF 111 (584)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHH
Confidence 357889999988764 3344445555551 1233456778865 3555555665565
Q ss_pred ccCccccccceEEeCCcceeeecCccHHHHHHHHHHHHHhCCC-CcEEEeccC
Q 015651 108 NEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSA 159 (403)
Q Consensus 108 ~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSg 159 (403)
..|... ...|.+|.+.+..+= ...+++...|++.. .-.||+++.
T Consensus 112 ~~P~~~-~~KVvIIDEah~Lt~-------~A~NALLK~LEEpp~~~~fIL~tt 156 (584)
T PRK14952 112 YAPAQS-RYRIFIVDEAHMVTT-------AGFNALLKIVEEPPEHLIFIFATT 156 (584)
T ss_pred hhhhcC-CceEEEEECCCcCCH-------HHHHHHHHHHhcCCCCeEEEEEeC
Confidence 555443 345888876554432 23444445566666 888888773
No 79
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=21.49 E-value=3.6e+02 Score=26.17 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=55.6
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEE---EEEEc-CCCCHHHHHHHHHHhhccCccccccceEEeC-------Ccce--
Q 015651 60 YLLSASKGDTIKLKRALLALYHPGNHY---LIHMD-REAPEKEQREIAEFVANEPVFRMVNNVYIVG-------KPNL-- 126 (403)
Q Consensus 60 YLI~~hk~d~~~l~rLl~aLyhp~n~y---~IHlD-~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~-------~~~~-- 126 (403)
.+|+++.....+..++|+.|.+-+|.. ++|-. .+-+.+.+++|.. ..+|.++. +...
T Consensus 4 IVi~~g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~----------~q~v~~vd~~~~~~~~~~~~~ 73 (271)
T PF11051_consen 4 IVITAGDKYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLP----------DQDVWFVDASCVIDPDYLGKS 73 (271)
T ss_pred EEEEecCccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhh----------hhhhheecceEEeeccccccc
Confidence 456676656777788888888766633 34542 3445666666653 22333322 1111
Q ss_pred eeecCccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHH
Q 015651 127 VTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIE 172 (403)
Q Consensus 127 V~wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~ 172 (403)
+...|+. +..+|.+ .+.++-+++|.+..+|+++.+.+.+
T Consensus 74 ~~~~~~~-----~K~lA~l--~ssFeevllLDaD~vpl~~p~~lF~ 112 (271)
T PF11051_consen 74 FSKKGFQ-----NKWLALL--FSSFEEVLLLDADNVPLVDPEKLFE 112 (271)
T ss_pred cccCCch-----hhhhhhh--hCCcceEEEEcCCcccccCHHHHhc
Confidence 1111222 2333333 2358999999999999999887644
No 80
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=21.34 E-value=5.6e+02 Score=25.72 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHHHHhCCC-CcEEEeccCC
Q 015651 133 TMLATTLHAIAMLLRCCK-WDWFINLSAS 160 (403)
Q Consensus 133 S~V~AtL~~~~~lL~~~~-wdyfi~LSgs 160 (403)
.|-.+.-+++-..|++++ .-+||+++.+
T Consensus 124 ~m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 124 AINRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred hhCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 344555555555667776 7788888754
No 81
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=20.85 E-value=8.3e+02 Score=24.21 Aligned_cols=107 Identities=7% Similarity=0.035 Sum_probs=61.0
Q ss_pred CCCeEEEEEEecCCCHHHHHHHHHHHc-----CCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceee
Q 015651 54 YPVTFAYLLSASKGDTIKLKRALLALY-----HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVT 128 (403)
Q Consensus 54 ~~~kiAYLI~~hk~d~~~l~rLl~aLy-----hp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~ 128 (403)
+.+++..+|-+++ ..+.+.++++.+. .+.+.=+|=+|-.|++.-.+.+++..+. ...+|..+..
T Consensus 4 ~~~~vSVVIP~yN-E~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~-----~~~~v~~i~~----- 72 (325)
T PRK10714 4 PIKKVSVVIPVYN-EQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQA-----PDSHIVAILL----- 72 (325)
T ss_pred CCCeEEEEEcccC-chhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhh-----cCCcEEEEEe-----
Confidence 3467899999998 6777777766553 1223335667777766655544443211 1234543321
Q ss_pred ecCccHHHHHHHHHHHHHhCCCCcEEEeccCCceeccchhhHHHHHccC
Q 015651 129 YRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDL 177 (403)
Q Consensus 129 wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL~t~~~i~~~fs~~ 177 (403)
-.++..-.|...+++. ..-||++.+.+.+- .+.++|.+.+..+
T Consensus 73 ~~n~G~~~A~~~G~~~----A~gd~vv~~DaD~q--~~p~~i~~l~~~~ 115 (325)
T PRK10714 73 NRNYGQHSAIMAGFSH----VTGDLIITLDADLQ--NPPEEIPRLVAKA 115 (325)
T ss_pred CCCCCHHHHHHHHHHh----CCCCEEEEECCCCC--CCHHHHHHHHHHH
Confidence 1233444444444443 34699999988776 4666777766544
No 82
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=20.42 E-value=5.2e+02 Score=21.67 Aligned_cols=93 Identities=13% Similarity=0.128 Sum_probs=59.9
Q ss_pred EEEEEecCCCHHHHHHHHHHHcCCC-CEEEEEEcCCCCH-HHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHH
Q 015651 59 AYLLSASKGDTIKLKRALLALYHPG-NHYLIHMDREAPE-KEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLA 136 (403)
Q Consensus 59 AYLI~~hk~d~~~l~rLl~aLyhp~-n~y~IHlD~ka~~-~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 136 (403)
-++|.+|.+=.+-+...++.+..+. +.+.|-+....+. +..+++++.++..+ .-..|.|+.+ ...|.+..++
T Consensus 3 ~ili~sHG~~A~gl~~s~~~i~G~~~~i~~i~~~~~~~~~~~~~~l~~~i~~~~---~~~~vivltD---l~GGSp~n~a 76 (116)
T TIGR00824 3 AIIISGHGQAAIALLKSAEMIFGEQNNVGAVPFVPGENAETLQEKYNAALADLD---TEEEVLFLVD---IFGGSPYNAA 76 (116)
T ss_pred EEEEEecHHHHHHHHHHHHHHcCCcCCeEEEEcCCCcCHHHHHHHHHHHHHhcC---CCCCEEEEEe---CCCCCHHHHH
Confidence 5788899844577888888887544 5777777765544 46677777765322 2356766643 6667776665
Q ss_pred HHHHHHHHHHhCCCCcEEEeccCCceecc
Q 015651 137 TTLHAIAMLLRCCKWDWFINLSASDYPLV 165 (403)
Q Consensus 137 AtL~~~~~lL~~~~wdyfi~LSgsDyPL~ 165 (403)
+.+ +.+. .-+..+||--.|+.
T Consensus 77 ~~~-----~~~~---~~~~vIsG~NLpml 97 (116)
T TIGR00824 77 ARI-----IVDK---PHMDVIAGVNLPLL 97 (116)
T ss_pred HHH-----Hhhc---CCEEEEEecCHHHH
Confidence 433 2232 23569999999884
No 83
>PRK08309 short chain dehydrogenase; Provisional
Probab=20.17 E-value=6.5e+02 Score=22.73 Aligned_cols=82 Identities=11% Similarity=0.047 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHcCCCCEEEEEEcCCCCHHHHHHHHHHhhccCccccccceEEeCCcceeeecCccHHHHHHHHHHHHHh
Q 015651 68 DTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLR 147 (403)
Q Consensus 68 d~~~l~rLl~aLyhp~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~ 147 (403)
+.+....+...+..+....++..|-....+....++..++ ..+.+. ..|.|-....-++...+++.+=-
T Consensus 32 ~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~------~~g~id-----~lv~~vh~~~~~~~~~~~~~~gv 100 (177)
T PRK08309 32 REVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIE------KNGPFD-----LAVAWIHSSAKDALSVVCRELDG 100 (177)
T ss_pred CHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHH------HcCCCe-----EEEEeccccchhhHHHHHHHHcc
Confidence 5677777776665456677788888766555554443322 334433 23566666666666666666543
Q ss_pred CCC-CcEEEeccCC
Q 015651 148 CCK-WDWFINLSAS 160 (403)
Q Consensus 148 ~~~-wdyfi~LSgs 160 (403)
.++ |.++|.|...
T Consensus 101 ~~~~~~~~h~~gs~ 114 (177)
T PRK08309 101 SSETYRLFHVLGSA 114 (177)
T ss_pred CCCCceEEEEeCCc
Confidence 445 8999998443
Done!